179bdfe76SSatish Balay 2c6db04a5SJed Brown #include <../src/mat/impls/baij/mpi/mpibaij.h> /*I "petscmat.h" I*/ 3c6db04a5SJed Brown #include <petscblaslapack.h> 479bdfe76SSatish Balay 509573ac7SBarry Smith extern PetscErrorCode MatSetUpMultiply_MPIBAIJ(Mat); 609573ac7SBarry Smith extern PetscErrorCode DisAssemble_MPIBAIJ(Mat); 709573ac7SBarry Smith extern PetscErrorCode MatGetValues_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt [],PetscScalar []); 809573ac7SBarry Smith extern PetscErrorCode MatSetValues_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt [],const PetscScalar [],InsertMode); 909573ac7SBarry Smith extern PetscErrorCode MatSetValuesBlocked_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode); 1009573ac7SBarry Smith extern PetscErrorCode MatGetRow_SeqBAIJ(Mat,PetscInt,PetscInt*,PetscInt*[],PetscScalar*[]); 1109573ac7SBarry Smith extern PetscErrorCode MatRestoreRow_SeqBAIJ(Mat,PetscInt,PetscInt*,PetscInt*[],PetscScalar*[]); 1209573ac7SBarry Smith extern PetscErrorCode MatZeroRows_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscScalar,Vec,Vec); 1393fea6afSBarry Smith 144a2ae208SSatish Balay #undef __FUNCT__ 15985db425SBarry Smith #define __FUNCT__ "MatGetRowMaxAbs_MPIBAIJ" 16985db425SBarry Smith PetscErrorCode MatGetRowMaxAbs_MPIBAIJ(Mat A,Vec v,PetscInt idx[]) 177843d17aSBarry Smith { 187843d17aSBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 19dfbe8321SBarry Smith PetscErrorCode ierr; 20985db425SBarry Smith PetscInt i,*idxb = 0; 2187828ca2SBarry Smith PetscScalar *va,*vb; 227843d17aSBarry Smith Vec vtmp; 237843d17aSBarry Smith 247843d17aSBarry Smith PetscFunctionBegin; 25985db425SBarry Smith ierr = MatGetRowMaxAbs(a->A,v,idx);CHKERRQ(ierr); 261ebc52fbSHong Zhang ierr = VecGetArray(v,&va);CHKERRQ(ierr); 27985db425SBarry Smith if (idx) { 28192daf7cSBarry Smith for (i=0; i<A->rmap->n; i++) {if (PetscAbsScalar(va[i])) idx[i] += A->cmap->rstart;} 29985db425SBarry Smith } 307843d17aSBarry Smith 31d0f46423SBarry Smith ierr = VecCreateSeq(PETSC_COMM_SELF,A->rmap->n,&vtmp);CHKERRQ(ierr); 32d0f46423SBarry Smith if (idx) {ierr = PetscMalloc(A->rmap->n*sizeof(PetscInt),&idxb);CHKERRQ(ierr);} 33985db425SBarry Smith ierr = MatGetRowMaxAbs(a->B,vtmp,idxb);CHKERRQ(ierr); 341ebc52fbSHong Zhang ierr = VecGetArray(vtmp,&vb);CHKERRQ(ierr); 357843d17aSBarry Smith 36d0f46423SBarry Smith for (i=0; i<A->rmap->n; i++){ 37d0f46423SBarry Smith if (PetscAbsScalar(va[i]) < PetscAbsScalar(vb[i])) {va[i] = vb[i]; if (idx) idx[i] = A->cmap->bs*a->garray[idxb[i]/A->cmap->bs] + (idxb[i] % A->cmap->bs);} 387843d17aSBarry Smith } 397843d17aSBarry Smith 401ebc52fbSHong Zhang ierr = VecRestoreArray(v,&va);CHKERRQ(ierr); 411ebc52fbSHong Zhang ierr = VecRestoreArray(vtmp,&vb);CHKERRQ(ierr); 42c31cb41cSBarry Smith ierr = PetscFree(idxb);CHKERRQ(ierr); 436bf464f9SBarry Smith ierr = VecDestroy(&vtmp);CHKERRQ(ierr); 447843d17aSBarry Smith PetscFunctionReturn(0); 457843d17aSBarry Smith } 467843d17aSBarry Smith 477fc3c18eSBarry Smith EXTERN_C_BEGIN 484a2ae208SSatish Balay #undef __FUNCT__ 494a2ae208SSatish Balay #define __FUNCT__ "MatStoreValues_MPIBAIJ" 507087cfbeSBarry Smith PetscErrorCode MatStoreValues_MPIBAIJ(Mat mat) 517fc3c18eSBarry Smith { 527fc3c18eSBarry Smith Mat_MPIBAIJ *aij = (Mat_MPIBAIJ *)mat->data; 53dfbe8321SBarry Smith PetscErrorCode ierr; 547fc3c18eSBarry Smith 557fc3c18eSBarry Smith PetscFunctionBegin; 567fc3c18eSBarry Smith ierr = MatStoreValues(aij->A);CHKERRQ(ierr); 577fc3c18eSBarry Smith ierr = MatStoreValues(aij->B);CHKERRQ(ierr); 587fc3c18eSBarry Smith PetscFunctionReturn(0); 597fc3c18eSBarry Smith } 607fc3c18eSBarry Smith EXTERN_C_END 617fc3c18eSBarry Smith 627fc3c18eSBarry Smith EXTERN_C_BEGIN 634a2ae208SSatish Balay #undef __FUNCT__ 644a2ae208SSatish Balay #define __FUNCT__ "MatRetrieveValues_MPIBAIJ" 657087cfbeSBarry Smith PetscErrorCode MatRetrieveValues_MPIBAIJ(Mat mat) 667fc3c18eSBarry Smith { 677fc3c18eSBarry Smith Mat_MPIBAIJ *aij = (Mat_MPIBAIJ *)mat->data; 68dfbe8321SBarry Smith PetscErrorCode ierr; 697fc3c18eSBarry Smith 707fc3c18eSBarry Smith PetscFunctionBegin; 717fc3c18eSBarry Smith ierr = MatRetrieveValues(aij->A);CHKERRQ(ierr); 727fc3c18eSBarry Smith ierr = MatRetrieveValues(aij->B);CHKERRQ(ierr); 737fc3c18eSBarry Smith PetscFunctionReturn(0); 747fc3c18eSBarry Smith } 757fc3c18eSBarry Smith EXTERN_C_END 767fc3c18eSBarry Smith 77537820f0SBarry Smith /* 78537820f0SBarry Smith Local utility routine that creates a mapping from the global column 7957b952d6SSatish Balay number to the local number in the off-diagonal part of the local 80e06f6af7SJed Brown storage of the matrix. This is done in a non scalable way since the 8157b952d6SSatish Balay length of colmap equals the global matrix length. 8257b952d6SSatish Balay */ 834a2ae208SSatish Balay #undef __FUNCT__ 844a2ae208SSatish Balay #define __FUNCT__ "CreateColmap_MPIBAIJ_Private" 85dfbe8321SBarry Smith PetscErrorCode CreateColmap_MPIBAIJ_Private(Mat mat) 8657b952d6SSatish Balay { 8757b952d6SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 8857b952d6SSatish Balay Mat_SeqBAIJ *B = (Mat_SeqBAIJ*)baij->B->data; 896849ba73SBarry Smith PetscErrorCode ierr; 90d0f46423SBarry Smith PetscInt nbs = B->nbs,i,bs=mat->rmap->bs; 9157b952d6SSatish Balay 92d64ed03dSBarry Smith PetscFunctionBegin; 93aa482453SBarry Smith #if defined (PETSC_USE_CTABLE) 94e23dfa41SBarry Smith ierr = PetscTableCreate(baij->nbs,baij->Nbs+1,&baij->colmap);CHKERRQ(ierr); 9548e59246SSatish Balay for (i=0; i<nbs; i++){ 963861aac3SJed Brown ierr = PetscTableAdd(baij->colmap,baij->garray[i]+1,i*bs+1,INSERT_VALUES);CHKERRQ(ierr); 9748e59246SSatish Balay } 9848e59246SSatish Balay #else 99b24ad042SBarry Smith ierr = PetscMalloc((baij->Nbs+1)*sizeof(PetscInt),&baij->colmap);CHKERRQ(ierr); 10052e6d16bSBarry Smith ierr = PetscLogObjectMemory(mat,baij->Nbs*sizeof(PetscInt));CHKERRQ(ierr); 101b24ad042SBarry Smith ierr = PetscMemzero(baij->colmap,baij->Nbs*sizeof(PetscInt));CHKERRQ(ierr); 102928fc39bSSatish Balay for (i=0; i<nbs; i++) baij->colmap[baij->garray[i]] = i*bs+1; 10348e59246SSatish Balay #endif 1043a40ed3dSBarry Smith PetscFunctionReturn(0); 10557b952d6SSatish Balay } 10657b952d6SSatish Balay 107f5e9677aSSatish Balay #define MatSetValues_SeqBAIJ_A_Private(row,col,value,addv) \ 10880c1aa95SSatish Balay { \ 10980c1aa95SSatish Balay \ 11080c1aa95SSatish Balay brow = row/bs; \ 11180c1aa95SSatish Balay rp = aj + ai[brow]; ap = aa + bs2*ai[brow]; \ 112ac7a638eSSatish Balay rmax = aimax[brow]; nrow = ailen[brow]; \ 11380c1aa95SSatish Balay bcol = col/bs; \ 11480c1aa95SSatish Balay ridx = row % bs; cidx = col % bs; \ 115ab26458aSBarry Smith low = 0; high = nrow; \ 116ab26458aSBarry Smith while (high-low > 3) { \ 117ab26458aSBarry Smith t = (low+high)/2; \ 118ab26458aSBarry Smith if (rp[t] > bcol) high = t; \ 119ab26458aSBarry Smith else low = t; \ 120ab26458aSBarry Smith } \ 121ab26458aSBarry Smith for (_i=low; _i<high; _i++) { \ 12280c1aa95SSatish Balay if (rp[_i] > bcol) break; \ 12380c1aa95SSatish Balay if (rp[_i] == bcol) { \ 12480c1aa95SSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 125eada6651SSatish Balay if (addv == ADD_VALUES) *bap += value; \ 126eada6651SSatish Balay else *bap = value; \ 127ac7a638eSSatish Balay goto a_noinsert; \ 12880c1aa95SSatish Balay } \ 12980c1aa95SSatish Balay } \ 13089280ab3SLois Curfman McInnes if (a->nonew == 1) goto a_noinsert; \ 131e32f2f54SBarry Smith if (a->nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \ 132fef13f97SBarry Smith MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,brow,bcol,rmax,aa,ai,aj,rp,ap,aimax,a->nonew,MatScalar); \ 13380c1aa95SSatish Balay N = nrow++ - 1; \ 13480c1aa95SSatish Balay /* shift up all the later entries in this row */ \ 13580c1aa95SSatish Balay for (ii=N; ii>=_i; ii--) { \ 13680c1aa95SSatish Balay rp[ii+1] = rp[ii]; \ 1373eda8832SBarry Smith ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 13880c1aa95SSatish Balay } \ 1393eda8832SBarry Smith if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr); } \ 14080c1aa95SSatish Balay rp[_i] = bcol; \ 14180c1aa95SSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 142ac7a638eSSatish Balay a_noinsert:; \ 14380c1aa95SSatish Balay ailen[brow] = nrow; \ 14480c1aa95SSatish Balay } 14557b952d6SSatish Balay 146ac7a638eSSatish Balay #define MatSetValues_SeqBAIJ_B_Private(row,col,value,addv) \ 147ac7a638eSSatish Balay { \ 148ac7a638eSSatish Balay brow = row/bs; \ 149ac7a638eSSatish Balay rp = bj + bi[brow]; ap = ba + bs2*bi[brow]; \ 150ac7a638eSSatish Balay rmax = bimax[brow]; nrow = bilen[brow]; \ 151ac7a638eSSatish Balay bcol = col/bs; \ 152ac7a638eSSatish Balay ridx = row % bs; cidx = col % bs; \ 153ac7a638eSSatish Balay low = 0; high = nrow; \ 154ac7a638eSSatish Balay while (high-low > 3) { \ 155ac7a638eSSatish Balay t = (low+high)/2; \ 156ac7a638eSSatish Balay if (rp[t] > bcol) high = t; \ 157ac7a638eSSatish Balay else low = t; \ 158ac7a638eSSatish Balay } \ 159ac7a638eSSatish Balay for (_i=low; _i<high; _i++) { \ 160ac7a638eSSatish Balay if (rp[_i] > bcol) break; \ 161ac7a638eSSatish Balay if (rp[_i] == bcol) { \ 162ac7a638eSSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 163ac7a638eSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 164ac7a638eSSatish Balay else *bap = value; \ 165ac7a638eSSatish Balay goto b_noinsert; \ 166ac7a638eSSatish Balay } \ 167ac7a638eSSatish Balay } \ 16889280ab3SLois Curfman McInnes if (b->nonew == 1) goto b_noinsert; \ 169e32f2f54SBarry Smith if (b->nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \ 170fef13f97SBarry Smith MatSeqXAIJReallocateAIJ(B,b->mbs,bs2,nrow,brow,bcol,rmax,ba,bi,bj,rp,ap,bimax,b->nonew,MatScalar); \ 171085a36d4SBarry Smith CHKMEMQ;\ 172ac7a638eSSatish Balay N = nrow++ - 1; \ 173ac7a638eSSatish Balay /* shift up all the later entries in this row */ \ 174ac7a638eSSatish Balay for (ii=N; ii>=_i; ii--) { \ 175ac7a638eSSatish Balay rp[ii+1] = rp[ii]; \ 1763eda8832SBarry Smith ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 177ac7a638eSSatish Balay } \ 1783eda8832SBarry Smith if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr);} \ 179ac7a638eSSatish Balay rp[_i] = bcol; \ 180ac7a638eSSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 181ac7a638eSSatish Balay b_noinsert:; \ 182ac7a638eSSatish Balay bilen[brow] = nrow; \ 183ac7a638eSSatish Balay } 184ac7a638eSSatish Balay 1854a2ae208SSatish Balay #undef __FUNCT__ 1864a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_MPIBAIJ" 187b24ad042SBarry Smith PetscErrorCode MatSetValues_MPIBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv) 18857b952d6SSatish Balay { 18957b952d6SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 19093fea6afSBarry Smith MatScalar value; 191ace3abfcSBarry Smith PetscBool roworiented = baij->roworiented; 192dfbe8321SBarry Smith PetscErrorCode ierr; 193b24ad042SBarry Smith PetscInt i,j,row,col; 194d0f46423SBarry Smith PetscInt rstart_orig=mat->rmap->rstart; 195d0f46423SBarry Smith PetscInt rend_orig=mat->rmap->rend,cstart_orig=mat->cmap->rstart; 196d0f46423SBarry Smith PetscInt cend_orig=mat->cmap->rend,bs=mat->rmap->bs; 19757b952d6SSatish Balay 198eada6651SSatish Balay /* Some Variables required in the macro */ 19980c1aa95SSatish Balay Mat A = baij->A; 20080c1aa95SSatish Balay Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)(A)->data; 201b24ad042SBarry Smith PetscInt *aimax=a->imax,*ai=a->i,*ailen=a->ilen,*aj=a->j; 2023eda8832SBarry Smith MatScalar *aa=a->a; 203ac7a638eSSatish Balay 204ac7a638eSSatish Balay Mat B = baij->B; 205ac7a638eSSatish Balay Mat_SeqBAIJ *b = (Mat_SeqBAIJ*)(B)->data; 206b24ad042SBarry Smith PetscInt *bimax=b->imax,*bi=b->i,*bilen=b->ilen,*bj=b->j; 2073eda8832SBarry Smith MatScalar *ba=b->a; 208ac7a638eSSatish Balay 209b24ad042SBarry Smith PetscInt *rp,ii,nrow,_i,rmax,N,brow,bcol; 210b24ad042SBarry Smith PetscInt low,high,t,ridx,cidx,bs2=a->bs2; 2113eda8832SBarry Smith MatScalar *ap,*bap; 21280c1aa95SSatish Balay 213d64ed03dSBarry Smith PetscFunctionBegin; 21471fd2e92SBarry Smith if (v) PetscValidScalarPointer(v,6); 21557b952d6SSatish Balay for (i=0; i<m; i++) { 2165ef9f2a5SBarry Smith if (im[i] < 0) continue; 2172515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 218e32f2f54SBarry Smith if (im[i] >= mat->rmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],mat->rmap->N-1); 219639f9d9dSBarry Smith #endif 22057b952d6SSatish Balay if (im[i] >= rstart_orig && im[i] < rend_orig) { 22157b952d6SSatish Balay row = im[i] - rstart_orig; 22257b952d6SSatish Balay for (j=0; j<n; j++) { 22357b952d6SSatish Balay if (in[j] >= cstart_orig && in[j] < cend_orig){ 22457b952d6SSatish Balay col = in[j] - cstart_orig; 22557b952d6SSatish Balay if (roworiented) value = v[i*n+j]; else value = v[i+j*m]; 226f5e9677aSSatish Balay MatSetValues_SeqBAIJ_A_Private(row,col,value,addv); 22780c1aa95SSatish Balay /* ierr = MatSetValues_SeqBAIJ(baij->A,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 22873959e64SBarry Smith } else if (in[j] < 0) continue; 2292515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 230660746e0SBarry Smith else if (in[j] >= mat->cmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",in[j],mat->cmap->N-1); 231639f9d9dSBarry Smith #endif 23257b952d6SSatish Balay else { 23357b952d6SSatish Balay if (mat->was_assembled) { 234905e6a2fSBarry Smith if (!baij->colmap) { 235905e6a2fSBarry Smith ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 236905e6a2fSBarry Smith } 237aa482453SBarry Smith #if defined (PETSC_USE_CTABLE) 2380f5bd95cSBarry Smith ierr = PetscTableFind(baij->colmap,in[j]/bs + 1,&col);CHKERRQ(ierr); 239bba1ac68SSatish Balay col = col - 1; 24048e59246SSatish Balay #else 241bba1ac68SSatish Balay col = baij->colmap[in[j]/bs] - 1; 24248e59246SSatish Balay #endif 24357b952d6SSatish Balay if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) { 24457b952d6SSatish Balay ierr = DisAssemble_MPIBAIJ(mat);CHKERRQ(ierr); 2458295de27SSatish Balay col = in[j]; 2469bf004c3SSatish Balay /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */ 2479bf004c3SSatish Balay B = baij->B; 2489bf004c3SSatish Balay b = (Mat_SeqBAIJ*)(B)->data; 2499bf004c3SSatish Balay bimax=b->imax;bi=b->i;bilen=b->ilen;bj=b->j; 2509bf004c3SSatish Balay ba=b->a; 251bba1ac68SSatish Balay } else col += in[j]%bs; 2528295de27SSatish Balay } else col = in[j]; 25357b952d6SSatish Balay if (roworiented) value = v[i*n+j]; else value = v[i+j*m]; 25490da58bdSSatish Balay MatSetValues_SeqBAIJ_B_Private(row,col,value,addv); 25590da58bdSSatish Balay /* ierr = MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 25657b952d6SSatish Balay } 25757b952d6SSatish Balay } 258d64ed03dSBarry Smith } else { 2594cb17eb5SBarry Smith if (mat->nooffprocentries) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Setting off process row %D even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set",im[i]); 26090f02eecSBarry Smith if (!baij->donotstash) { 261ff2fd236SBarry Smith if (roworiented) { 262b400d20cSBarry Smith ierr = MatStashValuesRow_Private(&mat->stash,im[i],n,in,v+i*n,PETSC_FALSE);CHKERRQ(ierr); 263ff2fd236SBarry Smith } else { 264b400d20cSBarry Smith ierr = MatStashValuesCol_Private(&mat->stash,im[i],n,in,v+i,m,PETSC_FALSE);CHKERRQ(ierr); 26557b952d6SSatish Balay } 26657b952d6SSatish Balay } 26757b952d6SSatish Balay } 26890f02eecSBarry Smith } 2693a40ed3dSBarry Smith PetscFunctionReturn(0); 27057b952d6SSatish Balay } 27157b952d6SSatish Balay 2724a2ae208SSatish Balay #undef __FUNCT__ 27397e5c40aSBarry Smith #define __FUNCT__ "MatSetValuesBlocked_MPIBAIJ" 27497e5c40aSBarry Smith PetscErrorCode MatSetValuesBlocked_MPIBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv) 275ab26458aSBarry Smith { 276ab26458aSBarry Smith Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 277dd6ea824SBarry Smith const PetscScalar *value; 278f15d580aSBarry Smith MatScalar *barray=baij->barray; 279ace3abfcSBarry Smith PetscBool roworiented = baij->roworiented; 280dfbe8321SBarry Smith PetscErrorCode ierr; 281899cda47SBarry Smith PetscInt i,j,ii,jj,row,col,rstart=baij->rstartbs; 282899cda47SBarry Smith PetscInt rend=baij->rendbs,cstart=baij->cstartbs,stepval; 283d0f46423SBarry Smith PetscInt cend=baij->cendbs,bs=mat->rmap->bs,bs2=baij->bs2; 284ab26458aSBarry Smith 285b16ae2b1SBarry Smith PetscFunctionBegin; 28630793edcSSatish Balay if(!barray) { 28782502324SSatish Balay ierr = PetscMalloc(bs2*sizeof(MatScalar),&barray);CHKERRQ(ierr); 28882502324SSatish Balay baij->barray = barray; 28930793edcSSatish Balay } 29030793edcSSatish Balay 291ab26458aSBarry Smith if (roworiented) { 292ab26458aSBarry Smith stepval = (n-1)*bs; 293ab26458aSBarry Smith } else { 294ab26458aSBarry Smith stepval = (m-1)*bs; 295ab26458aSBarry Smith } 296ab26458aSBarry Smith for (i=0; i<m; i++) { 2975ef9f2a5SBarry Smith if (im[i] < 0) continue; 2982515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 299e32f2f54SBarry Smith if (im[i] >= baij->Mbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large, row %D max %D",im[i],baij->Mbs-1); 300ab26458aSBarry Smith #endif 301ab26458aSBarry Smith if (im[i] >= rstart && im[i] < rend) { 302ab26458aSBarry Smith row = im[i] - rstart; 303ab26458aSBarry Smith for (j=0; j<n; j++) { 30415b57d14SSatish Balay /* If NumCol = 1 then a copy is not required */ 30515b57d14SSatish Balay if ((roworiented) && (n == 1)) { 306f15d580aSBarry Smith barray = (MatScalar*)v + i*bs2; 30715b57d14SSatish Balay } else if((!roworiented) && (m == 1)) { 308f15d580aSBarry Smith barray = (MatScalar*)v + j*bs2; 30915b57d14SSatish Balay } else { /* Here a copy is required */ 310ab26458aSBarry Smith if (roworiented) { 31153ef36baSBarry Smith value = v + (i*(stepval+bs) + j)*bs; 312ab26458aSBarry Smith } else { 31353ef36baSBarry Smith value = v + (j*(stepval+bs) + i)*bs; 314abef11f7SSatish Balay } 31553ef36baSBarry Smith for (ii=0; ii<bs; ii++,value+=bs+stepval) { 31647513183SBarry Smith for (jj=0; jj<bs; jj++) { 31753ef36baSBarry Smith barray[jj] = value[jj]; 31847513183SBarry Smith } 31953ef36baSBarry Smith barray += bs; 32047513183SBarry Smith } 32130793edcSSatish Balay barray -= bs2; 32215b57d14SSatish Balay } 323abef11f7SSatish Balay 324abef11f7SSatish Balay if (in[j] >= cstart && in[j] < cend){ 325abef11f7SSatish Balay col = in[j] - cstart; 32697e5c40aSBarry Smith ierr = MatSetValuesBlocked_SeqBAIJ(baij->A,1,&row,1,&col,barray,addv);CHKERRQ(ierr); 327ab26458aSBarry Smith } 3285ef9f2a5SBarry Smith else if (in[j] < 0) continue; 3292515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 330cb9801acSJed Brown else if (in[j] >= baij->Nbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large, col %D max %D",in[j],baij->Nbs-1); 331ab26458aSBarry Smith #endif 332ab26458aSBarry Smith else { 333ab26458aSBarry Smith if (mat->was_assembled) { 334ab26458aSBarry Smith if (!baij->colmap) { 335ab26458aSBarry Smith ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 336ab26458aSBarry Smith } 337a5eb4965SSatish Balay 3382515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 339aa482453SBarry Smith #if defined (PETSC_USE_CTABLE) 340b24ad042SBarry Smith { PetscInt data; 3410f5bd95cSBarry Smith ierr = PetscTableFind(baij->colmap,in[j]+1,&data);CHKERRQ(ierr); 342e32f2f54SBarry Smith if ((data - 1) % bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap"); 343fa46199cSSatish Balay } 34448e59246SSatish Balay #else 345e32f2f54SBarry Smith if ((baij->colmap[in[j]] - 1) % bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap"); 346a5eb4965SSatish Balay #endif 34748e59246SSatish Balay #endif 348aa482453SBarry Smith #if defined (PETSC_USE_CTABLE) 3490f5bd95cSBarry Smith ierr = PetscTableFind(baij->colmap,in[j]+1,&col);CHKERRQ(ierr); 350fa46199cSSatish Balay col = (col - 1)/bs; 35148e59246SSatish Balay #else 352a5eb4965SSatish Balay col = (baij->colmap[in[j]] - 1)/bs; 35348e59246SSatish Balay #endif 354ab26458aSBarry Smith if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) { 355ab26458aSBarry Smith ierr = DisAssemble_MPIBAIJ(mat);CHKERRQ(ierr); 356ab26458aSBarry Smith col = in[j]; 357ab26458aSBarry Smith } 358ab26458aSBarry Smith } 359ab26458aSBarry Smith else col = in[j]; 36097e5c40aSBarry Smith ierr = MatSetValuesBlocked_SeqBAIJ(baij->B,1,&row,1,&col,barray,addv);CHKERRQ(ierr); 361ab26458aSBarry Smith } 362ab26458aSBarry Smith } 363d64ed03dSBarry Smith } else { 3644cb17eb5SBarry Smith if (mat->nooffprocentries) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Setting off process row %D even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set",im[i]); 365ab26458aSBarry Smith if (!baij->donotstash) { 366ff2fd236SBarry Smith if (roworiented) { 3676fa18ffdSBarry Smith ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 368ff2fd236SBarry Smith } else { 3696fa18ffdSBarry Smith ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 370ff2fd236SBarry Smith } 371abef11f7SSatish Balay } 372ab26458aSBarry Smith } 373ab26458aSBarry Smith } 3743a40ed3dSBarry Smith PetscFunctionReturn(0); 375ab26458aSBarry Smith } 3766fa18ffdSBarry Smith 3770bdbc534SSatish Balay #define HASH_KEY 0.6180339887 378b24ad042SBarry Smith #define HASH(size,key,tmp) (tmp = (key)*HASH_KEY,(PetscInt)((size)*(tmp-(PetscInt)tmp))) 379b24ad042SBarry Smith /* #define HASH(size,key) ((PetscInt)((size)*fmod(((key)*HASH_KEY),1))) */ 380b24ad042SBarry Smith /* #define HASH(size,key,tmp) ((PetscInt)((size)*fmod(((key)*HASH_KEY),1))) */ 3814a2ae208SSatish Balay #undef __FUNCT__ 38297e5c40aSBarry Smith #define __FUNCT__ "MatSetValues_MPIBAIJ_HT" 38397e5c40aSBarry Smith PetscErrorCode MatSetValues_MPIBAIJ_HT(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv) 3840bdbc534SSatish Balay { 3850bdbc534SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 386ace3abfcSBarry Smith PetscBool roworiented = baij->roworiented; 387dfbe8321SBarry Smith PetscErrorCode ierr; 388b24ad042SBarry Smith PetscInt i,j,row,col; 389d0f46423SBarry Smith PetscInt rstart_orig=mat->rmap->rstart; 390d0f46423SBarry Smith PetscInt rend_orig=mat->rmap->rend,Nbs=baij->Nbs; 391d0f46423SBarry Smith PetscInt h1,key,size=baij->ht_size,bs=mat->rmap->bs,*HT=baij->ht,idx; 392329f5518SBarry Smith PetscReal tmp; 3933eda8832SBarry Smith MatScalar **HD = baij->hd,value; 3942515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 395b24ad042SBarry Smith PetscInt total_ct=baij->ht_total_ct,insert_ct=baij->ht_insert_ct; 3964a15367fSSatish Balay #endif 3970bdbc534SSatish Balay 3980bdbc534SSatish Balay PetscFunctionBegin; 39971fd2e92SBarry Smith if (v) PetscValidScalarPointer(v,6); 4000bdbc534SSatish Balay for (i=0; i<m; i++) { 4012515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 402e32f2f54SBarry Smith if (im[i] < 0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative row"); 403e32f2f54SBarry Smith if (im[i] >= mat->rmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],mat->rmap->N-1); 4040bdbc534SSatish Balay #endif 4050bdbc534SSatish Balay row = im[i]; 406c2760754SSatish Balay if (row >= rstart_orig && row < rend_orig) { 4070bdbc534SSatish Balay for (j=0; j<n; j++) { 4080bdbc534SSatish Balay col = in[j]; 4096fa18ffdSBarry Smith if (roworiented) value = v[i*n+j]; else value = v[i+j*m]; 410b24ad042SBarry Smith /* Look up PetscInto the Hash Table */ 411c2760754SSatish Balay key = (row/bs)*Nbs+(col/bs)+1; 412c2760754SSatish Balay h1 = HASH(size,key,tmp); 4130bdbc534SSatish Balay 414c2760754SSatish Balay 415c2760754SSatish Balay idx = h1; 4162515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 417187ce0cbSSatish Balay insert_ct++; 418187ce0cbSSatish Balay total_ct++; 419187ce0cbSSatish Balay if (HT[idx] != key) { 420187ce0cbSSatish Balay for (idx=h1; (idx<size) && (HT[idx]!=key); idx++,total_ct++); 421187ce0cbSSatish Balay if (idx == size) { 422187ce0cbSSatish Balay for (idx=0; (idx<h1) && (HT[idx]!=key); idx++,total_ct++); 423187ce0cbSSatish Balay if (idx == h1) { 424e32f2f54SBarry Smith SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"(%D,%D) has no entry in the hash table", row, col); 425187ce0cbSSatish Balay } 426187ce0cbSSatish Balay } 427187ce0cbSSatish Balay } 428187ce0cbSSatish Balay #else 429c2760754SSatish Balay if (HT[idx] != key) { 430c2760754SSatish Balay for (idx=h1; (idx<size) && (HT[idx]!=key); idx++); 431c2760754SSatish Balay if (idx == size) { 432c2760754SSatish Balay for (idx=0; (idx<h1) && (HT[idx]!=key); idx++); 433c2760754SSatish Balay if (idx == h1) { 434e32f2f54SBarry Smith SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"(%D,%D) has no entry in the hash table", row, col); 435c2760754SSatish Balay } 436c2760754SSatish Balay } 437c2760754SSatish Balay } 438187ce0cbSSatish Balay #endif 439c2760754SSatish Balay /* A HASH table entry is found, so insert the values at the correct address */ 440c2760754SSatish Balay if (addv == ADD_VALUES) *(HD[idx]+ (col % bs)*bs + (row % bs)) += value; 441c2760754SSatish Balay else *(HD[idx]+ (col % bs)*bs + (row % bs)) = value; 4420bdbc534SSatish Balay } 4430bdbc534SSatish Balay } else { 4440bdbc534SSatish Balay if (!baij->donotstash) { 445ff2fd236SBarry Smith if (roworiented) { 446b400d20cSBarry Smith ierr = MatStashValuesRow_Private(&mat->stash,im[i],n,in,v+i*n,PETSC_FALSE);CHKERRQ(ierr); 447ff2fd236SBarry Smith } else { 448b400d20cSBarry Smith ierr = MatStashValuesCol_Private(&mat->stash,im[i],n,in,v+i,m,PETSC_FALSE);CHKERRQ(ierr); 4490bdbc534SSatish Balay } 4500bdbc534SSatish Balay } 4510bdbc534SSatish Balay } 4520bdbc534SSatish Balay } 4532515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 454187ce0cbSSatish Balay baij->ht_total_ct = total_ct; 455187ce0cbSSatish Balay baij->ht_insert_ct = insert_ct; 456187ce0cbSSatish Balay #endif 4570bdbc534SSatish Balay PetscFunctionReturn(0); 4580bdbc534SSatish Balay } 4590bdbc534SSatish Balay 4604a2ae208SSatish Balay #undef __FUNCT__ 46197e5c40aSBarry Smith #define __FUNCT__ "MatSetValuesBlocked_MPIBAIJ_HT" 46297e5c40aSBarry Smith PetscErrorCode MatSetValuesBlocked_MPIBAIJ_HT(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv) 4630bdbc534SSatish Balay { 4640bdbc534SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 465ace3abfcSBarry Smith PetscBool roworiented = baij->roworiented; 466dfbe8321SBarry Smith PetscErrorCode ierr; 467b24ad042SBarry Smith PetscInt i,j,ii,jj,row,col; 468899cda47SBarry Smith PetscInt rstart=baij->rstartbs; 469d0f46423SBarry Smith PetscInt rend=mat->rmap->rend,stepval,bs=mat->rmap->bs,bs2=baij->bs2,nbs2=n*bs2; 470b24ad042SBarry Smith PetscInt h1,key,size=baij->ht_size,idx,*HT=baij->ht,Nbs=baij->Nbs; 471329f5518SBarry Smith PetscReal tmp; 4723eda8832SBarry Smith MatScalar **HD = baij->hd,*baij_a; 473dd6ea824SBarry Smith const PetscScalar *v_t,*value; 4742515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 475b24ad042SBarry Smith PetscInt total_ct=baij->ht_total_ct,insert_ct=baij->ht_insert_ct; 4764a15367fSSatish Balay #endif 4770bdbc534SSatish Balay 478d0a41580SSatish Balay PetscFunctionBegin; 479d0a41580SSatish Balay 4800bdbc534SSatish Balay if (roworiented) { 4810bdbc534SSatish Balay stepval = (n-1)*bs; 4820bdbc534SSatish Balay } else { 4830bdbc534SSatish Balay stepval = (m-1)*bs; 4840bdbc534SSatish Balay } 4850bdbc534SSatish Balay for (i=0; i<m; i++) { 4862515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 487e32f2f54SBarry Smith if (im[i] < 0) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %D",im[i]); 488e32f2f54SBarry Smith if (im[i] >= baij->Mbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],baij->Mbs-1); 4890bdbc534SSatish Balay #endif 4900bdbc534SSatish Balay row = im[i]; 491ab715e2cSSatish Balay v_t = v + i*nbs2; 492c2760754SSatish Balay if (row >= rstart && row < rend) { 4930bdbc534SSatish Balay for (j=0; j<n; j++) { 4940bdbc534SSatish Balay col = in[j]; 4950bdbc534SSatish Balay 4960bdbc534SSatish Balay /* Look up into the Hash Table */ 497c2760754SSatish Balay key = row*Nbs+col+1; 498c2760754SSatish Balay h1 = HASH(size,key,tmp); 4990bdbc534SSatish Balay 500c2760754SSatish Balay idx = h1; 5012515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 502187ce0cbSSatish Balay total_ct++; 503187ce0cbSSatish Balay insert_ct++; 504187ce0cbSSatish Balay if (HT[idx] != key) { 505187ce0cbSSatish Balay for (idx=h1; (idx<size) && (HT[idx]!=key); idx++,total_ct++); 506187ce0cbSSatish Balay if (idx == size) { 507187ce0cbSSatish Balay for (idx=0; (idx<h1) && (HT[idx]!=key); idx++,total_ct++); 508187ce0cbSSatish Balay if (idx == h1) { 509e32f2f54SBarry Smith SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"(%D,%D) has no entry in the hash table", row, col); 510187ce0cbSSatish Balay } 511187ce0cbSSatish Balay } 512187ce0cbSSatish Balay } 513187ce0cbSSatish Balay #else 514c2760754SSatish Balay if (HT[idx] != key) { 515c2760754SSatish Balay for (idx=h1; (idx<size) && (HT[idx]!=key); idx++); 516c2760754SSatish Balay if (idx == size) { 517c2760754SSatish Balay for (idx=0; (idx<h1) && (HT[idx]!=key); idx++); 518c2760754SSatish Balay if (idx == h1) { 519e32f2f54SBarry Smith SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"(%D,%D) has no entry in the hash table", row, col); 520c2760754SSatish Balay } 521c2760754SSatish Balay } 522c2760754SSatish Balay } 523187ce0cbSSatish Balay #endif 524c2760754SSatish Balay baij_a = HD[idx]; 5250bdbc534SSatish Balay if (roworiented) { 526c2760754SSatish Balay /*value = v + i*(stepval+bs)*bs + j*bs;*/ 527187ce0cbSSatish Balay /* value = v + (i*(stepval+bs)+j)*bs; */ 528187ce0cbSSatish Balay value = v_t; 529187ce0cbSSatish Balay v_t += bs; 530fef45726SSatish Balay if (addv == ADD_VALUES) { 531c2760754SSatish Balay for (ii=0; ii<bs; ii++,value+=stepval) { 532c2760754SSatish Balay for (jj=ii; jj<bs2; jj+=bs) { 533fef45726SSatish Balay baij_a[jj] += *value++; 534b4cc0f5aSSatish Balay } 535b4cc0f5aSSatish Balay } 536fef45726SSatish Balay } else { 537c2760754SSatish Balay for (ii=0; ii<bs; ii++,value+=stepval) { 538c2760754SSatish Balay for (jj=ii; jj<bs2; jj+=bs) { 539fef45726SSatish Balay baij_a[jj] = *value++; 540fef45726SSatish Balay } 541fef45726SSatish Balay } 542fef45726SSatish Balay } 5430bdbc534SSatish Balay } else { 5440bdbc534SSatish Balay value = v + j*(stepval+bs)*bs + i*bs; 545fef45726SSatish Balay if (addv == ADD_VALUES) { 546b4cc0f5aSSatish Balay for (ii=0; ii<bs; ii++,value+=stepval,baij_a+=bs) { 5470bdbc534SSatish Balay for (jj=0; jj<bs; jj++) { 548fef45726SSatish Balay baij_a[jj] += *value++; 549fef45726SSatish Balay } 550fef45726SSatish Balay } 551fef45726SSatish Balay } else { 552fef45726SSatish Balay for (ii=0; ii<bs; ii++,value+=stepval,baij_a+=bs) { 553fef45726SSatish Balay for (jj=0; jj<bs; jj++) { 554fef45726SSatish Balay baij_a[jj] = *value++; 555fef45726SSatish Balay } 556b4cc0f5aSSatish Balay } 5570bdbc534SSatish Balay } 5580bdbc534SSatish Balay } 5590bdbc534SSatish Balay } 5600bdbc534SSatish Balay } else { 5610bdbc534SSatish Balay if (!baij->donotstash) { 5620bdbc534SSatish Balay if (roworiented) { 5638798bf22SSatish Balay ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 5640bdbc534SSatish Balay } else { 5658798bf22SSatish Balay ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 5660bdbc534SSatish Balay } 5670bdbc534SSatish Balay } 5680bdbc534SSatish Balay } 5690bdbc534SSatish Balay } 5702515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 571187ce0cbSSatish Balay baij->ht_total_ct = total_ct; 572187ce0cbSSatish Balay baij->ht_insert_ct = insert_ct; 573187ce0cbSSatish Balay #endif 5740bdbc534SSatish Balay PetscFunctionReturn(0); 5750bdbc534SSatish Balay } 576133cdb44SSatish Balay 5774a2ae208SSatish Balay #undef __FUNCT__ 5784a2ae208SSatish Balay #define __FUNCT__ "MatGetValues_MPIBAIJ" 579b24ad042SBarry Smith PetscErrorCode MatGetValues_MPIBAIJ(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[]) 580d6de1c52SSatish Balay { 581d6de1c52SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 5826849ba73SBarry Smith PetscErrorCode ierr; 583d0f46423SBarry Smith PetscInt bs=mat->rmap->bs,i,j,bsrstart = mat->rmap->rstart,bsrend = mat->rmap->rend; 584d0f46423SBarry Smith PetscInt bscstart = mat->cmap->rstart,bscend = mat->cmap->rend,row,col,data; 585d6de1c52SSatish Balay 586133cdb44SSatish Balay PetscFunctionBegin; 587d6de1c52SSatish Balay for (i=0; i<m; i++) { 588e32f2f54SBarry Smith if (idxm[i] < 0) continue; /* SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %D",idxm[i]);*/ 589e32f2f54SBarry Smith if (idxm[i] >= mat->rmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",idxm[i],mat->rmap->N-1); 590d6de1c52SSatish Balay if (idxm[i] >= bsrstart && idxm[i] < bsrend) { 591d6de1c52SSatish Balay row = idxm[i] - bsrstart; 592d6de1c52SSatish Balay for (j=0; j<n; j++) { 593e32f2f54SBarry Smith if (idxn[j] < 0) continue; /* SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative column: %D",idxn[j]); */ 594e32f2f54SBarry Smith if (idxn[j] >= mat->cmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",idxn[j],mat->cmap->N-1); 595d6de1c52SSatish Balay if (idxn[j] >= bscstart && idxn[j] < bscend){ 596d6de1c52SSatish Balay col = idxn[j] - bscstart; 59798dd23e9SBarry Smith ierr = MatGetValues_SeqBAIJ(baij->A,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr); 598d64ed03dSBarry Smith } else { 599905e6a2fSBarry Smith if (!baij->colmap) { 600905e6a2fSBarry Smith ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 601905e6a2fSBarry Smith } 602aa482453SBarry Smith #if defined (PETSC_USE_CTABLE) 6030f5bd95cSBarry Smith ierr = PetscTableFind(baij->colmap,idxn[j]/bs+1,&data);CHKERRQ(ierr); 604fa46199cSSatish Balay data --; 60548e59246SSatish Balay #else 60648e59246SSatish Balay data = baij->colmap[idxn[j]/bs]-1; 60748e59246SSatish Balay #endif 60848e59246SSatish Balay if((data < 0) || (baij->garray[data/bs] != idxn[j]/bs)) *(v+i*n+j) = 0.0; 609d9d09a02SSatish Balay else { 61048e59246SSatish Balay col = data + idxn[j]%bs; 61198dd23e9SBarry Smith ierr = MatGetValues_SeqBAIJ(baij->B,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr); 612d6de1c52SSatish Balay } 613d6de1c52SSatish Balay } 614d6de1c52SSatish Balay } 615d64ed03dSBarry Smith } else { 616e32f2f54SBarry Smith SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local values currently supported"); 617d6de1c52SSatish Balay } 618d6de1c52SSatish Balay } 6193a40ed3dSBarry Smith PetscFunctionReturn(0); 620d6de1c52SSatish Balay } 621d6de1c52SSatish Balay 6224a2ae208SSatish Balay #undef __FUNCT__ 6234a2ae208SSatish Balay #define __FUNCT__ "MatNorm_MPIBAIJ" 624dfbe8321SBarry Smith PetscErrorCode MatNorm_MPIBAIJ(Mat mat,NormType type,PetscReal *nrm) 625d6de1c52SSatish Balay { 626d6de1c52SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 627d6de1c52SSatish Balay Mat_SeqBAIJ *amat = (Mat_SeqBAIJ*)baij->A->data,*bmat = (Mat_SeqBAIJ*)baij->B->data; 628dfbe8321SBarry Smith PetscErrorCode ierr; 629d0f46423SBarry Smith PetscInt i,j,bs2=baij->bs2,bs=baij->A->rmap->bs,nz,row,col; 630329f5518SBarry Smith PetscReal sum = 0.0; 6313eda8832SBarry Smith MatScalar *v; 632d6de1c52SSatish Balay 633d64ed03dSBarry Smith PetscFunctionBegin; 634d6de1c52SSatish Balay if (baij->size == 1) { 635064f8208SBarry Smith ierr = MatNorm(baij->A,type,nrm);CHKERRQ(ierr); 636d6de1c52SSatish Balay } else { 637d6de1c52SSatish Balay if (type == NORM_FROBENIUS) { 638d6de1c52SSatish Balay v = amat->a; 6398a62d963SHong Zhang nz = amat->nz*bs2; 6408a62d963SHong Zhang for (i=0; i<nz; i++) { 641aa482453SBarry Smith #if defined(PETSC_USE_COMPLEX) 642329f5518SBarry Smith sum += PetscRealPart(PetscConj(*v)*(*v)); v++; 643d6de1c52SSatish Balay #else 644d6de1c52SSatish Balay sum += (*v)*(*v); v++; 645d6de1c52SSatish Balay #endif 646d6de1c52SSatish Balay } 647d6de1c52SSatish Balay v = bmat->a; 6488a62d963SHong Zhang nz = bmat->nz*bs2; 6498a62d963SHong Zhang for (i=0; i<nz; i++) { 650aa482453SBarry Smith #if defined(PETSC_USE_COMPLEX) 651329f5518SBarry Smith sum += PetscRealPart(PetscConj(*v)*(*v)); v++; 652d6de1c52SSatish Balay #else 653d6de1c52SSatish Balay sum += (*v)*(*v); v++; 654d6de1c52SSatish Balay #endif 655d6de1c52SSatish Balay } 656d9822059SBarry Smith ierr = MPI_Allreduce(&sum,nrm,1,MPIU_REAL,MPIU_SUM,((PetscObject)mat)->comm);CHKERRQ(ierr); 6578f1a2a5eSBarry Smith *nrm = PetscSqrtReal(*nrm); 6588a62d963SHong Zhang } else if (type == NORM_1) { /* max column sum */ 6598a62d963SHong Zhang PetscReal *tmp,*tmp2; 660899cda47SBarry Smith PetscInt *jj,*garray=baij->garray,cstart=baij->rstartbs; 661fca92195SBarry Smith ierr = PetscMalloc2(mat->cmap->N,PetscReal,&tmp,mat->cmap->N,PetscReal,&tmp2);CHKERRQ(ierr); 662d0f46423SBarry Smith ierr = PetscMemzero(tmp,mat->cmap->N*sizeof(PetscReal));CHKERRQ(ierr); 6638a62d963SHong Zhang v = amat->a; jj = amat->j; 6648a62d963SHong Zhang for (i=0; i<amat->nz; i++) { 6658a62d963SHong Zhang for (j=0; j<bs; j++){ 6668a62d963SHong Zhang col = bs*(cstart + *jj) + j; /* column index */ 6678a62d963SHong Zhang for (row=0; row<bs; row++){ 6688a62d963SHong Zhang tmp[col] += PetscAbsScalar(*v); v++; 6698a62d963SHong Zhang } 6708a62d963SHong Zhang } 6718a62d963SHong Zhang jj++; 6728a62d963SHong Zhang } 6738a62d963SHong Zhang v = bmat->a; jj = bmat->j; 6748a62d963SHong Zhang for (i=0; i<bmat->nz; i++) { 6758a62d963SHong Zhang for (j=0; j<bs; j++){ 6768a62d963SHong Zhang col = bs*garray[*jj] + j; 6778a62d963SHong Zhang for (row=0; row<bs; row++){ 6788a62d963SHong Zhang tmp[col] += PetscAbsScalar(*v); v++; 6798a62d963SHong Zhang } 6808a62d963SHong Zhang } 6818a62d963SHong Zhang jj++; 6828a62d963SHong Zhang } 683d9822059SBarry Smith ierr = MPI_Allreduce(tmp,tmp2,mat->cmap->N,MPIU_REAL,MPIU_SUM,((PetscObject)mat)->comm);CHKERRQ(ierr); 6848a62d963SHong Zhang *nrm = 0.0; 685d0f46423SBarry Smith for (j=0; j<mat->cmap->N; j++) { 6868a62d963SHong Zhang if (tmp2[j] > *nrm) *nrm = tmp2[j]; 6878a62d963SHong Zhang } 688fca92195SBarry Smith ierr = PetscFree2(tmp,tmp2);CHKERRQ(ierr); 6898a62d963SHong Zhang } else if (type == NORM_INFINITY) { /* max row sum */ 690577dd1f9SKris Buschelman PetscReal *sums; 691cb9801acSJed Brown ierr = PetscMalloc(bs*sizeof(PetscReal),&sums);CHKERRQ(ierr); 6928a62d963SHong Zhang sum = 0.0; 6938a62d963SHong Zhang for (j=0; j<amat->mbs; j++) { 6948a62d963SHong Zhang for (row=0; row<bs; row++) sums[row] = 0.0; 6958a62d963SHong Zhang v = amat->a + bs2*amat->i[j]; 6968a62d963SHong Zhang nz = amat->i[j+1]-amat->i[j]; 6978a62d963SHong Zhang for (i=0; i<nz; i++) { 6988a62d963SHong Zhang for (col=0; col<bs; col++){ 6998a62d963SHong Zhang for (row=0; row<bs; row++){ 7008a62d963SHong Zhang sums[row] += PetscAbsScalar(*v); v++; 7018a62d963SHong Zhang } 7028a62d963SHong Zhang } 7038a62d963SHong Zhang } 7048a62d963SHong Zhang v = bmat->a + bs2*bmat->i[j]; 7058a62d963SHong Zhang nz = bmat->i[j+1]-bmat->i[j]; 7068a62d963SHong Zhang for (i=0; i<nz; i++) { 7078a62d963SHong Zhang for (col=0; col<bs; col++){ 7088a62d963SHong Zhang for (row=0; row<bs; row++){ 7098a62d963SHong Zhang sums[row] += PetscAbsScalar(*v); v++; 7108a62d963SHong Zhang } 7118a62d963SHong Zhang } 7128a62d963SHong Zhang } 7138a62d963SHong Zhang for (row=0; row<bs; row++){ 7148a62d963SHong Zhang if (sums[row] > sum) sum = sums[row]; 7158a62d963SHong Zhang } 7168a62d963SHong Zhang } 717d9822059SBarry Smith ierr = MPI_Allreduce(&sum,nrm,1,MPIU_REAL,MPIU_MAX,((PetscObject)mat)->comm);CHKERRQ(ierr); 718577dd1f9SKris Buschelman ierr = PetscFree(sums);CHKERRQ(ierr); 719e7e72b3dSBarry Smith } else SETERRQ(((PetscObject)mat)->comm,PETSC_ERR_SUP,"No support for this norm yet"); 720d64ed03dSBarry Smith } 7213a40ed3dSBarry Smith PetscFunctionReturn(0); 722d6de1c52SSatish Balay } 72357b952d6SSatish Balay 724fef45726SSatish Balay /* 725fef45726SSatish Balay Creates the hash table, and sets the table 726fef45726SSatish Balay This table is created only once. 727fef45726SSatish Balay If new entried need to be added to the matrix 728fef45726SSatish Balay then the hash table has to be destroyed and 729fef45726SSatish Balay recreated. 730fef45726SSatish Balay */ 7314a2ae208SSatish Balay #undef __FUNCT__ 7324a2ae208SSatish Balay #define __FUNCT__ "MatCreateHashTable_MPIBAIJ_Private" 733dfbe8321SBarry Smith PetscErrorCode MatCreateHashTable_MPIBAIJ_Private(Mat mat,PetscReal factor) 734596b8d2eSBarry Smith { 735596b8d2eSBarry Smith Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 736596b8d2eSBarry Smith Mat A = baij->A,B=baij->B; 737596b8d2eSBarry Smith Mat_SeqBAIJ *a=(Mat_SeqBAIJ *)A->data,*b=(Mat_SeqBAIJ *)B->data; 738b24ad042SBarry Smith PetscInt i,j,k,nz=a->nz+b->nz,h1,*ai=a->i,*aj=a->j,*bi=b->i,*bj=b->j; 7396849ba73SBarry Smith PetscErrorCode ierr; 740fca92195SBarry Smith PetscInt ht_size,bs2=baij->bs2,rstart=baij->rstartbs; 741899cda47SBarry Smith PetscInt cstart=baij->cstartbs,*garray=baij->garray,row,col,Nbs=baij->Nbs; 742b24ad042SBarry Smith PetscInt *HT,key; 7433eda8832SBarry Smith MatScalar **HD; 744329f5518SBarry Smith PetscReal tmp; 7456cf91177SBarry Smith #if defined(PETSC_USE_INFO) 746b24ad042SBarry Smith PetscInt ct=0,max=0; 7474a15367fSSatish Balay #endif 748fef45726SSatish Balay 749d64ed03dSBarry Smith PetscFunctionBegin; 750fca92195SBarry Smith if (baij->ht) PetscFunctionReturn(0); 751fef45726SSatish Balay 752fca92195SBarry Smith baij->ht_size = (PetscInt)(factor*nz); 753fca92195SBarry Smith ht_size = baij->ht_size; 7540bdbc534SSatish Balay 755fef45726SSatish Balay /* Allocate Memory for Hash Table */ 756fca92195SBarry Smith ierr = PetscMalloc2(ht_size,MatScalar*,&baij->hd,ht_size,PetscInt,&baij->ht);CHKERRQ(ierr); 757fca92195SBarry Smith ierr = PetscMemzero(baij->hd,ht_size*sizeof(MatScalar*));CHKERRQ(ierr); 758fca92195SBarry Smith ierr = PetscMemzero(baij->ht,ht_size*sizeof(PetscInt));CHKERRQ(ierr); 759b9e4cc15SSatish Balay HD = baij->hd; 760a07cd24cSSatish Balay HT = baij->ht; 761b9e4cc15SSatish Balay 762596b8d2eSBarry Smith /* Loop Over A */ 7630bdbc534SSatish Balay for (i=0; i<a->mbs; i++) { 764596b8d2eSBarry Smith for (j=ai[i]; j<ai[i+1]; j++) { 7650bdbc534SSatish Balay row = i+rstart; 7660bdbc534SSatish Balay col = aj[j]+cstart; 767596b8d2eSBarry Smith 768187ce0cbSSatish Balay key = row*Nbs + col + 1; 769fca92195SBarry Smith h1 = HASH(ht_size,key,tmp); 770fca92195SBarry Smith for (k=0; k<ht_size; k++){ 771fca92195SBarry Smith if (!HT[(h1+k)%ht_size]) { 772fca92195SBarry Smith HT[(h1+k)%ht_size] = key; 773fca92195SBarry Smith HD[(h1+k)%ht_size] = a->a + j*bs2; 774596b8d2eSBarry Smith break; 7756cf91177SBarry Smith #if defined(PETSC_USE_INFO) 776187ce0cbSSatish Balay } else { 777187ce0cbSSatish Balay ct++; 778187ce0cbSSatish Balay #endif 779596b8d2eSBarry Smith } 780187ce0cbSSatish Balay } 7816cf91177SBarry Smith #if defined(PETSC_USE_INFO) 782187ce0cbSSatish Balay if (k> max) max = k; 783187ce0cbSSatish Balay #endif 784596b8d2eSBarry Smith } 785596b8d2eSBarry Smith } 786596b8d2eSBarry Smith /* Loop Over B */ 7870bdbc534SSatish Balay for (i=0; i<b->mbs; i++) { 788596b8d2eSBarry Smith for (j=bi[i]; j<bi[i+1]; j++) { 7890bdbc534SSatish Balay row = i+rstart; 7900bdbc534SSatish Balay col = garray[bj[j]]; 791187ce0cbSSatish Balay key = row*Nbs + col + 1; 792fca92195SBarry Smith h1 = HASH(ht_size,key,tmp); 793fca92195SBarry Smith for (k=0; k<ht_size; k++){ 794fca92195SBarry Smith if (!HT[(h1+k)%ht_size]) { 795fca92195SBarry Smith HT[(h1+k)%ht_size] = key; 796fca92195SBarry Smith HD[(h1+k)%ht_size] = b->a + j*bs2; 797596b8d2eSBarry Smith break; 7986cf91177SBarry Smith #if defined(PETSC_USE_INFO) 799187ce0cbSSatish Balay } else { 800187ce0cbSSatish Balay ct++; 801187ce0cbSSatish Balay #endif 802596b8d2eSBarry Smith } 803187ce0cbSSatish Balay } 8046cf91177SBarry Smith #if defined(PETSC_USE_INFO) 805187ce0cbSSatish Balay if (k> max) max = k; 806187ce0cbSSatish Balay #endif 807596b8d2eSBarry Smith } 808596b8d2eSBarry Smith } 809596b8d2eSBarry Smith 810596b8d2eSBarry Smith /* Print Summary */ 8116cf91177SBarry Smith #if defined(PETSC_USE_INFO) 812fca92195SBarry Smith for (i=0,j=0; i<ht_size; i++) { 813596b8d2eSBarry Smith if (HT[i]) {j++;} 814c38d4ed2SBarry Smith } 8151e2582c4SBarry Smith ierr = PetscInfo2(mat,"Average Search = %5.2f,max search = %D\n",(!j)? 0.0:((PetscReal)(ct+j))/j,max);CHKERRQ(ierr); 816187ce0cbSSatish Balay #endif 8173a40ed3dSBarry Smith PetscFunctionReturn(0); 818596b8d2eSBarry Smith } 81957b952d6SSatish Balay 8204a2ae208SSatish Balay #undef __FUNCT__ 8214a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyBegin_MPIBAIJ" 822dfbe8321SBarry Smith PetscErrorCode MatAssemblyBegin_MPIBAIJ(Mat mat,MatAssemblyType mode) 823bbb85fb3SSatish Balay { 824bbb85fb3SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 825dfbe8321SBarry Smith PetscErrorCode ierr; 826b24ad042SBarry Smith PetscInt nstash,reallocs; 827bbb85fb3SSatish Balay InsertMode addv; 828bbb85fb3SSatish Balay 829bbb85fb3SSatish Balay PetscFunctionBegin; 8304cb17eb5SBarry Smith if (baij->donotstash || mat->nooffprocentries) { 831bbb85fb3SSatish Balay PetscFunctionReturn(0); 832bbb85fb3SSatish Balay } 833bbb85fb3SSatish Balay 834bbb85fb3SSatish Balay /* make sure all processors are either in INSERTMODE or ADDMODE */ 8357adad957SLisandro Dalcin ierr = MPI_Allreduce(&mat->insertmode,&addv,1,MPI_INT,MPI_BOR,((PetscObject)mat)->comm);CHKERRQ(ierr); 836e7e72b3dSBarry Smith if (addv == (ADD_VALUES|INSERT_VALUES)) SETERRQ(((PetscObject)mat)->comm,PETSC_ERR_ARG_WRONGSTATE,"Some processors inserted others added"); 837bbb85fb3SSatish Balay mat->insertmode = addv; /* in case this processor had no cache */ 838bbb85fb3SSatish Balay 839d0f46423SBarry Smith ierr = MatStashScatterBegin_Private(mat,&mat->stash,mat->rmap->range);CHKERRQ(ierr); 8401e2582c4SBarry Smith ierr = MatStashScatterBegin_Private(mat,&mat->bstash,baij->rangebs);CHKERRQ(ierr); 8418798bf22SSatish Balay ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr); 8421e2582c4SBarry Smith ierr = PetscInfo2(mat,"Stash has %D entries,uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr); 84346680499SSatish Balay ierr = MatStashGetInfo_Private(&mat->bstash,&nstash,&reallocs);CHKERRQ(ierr); 8441e2582c4SBarry Smith ierr = PetscInfo2(mat,"Block-Stash has %D entries, uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr); 845bbb85fb3SSatish Balay PetscFunctionReturn(0); 846bbb85fb3SSatish Balay } 847bbb85fb3SSatish Balay 8484a2ae208SSatish Balay #undef __FUNCT__ 8494a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyEnd_MPIBAIJ" 850dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_MPIBAIJ(Mat mat,MatAssemblyType mode) 851bbb85fb3SSatish Balay { 852bbb85fb3SSatish Balay Mat_MPIBAIJ *baij=(Mat_MPIBAIJ*)mat->data; 85391c97fd4SSatish Balay Mat_SeqBAIJ *a=(Mat_SeqBAIJ*)baij->A->data; 8546849ba73SBarry Smith PetscErrorCode ierr; 855b24ad042SBarry Smith PetscInt i,j,rstart,ncols,flg,bs2=baij->bs2; 856e44c0bd4SBarry Smith PetscInt *row,*col; 857ace3abfcSBarry Smith PetscBool r1,r2,r3,other_disassembled; 8583eda8832SBarry Smith MatScalar *val; 859bbb85fb3SSatish Balay InsertMode addv = mat->insertmode; 860b24ad042SBarry Smith PetscMPIInt n; 861bbb85fb3SSatish Balay 86291c97fd4SSatish Balay /* do not use 'b=(Mat_SeqBAIJ*)baij->B->data' as B can be reset in disassembly */ 863bbb85fb3SSatish Balay PetscFunctionBegin; 8644cb17eb5SBarry Smith if (!baij->donotstash && !mat->nooffprocentries) { 865a2d1c673SSatish Balay while (1) { 8668798bf22SSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 867a2d1c673SSatish Balay if (!flg) break; 868a2d1c673SSatish Balay 869bbb85fb3SSatish Balay for (i=0; i<n;) { 870bbb85fb3SSatish Balay /* Now identify the consecutive vals belonging to the same row */ 871bbb85fb3SSatish Balay for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; } 872bbb85fb3SSatish Balay if (j < n) ncols = j-i; 873bbb85fb3SSatish Balay else ncols = n-i; 874bbb85fb3SSatish Balay /* Now assemble all these values with a single function call */ 87597e5c40aSBarry Smith ierr = MatSetValues_MPIBAIJ(mat,1,row+i,ncols,col+i,val+i,addv);CHKERRQ(ierr); 876bbb85fb3SSatish Balay i = j; 877bbb85fb3SSatish Balay } 878bbb85fb3SSatish Balay } 8798798bf22SSatish Balay ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr); 880a2d1c673SSatish Balay /* Now process the block-stash. Since the values are stashed column-oriented, 881a2d1c673SSatish Balay set the roworiented flag to column oriented, and after MatSetValues() 882a2d1c673SSatish Balay restore the original flags */ 883a2d1c673SSatish Balay r1 = baij->roworiented; 884a2d1c673SSatish Balay r2 = a->roworiented; 88591c97fd4SSatish Balay r3 = ((Mat_SeqBAIJ*)baij->B->data)->roworiented; 8867c922b88SBarry Smith baij->roworiented = PETSC_FALSE; 8877c922b88SBarry Smith a->roworiented = PETSC_FALSE; 88891c97fd4SSatish Balay (((Mat_SeqBAIJ*)baij->B->data))->roworiented = PETSC_FALSE; /* b->roworiented */ 889a2d1c673SSatish Balay while (1) { 8908798bf22SSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->bstash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 891a2d1c673SSatish Balay if (!flg) break; 892a2d1c673SSatish Balay 893a2d1c673SSatish Balay for (i=0; i<n;) { 894a2d1c673SSatish Balay /* Now identify the consecutive vals belonging to the same row */ 895a2d1c673SSatish Balay for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; } 896a2d1c673SSatish Balay if (j < n) ncols = j-i; 897a2d1c673SSatish Balay else ncols = n-i; 89897e5c40aSBarry Smith ierr = MatSetValuesBlocked_MPIBAIJ(mat,1,row+i,ncols,col+i,val+i*bs2,addv);CHKERRQ(ierr); 899a2d1c673SSatish Balay i = j; 900a2d1c673SSatish Balay } 901a2d1c673SSatish Balay } 9028798bf22SSatish Balay ierr = MatStashScatterEnd_Private(&mat->bstash);CHKERRQ(ierr); 903a2d1c673SSatish Balay baij->roworiented = r1; 904a2d1c673SSatish Balay a->roworiented = r2; 90591c97fd4SSatish Balay ((Mat_SeqBAIJ*)baij->B->data)->roworiented = r3; /* b->roworiented */ 906bbb85fb3SSatish Balay } 907bbb85fb3SSatish Balay 908bbb85fb3SSatish Balay ierr = MatAssemblyBegin(baij->A,mode);CHKERRQ(ierr); 909bbb85fb3SSatish Balay ierr = MatAssemblyEnd(baij->A,mode);CHKERRQ(ierr); 910bbb85fb3SSatish Balay 911bbb85fb3SSatish Balay /* determine if any processor has disassembled, if so we must 912bbb85fb3SSatish Balay also disassemble ourselfs, in order that we may reassemble. */ 913bbb85fb3SSatish Balay /* 914bbb85fb3SSatish Balay if nonzero structure of submatrix B cannot change then we know that 915bbb85fb3SSatish Balay no processor disassembled thus we can skip this stuff 916bbb85fb3SSatish Balay */ 917bbb85fb3SSatish Balay if (!((Mat_SeqBAIJ*)baij->B->data)->nonew) { 9187adad957SLisandro Dalcin ierr = MPI_Allreduce(&mat->was_assembled,&other_disassembled,1,MPI_INT,MPI_PROD,((PetscObject)mat)->comm);CHKERRQ(ierr); 919bbb85fb3SSatish Balay if (mat->was_assembled && !other_disassembled) { 920bbb85fb3SSatish Balay ierr = DisAssemble_MPIBAIJ(mat);CHKERRQ(ierr); 921bbb85fb3SSatish Balay } 922bbb85fb3SSatish Balay } 923bbb85fb3SSatish Balay 924bbb85fb3SSatish Balay if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) { 925bbb85fb3SSatish Balay ierr = MatSetUpMultiply_MPIBAIJ(mat);CHKERRQ(ierr); 926bbb85fb3SSatish Balay } 9274e35b6f3SSatish Balay ierr = MatSetOption(baij->B,MAT_CHECK_COMPRESSED_ROW,PETSC_FALSE);CHKERRQ(ierr); 928bbb85fb3SSatish Balay ierr = MatAssemblyBegin(baij->B,mode);CHKERRQ(ierr); 929bbb85fb3SSatish Balay ierr = MatAssemblyEnd(baij->B,mode);CHKERRQ(ierr); 930bbb85fb3SSatish Balay 9316cf91177SBarry Smith #if defined(PETSC_USE_INFO) 932bbb85fb3SSatish Balay if (baij->ht && mode== MAT_FINAL_ASSEMBLY) { 9331e2582c4SBarry Smith ierr = PetscInfo1(mat,"Average Hash Table Search in MatSetValues = %5.2f\n",((PetscReal)baij->ht_total_ct)/baij->ht_insert_ct);CHKERRQ(ierr); 934bbb85fb3SSatish Balay baij->ht_total_ct = 0; 935bbb85fb3SSatish Balay baij->ht_insert_ct = 0; 936bbb85fb3SSatish Balay } 937bbb85fb3SSatish Balay #endif 938bbb85fb3SSatish Balay if (baij->ht_flag && !baij->ht && mode == MAT_FINAL_ASSEMBLY) { 939bbb85fb3SSatish Balay ierr = MatCreateHashTable_MPIBAIJ_Private(mat,baij->ht_fact);CHKERRQ(ierr); 940bbb85fb3SSatish Balay mat->ops->setvalues = MatSetValues_MPIBAIJ_HT; 941bbb85fb3SSatish Balay mat->ops->setvaluesblocked = MatSetValuesBlocked_MPIBAIJ_HT; 942bbb85fb3SSatish Balay } 943bbb85fb3SSatish Balay 944fca92195SBarry Smith ierr = PetscFree2(baij->rowvalues,baij->rowindices);CHKERRQ(ierr); 945606d414cSSatish Balay baij->rowvalues = 0; 946bbb85fb3SSatish Balay PetscFunctionReturn(0); 947bbb85fb3SSatish Balay } 94857b952d6SSatish Balay 9494a2ae208SSatish Balay #undef __FUNCT__ 9504a2ae208SSatish Balay #define __FUNCT__ "MatView_MPIBAIJ_ASCIIorDraworSocket" 9516849ba73SBarry Smith static PetscErrorCode MatView_MPIBAIJ_ASCIIorDraworSocket(Mat mat,PetscViewer viewer) 95257b952d6SSatish Balay { 95357b952d6SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 954dfbe8321SBarry Smith PetscErrorCode ierr; 955b24ad042SBarry Smith PetscMPIInt size = baij->size,rank = baij->rank; 956d0f46423SBarry Smith PetscInt bs = mat->rmap->bs; 957ace3abfcSBarry Smith PetscBool iascii,isdraw; 958b0a32e0cSBarry Smith PetscViewer sviewer; 959f3ef73ceSBarry Smith PetscViewerFormat format; 96057b952d6SSatish Balay 961d64ed03dSBarry Smith PetscFunctionBegin; 9622692d6eeSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr); 9632692d6eeSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr); 96432077d6dSBarry Smith if (iascii) { 965b0a32e0cSBarry Smith ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr); 966456192e2SBarry Smith if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 9674e220ebcSLois Curfman McInnes MatInfo info; 9687adad957SLisandro Dalcin ierr = MPI_Comm_rank(((PetscObject)mat)->comm,&rank);CHKERRQ(ierr); 969d41123aaSBarry Smith ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr); 9707b23a99aSBarry Smith ierr = PetscViewerASCIISynchronizedAllow(viewer,PETSC_TRUE);CHKERRQ(ierr); 97177431f27SBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Local rows %D nz %D nz alloced %D bs %D mem %D\n", 97216608c43SJed Brown rank,mat->rmap->n,(PetscInt)info.nz_used,(PetscInt)info.nz_allocated,mat->rmap->bs,(PetscInt)info.memory);CHKERRQ(ierr); 973d132466eSBarry Smith ierr = MatGetInfo(baij->A,MAT_LOCAL,&info);CHKERRQ(ierr); 974e6dd01d4SJed Brown ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] on-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used);CHKERRQ(ierr); 975d132466eSBarry Smith ierr = MatGetInfo(baij->B,MAT_LOCAL,&info);CHKERRQ(ierr); 976e6dd01d4SJed Brown ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] off-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used);CHKERRQ(ierr); 977b0a32e0cSBarry Smith ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 9787b23a99aSBarry Smith ierr = PetscViewerASCIISynchronizedAllow(viewer,PETSC_FALSE);CHKERRQ(ierr); 97907d81ca4SBarry Smith ierr = PetscViewerASCIIPrintf(viewer,"Information on VecScatter used in matrix-vector product: \n");CHKERRQ(ierr); 98057b952d6SSatish Balay ierr = VecScatterView(baij->Mvctx,viewer);CHKERRQ(ierr); 9813a40ed3dSBarry Smith PetscFunctionReturn(0); 982fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_INFO) { 98377431f27SBarry Smith ierr = PetscViewerASCIIPrintf(viewer," block size is %D\n",bs);CHKERRQ(ierr); 9843a40ed3dSBarry Smith PetscFunctionReturn(0); 98504929863SHong Zhang } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) { 98604929863SHong Zhang PetscFunctionReturn(0); 98757b952d6SSatish Balay } 98857b952d6SSatish Balay } 98957b952d6SSatish Balay 9900f5bd95cSBarry Smith if (isdraw) { 991b0a32e0cSBarry Smith PetscDraw draw; 992ace3abfcSBarry Smith PetscBool isnull; 993b0a32e0cSBarry Smith ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr); 994b0a32e0cSBarry Smith ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); if (isnull) PetscFunctionReturn(0); 99557b952d6SSatish Balay } 99657b952d6SSatish Balay 99757b952d6SSatish Balay if (size == 1) { 9987adad957SLisandro Dalcin ierr = PetscObjectSetName((PetscObject)baij->A,((PetscObject)mat)->name);CHKERRQ(ierr); 99957b952d6SSatish Balay ierr = MatView(baij->A,viewer);CHKERRQ(ierr); 1000d64ed03dSBarry Smith } else { 100157b952d6SSatish Balay /* assemble the entire matrix onto first processor. */ 100257b952d6SSatish Balay Mat A; 100357b952d6SSatish Balay Mat_SeqBAIJ *Aloc; 1004d0f46423SBarry Smith PetscInt M = mat->rmap->N,N = mat->cmap->N,*ai,*aj,col,i,j,k,*rvals,mbs = baij->mbs; 10053eda8832SBarry Smith MatScalar *a; 100657b952d6SSatish Balay 1007f204ca49SKris Buschelman /* Here we are creating a temporary matrix, so will assume MPIBAIJ is acceptable */ 1008f204ca49SKris Buschelman /* Perhaps this should be the type of mat? */ 10097adad957SLisandro Dalcin ierr = MatCreate(((PetscObject)mat)->comm,&A);CHKERRQ(ierr); 101057b952d6SSatish Balay if (!rank) { 1011f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,M,N,M,N);CHKERRQ(ierr); 1012d64ed03dSBarry Smith } else { 1013f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,0,0,M,N);CHKERRQ(ierr); 101457b952d6SSatish Balay } 1015f204ca49SKris Buschelman ierr = MatSetType(A,MATMPIBAIJ);CHKERRQ(ierr); 1016d0f46423SBarry Smith ierr = MatMPIBAIJSetPreallocation(A,mat->rmap->bs,0,PETSC_NULL,0,PETSC_NULL);CHKERRQ(ierr); 10172b82e772SSatish Balay ierr = MatSetOption(A,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_FALSE);CHKERRQ(ierr); 101852e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,A);CHKERRQ(ierr); 101957b952d6SSatish Balay 102057b952d6SSatish Balay /* copy over the A part */ 102157b952d6SSatish Balay Aloc = (Mat_SeqBAIJ*)baij->A->data; 102257b952d6SSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 1023b24ad042SBarry Smith ierr = PetscMalloc(bs*sizeof(PetscInt),&rvals);CHKERRQ(ierr); 102457b952d6SSatish Balay 102557b952d6SSatish Balay for (i=0; i<mbs; i++) { 1026899cda47SBarry Smith rvals[0] = bs*(baij->rstartbs + i); 102757b952d6SSatish Balay for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; } 102857b952d6SSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 1029899cda47SBarry Smith col = (baij->cstartbs+aj[j])*bs; 103057b952d6SSatish Balay for (k=0; k<bs; k++) { 103197e5c40aSBarry Smith ierr = MatSetValues_MPIBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 1032cee3aa6bSSatish Balay col++; a += bs; 103357b952d6SSatish Balay } 103457b952d6SSatish Balay } 103557b952d6SSatish Balay } 103657b952d6SSatish Balay /* copy over the B part */ 103757b952d6SSatish Balay Aloc = (Mat_SeqBAIJ*)baij->B->data; 103857b952d6SSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 103957b952d6SSatish Balay for (i=0; i<mbs; i++) { 1040899cda47SBarry Smith rvals[0] = bs*(baij->rstartbs + i); 104157b952d6SSatish Balay for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; } 104257b952d6SSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 104357b952d6SSatish Balay col = baij->garray[aj[j]]*bs; 104457b952d6SSatish Balay for (k=0; k<bs; k++) { 104597e5c40aSBarry Smith ierr = MatSetValues_MPIBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 1046cee3aa6bSSatish Balay col++; a += bs; 104757b952d6SSatish Balay } 104857b952d6SSatish Balay } 104957b952d6SSatish Balay } 1050606d414cSSatish Balay ierr = PetscFree(rvals);CHKERRQ(ierr); 10516d4a8577SBarry Smith ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 10526d4a8577SBarry Smith ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 105355843e3eSBarry Smith /* 105455843e3eSBarry Smith Everyone has to call to draw the matrix since the graphics waits are 1055b0a32e0cSBarry Smith synchronized across all processors that share the PetscDraw object 105655843e3eSBarry Smith */ 1057b0a32e0cSBarry Smith ierr = PetscViewerGetSingleton(viewer,&sviewer);CHKERRQ(ierr); 1058f14a1c24SBarry Smith if (!rank) { 10597adad957SLisandro Dalcin ierr = PetscObjectSetName((PetscObject)((Mat_MPIBAIJ*)(A->data))->A,((PetscObject)mat)->name);CHKERRQ(ierr); 10607566de4bSShri Abhyankar /* Set the type name to MATMPIBAIJ so that the correct type can be printed out by PetscObjectPrintClassNamePrefixType() in MatView_SeqBAIJ_ASCII()*/ 10617566de4bSShri Abhyankar PetscStrcpy(((PetscObject)((Mat_MPIBAIJ*)(A->data))->A)->type_name,MATMPIBAIJ); 10626831982aSBarry Smith ierr = MatView(((Mat_MPIBAIJ*)(A->data))->A,sviewer);CHKERRQ(ierr); 106357b952d6SSatish Balay } 1064b0a32e0cSBarry Smith ierr = PetscViewerRestoreSingleton(viewer,&sviewer);CHKERRQ(ierr); 10656bf464f9SBarry Smith ierr = MatDestroy(&A);CHKERRQ(ierr); 106657b952d6SSatish Balay } 10673a40ed3dSBarry Smith PetscFunctionReturn(0); 106857b952d6SSatish Balay } 106957b952d6SSatish Balay 10704a2ae208SSatish Balay #undef __FUNCT__ 1071660746e0SBarry Smith #define __FUNCT__ "MatView_MPIBAIJ_Binary" 1072660746e0SBarry Smith static PetscErrorCode MatView_MPIBAIJ_Binary(Mat mat,PetscViewer viewer) 1073660746e0SBarry Smith { 1074660746e0SBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)mat->data; 1075660746e0SBarry Smith Mat_SeqBAIJ* A = (Mat_SeqBAIJ*)a->A->data; 1076660746e0SBarry Smith Mat_SeqBAIJ* B = (Mat_SeqBAIJ*)a->B->data; 1077660746e0SBarry Smith PetscErrorCode ierr; 10785f48b12bSBarry Smith PetscInt i,*row_lens,*crow_lens,bs = mat->rmap->bs,j,k,bs2=a->bs2,header[4],nz,rlen; 1079e96a6426SSatish Balay PetscInt *range=0,nzmax,*column_indices,cnt,col,*garray = a->garray,cstart = mat->cmap->rstart/bs,len,pcnt,l,ll; 1080660746e0SBarry Smith int fd; 1081660746e0SBarry Smith PetscScalar *column_values; 1082660746e0SBarry Smith FILE *file; 1083660746e0SBarry Smith PetscMPIInt rank,size,tag = ((PetscObject)viewer)->tag; 1084638eb2ebSBarry Smith PetscInt message_count,flowcontrolcount; 1085660746e0SBarry Smith 1086660746e0SBarry Smith PetscFunctionBegin; 1087660746e0SBarry Smith ierr = MPI_Comm_rank(((PetscObject)mat)->comm,&rank);CHKERRQ(ierr); 1088660746e0SBarry Smith ierr = MPI_Comm_size(((PetscObject)mat)->comm,&size);CHKERRQ(ierr); 1089660746e0SBarry Smith nz = bs2*(A->nz + B->nz); 1090660746e0SBarry Smith rlen = mat->rmap->n; 1091660746e0SBarry Smith if (!rank) { 1092660746e0SBarry Smith header[0] = MAT_FILE_CLASSID; 1093660746e0SBarry Smith header[1] = mat->rmap->N; 1094660746e0SBarry Smith header[2] = mat->cmap->N; 1095660746e0SBarry Smith ierr = MPI_Reduce(&nz,&header[3],1,MPIU_INT,MPI_SUM,0,((PetscObject)mat)->comm);CHKERRQ(ierr); 1096660746e0SBarry Smith ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr); 1097660746e0SBarry Smith ierr = PetscBinaryWrite(fd,header,4,PETSC_INT,PETSC_TRUE);CHKERRQ(ierr); 1098660746e0SBarry Smith /* get largest number of rows any processor has */ 1099660746e0SBarry Smith range = mat->rmap->range; 1100660746e0SBarry Smith for (i=1; i<size; i++) { 1101660746e0SBarry Smith rlen = PetscMax(rlen,range[i+1] - range[i]); 1102660746e0SBarry Smith } 1103660746e0SBarry Smith } else { 1104660746e0SBarry Smith ierr = MPI_Reduce(&nz,0,1,MPIU_INT,MPI_SUM,0,((PetscObject)mat)->comm);CHKERRQ(ierr); 1105660746e0SBarry Smith } 1106660746e0SBarry Smith 1107660746e0SBarry Smith ierr = PetscMalloc((rlen/bs)*sizeof(PetscInt),&crow_lens);CHKERRQ(ierr); 1108660746e0SBarry Smith /* compute lengths of each row */ 1109660746e0SBarry Smith for (i=0; i<a->mbs; i++) { 1110660746e0SBarry Smith crow_lens[i] = A->i[i+1] - A->i[i] + B->i[i+1] - B->i[i]; 1111660746e0SBarry Smith } 1112660746e0SBarry Smith /* store the row lengths to the file */ 1113638eb2ebSBarry Smith ierr = PetscViewerFlowControlStart(viewer,&message_count,&flowcontrolcount);CHKERRQ(ierr); 1114660746e0SBarry Smith if (!rank) { 1115660746e0SBarry Smith MPI_Status status; 1116660746e0SBarry Smith ierr = PetscMalloc(rlen*sizeof(PetscInt),&row_lens);CHKERRQ(ierr); 1117660746e0SBarry Smith rlen = (range[1] - range[0])/bs; 1118660746e0SBarry Smith for (i=0; i<rlen; i++) { 1119660746e0SBarry Smith for (j=0; j<bs; j++) { 1120660746e0SBarry Smith row_lens[i*bs+j] = bs*crow_lens[i]; 1121660746e0SBarry Smith } 1122660746e0SBarry Smith } 1123660746e0SBarry Smith ierr = PetscBinaryWrite(fd,row_lens,bs*rlen,PETSC_INT,PETSC_TRUE);CHKERRQ(ierr); 1124660746e0SBarry Smith for (i=1; i<size; i++) { 1125660746e0SBarry Smith rlen = (range[i+1] - range[i])/bs; 1126638eb2ebSBarry Smith ierr = PetscViewerFlowControlStepMaster(viewer,i,message_count,flowcontrolcount);CHKERRQ(ierr); 1127660746e0SBarry Smith ierr = MPI_Recv(crow_lens,rlen,MPIU_INT,i,tag,((PetscObject)mat)->comm,&status);CHKERRQ(ierr); 1128660746e0SBarry Smith for (k=0; k<rlen; k++) { 1129660746e0SBarry Smith for (j=0; j<bs; j++) { 1130660746e0SBarry Smith row_lens[k*bs+j] = bs*crow_lens[k]; 1131660746e0SBarry Smith } 1132660746e0SBarry Smith } 1133660746e0SBarry Smith ierr = PetscBinaryWrite(fd,row_lens,bs*rlen,PETSC_INT,PETSC_TRUE);CHKERRQ(ierr); 1134660746e0SBarry Smith } 1135638eb2ebSBarry Smith ierr = PetscViewerFlowControlEndMaster(viewer,message_count);CHKERRQ(ierr); 1136660746e0SBarry Smith ierr = PetscFree(row_lens);CHKERRQ(ierr); 1137660746e0SBarry Smith } else { 1138638eb2ebSBarry Smith ierr = PetscViewerFlowControlStepWorker(viewer,rank,message_count);CHKERRQ(ierr); 1139660746e0SBarry Smith ierr = MPI_Send(crow_lens,mat->rmap->n/bs,MPIU_INT,0,tag,((PetscObject)mat)->comm);CHKERRQ(ierr); 1140638eb2ebSBarry Smith ierr = PetscViewerFlowControlEndWorker(viewer,message_count);CHKERRQ(ierr); 1141660746e0SBarry Smith } 1142660746e0SBarry Smith ierr = PetscFree(crow_lens);CHKERRQ(ierr); 1143660746e0SBarry Smith 1144660746e0SBarry Smith /* load up the local column indices. Include for all rows not just one for each block row since process 0 does not have the 1145660746e0SBarry Smith information needed to make it for each row from a block row. This does require more communication but still not more than 1146660746e0SBarry Smith the communication needed for the nonzero values */ 1147660746e0SBarry Smith nzmax = nz; /* space a largest processor needs */ 1148660746e0SBarry Smith ierr = MPI_Reduce(&nz,&nzmax,1,MPIU_INT,MPI_MAX,0,((PetscObject)mat)->comm);CHKERRQ(ierr); 1149660746e0SBarry Smith ierr = PetscMalloc(nzmax*sizeof(PetscInt),&column_indices);CHKERRQ(ierr); 1150660746e0SBarry Smith cnt = 0; 1151660746e0SBarry Smith for (i=0; i<a->mbs; i++) { 1152660746e0SBarry Smith pcnt = cnt; 1153660746e0SBarry Smith for (j=B->i[i]; j<B->i[i+1]; j++) { 1154660746e0SBarry Smith if ( (col = garray[B->j[j]]) > cstart) break; 1155660746e0SBarry Smith for (l=0; l<bs; l++) { 1156660746e0SBarry Smith column_indices[cnt++] = bs*col+l; 1157660746e0SBarry Smith } 1158660746e0SBarry Smith } 1159660746e0SBarry Smith for (k=A->i[i]; k<A->i[i+1]; k++) { 1160660746e0SBarry Smith for (l=0; l<bs; l++) { 1161660746e0SBarry Smith column_indices[cnt++] = bs*(A->j[k] + cstart)+l; 1162660746e0SBarry Smith } 1163660746e0SBarry Smith } 1164660746e0SBarry Smith for (; j<B->i[i+1]; j++) { 1165660746e0SBarry Smith for (l=0; l<bs; l++) { 1166660746e0SBarry Smith column_indices[cnt++] = bs*garray[B->j[j]]+l; 1167660746e0SBarry Smith } 1168660746e0SBarry Smith } 1169660746e0SBarry Smith len = cnt - pcnt; 1170660746e0SBarry Smith for (k=1; k<bs; k++) { 1171660746e0SBarry Smith ierr = PetscMemcpy(&column_indices[cnt],&column_indices[pcnt],len*sizeof(PetscInt));CHKERRQ(ierr); 1172660746e0SBarry Smith cnt += len; 1173660746e0SBarry Smith } 1174660746e0SBarry Smith } 1175660746e0SBarry Smith if (cnt != nz) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_LIB,"Internal PETSc error: cnt = %D nz = %D",cnt,nz); 1176660746e0SBarry Smith 1177660746e0SBarry Smith /* store the columns to the file */ 1178638eb2ebSBarry Smith ierr = PetscViewerFlowControlStart(viewer,&message_count,&flowcontrolcount);CHKERRQ(ierr); 1179660746e0SBarry Smith if (!rank) { 1180660746e0SBarry Smith MPI_Status status; 1181660746e0SBarry Smith ierr = PetscBinaryWrite(fd,column_indices,nz,PETSC_INT,PETSC_TRUE);CHKERRQ(ierr); 1182660746e0SBarry Smith for (i=1; i<size; i++) { 1183638eb2ebSBarry Smith ierr = PetscViewerFlowControlStepMaster(viewer,i,message_count,flowcontrolcount);CHKERRQ(ierr); 1184660746e0SBarry Smith ierr = MPI_Recv(&cnt,1,MPIU_INT,i,tag,((PetscObject)mat)->comm,&status);CHKERRQ(ierr); 1185660746e0SBarry Smith ierr = MPI_Recv(column_indices,cnt,MPIU_INT,i,tag,((PetscObject)mat)->comm,&status);CHKERRQ(ierr); 1186660746e0SBarry Smith ierr = PetscBinaryWrite(fd,column_indices,cnt,PETSC_INT,PETSC_TRUE);CHKERRQ(ierr); 1187660746e0SBarry Smith } 1188638eb2ebSBarry Smith ierr = PetscViewerFlowControlEndMaster(viewer,message_count);CHKERRQ(ierr); 1189660746e0SBarry Smith } else { 1190638eb2ebSBarry Smith ierr = PetscViewerFlowControlStepWorker(viewer,rank,message_count);CHKERRQ(ierr); 1191660746e0SBarry Smith ierr = MPI_Send(&cnt,1,MPIU_INT,0,tag,((PetscObject)mat)->comm);CHKERRQ(ierr); 1192660746e0SBarry Smith ierr = MPI_Send(column_indices,cnt,MPIU_INT,0,tag,((PetscObject)mat)->comm);CHKERRQ(ierr); 1193638eb2ebSBarry Smith ierr = PetscViewerFlowControlEndWorker(viewer,message_count);CHKERRQ(ierr); 1194660746e0SBarry Smith } 1195660746e0SBarry Smith ierr = PetscFree(column_indices);CHKERRQ(ierr); 1196660746e0SBarry Smith 1197660746e0SBarry Smith /* load up the numerical values */ 1198660746e0SBarry Smith ierr = PetscMalloc(nzmax*sizeof(PetscScalar),&column_values);CHKERRQ(ierr); 1199660746e0SBarry Smith cnt = 0; 1200660746e0SBarry Smith for (i=0; i<a->mbs; i++) { 1201660746e0SBarry Smith rlen = bs*(B->i[i+1] - B->i[i] + A->i[i+1] - A->i[i]); 1202660746e0SBarry Smith for (j=B->i[i]; j<B->i[i+1]; j++) { 1203660746e0SBarry Smith if ( garray[B->j[j]] > cstart) break; 1204660746e0SBarry Smith for (l=0; l<bs; l++) { 1205660746e0SBarry Smith for (ll=0; ll<bs; ll++) { 1206660746e0SBarry Smith column_values[cnt + l*rlen + ll] = B->a[bs2*j+l+bs*ll]; 1207660746e0SBarry Smith } 1208660746e0SBarry Smith } 1209660746e0SBarry Smith cnt += bs; 1210660746e0SBarry Smith } 1211660746e0SBarry Smith for (k=A->i[i]; k<A->i[i+1]; k++) { 1212660746e0SBarry Smith for (l=0; l<bs; l++) { 1213660746e0SBarry Smith for (ll=0; ll<bs; ll++) { 1214660746e0SBarry Smith column_values[cnt + l*rlen + ll] = A->a[bs2*k+l+bs*ll]; 1215660746e0SBarry Smith } 1216660746e0SBarry Smith } 1217660746e0SBarry Smith cnt += bs; 1218660746e0SBarry Smith } 1219660746e0SBarry Smith for (; j<B->i[i+1]; j++) { 1220660746e0SBarry Smith for (l=0; l<bs; l++) { 1221660746e0SBarry Smith for (ll=0; ll<bs; ll++) { 1222660746e0SBarry Smith column_values[cnt + l*rlen + ll] = B->a[bs2*j+l+bs*ll]; 1223660746e0SBarry Smith } 1224660746e0SBarry Smith } 1225660746e0SBarry Smith cnt += bs; 1226660746e0SBarry Smith } 1227660746e0SBarry Smith cnt += (bs-1)*rlen; 1228660746e0SBarry Smith } 1229660746e0SBarry Smith if (cnt != nz) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Internal PETSc error: cnt = %D nz = %D",cnt,nz); 1230660746e0SBarry Smith 1231660746e0SBarry Smith /* store the column values to the file */ 1232638eb2ebSBarry Smith ierr = PetscViewerFlowControlStart(viewer,&message_count,&flowcontrolcount);CHKERRQ(ierr); 1233660746e0SBarry Smith if (!rank) { 1234660746e0SBarry Smith MPI_Status status; 1235660746e0SBarry Smith ierr = PetscBinaryWrite(fd,column_values,nz,PETSC_SCALAR,PETSC_TRUE);CHKERRQ(ierr); 1236660746e0SBarry Smith for (i=1; i<size; i++) { 1237638eb2ebSBarry Smith ierr = PetscViewerFlowControlStepMaster(viewer,i,message_count,flowcontrolcount);CHKERRQ(ierr); 1238660746e0SBarry Smith ierr = MPI_Recv(&cnt,1,MPIU_INT,i,tag,((PetscObject)mat)->comm,&status);CHKERRQ(ierr); 1239660746e0SBarry Smith ierr = MPI_Recv(column_values,cnt,MPIU_SCALAR,i,tag,((PetscObject)mat)->comm,&status);CHKERRQ(ierr); 1240660746e0SBarry Smith ierr = PetscBinaryWrite(fd,column_values,cnt,PETSC_SCALAR,PETSC_TRUE);CHKERRQ(ierr); 1241660746e0SBarry Smith } 1242638eb2ebSBarry Smith ierr = PetscViewerFlowControlEndMaster(viewer,message_count);CHKERRQ(ierr); 1243660746e0SBarry Smith } else { 1244638eb2ebSBarry Smith ierr = PetscViewerFlowControlStepWorker(viewer,rank,message_count);CHKERRQ(ierr); 1245660746e0SBarry Smith ierr = MPI_Send(&nz,1,MPIU_INT,0,tag,((PetscObject)mat)->comm);CHKERRQ(ierr); 1246660746e0SBarry Smith ierr = MPI_Send(column_values,nz,MPIU_SCALAR,0,tag,((PetscObject)mat)->comm);CHKERRQ(ierr); 1247638eb2ebSBarry Smith ierr = PetscViewerFlowControlEndWorker(viewer,message_count);CHKERRQ(ierr); 1248660746e0SBarry Smith } 1249660746e0SBarry Smith ierr = PetscFree(column_values);CHKERRQ(ierr); 1250660746e0SBarry Smith 1251660746e0SBarry Smith ierr = PetscViewerBinaryGetInfoPointer(viewer,&file);CHKERRQ(ierr); 1252660746e0SBarry Smith if (file) { 1253660746e0SBarry Smith fprintf(file,"-matload_block_size %d\n",(int)mat->rmap->bs); 1254660746e0SBarry Smith } 1255660746e0SBarry Smith PetscFunctionReturn(0); 1256660746e0SBarry Smith } 1257660746e0SBarry Smith 1258660746e0SBarry Smith #undef __FUNCT__ 12594a2ae208SSatish Balay #define __FUNCT__ "MatView_MPIBAIJ" 1260dfbe8321SBarry Smith PetscErrorCode MatView_MPIBAIJ(Mat mat,PetscViewer viewer) 126157b952d6SSatish Balay { 1262dfbe8321SBarry Smith PetscErrorCode ierr; 1263ace3abfcSBarry Smith PetscBool iascii,isdraw,issocket,isbinary; 126457b952d6SSatish Balay 1265d64ed03dSBarry Smith PetscFunctionBegin; 12662692d6eeSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr); 12672692d6eeSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr); 12682692d6eeSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSCVIEWERSOCKET,&issocket);CHKERRQ(ierr); 12692692d6eeSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary);CHKERRQ(ierr); 1270660746e0SBarry Smith if (iascii || isdraw || issocket) { 12717b2a1423SBarry Smith ierr = MatView_MPIBAIJ_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr); 1272660746e0SBarry Smith } else if (isbinary) { 1273660746e0SBarry Smith ierr = MatView_MPIBAIJ_Binary(mat,viewer);CHKERRQ(ierr); 12745cd90555SBarry Smith } else { 127565e19b50SBarry Smith SETERRQ1(((PetscObject)mat)->comm,PETSC_ERR_SUP,"Viewer type %s not supported by MPIBAIJ matrices",((PetscObject)viewer)->type_name); 127657b952d6SSatish Balay } 12773a40ed3dSBarry Smith PetscFunctionReturn(0); 127857b952d6SSatish Balay } 127957b952d6SSatish Balay 12804a2ae208SSatish Balay #undef __FUNCT__ 12814a2ae208SSatish Balay #define __FUNCT__ "MatDestroy_MPIBAIJ" 1282dfbe8321SBarry Smith PetscErrorCode MatDestroy_MPIBAIJ(Mat mat) 128379bdfe76SSatish Balay { 128479bdfe76SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 1285dfbe8321SBarry Smith PetscErrorCode ierr; 128679bdfe76SSatish Balay 1287d64ed03dSBarry Smith PetscFunctionBegin; 1288aa482453SBarry Smith #if defined(PETSC_USE_LOG) 1289d0f46423SBarry Smith PetscLogObjectState((PetscObject)mat,"Rows=%D,Cols=%D",mat->rmap->N,mat->cmap->N); 129079bdfe76SSatish Balay #endif 12918798bf22SSatish Balay ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr); 12928798bf22SSatish Balay ierr = MatStashDestroy_Private(&mat->bstash);CHKERRQ(ierr); 12936bf464f9SBarry Smith ierr = MatDestroy(&baij->A);CHKERRQ(ierr); 12946bf464f9SBarry Smith ierr = MatDestroy(&baij->B);CHKERRQ(ierr); 1295aa482453SBarry Smith #if defined (PETSC_USE_CTABLE) 12966bc0bbbfSBarry Smith ierr = PetscTableDestroy(&baij->colmap);CHKERRQ(ierr); 129748e59246SSatish Balay #else 129805b42c5fSBarry Smith ierr = PetscFree(baij->colmap);CHKERRQ(ierr); 129948e59246SSatish Balay #endif 130005b42c5fSBarry Smith ierr = PetscFree(baij->garray);CHKERRQ(ierr); 13016bf464f9SBarry Smith ierr = VecDestroy(&baij->lvec);CHKERRQ(ierr); 13026bf464f9SBarry Smith ierr = VecScatterDestroy(&baij->Mvctx);CHKERRQ(ierr); 1303fca92195SBarry Smith ierr = PetscFree2(baij->rowvalues,baij->rowindices);CHKERRQ(ierr); 130405b42c5fSBarry Smith ierr = PetscFree(baij->barray);CHKERRQ(ierr); 1305fca92195SBarry Smith ierr = PetscFree2(baij->hd,baij->ht);CHKERRQ(ierr); 1306899cda47SBarry Smith ierr = PetscFree(baij->rangebs);CHKERRQ(ierr); 1307bf0cc555SLisandro Dalcin ierr = PetscFree(mat->data);CHKERRQ(ierr); 1308901853e0SKris Buschelman 1309dbd8c25aSHong Zhang ierr = PetscObjectChangeTypeName((PetscObject)mat,0);CHKERRQ(ierr); 1310901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatStoreValues_C","",PETSC_NULL);CHKERRQ(ierr); 1311901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatRetrieveValues_C","",PETSC_NULL);CHKERRQ(ierr); 1312901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatGetDiagonalBlock_C","",PETSC_NULL);CHKERRQ(ierr); 1313901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPIBAIJSetPreallocation_C","",PETSC_NULL);CHKERRQ(ierr); 1314aac34f13SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPIBAIJSetPreallocationCSR_C","",PETSC_NULL);CHKERRQ(ierr); 1315901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDiagonalScaleLocal_C","",PETSC_NULL);CHKERRQ(ierr); 1316901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatSetHashTableFactor_C","",PETSC_NULL);CHKERRQ(ierr); 1317ad5247fdSHong Zhang ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpibaij_mpisbaij_C","",PETSC_NULL);CHKERRQ(ierr); 1318c0cdd4a1SDahai Guo ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpibaij_mpibstrm_C","",PETSC_NULL);CHKERRQ(ierr); 13193a40ed3dSBarry Smith PetscFunctionReturn(0); 132079bdfe76SSatish Balay } 132179bdfe76SSatish Balay 13224a2ae208SSatish Balay #undef __FUNCT__ 13234a2ae208SSatish Balay #define __FUNCT__ "MatMult_MPIBAIJ" 1324dfbe8321SBarry Smith PetscErrorCode MatMult_MPIBAIJ(Mat A,Vec xx,Vec yy) 1325cee3aa6bSSatish Balay { 1326cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1327dfbe8321SBarry Smith PetscErrorCode ierr; 1328b24ad042SBarry Smith PetscInt nt; 1329cee3aa6bSSatish Balay 1330d64ed03dSBarry Smith PetscFunctionBegin; 1331e1311b90SBarry Smith ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr); 1332e7e72b3dSBarry Smith if (nt != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx"); 1333e1311b90SBarry Smith ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr); 1334e7e72b3dSBarry Smith if (nt != A->rmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible parition of A and yy"); 1335ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1336f830108cSBarry Smith ierr = (*a->A->ops->mult)(a->A,xx,yy);CHKERRQ(ierr); 1337ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1338f830108cSBarry Smith ierr = (*a->B->ops->multadd)(a->B,a->lvec,yy,yy);CHKERRQ(ierr); 13393a40ed3dSBarry Smith PetscFunctionReturn(0); 1340cee3aa6bSSatish Balay } 1341cee3aa6bSSatish Balay 13424a2ae208SSatish Balay #undef __FUNCT__ 13434a2ae208SSatish Balay #define __FUNCT__ "MatMultAdd_MPIBAIJ" 1344dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPIBAIJ(Mat A,Vec xx,Vec yy,Vec zz) 1345cee3aa6bSSatish Balay { 1346cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1347dfbe8321SBarry Smith PetscErrorCode ierr; 1348d64ed03dSBarry Smith 1349d64ed03dSBarry Smith PetscFunctionBegin; 1350ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1351f830108cSBarry Smith ierr = (*a->A->ops->multadd)(a->A,xx,yy,zz);CHKERRQ(ierr); 1352ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1353f830108cSBarry Smith ierr = (*a->B->ops->multadd)(a->B,a->lvec,zz,zz);CHKERRQ(ierr); 13543a40ed3dSBarry Smith PetscFunctionReturn(0); 1355cee3aa6bSSatish Balay } 1356cee3aa6bSSatish Balay 13574a2ae208SSatish Balay #undef __FUNCT__ 13584a2ae208SSatish Balay #define __FUNCT__ "MatMultTranspose_MPIBAIJ" 1359dfbe8321SBarry Smith PetscErrorCode MatMultTranspose_MPIBAIJ(Mat A,Vec xx,Vec yy) 1360cee3aa6bSSatish Balay { 1361cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1362dfbe8321SBarry Smith PetscErrorCode ierr; 1363ace3abfcSBarry Smith PetscBool merged; 1364cee3aa6bSSatish Balay 1365d64ed03dSBarry Smith PetscFunctionBegin; 1366a5ff213dSBarry Smith ierr = VecScatterGetMerged(a->Mvctx,&merged);CHKERRQ(ierr); 1367cee3aa6bSSatish Balay /* do nondiagonal part */ 13687c922b88SBarry Smith ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr); 1369a5ff213dSBarry Smith if (!merged) { 1370cee3aa6bSSatish Balay /* send it on its way */ 1371ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 1372cee3aa6bSSatish Balay /* do local part */ 13737c922b88SBarry Smith ierr = (*a->A->ops->multtranspose)(a->A,xx,yy);CHKERRQ(ierr); 1374cee3aa6bSSatish Balay /* receive remote parts: note this assumes the values are not actually */ 1375a5ff213dSBarry Smith /* inserted in yy until the next line */ 1376ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 1377a5ff213dSBarry Smith } else { 1378a5ff213dSBarry Smith /* do local part */ 1379a5ff213dSBarry Smith ierr = (*a->A->ops->multtranspose)(a->A,xx,yy);CHKERRQ(ierr); 1380a5ff213dSBarry Smith /* send it on its way */ 1381ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 1382a5ff213dSBarry Smith /* values actually were received in the Begin() but we need to call this nop */ 1383ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 1384a5ff213dSBarry Smith } 13853a40ed3dSBarry Smith PetscFunctionReturn(0); 1386cee3aa6bSSatish Balay } 1387cee3aa6bSSatish Balay 13884a2ae208SSatish Balay #undef __FUNCT__ 13894a2ae208SSatish Balay #define __FUNCT__ "MatMultTransposeAdd_MPIBAIJ" 1390dfbe8321SBarry Smith PetscErrorCode MatMultTransposeAdd_MPIBAIJ(Mat A,Vec xx,Vec yy,Vec zz) 1391cee3aa6bSSatish Balay { 1392cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1393dfbe8321SBarry Smith PetscErrorCode ierr; 1394cee3aa6bSSatish Balay 1395d64ed03dSBarry Smith PetscFunctionBegin; 1396cee3aa6bSSatish Balay /* do nondiagonal part */ 13977c922b88SBarry Smith ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr); 1398cee3aa6bSSatish Balay /* send it on its way */ 1399ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 1400cee3aa6bSSatish Balay /* do local part */ 14017c922b88SBarry Smith ierr = (*a->A->ops->multtransposeadd)(a->A,xx,yy,zz);CHKERRQ(ierr); 1402cee3aa6bSSatish Balay /* receive remote parts: note this assumes the values are not actually */ 1403cee3aa6bSSatish Balay /* inserted in yy until the next line, which is true for my implementation*/ 1404cee3aa6bSSatish Balay /* but is not perhaps always true. */ 1405ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 14063a40ed3dSBarry Smith PetscFunctionReturn(0); 1407cee3aa6bSSatish Balay } 1408cee3aa6bSSatish Balay 1409cee3aa6bSSatish Balay /* 1410cee3aa6bSSatish Balay This only works correctly for square matrices where the subblock A->A is the 1411cee3aa6bSSatish Balay diagonal block 1412cee3aa6bSSatish Balay */ 14134a2ae208SSatish Balay #undef __FUNCT__ 14144a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonal_MPIBAIJ" 1415dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_MPIBAIJ(Mat A,Vec v) 1416cee3aa6bSSatish Balay { 1417cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1418dfbe8321SBarry Smith PetscErrorCode ierr; 1419d64ed03dSBarry Smith 1420d64ed03dSBarry Smith PetscFunctionBegin; 1421e32f2f54SBarry Smith if (A->rmap->N != A->cmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block"); 14223a40ed3dSBarry Smith ierr = MatGetDiagonal(a->A,v);CHKERRQ(ierr); 14233a40ed3dSBarry Smith PetscFunctionReturn(0); 1424cee3aa6bSSatish Balay } 1425cee3aa6bSSatish Balay 14264a2ae208SSatish Balay #undef __FUNCT__ 14274a2ae208SSatish Balay #define __FUNCT__ "MatScale_MPIBAIJ" 1428f4df32b1SMatthew Knepley PetscErrorCode MatScale_MPIBAIJ(Mat A,PetscScalar aa) 1429cee3aa6bSSatish Balay { 1430cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1431dfbe8321SBarry Smith PetscErrorCode ierr; 1432d64ed03dSBarry Smith 1433d64ed03dSBarry Smith PetscFunctionBegin; 1434f4df32b1SMatthew Knepley ierr = MatScale(a->A,aa);CHKERRQ(ierr); 1435f4df32b1SMatthew Knepley ierr = MatScale(a->B,aa);CHKERRQ(ierr); 14363a40ed3dSBarry Smith PetscFunctionReturn(0); 1437cee3aa6bSSatish Balay } 1438026e39d0SSatish Balay 14394a2ae208SSatish Balay #undef __FUNCT__ 14404a2ae208SSatish Balay #define __FUNCT__ "MatGetRow_MPIBAIJ" 1441b24ad042SBarry Smith PetscErrorCode MatGetRow_MPIBAIJ(Mat matin,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 1442acdf5bf4SSatish Balay { 1443acdf5bf4SSatish Balay Mat_MPIBAIJ *mat = (Mat_MPIBAIJ*)matin->data; 144487828ca2SBarry Smith PetscScalar *vworkA,*vworkB,**pvA,**pvB,*v_p; 14456849ba73SBarry Smith PetscErrorCode ierr; 1446d0f46423SBarry Smith PetscInt bs = matin->rmap->bs,bs2 = mat->bs2,i,*cworkA,*cworkB,**pcA,**pcB; 1447d0f46423SBarry Smith PetscInt nztot,nzA,nzB,lrow,brstart = matin->rmap->rstart,brend = matin->rmap->rend; 1448899cda47SBarry Smith PetscInt *cmap,*idx_p,cstart = mat->cstartbs; 1449acdf5bf4SSatish Balay 1450d64ed03dSBarry Smith PetscFunctionBegin; 1451e7e72b3dSBarry Smith if (row < brstart || row >= brend) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local rows"); 1452e32f2f54SBarry Smith if (mat->getrowactive) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Already active"); 1453acdf5bf4SSatish Balay mat->getrowactive = PETSC_TRUE; 1454acdf5bf4SSatish Balay 1455acdf5bf4SSatish Balay if (!mat->rowvalues && (idx || v)) { 1456acdf5bf4SSatish Balay /* 1457acdf5bf4SSatish Balay allocate enough space to hold information from the longest row. 1458acdf5bf4SSatish Balay */ 1459acdf5bf4SSatish Balay Mat_SeqBAIJ *Aa = (Mat_SeqBAIJ*)mat->A->data,*Ba = (Mat_SeqBAIJ*)mat->B->data; 1460b24ad042SBarry Smith PetscInt max = 1,mbs = mat->mbs,tmp; 1461bd16c2feSSatish Balay for (i=0; i<mbs; i++) { 1462acdf5bf4SSatish Balay tmp = Aa->i[i+1] - Aa->i[i] + Ba->i[i+1] - Ba->i[i]; 1463acdf5bf4SSatish Balay if (max < tmp) { max = tmp; } 1464acdf5bf4SSatish Balay } 1465fca92195SBarry Smith ierr = PetscMalloc2(max*bs2,PetscScalar,&mat->rowvalues,max*bs2,PetscInt,&mat->rowindices);CHKERRQ(ierr); 1466acdf5bf4SSatish Balay } 1467d9d09a02SSatish Balay lrow = row - brstart; 1468acdf5bf4SSatish Balay 1469acdf5bf4SSatish Balay pvA = &vworkA; pcA = &cworkA; pvB = &vworkB; pcB = &cworkB; 1470acdf5bf4SSatish Balay if (!v) {pvA = 0; pvB = 0;} 1471acdf5bf4SSatish Balay if (!idx) {pcA = 0; if (!v) pcB = 0;} 1472f830108cSBarry Smith ierr = (*mat->A->ops->getrow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr); 1473f830108cSBarry Smith ierr = (*mat->B->ops->getrow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr); 1474acdf5bf4SSatish Balay nztot = nzA + nzB; 1475acdf5bf4SSatish Balay 1476acdf5bf4SSatish Balay cmap = mat->garray; 1477acdf5bf4SSatish Balay if (v || idx) { 1478acdf5bf4SSatish Balay if (nztot) { 1479acdf5bf4SSatish Balay /* Sort by increasing column numbers, assuming A and B already sorted */ 1480b24ad042SBarry Smith PetscInt imark = -1; 1481acdf5bf4SSatish Balay if (v) { 1482acdf5bf4SSatish Balay *v = v_p = mat->rowvalues; 1483acdf5bf4SSatish Balay for (i=0; i<nzB; i++) { 1484d9d09a02SSatish Balay if (cmap[cworkB[i]/bs] < cstart) v_p[i] = vworkB[i]; 1485acdf5bf4SSatish Balay else break; 1486acdf5bf4SSatish Balay } 1487acdf5bf4SSatish Balay imark = i; 1488acdf5bf4SSatish Balay for (i=0; i<nzA; i++) v_p[imark+i] = vworkA[i]; 1489acdf5bf4SSatish Balay for (i=imark; i<nzB; i++) v_p[nzA+i] = vworkB[i]; 1490acdf5bf4SSatish Balay } 1491acdf5bf4SSatish Balay if (idx) { 1492acdf5bf4SSatish Balay *idx = idx_p = mat->rowindices; 1493acdf5bf4SSatish Balay if (imark > -1) { 1494acdf5bf4SSatish Balay for (i=0; i<imark; i++) { 1495bd16c2feSSatish Balay idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs; 1496acdf5bf4SSatish Balay } 1497acdf5bf4SSatish Balay } else { 1498acdf5bf4SSatish Balay for (i=0; i<nzB; i++) { 1499d9d09a02SSatish Balay if (cmap[cworkB[i]/bs] < cstart) 1500d9d09a02SSatish Balay idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ; 1501acdf5bf4SSatish Balay else break; 1502acdf5bf4SSatish Balay } 1503acdf5bf4SSatish Balay imark = i; 1504acdf5bf4SSatish Balay } 1505d9d09a02SSatish Balay for (i=0; i<nzA; i++) idx_p[imark+i] = cstart*bs + cworkA[i]; 1506d9d09a02SSatish Balay for (i=imark; i<nzB; i++) idx_p[nzA+i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ; 1507acdf5bf4SSatish Balay } 1508d64ed03dSBarry Smith } else { 1509d212a18eSSatish Balay if (idx) *idx = 0; 1510d212a18eSSatish Balay if (v) *v = 0; 1511d212a18eSSatish Balay } 1512acdf5bf4SSatish Balay } 1513acdf5bf4SSatish Balay *nz = nztot; 1514f830108cSBarry Smith ierr = (*mat->A->ops->restorerow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr); 1515f830108cSBarry Smith ierr = (*mat->B->ops->restorerow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr); 15163a40ed3dSBarry Smith PetscFunctionReturn(0); 1517acdf5bf4SSatish Balay } 1518acdf5bf4SSatish Balay 15194a2ae208SSatish Balay #undef __FUNCT__ 15204a2ae208SSatish Balay #define __FUNCT__ "MatRestoreRow_MPIBAIJ" 1521b24ad042SBarry Smith PetscErrorCode MatRestoreRow_MPIBAIJ(Mat mat,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 1522acdf5bf4SSatish Balay { 1523acdf5bf4SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 1524d64ed03dSBarry Smith 1525d64ed03dSBarry Smith PetscFunctionBegin; 1526e7e72b3dSBarry Smith if (!baij->getrowactive) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"MatGetRow not called"); 1527acdf5bf4SSatish Balay baij->getrowactive = PETSC_FALSE; 15283a40ed3dSBarry Smith PetscFunctionReturn(0); 1529acdf5bf4SSatish Balay } 1530acdf5bf4SSatish Balay 15314a2ae208SSatish Balay #undef __FUNCT__ 15324a2ae208SSatish Balay #define __FUNCT__ "MatZeroEntries_MPIBAIJ" 1533dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_MPIBAIJ(Mat A) 153458667388SSatish Balay { 153558667388SSatish Balay Mat_MPIBAIJ *l = (Mat_MPIBAIJ*)A->data; 1536dfbe8321SBarry Smith PetscErrorCode ierr; 1537d64ed03dSBarry Smith 1538d64ed03dSBarry Smith PetscFunctionBegin; 153958667388SSatish Balay ierr = MatZeroEntries(l->A);CHKERRQ(ierr); 154058667388SSatish Balay ierr = MatZeroEntries(l->B);CHKERRQ(ierr); 15413a40ed3dSBarry Smith PetscFunctionReturn(0); 154258667388SSatish Balay } 15430ac07820SSatish Balay 15444a2ae208SSatish Balay #undef __FUNCT__ 15454a2ae208SSatish Balay #define __FUNCT__ "MatGetInfo_MPIBAIJ" 1546dfbe8321SBarry Smith PetscErrorCode MatGetInfo_MPIBAIJ(Mat matin,MatInfoType flag,MatInfo *info) 15470ac07820SSatish Balay { 15484e220ebcSLois Curfman McInnes Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)matin->data; 15494e220ebcSLois Curfman McInnes Mat A = a->A,B = a->B; 1550dfbe8321SBarry Smith PetscErrorCode ierr; 1551329f5518SBarry Smith PetscReal isend[5],irecv[5]; 15520ac07820SSatish Balay 1553d64ed03dSBarry Smith PetscFunctionBegin; 1554d0f46423SBarry Smith info->block_size = (PetscReal)matin->rmap->bs; 15554e220ebcSLois Curfman McInnes ierr = MatGetInfo(A,MAT_LOCAL,info);CHKERRQ(ierr); 15560e4b21beSBarry Smith isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded; 1557de87f314SBarry Smith isend[3] = info->memory; isend[4] = info->mallocs; 15584e220ebcSLois Curfman McInnes ierr = MatGetInfo(B,MAT_LOCAL,info);CHKERRQ(ierr); 15590e4b21beSBarry Smith isend[0] += info->nz_used; isend[1] += info->nz_allocated; isend[2] += info->nz_unneeded; 1560de87f314SBarry Smith isend[3] += info->memory; isend[4] += info->mallocs; 15610ac07820SSatish Balay if (flag == MAT_LOCAL) { 15624e220ebcSLois Curfman McInnes info->nz_used = isend[0]; 15634e220ebcSLois Curfman McInnes info->nz_allocated = isend[1]; 15644e220ebcSLois Curfman McInnes info->nz_unneeded = isend[2]; 15654e220ebcSLois Curfman McInnes info->memory = isend[3]; 15664e220ebcSLois Curfman McInnes info->mallocs = isend[4]; 15670ac07820SSatish Balay } else if (flag == MAT_GLOBAL_MAX) { 1568d9822059SBarry Smith ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPIU_MAX,((PetscObject)matin)->comm);CHKERRQ(ierr); 15694e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 15704e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 15714e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 15724e220ebcSLois Curfman McInnes info->memory = irecv[3]; 15734e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 15740ac07820SSatish Balay } else if (flag == MAT_GLOBAL_SUM) { 1575d9822059SBarry Smith ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPIU_SUM,((PetscObject)matin)->comm);CHKERRQ(ierr); 15764e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 15774e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 15784e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 15794e220ebcSLois Curfman McInnes info->memory = irecv[3]; 15804e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 1581d41123aaSBarry Smith } else { 158265e19b50SBarry Smith SETERRQ1(((PetscObject)matin)->comm,PETSC_ERR_ARG_WRONG,"Unknown MatInfoType argument %d",(int)flag); 15830ac07820SSatish Balay } 15844e220ebcSLois Curfman McInnes info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */ 15854e220ebcSLois Curfman McInnes info->fill_ratio_needed = 0; 15864e220ebcSLois Curfman McInnes info->factor_mallocs = 0; 15873a40ed3dSBarry Smith PetscFunctionReturn(0); 15880ac07820SSatish Balay } 15890ac07820SSatish Balay 15904a2ae208SSatish Balay #undef __FUNCT__ 15914a2ae208SSatish Balay #define __FUNCT__ "MatSetOption_MPIBAIJ" 1592ace3abfcSBarry Smith PetscErrorCode MatSetOption_MPIBAIJ(Mat A,MatOption op,PetscBool flg) 159358667388SSatish Balay { 159458667388SSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1595dfbe8321SBarry Smith PetscErrorCode ierr; 159658667388SSatish Balay 1597d64ed03dSBarry Smith PetscFunctionBegin; 159812c028f9SKris Buschelman switch (op) { 1599512a5fc5SBarry Smith case MAT_NEW_NONZERO_LOCATIONS: 160012c028f9SKris Buschelman case MAT_NEW_NONZERO_ALLOCATION_ERR: 160128b2fa4aSMatthew Knepley case MAT_UNUSED_NONZERO_LOCATION_ERR: 1602a9817697SBarry Smith case MAT_KEEP_NONZERO_PATTERN: 160312c028f9SKris Buschelman case MAT_NEW_NONZERO_LOCATION_ERR: 16044e0d8c25SBarry Smith ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 16054e0d8c25SBarry Smith ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr); 160612c028f9SKris Buschelman break; 160712c028f9SKris Buschelman case MAT_ROW_ORIENTED: 16084e0d8c25SBarry Smith a->roworiented = flg; 16094e0d8c25SBarry Smith ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 16104e0d8c25SBarry Smith ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr); 161112c028f9SKris Buschelman break; 16124e0d8c25SBarry Smith case MAT_NEW_DIAGONALS: 1613290bbb0aSBarry Smith ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr); 161412c028f9SKris Buschelman break; 161512c028f9SKris Buschelman case MAT_IGNORE_OFF_PROC_ENTRIES: 16164e0d8c25SBarry Smith a->donotstash = flg; 161712c028f9SKris Buschelman break; 161812c028f9SKris Buschelman case MAT_USE_HASH_TABLE: 16194e0d8c25SBarry Smith a->ht_flag = flg; 162012c028f9SKris Buschelman break; 162177e54ba9SKris Buschelman case MAT_SYMMETRIC: 162277e54ba9SKris Buschelman case MAT_STRUCTURALLY_SYMMETRIC: 16232188ac68SBarry Smith case MAT_HERMITIAN: 16242188ac68SBarry Smith case MAT_SYMMETRY_ETERNAL: 16254e0d8c25SBarry Smith ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 162677e54ba9SKris Buschelman break; 162712c028f9SKris Buschelman default: 162865e19b50SBarry Smith SETERRQ1(((PetscObject)A)->comm,PETSC_ERR_SUP,"unknown option %d",op); 1629d64ed03dSBarry Smith } 16303a40ed3dSBarry Smith PetscFunctionReturn(0); 163158667388SSatish Balay } 163258667388SSatish Balay 16334a2ae208SSatish Balay #undef __FUNCT__ 16346a719282SBarry Smith #define __FUNCT__ "MatTranspose_MPIBAIJ" 1635fc4dec0aSBarry Smith PetscErrorCode MatTranspose_MPIBAIJ(Mat A,MatReuse reuse,Mat *matout) 16360ac07820SSatish Balay { 16370ac07820SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)A->data; 16380ac07820SSatish Balay Mat_SeqBAIJ *Aloc; 16390ac07820SSatish Balay Mat B; 1640dfbe8321SBarry Smith PetscErrorCode ierr; 1641d0f46423SBarry Smith PetscInt M=A->rmap->N,N=A->cmap->N,*ai,*aj,i,*rvals,j,k,col; 1642d0f46423SBarry Smith PetscInt bs=A->rmap->bs,mbs=baij->mbs; 16433eda8832SBarry Smith MatScalar *a; 16440ac07820SSatish Balay 1645d64ed03dSBarry Smith PetscFunctionBegin; 1646e7e72b3dSBarry Smith if (reuse == MAT_REUSE_MATRIX && A == *matout && M != N) SETERRQ(((PetscObject)A)->comm,PETSC_ERR_ARG_SIZ,"Square matrix only for in-place"); 1647fc4dec0aSBarry Smith if (reuse == MAT_INITIAL_MATRIX || *matout == A) { 16487adad957SLisandro Dalcin ierr = MatCreate(((PetscObject)A)->comm,&B);CHKERRQ(ierr); 1649d0f46423SBarry Smith ierr = MatSetSizes(B,A->cmap->n,A->rmap->n,N,M);CHKERRQ(ierr); 16507adad957SLisandro Dalcin ierr = MatSetType(B,((PetscObject)A)->type_name);CHKERRQ(ierr); 16512e72b8d9SBarry Smith /* Do not know preallocation information, but must set block size */ 16522e72b8d9SBarry Smith ierr = MatMPIBAIJSetPreallocation(B,A->rmap->bs,PETSC_DECIDE,PETSC_NULL,PETSC_DECIDE,PETSC_NULL);CHKERRQ(ierr); 1653fc4dec0aSBarry Smith } else { 1654fc4dec0aSBarry Smith B = *matout; 1655fc4dec0aSBarry Smith } 16560ac07820SSatish Balay 16570ac07820SSatish Balay /* copy over the A part */ 16580ac07820SSatish Balay Aloc = (Mat_SeqBAIJ*)baij->A->data; 16590ac07820SSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 1660b24ad042SBarry Smith ierr = PetscMalloc(bs*sizeof(PetscInt),&rvals);CHKERRQ(ierr); 16610ac07820SSatish Balay 16620ac07820SSatish Balay for (i=0; i<mbs; i++) { 1663899cda47SBarry Smith rvals[0] = bs*(baij->rstartbs + i); 16640ac07820SSatish Balay for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; } 16650ac07820SSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 1666899cda47SBarry Smith col = (baij->cstartbs+aj[j])*bs; 16670ac07820SSatish Balay for (k=0; k<bs; k++) { 166897e5c40aSBarry Smith ierr = MatSetValues_MPIBAIJ(B,1,&col,bs,rvals,a,INSERT_VALUES);CHKERRQ(ierr); 16690ac07820SSatish Balay col++; a += bs; 16700ac07820SSatish Balay } 16710ac07820SSatish Balay } 16720ac07820SSatish Balay } 16730ac07820SSatish Balay /* copy over the B part */ 16740ac07820SSatish Balay Aloc = (Mat_SeqBAIJ*)baij->B->data; 16750ac07820SSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 16760ac07820SSatish Balay for (i=0; i<mbs; i++) { 1677899cda47SBarry Smith rvals[0] = bs*(baij->rstartbs + i); 16780ac07820SSatish Balay for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; } 16790ac07820SSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 16800ac07820SSatish Balay col = baij->garray[aj[j]]*bs; 16810ac07820SSatish Balay for (k=0; k<bs; k++) { 168297e5c40aSBarry Smith ierr = MatSetValues_MPIBAIJ(B,1,&col,bs,rvals,a,INSERT_VALUES);CHKERRQ(ierr); 16830ac07820SSatish Balay col++; a += bs; 16840ac07820SSatish Balay } 16850ac07820SSatish Balay } 16860ac07820SSatish Balay } 1687606d414cSSatish Balay ierr = PetscFree(rvals);CHKERRQ(ierr); 16880ac07820SSatish Balay ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 16890ac07820SSatish Balay ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 16900ac07820SSatish Balay 1691815cbec1SBarry Smith if (reuse == MAT_INITIAL_MATRIX || *matout != A) { 16920ac07820SSatish Balay *matout = B; 16930ac07820SSatish Balay } else { 1694eb6b5d47SBarry Smith ierr = MatHeaderMerge(A,B);CHKERRQ(ierr); 16950ac07820SSatish Balay } 16963a40ed3dSBarry Smith PetscFunctionReturn(0); 16970ac07820SSatish Balay } 16980e95ebc0SSatish Balay 16994a2ae208SSatish Balay #undef __FUNCT__ 17004a2ae208SSatish Balay #define __FUNCT__ "MatDiagonalScale_MPIBAIJ" 1701dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_MPIBAIJ(Mat mat,Vec ll,Vec rr) 17020e95ebc0SSatish Balay { 170336c4a09eSSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 170436c4a09eSSatish Balay Mat a = baij->A,b = baij->B; 1705dfbe8321SBarry Smith PetscErrorCode ierr; 1706b24ad042SBarry Smith PetscInt s1,s2,s3; 17070e95ebc0SSatish Balay 1708d64ed03dSBarry Smith PetscFunctionBegin; 170936c4a09eSSatish Balay ierr = MatGetLocalSize(mat,&s2,&s3);CHKERRQ(ierr); 171036c4a09eSSatish Balay if (rr) { 171136c4a09eSSatish Balay ierr = VecGetLocalSize(rr,&s1);CHKERRQ(ierr); 1712e32f2f54SBarry Smith if (s1!=s3) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"right vector non-conforming local size"); 171336c4a09eSSatish Balay /* Overlap communication with computation. */ 1714ca9f406cSSatish Balay ierr = VecScatterBegin(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 171536c4a09eSSatish Balay } 17160e95ebc0SSatish Balay if (ll) { 17170e95ebc0SSatish Balay ierr = VecGetLocalSize(ll,&s1);CHKERRQ(ierr); 1718e32f2f54SBarry Smith if (s1!=s2) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"left vector non-conforming local size"); 1719a21fb8cbSBarry Smith ierr = (*b->ops->diagonalscale)(b,ll,PETSC_NULL);CHKERRQ(ierr); 17200e95ebc0SSatish Balay } 172136c4a09eSSatish Balay /* scale the diagonal block */ 172236c4a09eSSatish Balay ierr = (*a->ops->diagonalscale)(a,ll,rr);CHKERRQ(ierr); 172336c4a09eSSatish Balay 172436c4a09eSSatish Balay if (rr) { 172536c4a09eSSatish Balay /* Do a scatter end and then right scale the off-diagonal block */ 1726ca9f406cSSatish Balay ierr = VecScatterEnd(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1727a21fb8cbSBarry Smith ierr = (*b->ops->diagonalscale)(b,PETSC_NULL,baij->lvec);CHKERRQ(ierr); 172836c4a09eSSatish Balay } 172936c4a09eSSatish Balay 17303a40ed3dSBarry Smith PetscFunctionReturn(0); 17310e95ebc0SSatish Balay } 17320e95ebc0SSatish Balay 17334a2ae208SSatish Balay #undef __FUNCT__ 17344a2ae208SSatish Balay #define __FUNCT__ "MatZeroRows_MPIBAIJ" 17352b40b63fSBarry Smith PetscErrorCode MatZeroRows_MPIBAIJ(Mat A,PetscInt N,const PetscInt rows[],PetscScalar diag,Vec x,Vec b) 17360ac07820SSatish Balay { 17370ac07820SSatish Balay Mat_MPIBAIJ *l = (Mat_MPIBAIJ*)A->data; 17386849ba73SBarry Smith PetscErrorCode ierr; 1739b24ad042SBarry Smith PetscMPIInt imdex,size = l->size,n,rank = l->rank; 1740d0f46423SBarry Smith PetscInt i,*owners = A->rmap->range; 1741b24ad042SBarry Smith PetscInt *nprocs,j,idx,nsends,row; 1742b24ad042SBarry Smith PetscInt nmax,*svalues,*starts,*owner,nrecvs; 17437adad957SLisandro Dalcin PetscInt *rvalues,tag = ((PetscObject)A)->tag,count,base,slen,*source,lastidx = -1; 1744d0f46423SBarry Smith PetscInt *lens,*lrows,*values,rstart_bs=A->rmap->rstart; 17457adad957SLisandro Dalcin MPI_Comm comm = ((PetscObject)A)->comm; 17460ac07820SSatish Balay MPI_Request *send_waits,*recv_waits; 17470ac07820SSatish Balay MPI_Status recv_status,*send_status; 174897b48c8fSBarry Smith const PetscScalar *xx; 174997b48c8fSBarry Smith PetscScalar *bb; 17506543fbbaSBarry Smith #if defined(PETSC_DEBUG) 1751ace3abfcSBarry Smith PetscBool found = PETSC_FALSE; 17526543fbbaSBarry Smith #endif 17530ac07820SSatish Balay 1754d64ed03dSBarry Smith PetscFunctionBegin; 17550ac07820SSatish Balay /* first count number of contributors to each processor */ 1756b24ad042SBarry Smith ierr = PetscMalloc(2*size*sizeof(PetscInt),&nprocs);CHKERRQ(ierr); 1757b24ad042SBarry Smith ierr = PetscMemzero(nprocs,2*size*sizeof(PetscInt));CHKERRQ(ierr); 1758b24ad042SBarry Smith ierr = PetscMalloc((N+1)*sizeof(PetscInt),&owner);CHKERRQ(ierr); /* see note*/ 17596543fbbaSBarry Smith j = 0; 17600ac07820SSatish Balay for (i=0; i<N; i++) { 17616543fbbaSBarry Smith if (lastidx > (idx = rows[i])) j = 0; 17626543fbbaSBarry Smith lastidx = idx; 17636543fbbaSBarry Smith for (; j<size; j++) { 1764357c27ecSBarry Smith if (idx >= owners[j] && idx < owners[j+1]) { 17656543fbbaSBarry Smith nprocs[2*j]++; 17666543fbbaSBarry Smith nprocs[2*j+1] = 1; 17676543fbbaSBarry Smith owner[i] = j; 17686543fbbaSBarry Smith #if defined(PETSC_DEBUG) 17696543fbbaSBarry Smith found = PETSC_TRUE; 17706543fbbaSBarry Smith #endif 17716543fbbaSBarry Smith break; 17720ac07820SSatish Balay } 17730ac07820SSatish Balay } 17746543fbbaSBarry Smith #if defined(PETSC_DEBUG) 1775e32f2f54SBarry Smith if (!found) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Index out of range"); 17766543fbbaSBarry Smith found = PETSC_FALSE; 17776543fbbaSBarry Smith #endif 17780ac07820SSatish Balay } 1779c1dc657dSBarry Smith nsends = 0; for (i=0; i<size; i++) { nsends += nprocs[2*i+1];} 17800ac07820SSatish Balay 17817367270fSBarry Smith if (A->nooffproczerorows) { 17827367270fSBarry Smith if (nsends > 1) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"You called MatSetOption(,MAT_NO_OFF_PROC_ZERO_ROWS,PETSC_TRUE) but set an off process zero row"); 17837367270fSBarry Smith nrecvs = nsends; 17847367270fSBarry Smith nmax = N; 17857367270fSBarry Smith } else { 17860ac07820SSatish Balay /* inform other processors of number of messages and max length*/ 1787c1dc657dSBarry Smith ierr = PetscMaxSum(comm,nprocs,&nmax,&nrecvs);CHKERRQ(ierr); 17887367270fSBarry Smith } 17890ac07820SSatish Balay 17900ac07820SSatish Balay /* post receives: */ 1791b24ad042SBarry Smith ierr = PetscMalloc((nrecvs+1)*(nmax+1)*sizeof(PetscInt),&rvalues);CHKERRQ(ierr); 1792b0a32e0cSBarry Smith ierr = PetscMalloc((nrecvs+1)*sizeof(MPI_Request),&recv_waits);CHKERRQ(ierr); 17930ac07820SSatish Balay for (i=0; i<nrecvs; i++) { 1794b24ad042SBarry Smith ierr = MPI_Irecv(rvalues+nmax*i,nmax,MPIU_INT,MPI_ANY_SOURCE,tag,comm,recv_waits+i);CHKERRQ(ierr); 17950ac07820SSatish Balay } 17960ac07820SSatish Balay 17970ac07820SSatish Balay /* do sends: 17980ac07820SSatish Balay 1) starts[i] gives the starting index in svalues for stuff going to 17990ac07820SSatish Balay the ith processor 18000ac07820SSatish Balay */ 1801b24ad042SBarry Smith ierr = PetscMalloc((N+1)*sizeof(PetscInt),&svalues);CHKERRQ(ierr); 1802b0a32e0cSBarry Smith ierr = PetscMalloc((nsends+1)*sizeof(MPI_Request),&send_waits);CHKERRQ(ierr); 1803b24ad042SBarry Smith ierr = PetscMalloc((size+1)*sizeof(PetscInt),&starts);CHKERRQ(ierr); 18040ac07820SSatish Balay starts[0] = 0; 1805c1dc657dSBarry Smith for (i=1; i<size; i++) { starts[i] = starts[i-1] + nprocs[2*i-2];} 18060ac07820SSatish Balay for (i=0; i<N; i++) { 18070ac07820SSatish Balay svalues[starts[owner[i]]++] = rows[i]; 18080ac07820SSatish Balay } 18090ac07820SSatish Balay 18100ac07820SSatish Balay starts[0] = 0; 1811c1dc657dSBarry Smith for (i=1; i<size+1; i++) { starts[i] = starts[i-1] + nprocs[2*i-2];} 18120ac07820SSatish Balay count = 0; 18130ac07820SSatish Balay for (i=0; i<size; i++) { 1814c1dc657dSBarry Smith if (nprocs[2*i+1]) { 1815b24ad042SBarry Smith ierr = MPI_Isend(svalues+starts[i],nprocs[2*i],MPIU_INT,i,tag,comm,send_waits+count++);CHKERRQ(ierr); 18160ac07820SSatish Balay } 18170ac07820SSatish Balay } 1818606d414cSSatish Balay ierr = PetscFree(starts);CHKERRQ(ierr); 18190ac07820SSatish Balay 1820357c27ecSBarry Smith base = owners[rank]; 18210ac07820SSatish Balay 18220ac07820SSatish Balay /* wait on receives */ 1823fca92195SBarry Smith ierr = PetscMalloc2(nrecvs+1,PetscInt,&lens,nrecvs+1,PetscInt,&source);CHKERRQ(ierr); 1824fca92195SBarry Smith count = nrecvs; 1825fca92195SBarry Smith slen = 0; 18260ac07820SSatish Balay while (count) { 1827ca161407SBarry Smith ierr = MPI_Waitany(nrecvs,recv_waits,&imdex,&recv_status);CHKERRQ(ierr); 18280ac07820SSatish Balay /* unpack receives into our local space */ 1829b24ad042SBarry Smith ierr = MPI_Get_count(&recv_status,MPIU_INT,&n);CHKERRQ(ierr); 18300ac07820SSatish Balay source[imdex] = recv_status.MPI_SOURCE; 18310ac07820SSatish Balay lens[imdex] = n; 18320ac07820SSatish Balay slen += n; 18330ac07820SSatish Balay count--; 18340ac07820SSatish Balay } 1835606d414cSSatish Balay ierr = PetscFree(recv_waits);CHKERRQ(ierr); 18360ac07820SSatish Balay 18370ac07820SSatish Balay /* move the data into the send scatter */ 1838b24ad042SBarry Smith ierr = PetscMalloc((slen+1)*sizeof(PetscInt),&lrows);CHKERRQ(ierr); 18390ac07820SSatish Balay count = 0; 18400ac07820SSatish Balay for (i=0; i<nrecvs; i++) { 18410ac07820SSatish Balay values = rvalues + i*nmax; 18420ac07820SSatish Balay for (j=0; j<lens[i]; j++) { 18430ac07820SSatish Balay lrows[count++] = values[j] - base; 18440ac07820SSatish Balay } 18450ac07820SSatish Balay } 1846606d414cSSatish Balay ierr = PetscFree(rvalues);CHKERRQ(ierr); 1847fca92195SBarry Smith ierr = PetscFree2(lens,source);CHKERRQ(ierr); 1848606d414cSSatish Balay ierr = PetscFree(owner);CHKERRQ(ierr); 1849606d414cSSatish Balay ierr = PetscFree(nprocs);CHKERRQ(ierr); 18500ac07820SSatish Balay 185197b48c8fSBarry Smith /* fix right hand side if needed */ 185297b48c8fSBarry Smith if (x && b) { 185397b48c8fSBarry Smith ierr = VecGetArrayRead(x,&xx);CHKERRQ(ierr); 185497b48c8fSBarry Smith ierr = VecGetArray(b,&bb);CHKERRQ(ierr); 185597b48c8fSBarry Smith for (i=0; i<slen; i++) { 185697b48c8fSBarry Smith bb[lrows[i]] = diag*xx[lrows[i]]; 185797b48c8fSBarry Smith } 185897b48c8fSBarry Smith ierr = VecRestoreArrayRead(x,&xx);CHKERRQ(ierr); 185997b48c8fSBarry Smith ierr = VecRestoreArray(b,&bb);CHKERRQ(ierr); 186097b48c8fSBarry Smith } 186197b48c8fSBarry Smith 18620ac07820SSatish Balay /* actually zap the local rows */ 186372dacd9aSBarry Smith /* 186472dacd9aSBarry Smith Zero the required rows. If the "diagonal block" of the matrix 1865a8c7a070SBarry Smith is square and the user wishes to set the diagonal we use separate 186672dacd9aSBarry Smith code so that MatSetValues() is not called for each diagonal allocating 186772dacd9aSBarry Smith new memory, thus calling lots of mallocs and slowing things down. 186872dacd9aSBarry Smith 186972dacd9aSBarry Smith */ 18709c957beeSSatish Balay /* must zero l->B before l->A because the (diag) case below may put values into l->B*/ 18712b40b63fSBarry Smith ierr = MatZeroRows_SeqBAIJ(l->B,slen,lrows,0.0,0,0);CHKERRQ(ierr); 1872d0f46423SBarry Smith if ((diag != 0.0) && (l->A->rmap->N == l->A->cmap->N)) { 18732b40b63fSBarry Smith ierr = MatZeroRows_SeqBAIJ(l->A,slen,lrows,diag,0,0);CHKERRQ(ierr); 1874f4df32b1SMatthew Knepley } else if (diag != 0.0) { 18752b40b63fSBarry Smith ierr = MatZeroRows_SeqBAIJ(l->A,slen,lrows,0.0,0,0);CHKERRQ(ierr); 1876e7e72b3dSBarry Smith if (((Mat_SeqBAIJ*)l->A->data)->nonew) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"MatZeroRows() on rectangular matrices cannot be used with the Mat options \n\ 1877512a5fc5SBarry Smith MAT_NEW_NONZERO_LOCATIONS,MAT_NEW_NONZERO_LOCATION_ERR,MAT_NEW_NONZERO_ALLOCATION_ERR"); 1878a07cd24cSSatish Balay for (i=0; i<slen; i++) { 1879a07cd24cSSatish Balay row = lrows[i] + rstart_bs; 1880f4df32b1SMatthew Knepley ierr = MatSetValues(A,1,&row,1,&row,&diag,INSERT_VALUES);CHKERRQ(ierr); 1881a07cd24cSSatish Balay } 1882a07cd24cSSatish Balay ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 1883a07cd24cSSatish Balay ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 18849c957beeSSatish Balay } else { 18852b40b63fSBarry Smith ierr = MatZeroRows_SeqBAIJ(l->A,slen,lrows,0.0,0,0);CHKERRQ(ierr); 1886a07cd24cSSatish Balay } 18879c957beeSSatish Balay 1888606d414cSSatish Balay ierr = PetscFree(lrows);CHKERRQ(ierr); 1889a07cd24cSSatish Balay 18900ac07820SSatish Balay /* wait on sends */ 18910ac07820SSatish Balay if (nsends) { 189282502324SSatish Balay ierr = PetscMalloc(nsends*sizeof(MPI_Status),&send_status);CHKERRQ(ierr); 1893ca161407SBarry Smith ierr = MPI_Waitall(nsends,send_waits,send_status);CHKERRQ(ierr); 1894606d414cSSatish Balay ierr = PetscFree(send_status);CHKERRQ(ierr); 18950ac07820SSatish Balay } 1896606d414cSSatish Balay ierr = PetscFree(send_waits);CHKERRQ(ierr); 1897606d414cSSatish Balay ierr = PetscFree(svalues);CHKERRQ(ierr); 18980ac07820SSatish Balay 18993a40ed3dSBarry Smith PetscFunctionReturn(0); 19000ac07820SSatish Balay } 190172dacd9aSBarry Smith 19024a2ae208SSatish Balay #undef __FUNCT__ 19034a2ae208SSatish Balay #define __FUNCT__ "MatSetUnfactored_MPIBAIJ" 1904dfbe8321SBarry Smith PetscErrorCode MatSetUnfactored_MPIBAIJ(Mat A) 1905bb5a7306SBarry Smith { 1906bb5a7306SBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1907dfbe8321SBarry Smith PetscErrorCode ierr; 1908d64ed03dSBarry Smith 1909d64ed03dSBarry Smith PetscFunctionBegin; 1910bb5a7306SBarry Smith ierr = MatSetUnfactored(a->A);CHKERRQ(ierr); 19113a40ed3dSBarry Smith PetscFunctionReturn(0); 1912bb5a7306SBarry Smith } 1913bb5a7306SBarry Smith 19146849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIBAIJ(Mat,MatDuplicateOption,Mat *); 19150ac07820SSatish Balay 19164a2ae208SSatish Balay #undef __FUNCT__ 19174a2ae208SSatish Balay #define __FUNCT__ "MatEqual_MPIBAIJ" 1918ace3abfcSBarry Smith PetscErrorCode MatEqual_MPIBAIJ(Mat A,Mat B,PetscBool *flag) 19197fc3c18eSBarry Smith { 19207fc3c18eSBarry Smith Mat_MPIBAIJ *matB = (Mat_MPIBAIJ*)B->data,*matA = (Mat_MPIBAIJ*)A->data; 19217fc3c18eSBarry Smith Mat a,b,c,d; 1922ace3abfcSBarry Smith PetscBool flg; 1923dfbe8321SBarry Smith PetscErrorCode ierr; 19247fc3c18eSBarry Smith 19257fc3c18eSBarry Smith PetscFunctionBegin; 19267fc3c18eSBarry Smith a = matA->A; b = matA->B; 19277fc3c18eSBarry Smith c = matB->A; d = matB->B; 19287fc3c18eSBarry Smith 19297fc3c18eSBarry Smith ierr = MatEqual(a,c,&flg);CHKERRQ(ierr); 1930abc0a331SBarry Smith if (flg) { 19317fc3c18eSBarry Smith ierr = MatEqual(b,d,&flg);CHKERRQ(ierr); 19327fc3c18eSBarry Smith } 19337adad957SLisandro Dalcin ierr = MPI_Allreduce(&flg,flag,1,MPI_INT,MPI_LAND,((PetscObject)A)->comm);CHKERRQ(ierr); 19347fc3c18eSBarry Smith PetscFunctionReturn(0); 19357fc3c18eSBarry Smith } 19367fc3c18eSBarry Smith 19373c896bc6SHong Zhang #undef __FUNCT__ 19383c896bc6SHong Zhang #define __FUNCT__ "MatCopy_MPIBAIJ" 19393c896bc6SHong Zhang PetscErrorCode MatCopy_MPIBAIJ(Mat A,Mat B,MatStructure str) 19403c896bc6SHong Zhang { 19413c896bc6SHong Zhang PetscErrorCode ierr; 19423c896bc6SHong Zhang Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 19433c896bc6SHong Zhang Mat_MPIBAIJ *b = (Mat_MPIBAIJ *)B->data; 19443c896bc6SHong Zhang 19453c896bc6SHong Zhang PetscFunctionBegin; 19463c896bc6SHong Zhang /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */ 19473c896bc6SHong Zhang if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) { 19483c896bc6SHong Zhang ierr = MatCopy_Basic(A,B,str);CHKERRQ(ierr); 19493c896bc6SHong Zhang } else { 19503c896bc6SHong Zhang ierr = MatCopy(a->A,b->A,str);CHKERRQ(ierr); 19513c896bc6SHong Zhang ierr = MatCopy(a->B,b->B,str);CHKERRQ(ierr); 19523c896bc6SHong Zhang } 19533c896bc6SHong Zhang PetscFunctionReturn(0); 19543c896bc6SHong Zhang } 1955273d9f13SBarry Smith 19564a2ae208SSatish Balay #undef __FUNCT__ 1957*4994cf47SJed Brown #define __FUNCT__ "MatSetUp_MPIBAIJ" 1958*4994cf47SJed Brown PetscErrorCode MatSetUp_MPIBAIJ(Mat A) 1959273d9f13SBarry Smith { 1960dfbe8321SBarry Smith PetscErrorCode ierr; 1961273d9f13SBarry Smith 1962273d9f13SBarry Smith PetscFunctionBegin; 1963db4efbfdSBarry Smith ierr = MatMPIBAIJSetPreallocation(A,-PetscMax(A->rmap->bs,1),PETSC_DEFAULT,0,PETSC_DEFAULT,0);CHKERRQ(ierr); 1964273d9f13SBarry Smith PetscFunctionReturn(0); 1965273d9f13SBarry Smith } 1966273d9f13SBarry Smith 19674fe895cdSHong Zhang #undef __FUNCT__ 19684fe895cdSHong Zhang #define __FUNCT__ "MatAXPY_MPIBAIJ" 19694fe895cdSHong Zhang PetscErrorCode MatAXPY_MPIBAIJ(Mat Y,PetscScalar a,Mat X,MatStructure str) 19704fe895cdSHong Zhang { 19714fe895cdSHong Zhang PetscErrorCode ierr; 19724fe895cdSHong Zhang Mat_MPIBAIJ *xx=(Mat_MPIBAIJ *)X->data,*yy=(Mat_MPIBAIJ *)Y->data; 19734fe895cdSHong Zhang PetscBLASInt bnz,one=1; 19744fe895cdSHong Zhang Mat_SeqBAIJ *x,*y; 19754fe895cdSHong Zhang 19764fe895cdSHong Zhang PetscFunctionBegin; 19774fe895cdSHong Zhang if (str == SAME_NONZERO_PATTERN) { 19784fe895cdSHong Zhang PetscScalar alpha = a; 19794fe895cdSHong Zhang x = (Mat_SeqBAIJ *)xx->A->data; 19804fe895cdSHong Zhang y = (Mat_SeqBAIJ *)yy->A->data; 19810805154bSBarry Smith bnz = PetscBLASIntCast(x->nz); 19824fe895cdSHong Zhang BLASaxpy_(&bnz,&alpha,x->a,&one,y->a,&one); 19834fe895cdSHong Zhang x = (Mat_SeqBAIJ *)xx->B->data; 19844fe895cdSHong Zhang y = (Mat_SeqBAIJ *)yy->B->data; 19850805154bSBarry Smith bnz = PetscBLASIntCast(x->nz); 19864fe895cdSHong Zhang BLASaxpy_(&bnz,&alpha,x->a,&one,y->a,&one); 19874fe895cdSHong Zhang } else { 19884fe895cdSHong Zhang ierr = MatAXPY_Basic(Y,a,X,str);CHKERRQ(ierr); 19894fe895cdSHong Zhang } 19904fe895cdSHong Zhang PetscFunctionReturn(0); 19914fe895cdSHong Zhang } 19924fe895cdSHong Zhang 199399cafbc1SBarry Smith #undef __FUNCT__ 199441c166b1SJed Brown #define __FUNCT__ "MatSetBlockSize_MPIBAIJ" 199541c166b1SJed Brown PetscErrorCode MatSetBlockSize_MPIBAIJ(Mat A,PetscInt bs) 199641c166b1SJed Brown { 199741c166b1SJed Brown Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1998829b6ff0SJed Brown PetscInt rbs,cbs; 199941c166b1SJed Brown PetscErrorCode ierr; 200041c166b1SJed Brown 200141c166b1SJed Brown PetscFunctionBegin; 200241c166b1SJed Brown ierr = MatSetBlockSize(a->A,bs);CHKERRQ(ierr); 200341c166b1SJed Brown ierr = MatSetBlockSize(a->B,bs);CHKERRQ(ierr); 2004829b6ff0SJed Brown ierr = PetscLayoutGetBlockSize(A->rmap,&rbs);CHKERRQ(ierr); 2005829b6ff0SJed Brown ierr = PetscLayoutGetBlockSize(A->cmap,&cbs);CHKERRQ(ierr); 2006e32f2f54SBarry Smith if (rbs != bs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Attempt to set block size %d with BAIJ %d",bs,rbs); 2007e32f2f54SBarry Smith if (cbs != bs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Attempt to set block size %d with BAIJ %d",bs,cbs); 200841c166b1SJed Brown PetscFunctionReturn(0); 200941c166b1SJed Brown } 201041c166b1SJed Brown 201141c166b1SJed Brown #undef __FUNCT__ 201299cafbc1SBarry Smith #define __FUNCT__ "MatRealPart_MPIBAIJ" 201399cafbc1SBarry Smith PetscErrorCode MatRealPart_MPIBAIJ(Mat A) 201499cafbc1SBarry Smith { 201599cafbc1SBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 201699cafbc1SBarry Smith PetscErrorCode ierr; 201799cafbc1SBarry Smith 201899cafbc1SBarry Smith PetscFunctionBegin; 201999cafbc1SBarry Smith ierr = MatRealPart(a->A);CHKERRQ(ierr); 202099cafbc1SBarry Smith ierr = MatRealPart(a->B);CHKERRQ(ierr); 202199cafbc1SBarry Smith PetscFunctionReturn(0); 202299cafbc1SBarry Smith } 202399cafbc1SBarry Smith 202499cafbc1SBarry Smith #undef __FUNCT__ 202599cafbc1SBarry Smith #define __FUNCT__ "MatImaginaryPart_MPIBAIJ" 202699cafbc1SBarry Smith PetscErrorCode MatImaginaryPart_MPIBAIJ(Mat A) 202799cafbc1SBarry Smith { 202899cafbc1SBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 202999cafbc1SBarry Smith PetscErrorCode ierr; 203099cafbc1SBarry Smith 203199cafbc1SBarry Smith PetscFunctionBegin; 203299cafbc1SBarry Smith ierr = MatImaginaryPart(a->A);CHKERRQ(ierr); 203399cafbc1SBarry Smith ierr = MatImaginaryPart(a->B);CHKERRQ(ierr); 203499cafbc1SBarry Smith PetscFunctionReturn(0); 203599cafbc1SBarry Smith } 203699cafbc1SBarry Smith 203782094794SBarry Smith #undef __FUNCT__ 203882094794SBarry Smith #define __FUNCT__ "MatGetSubMatrix_MPIBAIJ" 20394aa3045dSJed Brown PetscErrorCode MatGetSubMatrix_MPIBAIJ(Mat mat,IS isrow,IS iscol,MatReuse call,Mat *newmat) 20404aa3045dSJed Brown { 20414aa3045dSJed Brown PetscErrorCode ierr; 20424aa3045dSJed Brown IS iscol_local; 20434aa3045dSJed Brown PetscInt csize; 20444aa3045dSJed Brown 20454aa3045dSJed Brown PetscFunctionBegin; 20464aa3045dSJed Brown ierr = ISGetLocalSize(iscol,&csize);CHKERRQ(ierr); 2047b79d0421SJed Brown if (call == MAT_REUSE_MATRIX) { 2048b79d0421SJed Brown ierr = PetscObjectQuery((PetscObject)*newmat,"ISAllGather",(PetscObject*)&iscol_local);CHKERRQ(ierr); 2049e32f2f54SBarry Smith if (!iscol_local) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Submatrix passed in was not used before, cannot reuse"); 2050b79d0421SJed Brown } else { 20514aa3045dSJed Brown ierr = ISAllGather(iscol,&iscol_local);CHKERRQ(ierr); 2052b79d0421SJed Brown } 20534aa3045dSJed Brown ierr = MatGetSubMatrix_MPIBAIJ_Private(mat,isrow,iscol_local,csize,call,newmat);CHKERRQ(ierr); 2054b79d0421SJed Brown if (call == MAT_INITIAL_MATRIX) { 2055b79d0421SJed Brown ierr = PetscObjectCompose((PetscObject)*newmat,"ISAllGather",(PetscObject)iscol_local);CHKERRQ(ierr); 20566bf464f9SBarry Smith ierr = ISDestroy(&iscol_local);CHKERRQ(ierr); 2057b79d0421SJed Brown } 20584aa3045dSJed Brown PetscFunctionReturn(0); 20594aa3045dSJed Brown } 20604aa3045dSJed Brown 20614aa3045dSJed Brown #undef __FUNCT__ 2062dd183c9eSJed Brown #define __FUNCT__ "MatGetSubMatrix_MPIBAIJ_Private" 206382094794SBarry Smith /* 206482094794SBarry Smith Not great since it makes two copies of the submatrix, first an SeqBAIJ 206582094794SBarry Smith in local and then by concatenating the local matrices the end result. 206682094794SBarry Smith Writing it directly would be much like MatGetSubMatrices_MPIBAIJ() 206782094794SBarry Smith */ 20684aa3045dSJed Brown PetscErrorCode MatGetSubMatrix_MPIBAIJ_Private(Mat mat,IS isrow,IS iscol,PetscInt csize,MatReuse call,Mat *newmat) 206982094794SBarry Smith { 207082094794SBarry Smith PetscErrorCode ierr; 207182094794SBarry Smith PetscMPIInt rank,size; 207282094794SBarry Smith PetscInt i,m,n,rstart,row,rend,nz,*cwork,j,bs; 207382094794SBarry Smith PetscInt *ii,*jj,nlocal,*dlens,*olens,dlen,olen,jend,mglobal; 207482094794SBarry Smith Mat *local,M,Mreuse; 207582094794SBarry Smith MatScalar *vwork,*aa; 207682094794SBarry Smith MPI_Comm comm = ((PetscObject)mat)->comm; 207782094794SBarry Smith Mat_SeqBAIJ *aij; 207882094794SBarry Smith 207982094794SBarry Smith 208082094794SBarry Smith PetscFunctionBegin; 208182094794SBarry Smith ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 208282094794SBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 208382094794SBarry Smith 208482094794SBarry Smith if (call == MAT_REUSE_MATRIX) { 208582094794SBarry Smith ierr = PetscObjectQuery((PetscObject)*newmat,"SubMatrix",(PetscObject *)&Mreuse);CHKERRQ(ierr); 2086e32f2f54SBarry Smith if (!Mreuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Submatrix passed in was not used before, cannot reuse"); 208782094794SBarry Smith local = &Mreuse; 208882094794SBarry Smith ierr = MatGetSubMatrices(mat,1,&isrow,&iscol,MAT_REUSE_MATRIX,&local);CHKERRQ(ierr); 208982094794SBarry Smith } else { 209082094794SBarry Smith ierr = MatGetSubMatrices(mat,1,&isrow,&iscol,MAT_INITIAL_MATRIX,&local);CHKERRQ(ierr); 209182094794SBarry Smith Mreuse = *local; 209282094794SBarry Smith ierr = PetscFree(local);CHKERRQ(ierr); 209382094794SBarry Smith } 209482094794SBarry Smith 209582094794SBarry Smith /* 209682094794SBarry Smith m - number of local rows 209782094794SBarry Smith n - number of columns (same on all processors) 209882094794SBarry Smith rstart - first row in new global matrix generated 209982094794SBarry Smith */ 210082094794SBarry Smith ierr = MatGetBlockSize(mat,&bs);CHKERRQ(ierr); 210182094794SBarry Smith ierr = MatGetSize(Mreuse,&m,&n);CHKERRQ(ierr); 210282094794SBarry Smith m = m/bs; 210382094794SBarry Smith n = n/bs; 210482094794SBarry Smith 210582094794SBarry Smith if (call == MAT_INITIAL_MATRIX) { 210682094794SBarry Smith aij = (Mat_SeqBAIJ*)(Mreuse)->data; 210782094794SBarry Smith ii = aij->i; 210882094794SBarry Smith jj = aij->j; 210982094794SBarry Smith 211082094794SBarry Smith /* 211182094794SBarry Smith Determine the number of non-zeros in the diagonal and off-diagonal 211282094794SBarry Smith portions of the matrix in order to do correct preallocation 211382094794SBarry Smith */ 211482094794SBarry Smith 211582094794SBarry Smith /* first get start and end of "diagonal" columns */ 211682094794SBarry Smith if (csize == PETSC_DECIDE) { 211782094794SBarry Smith ierr = ISGetSize(isrow,&mglobal);CHKERRQ(ierr); 211882094794SBarry Smith if (mglobal == n*bs) { /* square matrix */ 211982094794SBarry Smith nlocal = m; 212082094794SBarry Smith } else { 212182094794SBarry Smith nlocal = n/size + ((n % size) > rank); 212282094794SBarry Smith } 212382094794SBarry Smith } else { 212482094794SBarry Smith nlocal = csize/bs; 212582094794SBarry Smith } 212682094794SBarry Smith ierr = MPI_Scan(&nlocal,&rend,1,MPIU_INT,MPI_SUM,comm);CHKERRQ(ierr); 212782094794SBarry Smith rstart = rend - nlocal; 212865e19b50SBarry Smith if (rank == size - 1 && rend != n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Local column sizes %D do not add up to total number of columns %D",rend,n); 212982094794SBarry Smith 213082094794SBarry Smith /* next, compute all the lengths */ 213182094794SBarry Smith ierr = PetscMalloc((2*m+1)*sizeof(PetscInt),&dlens);CHKERRQ(ierr); 213282094794SBarry Smith olens = dlens + m; 213382094794SBarry Smith for (i=0; i<m; i++) { 213482094794SBarry Smith jend = ii[i+1] - ii[i]; 213582094794SBarry Smith olen = 0; 213682094794SBarry Smith dlen = 0; 213782094794SBarry Smith for (j=0; j<jend; j++) { 213882094794SBarry Smith if (*jj < rstart || *jj >= rend) olen++; 213982094794SBarry Smith else dlen++; 214082094794SBarry Smith jj++; 214182094794SBarry Smith } 214282094794SBarry Smith olens[i] = olen; 214382094794SBarry Smith dlens[i] = dlen; 214482094794SBarry Smith } 214582094794SBarry Smith ierr = MatCreate(comm,&M);CHKERRQ(ierr); 214682094794SBarry Smith ierr = MatSetSizes(M,bs*m,bs*nlocal,PETSC_DECIDE,bs*n);CHKERRQ(ierr); 214782094794SBarry Smith ierr = MatSetType(M,((PetscObject)mat)->type_name);CHKERRQ(ierr); 214882094794SBarry Smith ierr = MatMPIBAIJSetPreallocation(M,bs,0,dlens,0,olens);CHKERRQ(ierr); 214982094794SBarry Smith ierr = PetscFree(dlens);CHKERRQ(ierr); 215082094794SBarry Smith } else { 215182094794SBarry Smith PetscInt ml,nl; 215282094794SBarry Smith 215382094794SBarry Smith M = *newmat; 215482094794SBarry Smith ierr = MatGetLocalSize(M,&ml,&nl);CHKERRQ(ierr); 2155e32f2f54SBarry Smith if (ml != m) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Previous matrix must be same size/layout as request"); 215682094794SBarry Smith ierr = MatZeroEntries(M);CHKERRQ(ierr); 215782094794SBarry Smith /* 215882094794SBarry Smith The next two lines are needed so we may call MatSetValues_MPIAIJ() below directly, 215982094794SBarry Smith rather than the slower MatSetValues(). 216082094794SBarry Smith */ 216182094794SBarry Smith M->was_assembled = PETSC_TRUE; 216282094794SBarry Smith M->assembled = PETSC_FALSE; 216382094794SBarry Smith } 216482094794SBarry Smith ierr = MatSetOption(M,MAT_ROW_ORIENTED,PETSC_FALSE);CHKERRQ(ierr); 216582094794SBarry Smith ierr = MatGetOwnershipRange(M,&rstart,&rend);CHKERRQ(ierr); 216682094794SBarry Smith aij = (Mat_SeqBAIJ*)(Mreuse)->data; 216782094794SBarry Smith ii = aij->i; 216882094794SBarry Smith jj = aij->j; 216982094794SBarry Smith aa = aij->a; 217082094794SBarry Smith for (i=0; i<m; i++) { 217182094794SBarry Smith row = rstart/bs + i; 217282094794SBarry Smith nz = ii[i+1] - ii[i]; 217382094794SBarry Smith cwork = jj; jj += nz; 217482094794SBarry Smith vwork = aa; aa += nz; 217582094794SBarry Smith ierr = MatSetValuesBlocked_MPIBAIJ(M,1,&row,nz,cwork,vwork,INSERT_VALUES);CHKERRQ(ierr); 217682094794SBarry Smith } 217782094794SBarry Smith 217882094794SBarry Smith ierr = MatAssemblyBegin(M,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 217982094794SBarry Smith ierr = MatAssemblyEnd(M,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 218082094794SBarry Smith *newmat = M; 218182094794SBarry Smith 218282094794SBarry Smith /* save submatrix used in processor for next request */ 218382094794SBarry Smith if (call == MAT_INITIAL_MATRIX) { 218482094794SBarry Smith ierr = PetscObjectCompose((PetscObject)M,"SubMatrix",(PetscObject)Mreuse);CHKERRQ(ierr); 218582094794SBarry Smith ierr = PetscObjectDereference((PetscObject)Mreuse);CHKERRQ(ierr); 218682094794SBarry Smith } 218782094794SBarry Smith 218882094794SBarry Smith PetscFunctionReturn(0); 218982094794SBarry Smith } 219082094794SBarry Smith 219182094794SBarry Smith #undef __FUNCT__ 219282094794SBarry Smith #define __FUNCT__ "MatPermute_MPIBAIJ" 219382094794SBarry Smith PetscErrorCode MatPermute_MPIBAIJ(Mat A,IS rowp,IS colp,Mat *B) 219482094794SBarry Smith { 219582094794SBarry Smith MPI_Comm comm,pcomm; 219682094794SBarry Smith PetscInt first,local_size,nrows; 219782094794SBarry Smith const PetscInt *rows; 2198dbf0e21dSBarry Smith PetscMPIInt size; 219982094794SBarry Smith IS crowp,growp,irowp,lrowp,lcolp,icolp; 220082094794SBarry Smith PetscErrorCode ierr; 220182094794SBarry Smith 220282094794SBarry Smith PetscFunctionBegin; 220382094794SBarry Smith ierr = PetscObjectGetComm((PetscObject)A,&comm);CHKERRQ(ierr); 220482094794SBarry Smith /* make a collective version of 'rowp' */ 220582094794SBarry Smith ierr = PetscObjectGetComm((PetscObject)rowp,&pcomm);CHKERRQ(ierr); 220682094794SBarry Smith if (pcomm==comm) { 220782094794SBarry Smith crowp = rowp; 220882094794SBarry Smith } else { 220982094794SBarry Smith ierr = ISGetSize(rowp,&nrows);CHKERRQ(ierr); 221082094794SBarry Smith ierr = ISGetIndices(rowp,&rows);CHKERRQ(ierr); 221170b3c8c7SBarry Smith ierr = ISCreateGeneral(comm,nrows,rows,PETSC_COPY_VALUES,&crowp);CHKERRQ(ierr); 221282094794SBarry Smith ierr = ISRestoreIndices(rowp,&rows);CHKERRQ(ierr); 221382094794SBarry Smith } 221482094794SBarry Smith /* collect the global row permutation and invert it */ 221582094794SBarry Smith ierr = ISAllGather(crowp,&growp);CHKERRQ(ierr); 221682094794SBarry Smith ierr = ISSetPermutation(growp);CHKERRQ(ierr); 221782094794SBarry Smith if (pcomm!=comm) { 22186bf464f9SBarry Smith ierr = ISDestroy(&crowp);CHKERRQ(ierr); 221982094794SBarry Smith } 222082094794SBarry Smith ierr = ISInvertPermutation(growp,PETSC_DECIDE,&irowp);CHKERRQ(ierr); 222182094794SBarry Smith /* get the local target indices */ 222282094794SBarry Smith ierr = MatGetOwnershipRange(A,&first,PETSC_NULL);CHKERRQ(ierr); 222382094794SBarry Smith ierr = MatGetLocalSize(A,&local_size,PETSC_NULL);CHKERRQ(ierr); 222482094794SBarry Smith ierr = ISGetIndices(irowp,&rows);CHKERRQ(ierr); 222570b3c8c7SBarry Smith ierr = ISCreateGeneral(MPI_COMM_SELF,local_size,rows+first,PETSC_COPY_VALUES,&lrowp);CHKERRQ(ierr); 222682094794SBarry Smith ierr = ISRestoreIndices(irowp,&rows);CHKERRQ(ierr); 22276bf464f9SBarry Smith ierr = ISDestroy(&irowp);CHKERRQ(ierr); 222882094794SBarry Smith /* the column permutation is so much easier; 222982094794SBarry Smith make a local version of 'colp' and invert it */ 223082094794SBarry Smith ierr = PetscObjectGetComm((PetscObject)colp,&pcomm);CHKERRQ(ierr); 2231dbf0e21dSBarry Smith ierr = MPI_Comm_size(pcomm,&size);CHKERRQ(ierr); 2232dbf0e21dSBarry Smith if (size==1) { 223382094794SBarry Smith lcolp = colp; 223482094794SBarry Smith } else { 223582094794SBarry Smith ierr = ISGetSize(colp,&nrows);CHKERRQ(ierr); 223682094794SBarry Smith ierr = ISGetIndices(colp,&rows);CHKERRQ(ierr); 223770b3c8c7SBarry Smith ierr = ISCreateGeneral(MPI_COMM_SELF,nrows,rows,PETSC_COPY_VALUES,&lcolp);CHKERRQ(ierr); 223882094794SBarry Smith } 2239dbf0e21dSBarry Smith ierr = ISSetPermutation(lcolp);CHKERRQ(ierr); 224082094794SBarry Smith ierr = ISInvertPermutation(lcolp,PETSC_DECIDE,&icolp);CHKERRQ(ierr); 22414aa3045dSJed Brown ierr = ISSetPermutation(icolp);CHKERRQ(ierr); 2242dbf0e21dSBarry Smith if (size>1) { 224382094794SBarry Smith ierr = ISRestoreIndices(colp,&rows);CHKERRQ(ierr); 22446bf464f9SBarry Smith ierr = ISDestroy(&lcolp);CHKERRQ(ierr); 224582094794SBarry Smith } 224682094794SBarry Smith /* now we just get the submatrix */ 22474aa3045dSJed Brown ierr = MatGetSubMatrix_MPIBAIJ_Private(A,lrowp,icolp,local_size,MAT_INITIAL_MATRIX,B);CHKERRQ(ierr); 224882094794SBarry Smith /* clean up */ 22496bf464f9SBarry Smith ierr = ISDestroy(&lrowp);CHKERRQ(ierr); 22506bf464f9SBarry Smith ierr = ISDestroy(&icolp);CHKERRQ(ierr); 225182094794SBarry Smith PetscFunctionReturn(0); 225282094794SBarry Smith } 225382094794SBarry Smith 22548c7482ecSBarry Smith #undef __FUNCT__ 22558c7482ecSBarry Smith #define __FUNCT__ "MatGetGhosts_MPIBAIJ" 22567087cfbeSBarry Smith PetscErrorCode MatGetGhosts_MPIBAIJ(Mat mat,PetscInt *nghosts,const PetscInt *ghosts[]) 22578c7482ecSBarry Smith { 22588c7482ecSBarry Smith Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*) mat->data; 22598c7482ecSBarry Smith Mat_SeqBAIJ *B = (Mat_SeqBAIJ*)baij->B->data; 22608c7482ecSBarry Smith 22618c7482ecSBarry Smith PetscFunctionBegin; 22628c7482ecSBarry Smith if (nghosts) { *nghosts = B->nbs;} 22638c7482ecSBarry Smith if (ghosts) {*ghosts = baij->garray;} 22648c7482ecSBarry Smith PetscFunctionReturn(0); 22658c7482ecSBarry Smith } 22668c7482ecSBarry Smith 226709573ac7SBarry Smith extern PetscErrorCode CreateColmap_MPIBAIJ_Private(Mat); 2268f6d58c54SBarry Smith 2269f6d58c54SBarry Smith #undef __FUNCT__ 2270f6d58c54SBarry Smith #define __FUNCT__ "MatFDColoringCreate_MPIBAIJ" 2271f6d58c54SBarry Smith /* 2272f6d58c54SBarry Smith This routine is almost identical to MatFDColoringCreate_MPIBAIJ()! 2273f6d58c54SBarry Smith */ 2274f6d58c54SBarry Smith PetscErrorCode MatFDColoringCreate_MPIBAIJ(Mat mat,ISColoring iscoloring,MatFDColoring c) 2275f6d58c54SBarry Smith { 2276f6d58c54SBarry Smith Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 2277f6d58c54SBarry Smith PetscErrorCode ierr; 2278f6d58c54SBarry Smith PetscMPIInt size,*ncolsonproc,*disp,nn; 2279f6d58c54SBarry Smith PetscInt bs,i,n,nrows,j,k,m,*rows = 0,*A_ci,*A_cj,ncols,col; 2280f6d58c54SBarry Smith const PetscInt *is; 2281f6d58c54SBarry Smith PetscInt nis = iscoloring->n,nctot,*cols,*B_ci,*B_cj; 2282f6d58c54SBarry Smith PetscInt *rowhit,M,cstart,cend,colb; 2283f6d58c54SBarry Smith PetscInt *columnsforrow,l; 2284f6d58c54SBarry Smith IS *isa; 2285ace3abfcSBarry Smith PetscBool done,flg; 2286992144d0SBarry Smith ISLocalToGlobalMapping map = mat->cmap->bmapping; 2287f6d58c54SBarry Smith PetscInt *ltog = (map ? map->indices : (PetscInt*) PETSC_NULL) ,ctype=c->ctype; 2288f6d58c54SBarry Smith 2289f6d58c54SBarry Smith PetscFunctionBegin; 2290e7e72b3dSBarry Smith if (!mat->assembled) SETERRQ(((PetscObject)mat)->comm,PETSC_ERR_ARG_WRONGSTATE,"Matrix must be assembled first; MatAssemblyBegin/End();"); 2291e7e72b3dSBarry Smith if (ctype == IS_COLORING_GHOSTED && !map) SETERRQ(((PetscObject)mat)->comm,PETSC_ERR_ARG_INCOMP,"When using ghosted differencing matrix must have local to global mapping provided with MatSetLocalToGlobalMappingBlock"); 2292f6d58c54SBarry Smith 2293f6d58c54SBarry Smith ierr = ISColoringGetIS(iscoloring,PETSC_IGNORE,&isa);CHKERRQ(ierr); 2294f6d58c54SBarry Smith ierr = MatGetBlockSize(mat,&bs);CHKERRQ(ierr); 2295f6d58c54SBarry Smith M = mat->rmap->n/bs; 2296f6d58c54SBarry Smith cstart = mat->cmap->rstart/bs; 2297f6d58c54SBarry Smith cend = mat->cmap->rend/bs; 2298f6d58c54SBarry Smith c->M = mat->rmap->N/bs; /* set the global rows and columns and local rows */ 2299f6d58c54SBarry Smith c->N = mat->cmap->N/bs; 2300f6d58c54SBarry Smith c->m = mat->rmap->n/bs; 2301f6d58c54SBarry Smith c->rstart = mat->rmap->rstart/bs; 2302f6d58c54SBarry Smith 2303f6d58c54SBarry Smith c->ncolors = nis; 2304f6d58c54SBarry Smith ierr = PetscMalloc(nis*sizeof(PetscInt),&c->ncolumns);CHKERRQ(ierr); 2305f6d58c54SBarry Smith ierr = PetscMalloc(nis*sizeof(PetscInt*),&c->columns);CHKERRQ(ierr); 2306f6d58c54SBarry Smith ierr = PetscMalloc(nis*sizeof(PetscInt),&c->nrows);CHKERRQ(ierr); 2307f6d58c54SBarry Smith ierr = PetscMalloc(nis*sizeof(PetscInt*),&c->rows);CHKERRQ(ierr); 2308f6d58c54SBarry Smith ierr = PetscMalloc(nis*sizeof(PetscInt*),&c->columnsforrow);CHKERRQ(ierr); 2309f6d58c54SBarry Smith ierr = PetscLogObjectMemory(c,5*nis*sizeof(PetscInt));CHKERRQ(ierr); 2310f6d58c54SBarry Smith 2311f6d58c54SBarry Smith /* Allow access to data structures of local part of matrix */ 2312f6d58c54SBarry Smith if (!baij->colmap) { 2313f6d58c54SBarry Smith ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 2314f6d58c54SBarry Smith } 2315f6d58c54SBarry Smith ierr = MatGetColumnIJ(baij->A,0,PETSC_FALSE,PETSC_FALSE,&ncols,&A_ci,&A_cj,&done);CHKERRQ(ierr); 2316f6d58c54SBarry Smith ierr = MatGetColumnIJ(baij->B,0,PETSC_FALSE,PETSC_FALSE,&ncols,&B_ci,&B_cj,&done);CHKERRQ(ierr); 2317f6d58c54SBarry Smith 2318f6d58c54SBarry Smith ierr = PetscMalloc((M+1)*sizeof(PetscInt),&rowhit);CHKERRQ(ierr); 2319f6d58c54SBarry Smith ierr = PetscMalloc((M+1)*sizeof(PetscInt),&columnsforrow);CHKERRQ(ierr); 2320f6d58c54SBarry Smith 2321f6d58c54SBarry Smith for (i=0; i<nis; i++) { 2322f6d58c54SBarry Smith ierr = ISGetLocalSize(isa[i],&n);CHKERRQ(ierr); 2323f6d58c54SBarry Smith ierr = ISGetIndices(isa[i],&is);CHKERRQ(ierr); 2324f6d58c54SBarry Smith c->ncolumns[i] = n; 2325f6d58c54SBarry Smith if (n) { 2326f6d58c54SBarry Smith ierr = PetscMalloc(n*sizeof(PetscInt),&c->columns[i]);CHKERRQ(ierr); 2327f6d58c54SBarry Smith ierr = PetscLogObjectMemory(c,n*sizeof(PetscInt));CHKERRQ(ierr); 2328f6d58c54SBarry Smith ierr = PetscMemcpy(c->columns[i],is,n*sizeof(PetscInt));CHKERRQ(ierr); 2329f6d58c54SBarry Smith } else { 2330f6d58c54SBarry Smith c->columns[i] = 0; 2331f6d58c54SBarry Smith } 2332f6d58c54SBarry Smith 2333f6d58c54SBarry Smith if (ctype == IS_COLORING_GLOBAL){ 2334f6d58c54SBarry Smith /* Determine the total (parallel) number of columns of this color */ 2335f6d58c54SBarry Smith ierr = MPI_Comm_size(((PetscObject)mat)->comm,&size);CHKERRQ(ierr); 2336fca92195SBarry Smith ierr = PetscMalloc2(size,PetscMPIInt,&ncolsonproc,size,PetscMPIInt,&disp);CHKERRQ(ierr); 2337f6d58c54SBarry Smith 2338f6d58c54SBarry Smith nn = PetscMPIIntCast(n); 2339f6d58c54SBarry Smith ierr = MPI_Allgather(&nn,1,MPI_INT,ncolsonproc,1,MPI_INT,((PetscObject)mat)->comm);CHKERRQ(ierr); 2340f6d58c54SBarry Smith nctot = 0; for (j=0; j<size; j++) {nctot += ncolsonproc[j];} 2341f6d58c54SBarry Smith if (!nctot) { 2342f6d58c54SBarry Smith ierr = PetscInfo(mat,"Coloring of matrix has some unneeded colors with no corresponding rows\n");CHKERRQ(ierr); 2343f6d58c54SBarry Smith } 2344f6d58c54SBarry Smith 2345f6d58c54SBarry Smith disp[0] = 0; 2346f6d58c54SBarry Smith for (j=1; j<size; j++) { 2347f6d58c54SBarry Smith disp[j] = disp[j-1] + ncolsonproc[j-1]; 2348f6d58c54SBarry Smith } 2349f6d58c54SBarry Smith 2350f6d58c54SBarry Smith /* Get complete list of columns for color on each processor */ 2351f6d58c54SBarry Smith ierr = PetscMalloc((nctot+1)*sizeof(PetscInt),&cols);CHKERRQ(ierr); 2352f6d58c54SBarry Smith ierr = MPI_Allgatherv((void*)is,n,MPIU_INT,cols,ncolsonproc,disp,MPIU_INT,((PetscObject)mat)->comm);CHKERRQ(ierr); 2353fca92195SBarry Smith ierr = PetscFree2(ncolsonproc,disp);CHKERRQ(ierr); 2354f6d58c54SBarry Smith } else if (ctype == IS_COLORING_GHOSTED){ 2355f6d58c54SBarry Smith /* Determine local number of columns of this color on this process, including ghost points */ 2356f6d58c54SBarry Smith nctot = n; 2357f6d58c54SBarry Smith ierr = PetscMalloc((nctot+1)*sizeof(PetscInt),&cols);CHKERRQ(ierr); 2358f6d58c54SBarry Smith ierr = PetscMemcpy(cols,is,n*sizeof(PetscInt));CHKERRQ(ierr); 2359f6d58c54SBarry Smith } else { 2360e32f2f54SBarry Smith SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Not provided for this MatFDColoring type"); 2361f6d58c54SBarry Smith } 2362f6d58c54SBarry Smith 2363f6d58c54SBarry Smith /* 2364f6d58c54SBarry Smith Mark all rows affect by these columns 2365f6d58c54SBarry Smith */ 2366f6d58c54SBarry Smith /* Temporary option to allow for debugging/testing */ 2367f6d58c54SBarry Smith flg = PETSC_FALSE; 2368acfcf0e5SJed Brown ierr = PetscOptionsGetBool(PETSC_NULL,"-matfdcoloring_slow",&flg,PETSC_NULL);CHKERRQ(ierr); 2369f6d58c54SBarry Smith if (!flg) {/*-----------------------------------------------------------------------------*/ 2370f6d58c54SBarry Smith /* crude, fast version */ 2371f6d58c54SBarry Smith ierr = PetscMemzero(rowhit,M*sizeof(PetscInt));CHKERRQ(ierr); 2372f6d58c54SBarry Smith /* loop over columns*/ 2373f6d58c54SBarry Smith for (j=0; j<nctot; j++) { 2374f6d58c54SBarry Smith if (ctype == IS_COLORING_GHOSTED) { 2375f6d58c54SBarry Smith col = ltog[cols[j]]; 2376f6d58c54SBarry Smith } else { 2377f6d58c54SBarry Smith col = cols[j]; 2378f6d58c54SBarry Smith } 2379f6d58c54SBarry Smith if (col >= cstart && col < cend) { 2380f6d58c54SBarry Smith /* column is in diagonal block of matrix */ 2381f6d58c54SBarry Smith rows = A_cj + A_ci[col-cstart]; 2382f6d58c54SBarry Smith m = A_ci[col-cstart+1] - A_ci[col-cstart]; 2383f6d58c54SBarry Smith } else { 2384f6d58c54SBarry Smith #if defined (PETSC_USE_CTABLE) 2385cb9801acSJed Brown ierr = PetscTableFind(baij->colmap,col+1,&colb);CHKERRQ(ierr); 2386f6d58c54SBarry Smith colb --; 2387f6d58c54SBarry Smith #else 2388f6d58c54SBarry Smith colb = baij->colmap[col] - 1; 2389f6d58c54SBarry Smith #endif 2390f6d58c54SBarry Smith if (colb == -1) { 2391f6d58c54SBarry Smith m = 0; 2392f6d58c54SBarry Smith } else { 2393f6d58c54SBarry Smith colb = colb/bs; 2394f6d58c54SBarry Smith rows = B_cj + B_ci[colb]; 2395f6d58c54SBarry Smith m = B_ci[colb+1] - B_ci[colb]; 2396f6d58c54SBarry Smith } 2397f6d58c54SBarry Smith } 2398f6d58c54SBarry Smith /* loop over columns marking them in rowhit */ 2399f6d58c54SBarry Smith for (k=0; k<m; k++) { 2400f6d58c54SBarry Smith rowhit[*rows++] = col + 1; 2401f6d58c54SBarry Smith } 2402f6d58c54SBarry Smith } 2403f6d58c54SBarry Smith 2404f6d58c54SBarry Smith /* count the number of hits */ 2405f6d58c54SBarry Smith nrows = 0; 2406f6d58c54SBarry Smith for (j=0; j<M; j++) { 2407f6d58c54SBarry Smith if (rowhit[j]) nrows++; 2408f6d58c54SBarry Smith } 2409f6d58c54SBarry Smith c->nrows[i] = nrows; 2410f6d58c54SBarry Smith ierr = PetscMalloc((nrows+1)*sizeof(PetscInt),&c->rows[i]);CHKERRQ(ierr); 2411f6d58c54SBarry Smith ierr = PetscMalloc((nrows+1)*sizeof(PetscInt),&c->columnsforrow[i]);CHKERRQ(ierr); 2412f6d58c54SBarry Smith ierr = PetscLogObjectMemory(c,2*(nrows+1)*sizeof(PetscInt));CHKERRQ(ierr); 2413f6d58c54SBarry Smith nrows = 0; 2414f6d58c54SBarry Smith for (j=0; j<M; j++) { 2415f6d58c54SBarry Smith if (rowhit[j]) { 2416f6d58c54SBarry Smith c->rows[i][nrows] = j; 2417f6d58c54SBarry Smith c->columnsforrow[i][nrows] = rowhit[j] - 1; 2418f6d58c54SBarry Smith nrows++; 2419f6d58c54SBarry Smith } 2420f6d58c54SBarry Smith } 2421f6d58c54SBarry Smith } else {/*-------------------------------------------------------------------------------*/ 2422f6d58c54SBarry Smith /* slow version, using rowhit as a linked list */ 2423f6d58c54SBarry Smith PetscInt currentcol,fm,mfm; 2424f6d58c54SBarry Smith rowhit[M] = M; 2425f6d58c54SBarry Smith nrows = 0; 2426f6d58c54SBarry Smith /* loop over columns*/ 2427f6d58c54SBarry Smith for (j=0; j<nctot; j++) { 2428f6d58c54SBarry Smith if (ctype == IS_COLORING_GHOSTED) { 2429f6d58c54SBarry Smith col = ltog[cols[j]]; 2430f6d58c54SBarry Smith } else { 2431f6d58c54SBarry Smith col = cols[j]; 2432f6d58c54SBarry Smith } 2433f6d58c54SBarry Smith if (col >= cstart && col < cend) { 2434f6d58c54SBarry Smith /* column is in diagonal block of matrix */ 2435f6d58c54SBarry Smith rows = A_cj + A_ci[col-cstart]; 2436f6d58c54SBarry Smith m = A_ci[col-cstart+1] - A_ci[col-cstart]; 2437f6d58c54SBarry Smith } else { 2438f6d58c54SBarry Smith #if defined (PETSC_USE_CTABLE) 2439f6d58c54SBarry Smith ierr = PetscTableFind(baij->colmap,col+1,&colb);CHKERRQ(ierr); 2440f6d58c54SBarry Smith colb --; 2441f6d58c54SBarry Smith #else 2442f6d58c54SBarry Smith colb = baij->colmap[col] - 1; 2443f6d58c54SBarry Smith #endif 2444f6d58c54SBarry Smith if (colb == -1) { 2445f6d58c54SBarry Smith m = 0; 2446f6d58c54SBarry Smith } else { 2447f6d58c54SBarry Smith colb = colb/bs; 2448f6d58c54SBarry Smith rows = B_cj + B_ci[colb]; 2449f6d58c54SBarry Smith m = B_ci[colb+1] - B_ci[colb]; 2450f6d58c54SBarry Smith } 2451f6d58c54SBarry Smith } 2452f6d58c54SBarry Smith 2453f6d58c54SBarry Smith /* loop over columns marking them in rowhit */ 2454f6d58c54SBarry Smith fm = M; /* fm points to first entry in linked list */ 2455f6d58c54SBarry Smith for (k=0; k<m; k++) { 2456f6d58c54SBarry Smith currentcol = *rows++; 2457f6d58c54SBarry Smith /* is it already in the list? */ 2458f6d58c54SBarry Smith do { 2459f6d58c54SBarry Smith mfm = fm; 2460f6d58c54SBarry Smith fm = rowhit[fm]; 2461f6d58c54SBarry Smith } while (fm < currentcol); 2462f6d58c54SBarry Smith /* not in list so add it */ 2463f6d58c54SBarry Smith if (fm != currentcol) { 2464f6d58c54SBarry Smith nrows++; 2465f6d58c54SBarry Smith columnsforrow[currentcol] = col; 2466f6d58c54SBarry Smith /* next three lines insert new entry into linked list */ 2467f6d58c54SBarry Smith rowhit[mfm] = currentcol; 2468f6d58c54SBarry Smith rowhit[currentcol] = fm; 2469f6d58c54SBarry Smith fm = currentcol; 2470f6d58c54SBarry Smith /* fm points to present position in list since we know the columns are sorted */ 2471f6d58c54SBarry Smith } else { 2472e32f2f54SBarry Smith SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Invalid coloring of matrix detected"); 2473f6d58c54SBarry Smith } 2474f6d58c54SBarry Smith } 2475f6d58c54SBarry Smith } 2476f6d58c54SBarry Smith c->nrows[i] = nrows; 2477f6d58c54SBarry Smith ierr = PetscMalloc((nrows+1)*sizeof(PetscInt),&c->rows[i]);CHKERRQ(ierr); 2478f6d58c54SBarry Smith ierr = PetscMalloc((nrows+1)*sizeof(PetscInt),&c->columnsforrow[i]);CHKERRQ(ierr); 2479f6d58c54SBarry Smith ierr = PetscLogObjectMemory(c,(nrows+1)*sizeof(PetscInt));CHKERRQ(ierr); 2480f6d58c54SBarry Smith /* now store the linked list of rows into c->rows[i] */ 2481f6d58c54SBarry Smith nrows = 0; 2482f6d58c54SBarry Smith fm = rowhit[M]; 2483f6d58c54SBarry Smith do { 2484f6d58c54SBarry Smith c->rows[i][nrows] = fm; 2485f6d58c54SBarry Smith c->columnsforrow[i][nrows++] = columnsforrow[fm]; 2486f6d58c54SBarry Smith fm = rowhit[fm]; 2487f6d58c54SBarry Smith } while (fm < M); 2488f6d58c54SBarry Smith } /* ---------------------------------------------------------------------------------------*/ 2489f6d58c54SBarry Smith ierr = PetscFree(cols);CHKERRQ(ierr); 2490f6d58c54SBarry Smith } 2491f6d58c54SBarry Smith 2492f6d58c54SBarry Smith /* Optimize by adding the vscale, and scaleforrow[][] fields */ 2493f6d58c54SBarry Smith /* 2494f6d58c54SBarry Smith vscale will contain the "diagonal" on processor scalings followed by the off processor 2495f6d58c54SBarry Smith */ 2496f6d58c54SBarry Smith if (ctype == IS_COLORING_GLOBAL) { 2497f6d58c54SBarry Smith PetscInt *garray; 2498f6d58c54SBarry Smith ierr = PetscMalloc(baij->B->cmap->n*sizeof(PetscInt),&garray);CHKERRQ(ierr); 2499f6d58c54SBarry Smith for (i=0; i<baij->B->cmap->n/bs; i++) { 2500f6d58c54SBarry Smith for (j=0; j<bs; j++) { 2501f6d58c54SBarry Smith garray[i*bs+j] = bs*baij->garray[i]+j; 2502f6d58c54SBarry Smith } 2503f6d58c54SBarry Smith } 2504f6d58c54SBarry Smith ierr = VecCreateGhost(((PetscObject)mat)->comm,baij->A->rmap->n,PETSC_DETERMINE,baij->B->cmap->n,garray,&c->vscale);CHKERRQ(ierr); 2505f6d58c54SBarry Smith ierr = PetscFree(garray);CHKERRQ(ierr); 2506f6d58c54SBarry Smith CHKMEMQ; 2507f6d58c54SBarry Smith ierr = PetscMalloc(c->ncolors*sizeof(PetscInt*),&c->vscaleforrow);CHKERRQ(ierr); 2508f6d58c54SBarry Smith for (k=0; k<c->ncolors; k++) { 2509f6d58c54SBarry Smith ierr = PetscMalloc((c->nrows[k]+1)*sizeof(PetscInt),&c->vscaleforrow[k]);CHKERRQ(ierr); 2510f6d58c54SBarry Smith for (l=0; l<c->nrows[k]; l++) { 2511f6d58c54SBarry Smith col = c->columnsforrow[k][l]; 2512f6d58c54SBarry Smith if (col >= cstart && col < cend) { 2513f6d58c54SBarry Smith /* column is in diagonal block of matrix */ 2514f6d58c54SBarry Smith colb = col - cstart; 2515f6d58c54SBarry Smith } else { 2516f6d58c54SBarry Smith /* column is in "off-processor" part */ 2517f6d58c54SBarry Smith #if defined (PETSC_USE_CTABLE) 2518f6d58c54SBarry Smith ierr = PetscTableFind(baij->colmap,col+1,&colb);CHKERRQ(ierr); 2519f6d58c54SBarry Smith colb --; 2520f6d58c54SBarry Smith #else 2521f6d58c54SBarry Smith colb = baij->colmap[col] - 1; 2522f6d58c54SBarry Smith #endif 2523f6d58c54SBarry Smith colb = colb/bs; 2524f6d58c54SBarry Smith colb += cend - cstart; 2525f6d58c54SBarry Smith } 2526f6d58c54SBarry Smith c->vscaleforrow[k][l] = colb; 2527f6d58c54SBarry Smith } 2528f6d58c54SBarry Smith } 2529f6d58c54SBarry Smith } else if (ctype == IS_COLORING_GHOSTED) { 2530f6d58c54SBarry Smith /* Get gtol mapping */ 2531f6d58c54SBarry Smith PetscInt N = mat->cmap->N, *gtol; 2532f6d58c54SBarry Smith ierr = PetscMalloc((N+1)*sizeof(PetscInt),>ol);CHKERRQ(ierr); 2533f6d58c54SBarry Smith for (i=0; i<N; i++) gtol[i] = -1; 2534f6d58c54SBarry Smith for (i=0; i<map->n; i++) gtol[ltog[i]] = i; 2535f6d58c54SBarry Smith 2536f6d58c54SBarry Smith c->vscale = 0; /* will be created in MatFDColoringApply() */ 2537f6d58c54SBarry Smith ierr = PetscMalloc(c->ncolors*sizeof(PetscInt*),&c->vscaleforrow);CHKERRQ(ierr); 2538f6d58c54SBarry Smith for (k=0; k<c->ncolors; k++) { 2539f6d58c54SBarry Smith ierr = PetscMalloc((c->nrows[k]+1)*sizeof(PetscInt),&c->vscaleforrow[k]);CHKERRQ(ierr); 2540f6d58c54SBarry Smith for (l=0; l<c->nrows[k]; l++) { 2541f6d58c54SBarry Smith col = c->columnsforrow[k][l]; /* global column index */ 2542f6d58c54SBarry Smith c->vscaleforrow[k][l] = gtol[col]; /* local column index */ 2543f6d58c54SBarry Smith } 2544f6d58c54SBarry Smith } 2545f6d58c54SBarry Smith ierr = PetscFree(gtol);CHKERRQ(ierr); 2546f6d58c54SBarry Smith } 2547f6d58c54SBarry Smith ierr = ISColoringRestoreIS(iscoloring,&isa);CHKERRQ(ierr); 2548f6d58c54SBarry Smith 2549f6d58c54SBarry Smith ierr = PetscFree(rowhit);CHKERRQ(ierr); 2550f6d58c54SBarry Smith ierr = PetscFree(columnsforrow);CHKERRQ(ierr); 2551f6d58c54SBarry Smith ierr = MatRestoreColumnIJ(baij->A,0,PETSC_FALSE,PETSC_FALSE,&ncols,&A_ci,&A_cj,&done);CHKERRQ(ierr); 2552f6d58c54SBarry Smith ierr = MatRestoreColumnIJ(baij->B,0,PETSC_FALSE,PETSC_FALSE,&ncols,&B_ci,&B_cj,&done);CHKERRQ(ierr); 2553f6d58c54SBarry Smith CHKMEMQ; 2554f6d58c54SBarry Smith PetscFunctionReturn(0); 2555f6d58c54SBarry Smith } 2556f6d58c54SBarry Smith 2557f6d58c54SBarry Smith #undef __FUNCT__ 2558d1adec66SJed Brown #define __FUNCT__ "MatGetSeqNonzeroStructure_MPIBAIJ" 2559d1adec66SJed Brown PetscErrorCode MatGetSeqNonzeroStructure_MPIBAIJ(Mat A,Mat *newmat) 2560f6d58c54SBarry Smith { 2561f6d58c54SBarry Smith Mat B; 2562f6d58c54SBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 2563f6d58c54SBarry Smith Mat_SeqBAIJ *ad = (Mat_SeqBAIJ*)a->A->data,*bd = (Mat_SeqBAIJ*)a->B->data; 2564f6d58c54SBarry Smith Mat_SeqAIJ *b; 2565f6d58c54SBarry Smith PetscErrorCode ierr; 2566f6d58c54SBarry Smith PetscMPIInt size,rank,*recvcounts = 0,*displs = 0; 2567f6d58c54SBarry Smith PetscInt sendcount,i,*rstarts = A->rmap->range,n,cnt,j,bs = A->rmap->bs; 2568f6d58c54SBarry Smith PetscInt m,*garray = a->garray,*lens,*jsendbuf,*a_jsendbuf,*b_jsendbuf; 2569f6d58c54SBarry Smith 2570f6d58c54SBarry Smith PetscFunctionBegin; 2571f6d58c54SBarry Smith ierr = MPI_Comm_size(((PetscObject)A)->comm,&size);CHKERRQ(ierr); 2572f6d58c54SBarry Smith ierr = MPI_Comm_rank(((PetscObject)A)->comm,&rank);CHKERRQ(ierr); 2573f6d58c54SBarry Smith 2574f6d58c54SBarry Smith /* ---------------------------------------------------------------- 2575f6d58c54SBarry Smith Tell every processor the number of nonzeros per row 2576f6d58c54SBarry Smith */ 2577f6d58c54SBarry Smith ierr = PetscMalloc((A->rmap->N/bs)*sizeof(PetscInt),&lens);CHKERRQ(ierr); 2578f6d58c54SBarry Smith for (i=A->rmap->rstart/bs; i<A->rmap->rend/bs; i++) { 2579f6d58c54SBarry Smith lens[i] = ad->i[i-A->rmap->rstart/bs+1] - ad->i[i-A->rmap->rstart/bs] + bd->i[i-A->rmap->rstart/bs+1] - bd->i[i-A->rmap->rstart/bs]; 2580f6d58c54SBarry Smith } 2581f6d58c54SBarry Smith sendcount = A->rmap->rend/bs - A->rmap->rstart/bs; 2582f6d58c54SBarry Smith ierr = PetscMalloc(2*size*sizeof(PetscMPIInt),&recvcounts);CHKERRQ(ierr); 2583f6d58c54SBarry Smith displs = recvcounts + size; 2584f6d58c54SBarry Smith for (i=0; i<size; i++) { 2585f6d58c54SBarry Smith recvcounts[i] = A->rmap->range[i+1]/bs - A->rmap->range[i]/bs; 2586f6d58c54SBarry Smith displs[i] = A->rmap->range[i]/bs; 2587f6d58c54SBarry Smith } 2588f6d58c54SBarry Smith #if defined(PETSC_HAVE_MPI_IN_PLACE) 2589f6d58c54SBarry Smith ierr = MPI_Allgatherv(MPI_IN_PLACE,0,MPI_DATATYPE_NULL,lens,recvcounts,displs,MPIU_INT,((PetscObject)A)->comm);CHKERRQ(ierr); 2590f6d58c54SBarry Smith #else 2591f6d58c54SBarry Smith ierr = MPI_Allgatherv(lens+A->rmap->rstart/bs,sendcount,MPIU_INT,lens,recvcounts,displs,MPIU_INT,((PetscObject)A)->comm);CHKERRQ(ierr); 2592f6d58c54SBarry Smith #endif 2593f6d58c54SBarry Smith /* --------------------------------------------------------------- 2594f6d58c54SBarry Smith Create the sequential matrix of the same type as the local block diagonal 2595f6d58c54SBarry Smith */ 2596f6d58c54SBarry Smith ierr = MatCreate(PETSC_COMM_SELF,&B);CHKERRQ(ierr); 2597f6d58c54SBarry Smith ierr = MatSetSizes(B,A->rmap->N/bs,A->cmap->N/bs,PETSC_DETERMINE,PETSC_DETERMINE);CHKERRQ(ierr); 2598f6d58c54SBarry Smith ierr = MatSetType(B,MATSEQAIJ);CHKERRQ(ierr); 2599f6d58c54SBarry Smith ierr = MatSeqAIJSetPreallocation(B,0,lens);CHKERRQ(ierr); 2600f6d58c54SBarry Smith b = (Mat_SeqAIJ *)B->data; 2601f6d58c54SBarry Smith 2602f6d58c54SBarry Smith /*-------------------------------------------------------------------- 2603f6d58c54SBarry Smith Copy my part of matrix column indices over 2604f6d58c54SBarry Smith */ 2605f6d58c54SBarry Smith sendcount = ad->nz + bd->nz; 2606f6d58c54SBarry Smith jsendbuf = b->j + b->i[rstarts[rank]/bs]; 2607f6d58c54SBarry Smith a_jsendbuf = ad->j; 2608f6d58c54SBarry Smith b_jsendbuf = bd->j; 2609f6d58c54SBarry Smith n = A->rmap->rend/bs - A->rmap->rstart/bs; 2610f6d58c54SBarry Smith cnt = 0; 2611f6d58c54SBarry Smith for (i=0; i<n; i++) { 2612f6d58c54SBarry Smith 2613f6d58c54SBarry Smith /* put in lower diagonal portion */ 2614f6d58c54SBarry Smith m = bd->i[i+1] - bd->i[i]; 2615f6d58c54SBarry Smith while (m > 0) { 2616f6d58c54SBarry Smith /* is it above diagonal (in bd (compressed) numbering) */ 2617f6d58c54SBarry Smith if (garray[*b_jsendbuf] > A->rmap->rstart/bs + i) break; 2618f6d58c54SBarry Smith jsendbuf[cnt++] = garray[*b_jsendbuf++]; 2619f6d58c54SBarry Smith m--; 2620f6d58c54SBarry Smith } 2621f6d58c54SBarry Smith 2622f6d58c54SBarry Smith /* put in diagonal portion */ 2623f6d58c54SBarry Smith for (j=ad->i[i]; j<ad->i[i+1]; j++) { 2624f6d58c54SBarry Smith jsendbuf[cnt++] = A->rmap->rstart/bs + *a_jsendbuf++; 2625f6d58c54SBarry Smith } 2626f6d58c54SBarry Smith 2627f6d58c54SBarry Smith /* put in upper diagonal portion */ 2628f6d58c54SBarry Smith while (m-- > 0) { 2629f6d58c54SBarry Smith jsendbuf[cnt++] = garray[*b_jsendbuf++]; 2630f6d58c54SBarry Smith } 2631f6d58c54SBarry Smith } 2632e32f2f54SBarry Smith if (cnt != sendcount) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Corrupted PETSc matrix: nz given %D actual nz %D",sendcount,cnt); 2633f6d58c54SBarry Smith 2634f6d58c54SBarry Smith /*-------------------------------------------------------------------- 2635f6d58c54SBarry Smith Gather all column indices to all processors 2636f6d58c54SBarry Smith */ 2637f6d58c54SBarry Smith for (i=0; i<size; i++) { 2638f6d58c54SBarry Smith recvcounts[i] = 0; 2639f6d58c54SBarry Smith for (j=A->rmap->range[i]/bs; j<A->rmap->range[i+1]/bs; j++) { 2640f6d58c54SBarry Smith recvcounts[i] += lens[j]; 2641f6d58c54SBarry Smith } 2642f6d58c54SBarry Smith } 2643f6d58c54SBarry Smith displs[0] = 0; 2644f6d58c54SBarry Smith for (i=1; i<size; i++) { 2645f6d58c54SBarry Smith displs[i] = displs[i-1] + recvcounts[i-1]; 2646f6d58c54SBarry Smith } 2647f6d58c54SBarry Smith #if defined(PETSC_HAVE_MPI_IN_PLACE) 2648f6d58c54SBarry Smith ierr = MPI_Allgatherv(MPI_IN_PLACE,0,MPI_DATATYPE_NULL,b->j,recvcounts,displs,MPIU_INT,((PetscObject)A)->comm);CHKERRQ(ierr); 2649f6d58c54SBarry Smith #else 2650f6d58c54SBarry Smith ierr = MPI_Allgatherv(jsendbuf,sendcount,MPIU_INT,b->j,recvcounts,displs,MPIU_INT,((PetscObject)A)->comm);CHKERRQ(ierr); 2651f6d58c54SBarry Smith #endif 2652f6d58c54SBarry Smith /*-------------------------------------------------------------------- 2653f6d58c54SBarry Smith Assemble the matrix into useable form (note numerical values not yet set) 2654f6d58c54SBarry Smith */ 2655f6d58c54SBarry Smith /* set the b->ilen (length of each row) values */ 2656f6d58c54SBarry Smith ierr = PetscMemcpy(b->ilen,lens,(A->rmap->N/bs)*sizeof(PetscInt));CHKERRQ(ierr); 2657f6d58c54SBarry Smith /* set the b->i indices */ 2658f6d58c54SBarry Smith b->i[0] = 0; 2659f6d58c54SBarry Smith for (i=1; i<=A->rmap->N/bs; i++) { 2660f6d58c54SBarry Smith b->i[i] = b->i[i-1] + lens[i-1]; 2661f6d58c54SBarry Smith } 2662f6d58c54SBarry Smith ierr = PetscFree(lens);CHKERRQ(ierr); 2663f6d58c54SBarry Smith ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 2664f6d58c54SBarry Smith ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 2665f6d58c54SBarry Smith ierr = PetscFree(recvcounts);CHKERRQ(ierr); 2666f6d58c54SBarry Smith 2667f6d58c54SBarry Smith if (A->symmetric){ 2668f6d58c54SBarry Smith ierr = MatSetOption(B,MAT_SYMMETRIC,PETSC_TRUE);CHKERRQ(ierr); 2669f6d58c54SBarry Smith } else if (A->hermitian) { 2670f6d58c54SBarry Smith ierr = MatSetOption(B,MAT_HERMITIAN,PETSC_TRUE);CHKERRQ(ierr); 2671f6d58c54SBarry Smith } else if (A->structurally_symmetric) { 2672f6d58c54SBarry Smith ierr = MatSetOption(B,MAT_STRUCTURALLY_SYMMETRIC,PETSC_TRUE);CHKERRQ(ierr); 2673f6d58c54SBarry Smith } 2674f6d58c54SBarry Smith *newmat = B; 2675f6d58c54SBarry Smith PetscFunctionReturn(0); 2676f6d58c54SBarry Smith } 2677f6d58c54SBarry Smith 2678b1a666ecSBarry Smith #undef __FUNCT__ 2679b1a666ecSBarry Smith #define __FUNCT__ "MatSOR_MPIBAIJ" 2680b1a666ecSBarry Smith PetscErrorCode MatSOR_MPIBAIJ(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx) 2681b1a666ecSBarry Smith { 2682b1a666ecSBarry Smith Mat_MPIBAIJ *mat = (Mat_MPIBAIJ*)matin->data; 2683b1a666ecSBarry Smith PetscErrorCode ierr; 2684b1a666ecSBarry Smith Vec bb1 = 0; 2685b1a666ecSBarry Smith 2686b1a666ecSBarry Smith PetscFunctionBegin; 2687b1a666ecSBarry Smith if (its > 1 || ~flag & SOR_ZERO_INITIAL_GUESS) { 2688b1a666ecSBarry Smith ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr); 2689b1a666ecSBarry Smith } 2690b1a666ecSBarry Smith 2691b1a666ecSBarry Smith if (flag == SOR_APPLY_UPPER) { 2692b1a666ecSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr); 2693b1a666ecSBarry Smith PetscFunctionReturn(0); 2694b1a666ecSBarry Smith } 2695b1a666ecSBarry Smith 2696b1a666ecSBarry Smith if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP){ 2697b1a666ecSBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 2698b1a666ecSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr); 2699b1a666ecSBarry Smith its--; 2700b1a666ecSBarry Smith } 2701b1a666ecSBarry Smith 2702b1a666ecSBarry Smith while (its--) { 2703b1a666ecSBarry Smith ierr = VecScatterBegin(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 2704b1a666ecSBarry Smith ierr = VecScatterEnd(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 2705b1a666ecSBarry Smith 2706b1a666ecSBarry Smith /* update rhs: bb1 = bb - B*x */ 2707b1a666ecSBarry Smith ierr = VecScale(mat->lvec,-1.0);CHKERRQ(ierr); 2708b1a666ecSBarry Smith ierr = (*mat->B->ops->multadd)(mat->B,mat->lvec,bb,bb1);CHKERRQ(ierr); 2709b1a666ecSBarry Smith 2710b1a666ecSBarry Smith /* local sweep */ 2711b1a666ecSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,1,xx);CHKERRQ(ierr); 2712b1a666ecSBarry Smith } 2713b1a666ecSBarry Smith } else if (flag & SOR_LOCAL_FORWARD_SWEEP){ 2714b1a666ecSBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 2715b1a666ecSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr); 2716b1a666ecSBarry Smith its--; 2717b1a666ecSBarry Smith } 2718b1a666ecSBarry Smith while (its--) { 2719b1a666ecSBarry Smith ierr = VecScatterBegin(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 2720b1a666ecSBarry Smith ierr = VecScatterEnd(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 2721b1a666ecSBarry Smith 2722b1a666ecSBarry Smith /* update rhs: bb1 = bb - B*x */ 2723b1a666ecSBarry Smith ierr = VecScale(mat->lvec,-1.0);CHKERRQ(ierr); 2724b1a666ecSBarry Smith ierr = (*mat->B->ops->multadd)(mat->B,mat->lvec,bb,bb1);CHKERRQ(ierr); 2725b1a666ecSBarry Smith 2726b1a666ecSBarry Smith /* local sweep */ 2727b1a666ecSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_FORWARD_SWEEP,fshift,lits,1,xx);CHKERRQ(ierr); 2728b1a666ecSBarry Smith } 2729b1a666ecSBarry Smith } else if (flag & SOR_LOCAL_BACKWARD_SWEEP){ 2730b1a666ecSBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 2731b1a666ecSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr); 2732b1a666ecSBarry Smith its--; 2733b1a666ecSBarry Smith } 2734b1a666ecSBarry Smith while (its--) { 2735b1a666ecSBarry Smith ierr = VecScatterBegin(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 2736b1a666ecSBarry Smith ierr = VecScatterEnd(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 2737b1a666ecSBarry Smith 2738b1a666ecSBarry Smith /* update rhs: bb1 = bb - B*x */ 2739b1a666ecSBarry Smith ierr = VecScale(mat->lvec,-1.0);CHKERRQ(ierr); 2740b1a666ecSBarry Smith ierr = (*mat->B->ops->multadd)(mat->B,mat->lvec,bb,bb1);CHKERRQ(ierr); 2741b1a666ecSBarry Smith 2742b1a666ecSBarry Smith /* local sweep */ 2743b1a666ecSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_BACKWARD_SWEEP,fshift,lits,1,xx);CHKERRQ(ierr); 2744b1a666ecSBarry Smith } 2745e7e72b3dSBarry Smith } else SETERRQ(((PetscObject)matin)->comm,PETSC_ERR_SUP,"Parallel version of SOR requested not supported"); 2746b1a666ecSBarry Smith 27476bf464f9SBarry Smith ierr = VecDestroy(&bb1);CHKERRQ(ierr); 2748b1a666ecSBarry Smith PetscFunctionReturn(0); 2749b1a666ecSBarry Smith } 2750b1a666ecSBarry Smith 27517087cfbeSBarry Smith extern PetscErrorCode MatFDColoringApply_BAIJ(Mat,MatFDColoring,Vec,MatStructure*,void*); 2752f6d58c54SBarry Smith 2753bbead8a2SBarry Smith #undef __FUNCT__ 2754bbead8a2SBarry Smith #define __FUNCT__ "MatInvertBlockDiagonal_MPIBAIJ" 2755bbead8a2SBarry Smith PetscErrorCode MatInvertBlockDiagonal_MPIBAIJ(Mat A,PetscScalar **values) 2756bbead8a2SBarry Smith { 2757bbead8a2SBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ*) A->data; 2758bbead8a2SBarry Smith PetscErrorCode ierr; 2759bbead8a2SBarry Smith 2760bbead8a2SBarry Smith PetscFunctionBegin; 2761bbead8a2SBarry Smith ierr = MatInvertBlockDiagonal(a->A,values);CHKERRQ(ierr); 2762bbead8a2SBarry Smith PetscFunctionReturn(0); 2763bbead8a2SBarry Smith } 2764bbead8a2SBarry Smith 27658c7482ecSBarry Smith 276679bdfe76SSatish Balay /* -------------------------------------------------------------------*/ 2767cc2dc46cSBarry Smith static struct _MatOps MatOps_Values = { 2768cc2dc46cSBarry Smith MatSetValues_MPIBAIJ, 2769cc2dc46cSBarry Smith MatGetRow_MPIBAIJ, 2770cc2dc46cSBarry Smith MatRestoreRow_MPIBAIJ, 2771cc2dc46cSBarry Smith MatMult_MPIBAIJ, 277297304618SKris Buschelman /* 4*/ MatMultAdd_MPIBAIJ, 27737c922b88SBarry Smith MatMultTranspose_MPIBAIJ, 27747c922b88SBarry Smith MatMultTransposeAdd_MPIBAIJ, 2775cc2dc46cSBarry Smith 0, 2776cc2dc46cSBarry Smith 0, 2777cc2dc46cSBarry Smith 0, 277897304618SKris Buschelman /*10*/ 0, 2779cc2dc46cSBarry Smith 0, 2780cc2dc46cSBarry Smith 0, 2781b1a666ecSBarry Smith MatSOR_MPIBAIJ, 2782cc2dc46cSBarry Smith MatTranspose_MPIBAIJ, 278397304618SKris Buschelman /*15*/ MatGetInfo_MPIBAIJ, 27847fc3c18eSBarry Smith MatEqual_MPIBAIJ, 2785cc2dc46cSBarry Smith MatGetDiagonal_MPIBAIJ, 2786cc2dc46cSBarry Smith MatDiagonalScale_MPIBAIJ, 2787cc2dc46cSBarry Smith MatNorm_MPIBAIJ, 278897304618SKris Buschelman /*20*/ MatAssemblyBegin_MPIBAIJ, 2789cc2dc46cSBarry Smith MatAssemblyEnd_MPIBAIJ, 2790cc2dc46cSBarry Smith MatSetOption_MPIBAIJ, 2791cc2dc46cSBarry Smith MatZeroEntries_MPIBAIJ, 2792d519adbfSMatthew Knepley /*24*/ MatZeroRows_MPIBAIJ, 2793cc2dc46cSBarry Smith 0, 2794cc2dc46cSBarry Smith 0, 2795cc2dc46cSBarry Smith 0, 2796cc2dc46cSBarry Smith 0, 2797*4994cf47SJed Brown /*29*/ MatSetUp_MPIBAIJ, 2798273d9f13SBarry Smith 0, 2799cc2dc46cSBarry Smith 0, 2800cc2dc46cSBarry Smith 0, 2801cc2dc46cSBarry Smith 0, 2802d519adbfSMatthew Knepley /*34*/ MatDuplicate_MPIBAIJ, 2803cc2dc46cSBarry Smith 0, 2804cc2dc46cSBarry Smith 0, 2805cc2dc46cSBarry Smith 0, 2806cc2dc46cSBarry Smith 0, 2807d519adbfSMatthew Knepley /*39*/ MatAXPY_MPIBAIJ, 2808cc2dc46cSBarry Smith MatGetSubMatrices_MPIBAIJ, 2809cc2dc46cSBarry Smith MatIncreaseOverlap_MPIBAIJ, 2810cc2dc46cSBarry Smith MatGetValues_MPIBAIJ, 28113c896bc6SHong Zhang MatCopy_MPIBAIJ, 2812d519adbfSMatthew Knepley /*44*/ 0, 2813cc2dc46cSBarry Smith MatScale_MPIBAIJ, 2814cc2dc46cSBarry Smith 0, 2815cc2dc46cSBarry Smith 0, 2816cc2dc46cSBarry Smith 0, 281741c166b1SJed Brown /*49*/ MatSetBlockSize_MPIBAIJ, 2818cc2dc46cSBarry Smith 0, 2819cc2dc46cSBarry Smith 0, 2820cc2dc46cSBarry Smith 0, 2821cc2dc46cSBarry Smith 0, 2822f6d58c54SBarry Smith /*54*/ MatFDColoringCreate_MPIBAIJ, 2823cc2dc46cSBarry Smith 0, 2824cc2dc46cSBarry Smith MatSetUnfactored_MPIBAIJ, 282582094794SBarry Smith MatPermute_MPIBAIJ, 2826cc2dc46cSBarry Smith MatSetValuesBlocked_MPIBAIJ, 2827d519adbfSMatthew Knepley /*59*/ MatGetSubMatrix_MPIBAIJ, 2828f14a1c24SBarry Smith MatDestroy_MPIBAIJ, 2829f14a1c24SBarry Smith MatView_MPIBAIJ, 2830357abbc8SBarry Smith 0, 28317843d17aSBarry Smith 0, 2832d519adbfSMatthew Knepley /*64*/ 0, 28337843d17aSBarry Smith 0, 28347843d17aSBarry Smith 0, 28357843d17aSBarry Smith 0, 28367843d17aSBarry Smith 0, 2837d519adbfSMatthew Knepley /*69*/ MatGetRowMaxAbs_MPIBAIJ, 28387843d17aSBarry Smith 0, 283997304618SKris Buschelman 0, 284097304618SKris Buschelman 0, 284197304618SKris Buschelman 0, 2842d519adbfSMatthew Knepley /*74*/ 0, 2843f6d58c54SBarry Smith MatFDColoringApply_BAIJ, 284497304618SKris Buschelman 0, 284597304618SKris Buschelman 0, 284697304618SKris Buschelman 0, 2847d519adbfSMatthew Knepley /*79*/ 0, 284897304618SKris Buschelman 0, 284997304618SKris Buschelman 0, 285097304618SKris Buschelman 0, 28515bba2384SShri Abhyankar MatLoad_MPIBAIJ, 2852d519adbfSMatthew Knepley /*84*/ 0, 2853865e5f61SKris Buschelman 0, 2854865e5f61SKris Buschelman 0, 2855865e5f61SKris Buschelman 0, 2856865e5f61SKris Buschelman 0, 2857d519adbfSMatthew Knepley /*89*/ 0, 2858865e5f61SKris Buschelman 0, 2859865e5f61SKris Buschelman 0, 2860865e5f61SKris Buschelman 0, 2861865e5f61SKris Buschelman 0, 2862d519adbfSMatthew Knepley /*94*/ 0, 2863865e5f61SKris Buschelman 0, 2864865e5f61SKris Buschelman 0, 286599cafbc1SBarry Smith 0, 286699cafbc1SBarry Smith 0, 2867d519adbfSMatthew Knepley /*99*/ 0, 286899cafbc1SBarry Smith 0, 286999cafbc1SBarry Smith 0, 287099cafbc1SBarry Smith 0, 287199cafbc1SBarry Smith 0, 2872d519adbfSMatthew Knepley /*104*/0, 287399cafbc1SBarry Smith MatRealPart_MPIBAIJ, 28748c7482ecSBarry Smith MatImaginaryPart_MPIBAIJ, 28758c7482ecSBarry Smith 0, 28768c7482ecSBarry Smith 0, 2877d519adbfSMatthew Knepley /*109*/0, 28788c7482ecSBarry Smith 0, 28798c7482ecSBarry Smith 0, 28808c7482ecSBarry Smith 0, 28818c7482ecSBarry Smith 0, 2882d1adec66SJed Brown /*114*/MatGetSeqNonzeroStructure_MPIBAIJ, 28838c7482ecSBarry Smith 0, 28844683f7a4SShri Abhyankar MatGetGhosts_MPIBAIJ, 28854683f7a4SShri Abhyankar 0, 28864683f7a4SShri Abhyankar 0, 28874683f7a4SShri Abhyankar /*119*/0, 28884683f7a4SShri Abhyankar 0, 28894683f7a4SShri Abhyankar 0, 2890bbead8a2SBarry Smith 0, 2891bbead8a2SBarry Smith 0, 2892bbead8a2SBarry Smith /*124*/0, 2893bbead8a2SBarry Smith 0, 2894bbead8a2SBarry Smith MatInvertBlockDiagonal_MPIBAIJ 28958c7482ecSBarry Smith }; 289679bdfe76SSatish Balay 2897e18c124aSSatish Balay EXTERN_C_BEGIN 28984a2ae208SSatish Balay #undef __FUNCT__ 28994a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonalBlock_MPIBAIJ" 290011bd1e4dSLisandro Dalcin PetscErrorCode MatGetDiagonalBlock_MPIBAIJ(Mat A,Mat *a) 29015ef9f2a5SBarry Smith { 29025ef9f2a5SBarry Smith PetscFunctionBegin; 29035ef9f2a5SBarry Smith *a = ((Mat_MPIBAIJ *)A->data)->A; 29045ef9f2a5SBarry Smith PetscFunctionReturn(0); 29055ef9f2a5SBarry Smith } 2906e18c124aSSatish Balay EXTERN_C_END 290779bdfe76SSatish Balay 2908273d9f13SBarry Smith EXTERN_C_BEGIN 29097087cfbeSBarry Smith extern PetscErrorCode MatConvert_MPIBAIJ_MPISBAIJ(Mat, MatType,MatReuse,Mat*); 2910d94109b8SHong Zhang EXTERN_C_END 2911d94109b8SHong Zhang 2912b8d659d7SLisandro Dalcin EXTERN_C_BEGIN 2913aac34f13SBarry Smith #undef __FUNCT__ 2914aac34f13SBarry Smith #define __FUNCT__ "MatMPIBAIJSetPreallocationCSR_MPIBAIJ" 2915cf12db73SBarry Smith PetscErrorCode MatMPIBAIJSetPreallocationCSR_MPIBAIJ(Mat B,PetscInt bs,const PetscInt ii[],const PetscInt jj[],const PetscScalar V[]) 2916aac34f13SBarry Smith { 2917b8d659d7SLisandro Dalcin PetscInt m,rstart,cstart,cend; 2918b8d659d7SLisandro Dalcin PetscInt i,j,d,nz,nz_max=0,*d_nnz=0,*o_nnz=0; 2919b8d659d7SLisandro Dalcin const PetscInt *JJ=0; 2920b8d659d7SLisandro Dalcin PetscScalar *values=0; 2921aac34f13SBarry Smith PetscErrorCode ierr; 2922aac34f13SBarry Smith 2923aac34f13SBarry Smith PetscFunctionBegin; 2924b8d659d7SLisandro Dalcin 292565e19b50SBarry Smith if (bs < 1) SETERRQ1(((PetscObject)B)->comm,PETSC_ERR_ARG_OUTOFRANGE,"Invalid block size specified, must be positive but it is %D",bs); 292626283091SBarry Smith ierr = PetscLayoutSetBlockSize(B->rmap,bs);CHKERRQ(ierr); 292726283091SBarry Smith ierr = PetscLayoutSetBlockSize(B->cmap,bs);CHKERRQ(ierr); 292826283091SBarry Smith ierr = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr); 292926283091SBarry Smith ierr = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr); 2930d0f46423SBarry Smith m = B->rmap->n/bs; 2931d0f46423SBarry Smith rstart = B->rmap->rstart/bs; 2932d0f46423SBarry Smith cstart = B->cmap->rstart/bs; 2933d0f46423SBarry Smith cend = B->cmap->rend/bs; 2934b8d659d7SLisandro Dalcin 2935e32f2f54SBarry Smith if (ii[0]) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"ii[0] must be 0 but it is %D",ii[0]); 2936fca92195SBarry Smith ierr = PetscMalloc2(m,PetscInt,&d_nnz,m,PetscInt,&o_nnz);CHKERRQ(ierr); 2937aac34f13SBarry Smith for (i=0; i<m; i++) { 2938cf12db73SBarry Smith nz = ii[i+1] - ii[i]; 2939e32f2f54SBarry Smith if (nz < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Local row %D has a negative number of columns %D",i,nz); 2940b8d659d7SLisandro Dalcin nz_max = PetscMax(nz_max,nz); 2941cf12db73SBarry Smith JJ = jj + ii[i]; 2942b8d659d7SLisandro Dalcin for (j=0; j<nz; j++) { 2943aac34f13SBarry Smith if (*JJ >= cstart) break; 2944aac34f13SBarry Smith JJ++; 2945aac34f13SBarry Smith } 2946aac34f13SBarry Smith d = 0; 2947b8d659d7SLisandro Dalcin for (; j<nz; j++) { 2948aac34f13SBarry Smith if (*JJ++ >= cend) break; 2949aac34f13SBarry Smith d++; 2950aac34f13SBarry Smith } 2951aac34f13SBarry Smith d_nnz[i] = d; 2952b8d659d7SLisandro Dalcin o_nnz[i] = nz - d; 2953aac34f13SBarry Smith } 2954aac34f13SBarry Smith ierr = MatMPIBAIJSetPreallocation(B,bs,0,d_nnz,0,o_nnz);CHKERRQ(ierr); 2955fca92195SBarry Smith ierr = PetscFree2(d_nnz,o_nnz);CHKERRQ(ierr); 2956aac34f13SBarry Smith 2957b8d659d7SLisandro Dalcin values = (PetscScalar*)V; 2958b8d659d7SLisandro Dalcin if (!values) { 2959fca92195SBarry Smith ierr = PetscMalloc(bs*bs*nz_max*sizeof(PetscScalar),&values);CHKERRQ(ierr); 2960b8d659d7SLisandro Dalcin ierr = PetscMemzero(values,bs*bs*nz_max*sizeof(PetscScalar));CHKERRQ(ierr); 2961b8d659d7SLisandro Dalcin } 2962b8d659d7SLisandro Dalcin for (i=0; i<m; i++) { 2963b8d659d7SLisandro Dalcin PetscInt row = i + rstart; 2964cf12db73SBarry Smith PetscInt ncols = ii[i+1] - ii[i]; 2965cf12db73SBarry Smith const PetscInt *icols = jj + ii[i]; 2966cf12db73SBarry Smith const PetscScalar *svals = values + (V ? (bs*bs*ii[i]) : 0); 2967b8d659d7SLisandro Dalcin ierr = MatSetValuesBlocked_MPIBAIJ(B,1,&row,ncols,icols,svals,INSERT_VALUES);CHKERRQ(ierr); 2968aac34f13SBarry Smith } 2969aac34f13SBarry Smith 2970b8d659d7SLisandro Dalcin if (!V) { ierr = PetscFree(values);CHKERRQ(ierr); } 2971aac34f13SBarry Smith ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 2972aac34f13SBarry Smith ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 29737827cd58SJed Brown ierr = MatSetOption(B,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_TRUE);CHKERRQ(ierr); 2974aac34f13SBarry Smith PetscFunctionReturn(0); 2975aac34f13SBarry Smith } 2976b8d659d7SLisandro Dalcin EXTERN_C_END 2977aac34f13SBarry Smith 2978aac34f13SBarry Smith #undef __FUNCT__ 2979aac34f13SBarry Smith #define __FUNCT__ "MatMPIBAIJSetPreallocationCSR" 2980aac34f13SBarry Smith /*@C 2981dfb205c3SBarry Smith MatMPIBAIJSetPreallocationCSR - Allocates memory for a sparse parallel matrix in BAIJ format 2982aac34f13SBarry Smith (the default parallel PETSc format). 2983aac34f13SBarry Smith 2984aac34f13SBarry Smith Collective on MPI_Comm 2985aac34f13SBarry Smith 2986aac34f13SBarry Smith Input Parameters: 2987aac34f13SBarry Smith + A - the matrix 2988dfb205c3SBarry Smith . bs - the block size 2989aac34f13SBarry Smith . i - the indices into j for the start of each local row (starts with zero) 2990aac34f13SBarry Smith . j - the column indices for each local row (starts with zero) these must be sorted for each row 2991aac34f13SBarry Smith - v - optional values in the matrix 2992aac34f13SBarry Smith 2993aac34f13SBarry Smith Level: developer 2994aac34f13SBarry Smith 2995aac34f13SBarry Smith .keywords: matrix, aij, compressed row, sparse, parallel 2996aac34f13SBarry Smith 2997aac34f13SBarry Smith .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatMPIBAIJSetPreallocation(), MatCreateMPIAIJ(), MPIAIJ 2998aac34f13SBarry Smith @*/ 29997087cfbeSBarry Smith PetscErrorCode MatMPIBAIJSetPreallocationCSR(Mat B,PetscInt bs,const PetscInt i[],const PetscInt j[], const PetscScalar v[]) 3000aac34f13SBarry Smith { 30014ac538c5SBarry Smith PetscErrorCode ierr; 3002aac34f13SBarry Smith 3003aac34f13SBarry Smith PetscFunctionBegin; 30046ba663aaSJed Brown PetscValidHeaderSpecific(B,MAT_CLASSID,1); 30056ba663aaSJed Brown PetscValidType(B,1); 30066ba663aaSJed Brown PetscValidLogicalCollectiveInt(B,bs,2); 30074ac538c5SBarry Smith ierr = PetscTryMethod(B,"MatMPIBAIJSetPreallocationCSR_C",(Mat,PetscInt,const PetscInt[],const PetscInt[],const PetscScalar[]),(B,bs,i,j,v));CHKERRQ(ierr); 3008aac34f13SBarry Smith PetscFunctionReturn(0); 3009aac34f13SBarry Smith } 3010aac34f13SBarry Smith 3011d94109b8SHong Zhang EXTERN_C_BEGIN 30124a2ae208SSatish Balay #undef __FUNCT__ 3013a23d5eceSKris Buschelman #define __FUNCT__ "MatMPIBAIJSetPreallocation_MPIBAIJ" 30147087cfbeSBarry Smith PetscErrorCode MatMPIBAIJSetPreallocation_MPIBAIJ(Mat B,PetscInt bs,PetscInt d_nz,PetscInt *d_nnz,PetscInt o_nz,PetscInt *o_nnz) 3015a23d5eceSKris Buschelman { 3016a23d5eceSKris Buschelman Mat_MPIBAIJ *b; 3017dfbe8321SBarry Smith PetscErrorCode ierr; 3018db4efbfdSBarry Smith PetscInt i, newbs = PetscAbs(bs); 30192576faa2SJed Brown PetscBool d_realalloc = PETSC_FALSE,o_realalloc = PETSC_FALSE; 3020a23d5eceSKris Buschelman 3021a23d5eceSKris Buschelman PetscFunctionBegin; 30222576faa2SJed Brown if (d_nz >= 0 || d_nnz) d_realalloc = PETSC_TRUE; 30232576faa2SJed Brown if (o_nz >= 0 || o_nnz) o_realalloc = PETSC_TRUE; 3024db4efbfdSBarry Smith if (bs < 0) { 30257adad957SLisandro Dalcin ierr = PetscOptionsBegin(((PetscObject)B)->comm,((PetscObject)B)->prefix,"Options for MPIBAIJ matrix","Mat");CHKERRQ(ierr); 3026db4efbfdSBarry Smith ierr = PetscOptionsInt("-mat_block_size","Set the blocksize used to store the matrix","MatMPIBAIJSetPreallocation",newbs,&newbs,PETSC_NULL);CHKERRQ(ierr); 30278c07d4e3SBarry Smith ierr = PetscOptionsEnd();CHKERRQ(ierr); 3028db4efbfdSBarry Smith bs = PetscAbs(bs); 3029db4efbfdSBarry Smith } 3030e7e72b3dSBarry Smith if ((d_nnz || o_nnz) && newbs != bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Cannot change blocksize from command line if setting d_nnz or o_nnz"); 3031db4efbfdSBarry Smith bs = newbs; 3032db4efbfdSBarry Smith 3033a23d5eceSKris Buschelman 3034e7e72b3dSBarry Smith if (bs < 1) SETERRQ(((PetscObject)B)->comm,PETSC_ERR_ARG_OUTOFRANGE,"Invalid block size specified, must be positive"); 3035a23d5eceSKris Buschelman if (d_nz == PETSC_DEFAULT || d_nz == PETSC_DECIDE) d_nz = 5; 3036a23d5eceSKris Buschelman if (o_nz == PETSC_DEFAULT || o_nz == PETSC_DECIDE) o_nz = 2; 3037e32f2f54SBarry Smith if (d_nz < 0) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"d_nz cannot be less than 0: value %D",d_nz); 3038e32f2f54SBarry Smith if (o_nz < 0) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"o_nz cannot be less than 0: value %D",o_nz); 3039899cda47SBarry Smith 304026283091SBarry Smith ierr = PetscLayoutSetBlockSize(B->rmap,bs);CHKERRQ(ierr); 304126283091SBarry Smith ierr = PetscLayoutSetBlockSize(B->cmap,bs);CHKERRQ(ierr); 304226283091SBarry Smith ierr = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr); 304326283091SBarry Smith ierr = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr); 3044899cda47SBarry Smith 3045a23d5eceSKris Buschelman if (d_nnz) { 3046d0f46423SBarry Smith for (i=0; i<B->rmap->n/bs; i++) { 3047e32f2f54SBarry Smith if (d_nnz[i] < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"d_nnz cannot be less than -1: local row %D value %D",i,d_nnz[i]); 3048a23d5eceSKris Buschelman } 3049a23d5eceSKris Buschelman } 3050a23d5eceSKris Buschelman if (o_nnz) { 3051d0f46423SBarry Smith for (i=0; i<B->rmap->n/bs; i++) { 3052e32f2f54SBarry Smith if (o_nnz[i] < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"o_nnz cannot be less than -1: local row %D value %D",i,o_nnz[i]); 3053a23d5eceSKris Buschelman } 3054a23d5eceSKris Buschelman } 3055a23d5eceSKris Buschelman 3056a23d5eceSKris Buschelman b = (Mat_MPIBAIJ*)B->data; 3057a23d5eceSKris Buschelman b->bs2 = bs*bs; 3058d0f46423SBarry Smith b->mbs = B->rmap->n/bs; 3059d0f46423SBarry Smith b->nbs = B->cmap->n/bs; 3060d0f46423SBarry Smith b->Mbs = B->rmap->N/bs; 3061d0f46423SBarry Smith b->Nbs = B->cmap->N/bs; 3062a23d5eceSKris Buschelman 3063a23d5eceSKris Buschelman for (i=0; i<=b->size; i++) { 3064d0f46423SBarry Smith b->rangebs[i] = B->rmap->range[i]/bs; 3065a23d5eceSKris Buschelman } 3066d0f46423SBarry Smith b->rstartbs = B->rmap->rstart/bs; 3067d0f46423SBarry Smith b->rendbs = B->rmap->rend/bs; 3068d0f46423SBarry Smith b->cstartbs = B->cmap->rstart/bs; 3069d0f46423SBarry Smith b->cendbs = B->cmap->rend/bs; 3070a23d5eceSKris Buschelman 3071526dfc15SBarry Smith if (!B->preallocated) { 3072f69a0ea3SMatthew Knepley ierr = MatCreate(PETSC_COMM_SELF,&b->A);CHKERRQ(ierr); 3073d0f46423SBarry Smith ierr = MatSetSizes(b->A,B->rmap->n,B->cmap->n,B->rmap->n,B->cmap->n);CHKERRQ(ierr); 30749c097c71SKris Buschelman ierr = MatSetType(b->A,MATSEQBAIJ);CHKERRQ(ierr); 307552e6d16bSBarry Smith ierr = PetscLogObjectParent(B,b->A);CHKERRQ(ierr); 3076f69a0ea3SMatthew Knepley ierr = MatCreate(PETSC_COMM_SELF,&b->B);CHKERRQ(ierr); 3077d0f46423SBarry Smith ierr = MatSetSizes(b->B,B->rmap->n,B->cmap->N,B->rmap->n,B->cmap->N);CHKERRQ(ierr); 30789c097c71SKris Buschelman ierr = MatSetType(b->B,MATSEQBAIJ);CHKERRQ(ierr); 307952e6d16bSBarry Smith ierr = PetscLogObjectParent(B,b->B);CHKERRQ(ierr); 30807adad957SLisandro Dalcin ierr = MatStashCreate_Private(((PetscObject)B)->comm,bs,&B->bstash);CHKERRQ(ierr); 3081526dfc15SBarry Smith } 3082a23d5eceSKris Buschelman 3083526dfc15SBarry Smith ierr = MatSeqBAIJSetPreallocation(b->A,bs,d_nz,d_nnz);CHKERRQ(ierr); 3084526dfc15SBarry Smith ierr = MatSeqBAIJSetPreallocation(b->B,bs,o_nz,o_nnz);CHKERRQ(ierr); 30852576faa2SJed Brown /* Do not error if the user did not give real preallocation information. Ugly because this would overwrite a previous user call to MatSetOption(). */ 30862576faa2SJed Brown if (!d_realalloc) {ierr = MatSetOption(b->A,MAT_NEW_NONZERO_ALLOCATION_ERR,PETSC_FALSE);CHKERRQ(ierr);} 30872576faa2SJed Brown if (!o_realalloc) {ierr = MatSetOption(b->B,MAT_NEW_NONZERO_ALLOCATION_ERR,PETSC_FALSE);CHKERRQ(ierr);} 3088526dfc15SBarry Smith B->preallocated = PETSC_TRUE; 3089a23d5eceSKris Buschelman PetscFunctionReturn(0); 3090a23d5eceSKris Buschelman } 3091a23d5eceSKris Buschelman EXTERN_C_END 3092a23d5eceSKris Buschelman 3093a23d5eceSKris Buschelman EXTERN_C_BEGIN 30947087cfbeSBarry Smith extern PetscErrorCode MatDiagonalScaleLocal_MPIBAIJ(Mat,Vec); 30957087cfbeSBarry Smith extern PetscErrorCode MatSetHashTableFactor_MPIBAIJ(Mat,PetscReal); 309692b32695SKris Buschelman EXTERN_C_END 30975bf65638SKris Buschelman 309882094794SBarry Smith 309982094794SBarry Smith EXTERN_C_BEGIN 310082094794SBarry Smith #undef __FUNCT__ 310182094794SBarry Smith #define __FUNCT__ "MatConvert_MPIBAIJ_MPIAdj" 31027087cfbeSBarry Smith PetscErrorCode MatConvert_MPIBAIJ_MPIAdj(Mat B, const MatType newtype,MatReuse reuse,Mat *adj) 310382094794SBarry Smith { 310482094794SBarry Smith Mat_MPIBAIJ *b = (Mat_MPIBAIJ*)B->data; 310582094794SBarry Smith PetscErrorCode ierr; 310682094794SBarry Smith Mat_SeqBAIJ *d = (Mat_SeqBAIJ*) b->A->data,*o = (Mat_SeqBAIJ*) b->B->data; 310782094794SBarry Smith PetscInt M = B->rmap->n/B->rmap->bs,i,*ii,*jj,cnt,j,k,rstart = B->rmap->rstart/B->rmap->bs; 310882094794SBarry Smith const PetscInt *id = d->i, *jd = d->j, *io = o->i, *jo = o->j, *garray = b->garray; 310982094794SBarry Smith 311082094794SBarry Smith PetscFunctionBegin; 311182094794SBarry Smith ierr = PetscMalloc((M+1)*sizeof(PetscInt),&ii);CHKERRQ(ierr); 311282094794SBarry Smith ii[0] = 0; 311382094794SBarry Smith CHKMEMQ; 311482094794SBarry Smith for (i=0; i<M; i++) { 3115e32f2f54SBarry Smith if ((id[i+1] - id[i]) < 0) SETERRQ3(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Indices wrong %D %D %D",i,id[i],id[i+1]); 3116e32f2f54SBarry Smith if ((io[i+1] - io[i]) < 0) SETERRQ3(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Indices wrong %D %D %D",i,io[i],io[i+1]); 311782094794SBarry Smith ii[i+1] = ii[i] + id[i+1] - id[i] + io[i+1] - io[i]; 311882094794SBarry Smith /* remove one from count of matrix has diagonal */ 311982094794SBarry Smith for (j=id[i]; j<id[i+1]; j++) { 312082094794SBarry Smith if (jd[j] == i) {ii[i+1]--;break;} 312182094794SBarry Smith } 312282094794SBarry Smith CHKMEMQ; 312382094794SBarry Smith } 312482094794SBarry Smith ierr = PetscMalloc(ii[M]*sizeof(PetscInt),&jj);CHKERRQ(ierr); 312582094794SBarry Smith cnt = 0; 312682094794SBarry Smith for (i=0; i<M; i++) { 312782094794SBarry Smith for (j=io[i]; j<io[i+1]; j++) { 312882094794SBarry Smith if (garray[jo[j]] > rstart) break; 312982094794SBarry Smith jj[cnt++] = garray[jo[j]]; 313082094794SBarry Smith CHKMEMQ; 313182094794SBarry Smith } 313282094794SBarry Smith for (k=id[i]; k<id[i+1]; k++) { 313382094794SBarry Smith if (jd[k] != i) { 313482094794SBarry Smith jj[cnt++] = rstart + jd[k]; 313582094794SBarry Smith CHKMEMQ; 313682094794SBarry Smith } 313782094794SBarry Smith } 313882094794SBarry Smith for (;j<io[i+1]; j++) { 313982094794SBarry Smith jj[cnt++] = garray[jo[j]]; 314082094794SBarry Smith CHKMEMQ; 314182094794SBarry Smith } 314282094794SBarry Smith } 314382094794SBarry Smith ierr = MatCreateMPIAdj(((PetscObject)B)->comm,M,B->cmap->N/B->rmap->bs,ii,jj,PETSC_NULL,adj);CHKERRQ(ierr); 314482094794SBarry Smith PetscFunctionReturn(0); 314582094794SBarry Smith } 3146dbf0e21dSBarry Smith EXTERN_C_END 314782094794SBarry Smith 3148c6db04a5SJed Brown #include <../src/mat/impls/aij/mpi/mpiaij.h> 31491e66c38aSShri Abhyankar EXTERN_C_BEGIN 31507087cfbeSBarry Smith PetscErrorCode MatConvert_SeqBAIJ_SeqAIJ(Mat,const MatType,MatReuse,Mat*); 31511e66c38aSShri Abhyankar EXTERN_C_END 315262471d69SBarry Smith 315362471d69SBarry Smith EXTERN_C_BEGIN 315462471d69SBarry Smith #undef __FUNCT__ 315562471d69SBarry Smith #define __FUNCT__ "MatConvert_MPIBAIJ_MPIAIJ" 31567087cfbeSBarry Smith PetscErrorCode MatConvert_MPIBAIJ_MPIAIJ(Mat A,const MatType newtype,MatReuse reuse,Mat *newmat) 315762471d69SBarry Smith { 315862471d69SBarry Smith PetscErrorCode ierr; 315962471d69SBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 316062471d69SBarry Smith Mat B; 316185a69837SSatish Balay Mat_MPIAIJ *b; 316262471d69SBarry Smith 316362471d69SBarry Smith PetscFunctionBegin; 316462471d69SBarry Smith if (!A->assembled) SETERRQ(((PetscObject)A)->comm,PETSC_ERR_SUP,"Matrix must be assembled"); 316562471d69SBarry Smith 316662471d69SBarry Smith ierr = MatCreate(((PetscObject)A)->comm,&B);CHKERRQ(ierr); 316762471d69SBarry Smith ierr = MatSetSizes(B,A->rmap->n,A->cmap->n,A->rmap->N,A->cmap->N);CHKERRQ(ierr); 31686d0a4a0eSHong Zhang ierr = MatSetType(B,MATMPIAIJ);CHKERRQ(ierr); 31696d0a4a0eSHong Zhang ierr = MatSeqAIJSetPreallocation(B,0,PETSC_NULL);CHKERRQ(ierr); 317062471d69SBarry Smith ierr = MatMPIAIJSetPreallocation(B,0,PETSC_NULL,0,PETSC_NULL);CHKERRQ(ierr); 317162471d69SBarry Smith b = (Mat_MPIAIJ*) B->data; 317262471d69SBarry Smith 31736bf464f9SBarry Smith ierr = MatDestroy(&b->A);CHKERRQ(ierr); 31746bf464f9SBarry Smith ierr = MatDestroy(&b->B);CHKERRQ(ierr); 31756a719282SBarry Smith ierr = DisAssemble_MPIBAIJ(A);CHKERRQ(ierr); 317662471d69SBarry Smith ierr = MatConvert_SeqBAIJ_SeqAIJ(a->A, MATSEQAIJ, MAT_INITIAL_MATRIX, &b->A);CHKERRQ(ierr); 317762471d69SBarry Smith ierr = MatConvert_SeqBAIJ_SeqAIJ(a->B, MATSEQAIJ, MAT_INITIAL_MATRIX, &b->B);CHKERRQ(ierr); 317862471d69SBarry Smith ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 317962471d69SBarry Smith ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 31806a719282SBarry Smith ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 31816a719282SBarry Smith ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 318262471d69SBarry Smith if (reuse == MAT_REUSE_MATRIX) { 318362471d69SBarry Smith ierr = MatHeaderReplace(A,B);CHKERRQ(ierr); 318462471d69SBarry Smith } else { 318562471d69SBarry Smith *newmat = B; 318662471d69SBarry Smith } 318762471d69SBarry Smith PetscFunctionReturn(0); 318862471d69SBarry Smith } 318962471d69SBarry Smith EXTERN_C_END 319062471d69SBarry Smith 3191450b117fSShri Abhyankar EXTERN_C_BEGIN 3192450b117fSShri Abhyankar #if defined(PETSC_HAVE_MUMPS) 3193bccb9932SShri Abhyankar extern PetscErrorCode MatGetFactor_baij_mumps(Mat,MatFactorType,Mat*); 3194450b117fSShri Abhyankar #endif 3195450b117fSShri Abhyankar EXTERN_C_END 3196450b117fSShri Abhyankar 31970bad9183SKris Buschelman /*MC 3198fafad747SKris Buschelman MATMPIBAIJ - MATMPIBAIJ = "mpibaij" - A matrix type to be used for distributed block sparse matrices. 31990bad9183SKris Buschelman 32000bad9183SKris Buschelman Options Database Keys: 32018c07d4e3SBarry Smith + -mat_type mpibaij - sets the matrix type to "mpibaij" during a call to MatSetFromOptions() 32028c07d4e3SBarry Smith . -mat_block_size <bs> - set the blocksize used to store the matrix 32038c07d4e3SBarry Smith - -mat_use_hash_table <fact> 32040bad9183SKris Buschelman 32050bad9183SKris Buschelman Level: beginner 32060bad9183SKris Buschelman 32070bad9183SKris Buschelman .seealso: MatCreateMPIBAIJ 32080bad9183SKris Buschelman M*/ 32090bad9183SKris Buschelman 321092b32695SKris Buschelman EXTERN_C_BEGIN 3211c0cdd4a1SDahai Guo extern PetscErrorCode MatConvert_MPIBAIJ_MPIBSTRM(Mat,const MatType,MatReuse,Mat*); 3212c0cdd4a1SDahai Guo EXTERN_C_END 3213c0cdd4a1SDahai Guo 3214c0cdd4a1SDahai Guo EXTERN_C_BEGIN 3215a23d5eceSKris Buschelman #undef __FUNCT__ 32164a2ae208SSatish Balay #define __FUNCT__ "MatCreate_MPIBAIJ" 32177087cfbeSBarry Smith PetscErrorCode MatCreate_MPIBAIJ(Mat B) 3218273d9f13SBarry Smith { 3219273d9f13SBarry Smith Mat_MPIBAIJ *b; 3220dfbe8321SBarry Smith PetscErrorCode ierr; 3221ace3abfcSBarry Smith PetscBool flg; 3222273d9f13SBarry Smith 3223273d9f13SBarry Smith PetscFunctionBegin; 322438f2d2fdSLisandro Dalcin ierr = PetscNewLog(B,Mat_MPIBAIJ,&b);CHKERRQ(ierr); 322582502324SSatish Balay B->data = (void*)b; 322682502324SSatish Balay 3227273d9f13SBarry Smith ierr = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr); 3228273d9f13SBarry Smith B->assembled = PETSC_FALSE; 3229273d9f13SBarry Smith 3230273d9f13SBarry Smith B->insertmode = NOT_SET_VALUES; 32317adad957SLisandro Dalcin ierr = MPI_Comm_rank(((PetscObject)B)->comm,&b->rank);CHKERRQ(ierr); 32327adad957SLisandro Dalcin ierr = MPI_Comm_size(((PetscObject)B)->comm,&b->size);CHKERRQ(ierr); 3233273d9f13SBarry Smith 3234273d9f13SBarry Smith /* build local table of row and column ownerships */ 3235899cda47SBarry Smith ierr = PetscMalloc((b->size+1)*sizeof(PetscInt),&b->rangebs);CHKERRQ(ierr); 3236273d9f13SBarry Smith 3237273d9f13SBarry Smith /* build cache for off array entries formed */ 32387adad957SLisandro Dalcin ierr = MatStashCreate_Private(((PetscObject)B)->comm,1,&B->stash);CHKERRQ(ierr); 3239273d9f13SBarry Smith b->donotstash = PETSC_FALSE; 3240273d9f13SBarry Smith b->colmap = PETSC_NULL; 3241273d9f13SBarry Smith b->garray = PETSC_NULL; 3242273d9f13SBarry Smith b->roworiented = PETSC_TRUE; 3243273d9f13SBarry Smith 3244273d9f13SBarry Smith /* stuff used in block assembly */ 3245273d9f13SBarry Smith b->barray = 0; 3246273d9f13SBarry Smith 3247273d9f13SBarry Smith /* stuff used for matrix vector multiply */ 3248273d9f13SBarry Smith b->lvec = 0; 3249273d9f13SBarry Smith b->Mvctx = 0; 3250273d9f13SBarry Smith 3251273d9f13SBarry Smith /* stuff for MatGetRow() */ 3252273d9f13SBarry Smith b->rowindices = 0; 3253273d9f13SBarry Smith b->rowvalues = 0; 3254273d9f13SBarry Smith b->getrowactive = PETSC_FALSE; 3255273d9f13SBarry Smith 3256273d9f13SBarry Smith /* hash table stuff */ 3257273d9f13SBarry Smith b->ht = 0; 3258273d9f13SBarry Smith b->hd = 0; 3259273d9f13SBarry Smith b->ht_size = 0; 3260273d9f13SBarry Smith b->ht_flag = PETSC_FALSE; 3261273d9f13SBarry Smith b->ht_fact = 0; 3262273d9f13SBarry Smith b->ht_total_ct = 0; 3263273d9f13SBarry Smith b->ht_insert_ct = 0; 3264273d9f13SBarry Smith 32657a868f3eSHong Zhang /* stuff for MatGetSubMatrices_MPIBAIJ_local() */ 32667a868f3eSHong Zhang b->ijonly = PETSC_FALSE; 32677a868f3eSHong Zhang 32687adad957SLisandro Dalcin ierr = PetscOptionsBegin(((PetscObject)B)->comm,PETSC_NULL,"Options for loading MPIBAIJ matrix 1","Mat");CHKERRQ(ierr); 3269acfcf0e5SJed Brown ierr = PetscOptionsBool("-mat_use_hash_table","Use hash table to save memory in constructing matrix","MatSetOption",PETSC_FALSE,&flg,PETSC_NULL);CHKERRQ(ierr); 3270273d9f13SBarry Smith if (flg) { 3271f6275e2eSBarry Smith PetscReal fact = 1.39; 32724e0d8c25SBarry Smith ierr = MatSetOption(B,MAT_USE_HASH_TABLE,PETSC_TRUE);CHKERRQ(ierr); 32738c07d4e3SBarry Smith ierr = PetscOptionsReal("-mat_use_hash_table","Use hash table factor","MatMPIBAIJSetHashTableFactor",fact,&fact,PETSC_NULL);CHKERRQ(ierr); 3274273d9f13SBarry Smith if (fact <= 1.0) fact = 1.39; 3275273d9f13SBarry Smith ierr = MatMPIBAIJSetHashTableFactor(B,fact);CHKERRQ(ierr); 32761e2582c4SBarry Smith ierr = PetscInfo1(B,"Hash table Factor used %5.2f\n",fact);CHKERRQ(ierr); 3277273d9f13SBarry Smith } 32788c07d4e3SBarry Smith ierr = PetscOptionsEnd();CHKERRQ(ierr); 32798c07d4e3SBarry Smith 3280450b117fSShri Abhyankar #if defined(PETSC_HAVE_MUMPS) 3281bccb9932SShri Abhyankar ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetFactor_mumps_C", "MatGetFactor_baij_mumps",MatGetFactor_baij_mumps);CHKERRQ(ierr); 3282450b117fSShri Abhyankar #endif 328382094794SBarry Smith ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatConvert_mpibaij_mpiadj_C", 328482094794SBarry Smith "MatConvert_MPIBAIJ_MPIAdj", 328582094794SBarry Smith MatConvert_MPIBAIJ_MPIAdj);CHKERRQ(ierr); 328662471d69SBarry Smith ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatConvert_mpibaij_mpiaij_C", 328762471d69SBarry Smith "MatConvert_MPIBAIJ_MPIAIJ", 328862471d69SBarry Smith MatConvert_MPIBAIJ_MPIAIJ);CHKERRQ(ierr); 3289ad5247fdSHong Zhang ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatConvert_mpibaij_mpisbaij_C", 3290ad5247fdSHong Zhang "MatConvert_MPIBAIJ_MPISBAIJ", 3291ad5247fdSHong Zhang MatConvert_MPIBAIJ_MPISBAIJ);CHKERRQ(ierr); 3292273d9f13SBarry Smith ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatStoreValues_C", 3293273d9f13SBarry Smith "MatStoreValues_MPIBAIJ", 3294273d9f13SBarry Smith MatStoreValues_MPIBAIJ);CHKERRQ(ierr); 3295273d9f13SBarry Smith ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatRetrieveValues_C", 3296273d9f13SBarry Smith "MatRetrieveValues_MPIBAIJ", 3297273d9f13SBarry Smith MatRetrieveValues_MPIBAIJ);CHKERRQ(ierr); 3298273d9f13SBarry Smith ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetDiagonalBlock_C", 3299273d9f13SBarry Smith "MatGetDiagonalBlock_MPIBAIJ", 3300273d9f13SBarry Smith MatGetDiagonalBlock_MPIBAIJ);CHKERRQ(ierr); 3301a23d5eceSKris Buschelman ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatMPIBAIJSetPreallocation_C", 3302a23d5eceSKris Buschelman "MatMPIBAIJSetPreallocation_MPIBAIJ", 3303a23d5eceSKris Buschelman MatMPIBAIJSetPreallocation_MPIBAIJ);CHKERRQ(ierr); 3304aac34f13SBarry Smith ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatMPIBAIJSetPreallocationCSR_C", 330544ec7894SLisandro Dalcin "MatMPIBAIJSetPreallocationCSR_MPIBAIJ", 3306aac34f13SBarry Smith MatMPIBAIJSetPreallocationCSR_MPIBAIJ);CHKERRQ(ierr); 330792b32695SKris Buschelman ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatDiagonalScaleLocal_C", 330892b32695SKris Buschelman "MatDiagonalScaleLocal_MPIBAIJ", 330992b32695SKris Buschelman MatDiagonalScaleLocal_MPIBAIJ);CHKERRQ(ierr); 33105bf65638SKris Buschelman ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatSetHashTableFactor_C", 33115bf65638SKris Buschelman "MatSetHashTableFactor_MPIBAIJ", 33125bf65638SKris Buschelman MatSetHashTableFactor_MPIBAIJ);CHKERRQ(ierr); 3313c0cdd4a1SDahai Guo ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatConvert_mpibaij_mpibstrm_C", 3314c0cdd4a1SDahai Guo "MatConvert_MPIBAIJ_MPIBSTRM", 3315c0cdd4a1SDahai Guo MatConvert_MPIBAIJ_MPIBSTRM);CHKERRQ(ierr); 331617667f90SBarry Smith ierr = PetscObjectChangeTypeName((PetscObject)B,MATMPIBAIJ);CHKERRQ(ierr); 3317273d9f13SBarry Smith PetscFunctionReturn(0); 3318273d9f13SBarry Smith } 3319273d9f13SBarry Smith EXTERN_C_END 3320273d9f13SBarry Smith 3321209238afSKris Buschelman /*MC 3322002d173eSKris Buschelman MATBAIJ - MATBAIJ = "baij" - A matrix type to be used for block sparse matrices. 3323209238afSKris Buschelman 3324209238afSKris Buschelman This matrix type is identical to MATSEQBAIJ when constructed with a single process communicator, 3325209238afSKris Buschelman and MATMPIBAIJ otherwise. 3326209238afSKris Buschelman 3327209238afSKris Buschelman Options Database Keys: 3328209238afSKris Buschelman . -mat_type baij - sets the matrix type to "baij" during a call to MatSetFromOptions() 3329209238afSKris Buschelman 3330209238afSKris Buschelman Level: beginner 3331209238afSKris Buschelman 3332aac34f13SBarry Smith .seealso: MatCreateMPIBAIJ(),MATSEQBAIJ,MATMPIBAIJ, MatMPIBAIJSetPreallocation(), MatMPIBAIJSetPreallocationCSR() 3333209238afSKris Buschelman M*/ 3334209238afSKris Buschelman 33354a2ae208SSatish Balay #undef __FUNCT__ 33364a2ae208SSatish Balay #define __FUNCT__ "MatMPIBAIJSetPreallocation" 3337273d9f13SBarry Smith /*@C 3338aac34f13SBarry Smith MatMPIBAIJSetPreallocation - Allocates memory for a sparse parallel matrix in block AIJ format 3339273d9f13SBarry Smith (block compressed row). For good matrix assembly performance 3340273d9f13SBarry Smith the user should preallocate the matrix storage by setting the parameters 3341273d9f13SBarry Smith d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 3342273d9f13SBarry Smith performance can be increased by more than a factor of 50. 3343273d9f13SBarry Smith 3344273d9f13SBarry Smith Collective on Mat 3345273d9f13SBarry Smith 3346273d9f13SBarry Smith Input Parameters: 3347273d9f13SBarry Smith + A - the matrix 3348273d9f13SBarry Smith . bs - size of blockk 3349273d9f13SBarry Smith . d_nz - number of block nonzeros per block row in diagonal portion of local 3350273d9f13SBarry Smith submatrix (same for all local rows) 3351273d9f13SBarry Smith . d_nnz - array containing the number of block nonzeros in the various block rows 3352273d9f13SBarry Smith of the in diagonal portion of the local (possibly different for each block 335395742e49SBarry Smith row) or PETSC_NULL. If you plan to factor the matrix you must leave room for the diagonal entry and 335495742e49SBarry Smith set it even if it is zero. 3355273d9f13SBarry Smith . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 3356273d9f13SBarry Smith submatrix (same for all local rows). 3357273d9f13SBarry Smith - o_nnz - array containing the number of nonzeros in the various block rows of the 3358273d9f13SBarry Smith off-diagonal portion of the local submatrix (possibly different for 3359273d9f13SBarry Smith each block row) or PETSC_NULL. 3360273d9f13SBarry Smith 336149a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 3362273d9f13SBarry Smith 3363273d9f13SBarry Smith Options Database Keys: 33648c07d4e3SBarry Smith + -mat_block_size - size of the blocks to use 33658c07d4e3SBarry Smith - -mat_use_hash_table <fact> 3366273d9f13SBarry Smith 3367273d9f13SBarry Smith Notes: 3368273d9f13SBarry Smith If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one processor 3369273d9f13SBarry Smith than it must be used on all processors that share the object for that argument. 3370273d9f13SBarry Smith 3371273d9f13SBarry Smith Storage Information: 3372273d9f13SBarry Smith For a square global matrix we define each processor's diagonal portion 3373273d9f13SBarry Smith to be its local rows and the corresponding columns (a square submatrix); 3374273d9f13SBarry Smith each processor's off-diagonal portion encompasses the remainder of the 3375273d9f13SBarry Smith local matrix (a rectangular submatrix). 3376273d9f13SBarry Smith 3377273d9f13SBarry Smith The user can specify preallocated storage for the diagonal part of 3378273d9f13SBarry Smith the local submatrix with either d_nz or d_nnz (not both). Set 3379273d9f13SBarry Smith d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic 3380273d9f13SBarry Smith memory allocation. Likewise, specify preallocated storage for the 3381273d9f13SBarry Smith off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 3382273d9f13SBarry Smith 3383273d9f13SBarry Smith Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 3384273d9f13SBarry Smith the figure below we depict these three local rows and all columns (0-11). 3385273d9f13SBarry Smith 3386273d9f13SBarry Smith .vb 3387273d9f13SBarry Smith 0 1 2 3 4 5 6 7 8 9 10 11 3388273d9f13SBarry Smith ------------------- 3389273d9f13SBarry Smith row 3 | o o o d d d o o o o o o 3390273d9f13SBarry Smith row 4 | o o o d d d o o o o o o 3391273d9f13SBarry Smith row 5 | o o o d d d o o o o o o 3392273d9f13SBarry Smith ------------------- 3393273d9f13SBarry Smith .ve 3394273d9f13SBarry Smith 3395273d9f13SBarry Smith Thus, any entries in the d locations are stored in the d (diagonal) 3396273d9f13SBarry Smith submatrix, and any entries in the o locations are stored in the 3397273d9f13SBarry Smith o (off-diagonal) submatrix. Note that the d and the o submatrices are 3398273d9f13SBarry Smith stored simply in the MATSEQBAIJ format for compressed row storage. 3399273d9f13SBarry Smith 3400273d9f13SBarry Smith Now d_nz should indicate the number of block nonzeros per row in the d matrix, 3401273d9f13SBarry Smith and o_nz should indicate the number of block nonzeros per row in the o matrix. 3402273d9f13SBarry Smith In general, for PDE problems in which most nonzeros are near the diagonal, 3403273d9f13SBarry Smith one expects d_nz >> o_nz. For large problems you MUST preallocate memory 3404273d9f13SBarry Smith or you will get TERRIBLE performance; see the users' manual chapter on 3405273d9f13SBarry Smith matrices. 3406273d9f13SBarry Smith 3407aa95bbe8SBarry Smith You can call MatGetInfo() to get information on how effective the preallocation was; 3408aa95bbe8SBarry Smith for example the fields mallocs,nz_allocated,nz_used,nz_unneeded; 3409aa95bbe8SBarry Smith You can also run with the option -info and look for messages with the string 3410aa95bbe8SBarry Smith malloc in them to see if additional memory allocation was needed. 3411aa95bbe8SBarry Smith 3412273d9f13SBarry Smith Level: intermediate 3413273d9f13SBarry Smith 3414273d9f13SBarry Smith .keywords: matrix, block, aij, compressed row, sparse, parallel 3415273d9f13SBarry Smith 3416aac34f13SBarry Smith .seealso: MatCreate(), MatCreateSeqBAIJ(), MatSetValues(), MatCreateMPIBAIJ(), MatMPIBAIJSetPreallocationCSR() 3417273d9f13SBarry Smith @*/ 34187087cfbeSBarry Smith PetscErrorCode MatMPIBAIJSetPreallocation(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[]) 3419273d9f13SBarry Smith { 34204ac538c5SBarry Smith PetscErrorCode ierr; 3421273d9f13SBarry Smith 3422273d9f13SBarry Smith PetscFunctionBegin; 34236ba663aaSJed Brown PetscValidHeaderSpecific(B,MAT_CLASSID,1); 34246ba663aaSJed Brown PetscValidType(B,1); 34256ba663aaSJed Brown PetscValidLogicalCollectiveInt(B,bs,2); 34264ac538c5SBarry Smith ierr = PetscTryMethod(B,"MatMPIBAIJSetPreallocation_C",(Mat,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[]),(B,bs,d_nz,d_nnz,o_nz,o_nnz));CHKERRQ(ierr); 3427273d9f13SBarry Smith PetscFunctionReturn(0); 3428273d9f13SBarry Smith } 3429273d9f13SBarry Smith 34304a2ae208SSatish Balay #undef __FUNCT__ 34314a2ae208SSatish Balay #define __FUNCT__ "MatCreateMPIBAIJ" 343279bdfe76SSatish Balay /*@C 343379bdfe76SSatish Balay MatCreateMPIBAIJ - Creates a sparse parallel matrix in block AIJ format 343479bdfe76SSatish Balay (block compressed row). For good matrix assembly performance 343579bdfe76SSatish Balay the user should preallocate the matrix storage by setting the parameters 343679bdfe76SSatish Balay d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 343779bdfe76SSatish Balay performance can be increased by more than a factor of 50. 343879bdfe76SSatish Balay 3439db81eaa0SLois Curfman McInnes Collective on MPI_Comm 3440db81eaa0SLois Curfman McInnes 344179bdfe76SSatish Balay Input Parameters: 3442db81eaa0SLois Curfman McInnes + comm - MPI communicator 344379bdfe76SSatish Balay . bs - size of blockk 344479bdfe76SSatish Balay . m - number of local rows (or PETSC_DECIDE to have calculated if M is given) 344592e8d321SLois Curfman McInnes This value should be the same as the local size used in creating the 344692e8d321SLois Curfman McInnes y vector for the matrix-vector product y = Ax. 344792e8d321SLois Curfman McInnes . n - number of local columns (or PETSC_DECIDE to have calculated if N is given) 344892e8d321SLois Curfman McInnes This value should be the same as the local size used in creating the 344992e8d321SLois Curfman McInnes x vector for the matrix-vector product y = Ax. 3450be79a94dSBarry Smith . M - number of global rows (or PETSC_DETERMINE to have calculated if m is given) 3451be79a94dSBarry Smith . N - number of global columns (or PETSC_DETERMINE to have calculated if n is given) 345247a75d0bSBarry Smith . d_nz - number of nonzero blocks per block row in diagonal portion of local 345379bdfe76SSatish Balay submatrix (same for all local rows) 345447a75d0bSBarry Smith . d_nnz - array containing the number of nonzero blocks in the various block rows 345592e8d321SLois Curfman McInnes of the in diagonal portion of the local (possibly different for each block 345695742e49SBarry Smith row) or PETSC_NULL. If you plan to factor the matrix you must leave room for the diagonal entry 345795742e49SBarry Smith and set it even if it is zero. 345847a75d0bSBarry Smith . o_nz - number of nonzero blocks per block row in the off-diagonal portion of local 345979bdfe76SSatish Balay submatrix (same for all local rows). 346047a75d0bSBarry Smith - o_nnz - array containing the number of nonzero blocks in the various block rows of the 346192e8d321SLois Curfman McInnes off-diagonal portion of the local submatrix (possibly different for 346292e8d321SLois Curfman McInnes each block row) or PETSC_NULL. 346379bdfe76SSatish Balay 346479bdfe76SSatish Balay Output Parameter: 346579bdfe76SSatish Balay . A - the matrix 346679bdfe76SSatish Balay 3467db81eaa0SLois Curfman McInnes Options Database Keys: 34688c07d4e3SBarry Smith + -mat_block_size - size of the blocks to use 34698c07d4e3SBarry Smith - -mat_use_hash_table <fact> 34703ffaccefSLois Curfman McInnes 3471175b88e8SBarry Smith It is recommended that one use the MatCreate(), MatSetType() and/or MatSetFromOptions(), 3472ae1d86c5SBarry Smith MatXXXXSetPreallocation() paradgm instead of this routine directly. 3473175b88e8SBarry Smith [MatXXXXSetPreallocation() is, for example, MatSeqAIJSetPreallocation] 3474175b88e8SBarry Smith 3475b259b22eSLois Curfman McInnes Notes: 347649a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 347749a6f317SBarry Smith 347847a75d0bSBarry Smith A nonzero block is any block that as 1 or more nonzeros in it 347947a75d0bSBarry Smith 348079bdfe76SSatish Balay The user MUST specify either the local or global matrix dimensions 348179bdfe76SSatish Balay (possibly both). 348279bdfe76SSatish Balay 3483be79a94dSBarry Smith If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one processor 3484be79a94dSBarry Smith than it must be used on all processors that share the object for that argument. 3485be79a94dSBarry Smith 348679bdfe76SSatish Balay Storage Information: 348779bdfe76SSatish Balay For a square global matrix we define each processor's diagonal portion 348879bdfe76SSatish Balay to be its local rows and the corresponding columns (a square submatrix); 348979bdfe76SSatish Balay each processor's off-diagonal portion encompasses the remainder of the 349079bdfe76SSatish Balay local matrix (a rectangular submatrix). 349179bdfe76SSatish Balay 349279bdfe76SSatish Balay The user can specify preallocated storage for the diagonal part of 349379bdfe76SSatish Balay the local submatrix with either d_nz or d_nnz (not both). Set 349479bdfe76SSatish Balay d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic 349579bdfe76SSatish Balay memory allocation. Likewise, specify preallocated storage for the 349679bdfe76SSatish Balay off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 349779bdfe76SSatish Balay 349879bdfe76SSatish Balay Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 349979bdfe76SSatish Balay the figure below we depict these three local rows and all columns (0-11). 350079bdfe76SSatish Balay 3501db81eaa0SLois Curfman McInnes .vb 3502db81eaa0SLois Curfman McInnes 0 1 2 3 4 5 6 7 8 9 10 11 3503db81eaa0SLois Curfman McInnes ------------------- 3504db81eaa0SLois Curfman McInnes row 3 | o o o d d d o o o o o o 3505db81eaa0SLois Curfman McInnes row 4 | o o o d d d o o o o o o 3506db81eaa0SLois Curfman McInnes row 5 | o o o d d d o o o o o o 3507db81eaa0SLois Curfman McInnes ------------------- 3508db81eaa0SLois Curfman McInnes .ve 350979bdfe76SSatish Balay 351079bdfe76SSatish Balay Thus, any entries in the d locations are stored in the d (diagonal) 351179bdfe76SSatish Balay submatrix, and any entries in the o locations are stored in the 351279bdfe76SSatish Balay o (off-diagonal) submatrix. Note that the d and the o submatrices are 351357b952d6SSatish Balay stored simply in the MATSEQBAIJ format for compressed row storage. 351479bdfe76SSatish Balay 3515d64ed03dSBarry Smith Now d_nz should indicate the number of block nonzeros per row in the d matrix, 3516d64ed03dSBarry Smith and o_nz should indicate the number of block nonzeros per row in the o matrix. 351779bdfe76SSatish Balay In general, for PDE problems in which most nonzeros are near the diagonal, 351892e8d321SLois Curfman McInnes one expects d_nz >> o_nz. For large problems you MUST preallocate memory 351992e8d321SLois Curfman McInnes or you will get TERRIBLE performance; see the users' manual chapter on 35206da5968aSLois Curfman McInnes matrices. 352179bdfe76SSatish Balay 3522027ccd11SLois Curfman McInnes Level: intermediate 3523027ccd11SLois Curfman McInnes 352492e8d321SLois Curfman McInnes .keywords: matrix, block, aij, compressed row, sparse, parallel 352579bdfe76SSatish Balay 3526aac34f13SBarry Smith .seealso: MatCreate(), MatCreateSeqBAIJ(), MatSetValues(), MatCreateMPIBAIJ(), MatMPIBAIJSetPreallocation(), MatMPIBAIJSetPreallocationCSR() 352779bdfe76SSatish Balay @*/ 35287087cfbeSBarry Smith PetscErrorCode MatCreateMPIBAIJ(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[],Mat *A) 352979bdfe76SSatish Balay { 35306849ba73SBarry Smith PetscErrorCode ierr; 3531b24ad042SBarry Smith PetscMPIInt size; 353279bdfe76SSatish Balay 3533d64ed03dSBarry Smith PetscFunctionBegin; 3534f69a0ea3SMatthew Knepley ierr = MatCreate(comm,A);CHKERRQ(ierr); 3535f69a0ea3SMatthew Knepley ierr = MatSetSizes(*A,m,n,M,N);CHKERRQ(ierr); 3536d132466eSBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 3537273d9f13SBarry Smith if (size > 1) { 3538273d9f13SBarry Smith ierr = MatSetType(*A,MATMPIBAIJ);CHKERRQ(ierr); 3539273d9f13SBarry Smith ierr = MatMPIBAIJSetPreallocation(*A,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr); 3540273d9f13SBarry Smith } else { 3541273d9f13SBarry Smith ierr = MatSetType(*A,MATSEQBAIJ);CHKERRQ(ierr); 3542273d9f13SBarry Smith ierr = MatSeqBAIJSetPreallocation(*A,bs,d_nz,d_nnz);CHKERRQ(ierr); 35433914022bSBarry Smith } 35443a40ed3dSBarry Smith PetscFunctionReturn(0); 354579bdfe76SSatish Balay } 3546026e39d0SSatish Balay 35474a2ae208SSatish Balay #undef __FUNCT__ 35484a2ae208SSatish Balay #define __FUNCT__ "MatDuplicate_MPIBAIJ" 35496849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIBAIJ(Mat matin,MatDuplicateOption cpvalues,Mat *newmat) 35500ac07820SSatish Balay { 35510ac07820SSatish Balay Mat mat; 35520ac07820SSatish Balay Mat_MPIBAIJ *a,*oldmat = (Mat_MPIBAIJ*)matin->data; 3553dfbe8321SBarry Smith PetscErrorCode ierr; 3554b24ad042SBarry Smith PetscInt len=0; 35550ac07820SSatish Balay 3556d64ed03dSBarry Smith PetscFunctionBegin; 35570ac07820SSatish Balay *newmat = 0; 35587adad957SLisandro Dalcin ierr = MatCreate(((PetscObject)matin)->comm,&mat);CHKERRQ(ierr); 3559d0f46423SBarry Smith ierr = MatSetSizes(mat,matin->rmap->n,matin->cmap->n,matin->rmap->N,matin->cmap->N);CHKERRQ(ierr); 35607adad957SLisandro Dalcin ierr = MatSetType(mat,((PetscObject)matin)->type_name);CHKERRQ(ierr); 35611d5dac46SHong Zhang ierr = PetscMemcpy(mat->ops,matin->ops,sizeof(struct _MatOps));CHKERRQ(ierr); 35627fff6886SHong Zhang 3563d5f3da31SBarry Smith mat->factortype = matin->factortype; 3564273d9f13SBarry Smith mat->preallocated = PETSC_TRUE; 35650ac07820SSatish Balay mat->assembled = PETSC_TRUE; 35667fff6886SHong Zhang mat->insertmode = NOT_SET_VALUES; 35677fff6886SHong Zhang 3568273d9f13SBarry Smith a = (Mat_MPIBAIJ*)mat->data; 3569d0f46423SBarry Smith mat->rmap->bs = matin->rmap->bs; 35700ac07820SSatish Balay a->bs2 = oldmat->bs2; 35710ac07820SSatish Balay a->mbs = oldmat->mbs; 35720ac07820SSatish Balay a->nbs = oldmat->nbs; 35730ac07820SSatish Balay a->Mbs = oldmat->Mbs; 35740ac07820SSatish Balay a->Nbs = oldmat->Nbs; 35750ac07820SSatish Balay 35761e1e43feSBarry Smith ierr = PetscLayoutReference(matin->rmap,&mat->rmap);CHKERRQ(ierr); 35771e1e43feSBarry Smith ierr = PetscLayoutReference(matin->cmap,&mat->cmap);CHKERRQ(ierr); 3578899cda47SBarry Smith 35790ac07820SSatish Balay a->size = oldmat->size; 35800ac07820SSatish Balay a->rank = oldmat->rank; 3581aef5e8e0SSatish Balay a->donotstash = oldmat->donotstash; 3582aef5e8e0SSatish Balay a->roworiented = oldmat->roworiented; 3583aef5e8e0SSatish Balay a->rowindices = 0; 35840ac07820SSatish Balay a->rowvalues = 0; 35850ac07820SSatish Balay a->getrowactive = PETSC_FALSE; 358630793edcSSatish Balay a->barray = 0; 3587899cda47SBarry Smith a->rstartbs = oldmat->rstartbs; 3588899cda47SBarry Smith a->rendbs = oldmat->rendbs; 3589899cda47SBarry Smith a->cstartbs = oldmat->cstartbs; 3590899cda47SBarry Smith a->cendbs = oldmat->cendbs; 35910ac07820SSatish Balay 3592133cdb44SSatish Balay /* hash table stuff */ 3593133cdb44SSatish Balay a->ht = 0; 3594133cdb44SSatish Balay a->hd = 0; 3595133cdb44SSatish Balay a->ht_size = 0; 3596133cdb44SSatish Balay a->ht_flag = oldmat->ht_flag; 359725fdafccSSatish Balay a->ht_fact = oldmat->ht_fact; 3598133cdb44SSatish Balay a->ht_total_ct = 0; 3599133cdb44SSatish Balay a->ht_insert_ct = 0; 3600133cdb44SSatish Balay 3601899cda47SBarry Smith ierr = PetscMemcpy(a->rangebs,oldmat->rangebs,(a->size+1)*sizeof(PetscInt));CHKERRQ(ierr); 36020ac07820SSatish Balay if (oldmat->colmap) { 3603aa482453SBarry Smith #if defined (PETSC_USE_CTABLE) 36040f5bd95cSBarry Smith ierr = PetscTableCreateCopy(oldmat->colmap,&a->colmap);CHKERRQ(ierr); 360548e59246SSatish Balay #else 3606b24ad042SBarry Smith ierr = PetscMalloc((a->Nbs)*sizeof(PetscInt),&a->colmap);CHKERRQ(ierr); 360752e6d16bSBarry Smith ierr = PetscLogObjectMemory(mat,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr); 3608b24ad042SBarry Smith ierr = PetscMemcpy(a->colmap,oldmat->colmap,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr); 360948e59246SSatish Balay #endif 36100ac07820SSatish Balay } else a->colmap = 0; 36114beb1cfeSHong Zhang 36120ac07820SSatish Balay if (oldmat->garray && (len = ((Mat_SeqBAIJ*)(oldmat->B->data))->nbs)) { 3613b24ad042SBarry Smith ierr = PetscMalloc(len*sizeof(PetscInt),&a->garray);CHKERRQ(ierr); 361452e6d16bSBarry Smith ierr = PetscLogObjectMemory(mat,len*sizeof(PetscInt));CHKERRQ(ierr); 3615b24ad042SBarry Smith ierr = PetscMemcpy(a->garray,oldmat->garray,len*sizeof(PetscInt));CHKERRQ(ierr); 36160ac07820SSatish Balay } else a->garray = 0; 36170ac07820SSatish Balay 3618533163c2SBarry Smith ierr = MatStashCreate_Private(((PetscObject)matin)->comm,matin->rmap->bs,&mat->bstash);CHKERRQ(ierr); 36190ac07820SSatish Balay ierr = VecDuplicate(oldmat->lvec,&a->lvec);CHKERRQ(ierr); 362052e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->lvec);CHKERRQ(ierr); 36210ac07820SSatish Balay ierr = VecScatterCopy(oldmat->Mvctx,&a->Mvctx);CHKERRQ(ierr); 362252e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->Mvctx);CHKERRQ(ierr); 36237fff6886SHong Zhang 36242e8a6d31SBarry Smith ierr = MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr); 362552e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->A);CHKERRQ(ierr); 36262e8a6d31SBarry Smith ierr = MatDuplicate(oldmat->B,cpvalues,&a->B);CHKERRQ(ierr); 362752e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->B);CHKERRQ(ierr); 36287adad957SLisandro Dalcin ierr = PetscFListDuplicate(((PetscObject)matin)->qlist,&((PetscObject)mat)->qlist);CHKERRQ(ierr); 36290ac07820SSatish Balay *newmat = mat; 36304beb1cfeSHong Zhang 36313a40ed3dSBarry Smith PetscFunctionReturn(0); 36320ac07820SSatish Balay } 363357b952d6SSatish Balay 36344a2ae208SSatish Balay #undef __FUNCT__ 36355bba2384SShri Abhyankar #define __FUNCT__ "MatLoad_MPIBAIJ" 3636112444f4SShri Abhyankar PetscErrorCode MatLoad_MPIBAIJ(Mat newmat,PetscViewer viewer) 36374683f7a4SShri Abhyankar { 36384683f7a4SShri Abhyankar PetscErrorCode ierr; 36394683f7a4SShri Abhyankar int fd; 36404683f7a4SShri Abhyankar PetscInt i,nz,j,rstart,rend; 36414683f7a4SShri Abhyankar PetscScalar *vals,*buf; 36424683f7a4SShri Abhyankar MPI_Comm comm = ((PetscObject)viewer)->comm; 36434683f7a4SShri Abhyankar MPI_Status status; 36444683f7a4SShri Abhyankar PetscMPIInt rank,size,maxnz; 36454683f7a4SShri Abhyankar PetscInt header[4],*rowlengths = 0,M,N,m,*rowners,*cols; 36464683f7a4SShri Abhyankar PetscInt *locrowlens = PETSC_NULL,*procsnz = PETSC_NULL,*browners = PETSC_NULL; 36474683f7a4SShri Abhyankar PetscInt jj,*mycols,*ibuf,bs=1,Mbs,mbs,extra_rows,mmax; 36484683f7a4SShri Abhyankar PetscMPIInt tag = ((PetscObject)viewer)->tag; 36494683f7a4SShri Abhyankar PetscInt *dlens = PETSC_NULL,*odlens = PETSC_NULL,*mask = PETSC_NULL,*masked1 = PETSC_NULL,*masked2 = PETSC_NULL,rowcount,odcount; 36504683f7a4SShri Abhyankar PetscInt dcount,kmax,k,nzcount,tmp,mend,sizesset=1,grows,gcols; 36514683f7a4SShri Abhyankar 36524683f7a4SShri Abhyankar PetscFunctionBegin; 36534683f7a4SShri Abhyankar ierr = PetscOptionsBegin(comm,PETSC_NULL,"Options for loading MPIBAIJ matrix 2","Mat");CHKERRQ(ierr); 36544683f7a4SShri Abhyankar ierr = PetscOptionsInt("-matload_block_size","Set the blocksize used to store the matrix","MatLoad",bs,&bs,PETSC_NULL);CHKERRQ(ierr); 36554683f7a4SShri Abhyankar ierr = PetscOptionsEnd();CHKERRQ(ierr); 36564683f7a4SShri Abhyankar 36574683f7a4SShri Abhyankar ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 36584683f7a4SShri Abhyankar ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 36594683f7a4SShri Abhyankar if (!rank) { 36604683f7a4SShri Abhyankar ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr); 36614683f7a4SShri Abhyankar ierr = PetscBinaryRead(fd,(char *)header,4,PETSC_INT);CHKERRQ(ierr); 36624683f7a4SShri Abhyankar if (header[0] != MAT_FILE_CLASSID) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"not matrix object"); 36634683f7a4SShri Abhyankar } 36644683f7a4SShri Abhyankar 36654683f7a4SShri Abhyankar if (newmat->rmap->n < 0 && newmat->rmap->N < 0 && newmat->cmap->n < 0 && newmat->cmap->N < 0) sizesset = 0; 36664683f7a4SShri Abhyankar 36674683f7a4SShri Abhyankar ierr = MPI_Bcast(header+1,3,MPIU_INT,0,comm);CHKERRQ(ierr); 36684683f7a4SShri Abhyankar M = header[1]; N = header[2]; 36694683f7a4SShri Abhyankar 36704683f7a4SShri Abhyankar /* If global rows/cols are set to PETSC_DECIDE, set it to the sizes given in the file */ 36714683f7a4SShri Abhyankar if (sizesset && newmat->rmap->N < 0) newmat->rmap->N = M; 36724683f7a4SShri Abhyankar if (sizesset && newmat->cmap->N < 0) newmat->cmap->N = N; 36734683f7a4SShri Abhyankar 36744683f7a4SShri Abhyankar /* If global sizes are set, check if they are consistent with that given in the file */ 36754683f7a4SShri Abhyankar if (sizesset) { 36764683f7a4SShri Abhyankar ierr = MatGetSize(newmat,&grows,&gcols);CHKERRQ(ierr); 36774683f7a4SShri Abhyankar } 3678abd38a8fSBarry Smith if (sizesset && newmat->rmap->N != grows) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED, "Inconsistent # of rows:Matrix in file has (%d) and input matrix has (%d)",M,grows); 3679abd38a8fSBarry Smith if (sizesset && newmat->cmap->N != gcols) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED, "Inconsistent # of cols:Matrix in file has (%d) and input matrix has (%d)",N,gcols); 36804683f7a4SShri Abhyankar 36814683f7a4SShri Abhyankar if (M != N) SETERRQ(((PetscObject)viewer)->comm,PETSC_ERR_SUP,"Can only do square matrices"); 36824683f7a4SShri Abhyankar 36834683f7a4SShri Abhyankar /* 36844683f7a4SShri Abhyankar This code adds extra rows to make sure the number of rows is 36854683f7a4SShri Abhyankar divisible by the blocksize 36864683f7a4SShri Abhyankar */ 36874683f7a4SShri Abhyankar Mbs = M/bs; 36884683f7a4SShri Abhyankar extra_rows = bs - M + bs*Mbs; 36894683f7a4SShri Abhyankar if (extra_rows == bs) extra_rows = 0; 36904683f7a4SShri Abhyankar else Mbs++; 36914683f7a4SShri Abhyankar if (extra_rows && !rank) { 36924683f7a4SShri Abhyankar ierr = PetscInfo(viewer,"Padding loaded matrix to match blocksize\n");CHKERRQ(ierr); 36934683f7a4SShri Abhyankar } 36944683f7a4SShri Abhyankar 36954683f7a4SShri Abhyankar /* determine ownership of all rows */ 36964683f7a4SShri Abhyankar if (newmat->rmap->n < 0) { /* PETSC_DECIDE */ 36974683f7a4SShri Abhyankar mbs = Mbs/size + ((Mbs % size) > rank); 36984683f7a4SShri Abhyankar m = mbs*bs; 36994683f7a4SShri Abhyankar } else { /* User set */ 37004683f7a4SShri Abhyankar m = newmat->rmap->n; 37014683f7a4SShri Abhyankar mbs = m/bs; 37024683f7a4SShri Abhyankar } 37034683f7a4SShri Abhyankar ierr = PetscMalloc2(size+1,PetscInt,&rowners,size+1,PetscInt,&browners);CHKERRQ(ierr); 37044683f7a4SShri Abhyankar ierr = MPI_Allgather(&mbs,1,MPIU_INT,rowners+1,1,MPIU_INT,comm);CHKERRQ(ierr); 37054683f7a4SShri Abhyankar 37064683f7a4SShri Abhyankar /* process 0 needs enough room for process with most rows */ 37074683f7a4SShri Abhyankar if (!rank) { 37084683f7a4SShri Abhyankar mmax = rowners[1]; 37094683f7a4SShri Abhyankar for (i=2; i<size; i++) { 37104683f7a4SShri Abhyankar mmax = PetscMax(mmax,rowners[i]); 37114683f7a4SShri Abhyankar } 37124683f7a4SShri Abhyankar mmax*=bs; 37134683f7a4SShri Abhyankar } else mmax = m; 37144683f7a4SShri Abhyankar 37154683f7a4SShri Abhyankar rowners[0] = 0; 37164683f7a4SShri Abhyankar for (i=2; i<=size; i++) rowners[i] += rowners[i-1]; 37174683f7a4SShri Abhyankar for (i=0; i<=size; i++) browners[i] = rowners[i]*bs; 37184683f7a4SShri Abhyankar rstart = rowners[rank]; 37194683f7a4SShri Abhyankar rend = rowners[rank+1]; 37204683f7a4SShri Abhyankar 37214683f7a4SShri Abhyankar /* distribute row lengths to all processors */ 37224683f7a4SShri Abhyankar ierr = PetscMalloc((mmax+1)*sizeof(PetscInt),&locrowlens);CHKERRQ(ierr); 37234683f7a4SShri Abhyankar if (!rank) { 37244683f7a4SShri Abhyankar mend = m; 37254683f7a4SShri Abhyankar if (size == 1) mend = mend - extra_rows; 37264683f7a4SShri Abhyankar ierr = PetscBinaryRead(fd,locrowlens,mend,PETSC_INT);CHKERRQ(ierr); 37274683f7a4SShri Abhyankar for (j=mend; j<m; j++) locrowlens[j] = 1; 37284683f7a4SShri Abhyankar ierr = PetscMalloc(m*sizeof(PetscInt),&rowlengths);CHKERRQ(ierr); 37294683f7a4SShri Abhyankar ierr = PetscMalloc(size*sizeof(PetscInt),&procsnz);CHKERRQ(ierr); 37304683f7a4SShri Abhyankar ierr = PetscMemzero(procsnz,size*sizeof(PetscInt));CHKERRQ(ierr); 37314683f7a4SShri Abhyankar for (j=0; j<m; j++) { 37324683f7a4SShri Abhyankar procsnz[0] += locrowlens[j]; 37334683f7a4SShri Abhyankar } 37344683f7a4SShri Abhyankar for (i=1; i<size; i++) { 37354683f7a4SShri Abhyankar mend = browners[i+1] - browners[i]; 37364683f7a4SShri Abhyankar if (i == size-1) mend = mend - extra_rows; 37374683f7a4SShri Abhyankar ierr = PetscBinaryRead(fd,rowlengths,mend,PETSC_INT);CHKERRQ(ierr); 37384683f7a4SShri Abhyankar for (j=mend; j<browners[i+1] - browners[i]; j++) rowlengths[j] = 1; 37394683f7a4SShri Abhyankar /* calculate the number of nonzeros on each processor */ 37404683f7a4SShri Abhyankar for (j=0; j<browners[i+1]-browners[i]; j++) { 37414683f7a4SShri Abhyankar procsnz[i] += rowlengths[j]; 37424683f7a4SShri Abhyankar } 37434683f7a4SShri Abhyankar ierr = MPI_Send(rowlengths,browners[i+1]-browners[i],MPIU_INT,i,tag,comm);CHKERRQ(ierr); 37444683f7a4SShri Abhyankar } 37454683f7a4SShri Abhyankar ierr = PetscFree(rowlengths);CHKERRQ(ierr); 37464683f7a4SShri Abhyankar } else { 37474683f7a4SShri Abhyankar ierr = MPI_Recv(locrowlens,m,MPIU_INT,0,tag,comm,&status);CHKERRQ(ierr); 37484683f7a4SShri Abhyankar } 37494683f7a4SShri Abhyankar 37504683f7a4SShri Abhyankar if (!rank) { 37514683f7a4SShri Abhyankar /* determine max buffer needed and allocate it */ 37524683f7a4SShri Abhyankar maxnz = procsnz[0]; 37534683f7a4SShri Abhyankar for (i=1; i<size; i++) { 37544683f7a4SShri Abhyankar maxnz = PetscMax(maxnz,procsnz[i]); 37554683f7a4SShri Abhyankar } 37564683f7a4SShri Abhyankar ierr = PetscMalloc(maxnz*sizeof(PetscInt),&cols);CHKERRQ(ierr); 37574683f7a4SShri Abhyankar 37584683f7a4SShri Abhyankar /* read in my part of the matrix column indices */ 37594683f7a4SShri Abhyankar nz = procsnz[0]; 37604683f7a4SShri Abhyankar ierr = PetscMalloc((nz+1)*sizeof(PetscInt),&ibuf);CHKERRQ(ierr); 37614683f7a4SShri Abhyankar mycols = ibuf; 37624683f7a4SShri Abhyankar if (size == 1) nz -= extra_rows; 37634683f7a4SShri Abhyankar ierr = PetscBinaryRead(fd,mycols,nz,PETSC_INT);CHKERRQ(ierr); 37644683f7a4SShri Abhyankar if (size == 1) for (i=0; i< extra_rows; i++) { mycols[nz+i] = M+i; } 37654683f7a4SShri Abhyankar 37664683f7a4SShri Abhyankar /* read in every ones (except the last) and ship off */ 37674683f7a4SShri Abhyankar for (i=1; i<size-1; i++) { 37684683f7a4SShri Abhyankar nz = procsnz[i]; 37694683f7a4SShri Abhyankar ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr); 37704683f7a4SShri Abhyankar ierr = MPI_Send(cols,nz,MPIU_INT,i,tag,comm);CHKERRQ(ierr); 37714683f7a4SShri Abhyankar } 37724683f7a4SShri Abhyankar /* read in the stuff for the last proc */ 37734683f7a4SShri Abhyankar if (size != 1) { 37744683f7a4SShri Abhyankar nz = procsnz[size-1] - extra_rows; /* the extra rows are not on the disk */ 37754683f7a4SShri Abhyankar ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr); 37764683f7a4SShri Abhyankar for (i=0; i<extra_rows; i++) cols[nz+i] = M+i; 37774683f7a4SShri Abhyankar ierr = MPI_Send(cols,nz+extra_rows,MPIU_INT,size-1,tag,comm);CHKERRQ(ierr); 37784683f7a4SShri Abhyankar } 37794683f7a4SShri Abhyankar ierr = PetscFree(cols);CHKERRQ(ierr); 37804683f7a4SShri Abhyankar } else { 37814683f7a4SShri Abhyankar /* determine buffer space needed for message */ 37824683f7a4SShri Abhyankar nz = 0; 37834683f7a4SShri Abhyankar for (i=0; i<m; i++) { 37844683f7a4SShri Abhyankar nz += locrowlens[i]; 37854683f7a4SShri Abhyankar } 37864683f7a4SShri Abhyankar ierr = PetscMalloc((nz+1)*sizeof(PetscInt),&ibuf);CHKERRQ(ierr); 37874683f7a4SShri Abhyankar mycols = ibuf; 37884683f7a4SShri Abhyankar /* receive message of column indices*/ 37894683f7a4SShri Abhyankar ierr = MPI_Recv(mycols,nz,MPIU_INT,0,tag,comm,&status);CHKERRQ(ierr); 37904683f7a4SShri Abhyankar ierr = MPI_Get_count(&status,MPIU_INT,&maxnz);CHKERRQ(ierr); 37914683f7a4SShri Abhyankar if (maxnz != nz) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 37924683f7a4SShri Abhyankar } 37934683f7a4SShri Abhyankar 37944683f7a4SShri Abhyankar /* loop over local rows, determining number of off diagonal entries */ 37954683f7a4SShri Abhyankar ierr = PetscMalloc2(rend-rstart,PetscInt,&dlens,rend-rstart,PetscInt,&odlens);CHKERRQ(ierr); 37964683f7a4SShri Abhyankar ierr = PetscMalloc3(Mbs,PetscInt,&mask,Mbs,PetscInt,&masked1,Mbs,PetscInt,&masked2);CHKERRQ(ierr); 37974683f7a4SShri Abhyankar ierr = PetscMemzero(mask,Mbs*sizeof(PetscInt));CHKERRQ(ierr); 37984683f7a4SShri Abhyankar ierr = PetscMemzero(masked1,Mbs*sizeof(PetscInt));CHKERRQ(ierr); 37994683f7a4SShri Abhyankar ierr = PetscMemzero(masked2,Mbs*sizeof(PetscInt));CHKERRQ(ierr); 38004683f7a4SShri Abhyankar rowcount = 0; nzcount = 0; 38014683f7a4SShri Abhyankar for (i=0; i<mbs; i++) { 38024683f7a4SShri Abhyankar dcount = 0; 38034683f7a4SShri Abhyankar odcount = 0; 38044683f7a4SShri Abhyankar for (j=0; j<bs; j++) { 38054683f7a4SShri Abhyankar kmax = locrowlens[rowcount]; 38064683f7a4SShri Abhyankar for (k=0; k<kmax; k++) { 38074683f7a4SShri Abhyankar tmp = mycols[nzcount++]/bs; 38084683f7a4SShri Abhyankar if (!mask[tmp]) { 38094683f7a4SShri Abhyankar mask[tmp] = 1; 38104683f7a4SShri Abhyankar if (tmp < rstart || tmp >= rend) masked2[odcount++] = tmp; 38114683f7a4SShri Abhyankar else masked1[dcount++] = tmp; 38124683f7a4SShri Abhyankar } 38134683f7a4SShri Abhyankar } 38144683f7a4SShri Abhyankar rowcount++; 38154683f7a4SShri Abhyankar } 38164683f7a4SShri Abhyankar 38174683f7a4SShri Abhyankar dlens[i] = dcount; 38184683f7a4SShri Abhyankar odlens[i] = odcount; 38194683f7a4SShri Abhyankar 38204683f7a4SShri Abhyankar /* zero out the mask elements we set */ 38214683f7a4SShri Abhyankar for (j=0; j<dcount; j++) mask[masked1[j]] = 0; 38224683f7a4SShri Abhyankar for (j=0; j<odcount; j++) mask[masked2[j]] = 0; 38234683f7a4SShri Abhyankar } 38244683f7a4SShri Abhyankar 38254683f7a4SShri Abhyankar 38264683f7a4SShri Abhyankar if (!sizesset) { 38274683f7a4SShri Abhyankar ierr = MatSetSizes(newmat,m,m,M+extra_rows,N+extra_rows);CHKERRQ(ierr); 38284683f7a4SShri Abhyankar } 38294683f7a4SShri Abhyankar ierr = MatMPIBAIJSetPreallocation(newmat,bs,0,dlens,0,odlens);CHKERRQ(ierr); 38304683f7a4SShri Abhyankar 38314683f7a4SShri Abhyankar if (!rank) { 38324683f7a4SShri Abhyankar ierr = PetscMalloc((maxnz+1)*sizeof(PetscScalar),&buf);CHKERRQ(ierr); 38334683f7a4SShri Abhyankar /* read in my part of the matrix numerical values */ 38344683f7a4SShri Abhyankar nz = procsnz[0]; 38354683f7a4SShri Abhyankar vals = buf; 38364683f7a4SShri Abhyankar mycols = ibuf; 38374683f7a4SShri Abhyankar if (size == 1) nz -= extra_rows; 38384683f7a4SShri Abhyankar ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 38394683f7a4SShri Abhyankar if (size == 1) for (i=0; i< extra_rows; i++) { vals[nz+i] = 1.0; } 38404683f7a4SShri Abhyankar 38414683f7a4SShri Abhyankar /* insert into matrix */ 38424683f7a4SShri Abhyankar jj = rstart*bs; 38434683f7a4SShri Abhyankar for (i=0; i<m; i++) { 38444683f7a4SShri Abhyankar ierr = MatSetValues_MPIBAIJ(newmat,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr); 38454683f7a4SShri Abhyankar mycols += locrowlens[i]; 38464683f7a4SShri Abhyankar vals += locrowlens[i]; 38474683f7a4SShri Abhyankar jj++; 38484683f7a4SShri Abhyankar } 38494683f7a4SShri Abhyankar /* read in other processors (except the last one) and ship out */ 38504683f7a4SShri Abhyankar for (i=1; i<size-1; i++) { 38514683f7a4SShri Abhyankar nz = procsnz[i]; 38524683f7a4SShri Abhyankar vals = buf; 38534683f7a4SShri Abhyankar ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 38544683f7a4SShri Abhyankar ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,((PetscObject)newmat)->tag,comm);CHKERRQ(ierr); 38554683f7a4SShri Abhyankar } 38564683f7a4SShri Abhyankar /* the last proc */ 38574683f7a4SShri Abhyankar if (size != 1){ 38584683f7a4SShri Abhyankar nz = procsnz[i] - extra_rows; 38594683f7a4SShri Abhyankar vals = buf; 38604683f7a4SShri Abhyankar ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 38614683f7a4SShri Abhyankar for (i=0; i<extra_rows; i++) vals[nz+i] = 1.0; 38624683f7a4SShri Abhyankar ierr = MPI_Send(vals,nz+extra_rows,MPIU_SCALAR,size-1,((PetscObject)newmat)->tag,comm);CHKERRQ(ierr); 38634683f7a4SShri Abhyankar } 38644683f7a4SShri Abhyankar ierr = PetscFree(procsnz);CHKERRQ(ierr); 38654683f7a4SShri Abhyankar } else { 38664683f7a4SShri Abhyankar /* receive numeric values */ 38674683f7a4SShri Abhyankar ierr = PetscMalloc((nz+1)*sizeof(PetscScalar),&buf);CHKERRQ(ierr); 38684683f7a4SShri Abhyankar 38694683f7a4SShri Abhyankar /* receive message of values*/ 38704683f7a4SShri Abhyankar vals = buf; 38714683f7a4SShri Abhyankar mycols = ibuf; 38724683f7a4SShri Abhyankar ierr = MPI_Recv(vals,nz,MPIU_SCALAR,0,((PetscObject)newmat)->tag,comm,&status);CHKERRQ(ierr); 38734683f7a4SShri Abhyankar ierr = MPI_Get_count(&status,MPIU_SCALAR,&maxnz);CHKERRQ(ierr); 38744683f7a4SShri Abhyankar if (maxnz != nz) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 38754683f7a4SShri Abhyankar 38764683f7a4SShri Abhyankar /* insert into matrix */ 38774683f7a4SShri Abhyankar jj = rstart*bs; 38784683f7a4SShri Abhyankar for (i=0; i<m; i++) { 38794683f7a4SShri Abhyankar ierr = MatSetValues_MPIBAIJ(newmat,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr); 38804683f7a4SShri Abhyankar mycols += locrowlens[i]; 38814683f7a4SShri Abhyankar vals += locrowlens[i]; 38824683f7a4SShri Abhyankar jj++; 38834683f7a4SShri Abhyankar } 38844683f7a4SShri Abhyankar } 38854683f7a4SShri Abhyankar ierr = PetscFree(locrowlens);CHKERRQ(ierr); 38864683f7a4SShri Abhyankar ierr = PetscFree(buf);CHKERRQ(ierr); 38874683f7a4SShri Abhyankar ierr = PetscFree(ibuf);CHKERRQ(ierr); 38884683f7a4SShri Abhyankar ierr = PetscFree2(rowners,browners);CHKERRQ(ierr); 38894683f7a4SShri Abhyankar ierr = PetscFree2(dlens,odlens);CHKERRQ(ierr); 38904683f7a4SShri Abhyankar ierr = PetscFree3(mask,masked1,masked2);CHKERRQ(ierr); 38914683f7a4SShri Abhyankar ierr = MatAssemblyBegin(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 38924683f7a4SShri Abhyankar ierr = MatAssemblyEnd(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 38934683f7a4SShri Abhyankar 38944683f7a4SShri Abhyankar PetscFunctionReturn(0); 38954683f7a4SShri Abhyankar } 38964683f7a4SShri Abhyankar 38974683f7a4SShri Abhyankar #undef __FUNCT__ 38984a2ae208SSatish Balay #define __FUNCT__ "MatMPIBAIJSetHashTableFactor" 3899133cdb44SSatish Balay /*@ 3900133cdb44SSatish Balay MatMPIBAIJSetHashTableFactor - Sets the factor required to compute the size of the HashTable. 3901133cdb44SSatish Balay 3902133cdb44SSatish Balay Input Parameters: 3903133cdb44SSatish Balay . mat - the matrix 3904133cdb44SSatish Balay . fact - factor 3905133cdb44SSatish Balay 3906c5eb9154SBarry Smith Not Collective, each process can use a different factor 3907fee21e36SBarry Smith 39088c890885SBarry Smith Level: advanced 39098c890885SBarry Smith 3910133cdb44SSatish Balay Notes: 39118c07d4e3SBarry Smith This can also be set by the command line option: -mat_use_hash_table <fact> 3912133cdb44SSatish Balay 3913133cdb44SSatish Balay .keywords: matrix, hashtable, factor, HT 3914133cdb44SSatish Balay 3915133cdb44SSatish Balay .seealso: MatSetOption() 3916133cdb44SSatish Balay @*/ 39177087cfbeSBarry Smith PetscErrorCode MatMPIBAIJSetHashTableFactor(Mat mat,PetscReal fact) 3918133cdb44SSatish Balay { 39194ac538c5SBarry Smith PetscErrorCode ierr; 39205bf65638SKris Buschelman 39215bf65638SKris Buschelman PetscFunctionBegin; 39224ac538c5SBarry Smith ierr = PetscTryMethod(mat,"MatSetHashTableFactor_C",(Mat,PetscReal),(mat,fact));CHKERRQ(ierr); 39235bf65638SKris Buschelman PetscFunctionReturn(0); 39245bf65638SKris Buschelman } 39255bf65638SKris Buschelman 3926be1d678aSKris Buschelman EXTERN_C_BEGIN 39275bf65638SKris Buschelman #undef __FUNCT__ 39285bf65638SKris Buschelman #define __FUNCT__ "MatSetHashTableFactor_MPIBAIJ" 39297087cfbeSBarry Smith PetscErrorCode MatSetHashTableFactor_MPIBAIJ(Mat mat,PetscReal fact) 39305bf65638SKris Buschelman { 393125fdafccSSatish Balay Mat_MPIBAIJ *baij; 3932133cdb44SSatish Balay 3933133cdb44SSatish Balay PetscFunctionBegin; 3934133cdb44SSatish Balay baij = (Mat_MPIBAIJ*)mat->data; 3935133cdb44SSatish Balay baij->ht_fact = fact; 3936133cdb44SSatish Balay PetscFunctionReturn(0); 3937133cdb44SSatish Balay } 3938be1d678aSKris Buschelman EXTERN_C_END 3939f2a5309cSSatish Balay 39404a2ae208SSatish Balay #undef __FUNCT__ 39414a2ae208SSatish Balay #define __FUNCT__ "MatMPIBAIJGetSeqBAIJ" 39427087cfbeSBarry Smith PetscErrorCode MatMPIBAIJGetSeqBAIJ(Mat A,Mat *Ad,Mat *Ao,PetscInt *colmap[]) 3943f2a5309cSSatish Balay { 3944f2a5309cSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 3945f2a5309cSSatish Balay PetscFunctionBegin; 3946f2a5309cSSatish Balay *Ad = a->A; 3947f2a5309cSSatish Balay *Ao = a->B; 3948195d93cdSBarry Smith *colmap = a->garray; 3949f2a5309cSSatish Balay PetscFunctionReturn(0); 3950f2a5309cSSatish Balay } 395185535b8eSBarry Smith 395285535b8eSBarry Smith /* 395385535b8eSBarry Smith Special version for direct calls from Fortran (to eliminate two function call overheads 395485535b8eSBarry Smith */ 395585535b8eSBarry Smith #if defined(PETSC_HAVE_FORTRAN_CAPS) 395685535b8eSBarry Smith #define matmpibaijsetvaluesblocked_ MATMPIBAIJSETVALUESBLOCKED 395785535b8eSBarry Smith #elif !defined(PETSC_HAVE_FORTRAN_UNDERSCORE) 395885535b8eSBarry Smith #define matmpibaijsetvaluesblocked_ matmpibaijsetvaluesblocked 395985535b8eSBarry Smith #endif 396085535b8eSBarry Smith 396185535b8eSBarry Smith #undef __FUNCT__ 396285535b8eSBarry Smith #define __FUNCT__ "matmpibiajsetvaluesblocked" 396385535b8eSBarry Smith /*@C 396485535b8eSBarry Smith MatMPIBAIJSetValuesBlocked - Direct Fortran call to replace call to MatSetValuesBlocked() 396585535b8eSBarry Smith 396685535b8eSBarry Smith Collective on Mat 396785535b8eSBarry Smith 396885535b8eSBarry Smith Input Parameters: 396985535b8eSBarry Smith + mat - the matrix 397085535b8eSBarry Smith . min - number of input rows 397185535b8eSBarry Smith . im - input rows 397285535b8eSBarry Smith . nin - number of input columns 397385535b8eSBarry Smith . in - input columns 397485535b8eSBarry Smith . v - numerical values input 397585535b8eSBarry Smith - addvin - INSERT_VALUES or ADD_VALUES 397685535b8eSBarry Smith 397785535b8eSBarry Smith Notes: This has a complete copy of MatSetValuesBlocked_MPIBAIJ() which is terrible code un-reuse. 397885535b8eSBarry Smith 397985535b8eSBarry Smith Level: advanced 398085535b8eSBarry Smith 398185535b8eSBarry Smith .seealso: MatSetValuesBlocked() 398285535b8eSBarry Smith @*/ 398385535b8eSBarry Smith PetscErrorCode matmpibaijsetvaluesblocked_(Mat *matin,PetscInt *min,const PetscInt im[],PetscInt *nin,const PetscInt in[],const MatScalar v[],InsertMode *addvin) 398485535b8eSBarry Smith { 398585535b8eSBarry Smith /* convert input arguments to C version */ 398685535b8eSBarry Smith Mat mat = *matin; 398785535b8eSBarry Smith PetscInt m = *min, n = *nin; 398885535b8eSBarry Smith InsertMode addv = *addvin; 398985535b8eSBarry Smith 399085535b8eSBarry Smith Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 399185535b8eSBarry Smith const MatScalar *value; 399285535b8eSBarry Smith MatScalar *barray=baij->barray; 3993ace3abfcSBarry Smith PetscBool roworiented = baij->roworiented; 399485535b8eSBarry Smith PetscErrorCode ierr; 399585535b8eSBarry Smith PetscInt i,j,ii,jj,row,col,rstart=baij->rstartbs; 399685535b8eSBarry Smith PetscInt rend=baij->rendbs,cstart=baij->cstartbs,stepval; 3997d0f46423SBarry Smith PetscInt cend=baij->cendbs,bs=mat->rmap->bs,bs2=baij->bs2; 399885535b8eSBarry Smith 399985535b8eSBarry Smith PetscFunctionBegin; 400085535b8eSBarry Smith /* tasks normally handled by MatSetValuesBlocked() */ 400185535b8eSBarry Smith if (mat->insertmode == NOT_SET_VALUES) { 400285535b8eSBarry Smith mat->insertmode = addv; 400385535b8eSBarry Smith } 400485535b8eSBarry Smith #if defined(PETSC_USE_DEBUG) 4005e7e72b3dSBarry Smith else if (mat->insertmode != addv) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Cannot mix add values and insert values"); 4006e32f2f54SBarry Smith if (mat->factortype) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Not for factored matrix"); 400785535b8eSBarry Smith #endif 400885535b8eSBarry Smith if (mat->assembled) { 400985535b8eSBarry Smith mat->was_assembled = PETSC_TRUE; 401085535b8eSBarry Smith mat->assembled = PETSC_FALSE; 401185535b8eSBarry Smith } 401285535b8eSBarry Smith ierr = PetscLogEventBegin(MAT_SetValues,mat,0,0,0);CHKERRQ(ierr); 401385535b8eSBarry Smith 401485535b8eSBarry Smith 401585535b8eSBarry Smith if(!barray) { 401685535b8eSBarry Smith ierr = PetscMalloc(bs2*sizeof(MatScalar),&barray);CHKERRQ(ierr); 401785535b8eSBarry Smith baij->barray = barray; 401885535b8eSBarry Smith } 401985535b8eSBarry Smith 402085535b8eSBarry Smith if (roworiented) { 402185535b8eSBarry Smith stepval = (n-1)*bs; 402285535b8eSBarry Smith } else { 402385535b8eSBarry Smith stepval = (m-1)*bs; 402485535b8eSBarry Smith } 402585535b8eSBarry Smith for (i=0; i<m; i++) { 402685535b8eSBarry Smith if (im[i] < 0) continue; 402785535b8eSBarry Smith #if defined(PETSC_USE_DEBUG) 4028e32f2f54SBarry Smith if (im[i] >= baij->Mbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large, row %D max %D",im[i],baij->Mbs-1); 402985535b8eSBarry Smith #endif 403085535b8eSBarry Smith if (im[i] >= rstart && im[i] < rend) { 403185535b8eSBarry Smith row = im[i] - rstart; 403285535b8eSBarry Smith for (j=0; j<n; j++) { 403385535b8eSBarry Smith /* If NumCol = 1 then a copy is not required */ 403485535b8eSBarry Smith if ((roworiented) && (n == 1)) { 403585535b8eSBarry Smith barray = (MatScalar*)v + i*bs2; 403685535b8eSBarry Smith } else if((!roworiented) && (m == 1)) { 403785535b8eSBarry Smith barray = (MatScalar*)v + j*bs2; 403885535b8eSBarry Smith } else { /* Here a copy is required */ 403985535b8eSBarry Smith if (roworiented) { 404085535b8eSBarry Smith value = v + i*(stepval+bs)*bs + j*bs; 404185535b8eSBarry Smith } else { 404285535b8eSBarry Smith value = v + j*(stepval+bs)*bs + i*bs; 404385535b8eSBarry Smith } 404485535b8eSBarry Smith for (ii=0; ii<bs; ii++,value+=stepval) { 404585535b8eSBarry Smith for (jj=0; jj<bs; jj++) { 404685535b8eSBarry Smith *barray++ = *value++; 404785535b8eSBarry Smith } 404885535b8eSBarry Smith } 404985535b8eSBarry Smith barray -=bs2; 405085535b8eSBarry Smith } 405185535b8eSBarry Smith 405285535b8eSBarry Smith if (in[j] >= cstart && in[j] < cend){ 405385535b8eSBarry Smith col = in[j] - cstart; 405497e5c40aSBarry Smith ierr = MatSetValuesBlocked_SeqBAIJ(baij->A,1,&row,1,&col,barray,addv);CHKERRQ(ierr); 405585535b8eSBarry Smith } 405685535b8eSBarry Smith else if (in[j] < 0) continue; 405785535b8eSBarry Smith #if defined(PETSC_USE_DEBUG) 4058cb9801acSJed Brown else if (in[j] >= baij->Nbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large, col %D max %D",in[j],baij->Nbs-1); 405985535b8eSBarry Smith #endif 406085535b8eSBarry Smith else { 406185535b8eSBarry Smith if (mat->was_assembled) { 406285535b8eSBarry Smith if (!baij->colmap) { 406385535b8eSBarry Smith ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 406485535b8eSBarry Smith } 406585535b8eSBarry Smith 406685535b8eSBarry Smith #if defined(PETSC_USE_DEBUG) 406785535b8eSBarry Smith #if defined (PETSC_USE_CTABLE) 406885535b8eSBarry Smith { PetscInt data; 406985535b8eSBarry Smith ierr = PetscTableFind(baij->colmap,in[j]+1,&data);CHKERRQ(ierr); 4070e32f2f54SBarry Smith if ((data - 1) % bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap"); 407185535b8eSBarry Smith } 407285535b8eSBarry Smith #else 4073e32f2f54SBarry Smith if ((baij->colmap[in[j]] - 1) % bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap"); 407485535b8eSBarry Smith #endif 407585535b8eSBarry Smith #endif 407685535b8eSBarry Smith #if defined (PETSC_USE_CTABLE) 407785535b8eSBarry Smith ierr = PetscTableFind(baij->colmap,in[j]+1,&col);CHKERRQ(ierr); 407885535b8eSBarry Smith col = (col - 1)/bs; 407985535b8eSBarry Smith #else 408085535b8eSBarry Smith col = (baij->colmap[in[j]] - 1)/bs; 408185535b8eSBarry Smith #endif 408285535b8eSBarry Smith if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) { 408385535b8eSBarry Smith ierr = DisAssemble_MPIBAIJ(mat);CHKERRQ(ierr); 408485535b8eSBarry Smith col = in[j]; 408585535b8eSBarry Smith } 408685535b8eSBarry Smith } 408785535b8eSBarry Smith else col = in[j]; 408897e5c40aSBarry Smith ierr = MatSetValuesBlocked_SeqBAIJ(baij->B,1,&row,1,&col,barray,addv);CHKERRQ(ierr); 408985535b8eSBarry Smith } 409085535b8eSBarry Smith } 409185535b8eSBarry Smith } else { 409285535b8eSBarry Smith if (!baij->donotstash) { 409385535b8eSBarry Smith if (roworiented) { 409485535b8eSBarry Smith ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 409585535b8eSBarry Smith } else { 409685535b8eSBarry Smith ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 409785535b8eSBarry Smith } 409885535b8eSBarry Smith } 409985535b8eSBarry Smith } 410085535b8eSBarry Smith } 410185535b8eSBarry Smith 410285535b8eSBarry Smith /* task normally handled by MatSetValuesBlocked() */ 410385535b8eSBarry Smith ierr = PetscLogEventEnd(MAT_SetValues,mat,0,0,0);CHKERRQ(ierr); 410485535b8eSBarry Smith PetscFunctionReturn(0); 410585535b8eSBarry Smith } 4106dfb205c3SBarry Smith 4107dfb205c3SBarry Smith #undef __FUNCT__ 4108dfb205c3SBarry Smith #define __FUNCT__ "MatCreateMPIBAIJWithArrays" 4109dfb205c3SBarry Smith /*@ 4110dfb205c3SBarry Smith MatCreateMPIBAIJWithArrays - creates a MPI BAIJ matrix using arrays that contain in standard 4111dfb205c3SBarry Smith CSR format the local rows. 4112dfb205c3SBarry Smith 4113dfb205c3SBarry Smith Collective on MPI_Comm 4114dfb205c3SBarry Smith 4115dfb205c3SBarry Smith Input Parameters: 4116dfb205c3SBarry Smith + comm - MPI communicator 4117dfb205c3SBarry Smith . bs - the block size, only a block size of 1 is supported 4118dfb205c3SBarry Smith . m - number of local rows (Cannot be PETSC_DECIDE) 4119dfb205c3SBarry Smith . n - This value should be the same as the local size used in creating the 4120dfb205c3SBarry Smith x vector for the matrix-vector product y = Ax. (or PETSC_DECIDE to have 4121dfb205c3SBarry Smith calculated if N is given) For square matrices n is almost always m. 4122dfb205c3SBarry Smith . M - number of global rows (or PETSC_DETERMINE to have calculated if m is given) 4123dfb205c3SBarry Smith . N - number of global columns (or PETSC_DETERMINE to have calculated if n is given) 4124dfb205c3SBarry Smith . i - row indices 4125dfb205c3SBarry Smith . j - column indices 4126dfb205c3SBarry Smith - a - matrix values 4127dfb205c3SBarry Smith 4128dfb205c3SBarry Smith Output Parameter: 4129dfb205c3SBarry Smith . mat - the matrix 4130dfb205c3SBarry Smith 4131dfb205c3SBarry Smith Level: intermediate 4132dfb205c3SBarry Smith 4133dfb205c3SBarry Smith Notes: 4134dfb205c3SBarry Smith The i, j, and a arrays ARE copied by this routine into the internal format used by PETSc; 4135dfb205c3SBarry Smith thus you CANNOT change the matrix entries by changing the values of a[] after you have 4136dfb205c3SBarry Smith called this routine. Use MatCreateMPIAIJWithSplitArrays() to avoid needing to copy the arrays. 4137dfb205c3SBarry Smith 4138dfb205c3SBarry Smith The i and j indices are 0 based, and i indices are indices corresponding to the local j array. 4139dfb205c3SBarry Smith 4140dfb205c3SBarry Smith .keywords: matrix, aij, compressed row, sparse, parallel 4141dfb205c3SBarry Smith 4142dfb205c3SBarry Smith .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatMPIAIJSetPreallocation(), MatMPIAIJSetPreallocationCSR(), 4143dfb205c3SBarry Smith MPIAIJ, MatCreateMPIAIJ(), MatCreateMPIAIJWithSplitArrays() 4144dfb205c3SBarry Smith @*/ 41457087cfbeSBarry Smith PetscErrorCode MatCreateMPIBAIJWithArrays(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,const PetscInt i[],const PetscInt j[],const PetscScalar a[],Mat *mat) 4146dfb205c3SBarry Smith { 4147dfb205c3SBarry Smith PetscErrorCode ierr; 4148dfb205c3SBarry Smith 4149dfb205c3SBarry Smith 4150dfb205c3SBarry Smith PetscFunctionBegin; 4151dfb205c3SBarry Smith if (i[0]) { 4152dfb205c3SBarry Smith SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"i (row indices) must start with 0"); 4153dfb205c3SBarry Smith } 4154dfb205c3SBarry Smith if (m < 0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"local number of rows (m) cannot be PETSC_DECIDE, or negative"); 4155dfb205c3SBarry Smith ierr = MatCreate(comm,mat);CHKERRQ(ierr); 4156dfb205c3SBarry Smith ierr = MatSetSizes(*mat,m,n,M,N);CHKERRQ(ierr); 4157dfb205c3SBarry Smith ierr = MatSetType(*mat,MATMPISBAIJ);CHKERRQ(ierr); 4158dfb205c3SBarry Smith ierr = MatMPIBAIJSetPreallocationCSR(*mat,bs,i,j,a);CHKERRQ(ierr); 4159dfb205c3SBarry Smith PetscFunctionReturn(0); 4160dfb205c3SBarry Smith } 4161