xref: /petsc/src/mat/impls/baij/mpi/mpibaij.c (revision 4a15367f0f054a95d8a3f3a066947446a2fbaceb)
1a5eb4965SSatish Balay #ifdef PETSC_RCS_HEADER
2*4a15367fSSatish Balay static char vcid[] = "$Id: mpibaij.c,v 1.102 1998/02/01 07:42:11 balay Exp balay $";
379bdfe76SSatish Balay #endif
479bdfe76SSatish Balay 
53369ce9aSBarry Smith #include "pinclude/pviewer.h"
670f55243SBarry Smith #include "src/mat/impls/baij/mpi/mpibaij.h"
7c16cb8f2SBarry Smith #include "src/vec/vecimpl.h"
879bdfe76SSatish Balay 
957b952d6SSatish Balay 
1057b952d6SSatish Balay extern int MatSetUpMultiply_MPIBAIJ(Mat);
1157b952d6SSatish Balay extern int DisAssemble_MPIBAIJ(Mat);
12d212a18eSSatish Balay extern int MatIncreaseOverlap_MPIBAIJ(Mat,int,IS *,int);
13d212a18eSSatish Balay extern int MatGetSubMatrices_MPIBAIJ(Mat,int,IS *,IS *,MatGetSubMatrixCall,Mat **);
143b2fbd54SBarry Smith 
15537820f0SBarry Smith /*
16537820f0SBarry Smith      Local utility routine that creates a mapping from the global column
1757b952d6SSatish Balay    number to the local number in the off-diagonal part of the local
1857b952d6SSatish Balay    storage of the matrix.  This is done in a non scable way since the
1957b952d6SSatish Balay    length of colmap equals the global matrix length.
2057b952d6SSatish Balay */
215615d1e5SSatish Balay #undef __FUNC__
225615d1e5SSatish Balay #define __FUNC__ "CreateColmap_MPIBAIJ_Private"
2357b952d6SSatish Balay static int CreateColmap_MPIBAIJ_Private(Mat mat)
2457b952d6SSatish Balay {
2557b952d6SSatish Balay   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *) mat->data;
2657b952d6SSatish Balay   Mat_SeqBAIJ *B = (Mat_SeqBAIJ*) baij->B->data;
27928fc39bSSatish Balay   int         nbs = B->nbs,i,bs=B->bs;;
2857b952d6SSatish Balay 
29d64ed03dSBarry Smith   PetscFunctionBegin;
30758f045eSSatish Balay   baij->colmap = (int *) PetscMalloc((baij->Nbs+1)*sizeof(int));CHKPTRQ(baij->colmap);
3157b952d6SSatish Balay   PLogObjectMemory(mat,baij->Nbs*sizeof(int));
3257b952d6SSatish Balay   PetscMemzero(baij->colmap,baij->Nbs*sizeof(int));
33928fc39bSSatish Balay   for ( i=0; i<nbs; i++ ) baij->colmap[baij->garray[i]] = i*bs+1;
343a40ed3dSBarry Smith   PetscFunctionReturn(0);
3557b952d6SSatish Balay }
3657b952d6SSatish Balay 
3780c1aa95SSatish Balay #define CHUNKSIZE  10
3880c1aa95SSatish Balay 
39f5e9677aSSatish Balay #define  MatSetValues_SeqBAIJ_A_Private(row,col,value,addv) \
4080c1aa95SSatish Balay { \
4180c1aa95SSatish Balay  \
4280c1aa95SSatish Balay     brow = row/bs;  \
4380c1aa95SSatish Balay     rp   = aj + ai[brow]; ap = aa + bs2*ai[brow]; \
44ac7a638eSSatish Balay     rmax = aimax[brow]; nrow = ailen[brow]; \
4580c1aa95SSatish Balay       bcol = col/bs; \
4680c1aa95SSatish Balay       ridx = row % bs; cidx = col % bs; \
47ab26458aSBarry Smith       low = 0; high = nrow; \
48ab26458aSBarry Smith       while (high-low > 3) { \
49ab26458aSBarry Smith         t = (low+high)/2; \
50ab26458aSBarry Smith         if (rp[t] > bcol) high = t; \
51ab26458aSBarry Smith         else              low  = t; \
52ab26458aSBarry Smith       } \
53ab26458aSBarry Smith       for ( _i=low; _i<high; _i++ ) { \
5480c1aa95SSatish Balay         if (rp[_i] > bcol) break; \
5580c1aa95SSatish Balay         if (rp[_i] == bcol) { \
5680c1aa95SSatish Balay           bap  = ap +  bs2*_i + bs*cidx + ridx; \
57eada6651SSatish Balay           if (addv == ADD_VALUES) *bap += value;  \
58eada6651SSatish Balay           else                    *bap  = value;  \
59ac7a638eSSatish Balay           goto a_noinsert; \
6080c1aa95SSatish Balay         } \
6180c1aa95SSatish Balay       } \
6289280ab3SLois Curfman McInnes       if (a->nonew == 1) goto a_noinsert; \
63a8c6a408SBarry Smith       else if (a->nonew == -1) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Inserting a new nonzero into matrix"); \
6480c1aa95SSatish Balay       if (nrow >= rmax) { \
6580c1aa95SSatish Balay         /* there is no extra room in row, therefore enlarge */ \
6680c1aa95SSatish Balay         int    new_nz = ai[a->mbs] + CHUNKSIZE,len,*new_i,*new_j; \
6780c1aa95SSatish Balay         Scalar *new_a; \
6880c1aa95SSatish Balay  \
69a8c6a408SBarry Smith         if (a->nonew == -2) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Inserting a new nonzero in the matrix"); \
7089280ab3SLois Curfman McInnes  \
7180c1aa95SSatish Balay         /* malloc new storage space */ \
7280c1aa95SSatish Balay         len     = new_nz*(sizeof(int)+bs2*sizeof(Scalar))+(a->mbs+1)*sizeof(int); \
7380c1aa95SSatish Balay         new_a   = (Scalar *) PetscMalloc( len ); CHKPTRQ(new_a); \
7480c1aa95SSatish Balay         new_j   = (int *) (new_a + bs2*new_nz); \
7580c1aa95SSatish Balay         new_i   = new_j + new_nz; \
7680c1aa95SSatish Balay  \
7780c1aa95SSatish Balay         /* copy over old data into new slots */ \
7880c1aa95SSatish Balay         for ( ii=0; ii<brow+1; ii++ ) {new_i[ii] = ai[ii];} \
7980c1aa95SSatish Balay         for ( ii=brow+1; ii<a->mbs+1; ii++ ) {new_i[ii] = ai[ii]+CHUNKSIZE;} \
8080c1aa95SSatish Balay         PetscMemcpy(new_j,aj,(ai[brow]+nrow)*sizeof(int)); \
8180c1aa95SSatish Balay         len = (new_nz - CHUNKSIZE - ai[brow] - nrow); \
8280c1aa95SSatish Balay         PetscMemcpy(new_j+ai[brow]+nrow+CHUNKSIZE,aj+ai[brow]+nrow, \
8380c1aa95SSatish Balay                                                            len*sizeof(int)); \
8480c1aa95SSatish Balay         PetscMemcpy(new_a,aa,(ai[brow]+nrow)*bs2*sizeof(Scalar)); \
8580c1aa95SSatish Balay         PetscMemzero(new_a+bs2*(ai[brow]+nrow),bs2*CHUNKSIZE*sizeof(Scalar)); \
8680c1aa95SSatish Balay         PetscMemcpy(new_a+bs2*(ai[brow]+nrow+CHUNKSIZE), \
8780c1aa95SSatish Balay                     aa+bs2*(ai[brow]+nrow),bs2*len*sizeof(Scalar));  \
8880c1aa95SSatish Balay         /* free up old matrix storage */ \
8980c1aa95SSatish Balay         PetscFree(a->a);  \
9080c1aa95SSatish Balay         if (!a->singlemalloc) {PetscFree(a->i);PetscFree(a->j);} \
9180c1aa95SSatish Balay         aa = a->a = new_a; ai = a->i = new_i; aj = a->j = new_j;  \
9280c1aa95SSatish Balay         a->singlemalloc = 1; \
9380c1aa95SSatish Balay  \
9480c1aa95SSatish Balay         rp   = aj + ai[brow]; ap = aa + bs2*ai[brow]; \
95ac7a638eSSatish Balay         rmax = aimax[brow] = aimax[brow] + CHUNKSIZE; \
9680c1aa95SSatish Balay         PLogObjectMemory(A,CHUNKSIZE*(sizeof(int) + bs2*sizeof(Scalar))); \
9780c1aa95SSatish Balay         a->maxnz += bs2*CHUNKSIZE; \
9880c1aa95SSatish Balay         a->reallocs++; \
9980c1aa95SSatish Balay         a->nz++; \
10080c1aa95SSatish Balay       } \
10180c1aa95SSatish Balay       N = nrow++ - 1;  \
10280c1aa95SSatish Balay       /* shift up all the later entries in this row */ \
10380c1aa95SSatish Balay       for ( ii=N; ii>=_i; ii-- ) { \
10480c1aa95SSatish Balay         rp[ii+1] = rp[ii]; \
10580c1aa95SSatish Balay         PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(Scalar)); \
10680c1aa95SSatish Balay       } \
10780c1aa95SSatish Balay       if (N>=_i) PetscMemzero(ap+bs2*_i,bs2*sizeof(Scalar));  \
10880c1aa95SSatish Balay       rp[_i]                      = bcol;  \
10980c1aa95SSatish Balay       ap[bs2*_i + bs*cidx + ridx] = value;  \
110ac7a638eSSatish Balay       a_noinsert:; \
11180c1aa95SSatish Balay     ailen[brow] = nrow; \
11280c1aa95SSatish Balay }
11357b952d6SSatish Balay 
114ac7a638eSSatish Balay #define  MatSetValues_SeqBAIJ_B_Private(row,col,value,addv) \
115ac7a638eSSatish Balay { \
116ac7a638eSSatish Balay  \
117ac7a638eSSatish Balay     brow = row/bs;  \
118ac7a638eSSatish Balay     rp   = bj + bi[brow]; ap = ba + bs2*bi[brow]; \
119ac7a638eSSatish Balay     rmax = bimax[brow]; nrow = bilen[brow]; \
120ac7a638eSSatish Balay       bcol = col/bs; \
121ac7a638eSSatish Balay       ridx = row % bs; cidx = col % bs; \
122ac7a638eSSatish Balay       low = 0; high = nrow; \
123ac7a638eSSatish Balay       while (high-low > 3) { \
124ac7a638eSSatish Balay         t = (low+high)/2; \
125ac7a638eSSatish Balay         if (rp[t] > bcol) high = t; \
126ac7a638eSSatish Balay         else              low  = t; \
127ac7a638eSSatish Balay       } \
128ac7a638eSSatish Balay       for ( _i=low; _i<high; _i++ ) { \
129ac7a638eSSatish Balay         if (rp[_i] > bcol) break; \
130ac7a638eSSatish Balay         if (rp[_i] == bcol) { \
131ac7a638eSSatish Balay           bap  = ap +  bs2*_i + bs*cidx + ridx; \
132ac7a638eSSatish Balay           if (addv == ADD_VALUES) *bap += value;  \
133ac7a638eSSatish Balay           else                    *bap  = value;  \
134ac7a638eSSatish Balay           goto b_noinsert; \
135ac7a638eSSatish Balay         } \
136ac7a638eSSatish Balay       } \
13789280ab3SLois Curfman McInnes       if (b->nonew == 1) goto b_noinsert; \
138a8c6a408SBarry Smith       else if (b->nonew == -1) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Inserting a new nonzero into matrix"); \
139ac7a638eSSatish Balay       if (nrow >= rmax) { \
140ac7a638eSSatish Balay         /* there is no extra room in row, therefore enlarge */ \
14174c639caSSatish Balay         int    new_nz = bi[b->mbs] + CHUNKSIZE,len,*new_i,*new_j; \
142ac7a638eSSatish Balay         Scalar *new_a; \
143ac7a638eSSatish Balay  \
144a8c6a408SBarry Smith         if (b->nonew == -2) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Inserting a new nonzero in the matrix"); \
14589280ab3SLois Curfman McInnes  \
146ac7a638eSSatish Balay         /* malloc new storage space */ \
14774c639caSSatish Balay         len     = new_nz*(sizeof(int)+bs2*sizeof(Scalar))+(b->mbs+1)*sizeof(int); \
148ac7a638eSSatish Balay         new_a   = (Scalar *) PetscMalloc( len ); CHKPTRQ(new_a); \
149ac7a638eSSatish Balay         new_j   = (int *) (new_a + bs2*new_nz); \
150ac7a638eSSatish Balay         new_i   = new_j + new_nz; \
151ac7a638eSSatish Balay  \
152ac7a638eSSatish Balay         /* copy over old data into new slots */ \
153ac7a638eSSatish Balay         for ( ii=0; ii<brow+1; ii++ ) {new_i[ii] = bi[ii];} \
15474c639caSSatish Balay         for ( ii=brow+1; ii<b->mbs+1; ii++ ) {new_i[ii] = bi[ii]+CHUNKSIZE;} \
155ac7a638eSSatish Balay         PetscMemcpy(new_j,bj,(bi[brow]+nrow)*sizeof(int)); \
156ac7a638eSSatish Balay         len = (new_nz - CHUNKSIZE - bi[brow] - nrow); \
157ac7a638eSSatish Balay         PetscMemcpy(new_j+bi[brow]+nrow+CHUNKSIZE,bj+bi[brow]+nrow, \
158ac7a638eSSatish Balay                                                            len*sizeof(int)); \
159ac7a638eSSatish Balay         PetscMemcpy(new_a,ba,(bi[brow]+nrow)*bs2*sizeof(Scalar)); \
160ac7a638eSSatish Balay         PetscMemzero(new_a+bs2*(bi[brow]+nrow),bs2*CHUNKSIZE*sizeof(Scalar)); \
161ac7a638eSSatish Balay         PetscMemcpy(new_a+bs2*(bi[brow]+nrow+CHUNKSIZE), \
162ac7a638eSSatish Balay                     ba+bs2*(bi[brow]+nrow),bs2*len*sizeof(Scalar));  \
163ac7a638eSSatish Balay         /* free up old matrix storage */ \
16474c639caSSatish Balay         PetscFree(b->a);  \
16574c639caSSatish Balay         if (!b->singlemalloc) {PetscFree(b->i);PetscFree(b->j);} \
16674c639caSSatish Balay         ba = b->a = new_a; bi = b->i = new_i; bj = b->j = new_j;  \
16774c639caSSatish Balay         b->singlemalloc = 1; \
168ac7a638eSSatish Balay  \
169ac7a638eSSatish Balay         rp   = bj + bi[brow]; ap = ba + bs2*bi[brow]; \
170ac7a638eSSatish Balay         rmax = bimax[brow] = bimax[brow] + CHUNKSIZE; \
17174c639caSSatish Balay         PLogObjectMemory(B,CHUNKSIZE*(sizeof(int) + bs2*sizeof(Scalar))); \
17274c639caSSatish Balay         b->maxnz += bs2*CHUNKSIZE; \
17374c639caSSatish Balay         b->reallocs++; \
17474c639caSSatish Balay         b->nz++; \
175ac7a638eSSatish Balay       } \
176ac7a638eSSatish Balay       N = nrow++ - 1;  \
177ac7a638eSSatish Balay       /* shift up all the later entries in this row */ \
178ac7a638eSSatish Balay       for ( ii=N; ii>=_i; ii-- ) { \
179ac7a638eSSatish Balay         rp[ii+1] = rp[ii]; \
180ac7a638eSSatish Balay         PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(Scalar)); \
181ac7a638eSSatish Balay       } \
182ac7a638eSSatish Balay       if (N>=_i) PetscMemzero(ap+bs2*_i,bs2*sizeof(Scalar));  \
183ac7a638eSSatish Balay       rp[_i]                      = bcol;  \
184ac7a638eSSatish Balay       ap[bs2*_i + bs*cidx + ridx] = value;  \
185ac7a638eSSatish Balay       b_noinsert:; \
186ac7a638eSSatish Balay     bilen[brow] = nrow; \
187ac7a638eSSatish Balay }
188ac7a638eSSatish Balay 
1895615d1e5SSatish Balay #undef __FUNC__
1905615d1e5SSatish Balay #define __FUNC__ "MatSetValues_MPIBAIJ"
191ec1ea8d8SLois Curfman McInnes int MatSetValues_MPIBAIJ(Mat mat,int m,int *im,int n,int *in,Scalar *v,InsertMode addv)
19257b952d6SSatish Balay {
19357b952d6SSatish Balay   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *) mat->data;
19457b952d6SSatish Balay   Scalar      value;
1954fa0d573SSatish Balay   int         ierr,i,j,row,col;
1964fa0d573SSatish Balay   int         roworiented = baij->roworiented,rstart_orig=baij->rstart_bs ;
1974fa0d573SSatish Balay   int         rend_orig=baij->rend_bs,cstart_orig=baij->cstart_bs;
1984fa0d573SSatish Balay   int         cend_orig=baij->cend_bs,bs=baij->bs;
19957b952d6SSatish Balay 
200eada6651SSatish Balay   /* Some Variables required in the macro */
20180c1aa95SSatish Balay   Mat         A = baij->A;
20280c1aa95SSatish Balay   Mat_SeqBAIJ *a = (Mat_SeqBAIJ *) (A)->data;
203ac7a638eSSatish Balay   int         *aimax=a->imax,*ai=a->i,*ailen=a->ilen,*aj=a->j;
204ac7a638eSSatish Balay   Scalar      *aa=a->a;
205ac7a638eSSatish Balay 
206ac7a638eSSatish Balay   Mat         B = baij->B;
207ac7a638eSSatish Balay   Mat_SeqBAIJ *b = (Mat_SeqBAIJ *) (B)->data;
208ac7a638eSSatish Balay   int         *bimax=b->imax,*bi=b->i,*bilen=b->ilen,*bj=b->j;
209ac7a638eSSatish Balay   Scalar      *ba=b->a;
210ac7a638eSSatish Balay 
211ac7a638eSSatish Balay   int         *rp,ii,nrow,_i,rmax,N,brow,bcol;
212ab26458aSBarry Smith   int         low,high,t,ridx,cidx,bs2=a->bs2;
213ac7a638eSSatish Balay   Scalar      *ap,*bap;
21480c1aa95SSatish Balay 
215d64ed03dSBarry Smith   PetscFunctionBegin;
21657b952d6SSatish Balay   for ( i=0; i<m; i++ ) {
2173a40ed3dSBarry Smith #if defined(USE_PETSC_BOPT_g)
218a8c6a408SBarry Smith     if (im[i] < 0) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Negative row");
219a8c6a408SBarry Smith     if (im[i] >= baij->M) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Row too large");
220639f9d9dSBarry Smith #endif
22157b952d6SSatish Balay     if (im[i] >= rstart_orig && im[i] < rend_orig) {
22257b952d6SSatish Balay       row = im[i] - rstart_orig;
22357b952d6SSatish Balay       for ( j=0; j<n; j++ ) {
22457b952d6SSatish Balay         if (in[j] >= cstart_orig && in[j] < cend_orig){
22557b952d6SSatish Balay           col = in[j] - cstart_orig;
22657b952d6SSatish Balay           if (roworiented) value = v[i*n+j]; else value = v[i+j*m];
227f5e9677aSSatish Balay           MatSetValues_SeqBAIJ_A_Private(row,col,value,addv);
22880c1aa95SSatish Balay           /* ierr = MatSetValues_SeqBAIJ(baij->A,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */
22957b952d6SSatish Balay         }
2303a40ed3dSBarry Smith #if defined(USE_PETSC_BOPT_g)
231a8c6a408SBarry Smith         else if (in[j] < 0) {SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Negative column");}
232a8c6a408SBarry Smith         else if (in[j] >= baij->N) {SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Col too large");}
233639f9d9dSBarry Smith #endif
23457b952d6SSatish Balay         else {
23557b952d6SSatish Balay           if (mat->was_assembled) {
236905e6a2fSBarry Smith             if (!baij->colmap) {
237905e6a2fSBarry Smith               ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
238905e6a2fSBarry Smith             }
239905e6a2fSBarry Smith             col = baij->colmap[in[j]/bs] - 1 + in[j]%bs;
24057b952d6SSatish Balay             if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) {
24157b952d6SSatish Balay               ierr = DisAssemble_MPIBAIJ(mat); CHKERRQ(ierr);
24257b952d6SSatish Balay               col =  in[j];
2439bf004c3SSatish Balay               /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */
2449bf004c3SSatish Balay               B = baij->B;
2459bf004c3SSatish Balay               b = (Mat_SeqBAIJ *) (B)->data;
2469bf004c3SSatish Balay               bimax=b->imax;bi=b->i;bilen=b->ilen;bj=b->j;
2479bf004c3SSatish Balay               ba=b->a;
24857b952d6SSatish Balay             }
249d64ed03dSBarry Smith           } else col = in[j];
25057b952d6SSatish Balay           if (roworiented) value = v[i*n+j]; else value = v[i+j*m];
251ac7a638eSSatish Balay           MatSetValues_SeqBAIJ_B_Private(row,col,value,addv);
252ac7a638eSSatish Balay           /* ierr = MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */
25357b952d6SSatish Balay         }
25457b952d6SSatish Balay       }
255d64ed03dSBarry Smith     } else {
25690f02eecSBarry Smith       if (roworiented && !baij->donotstash) {
25757b952d6SSatish Balay         ierr = StashValues_Private(&baij->stash,im[i],n,in,v+i*n,addv);CHKERRQ(ierr);
258d64ed03dSBarry Smith       } else {
25990f02eecSBarry Smith         if (!baij->donotstash) {
26057b952d6SSatish Balay           row = im[i];
26157b952d6SSatish Balay 	  for ( j=0; j<n; j++ ) {
26257b952d6SSatish Balay 	    ierr = StashValues_Private(&baij->stash,row,1,in+j,v+i+j*m,addv);CHKERRQ(ierr);
26357b952d6SSatish Balay           }
26457b952d6SSatish Balay         }
26557b952d6SSatish Balay       }
26657b952d6SSatish Balay     }
26790f02eecSBarry Smith   }
2683a40ed3dSBarry Smith   PetscFunctionReturn(0);
26957b952d6SSatish Balay }
27057b952d6SSatish Balay 
271ab26458aSBarry Smith extern int MatSetValuesBlocked_SeqBAIJ(Mat,int,int*,int,int*,Scalar*,InsertMode);
272ab26458aSBarry Smith #undef __FUNC__
273ab26458aSBarry Smith #define __FUNC__ "MatSetValuesBlocked_MPIBAIJ"
274ec1ea8d8SLois Curfman McInnes int MatSetValuesBlocked_MPIBAIJ(Mat mat,int m,int *im,int n,int *in,Scalar *v,InsertMode addv)
275ab26458aSBarry Smith {
276ab26458aSBarry Smith   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *) mat->data;
27730793edcSSatish Balay   Scalar      *value,*barray=baij->barray;
278abef11f7SSatish Balay   int         ierr,i,j,ii,jj,row,col,k,l;
279ab26458aSBarry Smith   int         roworiented = baij->roworiented,rstart=baij->rstart ;
280ab26458aSBarry Smith   int         rend=baij->rend,cstart=baij->cstart,stepval;
281ab26458aSBarry Smith   int         cend=baij->cend,bs=baij->bs,bs2=baij->bs2;
282ab26458aSBarry Smith 
28330793edcSSatish Balay   if(!barray) {
28447513183SBarry Smith     baij->barray = barray = (Scalar*) PetscMalloc(bs2*sizeof(Scalar)); CHKPTRQ(barray);
28530793edcSSatish Balay   }
28630793edcSSatish Balay 
287ab26458aSBarry Smith   if (roworiented) {
288ab26458aSBarry Smith     stepval = (n-1)*bs;
289ab26458aSBarry Smith   } else {
290ab26458aSBarry Smith     stepval = (m-1)*bs;
291ab26458aSBarry Smith   }
292ab26458aSBarry Smith   for ( i=0; i<m; i++ ) {
2933a40ed3dSBarry Smith #if defined(USE_PETSC_BOPT_g)
294a8c6a408SBarry Smith     if (im[i] < 0) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Negative row");
295a8c6a408SBarry Smith     if (im[i] >= baij->Mbs) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Row too large");
296ab26458aSBarry Smith #endif
297ab26458aSBarry Smith     if (im[i] >= rstart && im[i] < rend) {
298ab26458aSBarry Smith       row = im[i] - rstart;
299ab26458aSBarry Smith       for ( j=0; j<n; j++ ) {
30015b57d14SSatish Balay         /* If NumCol = 1 then a copy is not required */
30115b57d14SSatish Balay         if ((roworiented) && (n == 1)) {
30215b57d14SSatish Balay           barray = v + i*bs2;
30315b57d14SSatish Balay         } else if((!roworiented) && (m == 1)) {
30415b57d14SSatish Balay           barray = v + j*bs2;
30515b57d14SSatish Balay         } else { /* Here a copy is required */
306ab26458aSBarry Smith           if (roworiented) {
307ab26458aSBarry Smith             value = v + i*(stepval+bs)*bs + j*bs;
308ab26458aSBarry Smith           } else {
309ab26458aSBarry Smith             value = v + j*(stepval+bs)*bs + i*bs;
310abef11f7SSatish Balay           }
31147513183SBarry Smith           for ( ii=0; ii<bs; ii++,value+=stepval ) {
31247513183SBarry Smith             for (jj=0; jj<bs; jj++ ) {
31330793edcSSatish Balay               *barray++  = *value++;
31447513183SBarry Smith             }
31547513183SBarry Smith           }
31630793edcSSatish Balay           barray -=bs2;
31715b57d14SSatish Balay         }
318abef11f7SSatish Balay 
319abef11f7SSatish Balay         if (in[j] >= cstart && in[j] < cend){
320abef11f7SSatish Balay           col  = in[j] - cstart;
32130793edcSSatish Balay           ierr = MatSetValuesBlocked_SeqBAIJ(baij->A,1,&row,1,&col,barray,addv);CHKERRQ(ierr);
322ab26458aSBarry Smith         }
3233a40ed3dSBarry Smith #if defined(USE_PETSC_BOPT_g)
324a8c6a408SBarry Smith         else if (in[j] < 0) {SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Negative column");}
325a8c6a408SBarry Smith         else if (in[j] >= baij->Nbs) {SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Column too large");}
326ab26458aSBarry Smith #endif
327ab26458aSBarry Smith         else {
328ab26458aSBarry Smith           if (mat->was_assembled) {
329ab26458aSBarry Smith             if (!baij->colmap) {
330ab26458aSBarry Smith               ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
331ab26458aSBarry Smith             }
332a5eb4965SSatish Balay 
3333a40ed3dSBarry Smith #if defined(USE_PETSC_BOPT_g)
334a8c6a408SBarry Smith             if ((baij->colmap[in[j]] - 1) % bs) {SETERRQ(PETSC_ERR_PLIB,0,"Incorrect colmap");}
335a5eb4965SSatish Balay #endif
336a5eb4965SSatish Balay             col = (baij->colmap[in[j]] - 1)/bs;
337ab26458aSBarry Smith             if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) {
338ab26458aSBarry Smith               ierr = DisAssemble_MPIBAIJ(mat); CHKERRQ(ierr);
339ab26458aSBarry Smith               col =  in[j];
340ab26458aSBarry Smith             }
341ab26458aSBarry Smith           }
342ab26458aSBarry Smith           else col = in[j];
34330793edcSSatish Balay           ierr = MatSetValuesBlocked_SeqBAIJ(baij->B,1,&row,1,&col,barray,addv);CHKERRQ(ierr);
344ab26458aSBarry Smith         }
345ab26458aSBarry Smith       }
346d64ed03dSBarry Smith     } else {
347ab26458aSBarry Smith       if (!baij->donotstash) {
348ab26458aSBarry Smith         if (roworiented ) {
349abef11f7SSatish Balay           row   = im[i]*bs;
350abef11f7SSatish Balay           value = v + i*(stepval+bs)*bs;
351abef11f7SSatish Balay           for ( j=0; j<bs; j++,row++ ) {
352abef11f7SSatish Balay             for ( k=0; k<n; k++ ) {
353abef11f7SSatish Balay               for ( col=in[k]*bs,l=0; l<bs; l++,col++) {
354abef11f7SSatish Balay                 ierr = StashValues_Private(&baij->stash,row,1,&col,value++,addv);CHKERRQ(ierr);
355abef11f7SSatish Balay               }
356ab26458aSBarry Smith             }
357ab26458aSBarry Smith           }
358d64ed03dSBarry Smith         } else {
359ab26458aSBarry Smith           for ( j=0; j<n; j++ ) {
360abef11f7SSatish Balay             value = v + j*(stepval+bs)*bs + i*bs;
361abef11f7SSatish Balay             col   = in[j]*bs;
362abef11f7SSatish Balay             for ( k=0; k<bs; k++,col++,value+=stepval) {
363abef11f7SSatish Balay               for ( row = im[i]*bs,l=0; l<bs; l++,row++) {
364abef11f7SSatish Balay                 ierr = StashValues_Private(&baij->stash,row,1,&col,value++,addv);CHKERRQ(ierr);
365ab26458aSBarry Smith               }
366ab26458aSBarry Smith             }
367ab26458aSBarry Smith           }
368abef11f7SSatish Balay         }
369abef11f7SSatish Balay       }
370ab26458aSBarry Smith     }
371ab26458aSBarry Smith   }
3723a40ed3dSBarry Smith   PetscFunctionReturn(0);
373ab26458aSBarry Smith }
3740bdbc534SSatish Balay #include <math.h>
3750bdbc534SSatish Balay #define HASH_KEY 0.6180339887
376c2760754SSatish Balay /* #define HASH1(size,key) ((int)((size)*fmod(((key)*HASH_KEY),1))) */
377c2760754SSatish Balay #define HASH(size,key,tmp) (tmp = (key)*HASH_KEY,(int)((size)*(tmp-(int)tmp)))
378c2760754SSatish Balay /* #define HASH(size,key,tmp) ((int)((size)*fmod(((key)*HASH_KEY),1))) */
3795615d1e5SSatish Balay #undef __FUNC__
3800bdbc534SSatish Balay #define __FUNC__ "MatSetValues_MPIBAIJ_HT"
3810bdbc534SSatish Balay int MatSetValues_MPIBAIJ_HT(Mat mat,int m,int *im,int n,int *in,Scalar *v,InsertMode addv)
3820bdbc534SSatish Balay {
3830bdbc534SSatish Balay   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *) mat->data;
3840bdbc534SSatish Balay   int         ierr,i,j,row,col;
3850bdbc534SSatish Balay   int         roworiented = baij->roworiented,rstart_orig=baij->rstart_bs ;
386c2760754SSatish Balay   int         rend_orig=baij->rend_bs,Nbs=baij->Nbs;
387c2760754SSatish Balay   int         h1,key,size=baij->ht_size,bs=baij->bs,*HT=baij->ht,idx;
388c2760754SSatish Balay   double      tmp;
389b9e4cc15SSatish Balay   Scalar      ** HD = baij->hd,value;
390*4a15367fSSatish Balay #if defined(USE_PETSC_BOPT_g)
391*4a15367fSSatish Balay   int         total_ct=baij->ht_total_ct,insert_ct=baij->ht_insert_ct;
392*4a15367fSSatish Balay #endif
3930bdbc534SSatish Balay 
3940bdbc534SSatish Balay   PetscFunctionBegin;
3950bdbc534SSatish Balay 
3960bdbc534SSatish Balay   for ( i=0; i<m; i++ ) {
3970bdbc534SSatish Balay #if defined(USE_PETSC_BOPT_g)
3980bdbc534SSatish Balay     if (im[i] < 0) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Negative row");
3990bdbc534SSatish Balay     if (im[i] >= baij->M) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Row too large");
4000bdbc534SSatish Balay #endif
4010bdbc534SSatish Balay       row = im[i];
402c2760754SSatish Balay     if (row >= rstart_orig && row < rend_orig) {
4030bdbc534SSatish Balay       for ( j=0; j<n; j++ ) {
4040bdbc534SSatish Balay         col = in[j];
4050bdbc534SSatish Balay         if (roworiented) value = v[i*n+j]; else value = v[i+j*m];
4060bdbc534SSatish Balay         /* Look up into the Hash Table */
407c2760754SSatish Balay         key = (row/bs)*Nbs+(col/bs)+1;
408c2760754SSatish Balay         h1  = HASH(size,key,tmp);
4090bdbc534SSatish Balay 
410c2760754SSatish Balay 
411c2760754SSatish Balay         idx = h1;
412187ce0cbSSatish Balay #if defined(USE_PETSC_BOPT_g)
413187ce0cbSSatish Balay         insert_ct++;
414187ce0cbSSatish Balay         total_ct++;
415187ce0cbSSatish Balay         if (HT[idx] != key) {
416187ce0cbSSatish Balay           for ( idx=h1; (idx<size) && (HT[idx]!=key); idx++,total_ct++);
417187ce0cbSSatish Balay           if (idx == size) {
418187ce0cbSSatish Balay             for ( idx=0; (idx<h1) && (HT[idx]!=key); idx++,total_ct++);
419187ce0cbSSatish Balay             if (idx == h1) {
420187ce0cbSSatish Balay               SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"(row,col) has no entry in the hash table");
421187ce0cbSSatish Balay             }
422187ce0cbSSatish Balay           }
423187ce0cbSSatish Balay         }
424187ce0cbSSatish Balay #else
425c2760754SSatish Balay         if (HT[idx] != key) {
426c2760754SSatish Balay           for ( idx=h1; (idx<size) && (HT[idx]!=key); idx++);
427c2760754SSatish Balay           if (idx == size) {
428c2760754SSatish Balay             for ( idx=0; (idx<h1) && (HT[idx]!=key); idx++);
429c2760754SSatish Balay             if (idx == h1) {
430c2760754SSatish Balay               SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"(row,col) has no entry in the hash table");
431c2760754SSatish Balay             }
432c2760754SSatish Balay           }
433c2760754SSatish Balay         }
434187ce0cbSSatish Balay #endif
435c2760754SSatish Balay         /* A HASH table entry is found, so insert the values at the correct address */
436c2760754SSatish Balay         if (addv == ADD_VALUES) *(HD[idx]+ (col % bs)*bs + (row % bs)) += value;
437c2760754SSatish Balay         else                    *(HD[idx]+ (col % bs)*bs + (row % bs))  = value;
4380bdbc534SSatish Balay       }
4390bdbc534SSatish Balay     } else {
4400bdbc534SSatish Balay       if (roworiented && !baij->donotstash) {
4410bdbc534SSatish Balay         ierr = StashValues_Private(&baij->stash,im[i],n,in,v+i*n,addv);CHKERRQ(ierr);
4420bdbc534SSatish Balay       } else {
4430bdbc534SSatish Balay         if (!baij->donotstash) {
4440bdbc534SSatish Balay           row = im[i];
4450bdbc534SSatish Balay 	  for ( j=0; j<n; j++ ) {
4460bdbc534SSatish Balay 	    ierr = StashValues_Private(&baij->stash,row,1,in+j,v+i+j*m,addv);CHKERRQ(ierr);
4470bdbc534SSatish Balay           }
4480bdbc534SSatish Balay         }
4490bdbc534SSatish Balay       }
4500bdbc534SSatish Balay     }
4510bdbc534SSatish Balay   }
452187ce0cbSSatish Balay #if defined(USE_PETSC_BOPT_g)
453187ce0cbSSatish Balay   baij->ht_total_ct = total_ct;
454187ce0cbSSatish Balay   baij->ht_insert_ct = insert_ct;
455187ce0cbSSatish Balay #endif
4560bdbc534SSatish Balay   PetscFunctionReturn(0);
4570bdbc534SSatish Balay }
4580bdbc534SSatish Balay 
4590bdbc534SSatish Balay #undef __FUNC__
4600bdbc534SSatish Balay #define __FUNC__ "MatSetValuesBlocked_MPIBAIJ_HT"
4610bdbc534SSatish Balay int MatSetValuesBlocked_MPIBAIJ_HT(Mat mat,int m,int *im,int n,int *in,Scalar *v,InsertMode addv)
4620bdbc534SSatish Balay {
4630bdbc534SSatish Balay   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *) mat->data;
4640bdbc534SSatish Balay   int         ierr,i,j,ii,jj,row,col,k,l;
4650bdbc534SSatish Balay   int         roworiented = baij->roworiented,rstart=baij->rstart ;
466b4cc0f5aSSatish Balay   int         rend=baij->rend,stepval,bs=baij->bs,bs2=baij->bs2;
467c2760754SSatish Balay   int         h1,key,size=baij->ht_size,idx,*HT=baij->ht,Nbs=baij->Nbs;
468c2760754SSatish Balay   double      tmp;
469187ce0cbSSatish Balay   Scalar      ** HD = baij->hd,*value,*v_t,*baij_a;
470*4a15367fSSatish Balay #if defined(USE_PETSC_BOPT_g)
471*4a15367fSSatish Balay   int         total_ct=baij->ht_total_ct,insert_ct=baij->ht_insert_ct;
472*4a15367fSSatish Balay #endif
4730bdbc534SSatish Balay 
474d0a41580SSatish Balay   PetscFunctionBegin;
475d0a41580SSatish Balay 
4760bdbc534SSatish Balay   if (roworiented) {
4770bdbc534SSatish Balay     stepval = (n-1)*bs;
4780bdbc534SSatish Balay   } else {
4790bdbc534SSatish Balay     stepval = (m-1)*bs;
4800bdbc534SSatish Balay   }
4810bdbc534SSatish Balay   for ( i=0; i<m; i++ ) {
4820bdbc534SSatish Balay #if defined(USE_PETSC_BOPT_g)
4830bdbc534SSatish Balay     if (im[i] < 0) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Negative row");
4840bdbc534SSatish Balay     if (im[i] >= baij->Mbs) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Row too large");
4850bdbc534SSatish Balay #endif
4860bdbc534SSatish Balay     row   = im[i];
487187ce0cbSSatish Balay     v_t   = v + i*bs2;
488c2760754SSatish Balay     if (row >= rstart && row < rend) {
4890bdbc534SSatish Balay       for ( j=0; j<n; j++ ) {
4900bdbc534SSatish Balay         col = in[j];
4910bdbc534SSatish Balay 
4920bdbc534SSatish Balay         /* Look up into the Hash Table */
493c2760754SSatish Balay         key = row*Nbs+col+1;
494c2760754SSatish Balay         h1  = HASH(size,key,tmp);
4950bdbc534SSatish Balay 
496c2760754SSatish Balay         idx = h1;
497187ce0cbSSatish Balay #if defined(USE_PETSC_BOPT_g)
498187ce0cbSSatish Balay         total_ct++;
499187ce0cbSSatish Balay         insert_ct++;
500187ce0cbSSatish Balay        if (HT[idx] != key) {
501187ce0cbSSatish Balay           for ( idx=h1; (idx<size) && (HT[idx]!=key); idx++,total_ct++);
502187ce0cbSSatish Balay           if (idx == size) {
503187ce0cbSSatish Balay             for ( idx=0; (idx<h1) && (HT[idx]!=key); idx++,total_ct++);
504187ce0cbSSatish Balay             if (idx == h1) {
505187ce0cbSSatish Balay               SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"(row,col) has no entry in the hash table");
506187ce0cbSSatish Balay             }
507187ce0cbSSatish Balay           }
508187ce0cbSSatish Balay         }
509187ce0cbSSatish Balay #else
510c2760754SSatish Balay         if (HT[idx] != key) {
511c2760754SSatish Balay           for ( idx=h1; (idx<size) && (HT[idx]!=key); idx++);
512c2760754SSatish Balay           if (idx == size) {
513c2760754SSatish Balay             for ( idx=0; (idx<h1) && (HT[idx]!=key); idx++);
514c2760754SSatish Balay             if (idx == h1) {
515c2760754SSatish Balay               SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"(row,col) has no entry in the hash table");
516c2760754SSatish Balay             }
517c2760754SSatish Balay           }
518c2760754SSatish Balay         }
519187ce0cbSSatish Balay #endif
520c2760754SSatish Balay         baij_a = HD[idx];
5210bdbc534SSatish Balay         if (roworiented) {
522c2760754SSatish Balay           /*value = v + i*(stepval+bs)*bs + j*bs;*/
523187ce0cbSSatish Balay           /* value = v + (i*(stepval+bs)+j)*bs; */
524187ce0cbSSatish Balay           value = v_t;
525187ce0cbSSatish Balay           v_t  += bs;
526fef45726SSatish Balay           if (addv == ADD_VALUES) {
527c2760754SSatish Balay             for ( ii=0; ii<bs; ii++,value+=stepval) {
528c2760754SSatish Balay               for ( jj=ii; jj<bs2; jj+=bs ) {
529fef45726SSatish Balay                 baij_a[jj]  += *value++;
530b4cc0f5aSSatish Balay               }
531b4cc0f5aSSatish Balay             }
532fef45726SSatish Balay           } else {
533c2760754SSatish Balay             for ( ii=0; ii<bs; ii++,value+=stepval) {
534c2760754SSatish Balay               for ( jj=ii; jj<bs2; jj+=bs ) {
535fef45726SSatish Balay                 baij_a[jj]  = *value++;
536fef45726SSatish Balay               }
537fef45726SSatish Balay             }
538fef45726SSatish Balay           }
5390bdbc534SSatish Balay         } else {
5400bdbc534SSatish Balay           value = v + j*(stepval+bs)*bs + i*bs;
541fef45726SSatish Balay           if (addv == ADD_VALUES) {
542b4cc0f5aSSatish Balay             for ( ii=0; ii<bs; ii++,value+=stepval,baij_a+=bs ) {
5430bdbc534SSatish Balay               for ( jj=0; jj<bs; jj++ ) {
544fef45726SSatish Balay                 baij_a[jj]  += *value++;
545fef45726SSatish Balay               }
546fef45726SSatish Balay             }
547fef45726SSatish Balay           } else {
548fef45726SSatish Balay             for ( ii=0; ii<bs; ii++,value+=stepval,baij_a+=bs ) {
549fef45726SSatish Balay               for ( jj=0; jj<bs; jj++ ) {
550fef45726SSatish Balay                 baij_a[jj]  = *value++;
551fef45726SSatish Balay               }
552b4cc0f5aSSatish Balay             }
5530bdbc534SSatish Balay           }
5540bdbc534SSatish Balay         }
5550bdbc534SSatish Balay       }
5560bdbc534SSatish Balay     } else {
5570bdbc534SSatish Balay       if (!baij->donotstash) {
5580bdbc534SSatish Balay         if (roworiented ) {
5590bdbc534SSatish Balay           row   = im[i]*bs;
5600bdbc534SSatish Balay           value = v + i*(stepval+bs)*bs;
5610bdbc534SSatish Balay           for ( j=0; j<bs; j++,row++ ) {
5620bdbc534SSatish Balay             for ( k=0; k<n; k++ ) {
5630bdbc534SSatish Balay               for ( col=in[k]*bs,l=0; l<bs; l++,col++) {
5640bdbc534SSatish Balay                 ierr = StashValues_Private(&baij->stash,row,1,&col,value++,addv);CHKERRQ(ierr);
5650bdbc534SSatish Balay               }
5660bdbc534SSatish Balay             }
5670bdbc534SSatish Balay           }
5680bdbc534SSatish Balay         } else {
5690bdbc534SSatish Balay           for ( j=0; j<n; j++ ) {
5700bdbc534SSatish Balay             value = v + j*(stepval+bs)*bs + i*bs;
5710bdbc534SSatish Balay             col   = in[j]*bs;
5720bdbc534SSatish Balay             for ( k=0; k<bs; k++,col++,value+=stepval) {
5730bdbc534SSatish Balay               for ( row = im[i]*bs,l=0; l<bs; l++,row++) {
5740bdbc534SSatish Balay                 ierr = StashValues_Private(&baij->stash,row,1,&col,value++,addv);CHKERRQ(ierr);
5750bdbc534SSatish Balay               }
5760bdbc534SSatish Balay             }
5770bdbc534SSatish Balay           }
5780bdbc534SSatish Balay         }
5790bdbc534SSatish Balay       }
5800bdbc534SSatish Balay     }
5810bdbc534SSatish Balay   }
582187ce0cbSSatish Balay #if defined(USE_PETSC_BOPT_g)
583187ce0cbSSatish Balay   baij->ht_total_ct = total_ct;
584187ce0cbSSatish Balay   baij->ht_insert_ct = insert_ct;
585187ce0cbSSatish Balay #endif
5860bdbc534SSatish Balay   PetscFunctionReturn(0);
5870bdbc534SSatish Balay }
5880bdbc534SSatish Balay #undef __FUNC__
5895615d1e5SSatish Balay #define __FUNC__ "MatGetValues_MPIBAIJ"
590ec1ea8d8SLois Curfman McInnes int MatGetValues_MPIBAIJ(Mat mat,int m,int *idxm,int n,int *idxn,Scalar *v)
591d6de1c52SSatish Balay {
592d6de1c52SSatish Balay   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *) mat->data;
593d6de1c52SSatish Balay   int        bs=baij->bs,ierr,i,j, bsrstart = baij->rstart*bs, bsrend = baij->rend*bs;
594d6de1c52SSatish Balay   int        bscstart = baij->cstart*bs, bscend = baij->cend*bs,row,col;
595d6de1c52SSatish Balay 
596d6de1c52SSatish Balay   for ( i=0; i<m; i++ ) {
597a8c6a408SBarry Smith     if (idxm[i] < 0) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Negative row");
598a8c6a408SBarry Smith     if (idxm[i] >= baij->M) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Row too large");
599d6de1c52SSatish Balay     if (idxm[i] >= bsrstart && idxm[i] < bsrend) {
600d6de1c52SSatish Balay       row = idxm[i] - bsrstart;
601d6de1c52SSatish Balay       for ( j=0; j<n; j++ ) {
602a8c6a408SBarry Smith         if (idxn[j] < 0) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Negative column");
603a8c6a408SBarry Smith         if (idxn[j] >= baij->N) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Column too large");
604d6de1c52SSatish Balay         if (idxn[j] >= bscstart && idxn[j] < bscend){
605d6de1c52SSatish Balay           col = idxn[j] - bscstart;
606d6de1c52SSatish Balay           ierr = MatGetValues(baij->A,1,&row,1,&col,v+i*n+j); CHKERRQ(ierr);
607d64ed03dSBarry Smith         } else {
608905e6a2fSBarry Smith           if (!baij->colmap) {
609905e6a2fSBarry Smith             ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
610905e6a2fSBarry Smith           }
611e60e1c95SSatish Balay           if((baij->colmap[idxn[j]/bs]-1 < 0) ||
612dcb20de4SSatish Balay              (baij->garray[(baij->colmap[idxn[j]/bs]-1)/bs] != idxn[j]/bs)) *(v+i*n+j) = 0.0;
613d9d09a02SSatish Balay           else {
614dcb20de4SSatish Balay             col  = (baij->colmap[idxn[j]/bs]-1) + idxn[j]%bs;
615d6de1c52SSatish Balay             ierr = MatGetValues(baij->B,1,&row,1,&col,v+i*n+j); CHKERRQ(ierr);
616d6de1c52SSatish Balay           }
617d6de1c52SSatish Balay         }
618d6de1c52SSatish Balay       }
619d64ed03dSBarry Smith     } else {
620a8c6a408SBarry Smith       SETERRQ(PETSC_ERR_SUP,0,"Only local values currently supported");
621d6de1c52SSatish Balay     }
622d6de1c52SSatish Balay   }
6233a40ed3dSBarry Smith  PetscFunctionReturn(0);
624d6de1c52SSatish Balay }
625d6de1c52SSatish Balay 
6265615d1e5SSatish Balay #undef __FUNC__
6275615d1e5SSatish Balay #define __FUNC__ "MatNorm_MPIBAIJ"
628ec1ea8d8SLois Curfman McInnes int MatNorm_MPIBAIJ(Mat mat,NormType type,double *norm)
629d6de1c52SSatish Balay {
630d6de1c52SSatish Balay   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *) mat->data;
631d6de1c52SSatish Balay   Mat_SeqBAIJ *amat = (Mat_SeqBAIJ*) baij->A->data, *bmat = (Mat_SeqBAIJ*) baij->B->data;
632acdf5bf4SSatish Balay   int        ierr, i,bs2=baij->bs2;
633d6de1c52SSatish Balay   double     sum = 0.0;
634d6de1c52SSatish Balay   Scalar     *v;
635d6de1c52SSatish Balay 
636d64ed03dSBarry Smith   PetscFunctionBegin;
637d6de1c52SSatish Balay   if (baij->size == 1) {
638d6de1c52SSatish Balay     ierr =  MatNorm(baij->A,type,norm); CHKERRQ(ierr);
639d6de1c52SSatish Balay   } else {
640d6de1c52SSatish Balay     if (type == NORM_FROBENIUS) {
641d6de1c52SSatish Balay       v = amat->a;
642d6de1c52SSatish Balay       for (i=0; i<amat->nz*bs2; i++ ) {
6433a40ed3dSBarry Smith #if defined(USE_PETSC_COMPLEX)
644d6de1c52SSatish Balay         sum += real(conj(*v)*(*v)); v++;
645d6de1c52SSatish Balay #else
646d6de1c52SSatish Balay         sum += (*v)*(*v); v++;
647d6de1c52SSatish Balay #endif
648d6de1c52SSatish Balay       }
649d6de1c52SSatish Balay       v = bmat->a;
650d6de1c52SSatish Balay       for (i=0; i<bmat->nz*bs2; i++ ) {
6513a40ed3dSBarry Smith #if defined(USE_PETSC_COMPLEX)
652d6de1c52SSatish Balay         sum += real(conj(*v)*(*v)); v++;
653d6de1c52SSatish Balay #else
654d6de1c52SSatish Balay         sum += (*v)*(*v); v++;
655d6de1c52SSatish Balay #endif
656d6de1c52SSatish Balay       }
657ca161407SBarry Smith       ierr = MPI_Allreduce(&sum,norm,1,MPI_DOUBLE,MPI_SUM,mat->comm);CHKERRQ(ierr);
658d6de1c52SSatish Balay       *norm = sqrt(*norm);
659d64ed03dSBarry Smith     } else {
660e3372554SBarry Smith       SETERRQ(PETSC_ERR_SUP,0,"No support for this norm yet");
661d6de1c52SSatish Balay     }
662d64ed03dSBarry Smith   }
6633a40ed3dSBarry Smith   PetscFunctionReturn(0);
664d6de1c52SSatish Balay }
66557b952d6SSatish Balay 
6665615d1e5SSatish Balay #undef __FUNC__
6675615d1e5SSatish Balay #define __FUNC__ "MatAssemblyBegin_MPIBAIJ"
668ec1ea8d8SLois Curfman McInnes int MatAssemblyBegin_MPIBAIJ(Mat mat,MatAssemblyType mode)
66957b952d6SSatish Balay {
67057b952d6SSatish Balay   Mat_MPIBAIJ  *baij = (Mat_MPIBAIJ *) mat->data;
67157b952d6SSatish Balay   MPI_Comm    comm = mat->comm;
67257b952d6SSatish Balay   int         size = baij->size, *owners = baij->rowners,bs=baij->bs;
67357b952d6SSatish Balay   int         rank = baij->rank,tag = mat->tag, *owner,*starts,count,ierr;
67457b952d6SSatish Balay   MPI_Request *send_waits,*recv_waits;
67557b952d6SSatish Balay   int         *nprocs,i,j,idx,*procs,nsends,nreceives,nmax,*work;
67657b952d6SSatish Balay   InsertMode  addv;
67757b952d6SSatish Balay   Scalar      *rvalues,*svalues;
67857b952d6SSatish Balay 
679d64ed03dSBarry Smith   PetscFunctionBegin;
68057b952d6SSatish Balay   /* make sure all processors are either in INSERTMODE or ADDMODE */
681ca161407SBarry Smith   ierr = MPI_Allreduce(&mat->insertmode,&addv,1,MPI_INT,MPI_BOR,comm);CHKERRQ(ierr);
68257b952d6SSatish Balay   if (addv == (ADD_VALUES|INSERT_VALUES)) {
683a8c6a408SBarry Smith     SETERRQ(PETSC_ERR_ARG_WRONGSTATE,0,"Some processors inserted others added");
68457b952d6SSatish Balay   }
685e0fa3b82SLois Curfman McInnes   mat->insertmode = addv; /* in case this processor had no cache */
68657b952d6SSatish Balay 
68757b952d6SSatish Balay   /*  first count number of contributors to each processor */
68857b952d6SSatish Balay   nprocs = (int *) PetscMalloc( 2*size*sizeof(int) ); CHKPTRQ(nprocs);
68957b952d6SSatish Balay   PetscMemzero(nprocs,2*size*sizeof(int)); procs = nprocs + size;
69057b952d6SSatish Balay   owner = (int *) PetscMalloc( (baij->stash.n+1)*sizeof(int) ); CHKPTRQ(owner);
69157b952d6SSatish Balay   for ( i=0; i<baij->stash.n; i++ ) {
69257b952d6SSatish Balay     idx = baij->stash.idx[i];
69357b952d6SSatish Balay     for ( j=0; j<size; j++ ) {
69457b952d6SSatish Balay       if (idx >= owners[j]*bs && idx < owners[j+1]*bs) {
69557b952d6SSatish Balay         nprocs[j]++; procs[j] = 1; owner[i] = j; break;
69657b952d6SSatish Balay       }
69757b952d6SSatish Balay     }
69857b952d6SSatish Balay   }
69957b952d6SSatish Balay   nsends = 0;  for ( i=0; i<size; i++ ) { nsends += procs[i];}
70057b952d6SSatish Balay 
70157b952d6SSatish Balay   /* inform other processors of number of messages and max length*/
70257b952d6SSatish Balay   work      = (int *) PetscMalloc( size*sizeof(int) ); CHKPTRQ(work);
703ca161407SBarry Smith   ierr      = MPI_Allreduce(procs, work,size,MPI_INT,MPI_SUM,comm);CHKERRQ(ierr);
70457b952d6SSatish Balay   nreceives = work[rank];
705ca161407SBarry Smith   ierr      = MPI_Allreduce( nprocs, work,size,MPI_INT,MPI_MAX,comm);CHKERRQ(ierr);
70657b952d6SSatish Balay   nmax      = work[rank];
70757b952d6SSatish Balay   PetscFree(work);
70857b952d6SSatish Balay 
70957b952d6SSatish Balay   /* post receives:
71057b952d6SSatish Balay        1) each message will consist of ordered pairs
71157b952d6SSatish Balay      (global index,value) we store the global index as a double
71257b952d6SSatish Balay      to simplify the message passing.
71357b952d6SSatish Balay        2) since we don't know how long each individual message is we
71457b952d6SSatish Balay      allocate the largest needed buffer for each receive. Potentially
71557b952d6SSatish Balay      this is a lot of wasted space.
71657b952d6SSatish Balay 
71757b952d6SSatish Balay 
71857b952d6SSatish Balay        This could be done better.
71957b952d6SSatish Balay   */
720f8abc2e8SBarry Smith   rvalues = (Scalar *) PetscMalloc(3*(nreceives+1)*(nmax+1)*sizeof(Scalar));CHKPTRQ(rvalues);
721f8abc2e8SBarry Smith   recv_waits = (MPI_Request *) PetscMalloc((nreceives+1)*sizeof(MPI_Request));CHKPTRQ(recv_waits);
72257b952d6SSatish Balay   for ( i=0; i<nreceives; i++ ) {
723ca161407SBarry Smith     ierr = MPI_Irecv(rvalues+3*nmax*i,3*nmax,MPIU_SCALAR,MPI_ANY_SOURCE,tag,comm,recv_waits+i);CHKERRQ(ierr);
72457b952d6SSatish Balay   }
72557b952d6SSatish Balay 
72657b952d6SSatish Balay   /* do sends:
72757b952d6SSatish Balay       1) starts[i] gives the starting index in svalues for stuff going to
72857b952d6SSatish Balay          the ith processor
72957b952d6SSatish Balay   */
73057b952d6SSatish Balay   svalues = (Scalar *) PetscMalloc(3*(baij->stash.n+1)*sizeof(Scalar));CHKPTRQ(svalues);
731d64ed03dSBarry Smith   send_waits = (MPI_Request *) PetscMalloc((nsends+1)*sizeof(MPI_Request));CHKPTRQ(send_waits);
73257b952d6SSatish Balay   starts = (int *) PetscMalloc( size*sizeof(int) ); CHKPTRQ(starts);
73357b952d6SSatish Balay   starts[0] = 0;
73457b952d6SSatish Balay   for ( i=1; i<size; i++ ) { starts[i] = starts[i-1] + nprocs[i-1];}
73557b952d6SSatish Balay   for ( i=0; i<baij->stash.n; i++ ) {
73657b952d6SSatish Balay     svalues[3*starts[owner[i]]]       = (Scalar)  baij->stash.idx[i];
73757b952d6SSatish Balay     svalues[3*starts[owner[i]]+1]     = (Scalar)  baij->stash.idy[i];
73857b952d6SSatish Balay     svalues[3*(starts[owner[i]]++)+2] =  baij->stash.array[i];
73957b952d6SSatish Balay   }
74057b952d6SSatish Balay   PetscFree(owner);
74157b952d6SSatish Balay   starts[0] = 0;
74257b952d6SSatish Balay   for ( i=1; i<size; i++ ) { starts[i] = starts[i-1] + nprocs[i-1];}
74357b952d6SSatish Balay   count = 0;
74457b952d6SSatish Balay   for ( i=0; i<size; i++ ) {
74557b952d6SSatish Balay     if (procs[i]) {
746ca161407SBarry Smith       ierr = MPI_Isend(svalues+3*starts[i],3*nprocs[i],MPIU_SCALAR,i,tag,comm,send_waits+count++);CHKERRQ(ierr);
74757b952d6SSatish Balay     }
74857b952d6SSatish Balay   }
74957b952d6SSatish Balay   PetscFree(starts); PetscFree(nprocs);
75057b952d6SSatish Balay 
75157b952d6SSatish Balay   /* Free cache space */
752187ce0cbSSatish Balay   PLogInfo(0,"MatAssemblyBegin_MPIBAIJ:Number of off-processor values %d\n",baij->stash.n);
75357b952d6SSatish Balay   ierr = StashDestroy_Private(&baij->stash); CHKERRQ(ierr);
75457b952d6SSatish Balay 
75557b952d6SSatish Balay   baij->svalues    = svalues;    baij->rvalues    = rvalues;
75657b952d6SSatish Balay   baij->nsends     = nsends;     baij->nrecvs     = nreceives;
75757b952d6SSatish Balay   baij->send_waits = send_waits; baij->recv_waits = recv_waits;
75857b952d6SSatish Balay   baij->rmax       = nmax;
75957b952d6SSatish Balay 
7603a40ed3dSBarry Smith   PetscFunctionReturn(0);
76157b952d6SSatish Balay }
762bd7f49f5SSatish Balay 
763fef45726SSatish Balay /*
764fef45726SSatish Balay   Creates the hash table, and sets the table
765fef45726SSatish Balay   This table is created only once.
766fef45726SSatish Balay   If new entried need to be added to the matrix
767fef45726SSatish Balay   then the hash table has to be destroyed and
768fef45726SSatish Balay   recreated.
769fef45726SSatish Balay */
770fef45726SSatish Balay #undef __FUNC__
771fef45726SSatish Balay #define __FUNC__ "MatCreateHashTable_MPIBAIJ_Private"
772d0a41580SSatish Balay int MatCreateHashTable_MPIBAIJ_Private(Mat mat,double factor)
773596b8d2eSBarry Smith {
774596b8d2eSBarry Smith   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *) mat->data;
775596b8d2eSBarry Smith   Mat         A = baij->A, B=baij->B;
776596b8d2eSBarry Smith   Mat_SeqBAIJ *a=(Mat_SeqBAIJ *)A->data, *b=(Mat_SeqBAIJ *)B->data;
7770bdbc534SSatish Balay   int         i,j,k,nz=a->nz+b->nz,h1,*ai=a->i,*aj=a->j,*bi=b->i,*bj=b->j;
778*4a15367fSSatish Balay   int         size,bs2=baij->bs2,rstart=baij->rstart;
779187ce0cbSSatish Balay   int         cstart=baij->cstart,*garray=baij->garray,row,col,Nbs=baij->Nbs;
780fef45726SSatish Balay   int         *HT,key;
7810bdbc534SSatish Balay   Scalar      **HD;
782c2760754SSatish Balay   double      tmp;
783*4a15367fSSatish Balay #if defined(USE_PETSC_BOPT_g)
784*4a15367fSSatish Balay   int         ct=0,max=0;
785*4a15367fSSatish Balay #endif
786fef45726SSatish Balay 
787d64ed03dSBarry Smith   PetscFunctionBegin;
7880bdbc534SSatish Balay   baij->ht_size=(int)(factor*nz);
7890bdbc534SSatish Balay   size = baij->ht_size;
790fef45726SSatish Balay 
7910bdbc534SSatish Balay   if (baij->ht) {
7920bdbc534SSatish Balay     PetscFunctionReturn(0);
793596b8d2eSBarry Smith   }
7940bdbc534SSatish Balay 
795fef45726SSatish Balay   /* Allocate Memory for Hash Table */
796b9e4cc15SSatish Balay   baij->hd = (Scalar**)PetscMalloc((size)*(sizeof(int)+sizeof(Scalar*))+1); CHKPTRQ(baij->hd);
797b9e4cc15SSatish Balay   baij->ht = (int*)(baij->hd + size);
798b9e4cc15SSatish Balay   HD = baij->hd;
799a07cd24cSSatish Balay   HT = baij->ht;
800b9e4cc15SSatish Balay 
801b9e4cc15SSatish Balay 
802c2760754SSatish Balay   PetscMemzero(HD,size*(sizeof(int)+sizeof(Scalar*)));
8030bdbc534SSatish Balay 
804596b8d2eSBarry Smith 
805596b8d2eSBarry Smith   /* Loop Over A */
8060bdbc534SSatish Balay   for ( i=0; i<a->mbs; i++ ) {
807596b8d2eSBarry Smith     for ( j=ai[i]; j<ai[i+1]; j++ ) {
8080bdbc534SSatish Balay       row = i+rstart;
8090bdbc534SSatish Balay       col = aj[j]+cstart;
810596b8d2eSBarry Smith 
811187ce0cbSSatish Balay       key = row*Nbs + col + 1;
812c2760754SSatish Balay       h1  = HASH(size,key,tmp);
8130bdbc534SSatish Balay       for ( k=0; k<size; k++ ){
8140bdbc534SSatish Balay         if (HT[(h1+k)%size] == 0.0) {
8150bdbc534SSatish Balay           HT[(h1+k)%size] = key;
8160bdbc534SSatish Balay           HD[(h1+k)%size] = a->a + j*bs2;
817596b8d2eSBarry Smith           break;
818187ce0cbSSatish Balay #if defined(USE_PETSC_BOPT_g)
819187ce0cbSSatish Balay         } else {
820187ce0cbSSatish Balay           ct++;
821187ce0cbSSatish Balay #endif
822596b8d2eSBarry Smith         }
823187ce0cbSSatish Balay       }
824187ce0cbSSatish Balay #if defined(USE_PETSC_BOPT_g)
825187ce0cbSSatish Balay       if (k> max) max = k;
826187ce0cbSSatish Balay #endif
827596b8d2eSBarry Smith     }
828596b8d2eSBarry Smith   }
829596b8d2eSBarry Smith   /* Loop Over B */
8300bdbc534SSatish Balay   for ( i=0; i<b->mbs; i++ ) {
831596b8d2eSBarry Smith     for ( j=bi[i]; j<bi[i+1]; j++ ) {
8320bdbc534SSatish Balay       row = i+rstart;
8330bdbc534SSatish Balay       col = garray[bj[j]];
834187ce0cbSSatish Balay       key = row*Nbs + col + 1;
835c2760754SSatish Balay       h1  = HASH(size,key,tmp);
8360bdbc534SSatish Balay       for ( k=0; k<size; k++ ){
8370bdbc534SSatish Balay         if (HT[(h1+k)%size] == 0.0) {
8380bdbc534SSatish Balay           HT[(h1+k)%size] = key;
8390bdbc534SSatish Balay           HD[(h1+k)%size] = b->a + j*bs2;
840596b8d2eSBarry Smith           break;
841187ce0cbSSatish Balay #if defined(USE_PETSC_BOPT_g)
842187ce0cbSSatish Balay         } else {
843187ce0cbSSatish Balay           ct++;
844187ce0cbSSatish Balay #endif
845596b8d2eSBarry Smith         }
846187ce0cbSSatish Balay       }
847187ce0cbSSatish Balay #if defined(USE_PETSC_BOPT_g)
848187ce0cbSSatish Balay       if (k> max) max = k;
849187ce0cbSSatish Balay #endif
850596b8d2eSBarry Smith     }
851596b8d2eSBarry Smith   }
852596b8d2eSBarry Smith 
853596b8d2eSBarry Smith   /* Print Summary */
854187ce0cbSSatish Balay #if defined(USE_PETSC_BOPT_g)
855c2760754SSatish Balay   for ( i=0,j=0; i<size; i++)
856596b8d2eSBarry Smith     if (HT[i]) {j++;}
857187ce0cbSSatish Balay   PLogInfo(0,"MatCreateHashTable_MPIBAIJ_Private: Average Search = %5.2f,max search = %d\n",
858187ce0cbSSatish Balay            (j== 0)? 0.0:((double)(ct+j))/j,max);
859187ce0cbSSatish Balay #endif
8603a40ed3dSBarry Smith   PetscFunctionReturn(0);
861596b8d2eSBarry Smith }
86257b952d6SSatish Balay 
8635615d1e5SSatish Balay #undef __FUNC__
8645615d1e5SSatish Balay #define __FUNC__ "MatAssemblyEnd_MPIBAIJ"
865ec1ea8d8SLois Curfman McInnes int MatAssemblyEnd_MPIBAIJ(Mat mat,MatAssemblyType mode)
86657b952d6SSatish Balay {
86757b952d6SSatish Balay   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *) mat->data;
86857b952d6SSatish Balay   MPI_Status  *send_status,recv_status;
86957b952d6SSatish Balay   int         imdex,nrecvs = baij->nrecvs, count = nrecvs, i, n, ierr;
870596b8d2eSBarry Smith   int         bs=baij->bs,row,col,other_disassembled,flg;
87157b952d6SSatish Balay   Scalar      *values,val;
872e0fa3b82SLois Curfman McInnes   InsertMode  addv = mat->insertmode;
87357b952d6SSatish Balay 
874d64ed03dSBarry Smith   PetscFunctionBegin;
87557b952d6SSatish Balay   /*  wait on receives */
87657b952d6SSatish Balay   while (count) {
877ca161407SBarry Smith     ierr = MPI_Waitany(nrecvs,baij->recv_waits,&imdex,&recv_status);CHKERRQ(ierr);
87857b952d6SSatish Balay     /* unpack receives into our local space */
87957b952d6SSatish Balay     values = baij->rvalues + 3*imdex*baij->rmax;
880ca161407SBarry Smith     ierr = MPI_Get_count(&recv_status,MPIU_SCALAR,&n);CHKERRQ(ierr);
88157b952d6SSatish Balay     n = n/3;
88257b952d6SSatish Balay     for ( i=0; i<n; i++ ) {
88357b952d6SSatish Balay       row = (int) PetscReal(values[3*i]) - baij->rstart*bs;
88457b952d6SSatish Balay       col = (int) PetscReal(values[3*i+1]);
88557b952d6SSatish Balay       val = values[3*i+2];
88657b952d6SSatish Balay       if (col >= baij->cstart*bs && col < baij->cend*bs) {
88757b952d6SSatish Balay         col -= baij->cstart*bs;
8886fd7127cSSatish Balay         ierr = MatSetValues(baij->A,1,&row,1,&col,&val,addv); CHKERRQ(ierr)
889d64ed03dSBarry Smith       } else {
89057b952d6SSatish Balay         if (mat->was_assembled) {
891905e6a2fSBarry Smith           if (!baij->colmap) {
892905e6a2fSBarry Smith             ierr = CreateColmap_MPIBAIJ_Private(mat); CHKERRQ(ierr);
893905e6a2fSBarry Smith           }
894a5eb4965SSatish Balay           col = (baij->colmap[col/bs]) - 1 + col%bs;
89557b952d6SSatish Balay           if (col < 0  && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) {
89657b952d6SSatish Balay             ierr = DisAssemble_MPIBAIJ(mat); CHKERRQ(ierr);
89757b952d6SSatish Balay             col = (int) PetscReal(values[3*i+1]);
89857b952d6SSatish Balay           }
89957b952d6SSatish Balay         }
9006fd7127cSSatish Balay         ierr = MatSetValues(baij->B,1,&row,1,&col,&val,addv); CHKERRQ(ierr)
90157b952d6SSatish Balay       }
90257b952d6SSatish Balay     }
90357b952d6SSatish Balay     count--;
90457b952d6SSatish Balay   }
90557b952d6SSatish Balay   PetscFree(baij->recv_waits); PetscFree(baij->rvalues);
90657b952d6SSatish Balay 
90757b952d6SSatish Balay   /* wait on sends */
90857b952d6SSatish Balay   if (baij->nsends) {
909d64ed03dSBarry Smith     send_status = (MPI_Status *) PetscMalloc(baij->nsends*sizeof(MPI_Status));CHKPTRQ(send_status);
910ca161407SBarry Smith     ierr        = MPI_Waitall(baij->nsends,baij->send_waits,send_status);CHKERRQ(ierr);
91157b952d6SSatish Balay     PetscFree(send_status);
91257b952d6SSatish Balay   }
91357b952d6SSatish Balay   PetscFree(baij->send_waits); PetscFree(baij->svalues);
91457b952d6SSatish Balay 
91557b952d6SSatish Balay   ierr = MatAssemblyBegin(baij->A,mode); CHKERRQ(ierr);
91657b952d6SSatish Balay   ierr = MatAssemblyEnd(baij->A,mode); CHKERRQ(ierr);
91757b952d6SSatish Balay 
91857b952d6SSatish Balay   /* determine if any processor has disassembled, if so we must
91957b952d6SSatish Balay      also disassemble ourselfs, in order that we may reassemble. */
920ca161407SBarry Smith   ierr = MPI_Allreduce(&mat->was_assembled,&other_disassembled,1,MPI_INT,MPI_PROD,mat->comm);CHKERRQ(ierr);
92157b952d6SSatish Balay   if (mat->was_assembled && !other_disassembled) {
92257b952d6SSatish Balay     ierr = DisAssemble_MPIBAIJ(mat); CHKERRQ(ierr);
92357b952d6SSatish Balay   }
92457b952d6SSatish Balay 
9256d4a8577SBarry Smith   if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) {
92657b952d6SSatish Balay     ierr = MatSetUpMultiply_MPIBAIJ(mat); CHKERRQ(ierr);
92757b952d6SSatish Balay   }
92857b952d6SSatish Balay   ierr = MatAssemblyBegin(baij->B,mode); CHKERRQ(ierr);
92957b952d6SSatish Balay   ierr = MatAssemblyEnd(baij->B,mode); CHKERRQ(ierr);
93057b952d6SSatish Balay 
931187ce0cbSSatish Balay #if defined(USE_PETSC_BOPT_g)
932187ce0cbSSatish Balay   if (baij->ht && mode== MAT_FINAL_ASSEMBLY) {
933187ce0cbSSatish Balay     PLogInfo(0,"MatAssemblyEnd_MPIBAIJ:Average Hash Table Search in MatSetValues = %5.2f\n",
934187ce0cbSSatish Balay              ((double)baij->ht_total_ct)/baij->ht_insert_ct);
935187ce0cbSSatish Balay     baij->ht_total_ct  = 0;
936187ce0cbSSatish Balay     baij->ht_insert_ct = 0;
937187ce0cbSSatish Balay   }
938187ce0cbSSatish Balay #endif
939596b8d2eSBarry Smith   ierr = OptionsHasName(PETSC_NULL,"-use_hash",&flg); CHKERRQ(ierr);
94044e6884eSSatish Balay   if (flg && !baij->ht && mode== MAT_FINAL_ASSEMBLY) {
941a07cd24cSSatish Balay     double fact = 1.39;
942fef45726SSatish Balay     ierr = OptionsGetDouble(PETSC_NULL,"-use_hash",&fact,&flg); CHKERRQ(ierr);
943a74b47caSSatish Balay     if (fact <= 1.0) fact = 1.39;
944187ce0cbSSatish Balay     PLogInfo(0,"MatAssemblyEnd_MPIBAIJ:Hash table Factor used %5.2f\n",fact);
945fef45726SSatish Balay     ierr = MatCreateHashTable_MPIBAIJ_Private(mat,fact); CHKERRQ(ierr);
9460bdbc534SSatish Balay     mat->ops.setvalues        = MatSetValues_MPIBAIJ_HT;
9470bdbc534SSatish Balay     mat->ops.setvaluesblocked = MatSetValuesBlocked_MPIBAIJ_HT;
948bd7f49f5SSatish Balay   }
949187ce0cbSSatish Balay 
95057b952d6SSatish Balay   if (baij->rowvalues) {PetscFree(baij->rowvalues); baij->rowvalues = 0;}
9513a40ed3dSBarry Smith   PetscFunctionReturn(0);
95257b952d6SSatish Balay }
95357b952d6SSatish Balay 
9545615d1e5SSatish Balay #undef __FUNC__
9555615d1e5SSatish Balay #define __FUNC__ "MatView_MPIBAIJ_Binary"
95657b952d6SSatish Balay static int MatView_MPIBAIJ_Binary(Mat mat,Viewer viewer)
95757b952d6SSatish Balay {
95857b952d6SSatish Balay   Mat_MPIBAIJ  *baij = (Mat_MPIBAIJ *) mat->data;
95957b952d6SSatish Balay   int          ierr;
96057b952d6SSatish Balay 
961d64ed03dSBarry Smith   PetscFunctionBegin;
96257b952d6SSatish Balay   if (baij->size == 1) {
96357b952d6SSatish Balay     ierr = MatView(baij->A,viewer); CHKERRQ(ierr);
964a8c6a408SBarry Smith   } else SETERRQ(PETSC_ERR_SUP,0,"Only uniprocessor output supported");
9653a40ed3dSBarry Smith   PetscFunctionReturn(0);
96657b952d6SSatish Balay }
96757b952d6SSatish Balay 
9685615d1e5SSatish Balay #undef __FUNC__
9695615d1e5SSatish Balay #define __FUNC__ "MatView_MPIBAIJ_ASCIIorDraworMatlab"
97057b952d6SSatish Balay static int MatView_MPIBAIJ_ASCIIorDraworMatlab(Mat mat,Viewer viewer)
97157b952d6SSatish Balay {
97257b952d6SSatish Balay   Mat_MPIBAIJ  *baij = (Mat_MPIBAIJ *) mat->data;
973cee3aa6bSSatish Balay   int          ierr, format,rank,bs = baij->bs;
97457b952d6SSatish Balay   FILE         *fd;
97557b952d6SSatish Balay   ViewerType   vtype;
97657b952d6SSatish Balay 
977d64ed03dSBarry Smith   PetscFunctionBegin;
97857b952d6SSatish Balay   ierr = ViewerGetType(viewer,&vtype); CHKERRQ(ierr);
97957b952d6SSatish Balay   if (vtype  == ASCII_FILES_VIEWER || vtype == ASCII_FILE_VIEWER) {
98057b952d6SSatish Balay     ierr = ViewerGetFormat(viewer,&format);
981639f9d9dSBarry Smith     if (format == VIEWER_FORMAT_ASCII_INFO_LONG) {
9824e220ebcSLois Curfman McInnes       MatInfo info;
98357b952d6SSatish Balay       MPI_Comm_rank(mat->comm,&rank);
98457b952d6SSatish Balay       ierr = ViewerASCIIGetPointer(viewer,&fd); CHKERRQ(ierr);
9854e220ebcSLois Curfman McInnes       ierr = MatGetInfo(mat,MAT_LOCAL,&info);
98657b952d6SSatish Balay       PetscSequentialPhaseBegin(mat->comm,1);
98757b952d6SSatish Balay       fprintf(fd,"[%d] Local rows %d nz %d nz alloced %d bs %d mem %d\n",
9884e220ebcSLois Curfman McInnes               rank,baij->m,(int)info.nz_used*bs,(int)info.nz_allocated*bs,
9894e220ebcSLois Curfman McInnes               baij->bs,(int)info.memory);
9904e220ebcSLois Curfman McInnes       ierr = MatGetInfo(baij->A,MAT_LOCAL,&info);
9914e220ebcSLois Curfman McInnes       fprintf(fd,"[%d] on-diagonal part: nz %d \n",rank,(int)info.nz_used*bs);
9924e220ebcSLois Curfman McInnes       ierr = MatGetInfo(baij->B,MAT_LOCAL,&info);
9934e220ebcSLois Curfman McInnes       fprintf(fd,"[%d] off-diagonal part: nz %d \n",rank,(int)info.nz_used*bs);
99457b952d6SSatish Balay       fflush(fd);
99557b952d6SSatish Balay       PetscSequentialPhaseEnd(mat->comm,1);
99657b952d6SSatish Balay       ierr = VecScatterView(baij->Mvctx,viewer); CHKERRQ(ierr);
9973a40ed3dSBarry Smith       PetscFunctionReturn(0);
998d64ed03dSBarry Smith     } else if (format == VIEWER_FORMAT_ASCII_INFO) {
999bcc3fcf6SBarry Smith       PetscPrintf(mat->comm,"  block size is %d\n",bs);
10003a40ed3dSBarry Smith       PetscFunctionReturn(0);
100157b952d6SSatish Balay     }
100257b952d6SSatish Balay   }
100357b952d6SSatish Balay 
100457b952d6SSatish Balay   if (vtype == DRAW_VIEWER) {
100557b952d6SSatish Balay     Draw       draw;
100657b952d6SSatish Balay     PetscTruth isnull;
100757b952d6SSatish Balay     ierr = ViewerDrawGetDraw(viewer,&draw); CHKERRQ(ierr);
10083a40ed3dSBarry Smith     ierr = DrawIsNull(draw,&isnull); CHKERRQ(ierr); if (isnull) PetscFunctionReturn(0);
100957b952d6SSatish Balay   }
101057b952d6SSatish Balay 
101157b952d6SSatish Balay   if (vtype == ASCII_FILE_VIEWER) {
101257b952d6SSatish Balay     ierr = ViewerASCIIGetPointer(viewer,&fd); CHKERRQ(ierr);
101357b952d6SSatish Balay     PetscSequentialPhaseBegin(mat->comm,1);
101457b952d6SSatish Balay     fprintf(fd,"[%d] rows %d starts %d ends %d cols %d starts %d ends %d\n",
101557b952d6SSatish Balay            baij->rank,baij->m,baij->rstart*bs,baij->rend*bs,baij->n,
101657b952d6SSatish Balay             baij->cstart*bs,baij->cend*bs);
101757b952d6SSatish Balay     ierr = MatView(baij->A,viewer); CHKERRQ(ierr);
101857b952d6SSatish Balay     ierr = MatView(baij->B,viewer); CHKERRQ(ierr);
101957b952d6SSatish Balay     fflush(fd);
102057b952d6SSatish Balay     PetscSequentialPhaseEnd(mat->comm,1);
1021d64ed03dSBarry Smith   } else {
102257b952d6SSatish Balay     int size = baij->size;
102357b952d6SSatish Balay     rank = baij->rank;
102457b952d6SSatish Balay     if (size == 1) {
102557b952d6SSatish Balay       ierr = MatView(baij->A,viewer); CHKERRQ(ierr);
1026d64ed03dSBarry Smith     } else {
102757b952d6SSatish Balay       /* assemble the entire matrix onto first processor. */
102857b952d6SSatish Balay       Mat         A;
102957b952d6SSatish Balay       Mat_SeqBAIJ *Aloc;
103057b952d6SSatish Balay       int         M = baij->M, N = baij->N,*ai,*aj,row,col,i,j,k,*rvals;
103157b952d6SSatish Balay       int         mbs=baij->mbs;
103257b952d6SSatish Balay       Scalar      *a;
103357b952d6SSatish Balay 
103457b952d6SSatish Balay       if (!rank) {
103555843e3eSBarry Smith         ierr = MatCreateMPIBAIJ(mat->comm,baij->bs,M,N,M,N,0,PETSC_NULL,0,PETSC_NULL,&A);CHKERRQ(ierr);
1036d64ed03dSBarry Smith       } else {
103755843e3eSBarry Smith         ierr = MatCreateMPIBAIJ(mat->comm,baij->bs,0,0,M,N,0,PETSC_NULL,0,PETSC_NULL,&A);CHKERRQ(ierr);
103857b952d6SSatish Balay       }
103957b952d6SSatish Balay       PLogObjectParent(mat,A);
104057b952d6SSatish Balay 
104157b952d6SSatish Balay       /* copy over the A part */
104257b952d6SSatish Balay       Aloc = (Mat_SeqBAIJ*) baij->A->data;
104357b952d6SSatish Balay       ai = Aloc->i; aj = Aloc->j; a = Aloc->a;
104457b952d6SSatish Balay       row = baij->rstart;
104557b952d6SSatish Balay       rvals = (int *) PetscMalloc(bs*sizeof(int)); CHKPTRQ(rvals);
104657b952d6SSatish Balay 
104757b952d6SSatish Balay       for ( i=0; i<mbs; i++ ) {
104857b952d6SSatish Balay         rvals[0] = bs*(baij->rstart + i);
104957b952d6SSatish Balay         for ( j=1; j<bs; j++ ) { rvals[j] = rvals[j-1] + 1; }
105057b952d6SSatish Balay         for ( j=ai[i]; j<ai[i+1]; j++ ) {
105157b952d6SSatish Balay           col = (baij->cstart+aj[j])*bs;
105257b952d6SSatish Balay           for (k=0; k<bs; k++ ) {
1053cee3aa6bSSatish Balay             ierr = MatSetValues(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr);
1054cee3aa6bSSatish Balay             col++; a += bs;
105557b952d6SSatish Balay           }
105657b952d6SSatish Balay         }
105757b952d6SSatish Balay       }
105857b952d6SSatish Balay       /* copy over the B part */
105957b952d6SSatish Balay       Aloc = (Mat_SeqBAIJ*) baij->B->data;
106057b952d6SSatish Balay       ai = Aloc->i; aj = Aloc->j; a = Aloc->a;
106157b952d6SSatish Balay       row = baij->rstart*bs;
106257b952d6SSatish Balay       for ( i=0; i<mbs; i++ ) {
106357b952d6SSatish Balay         rvals[0] = bs*(baij->rstart + i);
106457b952d6SSatish Balay         for ( j=1; j<bs; j++ ) { rvals[j] = rvals[j-1] + 1; }
106557b952d6SSatish Balay         for ( j=ai[i]; j<ai[i+1]; j++ ) {
106657b952d6SSatish Balay           col = baij->garray[aj[j]]*bs;
106757b952d6SSatish Balay           for (k=0; k<bs; k++ ) {
1068cee3aa6bSSatish Balay             ierr = MatSetValues(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr);
1069cee3aa6bSSatish Balay             col++; a += bs;
107057b952d6SSatish Balay           }
107157b952d6SSatish Balay         }
107257b952d6SSatish Balay       }
107357b952d6SSatish Balay       PetscFree(rvals);
10746d4a8577SBarry Smith       ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY); CHKERRQ(ierr);
10756d4a8577SBarry Smith       ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY); CHKERRQ(ierr);
107655843e3eSBarry Smith       /*
107755843e3eSBarry Smith          Everyone has to call to draw the matrix since the graphics waits are
107855843e3eSBarry Smith          synchronized across all processors that share the Draw object
107955843e3eSBarry Smith       */
108055843e3eSBarry Smith       if (!rank || vtype == DRAW_VIEWER) {
108157b952d6SSatish Balay         ierr = MatView(((Mat_MPIBAIJ*)(A->data))->A,viewer); CHKERRQ(ierr);
108257b952d6SSatish Balay       }
108357b952d6SSatish Balay       ierr = MatDestroy(A); CHKERRQ(ierr);
108457b952d6SSatish Balay     }
108557b952d6SSatish Balay   }
10863a40ed3dSBarry Smith   PetscFunctionReturn(0);
108757b952d6SSatish Balay }
108857b952d6SSatish Balay 
108957b952d6SSatish Balay 
109057b952d6SSatish Balay 
10915615d1e5SSatish Balay #undef __FUNC__
10925615d1e5SSatish Balay #define __FUNC__ "MatView_MPIBAIJ"
1093ec1ea8d8SLois Curfman McInnes int MatView_MPIBAIJ(PetscObject obj,Viewer viewer)
109457b952d6SSatish Balay {
109557b952d6SSatish Balay   Mat         mat = (Mat) obj;
109657b952d6SSatish Balay   int         ierr;
109757b952d6SSatish Balay   ViewerType  vtype;
109857b952d6SSatish Balay 
1099d64ed03dSBarry Smith   PetscFunctionBegin;
110057b952d6SSatish Balay   ierr = ViewerGetType(viewer,&vtype); CHKERRQ(ierr);
110157b952d6SSatish Balay   if (vtype == ASCII_FILE_VIEWER || vtype == ASCII_FILES_VIEWER ||
110257b952d6SSatish Balay       vtype == DRAW_VIEWER       || vtype == MATLAB_VIEWER) {
110357b952d6SSatish Balay     ierr = MatView_MPIBAIJ_ASCIIorDraworMatlab(mat,viewer); CHKERRQ(ierr);
11043a40ed3dSBarry Smith   } else if (vtype == BINARY_FILE_VIEWER) {
11053a40ed3dSBarry Smith     ierr = MatView_MPIBAIJ_Binary(mat,viewer);CHKERRQ(ierr);
110657b952d6SSatish Balay   }
11073a40ed3dSBarry Smith   PetscFunctionReturn(0);
110857b952d6SSatish Balay }
110957b952d6SSatish Balay 
11105615d1e5SSatish Balay #undef __FUNC__
11115615d1e5SSatish Balay #define __FUNC__ "MatDestroy_MPIBAIJ"
1112ec1ea8d8SLois Curfman McInnes int MatDestroy_MPIBAIJ(PetscObject obj)
111379bdfe76SSatish Balay {
111479bdfe76SSatish Balay   Mat         mat = (Mat) obj;
111579bdfe76SSatish Balay   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *) mat->data;
111679bdfe76SSatish Balay   int         ierr;
111779bdfe76SSatish Balay 
1118d64ed03dSBarry Smith   PetscFunctionBegin;
11193a40ed3dSBarry Smith #if defined(USE_PETSC_LOG)
112079bdfe76SSatish Balay   PLogObjectState(obj,"Rows=%d, Cols=%d",baij->M,baij->N);
112179bdfe76SSatish Balay #endif
112279bdfe76SSatish Balay 
112383e2fdc7SBarry Smith   ierr = StashDestroy_Private(&baij->stash); CHKERRQ(ierr);
112479bdfe76SSatish Balay   PetscFree(baij->rowners);
112579bdfe76SSatish Balay   ierr = MatDestroy(baij->A); CHKERRQ(ierr);
112679bdfe76SSatish Balay   ierr = MatDestroy(baij->B); CHKERRQ(ierr);
112779bdfe76SSatish Balay   if (baij->colmap) PetscFree(baij->colmap);
112879bdfe76SSatish Balay   if (baij->garray) PetscFree(baij->garray);
112979bdfe76SSatish Balay   if (baij->lvec)   VecDestroy(baij->lvec);
113079bdfe76SSatish Balay   if (baij->Mvctx)  VecScatterDestroy(baij->Mvctx);
113179bdfe76SSatish Balay   if (baij->rowvalues) PetscFree(baij->rowvalues);
113230793edcSSatish Balay   if (baij->barray) PetscFree(baij->barray);
1133b9e4cc15SSatish Balay   if (baij->hd) PetscFree(baij->hd);
113479bdfe76SSatish Balay   PetscFree(baij);
113579bdfe76SSatish Balay   PLogObjectDestroy(mat);
113679bdfe76SSatish Balay   PetscHeaderDestroy(mat);
11373a40ed3dSBarry Smith   PetscFunctionReturn(0);
113879bdfe76SSatish Balay }
113979bdfe76SSatish Balay 
11405615d1e5SSatish Balay #undef __FUNC__
11415615d1e5SSatish Balay #define __FUNC__ "MatMult_MPIBAIJ"
1142ec1ea8d8SLois Curfman McInnes int MatMult_MPIBAIJ(Mat A,Vec xx,Vec yy)
1143cee3aa6bSSatish Balay {
1144cee3aa6bSSatish Balay   Mat_MPIBAIJ *a = (Mat_MPIBAIJ *) A->data;
114547b4a8eaSLois Curfman McInnes   int         ierr, nt;
1146cee3aa6bSSatish Balay 
1147d64ed03dSBarry Smith   PetscFunctionBegin;
1148c16cb8f2SBarry Smith   VecGetLocalSize_Fast(xx,nt);
114947b4a8eaSLois Curfman McInnes   if (nt != a->n) {
1150a8c6a408SBarry Smith     SETERRQ(PETSC_ERR_ARG_SIZ,0,"Incompatible partition of A and xx");
115147b4a8eaSLois Curfman McInnes   }
1152c16cb8f2SBarry Smith   VecGetLocalSize_Fast(yy,nt);
115347b4a8eaSLois Curfman McInnes   if (nt != a->m) {
1154a8c6a408SBarry Smith     SETERRQ(PETSC_ERR_ARG_SIZ,0,"Incompatible parition of A and yy");
115547b4a8eaSLois Curfman McInnes   }
115643a90d84SBarry Smith   ierr = VecScatterBegin(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr);
1157cee3aa6bSSatish Balay   ierr = (*a->A->ops.mult)(a->A,xx,yy); CHKERRQ(ierr);
115843a90d84SBarry Smith   ierr = VecScatterEnd(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr);
1159cee3aa6bSSatish Balay   ierr = (*a->B->ops.multadd)(a->B,a->lvec,yy,yy); CHKERRQ(ierr);
116043a90d84SBarry Smith   ierr = VecScatterPostRecvs(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr);
11613a40ed3dSBarry Smith   PetscFunctionReturn(0);
1162cee3aa6bSSatish Balay }
1163cee3aa6bSSatish Balay 
11645615d1e5SSatish Balay #undef __FUNC__
11655615d1e5SSatish Balay #define __FUNC__ "MatMultAdd_MPIBAIJ"
1166ec1ea8d8SLois Curfman McInnes int MatMultAdd_MPIBAIJ(Mat A,Vec xx,Vec yy,Vec zz)
1167cee3aa6bSSatish Balay {
1168cee3aa6bSSatish Balay   Mat_MPIBAIJ *a = (Mat_MPIBAIJ *) A->data;
1169cee3aa6bSSatish Balay   int        ierr;
1170d64ed03dSBarry Smith 
1171d64ed03dSBarry Smith   PetscFunctionBegin;
117243a90d84SBarry Smith   ierr = VecScatterBegin(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr);
1173cee3aa6bSSatish Balay   ierr = (*a->A->ops.multadd)(a->A,xx,yy,zz); CHKERRQ(ierr);
117443a90d84SBarry Smith   ierr = VecScatterEnd(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr);
1175cee3aa6bSSatish Balay   ierr = (*a->B->ops.multadd)(a->B,a->lvec,zz,zz); CHKERRQ(ierr);
11763a40ed3dSBarry Smith   PetscFunctionReturn(0);
1177cee3aa6bSSatish Balay }
1178cee3aa6bSSatish Balay 
11795615d1e5SSatish Balay #undef __FUNC__
11805615d1e5SSatish Balay #define __FUNC__ "MatMultTrans_MPIBAIJ"
1181ec1ea8d8SLois Curfman McInnes int MatMultTrans_MPIBAIJ(Mat A,Vec xx,Vec yy)
1182cee3aa6bSSatish Balay {
1183cee3aa6bSSatish Balay   Mat_MPIBAIJ *a = (Mat_MPIBAIJ *) A->data;
1184cee3aa6bSSatish Balay   int         ierr;
1185cee3aa6bSSatish Balay 
1186d64ed03dSBarry Smith   PetscFunctionBegin;
1187cee3aa6bSSatish Balay   /* do nondiagonal part */
1188cee3aa6bSSatish Balay   ierr = (*a->B->ops.multtrans)(a->B,xx,a->lvec); CHKERRQ(ierr);
1189cee3aa6bSSatish Balay   /* send it on its way */
1190537820f0SBarry Smith   ierr = VecScatterBegin(a->lvec,yy,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr);
1191cee3aa6bSSatish Balay   /* do local part */
1192cee3aa6bSSatish Balay   ierr = (*a->A->ops.multtrans)(a->A,xx,yy); CHKERRQ(ierr);
1193cee3aa6bSSatish Balay   /* receive remote parts: note this assumes the values are not actually */
1194cee3aa6bSSatish Balay   /* inserted in yy until the next line, which is true for my implementation*/
1195cee3aa6bSSatish Balay   /* but is not perhaps always true. */
1196639f9d9dSBarry Smith   ierr = VecScatterEnd(a->lvec,yy,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr);
11973a40ed3dSBarry Smith   PetscFunctionReturn(0);
1198cee3aa6bSSatish Balay }
1199cee3aa6bSSatish Balay 
12005615d1e5SSatish Balay #undef __FUNC__
12015615d1e5SSatish Balay #define __FUNC__ "MatMultTransAdd_MPIBAIJ"
1202ec1ea8d8SLois Curfman McInnes int MatMultTransAdd_MPIBAIJ(Mat A,Vec xx,Vec yy,Vec zz)
1203cee3aa6bSSatish Balay {
1204cee3aa6bSSatish Balay   Mat_MPIBAIJ *a = (Mat_MPIBAIJ *) A->data;
1205cee3aa6bSSatish Balay   int         ierr;
1206cee3aa6bSSatish Balay 
1207d64ed03dSBarry Smith   PetscFunctionBegin;
1208cee3aa6bSSatish Balay   /* do nondiagonal part */
1209cee3aa6bSSatish Balay   ierr = (*a->B->ops.multtrans)(a->B,xx,a->lvec); CHKERRQ(ierr);
1210cee3aa6bSSatish Balay   /* send it on its way */
1211537820f0SBarry Smith   ierr = VecScatterBegin(a->lvec,zz,ADD_VALUES,SCATTER_REVERSE,a->Mvctx); CHKERRQ(ierr);
1212cee3aa6bSSatish Balay   /* do local part */
1213cee3aa6bSSatish Balay   ierr = (*a->A->ops.multtransadd)(a->A,xx,yy,zz); CHKERRQ(ierr);
1214cee3aa6bSSatish Balay   /* receive remote parts: note this assumes the values are not actually */
1215cee3aa6bSSatish Balay   /* inserted in yy until the next line, which is true for my implementation*/
1216cee3aa6bSSatish Balay   /* but is not perhaps always true. */
1217537820f0SBarry Smith   ierr = VecScatterEnd(a->lvec,zz,ADD_VALUES,SCATTER_REVERSE,a->Mvctx); CHKERRQ(ierr);
12183a40ed3dSBarry Smith   PetscFunctionReturn(0);
1219cee3aa6bSSatish Balay }
1220cee3aa6bSSatish Balay 
1221cee3aa6bSSatish Balay /*
1222cee3aa6bSSatish Balay   This only works correctly for square matrices where the subblock A->A is the
1223cee3aa6bSSatish Balay    diagonal block
1224cee3aa6bSSatish Balay */
12255615d1e5SSatish Balay #undef __FUNC__
12265615d1e5SSatish Balay #define __FUNC__ "MatGetDiagonal_MPIBAIJ"
1227ec1ea8d8SLois Curfman McInnes int MatGetDiagonal_MPIBAIJ(Mat A,Vec v)
1228cee3aa6bSSatish Balay {
1229cee3aa6bSSatish Balay   Mat_MPIBAIJ *a = (Mat_MPIBAIJ *) A->data;
12303a40ed3dSBarry Smith   int         ierr;
1231d64ed03dSBarry Smith 
1232d64ed03dSBarry Smith   PetscFunctionBegin;
1233a8c6a408SBarry Smith   if (a->M != a->N) SETERRQ(PETSC_ERR_SUP,0,"Supports only square matrix where A->A is diag block");
12343a40ed3dSBarry Smith   ierr = MatGetDiagonal(a->A,v);CHKERRQ(ierr);
12353a40ed3dSBarry Smith   PetscFunctionReturn(0);
1236cee3aa6bSSatish Balay }
1237cee3aa6bSSatish Balay 
12385615d1e5SSatish Balay #undef __FUNC__
12395615d1e5SSatish Balay #define __FUNC__ "MatScale_MPIBAIJ"
1240ec1ea8d8SLois Curfman McInnes int MatScale_MPIBAIJ(Scalar *aa,Mat A)
1241cee3aa6bSSatish Balay {
1242cee3aa6bSSatish Balay   Mat_MPIBAIJ *a = (Mat_MPIBAIJ *) A->data;
1243cee3aa6bSSatish Balay   int         ierr;
1244d64ed03dSBarry Smith 
1245d64ed03dSBarry Smith   PetscFunctionBegin;
1246cee3aa6bSSatish Balay   ierr = MatScale(aa,a->A); CHKERRQ(ierr);
1247cee3aa6bSSatish Balay   ierr = MatScale(aa,a->B); CHKERRQ(ierr);
12483a40ed3dSBarry Smith   PetscFunctionReturn(0);
1249cee3aa6bSSatish Balay }
1250026e39d0SSatish Balay 
12515615d1e5SSatish Balay #undef __FUNC__
12525615d1e5SSatish Balay #define __FUNC__ "MatGetSize_MPIBAIJ"
1253ec1ea8d8SLois Curfman McInnes int MatGetSize_MPIBAIJ(Mat matin,int *m,int *n)
125457b952d6SSatish Balay {
125557b952d6SSatish Balay   Mat_MPIBAIJ *mat = (Mat_MPIBAIJ *) matin->data;
1256d64ed03dSBarry Smith 
1257d64ed03dSBarry Smith   PetscFunctionBegin;
1258bd7f49f5SSatish Balay   if (m) *m = mat->M;
1259bd7f49f5SSatish Balay   if (n) *n = mat->N;
12603a40ed3dSBarry Smith   PetscFunctionReturn(0);
126157b952d6SSatish Balay }
126257b952d6SSatish Balay 
12635615d1e5SSatish Balay #undef __FUNC__
12645615d1e5SSatish Balay #define __FUNC__ "MatGetLocalSize_MPIBAIJ"
1265ec1ea8d8SLois Curfman McInnes int MatGetLocalSize_MPIBAIJ(Mat matin,int *m,int *n)
126657b952d6SSatish Balay {
126757b952d6SSatish Balay   Mat_MPIBAIJ *mat = (Mat_MPIBAIJ *) matin->data;
1268d64ed03dSBarry Smith 
1269d64ed03dSBarry Smith   PetscFunctionBegin;
127057b952d6SSatish Balay   *m = mat->m; *n = mat->N;
12713a40ed3dSBarry Smith   PetscFunctionReturn(0);
127257b952d6SSatish Balay }
127357b952d6SSatish Balay 
12745615d1e5SSatish Balay #undef __FUNC__
12755615d1e5SSatish Balay #define __FUNC__ "MatGetOwnershipRange_MPIBAIJ"
1276ec1ea8d8SLois Curfman McInnes int MatGetOwnershipRange_MPIBAIJ(Mat matin,int *m,int *n)
127757b952d6SSatish Balay {
127857b952d6SSatish Balay   Mat_MPIBAIJ *mat = (Mat_MPIBAIJ *) matin->data;
1279d64ed03dSBarry Smith 
1280d64ed03dSBarry Smith   PetscFunctionBegin;
128157b952d6SSatish Balay   *m = mat->rstart*mat->bs; *n = mat->rend*mat->bs;
12823a40ed3dSBarry Smith   PetscFunctionReturn(0);
128357b952d6SSatish Balay }
128457b952d6SSatish Balay 
1285acdf5bf4SSatish Balay extern int MatGetRow_SeqBAIJ(Mat,int,int*,int**,Scalar**);
1286acdf5bf4SSatish Balay extern int MatRestoreRow_SeqBAIJ(Mat,int,int*,int**,Scalar**);
1287acdf5bf4SSatish Balay 
12885615d1e5SSatish Balay #undef __FUNC__
12895615d1e5SSatish Balay #define __FUNC__ "MatGetRow_MPIBAIJ"
1290acdf5bf4SSatish Balay int MatGetRow_MPIBAIJ(Mat matin,int row,int *nz,int **idx,Scalar **v)
1291acdf5bf4SSatish Balay {
1292acdf5bf4SSatish Balay   Mat_MPIBAIJ *mat = (Mat_MPIBAIJ *) matin->data;
1293acdf5bf4SSatish Balay   Scalar     *vworkA, *vworkB, **pvA, **pvB,*v_p;
1294acdf5bf4SSatish Balay   int        bs = mat->bs, bs2 = mat->bs2, i, ierr, *cworkA, *cworkB, **pcA, **pcB;
1295d9d09a02SSatish Balay   int        nztot, nzA, nzB, lrow, brstart = mat->rstart*bs, brend = mat->rend*bs;
1296d9d09a02SSatish Balay   int        *cmap, *idx_p,cstart = mat->cstart;
1297acdf5bf4SSatish Balay 
1298d64ed03dSBarry Smith   PetscFunctionBegin;
1299a8c6a408SBarry Smith   if (mat->getrowactive == PETSC_TRUE) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,0,"Already active");
1300acdf5bf4SSatish Balay   mat->getrowactive = PETSC_TRUE;
1301acdf5bf4SSatish Balay 
1302acdf5bf4SSatish Balay   if (!mat->rowvalues && (idx || v)) {
1303acdf5bf4SSatish Balay     /*
1304acdf5bf4SSatish Balay         allocate enough space to hold information from the longest row.
1305acdf5bf4SSatish Balay     */
1306acdf5bf4SSatish Balay     Mat_SeqBAIJ *Aa = (Mat_SeqBAIJ *) mat->A->data,*Ba = (Mat_SeqBAIJ *) mat->B->data;
1307bd16c2feSSatish Balay     int     max = 1,mbs = mat->mbs,tmp;
1308bd16c2feSSatish Balay     for ( i=0; i<mbs; i++ ) {
1309acdf5bf4SSatish Balay       tmp = Aa->i[i+1] - Aa->i[i] + Ba->i[i+1] - Ba->i[i];
1310acdf5bf4SSatish Balay       if (max < tmp) { max = tmp; }
1311acdf5bf4SSatish Balay     }
1312acdf5bf4SSatish Balay     mat->rowvalues = (Scalar *) PetscMalloc( max*bs2*(sizeof(int)+sizeof(Scalar)));
1313acdf5bf4SSatish Balay     CHKPTRQ(mat->rowvalues);
1314acdf5bf4SSatish Balay     mat->rowindices = (int *) (mat->rowvalues + max*bs2);
1315acdf5bf4SSatish Balay   }
1316acdf5bf4SSatish Balay 
1317a8c6a408SBarry Smith   if (row < brstart || row >= brend) SETERRQ(PETSC_ERR_SUP,0,"Only local rows")
1318d9d09a02SSatish Balay   lrow = row - brstart;
1319acdf5bf4SSatish Balay 
1320acdf5bf4SSatish Balay   pvA = &vworkA; pcA = &cworkA; pvB = &vworkB; pcB = &cworkB;
1321acdf5bf4SSatish Balay   if (!v)   {pvA = 0; pvB = 0;}
1322acdf5bf4SSatish Balay   if (!idx) {pcA = 0; if (!v) pcB = 0;}
1323acdf5bf4SSatish Balay   ierr = (*mat->A->ops.getrow)(mat->A,lrow,&nzA,pcA,pvA); CHKERRQ(ierr);
1324acdf5bf4SSatish Balay   ierr = (*mat->B->ops.getrow)(mat->B,lrow,&nzB,pcB,pvB); CHKERRQ(ierr);
1325acdf5bf4SSatish Balay   nztot = nzA + nzB;
1326acdf5bf4SSatish Balay 
1327acdf5bf4SSatish Balay   cmap  = mat->garray;
1328acdf5bf4SSatish Balay   if (v  || idx) {
1329acdf5bf4SSatish Balay     if (nztot) {
1330acdf5bf4SSatish Balay       /* Sort by increasing column numbers, assuming A and B already sorted */
1331acdf5bf4SSatish Balay       int imark = -1;
1332acdf5bf4SSatish Balay       if (v) {
1333acdf5bf4SSatish Balay         *v = v_p = mat->rowvalues;
1334acdf5bf4SSatish Balay         for ( i=0; i<nzB; i++ ) {
1335d9d09a02SSatish Balay           if (cmap[cworkB[i]/bs] < cstart)   v_p[i] = vworkB[i];
1336acdf5bf4SSatish Balay           else break;
1337acdf5bf4SSatish Balay         }
1338acdf5bf4SSatish Balay         imark = i;
1339acdf5bf4SSatish Balay         for ( i=0; i<nzA; i++ )     v_p[imark+i] = vworkA[i];
1340acdf5bf4SSatish Balay         for ( i=imark; i<nzB; i++ ) v_p[nzA+i]   = vworkB[i];
1341acdf5bf4SSatish Balay       }
1342acdf5bf4SSatish Balay       if (idx) {
1343acdf5bf4SSatish Balay         *idx = idx_p = mat->rowindices;
1344acdf5bf4SSatish Balay         if (imark > -1) {
1345acdf5bf4SSatish Balay           for ( i=0; i<imark; i++ ) {
1346bd16c2feSSatish Balay             idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs;
1347acdf5bf4SSatish Balay           }
1348acdf5bf4SSatish Balay         } else {
1349acdf5bf4SSatish Balay           for ( i=0; i<nzB; i++ ) {
1350d9d09a02SSatish Balay             if (cmap[cworkB[i]/bs] < cstart)
1351d9d09a02SSatish Balay               idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ;
1352acdf5bf4SSatish Balay             else break;
1353acdf5bf4SSatish Balay           }
1354acdf5bf4SSatish Balay           imark = i;
1355acdf5bf4SSatish Balay         }
1356d9d09a02SSatish Balay         for ( i=0; i<nzA; i++ )     idx_p[imark+i] = cstart*bs + cworkA[i];
1357d9d09a02SSatish Balay         for ( i=imark; i<nzB; i++ ) idx_p[nzA+i]   = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ;
1358acdf5bf4SSatish Balay       }
1359d64ed03dSBarry Smith     } else {
1360d212a18eSSatish Balay       if (idx) *idx = 0;
1361d212a18eSSatish Balay       if (v)   *v   = 0;
1362d212a18eSSatish Balay     }
1363acdf5bf4SSatish Balay   }
1364acdf5bf4SSatish Balay   *nz = nztot;
1365acdf5bf4SSatish Balay   ierr = (*mat->A->ops.restorerow)(mat->A,lrow,&nzA,pcA,pvA); CHKERRQ(ierr);
1366acdf5bf4SSatish Balay   ierr = (*mat->B->ops.restorerow)(mat->B,lrow,&nzB,pcB,pvB); CHKERRQ(ierr);
13673a40ed3dSBarry Smith   PetscFunctionReturn(0);
1368acdf5bf4SSatish Balay }
1369acdf5bf4SSatish Balay 
13705615d1e5SSatish Balay #undef __FUNC__
13715615d1e5SSatish Balay #define __FUNC__ "MatRestoreRow_MPIBAIJ"
1372acdf5bf4SSatish Balay int MatRestoreRow_MPIBAIJ(Mat mat,int row,int *nz,int **idx,Scalar **v)
1373acdf5bf4SSatish Balay {
1374acdf5bf4SSatish Balay   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *) mat->data;
1375d64ed03dSBarry Smith 
1376d64ed03dSBarry Smith   PetscFunctionBegin;
1377acdf5bf4SSatish Balay   if (baij->getrowactive == PETSC_FALSE) {
1378a8c6a408SBarry Smith     SETERRQ(PETSC_ERR_ARG_WRONGSTATE,0,"MatGetRow not called");
1379acdf5bf4SSatish Balay   }
1380acdf5bf4SSatish Balay   baij->getrowactive = PETSC_FALSE;
13813a40ed3dSBarry Smith   PetscFunctionReturn(0);
1382acdf5bf4SSatish Balay }
1383acdf5bf4SSatish Balay 
13845615d1e5SSatish Balay #undef __FUNC__
13855615d1e5SSatish Balay #define __FUNC__ "MatGetBlockSize_MPIBAIJ"
1386ec1ea8d8SLois Curfman McInnes int MatGetBlockSize_MPIBAIJ(Mat mat,int *bs)
13875a838052SSatish Balay {
13885a838052SSatish Balay   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *) mat->data;
1389d64ed03dSBarry Smith 
1390d64ed03dSBarry Smith   PetscFunctionBegin;
13915a838052SSatish Balay   *bs = baij->bs;
13923a40ed3dSBarry Smith   PetscFunctionReturn(0);
13935a838052SSatish Balay }
13945a838052SSatish Balay 
13955615d1e5SSatish Balay #undef __FUNC__
13965615d1e5SSatish Balay #define __FUNC__ "MatZeroEntries_MPIBAIJ"
1397ec1ea8d8SLois Curfman McInnes int MatZeroEntries_MPIBAIJ(Mat A)
139858667388SSatish Balay {
139958667388SSatish Balay   Mat_MPIBAIJ *l = (Mat_MPIBAIJ *) A->data;
140058667388SSatish Balay   int         ierr;
1401d64ed03dSBarry Smith 
1402d64ed03dSBarry Smith   PetscFunctionBegin;
140358667388SSatish Balay   ierr = MatZeroEntries(l->A); CHKERRQ(ierr);
140458667388SSatish Balay   ierr = MatZeroEntries(l->B); CHKERRQ(ierr);
14053a40ed3dSBarry Smith   PetscFunctionReturn(0);
140658667388SSatish Balay }
14070ac07820SSatish Balay 
14085615d1e5SSatish Balay #undef __FUNC__
14095615d1e5SSatish Balay #define __FUNC__ "MatGetInfo_MPIBAIJ"
1410ec1ea8d8SLois Curfman McInnes int MatGetInfo_MPIBAIJ(Mat matin,MatInfoType flag,MatInfo *info)
14110ac07820SSatish Balay {
14124e220ebcSLois Curfman McInnes   Mat_MPIBAIJ *a = (Mat_MPIBAIJ *) matin->data;
14134e220ebcSLois Curfman McInnes   Mat         A = a->A, B = a->B;
14147d57db60SLois Curfman McInnes   int         ierr;
14157d57db60SLois Curfman McInnes   double      isend[5], irecv[5];
14160ac07820SSatish Balay 
1417d64ed03dSBarry Smith   PetscFunctionBegin;
14184e220ebcSLois Curfman McInnes   info->block_size     = (double)a->bs;
14194e220ebcSLois Curfman McInnes   ierr = MatGetInfo(A,MAT_LOCAL,info); CHKERRQ(ierr);
14204e220ebcSLois Curfman McInnes   isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->memory;
14214e220ebcSLois Curfman McInnes   ierr = MatGetInfo(B,MAT_LOCAL,info); CHKERRQ(ierr);
14224e220ebcSLois Curfman McInnes   isend[0] += info->nz_used; isend[1] += info->nz_allocated; isend[2] += info->memory;
14230ac07820SSatish Balay   if (flag == MAT_LOCAL) {
14244e220ebcSLois Curfman McInnes     info->nz_used      = isend[0];
14254e220ebcSLois Curfman McInnes     info->nz_allocated = isend[1];
14264e220ebcSLois Curfman McInnes     info->nz_unneeded  = isend[2];
14274e220ebcSLois Curfman McInnes     info->memory       = isend[3];
14284e220ebcSLois Curfman McInnes     info->mallocs      = isend[4];
14290ac07820SSatish Balay   } else if (flag == MAT_GLOBAL_MAX) {
1430ca161407SBarry Smith     ierr = MPI_Allreduce(isend,irecv,5,MPI_INT,MPI_MAX,matin->comm);CHKERRQ(ierr);
14314e220ebcSLois Curfman McInnes     info->nz_used      = irecv[0];
14324e220ebcSLois Curfman McInnes     info->nz_allocated = irecv[1];
14334e220ebcSLois Curfman McInnes     info->nz_unneeded  = irecv[2];
14344e220ebcSLois Curfman McInnes     info->memory       = irecv[3];
14354e220ebcSLois Curfman McInnes     info->mallocs      = irecv[4];
14360ac07820SSatish Balay   } else if (flag == MAT_GLOBAL_SUM) {
1437ca161407SBarry Smith     ierr = MPI_Allreduce(isend,irecv,5,MPI_INT,MPI_SUM,matin->comm);CHKERRQ(ierr);
14384e220ebcSLois Curfman McInnes     info->nz_used      = irecv[0];
14394e220ebcSLois Curfman McInnes     info->nz_allocated = irecv[1];
14404e220ebcSLois Curfman McInnes     info->nz_unneeded  = irecv[2];
14414e220ebcSLois Curfman McInnes     info->memory       = irecv[3];
14424e220ebcSLois Curfman McInnes     info->mallocs      = irecv[4];
14430ac07820SSatish Balay   }
14445a5d4f66SBarry Smith   info->rows_global       = (double)a->M;
14455a5d4f66SBarry Smith   info->columns_global    = (double)a->N;
14465a5d4f66SBarry Smith   info->rows_local        = (double)a->m;
14475a5d4f66SBarry Smith   info->columns_local     = (double)a->N;
14484e220ebcSLois Curfman McInnes   info->fill_ratio_given  = 0; /* no parallel LU/ILU/Cholesky */
14494e220ebcSLois Curfman McInnes   info->fill_ratio_needed = 0;
14504e220ebcSLois Curfman McInnes   info->factor_mallocs    = 0;
14513a40ed3dSBarry Smith   PetscFunctionReturn(0);
14520ac07820SSatish Balay }
14530ac07820SSatish Balay 
14545615d1e5SSatish Balay #undef __FUNC__
14555615d1e5SSatish Balay #define __FUNC__ "MatSetOption_MPIBAIJ"
1456ec1ea8d8SLois Curfman McInnes int MatSetOption_MPIBAIJ(Mat A,MatOption op)
145758667388SSatish Balay {
145858667388SSatish Balay   Mat_MPIBAIJ *a = (Mat_MPIBAIJ *) A->data;
145958667388SSatish Balay 
1460d64ed03dSBarry Smith   PetscFunctionBegin;
146158667388SSatish Balay   if (op == MAT_NO_NEW_NONZERO_LOCATIONS ||
146258667388SSatish Balay       op == MAT_YES_NEW_NONZERO_LOCATIONS ||
14636da5968aSLois Curfman McInnes       op == MAT_COLUMNS_UNSORTED ||
1464c2653b3dSLois Curfman McInnes       op == MAT_COLUMNS_SORTED ||
146596854ed6SLois Curfman McInnes       op == MAT_NEW_NONZERO_ALLOCATION_ERROR ||
1466c2653b3dSLois Curfman McInnes       op == MAT_NEW_NONZERO_LOCATION_ERROR) {
1467b1fbbac0SLois Curfman McInnes         MatSetOption(a->A,op);
1468b1fbbac0SLois Curfman McInnes         MatSetOption(a->B,op);
1469b1fbbac0SLois Curfman McInnes   } else if (op == MAT_ROW_ORIENTED) {
1470aeafbbfcSLois Curfman McInnes         a->roworiented = 1;
147158667388SSatish Balay         MatSetOption(a->A,op);
147258667388SSatish Balay         MatSetOption(a->B,op);
1473b1fbbac0SLois Curfman McInnes   } else if (op == MAT_ROWS_SORTED ||
14746da5968aSLois Curfman McInnes              op == MAT_ROWS_UNSORTED ||
147558667388SSatish Balay              op == MAT_SYMMETRIC ||
147658667388SSatish Balay              op == MAT_STRUCTURALLY_SYMMETRIC ||
147758667388SSatish Balay              op == MAT_YES_NEW_DIAGONALS)
147858667388SSatish Balay     PLogInfo(A,"Info:MatSetOption_MPIBAIJ:Option ignored\n");
147958667388SSatish Balay   else if (op == MAT_COLUMN_ORIENTED) {
148058667388SSatish Balay     a->roworiented = 0;
148158667388SSatish Balay     MatSetOption(a->A,op);
148258667388SSatish Balay     MatSetOption(a->B,op);
14832b362799SSatish Balay   } else if (op == MAT_IGNORE_OFF_PROC_ENTRIES) {
148490f02eecSBarry Smith     a->donotstash = 1;
1485d64ed03dSBarry Smith   } else if (op == MAT_NO_NEW_DIAGONALS) {
1486d64ed03dSBarry Smith     SETERRQ(PETSC_ERR_SUP,0,"MAT_NO_NEW_DIAGONALS");
1487d64ed03dSBarry Smith   } else {
1488d64ed03dSBarry Smith     SETERRQ(PETSC_ERR_SUP,0,"unknown option");
1489d64ed03dSBarry Smith   }
14903a40ed3dSBarry Smith   PetscFunctionReturn(0);
149158667388SSatish Balay }
149258667388SSatish Balay 
14935615d1e5SSatish Balay #undef __FUNC__
14945615d1e5SSatish Balay #define __FUNC__ "MatTranspose_MPIBAIJ("
1495ec1ea8d8SLois Curfman McInnes int MatTranspose_MPIBAIJ(Mat A,Mat *matout)
14960ac07820SSatish Balay {
14970ac07820SSatish Balay   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *) A->data;
14980ac07820SSatish Balay   Mat_SeqBAIJ *Aloc;
14990ac07820SSatish Balay   Mat        B;
15000ac07820SSatish Balay   int        ierr,M=baij->M,N=baij->N,*ai,*aj,row,i,*rvals,j,k,col;
15010ac07820SSatish Balay   int        bs=baij->bs,mbs=baij->mbs;
15020ac07820SSatish Balay   Scalar     *a;
15030ac07820SSatish Balay 
1504d64ed03dSBarry Smith   PetscFunctionBegin;
1505a8c6a408SBarry Smith   if (matout == PETSC_NULL && M != N) SETERRQ(PETSC_ERR_ARG_SIZ,0,"Square matrix only for in-place");
15060ac07820SSatish Balay   ierr = MatCreateMPIBAIJ(A->comm,baij->bs,PETSC_DECIDE,PETSC_DECIDE,N,M,0,PETSC_NULL,0,PETSC_NULL,&B);
15070ac07820SSatish Balay   CHKERRQ(ierr);
15080ac07820SSatish Balay 
15090ac07820SSatish Balay   /* copy over the A part */
15100ac07820SSatish Balay   Aloc = (Mat_SeqBAIJ*) baij->A->data;
15110ac07820SSatish Balay   ai = Aloc->i; aj = Aloc->j; a = Aloc->a;
15120ac07820SSatish Balay   row = baij->rstart;
15130ac07820SSatish Balay   rvals = (int *) PetscMalloc(bs*sizeof(int)); CHKPTRQ(rvals);
15140ac07820SSatish Balay 
15150ac07820SSatish Balay   for ( i=0; i<mbs; i++ ) {
15160ac07820SSatish Balay     rvals[0] = bs*(baij->rstart + i);
15170ac07820SSatish Balay     for ( j=1; j<bs; j++ ) { rvals[j] = rvals[j-1] + 1; }
15180ac07820SSatish Balay     for ( j=ai[i]; j<ai[i+1]; j++ ) {
15190ac07820SSatish Balay       col = (baij->cstart+aj[j])*bs;
15200ac07820SSatish Balay       for (k=0; k<bs; k++ ) {
15210ac07820SSatish Balay         ierr = MatSetValues(B,1,&col,bs,rvals,a,INSERT_VALUES);CHKERRQ(ierr);
15220ac07820SSatish Balay         col++; a += bs;
15230ac07820SSatish Balay       }
15240ac07820SSatish Balay     }
15250ac07820SSatish Balay   }
15260ac07820SSatish Balay   /* copy over the B part */
15270ac07820SSatish Balay   Aloc = (Mat_SeqBAIJ*) baij->B->data;
15280ac07820SSatish Balay   ai = Aloc->i; aj = Aloc->j; a = Aloc->a;
15290ac07820SSatish Balay   row = baij->rstart*bs;
15300ac07820SSatish Balay   for ( i=0; i<mbs; i++ ) {
15310ac07820SSatish Balay     rvals[0] = bs*(baij->rstart + i);
15320ac07820SSatish Balay     for ( j=1; j<bs; j++ ) { rvals[j] = rvals[j-1] + 1; }
15330ac07820SSatish Balay     for ( j=ai[i]; j<ai[i+1]; j++ ) {
15340ac07820SSatish Balay       col = baij->garray[aj[j]]*bs;
15350ac07820SSatish Balay       for (k=0; k<bs; k++ ) {
15360ac07820SSatish Balay         ierr = MatSetValues(B,1,&col,bs,rvals,a,INSERT_VALUES);CHKERRQ(ierr);
15370ac07820SSatish Balay         col++; a += bs;
15380ac07820SSatish Balay       }
15390ac07820SSatish Balay     }
15400ac07820SSatish Balay   }
15410ac07820SSatish Balay   PetscFree(rvals);
15420ac07820SSatish Balay   ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY); CHKERRQ(ierr);
15430ac07820SSatish Balay   ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY); CHKERRQ(ierr);
15440ac07820SSatish Balay 
15450ac07820SSatish Balay   if (matout != PETSC_NULL) {
15460ac07820SSatish Balay     *matout = B;
15470ac07820SSatish Balay   } else {
15480ac07820SSatish Balay     /* This isn't really an in-place transpose .... but free data structures from baij */
15490ac07820SSatish Balay     PetscFree(baij->rowners);
15500ac07820SSatish Balay     ierr = MatDestroy(baij->A); CHKERRQ(ierr);
15510ac07820SSatish Balay     ierr = MatDestroy(baij->B); CHKERRQ(ierr);
15520ac07820SSatish Balay     if (baij->colmap) PetscFree(baij->colmap);
15530ac07820SSatish Balay     if (baij->garray) PetscFree(baij->garray);
15540ac07820SSatish Balay     if (baij->lvec) VecDestroy(baij->lvec);
15550ac07820SSatish Balay     if (baij->Mvctx) VecScatterDestroy(baij->Mvctx);
15560ac07820SSatish Balay     PetscFree(baij);
1557f09e8eb9SSatish Balay     PetscMemcpy(A,B,sizeof(struct _p_Mat));
15580ac07820SSatish Balay     PetscHeaderDestroy(B);
15590ac07820SSatish Balay   }
15603a40ed3dSBarry Smith   PetscFunctionReturn(0);
15610ac07820SSatish Balay }
15620e95ebc0SSatish Balay 
15635615d1e5SSatish Balay #undef __FUNC__
15645615d1e5SSatish Balay #define __FUNC__ "MatDiagonalScale_MPIBAIJ"
15650e95ebc0SSatish Balay int MatDiagonalScale_MPIBAIJ(Mat A,Vec ll,Vec rr)
15660e95ebc0SSatish Balay {
15670e95ebc0SSatish Balay   Mat a = ((Mat_MPIBAIJ *) A->data)->A;
15680e95ebc0SSatish Balay   Mat b = ((Mat_MPIBAIJ *) A->data)->B;
15690e95ebc0SSatish Balay   int ierr,s1,s2,s3;
15700e95ebc0SSatish Balay 
1571d64ed03dSBarry Smith   PetscFunctionBegin;
15720e95ebc0SSatish Balay   if (ll)  {
15730e95ebc0SSatish Balay     ierr = VecGetLocalSize(ll,&s1); CHKERRQ(ierr);
15740e95ebc0SSatish Balay     ierr = MatGetLocalSize(A,&s2,&s3); CHKERRQ(ierr);
1575a8c6a408SBarry Smith     if (s1!=s2) SETERRQ(PETSC_ERR_ARG_SIZ,0,"non-conforming local sizes");
15760e95ebc0SSatish Balay     ierr = MatDiagonalScale(a,ll,0); CHKERRQ(ierr);
15770e95ebc0SSatish Balay     ierr = MatDiagonalScale(b,ll,0); CHKERRQ(ierr);
15780e95ebc0SSatish Balay   }
1579a8c6a408SBarry Smith   if (rr) SETERRQ(PETSC_ERR_SUP,0,"not supported for right vector");
15803a40ed3dSBarry Smith   PetscFunctionReturn(0);
15810e95ebc0SSatish Balay }
15820e95ebc0SSatish Balay 
15835615d1e5SSatish Balay #undef __FUNC__
15845615d1e5SSatish Balay #define __FUNC__ "MatZeroRows_MPIBAIJ"
1585ec1ea8d8SLois Curfman McInnes int MatZeroRows_MPIBAIJ(Mat A,IS is,Scalar *diag)
15860ac07820SSatish Balay {
15870ac07820SSatish Balay   Mat_MPIBAIJ    *l = (Mat_MPIBAIJ *) A->data;
15880ac07820SSatish Balay   int            i,ierr,N, *rows,*owners = l->rowners,size = l->size;
1589a07cd24cSSatish Balay   int            *procs,*nprocs,j,found,idx,nsends,*work,row;
15900ac07820SSatish Balay   int            nmax,*svalues,*starts,*owner,nrecvs,rank = l->rank;
15910ac07820SSatish Balay   int            *rvalues,tag = A->tag,count,base,slen,n,*source;
1592a07cd24cSSatish Balay   int            *lens,imdex,*lrows,*values,bs=l->bs,rstart_bs=l->rstart_bs;
15930ac07820SSatish Balay   MPI_Comm       comm = A->comm;
15940ac07820SSatish Balay   MPI_Request    *send_waits,*recv_waits;
15950ac07820SSatish Balay   MPI_Status     recv_status,*send_status;
15960ac07820SSatish Balay   IS             istmp;
15970ac07820SSatish Balay 
1598d64ed03dSBarry Smith   PetscFunctionBegin;
15990ac07820SSatish Balay   ierr = ISGetSize(is,&N); CHKERRQ(ierr);
16000ac07820SSatish Balay   ierr = ISGetIndices(is,&rows); CHKERRQ(ierr);
16010ac07820SSatish Balay 
16020ac07820SSatish Balay   /*  first count number of contributors to each processor */
16030ac07820SSatish Balay   nprocs = (int *) PetscMalloc( 2*size*sizeof(int) ); CHKPTRQ(nprocs);
16040ac07820SSatish Balay   PetscMemzero(nprocs,2*size*sizeof(int)); procs = nprocs + size;
16050ac07820SSatish Balay   owner = (int *) PetscMalloc((N+1)*sizeof(int)); CHKPTRQ(owner); /* see note*/
16060ac07820SSatish Balay   for ( i=0; i<N; i++ ) {
16070ac07820SSatish Balay     idx = rows[i];
16080ac07820SSatish Balay     found = 0;
16090ac07820SSatish Balay     for ( j=0; j<size; j++ ) {
16100ac07820SSatish Balay       if (idx >= owners[j]*bs && idx < owners[j+1]*bs) {
16110ac07820SSatish Balay         nprocs[j]++; procs[j] = 1; owner[i] = j; found = 1; break;
16120ac07820SSatish Balay       }
16130ac07820SSatish Balay     }
1614a8c6a408SBarry Smith     if (!found) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Index out of range");
16150ac07820SSatish Balay   }
16160ac07820SSatish Balay   nsends = 0;  for ( i=0; i<size; i++ ) { nsends += procs[i];}
16170ac07820SSatish Balay 
16180ac07820SSatish Balay   /* inform other processors of number of messages and max length*/
16190ac07820SSatish Balay   work   = (int *) PetscMalloc( size*sizeof(int) ); CHKPTRQ(work);
1620ca161407SBarry Smith   ierr   = MPI_Allreduce( procs, work,size,MPI_INT,MPI_SUM,comm);CHKERRQ(ierr);
16210ac07820SSatish Balay   nrecvs = work[rank];
1622ca161407SBarry Smith   ierr   = MPI_Allreduce( nprocs, work,size,MPI_INT,MPI_MAX,comm);CHKERRQ(ierr);
16230ac07820SSatish Balay   nmax   = work[rank];
16240ac07820SSatish Balay   PetscFree(work);
16250ac07820SSatish Balay 
16260ac07820SSatish Balay   /* post receives:   */
1627d64ed03dSBarry Smith   rvalues = (int *) PetscMalloc((nrecvs+1)*(nmax+1)*sizeof(int)); CHKPTRQ(rvalues);
1628d64ed03dSBarry Smith   recv_waits = (MPI_Request *) PetscMalloc((nrecvs+1)*sizeof(MPI_Request));CHKPTRQ(recv_waits);
16290ac07820SSatish Balay   for ( i=0; i<nrecvs; i++ ) {
1630ca161407SBarry Smith     ierr = MPI_Irecv(rvalues+nmax*i,nmax,MPI_INT,MPI_ANY_SOURCE,tag,comm,recv_waits+i);CHKERRQ(ierr);
16310ac07820SSatish Balay   }
16320ac07820SSatish Balay 
16330ac07820SSatish Balay   /* do sends:
16340ac07820SSatish Balay      1) starts[i] gives the starting index in svalues for stuff going to
16350ac07820SSatish Balay      the ith processor
16360ac07820SSatish Balay   */
16370ac07820SSatish Balay   svalues = (int *) PetscMalloc( (N+1)*sizeof(int) ); CHKPTRQ(svalues);
1638ca161407SBarry Smith   send_waits = (MPI_Request *) PetscMalloc( (nsends+1)*sizeof(MPI_Request));CHKPTRQ(send_waits);
16390ac07820SSatish Balay   starts = (int *) PetscMalloc( (size+1)*sizeof(int) ); CHKPTRQ(starts);
16400ac07820SSatish Balay   starts[0] = 0;
16410ac07820SSatish Balay   for ( i=1; i<size; i++ ) { starts[i] = starts[i-1] + nprocs[i-1];}
16420ac07820SSatish Balay   for ( i=0; i<N; i++ ) {
16430ac07820SSatish Balay     svalues[starts[owner[i]]++] = rows[i];
16440ac07820SSatish Balay   }
16450ac07820SSatish Balay   ISRestoreIndices(is,&rows);
16460ac07820SSatish Balay 
16470ac07820SSatish Balay   starts[0] = 0;
16480ac07820SSatish Balay   for ( i=1; i<size+1; i++ ) { starts[i] = starts[i-1] + nprocs[i-1];}
16490ac07820SSatish Balay   count = 0;
16500ac07820SSatish Balay   for ( i=0; i<size; i++ ) {
16510ac07820SSatish Balay     if (procs[i]) {
1652ca161407SBarry Smith       ierr = MPI_Isend(svalues+starts[i],nprocs[i],MPI_INT,i,tag,comm,send_waits+count++);CHKERRQ(ierr);
16530ac07820SSatish Balay     }
16540ac07820SSatish Balay   }
16550ac07820SSatish Balay   PetscFree(starts);
16560ac07820SSatish Balay 
16570ac07820SSatish Balay   base = owners[rank]*bs;
16580ac07820SSatish Balay 
16590ac07820SSatish Balay   /*  wait on receives */
16600ac07820SSatish Balay   lens   = (int *) PetscMalloc( 2*(nrecvs+1)*sizeof(int) ); CHKPTRQ(lens);
16610ac07820SSatish Balay   source = lens + nrecvs;
16620ac07820SSatish Balay   count  = nrecvs; slen = 0;
16630ac07820SSatish Balay   while (count) {
1664ca161407SBarry Smith     ierr = MPI_Waitany(nrecvs,recv_waits,&imdex,&recv_status);CHKERRQ(ierr);
16650ac07820SSatish Balay     /* unpack receives into our local space */
1666ca161407SBarry Smith     ierr = MPI_Get_count(&recv_status,MPI_INT,&n);CHKERRQ(ierr);
16670ac07820SSatish Balay     source[imdex]  = recv_status.MPI_SOURCE;
16680ac07820SSatish Balay     lens[imdex]  = n;
16690ac07820SSatish Balay     slen += n;
16700ac07820SSatish Balay     count--;
16710ac07820SSatish Balay   }
16720ac07820SSatish Balay   PetscFree(recv_waits);
16730ac07820SSatish Balay 
16740ac07820SSatish Balay   /* move the data into the send scatter */
16750ac07820SSatish Balay   lrows = (int *) PetscMalloc( (slen+1)*sizeof(int) ); CHKPTRQ(lrows);
16760ac07820SSatish Balay   count = 0;
16770ac07820SSatish Balay   for ( i=0; i<nrecvs; i++ ) {
16780ac07820SSatish Balay     values = rvalues + i*nmax;
16790ac07820SSatish Balay     for ( j=0; j<lens[i]; j++ ) {
16800ac07820SSatish Balay       lrows[count++] = values[j] - base;
16810ac07820SSatish Balay     }
16820ac07820SSatish Balay   }
16830ac07820SSatish Balay   PetscFree(rvalues); PetscFree(lens);
16840ac07820SSatish Balay   PetscFree(owner); PetscFree(nprocs);
16850ac07820SSatish Balay 
16860ac07820SSatish Balay   /* actually zap the local rows */
1687029af93fSBarry Smith   ierr = ISCreateGeneral(PETSC_COMM_SELF,slen,lrows,&istmp);CHKERRQ(ierr);
16880ac07820SSatish Balay   PLogObjectParent(A,istmp);
1689a07cd24cSSatish Balay 
1690a07cd24cSSatish Balay   ierr = MatZeroRows(l->A,istmp,0); CHKERRQ(ierr);
16910ac07820SSatish Balay   ierr = MatZeroRows(l->B,istmp,0); CHKERRQ(ierr);
16920ac07820SSatish Balay   ierr = ISDestroy(istmp); CHKERRQ(ierr);
16930ac07820SSatish Balay 
1694a07cd24cSSatish Balay   if (diag) {
1695a07cd24cSSatish Balay     for ( i = 0; i < slen; i++ ) {
1696a07cd24cSSatish Balay       row = lrows[i] + rstart_bs;
1697a07cd24cSSatish Balay       ierr = MatSetValues(A,1,&row,1,&row,diag,INSERT_VALUES); CHKERRQ(ierr);
1698a07cd24cSSatish Balay     }
1699a07cd24cSSatish Balay     ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY); CHKERRQ(ierr);
1700a07cd24cSSatish Balay     ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY); CHKERRQ(ierr);
1701a07cd24cSSatish Balay   }
1702a07cd24cSSatish Balay   PetscFree(lrows);
1703a07cd24cSSatish Balay 
17040ac07820SSatish Balay   /* wait on sends */
17050ac07820SSatish Balay   if (nsends) {
1706d64ed03dSBarry Smith     send_status = (MPI_Status *) PetscMalloc(nsends*sizeof(MPI_Status));CHKPTRQ(send_status);
1707ca161407SBarry Smith     ierr        = MPI_Waitall(nsends,send_waits,send_status);CHKERRQ(ierr);
17080ac07820SSatish Balay     PetscFree(send_status);
17090ac07820SSatish Balay   }
17100ac07820SSatish Balay   PetscFree(send_waits); PetscFree(svalues);
17110ac07820SSatish Balay 
17123a40ed3dSBarry Smith   PetscFunctionReturn(0);
17130ac07820SSatish Balay }
1714ba4ca20aSSatish Balay extern int MatPrintHelp_SeqBAIJ(Mat);
17155615d1e5SSatish Balay #undef __FUNC__
17165615d1e5SSatish Balay #define __FUNC__ "MatPrintHelp_MPIBAIJ"
1717ec1ea8d8SLois Curfman McInnes int MatPrintHelp_MPIBAIJ(Mat A)
1718ba4ca20aSSatish Balay {
1719ba4ca20aSSatish Balay   Mat_MPIBAIJ *a   = (Mat_MPIBAIJ*) A->data;
17203a40ed3dSBarry Smith   int         ierr;
1721ba4ca20aSSatish Balay 
1722d64ed03dSBarry Smith   PetscFunctionBegin;
17233a40ed3dSBarry Smith   if (!a->rank) {
17243a40ed3dSBarry Smith     ierr = MatPrintHelp_SeqBAIJ(a->A);CHKERRQ(ierr);
17253a40ed3dSBarry Smith   }
17263a40ed3dSBarry Smith   PetscFunctionReturn(0);
1727ba4ca20aSSatish Balay }
17280ac07820SSatish Balay 
17295615d1e5SSatish Balay #undef __FUNC__
17305615d1e5SSatish Balay #define __FUNC__ "MatSetUnfactored_MPIBAIJ"
1731ec1ea8d8SLois Curfman McInnes int MatSetUnfactored_MPIBAIJ(Mat A)
1732bb5a7306SBarry Smith {
1733bb5a7306SBarry Smith   Mat_MPIBAIJ *a   = (Mat_MPIBAIJ*) A->data;
1734bb5a7306SBarry Smith   int         ierr;
1735d64ed03dSBarry Smith 
1736d64ed03dSBarry Smith   PetscFunctionBegin;
1737bb5a7306SBarry Smith   ierr = MatSetUnfactored(a->A); CHKERRQ(ierr);
17383a40ed3dSBarry Smith   PetscFunctionReturn(0);
1739bb5a7306SBarry Smith }
1740bb5a7306SBarry Smith 
17410ac07820SSatish Balay static int MatConvertSameType_MPIBAIJ(Mat,Mat *,int);
17420ac07820SSatish Balay 
174379bdfe76SSatish Balay /* -------------------------------------------------------------------*/
174479bdfe76SSatish Balay static struct _MatOps MatOps = {
1745bd16c2feSSatish Balay   MatSetValues_MPIBAIJ,MatGetRow_MPIBAIJ,MatRestoreRow_MPIBAIJ,MatMult_MPIBAIJ,
17464c50302cSBarry Smith   MatMultAdd_MPIBAIJ,MatMultTrans_MPIBAIJ,MatMultTransAdd_MPIBAIJ,0,
17474c50302cSBarry Smith   0,0,0,0,
17480ac07820SSatish Balay   0,0,MatTranspose_MPIBAIJ,MatGetInfo_MPIBAIJ,
17490e95ebc0SSatish Balay   0,MatGetDiagonal_MPIBAIJ,MatDiagonalScale_MPIBAIJ,MatNorm_MPIBAIJ,
175058667388SSatish Balay   MatAssemblyBegin_MPIBAIJ,MatAssemblyEnd_MPIBAIJ,0,MatSetOption_MPIBAIJ,
17514c50302cSBarry Smith   MatZeroEntries_MPIBAIJ,MatZeroRows_MPIBAIJ,0,
17524c50302cSBarry Smith   0,0,0,MatGetSize_MPIBAIJ,
17534c50302cSBarry Smith   MatGetLocalSize_MPIBAIJ,MatGetOwnershipRange_MPIBAIJ,0,0,
175494a9d846SBarry Smith   0,0,MatConvertSameType_MPIBAIJ,0,0,
1755d212a18eSSatish Balay   0,0,0,MatGetSubMatrices_MPIBAIJ,
1756ba4ca20aSSatish Balay   MatIncreaseOverlap_MPIBAIJ,MatGetValues_MPIBAIJ,0,MatPrintHelp_MPIBAIJ,
1757bb5a7306SBarry Smith   MatScale_MPIBAIJ,0,0,0,MatGetBlockSize_MPIBAIJ,
1758ab26458aSBarry Smith   0,0,0,0,0,0,MatSetUnfactored_MPIBAIJ,0,MatSetValuesBlocked_MPIBAIJ};
175979bdfe76SSatish Balay 
176079bdfe76SSatish Balay 
17615615d1e5SSatish Balay #undef __FUNC__
17625615d1e5SSatish Balay #define __FUNC__ "MatCreateMPIBAIJ"
176379bdfe76SSatish Balay /*@C
176479bdfe76SSatish Balay    MatCreateMPIBAIJ - Creates a sparse parallel matrix in block AIJ format
176579bdfe76SSatish Balay    (block compressed row).  For good matrix assembly performance
176679bdfe76SSatish Balay    the user should preallocate the matrix storage by setting the parameters
176779bdfe76SSatish Balay    d_nz (or d_nnz) and o_nz (or o_nnz).  By setting these parameters accurately,
176879bdfe76SSatish Balay    performance can be increased by more than a factor of 50.
176979bdfe76SSatish Balay 
177079bdfe76SSatish Balay    Input Parameters:
177179bdfe76SSatish Balay .  comm - MPI communicator
177279bdfe76SSatish Balay .  bs   - size of blockk
177379bdfe76SSatish Balay .  m - number of local rows (or PETSC_DECIDE to have calculated if M is given)
177492e8d321SLois Curfman McInnes            This value should be the same as the local size used in creating the
177592e8d321SLois Curfman McInnes            y vector for the matrix-vector product y = Ax.
177692e8d321SLois Curfman McInnes .  n - number of local columns (or PETSC_DECIDE to have calculated if N is given)
177792e8d321SLois Curfman McInnes            This value should be the same as the local size used in creating the
177892e8d321SLois Curfman McInnes            x vector for the matrix-vector product y = Ax.
177979bdfe76SSatish Balay .  M - number of global rows (or PETSC_DECIDE to have calculated if m is given)
178092e8d321SLois Curfman McInnes .  N - number of global columns (or PETSC_DECIDE to have calculated if n is given)
178179bdfe76SSatish Balay .  d_nz  - number of block nonzeros per block row in diagonal portion of local
178279bdfe76SSatish Balay            submatrix  (same for all local rows)
178392e8d321SLois Curfman McInnes .  d_nzz - array containing the number of block nonzeros in the various block rows
178492e8d321SLois Curfman McInnes            of the in diagonal portion of the local (possibly different for each block
178592e8d321SLois Curfman McInnes            row) or PETSC_NULL.  You must leave room for the diagonal entry even if
178692e8d321SLois Curfman McInnes            it is zero.
178792e8d321SLois Curfman McInnes .  o_nz  - number of block nonzeros per block row in the off-diagonal portion of local
178879bdfe76SSatish Balay            submatrix (same for all local rows).
178992e8d321SLois Curfman McInnes .  o_nzz - array containing the number of nonzeros in the various block rows of the
179092e8d321SLois Curfman McInnes            off-diagonal portion of the local submatrix (possibly different for
179192e8d321SLois Curfman McInnes            each block row) or PETSC_NULL.
179279bdfe76SSatish Balay 
179379bdfe76SSatish Balay    Output Parameter:
179479bdfe76SSatish Balay .  A - the matrix
179579bdfe76SSatish Balay 
179679bdfe76SSatish Balay    Notes:
179779bdfe76SSatish Balay    The user MUST specify either the local or global matrix dimensions
179879bdfe76SSatish Balay    (possibly both).
179979bdfe76SSatish Balay 
180079bdfe76SSatish Balay    Storage Information:
180179bdfe76SSatish Balay    For a square global matrix we define each processor's diagonal portion
180279bdfe76SSatish Balay    to be its local rows and the corresponding columns (a square submatrix);
180379bdfe76SSatish Balay    each processor's off-diagonal portion encompasses the remainder of the
180479bdfe76SSatish Balay    local matrix (a rectangular submatrix).
180579bdfe76SSatish Balay 
180679bdfe76SSatish Balay    The user can specify preallocated storage for the diagonal part of
180779bdfe76SSatish Balay    the local submatrix with either d_nz or d_nnz (not both).  Set
180879bdfe76SSatish Balay    d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic
180979bdfe76SSatish Balay    memory allocation.  Likewise, specify preallocated storage for the
181079bdfe76SSatish Balay    off-diagonal part of the local submatrix with o_nz or o_nnz (not both).
181179bdfe76SSatish Balay 
181279bdfe76SSatish Balay    Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
181379bdfe76SSatish Balay    the figure below we depict these three local rows and all columns (0-11).
181479bdfe76SSatish Balay 
181579bdfe76SSatish Balay $          0 1 2 3 4 5 6 7 8 9 10 11
181679bdfe76SSatish Balay $         -------------------
181779bdfe76SSatish Balay $  row 3  |  o o o d d d o o o o o o
181879bdfe76SSatish Balay $  row 4  |  o o o d d d o o o o o o
181979bdfe76SSatish Balay $  row 5  |  o o o d d d o o o o o o
182079bdfe76SSatish Balay $         -------------------
182179bdfe76SSatish Balay $
182279bdfe76SSatish Balay 
182379bdfe76SSatish Balay    Thus, any entries in the d locations are stored in the d (diagonal)
182479bdfe76SSatish Balay    submatrix, and any entries in the o locations are stored in the
182579bdfe76SSatish Balay    o (off-diagonal) submatrix.  Note that the d and the o submatrices are
182657b952d6SSatish Balay    stored simply in the MATSEQBAIJ format for compressed row storage.
182779bdfe76SSatish Balay 
1828d64ed03dSBarry Smith    Now d_nz should indicate the number of block nonzeros per row in the d matrix,
1829d64ed03dSBarry Smith    and o_nz should indicate the number of block nonzeros per row in the o matrix.
183079bdfe76SSatish Balay    In general, for PDE problems in which most nonzeros are near the diagonal,
183192e8d321SLois Curfman McInnes    one expects d_nz >> o_nz.   For large problems you MUST preallocate memory
183292e8d321SLois Curfman McInnes    or you will get TERRIBLE performance; see the users' manual chapter on
18336da5968aSLois Curfman McInnes    matrices.
183479bdfe76SSatish Balay 
183592e8d321SLois Curfman McInnes .keywords: matrix, block, aij, compressed row, sparse, parallel
183679bdfe76SSatish Balay 
183779bdfe76SSatish Balay .seealso: MatCreate(), MatCreateSeqBAIJ(), MatSetValues()
183879bdfe76SSatish Balay @*/
183979bdfe76SSatish Balay int MatCreateMPIBAIJ(MPI_Comm comm,int bs,int m,int n,int M,int N,
184079bdfe76SSatish Balay                     int d_nz,int *d_nnz,int o_nz,int *o_nnz,Mat *A)
184179bdfe76SSatish Balay {
184279bdfe76SSatish Balay   Mat          B;
184379bdfe76SSatish Balay   Mat_MPIBAIJ  *b;
18444c50302cSBarry Smith   int          ierr, i,sum[2],work[2],mbs,nbs,Mbs=PETSC_DECIDE,Nbs=PETSC_DECIDE,size;
184579bdfe76SSatish Balay 
1846d64ed03dSBarry Smith   PetscFunctionBegin;
1847a8c6a408SBarry Smith   if (bs < 1) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Invalid block size specified, must be positive");
18483914022bSBarry Smith 
18493914022bSBarry Smith   MPI_Comm_size(comm,&size);
18503914022bSBarry Smith   if (size == 1) {
18513914022bSBarry Smith     if (M == PETSC_DECIDE) M = m;
18523914022bSBarry Smith     if (N == PETSC_DECIDE) N = n;
18533914022bSBarry Smith     ierr = MatCreateSeqBAIJ(comm,bs,M,N,d_nz,d_nnz,A); CHKERRQ(ierr);
18543a40ed3dSBarry Smith     PetscFunctionReturn(0);
18553914022bSBarry Smith   }
18563914022bSBarry Smith 
185779bdfe76SSatish Balay   *A = 0;
1858d4bb536fSBarry Smith   PetscHeaderCreate(B,_p_Mat,MAT_COOKIE,MATMPIBAIJ,comm,MatDestroy,MatView);
185979bdfe76SSatish Balay   PLogObjectCreate(B);
186079bdfe76SSatish Balay   B->data       = (void *) (b = PetscNew(Mat_MPIBAIJ)); CHKPTRQ(b);
186179bdfe76SSatish Balay   PetscMemzero(b,sizeof(Mat_MPIBAIJ));
186279bdfe76SSatish Balay   PetscMemcpy(&B->ops,&MatOps,sizeof(struct _MatOps));
18634c50302cSBarry Smith 
186479bdfe76SSatish Balay   B->destroy    = MatDestroy_MPIBAIJ;
186579bdfe76SSatish Balay   B->view       = MatView_MPIBAIJ;
186690f02eecSBarry Smith   B->mapping    = 0;
186779bdfe76SSatish Balay   B->factor     = 0;
186879bdfe76SSatish Balay   B->assembled  = PETSC_FALSE;
186979bdfe76SSatish Balay 
1870e0fa3b82SLois Curfman McInnes   B->insertmode = NOT_SET_VALUES;
187179bdfe76SSatish Balay   MPI_Comm_rank(comm,&b->rank);
187279bdfe76SSatish Balay   MPI_Comm_size(comm,&b->size);
187379bdfe76SSatish Balay 
1874d64ed03dSBarry Smith   if ( m == PETSC_DECIDE && (d_nnz != PETSC_NULL || o_nnz != PETSC_NULL)) {
1875a8c6a408SBarry Smith     SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Cannot have PETSC_DECIDE rows but set d_nnz or o_nnz");
1876d64ed03dSBarry Smith   }
1877a8c6a408SBarry Smith   if ( M == PETSC_DECIDE && m == PETSC_DECIDE) {
1878a8c6a408SBarry Smith     SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"either M or m should be specified");
1879a8c6a408SBarry Smith   }
1880a8c6a408SBarry Smith   if ( N == PETSC_DECIDE && n == PETSC_DECIDE) {
1881a8c6a408SBarry Smith     SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"either N or n should be specified");
1882a8c6a408SBarry Smith   }
1883cee3aa6bSSatish Balay   if ( M != PETSC_DECIDE && m != PETSC_DECIDE) M = PETSC_DECIDE;
1884cee3aa6bSSatish Balay   if ( N != PETSC_DECIDE && n != PETSC_DECIDE) N = PETSC_DECIDE;
188579bdfe76SSatish Balay 
188679bdfe76SSatish Balay   if (M == PETSC_DECIDE || N == PETSC_DECIDE) {
188779bdfe76SSatish Balay     work[0] = m; work[1] = n;
188879bdfe76SSatish Balay     mbs = m/bs; nbs = n/bs;
1889ca161407SBarry Smith     ierr = MPI_Allreduce( work, sum,2,MPI_INT,MPI_SUM,comm );CHKERRQ(ierr);
189079bdfe76SSatish Balay     if (M == PETSC_DECIDE) {M = sum[0]; Mbs = M/bs;}
189179bdfe76SSatish Balay     if (N == PETSC_DECIDE) {N = sum[1]; Nbs = N/bs;}
189279bdfe76SSatish Balay   }
189379bdfe76SSatish Balay   if (m == PETSC_DECIDE) {
189479bdfe76SSatish Balay     Mbs = M/bs;
1895a8c6a408SBarry Smith     if (Mbs*bs != M) SETERRQ(PETSC_ERR_ARG_SIZ,0,"No of global rows must be divisible by blocksize");
189679bdfe76SSatish Balay     mbs = Mbs/b->size + ((Mbs % b->size) > b->rank);
189779bdfe76SSatish Balay     m   = mbs*bs;
189879bdfe76SSatish Balay   }
189979bdfe76SSatish Balay   if (n == PETSC_DECIDE) {
190079bdfe76SSatish Balay     Nbs = N/bs;
1901a8c6a408SBarry Smith     if (Nbs*bs != N) SETERRQ(PETSC_ERR_ARG_SIZ,0,"No of global cols must be divisible by blocksize");
190279bdfe76SSatish Balay     nbs = Nbs/b->size + ((Nbs % b->size) > b->rank);
190379bdfe76SSatish Balay     n   = nbs*bs;
190479bdfe76SSatish Balay   }
1905a8c6a408SBarry Smith   if (mbs*bs != m || nbs*bs != n) {
1906a8c6a408SBarry Smith     SETERRQ(PETSC_ERR_ARG_SIZ,0,"No of local rows, cols must be divisible by blocksize");
1907a8c6a408SBarry Smith   }
190879bdfe76SSatish Balay 
190979bdfe76SSatish Balay   b->m = m; B->m = m;
191079bdfe76SSatish Balay   b->n = n; B->n = n;
191179bdfe76SSatish Balay   b->N = N; B->N = N;
191279bdfe76SSatish Balay   b->M = M; B->M = M;
191379bdfe76SSatish Balay   b->bs  = bs;
191479bdfe76SSatish Balay   b->bs2 = bs*bs;
191579bdfe76SSatish Balay   b->mbs = mbs;
191679bdfe76SSatish Balay   b->nbs = nbs;
191779bdfe76SSatish Balay   b->Mbs = Mbs;
191879bdfe76SSatish Balay   b->Nbs = Nbs;
191979bdfe76SSatish Balay 
192079bdfe76SSatish Balay   /* build local table of row and column ownerships */
192179bdfe76SSatish Balay   b->rowners = (int *) PetscMalloc(2*(b->size+2)*sizeof(int)); CHKPTRQ(b->rowners);
1922f09e8eb9SSatish Balay   PLogObjectMemory(B,2*(b->size+2)*sizeof(int)+sizeof(struct _p_Mat)+sizeof(Mat_MPIBAIJ));
19230ac07820SSatish Balay   b->cowners = b->rowners + b->size + 2;
1924ca161407SBarry Smith   ierr = MPI_Allgather(&mbs,1,MPI_INT,b->rowners+1,1,MPI_INT,comm);CHKERRQ(ierr);
192579bdfe76SSatish Balay   b->rowners[0] = 0;
192679bdfe76SSatish Balay   for ( i=2; i<=b->size; i++ ) {
192779bdfe76SSatish Balay     b->rowners[i] += b->rowners[i-1];
192879bdfe76SSatish Balay   }
192979bdfe76SSatish Balay   b->rstart    = b->rowners[b->rank];
193079bdfe76SSatish Balay   b->rend      = b->rowners[b->rank+1];
19314fa0d573SSatish Balay   b->rstart_bs = b->rstart * bs;
19324fa0d573SSatish Balay   b->rend_bs   = b->rend * bs;
19334fa0d573SSatish Balay 
1934ca161407SBarry Smith   ierr = MPI_Allgather(&nbs,1,MPI_INT,b->cowners+1,1,MPI_INT,comm);CHKERRQ(ierr);
193579bdfe76SSatish Balay   b->cowners[0] = 0;
193679bdfe76SSatish Balay   for ( i=2; i<=b->size; i++ ) {
193779bdfe76SSatish Balay     b->cowners[i] += b->cowners[i-1];
193879bdfe76SSatish Balay   }
193979bdfe76SSatish Balay   b->cstart    = b->cowners[b->rank];
194079bdfe76SSatish Balay   b->cend      = b->cowners[b->rank+1];
19414fa0d573SSatish Balay   b->cstart_bs = b->cstart * bs;
19424fa0d573SSatish Balay   b->cend_bs   = b->cend * bs;
194379bdfe76SSatish Balay 
1944a07cd24cSSatish Balay 
194579bdfe76SSatish Balay   if (d_nz == PETSC_DEFAULT) d_nz = 5;
1946029af93fSBarry Smith   ierr = MatCreateSeqBAIJ(PETSC_COMM_SELF,bs,m,n,d_nz,d_nnz,&b->A); CHKERRQ(ierr);
194779bdfe76SSatish Balay   PLogObjectParent(B,b->A);
194879bdfe76SSatish Balay   if (o_nz == PETSC_DEFAULT) o_nz = 0;
1949029af93fSBarry Smith   ierr = MatCreateSeqBAIJ(PETSC_COMM_SELF,bs,m,N,o_nz,o_nnz,&b->B); CHKERRQ(ierr);
195079bdfe76SSatish Balay   PLogObjectParent(B,b->B);
195179bdfe76SSatish Balay 
195279bdfe76SSatish Balay   /* build cache for off array entries formed */
195379bdfe76SSatish Balay   ierr = StashBuild_Private(&b->stash); CHKERRQ(ierr);
195490f02eecSBarry Smith   b->donotstash  = 0;
195579bdfe76SSatish Balay   b->colmap      = 0;
195679bdfe76SSatish Balay   b->garray      = 0;
195779bdfe76SSatish Balay   b->roworiented = 1;
195879bdfe76SSatish Balay 
195930793edcSSatish Balay   /* stuff used in block assembly */
196030793edcSSatish Balay   b->barray       = 0;
196130793edcSSatish Balay 
196279bdfe76SSatish Balay   /* stuff used for matrix vector multiply */
196379bdfe76SSatish Balay   b->lvec         = 0;
196479bdfe76SSatish Balay   b->Mvctx        = 0;
196579bdfe76SSatish Balay 
196679bdfe76SSatish Balay   /* stuff for MatGetRow() */
196779bdfe76SSatish Balay   b->rowindices   = 0;
196879bdfe76SSatish Balay   b->rowvalues    = 0;
196979bdfe76SSatish Balay   b->getrowactive = PETSC_FALSE;
197079bdfe76SSatish Balay 
1971a07cd24cSSatish Balay   /* hash table stuff */
1972a07cd24cSSatish Balay   b->ht           = 0;
1973187ce0cbSSatish Balay   b->hd           = 0;
19740bdbc534SSatish Balay   b->ht_size      = 0;
1975187ce0cbSSatish Balay   b->ht_total_ct  = 0;
1976187ce0cbSSatish Balay   b->ht_insert_ct = 0;
1977a07cd24cSSatish Balay 
197879bdfe76SSatish Balay   *A = B;
19793a40ed3dSBarry Smith   PetscFunctionReturn(0);
198079bdfe76SSatish Balay }
1981026e39d0SSatish Balay 
19825615d1e5SSatish Balay #undef __FUNC__
19835615d1e5SSatish Balay #define __FUNC__ "MatConvertSameType_MPIBAIJ"
19840ac07820SSatish Balay static int MatConvertSameType_MPIBAIJ(Mat matin,Mat *newmat,int cpvalues)
19850ac07820SSatish Balay {
19860ac07820SSatish Balay   Mat         mat;
19870ac07820SSatish Balay   Mat_MPIBAIJ *a,*oldmat = (Mat_MPIBAIJ *) matin->data;
19880ac07820SSatish Balay   int         ierr, len=0, flg;
19890ac07820SSatish Balay 
1990d64ed03dSBarry Smith   PetscFunctionBegin;
19910ac07820SSatish Balay   *newmat       = 0;
1992d4bb536fSBarry Smith   PetscHeaderCreate(mat,_p_Mat,MAT_COOKIE,MATMPIBAIJ,matin->comm,MatDestroy,MatView);
19930ac07820SSatish Balay   PLogObjectCreate(mat);
19940ac07820SSatish Balay   mat->data       = (void *) (a = PetscNew(Mat_MPIBAIJ)); CHKPTRQ(a);
19950ac07820SSatish Balay   PetscMemcpy(&mat->ops,&MatOps,sizeof(struct _MatOps));
19960ac07820SSatish Balay   mat->destroy    = MatDestroy_MPIBAIJ;
19970ac07820SSatish Balay   mat->view       = MatView_MPIBAIJ;
19980ac07820SSatish Balay   mat->factor     = matin->factor;
19990ac07820SSatish Balay   mat->assembled  = PETSC_TRUE;
20000ac07820SSatish Balay 
20010ac07820SSatish Balay   a->m = mat->m   = oldmat->m;
20020ac07820SSatish Balay   a->n = mat->n   = oldmat->n;
20030ac07820SSatish Balay   a->M = mat->M   = oldmat->M;
20040ac07820SSatish Balay   a->N = mat->N   = oldmat->N;
20050ac07820SSatish Balay 
20060ac07820SSatish Balay   a->bs  = oldmat->bs;
20070ac07820SSatish Balay   a->bs2 = oldmat->bs2;
20080ac07820SSatish Balay   a->mbs = oldmat->mbs;
20090ac07820SSatish Balay   a->nbs = oldmat->nbs;
20100ac07820SSatish Balay   a->Mbs = oldmat->Mbs;
20110ac07820SSatish Balay   a->Nbs = oldmat->Nbs;
20120ac07820SSatish Balay 
20130ac07820SSatish Balay   a->rstart       = oldmat->rstart;
20140ac07820SSatish Balay   a->rend         = oldmat->rend;
20150ac07820SSatish Balay   a->cstart       = oldmat->cstart;
20160ac07820SSatish Balay   a->cend         = oldmat->cend;
20170ac07820SSatish Balay   a->size         = oldmat->size;
20180ac07820SSatish Balay   a->rank         = oldmat->rank;
2019e0fa3b82SLois Curfman McInnes   mat->insertmode = NOT_SET_VALUES;
20200ac07820SSatish Balay   a->rowvalues    = 0;
20210ac07820SSatish Balay   a->getrowactive = PETSC_FALSE;
202230793edcSSatish Balay   a->barray       = 0;
20230ac07820SSatish Balay 
20240ac07820SSatish Balay   a->rowners = (int *) PetscMalloc(2*(a->size+2)*sizeof(int)); CHKPTRQ(a->rowners);
2025f09e8eb9SSatish Balay   PLogObjectMemory(mat,2*(a->size+2)*sizeof(int)+sizeof(struct _p_Mat)+sizeof(Mat_MPIBAIJ));
20260ac07820SSatish Balay   a->cowners = a->rowners + a->size + 2;
20270ac07820SSatish Balay   PetscMemcpy(a->rowners,oldmat->rowners,2*(a->size+2)*sizeof(int));
20280ac07820SSatish Balay   ierr = StashInitialize_Private(&a->stash); CHKERRQ(ierr);
20290ac07820SSatish Balay   if (oldmat->colmap) {
20300ac07820SSatish Balay     a->colmap = (int *) PetscMalloc((a->Nbs)*sizeof(int));CHKPTRQ(a->colmap);
20310ac07820SSatish Balay     PLogObjectMemory(mat,(a->Nbs)*sizeof(int));
20320ac07820SSatish Balay     PetscMemcpy(a->colmap,oldmat->colmap,(a->Nbs)*sizeof(int));
20330ac07820SSatish Balay   } else a->colmap = 0;
20340ac07820SSatish Balay   if (oldmat->garray && (len = ((Mat_SeqBAIJ *) (oldmat->B->data))->nbs)) {
20350ac07820SSatish Balay     a->garray = (int *) PetscMalloc(len*sizeof(int)); CHKPTRQ(a->garray);
20360ac07820SSatish Balay     PLogObjectMemory(mat,len*sizeof(int));
20370ac07820SSatish Balay     PetscMemcpy(a->garray,oldmat->garray,len*sizeof(int));
20380ac07820SSatish Balay   } else a->garray = 0;
20390ac07820SSatish Balay 
20400ac07820SSatish Balay   ierr =  VecDuplicate(oldmat->lvec,&a->lvec); CHKERRQ(ierr);
20410ac07820SSatish Balay   PLogObjectParent(mat,a->lvec);
20420ac07820SSatish Balay   ierr =  VecScatterCopy(oldmat->Mvctx,&a->Mvctx); CHKERRQ(ierr);
20430ac07820SSatish Balay   PLogObjectParent(mat,a->Mvctx);
20440ac07820SSatish Balay   ierr =  MatConvert(oldmat->A,MATSAME,&a->A); CHKERRQ(ierr);
20450ac07820SSatish Balay   PLogObjectParent(mat,a->A);
20460ac07820SSatish Balay   ierr =  MatConvert(oldmat->B,MATSAME,&a->B); CHKERRQ(ierr);
20470ac07820SSatish Balay   PLogObjectParent(mat,a->B);
20480ac07820SSatish Balay   ierr = OptionsHasName(PETSC_NULL,"-help",&flg); CHKERRQ(ierr);
20490ac07820SSatish Balay   if (flg) {
20500ac07820SSatish Balay     ierr = MatPrintHelp(mat); CHKERRQ(ierr);
20510ac07820SSatish Balay   }
20520ac07820SSatish Balay   *newmat = mat;
20533a40ed3dSBarry Smith   PetscFunctionReturn(0);
20540ac07820SSatish Balay }
205557b952d6SSatish Balay 
205657b952d6SSatish Balay #include "sys.h"
205757b952d6SSatish Balay 
20585615d1e5SSatish Balay #undef __FUNC__
20595615d1e5SSatish Balay #define __FUNC__ "MatLoad_MPIBAIJ"
206057b952d6SSatish Balay int MatLoad_MPIBAIJ(Viewer viewer,MatType type,Mat *newmat)
206157b952d6SSatish Balay {
206257b952d6SSatish Balay   Mat          A;
206357b952d6SSatish Balay   int          i, nz, ierr, j,rstart, rend, fd;
206457b952d6SSatish Balay   Scalar       *vals,*buf;
206557b952d6SSatish Balay   MPI_Comm     comm = ((PetscObject)viewer)->comm;
206657b952d6SSatish Balay   MPI_Status   status;
2067cee3aa6bSSatish Balay   int          header[4],rank,size,*rowlengths = 0,M,N,m,*rowners,*browners,maxnz,*cols;
206857b952d6SSatish Balay   int          *locrowlens,*sndcounts = 0,*procsnz = 0, jj,*mycols,*ibuf;
206957b952d6SSatish Balay   int          flg,tag = ((PetscObject)viewer)->tag,bs=1,bs2,Mbs,mbs,extra_rows;
207057b952d6SSatish Balay   int          *dlens,*odlens,*mask,*masked1,*masked2,rowcount,odcount;
207157b952d6SSatish Balay   int          dcount,kmax,k,nzcount,tmp;
207257b952d6SSatish Balay 
2073d64ed03dSBarry Smith   PetscFunctionBegin;
207457b952d6SSatish Balay   ierr = OptionsGetInt(PETSC_NULL,"-matload_block_size",&bs,&flg);CHKERRQ(ierr);
207557b952d6SSatish Balay   bs2  = bs*bs;
207657b952d6SSatish Balay 
207757b952d6SSatish Balay   MPI_Comm_size(comm,&size); MPI_Comm_rank(comm,&rank);
207857b952d6SSatish Balay   if (!rank) {
207957b952d6SSatish Balay     ierr = ViewerBinaryGetDescriptor(viewer,&fd); CHKERRQ(ierr);
2080e5638eb3SBarry Smith     ierr = PetscBinaryRead(fd,(char *)header,4,PETSC_INT); CHKERRQ(ierr);
2081a8c6a408SBarry Smith     if (header[0] != MAT_COOKIE) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,0,"not matrix object");
2082d64ed03dSBarry Smith     if (header[3] < 0) {
2083a8c6a408SBarry Smith       SETERRQ(PETSC_ERR_FILE_UNEXPECTED,1,"Matrix stored in special format, cannot load as MPIBAIJ");
2084d64ed03dSBarry Smith     }
20856c5fab8fSBarry Smith   }
2086d64ed03dSBarry Smith 
2087ca161407SBarry Smith   ierr = MPI_Bcast(header+1,3,MPI_INT,0,comm);CHKERRQ(ierr);
208857b952d6SSatish Balay   M = header[1]; N = header[2];
208957b952d6SSatish Balay 
2090a8c6a408SBarry Smith   if (M != N) SETERRQ(PETSC_ERR_SUP,0,"Can only do square matrices");
209157b952d6SSatish Balay 
209257b952d6SSatish Balay   /*
209357b952d6SSatish Balay      This code adds extra rows to make sure the number of rows is
209457b952d6SSatish Balay      divisible by the blocksize
209557b952d6SSatish Balay   */
209657b952d6SSatish Balay   Mbs        = M/bs;
209757b952d6SSatish Balay   extra_rows = bs - M + bs*(Mbs);
209857b952d6SSatish Balay   if (extra_rows == bs) extra_rows = 0;
209957b952d6SSatish Balay   else                  Mbs++;
210057b952d6SSatish Balay   if (extra_rows &&!rank) {
2101b0267e0aSLois Curfman McInnes     PLogInfo(0,"MatLoad_MPIBAIJ:Padding loaded matrix to match blocksize\n");
210257b952d6SSatish Balay   }
2103537820f0SBarry Smith 
210457b952d6SSatish Balay   /* determine ownership of all rows */
210557b952d6SSatish Balay   mbs = Mbs/size + ((Mbs % size) > rank);
210657b952d6SSatish Balay   m   = mbs * bs;
2107cee3aa6bSSatish Balay   rowners = (int *) PetscMalloc(2*(size+2)*sizeof(int)); CHKPTRQ(rowners);
2108cee3aa6bSSatish Balay   browners = rowners + size + 1;
2109ca161407SBarry Smith   ierr = MPI_Allgather(&mbs,1,MPI_INT,rowners+1,1,MPI_INT,comm);CHKERRQ(ierr);
211057b952d6SSatish Balay   rowners[0] = 0;
2111cee3aa6bSSatish Balay   for ( i=2; i<=size; i++ ) rowners[i] += rowners[i-1];
2112cee3aa6bSSatish Balay   for ( i=0; i<=size;  i++ ) browners[i] = rowners[i]*bs;
211357b952d6SSatish Balay   rstart = rowners[rank];
211457b952d6SSatish Balay   rend   = rowners[rank+1];
211557b952d6SSatish Balay 
211657b952d6SSatish Balay   /* distribute row lengths to all processors */
211757b952d6SSatish Balay   locrowlens = (int*) PetscMalloc( (rend-rstart)*bs*sizeof(int) ); CHKPTRQ(locrowlens);
211857b952d6SSatish Balay   if (!rank) {
211957b952d6SSatish Balay     rowlengths = (int*) PetscMalloc( (M+extra_rows)*sizeof(int) ); CHKPTRQ(rowlengths);
2120e5638eb3SBarry Smith     ierr = PetscBinaryRead(fd,rowlengths,M,PETSC_INT); CHKERRQ(ierr);
212157b952d6SSatish Balay     for ( i=0; i<extra_rows; i++ ) rowlengths[M+i] = 1;
212257b952d6SSatish Balay     sndcounts = (int*) PetscMalloc( size*sizeof(int) ); CHKPTRQ(sndcounts);
2123cee3aa6bSSatish Balay     for ( i=0; i<size; i++ ) sndcounts[i] = browners[i+1] - browners[i];
2124ca161407SBarry Smith     ierr = MPI_Scatterv(rowlengths,sndcounts,browners,MPI_INT,locrowlens,(rend-rstart)*bs,MPI_INT,0,comm);CHKERRQ(ierr);
212557b952d6SSatish Balay     PetscFree(sndcounts);
2126d64ed03dSBarry Smith   } else {
2127ca161407SBarry Smith     ierr = MPI_Scatterv(0,0,0,MPI_INT,locrowlens,(rend-rstart)*bs,MPI_INT, 0,comm);CHKERRQ(ierr);
212857b952d6SSatish Balay   }
212957b952d6SSatish Balay 
213057b952d6SSatish Balay   if (!rank) {
213157b952d6SSatish Balay     /* calculate the number of nonzeros on each processor */
213257b952d6SSatish Balay     procsnz = (int*) PetscMalloc( size*sizeof(int) ); CHKPTRQ(procsnz);
213357b952d6SSatish Balay     PetscMemzero(procsnz,size*sizeof(int));
213457b952d6SSatish Balay     for ( i=0; i<size; i++ ) {
213557b952d6SSatish Balay       for ( j=rowners[i]*bs; j< rowners[i+1]*bs; j++ ) {
213657b952d6SSatish Balay         procsnz[i] += rowlengths[j];
213757b952d6SSatish Balay       }
213857b952d6SSatish Balay     }
213957b952d6SSatish Balay     PetscFree(rowlengths);
214057b952d6SSatish Balay 
214157b952d6SSatish Balay     /* determine max buffer needed and allocate it */
214257b952d6SSatish Balay     maxnz = 0;
214357b952d6SSatish Balay     for ( i=0; i<size; i++ ) {
214457b952d6SSatish Balay       maxnz = PetscMax(maxnz,procsnz[i]);
214557b952d6SSatish Balay     }
214657b952d6SSatish Balay     cols = (int *) PetscMalloc( maxnz*sizeof(int) ); CHKPTRQ(cols);
214757b952d6SSatish Balay 
214857b952d6SSatish Balay     /* read in my part of the matrix column indices  */
214957b952d6SSatish Balay     nz = procsnz[0];
215057b952d6SSatish Balay     ibuf = (int *) PetscMalloc( nz*sizeof(int) ); CHKPTRQ(ibuf);
215157b952d6SSatish Balay     mycols = ibuf;
2152cee3aa6bSSatish Balay     if (size == 1)  nz -= extra_rows;
2153e5638eb3SBarry Smith     ierr = PetscBinaryRead(fd,mycols,nz,PETSC_INT); CHKERRQ(ierr);
2154cee3aa6bSSatish Balay     if (size == 1)  for (i=0; i< extra_rows; i++) { mycols[nz+i] = M+i; }
2155cee3aa6bSSatish Balay 
215657b952d6SSatish Balay     /* read in every ones (except the last) and ship off */
215757b952d6SSatish Balay     for ( i=1; i<size-1; i++ ) {
215857b952d6SSatish Balay       nz   = procsnz[i];
2159e5638eb3SBarry Smith       ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT); CHKERRQ(ierr);
2160ca161407SBarry Smith       ierr = MPI_Send(cols,nz,MPI_INT,i,tag,comm);CHKERRQ(ierr);
216157b952d6SSatish Balay     }
216257b952d6SSatish Balay     /* read in the stuff for the last proc */
216357b952d6SSatish Balay     if ( size != 1 ) {
216457b952d6SSatish Balay       nz   = procsnz[size-1] - extra_rows;  /* the extra rows are not on the disk */
2165e5638eb3SBarry Smith       ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT); CHKERRQ(ierr);
216657b952d6SSatish Balay       for ( i=0; i<extra_rows; i++ ) cols[nz+i] = M+i;
2167ca161407SBarry Smith       ierr = MPI_Send(cols,nz+extra_rows,MPI_INT,size-1,tag,comm);CHKERRQ(ierr);
216857b952d6SSatish Balay     }
216957b952d6SSatish Balay     PetscFree(cols);
2170d64ed03dSBarry Smith   } else {
217157b952d6SSatish Balay     /* determine buffer space needed for message */
217257b952d6SSatish Balay     nz = 0;
217357b952d6SSatish Balay     for ( i=0; i<m; i++ ) {
217457b952d6SSatish Balay       nz += locrowlens[i];
217557b952d6SSatish Balay     }
217657b952d6SSatish Balay     ibuf   = (int*) PetscMalloc( nz*sizeof(int) ); CHKPTRQ(ibuf);
217757b952d6SSatish Balay     mycols = ibuf;
217857b952d6SSatish Balay     /* receive message of column indices*/
2179ca161407SBarry Smith     ierr = MPI_Recv(mycols,nz,MPI_INT,0,tag,comm,&status);CHKERRQ(ierr);
2180ca161407SBarry Smith     ierr = MPI_Get_count(&status,MPI_INT,&maxnz);CHKERRQ(ierr);
2181a8c6a408SBarry Smith     if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,0,"something is wrong with file");
218257b952d6SSatish Balay   }
218357b952d6SSatish Balay 
218457b952d6SSatish Balay   /* loop over local rows, determining number of off diagonal entries */
2185cee3aa6bSSatish Balay   dlens  = (int *) PetscMalloc( 2*(rend-rstart+1)*sizeof(int) ); CHKPTRQ(dlens);
2186cee3aa6bSSatish Balay   odlens = dlens + (rend-rstart);
218757b952d6SSatish Balay   mask   = (int *) PetscMalloc( 3*Mbs*sizeof(int) ); CHKPTRQ(mask);
2188cee3aa6bSSatish Balay   PetscMemzero(mask,3*Mbs*sizeof(int));
218957b952d6SSatish Balay   masked1 = mask    + Mbs;
219057b952d6SSatish Balay   masked2 = masked1 + Mbs;
219157b952d6SSatish Balay   rowcount = 0; nzcount = 0;
219257b952d6SSatish Balay   for ( i=0; i<mbs; i++ ) {
219357b952d6SSatish Balay     dcount  = 0;
219457b952d6SSatish Balay     odcount = 0;
219557b952d6SSatish Balay     for ( j=0; j<bs; j++ ) {
219657b952d6SSatish Balay       kmax = locrowlens[rowcount];
219757b952d6SSatish Balay       for ( k=0; k<kmax; k++ ) {
219857b952d6SSatish Balay         tmp = mycols[nzcount++]/bs;
219957b952d6SSatish Balay         if (!mask[tmp]) {
220057b952d6SSatish Balay           mask[tmp] = 1;
220157b952d6SSatish Balay           if (tmp < rstart || tmp >= rend ) masked2[odcount++] = tmp;
220257b952d6SSatish Balay           else masked1[dcount++] = tmp;
220357b952d6SSatish Balay         }
220457b952d6SSatish Balay       }
220557b952d6SSatish Balay       rowcount++;
220657b952d6SSatish Balay     }
2207cee3aa6bSSatish Balay 
220857b952d6SSatish Balay     dlens[i]  = dcount;
220957b952d6SSatish Balay     odlens[i] = odcount;
2210cee3aa6bSSatish Balay 
221157b952d6SSatish Balay     /* zero out the mask elements we set */
221257b952d6SSatish Balay     for ( j=0; j<dcount; j++ ) mask[masked1[j]] = 0;
221357b952d6SSatish Balay     for ( j=0; j<odcount; j++ ) mask[masked2[j]] = 0;
221457b952d6SSatish Balay   }
2215cee3aa6bSSatish Balay 
221657b952d6SSatish Balay   /* create our matrix */
2217537820f0SBarry Smith   ierr = MatCreateMPIBAIJ(comm,bs,m,PETSC_DECIDE,M+extra_rows,N+extra_rows,0,dlens,0,odlens,newmat);
2218537820f0SBarry Smith          CHKERRQ(ierr);
221957b952d6SSatish Balay   A = *newmat;
22206d4a8577SBarry Smith   MatSetOption(A,MAT_COLUMNS_SORTED);
222157b952d6SSatish Balay 
222257b952d6SSatish Balay   if (!rank) {
222357b952d6SSatish Balay     buf = (Scalar *) PetscMalloc( maxnz*sizeof(Scalar) ); CHKPTRQ(buf);
222457b952d6SSatish Balay     /* read in my part of the matrix numerical values  */
222557b952d6SSatish Balay     nz = procsnz[0];
222657b952d6SSatish Balay     vals = buf;
2227cee3aa6bSSatish Balay     mycols = ibuf;
2228cee3aa6bSSatish Balay     if (size == 1)  nz -= extra_rows;
2229e5638eb3SBarry Smith     ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR); CHKERRQ(ierr);
2230cee3aa6bSSatish Balay     if (size == 1)  for (i=0; i< extra_rows; i++) { vals[nz+i] = 1.0; }
2231537820f0SBarry Smith 
223257b952d6SSatish Balay     /* insert into matrix */
223357b952d6SSatish Balay     jj      = rstart*bs;
223457b952d6SSatish Balay     for ( i=0; i<m; i++ ) {
223557b952d6SSatish Balay       ierr = MatSetValues(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr);
223657b952d6SSatish Balay       mycols += locrowlens[i];
223757b952d6SSatish Balay       vals   += locrowlens[i];
223857b952d6SSatish Balay       jj++;
223957b952d6SSatish Balay     }
224057b952d6SSatish Balay     /* read in other processors (except the last one) and ship out */
224157b952d6SSatish Balay     for ( i=1; i<size-1; i++ ) {
224257b952d6SSatish Balay       nz   = procsnz[i];
224357b952d6SSatish Balay       vals = buf;
2244e5638eb3SBarry Smith       ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR); CHKERRQ(ierr);
2245ca161407SBarry Smith       ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,A->tag,comm);CHKERRQ(ierr);
224657b952d6SSatish Balay     }
224757b952d6SSatish Balay     /* the last proc */
224857b952d6SSatish Balay     if ( size != 1 ){
224957b952d6SSatish Balay       nz   = procsnz[i] - extra_rows;
2250cee3aa6bSSatish Balay       vals = buf;
2251e5638eb3SBarry Smith       ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR); CHKERRQ(ierr);
225257b952d6SSatish Balay       for ( i=0; i<extra_rows; i++ ) vals[nz+i] = 1.0;
2253ca161407SBarry Smith       ierr = MPI_Send(vals,nz+extra_rows,MPIU_SCALAR,size-1,A->tag,comm);CHKERRQ(ierr);
225457b952d6SSatish Balay     }
225557b952d6SSatish Balay     PetscFree(procsnz);
2256d64ed03dSBarry Smith   } else {
225757b952d6SSatish Balay     /* receive numeric values */
225857b952d6SSatish Balay     buf = (Scalar*) PetscMalloc( nz*sizeof(Scalar) ); CHKPTRQ(buf);
225957b952d6SSatish Balay 
226057b952d6SSatish Balay     /* receive message of values*/
226157b952d6SSatish Balay     vals   = buf;
2262cee3aa6bSSatish Balay     mycols = ibuf;
2263ca161407SBarry Smith     ierr   = MPI_Recv(vals,nz,MPIU_SCALAR,0,A->tag,comm,&status);CHKERRQ(ierr);
2264ca161407SBarry Smith     ierr   = MPI_Get_count(&status,MPIU_SCALAR,&maxnz);CHKERRQ(ierr);
2265a8c6a408SBarry Smith     if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,0,"something is wrong with file");
226657b952d6SSatish Balay 
226757b952d6SSatish Balay     /* insert into matrix */
226857b952d6SSatish Balay     jj      = rstart*bs;
2269cee3aa6bSSatish Balay     for ( i=0; i<m; i++ ) {
227057b952d6SSatish Balay       ierr    = MatSetValues(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr);
227157b952d6SSatish Balay       mycols += locrowlens[i];
227257b952d6SSatish Balay       vals   += locrowlens[i];
227357b952d6SSatish Balay       jj++;
227457b952d6SSatish Balay     }
227557b952d6SSatish Balay   }
227657b952d6SSatish Balay   PetscFree(locrowlens);
227757b952d6SSatish Balay   PetscFree(buf);
227857b952d6SSatish Balay   PetscFree(ibuf);
227957b952d6SSatish Balay   PetscFree(rowners);
228057b952d6SSatish Balay   PetscFree(dlens);
2281cee3aa6bSSatish Balay   PetscFree(mask);
22826d4a8577SBarry Smith   ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY); CHKERRQ(ierr);
22836d4a8577SBarry Smith   ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY); CHKERRQ(ierr);
22843a40ed3dSBarry Smith   PetscFunctionReturn(0);
228557b952d6SSatish Balay }
228657b952d6SSatish Balay 
228757b952d6SSatish Balay 
2288