1a5eb4965SSatish Balay #ifdef PETSC_RCS_HEADER 2*4a15367fSSatish Balay static char vcid[] = "$Id: mpibaij.c,v 1.102 1998/02/01 07:42:11 balay Exp balay $"; 379bdfe76SSatish Balay #endif 479bdfe76SSatish Balay 53369ce9aSBarry Smith #include "pinclude/pviewer.h" 670f55243SBarry Smith #include "src/mat/impls/baij/mpi/mpibaij.h" 7c16cb8f2SBarry Smith #include "src/vec/vecimpl.h" 879bdfe76SSatish Balay 957b952d6SSatish Balay 1057b952d6SSatish Balay extern int MatSetUpMultiply_MPIBAIJ(Mat); 1157b952d6SSatish Balay extern int DisAssemble_MPIBAIJ(Mat); 12d212a18eSSatish Balay extern int MatIncreaseOverlap_MPIBAIJ(Mat,int,IS *,int); 13d212a18eSSatish Balay extern int MatGetSubMatrices_MPIBAIJ(Mat,int,IS *,IS *,MatGetSubMatrixCall,Mat **); 143b2fbd54SBarry Smith 15537820f0SBarry Smith /* 16537820f0SBarry Smith Local utility routine that creates a mapping from the global column 1757b952d6SSatish Balay number to the local number in the off-diagonal part of the local 1857b952d6SSatish Balay storage of the matrix. This is done in a non scable way since the 1957b952d6SSatish Balay length of colmap equals the global matrix length. 2057b952d6SSatish Balay */ 215615d1e5SSatish Balay #undef __FUNC__ 225615d1e5SSatish Balay #define __FUNC__ "CreateColmap_MPIBAIJ_Private" 2357b952d6SSatish Balay static int CreateColmap_MPIBAIJ_Private(Mat mat) 2457b952d6SSatish Balay { 2557b952d6SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *) mat->data; 2657b952d6SSatish Balay Mat_SeqBAIJ *B = (Mat_SeqBAIJ*) baij->B->data; 27928fc39bSSatish Balay int nbs = B->nbs,i,bs=B->bs;; 2857b952d6SSatish Balay 29d64ed03dSBarry Smith PetscFunctionBegin; 30758f045eSSatish Balay baij->colmap = (int *) PetscMalloc((baij->Nbs+1)*sizeof(int));CHKPTRQ(baij->colmap); 3157b952d6SSatish Balay PLogObjectMemory(mat,baij->Nbs*sizeof(int)); 3257b952d6SSatish Balay PetscMemzero(baij->colmap,baij->Nbs*sizeof(int)); 33928fc39bSSatish Balay for ( i=0; i<nbs; i++ ) baij->colmap[baij->garray[i]] = i*bs+1; 343a40ed3dSBarry Smith PetscFunctionReturn(0); 3557b952d6SSatish Balay } 3657b952d6SSatish Balay 3780c1aa95SSatish Balay #define CHUNKSIZE 10 3880c1aa95SSatish Balay 39f5e9677aSSatish Balay #define MatSetValues_SeqBAIJ_A_Private(row,col,value,addv) \ 4080c1aa95SSatish Balay { \ 4180c1aa95SSatish Balay \ 4280c1aa95SSatish Balay brow = row/bs; \ 4380c1aa95SSatish Balay rp = aj + ai[brow]; ap = aa + bs2*ai[brow]; \ 44ac7a638eSSatish Balay rmax = aimax[brow]; nrow = ailen[brow]; \ 4580c1aa95SSatish Balay bcol = col/bs; \ 4680c1aa95SSatish Balay ridx = row % bs; cidx = col % bs; \ 47ab26458aSBarry Smith low = 0; high = nrow; \ 48ab26458aSBarry Smith while (high-low > 3) { \ 49ab26458aSBarry Smith t = (low+high)/2; \ 50ab26458aSBarry Smith if (rp[t] > bcol) high = t; \ 51ab26458aSBarry Smith else low = t; \ 52ab26458aSBarry Smith } \ 53ab26458aSBarry Smith for ( _i=low; _i<high; _i++ ) { \ 5480c1aa95SSatish Balay if (rp[_i] > bcol) break; \ 5580c1aa95SSatish Balay if (rp[_i] == bcol) { \ 5680c1aa95SSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 57eada6651SSatish Balay if (addv == ADD_VALUES) *bap += value; \ 58eada6651SSatish Balay else *bap = value; \ 59ac7a638eSSatish Balay goto a_noinsert; \ 6080c1aa95SSatish Balay } \ 6180c1aa95SSatish Balay } \ 6289280ab3SLois Curfman McInnes if (a->nonew == 1) goto a_noinsert; \ 63a8c6a408SBarry Smith else if (a->nonew == -1) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Inserting a new nonzero into matrix"); \ 6480c1aa95SSatish Balay if (nrow >= rmax) { \ 6580c1aa95SSatish Balay /* there is no extra room in row, therefore enlarge */ \ 6680c1aa95SSatish Balay int new_nz = ai[a->mbs] + CHUNKSIZE,len,*new_i,*new_j; \ 6780c1aa95SSatish Balay Scalar *new_a; \ 6880c1aa95SSatish Balay \ 69a8c6a408SBarry Smith if (a->nonew == -2) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Inserting a new nonzero in the matrix"); \ 7089280ab3SLois Curfman McInnes \ 7180c1aa95SSatish Balay /* malloc new storage space */ \ 7280c1aa95SSatish Balay len = new_nz*(sizeof(int)+bs2*sizeof(Scalar))+(a->mbs+1)*sizeof(int); \ 7380c1aa95SSatish Balay new_a = (Scalar *) PetscMalloc( len ); CHKPTRQ(new_a); \ 7480c1aa95SSatish Balay new_j = (int *) (new_a + bs2*new_nz); \ 7580c1aa95SSatish Balay new_i = new_j + new_nz; \ 7680c1aa95SSatish Balay \ 7780c1aa95SSatish Balay /* copy over old data into new slots */ \ 7880c1aa95SSatish Balay for ( ii=0; ii<brow+1; ii++ ) {new_i[ii] = ai[ii];} \ 7980c1aa95SSatish Balay for ( ii=brow+1; ii<a->mbs+1; ii++ ) {new_i[ii] = ai[ii]+CHUNKSIZE;} \ 8080c1aa95SSatish Balay PetscMemcpy(new_j,aj,(ai[brow]+nrow)*sizeof(int)); \ 8180c1aa95SSatish Balay len = (new_nz - CHUNKSIZE - ai[brow] - nrow); \ 8280c1aa95SSatish Balay PetscMemcpy(new_j+ai[brow]+nrow+CHUNKSIZE,aj+ai[brow]+nrow, \ 8380c1aa95SSatish Balay len*sizeof(int)); \ 8480c1aa95SSatish Balay PetscMemcpy(new_a,aa,(ai[brow]+nrow)*bs2*sizeof(Scalar)); \ 8580c1aa95SSatish Balay PetscMemzero(new_a+bs2*(ai[brow]+nrow),bs2*CHUNKSIZE*sizeof(Scalar)); \ 8680c1aa95SSatish Balay PetscMemcpy(new_a+bs2*(ai[brow]+nrow+CHUNKSIZE), \ 8780c1aa95SSatish Balay aa+bs2*(ai[brow]+nrow),bs2*len*sizeof(Scalar)); \ 8880c1aa95SSatish Balay /* free up old matrix storage */ \ 8980c1aa95SSatish Balay PetscFree(a->a); \ 9080c1aa95SSatish Balay if (!a->singlemalloc) {PetscFree(a->i);PetscFree(a->j);} \ 9180c1aa95SSatish Balay aa = a->a = new_a; ai = a->i = new_i; aj = a->j = new_j; \ 9280c1aa95SSatish Balay a->singlemalloc = 1; \ 9380c1aa95SSatish Balay \ 9480c1aa95SSatish Balay rp = aj + ai[brow]; ap = aa + bs2*ai[brow]; \ 95ac7a638eSSatish Balay rmax = aimax[brow] = aimax[brow] + CHUNKSIZE; \ 9680c1aa95SSatish Balay PLogObjectMemory(A,CHUNKSIZE*(sizeof(int) + bs2*sizeof(Scalar))); \ 9780c1aa95SSatish Balay a->maxnz += bs2*CHUNKSIZE; \ 9880c1aa95SSatish Balay a->reallocs++; \ 9980c1aa95SSatish Balay a->nz++; \ 10080c1aa95SSatish Balay } \ 10180c1aa95SSatish Balay N = nrow++ - 1; \ 10280c1aa95SSatish Balay /* shift up all the later entries in this row */ \ 10380c1aa95SSatish Balay for ( ii=N; ii>=_i; ii-- ) { \ 10480c1aa95SSatish Balay rp[ii+1] = rp[ii]; \ 10580c1aa95SSatish Balay PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(Scalar)); \ 10680c1aa95SSatish Balay } \ 10780c1aa95SSatish Balay if (N>=_i) PetscMemzero(ap+bs2*_i,bs2*sizeof(Scalar)); \ 10880c1aa95SSatish Balay rp[_i] = bcol; \ 10980c1aa95SSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 110ac7a638eSSatish Balay a_noinsert:; \ 11180c1aa95SSatish Balay ailen[brow] = nrow; \ 11280c1aa95SSatish Balay } 11357b952d6SSatish Balay 114ac7a638eSSatish Balay #define MatSetValues_SeqBAIJ_B_Private(row,col,value,addv) \ 115ac7a638eSSatish Balay { \ 116ac7a638eSSatish Balay \ 117ac7a638eSSatish Balay brow = row/bs; \ 118ac7a638eSSatish Balay rp = bj + bi[brow]; ap = ba + bs2*bi[brow]; \ 119ac7a638eSSatish Balay rmax = bimax[brow]; nrow = bilen[brow]; \ 120ac7a638eSSatish Balay bcol = col/bs; \ 121ac7a638eSSatish Balay ridx = row % bs; cidx = col % bs; \ 122ac7a638eSSatish Balay low = 0; high = nrow; \ 123ac7a638eSSatish Balay while (high-low > 3) { \ 124ac7a638eSSatish Balay t = (low+high)/2; \ 125ac7a638eSSatish Balay if (rp[t] > bcol) high = t; \ 126ac7a638eSSatish Balay else low = t; \ 127ac7a638eSSatish Balay } \ 128ac7a638eSSatish Balay for ( _i=low; _i<high; _i++ ) { \ 129ac7a638eSSatish Balay if (rp[_i] > bcol) break; \ 130ac7a638eSSatish Balay if (rp[_i] == bcol) { \ 131ac7a638eSSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 132ac7a638eSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 133ac7a638eSSatish Balay else *bap = value; \ 134ac7a638eSSatish Balay goto b_noinsert; \ 135ac7a638eSSatish Balay } \ 136ac7a638eSSatish Balay } \ 13789280ab3SLois Curfman McInnes if (b->nonew == 1) goto b_noinsert; \ 138a8c6a408SBarry Smith else if (b->nonew == -1) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Inserting a new nonzero into matrix"); \ 139ac7a638eSSatish Balay if (nrow >= rmax) { \ 140ac7a638eSSatish Balay /* there is no extra room in row, therefore enlarge */ \ 14174c639caSSatish Balay int new_nz = bi[b->mbs] + CHUNKSIZE,len,*new_i,*new_j; \ 142ac7a638eSSatish Balay Scalar *new_a; \ 143ac7a638eSSatish Balay \ 144a8c6a408SBarry Smith if (b->nonew == -2) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Inserting a new nonzero in the matrix"); \ 14589280ab3SLois Curfman McInnes \ 146ac7a638eSSatish Balay /* malloc new storage space */ \ 14774c639caSSatish Balay len = new_nz*(sizeof(int)+bs2*sizeof(Scalar))+(b->mbs+1)*sizeof(int); \ 148ac7a638eSSatish Balay new_a = (Scalar *) PetscMalloc( len ); CHKPTRQ(new_a); \ 149ac7a638eSSatish Balay new_j = (int *) (new_a + bs2*new_nz); \ 150ac7a638eSSatish Balay new_i = new_j + new_nz; \ 151ac7a638eSSatish Balay \ 152ac7a638eSSatish Balay /* copy over old data into new slots */ \ 153ac7a638eSSatish Balay for ( ii=0; ii<brow+1; ii++ ) {new_i[ii] = bi[ii];} \ 15474c639caSSatish Balay for ( ii=brow+1; ii<b->mbs+1; ii++ ) {new_i[ii] = bi[ii]+CHUNKSIZE;} \ 155ac7a638eSSatish Balay PetscMemcpy(new_j,bj,(bi[brow]+nrow)*sizeof(int)); \ 156ac7a638eSSatish Balay len = (new_nz - CHUNKSIZE - bi[brow] - nrow); \ 157ac7a638eSSatish Balay PetscMemcpy(new_j+bi[brow]+nrow+CHUNKSIZE,bj+bi[brow]+nrow, \ 158ac7a638eSSatish Balay len*sizeof(int)); \ 159ac7a638eSSatish Balay PetscMemcpy(new_a,ba,(bi[brow]+nrow)*bs2*sizeof(Scalar)); \ 160ac7a638eSSatish Balay PetscMemzero(new_a+bs2*(bi[brow]+nrow),bs2*CHUNKSIZE*sizeof(Scalar)); \ 161ac7a638eSSatish Balay PetscMemcpy(new_a+bs2*(bi[brow]+nrow+CHUNKSIZE), \ 162ac7a638eSSatish Balay ba+bs2*(bi[brow]+nrow),bs2*len*sizeof(Scalar)); \ 163ac7a638eSSatish Balay /* free up old matrix storage */ \ 16474c639caSSatish Balay PetscFree(b->a); \ 16574c639caSSatish Balay if (!b->singlemalloc) {PetscFree(b->i);PetscFree(b->j);} \ 16674c639caSSatish Balay ba = b->a = new_a; bi = b->i = new_i; bj = b->j = new_j; \ 16774c639caSSatish Balay b->singlemalloc = 1; \ 168ac7a638eSSatish Balay \ 169ac7a638eSSatish Balay rp = bj + bi[brow]; ap = ba + bs2*bi[brow]; \ 170ac7a638eSSatish Balay rmax = bimax[brow] = bimax[brow] + CHUNKSIZE; \ 17174c639caSSatish Balay PLogObjectMemory(B,CHUNKSIZE*(sizeof(int) + bs2*sizeof(Scalar))); \ 17274c639caSSatish Balay b->maxnz += bs2*CHUNKSIZE; \ 17374c639caSSatish Balay b->reallocs++; \ 17474c639caSSatish Balay b->nz++; \ 175ac7a638eSSatish Balay } \ 176ac7a638eSSatish Balay N = nrow++ - 1; \ 177ac7a638eSSatish Balay /* shift up all the later entries in this row */ \ 178ac7a638eSSatish Balay for ( ii=N; ii>=_i; ii-- ) { \ 179ac7a638eSSatish Balay rp[ii+1] = rp[ii]; \ 180ac7a638eSSatish Balay PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(Scalar)); \ 181ac7a638eSSatish Balay } \ 182ac7a638eSSatish Balay if (N>=_i) PetscMemzero(ap+bs2*_i,bs2*sizeof(Scalar)); \ 183ac7a638eSSatish Balay rp[_i] = bcol; \ 184ac7a638eSSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 185ac7a638eSSatish Balay b_noinsert:; \ 186ac7a638eSSatish Balay bilen[brow] = nrow; \ 187ac7a638eSSatish Balay } 188ac7a638eSSatish Balay 1895615d1e5SSatish Balay #undef __FUNC__ 1905615d1e5SSatish Balay #define __FUNC__ "MatSetValues_MPIBAIJ" 191ec1ea8d8SLois Curfman McInnes int MatSetValues_MPIBAIJ(Mat mat,int m,int *im,int n,int *in,Scalar *v,InsertMode addv) 19257b952d6SSatish Balay { 19357b952d6SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *) mat->data; 19457b952d6SSatish Balay Scalar value; 1954fa0d573SSatish Balay int ierr,i,j,row,col; 1964fa0d573SSatish Balay int roworiented = baij->roworiented,rstart_orig=baij->rstart_bs ; 1974fa0d573SSatish Balay int rend_orig=baij->rend_bs,cstart_orig=baij->cstart_bs; 1984fa0d573SSatish Balay int cend_orig=baij->cend_bs,bs=baij->bs; 19957b952d6SSatish Balay 200eada6651SSatish Balay /* Some Variables required in the macro */ 20180c1aa95SSatish Balay Mat A = baij->A; 20280c1aa95SSatish Balay Mat_SeqBAIJ *a = (Mat_SeqBAIJ *) (A)->data; 203ac7a638eSSatish Balay int *aimax=a->imax,*ai=a->i,*ailen=a->ilen,*aj=a->j; 204ac7a638eSSatish Balay Scalar *aa=a->a; 205ac7a638eSSatish Balay 206ac7a638eSSatish Balay Mat B = baij->B; 207ac7a638eSSatish Balay Mat_SeqBAIJ *b = (Mat_SeqBAIJ *) (B)->data; 208ac7a638eSSatish Balay int *bimax=b->imax,*bi=b->i,*bilen=b->ilen,*bj=b->j; 209ac7a638eSSatish Balay Scalar *ba=b->a; 210ac7a638eSSatish Balay 211ac7a638eSSatish Balay int *rp,ii,nrow,_i,rmax,N,brow,bcol; 212ab26458aSBarry Smith int low,high,t,ridx,cidx,bs2=a->bs2; 213ac7a638eSSatish Balay Scalar *ap,*bap; 21480c1aa95SSatish Balay 215d64ed03dSBarry Smith PetscFunctionBegin; 21657b952d6SSatish Balay for ( i=0; i<m; i++ ) { 2173a40ed3dSBarry Smith #if defined(USE_PETSC_BOPT_g) 218a8c6a408SBarry Smith if (im[i] < 0) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Negative row"); 219a8c6a408SBarry Smith if (im[i] >= baij->M) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Row too large"); 220639f9d9dSBarry Smith #endif 22157b952d6SSatish Balay if (im[i] >= rstart_orig && im[i] < rend_orig) { 22257b952d6SSatish Balay row = im[i] - rstart_orig; 22357b952d6SSatish Balay for ( j=0; j<n; j++ ) { 22457b952d6SSatish Balay if (in[j] >= cstart_orig && in[j] < cend_orig){ 22557b952d6SSatish Balay col = in[j] - cstart_orig; 22657b952d6SSatish Balay if (roworiented) value = v[i*n+j]; else value = v[i+j*m]; 227f5e9677aSSatish Balay MatSetValues_SeqBAIJ_A_Private(row,col,value,addv); 22880c1aa95SSatish Balay /* ierr = MatSetValues_SeqBAIJ(baij->A,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 22957b952d6SSatish Balay } 2303a40ed3dSBarry Smith #if defined(USE_PETSC_BOPT_g) 231a8c6a408SBarry Smith else if (in[j] < 0) {SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Negative column");} 232a8c6a408SBarry Smith else if (in[j] >= baij->N) {SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Col too large");} 233639f9d9dSBarry Smith #endif 23457b952d6SSatish Balay else { 23557b952d6SSatish Balay if (mat->was_assembled) { 236905e6a2fSBarry Smith if (!baij->colmap) { 237905e6a2fSBarry Smith ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 238905e6a2fSBarry Smith } 239905e6a2fSBarry Smith col = baij->colmap[in[j]/bs] - 1 + in[j]%bs; 24057b952d6SSatish Balay if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) { 24157b952d6SSatish Balay ierr = DisAssemble_MPIBAIJ(mat); CHKERRQ(ierr); 24257b952d6SSatish Balay col = in[j]; 2439bf004c3SSatish Balay /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */ 2449bf004c3SSatish Balay B = baij->B; 2459bf004c3SSatish Balay b = (Mat_SeqBAIJ *) (B)->data; 2469bf004c3SSatish Balay bimax=b->imax;bi=b->i;bilen=b->ilen;bj=b->j; 2479bf004c3SSatish Balay ba=b->a; 24857b952d6SSatish Balay } 249d64ed03dSBarry Smith } else col = in[j]; 25057b952d6SSatish Balay if (roworiented) value = v[i*n+j]; else value = v[i+j*m]; 251ac7a638eSSatish Balay MatSetValues_SeqBAIJ_B_Private(row,col,value,addv); 252ac7a638eSSatish Balay /* ierr = MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 25357b952d6SSatish Balay } 25457b952d6SSatish Balay } 255d64ed03dSBarry Smith } else { 25690f02eecSBarry Smith if (roworiented && !baij->donotstash) { 25757b952d6SSatish Balay ierr = StashValues_Private(&baij->stash,im[i],n,in,v+i*n,addv);CHKERRQ(ierr); 258d64ed03dSBarry Smith } else { 25990f02eecSBarry Smith if (!baij->donotstash) { 26057b952d6SSatish Balay row = im[i]; 26157b952d6SSatish Balay for ( j=0; j<n; j++ ) { 26257b952d6SSatish Balay ierr = StashValues_Private(&baij->stash,row,1,in+j,v+i+j*m,addv);CHKERRQ(ierr); 26357b952d6SSatish Balay } 26457b952d6SSatish Balay } 26557b952d6SSatish Balay } 26657b952d6SSatish Balay } 26790f02eecSBarry Smith } 2683a40ed3dSBarry Smith PetscFunctionReturn(0); 26957b952d6SSatish Balay } 27057b952d6SSatish Balay 271ab26458aSBarry Smith extern int MatSetValuesBlocked_SeqBAIJ(Mat,int,int*,int,int*,Scalar*,InsertMode); 272ab26458aSBarry Smith #undef __FUNC__ 273ab26458aSBarry Smith #define __FUNC__ "MatSetValuesBlocked_MPIBAIJ" 274ec1ea8d8SLois Curfman McInnes int MatSetValuesBlocked_MPIBAIJ(Mat mat,int m,int *im,int n,int *in,Scalar *v,InsertMode addv) 275ab26458aSBarry Smith { 276ab26458aSBarry Smith Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *) mat->data; 27730793edcSSatish Balay Scalar *value,*barray=baij->barray; 278abef11f7SSatish Balay int ierr,i,j,ii,jj,row,col,k,l; 279ab26458aSBarry Smith int roworiented = baij->roworiented,rstart=baij->rstart ; 280ab26458aSBarry Smith int rend=baij->rend,cstart=baij->cstart,stepval; 281ab26458aSBarry Smith int cend=baij->cend,bs=baij->bs,bs2=baij->bs2; 282ab26458aSBarry Smith 28330793edcSSatish Balay if(!barray) { 28447513183SBarry Smith baij->barray = barray = (Scalar*) PetscMalloc(bs2*sizeof(Scalar)); CHKPTRQ(barray); 28530793edcSSatish Balay } 28630793edcSSatish Balay 287ab26458aSBarry Smith if (roworiented) { 288ab26458aSBarry Smith stepval = (n-1)*bs; 289ab26458aSBarry Smith } else { 290ab26458aSBarry Smith stepval = (m-1)*bs; 291ab26458aSBarry Smith } 292ab26458aSBarry Smith for ( i=0; i<m; i++ ) { 2933a40ed3dSBarry Smith #if defined(USE_PETSC_BOPT_g) 294a8c6a408SBarry Smith if (im[i] < 0) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Negative row"); 295a8c6a408SBarry Smith if (im[i] >= baij->Mbs) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Row too large"); 296ab26458aSBarry Smith #endif 297ab26458aSBarry Smith if (im[i] >= rstart && im[i] < rend) { 298ab26458aSBarry Smith row = im[i] - rstart; 299ab26458aSBarry Smith for ( j=0; j<n; j++ ) { 30015b57d14SSatish Balay /* If NumCol = 1 then a copy is not required */ 30115b57d14SSatish Balay if ((roworiented) && (n == 1)) { 30215b57d14SSatish Balay barray = v + i*bs2; 30315b57d14SSatish Balay } else if((!roworiented) && (m == 1)) { 30415b57d14SSatish Balay barray = v + j*bs2; 30515b57d14SSatish Balay } else { /* Here a copy is required */ 306ab26458aSBarry Smith if (roworiented) { 307ab26458aSBarry Smith value = v + i*(stepval+bs)*bs + j*bs; 308ab26458aSBarry Smith } else { 309ab26458aSBarry Smith value = v + j*(stepval+bs)*bs + i*bs; 310abef11f7SSatish Balay } 31147513183SBarry Smith for ( ii=0; ii<bs; ii++,value+=stepval ) { 31247513183SBarry Smith for (jj=0; jj<bs; jj++ ) { 31330793edcSSatish Balay *barray++ = *value++; 31447513183SBarry Smith } 31547513183SBarry Smith } 31630793edcSSatish Balay barray -=bs2; 31715b57d14SSatish Balay } 318abef11f7SSatish Balay 319abef11f7SSatish Balay if (in[j] >= cstart && in[j] < cend){ 320abef11f7SSatish Balay col = in[j] - cstart; 32130793edcSSatish Balay ierr = MatSetValuesBlocked_SeqBAIJ(baij->A,1,&row,1,&col,barray,addv);CHKERRQ(ierr); 322ab26458aSBarry Smith } 3233a40ed3dSBarry Smith #if defined(USE_PETSC_BOPT_g) 324a8c6a408SBarry Smith else if (in[j] < 0) {SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Negative column");} 325a8c6a408SBarry Smith else if (in[j] >= baij->Nbs) {SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Column too large");} 326ab26458aSBarry Smith #endif 327ab26458aSBarry Smith else { 328ab26458aSBarry Smith if (mat->was_assembled) { 329ab26458aSBarry Smith if (!baij->colmap) { 330ab26458aSBarry Smith ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 331ab26458aSBarry Smith } 332a5eb4965SSatish Balay 3333a40ed3dSBarry Smith #if defined(USE_PETSC_BOPT_g) 334a8c6a408SBarry Smith if ((baij->colmap[in[j]] - 1) % bs) {SETERRQ(PETSC_ERR_PLIB,0,"Incorrect colmap");} 335a5eb4965SSatish Balay #endif 336a5eb4965SSatish Balay col = (baij->colmap[in[j]] - 1)/bs; 337ab26458aSBarry Smith if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) { 338ab26458aSBarry Smith ierr = DisAssemble_MPIBAIJ(mat); CHKERRQ(ierr); 339ab26458aSBarry Smith col = in[j]; 340ab26458aSBarry Smith } 341ab26458aSBarry Smith } 342ab26458aSBarry Smith else col = in[j]; 34330793edcSSatish Balay ierr = MatSetValuesBlocked_SeqBAIJ(baij->B,1,&row,1,&col,barray,addv);CHKERRQ(ierr); 344ab26458aSBarry Smith } 345ab26458aSBarry Smith } 346d64ed03dSBarry Smith } else { 347ab26458aSBarry Smith if (!baij->donotstash) { 348ab26458aSBarry Smith if (roworiented ) { 349abef11f7SSatish Balay row = im[i]*bs; 350abef11f7SSatish Balay value = v + i*(stepval+bs)*bs; 351abef11f7SSatish Balay for ( j=0; j<bs; j++,row++ ) { 352abef11f7SSatish Balay for ( k=0; k<n; k++ ) { 353abef11f7SSatish Balay for ( col=in[k]*bs,l=0; l<bs; l++,col++) { 354abef11f7SSatish Balay ierr = StashValues_Private(&baij->stash,row,1,&col,value++,addv);CHKERRQ(ierr); 355abef11f7SSatish Balay } 356ab26458aSBarry Smith } 357ab26458aSBarry Smith } 358d64ed03dSBarry Smith } else { 359ab26458aSBarry Smith for ( j=0; j<n; j++ ) { 360abef11f7SSatish Balay value = v + j*(stepval+bs)*bs + i*bs; 361abef11f7SSatish Balay col = in[j]*bs; 362abef11f7SSatish Balay for ( k=0; k<bs; k++,col++,value+=stepval) { 363abef11f7SSatish Balay for ( row = im[i]*bs,l=0; l<bs; l++,row++) { 364abef11f7SSatish Balay ierr = StashValues_Private(&baij->stash,row,1,&col,value++,addv);CHKERRQ(ierr); 365ab26458aSBarry Smith } 366ab26458aSBarry Smith } 367ab26458aSBarry Smith } 368abef11f7SSatish Balay } 369abef11f7SSatish Balay } 370ab26458aSBarry Smith } 371ab26458aSBarry Smith } 3723a40ed3dSBarry Smith PetscFunctionReturn(0); 373ab26458aSBarry Smith } 3740bdbc534SSatish Balay #include <math.h> 3750bdbc534SSatish Balay #define HASH_KEY 0.6180339887 376c2760754SSatish Balay /* #define HASH1(size,key) ((int)((size)*fmod(((key)*HASH_KEY),1))) */ 377c2760754SSatish Balay #define HASH(size,key,tmp) (tmp = (key)*HASH_KEY,(int)((size)*(tmp-(int)tmp))) 378c2760754SSatish Balay /* #define HASH(size,key,tmp) ((int)((size)*fmod(((key)*HASH_KEY),1))) */ 3795615d1e5SSatish Balay #undef __FUNC__ 3800bdbc534SSatish Balay #define __FUNC__ "MatSetValues_MPIBAIJ_HT" 3810bdbc534SSatish Balay int MatSetValues_MPIBAIJ_HT(Mat mat,int m,int *im,int n,int *in,Scalar *v,InsertMode addv) 3820bdbc534SSatish Balay { 3830bdbc534SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *) mat->data; 3840bdbc534SSatish Balay int ierr,i,j,row,col; 3850bdbc534SSatish Balay int roworiented = baij->roworiented,rstart_orig=baij->rstart_bs ; 386c2760754SSatish Balay int rend_orig=baij->rend_bs,Nbs=baij->Nbs; 387c2760754SSatish Balay int h1,key,size=baij->ht_size,bs=baij->bs,*HT=baij->ht,idx; 388c2760754SSatish Balay double tmp; 389b9e4cc15SSatish Balay Scalar ** HD = baij->hd,value; 390*4a15367fSSatish Balay #if defined(USE_PETSC_BOPT_g) 391*4a15367fSSatish Balay int total_ct=baij->ht_total_ct,insert_ct=baij->ht_insert_ct; 392*4a15367fSSatish Balay #endif 3930bdbc534SSatish Balay 3940bdbc534SSatish Balay PetscFunctionBegin; 3950bdbc534SSatish Balay 3960bdbc534SSatish Balay for ( i=0; i<m; i++ ) { 3970bdbc534SSatish Balay #if defined(USE_PETSC_BOPT_g) 3980bdbc534SSatish Balay if (im[i] < 0) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Negative row"); 3990bdbc534SSatish Balay if (im[i] >= baij->M) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Row too large"); 4000bdbc534SSatish Balay #endif 4010bdbc534SSatish Balay row = im[i]; 402c2760754SSatish Balay if (row >= rstart_orig && row < rend_orig) { 4030bdbc534SSatish Balay for ( j=0; j<n; j++ ) { 4040bdbc534SSatish Balay col = in[j]; 4050bdbc534SSatish Balay if (roworiented) value = v[i*n+j]; else value = v[i+j*m]; 4060bdbc534SSatish Balay /* Look up into the Hash Table */ 407c2760754SSatish Balay key = (row/bs)*Nbs+(col/bs)+1; 408c2760754SSatish Balay h1 = HASH(size,key,tmp); 4090bdbc534SSatish Balay 410c2760754SSatish Balay 411c2760754SSatish Balay idx = h1; 412187ce0cbSSatish Balay #if defined(USE_PETSC_BOPT_g) 413187ce0cbSSatish Balay insert_ct++; 414187ce0cbSSatish Balay total_ct++; 415187ce0cbSSatish Balay if (HT[idx] != key) { 416187ce0cbSSatish Balay for ( idx=h1; (idx<size) && (HT[idx]!=key); idx++,total_ct++); 417187ce0cbSSatish Balay if (idx == size) { 418187ce0cbSSatish Balay for ( idx=0; (idx<h1) && (HT[idx]!=key); idx++,total_ct++); 419187ce0cbSSatish Balay if (idx == h1) { 420187ce0cbSSatish Balay SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"(row,col) has no entry in the hash table"); 421187ce0cbSSatish Balay } 422187ce0cbSSatish Balay } 423187ce0cbSSatish Balay } 424187ce0cbSSatish Balay #else 425c2760754SSatish Balay if (HT[idx] != key) { 426c2760754SSatish Balay for ( idx=h1; (idx<size) && (HT[idx]!=key); idx++); 427c2760754SSatish Balay if (idx == size) { 428c2760754SSatish Balay for ( idx=0; (idx<h1) && (HT[idx]!=key); idx++); 429c2760754SSatish Balay if (idx == h1) { 430c2760754SSatish Balay SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"(row,col) has no entry in the hash table"); 431c2760754SSatish Balay } 432c2760754SSatish Balay } 433c2760754SSatish Balay } 434187ce0cbSSatish Balay #endif 435c2760754SSatish Balay /* A HASH table entry is found, so insert the values at the correct address */ 436c2760754SSatish Balay if (addv == ADD_VALUES) *(HD[idx]+ (col % bs)*bs + (row % bs)) += value; 437c2760754SSatish Balay else *(HD[idx]+ (col % bs)*bs + (row % bs)) = value; 4380bdbc534SSatish Balay } 4390bdbc534SSatish Balay } else { 4400bdbc534SSatish Balay if (roworiented && !baij->donotstash) { 4410bdbc534SSatish Balay ierr = StashValues_Private(&baij->stash,im[i],n,in,v+i*n,addv);CHKERRQ(ierr); 4420bdbc534SSatish Balay } else { 4430bdbc534SSatish Balay if (!baij->donotstash) { 4440bdbc534SSatish Balay row = im[i]; 4450bdbc534SSatish Balay for ( j=0; j<n; j++ ) { 4460bdbc534SSatish Balay ierr = StashValues_Private(&baij->stash,row,1,in+j,v+i+j*m,addv);CHKERRQ(ierr); 4470bdbc534SSatish Balay } 4480bdbc534SSatish Balay } 4490bdbc534SSatish Balay } 4500bdbc534SSatish Balay } 4510bdbc534SSatish Balay } 452187ce0cbSSatish Balay #if defined(USE_PETSC_BOPT_g) 453187ce0cbSSatish Balay baij->ht_total_ct = total_ct; 454187ce0cbSSatish Balay baij->ht_insert_ct = insert_ct; 455187ce0cbSSatish Balay #endif 4560bdbc534SSatish Balay PetscFunctionReturn(0); 4570bdbc534SSatish Balay } 4580bdbc534SSatish Balay 4590bdbc534SSatish Balay #undef __FUNC__ 4600bdbc534SSatish Balay #define __FUNC__ "MatSetValuesBlocked_MPIBAIJ_HT" 4610bdbc534SSatish Balay int MatSetValuesBlocked_MPIBAIJ_HT(Mat mat,int m,int *im,int n,int *in,Scalar *v,InsertMode addv) 4620bdbc534SSatish Balay { 4630bdbc534SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *) mat->data; 4640bdbc534SSatish Balay int ierr,i,j,ii,jj,row,col,k,l; 4650bdbc534SSatish Balay int roworiented = baij->roworiented,rstart=baij->rstart ; 466b4cc0f5aSSatish Balay int rend=baij->rend,stepval,bs=baij->bs,bs2=baij->bs2; 467c2760754SSatish Balay int h1,key,size=baij->ht_size,idx,*HT=baij->ht,Nbs=baij->Nbs; 468c2760754SSatish Balay double tmp; 469187ce0cbSSatish Balay Scalar ** HD = baij->hd,*value,*v_t,*baij_a; 470*4a15367fSSatish Balay #if defined(USE_PETSC_BOPT_g) 471*4a15367fSSatish Balay int total_ct=baij->ht_total_ct,insert_ct=baij->ht_insert_ct; 472*4a15367fSSatish Balay #endif 4730bdbc534SSatish Balay 474d0a41580SSatish Balay PetscFunctionBegin; 475d0a41580SSatish Balay 4760bdbc534SSatish Balay if (roworiented) { 4770bdbc534SSatish Balay stepval = (n-1)*bs; 4780bdbc534SSatish Balay } else { 4790bdbc534SSatish Balay stepval = (m-1)*bs; 4800bdbc534SSatish Balay } 4810bdbc534SSatish Balay for ( i=0; i<m; i++ ) { 4820bdbc534SSatish Balay #if defined(USE_PETSC_BOPT_g) 4830bdbc534SSatish Balay if (im[i] < 0) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Negative row"); 4840bdbc534SSatish Balay if (im[i] >= baij->Mbs) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Row too large"); 4850bdbc534SSatish Balay #endif 4860bdbc534SSatish Balay row = im[i]; 487187ce0cbSSatish Balay v_t = v + i*bs2; 488c2760754SSatish Balay if (row >= rstart && row < rend) { 4890bdbc534SSatish Balay for ( j=0; j<n; j++ ) { 4900bdbc534SSatish Balay col = in[j]; 4910bdbc534SSatish Balay 4920bdbc534SSatish Balay /* Look up into the Hash Table */ 493c2760754SSatish Balay key = row*Nbs+col+1; 494c2760754SSatish Balay h1 = HASH(size,key,tmp); 4950bdbc534SSatish Balay 496c2760754SSatish Balay idx = h1; 497187ce0cbSSatish Balay #if defined(USE_PETSC_BOPT_g) 498187ce0cbSSatish Balay total_ct++; 499187ce0cbSSatish Balay insert_ct++; 500187ce0cbSSatish Balay if (HT[idx] != key) { 501187ce0cbSSatish Balay for ( idx=h1; (idx<size) && (HT[idx]!=key); idx++,total_ct++); 502187ce0cbSSatish Balay if (idx == size) { 503187ce0cbSSatish Balay for ( idx=0; (idx<h1) && (HT[idx]!=key); idx++,total_ct++); 504187ce0cbSSatish Balay if (idx == h1) { 505187ce0cbSSatish Balay SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"(row,col) has no entry in the hash table"); 506187ce0cbSSatish Balay } 507187ce0cbSSatish Balay } 508187ce0cbSSatish Balay } 509187ce0cbSSatish Balay #else 510c2760754SSatish Balay if (HT[idx] != key) { 511c2760754SSatish Balay for ( idx=h1; (idx<size) && (HT[idx]!=key); idx++); 512c2760754SSatish Balay if (idx == size) { 513c2760754SSatish Balay for ( idx=0; (idx<h1) && (HT[idx]!=key); idx++); 514c2760754SSatish Balay if (idx == h1) { 515c2760754SSatish Balay SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"(row,col) has no entry in the hash table"); 516c2760754SSatish Balay } 517c2760754SSatish Balay } 518c2760754SSatish Balay } 519187ce0cbSSatish Balay #endif 520c2760754SSatish Balay baij_a = HD[idx]; 5210bdbc534SSatish Balay if (roworiented) { 522c2760754SSatish Balay /*value = v + i*(stepval+bs)*bs + j*bs;*/ 523187ce0cbSSatish Balay /* value = v + (i*(stepval+bs)+j)*bs; */ 524187ce0cbSSatish Balay value = v_t; 525187ce0cbSSatish Balay v_t += bs; 526fef45726SSatish Balay if (addv == ADD_VALUES) { 527c2760754SSatish Balay for ( ii=0; ii<bs; ii++,value+=stepval) { 528c2760754SSatish Balay for ( jj=ii; jj<bs2; jj+=bs ) { 529fef45726SSatish Balay baij_a[jj] += *value++; 530b4cc0f5aSSatish Balay } 531b4cc0f5aSSatish Balay } 532fef45726SSatish Balay } else { 533c2760754SSatish Balay for ( ii=0; ii<bs; ii++,value+=stepval) { 534c2760754SSatish Balay for ( jj=ii; jj<bs2; jj+=bs ) { 535fef45726SSatish Balay baij_a[jj] = *value++; 536fef45726SSatish Balay } 537fef45726SSatish Balay } 538fef45726SSatish Balay } 5390bdbc534SSatish Balay } else { 5400bdbc534SSatish Balay value = v + j*(stepval+bs)*bs + i*bs; 541fef45726SSatish Balay if (addv == ADD_VALUES) { 542b4cc0f5aSSatish Balay for ( ii=0; ii<bs; ii++,value+=stepval,baij_a+=bs ) { 5430bdbc534SSatish Balay for ( jj=0; jj<bs; jj++ ) { 544fef45726SSatish Balay baij_a[jj] += *value++; 545fef45726SSatish Balay } 546fef45726SSatish Balay } 547fef45726SSatish Balay } else { 548fef45726SSatish Balay for ( ii=0; ii<bs; ii++,value+=stepval,baij_a+=bs ) { 549fef45726SSatish Balay for ( jj=0; jj<bs; jj++ ) { 550fef45726SSatish Balay baij_a[jj] = *value++; 551fef45726SSatish Balay } 552b4cc0f5aSSatish Balay } 5530bdbc534SSatish Balay } 5540bdbc534SSatish Balay } 5550bdbc534SSatish Balay } 5560bdbc534SSatish Balay } else { 5570bdbc534SSatish Balay if (!baij->donotstash) { 5580bdbc534SSatish Balay if (roworiented ) { 5590bdbc534SSatish Balay row = im[i]*bs; 5600bdbc534SSatish Balay value = v + i*(stepval+bs)*bs; 5610bdbc534SSatish Balay for ( j=0; j<bs; j++,row++ ) { 5620bdbc534SSatish Balay for ( k=0; k<n; k++ ) { 5630bdbc534SSatish Balay for ( col=in[k]*bs,l=0; l<bs; l++,col++) { 5640bdbc534SSatish Balay ierr = StashValues_Private(&baij->stash,row,1,&col,value++,addv);CHKERRQ(ierr); 5650bdbc534SSatish Balay } 5660bdbc534SSatish Balay } 5670bdbc534SSatish Balay } 5680bdbc534SSatish Balay } else { 5690bdbc534SSatish Balay for ( j=0; j<n; j++ ) { 5700bdbc534SSatish Balay value = v + j*(stepval+bs)*bs + i*bs; 5710bdbc534SSatish Balay col = in[j]*bs; 5720bdbc534SSatish Balay for ( k=0; k<bs; k++,col++,value+=stepval) { 5730bdbc534SSatish Balay for ( row = im[i]*bs,l=0; l<bs; l++,row++) { 5740bdbc534SSatish Balay ierr = StashValues_Private(&baij->stash,row,1,&col,value++,addv);CHKERRQ(ierr); 5750bdbc534SSatish Balay } 5760bdbc534SSatish Balay } 5770bdbc534SSatish Balay } 5780bdbc534SSatish Balay } 5790bdbc534SSatish Balay } 5800bdbc534SSatish Balay } 5810bdbc534SSatish Balay } 582187ce0cbSSatish Balay #if defined(USE_PETSC_BOPT_g) 583187ce0cbSSatish Balay baij->ht_total_ct = total_ct; 584187ce0cbSSatish Balay baij->ht_insert_ct = insert_ct; 585187ce0cbSSatish Balay #endif 5860bdbc534SSatish Balay PetscFunctionReturn(0); 5870bdbc534SSatish Balay } 5880bdbc534SSatish Balay #undef __FUNC__ 5895615d1e5SSatish Balay #define __FUNC__ "MatGetValues_MPIBAIJ" 590ec1ea8d8SLois Curfman McInnes int MatGetValues_MPIBAIJ(Mat mat,int m,int *idxm,int n,int *idxn,Scalar *v) 591d6de1c52SSatish Balay { 592d6de1c52SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *) mat->data; 593d6de1c52SSatish Balay int bs=baij->bs,ierr,i,j, bsrstart = baij->rstart*bs, bsrend = baij->rend*bs; 594d6de1c52SSatish Balay int bscstart = baij->cstart*bs, bscend = baij->cend*bs,row,col; 595d6de1c52SSatish Balay 596d6de1c52SSatish Balay for ( i=0; i<m; i++ ) { 597a8c6a408SBarry Smith if (idxm[i] < 0) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Negative row"); 598a8c6a408SBarry Smith if (idxm[i] >= baij->M) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Row too large"); 599d6de1c52SSatish Balay if (idxm[i] >= bsrstart && idxm[i] < bsrend) { 600d6de1c52SSatish Balay row = idxm[i] - bsrstart; 601d6de1c52SSatish Balay for ( j=0; j<n; j++ ) { 602a8c6a408SBarry Smith if (idxn[j] < 0) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Negative column"); 603a8c6a408SBarry Smith if (idxn[j] >= baij->N) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Column too large"); 604d6de1c52SSatish Balay if (idxn[j] >= bscstart && idxn[j] < bscend){ 605d6de1c52SSatish Balay col = idxn[j] - bscstart; 606d6de1c52SSatish Balay ierr = MatGetValues(baij->A,1,&row,1,&col,v+i*n+j); CHKERRQ(ierr); 607d64ed03dSBarry Smith } else { 608905e6a2fSBarry Smith if (!baij->colmap) { 609905e6a2fSBarry Smith ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 610905e6a2fSBarry Smith } 611e60e1c95SSatish Balay if((baij->colmap[idxn[j]/bs]-1 < 0) || 612dcb20de4SSatish Balay (baij->garray[(baij->colmap[idxn[j]/bs]-1)/bs] != idxn[j]/bs)) *(v+i*n+j) = 0.0; 613d9d09a02SSatish Balay else { 614dcb20de4SSatish Balay col = (baij->colmap[idxn[j]/bs]-1) + idxn[j]%bs; 615d6de1c52SSatish Balay ierr = MatGetValues(baij->B,1,&row,1,&col,v+i*n+j); CHKERRQ(ierr); 616d6de1c52SSatish Balay } 617d6de1c52SSatish Balay } 618d6de1c52SSatish Balay } 619d64ed03dSBarry Smith } else { 620a8c6a408SBarry Smith SETERRQ(PETSC_ERR_SUP,0,"Only local values currently supported"); 621d6de1c52SSatish Balay } 622d6de1c52SSatish Balay } 6233a40ed3dSBarry Smith PetscFunctionReturn(0); 624d6de1c52SSatish Balay } 625d6de1c52SSatish Balay 6265615d1e5SSatish Balay #undef __FUNC__ 6275615d1e5SSatish Balay #define __FUNC__ "MatNorm_MPIBAIJ" 628ec1ea8d8SLois Curfman McInnes int MatNorm_MPIBAIJ(Mat mat,NormType type,double *norm) 629d6de1c52SSatish Balay { 630d6de1c52SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *) mat->data; 631d6de1c52SSatish Balay Mat_SeqBAIJ *amat = (Mat_SeqBAIJ*) baij->A->data, *bmat = (Mat_SeqBAIJ*) baij->B->data; 632acdf5bf4SSatish Balay int ierr, i,bs2=baij->bs2; 633d6de1c52SSatish Balay double sum = 0.0; 634d6de1c52SSatish Balay Scalar *v; 635d6de1c52SSatish Balay 636d64ed03dSBarry Smith PetscFunctionBegin; 637d6de1c52SSatish Balay if (baij->size == 1) { 638d6de1c52SSatish Balay ierr = MatNorm(baij->A,type,norm); CHKERRQ(ierr); 639d6de1c52SSatish Balay } else { 640d6de1c52SSatish Balay if (type == NORM_FROBENIUS) { 641d6de1c52SSatish Balay v = amat->a; 642d6de1c52SSatish Balay for (i=0; i<amat->nz*bs2; i++ ) { 6433a40ed3dSBarry Smith #if defined(USE_PETSC_COMPLEX) 644d6de1c52SSatish Balay sum += real(conj(*v)*(*v)); v++; 645d6de1c52SSatish Balay #else 646d6de1c52SSatish Balay sum += (*v)*(*v); v++; 647d6de1c52SSatish Balay #endif 648d6de1c52SSatish Balay } 649d6de1c52SSatish Balay v = bmat->a; 650d6de1c52SSatish Balay for (i=0; i<bmat->nz*bs2; i++ ) { 6513a40ed3dSBarry Smith #if defined(USE_PETSC_COMPLEX) 652d6de1c52SSatish Balay sum += real(conj(*v)*(*v)); v++; 653d6de1c52SSatish Balay #else 654d6de1c52SSatish Balay sum += (*v)*(*v); v++; 655d6de1c52SSatish Balay #endif 656d6de1c52SSatish Balay } 657ca161407SBarry Smith ierr = MPI_Allreduce(&sum,norm,1,MPI_DOUBLE,MPI_SUM,mat->comm);CHKERRQ(ierr); 658d6de1c52SSatish Balay *norm = sqrt(*norm); 659d64ed03dSBarry Smith } else { 660e3372554SBarry Smith SETERRQ(PETSC_ERR_SUP,0,"No support for this norm yet"); 661d6de1c52SSatish Balay } 662d64ed03dSBarry Smith } 6633a40ed3dSBarry Smith PetscFunctionReturn(0); 664d6de1c52SSatish Balay } 66557b952d6SSatish Balay 6665615d1e5SSatish Balay #undef __FUNC__ 6675615d1e5SSatish Balay #define __FUNC__ "MatAssemblyBegin_MPIBAIJ" 668ec1ea8d8SLois Curfman McInnes int MatAssemblyBegin_MPIBAIJ(Mat mat,MatAssemblyType mode) 66957b952d6SSatish Balay { 67057b952d6SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *) mat->data; 67157b952d6SSatish Balay MPI_Comm comm = mat->comm; 67257b952d6SSatish Balay int size = baij->size, *owners = baij->rowners,bs=baij->bs; 67357b952d6SSatish Balay int rank = baij->rank,tag = mat->tag, *owner,*starts,count,ierr; 67457b952d6SSatish Balay MPI_Request *send_waits,*recv_waits; 67557b952d6SSatish Balay int *nprocs,i,j,idx,*procs,nsends,nreceives,nmax,*work; 67657b952d6SSatish Balay InsertMode addv; 67757b952d6SSatish Balay Scalar *rvalues,*svalues; 67857b952d6SSatish Balay 679d64ed03dSBarry Smith PetscFunctionBegin; 68057b952d6SSatish Balay /* make sure all processors are either in INSERTMODE or ADDMODE */ 681ca161407SBarry Smith ierr = MPI_Allreduce(&mat->insertmode,&addv,1,MPI_INT,MPI_BOR,comm);CHKERRQ(ierr); 68257b952d6SSatish Balay if (addv == (ADD_VALUES|INSERT_VALUES)) { 683a8c6a408SBarry Smith SETERRQ(PETSC_ERR_ARG_WRONGSTATE,0,"Some processors inserted others added"); 68457b952d6SSatish Balay } 685e0fa3b82SLois Curfman McInnes mat->insertmode = addv; /* in case this processor had no cache */ 68657b952d6SSatish Balay 68757b952d6SSatish Balay /* first count number of contributors to each processor */ 68857b952d6SSatish Balay nprocs = (int *) PetscMalloc( 2*size*sizeof(int) ); CHKPTRQ(nprocs); 68957b952d6SSatish Balay PetscMemzero(nprocs,2*size*sizeof(int)); procs = nprocs + size; 69057b952d6SSatish Balay owner = (int *) PetscMalloc( (baij->stash.n+1)*sizeof(int) ); CHKPTRQ(owner); 69157b952d6SSatish Balay for ( i=0; i<baij->stash.n; i++ ) { 69257b952d6SSatish Balay idx = baij->stash.idx[i]; 69357b952d6SSatish Balay for ( j=0; j<size; j++ ) { 69457b952d6SSatish Balay if (idx >= owners[j]*bs && idx < owners[j+1]*bs) { 69557b952d6SSatish Balay nprocs[j]++; procs[j] = 1; owner[i] = j; break; 69657b952d6SSatish Balay } 69757b952d6SSatish Balay } 69857b952d6SSatish Balay } 69957b952d6SSatish Balay nsends = 0; for ( i=0; i<size; i++ ) { nsends += procs[i];} 70057b952d6SSatish Balay 70157b952d6SSatish Balay /* inform other processors of number of messages and max length*/ 70257b952d6SSatish Balay work = (int *) PetscMalloc( size*sizeof(int) ); CHKPTRQ(work); 703ca161407SBarry Smith ierr = MPI_Allreduce(procs, work,size,MPI_INT,MPI_SUM,comm);CHKERRQ(ierr); 70457b952d6SSatish Balay nreceives = work[rank]; 705ca161407SBarry Smith ierr = MPI_Allreduce( nprocs, work,size,MPI_INT,MPI_MAX,comm);CHKERRQ(ierr); 70657b952d6SSatish Balay nmax = work[rank]; 70757b952d6SSatish Balay PetscFree(work); 70857b952d6SSatish Balay 70957b952d6SSatish Balay /* post receives: 71057b952d6SSatish Balay 1) each message will consist of ordered pairs 71157b952d6SSatish Balay (global index,value) we store the global index as a double 71257b952d6SSatish Balay to simplify the message passing. 71357b952d6SSatish Balay 2) since we don't know how long each individual message is we 71457b952d6SSatish Balay allocate the largest needed buffer for each receive. Potentially 71557b952d6SSatish Balay this is a lot of wasted space. 71657b952d6SSatish Balay 71757b952d6SSatish Balay 71857b952d6SSatish Balay This could be done better. 71957b952d6SSatish Balay */ 720f8abc2e8SBarry Smith rvalues = (Scalar *) PetscMalloc(3*(nreceives+1)*(nmax+1)*sizeof(Scalar));CHKPTRQ(rvalues); 721f8abc2e8SBarry Smith recv_waits = (MPI_Request *) PetscMalloc((nreceives+1)*sizeof(MPI_Request));CHKPTRQ(recv_waits); 72257b952d6SSatish Balay for ( i=0; i<nreceives; i++ ) { 723ca161407SBarry Smith ierr = MPI_Irecv(rvalues+3*nmax*i,3*nmax,MPIU_SCALAR,MPI_ANY_SOURCE,tag,comm,recv_waits+i);CHKERRQ(ierr); 72457b952d6SSatish Balay } 72557b952d6SSatish Balay 72657b952d6SSatish Balay /* do sends: 72757b952d6SSatish Balay 1) starts[i] gives the starting index in svalues for stuff going to 72857b952d6SSatish Balay the ith processor 72957b952d6SSatish Balay */ 73057b952d6SSatish Balay svalues = (Scalar *) PetscMalloc(3*(baij->stash.n+1)*sizeof(Scalar));CHKPTRQ(svalues); 731d64ed03dSBarry Smith send_waits = (MPI_Request *) PetscMalloc((nsends+1)*sizeof(MPI_Request));CHKPTRQ(send_waits); 73257b952d6SSatish Balay starts = (int *) PetscMalloc( size*sizeof(int) ); CHKPTRQ(starts); 73357b952d6SSatish Balay starts[0] = 0; 73457b952d6SSatish Balay for ( i=1; i<size; i++ ) { starts[i] = starts[i-1] + nprocs[i-1];} 73557b952d6SSatish Balay for ( i=0; i<baij->stash.n; i++ ) { 73657b952d6SSatish Balay svalues[3*starts[owner[i]]] = (Scalar) baij->stash.idx[i]; 73757b952d6SSatish Balay svalues[3*starts[owner[i]]+1] = (Scalar) baij->stash.idy[i]; 73857b952d6SSatish Balay svalues[3*(starts[owner[i]]++)+2] = baij->stash.array[i]; 73957b952d6SSatish Balay } 74057b952d6SSatish Balay PetscFree(owner); 74157b952d6SSatish Balay starts[0] = 0; 74257b952d6SSatish Balay for ( i=1; i<size; i++ ) { starts[i] = starts[i-1] + nprocs[i-1];} 74357b952d6SSatish Balay count = 0; 74457b952d6SSatish Balay for ( i=0; i<size; i++ ) { 74557b952d6SSatish Balay if (procs[i]) { 746ca161407SBarry Smith ierr = MPI_Isend(svalues+3*starts[i],3*nprocs[i],MPIU_SCALAR,i,tag,comm,send_waits+count++);CHKERRQ(ierr); 74757b952d6SSatish Balay } 74857b952d6SSatish Balay } 74957b952d6SSatish Balay PetscFree(starts); PetscFree(nprocs); 75057b952d6SSatish Balay 75157b952d6SSatish Balay /* Free cache space */ 752187ce0cbSSatish Balay PLogInfo(0,"MatAssemblyBegin_MPIBAIJ:Number of off-processor values %d\n",baij->stash.n); 75357b952d6SSatish Balay ierr = StashDestroy_Private(&baij->stash); CHKERRQ(ierr); 75457b952d6SSatish Balay 75557b952d6SSatish Balay baij->svalues = svalues; baij->rvalues = rvalues; 75657b952d6SSatish Balay baij->nsends = nsends; baij->nrecvs = nreceives; 75757b952d6SSatish Balay baij->send_waits = send_waits; baij->recv_waits = recv_waits; 75857b952d6SSatish Balay baij->rmax = nmax; 75957b952d6SSatish Balay 7603a40ed3dSBarry Smith PetscFunctionReturn(0); 76157b952d6SSatish Balay } 762bd7f49f5SSatish Balay 763fef45726SSatish Balay /* 764fef45726SSatish Balay Creates the hash table, and sets the table 765fef45726SSatish Balay This table is created only once. 766fef45726SSatish Balay If new entried need to be added to the matrix 767fef45726SSatish Balay then the hash table has to be destroyed and 768fef45726SSatish Balay recreated. 769fef45726SSatish Balay */ 770fef45726SSatish Balay #undef __FUNC__ 771fef45726SSatish Balay #define __FUNC__ "MatCreateHashTable_MPIBAIJ_Private" 772d0a41580SSatish Balay int MatCreateHashTable_MPIBAIJ_Private(Mat mat,double factor) 773596b8d2eSBarry Smith { 774596b8d2eSBarry Smith Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *) mat->data; 775596b8d2eSBarry Smith Mat A = baij->A, B=baij->B; 776596b8d2eSBarry Smith Mat_SeqBAIJ *a=(Mat_SeqBAIJ *)A->data, *b=(Mat_SeqBAIJ *)B->data; 7770bdbc534SSatish Balay int i,j,k,nz=a->nz+b->nz,h1,*ai=a->i,*aj=a->j,*bi=b->i,*bj=b->j; 778*4a15367fSSatish Balay int size,bs2=baij->bs2,rstart=baij->rstart; 779187ce0cbSSatish Balay int cstart=baij->cstart,*garray=baij->garray,row,col,Nbs=baij->Nbs; 780fef45726SSatish Balay int *HT,key; 7810bdbc534SSatish Balay Scalar **HD; 782c2760754SSatish Balay double tmp; 783*4a15367fSSatish Balay #if defined(USE_PETSC_BOPT_g) 784*4a15367fSSatish Balay int ct=0,max=0; 785*4a15367fSSatish Balay #endif 786fef45726SSatish Balay 787d64ed03dSBarry Smith PetscFunctionBegin; 7880bdbc534SSatish Balay baij->ht_size=(int)(factor*nz); 7890bdbc534SSatish Balay size = baij->ht_size; 790fef45726SSatish Balay 7910bdbc534SSatish Balay if (baij->ht) { 7920bdbc534SSatish Balay PetscFunctionReturn(0); 793596b8d2eSBarry Smith } 7940bdbc534SSatish Balay 795fef45726SSatish Balay /* Allocate Memory for Hash Table */ 796b9e4cc15SSatish Balay baij->hd = (Scalar**)PetscMalloc((size)*(sizeof(int)+sizeof(Scalar*))+1); CHKPTRQ(baij->hd); 797b9e4cc15SSatish Balay baij->ht = (int*)(baij->hd + size); 798b9e4cc15SSatish Balay HD = baij->hd; 799a07cd24cSSatish Balay HT = baij->ht; 800b9e4cc15SSatish Balay 801b9e4cc15SSatish Balay 802c2760754SSatish Balay PetscMemzero(HD,size*(sizeof(int)+sizeof(Scalar*))); 8030bdbc534SSatish Balay 804596b8d2eSBarry Smith 805596b8d2eSBarry Smith /* Loop Over A */ 8060bdbc534SSatish Balay for ( i=0; i<a->mbs; i++ ) { 807596b8d2eSBarry Smith for ( j=ai[i]; j<ai[i+1]; j++ ) { 8080bdbc534SSatish Balay row = i+rstart; 8090bdbc534SSatish Balay col = aj[j]+cstart; 810596b8d2eSBarry Smith 811187ce0cbSSatish Balay key = row*Nbs + col + 1; 812c2760754SSatish Balay h1 = HASH(size,key,tmp); 8130bdbc534SSatish Balay for ( k=0; k<size; k++ ){ 8140bdbc534SSatish Balay if (HT[(h1+k)%size] == 0.0) { 8150bdbc534SSatish Balay HT[(h1+k)%size] = key; 8160bdbc534SSatish Balay HD[(h1+k)%size] = a->a + j*bs2; 817596b8d2eSBarry Smith break; 818187ce0cbSSatish Balay #if defined(USE_PETSC_BOPT_g) 819187ce0cbSSatish Balay } else { 820187ce0cbSSatish Balay ct++; 821187ce0cbSSatish Balay #endif 822596b8d2eSBarry Smith } 823187ce0cbSSatish Balay } 824187ce0cbSSatish Balay #if defined(USE_PETSC_BOPT_g) 825187ce0cbSSatish Balay if (k> max) max = k; 826187ce0cbSSatish Balay #endif 827596b8d2eSBarry Smith } 828596b8d2eSBarry Smith } 829596b8d2eSBarry Smith /* Loop Over B */ 8300bdbc534SSatish Balay for ( i=0; i<b->mbs; i++ ) { 831596b8d2eSBarry Smith for ( j=bi[i]; j<bi[i+1]; j++ ) { 8320bdbc534SSatish Balay row = i+rstart; 8330bdbc534SSatish Balay col = garray[bj[j]]; 834187ce0cbSSatish Balay key = row*Nbs + col + 1; 835c2760754SSatish Balay h1 = HASH(size,key,tmp); 8360bdbc534SSatish Balay for ( k=0; k<size; k++ ){ 8370bdbc534SSatish Balay if (HT[(h1+k)%size] == 0.0) { 8380bdbc534SSatish Balay HT[(h1+k)%size] = key; 8390bdbc534SSatish Balay HD[(h1+k)%size] = b->a + j*bs2; 840596b8d2eSBarry Smith break; 841187ce0cbSSatish Balay #if defined(USE_PETSC_BOPT_g) 842187ce0cbSSatish Balay } else { 843187ce0cbSSatish Balay ct++; 844187ce0cbSSatish Balay #endif 845596b8d2eSBarry Smith } 846187ce0cbSSatish Balay } 847187ce0cbSSatish Balay #if defined(USE_PETSC_BOPT_g) 848187ce0cbSSatish Balay if (k> max) max = k; 849187ce0cbSSatish Balay #endif 850596b8d2eSBarry Smith } 851596b8d2eSBarry Smith } 852596b8d2eSBarry Smith 853596b8d2eSBarry Smith /* Print Summary */ 854187ce0cbSSatish Balay #if defined(USE_PETSC_BOPT_g) 855c2760754SSatish Balay for ( i=0,j=0; i<size; i++) 856596b8d2eSBarry Smith if (HT[i]) {j++;} 857187ce0cbSSatish Balay PLogInfo(0,"MatCreateHashTable_MPIBAIJ_Private: Average Search = %5.2f,max search = %d\n", 858187ce0cbSSatish Balay (j== 0)? 0.0:((double)(ct+j))/j,max); 859187ce0cbSSatish Balay #endif 8603a40ed3dSBarry Smith PetscFunctionReturn(0); 861596b8d2eSBarry Smith } 86257b952d6SSatish Balay 8635615d1e5SSatish Balay #undef __FUNC__ 8645615d1e5SSatish Balay #define __FUNC__ "MatAssemblyEnd_MPIBAIJ" 865ec1ea8d8SLois Curfman McInnes int MatAssemblyEnd_MPIBAIJ(Mat mat,MatAssemblyType mode) 86657b952d6SSatish Balay { 86757b952d6SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *) mat->data; 86857b952d6SSatish Balay MPI_Status *send_status,recv_status; 86957b952d6SSatish Balay int imdex,nrecvs = baij->nrecvs, count = nrecvs, i, n, ierr; 870596b8d2eSBarry Smith int bs=baij->bs,row,col,other_disassembled,flg; 87157b952d6SSatish Balay Scalar *values,val; 872e0fa3b82SLois Curfman McInnes InsertMode addv = mat->insertmode; 87357b952d6SSatish Balay 874d64ed03dSBarry Smith PetscFunctionBegin; 87557b952d6SSatish Balay /* wait on receives */ 87657b952d6SSatish Balay while (count) { 877ca161407SBarry Smith ierr = MPI_Waitany(nrecvs,baij->recv_waits,&imdex,&recv_status);CHKERRQ(ierr); 87857b952d6SSatish Balay /* unpack receives into our local space */ 87957b952d6SSatish Balay values = baij->rvalues + 3*imdex*baij->rmax; 880ca161407SBarry Smith ierr = MPI_Get_count(&recv_status,MPIU_SCALAR,&n);CHKERRQ(ierr); 88157b952d6SSatish Balay n = n/3; 88257b952d6SSatish Balay for ( i=0; i<n; i++ ) { 88357b952d6SSatish Balay row = (int) PetscReal(values[3*i]) - baij->rstart*bs; 88457b952d6SSatish Balay col = (int) PetscReal(values[3*i+1]); 88557b952d6SSatish Balay val = values[3*i+2]; 88657b952d6SSatish Balay if (col >= baij->cstart*bs && col < baij->cend*bs) { 88757b952d6SSatish Balay col -= baij->cstart*bs; 8886fd7127cSSatish Balay ierr = MatSetValues(baij->A,1,&row,1,&col,&val,addv); CHKERRQ(ierr) 889d64ed03dSBarry Smith } else { 89057b952d6SSatish Balay if (mat->was_assembled) { 891905e6a2fSBarry Smith if (!baij->colmap) { 892905e6a2fSBarry Smith ierr = CreateColmap_MPIBAIJ_Private(mat); CHKERRQ(ierr); 893905e6a2fSBarry Smith } 894a5eb4965SSatish Balay col = (baij->colmap[col/bs]) - 1 + col%bs; 89557b952d6SSatish Balay if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) { 89657b952d6SSatish Balay ierr = DisAssemble_MPIBAIJ(mat); CHKERRQ(ierr); 89757b952d6SSatish Balay col = (int) PetscReal(values[3*i+1]); 89857b952d6SSatish Balay } 89957b952d6SSatish Balay } 9006fd7127cSSatish Balay ierr = MatSetValues(baij->B,1,&row,1,&col,&val,addv); CHKERRQ(ierr) 90157b952d6SSatish Balay } 90257b952d6SSatish Balay } 90357b952d6SSatish Balay count--; 90457b952d6SSatish Balay } 90557b952d6SSatish Balay PetscFree(baij->recv_waits); PetscFree(baij->rvalues); 90657b952d6SSatish Balay 90757b952d6SSatish Balay /* wait on sends */ 90857b952d6SSatish Balay if (baij->nsends) { 909d64ed03dSBarry Smith send_status = (MPI_Status *) PetscMalloc(baij->nsends*sizeof(MPI_Status));CHKPTRQ(send_status); 910ca161407SBarry Smith ierr = MPI_Waitall(baij->nsends,baij->send_waits,send_status);CHKERRQ(ierr); 91157b952d6SSatish Balay PetscFree(send_status); 91257b952d6SSatish Balay } 91357b952d6SSatish Balay PetscFree(baij->send_waits); PetscFree(baij->svalues); 91457b952d6SSatish Balay 91557b952d6SSatish Balay ierr = MatAssemblyBegin(baij->A,mode); CHKERRQ(ierr); 91657b952d6SSatish Balay ierr = MatAssemblyEnd(baij->A,mode); CHKERRQ(ierr); 91757b952d6SSatish Balay 91857b952d6SSatish Balay /* determine if any processor has disassembled, if so we must 91957b952d6SSatish Balay also disassemble ourselfs, in order that we may reassemble. */ 920ca161407SBarry Smith ierr = MPI_Allreduce(&mat->was_assembled,&other_disassembled,1,MPI_INT,MPI_PROD,mat->comm);CHKERRQ(ierr); 92157b952d6SSatish Balay if (mat->was_assembled && !other_disassembled) { 92257b952d6SSatish Balay ierr = DisAssemble_MPIBAIJ(mat); CHKERRQ(ierr); 92357b952d6SSatish Balay } 92457b952d6SSatish Balay 9256d4a8577SBarry Smith if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) { 92657b952d6SSatish Balay ierr = MatSetUpMultiply_MPIBAIJ(mat); CHKERRQ(ierr); 92757b952d6SSatish Balay } 92857b952d6SSatish Balay ierr = MatAssemblyBegin(baij->B,mode); CHKERRQ(ierr); 92957b952d6SSatish Balay ierr = MatAssemblyEnd(baij->B,mode); CHKERRQ(ierr); 93057b952d6SSatish Balay 931187ce0cbSSatish Balay #if defined(USE_PETSC_BOPT_g) 932187ce0cbSSatish Balay if (baij->ht && mode== MAT_FINAL_ASSEMBLY) { 933187ce0cbSSatish Balay PLogInfo(0,"MatAssemblyEnd_MPIBAIJ:Average Hash Table Search in MatSetValues = %5.2f\n", 934187ce0cbSSatish Balay ((double)baij->ht_total_ct)/baij->ht_insert_ct); 935187ce0cbSSatish Balay baij->ht_total_ct = 0; 936187ce0cbSSatish Balay baij->ht_insert_ct = 0; 937187ce0cbSSatish Balay } 938187ce0cbSSatish Balay #endif 939596b8d2eSBarry Smith ierr = OptionsHasName(PETSC_NULL,"-use_hash",&flg); CHKERRQ(ierr); 94044e6884eSSatish Balay if (flg && !baij->ht && mode== MAT_FINAL_ASSEMBLY) { 941a07cd24cSSatish Balay double fact = 1.39; 942fef45726SSatish Balay ierr = OptionsGetDouble(PETSC_NULL,"-use_hash",&fact,&flg); CHKERRQ(ierr); 943a74b47caSSatish Balay if (fact <= 1.0) fact = 1.39; 944187ce0cbSSatish Balay PLogInfo(0,"MatAssemblyEnd_MPIBAIJ:Hash table Factor used %5.2f\n",fact); 945fef45726SSatish Balay ierr = MatCreateHashTable_MPIBAIJ_Private(mat,fact); CHKERRQ(ierr); 9460bdbc534SSatish Balay mat->ops.setvalues = MatSetValues_MPIBAIJ_HT; 9470bdbc534SSatish Balay mat->ops.setvaluesblocked = MatSetValuesBlocked_MPIBAIJ_HT; 948bd7f49f5SSatish Balay } 949187ce0cbSSatish Balay 95057b952d6SSatish Balay if (baij->rowvalues) {PetscFree(baij->rowvalues); baij->rowvalues = 0;} 9513a40ed3dSBarry Smith PetscFunctionReturn(0); 95257b952d6SSatish Balay } 95357b952d6SSatish Balay 9545615d1e5SSatish Balay #undef __FUNC__ 9555615d1e5SSatish Balay #define __FUNC__ "MatView_MPIBAIJ_Binary" 95657b952d6SSatish Balay static int MatView_MPIBAIJ_Binary(Mat mat,Viewer viewer) 95757b952d6SSatish Balay { 95857b952d6SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *) mat->data; 95957b952d6SSatish Balay int ierr; 96057b952d6SSatish Balay 961d64ed03dSBarry Smith PetscFunctionBegin; 96257b952d6SSatish Balay if (baij->size == 1) { 96357b952d6SSatish Balay ierr = MatView(baij->A,viewer); CHKERRQ(ierr); 964a8c6a408SBarry Smith } else SETERRQ(PETSC_ERR_SUP,0,"Only uniprocessor output supported"); 9653a40ed3dSBarry Smith PetscFunctionReturn(0); 96657b952d6SSatish Balay } 96757b952d6SSatish Balay 9685615d1e5SSatish Balay #undef __FUNC__ 9695615d1e5SSatish Balay #define __FUNC__ "MatView_MPIBAIJ_ASCIIorDraworMatlab" 97057b952d6SSatish Balay static int MatView_MPIBAIJ_ASCIIorDraworMatlab(Mat mat,Viewer viewer) 97157b952d6SSatish Balay { 97257b952d6SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *) mat->data; 973cee3aa6bSSatish Balay int ierr, format,rank,bs = baij->bs; 97457b952d6SSatish Balay FILE *fd; 97557b952d6SSatish Balay ViewerType vtype; 97657b952d6SSatish Balay 977d64ed03dSBarry Smith PetscFunctionBegin; 97857b952d6SSatish Balay ierr = ViewerGetType(viewer,&vtype); CHKERRQ(ierr); 97957b952d6SSatish Balay if (vtype == ASCII_FILES_VIEWER || vtype == ASCII_FILE_VIEWER) { 98057b952d6SSatish Balay ierr = ViewerGetFormat(viewer,&format); 981639f9d9dSBarry Smith if (format == VIEWER_FORMAT_ASCII_INFO_LONG) { 9824e220ebcSLois Curfman McInnes MatInfo info; 98357b952d6SSatish Balay MPI_Comm_rank(mat->comm,&rank); 98457b952d6SSatish Balay ierr = ViewerASCIIGetPointer(viewer,&fd); CHKERRQ(ierr); 9854e220ebcSLois Curfman McInnes ierr = MatGetInfo(mat,MAT_LOCAL,&info); 98657b952d6SSatish Balay PetscSequentialPhaseBegin(mat->comm,1); 98757b952d6SSatish Balay fprintf(fd,"[%d] Local rows %d nz %d nz alloced %d bs %d mem %d\n", 9884e220ebcSLois Curfman McInnes rank,baij->m,(int)info.nz_used*bs,(int)info.nz_allocated*bs, 9894e220ebcSLois Curfman McInnes baij->bs,(int)info.memory); 9904e220ebcSLois Curfman McInnes ierr = MatGetInfo(baij->A,MAT_LOCAL,&info); 9914e220ebcSLois Curfman McInnes fprintf(fd,"[%d] on-diagonal part: nz %d \n",rank,(int)info.nz_used*bs); 9924e220ebcSLois Curfman McInnes ierr = MatGetInfo(baij->B,MAT_LOCAL,&info); 9934e220ebcSLois Curfman McInnes fprintf(fd,"[%d] off-diagonal part: nz %d \n",rank,(int)info.nz_used*bs); 99457b952d6SSatish Balay fflush(fd); 99557b952d6SSatish Balay PetscSequentialPhaseEnd(mat->comm,1); 99657b952d6SSatish Balay ierr = VecScatterView(baij->Mvctx,viewer); CHKERRQ(ierr); 9973a40ed3dSBarry Smith PetscFunctionReturn(0); 998d64ed03dSBarry Smith } else if (format == VIEWER_FORMAT_ASCII_INFO) { 999bcc3fcf6SBarry Smith PetscPrintf(mat->comm," block size is %d\n",bs); 10003a40ed3dSBarry Smith PetscFunctionReturn(0); 100157b952d6SSatish Balay } 100257b952d6SSatish Balay } 100357b952d6SSatish Balay 100457b952d6SSatish Balay if (vtype == DRAW_VIEWER) { 100557b952d6SSatish Balay Draw draw; 100657b952d6SSatish Balay PetscTruth isnull; 100757b952d6SSatish Balay ierr = ViewerDrawGetDraw(viewer,&draw); CHKERRQ(ierr); 10083a40ed3dSBarry Smith ierr = DrawIsNull(draw,&isnull); CHKERRQ(ierr); if (isnull) PetscFunctionReturn(0); 100957b952d6SSatish Balay } 101057b952d6SSatish Balay 101157b952d6SSatish Balay if (vtype == ASCII_FILE_VIEWER) { 101257b952d6SSatish Balay ierr = ViewerASCIIGetPointer(viewer,&fd); CHKERRQ(ierr); 101357b952d6SSatish Balay PetscSequentialPhaseBegin(mat->comm,1); 101457b952d6SSatish Balay fprintf(fd,"[%d] rows %d starts %d ends %d cols %d starts %d ends %d\n", 101557b952d6SSatish Balay baij->rank,baij->m,baij->rstart*bs,baij->rend*bs,baij->n, 101657b952d6SSatish Balay baij->cstart*bs,baij->cend*bs); 101757b952d6SSatish Balay ierr = MatView(baij->A,viewer); CHKERRQ(ierr); 101857b952d6SSatish Balay ierr = MatView(baij->B,viewer); CHKERRQ(ierr); 101957b952d6SSatish Balay fflush(fd); 102057b952d6SSatish Balay PetscSequentialPhaseEnd(mat->comm,1); 1021d64ed03dSBarry Smith } else { 102257b952d6SSatish Balay int size = baij->size; 102357b952d6SSatish Balay rank = baij->rank; 102457b952d6SSatish Balay if (size == 1) { 102557b952d6SSatish Balay ierr = MatView(baij->A,viewer); CHKERRQ(ierr); 1026d64ed03dSBarry Smith } else { 102757b952d6SSatish Balay /* assemble the entire matrix onto first processor. */ 102857b952d6SSatish Balay Mat A; 102957b952d6SSatish Balay Mat_SeqBAIJ *Aloc; 103057b952d6SSatish Balay int M = baij->M, N = baij->N,*ai,*aj,row,col,i,j,k,*rvals; 103157b952d6SSatish Balay int mbs=baij->mbs; 103257b952d6SSatish Balay Scalar *a; 103357b952d6SSatish Balay 103457b952d6SSatish Balay if (!rank) { 103555843e3eSBarry Smith ierr = MatCreateMPIBAIJ(mat->comm,baij->bs,M,N,M,N,0,PETSC_NULL,0,PETSC_NULL,&A);CHKERRQ(ierr); 1036d64ed03dSBarry Smith } else { 103755843e3eSBarry Smith ierr = MatCreateMPIBAIJ(mat->comm,baij->bs,0,0,M,N,0,PETSC_NULL,0,PETSC_NULL,&A);CHKERRQ(ierr); 103857b952d6SSatish Balay } 103957b952d6SSatish Balay PLogObjectParent(mat,A); 104057b952d6SSatish Balay 104157b952d6SSatish Balay /* copy over the A part */ 104257b952d6SSatish Balay Aloc = (Mat_SeqBAIJ*) baij->A->data; 104357b952d6SSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 104457b952d6SSatish Balay row = baij->rstart; 104557b952d6SSatish Balay rvals = (int *) PetscMalloc(bs*sizeof(int)); CHKPTRQ(rvals); 104657b952d6SSatish Balay 104757b952d6SSatish Balay for ( i=0; i<mbs; i++ ) { 104857b952d6SSatish Balay rvals[0] = bs*(baij->rstart + i); 104957b952d6SSatish Balay for ( j=1; j<bs; j++ ) { rvals[j] = rvals[j-1] + 1; } 105057b952d6SSatish Balay for ( j=ai[i]; j<ai[i+1]; j++ ) { 105157b952d6SSatish Balay col = (baij->cstart+aj[j])*bs; 105257b952d6SSatish Balay for (k=0; k<bs; k++ ) { 1053cee3aa6bSSatish Balay ierr = MatSetValues(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 1054cee3aa6bSSatish Balay col++; a += bs; 105557b952d6SSatish Balay } 105657b952d6SSatish Balay } 105757b952d6SSatish Balay } 105857b952d6SSatish Balay /* copy over the B part */ 105957b952d6SSatish Balay Aloc = (Mat_SeqBAIJ*) baij->B->data; 106057b952d6SSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 106157b952d6SSatish Balay row = baij->rstart*bs; 106257b952d6SSatish Balay for ( i=0; i<mbs; i++ ) { 106357b952d6SSatish Balay rvals[0] = bs*(baij->rstart + i); 106457b952d6SSatish Balay for ( j=1; j<bs; j++ ) { rvals[j] = rvals[j-1] + 1; } 106557b952d6SSatish Balay for ( j=ai[i]; j<ai[i+1]; j++ ) { 106657b952d6SSatish Balay col = baij->garray[aj[j]]*bs; 106757b952d6SSatish Balay for (k=0; k<bs; k++ ) { 1068cee3aa6bSSatish Balay ierr = MatSetValues(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 1069cee3aa6bSSatish Balay col++; a += bs; 107057b952d6SSatish Balay } 107157b952d6SSatish Balay } 107257b952d6SSatish Balay } 107357b952d6SSatish Balay PetscFree(rvals); 10746d4a8577SBarry Smith ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY); CHKERRQ(ierr); 10756d4a8577SBarry Smith ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY); CHKERRQ(ierr); 107655843e3eSBarry Smith /* 107755843e3eSBarry Smith Everyone has to call to draw the matrix since the graphics waits are 107855843e3eSBarry Smith synchronized across all processors that share the Draw object 107955843e3eSBarry Smith */ 108055843e3eSBarry Smith if (!rank || vtype == DRAW_VIEWER) { 108157b952d6SSatish Balay ierr = MatView(((Mat_MPIBAIJ*)(A->data))->A,viewer); CHKERRQ(ierr); 108257b952d6SSatish Balay } 108357b952d6SSatish Balay ierr = MatDestroy(A); CHKERRQ(ierr); 108457b952d6SSatish Balay } 108557b952d6SSatish Balay } 10863a40ed3dSBarry Smith PetscFunctionReturn(0); 108757b952d6SSatish Balay } 108857b952d6SSatish Balay 108957b952d6SSatish Balay 109057b952d6SSatish Balay 10915615d1e5SSatish Balay #undef __FUNC__ 10925615d1e5SSatish Balay #define __FUNC__ "MatView_MPIBAIJ" 1093ec1ea8d8SLois Curfman McInnes int MatView_MPIBAIJ(PetscObject obj,Viewer viewer) 109457b952d6SSatish Balay { 109557b952d6SSatish Balay Mat mat = (Mat) obj; 109657b952d6SSatish Balay int ierr; 109757b952d6SSatish Balay ViewerType vtype; 109857b952d6SSatish Balay 1099d64ed03dSBarry Smith PetscFunctionBegin; 110057b952d6SSatish Balay ierr = ViewerGetType(viewer,&vtype); CHKERRQ(ierr); 110157b952d6SSatish Balay if (vtype == ASCII_FILE_VIEWER || vtype == ASCII_FILES_VIEWER || 110257b952d6SSatish Balay vtype == DRAW_VIEWER || vtype == MATLAB_VIEWER) { 110357b952d6SSatish Balay ierr = MatView_MPIBAIJ_ASCIIorDraworMatlab(mat,viewer); CHKERRQ(ierr); 11043a40ed3dSBarry Smith } else if (vtype == BINARY_FILE_VIEWER) { 11053a40ed3dSBarry Smith ierr = MatView_MPIBAIJ_Binary(mat,viewer);CHKERRQ(ierr); 110657b952d6SSatish Balay } 11073a40ed3dSBarry Smith PetscFunctionReturn(0); 110857b952d6SSatish Balay } 110957b952d6SSatish Balay 11105615d1e5SSatish Balay #undef __FUNC__ 11115615d1e5SSatish Balay #define __FUNC__ "MatDestroy_MPIBAIJ" 1112ec1ea8d8SLois Curfman McInnes int MatDestroy_MPIBAIJ(PetscObject obj) 111379bdfe76SSatish Balay { 111479bdfe76SSatish Balay Mat mat = (Mat) obj; 111579bdfe76SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *) mat->data; 111679bdfe76SSatish Balay int ierr; 111779bdfe76SSatish Balay 1118d64ed03dSBarry Smith PetscFunctionBegin; 11193a40ed3dSBarry Smith #if defined(USE_PETSC_LOG) 112079bdfe76SSatish Balay PLogObjectState(obj,"Rows=%d, Cols=%d",baij->M,baij->N); 112179bdfe76SSatish Balay #endif 112279bdfe76SSatish Balay 112383e2fdc7SBarry Smith ierr = StashDestroy_Private(&baij->stash); CHKERRQ(ierr); 112479bdfe76SSatish Balay PetscFree(baij->rowners); 112579bdfe76SSatish Balay ierr = MatDestroy(baij->A); CHKERRQ(ierr); 112679bdfe76SSatish Balay ierr = MatDestroy(baij->B); CHKERRQ(ierr); 112779bdfe76SSatish Balay if (baij->colmap) PetscFree(baij->colmap); 112879bdfe76SSatish Balay if (baij->garray) PetscFree(baij->garray); 112979bdfe76SSatish Balay if (baij->lvec) VecDestroy(baij->lvec); 113079bdfe76SSatish Balay if (baij->Mvctx) VecScatterDestroy(baij->Mvctx); 113179bdfe76SSatish Balay if (baij->rowvalues) PetscFree(baij->rowvalues); 113230793edcSSatish Balay if (baij->barray) PetscFree(baij->barray); 1133b9e4cc15SSatish Balay if (baij->hd) PetscFree(baij->hd); 113479bdfe76SSatish Balay PetscFree(baij); 113579bdfe76SSatish Balay PLogObjectDestroy(mat); 113679bdfe76SSatish Balay PetscHeaderDestroy(mat); 11373a40ed3dSBarry Smith PetscFunctionReturn(0); 113879bdfe76SSatish Balay } 113979bdfe76SSatish Balay 11405615d1e5SSatish Balay #undef __FUNC__ 11415615d1e5SSatish Balay #define __FUNC__ "MatMult_MPIBAIJ" 1142ec1ea8d8SLois Curfman McInnes int MatMult_MPIBAIJ(Mat A,Vec xx,Vec yy) 1143cee3aa6bSSatish Balay { 1144cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ *) A->data; 114547b4a8eaSLois Curfman McInnes int ierr, nt; 1146cee3aa6bSSatish Balay 1147d64ed03dSBarry Smith PetscFunctionBegin; 1148c16cb8f2SBarry Smith VecGetLocalSize_Fast(xx,nt); 114947b4a8eaSLois Curfman McInnes if (nt != a->n) { 1150a8c6a408SBarry Smith SETERRQ(PETSC_ERR_ARG_SIZ,0,"Incompatible partition of A and xx"); 115147b4a8eaSLois Curfman McInnes } 1152c16cb8f2SBarry Smith VecGetLocalSize_Fast(yy,nt); 115347b4a8eaSLois Curfman McInnes if (nt != a->m) { 1154a8c6a408SBarry Smith SETERRQ(PETSC_ERR_ARG_SIZ,0,"Incompatible parition of A and yy"); 115547b4a8eaSLois Curfman McInnes } 115643a90d84SBarry Smith ierr = VecScatterBegin(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr); 1157cee3aa6bSSatish Balay ierr = (*a->A->ops.mult)(a->A,xx,yy); CHKERRQ(ierr); 115843a90d84SBarry Smith ierr = VecScatterEnd(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr); 1159cee3aa6bSSatish Balay ierr = (*a->B->ops.multadd)(a->B,a->lvec,yy,yy); CHKERRQ(ierr); 116043a90d84SBarry Smith ierr = VecScatterPostRecvs(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr); 11613a40ed3dSBarry Smith PetscFunctionReturn(0); 1162cee3aa6bSSatish Balay } 1163cee3aa6bSSatish Balay 11645615d1e5SSatish Balay #undef __FUNC__ 11655615d1e5SSatish Balay #define __FUNC__ "MatMultAdd_MPIBAIJ" 1166ec1ea8d8SLois Curfman McInnes int MatMultAdd_MPIBAIJ(Mat A,Vec xx,Vec yy,Vec zz) 1167cee3aa6bSSatish Balay { 1168cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ *) A->data; 1169cee3aa6bSSatish Balay int ierr; 1170d64ed03dSBarry Smith 1171d64ed03dSBarry Smith PetscFunctionBegin; 117243a90d84SBarry Smith ierr = VecScatterBegin(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr); 1173cee3aa6bSSatish Balay ierr = (*a->A->ops.multadd)(a->A,xx,yy,zz); CHKERRQ(ierr); 117443a90d84SBarry Smith ierr = VecScatterEnd(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr); 1175cee3aa6bSSatish Balay ierr = (*a->B->ops.multadd)(a->B,a->lvec,zz,zz); CHKERRQ(ierr); 11763a40ed3dSBarry Smith PetscFunctionReturn(0); 1177cee3aa6bSSatish Balay } 1178cee3aa6bSSatish Balay 11795615d1e5SSatish Balay #undef __FUNC__ 11805615d1e5SSatish Balay #define __FUNC__ "MatMultTrans_MPIBAIJ" 1181ec1ea8d8SLois Curfman McInnes int MatMultTrans_MPIBAIJ(Mat A,Vec xx,Vec yy) 1182cee3aa6bSSatish Balay { 1183cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ *) A->data; 1184cee3aa6bSSatish Balay int ierr; 1185cee3aa6bSSatish Balay 1186d64ed03dSBarry Smith PetscFunctionBegin; 1187cee3aa6bSSatish Balay /* do nondiagonal part */ 1188cee3aa6bSSatish Balay ierr = (*a->B->ops.multtrans)(a->B,xx,a->lvec); CHKERRQ(ierr); 1189cee3aa6bSSatish Balay /* send it on its way */ 1190537820f0SBarry Smith ierr = VecScatterBegin(a->lvec,yy,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr); 1191cee3aa6bSSatish Balay /* do local part */ 1192cee3aa6bSSatish Balay ierr = (*a->A->ops.multtrans)(a->A,xx,yy); CHKERRQ(ierr); 1193cee3aa6bSSatish Balay /* receive remote parts: note this assumes the values are not actually */ 1194cee3aa6bSSatish Balay /* inserted in yy until the next line, which is true for my implementation*/ 1195cee3aa6bSSatish Balay /* but is not perhaps always true. */ 1196639f9d9dSBarry Smith ierr = VecScatterEnd(a->lvec,yy,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr); 11973a40ed3dSBarry Smith PetscFunctionReturn(0); 1198cee3aa6bSSatish Balay } 1199cee3aa6bSSatish Balay 12005615d1e5SSatish Balay #undef __FUNC__ 12015615d1e5SSatish Balay #define __FUNC__ "MatMultTransAdd_MPIBAIJ" 1202ec1ea8d8SLois Curfman McInnes int MatMultTransAdd_MPIBAIJ(Mat A,Vec xx,Vec yy,Vec zz) 1203cee3aa6bSSatish Balay { 1204cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ *) A->data; 1205cee3aa6bSSatish Balay int ierr; 1206cee3aa6bSSatish Balay 1207d64ed03dSBarry Smith PetscFunctionBegin; 1208cee3aa6bSSatish Balay /* do nondiagonal part */ 1209cee3aa6bSSatish Balay ierr = (*a->B->ops.multtrans)(a->B,xx,a->lvec); CHKERRQ(ierr); 1210cee3aa6bSSatish Balay /* send it on its way */ 1211537820f0SBarry Smith ierr = VecScatterBegin(a->lvec,zz,ADD_VALUES,SCATTER_REVERSE,a->Mvctx); CHKERRQ(ierr); 1212cee3aa6bSSatish Balay /* do local part */ 1213cee3aa6bSSatish Balay ierr = (*a->A->ops.multtransadd)(a->A,xx,yy,zz); CHKERRQ(ierr); 1214cee3aa6bSSatish Balay /* receive remote parts: note this assumes the values are not actually */ 1215cee3aa6bSSatish Balay /* inserted in yy until the next line, which is true for my implementation*/ 1216cee3aa6bSSatish Balay /* but is not perhaps always true. */ 1217537820f0SBarry Smith ierr = VecScatterEnd(a->lvec,zz,ADD_VALUES,SCATTER_REVERSE,a->Mvctx); CHKERRQ(ierr); 12183a40ed3dSBarry Smith PetscFunctionReturn(0); 1219cee3aa6bSSatish Balay } 1220cee3aa6bSSatish Balay 1221cee3aa6bSSatish Balay /* 1222cee3aa6bSSatish Balay This only works correctly for square matrices where the subblock A->A is the 1223cee3aa6bSSatish Balay diagonal block 1224cee3aa6bSSatish Balay */ 12255615d1e5SSatish Balay #undef __FUNC__ 12265615d1e5SSatish Balay #define __FUNC__ "MatGetDiagonal_MPIBAIJ" 1227ec1ea8d8SLois Curfman McInnes int MatGetDiagonal_MPIBAIJ(Mat A,Vec v) 1228cee3aa6bSSatish Balay { 1229cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ *) A->data; 12303a40ed3dSBarry Smith int ierr; 1231d64ed03dSBarry Smith 1232d64ed03dSBarry Smith PetscFunctionBegin; 1233a8c6a408SBarry Smith if (a->M != a->N) SETERRQ(PETSC_ERR_SUP,0,"Supports only square matrix where A->A is diag block"); 12343a40ed3dSBarry Smith ierr = MatGetDiagonal(a->A,v);CHKERRQ(ierr); 12353a40ed3dSBarry Smith PetscFunctionReturn(0); 1236cee3aa6bSSatish Balay } 1237cee3aa6bSSatish Balay 12385615d1e5SSatish Balay #undef __FUNC__ 12395615d1e5SSatish Balay #define __FUNC__ "MatScale_MPIBAIJ" 1240ec1ea8d8SLois Curfman McInnes int MatScale_MPIBAIJ(Scalar *aa,Mat A) 1241cee3aa6bSSatish Balay { 1242cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ *) A->data; 1243cee3aa6bSSatish Balay int ierr; 1244d64ed03dSBarry Smith 1245d64ed03dSBarry Smith PetscFunctionBegin; 1246cee3aa6bSSatish Balay ierr = MatScale(aa,a->A); CHKERRQ(ierr); 1247cee3aa6bSSatish Balay ierr = MatScale(aa,a->B); CHKERRQ(ierr); 12483a40ed3dSBarry Smith PetscFunctionReturn(0); 1249cee3aa6bSSatish Balay } 1250026e39d0SSatish Balay 12515615d1e5SSatish Balay #undef __FUNC__ 12525615d1e5SSatish Balay #define __FUNC__ "MatGetSize_MPIBAIJ" 1253ec1ea8d8SLois Curfman McInnes int MatGetSize_MPIBAIJ(Mat matin,int *m,int *n) 125457b952d6SSatish Balay { 125557b952d6SSatish Balay Mat_MPIBAIJ *mat = (Mat_MPIBAIJ *) matin->data; 1256d64ed03dSBarry Smith 1257d64ed03dSBarry Smith PetscFunctionBegin; 1258bd7f49f5SSatish Balay if (m) *m = mat->M; 1259bd7f49f5SSatish Balay if (n) *n = mat->N; 12603a40ed3dSBarry Smith PetscFunctionReturn(0); 126157b952d6SSatish Balay } 126257b952d6SSatish Balay 12635615d1e5SSatish Balay #undef __FUNC__ 12645615d1e5SSatish Balay #define __FUNC__ "MatGetLocalSize_MPIBAIJ" 1265ec1ea8d8SLois Curfman McInnes int MatGetLocalSize_MPIBAIJ(Mat matin,int *m,int *n) 126657b952d6SSatish Balay { 126757b952d6SSatish Balay Mat_MPIBAIJ *mat = (Mat_MPIBAIJ *) matin->data; 1268d64ed03dSBarry Smith 1269d64ed03dSBarry Smith PetscFunctionBegin; 127057b952d6SSatish Balay *m = mat->m; *n = mat->N; 12713a40ed3dSBarry Smith PetscFunctionReturn(0); 127257b952d6SSatish Balay } 127357b952d6SSatish Balay 12745615d1e5SSatish Balay #undef __FUNC__ 12755615d1e5SSatish Balay #define __FUNC__ "MatGetOwnershipRange_MPIBAIJ" 1276ec1ea8d8SLois Curfman McInnes int MatGetOwnershipRange_MPIBAIJ(Mat matin,int *m,int *n) 127757b952d6SSatish Balay { 127857b952d6SSatish Balay Mat_MPIBAIJ *mat = (Mat_MPIBAIJ *) matin->data; 1279d64ed03dSBarry Smith 1280d64ed03dSBarry Smith PetscFunctionBegin; 128157b952d6SSatish Balay *m = mat->rstart*mat->bs; *n = mat->rend*mat->bs; 12823a40ed3dSBarry Smith PetscFunctionReturn(0); 128357b952d6SSatish Balay } 128457b952d6SSatish Balay 1285acdf5bf4SSatish Balay extern int MatGetRow_SeqBAIJ(Mat,int,int*,int**,Scalar**); 1286acdf5bf4SSatish Balay extern int MatRestoreRow_SeqBAIJ(Mat,int,int*,int**,Scalar**); 1287acdf5bf4SSatish Balay 12885615d1e5SSatish Balay #undef __FUNC__ 12895615d1e5SSatish Balay #define __FUNC__ "MatGetRow_MPIBAIJ" 1290acdf5bf4SSatish Balay int MatGetRow_MPIBAIJ(Mat matin,int row,int *nz,int **idx,Scalar **v) 1291acdf5bf4SSatish Balay { 1292acdf5bf4SSatish Balay Mat_MPIBAIJ *mat = (Mat_MPIBAIJ *) matin->data; 1293acdf5bf4SSatish Balay Scalar *vworkA, *vworkB, **pvA, **pvB,*v_p; 1294acdf5bf4SSatish Balay int bs = mat->bs, bs2 = mat->bs2, i, ierr, *cworkA, *cworkB, **pcA, **pcB; 1295d9d09a02SSatish Balay int nztot, nzA, nzB, lrow, brstart = mat->rstart*bs, brend = mat->rend*bs; 1296d9d09a02SSatish Balay int *cmap, *idx_p,cstart = mat->cstart; 1297acdf5bf4SSatish Balay 1298d64ed03dSBarry Smith PetscFunctionBegin; 1299a8c6a408SBarry Smith if (mat->getrowactive == PETSC_TRUE) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,0,"Already active"); 1300acdf5bf4SSatish Balay mat->getrowactive = PETSC_TRUE; 1301acdf5bf4SSatish Balay 1302acdf5bf4SSatish Balay if (!mat->rowvalues && (idx || v)) { 1303acdf5bf4SSatish Balay /* 1304acdf5bf4SSatish Balay allocate enough space to hold information from the longest row. 1305acdf5bf4SSatish Balay */ 1306acdf5bf4SSatish Balay Mat_SeqBAIJ *Aa = (Mat_SeqBAIJ *) mat->A->data,*Ba = (Mat_SeqBAIJ *) mat->B->data; 1307bd16c2feSSatish Balay int max = 1,mbs = mat->mbs,tmp; 1308bd16c2feSSatish Balay for ( i=0; i<mbs; i++ ) { 1309acdf5bf4SSatish Balay tmp = Aa->i[i+1] - Aa->i[i] + Ba->i[i+1] - Ba->i[i]; 1310acdf5bf4SSatish Balay if (max < tmp) { max = tmp; } 1311acdf5bf4SSatish Balay } 1312acdf5bf4SSatish Balay mat->rowvalues = (Scalar *) PetscMalloc( max*bs2*(sizeof(int)+sizeof(Scalar))); 1313acdf5bf4SSatish Balay CHKPTRQ(mat->rowvalues); 1314acdf5bf4SSatish Balay mat->rowindices = (int *) (mat->rowvalues + max*bs2); 1315acdf5bf4SSatish Balay } 1316acdf5bf4SSatish Balay 1317a8c6a408SBarry Smith if (row < brstart || row >= brend) SETERRQ(PETSC_ERR_SUP,0,"Only local rows") 1318d9d09a02SSatish Balay lrow = row - brstart; 1319acdf5bf4SSatish Balay 1320acdf5bf4SSatish Balay pvA = &vworkA; pcA = &cworkA; pvB = &vworkB; pcB = &cworkB; 1321acdf5bf4SSatish Balay if (!v) {pvA = 0; pvB = 0;} 1322acdf5bf4SSatish Balay if (!idx) {pcA = 0; if (!v) pcB = 0;} 1323acdf5bf4SSatish Balay ierr = (*mat->A->ops.getrow)(mat->A,lrow,&nzA,pcA,pvA); CHKERRQ(ierr); 1324acdf5bf4SSatish Balay ierr = (*mat->B->ops.getrow)(mat->B,lrow,&nzB,pcB,pvB); CHKERRQ(ierr); 1325acdf5bf4SSatish Balay nztot = nzA + nzB; 1326acdf5bf4SSatish Balay 1327acdf5bf4SSatish Balay cmap = mat->garray; 1328acdf5bf4SSatish Balay if (v || idx) { 1329acdf5bf4SSatish Balay if (nztot) { 1330acdf5bf4SSatish Balay /* Sort by increasing column numbers, assuming A and B already sorted */ 1331acdf5bf4SSatish Balay int imark = -1; 1332acdf5bf4SSatish Balay if (v) { 1333acdf5bf4SSatish Balay *v = v_p = mat->rowvalues; 1334acdf5bf4SSatish Balay for ( i=0; i<nzB; i++ ) { 1335d9d09a02SSatish Balay if (cmap[cworkB[i]/bs] < cstart) v_p[i] = vworkB[i]; 1336acdf5bf4SSatish Balay else break; 1337acdf5bf4SSatish Balay } 1338acdf5bf4SSatish Balay imark = i; 1339acdf5bf4SSatish Balay for ( i=0; i<nzA; i++ ) v_p[imark+i] = vworkA[i]; 1340acdf5bf4SSatish Balay for ( i=imark; i<nzB; i++ ) v_p[nzA+i] = vworkB[i]; 1341acdf5bf4SSatish Balay } 1342acdf5bf4SSatish Balay if (idx) { 1343acdf5bf4SSatish Balay *idx = idx_p = mat->rowindices; 1344acdf5bf4SSatish Balay if (imark > -1) { 1345acdf5bf4SSatish Balay for ( i=0; i<imark; i++ ) { 1346bd16c2feSSatish Balay idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs; 1347acdf5bf4SSatish Balay } 1348acdf5bf4SSatish Balay } else { 1349acdf5bf4SSatish Balay for ( i=0; i<nzB; i++ ) { 1350d9d09a02SSatish Balay if (cmap[cworkB[i]/bs] < cstart) 1351d9d09a02SSatish Balay idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ; 1352acdf5bf4SSatish Balay else break; 1353acdf5bf4SSatish Balay } 1354acdf5bf4SSatish Balay imark = i; 1355acdf5bf4SSatish Balay } 1356d9d09a02SSatish Balay for ( i=0; i<nzA; i++ ) idx_p[imark+i] = cstart*bs + cworkA[i]; 1357d9d09a02SSatish Balay for ( i=imark; i<nzB; i++ ) idx_p[nzA+i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ; 1358acdf5bf4SSatish Balay } 1359d64ed03dSBarry Smith } else { 1360d212a18eSSatish Balay if (idx) *idx = 0; 1361d212a18eSSatish Balay if (v) *v = 0; 1362d212a18eSSatish Balay } 1363acdf5bf4SSatish Balay } 1364acdf5bf4SSatish Balay *nz = nztot; 1365acdf5bf4SSatish Balay ierr = (*mat->A->ops.restorerow)(mat->A,lrow,&nzA,pcA,pvA); CHKERRQ(ierr); 1366acdf5bf4SSatish Balay ierr = (*mat->B->ops.restorerow)(mat->B,lrow,&nzB,pcB,pvB); CHKERRQ(ierr); 13673a40ed3dSBarry Smith PetscFunctionReturn(0); 1368acdf5bf4SSatish Balay } 1369acdf5bf4SSatish Balay 13705615d1e5SSatish Balay #undef __FUNC__ 13715615d1e5SSatish Balay #define __FUNC__ "MatRestoreRow_MPIBAIJ" 1372acdf5bf4SSatish Balay int MatRestoreRow_MPIBAIJ(Mat mat,int row,int *nz,int **idx,Scalar **v) 1373acdf5bf4SSatish Balay { 1374acdf5bf4SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *) mat->data; 1375d64ed03dSBarry Smith 1376d64ed03dSBarry Smith PetscFunctionBegin; 1377acdf5bf4SSatish Balay if (baij->getrowactive == PETSC_FALSE) { 1378a8c6a408SBarry Smith SETERRQ(PETSC_ERR_ARG_WRONGSTATE,0,"MatGetRow not called"); 1379acdf5bf4SSatish Balay } 1380acdf5bf4SSatish Balay baij->getrowactive = PETSC_FALSE; 13813a40ed3dSBarry Smith PetscFunctionReturn(0); 1382acdf5bf4SSatish Balay } 1383acdf5bf4SSatish Balay 13845615d1e5SSatish Balay #undef __FUNC__ 13855615d1e5SSatish Balay #define __FUNC__ "MatGetBlockSize_MPIBAIJ" 1386ec1ea8d8SLois Curfman McInnes int MatGetBlockSize_MPIBAIJ(Mat mat,int *bs) 13875a838052SSatish Balay { 13885a838052SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *) mat->data; 1389d64ed03dSBarry Smith 1390d64ed03dSBarry Smith PetscFunctionBegin; 13915a838052SSatish Balay *bs = baij->bs; 13923a40ed3dSBarry Smith PetscFunctionReturn(0); 13935a838052SSatish Balay } 13945a838052SSatish Balay 13955615d1e5SSatish Balay #undef __FUNC__ 13965615d1e5SSatish Balay #define __FUNC__ "MatZeroEntries_MPIBAIJ" 1397ec1ea8d8SLois Curfman McInnes int MatZeroEntries_MPIBAIJ(Mat A) 139858667388SSatish Balay { 139958667388SSatish Balay Mat_MPIBAIJ *l = (Mat_MPIBAIJ *) A->data; 140058667388SSatish Balay int ierr; 1401d64ed03dSBarry Smith 1402d64ed03dSBarry Smith PetscFunctionBegin; 140358667388SSatish Balay ierr = MatZeroEntries(l->A); CHKERRQ(ierr); 140458667388SSatish Balay ierr = MatZeroEntries(l->B); CHKERRQ(ierr); 14053a40ed3dSBarry Smith PetscFunctionReturn(0); 140658667388SSatish Balay } 14070ac07820SSatish Balay 14085615d1e5SSatish Balay #undef __FUNC__ 14095615d1e5SSatish Balay #define __FUNC__ "MatGetInfo_MPIBAIJ" 1410ec1ea8d8SLois Curfman McInnes int MatGetInfo_MPIBAIJ(Mat matin,MatInfoType flag,MatInfo *info) 14110ac07820SSatish Balay { 14124e220ebcSLois Curfman McInnes Mat_MPIBAIJ *a = (Mat_MPIBAIJ *) matin->data; 14134e220ebcSLois Curfman McInnes Mat A = a->A, B = a->B; 14147d57db60SLois Curfman McInnes int ierr; 14157d57db60SLois Curfman McInnes double isend[5], irecv[5]; 14160ac07820SSatish Balay 1417d64ed03dSBarry Smith PetscFunctionBegin; 14184e220ebcSLois Curfman McInnes info->block_size = (double)a->bs; 14194e220ebcSLois Curfman McInnes ierr = MatGetInfo(A,MAT_LOCAL,info); CHKERRQ(ierr); 14204e220ebcSLois Curfman McInnes isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->memory; 14214e220ebcSLois Curfman McInnes ierr = MatGetInfo(B,MAT_LOCAL,info); CHKERRQ(ierr); 14224e220ebcSLois Curfman McInnes isend[0] += info->nz_used; isend[1] += info->nz_allocated; isend[2] += info->memory; 14230ac07820SSatish Balay if (flag == MAT_LOCAL) { 14244e220ebcSLois Curfman McInnes info->nz_used = isend[0]; 14254e220ebcSLois Curfman McInnes info->nz_allocated = isend[1]; 14264e220ebcSLois Curfman McInnes info->nz_unneeded = isend[2]; 14274e220ebcSLois Curfman McInnes info->memory = isend[3]; 14284e220ebcSLois Curfman McInnes info->mallocs = isend[4]; 14290ac07820SSatish Balay } else if (flag == MAT_GLOBAL_MAX) { 1430ca161407SBarry Smith ierr = MPI_Allreduce(isend,irecv,5,MPI_INT,MPI_MAX,matin->comm);CHKERRQ(ierr); 14314e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 14324e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 14334e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 14344e220ebcSLois Curfman McInnes info->memory = irecv[3]; 14354e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 14360ac07820SSatish Balay } else if (flag == MAT_GLOBAL_SUM) { 1437ca161407SBarry Smith ierr = MPI_Allreduce(isend,irecv,5,MPI_INT,MPI_SUM,matin->comm);CHKERRQ(ierr); 14384e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 14394e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 14404e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 14414e220ebcSLois Curfman McInnes info->memory = irecv[3]; 14424e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 14430ac07820SSatish Balay } 14445a5d4f66SBarry Smith info->rows_global = (double)a->M; 14455a5d4f66SBarry Smith info->columns_global = (double)a->N; 14465a5d4f66SBarry Smith info->rows_local = (double)a->m; 14475a5d4f66SBarry Smith info->columns_local = (double)a->N; 14484e220ebcSLois Curfman McInnes info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */ 14494e220ebcSLois Curfman McInnes info->fill_ratio_needed = 0; 14504e220ebcSLois Curfman McInnes info->factor_mallocs = 0; 14513a40ed3dSBarry Smith PetscFunctionReturn(0); 14520ac07820SSatish Balay } 14530ac07820SSatish Balay 14545615d1e5SSatish Balay #undef __FUNC__ 14555615d1e5SSatish Balay #define __FUNC__ "MatSetOption_MPIBAIJ" 1456ec1ea8d8SLois Curfman McInnes int MatSetOption_MPIBAIJ(Mat A,MatOption op) 145758667388SSatish Balay { 145858667388SSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ *) A->data; 145958667388SSatish Balay 1460d64ed03dSBarry Smith PetscFunctionBegin; 146158667388SSatish Balay if (op == MAT_NO_NEW_NONZERO_LOCATIONS || 146258667388SSatish Balay op == MAT_YES_NEW_NONZERO_LOCATIONS || 14636da5968aSLois Curfman McInnes op == MAT_COLUMNS_UNSORTED || 1464c2653b3dSLois Curfman McInnes op == MAT_COLUMNS_SORTED || 146596854ed6SLois Curfman McInnes op == MAT_NEW_NONZERO_ALLOCATION_ERROR || 1466c2653b3dSLois Curfman McInnes op == MAT_NEW_NONZERO_LOCATION_ERROR) { 1467b1fbbac0SLois Curfman McInnes MatSetOption(a->A,op); 1468b1fbbac0SLois Curfman McInnes MatSetOption(a->B,op); 1469b1fbbac0SLois Curfman McInnes } else if (op == MAT_ROW_ORIENTED) { 1470aeafbbfcSLois Curfman McInnes a->roworiented = 1; 147158667388SSatish Balay MatSetOption(a->A,op); 147258667388SSatish Balay MatSetOption(a->B,op); 1473b1fbbac0SLois Curfman McInnes } else if (op == MAT_ROWS_SORTED || 14746da5968aSLois Curfman McInnes op == MAT_ROWS_UNSORTED || 147558667388SSatish Balay op == MAT_SYMMETRIC || 147658667388SSatish Balay op == MAT_STRUCTURALLY_SYMMETRIC || 147758667388SSatish Balay op == MAT_YES_NEW_DIAGONALS) 147858667388SSatish Balay PLogInfo(A,"Info:MatSetOption_MPIBAIJ:Option ignored\n"); 147958667388SSatish Balay else if (op == MAT_COLUMN_ORIENTED) { 148058667388SSatish Balay a->roworiented = 0; 148158667388SSatish Balay MatSetOption(a->A,op); 148258667388SSatish Balay MatSetOption(a->B,op); 14832b362799SSatish Balay } else if (op == MAT_IGNORE_OFF_PROC_ENTRIES) { 148490f02eecSBarry Smith a->donotstash = 1; 1485d64ed03dSBarry Smith } else if (op == MAT_NO_NEW_DIAGONALS) { 1486d64ed03dSBarry Smith SETERRQ(PETSC_ERR_SUP,0,"MAT_NO_NEW_DIAGONALS"); 1487d64ed03dSBarry Smith } else { 1488d64ed03dSBarry Smith SETERRQ(PETSC_ERR_SUP,0,"unknown option"); 1489d64ed03dSBarry Smith } 14903a40ed3dSBarry Smith PetscFunctionReturn(0); 149158667388SSatish Balay } 149258667388SSatish Balay 14935615d1e5SSatish Balay #undef __FUNC__ 14945615d1e5SSatish Balay #define __FUNC__ "MatTranspose_MPIBAIJ(" 1495ec1ea8d8SLois Curfman McInnes int MatTranspose_MPIBAIJ(Mat A,Mat *matout) 14960ac07820SSatish Balay { 14970ac07820SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *) A->data; 14980ac07820SSatish Balay Mat_SeqBAIJ *Aloc; 14990ac07820SSatish Balay Mat B; 15000ac07820SSatish Balay int ierr,M=baij->M,N=baij->N,*ai,*aj,row,i,*rvals,j,k,col; 15010ac07820SSatish Balay int bs=baij->bs,mbs=baij->mbs; 15020ac07820SSatish Balay Scalar *a; 15030ac07820SSatish Balay 1504d64ed03dSBarry Smith PetscFunctionBegin; 1505a8c6a408SBarry Smith if (matout == PETSC_NULL && M != N) SETERRQ(PETSC_ERR_ARG_SIZ,0,"Square matrix only for in-place"); 15060ac07820SSatish Balay ierr = MatCreateMPIBAIJ(A->comm,baij->bs,PETSC_DECIDE,PETSC_DECIDE,N,M,0,PETSC_NULL,0,PETSC_NULL,&B); 15070ac07820SSatish Balay CHKERRQ(ierr); 15080ac07820SSatish Balay 15090ac07820SSatish Balay /* copy over the A part */ 15100ac07820SSatish Balay Aloc = (Mat_SeqBAIJ*) baij->A->data; 15110ac07820SSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 15120ac07820SSatish Balay row = baij->rstart; 15130ac07820SSatish Balay rvals = (int *) PetscMalloc(bs*sizeof(int)); CHKPTRQ(rvals); 15140ac07820SSatish Balay 15150ac07820SSatish Balay for ( i=0; i<mbs; i++ ) { 15160ac07820SSatish Balay rvals[0] = bs*(baij->rstart + i); 15170ac07820SSatish Balay for ( j=1; j<bs; j++ ) { rvals[j] = rvals[j-1] + 1; } 15180ac07820SSatish Balay for ( j=ai[i]; j<ai[i+1]; j++ ) { 15190ac07820SSatish Balay col = (baij->cstart+aj[j])*bs; 15200ac07820SSatish Balay for (k=0; k<bs; k++ ) { 15210ac07820SSatish Balay ierr = MatSetValues(B,1,&col,bs,rvals,a,INSERT_VALUES);CHKERRQ(ierr); 15220ac07820SSatish Balay col++; a += bs; 15230ac07820SSatish Balay } 15240ac07820SSatish Balay } 15250ac07820SSatish Balay } 15260ac07820SSatish Balay /* copy over the B part */ 15270ac07820SSatish Balay Aloc = (Mat_SeqBAIJ*) baij->B->data; 15280ac07820SSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 15290ac07820SSatish Balay row = baij->rstart*bs; 15300ac07820SSatish Balay for ( i=0; i<mbs; i++ ) { 15310ac07820SSatish Balay rvals[0] = bs*(baij->rstart + i); 15320ac07820SSatish Balay for ( j=1; j<bs; j++ ) { rvals[j] = rvals[j-1] + 1; } 15330ac07820SSatish Balay for ( j=ai[i]; j<ai[i+1]; j++ ) { 15340ac07820SSatish Balay col = baij->garray[aj[j]]*bs; 15350ac07820SSatish Balay for (k=0; k<bs; k++ ) { 15360ac07820SSatish Balay ierr = MatSetValues(B,1,&col,bs,rvals,a,INSERT_VALUES);CHKERRQ(ierr); 15370ac07820SSatish Balay col++; a += bs; 15380ac07820SSatish Balay } 15390ac07820SSatish Balay } 15400ac07820SSatish Balay } 15410ac07820SSatish Balay PetscFree(rvals); 15420ac07820SSatish Balay ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY); CHKERRQ(ierr); 15430ac07820SSatish Balay ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY); CHKERRQ(ierr); 15440ac07820SSatish Balay 15450ac07820SSatish Balay if (matout != PETSC_NULL) { 15460ac07820SSatish Balay *matout = B; 15470ac07820SSatish Balay } else { 15480ac07820SSatish Balay /* This isn't really an in-place transpose .... but free data structures from baij */ 15490ac07820SSatish Balay PetscFree(baij->rowners); 15500ac07820SSatish Balay ierr = MatDestroy(baij->A); CHKERRQ(ierr); 15510ac07820SSatish Balay ierr = MatDestroy(baij->B); CHKERRQ(ierr); 15520ac07820SSatish Balay if (baij->colmap) PetscFree(baij->colmap); 15530ac07820SSatish Balay if (baij->garray) PetscFree(baij->garray); 15540ac07820SSatish Balay if (baij->lvec) VecDestroy(baij->lvec); 15550ac07820SSatish Balay if (baij->Mvctx) VecScatterDestroy(baij->Mvctx); 15560ac07820SSatish Balay PetscFree(baij); 1557f09e8eb9SSatish Balay PetscMemcpy(A,B,sizeof(struct _p_Mat)); 15580ac07820SSatish Balay PetscHeaderDestroy(B); 15590ac07820SSatish Balay } 15603a40ed3dSBarry Smith PetscFunctionReturn(0); 15610ac07820SSatish Balay } 15620e95ebc0SSatish Balay 15635615d1e5SSatish Balay #undef __FUNC__ 15645615d1e5SSatish Balay #define __FUNC__ "MatDiagonalScale_MPIBAIJ" 15650e95ebc0SSatish Balay int MatDiagonalScale_MPIBAIJ(Mat A,Vec ll,Vec rr) 15660e95ebc0SSatish Balay { 15670e95ebc0SSatish Balay Mat a = ((Mat_MPIBAIJ *) A->data)->A; 15680e95ebc0SSatish Balay Mat b = ((Mat_MPIBAIJ *) A->data)->B; 15690e95ebc0SSatish Balay int ierr,s1,s2,s3; 15700e95ebc0SSatish Balay 1571d64ed03dSBarry Smith PetscFunctionBegin; 15720e95ebc0SSatish Balay if (ll) { 15730e95ebc0SSatish Balay ierr = VecGetLocalSize(ll,&s1); CHKERRQ(ierr); 15740e95ebc0SSatish Balay ierr = MatGetLocalSize(A,&s2,&s3); CHKERRQ(ierr); 1575a8c6a408SBarry Smith if (s1!=s2) SETERRQ(PETSC_ERR_ARG_SIZ,0,"non-conforming local sizes"); 15760e95ebc0SSatish Balay ierr = MatDiagonalScale(a,ll,0); CHKERRQ(ierr); 15770e95ebc0SSatish Balay ierr = MatDiagonalScale(b,ll,0); CHKERRQ(ierr); 15780e95ebc0SSatish Balay } 1579a8c6a408SBarry Smith if (rr) SETERRQ(PETSC_ERR_SUP,0,"not supported for right vector"); 15803a40ed3dSBarry Smith PetscFunctionReturn(0); 15810e95ebc0SSatish Balay } 15820e95ebc0SSatish Balay 15835615d1e5SSatish Balay #undef __FUNC__ 15845615d1e5SSatish Balay #define __FUNC__ "MatZeroRows_MPIBAIJ" 1585ec1ea8d8SLois Curfman McInnes int MatZeroRows_MPIBAIJ(Mat A,IS is,Scalar *diag) 15860ac07820SSatish Balay { 15870ac07820SSatish Balay Mat_MPIBAIJ *l = (Mat_MPIBAIJ *) A->data; 15880ac07820SSatish Balay int i,ierr,N, *rows,*owners = l->rowners,size = l->size; 1589a07cd24cSSatish Balay int *procs,*nprocs,j,found,idx,nsends,*work,row; 15900ac07820SSatish Balay int nmax,*svalues,*starts,*owner,nrecvs,rank = l->rank; 15910ac07820SSatish Balay int *rvalues,tag = A->tag,count,base,slen,n,*source; 1592a07cd24cSSatish Balay int *lens,imdex,*lrows,*values,bs=l->bs,rstart_bs=l->rstart_bs; 15930ac07820SSatish Balay MPI_Comm comm = A->comm; 15940ac07820SSatish Balay MPI_Request *send_waits,*recv_waits; 15950ac07820SSatish Balay MPI_Status recv_status,*send_status; 15960ac07820SSatish Balay IS istmp; 15970ac07820SSatish Balay 1598d64ed03dSBarry Smith PetscFunctionBegin; 15990ac07820SSatish Balay ierr = ISGetSize(is,&N); CHKERRQ(ierr); 16000ac07820SSatish Balay ierr = ISGetIndices(is,&rows); CHKERRQ(ierr); 16010ac07820SSatish Balay 16020ac07820SSatish Balay /* first count number of contributors to each processor */ 16030ac07820SSatish Balay nprocs = (int *) PetscMalloc( 2*size*sizeof(int) ); CHKPTRQ(nprocs); 16040ac07820SSatish Balay PetscMemzero(nprocs,2*size*sizeof(int)); procs = nprocs + size; 16050ac07820SSatish Balay owner = (int *) PetscMalloc((N+1)*sizeof(int)); CHKPTRQ(owner); /* see note*/ 16060ac07820SSatish Balay for ( i=0; i<N; i++ ) { 16070ac07820SSatish Balay idx = rows[i]; 16080ac07820SSatish Balay found = 0; 16090ac07820SSatish Balay for ( j=0; j<size; j++ ) { 16100ac07820SSatish Balay if (idx >= owners[j]*bs && idx < owners[j+1]*bs) { 16110ac07820SSatish Balay nprocs[j]++; procs[j] = 1; owner[i] = j; found = 1; break; 16120ac07820SSatish Balay } 16130ac07820SSatish Balay } 1614a8c6a408SBarry Smith if (!found) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Index out of range"); 16150ac07820SSatish Balay } 16160ac07820SSatish Balay nsends = 0; for ( i=0; i<size; i++ ) { nsends += procs[i];} 16170ac07820SSatish Balay 16180ac07820SSatish Balay /* inform other processors of number of messages and max length*/ 16190ac07820SSatish Balay work = (int *) PetscMalloc( size*sizeof(int) ); CHKPTRQ(work); 1620ca161407SBarry Smith ierr = MPI_Allreduce( procs, work,size,MPI_INT,MPI_SUM,comm);CHKERRQ(ierr); 16210ac07820SSatish Balay nrecvs = work[rank]; 1622ca161407SBarry Smith ierr = MPI_Allreduce( nprocs, work,size,MPI_INT,MPI_MAX,comm);CHKERRQ(ierr); 16230ac07820SSatish Balay nmax = work[rank]; 16240ac07820SSatish Balay PetscFree(work); 16250ac07820SSatish Balay 16260ac07820SSatish Balay /* post receives: */ 1627d64ed03dSBarry Smith rvalues = (int *) PetscMalloc((nrecvs+1)*(nmax+1)*sizeof(int)); CHKPTRQ(rvalues); 1628d64ed03dSBarry Smith recv_waits = (MPI_Request *) PetscMalloc((nrecvs+1)*sizeof(MPI_Request));CHKPTRQ(recv_waits); 16290ac07820SSatish Balay for ( i=0; i<nrecvs; i++ ) { 1630ca161407SBarry Smith ierr = MPI_Irecv(rvalues+nmax*i,nmax,MPI_INT,MPI_ANY_SOURCE,tag,comm,recv_waits+i);CHKERRQ(ierr); 16310ac07820SSatish Balay } 16320ac07820SSatish Balay 16330ac07820SSatish Balay /* do sends: 16340ac07820SSatish Balay 1) starts[i] gives the starting index in svalues for stuff going to 16350ac07820SSatish Balay the ith processor 16360ac07820SSatish Balay */ 16370ac07820SSatish Balay svalues = (int *) PetscMalloc( (N+1)*sizeof(int) ); CHKPTRQ(svalues); 1638ca161407SBarry Smith send_waits = (MPI_Request *) PetscMalloc( (nsends+1)*sizeof(MPI_Request));CHKPTRQ(send_waits); 16390ac07820SSatish Balay starts = (int *) PetscMalloc( (size+1)*sizeof(int) ); CHKPTRQ(starts); 16400ac07820SSatish Balay starts[0] = 0; 16410ac07820SSatish Balay for ( i=1; i<size; i++ ) { starts[i] = starts[i-1] + nprocs[i-1];} 16420ac07820SSatish Balay for ( i=0; i<N; i++ ) { 16430ac07820SSatish Balay svalues[starts[owner[i]]++] = rows[i]; 16440ac07820SSatish Balay } 16450ac07820SSatish Balay ISRestoreIndices(is,&rows); 16460ac07820SSatish Balay 16470ac07820SSatish Balay starts[0] = 0; 16480ac07820SSatish Balay for ( i=1; i<size+1; i++ ) { starts[i] = starts[i-1] + nprocs[i-1];} 16490ac07820SSatish Balay count = 0; 16500ac07820SSatish Balay for ( i=0; i<size; i++ ) { 16510ac07820SSatish Balay if (procs[i]) { 1652ca161407SBarry Smith ierr = MPI_Isend(svalues+starts[i],nprocs[i],MPI_INT,i,tag,comm,send_waits+count++);CHKERRQ(ierr); 16530ac07820SSatish Balay } 16540ac07820SSatish Balay } 16550ac07820SSatish Balay PetscFree(starts); 16560ac07820SSatish Balay 16570ac07820SSatish Balay base = owners[rank]*bs; 16580ac07820SSatish Balay 16590ac07820SSatish Balay /* wait on receives */ 16600ac07820SSatish Balay lens = (int *) PetscMalloc( 2*(nrecvs+1)*sizeof(int) ); CHKPTRQ(lens); 16610ac07820SSatish Balay source = lens + nrecvs; 16620ac07820SSatish Balay count = nrecvs; slen = 0; 16630ac07820SSatish Balay while (count) { 1664ca161407SBarry Smith ierr = MPI_Waitany(nrecvs,recv_waits,&imdex,&recv_status);CHKERRQ(ierr); 16650ac07820SSatish Balay /* unpack receives into our local space */ 1666ca161407SBarry Smith ierr = MPI_Get_count(&recv_status,MPI_INT,&n);CHKERRQ(ierr); 16670ac07820SSatish Balay source[imdex] = recv_status.MPI_SOURCE; 16680ac07820SSatish Balay lens[imdex] = n; 16690ac07820SSatish Balay slen += n; 16700ac07820SSatish Balay count--; 16710ac07820SSatish Balay } 16720ac07820SSatish Balay PetscFree(recv_waits); 16730ac07820SSatish Balay 16740ac07820SSatish Balay /* move the data into the send scatter */ 16750ac07820SSatish Balay lrows = (int *) PetscMalloc( (slen+1)*sizeof(int) ); CHKPTRQ(lrows); 16760ac07820SSatish Balay count = 0; 16770ac07820SSatish Balay for ( i=0; i<nrecvs; i++ ) { 16780ac07820SSatish Balay values = rvalues + i*nmax; 16790ac07820SSatish Balay for ( j=0; j<lens[i]; j++ ) { 16800ac07820SSatish Balay lrows[count++] = values[j] - base; 16810ac07820SSatish Balay } 16820ac07820SSatish Balay } 16830ac07820SSatish Balay PetscFree(rvalues); PetscFree(lens); 16840ac07820SSatish Balay PetscFree(owner); PetscFree(nprocs); 16850ac07820SSatish Balay 16860ac07820SSatish Balay /* actually zap the local rows */ 1687029af93fSBarry Smith ierr = ISCreateGeneral(PETSC_COMM_SELF,slen,lrows,&istmp);CHKERRQ(ierr); 16880ac07820SSatish Balay PLogObjectParent(A,istmp); 1689a07cd24cSSatish Balay 1690a07cd24cSSatish Balay ierr = MatZeroRows(l->A,istmp,0); CHKERRQ(ierr); 16910ac07820SSatish Balay ierr = MatZeroRows(l->B,istmp,0); CHKERRQ(ierr); 16920ac07820SSatish Balay ierr = ISDestroy(istmp); CHKERRQ(ierr); 16930ac07820SSatish Balay 1694a07cd24cSSatish Balay if (diag) { 1695a07cd24cSSatish Balay for ( i = 0; i < slen; i++ ) { 1696a07cd24cSSatish Balay row = lrows[i] + rstart_bs; 1697a07cd24cSSatish Balay ierr = MatSetValues(A,1,&row,1,&row,diag,INSERT_VALUES); CHKERRQ(ierr); 1698a07cd24cSSatish Balay } 1699a07cd24cSSatish Balay ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY); CHKERRQ(ierr); 1700a07cd24cSSatish Balay ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY); CHKERRQ(ierr); 1701a07cd24cSSatish Balay } 1702a07cd24cSSatish Balay PetscFree(lrows); 1703a07cd24cSSatish Balay 17040ac07820SSatish Balay /* wait on sends */ 17050ac07820SSatish Balay if (nsends) { 1706d64ed03dSBarry Smith send_status = (MPI_Status *) PetscMalloc(nsends*sizeof(MPI_Status));CHKPTRQ(send_status); 1707ca161407SBarry Smith ierr = MPI_Waitall(nsends,send_waits,send_status);CHKERRQ(ierr); 17080ac07820SSatish Balay PetscFree(send_status); 17090ac07820SSatish Balay } 17100ac07820SSatish Balay PetscFree(send_waits); PetscFree(svalues); 17110ac07820SSatish Balay 17123a40ed3dSBarry Smith PetscFunctionReturn(0); 17130ac07820SSatish Balay } 1714ba4ca20aSSatish Balay extern int MatPrintHelp_SeqBAIJ(Mat); 17155615d1e5SSatish Balay #undef __FUNC__ 17165615d1e5SSatish Balay #define __FUNC__ "MatPrintHelp_MPIBAIJ" 1717ec1ea8d8SLois Curfman McInnes int MatPrintHelp_MPIBAIJ(Mat A) 1718ba4ca20aSSatish Balay { 1719ba4ca20aSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*) A->data; 17203a40ed3dSBarry Smith int ierr; 1721ba4ca20aSSatish Balay 1722d64ed03dSBarry Smith PetscFunctionBegin; 17233a40ed3dSBarry Smith if (!a->rank) { 17243a40ed3dSBarry Smith ierr = MatPrintHelp_SeqBAIJ(a->A);CHKERRQ(ierr); 17253a40ed3dSBarry Smith } 17263a40ed3dSBarry Smith PetscFunctionReturn(0); 1727ba4ca20aSSatish Balay } 17280ac07820SSatish Balay 17295615d1e5SSatish Balay #undef __FUNC__ 17305615d1e5SSatish Balay #define __FUNC__ "MatSetUnfactored_MPIBAIJ" 1731ec1ea8d8SLois Curfman McInnes int MatSetUnfactored_MPIBAIJ(Mat A) 1732bb5a7306SBarry Smith { 1733bb5a7306SBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ*) A->data; 1734bb5a7306SBarry Smith int ierr; 1735d64ed03dSBarry Smith 1736d64ed03dSBarry Smith PetscFunctionBegin; 1737bb5a7306SBarry Smith ierr = MatSetUnfactored(a->A); CHKERRQ(ierr); 17383a40ed3dSBarry Smith PetscFunctionReturn(0); 1739bb5a7306SBarry Smith } 1740bb5a7306SBarry Smith 17410ac07820SSatish Balay static int MatConvertSameType_MPIBAIJ(Mat,Mat *,int); 17420ac07820SSatish Balay 174379bdfe76SSatish Balay /* -------------------------------------------------------------------*/ 174479bdfe76SSatish Balay static struct _MatOps MatOps = { 1745bd16c2feSSatish Balay MatSetValues_MPIBAIJ,MatGetRow_MPIBAIJ,MatRestoreRow_MPIBAIJ,MatMult_MPIBAIJ, 17464c50302cSBarry Smith MatMultAdd_MPIBAIJ,MatMultTrans_MPIBAIJ,MatMultTransAdd_MPIBAIJ,0, 17474c50302cSBarry Smith 0,0,0,0, 17480ac07820SSatish Balay 0,0,MatTranspose_MPIBAIJ,MatGetInfo_MPIBAIJ, 17490e95ebc0SSatish Balay 0,MatGetDiagonal_MPIBAIJ,MatDiagonalScale_MPIBAIJ,MatNorm_MPIBAIJ, 175058667388SSatish Balay MatAssemblyBegin_MPIBAIJ,MatAssemblyEnd_MPIBAIJ,0,MatSetOption_MPIBAIJ, 17514c50302cSBarry Smith MatZeroEntries_MPIBAIJ,MatZeroRows_MPIBAIJ,0, 17524c50302cSBarry Smith 0,0,0,MatGetSize_MPIBAIJ, 17534c50302cSBarry Smith MatGetLocalSize_MPIBAIJ,MatGetOwnershipRange_MPIBAIJ,0,0, 175494a9d846SBarry Smith 0,0,MatConvertSameType_MPIBAIJ,0,0, 1755d212a18eSSatish Balay 0,0,0,MatGetSubMatrices_MPIBAIJ, 1756ba4ca20aSSatish Balay MatIncreaseOverlap_MPIBAIJ,MatGetValues_MPIBAIJ,0,MatPrintHelp_MPIBAIJ, 1757bb5a7306SBarry Smith MatScale_MPIBAIJ,0,0,0,MatGetBlockSize_MPIBAIJ, 1758ab26458aSBarry Smith 0,0,0,0,0,0,MatSetUnfactored_MPIBAIJ,0,MatSetValuesBlocked_MPIBAIJ}; 175979bdfe76SSatish Balay 176079bdfe76SSatish Balay 17615615d1e5SSatish Balay #undef __FUNC__ 17625615d1e5SSatish Balay #define __FUNC__ "MatCreateMPIBAIJ" 176379bdfe76SSatish Balay /*@C 176479bdfe76SSatish Balay MatCreateMPIBAIJ - Creates a sparse parallel matrix in block AIJ format 176579bdfe76SSatish Balay (block compressed row). For good matrix assembly performance 176679bdfe76SSatish Balay the user should preallocate the matrix storage by setting the parameters 176779bdfe76SSatish Balay d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 176879bdfe76SSatish Balay performance can be increased by more than a factor of 50. 176979bdfe76SSatish Balay 177079bdfe76SSatish Balay Input Parameters: 177179bdfe76SSatish Balay . comm - MPI communicator 177279bdfe76SSatish Balay . bs - size of blockk 177379bdfe76SSatish Balay . m - number of local rows (or PETSC_DECIDE to have calculated if M is given) 177492e8d321SLois Curfman McInnes This value should be the same as the local size used in creating the 177592e8d321SLois Curfman McInnes y vector for the matrix-vector product y = Ax. 177692e8d321SLois Curfman McInnes . n - number of local columns (or PETSC_DECIDE to have calculated if N is given) 177792e8d321SLois Curfman McInnes This value should be the same as the local size used in creating the 177892e8d321SLois Curfman McInnes x vector for the matrix-vector product y = Ax. 177979bdfe76SSatish Balay . M - number of global rows (or PETSC_DECIDE to have calculated if m is given) 178092e8d321SLois Curfman McInnes . N - number of global columns (or PETSC_DECIDE to have calculated if n is given) 178179bdfe76SSatish Balay . d_nz - number of block nonzeros per block row in diagonal portion of local 178279bdfe76SSatish Balay submatrix (same for all local rows) 178392e8d321SLois Curfman McInnes . d_nzz - array containing the number of block nonzeros in the various block rows 178492e8d321SLois Curfman McInnes of the in diagonal portion of the local (possibly different for each block 178592e8d321SLois Curfman McInnes row) or PETSC_NULL. You must leave room for the diagonal entry even if 178692e8d321SLois Curfman McInnes it is zero. 178792e8d321SLois Curfman McInnes . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 178879bdfe76SSatish Balay submatrix (same for all local rows). 178992e8d321SLois Curfman McInnes . o_nzz - array containing the number of nonzeros in the various block rows of the 179092e8d321SLois Curfman McInnes off-diagonal portion of the local submatrix (possibly different for 179192e8d321SLois Curfman McInnes each block row) or PETSC_NULL. 179279bdfe76SSatish Balay 179379bdfe76SSatish Balay Output Parameter: 179479bdfe76SSatish Balay . A - the matrix 179579bdfe76SSatish Balay 179679bdfe76SSatish Balay Notes: 179779bdfe76SSatish Balay The user MUST specify either the local or global matrix dimensions 179879bdfe76SSatish Balay (possibly both). 179979bdfe76SSatish Balay 180079bdfe76SSatish Balay Storage Information: 180179bdfe76SSatish Balay For a square global matrix we define each processor's diagonal portion 180279bdfe76SSatish Balay to be its local rows and the corresponding columns (a square submatrix); 180379bdfe76SSatish Balay each processor's off-diagonal portion encompasses the remainder of the 180479bdfe76SSatish Balay local matrix (a rectangular submatrix). 180579bdfe76SSatish Balay 180679bdfe76SSatish Balay The user can specify preallocated storage for the diagonal part of 180779bdfe76SSatish Balay the local submatrix with either d_nz or d_nnz (not both). Set 180879bdfe76SSatish Balay d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic 180979bdfe76SSatish Balay memory allocation. Likewise, specify preallocated storage for the 181079bdfe76SSatish Balay off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 181179bdfe76SSatish Balay 181279bdfe76SSatish Balay Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 181379bdfe76SSatish Balay the figure below we depict these three local rows and all columns (0-11). 181479bdfe76SSatish Balay 181579bdfe76SSatish Balay $ 0 1 2 3 4 5 6 7 8 9 10 11 181679bdfe76SSatish Balay $ ------------------- 181779bdfe76SSatish Balay $ row 3 | o o o d d d o o o o o o 181879bdfe76SSatish Balay $ row 4 | o o o d d d o o o o o o 181979bdfe76SSatish Balay $ row 5 | o o o d d d o o o o o o 182079bdfe76SSatish Balay $ ------------------- 182179bdfe76SSatish Balay $ 182279bdfe76SSatish Balay 182379bdfe76SSatish Balay Thus, any entries in the d locations are stored in the d (diagonal) 182479bdfe76SSatish Balay submatrix, and any entries in the o locations are stored in the 182579bdfe76SSatish Balay o (off-diagonal) submatrix. Note that the d and the o submatrices are 182657b952d6SSatish Balay stored simply in the MATSEQBAIJ format for compressed row storage. 182779bdfe76SSatish Balay 1828d64ed03dSBarry Smith Now d_nz should indicate the number of block nonzeros per row in the d matrix, 1829d64ed03dSBarry Smith and o_nz should indicate the number of block nonzeros per row in the o matrix. 183079bdfe76SSatish Balay In general, for PDE problems in which most nonzeros are near the diagonal, 183192e8d321SLois Curfman McInnes one expects d_nz >> o_nz. For large problems you MUST preallocate memory 183292e8d321SLois Curfman McInnes or you will get TERRIBLE performance; see the users' manual chapter on 18336da5968aSLois Curfman McInnes matrices. 183479bdfe76SSatish Balay 183592e8d321SLois Curfman McInnes .keywords: matrix, block, aij, compressed row, sparse, parallel 183679bdfe76SSatish Balay 183779bdfe76SSatish Balay .seealso: MatCreate(), MatCreateSeqBAIJ(), MatSetValues() 183879bdfe76SSatish Balay @*/ 183979bdfe76SSatish Balay int MatCreateMPIBAIJ(MPI_Comm comm,int bs,int m,int n,int M,int N, 184079bdfe76SSatish Balay int d_nz,int *d_nnz,int o_nz,int *o_nnz,Mat *A) 184179bdfe76SSatish Balay { 184279bdfe76SSatish Balay Mat B; 184379bdfe76SSatish Balay Mat_MPIBAIJ *b; 18444c50302cSBarry Smith int ierr, i,sum[2],work[2],mbs,nbs,Mbs=PETSC_DECIDE,Nbs=PETSC_DECIDE,size; 184579bdfe76SSatish Balay 1846d64ed03dSBarry Smith PetscFunctionBegin; 1847a8c6a408SBarry Smith if (bs < 1) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Invalid block size specified, must be positive"); 18483914022bSBarry Smith 18493914022bSBarry Smith MPI_Comm_size(comm,&size); 18503914022bSBarry Smith if (size == 1) { 18513914022bSBarry Smith if (M == PETSC_DECIDE) M = m; 18523914022bSBarry Smith if (N == PETSC_DECIDE) N = n; 18533914022bSBarry Smith ierr = MatCreateSeqBAIJ(comm,bs,M,N,d_nz,d_nnz,A); CHKERRQ(ierr); 18543a40ed3dSBarry Smith PetscFunctionReturn(0); 18553914022bSBarry Smith } 18563914022bSBarry Smith 185779bdfe76SSatish Balay *A = 0; 1858d4bb536fSBarry Smith PetscHeaderCreate(B,_p_Mat,MAT_COOKIE,MATMPIBAIJ,comm,MatDestroy,MatView); 185979bdfe76SSatish Balay PLogObjectCreate(B); 186079bdfe76SSatish Balay B->data = (void *) (b = PetscNew(Mat_MPIBAIJ)); CHKPTRQ(b); 186179bdfe76SSatish Balay PetscMemzero(b,sizeof(Mat_MPIBAIJ)); 186279bdfe76SSatish Balay PetscMemcpy(&B->ops,&MatOps,sizeof(struct _MatOps)); 18634c50302cSBarry Smith 186479bdfe76SSatish Balay B->destroy = MatDestroy_MPIBAIJ; 186579bdfe76SSatish Balay B->view = MatView_MPIBAIJ; 186690f02eecSBarry Smith B->mapping = 0; 186779bdfe76SSatish Balay B->factor = 0; 186879bdfe76SSatish Balay B->assembled = PETSC_FALSE; 186979bdfe76SSatish Balay 1870e0fa3b82SLois Curfman McInnes B->insertmode = NOT_SET_VALUES; 187179bdfe76SSatish Balay MPI_Comm_rank(comm,&b->rank); 187279bdfe76SSatish Balay MPI_Comm_size(comm,&b->size); 187379bdfe76SSatish Balay 1874d64ed03dSBarry Smith if ( m == PETSC_DECIDE && (d_nnz != PETSC_NULL || o_nnz != PETSC_NULL)) { 1875a8c6a408SBarry Smith SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Cannot have PETSC_DECIDE rows but set d_nnz or o_nnz"); 1876d64ed03dSBarry Smith } 1877a8c6a408SBarry Smith if ( M == PETSC_DECIDE && m == PETSC_DECIDE) { 1878a8c6a408SBarry Smith SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"either M or m should be specified"); 1879a8c6a408SBarry Smith } 1880a8c6a408SBarry Smith if ( N == PETSC_DECIDE && n == PETSC_DECIDE) { 1881a8c6a408SBarry Smith SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"either N or n should be specified"); 1882a8c6a408SBarry Smith } 1883cee3aa6bSSatish Balay if ( M != PETSC_DECIDE && m != PETSC_DECIDE) M = PETSC_DECIDE; 1884cee3aa6bSSatish Balay if ( N != PETSC_DECIDE && n != PETSC_DECIDE) N = PETSC_DECIDE; 188579bdfe76SSatish Balay 188679bdfe76SSatish Balay if (M == PETSC_DECIDE || N == PETSC_DECIDE) { 188779bdfe76SSatish Balay work[0] = m; work[1] = n; 188879bdfe76SSatish Balay mbs = m/bs; nbs = n/bs; 1889ca161407SBarry Smith ierr = MPI_Allreduce( work, sum,2,MPI_INT,MPI_SUM,comm );CHKERRQ(ierr); 189079bdfe76SSatish Balay if (M == PETSC_DECIDE) {M = sum[0]; Mbs = M/bs;} 189179bdfe76SSatish Balay if (N == PETSC_DECIDE) {N = sum[1]; Nbs = N/bs;} 189279bdfe76SSatish Balay } 189379bdfe76SSatish Balay if (m == PETSC_DECIDE) { 189479bdfe76SSatish Balay Mbs = M/bs; 1895a8c6a408SBarry Smith if (Mbs*bs != M) SETERRQ(PETSC_ERR_ARG_SIZ,0,"No of global rows must be divisible by blocksize"); 189679bdfe76SSatish Balay mbs = Mbs/b->size + ((Mbs % b->size) > b->rank); 189779bdfe76SSatish Balay m = mbs*bs; 189879bdfe76SSatish Balay } 189979bdfe76SSatish Balay if (n == PETSC_DECIDE) { 190079bdfe76SSatish Balay Nbs = N/bs; 1901a8c6a408SBarry Smith if (Nbs*bs != N) SETERRQ(PETSC_ERR_ARG_SIZ,0,"No of global cols must be divisible by blocksize"); 190279bdfe76SSatish Balay nbs = Nbs/b->size + ((Nbs % b->size) > b->rank); 190379bdfe76SSatish Balay n = nbs*bs; 190479bdfe76SSatish Balay } 1905a8c6a408SBarry Smith if (mbs*bs != m || nbs*bs != n) { 1906a8c6a408SBarry Smith SETERRQ(PETSC_ERR_ARG_SIZ,0,"No of local rows, cols must be divisible by blocksize"); 1907a8c6a408SBarry Smith } 190879bdfe76SSatish Balay 190979bdfe76SSatish Balay b->m = m; B->m = m; 191079bdfe76SSatish Balay b->n = n; B->n = n; 191179bdfe76SSatish Balay b->N = N; B->N = N; 191279bdfe76SSatish Balay b->M = M; B->M = M; 191379bdfe76SSatish Balay b->bs = bs; 191479bdfe76SSatish Balay b->bs2 = bs*bs; 191579bdfe76SSatish Balay b->mbs = mbs; 191679bdfe76SSatish Balay b->nbs = nbs; 191779bdfe76SSatish Balay b->Mbs = Mbs; 191879bdfe76SSatish Balay b->Nbs = Nbs; 191979bdfe76SSatish Balay 192079bdfe76SSatish Balay /* build local table of row and column ownerships */ 192179bdfe76SSatish Balay b->rowners = (int *) PetscMalloc(2*(b->size+2)*sizeof(int)); CHKPTRQ(b->rowners); 1922f09e8eb9SSatish Balay PLogObjectMemory(B,2*(b->size+2)*sizeof(int)+sizeof(struct _p_Mat)+sizeof(Mat_MPIBAIJ)); 19230ac07820SSatish Balay b->cowners = b->rowners + b->size + 2; 1924ca161407SBarry Smith ierr = MPI_Allgather(&mbs,1,MPI_INT,b->rowners+1,1,MPI_INT,comm);CHKERRQ(ierr); 192579bdfe76SSatish Balay b->rowners[0] = 0; 192679bdfe76SSatish Balay for ( i=2; i<=b->size; i++ ) { 192779bdfe76SSatish Balay b->rowners[i] += b->rowners[i-1]; 192879bdfe76SSatish Balay } 192979bdfe76SSatish Balay b->rstart = b->rowners[b->rank]; 193079bdfe76SSatish Balay b->rend = b->rowners[b->rank+1]; 19314fa0d573SSatish Balay b->rstart_bs = b->rstart * bs; 19324fa0d573SSatish Balay b->rend_bs = b->rend * bs; 19334fa0d573SSatish Balay 1934ca161407SBarry Smith ierr = MPI_Allgather(&nbs,1,MPI_INT,b->cowners+1,1,MPI_INT,comm);CHKERRQ(ierr); 193579bdfe76SSatish Balay b->cowners[0] = 0; 193679bdfe76SSatish Balay for ( i=2; i<=b->size; i++ ) { 193779bdfe76SSatish Balay b->cowners[i] += b->cowners[i-1]; 193879bdfe76SSatish Balay } 193979bdfe76SSatish Balay b->cstart = b->cowners[b->rank]; 194079bdfe76SSatish Balay b->cend = b->cowners[b->rank+1]; 19414fa0d573SSatish Balay b->cstart_bs = b->cstart * bs; 19424fa0d573SSatish Balay b->cend_bs = b->cend * bs; 194379bdfe76SSatish Balay 1944a07cd24cSSatish Balay 194579bdfe76SSatish Balay if (d_nz == PETSC_DEFAULT) d_nz = 5; 1946029af93fSBarry Smith ierr = MatCreateSeqBAIJ(PETSC_COMM_SELF,bs,m,n,d_nz,d_nnz,&b->A); CHKERRQ(ierr); 194779bdfe76SSatish Balay PLogObjectParent(B,b->A); 194879bdfe76SSatish Balay if (o_nz == PETSC_DEFAULT) o_nz = 0; 1949029af93fSBarry Smith ierr = MatCreateSeqBAIJ(PETSC_COMM_SELF,bs,m,N,o_nz,o_nnz,&b->B); CHKERRQ(ierr); 195079bdfe76SSatish Balay PLogObjectParent(B,b->B); 195179bdfe76SSatish Balay 195279bdfe76SSatish Balay /* build cache for off array entries formed */ 195379bdfe76SSatish Balay ierr = StashBuild_Private(&b->stash); CHKERRQ(ierr); 195490f02eecSBarry Smith b->donotstash = 0; 195579bdfe76SSatish Balay b->colmap = 0; 195679bdfe76SSatish Balay b->garray = 0; 195779bdfe76SSatish Balay b->roworiented = 1; 195879bdfe76SSatish Balay 195930793edcSSatish Balay /* stuff used in block assembly */ 196030793edcSSatish Balay b->barray = 0; 196130793edcSSatish Balay 196279bdfe76SSatish Balay /* stuff used for matrix vector multiply */ 196379bdfe76SSatish Balay b->lvec = 0; 196479bdfe76SSatish Balay b->Mvctx = 0; 196579bdfe76SSatish Balay 196679bdfe76SSatish Balay /* stuff for MatGetRow() */ 196779bdfe76SSatish Balay b->rowindices = 0; 196879bdfe76SSatish Balay b->rowvalues = 0; 196979bdfe76SSatish Balay b->getrowactive = PETSC_FALSE; 197079bdfe76SSatish Balay 1971a07cd24cSSatish Balay /* hash table stuff */ 1972a07cd24cSSatish Balay b->ht = 0; 1973187ce0cbSSatish Balay b->hd = 0; 19740bdbc534SSatish Balay b->ht_size = 0; 1975187ce0cbSSatish Balay b->ht_total_ct = 0; 1976187ce0cbSSatish Balay b->ht_insert_ct = 0; 1977a07cd24cSSatish Balay 197879bdfe76SSatish Balay *A = B; 19793a40ed3dSBarry Smith PetscFunctionReturn(0); 198079bdfe76SSatish Balay } 1981026e39d0SSatish Balay 19825615d1e5SSatish Balay #undef __FUNC__ 19835615d1e5SSatish Balay #define __FUNC__ "MatConvertSameType_MPIBAIJ" 19840ac07820SSatish Balay static int MatConvertSameType_MPIBAIJ(Mat matin,Mat *newmat,int cpvalues) 19850ac07820SSatish Balay { 19860ac07820SSatish Balay Mat mat; 19870ac07820SSatish Balay Mat_MPIBAIJ *a,*oldmat = (Mat_MPIBAIJ *) matin->data; 19880ac07820SSatish Balay int ierr, len=0, flg; 19890ac07820SSatish Balay 1990d64ed03dSBarry Smith PetscFunctionBegin; 19910ac07820SSatish Balay *newmat = 0; 1992d4bb536fSBarry Smith PetscHeaderCreate(mat,_p_Mat,MAT_COOKIE,MATMPIBAIJ,matin->comm,MatDestroy,MatView); 19930ac07820SSatish Balay PLogObjectCreate(mat); 19940ac07820SSatish Balay mat->data = (void *) (a = PetscNew(Mat_MPIBAIJ)); CHKPTRQ(a); 19950ac07820SSatish Balay PetscMemcpy(&mat->ops,&MatOps,sizeof(struct _MatOps)); 19960ac07820SSatish Balay mat->destroy = MatDestroy_MPIBAIJ; 19970ac07820SSatish Balay mat->view = MatView_MPIBAIJ; 19980ac07820SSatish Balay mat->factor = matin->factor; 19990ac07820SSatish Balay mat->assembled = PETSC_TRUE; 20000ac07820SSatish Balay 20010ac07820SSatish Balay a->m = mat->m = oldmat->m; 20020ac07820SSatish Balay a->n = mat->n = oldmat->n; 20030ac07820SSatish Balay a->M = mat->M = oldmat->M; 20040ac07820SSatish Balay a->N = mat->N = oldmat->N; 20050ac07820SSatish Balay 20060ac07820SSatish Balay a->bs = oldmat->bs; 20070ac07820SSatish Balay a->bs2 = oldmat->bs2; 20080ac07820SSatish Balay a->mbs = oldmat->mbs; 20090ac07820SSatish Balay a->nbs = oldmat->nbs; 20100ac07820SSatish Balay a->Mbs = oldmat->Mbs; 20110ac07820SSatish Balay a->Nbs = oldmat->Nbs; 20120ac07820SSatish Balay 20130ac07820SSatish Balay a->rstart = oldmat->rstart; 20140ac07820SSatish Balay a->rend = oldmat->rend; 20150ac07820SSatish Balay a->cstart = oldmat->cstart; 20160ac07820SSatish Balay a->cend = oldmat->cend; 20170ac07820SSatish Balay a->size = oldmat->size; 20180ac07820SSatish Balay a->rank = oldmat->rank; 2019e0fa3b82SLois Curfman McInnes mat->insertmode = NOT_SET_VALUES; 20200ac07820SSatish Balay a->rowvalues = 0; 20210ac07820SSatish Balay a->getrowactive = PETSC_FALSE; 202230793edcSSatish Balay a->barray = 0; 20230ac07820SSatish Balay 20240ac07820SSatish Balay a->rowners = (int *) PetscMalloc(2*(a->size+2)*sizeof(int)); CHKPTRQ(a->rowners); 2025f09e8eb9SSatish Balay PLogObjectMemory(mat,2*(a->size+2)*sizeof(int)+sizeof(struct _p_Mat)+sizeof(Mat_MPIBAIJ)); 20260ac07820SSatish Balay a->cowners = a->rowners + a->size + 2; 20270ac07820SSatish Balay PetscMemcpy(a->rowners,oldmat->rowners,2*(a->size+2)*sizeof(int)); 20280ac07820SSatish Balay ierr = StashInitialize_Private(&a->stash); CHKERRQ(ierr); 20290ac07820SSatish Balay if (oldmat->colmap) { 20300ac07820SSatish Balay a->colmap = (int *) PetscMalloc((a->Nbs)*sizeof(int));CHKPTRQ(a->colmap); 20310ac07820SSatish Balay PLogObjectMemory(mat,(a->Nbs)*sizeof(int)); 20320ac07820SSatish Balay PetscMemcpy(a->colmap,oldmat->colmap,(a->Nbs)*sizeof(int)); 20330ac07820SSatish Balay } else a->colmap = 0; 20340ac07820SSatish Balay if (oldmat->garray && (len = ((Mat_SeqBAIJ *) (oldmat->B->data))->nbs)) { 20350ac07820SSatish Balay a->garray = (int *) PetscMalloc(len*sizeof(int)); CHKPTRQ(a->garray); 20360ac07820SSatish Balay PLogObjectMemory(mat,len*sizeof(int)); 20370ac07820SSatish Balay PetscMemcpy(a->garray,oldmat->garray,len*sizeof(int)); 20380ac07820SSatish Balay } else a->garray = 0; 20390ac07820SSatish Balay 20400ac07820SSatish Balay ierr = VecDuplicate(oldmat->lvec,&a->lvec); CHKERRQ(ierr); 20410ac07820SSatish Balay PLogObjectParent(mat,a->lvec); 20420ac07820SSatish Balay ierr = VecScatterCopy(oldmat->Mvctx,&a->Mvctx); CHKERRQ(ierr); 20430ac07820SSatish Balay PLogObjectParent(mat,a->Mvctx); 20440ac07820SSatish Balay ierr = MatConvert(oldmat->A,MATSAME,&a->A); CHKERRQ(ierr); 20450ac07820SSatish Balay PLogObjectParent(mat,a->A); 20460ac07820SSatish Balay ierr = MatConvert(oldmat->B,MATSAME,&a->B); CHKERRQ(ierr); 20470ac07820SSatish Balay PLogObjectParent(mat,a->B); 20480ac07820SSatish Balay ierr = OptionsHasName(PETSC_NULL,"-help",&flg); CHKERRQ(ierr); 20490ac07820SSatish Balay if (flg) { 20500ac07820SSatish Balay ierr = MatPrintHelp(mat); CHKERRQ(ierr); 20510ac07820SSatish Balay } 20520ac07820SSatish Balay *newmat = mat; 20533a40ed3dSBarry Smith PetscFunctionReturn(0); 20540ac07820SSatish Balay } 205557b952d6SSatish Balay 205657b952d6SSatish Balay #include "sys.h" 205757b952d6SSatish Balay 20585615d1e5SSatish Balay #undef __FUNC__ 20595615d1e5SSatish Balay #define __FUNC__ "MatLoad_MPIBAIJ" 206057b952d6SSatish Balay int MatLoad_MPIBAIJ(Viewer viewer,MatType type,Mat *newmat) 206157b952d6SSatish Balay { 206257b952d6SSatish Balay Mat A; 206357b952d6SSatish Balay int i, nz, ierr, j,rstart, rend, fd; 206457b952d6SSatish Balay Scalar *vals,*buf; 206557b952d6SSatish Balay MPI_Comm comm = ((PetscObject)viewer)->comm; 206657b952d6SSatish Balay MPI_Status status; 2067cee3aa6bSSatish Balay int header[4],rank,size,*rowlengths = 0,M,N,m,*rowners,*browners,maxnz,*cols; 206857b952d6SSatish Balay int *locrowlens,*sndcounts = 0,*procsnz = 0, jj,*mycols,*ibuf; 206957b952d6SSatish Balay int flg,tag = ((PetscObject)viewer)->tag,bs=1,bs2,Mbs,mbs,extra_rows; 207057b952d6SSatish Balay int *dlens,*odlens,*mask,*masked1,*masked2,rowcount,odcount; 207157b952d6SSatish Balay int dcount,kmax,k,nzcount,tmp; 207257b952d6SSatish Balay 2073d64ed03dSBarry Smith PetscFunctionBegin; 207457b952d6SSatish Balay ierr = OptionsGetInt(PETSC_NULL,"-matload_block_size",&bs,&flg);CHKERRQ(ierr); 207557b952d6SSatish Balay bs2 = bs*bs; 207657b952d6SSatish Balay 207757b952d6SSatish Balay MPI_Comm_size(comm,&size); MPI_Comm_rank(comm,&rank); 207857b952d6SSatish Balay if (!rank) { 207957b952d6SSatish Balay ierr = ViewerBinaryGetDescriptor(viewer,&fd); CHKERRQ(ierr); 2080e5638eb3SBarry Smith ierr = PetscBinaryRead(fd,(char *)header,4,PETSC_INT); CHKERRQ(ierr); 2081a8c6a408SBarry Smith if (header[0] != MAT_COOKIE) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,0,"not matrix object"); 2082d64ed03dSBarry Smith if (header[3] < 0) { 2083a8c6a408SBarry Smith SETERRQ(PETSC_ERR_FILE_UNEXPECTED,1,"Matrix stored in special format, cannot load as MPIBAIJ"); 2084d64ed03dSBarry Smith } 20856c5fab8fSBarry Smith } 2086d64ed03dSBarry Smith 2087ca161407SBarry Smith ierr = MPI_Bcast(header+1,3,MPI_INT,0,comm);CHKERRQ(ierr); 208857b952d6SSatish Balay M = header[1]; N = header[2]; 208957b952d6SSatish Balay 2090a8c6a408SBarry Smith if (M != N) SETERRQ(PETSC_ERR_SUP,0,"Can only do square matrices"); 209157b952d6SSatish Balay 209257b952d6SSatish Balay /* 209357b952d6SSatish Balay This code adds extra rows to make sure the number of rows is 209457b952d6SSatish Balay divisible by the blocksize 209557b952d6SSatish Balay */ 209657b952d6SSatish Balay Mbs = M/bs; 209757b952d6SSatish Balay extra_rows = bs - M + bs*(Mbs); 209857b952d6SSatish Balay if (extra_rows == bs) extra_rows = 0; 209957b952d6SSatish Balay else Mbs++; 210057b952d6SSatish Balay if (extra_rows &&!rank) { 2101b0267e0aSLois Curfman McInnes PLogInfo(0,"MatLoad_MPIBAIJ:Padding loaded matrix to match blocksize\n"); 210257b952d6SSatish Balay } 2103537820f0SBarry Smith 210457b952d6SSatish Balay /* determine ownership of all rows */ 210557b952d6SSatish Balay mbs = Mbs/size + ((Mbs % size) > rank); 210657b952d6SSatish Balay m = mbs * bs; 2107cee3aa6bSSatish Balay rowners = (int *) PetscMalloc(2*(size+2)*sizeof(int)); CHKPTRQ(rowners); 2108cee3aa6bSSatish Balay browners = rowners + size + 1; 2109ca161407SBarry Smith ierr = MPI_Allgather(&mbs,1,MPI_INT,rowners+1,1,MPI_INT,comm);CHKERRQ(ierr); 211057b952d6SSatish Balay rowners[0] = 0; 2111cee3aa6bSSatish Balay for ( i=2; i<=size; i++ ) rowners[i] += rowners[i-1]; 2112cee3aa6bSSatish Balay for ( i=0; i<=size; i++ ) browners[i] = rowners[i]*bs; 211357b952d6SSatish Balay rstart = rowners[rank]; 211457b952d6SSatish Balay rend = rowners[rank+1]; 211557b952d6SSatish Balay 211657b952d6SSatish Balay /* distribute row lengths to all processors */ 211757b952d6SSatish Balay locrowlens = (int*) PetscMalloc( (rend-rstart)*bs*sizeof(int) ); CHKPTRQ(locrowlens); 211857b952d6SSatish Balay if (!rank) { 211957b952d6SSatish Balay rowlengths = (int*) PetscMalloc( (M+extra_rows)*sizeof(int) ); CHKPTRQ(rowlengths); 2120e5638eb3SBarry Smith ierr = PetscBinaryRead(fd,rowlengths,M,PETSC_INT); CHKERRQ(ierr); 212157b952d6SSatish Balay for ( i=0; i<extra_rows; i++ ) rowlengths[M+i] = 1; 212257b952d6SSatish Balay sndcounts = (int*) PetscMalloc( size*sizeof(int) ); CHKPTRQ(sndcounts); 2123cee3aa6bSSatish Balay for ( i=0; i<size; i++ ) sndcounts[i] = browners[i+1] - browners[i]; 2124ca161407SBarry Smith ierr = MPI_Scatterv(rowlengths,sndcounts,browners,MPI_INT,locrowlens,(rend-rstart)*bs,MPI_INT,0,comm);CHKERRQ(ierr); 212557b952d6SSatish Balay PetscFree(sndcounts); 2126d64ed03dSBarry Smith } else { 2127ca161407SBarry Smith ierr = MPI_Scatterv(0,0,0,MPI_INT,locrowlens,(rend-rstart)*bs,MPI_INT, 0,comm);CHKERRQ(ierr); 212857b952d6SSatish Balay } 212957b952d6SSatish Balay 213057b952d6SSatish Balay if (!rank) { 213157b952d6SSatish Balay /* calculate the number of nonzeros on each processor */ 213257b952d6SSatish Balay procsnz = (int*) PetscMalloc( size*sizeof(int) ); CHKPTRQ(procsnz); 213357b952d6SSatish Balay PetscMemzero(procsnz,size*sizeof(int)); 213457b952d6SSatish Balay for ( i=0; i<size; i++ ) { 213557b952d6SSatish Balay for ( j=rowners[i]*bs; j< rowners[i+1]*bs; j++ ) { 213657b952d6SSatish Balay procsnz[i] += rowlengths[j]; 213757b952d6SSatish Balay } 213857b952d6SSatish Balay } 213957b952d6SSatish Balay PetscFree(rowlengths); 214057b952d6SSatish Balay 214157b952d6SSatish Balay /* determine max buffer needed and allocate it */ 214257b952d6SSatish Balay maxnz = 0; 214357b952d6SSatish Balay for ( i=0; i<size; i++ ) { 214457b952d6SSatish Balay maxnz = PetscMax(maxnz,procsnz[i]); 214557b952d6SSatish Balay } 214657b952d6SSatish Balay cols = (int *) PetscMalloc( maxnz*sizeof(int) ); CHKPTRQ(cols); 214757b952d6SSatish Balay 214857b952d6SSatish Balay /* read in my part of the matrix column indices */ 214957b952d6SSatish Balay nz = procsnz[0]; 215057b952d6SSatish Balay ibuf = (int *) PetscMalloc( nz*sizeof(int) ); CHKPTRQ(ibuf); 215157b952d6SSatish Balay mycols = ibuf; 2152cee3aa6bSSatish Balay if (size == 1) nz -= extra_rows; 2153e5638eb3SBarry Smith ierr = PetscBinaryRead(fd,mycols,nz,PETSC_INT); CHKERRQ(ierr); 2154cee3aa6bSSatish Balay if (size == 1) for (i=0; i< extra_rows; i++) { mycols[nz+i] = M+i; } 2155cee3aa6bSSatish Balay 215657b952d6SSatish Balay /* read in every ones (except the last) and ship off */ 215757b952d6SSatish Balay for ( i=1; i<size-1; i++ ) { 215857b952d6SSatish Balay nz = procsnz[i]; 2159e5638eb3SBarry Smith ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT); CHKERRQ(ierr); 2160ca161407SBarry Smith ierr = MPI_Send(cols,nz,MPI_INT,i,tag,comm);CHKERRQ(ierr); 216157b952d6SSatish Balay } 216257b952d6SSatish Balay /* read in the stuff for the last proc */ 216357b952d6SSatish Balay if ( size != 1 ) { 216457b952d6SSatish Balay nz = procsnz[size-1] - extra_rows; /* the extra rows are not on the disk */ 2165e5638eb3SBarry Smith ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT); CHKERRQ(ierr); 216657b952d6SSatish Balay for ( i=0; i<extra_rows; i++ ) cols[nz+i] = M+i; 2167ca161407SBarry Smith ierr = MPI_Send(cols,nz+extra_rows,MPI_INT,size-1,tag,comm);CHKERRQ(ierr); 216857b952d6SSatish Balay } 216957b952d6SSatish Balay PetscFree(cols); 2170d64ed03dSBarry Smith } else { 217157b952d6SSatish Balay /* determine buffer space needed for message */ 217257b952d6SSatish Balay nz = 0; 217357b952d6SSatish Balay for ( i=0; i<m; i++ ) { 217457b952d6SSatish Balay nz += locrowlens[i]; 217557b952d6SSatish Balay } 217657b952d6SSatish Balay ibuf = (int*) PetscMalloc( nz*sizeof(int) ); CHKPTRQ(ibuf); 217757b952d6SSatish Balay mycols = ibuf; 217857b952d6SSatish Balay /* receive message of column indices*/ 2179ca161407SBarry Smith ierr = MPI_Recv(mycols,nz,MPI_INT,0,tag,comm,&status);CHKERRQ(ierr); 2180ca161407SBarry Smith ierr = MPI_Get_count(&status,MPI_INT,&maxnz);CHKERRQ(ierr); 2181a8c6a408SBarry Smith if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,0,"something is wrong with file"); 218257b952d6SSatish Balay } 218357b952d6SSatish Balay 218457b952d6SSatish Balay /* loop over local rows, determining number of off diagonal entries */ 2185cee3aa6bSSatish Balay dlens = (int *) PetscMalloc( 2*(rend-rstart+1)*sizeof(int) ); CHKPTRQ(dlens); 2186cee3aa6bSSatish Balay odlens = dlens + (rend-rstart); 218757b952d6SSatish Balay mask = (int *) PetscMalloc( 3*Mbs*sizeof(int) ); CHKPTRQ(mask); 2188cee3aa6bSSatish Balay PetscMemzero(mask,3*Mbs*sizeof(int)); 218957b952d6SSatish Balay masked1 = mask + Mbs; 219057b952d6SSatish Balay masked2 = masked1 + Mbs; 219157b952d6SSatish Balay rowcount = 0; nzcount = 0; 219257b952d6SSatish Balay for ( i=0; i<mbs; i++ ) { 219357b952d6SSatish Balay dcount = 0; 219457b952d6SSatish Balay odcount = 0; 219557b952d6SSatish Balay for ( j=0; j<bs; j++ ) { 219657b952d6SSatish Balay kmax = locrowlens[rowcount]; 219757b952d6SSatish Balay for ( k=0; k<kmax; k++ ) { 219857b952d6SSatish Balay tmp = mycols[nzcount++]/bs; 219957b952d6SSatish Balay if (!mask[tmp]) { 220057b952d6SSatish Balay mask[tmp] = 1; 220157b952d6SSatish Balay if (tmp < rstart || tmp >= rend ) masked2[odcount++] = tmp; 220257b952d6SSatish Balay else masked1[dcount++] = tmp; 220357b952d6SSatish Balay } 220457b952d6SSatish Balay } 220557b952d6SSatish Balay rowcount++; 220657b952d6SSatish Balay } 2207cee3aa6bSSatish Balay 220857b952d6SSatish Balay dlens[i] = dcount; 220957b952d6SSatish Balay odlens[i] = odcount; 2210cee3aa6bSSatish Balay 221157b952d6SSatish Balay /* zero out the mask elements we set */ 221257b952d6SSatish Balay for ( j=0; j<dcount; j++ ) mask[masked1[j]] = 0; 221357b952d6SSatish Balay for ( j=0; j<odcount; j++ ) mask[masked2[j]] = 0; 221457b952d6SSatish Balay } 2215cee3aa6bSSatish Balay 221657b952d6SSatish Balay /* create our matrix */ 2217537820f0SBarry Smith ierr = MatCreateMPIBAIJ(comm,bs,m,PETSC_DECIDE,M+extra_rows,N+extra_rows,0,dlens,0,odlens,newmat); 2218537820f0SBarry Smith CHKERRQ(ierr); 221957b952d6SSatish Balay A = *newmat; 22206d4a8577SBarry Smith MatSetOption(A,MAT_COLUMNS_SORTED); 222157b952d6SSatish Balay 222257b952d6SSatish Balay if (!rank) { 222357b952d6SSatish Balay buf = (Scalar *) PetscMalloc( maxnz*sizeof(Scalar) ); CHKPTRQ(buf); 222457b952d6SSatish Balay /* read in my part of the matrix numerical values */ 222557b952d6SSatish Balay nz = procsnz[0]; 222657b952d6SSatish Balay vals = buf; 2227cee3aa6bSSatish Balay mycols = ibuf; 2228cee3aa6bSSatish Balay if (size == 1) nz -= extra_rows; 2229e5638eb3SBarry Smith ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR); CHKERRQ(ierr); 2230cee3aa6bSSatish Balay if (size == 1) for (i=0; i< extra_rows; i++) { vals[nz+i] = 1.0; } 2231537820f0SBarry Smith 223257b952d6SSatish Balay /* insert into matrix */ 223357b952d6SSatish Balay jj = rstart*bs; 223457b952d6SSatish Balay for ( i=0; i<m; i++ ) { 223557b952d6SSatish Balay ierr = MatSetValues(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr); 223657b952d6SSatish Balay mycols += locrowlens[i]; 223757b952d6SSatish Balay vals += locrowlens[i]; 223857b952d6SSatish Balay jj++; 223957b952d6SSatish Balay } 224057b952d6SSatish Balay /* read in other processors (except the last one) and ship out */ 224157b952d6SSatish Balay for ( i=1; i<size-1; i++ ) { 224257b952d6SSatish Balay nz = procsnz[i]; 224357b952d6SSatish Balay vals = buf; 2244e5638eb3SBarry Smith ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR); CHKERRQ(ierr); 2245ca161407SBarry Smith ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,A->tag,comm);CHKERRQ(ierr); 224657b952d6SSatish Balay } 224757b952d6SSatish Balay /* the last proc */ 224857b952d6SSatish Balay if ( size != 1 ){ 224957b952d6SSatish Balay nz = procsnz[i] - extra_rows; 2250cee3aa6bSSatish Balay vals = buf; 2251e5638eb3SBarry Smith ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR); CHKERRQ(ierr); 225257b952d6SSatish Balay for ( i=0; i<extra_rows; i++ ) vals[nz+i] = 1.0; 2253ca161407SBarry Smith ierr = MPI_Send(vals,nz+extra_rows,MPIU_SCALAR,size-1,A->tag,comm);CHKERRQ(ierr); 225457b952d6SSatish Balay } 225557b952d6SSatish Balay PetscFree(procsnz); 2256d64ed03dSBarry Smith } else { 225757b952d6SSatish Balay /* receive numeric values */ 225857b952d6SSatish Balay buf = (Scalar*) PetscMalloc( nz*sizeof(Scalar) ); CHKPTRQ(buf); 225957b952d6SSatish Balay 226057b952d6SSatish Balay /* receive message of values*/ 226157b952d6SSatish Balay vals = buf; 2262cee3aa6bSSatish Balay mycols = ibuf; 2263ca161407SBarry Smith ierr = MPI_Recv(vals,nz,MPIU_SCALAR,0,A->tag,comm,&status);CHKERRQ(ierr); 2264ca161407SBarry Smith ierr = MPI_Get_count(&status,MPIU_SCALAR,&maxnz);CHKERRQ(ierr); 2265a8c6a408SBarry Smith if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,0,"something is wrong with file"); 226657b952d6SSatish Balay 226757b952d6SSatish Balay /* insert into matrix */ 226857b952d6SSatish Balay jj = rstart*bs; 2269cee3aa6bSSatish Balay for ( i=0; i<m; i++ ) { 227057b952d6SSatish Balay ierr = MatSetValues(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr); 227157b952d6SSatish Balay mycols += locrowlens[i]; 227257b952d6SSatish Balay vals += locrowlens[i]; 227357b952d6SSatish Balay jj++; 227457b952d6SSatish Balay } 227557b952d6SSatish Balay } 227657b952d6SSatish Balay PetscFree(locrowlens); 227757b952d6SSatish Balay PetscFree(buf); 227857b952d6SSatish Balay PetscFree(ibuf); 227957b952d6SSatish Balay PetscFree(rowners); 228057b952d6SSatish Balay PetscFree(dlens); 2281cee3aa6bSSatish Balay PetscFree(mask); 22826d4a8577SBarry Smith ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY); CHKERRQ(ierr); 22836d4a8577SBarry Smith ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY); CHKERRQ(ierr); 22843a40ed3dSBarry Smith PetscFunctionReturn(0); 228557b952d6SSatish Balay } 228657b952d6SSatish Balay 228757b952d6SSatish Balay 2288