1be1d678aSKris Buschelman #define PETSCMAT_DLL 279bdfe76SSatish Balay 37c4f633dSBarry Smith #include "../src/mat/impls/baij/mpi/mpibaij.h" /*I "petscmat.h" I*/ 479bdfe76SSatish Balay 5dfbe8321SBarry Smith EXTERN PetscErrorCode MatSetUpMultiply_MPIBAIJ(Mat); 6dfbe8321SBarry Smith EXTERN PetscErrorCode DisAssemble_MPIBAIJ(Mat); 7b24ad042SBarry Smith EXTERN PetscErrorCode MatIncreaseOverlap_MPIBAIJ(Mat,PetscInt,IS[],PetscInt); 8b24ad042SBarry Smith EXTERN PetscErrorCode MatGetSubMatrices_MPIBAIJ(Mat,PetscInt,const IS[],const IS[],MatReuse,Mat *[]); 9b24ad042SBarry Smith EXTERN PetscErrorCode MatGetValues_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt [],PetscScalar []); 10b24ad042SBarry Smith EXTERN PetscErrorCode MatSetValues_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt [],const PetscScalar [],InsertMode); 11b24ad042SBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode); 12b24ad042SBarry Smith EXTERN PetscErrorCode MatGetRow_SeqBAIJ(Mat,PetscInt,PetscInt*,PetscInt*[],PetscScalar*[]); 13b24ad042SBarry Smith EXTERN PetscErrorCode MatRestoreRow_SeqBAIJ(Mat,PetscInt,PetscInt*,PetscInt*[],PetscScalar*[]); 14f4df32b1SMatthew Knepley EXTERN PetscErrorCode MatZeroRows_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscScalar); 1593fea6afSBarry Smith 164a2ae208SSatish Balay #undef __FUNCT__ 17985db425SBarry Smith #define __FUNCT__ "MatGetRowMaxAbs_MPIBAIJ" 18985db425SBarry Smith PetscErrorCode MatGetRowMaxAbs_MPIBAIJ(Mat A,Vec v,PetscInt idx[]) 197843d17aSBarry Smith { 207843d17aSBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 21dfbe8321SBarry Smith PetscErrorCode ierr; 22985db425SBarry Smith PetscInt i,*idxb = 0; 2387828ca2SBarry Smith PetscScalar *va,*vb; 247843d17aSBarry Smith Vec vtmp; 257843d17aSBarry Smith 267843d17aSBarry Smith PetscFunctionBegin; 27985db425SBarry Smith ierr = MatGetRowMaxAbs(a->A,v,idx);CHKERRQ(ierr); 281ebc52fbSHong Zhang ierr = VecGetArray(v,&va);CHKERRQ(ierr); 29985db425SBarry Smith if (idx) { 30192daf7cSBarry Smith for (i=0; i<A->rmap->n; i++) {if (PetscAbsScalar(va[i])) idx[i] += A->cmap->rstart;} 31985db425SBarry Smith } 327843d17aSBarry Smith 33d0f46423SBarry Smith ierr = VecCreateSeq(PETSC_COMM_SELF,A->rmap->n,&vtmp);CHKERRQ(ierr); 34d0f46423SBarry Smith if (idx) {ierr = PetscMalloc(A->rmap->n*sizeof(PetscInt),&idxb);CHKERRQ(ierr);} 35985db425SBarry Smith ierr = MatGetRowMaxAbs(a->B,vtmp,idxb);CHKERRQ(ierr); 361ebc52fbSHong Zhang ierr = VecGetArray(vtmp,&vb);CHKERRQ(ierr); 377843d17aSBarry Smith 38d0f46423SBarry Smith for (i=0; i<A->rmap->n; i++){ 39d0f46423SBarry Smith if (PetscAbsScalar(va[i]) < PetscAbsScalar(vb[i])) {va[i] = vb[i]; if (idx) idx[i] = A->cmap->bs*a->garray[idxb[i]/A->cmap->bs] + (idxb[i] % A->cmap->bs);} 407843d17aSBarry Smith } 417843d17aSBarry Smith 421ebc52fbSHong Zhang ierr = VecRestoreArray(v,&va);CHKERRQ(ierr); 431ebc52fbSHong Zhang ierr = VecRestoreArray(vtmp,&vb);CHKERRQ(ierr); 44985db425SBarry Smith if (idxb) {ierr = PetscFree(idxb);CHKERRQ(ierr);} 45ac355199SBarry Smith ierr = VecDestroy(vtmp);CHKERRQ(ierr); 467843d17aSBarry Smith PetscFunctionReturn(0); 477843d17aSBarry Smith } 487843d17aSBarry Smith 497fc3c18eSBarry Smith EXTERN_C_BEGIN 504a2ae208SSatish Balay #undef __FUNCT__ 514a2ae208SSatish Balay #define __FUNCT__ "MatStoreValues_MPIBAIJ" 52be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatStoreValues_MPIBAIJ(Mat mat) 537fc3c18eSBarry Smith { 547fc3c18eSBarry Smith Mat_MPIBAIJ *aij = (Mat_MPIBAIJ *)mat->data; 55dfbe8321SBarry Smith PetscErrorCode ierr; 567fc3c18eSBarry Smith 577fc3c18eSBarry Smith PetscFunctionBegin; 587fc3c18eSBarry Smith ierr = MatStoreValues(aij->A);CHKERRQ(ierr); 597fc3c18eSBarry Smith ierr = MatStoreValues(aij->B);CHKERRQ(ierr); 607fc3c18eSBarry Smith PetscFunctionReturn(0); 617fc3c18eSBarry Smith } 627fc3c18eSBarry Smith EXTERN_C_END 637fc3c18eSBarry Smith 647fc3c18eSBarry Smith EXTERN_C_BEGIN 654a2ae208SSatish Balay #undef __FUNCT__ 664a2ae208SSatish Balay #define __FUNCT__ "MatRetrieveValues_MPIBAIJ" 67be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatRetrieveValues_MPIBAIJ(Mat mat) 687fc3c18eSBarry Smith { 697fc3c18eSBarry Smith Mat_MPIBAIJ *aij = (Mat_MPIBAIJ *)mat->data; 70dfbe8321SBarry Smith PetscErrorCode ierr; 717fc3c18eSBarry Smith 727fc3c18eSBarry Smith PetscFunctionBegin; 737fc3c18eSBarry Smith ierr = MatRetrieveValues(aij->A);CHKERRQ(ierr); 747fc3c18eSBarry Smith ierr = MatRetrieveValues(aij->B);CHKERRQ(ierr); 757fc3c18eSBarry Smith PetscFunctionReturn(0); 767fc3c18eSBarry Smith } 777fc3c18eSBarry Smith EXTERN_C_END 787fc3c18eSBarry Smith 79537820f0SBarry Smith /* 80537820f0SBarry Smith Local utility routine that creates a mapping from the global column 8157b952d6SSatish Balay number to the local number in the off-diagonal part of the local 8257b952d6SSatish Balay storage of the matrix. This is done in a non scable way since the 8357b952d6SSatish Balay length of colmap equals the global matrix length. 8457b952d6SSatish Balay */ 854a2ae208SSatish Balay #undef __FUNCT__ 864a2ae208SSatish Balay #define __FUNCT__ "CreateColmap_MPIBAIJ_Private" 87dfbe8321SBarry Smith PetscErrorCode CreateColmap_MPIBAIJ_Private(Mat mat) 8857b952d6SSatish Balay { 8957b952d6SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 9057b952d6SSatish Balay Mat_SeqBAIJ *B = (Mat_SeqBAIJ*)baij->B->data; 916849ba73SBarry Smith PetscErrorCode ierr; 92d0f46423SBarry Smith PetscInt nbs = B->nbs,i,bs=mat->rmap->bs; 9357b952d6SSatish Balay 94d64ed03dSBarry Smith PetscFunctionBegin; 95aa482453SBarry Smith #if defined (PETSC_USE_CTABLE) 96f14a1c24SBarry Smith ierr = PetscTableCreate(baij->nbs,&baij->colmap);CHKERRQ(ierr); 9748e59246SSatish Balay for (i=0; i<nbs; i++){ 980f5bd95cSBarry Smith ierr = PetscTableAdd(baij->colmap,baij->garray[i]+1,i*bs+1);CHKERRQ(ierr); 9948e59246SSatish Balay } 10048e59246SSatish Balay #else 101b24ad042SBarry Smith ierr = PetscMalloc((baij->Nbs+1)*sizeof(PetscInt),&baij->colmap);CHKERRQ(ierr); 10252e6d16bSBarry Smith ierr = PetscLogObjectMemory(mat,baij->Nbs*sizeof(PetscInt));CHKERRQ(ierr); 103b24ad042SBarry Smith ierr = PetscMemzero(baij->colmap,baij->Nbs*sizeof(PetscInt));CHKERRQ(ierr); 104928fc39bSSatish Balay for (i=0; i<nbs; i++) baij->colmap[baij->garray[i]] = i*bs+1; 10548e59246SSatish Balay #endif 1063a40ed3dSBarry Smith PetscFunctionReturn(0); 10757b952d6SSatish Balay } 10857b952d6SSatish Balay 10980c1aa95SSatish Balay #define CHUNKSIZE 10 11080c1aa95SSatish Balay 111f5e9677aSSatish Balay #define MatSetValues_SeqBAIJ_A_Private(row,col,value,addv) \ 11280c1aa95SSatish Balay { \ 11380c1aa95SSatish Balay \ 11480c1aa95SSatish Balay brow = row/bs; \ 11580c1aa95SSatish Balay rp = aj + ai[brow]; ap = aa + bs2*ai[brow]; \ 116ac7a638eSSatish Balay rmax = aimax[brow]; nrow = ailen[brow]; \ 11780c1aa95SSatish Balay bcol = col/bs; \ 11880c1aa95SSatish Balay ridx = row % bs; cidx = col % bs; \ 119ab26458aSBarry Smith low = 0; high = nrow; \ 120ab26458aSBarry Smith while (high-low > 3) { \ 121ab26458aSBarry Smith t = (low+high)/2; \ 122ab26458aSBarry Smith if (rp[t] > bcol) high = t; \ 123ab26458aSBarry Smith else low = t; \ 124ab26458aSBarry Smith } \ 125ab26458aSBarry Smith for (_i=low; _i<high; _i++) { \ 12680c1aa95SSatish Balay if (rp[_i] > bcol) break; \ 12780c1aa95SSatish Balay if (rp[_i] == bcol) { \ 12880c1aa95SSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 129eada6651SSatish Balay if (addv == ADD_VALUES) *bap += value; \ 130eada6651SSatish Balay else *bap = value; \ 131ac7a638eSSatish Balay goto a_noinsert; \ 13280c1aa95SSatish Balay } \ 13380c1aa95SSatish Balay } \ 13489280ab3SLois Curfman McInnes if (a->nonew == 1) goto a_noinsert; \ 135085a36d4SBarry Smith if (a->nonew == -1) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \ 136421e10b8SBarry Smith MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,brow,bcol,rmax,aa,ai,aj,rp,ap,aimax,a->nonew,MatScalar); \ 13780c1aa95SSatish Balay N = nrow++ - 1; \ 13880c1aa95SSatish Balay /* shift up all the later entries in this row */ \ 13980c1aa95SSatish Balay for (ii=N; ii>=_i; ii--) { \ 14080c1aa95SSatish Balay rp[ii+1] = rp[ii]; \ 1413eda8832SBarry Smith ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 14280c1aa95SSatish Balay } \ 1433eda8832SBarry Smith if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr); } \ 14480c1aa95SSatish Balay rp[_i] = bcol; \ 14580c1aa95SSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 146ac7a638eSSatish Balay a_noinsert:; \ 14780c1aa95SSatish Balay ailen[brow] = nrow; \ 14880c1aa95SSatish Balay } 14957b952d6SSatish Balay 150ac7a638eSSatish Balay #define MatSetValues_SeqBAIJ_B_Private(row,col,value,addv) \ 151ac7a638eSSatish Balay { \ 152ac7a638eSSatish Balay brow = row/bs; \ 153ac7a638eSSatish Balay rp = bj + bi[brow]; ap = ba + bs2*bi[brow]; \ 154ac7a638eSSatish Balay rmax = bimax[brow]; nrow = bilen[brow]; \ 155ac7a638eSSatish Balay bcol = col/bs; \ 156ac7a638eSSatish Balay ridx = row % bs; cidx = col % bs; \ 157ac7a638eSSatish Balay low = 0; high = nrow; \ 158ac7a638eSSatish Balay while (high-low > 3) { \ 159ac7a638eSSatish Balay t = (low+high)/2; \ 160ac7a638eSSatish Balay if (rp[t] > bcol) high = t; \ 161ac7a638eSSatish Balay else low = t; \ 162ac7a638eSSatish Balay } \ 163ac7a638eSSatish Balay for (_i=low; _i<high; _i++) { \ 164ac7a638eSSatish Balay if (rp[_i] > bcol) break; \ 165ac7a638eSSatish Balay if (rp[_i] == bcol) { \ 166ac7a638eSSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 167ac7a638eSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 168ac7a638eSSatish Balay else *bap = value; \ 169ac7a638eSSatish Balay goto b_noinsert; \ 170ac7a638eSSatish Balay } \ 171ac7a638eSSatish Balay } \ 17289280ab3SLois Curfman McInnes if (b->nonew == 1) goto b_noinsert; \ 173085a36d4SBarry Smith if (b->nonew == -1) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \ 174421e10b8SBarry Smith MatSeqXAIJReallocateAIJ(B,b->mbs,bs2,nrow,brow,bcol,rmax,ba,bi,bj,rp,ap,bimax,b->nonew,MatScalar); \ 175085a36d4SBarry Smith CHKMEMQ;\ 176ac7a638eSSatish Balay N = nrow++ - 1; \ 177ac7a638eSSatish Balay /* shift up all the later entries in this row */ \ 178ac7a638eSSatish Balay for (ii=N; ii>=_i; ii--) { \ 179ac7a638eSSatish Balay rp[ii+1] = rp[ii]; \ 1803eda8832SBarry Smith ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 181ac7a638eSSatish Balay } \ 1823eda8832SBarry Smith if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr);} \ 183ac7a638eSSatish Balay rp[_i] = bcol; \ 184ac7a638eSSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 185ac7a638eSSatish Balay b_noinsert:; \ 186ac7a638eSSatish Balay bilen[brow] = nrow; \ 187ac7a638eSSatish Balay } 188ac7a638eSSatish Balay 1894a2ae208SSatish Balay #undef __FUNCT__ 1904a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_MPIBAIJ" 191b24ad042SBarry Smith PetscErrorCode MatSetValues_MPIBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv) 19257b952d6SSatish Balay { 19357b952d6SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 19493fea6afSBarry Smith MatScalar value; 195273d9f13SBarry Smith PetscTruth roworiented = baij->roworiented; 196dfbe8321SBarry Smith PetscErrorCode ierr; 197b24ad042SBarry Smith PetscInt i,j,row,col; 198d0f46423SBarry Smith PetscInt rstart_orig=mat->rmap->rstart; 199d0f46423SBarry Smith PetscInt rend_orig=mat->rmap->rend,cstart_orig=mat->cmap->rstart; 200d0f46423SBarry Smith PetscInt cend_orig=mat->cmap->rend,bs=mat->rmap->bs; 20157b952d6SSatish Balay 202eada6651SSatish Balay /* Some Variables required in the macro */ 20380c1aa95SSatish Balay Mat A = baij->A; 20480c1aa95SSatish Balay Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)(A)->data; 205b24ad042SBarry Smith PetscInt *aimax=a->imax,*ai=a->i,*ailen=a->ilen,*aj=a->j; 2063eda8832SBarry Smith MatScalar *aa=a->a; 207ac7a638eSSatish Balay 208ac7a638eSSatish Balay Mat B = baij->B; 209ac7a638eSSatish Balay Mat_SeqBAIJ *b = (Mat_SeqBAIJ*)(B)->data; 210b24ad042SBarry Smith PetscInt *bimax=b->imax,*bi=b->i,*bilen=b->ilen,*bj=b->j; 2113eda8832SBarry Smith MatScalar *ba=b->a; 212ac7a638eSSatish Balay 213b24ad042SBarry Smith PetscInt *rp,ii,nrow,_i,rmax,N,brow,bcol; 214b24ad042SBarry Smith PetscInt low,high,t,ridx,cidx,bs2=a->bs2; 2153eda8832SBarry Smith MatScalar *ap,*bap; 21680c1aa95SSatish Balay 217d64ed03dSBarry Smith PetscFunctionBegin; 21857b952d6SSatish Balay for (i=0; i<m; i++) { 2195ef9f2a5SBarry Smith if (im[i] < 0) continue; 2202515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 221d0f46423SBarry Smith if (im[i] >= mat->rmap->N) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],mat->rmap->N-1); 222639f9d9dSBarry Smith #endif 22357b952d6SSatish Balay if (im[i] >= rstart_orig && im[i] < rend_orig) { 22457b952d6SSatish Balay row = im[i] - rstart_orig; 22557b952d6SSatish Balay for (j=0; j<n; j++) { 22657b952d6SSatish Balay if (in[j] >= cstart_orig && in[j] < cend_orig){ 22757b952d6SSatish Balay col = in[j] - cstart_orig; 22857b952d6SSatish Balay if (roworiented) value = v[i*n+j]; else value = v[i+j*m]; 229f5e9677aSSatish Balay MatSetValues_SeqBAIJ_A_Private(row,col,value,addv); 23080c1aa95SSatish Balay /* ierr = MatSetValues_SeqBAIJ(baij->A,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 23173959e64SBarry Smith } else if (in[j] < 0) continue; 2322515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 233d0f46423SBarry Smith else if (in[j] >= mat->cmap->N) {SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",in[i],mat->cmap->N-1);} 234639f9d9dSBarry Smith #endif 23557b952d6SSatish Balay else { 23657b952d6SSatish Balay if (mat->was_assembled) { 237905e6a2fSBarry Smith if (!baij->colmap) { 238905e6a2fSBarry Smith ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 239905e6a2fSBarry Smith } 240aa482453SBarry Smith #if defined (PETSC_USE_CTABLE) 2410f5bd95cSBarry Smith ierr = PetscTableFind(baij->colmap,in[j]/bs + 1,&col);CHKERRQ(ierr); 242bba1ac68SSatish Balay col = col - 1; 24348e59246SSatish Balay #else 244bba1ac68SSatish Balay col = baij->colmap[in[j]/bs] - 1; 24548e59246SSatish Balay #endif 24657b952d6SSatish Balay if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) { 24757b952d6SSatish Balay ierr = DisAssemble_MPIBAIJ(mat);CHKERRQ(ierr); 2488295de27SSatish Balay col = in[j]; 2499bf004c3SSatish Balay /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */ 2509bf004c3SSatish Balay B = baij->B; 2519bf004c3SSatish Balay b = (Mat_SeqBAIJ*)(B)->data; 2529bf004c3SSatish Balay bimax=b->imax;bi=b->i;bilen=b->ilen;bj=b->j; 2539bf004c3SSatish Balay ba=b->a; 254bba1ac68SSatish Balay } else col += in[j]%bs; 2558295de27SSatish Balay } else col = in[j]; 25657b952d6SSatish Balay if (roworiented) value = v[i*n+j]; else value = v[i+j*m]; 25790da58bdSSatish Balay MatSetValues_SeqBAIJ_B_Private(row,col,value,addv); 25890da58bdSSatish Balay /* ierr = MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 25957b952d6SSatish Balay } 26057b952d6SSatish Balay } 261d64ed03dSBarry Smith } else { 26290f02eecSBarry Smith if (!baij->donotstash) { 263ff2fd236SBarry Smith if (roworiented) { 2646fa18ffdSBarry Smith ierr = MatStashValuesRow_Private(&mat->stash,im[i],n,in,v+i*n);CHKERRQ(ierr); 265ff2fd236SBarry Smith } else { 2666fa18ffdSBarry Smith ierr = MatStashValuesCol_Private(&mat->stash,im[i],n,in,v+i,m);CHKERRQ(ierr); 26757b952d6SSatish Balay } 26857b952d6SSatish Balay } 26957b952d6SSatish Balay } 27090f02eecSBarry Smith } 2713a40ed3dSBarry Smith PetscFunctionReturn(0); 27257b952d6SSatish Balay } 27357b952d6SSatish Balay 2744a2ae208SSatish Balay #undef __FUNCT__ 27597e5c40aSBarry Smith #define __FUNCT__ "MatSetValuesBlocked_MPIBAIJ" 27697e5c40aSBarry Smith PetscErrorCode MatSetValuesBlocked_MPIBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv) 277ab26458aSBarry Smith { 278ab26458aSBarry Smith Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 279dd6ea824SBarry Smith const PetscScalar *value; 280f15d580aSBarry Smith MatScalar *barray=baij->barray; 281273d9f13SBarry Smith PetscTruth roworiented = baij->roworiented; 282dfbe8321SBarry Smith PetscErrorCode ierr; 283899cda47SBarry Smith PetscInt i,j,ii,jj,row,col,rstart=baij->rstartbs; 284899cda47SBarry Smith PetscInt rend=baij->rendbs,cstart=baij->cstartbs,stepval; 285d0f46423SBarry Smith PetscInt cend=baij->cendbs,bs=mat->rmap->bs,bs2=baij->bs2; 286ab26458aSBarry Smith 287b16ae2b1SBarry Smith PetscFunctionBegin; 28830793edcSSatish Balay if(!barray) { 28982502324SSatish Balay ierr = PetscMalloc(bs2*sizeof(MatScalar),&barray);CHKERRQ(ierr); 29082502324SSatish Balay baij->barray = barray; 29130793edcSSatish Balay } 29230793edcSSatish Balay 293ab26458aSBarry Smith if (roworiented) { 294ab26458aSBarry Smith stepval = (n-1)*bs; 295ab26458aSBarry Smith } else { 296ab26458aSBarry Smith stepval = (m-1)*bs; 297ab26458aSBarry Smith } 298ab26458aSBarry Smith for (i=0; i<m; i++) { 2995ef9f2a5SBarry Smith if (im[i] < 0) continue; 3002515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 30177431f27SBarry Smith if (im[i] >= baij->Mbs) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large, row %D max %D",im[i],baij->Mbs-1); 302ab26458aSBarry Smith #endif 303ab26458aSBarry Smith if (im[i] >= rstart && im[i] < rend) { 304ab26458aSBarry Smith row = im[i] - rstart; 305ab26458aSBarry Smith for (j=0; j<n; j++) { 30615b57d14SSatish Balay /* If NumCol = 1 then a copy is not required */ 30715b57d14SSatish Balay if ((roworiented) && (n == 1)) { 308f15d580aSBarry Smith barray = (MatScalar*)v + i*bs2; 30915b57d14SSatish Balay } else if((!roworiented) && (m == 1)) { 310f15d580aSBarry Smith barray = (MatScalar*)v + j*bs2; 31115b57d14SSatish Balay } else { /* Here a copy is required */ 312ab26458aSBarry Smith if (roworiented) { 313ab26458aSBarry Smith value = v + i*(stepval+bs)*bs + j*bs; 314ab26458aSBarry Smith } else { 315ab26458aSBarry Smith value = v + j*(stepval+bs)*bs + i*bs; 316abef11f7SSatish Balay } 31747513183SBarry Smith for (ii=0; ii<bs; ii++,value+=stepval) { 31847513183SBarry Smith for (jj=0; jj<bs; jj++) { 31930793edcSSatish Balay *barray++ = *value++; 32047513183SBarry Smith } 32147513183SBarry Smith } 32230793edcSSatish Balay barray -=bs2; 32315b57d14SSatish Balay } 324abef11f7SSatish Balay 325abef11f7SSatish Balay if (in[j] >= cstart && in[j] < cend){ 326abef11f7SSatish Balay col = in[j] - cstart; 32797e5c40aSBarry Smith ierr = MatSetValuesBlocked_SeqBAIJ(baij->A,1,&row,1,&col,barray,addv);CHKERRQ(ierr); 328ab26458aSBarry Smith } 3295ef9f2a5SBarry Smith else if (in[j] < 0) continue; 3302515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 33177431f27SBarry Smith else if (in[j] >= baij->Nbs) {SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large, col %D max %D",in[j],baij->Nbs-1);} 332ab26458aSBarry Smith #endif 333ab26458aSBarry Smith else { 334ab26458aSBarry Smith if (mat->was_assembled) { 335ab26458aSBarry Smith if (!baij->colmap) { 336ab26458aSBarry Smith ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 337ab26458aSBarry Smith } 338a5eb4965SSatish Balay 3392515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 340aa482453SBarry Smith #if defined (PETSC_USE_CTABLE) 341b24ad042SBarry Smith { PetscInt data; 3420f5bd95cSBarry Smith ierr = PetscTableFind(baij->colmap,in[j]+1,&data);CHKERRQ(ierr); 34329bbc08cSBarry Smith if ((data - 1) % bs) SETERRQ(PETSC_ERR_PLIB,"Incorrect colmap"); 344fa46199cSSatish Balay } 34548e59246SSatish Balay #else 34629bbc08cSBarry Smith if ((baij->colmap[in[j]] - 1) % bs) SETERRQ(PETSC_ERR_PLIB,"Incorrect colmap"); 347a5eb4965SSatish Balay #endif 34848e59246SSatish Balay #endif 349aa482453SBarry Smith #if defined (PETSC_USE_CTABLE) 3500f5bd95cSBarry Smith ierr = PetscTableFind(baij->colmap,in[j]+1,&col);CHKERRQ(ierr); 351fa46199cSSatish Balay col = (col - 1)/bs; 35248e59246SSatish Balay #else 353a5eb4965SSatish Balay col = (baij->colmap[in[j]] - 1)/bs; 35448e59246SSatish Balay #endif 355ab26458aSBarry Smith if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) { 356ab26458aSBarry Smith ierr = DisAssemble_MPIBAIJ(mat);CHKERRQ(ierr); 357ab26458aSBarry Smith col = in[j]; 358ab26458aSBarry Smith } 359ab26458aSBarry Smith } 360ab26458aSBarry Smith else col = in[j]; 36197e5c40aSBarry Smith ierr = MatSetValuesBlocked_SeqBAIJ(baij->B,1,&row,1,&col,barray,addv);CHKERRQ(ierr); 362ab26458aSBarry Smith } 363ab26458aSBarry Smith } 364d64ed03dSBarry Smith } else { 365ab26458aSBarry Smith if (!baij->donotstash) { 366ff2fd236SBarry Smith if (roworiented) { 3676fa18ffdSBarry Smith ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 368ff2fd236SBarry Smith } else { 3696fa18ffdSBarry Smith ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 370ff2fd236SBarry Smith } 371abef11f7SSatish Balay } 372ab26458aSBarry Smith } 373ab26458aSBarry Smith } 3743a40ed3dSBarry Smith PetscFunctionReturn(0); 375ab26458aSBarry Smith } 3766fa18ffdSBarry Smith 3770bdbc534SSatish Balay #define HASH_KEY 0.6180339887 378b24ad042SBarry Smith #define HASH(size,key,tmp) (tmp = (key)*HASH_KEY,(PetscInt)((size)*(tmp-(PetscInt)tmp))) 379b24ad042SBarry Smith /* #define HASH(size,key) ((PetscInt)((size)*fmod(((key)*HASH_KEY),1))) */ 380b24ad042SBarry Smith /* #define HASH(size,key,tmp) ((PetscInt)((size)*fmod(((key)*HASH_KEY),1))) */ 3814a2ae208SSatish Balay #undef __FUNCT__ 38297e5c40aSBarry Smith #define __FUNCT__ "MatSetValues_MPIBAIJ_HT" 38397e5c40aSBarry Smith PetscErrorCode MatSetValues_MPIBAIJ_HT(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv) 3840bdbc534SSatish Balay { 3850bdbc534SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 386273d9f13SBarry Smith PetscTruth roworiented = baij->roworiented; 387dfbe8321SBarry Smith PetscErrorCode ierr; 388b24ad042SBarry Smith PetscInt i,j,row,col; 389d0f46423SBarry Smith PetscInt rstart_orig=mat->rmap->rstart; 390d0f46423SBarry Smith PetscInt rend_orig=mat->rmap->rend,Nbs=baij->Nbs; 391d0f46423SBarry Smith PetscInt h1,key,size=baij->ht_size,bs=mat->rmap->bs,*HT=baij->ht,idx; 392329f5518SBarry Smith PetscReal tmp; 3933eda8832SBarry Smith MatScalar **HD = baij->hd,value; 3942515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 395b24ad042SBarry Smith PetscInt total_ct=baij->ht_total_ct,insert_ct=baij->ht_insert_ct; 3964a15367fSSatish Balay #endif 3970bdbc534SSatish Balay 3980bdbc534SSatish Balay PetscFunctionBegin; 3990bdbc534SSatish Balay 4000bdbc534SSatish Balay for (i=0; i<m; i++) { 4012515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 40229bbc08cSBarry Smith if (im[i] < 0) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Negative row"); 403d0f46423SBarry Smith if (im[i] >= mat->rmap->N) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],mat->rmap->N-1); 4040bdbc534SSatish Balay #endif 4050bdbc534SSatish Balay row = im[i]; 406c2760754SSatish Balay if (row >= rstart_orig && row < rend_orig) { 4070bdbc534SSatish Balay for (j=0; j<n; j++) { 4080bdbc534SSatish Balay col = in[j]; 4096fa18ffdSBarry Smith if (roworiented) value = v[i*n+j]; else value = v[i+j*m]; 410b24ad042SBarry Smith /* Look up PetscInto the Hash Table */ 411c2760754SSatish Balay key = (row/bs)*Nbs+(col/bs)+1; 412c2760754SSatish Balay h1 = HASH(size,key,tmp); 4130bdbc534SSatish Balay 414c2760754SSatish Balay 415c2760754SSatish Balay idx = h1; 4162515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 417187ce0cbSSatish Balay insert_ct++; 418187ce0cbSSatish Balay total_ct++; 419187ce0cbSSatish Balay if (HT[idx] != key) { 420187ce0cbSSatish Balay for (idx=h1; (idx<size) && (HT[idx]!=key); idx++,total_ct++); 421187ce0cbSSatish Balay if (idx == size) { 422187ce0cbSSatish Balay for (idx=0; (idx<h1) && (HT[idx]!=key); idx++,total_ct++); 423187ce0cbSSatish Balay if (idx == h1) { 42477431f27SBarry Smith SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"(%D,%D) has no entry in the hash table", row, col); 425187ce0cbSSatish Balay } 426187ce0cbSSatish Balay } 427187ce0cbSSatish Balay } 428187ce0cbSSatish Balay #else 429c2760754SSatish Balay if (HT[idx] != key) { 430c2760754SSatish Balay for (idx=h1; (idx<size) && (HT[idx]!=key); idx++); 431c2760754SSatish Balay if (idx == size) { 432c2760754SSatish Balay for (idx=0; (idx<h1) && (HT[idx]!=key); idx++); 433c2760754SSatish Balay if (idx == h1) { 43477431f27SBarry Smith SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"(%D,%D) has no entry in the hash table", row, col); 435c2760754SSatish Balay } 436c2760754SSatish Balay } 437c2760754SSatish Balay } 438187ce0cbSSatish Balay #endif 439c2760754SSatish Balay /* A HASH table entry is found, so insert the values at the correct address */ 440c2760754SSatish Balay if (addv == ADD_VALUES) *(HD[idx]+ (col % bs)*bs + (row % bs)) += value; 441c2760754SSatish Balay else *(HD[idx]+ (col % bs)*bs + (row % bs)) = value; 4420bdbc534SSatish Balay } 4430bdbc534SSatish Balay } else { 4440bdbc534SSatish Balay if (!baij->donotstash) { 445ff2fd236SBarry Smith if (roworiented) { 4468798bf22SSatish Balay ierr = MatStashValuesRow_Private(&mat->stash,im[i],n,in,v+i*n);CHKERRQ(ierr); 447ff2fd236SBarry Smith } else { 4488798bf22SSatish Balay ierr = MatStashValuesCol_Private(&mat->stash,im[i],n,in,v+i,m);CHKERRQ(ierr); 4490bdbc534SSatish Balay } 4500bdbc534SSatish Balay } 4510bdbc534SSatish Balay } 4520bdbc534SSatish Balay } 4532515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 454187ce0cbSSatish Balay baij->ht_total_ct = total_ct; 455187ce0cbSSatish Balay baij->ht_insert_ct = insert_ct; 456187ce0cbSSatish Balay #endif 4570bdbc534SSatish Balay PetscFunctionReturn(0); 4580bdbc534SSatish Balay } 4590bdbc534SSatish Balay 4604a2ae208SSatish Balay #undef __FUNCT__ 46197e5c40aSBarry Smith #define __FUNCT__ "MatSetValuesBlocked_MPIBAIJ_HT" 46297e5c40aSBarry Smith PetscErrorCode MatSetValuesBlocked_MPIBAIJ_HT(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv) 4630bdbc534SSatish Balay { 4640bdbc534SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 465273d9f13SBarry Smith PetscTruth roworiented = baij->roworiented; 466dfbe8321SBarry Smith PetscErrorCode ierr; 467b24ad042SBarry Smith PetscInt i,j,ii,jj,row,col; 468899cda47SBarry Smith PetscInt rstart=baij->rstartbs; 469d0f46423SBarry Smith PetscInt rend=mat->rmap->rend,stepval,bs=mat->rmap->bs,bs2=baij->bs2,nbs2=n*bs2; 470b24ad042SBarry Smith PetscInt h1,key,size=baij->ht_size,idx,*HT=baij->ht,Nbs=baij->Nbs; 471329f5518SBarry Smith PetscReal tmp; 4723eda8832SBarry Smith MatScalar **HD = baij->hd,*baij_a; 473dd6ea824SBarry Smith const PetscScalar *v_t,*value; 4742515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 475b24ad042SBarry Smith PetscInt total_ct=baij->ht_total_ct,insert_ct=baij->ht_insert_ct; 4764a15367fSSatish Balay #endif 4770bdbc534SSatish Balay 478d0a41580SSatish Balay PetscFunctionBegin; 479d0a41580SSatish Balay 4800bdbc534SSatish Balay if (roworiented) { 4810bdbc534SSatish Balay stepval = (n-1)*bs; 4820bdbc534SSatish Balay } else { 4830bdbc534SSatish Balay stepval = (m-1)*bs; 4840bdbc534SSatish Balay } 4850bdbc534SSatish Balay for (i=0; i<m; i++) { 4862515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 48777431f27SBarry Smith if (im[i] < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %D",im[i]); 48877431f27SBarry Smith if (im[i] >= baij->Mbs) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],baij->Mbs-1); 4890bdbc534SSatish Balay #endif 4900bdbc534SSatish Balay row = im[i]; 491ab715e2cSSatish Balay v_t = v + i*nbs2; 492c2760754SSatish Balay if (row >= rstart && row < rend) { 4930bdbc534SSatish Balay for (j=0; j<n; j++) { 4940bdbc534SSatish Balay col = in[j]; 4950bdbc534SSatish Balay 4960bdbc534SSatish Balay /* Look up into the Hash Table */ 497c2760754SSatish Balay key = row*Nbs+col+1; 498c2760754SSatish Balay h1 = HASH(size,key,tmp); 4990bdbc534SSatish Balay 500c2760754SSatish Balay idx = h1; 5012515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 502187ce0cbSSatish Balay total_ct++; 503187ce0cbSSatish Balay insert_ct++; 504187ce0cbSSatish Balay if (HT[idx] != key) { 505187ce0cbSSatish Balay for (idx=h1; (idx<size) && (HT[idx]!=key); idx++,total_ct++); 506187ce0cbSSatish Balay if (idx == size) { 507187ce0cbSSatish Balay for (idx=0; (idx<h1) && (HT[idx]!=key); idx++,total_ct++); 508187ce0cbSSatish Balay if (idx == h1) { 50977431f27SBarry Smith SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"(%D,%D) has no entry in the hash table", row, col); 510187ce0cbSSatish Balay } 511187ce0cbSSatish Balay } 512187ce0cbSSatish Balay } 513187ce0cbSSatish Balay #else 514c2760754SSatish Balay if (HT[idx] != key) { 515c2760754SSatish Balay for (idx=h1; (idx<size) && (HT[idx]!=key); idx++); 516c2760754SSatish Balay if (idx == size) { 517c2760754SSatish Balay for (idx=0; (idx<h1) && (HT[idx]!=key); idx++); 518c2760754SSatish Balay if (idx == h1) { 51977431f27SBarry Smith SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"(%D,%D) has no entry in the hash table", row, col); 520c2760754SSatish Balay } 521c2760754SSatish Balay } 522c2760754SSatish Balay } 523187ce0cbSSatish Balay #endif 524c2760754SSatish Balay baij_a = HD[idx]; 5250bdbc534SSatish Balay if (roworiented) { 526c2760754SSatish Balay /*value = v + i*(stepval+bs)*bs + j*bs;*/ 527187ce0cbSSatish Balay /* value = v + (i*(stepval+bs)+j)*bs; */ 528187ce0cbSSatish Balay value = v_t; 529187ce0cbSSatish Balay v_t += bs; 530fef45726SSatish Balay if (addv == ADD_VALUES) { 531c2760754SSatish Balay for (ii=0; ii<bs; ii++,value+=stepval) { 532c2760754SSatish Balay for (jj=ii; jj<bs2; jj+=bs) { 533fef45726SSatish Balay baij_a[jj] += *value++; 534b4cc0f5aSSatish Balay } 535b4cc0f5aSSatish Balay } 536fef45726SSatish Balay } else { 537c2760754SSatish Balay for (ii=0; ii<bs; ii++,value+=stepval) { 538c2760754SSatish Balay for (jj=ii; jj<bs2; jj+=bs) { 539fef45726SSatish Balay baij_a[jj] = *value++; 540fef45726SSatish Balay } 541fef45726SSatish Balay } 542fef45726SSatish Balay } 5430bdbc534SSatish Balay } else { 5440bdbc534SSatish Balay value = v + j*(stepval+bs)*bs + i*bs; 545fef45726SSatish Balay if (addv == ADD_VALUES) { 546b4cc0f5aSSatish Balay for (ii=0; ii<bs; ii++,value+=stepval,baij_a+=bs) { 5470bdbc534SSatish Balay for (jj=0; jj<bs; jj++) { 548fef45726SSatish Balay baij_a[jj] += *value++; 549fef45726SSatish Balay } 550fef45726SSatish Balay } 551fef45726SSatish Balay } else { 552fef45726SSatish Balay for (ii=0; ii<bs; ii++,value+=stepval,baij_a+=bs) { 553fef45726SSatish Balay for (jj=0; jj<bs; jj++) { 554fef45726SSatish Balay baij_a[jj] = *value++; 555fef45726SSatish Balay } 556b4cc0f5aSSatish Balay } 5570bdbc534SSatish Balay } 5580bdbc534SSatish Balay } 5590bdbc534SSatish Balay } 5600bdbc534SSatish Balay } else { 5610bdbc534SSatish Balay if (!baij->donotstash) { 5620bdbc534SSatish Balay if (roworiented) { 5638798bf22SSatish Balay ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 5640bdbc534SSatish Balay } else { 5658798bf22SSatish Balay ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 5660bdbc534SSatish Balay } 5670bdbc534SSatish Balay } 5680bdbc534SSatish Balay } 5690bdbc534SSatish Balay } 5702515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 571187ce0cbSSatish Balay baij->ht_total_ct = total_ct; 572187ce0cbSSatish Balay baij->ht_insert_ct = insert_ct; 573187ce0cbSSatish Balay #endif 5740bdbc534SSatish Balay PetscFunctionReturn(0); 5750bdbc534SSatish Balay } 576133cdb44SSatish Balay 5774a2ae208SSatish Balay #undef __FUNCT__ 5784a2ae208SSatish Balay #define __FUNCT__ "MatGetValues_MPIBAIJ" 579b24ad042SBarry Smith PetscErrorCode MatGetValues_MPIBAIJ(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[]) 580d6de1c52SSatish Balay { 581d6de1c52SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 5826849ba73SBarry Smith PetscErrorCode ierr; 583d0f46423SBarry Smith PetscInt bs=mat->rmap->bs,i,j,bsrstart = mat->rmap->rstart,bsrend = mat->rmap->rend; 584d0f46423SBarry Smith PetscInt bscstart = mat->cmap->rstart,bscend = mat->cmap->rend,row,col,data; 585d6de1c52SSatish Balay 586133cdb44SSatish Balay PetscFunctionBegin; 587d6de1c52SSatish Balay for (i=0; i<m; i++) { 58897e567efSBarry Smith if (idxm[i] < 0) continue; /* SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %D",idxm[i]);*/ 589d0f46423SBarry Smith if (idxm[i] >= mat->rmap->N) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",idxm[i],mat->rmap->N-1); 590d6de1c52SSatish Balay if (idxm[i] >= bsrstart && idxm[i] < bsrend) { 591d6de1c52SSatish Balay row = idxm[i] - bsrstart; 592d6de1c52SSatish Balay for (j=0; j<n; j++) { 59397e567efSBarry Smith if (idxn[j] < 0) continue; /* SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Negative column: %D",idxn[j]); */ 594d0f46423SBarry Smith if (idxn[j] >= mat->cmap->N) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",idxn[j],mat->cmap->N-1); 595d6de1c52SSatish Balay if (idxn[j] >= bscstart && idxn[j] < bscend){ 596d6de1c52SSatish Balay col = idxn[j] - bscstart; 59798dd23e9SBarry Smith ierr = MatGetValues_SeqBAIJ(baij->A,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr); 598d64ed03dSBarry Smith } else { 599905e6a2fSBarry Smith if (!baij->colmap) { 600905e6a2fSBarry Smith ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 601905e6a2fSBarry Smith } 602aa482453SBarry Smith #if defined (PETSC_USE_CTABLE) 6030f5bd95cSBarry Smith ierr = PetscTableFind(baij->colmap,idxn[j]/bs+1,&data);CHKERRQ(ierr); 604fa46199cSSatish Balay data --; 60548e59246SSatish Balay #else 60648e59246SSatish Balay data = baij->colmap[idxn[j]/bs]-1; 60748e59246SSatish Balay #endif 60848e59246SSatish Balay if((data < 0) || (baij->garray[data/bs] != idxn[j]/bs)) *(v+i*n+j) = 0.0; 609d9d09a02SSatish Balay else { 61048e59246SSatish Balay col = data + idxn[j]%bs; 61198dd23e9SBarry Smith ierr = MatGetValues_SeqBAIJ(baij->B,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr); 612d6de1c52SSatish Balay } 613d6de1c52SSatish Balay } 614d6de1c52SSatish Balay } 615d64ed03dSBarry Smith } else { 61629bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"Only local values currently supported"); 617d6de1c52SSatish Balay } 618d6de1c52SSatish Balay } 6193a40ed3dSBarry Smith PetscFunctionReturn(0); 620d6de1c52SSatish Balay } 621d6de1c52SSatish Balay 6224a2ae208SSatish Balay #undef __FUNCT__ 6234a2ae208SSatish Balay #define __FUNCT__ "MatNorm_MPIBAIJ" 624dfbe8321SBarry Smith PetscErrorCode MatNorm_MPIBAIJ(Mat mat,NormType type,PetscReal *nrm) 625d6de1c52SSatish Balay { 626d6de1c52SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 627d6de1c52SSatish Balay Mat_SeqBAIJ *amat = (Mat_SeqBAIJ*)baij->A->data,*bmat = (Mat_SeqBAIJ*)baij->B->data; 628dfbe8321SBarry Smith PetscErrorCode ierr; 629d0f46423SBarry Smith PetscInt i,j,bs2=baij->bs2,bs=baij->A->rmap->bs,nz,row,col; 630329f5518SBarry Smith PetscReal sum = 0.0; 6313eda8832SBarry Smith MatScalar *v; 632d6de1c52SSatish Balay 633d64ed03dSBarry Smith PetscFunctionBegin; 634d6de1c52SSatish Balay if (baij->size == 1) { 635064f8208SBarry Smith ierr = MatNorm(baij->A,type,nrm);CHKERRQ(ierr); 636d6de1c52SSatish Balay } else { 637d6de1c52SSatish Balay if (type == NORM_FROBENIUS) { 638d6de1c52SSatish Balay v = amat->a; 6398a62d963SHong Zhang nz = amat->nz*bs2; 6408a62d963SHong Zhang for (i=0; i<nz; i++) { 641aa482453SBarry Smith #if defined(PETSC_USE_COMPLEX) 642329f5518SBarry Smith sum += PetscRealPart(PetscConj(*v)*(*v)); v++; 643d6de1c52SSatish Balay #else 644d6de1c52SSatish Balay sum += (*v)*(*v); v++; 645d6de1c52SSatish Balay #endif 646d6de1c52SSatish Balay } 647d6de1c52SSatish Balay v = bmat->a; 6488a62d963SHong Zhang nz = bmat->nz*bs2; 6498a62d963SHong Zhang for (i=0; i<nz; i++) { 650aa482453SBarry Smith #if defined(PETSC_USE_COMPLEX) 651329f5518SBarry Smith sum += PetscRealPart(PetscConj(*v)*(*v)); v++; 652d6de1c52SSatish Balay #else 653d6de1c52SSatish Balay sum += (*v)*(*v); v++; 654d6de1c52SSatish Balay #endif 655d6de1c52SSatish Balay } 6567adad957SLisandro Dalcin ierr = MPI_Allreduce(&sum,nrm,1,MPIU_REAL,MPI_SUM,((PetscObject)mat)->comm);CHKERRQ(ierr); 657064f8208SBarry Smith *nrm = sqrt(*nrm); 6588a62d963SHong Zhang } else if (type == NORM_1) { /* max column sum */ 6598a62d963SHong Zhang PetscReal *tmp,*tmp2; 660899cda47SBarry Smith PetscInt *jj,*garray=baij->garray,cstart=baij->rstartbs; 661d0f46423SBarry Smith ierr = PetscMalloc((2*mat->cmap->N+1)*sizeof(PetscReal),&tmp);CHKERRQ(ierr); 662d0f46423SBarry Smith tmp2 = tmp + mat->cmap->N; 663d0f46423SBarry Smith ierr = PetscMemzero(tmp,mat->cmap->N*sizeof(PetscReal));CHKERRQ(ierr); 6648a62d963SHong Zhang v = amat->a; jj = amat->j; 6658a62d963SHong Zhang for (i=0; i<amat->nz; i++) { 6668a62d963SHong Zhang for (j=0; j<bs; j++){ 6678a62d963SHong Zhang col = bs*(cstart + *jj) + j; /* column index */ 6688a62d963SHong Zhang for (row=0; row<bs; row++){ 6698a62d963SHong Zhang tmp[col] += PetscAbsScalar(*v); v++; 6708a62d963SHong Zhang } 6718a62d963SHong Zhang } 6728a62d963SHong Zhang jj++; 6738a62d963SHong Zhang } 6748a62d963SHong Zhang v = bmat->a; jj = bmat->j; 6758a62d963SHong Zhang for (i=0; i<bmat->nz; i++) { 6768a62d963SHong Zhang for (j=0; j<bs; j++){ 6778a62d963SHong Zhang col = bs*garray[*jj] + j; 6788a62d963SHong Zhang for (row=0; row<bs; row++){ 6798a62d963SHong Zhang tmp[col] += PetscAbsScalar(*v); v++; 6808a62d963SHong Zhang } 6818a62d963SHong Zhang } 6828a62d963SHong Zhang jj++; 6838a62d963SHong Zhang } 684d0f46423SBarry Smith ierr = MPI_Allreduce(tmp,tmp2,mat->cmap->N,MPIU_REAL,MPI_SUM,((PetscObject)mat)->comm);CHKERRQ(ierr); 6858a62d963SHong Zhang *nrm = 0.0; 686d0f46423SBarry Smith for (j=0; j<mat->cmap->N; j++) { 6878a62d963SHong Zhang if (tmp2[j] > *nrm) *nrm = tmp2[j]; 6888a62d963SHong Zhang } 6898a62d963SHong Zhang ierr = PetscFree(tmp);CHKERRQ(ierr); 6908a62d963SHong Zhang } else if (type == NORM_INFINITY) { /* max row sum */ 691577dd1f9SKris Buschelman PetscReal *sums; 692577dd1f9SKris Buschelman ierr = PetscMalloc(bs*sizeof(PetscReal),&sums);CHKERRQ(ierr) 6938a62d963SHong Zhang sum = 0.0; 6948a62d963SHong Zhang for (j=0; j<amat->mbs; j++) { 6958a62d963SHong Zhang for (row=0; row<bs; row++) sums[row] = 0.0; 6968a62d963SHong Zhang v = amat->a + bs2*amat->i[j]; 6978a62d963SHong Zhang nz = amat->i[j+1]-amat->i[j]; 6988a62d963SHong Zhang for (i=0; i<nz; i++) { 6998a62d963SHong Zhang for (col=0; col<bs; col++){ 7008a62d963SHong Zhang for (row=0; row<bs; row++){ 7018a62d963SHong Zhang sums[row] += PetscAbsScalar(*v); v++; 7028a62d963SHong Zhang } 7038a62d963SHong Zhang } 7048a62d963SHong Zhang } 7058a62d963SHong Zhang v = bmat->a + bs2*bmat->i[j]; 7068a62d963SHong Zhang nz = bmat->i[j+1]-bmat->i[j]; 7078a62d963SHong Zhang for (i=0; i<nz; i++) { 7088a62d963SHong Zhang for (col=0; col<bs; col++){ 7098a62d963SHong Zhang for (row=0; row<bs; row++){ 7108a62d963SHong Zhang sums[row] += PetscAbsScalar(*v); v++; 7118a62d963SHong Zhang } 7128a62d963SHong Zhang } 7138a62d963SHong Zhang } 7148a62d963SHong Zhang for (row=0; row<bs; row++){ 7158a62d963SHong Zhang if (sums[row] > sum) sum = sums[row]; 7168a62d963SHong Zhang } 7178a62d963SHong Zhang } 7187adad957SLisandro Dalcin ierr = MPI_Allreduce(&sum,nrm,1,MPIU_REAL,MPI_MAX,((PetscObject)mat)->comm);CHKERRQ(ierr); 719577dd1f9SKris Buschelman ierr = PetscFree(sums);CHKERRQ(ierr); 720d64ed03dSBarry Smith } else { 72129bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"No support for this norm yet"); 722d6de1c52SSatish Balay } 723d64ed03dSBarry Smith } 7243a40ed3dSBarry Smith PetscFunctionReturn(0); 725d6de1c52SSatish Balay } 72657b952d6SSatish Balay 727fef45726SSatish Balay /* 728fef45726SSatish Balay Creates the hash table, and sets the table 729fef45726SSatish Balay This table is created only once. 730fef45726SSatish Balay If new entried need to be added to the matrix 731fef45726SSatish Balay then the hash table has to be destroyed and 732fef45726SSatish Balay recreated. 733fef45726SSatish Balay */ 7344a2ae208SSatish Balay #undef __FUNCT__ 7354a2ae208SSatish Balay #define __FUNCT__ "MatCreateHashTable_MPIBAIJ_Private" 736dfbe8321SBarry Smith PetscErrorCode MatCreateHashTable_MPIBAIJ_Private(Mat mat,PetscReal factor) 737596b8d2eSBarry Smith { 738596b8d2eSBarry Smith Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 739596b8d2eSBarry Smith Mat A = baij->A,B=baij->B; 740596b8d2eSBarry Smith Mat_SeqBAIJ *a=(Mat_SeqBAIJ *)A->data,*b=(Mat_SeqBAIJ *)B->data; 741b24ad042SBarry Smith PetscInt i,j,k,nz=a->nz+b->nz,h1,*ai=a->i,*aj=a->j,*bi=b->i,*bj=b->j; 7426849ba73SBarry Smith PetscErrorCode ierr; 743899cda47SBarry Smith PetscInt size,bs2=baij->bs2,rstart=baij->rstartbs; 744899cda47SBarry Smith PetscInt cstart=baij->cstartbs,*garray=baij->garray,row,col,Nbs=baij->Nbs; 745b24ad042SBarry Smith PetscInt *HT,key; 7463eda8832SBarry Smith MatScalar **HD; 747329f5518SBarry Smith PetscReal tmp; 7486cf91177SBarry Smith #if defined(PETSC_USE_INFO) 749b24ad042SBarry Smith PetscInt ct=0,max=0; 7504a15367fSSatish Balay #endif 751fef45726SSatish Balay 752d64ed03dSBarry Smith PetscFunctionBegin; 753b24ad042SBarry Smith baij->ht_size=(PetscInt)(factor*nz); 7540bdbc534SSatish Balay size = baij->ht_size; 755fef45726SSatish Balay 7560bdbc534SSatish Balay if (baij->ht) { 7570bdbc534SSatish Balay PetscFunctionReturn(0); 758596b8d2eSBarry Smith } 7590bdbc534SSatish Balay 760fef45726SSatish Balay /* Allocate Memory for Hash Table */ 761b24ad042SBarry Smith ierr = PetscMalloc((size)*(sizeof(PetscInt)+sizeof(MatScalar*))+1,&baij->hd);CHKERRQ(ierr); 762b24ad042SBarry Smith baij->ht = (PetscInt*)(baij->hd + size); 763b9e4cc15SSatish Balay HD = baij->hd; 764a07cd24cSSatish Balay HT = baij->ht; 765b9e4cc15SSatish Balay 766b9e4cc15SSatish Balay 767b24ad042SBarry Smith ierr = PetscMemzero(HD,size*(sizeof(PetscInt)+sizeof(PetscScalar*)));CHKERRQ(ierr); 7680bdbc534SSatish Balay 769596b8d2eSBarry Smith 770596b8d2eSBarry Smith /* Loop Over A */ 7710bdbc534SSatish Balay for (i=0; i<a->mbs; i++) { 772596b8d2eSBarry Smith for (j=ai[i]; j<ai[i+1]; j++) { 7730bdbc534SSatish Balay row = i+rstart; 7740bdbc534SSatish Balay col = aj[j]+cstart; 775596b8d2eSBarry Smith 776187ce0cbSSatish Balay key = row*Nbs + col + 1; 777c2760754SSatish Balay h1 = HASH(size,key,tmp); 7780bdbc534SSatish Balay for (k=0; k<size; k++){ 779958c9bccSBarry Smith if (!HT[(h1+k)%size]) { 7800bdbc534SSatish Balay HT[(h1+k)%size] = key; 7810bdbc534SSatish Balay HD[(h1+k)%size] = a->a + j*bs2; 782596b8d2eSBarry Smith break; 7836cf91177SBarry Smith #if defined(PETSC_USE_INFO) 784187ce0cbSSatish Balay } else { 785187ce0cbSSatish Balay ct++; 786187ce0cbSSatish Balay #endif 787596b8d2eSBarry Smith } 788187ce0cbSSatish Balay } 7896cf91177SBarry Smith #if defined(PETSC_USE_INFO) 790187ce0cbSSatish Balay if (k> max) max = k; 791187ce0cbSSatish Balay #endif 792596b8d2eSBarry Smith } 793596b8d2eSBarry Smith } 794596b8d2eSBarry Smith /* Loop Over B */ 7950bdbc534SSatish Balay for (i=0; i<b->mbs; i++) { 796596b8d2eSBarry Smith for (j=bi[i]; j<bi[i+1]; j++) { 7970bdbc534SSatish Balay row = i+rstart; 7980bdbc534SSatish Balay col = garray[bj[j]]; 799187ce0cbSSatish Balay key = row*Nbs + col + 1; 800c2760754SSatish Balay h1 = HASH(size,key,tmp); 8010bdbc534SSatish Balay for (k=0; k<size; k++){ 802958c9bccSBarry Smith if (!HT[(h1+k)%size]) { 8030bdbc534SSatish Balay HT[(h1+k)%size] = key; 8040bdbc534SSatish Balay HD[(h1+k)%size] = b->a + j*bs2; 805596b8d2eSBarry Smith break; 8066cf91177SBarry Smith #if defined(PETSC_USE_INFO) 807187ce0cbSSatish Balay } else { 808187ce0cbSSatish Balay ct++; 809187ce0cbSSatish Balay #endif 810596b8d2eSBarry Smith } 811187ce0cbSSatish Balay } 8126cf91177SBarry Smith #if defined(PETSC_USE_INFO) 813187ce0cbSSatish Balay if (k> max) max = k; 814187ce0cbSSatish Balay #endif 815596b8d2eSBarry Smith } 816596b8d2eSBarry Smith } 817596b8d2eSBarry Smith 818596b8d2eSBarry Smith /* Print Summary */ 8196cf91177SBarry Smith #if defined(PETSC_USE_INFO) 820c38d4ed2SBarry Smith for (i=0,j=0; i<size; i++) { 821596b8d2eSBarry Smith if (HT[i]) {j++;} 822c38d4ed2SBarry Smith } 8231e2582c4SBarry Smith ierr = PetscInfo2(mat,"Average Search = %5.2f,max search = %D\n",(!j)? 0.0:((PetscReal)(ct+j))/j,max);CHKERRQ(ierr); 824187ce0cbSSatish Balay #endif 8253a40ed3dSBarry Smith PetscFunctionReturn(0); 826596b8d2eSBarry Smith } 82757b952d6SSatish Balay 8284a2ae208SSatish Balay #undef __FUNCT__ 8294a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyBegin_MPIBAIJ" 830dfbe8321SBarry Smith PetscErrorCode MatAssemblyBegin_MPIBAIJ(Mat mat,MatAssemblyType mode) 831bbb85fb3SSatish Balay { 832bbb85fb3SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 833dfbe8321SBarry Smith PetscErrorCode ierr; 834b24ad042SBarry Smith PetscInt nstash,reallocs; 835bbb85fb3SSatish Balay InsertMode addv; 836bbb85fb3SSatish Balay 837bbb85fb3SSatish Balay PetscFunctionBegin; 838bbb85fb3SSatish Balay if (baij->donotstash) { 839bbb85fb3SSatish Balay PetscFunctionReturn(0); 840bbb85fb3SSatish Balay } 841bbb85fb3SSatish Balay 842bbb85fb3SSatish Balay /* make sure all processors are either in INSERTMODE or ADDMODE */ 8437adad957SLisandro Dalcin ierr = MPI_Allreduce(&mat->insertmode,&addv,1,MPI_INT,MPI_BOR,((PetscObject)mat)->comm);CHKERRQ(ierr); 844bbb85fb3SSatish Balay if (addv == (ADD_VALUES|INSERT_VALUES)) { 84529bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Some processors inserted others added"); 846bbb85fb3SSatish Balay } 847bbb85fb3SSatish Balay mat->insertmode = addv; /* in case this processor had no cache */ 848bbb85fb3SSatish Balay 849d0f46423SBarry Smith ierr = MatStashScatterBegin_Private(mat,&mat->stash,mat->rmap->range);CHKERRQ(ierr); 8501e2582c4SBarry Smith ierr = MatStashScatterBegin_Private(mat,&mat->bstash,baij->rangebs);CHKERRQ(ierr); 8518798bf22SSatish Balay ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr); 8521e2582c4SBarry Smith ierr = PetscInfo2(mat,"Stash has %D entries,uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr); 85346680499SSatish Balay ierr = MatStashGetInfo_Private(&mat->bstash,&nstash,&reallocs);CHKERRQ(ierr); 8541e2582c4SBarry Smith ierr = PetscInfo2(mat,"Block-Stash has %D entries, uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr); 855bbb85fb3SSatish Balay PetscFunctionReturn(0); 856bbb85fb3SSatish Balay } 857bbb85fb3SSatish Balay 8584a2ae208SSatish Balay #undef __FUNCT__ 8594a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyEnd_MPIBAIJ" 860dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_MPIBAIJ(Mat mat,MatAssemblyType mode) 861bbb85fb3SSatish Balay { 862bbb85fb3SSatish Balay Mat_MPIBAIJ *baij=(Mat_MPIBAIJ*)mat->data; 86391c97fd4SSatish Balay Mat_SeqBAIJ *a=(Mat_SeqBAIJ*)baij->A->data; 8646849ba73SBarry Smith PetscErrorCode ierr; 865b24ad042SBarry Smith PetscInt i,j,rstart,ncols,flg,bs2=baij->bs2; 866e44c0bd4SBarry Smith PetscInt *row,*col; 867e44c0bd4SBarry Smith PetscTruth r1,r2,r3,other_disassembled; 8683eda8832SBarry Smith MatScalar *val; 869bbb85fb3SSatish Balay InsertMode addv = mat->insertmode; 870b24ad042SBarry Smith PetscMPIInt n; 871bbb85fb3SSatish Balay 87291c97fd4SSatish Balay /* do not use 'b=(Mat_SeqBAIJ*)baij->B->data' as B can be reset in disassembly */ 873bbb85fb3SSatish Balay PetscFunctionBegin; 874bbb85fb3SSatish Balay if (!baij->donotstash) { 875a2d1c673SSatish Balay while (1) { 8768798bf22SSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 877a2d1c673SSatish Balay if (!flg) break; 878a2d1c673SSatish Balay 879bbb85fb3SSatish Balay for (i=0; i<n;) { 880bbb85fb3SSatish Balay /* Now identify the consecutive vals belonging to the same row */ 881bbb85fb3SSatish Balay for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; } 882bbb85fb3SSatish Balay if (j < n) ncols = j-i; 883bbb85fb3SSatish Balay else ncols = n-i; 884bbb85fb3SSatish Balay /* Now assemble all these values with a single function call */ 88597e5c40aSBarry Smith ierr = MatSetValues_MPIBAIJ(mat,1,row+i,ncols,col+i,val+i,addv);CHKERRQ(ierr); 886bbb85fb3SSatish Balay i = j; 887bbb85fb3SSatish Balay } 888bbb85fb3SSatish Balay } 8898798bf22SSatish Balay ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr); 890a2d1c673SSatish Balay /* Now process the block-stash. Since the values are stashed column-oriented, 891a2d1c673SSatish Balay set the roworiented flag to column oriented, and after MatSetValues() 892a2d1c673SSatish Balay restore the original flags */ 893a2d1c673SSatish Balay r1 = baij->roworiented; 894a2d1c673SSatish Balay r2 = a->roworiented; 89591c97fd4SSatish Balay r3 = ((Mat_SeqBAIJ*)baij->B->data)->roworiented; 8967c922b88SBarry Smith baij->roworiented = PETSC_FALSE; 8977c922b88SBarry Smith a->roworiented = PETSC_FALSE; 89891c97fd4SSatish Balay (((Mat_SeqBAIJ*)baij->B->data))->roworiented = PETSC_FALSE; /* b->roworiented */ 899a2d1c673SSatish Balay while (1) { 9008798bf22SSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->bstash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 901a2d1c673SSatish Balay if (!flg) break; 902a2d1c673SSatish Balay 903a2d1c673SSatish Balay for (i=0; i<n;) { 904a2d1c673SSatish Balay /* Now identify the consecutive vals belonging to the same row */ 905a2d1c673SSatish Balay for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; } 906a2d1c673SSatish Balay if (j < n) ncols = j-i; 907a2d1c673SSatish Balay else ncols = n-i; 90897e5c40aSBarry Smith ierr = MatSetValuesBlocked_MPIBAIJ(mat,1,row+i,ncols,col+i,val+i*bs2,addv);CHKERRQ(ierr); 909a2d1c673SSatish Balay i = j; 910a2d1c673SSatish Balay } 911a2d1c673SSatish Balay } 9128798bf22SSatish Balay ierr = MatStashScatterEnd_Private(&mat->bstash);CHKERRQ(ierr); 913a2d1c673SSatish Balay baij->roworiented = r1; 914a2d1c673SSatish Balay a->roworiented = r2; 91591c97fd4SSatish Balay ((Mat_SeqBAIJ*)baij->B->data)->roworiented = r3; /* b->roworiented */ 916bbb85fb3SSatish Balay } 917bbb85fb3SSatish Balay 918bbb85fb3SSatish Balay ierr = MatAssemblyBegin(baij->A,mode);CHKERRQ(ierr); 919bbb85fb3SSatish Balay ierr = MatAssemblyEnd(baij->A,mode);CHKERRQ(ierr); 920bbb85fb3SSatish Balay 921bbb85fb3SSatish Balay /* determine if any processor has disassembled, if so we must 922bbb85fb3SSatish Balay also disassemble ourselfs, in order that we may reassemble. */ 923bbb85fb3SSatish Balay /* 924bbb85fb3SSatish Balay if nonzero structure of submatrix B cannot change then we know that 925bbb85fb3SSatish Balay no processor disassembled thus we can skip this stuff 926bbb85fb3SSatish Balay */ 927bbb85fb3SSatish Balay if (!((Mat_SeqBAIJ*)baij->B->data)->nonew) { 9287adad957SLisandro Dalcin ierr = MPI_Allreduce(&mat->was_assembled,&other_disassembled,1,MPI_INT,MPI_PROD,((PetscObject)mat)->comm);CHKERRQ(ierr); 929bbb85fb3SSatish Balay if (mat->was_assembled && !other_disassembled) { 930bbb85fb3SSatish Balay ierr = DisAssemble_MPIBAIJ(mat);CHKERRQ(ierr); 931bbb85fb3SSatish Balay } 932bbb85fb3SSatish Balay } 933bbb85fb3SSatish Balay 934bbb85fb3SSatish Balay if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) { 935bbb85fb3SSatish Balay ierr = MatSetUpMultiply_MPIBAIJ(mat);CHKERRQ(ierr); 936bbb85fb3SSatish Balay } 93791c97fd4SSatish Balay ((Mat_SeqBAIJ*)baij->B->data)->compressedrow.use = PETSC_TRUE; /* b->compressedrow.use */ 938bbb85fb3SSatish Balay ierr = MatAssemblyBegin(baij->B,mode);CHKERRQ(ierr); 939bbb85fb3SSatish Balay ierr = MatAssemblyEnd(baij->B,mode);CHKERRQ(ierr); 940bbb85fb3SSatish Balay 9416cf91177SBarry Smith #if defined(PETSC_USE_INFO) 942bbb85fb3SSatish Balay if (baij->ht && mode== MAT_FINAL_ASSEMBLY) { 9431e2582c4SBarry Smith ierr = PetscInfo1(mat,"Average Hash Table Search in MatSetValues = %5.2f\n",((PetscReal)baij->ht_total_ct)/baij->ht_insert_ct);CHKERRQ(ierr); 944bbb85fb3SSatish Balay baij->ht_total_ct = 0; 945bbb85fb3SSatish Balay baij->ht_insert_ct = 0; 946bbb85fb3SSatish Balay } 947bbb85fb3SSatish Balay #endif 948bbb85fb3SSatish Balay if (baij->ht_flag && !baij->ht && mode == MAT_FINAL_ASSEMBLY) { 949bbb85fb3SSatish Balay ierr = MatCreateHashTable_MPIBAIJ_Private(mat,baij->ht_fact);CHKERRQ(ierr); 950bbb85fb3SSatish Balay mat->ops->setvalues = MatSetValues_MPIBAIJ_HT; 951bbb85fb3SSatish Balay mat->ops->setvaluesblocked = MatSetValuesBlocked_MPIBAIJ_HT; 952bbb85fb3SSatish Balay } 953bbb85fb3SSatish Balay 954606d414cSSatish Balay ierr = PetscFree(baij->rowvalues);CHKERRQ(ierr); 955606d414cSSatish Balay baij->rowvalues = 0; 956bbb85fb3SSatish Balay PetscFunctionReturn(0); 957bbb85fb3SSatish Balay } 95857b952d6SSatish Balay 9594a2ae208SSatish Balay #undef __FUNCT__ 9604a2ae208SSatish Balay #define __FUNCT__ "MatView_MPIBAIJ_ASCIIorDraworSocket" 9616849ba73SBarry Smith static PetscErrorCode MatView_MPIBAIJ_ASCIIorDraworSocket(Mat mat,PetscViewer viewer) 96257b952d6SSatish Balay { 96357b952d6SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 964dfbe8321SBarry Smith PetscErrorCode ierr; 965b24ad042SBarry Smith PetscMPIInt size = baij->size,rank = baij->rank; 966d0f46423SBarry Smith PetscInt bs = mat->rmap->bs; 96732077d6dSBarry Smith PetscTruth iascii,isdraw; 968b0a32e0cSBarry Smith PetscViewer sviewer; 969f3ef73ceSBarry Smith PetscViewerFormat format; 97057b952d6SSatish Balay 971d64ed03dSBarry Smith PetscFunctionBegin; 97232077d6dSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&iascii);CHKERRQ(ierr); 973fb9695e5SSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr); 97432077d6dSBarry Smith if (iascii) { 975b0a32e0cSBarry Smith ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr); 976456192e2SBarry Smith if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 9774e220ebcSLois Curfman McInnes MatInfo info; 9787adad957SLisandro Dalcin ierr = MPI_Comm_rank(((PetscObject)mat)->comm,&rank);CHKERRQ(ierr); 979d41123aaSBarry Smith ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr); 98077431f27SBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Local rows %D nz %D nz alloced %D bs %D mem %D\n", 981d0f46423SBarry Smith rank,mat->rmap->N,(PetscInt)info.nz_used*bs,(PetscInt)info.nz_allocated*bs, 982d0f46423SBarry Smith mat->rmap->bs,(PetscInt)info.memory);CHKERRQ(ierr); 983d132466eSBarry Smith ierr = MatGetInfo(baij->A,MAT_LOCAL,&info);CHKERRQ(ierr); 98477431f27SBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] on-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used*bs);CHKERRQ(ierr); 985d132466eSBarry Smith ierr = MatGetInfo(baij->B,MAT_LOCAL,&info);CHKERRQ(ierr); 98677431f27SBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] off-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used*bs);CHKERRQ(ierr); 987b0a32e0cSBarry Smith ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 98807d81ca4SBarry Smith ierr = PetscViewerASCIIPrintf(viewer,"Information on VecScatter used in matrix-vector product: \n");CHKERRQ(ierr); 98957b952d6SSatish Balay ierr = VecScatterView(baij->Mvctx,viewer);CHKERRQ(ierr); 9903a40ed3dSBarry Smith PetscFunctionReturn(0); 991fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_INFO) { 99277431f27SBarry Smith ierr = PetscViewerASCIIPrintf(viewer," block size is %D\n",bs);CHKERRQ(ierr); 9933a40ed3dSBarry Smith PetscFunctionReturn(0); 99404929863SHong Zhang } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) { 99504929863SHong Zhang PetscFunctionReturn(0); 99657b952d6SSatish Balay } 99757b952d6SSatish Balay } 99857b952d6SSatish Balay 9990f5bd95cSBarry Smith if (isdraw) { 1000b0a32e0cSBarry Smith PetscDraw draw; 100157b952d6SSatish Balay PetscTruth isnull; 1002b0a32e0cSBarry Smith ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr); 1003b0a32e0cSBarry Smith ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); if (isnull) PetscFunctionReturn(0); 100457b952d6SSatish Balay } 100557b952d6SSatish Balay 100657b952d6SSatish Balay if (size == 1) { 10077adad957SLisandro Dalcin ierr = PetscObjectSetName((PetscObject)baij->A,((PetscObject)mat)->name);CHKERRQ(ierr); 100857b952d6SSatish Balay ierr = MatView(baij->A,viewer);CHKERRQ(ierr); 1009d64ed03dSBarry Smith } else { 101057b952d6SSatish Balay /* assemble the entire matrix onto first processor. */ 101157b952d6SSatish Balay Mat A; 101257b952d6SSatish Balay Mat_SeqBAIJ *Aloc; 1013d0f46423SBarry Smith PetscInt M = mat->rmap->N,N = mat->cmap->N,*ai,*aj,col,i,j,k,*rvals,mbs = baij->mbs; 10143eda8832SBarry Smith MatScalar *a; 101557b952d6SSatish Balay 1016f204ca49SKris Buschelman /* Here we are creating a temporary matrix, so will assume MPIBAIJ is acceptable */ 1017f204ca49SKris Buschelman /* Perhaps this should be the type of mat? */ 10187adad957SLisandro Dalcin ierr = MatCreate(((PetscObject)mat)->comm,&A);CHKERRQ(ierr); 101957b952d6SSatish Balay if (!rank) { 1020f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,M,N,M,N);CHKERRQ(ierr); 1021d64ed03dSBarry Smith } else { 1022f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,0,0,M,N);CHKERRQ(ierr); 102357b952d6SSatish Balay } 1024f204ca49SKris Buschelman ierr = MatSetType(A,MATMPIBAIJ);CHKERRQ(ierr); 1025d0f46423SBarry Smith ierr = MatMPIBAIJSetPreallocation(A,mat->rmap->bs,0,PETSC_NULL,0,PETSC_NULL);CHKERRQ(ierr); 102652e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,A);CHKERRQ(ierr); 102757b952d6SSatish Balay 102857b952d6SSatish Balay /* copy over the A part */ 102957b952d6SSatish Balay Aloc = (Mat_SeqBAIJ*)baij->A->data; 103057b952d6SSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 1031b24ad042SBarry Smith ierr = PetscMalloc(bs*sizeof(PetscInt),&rvals);CHKERRQ(ierr); 103257b952d6SSatish Balay 103357b952d6SSatish Balay for (i=0; i<mbs; i++) { 1034899cda47SBarry Smith rvals[0] = bs*(baij->rstartbs + i); 103557b952d6SSatish Balay for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; } 103657b952d6SSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 1037899cda47SBarry Smith col = (baij->cstartbs+aj[j])*bs; 103857b952d6SSatish Balay for (k=0; k<bs; k++) { 103997e5c40aSBarry Smith ierr = MatSetValues_MPIBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 1040cee3aa6bSSatish Balay col++; a += bs; 104157b952d6SSatish Balay } 104257b952d6SSatish Balay } 104357b952d6SSatish Balay } 104457b952d6SSatish Balay /* copy over the B part */ 104557b952d6SSatish Balay Aloc = (Mat_SeqBAIJ*)baij->B->data; 104657b952d6SSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 104757b952d6SSatish Balay for (i=0; i<mbs; i++) { 1048899cda47SBarry Smith rvals[0] = bs*(baij->rstartbs + i); 104957b952d6SSatish Balay for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; } 105057b952d6SSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 105157b952d6SSatish Balay col = baij->garray[aj[j]]*bs; 105257b952d6SSatish Balay for (k=0; k<bs; k++) { 105397e5c40aSBarry Smith ierr = MatSetValues_MPIBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 1054cee3aa6bSSatish Balay col++; a += bs; 105557b952d6SSatish Balay } 105657b952d6SSatish Balay } 105757b952d6SSatish Balay } 1058606d414cSSatish Balay ierr = PetscFree(rvals);CHKERRQ(ierr); 10596d4a8577SBarry Smith ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 10606d4a8577SBarry Smith ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 106155843e3eSBarry Smith /* 106255843e3eSBarry Smith Everyone has to call to draw the matrix since the graphics waits are 1063b0a32e0cSBarry Smith synchronized across all processors that share the PetscDraw object 106455843e3eSBarry Smith */ 1065b0a32e0cSBarry Smith ierr = PetscViewerGetSingleton(viewer,&sviewer);CHKERRQ(ierr); 1066f14a1c24SBarry Smith if (!rank) { 10677adad957SLisandro Dalcin ierr = PetscObjectSetName((PetscObject)((Mat_MPIBAIJ*)(A->data))->A,((PetscObject)mat)->name);CHKERRQ(ierr); 10686831982aSBarry Smith ierr = MatView(((Mat_MPIBAIJ*)(A->data))->A,sviewer);CHKERRQ(ierr); 106957b952d6SSatish Balay } 1070b0a32e0cSBarry Smith ierr = PetscViewerRestoreSingleton(viewer,&sviewer);CHKERRQ(ierr); 107157b952d6SSatish Balay ierr = MatDestroy(A);CHKERRQ(ierr); 107257b952d6SSatish Balay } 10733a40ed3dSBarry Smith PetscFunctionReturn(0); 107457b952d6SSatish Balay } 107557b952d6SSatish Balay 10764a2ae208SSatish Balay #undef __FUNCT__ 10774a2ae208SSatish Balay #define __FUNCT__ "MatView_MPIBAIJ" 1078dfbe8321SBarry Smith PetscErrorCode MatView_MPIBAIJ(Mat mat,PetscViewer viewer) 107957b952d6SSatish Balay { 1080dfbe8321SBarry Smith PetscErrorCode ierr; 108132077d6dSBarry Smith PetscTruth iascii,isdraw,issocket,isbinary; 108257b952d6SSatish Balay 1083d64ed03dSBarry Smith PetscFunctionBegin; 108432077d6dSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&iascii);CHKERRQ(ierr); 1085fb9695e5SSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr); 1086b0a32e0cSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_SOCKET,&issocket);CHKERRQ(ierr); 1087fb9695e5SSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_BINARY,&isbinary);CHKERRQ(ierr); 108832077d6dSBarry Smith if (iascii || isdraw || issocket || isbinary) { 10897b2a1423SBarry Smith ierr = MatView_MPIBAIJ_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr); 10905cd90555SBarry Smith } else { 109179a5c55eSBarry Smith SETERRQ1(PETSC_ERR_SUP,"Viewer type %s not supported by MPIBAIJ matrices",((PetscObject)viewer)->type_name); 109257b952d6SSatish Balay } 10933a40ed3dSBarry Smith PetscFunctionReturn(0); 109457b952d6SSatish Balay } 109557b952d6SSatish Balay 10964a2ae208SSatish Balay #undef __FUNCT__ 10974a2ae208SSatish Balay #define __FUNCT__ "MatDestroy_MPIBAIJ" 1098dfbe8321SBarry Smith PetscErrorCode MatDestroy_MPIBAIJ(Mat mat) 109979bdfe76SSatish Balay { 110079bdfe76SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 1101dfbe8321SBarry Smith PetscErrorCode ierr; 110279bdfe76SSatish Balay 1103d64ed03dSBarry Smith PetscFunctionBegin; 1104aa482453SBarry Smith #if defined(PETSC_USE_LOG) 1105d0f46423SBarry Smith PetscLogObjectState((PetscObject)mat,"Rows=%D,Cols=%D",mat->rmap->N,mat->cmap->N); 110679bdfe76SSatish Balay #endif 11078798bf22SSatish Balay ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr); 11088798bf22SSatish Balay ierr = MatStashDestroy_Private(&mat->bstash);CHKERRQ(ierr); 110979bdfe76SSatish Balay ierr = MatDestroy(baij->A);CHKERRQ(ierr); 111079bdfe76SSatish Balay ierr = MatDestroy(baij->B);CHKERRQ(ierr); 1111aa482453SBarry Smith #if defined (PETSC_USE_CTABLE) 11129c666560SBarry Smith if (baij->colmap) {ierr = PetscTableDestroy(baij->colmap);CHKERRQ(ierr);} 111348e59246SSatish Balay #else 111405b42c5fSBarry Smith ierr = PetscFree(baij->colmap);CHKERRQ(ierr); 111548e59246SSatish Balay #endif 111605b42c5fSBarry Smith ierr = PetscFree(baij->garray);CHKERRQ(ierr); 1117606d414cSSatish Balay if (baij->lvec) {ierr = VecDestroy(baij->lvec);CHKERRQ(ierr);} 1118606d414cSSatish Balay if (baij->Mvctx) {ierr = VecScatterDestroy(baij->Mvctx);CHKERRQ(ierr);} 111905b42c5fSBarry Smith ierr = PetscFree(baij->rowvalues);CHKERRQ(ierr); 112005b42c5fSBarry Smith ierr = PetscFree(baij->barray);CHKERRQ(ierr); 112105b42c5fSBarry Smith ierr = PetscFree(baij->hd);CHKERRQ(ierr); 1122899cda47SBarry Smith ierr = PetscFree(baij->rangebs);CHKERRQ(ierr); 1123606d414cSSatish Balay ierr = PetscFree(baij);CHKERRQ(ierr); 1124901853e0SKris Buschelman 1125dbd8c25aSHong Zhang ierr = PetscObjectChangeTypeName((PetscObject)mat,0);CHKERRQ(ierr); 1126901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatStoreValues_C","",PETSC_NULL);CHKERRQ(ierr); 1127901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatRetrieveValues_C","",PETSC_NULL);CHKERRQ(ierr); 1128901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatGetDiagonalBlock_C","",PETSC_NULL);CHKERRQ(ierr); 1129901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPIBAIJSetPreallocation_C","",PETSC_NULL);CHKERRQ(ierr); 1130aac34f13SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPIBAIJSetPreallocationCSR_C","",PETSC_NULL);CHKERRQ(ierr); 1131901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDiagonalScaleLocal_C","",PETSC_NULL);CHKERRQ(ierr); 1132901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatSetHashTableFactor_C","",PETSC_NULL);CHKERRQ(ierr); 11333a40ed3dSBarry Smith PetscFunctionReturn(0); 113479bdfe76SSatish Balay } 113579bdfe76SSatish Balay 11364a2ae208SSatish Balay #undef __FUNCT__ 11374a2ae208SSatish Balay #define __FUNCT__ "MatMult_MPIBAIJ" 1138dfbe8321SBarry Smith PetscErrorCode MatMult_MPIBAIJ(Mat A,Vec xx,Vec yy) 1139cee3aa6bSSatish Balay { 1140cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1141dfbe8321SBarry Smith PetscErrorCode ierr; 1142b24ad042SBarry Smith PetscInt nt; 1143cee3aa6bSSatish Balay 1144d64ed03dSBarry Smith PetscFunctionBegin; 1145e1311b90SBarry Smith ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr); 1146d0f46423SBarry Smith if (nt != A->cmap->n) { 114729bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx"); 114847b4a8eaSLois Curfman McInnes } 1149e1311b90SBarry Smith ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr); 1150d0f46423SBarry Smith if (nt != A->rmap->n) { 115129bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible parition of A and yy"); 115247b4a8eaSLois Curfman McInnes } 1153ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1154f830108cSBarry Smith ierr = (*a->A->ops->mult)(a->A,xx,yy);CHKERRQ(ierr); 1155ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1156f830108cSBarry Smith ierr = (*a->B->ops->multadd)(a->B,a->lvec,yy,yy);CHKERRQ(ierr); 11573a40ed3dSBarry Smith PetscFunctionReturn(0); 1158cee3aa6bSSatish Balay } 1159cee3aa6bSSatish Balay 11604a2ae208SSatish Balay #undef __FUNCT__ 11614a2ae208SSatish Balay #define __FUNCT__ "MatMultAdd_MPIBAIJ" 1162dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPIBAIJ(Mat A,Vec xx,Vec yy,Vec zz) 1163cee3aa6bSSatish Balay { 1164cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1165dfbe8321SBarry Smith PetscErrorCode ierr; 1166d64ed03dSBarry Smith 1167d64ed03dSBarry Smith PetscFunctionBegin; 1168ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1169f830108cSBarry Smith ierr = (*a->A->ops->multadd)(a->A,xx,yy,zz);CHKERRQ(ierr); 1170ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1171f830108cSBarry Smith ierr = (*a->B->ops->multadd)(a->B,a->lvec,zz,zz);CHKERRQ(ierr); 11723a40ed3dSBarry Smith PetscFunctionReturn(0); 1173cee3aa6bSSatish Balay } 1174cee3aa6bSSatish Balay 11754a2ae208SSatish Balay #undef __FUNCT__ 11764a2ae208SSatish Balay #define __FUNCT__ "MatMultTranspose_MPIBAIJ" 1177dfbe8321SBarry Smith PetscErrorCode MatMultTranspose_MPIBAIJ(Mat A,Vec xx,Vec yy) 1178cee3aa6bSSatish Balay { 1179cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1180dfbe8321SBarry Smith PetscErrorCode ierr; 1181a5ff213dSBarry Smith PetscTruth merged; 1182cee3aa6bSSatish Balay 1183d64ed03dSBarry Smith PetscFunctionBegin; 1184a5ff213dSBarry Smith ierr = VecScatterGetMerged(a->Mvctx,&merged);CHKERRQ(ierr); 1185cee3aa6bSSatish Balay /* do nondiagonal part */ 11867c922b88SBarry Smith ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr); 1187a5ff213dSBarry Smith if (!merged) { 1188cee3aa6bSSatish Balay /* send it on its way */ 1189ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 1190cee3aa6bSSatish Balay /* do local part */ 11917c922b88SBarry Smith ierr = (*a->A->ops->multtranspose)(a->A,xx,yy);CHKERRQ(ierr); 1192cee3aa6bSSatish Balay /* receive remote parts: note this assumes the values are not actually */ 1193a5ff213dSBarry Smith /* inserted in yy until the next line */ 1194ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 1195a5ff213dSBarry Smith } else { 1196a5ff213dSBarry Smith /* do local part */ 1197a5ff213dSBarry Smith ierr = (*a->A->ops->multtranspose)(a->A,xx,yy);CHKERRQ(ierr); 1198a5ff213dSBarry Smith /* send it on its way */ 1199ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 1200a5ff213dSBarry Smith /* values actually were received in the Begin() but we need to call this nop */ 1201ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 1202a5ff213dSBarry Smith } 12033a40ed3dSBarry Smith PetscFunctionReturn(0); 1204cee3aa6bSSatish Balay } 1205cee3aa6bSSatish Balay 12064a2ae208SSatish Balay #undef __FUNCT__ 12074a2ae208SSatish Balay #define __FUNCT__ "MatMultTransposeAdd_MPIBAIJ" 1208dfbe8321SBarry Smith PetscErrorCode MatMultTransposeAdd_MPIBAIJ(Mat A,Vec xx,Vec yy,Vec zz) 1209cee3aa6bSSatish Balay { 1210cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1211dfbe8321SBarry Smith PetscErrorCode ierr; 1212cee3aa6bSSatish Balay 1213d64ed03dSBarry Smith PetscFunctionBegin; 1214cee3aa6bSSatish Balay /* do nondiagonal part */ 12157c922b88SBarry Smith ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr); 1216cee3aa6bSSatish Balay /* send it on its way */ 1217ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 1218cee3aa6bSSatish Balay /* do local part */ 12197c922b88SBarry Smith ierr = (*a->A->ops->multtransposeadd)(a->A,xx,yy,zz);CHKERRQ(ierr); 1220cee3aa6bSSatish Balay /* receive remote parts: note this assumes the values are not actually */ 1221cee3aa6bSSatish Balay /* inserted in yy until the next line, which is true for my implementation*/ 1222cee3aa6bSSatish Balay /* but is not perhaps always true. */ 1223ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 12243a40ed3dSBarry Smith PetscFunctionReturn(0); 1225cee3aa6bSSatish Balay } 1226cee3aa6bSSatish Balay 1227cee3aa6bSSatish Balay /* 1228cee3aa6bSSatish Balay This only works correctly for square matrices where the subblock A->A is the 1229cee3aa6bSSatish Balay diagonal block 1230cee3aa6bSSatish Balay */ 12314a2ae208SSatish Balay #undef __FUNCT__ 12324a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonal_MPIBAIJ" 1233dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_MPIBAIJ(Mat A,Vec v) 1234cee3aa6bSSatish Balay { 1235cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1236dfbe8321SBarry Smith PetscErrorCode ierr; 1237d64ed03dSBarry Smith 1238d64ed03dSBarry Smith PetscFunctionBegin; 1239d0f46423SBarry Smith if (A->rmap->N != A->cmap->N) SETERRQ(PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block"); 12403a40ed3dSBarry Smith ierr = MatGetDiagonal(a->A,v);CHKERRQ(ierr); 12413a40ed3dSBarry Smith PetscFunctionReturn(0); 1242cee3aa6bSSatish Balay } 1243cee3aa6bSSatish Balay 12444a2ae208SSatish Balay #undef __FUNCT__ 12454a2ae208SSatish Balay #define __FUNCT__ "MatScale_MPIBAIJ" 1246f4df32b1SMatthew Knepley PetscErrorCode MatScale_MPIBAIJ(Mat A,PetscScalar aa) 1247cee3aa6bSSatish Balay { 1248cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1249dfbe8321SBarry Smith PetscErrorCode ierr; 1250d64ed03dSBarry Smith 1251d64ed03dSBarry Smith PetscFunctionBegin; 1252f4df32b1SMatthew Knepley ierr = MatScale(a->A,aa);CHKERRQ(ierr); 1253f4df32b1SMatthew Knepley ierr = MatScale(a->B,aa);CHKERRQ(ierr); 12543a40ed3dSBarry Smith PetscFunctionReturn(0); 1255cee3aa6bSSatish Balay } 1256026e39d0SSatish Balay 12574a2ae208SSatish Balay #undef __FUNCT__ 12584a2ae208SSatish Balay #define __FUNCT__ "MatGetRow_MPIBAIJ" 1259b24ad042SBarry Smith PetscErrorCode MatGetRow_MPIBAIJ(Mat matin,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 1260acdf5bf4SSatish Balay { 1261acdf5bf4SSatish Balay Mat_MPIBAIJ *mat = (Mat_MPIBAIJ*)matin->data; 126287828ca2SBarry Smith PetscScalar *vworkA,*vworkB,**pvA,**pvB,*v_p; 12636849ba73SBarry Smith PetscErrorCode ierr; 1264d0f46423SBarry Smith PetscInt bs = matin->rmap->bs,bs2 = mat->bs2,i,*cworkA,*cworkB,**pcA,**pcB; 1265d0f46423SBarry Smith PetscInt nztot,nzA,nzB,lrow,brstart = matin->rmap->rstart,brend = matin->rmap->rend; 1266899cda47SBarry Smith PetscInt *cmap,*idx_p,cstart = mat->cstartbs; 1267acdf5bf4SSatish Balay 1268d64ed03dSBarry Smith PetscFunctionBegin; 1269abc0a331SBarry Smith if (mat->getrowactive) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Already active"); 1270acdf5bf4SSatish Balay mat->getrowactive = PETSC_TRUE; 1271acdf5bf4SSatish Balay 1272acdf5bf4SSatish Balay if (!mat->rowvalues && (idx || v)) { 1273acdf5bf4SSatish Balay /* 1274acdf5bf4SSatish Balay allocate enough space to hold information from the longest row. 1275acdf5bf4SSatish Balay */ 1276acdf5bf4SSatish Balay Mat_SeqBAIJ *Aa = (Mat_SeqBAIJ*)mat->A->data,*Ba = (Mat_SeqBAIJ*)mat->B->data; 1277b24ad042SBarry Smith PetscInt max = 1,mbs = mat->mbs,tmp; 1278bd16c2feSSatish Balay for (i=0; i<mbs; i++) { 1279acdf5bf4SSatish Balay tmp = Aa->i[i+1] - Aa->i[i] + Ba->i[i+1] - Ba->i[i]; 1280acdf5bf4SSatish Balay if (max < tmp) { max = tmp; } 1281acdf5bf4SSatish Balay } 1282b24ad042SBarry Smith ierr = PetscMalloc(max*bs2*(sizeof(PetscInt)+sizeof(PetscScalar)),&mat->rowvalues);CHKERRQ(ierr); 1283b24ad042SBarry Smith mat->rowindices = (PetscInt*)(mat->rowvalues + max*bs2); 1284acdf5bf4SSatish Balay } 1285acdf5bf4SSatish Balay 128629bbc08cSBarry Smith if (row < brstart || row >= brend) SETERRQ(PETSC_ERR_SUP,"Only local rows") 1287d9d09a02SSatish Balay lrow = row - brstart; 1288acdf5bf4SSatish Balay 1289acdf5bf4SSatish Balay pvA = &vworkA; pcA = &cworkA; pvB = &vworkB; pcB = &cworkB; 1290acdf5bf4SSatish Balay if (!v) {pvA = 0; pvB = 0;} 1291acdf5bf4SSatish Balay if (!idx) {pcA = 0; if (!v) pcB = 0;} 1292f830108cSBarry Smith ierr = (*mat->A->ops->getrow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr); 1293f830108cSBarry Smith ierr = (*mat->B->ops->getrow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr); 1294acdf5bf4SSatish Balay nztot = nzA + nzB; 1295acdf5bf4SSatish Balay 1296acdf5bf4SSatish Balay cmap = mat->garray; 1297acdf5bf4SSatish Balay if (v || idx) { 1298acdf5bf4SSatish Balay if (nztot) { 1299acdf5bf4SSatish Balay /* Sort by increasing column numbers, assuming A and B already sorted */ 1300b24ad042SBarry Smith PetscInt imark = -1; 1301acdf5bf4SSatish Balay if (v) { 1302acdf5bf4SSatish Balay *v = v_p = mat->rowvalues; 1303acdf5bf4SSatish Balay for (i=0; i<nzB; i++) { 1304d9d09a02SSatish Balay if (cmap[cworkB[i]/bs] < cstart) v_p[i] = vworkB[i]; 1305acdf5bf4SSatish Balay else break; 1306acdf5bf4SSatish Balay } 1307acdf5bf4SSatish Balay imark = i; 1308acdf5bf4SSatish Balay for (i=0; i<nzA; i++) v_p[imark+i] = vworkA[i]; 1309acdf5bf4SSatish Balay for (i=imark; i<nzB; i++) v_p[nzA+i] = vworkB[i]; 1310acdf5bf4SSatish Balay } 1311acdf5bf4SSatish Balay if (idx) { 1312acdf5bf4SSatish Balay *idx = idx_p = mat->rowindices; 1313acdf5bf4SSatish Balay if (imark > -1) { 1314acdf5bf4SSatish Balay for (i=0; i<imark; i++) { 1315bd16c2feSSatish Balay idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs; 1316acdf5bf4SSatish Balay } 1317acdf5bf4SSatish Balay } else { 1318acdf5bf4SSatish Balay for (i=0; i<nzB; i++) { 1319d9d09a02SSatish Balay if (cmap[cworkB[i]/bs] < cstart) 1320d9d09a02SSatish Balay idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ; 1321acdf5bf4SSatish Balay else break; 1322acdf5bf4SSatish Balay } 1323acdf5bf4SSatish Balay imark = i; 1324acdf5bf4SSatish Balay } 1325d9d09a02SSatish Balay for (i=0; i<nzA; i++) idx_p[imark+i] = cstart*bs + cworkA[i]; 1326d9d09a02SSatish Balay for (i=imark; i<nzB; i++) idx_p[nzA+i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ; 1327acdf5bf4SSatish Balay } 1328d64ed03dSBarry Smith } else { 1329d212a18eSSatish Balay if (idx) *idx = 0; 1330d212a18eSSatish Balay if (v) *v = 0; 1331d212a18eSSatish Balay } 1332acdf5bf4SSatish Balay } 1333acdf5bf4SSatish Balay *nz = nztot; 1334f830108cSBarry Smith ierr = (*mat->A->ops->restorerow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr); 1335f830108cSBarry Smith ierr = (*mat->B->ops->restorerow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr); 13363a40ed3dSBarry Smith PetscFunctionReturn(0); 1337acdf5bf4SSatish Balay } 1338acdf5bf4SSatish Balay 13394a2ae208SSatish Balay #undef __FUNCT__ 13404a2ae208SSatish Balay #define __FUNCT__ "MatRestoreRow_MPIBAIJ" 1341b24ad042SBarry Smith PetscErrorCode MatRestoreRow_MPIBAIJ(Mat mat,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 1342acdf5bf4SSatish Balay { 1343acdf5bf4SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 1344d64ed03dSBarry Smith 1345d64ed03dSBarry Smith PetscFunctionBegin; 1346abc0a331SBarry Smith if (!baij->getrowactive) { 134729bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"MatGetRow not called"); 1348acdf5bf4SSatish Balay } 1349acdf5bf4SSatish Balay baij->getrowactive = PETSC_FALSE; 13503a40ed3dSBarry Smith PetscFunctionReturn(0); 1351acdf5bf4SSatish Balay } 1352acdf5bf4SSatish Balay 13534a2ae208SSatish Balay #undef __FUNCT__ 13544a2ae208SSatish Balay #define __FUNCT__ "MatZeroEntries_MPIBAIJ" 1355dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_MPIBAIJ(Mat A) 135658667388SSatish Balay { 135758667388SSatish Balay Mat_MPIBAIJ *l = (Mat_MPIBAIJ*)A->data; 1358dfbe8321SBarry Smith PetscErrorCode ierr; 1359d64ed03dSBarry Smith 1360d64ed03dSBarry Smith PetscFunctionBegin; 136158667388SSatish Balay ierr = MatZeroEntries(l->A);CHKERRQ(ierr); 136258667388SSatish Balay ierr = MatZeroEntries(l->B);CHKERRQ(ierr); 13633a40ed3dSBarry Smith PetscFunctionReturn(0); 136458667388SSatish Balay } 13650ac07820SSatish Balay 13664a2ae208SSatish Balay #undef __FUNCT__ 13674a2ae208SSatish Balay #define __FUNCT__ "MatGetInfo_MPIBAIJ" 1368dfbe8321SBarry Smith PetscErrorCode MatGetInfo_MPIBAIJ(Mat matin,MatInfoType flag,MatInfo *info) 13690ac07820SSatish Balay { 13704e220ebcSLois Curfman McInnes Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)matin->data; 13714e220ebcSLois Curfman McInnes Mat A = a->A,B = a->B; 1372dfbe8321SBarry Smith PetscErrorCode ierr; 1373329f5518SBarry Smith PetscReal isend[5],irecv[5]; 13740ac07820SSatish Balay 1375d64ed03dSBarry Smith PetscFunctionBegin; 1376d0f46423SBarry Smith info->block_size = (PetscReal)matin->rmap->bs; 13774e220ebcSLois Curfman McInnes ierr = MatGetInfo(A,MAT_LOCAL,info);CHKERRQ(ierr); 13780e4b21beSBarry Smith isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded; 1379de87f314SBarry Smith isend[3] = info->memory; isend[4] = info->mallocs; 13804e220ebcSLois Curfman McInnes ierr = MatGetInfo(B,MAT_LOCAL,info);CHKERRQ(ierr); 13810e4b21beSBarry Smith isend[0] += info->nz_used; isend[1] += info->nz_allocated; isend[2] += info->nz_unneeded; 1382de87f314SBarry Smith isend[3] += info->memory; isend[4] += info->mallocs; 13830ac07820SSatish Balay if (flag == MAT_LOCAL) { 13844e220ebcSLois Curfman McInnes info->nz_used = isend[0]; 13854e220ebcSLois Curfman McInnes info->nz_allocated = isend[1]; 13864e220ebcSLois Curfman McInnes info->nz_unneeded = isend[2]; 13874e220ebcSLois Curfman McInnes info->memory = isend[3]; 13884e220ebcSLois Curfman McInnes info->mallocs = isend[4]; 13890ac07820SSatish Balay } else if (flag == MAT_GLOBAL_MAX) { 13907adad957SLisandro Dalcin ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_MAX,((PetscObject)matin)->comm);CHKERRQ(ierr); 13914e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 13924e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 13934e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 13944e220ebcSLois Curfman McInnes info->memory = irecv[3]; 13954e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 13960ac07820SSatish Balay } else if (flag == MAT_GLOBAL_SUM) { 13977adad957SLisandro Dalcin ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_SUM,((PetscObject)matin)->comm);CHKERRQ(ierr); 13984e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 13994e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 14004e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 14014e220ebcSLois Curfman McInnes info->memory = irecv[3]; 14024e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 1403d41123aaSBarry Smith } else { 140477431f27SBarry Smith SETERRQ1(PETSC_ERR_ARG_WRONG,"Unknown MatInfoType argument %d",(int)flag); 14050ac07820SSatish Balay } 14064e220ebcSLois Curfman McInnes info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */ 14074e220ebcSLois Curfman McInnes info->fill_ratio_needed = 0; 14084e220ebcSLois Curfman McInnes info->factor_mallocs = 0; 14093a40ed3dSBarry Smith PetscFunctionReturn(0); 14100ac07820SSatish Balay } 14110ac07820SSatish Balay 14124a2ae208SSatish Balay #undef __FUNCT__ 14134a2ae208SSatish Balay #define __FUNCT__ "MatSetOption_MPIBAIJ" 14144e0d8c25SBarry Smith PetscErrorCode MatSetOption_MPIBAIJ(Mat A,MatOption op,PetscTruth flg) 141558667388SSatish Balay { 141658667388SSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1417dfbe8321SBarry Smith PetscErrorCode ierr; 141858667388SSatish Balay 1419d64ed03dSBarry Smith PetscFunctionBegin; 142012c028f9SKris Buschelman switch (op) { 1421512a5fc5SBarry Smith case MAT_NEW_NONZERO_LOCATIONS: 142212c028f9SKris Buschelman case MAT_NEW_NONZERO_ALLOCATION_ERR: 142328b2fa4aSMatthew Knepley case MAT_UNUSED_NONZERO_LOCATION_ERR: 142412c028f9SKris Buschelman case MAT_KEEP_ZEROED_ROWS: 142512c028f9SKris Buschelman case MAT_NEW_NONZERO_LOCATION_ERR: 14264e0d8c25SBarry Smith ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 14274e0d8c25SBarry Smith ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr); 142812c028f9SKris Buschelman break; 142912c028f9SKris Buschelman case MAT_ROW_ORIENTED: 14304e0d8c25SBarry Smith a->roworiented = flg; 14314e0d8c25SBarry Smith ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 14324e0d8c25SBarry Smith ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr); 143312c028f9SKris Buschelman break; 14344e0d8c25SBarry Smith case MAT_NEW_DIAGONALS: 1435290bbb0aSBarry Smith ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr); 143612c028f9SKris Buschelman break; 143712c028f9SKris Buschelman case MAT_IGNORE_OFF_PROC_ENTRIES: 14384e0d8c25SBarry Smith a->donotstash = flg; 143912c028f9SKris Buschelman break; 144012c028f9SKris Buschelman case MAT_USE_HASH_TABLE: 14414e0d8c25SBarry Smith a->ht_flag = flg; 144212c028f9SKris Buschelman break; 144377e54ba9SKris Buschelman case MAT_SYMMETRIC: 144477e54ba9SKris Buschelman case MAT_STRUCTURALLY_SYMMETRIC: 14452188ac68SBarry Smith case MAT_HERMITIAN: 14462188ac68SBarry Smith case MAT_SYMMETRY_ETERNAL: 14474e0d8c25SBarry Smith ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 144877e54ba9SKris Buschelman break; 144912c028f9SKris Buschelman default: 1450ad86a440SBarry Smith SETERRQ1(PETSC_ERR_SUP,"unknown option %d",op); 1451d64ed03dSBarry Smith } 14523a40ed3dSBarry Smith PetscFunctionReturn(0); 145358667388SSatish Balay } 145458667388SSatish Balay 14554a2ae208SSatish Balay #undef __FUNCT__ 14564a2ae208SSatish Balay #define __FUNCT__ "MatTranspose_MPIBAIJ(" 1457fc4dec0aSBarry Smith PetscErrorCode MatTranspose_MPIBAIJ(Mat A,MatReuse reuse,Mat *matout) 14580ac07820SSatish Balay { 14590ac07820SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)A->data; 14600ac07820SSatish Balay Mat_SeqBAIJ *Aloc; 14610ac07820SSatish Balay Mat B; 1462dfbe8321SBarry Smith PetscErrorCode ierr; 1463d0f46423SBarry Smith PetscInt M=A->rmap->N,N=A->cmap->N,*ai,*aj,i,*rvals,j,k,col; 1464d0f46423SBarry Smith PetscInt bs=A->rmap->bs,mbs=baij->mbs; 14653eda8832SBarry Smith MatScalar *a; 14660ac07820SSatish Balay 1467d64ed03dSBarry Smith PetscFunctionBegin; 1468e9695a30SBarry Smith if (reuse == MAT_REUSE_MATRIX && A == *matout && M != N) SETERRQ(PETSC_ERR_ARG_SIZ,"Square matrix only for in-place"); 1469fc4dec0aSBarry Smith if (reuse == MAT_INITIAL_MATRIX || *matout == A) { 14707adad957SLisandro Dalcin ierr = MatCreate(((PetscObject)A)->comm,&B);CHKERRQ(ierr); 1471d0f46423SBarry Smith ierr = MatSetSizes(B,A->cmap->n,A->rmap->n,N,M);CHKERRQ(ierr); 14727adad957SLisandro Dalcin ierr = MatSetType(B,((PetscObject)A)->type_name);CHKERRQ(ierr); 1473d0f46423SBarry Smith ierr = MatMPIBAIJSetPreallocation(B,A->rmap->bs,0,PETSC_NULL,0,PETSC_NULL);CHKERRQ(ierr); 1474fc4dec0aSBarry Smith } else { 1475fc4dec0aSBarry Smith B = *matout; 1476fc4dec0aSBarry Smith } 14770ac07820SSatish Balay 14780ac07820SSatish Balay /* copy over the A part */ 14790ac07820SSatish Balay Aloc = (Mat_SeqBAIJ*)baij->A->data; 14800ac07820SSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 1481b24ad042SBarry Smith ierr = PetscMalloc(bs*sizeof(PetscInt),&rvals);CHKERRQ(ierr); 14820ac07820SSatish Balay 14830ac07820SSatish Balay for (i=0; i<mbs; i++) { 1484899cda47SBarry Smith rvals[0] = bs*(baij->rstartbs + i); 14850ac07820SSatish Balay for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; } 14860ac07820SSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 1487899cda47SBarry Smith col = (baij->cstartbs+aj[j])*bs; 14880ac07820SSatish Balay for (k=0; k<bs; k++) { 148997e5c40aSBarry Smith ierr = MatSetValues_MPIBAIJ(B,1,&col,bs,rvals,a,INSERT_VALUES);CHKERRQ(ierr); 14900ac07820SSatish Balay col++; a += bs; 14910ac07820SSatish Balay } 14920ac07820SSatish Balay } 14930ac07820SSatish Balay } 14940ac07820SSatish Balay /* copy over the B part */ 14950ac07820SSatish Balay Aloc = (Mat_SeqBAIJ*)baij->B->data; 14960ac07820SSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 14970ac07820SSatish Balay for (i=0; i<mbs; i++) { 1498899cda47SBarry Smith rvals[0] = bs*(baij->rstartbs + i); 14990ac07820SSatish Balay for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; } 15000ac07820SSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 15010ac07820SSatish Balay col = baij->garray[aj[j]]*bs; 15020ac07820SSatish Balay for (k=0; k<bs; k++) { 150397e5c40aSBarry Smith ierr = MatSetValues_MPIBAIJ(B,1,&col,bs,rvals,a,INSERT_VALUES);CHKERRQ(ierr); 15040ac07820SSatish Balay col++; a += bs; 15050ac07820SSatish Balay } 15060ac07820SSatish Balay } 15070ac07820SSatish Balay } 1508606d414cSSatish Balay ierr = PetscFree(rvals);CHKERRQ(ierr); 15090ac07820SSatish Balay ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 15100ac07820SSatish Balay ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 15110ac07820SSatish Balay 1512815cbec1SBarry Smith if (reuse == MAT_INITIAL_MATRIX || *matout != A) { 15130ac07820SSatish Balay *matout = B; 15140ac07820SSatish Balay } else { 1515273d9f13SBarry Smith ierr = MatHeaderCopy(A,B);CHKERRQ(ierr); 15160ac07820SSatish Balay } 15173a40ed3dSBarry Smith PetscFunctionReturn(0); 15180ac07820SSatish Balay } 15190e95ebc0SSatish Balay 15204a2ae208SSatish Balay #undef __FUNCT__ 15214a2ae208SSatish Balay #define __FUNCT__ "MatDiagonalScale_MPIBAIJ" 1522dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_MPIBAIJ(Mat mat,Vec ll,Vec rr) 15230e95ebc0SSatish Balay { 152436c4a09eSSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 152536c4a09eSSatish Balay Mat a = baij->A,b = baij->B; 1526dfbe8321SBarry Smith PetscErrorCode ierr; 1527b24ad042SBarry Smith PetscInt s1,s2,s3; 15280e95ebc0SSatish Balay 1529d64ed03dSBarry Smith PetscFunctionBegin; 153036c4a09eSSatish Balay ierr = MatGetLocalSize(mat,&s2,&s3);CHKERRQ(ierr); 153136c4a09eSSatish Balay if (rr) { 153236c4a09eSSatish Balay ierr = VecGetLocalSize(rr,&s1);CHKERRQ(ierr); 153329bbc08cSBarry Smith if (s1!=s3) SETERRQ(PETSC_ERR_ARG_SIZ,"right vector non-conforming local size"); 153436c4a09eSSatish Balay /* Overlap communication with computation. */ 1535ca9f406cSSatish Balay ierr = VecScatterBegin(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 153636c4a09eSSatish Balay } 15370e95ebc0SSatish Balay if (ll) { 15380e95ebc0SSatish Balay ierr = VecGetLocalSize(ll,&s1);CHKERRQ(ierr); 153929bbc08cSBarry Smith if (s1!=s2) SETERRQ(PETSC_ERR_ARG_SIZ,"left vector non-conforming local size"); 1540a21fb8cbSBarry Smith ierr = (*b->ops->diagonalscale)(b,ll,PETSC_NULL);CHKERRQ(ierr); 15410e95ebc0SSatish Balay } 154236c4a09eSSatish Balay /* scale the diagonal block */ 154336c4a09eSSatish Balay ierr = (*a->ops->diagonalscale)(a,ll,rr);CHKERRQ(ierr); 154436c4a09eSSatish Balay 154536c4a09eSSatish Balay if (rr) { 154636c4a09eSSatish Balay /* Do a scatter end and then right scale the off-diagonal block */ 1547ca9f406cSSatish Balay ierr = VecScatterEnd(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1548a21fb8cbSBarry Smith ierr = (*b->ops->diagonalscale)(b,PETSC_NULL,baij->lvec);CHKERRQ(ierr); 154936c4a09eSSatish Balay } 155036c4a09eSSatish Balay 15513a40ed3dSBarry Smith PetscFunctionReturn(0); 15520e95ebc0SSatish Balay } 15530e95ebc0SSatish Balay 15544a2ae208SSatish Balay #undef __FUNCT__ 15554a2ae208SSatish Balay #define __FUNCT__ "MatZeroRows_MPIBAIJ" 1556f4df32b1SMatthew Knepley PetscErrorCode MatZeroRows_MPIBAIJ(Mat A,PetscInt N,const PetscInt rows[],PetscScalar diag) 15570ac07820SSatish Balay { 15580ac07820SSatish Balay Mat_MPIBAIJ *l = (Mat_MPIBAIJ*)A->data; 15596849ba73SBarry Smith PetscErrorCode ierr; 1560b24ad042SBarry Smith PetscMPIInt imdex,size = l->size,n,rank = l->rank; 1561d0f46423SBarry Smith PetscInt i,*owners = A->rmap->range; 1562b24ad042SBarry Smith PetscInt *nprocs,j,idx,nsends,row; 1563b24ad042SBarry Smith PetscInt nmax,*svalues,*starts,*owner,nrecvs; 15647adad957SLisandro Dalcin PetscInt *rvalues,tag = ((PetscObject)A)->tag,count,base,slen,*source,lastidx = -1; 1565d0f46423SBarry Smith PetscInt *lens,*lrows,*values,rstart_bs=A->rmap->rstart; 15667adad957SLisandro Dalcin MPI_Comm comm = ((PetscObject)A)->comm; 15670ac07820SSatish Balay MPI_Request *send_waits,*recv_waits; 15680ac07820SSatish Balay MPI_Status recv_status,*send_status; 15696543fbbaSBarry Smith #if defined(PETSC_DEBUG) 15706543fbbaSBarry Smith PetscTruth found = PETSC_FALSE; 15716543fbbaSBarry Smith #endif 15720ac07820SSatish Balay 1573d64ed03dSBarry Smith PetscFunctionBegin; 15740ac07820SSatish Balay /* first count number of contributors to each processor */ 1575b24ad042SBarry Smith ierr = PetscMalloc(2*size*sizeof(PetscInt),&nprocs);CHKERRQ(ierr); 1576b24ad042SBarry Smith ierr = PetscMemzero(nprocs,2*size*sizeof(PetscInt));CHKERRQ(ierr); 1577b24ad042SBarry Smith ierr = PetscMalloc((N+1)*sizeof(PetscInt),&owner);CHKERRQ(ierr); /* see note*/ 15786543fbbaSBarry Smith j = 0; 15790ac07820SSatish Balay for (i=0; i<N; i++) { 15806543fbbaSBarry Smith if (lastidx > (idx = rows[i])) j = 0; 15816543fbbaSBarry Smith lastidx = idx; 15826543fbbaSBarry Smith for (; j<size; j++) { 1583357c27ecSBarry Smith if (idx >= owners[j] && idx < owners[j+1]) { 15846543fbbaSBarry Smith nprocs[2*j]++; 15856543fbbaSBarry Smith nprocs[2*j+1] = 1; 15866543fbbaSBarry Smith owner[i] = j; 15876543fbbaSBarry Smith #if defined(PETSC_DEBUG) 15886543fbbaSBarry Smith found = PETSC_TRUE; 15896543fbbaSBarry Smith #endif 15906543fbbaSBarry Smith break; 15910ac07820SSatish Balay } 15920ac07820SSatish Balay } 15936543fbbaSBarry Smith #if defined(PETSC_DEBUG) 159429bbc08cSBarry Smith if (!found) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Index out of range"); 15956543fbbaSBarry Smith found = PETSC_FALSE; 15966543fbbaSBarry Smith #endif 15970ac07820SSatish Balay } 1598c1dc657dSBarry Smith nsends = 0; for (i=0; i<size; i++) { nsends += nprocs[2*i+1];} 15990ac07820SSatish Balay 16000ac07820SSatish Balay /* inform other processors of number of messages and max length*/ 1601c1dc657dSBarry Smith ierr = PetscMaxSum(comm,nprocs,&nmax,&nrecvs);CHKERRQ(ierr); 16020ac07820SSatish Balay 16030ac07820SSatish Balay /* post receives: */ 1604b24ad042SBarry Smith ierr = PetscMalloc((nrecvs+1)*(nmax+1)*sizeof(PetscInt),&rvalues);CHKERRQ(ierr); 1605b0a32e0cSBarry Smith ierr = PetscMalloc((nrecvs+1)*sizeof(MPI_Request),&recv_waits);CHKERRQ(ierr); 16060ac07820SSatish Balay for (i=0; i<nrecvs; i++) { 1607b24ad042SBarry Smith ierr = MPI_Irecv(rvalues+nmax*i,nmax,MPIU_INT,MPI_ANY_SOURCE,tag,comm,recv_waits+i);CHKERRQ(ierr); 16080ac07820SSatish Balay } 16090ac07820SSatish Balay 16100ac07820SSatish Balay /* do sends: 16110ac07820SSatish Balay 1) starts[i] gives the starting index in svalues for stuff going to 16120ac07820SSatish Balay the ith processor 16130ac07820SSatish Balay */ 1614b24ad042SBarry Smith ierr = PetscMalloc((N+1)*sizeof(PetscInt),&svalues);CHKERRQ(ierr); 1615b0a32e0cSBarry Smith ierr = PetscMalloc((nsends+1)*sizeof(MPI_Request),&send_waits);CHKERRQ(ierr); 1616b24ad042SBarry Smith ierr = PetscMalloc((size+1)*sizeof(PetscInt),&starts);CHKERRQ(ierr); 16170ac07820SSatish Balay starts[0] = 0; 1618c1dc657dSBarry Smith for (i=1; i<size; i++) { starts[i] = starts[i-1] + nprocs[2*i-2];} 16190ac07820SSatish Balay for (i=0; i<N; i++) { 16200ac07820SSatish Balay svalues[starts[owner[i]]++] = rows[i]; 16210ac07820SSatish Balay } 16220ac07820SSatish Balay 16230ac07820SSatish Balay starts[0] = 0; 1624c1dc657dSBarry Smith for (i=1; i<size+1; i++) { starts[i] = starts[i-1] + nprocs[2*i-2];} 16250ac07820SSatish Balay count = 0; 16260ac07820SSatish Balay for (i=0; i<size; i++) { 1627c1dc657dSBarry Smith if (nprocs[2*i+1]) { 1628b24ad042SBarry Smith ierr = MPI_Isend(svalues+starts[i],nprocs[2*i],MPIU_INT,i,tag,comm,send_waits+count++);CHKERRQ(ierr); 16290ac07820SSatish Balay } 16300ac07820SSatish Balay } 1631606d414cSSatish Balay ierr = PetscFree(starts);CHKERRQ(ierr); 16320ac07820SSatish Balay 1633357c27ecSBarry Smith base = owners[rank]; 16340ac07820SSatish Balay 16350ac07820SSatish Balay /* wait on receives */ 1636b24ad042SBarry Smith ierr = PetscMalloc(2*(nrecvs+1)*sizeof(PetscInt),&lens);CHKERRQ(ierr); 16370ac07820SSatish Balay source = lens + nrecvs; 16380ac07820SSatish Balay count = nrecvs; slen = 0; 16390ac07820SSatish Balay while (count) { 1640ca161407SBarry Smith ierr = MPI_Waitany(nrecvs,recv_waits,&imdex,&recv_status);CHKERRQ(ierr); 16410ac07820SSatish Balay /* unpack receives into our local space */ 1642b24ad042SBarry Smith ierr = MPI_Get_count(&recv_status,MPIU_INT,&n);CHKERRQ(ierr); 16430ac07820SSatish Balay source[imdex] = recv_status.MPI_SOURCE; 16440ac07820SSatish Balay lens[imdex] = n; 16450ac07820SSatish Balay slen += n; 16460ac07820SSatish Balay count--; 16470ac07820SSatish Balay } 1648606d414cSSatish Balay ierr = PetscFree(recv_waits);CHKERRQ(ierr); 16490ac07820SSatish Balay 16500ac07820SSatish Balay /* move the data into the send scatter */ 1651b24ad042SBarry Smith ierr = PetscMalloc((slen+1)*sizeof(PetscInt),&lrows);CHKERRQ(ierr); 16520ac07820SSatish Balay count = 0; 16530ac07820SSatish Balay for (i=0; i<nrecvs; i++) { 16540ac07820SSatish Balay values = rvalues + i*nmax; 16550ac07820SSatish Balay for (j=0; j<lens[i]; j++) { 16560ac07820SSatish Balay lrows[count++] = values[j] - base; 16570ac07820SSatish Balay } 16580ac07820SSatish Balay } 1659606d414cSSatish Balay ierr = PetscFree(rvalues);CHKERRQ(ierr); 1660606d414cSSatish Balay ierr = PetscFree(lens);CHKERRQ(ierr); 1661606d414cSSatish Balay ierr = PetscFree(owner);CHKERRQ(ierr); 1662606d414cSSatish Balay ierr = PetscFree(nprocs);CHKERRQ(ierr); 16630ac07820SSatish Balay 16640ac07820SSatish Balay /* actually zap the local rows */ 166572dacd9aSBarry Smith /* 166672dacd9aSBarry Smith Zero the required rows. If the "diagonal block" of the matrix 1667a8c7a070SBarry Smith is square and the user wishes to set the diagonal we use separate 166872dacd9aSBarry Smith code so that MatSetValues() is not called for each diagonal allocating 166972dacd9aSBarry Smith new memory, thus calling lots of mallocs and slowing things down. 167072dacd9aSBarry Smith 1671f4df32b1SMatthew Knepley Contributed by: Matthew Knepley 167272dacd9aSBarry Smith */ 16739c957beeSSatish Balay /* must zero l->B before l->A because the (diag) case below may put values into l->B*/ 1674f4df32b1SMatthew Knepley ierr = MatZeroRows_SeqBAIJ(l->B,slen,lrows,0.0);CHKERRQ(ierr); 1675d0f46423SBarry Smith if ((diag != 0.0) && (l->A->rmap->N == l->A->cmap->N)) { 1676f4df32b1SMatthew Knepley ierr = MatZeroRows_SeqBAIJ(l->A,slen,lrows,diag);CHKERRQ(ierr); 1677f4df32b1SMatthew Knepley } else if (diag != 0.0) { 1678f4df32b1SMatthew Knepley ierr = MatZeroRows_SeqBAIJ(l->A,slen,lrows,0.0);CHKERRQ(ierr); 1679fa46199cSSatish Balay if (((Mat_SeqBAIJ*)l->A->data)->nonew) { 168029bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"MatZeroRows() on rectangular matrices cannot be used with the Mat options \n\ 1681512a5fc5SBarry Smith MAT_NEW_NONZERO_LOCATIONS,MAT_NEW_NONZERO_LOCATION_ERR,MAT_NEW_NONZERO_ALLOCATION_ERR"); 16826525c446SSatish Balay } 1683a07cd24cSSatish Balay for (i=0; i<slen; i++) { 1684a07cd24cSSatish Balay row = lrows[i] + rstart_bs; 1685f4df32b1SMatthew Knepley ierr = MatSetValues(A,1,&row,1,&row,&diag,INSERT_VALUES);CHKERRQ(ierr); 1686a07cd24cSSatish Balay } 1687a07cd24cSSatish Balay ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 1688a07cd24cSSatish Balay ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 16899c957beeSSatish Balay } else { 1690f4df32b1SMatthew Knepley ierr = MatZeroRows_SeqBAIJ(l->A,slen,lrows,0.0);CHKERRQ(ierr); 1691a07cd24cSSatish Balay } 16929c957beeSSatish Balay 1693606d414cSSatish Balay ierr = PetscFree(lrows);CHKERRQ(ierr); 1694a07cd24cSSatish Balay 16950ac07820SSatish Balay /* wait on sends */ 16960ac07820SSatish Balay if (nsends) { 169782502324SSatish Balay ierr = PetscMalloc(nsends*sizeof(MPI_Status),&send_status);CHKERRQ(ierr); 1698ca161407SBarry Smith ierr = MPI_Waitall(nsends,send_waits,send_status);CHKERRQ(ierr); 1699606d414cSSatish Balay ierr = PetscFree(send_status);CHKERRQ(ierr); 17000ac07820SSatish Balay } 1701606d414cSSatish Balay ierr = PetscFree(send_waits);CHKERRQ(ierr); 1702606d414cSSatish Balay ierr = PetscFree(svalues);CHKERRQ(ierr); 17030ac07820SSatish Balay 17043a40ed3dSBarry Smith PetscFunctionReturn(0); 17050ac07820SSatish Balay } 170672dacd9aSBarry Smith 17074a2ae208SSatish Balay #undef __FUNCT__ 17084a2ae208SSatish Balay #define __FUNCT__ "MatSetUnfactored_MPIBAIJ" 1709dfbe8321SBarry Smith PetscErrorCode MatSetUnfactored_MPIBAIJ(Mat A) 1710bb5a7306SBarry Smith { 1711bb5a7306SBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1712dfbe8321SBarry Smith PetscErrorCode ierr; 1713d64ed03dSBarry Smith 1714d64ed03dSBarry Smith PetscFunctionBegin; 1715bb5a7306SBarry Smith ierr = MatSetUnfactored(a->A);CHKERRQ(ierr); 17163a40ed3dSBarry Smith PetscFunctionReturn(0); 1717bb5a7306SBarry Smith } 1718bb5a7306SBarry Smith 17196849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIBAIJ(Mat,MatDuplicateOption,Mat *); 17200ac07820SSatish Balay 17214a2ae208SSatish Balay #undef __FUNCT__ 17224a2ae208SSatish Balay #define __FUNCT__ "MatEqual_MPIBAIJ" 1723dfbe8321SBarry Smith PetscErrorCode MatEqual_MPIBAIJ(Mat A,Mat B,PetscTruth *flag) 17247fc3c18eSBarry Smith { 17257fc3c18eSBarry Smith Mat_MPIBAIJ *matB = (Mat_MPIBAIJ*)B->data,*matA = (Mat_MPIBAIJ*)A->data; 17267fc3c18eSBarry Smith Mat a,b,c,d; 17277fc3c18eSBarry Smith PetscTruth flg; 1728dfbe8321SBarry Smith PetscErrorCode ierr; 17297fc3c18eSBarry Smith 17307fc3c18eSBarry Smith PetscFunctionBegin; 17317fc3c18eSBarry Smith a = matA->A; b = matA->B; 17327fc3c18eSBarry Smith c = matB->A; d = matB->B; 17337fc3c18eSBarry Smith 17347fc3c18eSBarry Smith ierr = MatEqual(a,c,&flg);CHKERRQ(ierr); 1735abc0a331SBarry Smith if (flg) { 17367fc3c18eSBarry Smith ierr = MatEqual(b,d,&flg);CHKERRQ(ierr); 17377fc3c18eSBarry Smith } 17387adad957SLisandro Dalcin ierr = MPI_Allreduce(&flg,flag,1,MPI_INT,MPI_LAND,((PetscObject)A)->comm);CHKERRQ(ierr); 17397fc3c18eSBarry Smith PetscFunctionReturn(0); 17407fc3c18eSBarry Smith } 17417fc3c18eSBarry Smith 17423c896bc6SHong Zhang #undef __FUNCT__ 17433c896bc6SHong Zhang #define __FUNCT__ "MatCopy_MPIBAIJ" 17443c896bc6SHong Zhang PetscErrorCode MatCopy_MPIBAIJ(Mat A,Mat B,MatStructure str) 17453c896bc6SHong Zhang { 17463c896bc6SHong Zhang PetscErrorCode ierr; 17473c896bc6SHong Zhang Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 17483c896bc6SHong Zhang Mat_MPIBAIJ *b = (Mat_MPIBAIJ *)B->data; 17493c896bc6SHong Zhang 17503c896bc6SHong Zhang PetscFunctionBegin; 17513c896bc6SHong Zhang /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */ 17523c896bc6SHong Zhang if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) { 17533c896bc6SHong Zhang ierr = MatCopy_Basic(A,B,str);CHKERRQ(ierr); 17543c896bc6SHong Zhang } else { 17553c896bc6SHong Zhang ierr = MatCopy(a->A,b->A,str);CHKERRQ(ierr); 17563c896bc6SHong Zhang ierr = MatCopy(a->B,b->B,str);CHKERRQ(ierr); 17573c896bc6SHong Zhang } 17583c896bc6SHong Zhang PetscFunctionReturn(0); 17593c896bc6SHong Zhang } 1760273d9f13SBarry Smith 17614a2ae208SSatish Balay #undef __FUNCT__ 17624a2ae208SSatish Balay #define __FUNCT__ "MatSetUpPreallocation_MPIBAIJ" 1763dfbe8321SBarry Smith PetscErrorCode MatSetUpPreallocation_MPIBAIJ(Mat A) 1764273d9f13SBarry Smith { 1765dfbe8321SBarry Smith PetscErrorCode ierr; 1766273d9f13SBarry Smith 1767273d9f13SBarry Smith PetscFunctionBegin; 1768db4efbfdSBarry Smith ierr = MatMPIBAIJSetPreallocation(A,-PetscMax(A->rmap->bs,1),PETSC_DEFAULT,0,PETSC_DEFAULT,0);CHKERRQ(ierr); 1769273d9f13SBarry Smith PetscFunctionReturn(0); 1770273d9f13SBarry Smith } 1771273d9f13SBarry Smith 17724fe895cdSHong Zhang #include "petscblaslapack.h" 17734fe895cdSHong Zhang #undef __FUNCT__ 17744fe895cdSHong Zhang #define __FUNCT__ "MatAXPY_MPIBAIJ" 17754fe895cdSHong Zhang PetscErrorCode MatAXPY_MPIBAIJ(Mat Y,PetscScalar a,Mat X,MatStructure str) 17764fe895cdSHong Zhang { 17774fe895cdSHong Zhang PetscErrorCode ierr; 17784fe895cdSHong Zhang Mat_MPIBAIJ *xx=(Mat_MPIBAIJ *)X->data,*yy=(Mat_MPIBAIJ *)Y->data; 17794fe895cdSHong Zhang PetscBLASInt bnz,one=1; 17804fe895cdSHong Zhang Mat_SeqBAIJ *x,*y; 17814fe895cdSHong Zhang 17824fe895cdSHong Zhang PetscFunctionBegin; 17834fe895cdSHong Zhang if (str == SAME_NONZERO_PATTERN) { 17844fe895cdSHong Zhang PetscScalar alpha = a; 17854fe895cdSHong Zhang x = (Mat_SeqBAIJ *)xx->A->data; 17864fe895cdSHong Zhang y = (Mat_SeqBAIJ *)yy->A->data; 17870805154bSBarry Smith bnz = PetscBLASIntCast(x->nz); 17884fe895cdSHong Zhang BLASaxpy_(&bnz,&alpha,x->a,&one,y->a,&one); 17894fe895cdSHong Zhang x = (Mat_SeqBAIJ *)xx->B->data; 17904fe895cdSHong Zhang y = (Mat_SeqBAIJ *)yy->B->data; 17910805154bSBarry Smith bnz = PetscBLASIntCast(x->nz); 17924fe895cdSHong Zhang BLASaxpy_(&bnz,&alpha,x->a,&one,y->a,&one); 17934fe895cdSHong Zhang } else { 17944fe895cdSHong Zhang ierr = MatAXPY_Basic(Y,a,X,str);CHKERRQ(ierr); 17954fe895cdSHong Zhang } 17964fe895cdSHong Zhang PetscFunctionReturn(0); 17974fe895cdSHong Zhang } 17984fe895cdSHong Zhang 179999cafbc1SBarry Smith #undef __FUNCT__ 180099cafbc1SBarry Smith #define __FUNCT__ "MatRealPart_MPIBAIJ" 180199cafbc1SBarry Smith PetscErrorCode MatRealPart_MPIBAIJ(Mat A) 180299cafbc1SBarry Smith { 180399cafbc1SBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 180499cafbc1SBarry Smith PetscErrorCode ierr; 180599cafbc1SBarry Smith 180699cafbc1SBarry Smith PetscFunctionBegin; 180799cafbc1SBarry Smith ierr = MatRealPart(a->A);CHKERRQ(ierr); 180899cafbc1SBarry Smith ierr = MatRealPart(a->B);CHKERRQ(ierr); 180999cafbc1SBarry Smith PetscFunctionReturn(0); 181099cafbc1SBarry Smith } 181199cafbc1SBarry Smith 181299cafbc1SBarry Smith #undef __FUNCT__ 181399cafbc1SBarry Smith #define __FUNCT__ "MatImaginaryPart_MPIBAIJ" 181499cafbc1SBarry Smith PetscErrorCode MatImaginaryPart_MPIBAIJ(Mat A) 181599cafbc1SBarry Smith { 181699cafbc1SBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 181799cafbc1SBarry Smith PetscErrorCode ierr; 181899cafbc1SBarry Smith 181999cafbc1SBarry Smith PetscFunctionBegin; 182099cafbc1SBarry Smith ierr = MatImaginaryPart(a->A);CHKERRQ(ierr); 182199cafbc1SBarry Smith ierr = MatImaginaryPart(a->B);CHKERRQ(ierr); 182299cafbc1SBarry Smith PetscFunctionReturn(0); 182399cafbc1SBarry Smith } 182499cafbc1SBarry Smith 182582094794SBarry Smith #undef __FUNCT__ 182682094794SBarry Smith #define __FUNCT__ "MatGetSubMatrix_MPIBAIJ" 1827*4aa3045dSJed Brown PetscErrorCode MatGetSubMatrix_MPIBAIJ(Mat mat,IS isrow,IS iscol,MatReuse call,Mat *newmat) 1828*4aa3045dSJed Brown { 1829*4aa3045dSJed Brown PetscErrorCode ierr; 1830*4aa3045dSJed Brown IS iscol_local; 1831*4aa3045dSJed Brown PetscInt csize; 1832*4aa3045dSJed Brown 1833*4aa3045dSJed Brown PetscFunctionBegin; 1834*4aa3045dSJed Brown ierr = ISGetLocalSize(iscol,&csize);CHKERRQ(ierr); 1835*4aa3045dSJed Brown ierr = ISAllGather(iscol,&iscol_local);CHKERRQ(ierr); 1836*4aa3045dSJed Brown ierr = MatGetSubMatrix_MPIBAIJ_Private(mat,isrow,iscol_local,csize,call,newmat);CHKERRQ(ierr); 1837*4aa3045dSJed Brown ierr = ISDestroy(iscol_local);CHKERRQ(ierr); 1838*4aa3045dSJed Brown PetscFunctionReturn(0); 1839*4aa3045dSJed Brown } 1840*4aa3045dSJed Brown 1841*4aa3045dSJed Brown #undef __FUNCT__ 1842*4aa3045dSJed Brown #define __FUNCT__ "MatGetSubMatrix_MPIBAIJ" 184382094794SBarry Smith /* 184482094794SBarry Smith Not great since it makes two copies of the submatrix, first an SeqBAIJ 184582094794SBarry Smith in local and then by concatenating the local matrices the end result. 184682094794SBarry Smith Writing it directly would be much like MatGetSubMatrices_MPIBAIJ() 184782094794SBarry Smith */ 1848*4aa3045dSJed Brown PetscErrorCode MatGetSubMatrix_MPIBAIJ_Private(Mat mat,IS isrow,IS iscol,PetscInt csize,MatReuse call,Mat *newmat) 184982094794SBarry Smith { 185082094794SBarry Smith PetscErrorCode ierr; 185182094794SBarry Smith PetscMPIInt rank,size; 185282094794SBarry Smith PetscInt i,m,n,rstart,row,rend,nz,*cwork,j,bs; 185382094794SBarry Smith PetscInt *ii,*jj,nlocal,*dlens,*olens,dlen,olen,jend,mglobal; 185482094794SBarry Smith Mat *local,M,Mreuse; 185582094794SBarry Smith MatScalar *vwork,*aa; 185682094794SBarry Smith MPI_Comm comm = ((PetscObject)mat)->comm; 185782094794SBarry Smith Mat_SeqBAIJ *aij; 185882094794SBarry Smith 185982094794SBarry Smith 186082094794SBarry Smith PetscFunctionBegin; 186182094794SBarry Smith ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 186282094794SBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 186382094794SBarry Smith 186482094794SBarry Smith if (call == MAT_REUSE_MATRIX) { 186582094794SBarry Smith ierr = PetscObjectQuery((PetscObject)*newmat,"SubMatrix",(PetscObject *)&Mreuse);CHKERRQ(ierr); 186682094794SBarry Smith if (!Mreuse) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Submatrix passed in was not used before, cannot reuse"); 186782094794SBarry Smith local = &Mreuse; 186882094794SBarry Smith ierr = MatGetSubMatrices(mat,1,&isrow,&iscol,MAT_REUSE_MATRIX,&local);CHKERRQ(ierr); 186982094794SBarry Smith } else { 187082094794SBarry Smith ierr = MatGetSubMatrices(mat,1,&isrow,&iscol,MAT_INITIAL_MATRIX,&local);CHKERRQ(ierr); 187182094794SBarry Smith Mreuse = *local; 187282094794SBarry Smith ierr = PetscFree(local);CHKERRQ(ierr); 187382094794SBarry Smith } 187482094794SBarry Smith 187582094794SBarry Smith /* 187682094794SBarry Smith m - number of local rows 187782094794SBarry Smith n - number of columns (same on all processors) 187882094794SBarry Smith rstart - first row in new global matrix generated 187982094794SBarry Smith */ 188082094794SBarry Smith ierr = MatGetBlockSize(mat,&bs);CHKERRQ(ierr); 188182094794SBarry Smith ierr = MatGetSize(Mreuse,&m,&n);CHKERRQ(ierr); 188282094794SBarry Smith m = m/bs; 188382094794SBarry Smith n = n/bs; 188482094794SBarry Smith 188582094794SBarry Smith if (call == MAT_INITIAL_MATRIX) { 188682094794SBarry Smith aij = (Mat_SeqBAIJ*)(Mreuse)->data; 188782094794SBarry Smith ii = aij->i; 188882094794SBarry Smith jj = aij->j; 188982094794SBarry Smith 189082094794SBarry Smith /* 189182094794SBarry Smith Determine the number of non-zeros in the diagonal and off-diagonal 189282094794SBarry Smith portions of the matrix in order to do correct preallocation 189382094794SBarry Smith */ 189482094794SBarry Smith 189582094794SBarry Smith /* first get start and end of "diagonal" columns */ 189682094794SBarry Smith if (csize == PETSC_DECIDE) { 189782094794SBarry Smith ierr = ISGetSize(isrow,&mglobal);CHKERRQ(ierr); 189882094794SBarry Smith if (mglobal == n*bs) { /* square matrix */ 189982094794SBarry Smith nlocal = m; 190082094794SBarry Smith } else { 190182094794SBarry Smith nlocal = n/size + ((n % size) > rank); 190282094794SBarry Smith } 190382094794SBarry Smith } else { 190482094794SBarry Smith nlocal = csize/bs; 190582094794SBarry Smith } 190682094794SBarry Smith ierr = MPI_Scan(&nlocal,&rend,1,MPIU_INT,MPI_SUM,comm);CHKERRQ(ierr); 190782094794SBarry Smith rstart = rend - nlocal; 190882094794SBarry Smith if (rank == size - 1 && rend != n) { 190982094794SBarry Smith SETERRQ2(PETSC_ERR_ARG_SIZ,"Local column sizes %D do not add up to total number of columns %D",rend,n); 191082094794SBarry Smith } 191182094794SBarry Smith 191282094794SBarry Smith /* next, compute all the lengths */ 191382094794SBarry Smith ierr = PetscMalloc((2*m+1)*sizeof(PetscInt),&dlens);CHKERRQ(ierr); 191482094794SBarry Smith olens = dlens + m; 191582094794SBarry Smith for (i=0; i<m; i++) { 191682094794SBarry Smith jend = ii[i+1] - ii[i]; 191782094794SBarry Smith olen = 0; 191882094794SBarry Smith dlen = 0; 191982094794SBarry Smith for (j=0; j<jend; j++) { 192082094794SBarry Smith if (*jj < rstart || *jj >= rend) olen++; 192182094794SBarry Smith else dlen++; 192282094794SBarry Smith jj++; 192382094794SBarry Smith } 192482094794SBarry Smith olens[i] = olen; 192582094794SBarry Smith dlens[i] = dlen; 192682094794SBarry Smith } 192782094794SBarry Smith ierr = MatCreate(comm,&M);CHKERRQ(ierr); 192882094794SBarry Smith ierr = MatSetSizes(M,bs*m,bs*nlocal,PETSC_DECIDE,bs*n);CHKERRQ(ierr); 192982094794SBarry Smith ierr = MatSetType(M,((PetscObject)mat)->type_name);CHKERRQ(ierr); 193082094794SBarry Smith ierr = MatMPIBAIJSetPreallocation(M,bs,0,dlens,0,olens);CHKERRQ(ierr); 193182094794SBarry Smith ierr = PetscFree(dlens);CHKERRQ(ierr); 193282094794SBarry Smith } else { 193382094794SBarry Smith PetscInt ml,nl; 193482094794SBarry Smith 193582094794SBarry Smith M = *newmat; 193682094794SBarry Smith ierr = MatGetLocalSize(M,&ml,&nl);CHKERRQ(ierr); 193782094794SBarry Smith if (ml != m) SETERRQ(PETSC_ERR_ARG_SIZ,"Previous matrix must be same size/layout as request"); 193882094794SBarry Smith ierr = MatZeroEntries(M);CHKERRQ(ierr); 193982094794SBarry Smith /* 194082094794SBarry Smith The next two lines are needed so we may call MatSetValues_MPIAIJ() below directly, 194182094794SBarry Smith rather than the slower MatSetValues(). 194282094794SBarry Smith */ 194382094794SBarry Smith M->was_assembled = PETSC_TRUE; 194482094794SBarry Smith M->assembled = PETSC_FALSE; 194582094794SBarry Smith } 194682094794SBarry Smith ierr = MatSetOption(M,MAT_ROW_ORIENTED,PETSC_FALSE);CHKERRQ(ierr); 194782094794SBarry Smith ierr = MatGetOwnershipRange(M,&rstart,&rend);CHKERRQ(ierr); 194882094794SBarry Smith aij = (Mat_SeqBAIJ*)(Mreuse)->data; 194982094794SBarry Smith ii = aij->i; 195082094794SBarry Smith jj = aij->j; 195182094794SBarry Smith aa = aij->a; 195282094794SBarry Smith for (i=0; i<m; i++) { 195382094794SBarry Smith row = rstart/bs + i; 195482094794SBarry Smith nz = ii[i+1] - ii[i]; 195582094794SBarry Smith cwork = jj; jj += nz; 195682094794SBarry Smith vwork = aa; aa += nz; 195782094794SBarry Smith ierr = MatSetValuesBlocked_MPIBAIJ(M,1,&row,nz,cwork,vwork,INSERT_VALUES);CHKERRQ(ierr); 195882094794SBarry Smith } 195982094794SBarry Smith 196082094794SBarry Smith ierr = MatAssemblyBegin(M,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 196182094794SBarry Smith ierr = MatAssemblyEnd(M,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 196282094794SBarry Smith *newmat = M; 196382094794SBarry Smith 196482094794SBarry Smith /* save submatrix used in processor for next request */ 196582094794SBarry Smith if (call == MAT_INITIAL_MATRIX) { 196682094794SBarry Smith ierr = PetscObjectCompose((PetscObject)M,"SubMatrix",(PetscObject)Mreuse);CHKERRQ(ierr); 196782094794SBarry Smith ierr = PetscObjectDereference((PetscObject)Mreuse);CHKERRQ(ierr); 196882094794SBarry Smith } 196982094794SBarry Smith 197082094794SBarry Smith PetscFunctionReturn(0); 197182094794SBarry Smith } 197282094794SBarry Smith 197382094794SBarry Smith #undef __FUNCT__ 197482094794SBarry Smith #define __FUNCT__ "MatPermute_MPIBAIJ" 197582094794SBarry Smith PetscErrorCode MatPermute_MPIBAIJ(Mat A,IS rowp,IS colp,Mat *B) 197682094794SBarry Smith { 197782094794SBarry Smith MPI_Comm comm,pcomm; 197882094794SBarry Smith PetscInt first,local_size,nrows; 197982094794SBarry Smith const PetscInt *rows; 1980dbf0e21dSBarry Smith PetscMPIInt size; 198182094794SBarry Smith IS crowp,growp,irowp,lrowp,lcolp,icolp; 198282094794SBarry Smith PetscErrorCode ierr; 198382094794SBarry Smith 198482094794SBarry Smith PetscFunctionBegin; 198582094794SBarry Smith ierr = PetscObjectGetComm((PetscObject)A,&comm);CHKERRQ(ierr); 198682094794SBarry Smith /* make a collective version of 'rowp' */ 198782094794SBarry Smith ierr = PetscObjectGetComm((PetscObject)rowp,&pcomm);CHKERRQ(ierr); 198882094794SBarry Smith if (pcomm==comm) { 198982094794SBarry Smith crowp = rowp; 199082094794SBarry Smith } else { 199182094794SBarry Smith ierr = ISGetSize(rowp,&nrows);CHKERRQ(ierr); 199282094794SBarry Smith ierr = ISGetIndices(rowp,&rows);CHKERRQ(ierr); 199382094794SBarry Smith ierr = ISCreateGeneral(comm,nrows,rows,&crowp);CHKERRQ(ierr); 199482094794SBarry Smith ierr = ISRestoreIndices(rowp,&rows);CHKERRQ(ierr); 199582094794SBarry Smith } 199682094794SBarry Smith /* collect the global row permutation and invert it */ 199782094794SBarry Smith ierr = ISAllGather(crowp,&growp);CHKERRQ(ierr); 199882094794SBarry Smith ierr = ISSetPermutation(growp);CHKERRQ(ierr); 199982094794SBarry Smith if (pcomm!=comm) { 200082094794SBarry Smith ierr = ISDestroy(crowp);CHKERRQ(ierr); 200182094794SBarry Smith } 200282094794SBarry Smith ierr = ISInvertPermutation(growp,PETSC_DECIDE,&irowp);CHKERRQ(ierr); 200382094794SBarry Smith /* get the local target indices */ 200482094794SBarry Smith ierr = MatGetOwnershipRange(A,&first,PETSC_NULL);CHKERRQ(ierr); 200582094794SBarry Smith ierr = MatGetLocalSize(A,&local_size,PETSC_NULL);CHKERRQ(ierr); 200682094794SBarry Smith ierr = ISGetIndices(irowp,&rows);CHKERRQ(ierr); 200782094794SBarry Smith ierr = ISCreateGeneral(MPI_COMM_SELF,local_size,rows+first,&lrowp);CHKERRQ(ierr); 200882094794SBarry Smith ierr = ISRestoreIndices(irowp,&rows);CHKERRQ(ierr); 200982094794SBarry Smith ierr = ISDestroy(irowp);CHKERRQ(ierr); 201082094794SBarry Smith /* the column permutation is so much easier; 201182094794SBarry Smith make a local version of 'colp' and invert it */ 201282094794SBarry Smith ierr = PetscObjectGetComm((PetscObject)colp,&pcomm);CHKERRQ(ierr); 2013dbf0e21dSBarry Smith ierr = MPI_Comm_size(pcomm,&size);CHKERRQ(ierr); 2014dbf0e21dSBarry Smith if (size==1) { 201582094794SBarry Smith lcolp = colp; 201682094794SBarry Smith } else { 201782094794SBarry Smith ierr = ISGetSize(colp,&nrows);CHKERRQ(ierr); 201882094794SBarry Smith ierr = ISGetIndices(colp,&rows);CHKERRQ(ierr); 201982094794SBarry Smith ierr = ISCreateGeneral(MPI_COMM_SELF,nrows,rows,&lcolp);CHKERRQ(ierr); 202082094794SBarry Smith } 2021dbf0e21dSBarry Smith ierr = ISSetPermutation(lcolp);CHKERRQ(ierr); 202282094794SBarry Smith ierr = ISInvertPermutation(lcolp,PETSC_DECIDE,&icolp);CHKERRQ(ierr); 2023*4aa3045dSJed Brown ierr = ISSetPermutation(icolp);CHKERRQ(ierr); 2024dbf0e21dSBarry Smith if (size>1) { 202582094794SBarry Smith ierr = ISRestoreIndices(colp,&rows);CHKERRQ(ierr); 202682094794SBarry Smith ierr = ISDestroy(lcolp);CHKERRQ(ierr); 202782094794SBarry Smith } 202882094794SBarry Smith /* now we just get the submatrix */ 2029*4aa3045dSJed Brown ierr = MatGetSubMatrix_MPIBAIJ_Private(A,lrowp,icolp,local_size,MAT_INITIAL_MATRIX,B);CHKERRQ(ierr); 203082094794SBarry Smith /* clean up */ 203182094794SBarry Smith ierr = ISDestroy(lrowp);CHKERRQ(ierr); 203282094794SBarry Smith ierr = ISDestroy(icolp);CHKERRQ(ierr); 203382094794SBarry Smith PetscFunctionReturn(0); 203482094794SBarry Smith } 203582094794SBarry Smith 20368c7482ecSBarry Smith #undef __FUNCT__ 20378c7482ecSBarry Smith #define __FUNCT__ "MatGetGhosts_MPIBAIJ" 20388c7482ecSBarry Smith PetscErrorCode PETSCMAT_DLLEXPORT MatGetGhosts_MPIBAIJ(Mat mat,PetscInt *nghosts,const PetscInt *ghosts[]) 20398c7482ecSBarry Smith { 20408c7482ecSBarry Smith Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*) mat->data; 20418c7482ecSBarry Smith Mat_SeqBAIJ *B = (Mat_SeqBAIJ*)baij->B->data; 20428c7482ecSBarry Smith 20438c7482ecSBarry Smith PetscFunctionBegin; 20448c7482ecSBarry Smith if (nghosts) { *nghosts = B->nbs;} 20458c7482ecSBarry Smith if (ghosts) {*ghosts = baij->garray;} 20468c7482ecSBarry Smith PetscFunctionReturn(0); 20478c7482ecSBarry Smith } 20488c7482ecSBarry Smith 20498c7482ecSBarry Smith 205079bdfe76SSatish Balay /* -------------------------------------------------------------------*/ 2051cc2dc46cSBarry Smith static struct _MatOps MatOps_Values = { 2052cc2dc46cSBarry Smith MatSetValues_MPIBAIJ, 2053cc2dc46cSBarry Smith MatGetRow_MPIBAIJ, 2054cc2dc46cSBarry Smith MatRestoreRow_MPIBAIJ, 2055cc2dc46cSBarry Smith MatMult_MPIBAIJ, 205697304618SKris Buschelman /* 4*/ MatMultAdd_MPIBAIJ, 20577c922b88SBarry Smith MatMultTranspose_MPIBAIJ, 20587c922b88SBarry Smith MatMultTransposeAdd_MPIBAIJ, 2059cc2dc46cSBarry Smith 0, 2060cc2dc46cSBarry Smith 0, 2061cc2dc46cSBarry Smith 0, 206297304618SKris Buschelman /*10*/ 0, 2063cc2dc46cSBarry Smith 0, 2064cc2dc46cSBarry Smith 0, 2065cc2dc46cSBarry Smith 0, 2066cc2dc46cSBarry Smith MatTranspose_MPIBAIJ, 206797304618SKris Buschelman /*15*/ MatGetInfo_MPIBAIJ, 20687fc3c18eSBarry Smith MatEqual_MPIBAIJ, 2069cc2dc46cSBarry Smith MatGetDiagonal_MPIBAIJ, 2070cc2dc46cSBarry Smith MatDiagonalScale_MPIBAIJ, 2071cc2dc46cSBarry Smith MatNorm_MPIBAIJ, 207297304618SKris Buschelman /*20*/ MatAssemblyBegin_MPIBAIJ, 2073cc2dc46cSBarry Smith MatAssemblyEnd_MPIBAIJ, 2074cc2dc46cSBarry Smith MatSetOption_MPIBAIJ, 2075cc2dc46cSBarry Smith MatZeroEntries_MPIBAIJ, 2076d519adbfSMatthew Knepley /*24*/ MatZeroRows_MPIBAIJ, 2077cc2dc46cSBarry Smith 0, 2078cc2dc46cSBarry Smith 0, 2079cc2dc46cSBarry Smith 0, 2080cc2dc46cSBarry Smith 0, 2081d519adbfSMatthew Knepley /*29*/ MatSetUpPreallocation_MPIBAIJ, 2082273d9f13SBarry Smith 0, 2083cc2dc46cSBarry Smith 0, 2084cc2dc46cSBarry Smith 0, 2085cc2dc46cSBarry Smith 0, 2086d519adbfSMatthew Knepley /*34*/ MatDuplicate_MPIBAIJ, 2087cc2dc46cSBarry Smith 0, 2088cc2dc46cSBarry Smith 0, 2089cc2dc46cSBarry Smith 0, 2090cc2dc46cSBarry Smith 0, 2091d519adbfSMatthew Knepley /*39*/ MatAXPY_MPIBAIJ, 2092cc2dc46cSBarry Smith MatGetSubMatrices_MPIBAIJ, 2093cc2dc46cSBarry Smith MatIncreaseOverlap_MPIBAIJ, 2094cc2dc46cSBarry Smith MatGetValues_MPIBAIJ, 20953c896bc6SHong Zhang MatCopy_MPIBAIJ, 2096d519adbfSMatthew Knepley /*44*/ 0, 2097cc2dc46cSBarry Smith MatScale_MPIBAIJ, 2098cc2dc46cSBarry Smith 0, 2099cc2dc46cSBarry Smith 0, 2100cc2dc46cSBarry Smith 0, 2101d519adbfSMatthew Knepley /*49*/ 0, 2102cc2dc46cSBarry Smith 0, 2103cc2dc46cSBarry Smith 0, 2104cc2dc46cSBarry Smith 0, 2105cc2dc46cSBarry Smith 0, 2106d519adbfSMatthew Knepley /*54*/ 0, 2107cc2dc46cSBarry Smith 0, 2108cc2dc46cSBarry Smith MatSetUnfactored_MPIBAIJ, 210982094794SBarry Smith MatPermute_MPIBAIJ, 2110cc2dc46cSBarry Smith MatSetValuesBlocked_MPIBAIJ, 2111d519adbfSMatthew Knepley /*59*/ MatGetSubMatrix_MPIBAIJ, 2112f14a1c24SBarry Smith MatDestroy_MPIBAIJ, 2113f14a1c24SBarry Smith MatView_MPIBAIJ, 2114357abbc8SBarry Smith 0, 21157843d17aSBarry Smith 0, 2116d519adbfSMatthew Knepley /*64*/ 0, 21177843d17aSBarry Smith 0, 21187843d17aSBarry Smith 0, 21197843d17aSBarry Smith 0, 21207843d17aSBarry Smith 0, 2121d519adbfSMatthew Knepley /*69*/ MatGetRowMaxAbs_MPIBAIJ, 21227843d17aSBarry Smith 0, 212397304618SKris Buschelman 0, 212497304618SKris Buschelman 0, 212597304618SKris Buschelman 0, 2126d519adbfSMatthew Knepley /*74*/ 0, 212797304618SKris Buschelman 0, 212897304618SKris Buschelman 0, 212997304618SKris Buschelman 0, 213097304618SKris Buschelman 0, 2131d519adbfSMatthew Knepley /*79*/ 0, 213297304618SKris Buschelman 0, 213397304618SKris Buschelman 0, 213497304618SKris Buschelman 0, 2135865e5f61SKris Buschelman MatLoad_MPIBAIJ, 2136d519adbfSMatthew Knepley /*84*/ 0, 2137865e5f61SKris Buschelman 0, 2138865e5f61SKris Buschelman 0, 2139865e5f61SKris Buschelman 0, 2140865e5f61SKris Buschelman 0, 2141d519adbfSMatthew Knepley /*89*/ 0, 2142865e5f61SKris Buschelman 0, 2143865e5f61SKris Buschelman 0, 2144865e5f61SKris Buschelman 0, 2145865e5f61SKris Buschelman 0, 2146d519adbfSMatthew Knepley /*94*/ 0, 2147865e5f61SKris Buschelman 0, 2148865e5f61SKris Buschelman 0, 214999cafbc1SBarry Smith 0, 215099cafbc1SBarry Smith 0, 2151d519adbfSMatthew Knepley /*99*/ 0, 215299cafbc1SBarry Smith 0, 215399cafbc1SBarry Smith 0, 215499cafbc1SBarry Smith 0, 215599cafbc1SBarry Smith 0, 2156d519adbfSMatthew Knepley /*104*/0, 215799cafbc1SBarry Smith MatRealPart_MPIBAIJ, 21588c7482ecSBarry Smith MatImaginaryPart_MPIBAIJ, 21598c7482ecSBarry Smith 0, 21608c7482ecSBarry Smith 0, 2161d519adbfSMatthew Knepley /*109*/0, 21628c7482ecSBarry Smith 0, 21638c7482ecSBarry Smith 0, 21648c7482ecSBarry Smith 0, 21658c7482ecSBarry Smith 0, 2166d519adbfSMatthew Knepley /*114*/0, 21678c7482ecSBarry Smith 0, 21688c7482ecSBarry Smith MatGetGhosts_MPIBAIJ 21698c7482ecSBarry Smith }; 217079bdfe76SSatish Balay 21715ef9f2a5SBarry Smith 2172e18c124aSSatish Balay EXTERN_C_BEGIN 21734a2ae208SSatish Balay #undef __FUNCT__ 21744a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonalBlock_MPIBAIJ" 2175be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatGetDiagonalBlock_MPIBAIJ(Mat A,PetscTruth *iscopy,MatReuse reuse,Mat *a) 21765ef9f2a5SBarry Smith { 21775ef9f2a5SBarry Smith PetscFunctionBegin; 21785ef9f2a5SBarry Smith *a = ((Mat_MPIBAIJ *)A->data)->A; 21795ef9f2a5SBarry Smith *iscopy = PETSC_FALSE; 21805ef9f2a5SBarry Smith PetscFunctionReturn(0); 21815ef9f2a5SBarry Smith } 2182e18c124aSSatish Balay EXTERN_C_END 218379bdfe76SSatish Balay 2184273d9f13SBarry Smith EXTERN_C_BEGIN 2185f69a0ea3SMatthew Knepley extern PetscErrorCode PETSCMAT_DLLEXPORT MatConvert_MPIBAIJ_MPISBAIJ(Mat, MatType,MatReuse,Mat*); 2186d94109b8SHong Zhang EXTERN_C_END 2187d94109b8SHong Zhang 2188b8d659d7SLisandro Dalcin EXTERN_C_BEGIN 2189aac34f13SBarry Smith #undef __FUNCT__ 2190aac34f13SBarry Smith #define __FUNCT__ "MatMPIBAIJSetPreallocationCSR_MPIBAIJ" 2191cf12db73SBarry Smith PetscErrorCode MatMPIBAIJSetPreallocationCSR_MPIBAIJ(Mat B,PetscInt bs,const PetscInt ii[],const PetscInt jj[],const PetscScalar V[]) 2192aac34f13SBarry Smith { 2193b8d659d7SLisandro Dalcin PetscInt m,rstart,cstart,cend; 2194b8d659d7SLisandro Dalcin PetscInt i,j,d,nz,nz_max=0,*d_nnz=0,*o_nnz=0; 2195b8d659d7SLisandro Dalcin const PetscInt *JJ=0; 2196b8d659d7SLisandro Dalcin PetscScalar *values=0; 2197aac34f13SBarry Smith PetscErrorCode ierr; 2198aac34f13SBarry Smith 2199aac34f13SBarry Smith PetscFunctionBegin; 2200b8d659d7SLisandro Dalcin 2201b8d659d7SLisandro Dalcin if (bs < 1) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Invalid block size specified, must be positive but it is %D",bs); 22027408324eSLisandro Dalcin ierr = PetscMapSetBlockSize(B->rmap,bs);CHKERRQ(ierr); 22037408324eSLisandro Dalcin ierr = PetscMapSetBlockSize(B->cmap,bs);CHKERRQ(ierr); 2204d0f46423SBarry Smith ierr = PetscMapSetUp(B->rmap);CHKERRQ(ierr); 2205d0f46423SBarry Smith ierr = PetscMapSetUp(B->cmap);CHKERRQ(ierr); 2206d0f46423SBarry Smith m = B->rmap->n/bs; 2207d0f46423SBarry Smith rstart = B->rmap->rstart/bs; 2208d0f46423SBarry Smith cstart = B->cmap->rstart/bs; 2209d0f46423SBarry Smith cend = B->cmap->rend/bs; 2210b8d659d7SLisandro Dalcin 2211cf12db73SBarry Smith if (ii[0]) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"ii[0] must be 0 but it is %D",ii[0]); 2212aac34f13SBarry Smith ierr = PetscMalloc((2*m+1)*sizeof(PetscInt),&d_nnz);CHKERRQ(ierr); 2213aac34f13SBarry Smith o_nnz = d_nnz + m; 2214aac34f13SBarry Smith for (i=0; i<m; i++) { 2215cf12db73SBarry Smith nz = ii[i+1] - ii[i]; 2216b8d659d7SLisandro Dalcin if (nz < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Local row %D has a negative number of columns %D",i,nz); 2217b8d659d7SLisandro Dalcin nz_max = PetscMax(nz_max,nz); 2218cf12db73SBarry Smith JJ = jj + ii[i]; 2219b8d659d7SLisandro Dalcin for (j=0; j<nz; j++) { 2220aac34f13SBarry Smith if (*JJ >= cstart) break; 2221aac34f13SBarry Smith JJ++; 2222aac34f13SBarry Smith } 2223aac34f13SBarry Smith d = 0; 2224b8d659d7SLisandro Dalcin for (; j<nz; j++) { 2225aac34f13SBarry Smith if (*JJ++ >= cend) break; 2226aac34f13SBarry Smith d++; 2227aac34f13SBarry Smith } 2228aac34f13SBarry Smith d_nnz[i] = d; 2229b8d659d7SLisandro Dalcin o_nnz[i] = nz - d; 2230aac34f13SBarry Smith } 2231aac34f13SBarry Smith ierr = MatMPIBAIJSetPreallocation(B,bs,0,d_nnz,0,o_nnz);CHKERRQ(ierr); 2232aac34f13SBarry Smith ierr = PetscFree(d_nnz);CHKERRQ(ierr); 2233aac34f13SBarry Smith 2234b8d659d7SLisandro Dalcin values = (PetscScalar*)V; 2235b8d659d7SLisandro Dalcin if (!values) { 2236b8d659d7SLisandro Dalcin ierr = PetscMalloc(bs*bs*(nz_max+1)*sizeof(PetscScalar),&values);CHKERRQ(ierr); 2237b8d659d7SLisandro Dalcin ierr = PetscMemzero(values,bs*bs*nz_max*sizeof(PetscScalar));CHKERRQ(ierr); 2238b8d659d7SLisandro Dalcin } 2239b8d659d7SLisandro Dalcin for (i=0; i<m; i++) { 2240b8d659d7SLisandro Dalcin PetscInt row = i + rstart; 2241cf12db73SBarry Smith PetscInt ncols = ii[i+1] - ii[i]; 2242cf12db73SBarry Smith const PetscInt *icols = jj + ii[i]; 2243cf12db73SBarry Smith const PetscScalar *svals = values + (V ? (bs*bs*ii[i]) : 0); 2244b8d659d7SLisandro Dalcin ierr = MatSetValuesBlocked_MPIBAIJ(B,1,&row,ncols,icols,svals,INSERT_VALUES);CHKERRQ(ierr); 2245aac34f13SBarry Smith } 2246aac34f13SBarry Smith 2247b8d659d7SLisandro Dalcin if (!V) { ierr = PetscFree(values);CHKERRQ(ierr); } 2248aac34f13SBarry Smith ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 2249aac34f13SBarry Smith ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 2250aac34f13SBarry Smith 2251aac34f13SBarry Smith PetscFunctionReturn(0); 2252aac34f13SBarry Smith } 2253b8d659d7SLisandro Dalcin EXTERN_C_END 2254aac34f13SBarry Smith 2255aac34f13SBarry Smith #undef __FUNCT__ 2256aac34f13SBarry Smith #define __FUNCT__ "MatMPIBAIJSetPreallocationCSR" 2257aac34f13SBarry Smith /*@C 2258aac34f13SBarry Smith MatMPIBAIJSetPreallocationCSR - Allocates memory for a sparse parallel matrix in AIJ format 2259aac34f13SBarry Smith (the default parallel PETSc format). 2260aac34f13SBarry Smith 2261aac34f13SBarry Smith Collective on MPI_Comm 2262aac34f13SBarry Smith 2263aac34f13SBarry Smith Input Parameters: 2264aac34f13SBarry Smith + A - the matrix 2265aac34f13SBarry Smith . i - the indices into j for the start of each local row (starts with zero) 2266aac34f13SBarry Smith . j - the column indices for each local row (starts with zero) these must be sorted for each row 2267aac34f13SBarry Smith - v - optional values in the matrix 2268aac34f13SBarry Smith 2269aac34f13SBarry Smith Level: developer 2270aac34f13SBarry Smith 2271aac34f13SBarry Smith .keywords: matrix, aij, compressed row, sparse, parallel 2272aac34f13SBarry Smith 2273aac34f13SBarry Smith .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatMPIBAIJSetPreallocation(), MatCreateMPIAIJ(), MPIAIJ 2274aac34f13SBarry Smith @*/ 2275be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPIBAIJSetPreallocationCSR(Mat B,PetscInt bs,const PetscInt i[],const PetscInt j[], const PetscScalar v[]) 2276aac34f13SBarry Smith { 2277aac34f13SBarry Smith PetscErrorCode ierr,(*f)(Mat,PetscInt,const PetscInt[],const PetscInt[],const PetscScalar[]); 2278aac34f13SBarry Smith 2279aac34f13SBarry Smith PetscFunctionBegin; 2280aac34f13SBarry Smith ierr = PetscObjectQueryFunction((PetscObject)B,"MatMPIBAIJSetPreallocationCSR_C",(void (**)(void))&f);CHKERRQ(ierr); 2281aac34f13SBarry Smith if (f) { 2282aac34f13SBarry Smith ierr = (*f)(B,bs,i,j,v);CHKERRQ(ierr); 2283aac34f13SBarry Smith } 2284aac34f13SBarry Smith PetscFunctionReturn(0); 2285aac34f13SBarry Smith } 2286aac34f13SBarry Smith 2287d94109b8SHong Zhang EXTERN_C_BEGIN 22884a2ae208SSatish Balay #undef __FUNCT__ 2289a23d5eceSKris Buschelman #define __FUNCT__ "MatMPIBAIJSetPreallocation_MPIBAIJ" 2290be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPIBAIJSetPreallocation_MPIBAIJ(Mat B,PetscInt bs,PetscInt d_nz,PetscInt *d_nnz,PetscInt o_nz,PetscInt *o_nnz) 2291a23d5eceSKris Buschelman { 2292a23d5eceSKris Buschelman Mat_MPIBAIJ *b; 2293dfbe8321SBarry Smith PetscErrorCode ierr; 2294db4efbfdSBarry Smith PetscInt i, newbs = PetscAbs(bs); 2295a23d5eceSKris Buschelman 2296a23d5eceSKris Buschelman PetscFunctionBegin; 2297db4efbfdSBarry Smith if (bs < 0) { 22987adad957SLisandro Dalcin ierr = PetscOptionsBegin(((PetscObject)B)->comm,((PetscObject)B)->prefix,"Options for MPIBAIJ matrix","Mat");CHKERRQ(ierr); 2299db4efbfdSBarry Smith ierr = PetscOptionsInt("-mat_block_size","Set the blocksize used to store the matrix","MatMPIBAIJSetPreallocation",newbs,&newbs,PETSC_NULL);CHKERRQ(ierr); 23008c07d4e3SBarry Smith ierr = PetscOptionsEnd();CHKERRQ(ierr); 2301db4efbfdSBarry Smith bs = PetscAbs(bs); 2302db4efbfdSBarry Smith } 2303db4efbfdSBarry Smith if ((d_nnz || o_nnz) && newbs != bs) { 2304db4efbfdSBarry Smith SETERRQ(PETSC_ERR_ARG_WRONG,"Cannot change blocksize from command line if setting d_nnz or o_nnz"); 2305db4efbfdSBarry Smith } 2306db4efbfdSBarry Smith bs = newbs; 2307db4efbfdSBarry Smith 2308a23d5eceSKris Buschelman 2309a23d5eceSKris Buschelman if (bs < 1) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Invalid block size specified, must be positive"); 2310a23d5eceSKris Buschelman if (d_nz == PETSC_DEFAULT || d_nz == PETSC_DECIDE) d_nz = 5; 2311a23d5eceSKris Buschelman if (o_nz == PETSC_DEFAULT || o_nz == PETSC_DECIDE) o_nz = 2; 231277431f27SBarry Smith if (d_nz < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"d_nz cannot be less than 0: value %D",d_nz); 231377431f27SBarry Smith if (o_nz < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"o_nz cannot be less than 0: value %D",o_nz); 2314899cda47SBarry Smith 23157408324eSLisandro Dalcin ierr = PetscMapSetBlockSize(B->rmap,bs);CHKERRQ(ierr); 23167408324eSLisandro Dalcin ierr = PetscMapSetBlockSize(B->cmap,bs);CHKERRQ(ierr); 2317d0f46423SBarry Smith ierr = PetscMapSetUp(B->rmap);CHKERRQ(ierr); 2318d0f46423SBarry Smith ierr = PetscMapSetUp(B->cmap);CHKERRQ(ierr); 2319899cda47SBarry Smith 2320a23d5eceSKris Buschelman if (d_nnz) { 2321d0f46423SBarry Smith for (i=0; i<B->rmap->n/bs; i++) { 232277431f27SBarry Smith if (d_nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"d_nnz cannot be less than -1: local row %D value %D",i,d_nnz[i]); 2323a23d5eceSKris Buschelman } 2324a23d5eceSKris Buschelman } 2325a23d5eceSKris Buschelman if (o_nnz) { 2326d0f46423SBarry Smith for (i=0; i<B->rmap->n/bs; i++) { 232777431f27SBarry Smith if (o_nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"o_nnz cannot be less than -1: local row %D value %D",i,o_nnz[i]); 2328a23d5eceSKris Buschelman } 2329a23d5eceSKris Buschelman } 2330a23d5eceSKris Buschelman 2331a23d5eceSKris Buschelman b = (Mat_MPIBAIJ*)B->data; 2332a23d5eceSKris Buschelman b->bs2 = bs*bs; 2333d0f46423SBarry Smith b->mbs = B->rmap->n/bs; 2334d0f46423SBarry Smith b->nbs = B->cmap->n/bs; 2335d0f46423SBarry Smith b->Mbs = B->rmap->N/bs; 2336d0f46423SBarry Smith b->Nbs = B->cmap->N/bs; 2337a23d5eceSKris Buschelman 2338a23d5eceSKris Buschelman for (i=0; i<=b->size; i++) { 2339d0f46423SBarry Smith b->rangebs[i] = B->rmap->range[i]/bs; 2340a23d5eceSKris Buschelman } 2341d0f46423SBarry Smith b->rstartbs = B->rmap->rstart/bs; 2342d0f46423SBarry Smith b->rendbs = B->rmap->rend/bs; 2343d0f46423SBarry Smith b->cstartbs = B->cmap->rstart/bs; 2344d0f46423SBarry Smith b->cendbs = B->cmap->rend/bs; 2345a23d5eceSKris Buschelman 2346526dfc15SBarry Smith if (!B->preallocated) { 2347f69a0ea3SMatthew Knepley ierr = MatCreate(PETSC_COMM_SELF,&b->A);CHKERRQ(ierr); 2348d0f46423SBarry Smith ierr = MatSetSizes(b->A,B->rmap->n,B->cmap->n,B->rmap->n,B->cmap->n);CHKERRQ(ierr); 23499c097c71SKris Buschelman ierr = MatSetType(b->A,MATSEQBAIJ);CHKERRQ(ierr); 235052e6d16bSBarry Smith ierr = PetscLogObjectParent(B,b->A);CHKERRQ(ierr); 2351f69a0ea3SMatthew Knepley ierr = MatCreate(PETSC_COMM_SELF,&b->B);CHKERRQ(ierr); 2352d0f46423SBarry Smith ierr = MatSetSizes(b->B,B->rmap->n,B->cmap->N,B->rmap->n,B->cmap->N);CHKERRQ(ierr); 23539c097c71SKris Buschelman ierr = MatSetType(b->B,MATSEQBAIJ);CHKERRQ(ierr); 235452e6d16bSBarry Smith ierr = PetscLogObjectParent(B,b->B);CHKERRQ(ierr); 23557adad957SLisandro Dalcin ierr = MatStashCreate_Private(((PetscObject)B)->comm,bs,&B->bstash);CHKERRQ(ierr); 2356526dfc15SBarry Smith } 2357a23d5eceSKris Buschelman 2358526dfc15SBarry Smith ierr = MatSeqBAIJSetPreallocation(b->A,bs,d_nz,d_nnz);CHKERRQ(ierr); 2359526dfc15SBarry Smith ierr = MatSeqBAIJSetPreallocation(b->B,bs,o_nz,o_nnz);CHKERRQ(ierr); 2360526dfc15SBarry Smith B->preallocated = PETSC_TRUE; 2361a23d5eceSKris Buschelman PetscFunctionReturn(0); 2362a23d5eceSKris Buschelman } 2363a23d5eceSKris Buschelman EXTERN_C_END 2364a23d5eceSKris Buschelman 2365a23d5eceSKris Buschelman EXTERN_C_BEGIN 2366be1d678aSKris Buschelman EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatDiagonalScaleLocal_MPIBAIJ(Mat,Vec); 2367be1d678aSKris Buschelman EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatSetHashTableFactor_MPIBAIJ(Mat,PetscReal); 236892b32695SKris Buschelman EXTERN_C_END 23695bf65638SKris Buschelman 237082094794SBarry Smith 237182094794SBarry Smith EXTERN_C_BEGIN 237282094794SBarry Smith #undef __FUNCT__ 237382094794SBarry Smith #define __FUNCT__ "MatConvert_MPIBAIJ_MPIAdj" 237482094794SBarry Smith PetscErrorCode PETSCMAT_DLLEXPORT MatConvert_MPIBAIJ_MPIAdj(Mat B, const MatType newtype,MatReuse reuse,Mat *adj) 237582094794SBarry Smith { 237682094794SBarry Smith Mat_MPIBAIJ *b = (Mat_MPIBAIJ*)B->data; 237782094794SBarry Smith PetscErrorCode ierr; 237882094794SBarry Smith Mat_SeqBAIJ *d = (Mat_SeqBAIJ*) b->A->data,*o = (Mat_SeqBAIJ*) b->B->data; 237982094794SBarry Smith PetscInt M = B->rmap->n/B->rmap->bs,i,*ii,*jj,cnt,j,k,rstart = B->rmap->rstart/B->rmap->bs; 238082094794SBarry Smith const PetscInt *id = d->i, *jd = d->j, *io = o->i, *jo = o->j, *garray = b->garray; 238182094794SBarry Smith 238282094794SBarry Smith PetscFunctionBegin; 238382094794SBarry Smith ierr = PetscMalloc((M+1)*sizeof(PetscInt),&ii);CHKERRQ(ierr); 238482094794SBarry Smith ii[0] = 0; 238582094794SBarry Smith CHKMEMQ; 238682094794SBarry Smith for (i=0; i<M; i++) { 238782094794SBarry Smith if ((id[i+1] - id[i]) < 0) SETERRQ3(PETSC_ERR_PLIB,"Indices wrong %D %D %D",i,id[i],id[i+1]); 238882094794SBarry Smith if ((io[i+1] - io[i]) < 0) SETERRQ3(PETSC_ERR_PLIB,"Indices wrong %D %D %D",i,io[i],io[i+1]); 238982094794SBarry Smith ii[i+1] = ii[i] + id[i+1] - id[i] + io[i+1] - io[i]; 239082094794SBarry Smith /* remove one from count of matrix has diagonal */ 239182094794SBarry Smith for (j=id[i]; j<id[i+1]; j++) { 239282094794SBarry Smith if (jd[j] == i) {ii[i+1]--;break;} 239382094794SBarry Smith } 239482094794SBarry Smith CHKMEMQ; 239582094794SBarry Smith } 239682094794SBarry Smith ierr = PetscMalloc(ii[M]*sizeof(PetscInt),&jj);CHKERRQ(ierr); 239782094794SBarry Smith cnt = 0; 239882094794SBarry Smith for (i=0; i<M; i++) { 239982094794SBarry Smith for (j=io[i]; j<io[i+1]; j++) { 240082094794SBarry Smith if (garray[jo[j]] > rstart) break; 240182094794SBarry Smith jj[cnt++] = garray[jo[j]]; 240282094794SBarry Smith CHKMEMQ; 240382094794SBarry Smith } 240482094794SBarry Smith for (k=id[i]; k<id[i+1]; k++) { 240582094794SBarry Smith if (jd[k] != i) { 240682094794SBarry Smith jj[cnt++] = rstart + jd[k]; 240782094794SBarry Smith CHKMEMQ; 240882094794SBarry Smith } 240982094794SBarry Smith } 241082094794SBarry Smith for (;j<io[i+1]; j++) { 241182094794SBarry Smith jj[cnt++] = garray[jo[j]]; 241282094794SBarry Smith CHKMEMQ; 241382094794SBarry Smith } 241482094794SBarry Smith } 241582094794SBarry Smith ierr = MatCreateMPIAdj(((PetscObject)B)->comm,M,B->cmap->N/B->rmap->bs,ii,jj,PETSC_NULL,adj);CHKERRQ(ierr); 241682094794SBarry Smith PetscFunctionReturn(0); 241782094794SBarry Smith } 2418dbf0e21dSBarry Smith EXTERN_C_END 241982094794SBarry Smith 24200bad9183SKris Buschelman /*MC 2421fafad747SKris Buschelman MATMPIBAIJ - MATMPIBAIJ = "mpibaij" - A matrix type to be used for distributed block sparse matrices. 24220bad9183SKris Buschelman 24230bad9183SKris Buschelman Options Database Keys: 24248c07d4e3SBarry Smith + -mat_type mpibaij - sets the matrix type to "mpibaij" during a call to MatSetFromOptions() 24258c07d4e3SBarry Smith . -mat_block_size <bs> - set the blocksize used to store the matrix 24268c07d4e3SBarry Smith - -mat_use_hash_table <fact> 24270bad9183SKris Buschelman 24280bad9183SKris Buschelman Level: beginner 24290bad9183SKris Buschelman 24300bad9183SKris Buschelman .seealso: MatCreateMPIBAIJ 24310bad9183SKris Buschelman M*/ 24320bad9183SKris Buschelman 243392b32695SKris Buschelman EXTERN_C_BEGIN 2434a23d5eceSKris Buschelman #undef __FUNCT__ 24354a2ae208SSatish Balay #define __FUNCT__ "MatCreate_MPIBAIJ" 2436be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreate_MPIBAIJ(Mat B) 2437273d9f13SBarry Smith { 2438273d9f13SBarry Smith Mat_MPIBAIJ *b; 2439dfbe8321SBarry Smith PetscErrorCode ierr; 2440273d9f13SBarry Smith PetscTruth flg; 2441273d9f13SBarry Smith 2442273d9f13SBarry Smith PetscFunctionBegin; 244338f2d2fdSLisandro Dalcin ierr = PetscNewLog(B,Mat_MPIBAIJ,&b);CHKERRQ(ierr); 244482502324SSatish Balay B->data = (void*)b; 244582502324SSatish Balay 2446085a36d4SBarry Smith 2447273d9f13SBarry Smith ierr = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr); 2448273d9f13SBarry Smith B->mapping = 0; 2449273d9f13SBarry Smith B->assembled = PETSC_FALSE; 2450273d9f13SBarry Smith 2451273d9f13SBarry Smith B->insertmode = NOT_SET_VALUES; 24527adad957SLisandro Dalcin ierr = MPI_Comm_rank(((PetscObject)B)->comm,&b->rank);CHKERRQ(ierr); 24537adad957SLisandro Dalcin ierr = MPI_Comm_size(((PetscObject)B)->comm,&b->size);CHKERRQ(ierr); 2454273d9f13SBarry Smith 2455273d9f13SBarry Smith /* build local table of row and column ownerships */ 2456899cda47SBarry Smith ierr = PetscMalloc((b->size+1)*sizeof(PetscInt),&b->rangebs);CHKERRQ(ierr); 2457273d9f13SBarry Smith 2458273d9f13SBarry Smith /* build cache for off array entries formed */ 24597adad957SLisandro Dalcin ierr = MatStashCreate_Private(((PetscObject)B)->comm,1,&B->stash);CHKERRQ(ierr); 2460273d9f13SBarry Smith b->donotstash = PETSC_FALSE; 2461273d9f13SBarry Smith b->colmap = PETSC_NULL; 2462273d9f13SBarry Smith b->garray = PETSC_NULL; 2463273d9f13SBarry Smith b->roworiented = PETSC_TRUE; 2464273d9f13SBarry Smith 2465273d9f13SBarry Smith /* stuff used in block assembly */ 2466273d9f13SBarry Smith b->barray = 0; 2467273d9f13SBarry Smith 2468273d9f13SBarry Smith /* stuff used for matrix vector multiply */ 2469273d9f13SBarry Smith b->lvec = 0; 2470273d9f13SBarry Smith b->Mvctx = 0; 2471273d9f13SBarry Smith 2472273d9f13SBarry Smith /* stuff for MatGetRow() */ 2473273d9f13SBarry Smith b->rowindices = 0; 2474273d9f13SBarry Smith b->rowvalues = 0; 2475273d9f13SBarry Smith b->getrowactive = PETSC_FALSE; 2476273d9f13SBarry Smith 2477273d9f13SBarry Smith /* hash table stuff */ 2478273d9f13SBarry Smith b->ht = 0; 2479273d9f13SBarry Smith b->hd = 0; 2480273d9f13SBarry Smith b->ht_size = 0; 2481273d9f13SBarry Smith b->ht_flag = PETSC_FALSE; 2482273d9f13SBarry Smith b->ht_fact = 0; 2483273d9f13SBarry Smith b->ht_total_ct = 0; 2484273d9f13SBarry Smith b->ht_insert_ct = 0; 2485273d9f13SBarry Smith 24867adad957SLisandro Dalcin ierr = PetscOptionsBegin(((PetscObject)B)->comm,PETSC_NULL,"Options for loading MPIBAIJ matrix 1","Mat");CHKERRQ(ierr); 24878c07d4e3SBarry Smith ierr = PetscOptionsTruth("-mat_use_hash_table","Use hash table to save memory in constructing matrix","MatSetOption",PETSC_FALSE,&flg,PETSC_NULL);CHKERRQ(ierr); 2488273d9f13SBarry Smith if (flg) { 2489f6275e2eSBarry Smith PetscReal fact = 1.39; 24904e0d8c25SBarry Smith ierr = MatSetOption(B,MAT_USE_HASH_TABLE,PETSC_TRUE);CHKERRQ(ierr); 24918c07d4e3SBarry Smith ierr = PetscOptionsReal("-mat_use_hash_table","Use hash table factor","MatMPIBAIJSetHashTableFactor",fact,&fact,PETSC_NULL);CHKERRQ(ierr); 2492273d9f13SBarry Smith if (fact <= 1.0) fact = 1.39; 2493273d9f13SBarry Smith ierr = MatMPIBAIJSetHashTableFactor(B,fact);CHKERRQ(ierr); 24941e2582c4SBarry Smith ierr = PetscInfo1(B,"Hash table Factor used %5.2f\n",fact);CHKERRQ(ierr); 2495273d9f13SBarry Smith } 24968c07d4e3SBarry Smith ierr = PetscOptionsEnd();CHKERRQ(ierr); 24978c07d4e3SBarry Smith 249882094794SBarry Smith ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatConvert_mpibaij_mpiadj_C", 249982094794SBarry Smith "MatConvert_MPIBAIJ_MPIAdj", 250082094794SBarry Smith MatConvert_MPIBAIJ_MPIAdj);CHKERRQ(ierr); 2501273d9f13SBarry Smith ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatStoreValues_C", 2502273d9f13SBarry Smith "MatStoreValues_MPIBAIJ", 2503273d9f13SBarry Smith MatStoreValues_MPIBAIJ);CHKERRQ(ierr); 2504273d9f13SBarry Smith ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatRetrieveValues_C", 2505273d9f13SBarry Smith "MatRetrieveValues_MPIBAIJ", 2506273d9f13SBarry Smith MatRetrieveValues_MPIBAIJ);CHKERRQ(ierr); 2507273d9f13SBarry Smith ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetDiagonalBlock_C", 2508273d9f13SBarry Smith "MatGetDiagonalBlock_MPIBAIJ", 2509273d9f13SBarry Smith MatGetDiagonalBlock_MPIBAIJ);CHKERRQ(ierr); 2510a23d5eceSKris Buschelman ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatMPIBAIJSetPreallocation_C", 2511a23d5eceSKris Buschelman "MatMPIBAIJSetPreallocation_MPIBAIJ", 2512a23d5eceSKris Buschelman MatMPIBAIJSetPreallocation_MPIBAIJ);CHKERRQ(ierr); 2513aac34f13SBarry Smith ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatMPIBAIJSetPreallocationCSR_C", 251444ec7894SLisandro Dalcin "MatMPIBAIJSetPreallocationCSR_MPIBAIJ", 2515aac34f13SBarry Smith MatMPIBAIJSetPreallocationCSR_MPIBAIJ);CHKERRQ(ierr); 251692b32695SKris Buschelman ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatDiagonalScaleLocal_C", 251792b32695SKris Buschelman "MatDiagonalScaleLocal_MPIBAIJ", 251892b32695SKris Buschelman MatDiagonalScaleLocal_MPIBAIJ);CHKERRQ(ierr); 25195bf65638SKris Buschelman ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatSetHashTableFactor_C", 25205bf65638SKris Buschelman "MatSetHashTableFactor_MPIBAIJ", 25215bf65638SKris Buschelman MatSetHashTableFactor_MPIBAIJ);CHKERRQ(ierr); 252217667f90SBarry Smith ierr = PetscObjectChangeTypeName((PetscObject)B,MATMPIBAIJ);CHKERRQ(ierr); 2523273d9f13SBarry Smith PetscFunctionReturn(0); 2524273d9f13SBarry Smith } 2525273d9f13SBarry Smith EXTERN_C_END 2526273d9f13SBarry Smith 2527209238afSKris Buschelman /*MC 2528002d173eSKris Buschelman MATBAIJ - MATBAIJ = "baij" - A matrix type to be used for block sparse matrices. 2529209238afSKris Buschelman 2530209238afSKris Buschelman This matrix type is identical to MATSEQBAIJ when constructed with a single process communicator, 2531209238afSKris Buschelman and MATMPIBAIJ otherwise. 2532209238afSKris Buschelman 2533209238afSKris Buschelman Options Database Keys: 2534209238afSKris Buschelman . -mat_type baij - sets the matrix type to "baij" during a call to MatSetFromOptions() 2535209238afSKris Buschelman 2536209238afSKris Buschelman Level: beginner 2537209238afSKris Buschelman 2538aac34f13SBarry Smith .seealso: MatCreateMPIBAIJ(),MATSEQBAIJ,MATMPIBAIJ, MatMPIBAIJSetPreallocation(), MatMPIBAIJSetPreallocationCSR() 2539209238afSKris Buschelman M*/ 2540209238afSKris Buschelman 2541209238afSKris Buschelman EXTERN_C_BEGIN 2542209238afSKris Buschelman #undef __FUNCT__ 2543209238afSKris Buschelman #define __FUNCT__ "MatCreate_BAIJ" 2544be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreate_BAIJ(Mat A) 2545dfbe8321SBarry Smith { 25466849ba73SBarry Smith PetscErrorCode ierr; 2547b24ad042SBarry Smith PetscMPIInt size; 2548209238afSKris Buschelman 2549209238afSKris Buschelman PetscFunctionBegin; 25507adad957SLisandro Dalcin ierr = MPI_Comm_size(((PetscObject)A)->comm,&size);CHKERRQ(ierr); 2551209238afSKris Buschelman if (size == 1) { 2552209238afSKris Buschelman ierr = MatSetType(A,MATSEQBAIJ);CHKERRQ(ierr); 2553209238afSKris Buschelman } else { 2554209238afSKris Buschelman ierr = MatSetType(A,MATMPIBAIJ);CHKERRQ(ierr); 2555209238afSKris Buschelman } 2556209238afSKris Buschelman PetscFunctionReturn(0); 2557209238afSKris Buschelman } 2558209238afSKris Buschelman EXTERN_C_END 2559209238afSKris Buschelman 25604a2ae208SSatish Balay #undef __FUNCT__ 25614a2ae208SSatish Balay #define __FUNCT__ "MatMPIBAIJSetPreallocation" 2562273d9f13SBarry Smith /*@C 2563aac34f13SBarry Smith MatMPIBAIJSetPreallocation - Allocates memory for a sparse parallel matrix in block AIJ format 2564273d9f13SBarry Smith (block compressed row). For good matrix assembly performance 2565273d9f13SBarry Smith the user should preallocate the matrix storage by setting the parameters 2566273d9f13SBarry Smith d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 2567273d9f13SBarry Smith performance can be increased by more than a factor of 50. 2568273d9f13SBarry Smith 2569273d9f13SBarry Smith Collective on Mat 2570273d9f13SBarry Smith 2571273d9f13SBarry Smith Input Parameters: 2572273d9f13SBarry Smith + A - the matrix 2573273d9f13SBarry Smith . bs - size of blockk 2574273d9f13SBarry Smith . d_nz - number of block nonzeros per block row in diagonal portion of local 2575273d9f13SBarry Smith submatrix (same for all local rows) 2576273d9f13SBarry Smith . d_nnz - array containing the number of block nonzeros in the various block rows 2577273d9f13SBarry Smith of the in diagonal portion of the local (possibly different for each block 2578273d9f13SBarry Smith row) or PETSC_NULL. You must leave room for the diagonal entry even if it is zero. 2579273d9f13SBarry Smith . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 2580273d9f13SBarry Smith submatrix (same for all local rows). 2581273d9f13SBarry Smith - o_nnz - array containing the number of nonzeros in the various block rows of the 2582273d9f13SBarry Smith off-diagonal portion of the local submatrix (possibly different for 2583273d9f13SBarry Smith each block row) or PETSC_NULL. 2584273d9f13SBarry Smith 258549a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 2586273d9f13SBarry Smith 2587273d9f13SBarry Smith Options Database Keys: 25888c07d4e3SBarry Smith + -mat_block_size - size of the blocks to use 25898c07d4e3SBarry Smith - -mat_use_hash_table <fact> 2590273d9f13SBarry Smith 2591273d9f13SBarry Smith Notes: 2592273d9f13SBarry Smith If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one processor 2593273d9f13SBarry Smith than it must be used on all processors that share the object for that argument. 2594273d9f13SBarry Smith 2595273d9f13SBarry Smith Storage Information: 2596273d9f13SBarry Smith For a square global matrix we define each processor's diagonal portion 2597273d9f13SBarry Smith to be its local rows and the corresponding columns (a square submatrix); 2598273d9f13SBarry Smith each processor's off-diagonal portion encompasses the remainder of the 2599273d9f13SBarry Smith local matrix (a rectangular submatrix). 2600273d9f13SBarry Smith 2601273d9f13SBarry Smith The user can specify preallocated storage for the diagonal part of 2602273d9f13SBarry Smith the local submatrix with either d_nz or d_nnz (not both). Set 2603273d9f13SBarry Smith d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic 2604273d9f13SBarry Smith memory allocation. Likewise, specify preallocated storage for the 2605273d9f13SBarry Smith off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 2606273d9f13SBarry Smith 2607273d9f13SBarry Smith Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 2608273d9f13SBarry Smith the figure below we depict these three local rows and all columns (0-11). 2609273d9f13SBarry Smith 2610273d9f13SBarry Smith .vb 2611273d9f13SBarry Smith 0 1 2 3 4 5 6 7 8 9 10 11 2612273d9f13SBarry Smith ------------------- 2613273d9f13SBarry Smith row 3 | o o o d d d o o o o o o 2614273d9f13SBarry Smith row 4 | o o o d d d o o o o o o 2615273d9f13SBarry Smith row 5 | o o o d d d o o o o o o 2616273d9f13SBarry Smith ------------------- 2617273d9f13SBarry Smith .ve 2618273d9f13SBarry Smith 2619273d9f13SBarry Smith Thus, any entries in the d locations are stored in the d (diagonal) 2620273d9f13SBarry Smith submatrix, and any entries in the o locations are stored in the 2621273d9f13SBarry Smith o (off-diagonal) submatrix. Note that the d and the o submatrices are 2622273d9f13SBarry Smith stored simply in the MATSEQBAIJ format for compressed row storage. 2623273d9f13SBarry Smith 2624273d9f13SBarry Smith Now d_nz should indicate the number of block nonzeros per row in the d matrix, 2625273d9f13SBarry Smith and o_nz should indicate the number of block nonzeros per row in the o matrix. 2626273d9f13SBarry Smith In general, for PDE problems in which most nonzeros are near the diagonal, 2627273d9f13SBarry Smith one expects d_nz >> o_nz. For large problems you MUST preallocate memory 2628273d9f13SBarry Smith or you will get TERRIBLE performance; see the users' manual chapter on 2629273d9f13SBarry Smith matrices. 2630273d9f13SBarry Smith 2631aa95bbe8SBarry Smith You can call MatGetInfo() to get information on how effective the preallocation was; 2632aa95bbe8SBarry Smith for example the fields mallocs,nz_allocated,nz_used,nz_unneeded; 2633aa95bbe8SBarry Smith You can also run with the option -info and look for messages with the string 2634aa95bbe8SBarry Smith malloc in them to see if additional memory allocation was needed. 2635aa95bbe8SBarry Smith 2636273d9f13SBarry Smith Level: intermediate 2637273d9f13SBarry Smith 2638273d9f13SBarry Smith .keywords: matrix, block, aij, compressed row, sparse, parallel 2639273d9f13SBarry Smith 2640aac34f13SBarry Smith .seealso: MatCreate(), MatCreateSeqBAIJ(), MatSetValues(), MatCreateMPIBAIJ(), MatMPIBAIJSetPreallocationCSR() 2641273d9f13SBarry Smith @*/ 2642be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPIBAIJSetPreallocation(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[]) 2643273d9f13SBarry Smith { 2644b24ad042SBarry Smith PetscErrorCode ierr,(*f)(Mat,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[]); 2645273d9f13SBarry Smith 2646273d9f13SBarry Smith PetscFunctionBegin; 2647a23d5eceSKris Buschelman ierr = PetscObjectQueryFunction((PetscObject)B,"MatMPIBAIJSetPreallocation_C",(void (**)(void))&f);CHKERRQ(ierr); 2648a23d5eceSKris Buschelman if (f) { 2649a23d5eceSKris Buschelman ierr = (*f)(B,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr); 2650273d9f13SBarry Smith } 2651273d9f13SBarry Smith PetscFunctionReturn(0); 2652273d9f13SBarry Smith } 2653273d9f13SBarry Smith 26544a2ae208SSatish Balay #undef __FUNCT__ 26554a2ae208SSatish Balay #define __FUNCT__ "MatCreateMPIBAIJ" 265679bdfe76SSatish Balay /*@C 265779bdfe76SSatish Balay MatCreateMPIBAIJ - Creates a sparse parallel matrix in block AIJ format 265879bdfe76SSatish Balay (block compressed row). For good matrix assembly performance 265979bdfe76SSatish Balay the user should preallocate the matrix storage by setting the parameters 266079bdfe76SSatish Balay d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 266179bdfe76SSatish Balay performance can be increased by more than a factor of 50. 266279bdfe76SSatish Balay 2663db81eaa0SLois Curfman McInnes Collective on MPI_Comm 2664db81eaa0SLois Curfman McInnes 266579bdfe76SSatish Balay Input Parameters: 2666db81eaa0SLois Curfman McInnes + comm - MPI communicator 266779bdfe76SSatish Balay . bs - size of blockk 266879bdfe76SSatish Balay . m - number of local rows (or PETSC_DECIDE to have calculated if M is given) 266992e8d321SLois Curfman McInnes This value should be the same as the local size used in creating the 267092e8d321SLois Curfman McInnes y vector for the matrix-vector product y = Ax. 267192e8d321SLois Curfman McInnes . n - number of local columns (or PETSC_DECIDE to have calculated if N is given) 267292e8d321SLois Curfman McInnes This value should be the same as the local size used in creating the 267392e8d321SLois Curfman McInnes x vector for the matrix-vector product y = Ax. 2674be79a94dSBarry Smith . M - number of global rows (or PETSC_DETERMINE to have calculated if m is given) 2675be79a94dSBarry Smith . N - number of global columns (or PETSC_DETERMINE to have calculated if n is given) 267647a75d0bSBarry Smith . d_nz - number of nonzero blocks per block row in diagonal portion of local 267779bdfe76SSatish Balay submatrix (same for all local rows) 267847a75d0bSBarry Smith . d_nnz - array containing the number of nonzero blocks in the various block rows 267992e8d321SLois Curfman McInnes of the in diagonal portion of the local (possibly different for each block 2680db81eaa0SLois Curfman McInnes row) or PETSC_NULL. You must leave room for the diagonal entry even if it is zero. 268147a75d0bSBarry Smith . o_nz - number of nonzero blocks per block row in the off-diagonal portion of local 268279bdfe76SSatish Balay submatrix (same for all local rows). 268347a75d0bSBarry Smith - o_nnz - array containing the number of nonzero blocks in the various block rows of the 268492e8d321SLois Curfman McInnes off-diagonal portion of the local submatrix (possibly different for 268592e8d321SLois Curfman McInnes each block row) or PETSC_NULL. 268679bdfe76SSatish Balay 268779bdfe76SSatish Balay Output Parameter: 268879bdfe76SSatish Balay . A - the matrix 268979bdfe76SSatish Balay 2690db81eaa0SLois Curfman McInnes Options Database Keys: 26918c07d4e3SBarry Smith + -mat_block_size - size of the blocks to use 26928c07d4e3SBarry Smith - -mat_use_hash_table <fact> 26933ffaccefSLois Curfman McInnes 2694175b88e8SBarry Smith It is recommended that one use the MatCreate(), MatSetType() and/or MatSetFromOptions(), 2695ae1d86c5SBarry Smith MatXXXXSetPreallocation() paradgm instead of this routine directly. 2696175b88e8SBarry Smith [MatXXXXSetPreallocation() is, for example, MatSeqAIJSetPreallocation] 2697175b88e8SBarry Smith 2698b259b22eSLois Curfman McInnes Notes: 269949a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 270049a6f317SBarry Smith 270147a75d0bSBarry Smith A nonzero block is any block that as 1 or more nonzeros in it 270247a75d0bSBarry Smith 270379bdfe76SSatish Balay The user MUST specify either the local or global matrix dimensions 270479bdfe76SSatish Balay (possibly both). 270579bdfe76SSatish Balay 2706be79a94dSBarry Smith If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one processor 2707be79a94dSBarry Smith than it must be used on all processors that share the object for that argument. 2708be79a94dSBarry Smith 270979bdfe76SSatish Balay Storage Information: 271079bdfe76SSatish Balay For a square global matrix we define each processor's diagonal portion 271179bdfe76SSatish Balay to be its local rows and the corresponding columns (a square submatrix); 271279bdfe76SSatish Balay each processor's off-diagonal portion encompasses the remainder of the 271379bdfe76SSatish Balay local matrix (a rectangular submatrix). 271479bdfe76SSatish Balay 271579bdfe76SSatish Balay The user can specify preallocated storage for the diagonal part of 271679bdfe76SSatish Balay the local submatrix with either d_nz or d_nnz (not both). Set 271779bdfe76SSatish Balay d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic 271879bdfe76SSatish Balay memory allocation. Likewise, specify preallocated storage for the 271979bdfe76SSatish Balay off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 272079bdfe76SSatish Balay 272179bdfe76SSatish Balay Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 272279bdfe76SSatish Balay the figure below we depict these three local rows and all columns (0-11). 272379bdfe76SSatish Balay 2724db81eaa0SLois Curfman McInnes .vb 2725db81eaa0SLois Curfman McInnes 0 1 2 3 4 5 6 7 8 9 10 11 2726db81eaa0SLois Curfman McInnes ------------------- 2727db81eaa0SLois Curfman McInnes row 3 | o o o d d d o o o o o o 2728db81eaa0SLois Curfman McInnes row 4 | o o o d d d o o o o o o 2729db81eaa0SLois Curfman McInnes row 5 | o o o d d d o o o o o o 2730db81eaa0SLois Curfman McInnes ------------------- 2731db81eaa0SLois Curfman McInnes .ve 273279bdfe76SSatish Balay 273379bdfe76SSatish Balay Thus, any entries in the d locations are stored in the d (diagonal) 273479bdfe76SSatish Balay submatrix, and any entries in the o locations are stored in the 273579bdfe76SSatish Balay o (off-diagonal) submatrix. Note that the d and the o submatrices are 273657b952d6SSatish Balay stored simply in the MATSEQBAIJ format for compressed row storage. 273779bdfe76SSatish Balay 2738d64ed03dSBarry Smith Now d_nz should indicate the number of block nonzeros per row in the d matrix, 2739d64ed03dSBarry Smith and o_nz should indicate the number of block nonzeros per row in the o matrix. 274079bdfe76SSatish Balay In general, for PDE problems in which most nonzeros are near the diagonal, 274192e8d321SLois Curfman McInnes one expects d_nz >> o_nz. For large problems you MUST preallocate memory 274292e8d321SLois Curfman McInnes or you will get TERRIBLE performance; see the users' manual chapter on 27436da5968aSLois Curfman McInnes matrices. 274479bdfe76SSatish Balay 2745027ccd11SLois Curfman McInnes Level: intermediate 2746027ccd11SLois Curfman McInnes 274792e8d321SLois Curfman McInnes .keywords: matrix, block, aij, compressed row, sparse, parallel 274879bdfe76SSatish Balay 2749aac34f13SBarry Smith .seealso: MatCreate(), MatCreateSeqBAIJ(), MatSetValues(), MatCreateMPIBAIJ(), MatMPIBAIJSetPreallocation(), MatMPIBAIJSetPreallocationCSR() 275079bdfe76SSatish Balay @*/ 2751be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreateMPIBAIJ(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[],Mat *A) 275279bdfe76SSatish Balay { 27536849ba73SBarry Smith PetscErrorCode ierr; 2754b24ad042SBarry Smith PetscMPIInt size; 275579bdfe76SSatish Balay 2756d64ed03dSBarry Smith PetscFunctionBegin; 2757f69a0ea3SMatthew Knepley ierr = MatCreate(comm,A);CHKERRQ(ierr); 2758f69a0ea3SMatthew Knepley ierr = MatSetSizes(*A,m,n,M,N);CHKERRQ(ierr); 2759d132466eSBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 2760273d9f13SBarry Smith if (size > 1) { 2761273d9f13SBarry Smith ierr = MatSetType(*A,MATMPIBAIJ);CHKERRQ(ierr); 2762273d9f13SBarry Smith ierr = MatMPIBAIJSetPreallocation(*A,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr); 2763273d9f13SBarry Smith } else { 2764273d9f13SBarry Smith ierr = MatSetType(*A,MATSEQBAIJ);CHKERRQ(ierr); 2765273d9f13SBarry Smith ierr = MatSeqBAIJSetPreallocation(*A,bs,d_nz,d_nnz);CHKERRQ(ierr); 27663914022bSBarry Smith } 27673a40ed3dSBarry Smith PetscFunctionReturn(0); 276879bdfe76SSatish Balay } 2769026e39d0SSatish Balay 27704a2ae208SSatish Balay #undef __FUNCT__ 27714a2ae208SSatish Balay #define __FUNCT__ "MatDuplicate_MPIBAIJ" 27726849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIBAIJ(Mat matin,MatDuplicateOption cpvalues,Mat *newmat) 27730ac07820SSatish Balay { 27740ac07820SSatish Balay Mat mat; 27750ac07820SSatish Balay Mat_MPIBAIJ *a,*oldmat = (Mat_MPIBAIJ*)matin->data; 2776dfbe8321SBarry Smith PetscErrorCode ierr; 2777b24ad042SBarry Smith PetscInt len=0; 27780ac07820SSatish Balay 2779d64ed03dSBarry Smith PetscFunctionBegin; 27800ac07820SSatish Balay *newmat = 0; 27817adad957SLisandro Dalcin ierr = MatCreate(((PetscObject)matin)->comm,&mat);CHKERRQ(ierr); 2782d0f46423SBarry Smith ierr = MatSetSizes(mat,matin->rmap->n,matin->cmap->n,matin->rmap->N,matin->cmap->N);CHKERRQ(ierr); 27837adad957SLisandro Dalcin ierr = MatSetType(mat,((PetscObject)matin)->type_name);CHKERRQ(ierr); 27841d5dac46SHong Zhang ierr = PetscMemcpy(mat->ops,matin->ops,sizeof(struct _MatOps));CHKERRQ(ierr); 27857fff6886SHong Zhang 27864beb1cfeSHong Zhang mat->factor = matin->factor; 2787273d9f13SBarry Smith mat->preallocated = PETSC_TRUE; 27880ac07820SSatish Balay mat->assembled = PETSC_TRUE; 27897fff6886SHong Zhang mat->insertmode = NOT_SET_VALUES; 27907fff6886SHong Zhang 2791273d9f13SBarry Smith a = (Mat_MPIBAIJ*)mat->data; 2792d0f46423SBarry Smith mat->rmap->bs = matin->rmap->bs; 27930ac07820SSatish Balay a->bs2 = oldmat->bs2; 27940ac07820SSatish Balay a->mbs = oldmat->mbs; 27950ac07820SSatish Balay a->nbs = oldmat->nbs; 27960ac07820SSatish Balay a->Mbs = oldmat->Mbs; 27970ac07820SSatish Balay a->Nbs = oldmat->Nbs; 27980ac07820SSatish Balay 2799d0f46423SBarry Smith ierr = PetscMapCopy(((PetscObject)matin)->comm,matin->rmap,mat->rmap);CHKERRQ(ierr); 2800d0f46423SBarry Smith ierr = PetscMapCopy(((PetscObject)matin)->comm,matin->cmap,mat->cmap);CHKERRQ(ierr); 2801899cda47SBarry Smith 28020ac07820SSatish Balay a->size = oldmat->size; 28030ac07820SSatish Balay a->rank = oldmat->rank; 2804aef5e8e0SSatish Balay a->donotstash = oldmat->donotstash; 2805aef5e8e0SSatish Balay a->roworiented = oldmat->roworiented; 2806aef5e8e0SSatish Balay a->rowindices = 0; 28070ac07820SSatish Balay a->rowvalues = 0; 28080ac07820SSatish Balay a->getrowactive = PETSC_FALSE; 280930793edcSSatish Balay a->barray = 0; 2810899cda47SBarry Smith a->rstartbs = oldmat->rstartbs; 2811899cda47SBarry Smith a->rendbs = oldmat->rendbs; 2812899cda47SBarry Smith a->cstartbs = oldmat->cstartbs; 2813899cda47SBarry Smith a->cendbs = oldmat->cendbs; 28140ac07820SSatish Balay 2815133cdb44SSatish Balay /* hash table stuff */ 2816133cdb44SSatish Balay a->ht = 0; 2817133cdb44SSatish Balay a->hd = 0; 2818133cdb44SSatish Balay a->ht_size = 0; 2819133cdb44SSatish Balay a->ht_flag = oldmat->ht_flag; 282025fdafccSSatish Balay a->ht_fact = oldmat->ht_fact; 2821133cdb44SSatish Balay a->ht_total_ct = 0; 2822133cdb44SSatish Balay a->ht_insert_ct = 0; 2823133cdb44SSatish Balay 2824899cda47SBarry Smith ierr = PetscMemcpy(a->rangebs,oldmat->rangebs,(a->size+1)*sizeof(PetscInt));CHKERRQ(ierr); 28257adad957SLisandro Dalcin ierr = MatStashCreate_Private(((PetscObject)matin)->comm,1,&mat->stash);CHKERRQ(ierr); 2826d0f46423SBarry Smith ierr = MatStashCreate_Private(((PetscObject)matin)->comm,matin->rmap->bs,&mat->bstash);CHKERRQ(ierr); 28270ac07820SSatish Balay if (oldmat->colmap) { 2828aa482453SBarry Smith #if defined (PETSC_USE_CTABLE) 28290f5bd95cSBarry Smith ierr = PetscTableCreateCopy(oldmat->colmap,&a->colmap);CHKERRQ(ierr); 283048e59246SSatish Balay #else 2831b24ad042SBarry Smith ierr = PetscMalloc((a->Nbs)*sizeof(PetscInt),&a->colmap);CHKERRQ(ierr); 283252e6d16bSBarry Smith ierr = PetscLogObjectMemory(mat,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr); 2833b24ad042SBarry Smith ierr = PetscMemcpy(a->colmap,oldmat->colmap,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr); 283448e59246SSatish Balay #endif 28350ac07820SSatish Balay } else a->colmap = 0; 28364beb1cfeSHong Zhang 28370ac07820SSatish Balay if (oldmat->garray && (len = ((Mat_SeqBAIJ*)(oldmat->B->data))->nbs)) { 2838b24ad042SBarry Smith ierr = PetscMalloc(len*sizeof(PetscInt),&a->garray);CHKERRQ(ierr); 283952e6d16bSBarry Smith ierr = PetscLogObjectMemory(mat,len*sizeof(PetscInt));CHKERRQ(ierr); 2840b24ad042SBarry Smith ierr = PetscMemcpy(a->garray,oldmat->garray,len*sizeof(PetscInt));CHKERRQ(ierr); 28410ac07820SSatish Balay } else a->garray = 0; 28420ac07820SSatish Balay 28430ac07820SSatish Balay ierr = VecDuplicate(oldmat->lvec,&a->lvec);CHKERRQ(ierr); 284452e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->lvec);CHKERRQ(ierr); 28450ac07820SSatish Balay ierr = VecScatterCopy(oldmat->Mvctx,&a->Mvctx);CHKERRQ(ierr); 284652e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->Mvctx);CHKERRQ(ierr); 28477fff6886SHong Zhang 28482e8a6d31SBarry Smith ierr = MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr); 284952e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->A);CHKERRQ(ierr); 28502e8a6d31SBarry Smith ierr = MatDuplicate(oldmat->B,cpvalues,&a->B);CHKERRQ(ierr); 285152e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->B);CHKERRQ(ierr); 28527adad957SLisandro Dalcin ierr = PetscFListDuplicate(((PetscObject)matin)->qlist,&((PetscObject)mat)->qlist);CHKERRQ(ierr); 28530ac07820SSatish Balay *newmat = mat; 28544beb1cfeSHong Zhang 28553a40ed3dSBarry Smith PetscFunctionReturn(0); 28560ac07820SSatish Balay } 285757b952d6SSatish Balay 2858e090d566SSatish Balay #include "petscsys.h" 285957b952d6SSatish Balay 28604a2ae208SSatish Balay #undef __FUNCT__ 28614a2ae208SSatish Balay #define __FUNCT__ "MatLoad_MPIBAIJ" 2862a313700dSBarry Smith PetscErrorCode MatLoad_MPIBAIJ(PetscViewer viewer, const MatType type,Mat *newmat) 286357b952d6SSatish Balay { 286457b952d6SSatish Balay Mat A; 28656849ba73SBarry Smith PetscErrorCode ierr; 2866b24ad042SBarry Smith int fd; 2867b24ad042SBarry Smith PetscInt i,nz,j,rstart,rend; 286887828ca2SBarry Smith PetscScalar *vals,*buf; 286957b952d6SSatish Balay MPI_Comm comm = ((PetscObject)viewer)->comm; 287057b952d6SSatish Balay MPI_Status status; 2871b24ad042SBarry Smith PetscMPIInt rank,size,maxnz; 2872b24ad042SBarry Smith PetscInt header[4],*rowlengths = 0,M,N,m,*rowners,*cols; 2873910ba992SMatthew Knepley PetscInt *locrowlens = PETSC_NULL,*procsnz = PETSC_NULL,*browners = PETSC_NULL; 2874167e7480SBarry Smith PetscInt jj,*mycols,*ibuf,bs=1,Mbs,mbs,extra_rows,mmax; 2875dc231df0SBarry Smith PetscMPIInt tag = ((PetscObject)viewer)->tag; 2876910ba992SMatthew Knepley PetscInt *dlens = PETSC_NULL,*odlens = PETSC_NULL,*mask = PETSC_NULL,*masked1 = PETSC_NULL,*masked2 = PETSC_NULL,rowcount,odcount; 2877dc231df0SBarry Smith PetscInt dcount,kmax,k,nzcount,tmp,mend; 287857b952d6SSatish Balay 2879d64ed03dSBarry Smith PetscFunctionBegin; 288077925062SSatish Balay ierr = PetscOptionsBegin(comm,PETSC_NULL,"Options for loading MPIBAIJ matrix 2","Mat");CHKERRQ(ierr); 28818c07d4e3SBarry Smith ierr = PetscOptionsInt("-matload_block_size","Set the blocksize used to store the matrix","MatLoad",bs,&bs,PETSC_NULL);CHKERRQ(ierr); 28828c07d4e3SBarry Smith ierr = PetscOptionsEnd();CHKERRQ(ierr); 288357b952d6SSatish Balay 2884d132466eSBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 2885d132466eSBarry Smith ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 288657b952d6SSatish Balay if (!rank) { 2887b0a32e0cSBarry Smith ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr); 2888e5638eb3SBarry Smith ierr = PetscBinaryRead(fd,(char *)header,4,PETSC_INT);CHKERRQ(ierr); 2889552e946dSBarry Smith if (header[0] != MAT_FILE_COOKIE) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"not matrix object"); 28906c5fab8fSBarry Smith } 2891d64ed03dSBarry Smith 2892b24ad042SBarry Smith ierr = MPI_Bcast(header+1,3,MPIU_INT,0,comm);CHKERRQ(ierr); 289357b952d6SSatish Balay M = header[1]; N = header[2]; 289457b952d6SSatish Balay 289529bbc08cSBarry Smith if (M != N) SETERRQ(PETSC_ERR_SUP,"Can only do square matrices"); 289657b952d6SSatish Balay 289757b952d6SSatish Balay /* 289857b952d6SSatish Balay This code adds extra rows to make sure the number of rows is 289957b952d6SSatish Balay divisible by the blocksize 290057b952d6SSatish Balay */ 290157b952d6SSatish Balay Mbs = M/bs; 2902dc231df0SBarry Smith extra_rows = bs - M + bs*Mbs; 290357b952d6SSatish Balay if (extra_rows == bs) extra_rows = 0; 290457b952d6SSatish Balay else Mbs++; 290557b952d6SSatish Balay if (extra_rows && !rank) { 29061e2582c4SBarry Smith ierr = PetscInfo(viewer,"Padding loaded matrix to match blocksize\n");CHKERRQ(ierr); 290757b952d6SSatish Balay } 2908537820f0SBarry Smith 290957b952d6SSatish Balay /* determine ownership of all rows */ 291057b952d6SSatish Balay mbs = Mbs/size + ((Mbs % size) > rank); 291157b952d6SSatish Balay m = mbs*bs; 2912dc231df0SBarry Smith ierr = PetscMalloc2(size+1,PetscInt,&rowners,size+1,PetscInt,&browners);CHKERRQ(ierr); 2913b24ad042SBarry Smith ierr = MPI_Allgather(&mbs,1,MPIU_INT,rowners+1,1,MPIU_INT,comm);CHKERRQ(ierr); 2914167e7480SBarry Smith 2915167e7480SBarry Smith /* process 0 needs enough room for process with most rows */ 2916167e7480SBarry Smith if (!rank) { 2917167e7480SBarry Smith mmax = rowners[1]; 2918167e7480SBarry Smith for (i=2; i<size; i++) { 2919167e7480SBarry Smith mmax = PetscMax(mmax,rowners[i]); 2920167e7480SBarry Smith } 2921ca02efcfSSatish Balay mmax*=bs; 2922167e7480SBarry Smith } else mmax = m; 2923167e7480SBarry Smith 292457b952d6SSatish Balay rowners[0] = 0; 2925cee3aa6bSSatish Balay for (i=2; i<=size; i++) rowners[i] += rowners[i-1]; 2926cee3aa6bSSatish Balay for (i=0; i<=size; i++) browners[i] = rowners[i]*bs; 292757b952d6SSatish Balay rstart = rowners[rank]; 292857b952d6SSatish Balay rend = rowners[rank+1]; 292957b952d6SSatish Balay 293057b952d6SSatish Balay /* distribute row lengths to all processors */ 293119c38ff2SBarry Smith ierr = PetscMalloc((mmax+1)*sizeof(PetscInt),&locrowlens);CHKERRQ(ierr); 293257b952d6SSatish Balay if (!rank) { 2933dc231df0SBarry Smith mend = m; 2934dc231df0SBarry Smith if (size == 1) mend = mend - extra_rows; 2935dc231df0SBarry Smith ierr = PetscBinaryRead(fd,locrowlens,mend,PETSC_INT);CHKERRQ(ierr); 2936dc231df0SBarry Smith for (j=mend; j<m; j++) locrowlens[j] = 1; 2937dc231df0SBarry Smith ierr = PetscMalloc(m*sizeof(PetscInt),&rowlengths);CHKERRQ(ierr); 2938b24ad042SBarry Smith ierr = PetscMalloc(size*sizeof(PetscInt),&procsnz);CHKERRQ(ierr); 2939b24ad042SBarry Smith ierr = PetscMemzero(procsnz,size*sizeof(PetscInt));CHKERRQ(ierr); 2940dc231df0SBarry Smith for (j=0; j<m; j++) { 2941dc231df0SBarry Smith procsnz[0] += locrowlens[j]; 2942dc231df0SBarry Smith } 2943dc231df0SBarry Smith for (i=1; i<size; i++) { 2944dc231df0SBarry Smith mend = browners[i+1] - browners[i]; 2945dc231df0SBarry Smith if (i == size-1) mend = mend - extra_rows; 2946dc231df0SBarry Smith ierr = PetscBinaryRead(fd,rowlengths,mend,PETSC_INT);CHKERRQ(ierr); 2947dc231df0SBarry Smith for (j=mend; j<browners[i+1] - browners[i]; j++) rowlengths[j] = 1; 2948dc231df0SBarry Smith /* calculate the number of nonzeros on each processor */ 2949dc231df0SBarry Smith for (j=0; j<browners[i+1]-browners[i]; j++) { 295057b952d6SSatish Balay procsnz[i] += rowlengths[j]; 295157b952d6SSatish Balay } 2952dc231df0SBarry Smith ierr = MPI_Send(rowlengths,browners[i+1]-browners[i],MPIU_INT,i,tag,comm);CHKERRQ(ierr); 295357b952d6SSatish Balay } 2954606d414cSSatish Balay ierr = PetscFree(rowlengths);CHKERRQ(ierr); 2955dc231df0SBarry Smith } else { 2956dc231df0SBarry Smith ierr = MPI_Recv(locrowlens,m,MPIU_INT,0,tag,comm,&status);CHKERRQ(ierr); 2957dc231df0SBarry Smith } 295857b952d6SSatish Balay 2959dc231df0SBarry Smith if (!rank) { 296057b952d6SSatish Balay /* determine max buffer needed and allocate it */ 29618a8e0b3aSBarry Smith maxnz = procsnz[0]; 2962cdc0ba36SBarry Smith for (i=1; i<size; i++) { 296357b952d6SSatish Balay maxnz = PetscMax(maxnz,procsnz[i]); 296457b952d6SSatish Balay } 2965b24ad042SBarry Smith ierr = PetscMalloc(maxnz*sizeof(PetscInt),&cols);CHKERRQ(ierr); 296657b952d6SSatish Balay 296757b952d6SSatish Balay /* read in my part of the matrix column indices */ 296857b952d6SSatish Balay nz = procsnz[0]; 296919c38ff2SBarry Smith ierr = PetscMalloc((nz+1)*sizeof(PetscInt),&ibuf);CHKERRQ(ierr); 297057b952d6SSatish Balay mycols = ibuf; 2971cee3aa6bSSatish Balay if (size == 1) nz -= extra_rows; 2972e5638eb3SBarry Smith ierr = PetscBinaryRead(fd,mycols,nz,PETSC_INT);CHKERRQ(ierr); 2973cee3aa6bSSatish Balay if (size == 1) for (i=0; i< extra_rows; i++) { mycols[nz+i] = M+i; } 2974cee3aa6bSSatish Balay 297557b952d6SSatish Balay /* read in every ones (except the last) and ship off */ 297657b952d6SSatish Balay for (i=1; i<size-1; i++) { 297757b952d6SSatish Balay nz = procsnz[i]; 2978e5638eb3SBarry Smith ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr); 2979b24ad042SBarry Smith ierr = MPI_Send(cols,nz,MPIU_INT,i,tag,comm);CHKERRQ(ierr); 298057b952d6SSatish Balay } 298157b952d6SSatish Balay /* read in the stuff for the last proc */ 298257b952d6SSatish Balay if (size != 1) { 298357b952d6SSatish Balay nz = procsnz[size-1] - extra_rows; /* the extra rows are not on the disk */ 2984e5638eb3SBarry Smith ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr); 298557b952d6SSatish Balay for (i=0; i<extra_rows; i++) cols[nz+i] = M+i; 2986b24ad042SBarry Smith ierr = MPI_Send(cols,nz+extra_rows,MPIU_INT,size-1,tag,comm);CHKERRQ(ierr); 298757b952d6SSatish Balay } 2988606d414cSSatish Balay ierr = PetscFree(cols);CHKERRQ(ierr); 2989d64ed03dSBarry Smith } else { 299057b952d6SSatish Balay /* determine buffer space needed for message */ 299157b952d6SSatish Balay nz = 0; 299257b952d6SSatish Balay for (i=0; i<m; i++) { 299357b952d6SSatish Balay nz += locrowlens[i]; 299457b952d6SSatish Balay } 299519c38ff2SBarry Smith ierr = PetscMalloc((nz+1)*sizeof(PetscInt),&ibuf);CHKERRQ(ierr); 299657b952d6SSatish Balay mycols = ibuf; 299757b952d6SSatish Balay /* receive message of column indices*/ 2998b24ad042SBarry Smith ierr = MPI_Recv(mycols,nz,MPIU_INT,0,tag,comm,&status);CHKERRQ(ierr); 2999b24ad042SBarry Smith ierr = MPI_Get_count(&status,MPIU_INT,&maxnz);CHKERRQ(ierr); 300029bbc08cSBarry Smith if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 300157b952d6SSatish Balay } 300257b952d6SSatish Balay 300357b952d6SSatish Balay /* loop over local rows, determining number of off diagonal entries */ 3004dc231df0SBarry Smith ierr = PetscMalloc2(rend-rstart,PetscInt,&dlens,rend-rstart,PetscInt,&odlens);CHKERRQ(ierr); 3005dc231df0SBarry Smith ierr = PetscMalloc3(Mbs,PetscInt,&mask,Mbs,PetscInt,&masked1,Mbs,PetscInt,&masked2);CHKERRQ(ierr); 3006dc231df0SBarry Smith ierr = PetscMemzero(mask,Mbs*sizeof(PetscInt));CHKERRQ(ierr); 3007dc231df0SBarry Smith ierr = PetscMemzero(masked1,Mbs*sizeof(PetscInt));CHKERRQ(ierr); 3008dc231df0SBarry Smith ierr = PetscMemzero(masked2,Mbs*sizeof(PetscInt));CHKERRQ(ierr); 300957b952d6SSatish Balay rowcount = 0; nzcount = 0; 301057b952d6SSatish Balay for (i=0; i<mbs; i++) { 301157b952d6SSatish Balay dcount = 0; 301257b952d6SSatish Balay odcount = 0; 301357b952d6SSatish Balay for (j=0; j<bs; j++) { 301457b952d6SSatish Balay kmax = locrowlens[rowcount]; 301557b952d6SSatish Balay for (k=0; k<kmax; k++) { 301657b952d6SSatish Balay tmp = mycols[nzcount++]/bs; 301757b952d6SSatish Balay if (!mask[tmp]) { 301857b952d6SSatish Balay mask[tmp] = 1; 301957b952d6SSatish Balay if (tmp < rstart || tmp >= rend) masked2[odcount++] = tmp; 302057b952d6SSatish Balay else masked1[dcount++] = tmp; 302157b952d6SSatish Balay } 302257b952d6SSatish Balay } 302357b952d6SSatish Balay rowcount++; 302457b952d6SSatish Balay } 3025cee3aa6bSSatish Balay 302657b952d6SSatish Balay dlens[i] = dcount; 302757b952d6SSatish Balay odlens[i] = odcount; 3028cee3aa6bSSatish Balay 302957b952d6SSatish Balay /* zero out the mask elements we set */ 303057b952d6SSatish Balay for (j=0; j<dcount; j++) mask[masked1[j]] = 0; 303157b952d6SSatish Balay for (j=0; j<odcount; j++) mask[masked2[j]] = 0; 303257b952d6SSatish Balay } 3033cee3aa6bSSatish Balay 303457b952d6SSatish Balay /* create our matrix */ 3035f69a0ea3SMatthew Knepley ierr = MatCreate(comm,&A);CHKERRQ(ierr); 3036f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,m,m,M+extra_rows,N+extra_rows);CHKERRQ(ierr); 303778ae41b4SKris Buschelman ierr = MatSetType(A,type);CHKERRQ(ierr) 303878ae41b4SKris Buschelman ierr = MatMPIBAIJSetPreallocation(A,bs,0,dlens,0,odlens);CHKERRQ(ierr); 303978ae41b4SKris Buschelman 304057b952d6SSatish Balay if (!rank) { 304119c38ff2SBarry Smith ierr = PetscMalloc((maxnz+1)*sizeof(PetscScalar),&buf);CHKERRQ(ierr); 304257b952d6SSatish Balay /* read in my part of the matrix numerical values */ 304357b952d6SSatish Balay nz = procsnz[0]; 304457b952d6SSatish Balay vals = buf; 3045cee3aa6bSSatish Balay mycols = ibuf; 3046cee3aa6bSSatish Balay if (size == 1) nz -= extra_rows; 3047e5638eb3SBarry Smith ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 3048cee3aa6bSSatish Balay if (size == 1) for (i=0; i< extra_rows; i++) { vals[nz+i] = 1.0; } 3049537820f0SBarry Smith 305057b952d6SSatish Balay /* insert into matrix */ 305157b952d6SSatish Balay jj = rstart*bs; 305257b952d6SSatish Balay for (i=0; i<m; i++) { 3053dc231df0SBarry Smith ierr = MatSetValues_MPIBAIJ(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr); 305457b952d6SSatish Balay mycols += locrowlens[i]; 305557b952d6SSatish Balay vals += locrowlens[i]; 305657b952d6SSatish Balay jj++; 305757b952d6SSatish Balay } 305857b952d6SSatish Balay /* read in other processors (except the last one) and ship out */ 305957b952d6SSatish Balay for (i=1; i<size-1; i++) { 306057b952d6SSatish Balay nz = procsnz[i]; 306157b952d6SSatish Balay vals = buf; 3062e5638eb3SBarry Smith ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 30637adad957SLisandro Dalcin ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,((PetscObject)A)->tag,comm);CHKERRQ(ierr); 306457b952d6SSatish Balay } 306557b952d6SSatish Balay /* the last proc */ 306657b952d6SSatish Balay if (size != 1){ 306757b952d6SSatish Balay nz = procsnz[i] - extra_rows; 3068cee3aa6bSSatish Balay vals = buf; 3069e5638eb3SBarry Smith ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 307057b952d6SSatish Balay for (i=0; i<extra_rows; i++) vals[nz+i] = 1.0; 30717adad957SLisandro Dalcin ierr = MPI_Send(vals,nz+extra_rows,MPIU_SCALAR,size-1,((PetscObject)A)->tag,comm);CHKERRQ(ierr); 307257b952d6SSatish Balay } 3073606d414cSSatish Balay ierr = PetscFree(procsnz);CHKERRQ(ierr); 3074d64ed03dSBarry Smith } else { 307557b952d6SSatish Balay /* receive numeric values */ 307619c38ff2SBarry Smith ierr = PetscMalloc((nz+1)*sizeof(PetscScalar),&buf);CHKERRQ(ierr); 307757b952d6SSatish Balay 307857b952d6SSatish Balay /* receive message of values*/ 307957b952d6SSatish Balay vals = buf; 3080cee3aa6bSSatish Balay mycols = ibuf; 30817adad957SLisandro Dalcin ierr = MPI_Recv(vals,nz,MPIU_SCALAR,0,((PetscObject)A)->tag,comm,&status);CHKERRQ(ierr); 3082ca161407SBarry Smith ierr = MPI_Get_count(&status,MPIU_SCALAR,&maxnz);CHKERRQ(ierr); 308329bbc08cSBarry Smith if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 308457b952d6SSatish Balay 308557b952d6SSatish Balay /* insert into matrix */ 308657b952d6SSatish Balay jj = rstart*bs; 3087cee3aa6bSSatish Balay for (i=0; i<m; i++) { 3088dc231df0SBarry Smith ierr = MatSetValues_MPIBAIJ(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr); 308957b952d6SSatish Balay mycols += locrowlens[i]; 309057b952d6SSatish Balay vals += locrowlens[i]; 309157b952d6SSatish Balay jj++; 309257b952d6SSatish Balay } 309357b952d6SSatish Balay } 3094606d414cSSatish Balay ierr = PetscFree(locrowlens);CHKERRQ(ierr); 3095606d414cSSatish Balay ierr = PetscFree(buf);CHKERRQ(ierr); 3096606d414cSSatish Balay ierr = PetscFree(ibuf);CHKERRQ(ierr); 3097dc231df0SBarry Smith ierr = PetscFree2(rowners,browners);CHKERRQ(ierr); 3098dc231df0SBarry Smith ierr = PetscFree2(dlens,odlens);CHKERRQ(ierr); 3099dc231df0SBarry Smith ierr = PetscFree3(mask,masked1,masked2);CHKERRQ(ierr); 31006d4a8577SBarry Smith ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 31016d4a8577SBarry Smith ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 310278ae41b4SKris Buschelman 310378ae41b4SKris Buschelman *newmat = A; 31043a40ed3dSBarry Smith PetscFunctionReturn(0); 310557b952d6SSatish Balay } 310657b952d6SSatish Balay 31074a2ae208SSatish Balay #undef __FUNCT__ 31084a2ae208SSatish Balay #define __FUNCT__ "MatMPIBAIJSetHashTableFactor" 3109133cdb44SSatish Balay /*@ 3110133cdb44SSatish Balay MatMPIBAIJSetHashTableFactor - Sets the factor required to compute the size of the HashTable. 3111133cdb44SSatish Balay 3112133cdb44SSatish Balay Input Parameters: 3113133cdb44SSatish Balay . mat - the matrix 3114133cdb44SSatish Balay . fact - factor 3115133cdb44SSatish Balay 3116fee21e36SBarry Smith Collective on Mat 3117fee21e36SBarry Smith 31188c890885SBarry Smith Level: advanced 31198c890885SBarry Smith 3120133cdb44SSatish Balay Notes: 31218c07d4e3SBarry Smith This can also be set by the command line option: -mat_use_hash_table <fact> 3122133cdb44SSatish Balay 3123133cdb44SSatish Balay .keywords: matrix, hashtable, factor, HT 3124133cdb44SSatish Balay 3125133cdb44SSatish Balay .seealso: MatSetOption() 3126133cdb44SSatish Balay @*/ 3127be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPIBAIJSetHashTableFactor(Mat mat,PetscReal fact) 3128133cdb44SSatish Balay { 3129dfbe8321SBarry Smith PetscErrorCode ierr,(*f)(Mat,PetscReal); 31305bf65638SKris Buschelman 31315bf65638SKris Buschelman PetscFunctionBegin; 31325bf65638SKris Buschelman ierr = PetscObjectQueryFunction((PetscObject)mat,"MatSetHashTableFactor_C",(void (**)(void))&f);CHKERRQ(ierr); 31335bf65638SKris Buschelman if (f) { 31345bf65638SKris Buschelman ierr = (*f)(mat,fact);CHKERRQ(ierr); 31355bf65638SKris Buschelman } 31365bf65638SKris Buschelman PetscFunctionReturn(0); 31375bf65638SKris Buschelman } 31385bf65638SKris Buschelman 3139be1d678aSKris Buschelman EXTERN_C_BEGIN 31405bf65638SKris Buschelman #undef __FUNCT__ 31415bf65638SKris Buschelman #define __FUNCT__ "MatSetHashTableFactor_MPIBAIJ" 3142be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatSetHashTableFactor_MPIBAIJ(Mat mat,PetscReal fact) 31435bf65638SKris Buschelman { 314425fdafccSSatish Balay Mat_MPIBAIJ *baij; 3145133cdb44SSatish Balay 3146133cdb44SSatish Balay PetscFunctionBegin; 3147133cdb44SSatish Balay baij = (Mat_MPIBAIJ*)mat->data; 3148133cdb44SSatish Balay baij->ht_fact = fact; 3149133cdb44SSatish Balay PetscFunctionReturn(0); 3150133cdb44SSatish Balay } 3151be1d678aSKris Buschelman EXTERN_C_END 3152f2a5309cSSatish Balay 31534a2ae208SSatish Balay #undef __FUNCT__ 31544a2ae208SSatish Balay #define __FUNCT__ "MatMPIBAIJGetSeqBAIJ" 3155be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPIBAIJGetSeqBAIJ(Mat A,Mat *Ad,Mat *Ao,PetscInt *colmap[]) 3156f2a5309cSSatish Balay { 3157f2a5309cSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 3158f2a5309cSSatish Balay PetscFunctionBegin; 3159f2a5309cSSatish Balay *Ad = a->A; 3160f2a5309cSSatish Balay *Ao = a->B; 3161195d93cdSBarry Smith *colmap = a->garray; 3162f2a5309cSSatish Balay PetscFunctionReturn(0); 3163f2a5309cSSatish Balay } 316485535b8eSBarry Smith 316585535b8eSBarry Smith /* 316685535b8eSBarry Smith Special version for direct calls from Fortran (to eliminate two function call overheads 316785535b8eSBarry Smith */ 316885535b8eSBarry Smith #if defined(PETSC_HAVE_FORTRAN_CAPS) 316985535b8eSBarry Smith #define matmpibaijsetvaluesblocked_ MATMPIBAIJSETVALUESBLOCKED 317085535b8eSBarry Smith #elif !defined(PETSC_HAVE_FORTRAN_UNDERSCORE) 317185535b8eSBarry Smith #define matmpibaijsetvaluesblocked_ matmpibaijsetvaluesblocked 317285535b8eSBarry Smith #endif 317385535b8eSBarry Smith 317485535b8eSBarry Smith #undef __FUNCT__ 317585535b8eSBarry Smith #define __FUNCT__ "matmpibiajsetvaluesblocked" 317685535b8eSBarry Smith /*@C 317785535b8eSBarry Smith MatMPIBAIJSetValuesBlocked - Direct Fortran call to replace call to MatSetValuesBlocked() 317885535b8eSBarry Smith 317985535b8eSBarry Smith Collective on Mat 318085535b8eSBarry Smith 318185535b8eSBarry Smith Input Parameters: 318285535b8eSBarry Smith + mat - the matrix 318385535b8eSBarry Smith . min - number of input rows 318485535b8eSBarry Smith . im - input rows 318585535b8eSBarry Smith . nin - number of input columns 318685535b8eSBarry Smith . in - input columns 318785535b8eSBarry Smith . v - numerical values input 318885535b8eSBarry Smith - addvin - INSERT_VALUES or ADD_VALUES 318985535b8eSBarry Smith 319085535b8eSBarry Smith Notes: This has a complete copy of MatSetValuesBlocked_MPIBAIJ() which is terrible code un-reuse. 319185535b8eSBarry Smith 319285535b8eSBarry Smith Level: advanced 319385535b8eSBarry Smith 319485535b8eSBarry Smith .seealso: MatSetValuesBlocked() 319585535b8eSBarry Smith @*/ 319685535b8eSBarry Smith PetscErrorCode matmpibaijsetvaluesblocked_(Mat *matin,PetscInt *min,const PetscInt im[],PetscInt *nin,const PetscInt in[],const MatScalar v[],InsertMode *addvin) 319785535b8eSBarry Smith { 319885535b8eSBarry Smith /* convert input arguments to C version */ 319985535b8eSBarry Smith Mat mat = *matin; 320085535b8eSBarry Smith PetscInt m = *min, n = *nin; 320185535b8eSBarry Smith InsertMode addv = *addvin; 320285535b8eSBarry Smith 320385535b8eSBarry Smith Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 320485535b8eSBarry Smith const MatScalar *value; 320585535b8eSBarry Smith MatScalar *barray=baij->barray; 320685535b8eSBarry Smith PetscTruth roworiented = baij->roworiented; 320785535b8eSBarry Smith PetscErrorCode ierr; 320885535b8eSBarry Smith PetscInt i,j,ii,jj,row,col,rstart=baij->rstartbs; 320985535b8eSBarry Smith PetscInt rend=baij->rendbs,cstart=baij->cstartbs,stepval; 3210d0f46423SBarry Smith PetscInt cend=baij->cendbs,bs=mat->rmap->bs,bs2=baij->bs2; 321185535b8eSBarry Smith 321285535b8eSBarry Smith PetscFunctionBegin; 321385535b8eSBarry Smith /* tasks normally handled by MatSetValuesBlocked() */ 321485535b8eSBarry Smith if (mat->insertmode == NOT_SET_VALUES) { 321585535b8eSBarry Smith mat->insertmode = addv; 321685535b8eSBarry Smith } 321785535b8eSBarry Smith #if defined(PETSC_USE_DEBUG) 321885535b8eSBarry Smith else if (mat->insertmode != addv) { 321985535b8eSBarry Smith SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Cannot mix add values and insert values"); 322085535b8eSBarry Smith } 322185535b8eSBarry Smith if (mat->factor) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Not for factored matrix"); 322285535b8eSBarry Smith #endif 322385535b8eSBarry Smith if (mat->assembled) { 322485535b8eSBarry Smith mat->was_assembled = PETSC_TRUE; 322585535b8eSBarry Smith mat->assembled = PETSC_FALSE; 322685535b8eSBarry Smith } 322785535b8eSBarry Smith ierr = PetscLogEventBegin(MAT_SetValues,mat,0,0,0);CHKERRQ(ierr); 322885535b8eSBarry Smith 322985535b8eSBarry Smith 323085535b8eSBarry Smith if(!barray) { 323185535b8eSBarry Smith ierr = PetscMalloc(bs2*sizeof(MatScalar),&barray);CHKERRQ(ierr); 323285535b8eSBarry Smith baij->barray = barray; 323385535b8eSBarry Smith } 323485535b8eSBarry Smith 323585535b8eSBarry Smith if (roworiented) { 323685535b8eSBarry Smith stepval = (n-1)*bs; 323785535b8eSBarry Smith } else { 323885535b8eSBarry Smith stepval = (m-1)*bs; 323985535b8eSBarry Smith } 324085535b8eSBarry Smith for (i=0; i<m; i++) { 324185535b8eSBarry Smith if (im[i] < 0) continue; 324285535b8eSBarry Smith #if defined(PETSC_USE_DEBUG) 324385535b8eSBarry Smith if (im[i] >= baij->Mbs) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large, row %D max %D",im[i],baij->Mbs-1); 324485535b8eSBarry Smith #endif 324585535b8eSBarry Smith if (im[i] >= rstart && im[i] < rend) { 324685535b8eSBarry Smith row = im[i] - rstart; 324785535b8eSBarry Smith for (j=0; j<n; j++) { 324885535b8eSBarry Smith /* If NumCol = 1 then a copy is not required */ 324985535b8eSBarry Smith if ((roworiented) && (n == 1)) { 325085535b8eSBarry Smith barray = (MatScalar*)v + i*bs2; 325185535b8eSBarry Smith } else if((!roworiented) && (m == 1)) { 325285535b8eSBarry Smith barray = (MatScalar*)v + j*bs2; 325385535b8eSBarry Smith } else { /* Here a copy is required */ 325485535b8eSBarry Smith if (roworiented) { 325585535b8eSBarry Smith value = v + i*(stepval+bs)*bs + j*bs; 325685535b8eSBarry Smith } else { 325785535b8eSBarry Smith value = v + j*(stepval+bs)*bs + i*bs; 325885535b8eSBarry Smith } 325985535b8eSBarry Smith for (ii=0; ii<bs; ii++,value+=stepval) { 326085535b8eSBarry Smith for (jj=0; jj<bs; jj++) { 326185535b8eSBarry Smith *barray++ = *value++; 326285535b8eSBarry Smith } 326385535b8eSBarry Smith } 326485535b8eSBarry Smith barray -=bs2; 326585535b8eSBarry Smith } 326685535b8eSBarry Smith 326785535b8eSBarry Smith if (in[j] >= cstart && in[j] < cend){ 326885535b8eSBarry Smith col = in[j] - cstart; 326997e5c40aSBarry Smith ierr = MatSetValuesBlocked_SeqBAIJ(baij->A,1,&row,1,&col,barray,addv);CHKERRQ(ierr); 327085535b8eSBarry Smith } 327185535b8eSBarry Smith else if (in[j] < 0) continue; 327285535b8eSBarry Smith #if defined(PETSC_USE_DEBUG) 327385535b8eSBarry Smith else if (in[j] >= baij->Nbs) {SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large, col %D max %D",in[j],baij->Nbs-1);} 327485535b8eSBarry Smith #endif 327585535b8eSBarry Smith else { 327685535b8eSBarry Smith if (mat->was_assembled) { 327785535b8eSBarry Smith if (!baij->colmap) { 327885535b8eSBarry Smith ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 327985535b8eSBarry Smith } 328085535b8eSBarry Smith 328185535b8eSBarry Smith #if defined(PETSC_USE_DEBUG) 328285535b8eSBarry Smith #if defined (PETSC_USE_CTABLE) 328385535b8eSBarry Smith { PetscInt data; 328485535b8eSBarry Smith ierr = PetscTableFind(baij->colmap,in[j]+1,&data);CHKERRQ(ierr); 328585535b8eSBarry Smith if ((data - 1) % bs) SETERRQ(PETSC_ERR_PLIB,"Incorrect colmap"); 328685535b8eSBarry Smith } 328785535b8eSBarry Smith #else 328885535b8eSBarry Smith if ((baij->colmap[in[j]] - 1) % bs) SETERRQ(PETSC_ERR_PLIB,"Incorrect colmap"); 328985535b8eSBarry Smith #endif 329085535b8eSBarry Smith #endif 329185535b8eSBarry Smith #if defined (PETSC_USE_CTABLE) 329285535b8eSBarry Smith ierr = PetscTableFind(baij->colmap,in[j]+1,&col);CHKERRQ(ierr); 329385535b8eSBarry Smith col = (col - 1)/bs; 329485535b8eSBarry Smith #else 329585535b8eSBarry Smith col = (baij->colmap[in[j]] - 1)/bs; 329685535b8eSBarry Smith #endif 329785535b8eSBarry Smith if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) { 329885535b8eSBarry Smith ierr = DisAssemble_MPIBAIJ(mat);CHKERRQ(ierr); 329985535b8eSBarry Smith col = in[j]; 330085535b8eSBarry Smith } 330185535b8eSBarry Smith } 330285535b8eSBarry Smith else col = in[j]; 330397e5c40aSBarry Smith ierr = MatSetValuesBlocked_SeqBAIJ(baij->B,1,&row,1,&col,barray,addv);CHKERRQ(ierr); 330485535b8eSBarry Smith } 330585535b8eSBarry Smith } 330685535b8eSBarry Smith } else { 330785535b8eSBarry Smith if (!baij->donotstash) { 330885535b8eSBarry Smith if (roworiented) { 330985535b8eSBarry Smith ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 331085535b8eSBarry Smith } else { 331185535b8eSBarry Smith ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 331285535b8eSBarry Smith } 331385535b8eSBarry Smith } 331485535b8eSBarry Smith } 331585535b8eSBarry Smith } 331685535b8eSBarry Smith 331785535b8eSBarry Smith /* task normally handled by MatSetValuesBlocked() */ 331885535b8eSBarry Smith ierr = PetscLogEventEnd(MAT_SetValues,mat,0,0,0);CHKERRQ(ierr); 331985535b8eSBarry Smith PetscFunctionReturn(0); 332085535b8eSBarry Smith } 3321