179bdfe76SSatish Balay 2c6db04a5SJed Brown #include <../src/mat/impls/baij/mpi/mpibaij.h> /*I "petscmat.h" I*/ 3c5d9258eSSatish Balay 4c6db04a5SJed Brown #include <petscblaslapack.h> 565a92638SMatthew G. Knepley #include <petscsf.h> 679bdfe76SSatish Balay 74a2ae208SSatish Balay #undef __FUNCT__ 8985db425SBarry Smith #define __FUNCT__ "MatGetRowMaxAbs_MPIBAIJ" 9985db425SBarry Smith PetscErrorCode MatGetRowMaxAbs_MPIBAIJ(Mat A,Vec v,PetscInt idx[]) 107843d17aSBarry Smith { 117843d17aSBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 12dfbe8321SBarry Smith PetscErrorCode ierr; 13985db425SBarry Smith PetscInt i,*idxb = 0; 1487828ca2SBarry Smith PetscScalar *va,*vb; 157843d17aSBarry Smith Vec vtmp; 167843d17aSBarry Smith 177843d17aSBarry Smith PetscFunctionBegin; 18985db425SBarry Smith ierr = MatGetRowMaxAbs(a->A,v,idx);CHKERRQ(ierr); 191ebc52fbSHong Zhang ierr = VecGetArray(v,&va);CHKERRQ(ierr); 20985db425SBarry Smith if (idx) { 2126fbe8dcSKarl Rupp for (i=0; i<A->rmap->n; i++) { 2226fbe8dcSKarl Rupp if (PetscAbsScalar(va[i])) idx[i] += A->cmap->rstart; 2326fbe8dcSKarl Rupp } 24985db425SBarry Smith } 257843d17aSBarry Smith 26d0f46423SBarry Smith ierr = VecCreateSeq(PETSC_COMM_SELF,A->rmap->n,&vtmp);CHKERRQ(ierr); 27785e854fSJed Brown if (idx) {ierr = PetscMalloc1(A->rmap->n,&idxb);CHKERRQ(ierr);} 28985db425SBarry Smith ierr = MatGetRowMaxAbs(a->B,vtmp,idxb);CHKERRQ(ierr); 291ebc52fbSHong Zhang ierr = VecGetArray(vtmp,&vb);CHKERRQ(ierr); 307843d17aSBarry Smith 31d0f46423SBarry Smith for (i=0; i<A->rmap->n; i++) { 3226fbe8dcSKarl Rupp if (PetscAbsScalar(va[i]) < PetscAbsScalar(vb[i])) { 3326fbe8dcSKarl Rupp va[i] = vb[i]; 3426fbe8dcSKarl Rupp if (idx) idx[i] = A->cmap->bs*a->garray[idxb[i]/A->cmap->bs] + (idxb[i] % A->cmap->bs); 3526fbe8dcSKarl Rupp } 367843d17aSBarry Smith } 377843d17aSBarry Smith 381ebc52fbSHong Zhang ierr = VecRestoreArray(v,&va);CHKERRQ(ierr); 391ebc52fbSHong Zhang ierr = VecRestoreArray(vtmp,&vb);CHKERRQ(ierr); 40c31cb41cSBarry Smith ierr = PetscFree(idxb);CHKERRQ(ierr); 416bf464f9SBarry Smith ierr = VecDestroy(&vtmp);CHKERRQ(ierr); 427843d17aSBarry Smith PetscFunctionReturn(0); 437843d17aSBarry Smith } 447843d17aSBarry Smith 454a2ae208SSatish Balay #undef __FUNCT__ 464a2ae208SSatish Balay #define __FUNCT__ "MatStoreValues_MPIBAIJ" 477087cfbeSBarry Smith PetscErrorCode MatStoreValues_MPIBAIJ(Mat mat) 487fc3c18eSBarry Smith { 497fc3c18eSBarry Smith Mat_MPIBAIJ *aij = (Mat_MPIBAIJ*)mat->data; 50dfbe8321SBarry Smith PetscErrorCode ierr; 517fc3c18eSBarry Smith 527fc3c18eSBarry Smith PetscFunctionBegin; 537fc3c18eSBarry Smith ierr = MatStoreValues(aij->A);CHKERRQ(ierr); 547fc3c18eSBarry Smith ierr = MatStoreValues(aij->B);CHKERRQ(ierr); 557fc3c18eSBarry Smith PetscFunctionReturn(0); 567fc3c18eSBarry Smith } 577fc3c18eSBarry Smith 584a2ae208SSatish Balay #undef __FUNCT__ 594a2ae208SSatish Balay #define __FUNCT__ "MatRetrieveValues_MPIBAIJ" 607087cfbeSBarry Smith PetscErrorCode MatRetrieveValues_MPIBAIJ(Mat mat) 617fc3c18eSBarry Smith { 627fc3c18eSBarry Smith Mat_MPIBAIJ *aij = (Mat_MPIBAIJ*)mat->data; 63dfbe8321SBarry Smith PetscErrorCode ierr; 647fc3c18eSBarry Smith 657fc3c18eSBarry Smith PetscFunctionBegin; 667fc3c18eSBarry Smith ierr = MatRetrieveValues(aij->A);CHKERRQ(ierr); 677fc3c18eSBarry Smith ierr = MatRetrieveValues(aij->B);CHKERRQ(ierr); 687fc3c18eSBarry Smith PetscFunctionReturn(0); 697fc3c18eSBarry Smith } 707fc3c18eSBarry Smith 71537820f0SBarry Smith /* 72537820f0SBarry Smith Local utility routine that creates a mapping from the global column 7357b952d6SSatish Balay number to the local number in the off-diagonal part of the local 74e06f6af7SJed Brown storage of the matrix. This is done in a non scalable way since the 7557b952d6SSatish Balay length of colmap equals the global matrix length. 7657b952d6SSatish Balay */ 774a2ae208SSatish Balay #undef __FUNCT__ 78ab9863d7SBarry Smith #define __FUNCT__ "MatCreateColmap_MPIBAIJ_Private" 79ab9863d7SBarry Smith PetscErrorCode MatCreateColmap_MPIBAIJ_Private(Mat mat) 8057b952d6SSatish Balay { 8157b952d6SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 8257b952d6SSatish Balay Mat_SeqBAIJ *B = (Mat_SeqBAIJ*)baij->B->data; 836849ba73SBarry Smith PetscErrorCode ierr; 84d0f46423SBarry Smith PetscInt nbs = B->nbs,i,bs=mat->rmap->bs; 8557b952d6SSatish Balay 86d64ed03dSBarry Smith PetscFunctionBegin; 87aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 88e23dfa41SBarry Smith ierr = PetscTableCreate(baij->nbs,baij->Nbs+1,&baij->colmap);CHKERRQ(ierr); 8948e59246SSatish Balay for (i=0; i<nbs; i++) { 903861aac3SJed Brown ierr = PetscTableAdd(baij->colmap,baij->garray[i]+1,i*bs+1,INSERT_VALUES);CHKERRQ(ierr); 9148e59246SSatish Balay } 9248e59246SSatish Balay #else 93785e854fSJed Brown ierr = PetscMalloc1((baij->Nbs+1),&baij->colmap);CHKERRQ(ierr); 943bb1ff40SBarry Smith ierr = PetscLogObjectMemory((PetscObject)mat,baij->Nbs*sizeof(PetscInt));CHKERRQ(ierr); 95b24ad042SBarry Smith ierr = PetscMemzero(baij->colmap,baij->Nbs*sizeof(PetscInt));CHKERRQ(ierr); 96928fc39bSSatish Balay for (i=0; i<nbs; i++) baij->colmap[baij->garray[i]] = i*bs+1; 9748e59246SSatish Balay #endif 983a40ed3dSBarry Smith PetscFunctionReturn(0); 9957b952d6SSatish Balay } 10057b952d6SSatish Balay 101f5e9677aSSatish Balay #define MatSetValues_SeqBAIJ_A_Private(row,col,value,addv) \ 10280c1aa95SSatish Balay { \ 10380c1aa95SSatish Balay \ 10480c1aa95SSatish Balay brow = row/bs; \ 10580c1aa95SSatish Balay rp = aj + ai[brow]; ap = aa + bs2*ai[brow]; \ 106ac7a638eSSatish Balay rmax = aimax[brow]; nrow = ailen[brow]; \ 10780c1aa95SSatish Balay bcol = col/bs; \ 10880c1aa95SSatish Balay ridx = row % bs; cidx = col % bs; \ 109ab26458aSBarry Smith low = 0; high = nrow; \ 110ab26458aSBarry Smith while (high-low > 3) { \ 111ab26458aSBarry Smith t = (low+high)/2; \ 112ab26458aSBarry Smith if (rp[t] > bcol) high = t; \ 113ab26458aSBarry Smith else low = t; \ 114ab26458aSBarry Smith } \ 115ab26458aSBarry Smith for (_i=low; _i<high; _i++) { \ 11680c1aa95SSatish Balay if (rp[_i] > bcol) break; \ 11780c1aa95SSatish Balay if (rp[_i] == bcol) { \ 11880c1aa95SSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 119eada6651SSatish Balay if (addv == ADD_VALUES) *bap += value; \ 120eada6651SSatish Balay else *bap = value; \ 121ac7a638eSSatish Balay goto a_noinsert; \ 12280c1aa95SSatish Balay } \ 12380c1aa95SSatish Balay } \ 12489280ab3SLois Curfman McInnes if (a->nonew == 1) goto a_noinsert; \ 125e32f2f54SBarry Smith if (a->nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \ 126fef13f97SBarry Smith MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,brow,bcol,rmax,aa,ai,aj,rp,ap,aimax,a->nonew,MatScalar); \ 12780c1aa95SSatish Balay N = nrow++ - 1; \ 12880c1aa95SSatish Balay /* shift up all the later entries in this row */ \ 12980c1aa95SSatish Balay for (ii=N; ii>=_i; ii--) { \ 13080c1aa95SSatish Balay rp[ii+1] = rp[ii]; \ 1313eda8832SBarry Smith ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 13280c1aa95SSatish Balay } \ 1333eda8832SBarry Smith if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr); } \ 13480c1aa95SSatish Balay rp[_i] = bcol; \ 13580c1aa95SSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 136ac7a638eSSatish Balay a_noinsert:; \ 13780c1aa95SSatish Balay ailen[brow] = nrow; \ 13880c1aa95SSatish Balay } 13957b952d6SSatish Balay 140ac7a638eSSatish Balay #define MatSetValues_SeqBAIJ_B_Private(row,col,value,addv) \ 141ac7a638eSSatish Balay { \ 142ac7a638eSSatish Balay brow = row/bs; \ 143ac7a638eSSatish Balay rp = bj + bi[brow]; ap = ba + bs2*bi[brow]; \ 144ac7a638eSSatish Balay rmax = bimax[brow]; nrow = bilen[brow]; \ 145ac7a638eSSatish Balay bcol = col/bs; \ 146ac7a638eSSatish Balay ridx = row % bs; cidx = col % bs; \ 147ac7a638eSSatish Balay low = 0; high = nrow; \ 148ac7a638eSSatish Balay while (high-low > 3) { \ 149ac7a638eSSatish Balay t = (low+high)/2; \ 150ac7a638eSSatish Balay if (rp[t] > bcol) high = t; \ 151ac7a638eSSatish Balay else low = t; \ 152ac7a638eSSatish Balay } \ 153ac7a638eSSatish Balay for (_i=low; _i<high; _i++) { \ 154ac7a638eSSatish Balay if (rp[_i] > bcol) break; \ 155ac7a638eSSatish Balay if (rp[_i] == bcol) { \ 156ac7a638eSSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 157ac7a638eSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 158ac7a638eSSatish Balay else *bap = value; \ 159ac7a638eSSatish Balay goto b_noinsert; \ 160ac7a638eSSatish Balay } \ 161ac7a638eSSatish Balay } \ 16289280ab3SLois Curfman McInnes if (b->nonew == 1) goto b_noinsert; \ 163e32f2f54SBarry Smith if (b->nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \ 164fef13f97SBarry Smith MatSeqXAIJReallocateAIJ(B,b->mbs,bs2,nrow,brow,bcol,rmax,ba,bi,bj,rp,ap,bimax,b->nonew,MatScalar); \ 165ac7a638eSSatish Balay N = nrow++ - 1; \ 166ac7a638eSSatish Balay /* shift up all the later entries in this row */ \ 167ac7a638eSSatish Balay for (ii=N; ii>=_i; ii--) { \ 168ac7a638eSSatish Balay rp[ii+1] = rp[ii]; \ 1693eda8832SBarry Smith ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 170ac7a638eSSatish Balay } \ 1713eda8832SBarry Smith if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr);} \ 172ac7a638eSSatish Balay rp[_i] = bcol; \ 173ac7a638eSSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 174ac7a638eSSatish Balay b_noinsert:; \ 175ac7a638eSSatish Balay bilen[brow] = nrow; \ 176ac7a638eSSatish Balay } 177ac7a638eSSatish Balay 1784a2ae208SSatish Balay #undef __FUNCT__ 1794a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_MPIBAIJ" 180b24ad042SBarry Smith PetscErrorCode MatSetValues_MPIBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv) 18157b952d6SSatish Balay { 18257b952d6SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 18393fea6afSBarry Smith MatScalar value; 184ace3abfcSBarry Smith PetscBool roworiented = baij->roworiented; 185dfbe8321SBarry Smith PetscErrorCode ierr; 186b24ad042SBarry Smith PetscInt i,j,row,col; 187d0f46423SBarry Smith PetscInt rstart_orig=mat->rmap->rstart; 188d0f46423SBarry Smith PetscInt rend_orig =mat->rmap->rend,cstart_orig=mat->cmap->rstart; 189d0f46423SBarry Smith PetscInt cend_orig =mat->cmap->rend,bs=mat->rmap->bs; 19057b952d6SSatish Balay 191eada6651SSatish Balay /* Some Variables required in the macro */ 19280c1aa95SSatish Balay Mat A = baij->A; 19380c1aa95SSatish Balay Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)(A)->data; 194b24ad042SBarry Smith PetscInt *aimax=a->imax,*ai=a->i,*ailen=a->ilen,*aj=a->j; 1953eda8832SBarry Smith MatScalar *aa =a->a; 196ac7a638eSSatish Balay 197ac7a638eSSatish Balay Mat B = baij->B; 198ac7a638eSSatish Balay Mat_SeqBAIJ *b = (Mat_SeqBAIJ*)(B)->data; 199b24ad042SBarry Smith PetscInt *bimax=b->imax,*bi=b->i,*bilen=b->ilen,*bj=b->j; 2003eda8832SBarry Smith MatScalar *ba =b->a; 201ac7a638eSSatish Balay 202b24ad042SBarry Smith PetscInt *rp,ii,nrow,_i,rmax,N,brow,bcol; 203b24ad042SBarry Smith PetscInt low,high,t,ridx,cidx,bs2=a->bs2; 2043eda8832SBarry Smith MatScalar *ap,*bap; 20580c1aa95SSatish Balay 206d64ed03dSBarry Smith PetscFunctionBegin; 20757b952d6SSatish Balay for (i=0; i<m; i++) { 2085ef9f2a5SBarry Smith if (im[i] < 0) continue; 2092515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 210e32f2f54SBarry Smith if (im[i] >= mat->rmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],mat->rmap->N-1); 211639f9d9dSBarry Smith #endif 21257b952d6SSatish Balay if (im[i] >= rstart_orig && im[i] < rend_orig) { 21357b952d6SSatish Balay row = im[i] - rstart_orig; 21457b952d6SSatish Balay for (j=0; j<n; j++) { 21557b952d6SSatish Balay if (in[j] >= cstart_orig && in[j] < cend_orig) { 21657b952d6SSatish Balay col = in[j] - cstart_orig; 217db4deed7SKarl Rupp if (roworiented) value = v[i*n+j]; 218db4deed7SKarl Rupp else value = v[i+j*m]; 219f5e9677aSSatish Balay MatSetValues_SeqBAIJ_A_Private(row,col,value,addv); 22080c1aa95SSatish Balay /* ierr = MatSetValues_SeqBAIJ(baij->A,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 22173959e64SBarry Smith } else if (in[j] < 0) continue; 2222515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 223660746e0SBarry Smith else if (in[j] >= mat->cmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",in[j],mat->cmap->N-1); 224639f9d9dSBarry Smith #endif 22557b952d6SSatish Balay else { 22657b952d6SSatish Balay if (mat->was_assembled) { 227905e6a2fSBarry Smith if (!baij->colmap) { 228ab9863d7SBarry Smith ierr = MatCreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 229905e6a2fSBarry Smith } 230aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 2310f5bd95cSBarry Smith ierr = PetscTableFind(baij->colmap,in[j]/bs + 1,&col);CHKERRQ(ierr); 232bba1ac68SSatish Balay col = col - 1; 23348e59246SSatish Balay #else 234bba1ac68SSatish Balay col = baij->colmap[in[j]/bs] - 1; 23548e59246SSatish Balay #endif 236c9ef50b2SBarry Smith if (col < 0 && !((Mat_SeqBAIJ*)(baij->B->data))->nonew) { 237ab9863d7SBarry Smith ierr = MatDisAssemble_MPIBAIJ(mat);CHKERRQ(ierr); 2388295de27SSatish Balay col = in[j]; 2399bf004c3SSatish Balay /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */ 2409bf004c3SSatish Balay B = baij->B; 2419bf004c3SSatish Balay b = (Mat_SeqBAIJ*)(B)->data; 2429bf004c3SSatish Balay bimax=b->imax;bi=b->i;bilen=b->ilen;bj=b->j; 2439bf004c3SSatish Balay ba =b->a; 244c9ef50b2SBarry Smith } else if (col < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", im[i], in[j]); 245c9ef50b2SBarry Smith else col += in[j]%bs; 2468295de27SSatish Balay } else col = in[j]; 247db4deed7SKarl Rupp if (roworiented) value = v[i*n+j]; 248db4deed7SKarl Rupp else value = v[i+j*m]; 24990da58bdSSatish Balay MatSetValues_SeqBAIJ_B_Private(row,col,value,addv); 25090da58bdSSatish Balay /* ierr = MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 25157b952d6SSatish Balay } 25257b952d6SSatish Balay } 253d64ed03dSBarry Smith } else { 2544cb17eb5SBarry Smith if (mat->nooffprocentries) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Setting off process row %D even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set",im[i]); 25590f02eecSBarry Smith if (!baij->donotstash) { 2565080c13bSMatthew G Knepley mat->assembled = PETSC_FALSE; 257ff2fd236SBarry Smith if (roworiented) { 258b400d20cSBarry Smith ierr = MatStashValuesRow_Private(&mat->stash,im[i],n,in,v+i*n,PETSC_FALSE);CHKERRQ(ierr); 259ff2fd236SBarry Smith } else { 260b400d20cSBarry Smith ierr = MatStashValuesCol_Private(&mat->stash,im[i],n,in,v+i,m,PETSC_FALSE);CHKERRQ(ierr); 26157b952d6SSatish Balay } 26257b952d6SSatish Balay } 26357b952d6SSatish Balay } 26490f02eecSBarry Smith } 2653a40ed3dSBarry Smith PetscFunctionReturn(0); 26657b952d6SSatish Balay } 26757b952d6SSatish Balay 2684a2ae208SSatish Balay #undef __FUNCT__ 26997e5c40aSBarry Smith #define __FUNCT__ "MatSetValuesBlocked_MPIBAIJ" 27097e5c40aSBarry Smith PetscErrorCode MatSetValuesBlocked_MPIBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv) 271ab26458aSBarry Smith { 272ab26458aSBarry Smith Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 273dd6ea824SBarry Smith const PetscScalar *value; 274f15d580aSBarry Smith MatScalar *barray = baij->barray; 275ace3abfcSBarry Smith PetscBool roworiented = baij->roworiented; 276dfbe8321SBarry Smith PetscErrorCode ierr; 277899cda47SBarry Smith PetscInt i,j,ii,jj,row,col,rstart=baij->rstartbs; 278899cda47SBarry Smith PetscInt rend=baij->rendbs,cstart=baij->cstartbs,stepval; 279d0f46423SBarry Smith PetscInt cend=baij->cendbs,bs=mat->rmap->bs,bs2=baij->bs2; 280ab26458aSBarry Smith 281b16ae2b1SBarry Smith PetscFunctionBegin; 28230793edcSSatish Balay if (!barray) { 283785e854fSJed Brown ierr = PetscMalloc1(bs2,&barray);CHKERRQ(ierr); 28482502324SSatish Balay baij->barray = barray; 28530793edcSSatish Balay } 28630793edcSSatish Balay 28726fbe8dcSKarl Rupp if (roworiented) stepval = (n-1)*bs; 28826fbe8dcSKarl Rupp else stepval = (m-1)*bs; 28926fbe8dcSKarl Rupp 290ab26458aSBarry Smith for (i=0; i<m; i++) { 2915ef9f2a5SBarry Smith if (im[i] < 0) continue; 2922515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 293e32f2f54SBarry Smith if (im[i] >= baij->Mbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large, row %D max %D",im[i],baij->Mbs-1); 294ab26458aSBarry Smith #endif 295ab26458aSBarry Smith if (im[i] >= rstart && im[i] < rend) { 296ab26458aSBarry Smith row = im[i] - rstart; 297ab26458aSBarry Smith for (j=0; j<n; j++) { 29815b57d14SSatish Balay /* If NumCol = 1 then a copy is not required */ 29915b57d14SSatish Balay if ((roworiented) && (n == 1)) { 300f15d580aSBarry Smith barray = (MatScalar*)v + i*bs2; 30115b57d14SSatish Balay } else if ((!roworiented) && (m == 1)) { 302f15d580aSBarry Smith barray = (MatScalar*)v + j*bs2; 30315b57d14SSatish Balay } else { /* Here a copy is required */ 304ab26458aSBarry Smith if (roworiented) { 30553ef36baSBarry Smith value = v + (i*(stepval+bs) + j)*bs; 306ab26458aSBarry Smith } else { 30753ef36baSBarry Smith value = v + (j*(stepval+bs) + i)*bs; 308abef11f7SSatish Balay } 30953ef36baSBarry Smith for (ii=0; ii<bs; ii++,value+=bs+stepval) { 31026fbe8dcSKarl Rupp for (jj=0; jj<bs; jj++) barray[jj] = value[jj]; 31153ef36baSBarry Smith barray += bs; 31247513183SBarry Smith } 31330793edcSSatish Balay barray -= bs2; 31415b57d14SSatish Balay } 315abef11f7SSatish Balay 316abef11f7SSatish Balay if (in[j] >= cstart && in[j] < cend) { 317abef11f7SSatish Balay col = in[j] - cstart; 31897e5c40aSBarry Smith ierr = MatSetValuesBlocked_SeqBAIJ(baij->A,1,&row,1,&col,barray,addv);CHKERRQ(ierr); 31926fbe8dcSKarl Rupp } else if (in[j] < 0) continue; 3202515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 321cb9801acSJed Brown else if (in[j] >= baij->Nbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large, col %D max %D",in[j],baij->Nbs-1); 322ab26458aSBarry Smith #endif 323ab26458aSBarry Smith else { 324ab26458aSBarry Smith if (mat->was_assembled) { 325ab26458aSBarry Smith if (!baij->colmap) { 326ab9863d7SBarry Smith ierr = MatCreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 327ab26458aSBarry Smith } 328a5eb4965SSatish Balay 3292515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 330aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 331b24ad042SBarry Smith { PetscInt data; 3320f5bd95cSBarry Smith ierr = PetscTableFind(baij->colmap,in[j]+1,&data);CHKERRQ(ierr); 333e32f2f54SBarry Smith if ((data - 1) % bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap"); 334fa46199cSSatish Balay } 33548e59246SSatish Balay #else 336e32f2f54SBarry Smith if ((baij->colmap[in[j]] - 1) % bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap"); 337a5eb4965SSatish Balay #endif 33848e59246SSatish Balay #endif 339aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 3400f5bd95cSBarry Smith ierr = PetscTableFind(baij->colmap,in[j]+1,&col);CHKERRQ(ierr); 341fa46199cSSatish Balay col = (col - 1)/bs; 34248e59246SSatish Balay #else 343a5eb4965SSatish Balay col = (baij->colmap[in[j]] - 1)/bs; 34448e59246SSatish Balay #endif 3450e9bae81SBarry Smith if (col < 0 && !((Mat_SeqBAIJ*)(baij->B->data))->nonew) { 346ab9863d7SBarry Smith ierr = MatDisAssemble_MPIBAIJ(mat);CHKERRQ(ierr); 347ab26458aSBarry Smith col = in[j]; 3480e9bae81SBarry Smith } else if (col < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", bs*im[i], bs*in[j]); 349db4deed7SKarl Rupp } else col = in[j]; 35097e5c40aSBarry Smith ierr = MatSetValuesBlocked_SeqBAIJ(baij->B,1,&row,1,&col,barray,addv);CHKERRQ(ierr); 351ab26458aSBarry Smith } 352ab26458aSBarry Smith } 353d64ed03dSBarry Smith } else { 3544cb17eb5SBarry Smith if (mat->nooffprocentries) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Setting off process row %D even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set",im[i]); 355ab26458aSBarry Smith if (!baij->donotstash) { 356ff2fd236SBarry Smith if (roworiented) { 3576fa18ffdSBarry Smith ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 358ff2fd236SBarry Smith } else { 3596fa18ffdSBarry Smith ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 360ff2fd236SBarry Smith } 361abef11f7SSatish Balay } 362ab26458aSBarry Smith } 363ab26458aSBarry Smith } 3643a40ed3dSBarry Smith PetscFunctionReturn(0); 365ab26458aSBarry Smith } 3666fa18ffdSBarry Smith 3670bdbc534SSatish Balay #define HASH_KEY 0.6180339887 368b24ad042SBarry Smith #define HASH(size,key,tmp) (tmp = (key)*HASH_KEY,(PetscInt)((size)*(tmp-(PetscInt)tmp))) 369b24ad042SBarry Smith /* #define HASH(size,key) ((PetscInt)((size)*fmod(((key)*HASH_KEY),1))) */ 370b24ad042SBarry Smith /* #define HASH(size,key,tmp) ((PetscInt)((size)*fmod(((key)*HASH_KEY),1))) */ 3714a2ae208SSatish Balay #undef __FUNCT__ 37297e5c40aSBarry Smith #define __FUNCT__ "MatSetValues_MPIBAIJ_HT" 37397e5c40aSBarry Smith PetscErrorCode MatSetValues_MPIBAIJ_HT(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv) 3740bdbc534SSatish Balay { 3750bdbc534SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 376ace3abfcSBarry Smith PetscBool roworiented = baij->roworiented; 377dfbe8321SBarry Smith PetscErrorCode ierr; 378b24ad042SBarry Smith PetscInt i,j,row,col; 379d0f46423SBarry Smith PetscInt rstart_orig=mat->rmap->rstart; 380d0f46423SBarry Smith PetscInt rend_orig =mat->rmap->rend,Nbs=baij->Nbs; 381d0f46423SBarry Smith PetscInt h1,key,size=baij->ht_size,bs=mat->rmap->bs,*HT=baij->ht,idx; 382329f5518SBarry Smith PetscReal tmp; 3833eda8832SBarry Smith MatScalar **HD = baij->hd,value; 3842515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 385b24ad042SBarry Smith PetscInt total_ct=baij->ht_total_ct,insert_ct=baij->ht_insert_ct; 3864a15367fSSatish Balay #endif 3870bdbc534SSatish Balay 3880bdbc534SSatish Balay PetscFunctionBegin; 3890bdbc534SSatish Balay for (i=0; i<m; i++) { 3902515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 391e32f2f54SBarry Smith if (im[i] < 0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative row"); 392e32f2f54SBarry Smith if (im[i] >= mat->rmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],mat->rmap->N-1); 3930bdbc534SSatish Balay #endif 3940bdbc534SSatish Balay row = im[i]; 395c2760754SSatish Balay if (row >= rstart_orig && row < rend_orig) { 3960bdbc534SSatish Balay for (j=0; j<n; j++) { 3970bdbc534SSatish Balay col = in[j]; 398db4deed7SKarl Rupp if (roworiented) value = v[i*n+j]; 399db4deed7SKarl Rupp else value = v[i+j*m]; 400b24ad042SBarry Smith /* Look up PetscInto the Hash Table */ 401c2760754SSatish Balay key = (row/bs)*Nbs+(col/bs)+1; 402c2760754SSatish Balay h1 = HASH(size,key,tmp); 4030bdbc534SSatish Balay 404c2760754SSatish Balay 405c2760754SSatish Balay idx = h1; 4062515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 407187ce0cbSSatish Balay insert_ct++; 408187ce0cbSSatish Balay total_ct++; 409187ce0cbSSatish Balay if (HT[idx] != key) { 410187ce0cbSSatish Balay for (idx=h1; (idx<size) && (HT[idx]!=key); idx++,total_ct++) ; 411187ce0cbSSatish Balay if (idx == size) { 412187ce0cbSSatish Balay for (idx=0; (idx<h1) && (HT[idx]!=key); idx++,total_ct++) ; 413f23aa3ddSBarry Smith if (idx == h1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"(%D,%D) has no entry in the hash table", row, col); 414187ce0cbSSatish Balay } 415187ce0cbSSatish Balay } 416187ce0cbSSatish Balay #else 417c2760754SSatish Balay if (HT[idx] != key) { 418c2760754SSatish Balay for (idx=h1; (idx<size) && (HT[idx]!=key); idx++) ; 419c2760754SSatish Balay if (idx == size) { 420c2760754SSatish Balay for (idx=0; (idx<h1) && (HT[idx]!=key); idx++) ; 421f23aa3ddSBarry Smith if (idx == h1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"(%D,%D) has no entry in the hash table", row, col); 422c2760754SSatish Balay } 423c2760754SSatish Balay } 424187ce0cbSSatish Balay #endif 425c2760754SSatish Balay /* A HASH table entry is found, so insert the values at the correct address */ 426c2760754SSatish Balay if (addv == ADD_VALUES) *(HD[idx]+ (col % bs)*bs + (row % bs)) += value; 427c2760754SSatish Balay else *(HD[idx]+ (col % bs)*bs + (row % bs)) = value; 4280bdbc534SSatish Balay } 42926fbe8dcSKarl Rupp } else if (!baij->donotstash) { 430ff2fd236SBarry Smith if (roworiented) { 431b400d20cSBarry Smith ierr = MatStashValuesRow_Private(&mat->stash,im[i],n,in,v+i*n,PETSC_FALSE);CHKERRQ(ierr); 432ff2fd236SBarry Smith } else { 433b400d20cSBarry Smith ierr = MatStashValuesCol_Private(&mat->stash,im[i],n,in,v+i,m,PETSC_FALSE);CHKERRQ(ierr); 4340bdbc534SSatish Balay } 4350bdbc534SSatish Balay } 4360bdbc534SSatish Balay } 4372515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 438187ce0cbSSatish Balay baij->ht_total_ct = total_ct; 439187ce0cbSSatish Balay baij->ht_insert_ct = insert_ct; 440187ce0cbSSatish Balay #endif 4410bdbc534SSatish Balay PetscFunctionReturn(0); 4420bdbc534SSatish Balay } 4430bdbc534SSatish Balay 4444a2ae208SSatish Balay #undef __FUNCT__ 44597e5c40aSBarry Smith #define __FUNCT__ "MatSetValuesBlocked_MPIBAIJ_HT" 44697e5c40aSBarry Smith PetscErrorCode MatSetValuesBlocked_MPIBAIJ_HT(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv) 4470bdbc534SSatish Balay { 4480bdbc534SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 449ace3abfcSBarry Smith PetscBool roworiented = baij->roworiented; 450dfbe8321SBarry Smith PetscErrorCode ierr; 451b24ad042SBarry Smith PetscInt i,j,ii,jj,row,col; 452899cda47SBarry Smith PetscInt rstart=baij->rstartbs; 453d0f46423SBarry Smith PetscInt rend =mat->rmap->rend,stepval,bs=mat->rmap->bs,bs2=baij->bs2,nbs2=n*bs2; 454b24ad042SBarry Smith PetscInt h1,key,size=baij->ht_size,idx,*HT=baij->ht,Nbs=baij->Nbs; 455329f5518SBarry Smith PetscReal tmp; 4563eda8832SBarry Smith MatScalar **HD = baij->hd,*baij_a; 457dd6ea824SBarry Smith const PetscScalar *v_t,*value; 4582515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 459b24ad042SBarry Smith PetscInt total_ct=baij->ht_total_ct,insert_ct=baij->ht_insert_ct; 4604a15367fSSatish Balay #endif 4610bdbc534SSatish Balay 462d0a41580SSatish Balay PetscFunctionBegin; 46326fbe8dcSKarl Rupp if (roworiented) stepval = (n-1)*bs; 46426fbe8dcSKarl Rupp else stepval = (m-1)*bs; 46526fbe8dcSKarl Rupp 4660bdbc534SSatish Balay for (i=0; i<m; i++) { 4672515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 468e32f2f54SBarry Smith if (im[i] < 0) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %D",im[i]); 469e32f2f54SBarry Smith if (im[i] >= baij->Mbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],baij->Mbs-1); 4700bdbc534SSatish Balay #endif 4710bdbc534SSatish Balay row = im[i]; 472ab715e2cSSatish Balay v_t = v + i*nbs2; 473c2760754SSatish Balay if (row >= rstart && row < rend) { 4740bdbc534SSatish Balay for (j=0; j<n; j++) { 4750bdbc534SSatish Balay col = in[j]; 4760bdbc534SSatish Balay 4770bdbc534SSatish Balay /* Look up into the Hash Table */ 478c2760754SSatish Balay key = row*Nbs+col+1; 479c2760754SSatish Balay h1 = HASH(size,key,tmp); 4800bdbc534SSatish Balay 481c2760754SSatish Balay idx = h1; 4822515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 483187ce0cbSSatish Balay total_ct++; 484187ce0cbSSatish Balay insert_ct++; 485187ce0cbSSatish Balay if (HT[idx] != key) { 486187ce0cbSSatish Balay for (idx=h1; (idx<size) && (HT[idx]!=key); idx++,total_ct++) ; 487187ce0cbSSatish Balay if (idx == size) { 488187ce0cbSSatish Balay for (idx=0; (idx<h1) && (HT[idx]!=key); idx++,total_ct++) ; 489f23aa3ddSBarry Smith if (idx == h1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"(%D,%D) has no entry in the hash table", row, col); 490187ce0cbSSatish Balay } 491187ce0cbSSatish Balay } 492187ce0cbSSatish Balay #else 493c2760754SSatish Balay if (HT[idx] != key) { 494c2760754SSatish Balay for (idx=h1; (idx<size) && (HT[idx]!=key); idx++) ; 495c2760754SSatish Balay if (idx == size) { 496c2760754SSatish Balay for (idx=0; (idx<h1) && (HT[idx]!=key); idx++) ; 497f23aa3ddSBarry Smith if (idx == h1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"(%D,%D) has no entry in the hash table", row, col); 498c2760754SSatish Balay } 499c2760754SSatish Balay } 500187ce0cbSSatish Balay #endif 501c2760754SSatish Balay baij_a = HD[idx]; 5020bdbc534SSatish Balay if (roworiented) { 503c2760754SSatish Balay /*value = v + i*(stepval+bs)*bs + j*bs;*/ 504187ce0cbSSatish Balay /* value = v + (i*(stepval+bs)+j)*bs; */ 505187ce0cbSSatish Balay value = v_t; 506187ce0cbSSatish Balay v_t += bs; 507fef45726SSatish Balay if (addv == ADD_VALUES) { 508c2760754SSatish Balay for (ii=0; ii<bs; ii++,value+=stepval) { 509c2760754SSatish Balay for (jj=ii; jj<bs2; jj+=bs) { 510fef45726SSatish Balay baij_a[jj] += *value++; 511b4cc0f5aSSatish Balay } 512b4cc0f5aSSatish Balay } 513fef45726SSatish Balay } else { 514c2760754SSatish Balay for (ii=0; ii<bs; ii++,value+=stepval) { 515c2760754SSatish Balay for (jj=ii; jj<bs2; jj+=bs) { 516fef45726SSatish Balay baij_a[jj] = *value++; 517fef45726SSatish Balay } 518fef45726SSatish Balay } 519fef45726SSatish Balay } 5200bdbc534SSatish Balay } else { 5210bdbc534SSatish Balay value = v + j*(stepval+bs)*bs + i*bs; 522fef45726SSatish Balay if (addv == ADD_VALUES) { 523b4cc0f5aSSatish Balay for (ii=0; ii<bs; ii++,value+=stepval,baij_a+=bs) { 5240bdbc534SSatish Balay for (jj=0; jj<bs; jj++) { 525fef45726SSatish Balay baij_a[jj] += *value++; 526fef45726SSatish Balay } 527fef45726SSatish Balay } 528fef45726SSatish Balay } else { 529fef45726SSatish Balay for (ii=0; ii<bs; ii++,value+=stepval,baij_a+=bs) { 530fef45726SSatish Balay for (jj=0; jj<bs; jj++) { 531fef45726SSatish Balay baij_a[jj] = *value++; 532fef45726SSatish Balay } 533b4cc0f5aSSatish Balay } 5340bdbc534SSatish Balay } 5350bdbc534SSatish Balay } 5360bdbc534SSatish Balay } 5370bdbc534SSatish Balay } else { 5380bdbc534SSatish Balay if (!baij->donotstash) { 5390bdbc534SSatish Balay if (roworiented) { 5408798bf22SSatish Balay ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 5410bdbc534SSatish Balay } else { 5428798bf22SSatish Balay ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 5430bdbc534SSatish Balay } 5440bdbc534SSatish Balay } 5450bdbc534SSatish Balay } 5460bdbc534SSatish Balay } 5472515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 548187ce0cbSSatish Balay baij->ht_total_ct = total_ct; 549187ce0cbSSatish Balay baij->ht_insert_ct = insert_ct; 550187ce0cbSSatish Balay #endif 5510bdbc534SSatish Balay PetscFunctionReturn(0); 5520bdbc534SSatish Balay } 553133cdb44SSatish Balay 5544a2ae208SSatish Balay #undef __FUNCT__ 5554a2ae208SSatish Balay #define __FUNCT__ "MatGetValues_MPIBAIJ" 556b24ad042SBarry Smith PetscErrorCode MatGetValues_MPIBAIJ(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[]) 557d6de1c52SSatish Balay { 558d6de1c52SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 5596849ba73SBarry Smith PetscErrorCode ierr; 560d0f46423SBarry Smith PetscInt bs = mat->rmap->bs,i,j,bsrstart = mat->rmap->rstart,bsrend = mat->rmap->rend; 561d0f46423SBarry Smith PetscInt bscstart = mat->cmap->rstart,bscend = mat->cmap->rend,row,col,data; 562d6de1c52SSatish Balay 563133cdb44SSatish Balay PetscFunctionBegin; 564d6de1c52SSatish Balay for (i=0; i<m; i++) { 565e32f2f54SBarry Smith if (idxm[i] < 0) continue; /* SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %D",idxm[i]);*/ 566e32f2f54SBarry Smith if (idxm[i] >= mat->rmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",idxm[i],mat->rmap->N-1); 567d6de1c52SSatish Balay if (idxm[i] >= bsrstart && idxm[i] < bsrend) { 568d6de1c52SSatish Balay row = idxm[i] - bsrstart; 569d6de1c52SSatish Balay for (j=0; j<n; j++) { 570e32f2f54SBarry Smith if (idxn[j] < 0) continue; /* SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative column: %D",idxn[j]); */ 571e32f2f54SBarry Smith if (idxn[j] >= mat->cmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",idxn[j],mat->cmap->N-1); 572d6de1c52SSatish Balay if (idxn[j] >= bscstart && idxn[j] < bscend) { 573d6de1c52SSatish Balay col = idxn[j] - bscstart; 57498dd23e9SBarry Smith ierr = MatGetValues_SeqBAIJ(baij->A,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr); 575d64ed03dSBarry Smith } else { 576905e6a2fSBarry Smith if (!baij->colmap) { 577ab9863d7SBarry Smith ierr = MatCreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 578905e6a2fSBarry Smith } 579aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 5800f5bd95cSBarry Smith ierr = PetscTableFind(baij->colmap,idxn[j]/bs+1,&data);CHKERRQ(ierr); 581fa46199cSSatish Balay data--; 58248e59246SSatish Balay #else 58348e59246SSatish Balay data = baij->colmap[idxn[j]/bs]-1; 58448e59246SSatish Balay #endif 58548e59246SSatish Balay if ((data < 0) || (baij->garray[data/bs] != idxn[j]/bs)) *(v+i*n+j) = 0.0; 586d9d09a02SSatish Balay else { 58748e59246SSatish Balay col = data + idxn[j]%bs; 58898dd23e9SBarry Smith ierr = MatGetValues_SeqBAIJ(baij->B,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr); 589d6de1c52SSatish Balay } 590d6de1c52SSatish Balay } 591d6de1c52SSatish Balay } 592f23aa3ddSBarry Smith } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local values currently supported"); 593d6de1c52SSatish Balay } 5943a40ed3dSBarry Smith PetscFunctionReturn(0); 595d6de1c52SSatish Balay } 596d6de1c52SSatish Balay 5974a2ae208SSatish Balay #undef __FUNCT__ 5984a2ae208SSatish Balay #define __FUNCT__ "MatNorm_MPIBAIJ" 599dfbe8321SBarry Smith PetscErrorCode MatNorm_MPIBAIJ(Mat mat,NormType type,PetscReal *nrm) 600d6de1c52SSatish Balay { 601d6de1c52SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 602d6de1c52SSatish Balay Mat_SeqBAIJ *amat = (Mat_SeqBAIJ*)baij->A->data,*bmat = (Mat_SeqBAIJ*)baij->B->data; 603dfbe8321SBarry Smith PetscErrorCode ierr; 604d0f46423SBarry Smith PetscInt i,j,bs2=baij->bs2,bs=baij->A->rmap->bs,nz,row,col; 605329f5518SBarry Smith PetscReal sum = 0.0; 6063eda8832SBarry Smith MatScalar *v; 607d6de1c52SSatish Balay 608d64ed03dSBarry Smith PetscFunctionBegin; 609d6de1c52SSatish Balay if (baij->size == 1) { 610064f8208SBarry Smith ierr = MatNorm(baij->A,type,nrm);CHKERRQ(ierr); 611d6de1c52SSatish Balay } else { 612d6de1c52SSatish Balay if (type == NORM_FROBENIUS) { 613d6de1c52SSatish Balay v = amat->a; 6148a62d963SHong Zhang nz = amat->nz*bs2; 6158a62d963SHong Zhang for (i=0; i<nz; i++) { 616329f5518SBarry Smith sum += PetscRealPart(PetscConj(*v)*(*v)); v++; 617d6de1c52SSatish Balay } 618d6de1c52SSatish Balay v = bmat->a; 6198a62d963SHong Zhang nz = bmat->nz*bs2; 6208a62d963SHong Zhang for (i=0; i<nz; i++) { 621329f5518SBarry Smith sum += PetscRealPart(PetscConj(*v)*(*v)); v++; 622d6de1c52SSatish Balay } 623ce94432eSBarry Smith ierr = MPI_Allreduce(&sum,nrm,1,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 6248f1a2a5eSBarry Smith *nrm = PetscSqrtReal(*nrm); 6258a62d963SHong Zhang } else if (type == NORM_1) { /* max column sum */ 6268a62d963SHong Zhang PetscReal *tmp,*tmp2; 627899cda47SBarry Smith PetscInt *jj,*garray=baij->garray,cstart=baij->rstartbs; 628dcca6d9dSJed Brown ierr = PetscMalloc2(mat->cmap->N,&tmp,mat->cmap->N,&tmp2);CHKERRQ(ierr); 629d0f46423SBarry Smith ierr = PetscMemzero(tmp,mat->cmap->N*sizeof(PetscReal));CHKERRQ(ierr); 6308a62d963SHong Zhang v = amat->a; jj = amat->j; 6318a62d963SHong Zhang for (i=0; i<amat->nz; i++) { 6328a62d963SHong Zhang for (j=0; j<bs; j++) { 6338a62d963SHong Zhang col = bs*(cstart + *jj) + j; /* column index */ 6348a62d963SHong Zhang for (row=0; row<bs; row++) { 6358a62d963SHong Zhang tmp[col] += PetscAbsScalar(*v); v++; 6368a62d963SHong Zhang } 6378a62d963SHong Zhang } 6388a62d963SHong Zhang jj++; 6398a62d963SHong Zhang } 6408a62d963SHong Zhang v = bmat->a; jj = bmat->j; 6418a62d963SHong Zhang for (i=0; i<bmat->nz; i++) { 6428a62d963SHong Zhang for (j=0; j<bs; j++) { 6438a62d963SHong Zhang col = bs*garray[*jj] + j; 6448a62d963SHong Zhang for (row=0; row<bs; row++) { 6458a62d963SHong Zhang tmp[col] += PetscAbsScalar(*v); v++; 6468a62d963SHong Zhang } 6478a62d963SHong Zhang } 6488a62d963SHong Zhang jj++; 6498a62d963SHong Zhang } 650ce94432eSBarry Smith ierr = MPI_Allreduce(tmp,tmp2,mat->cmap->N,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 6518a62d963SHong Zhang *nrm = 0.0; 652d0f46423SBarry Smith for (j=0; j<mat->cmap->N; j++) { 6538a62d963SHong Zhang if (tmp2[j] > *nrm) *nrm = tmp2[j]; 6548a62d963SHong Zhang } 655fca92195SBarry Smith ierr = PetscFree2(tmp,tmp2);CHKERRQ(ierr); 6568a62d963SHong Zhang } else if (type == NORM_INFINITY) { /* max row sum */ 657577dd1f9SKris Buschelman PetscReal *sums; 658785e854fSJed Brown ierr = PetscMalloc1(bs,&sums);CHKERRQ(ierr); 6598a62d963SHong Zhang sum = 0.0; 6608a62d963SHong Zhang for (j=0; j<amat->mbs; j++) { 6618a62d963SHong Zhang for (row=0; row<bs; row++) sums[row] = 0.0; 6628a62d963SHong Zhang v = amat->a + bs2*amat->i[j]; 6638a62d963SHong Zhang nz = amat->i[j+1]-amat->i[j]; 6648a62d963SHong Zhang for (i=0; i<nz; i++) { 6658a62d963SHong Zhang for (col=0; col<bs; col++) { 6668a62d963SHong Zhang for (row=0; row<bs; row++) { 6678a62d963SHong Zhang sums[row] += PetscAbsScalar(*v); v++; 6688a62d963SHong Zhang } 6698a62d963SHong Zhang } 6708a62d963SHong Zhang } 6718a62d963SHong Zhang v = bmat->a + bs2*bmat->i[j]; 6728a62d963SHong Zhang nz = bmat->i[j+1]-bmat->i[j]; 6738a62d963SHong Zhang for (i=0; i<nz; i++) { 6748a62d963SHong Zhang for (col=0; col<bs; col++) { 6758a62d963SHong Zhang for (row=0; row<bs; row++) { 6768a62d963SHong Zhang sums[row] += PetscAbsScalar(*v); v++; 6778a62d963SHong Zhang } 6788a62d963SHong Zhang } 6798a62d963SHong Zhang } 6808a62d963SHong Zhang for (row=0; row<bs; row++) { 6818a62d963SHong Zhang if (sums[row] > sum) sum = sums[row]; 6828a62d963SHong Zhang } 6838a62d963SHong Zhang } 684ce94432eSBarry Smith ierr = MPI_Allreduce(&sum,nrm,1,MPIU_REAL,MPIU_MAX,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 685577dd1f9SKris Buschelman ierr = PetscFree(sums);CHKERRQ(ierr); 686ce94432eSBarry Smith } else SETERRQ(PetscObjectComm((PetscObject)mat),PETSC_ERR_SUP,"No support for this norm yet"); 687d64ed03dSBarry Smith } 6883a40ed3dSBarry Smith PetscFunctionReturn(0); 689d6de1c52SSatish Balay } 69057b952d6SSatish Balay 691fef45726SSatish Balay /* 692fef45726SSatish Balay Creates the hash table, and sets the table 693fef45726SSatish Balay This table is created only once. 694fef45726SSatish Balay If new entried need to be added to the matrix 695fef45726SSatish Balay then the hash table has to be destroyed and 696fef45726SSatish Balay recreated. 697fef45726SSatish Balay */ 6984a2ae208SSatish Balay #undef __FUNCT__ 6994a2ae208SSatish Balay #define __FUNCT__ "MatCreateHashTable_MPIBAIJ_Private" 700dfbe8321SBarry Smith PetscErrorCode MatCreateHashTable_MPIBAIJ_Private(Mat mat,PetscReal factor) 701596b8d2eSBarry Smith { 702596b8d2eSBarry Smith Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 703596b8d2eSBarry Smith Mat A = baij->A,B=baij->B; 704596b8d2eSBarry Smith Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data,*b=(Mat_SeqBAIJ*)B->data; 705b24ad042SBarry Smith PetscInt i,j,k,nz=a->nz+b->nz,h1,*ai=a->i,*aj=a->j,*bi=b->i,*bj=b->j; 7066849ba73SBarry Smith PetscErrorCode ierr; 707fca92195SBarry Smith PetscInt ht_size,bs2=baij->bs2,rstart=baij->rstartbs; 708899cda47SBarry Smith PetscInt cstart=baij->cstartbs,*garray=baij->garray,row,col,Nbs=baij->Nbs; 709b24ad042SBarry Smith PetscInt *HT,key; 7103eda8832SBarry Smith MatScalar **HD; 711329f5518SBarry Smith PetscReal tmp; 7126cf91177SBarry Smith #if defined(PETSC_USE_INFO) 713b24ad042SBarry Smith PetscInt ct=0,max=0; 7144a15367fSSatish Balay #endif 715fef45726SSatish Balay 716d64ed03dSBarry Smith PetscFunctionBegin; 717fca92195SBarry Smith if (baij->ht) PetscFunctionReturn(0); 718fef45726SSatish Balay 719fca92195SBarry Smith baij->ht_size = (PetscInt)(factor*nz); 720fca92195SBarry Smith ht_size = baij->ht_size; 7210bdbc534SSatish Balay 722fef45726SSatish Balay /* Allocate Memory for Hash Table */ 7231795a4d1SJed Brown ierr = PetscCalloc2(ht_size,&baij->hd,ht_size,&baij->ht);CHKERRQ(ierr); 724b9e4cc15SSatish Balay HD = baij->hd; 725a07cd24cSSatish Balay HT = baij->ht; 726b9e4cc15SSatish Balay 727596b8d2eSBarry Smith /* Loop Over A */ 7280bdbc534SSatish Balay for (i=0; i<a->mbs; i++) { 729596b8d2eSBarry Smith for (j=ai[i]; j<ai[i+1]; j++) { 7300bdbc534SSatish Balay row = i+rstart; 7310bdbc534SSatish Balay col = aj[j]+cstart; 732596b8d2eSBarry Smith 733187ce0cbSSatish Balay key = row*Nbs + col + 1; 734fca92195SBarry Smith h1 = HASH(ht_size,key,tmp); 735fca92195SBarry Smith for (k=0; k<ht_size; k++) { 736fca92195SBarry Smith if (!HT[(h1+k)%ht_size]) { 737fca92195SBarry Smith HT[(h1+k)%ht_size] = key; 738fca92195SBarry Smith HD[(h1+k)%ht_size] = a->a + j*bs2; 739596b8d2eSBarry Smith break; 7406cf91177SBarry Smith #if defined(PETSC_USE_INFO) 741187ce0cbSSatish Balay } else { 742187ce0cbSSatish Balay ct++; 743187ce0cbSSatish Balay #endif 744596b8d2eSBarry Smith } 745187ce0cbSSatish Balay } 7466cf91177SBarry Smith #if defined(PETSC_USE_INFO) 747187ce0cbSSatish Balay if (k> max) max = k; 748187ce0cbSSatish Balay #endif 749596b8d2eSBarry Smith } 750596b8d2eSBarry Smith } 751596b8d2eSBarry Smith /* Loop Over B */ 7520bdbc534SSatish Balay for (i=0; i<b->mbs; i++) { 753596b8d2eSBarry Smith for (j=bi[i]; j<bi[i+1]; j++) { 7540bdbc534SSatish Balay row = i+rstart; 7550bdbc534SSatish Balay col = garray[bj[j]]; 756187ce0cbSSatish Balay key = row*Nbs + col + 1; 757fca92195SBarry Smith h1 = HASH(ht_size,key,tmp); 758fca92195SBarry Smith for (k=0; k<ht_size; k++) { 759fca92195SBarry Smith if (!HT[(h1+k)%ht_size]) { 760fca92195SBarry Smith HT[(h1+k)%ht_size] = key; 761fca92195SBarry Smith HD[(h1+k)%ht_size] = b->a + j*bs2; 762596b8d2eSBarry Smith break; 7636cf91177SBarry Smith #if defined(PETSC_USE_INFO) 764187ce0cbSSatish Balay } else { 765187ce0cbSSatish Balay ct++; 766187ce0cbSSatish Balay #endif 767596b8d2eSBarry Smith } 768187ce0cbSSatish Balay } 7696cf91177SBarry Smith #if defined(PETSC_USE_INFO) 770187ce0cbSSatish Balay if (k> max) max = k; 771187ce0cbSSatish Balay #endif 772596b8d2eSBarry Smith } 773596b8d2eSBarry Smith } 774596b8d2eSBarry Smith 775596b8d2eSBarry Smith /* Print Summary */ 7766cf91177SBarry Smith #if defined(PETSC_USE_INFO) 777fca92195SBarry Smith for (i=0,j=0; i<ht_size; i++) { 77826fbe8dcSKarl Rupp if (HT[i]) j++; 779c38d4ed2SBarry Smith } 7801e2582c4SBarry Smith ierr = PetscInfo2(mat,"Average Search = %5.2f,max search = %D\n",(!j)? 0.0:((PetscReal)(ct+j))/j,max);CHKERRQ(ierr); 781187ce0cbSSatish Balay #endif 7823a40ed3dSBarry Smith PetscFunctionReturn(0); 783596b8d2eSBarry Smith } 78457b952d6SSatish Balay 7854a2ae208SSatish Balay #undef __FUNCT__ 7864a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyBegin_MPIBAIJ" 787dfbe8321SBarry Smith PetscErrorCode MatAssemblyBegin_MPIBAIJ(Mat mat,MatAssemblyType mode) 788bbb85fb3SSatish Balay { 789bbb85fb3SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 790dfbe8321SBarry Smith PetscErrorCode ierr; 791b24ad042SBarry Smith PetscInt nstash,reallocs; 792bbb85fb3SSatish Balay 793bbb85fb3SSatish Balay PetscFunctionBegin; 79426fbe8dcSKarl Rupp if (baij->donotstash || mat->nooffprocentries) PetscFunctionReturn(0); 795bbb85fb3SSatish Balay 796d0f46423SBarry Smith ierr = MatStashScatterBegin_Private(mat,&mat->stash,mat->rmap->range);CHKERRQ(ierr); 7971e2582c4SBarry Smith ierr = MatStashScatterBegin_Private(mat,&mat->bstash,baij->rangebs);CHKERRQ(ierr); 7988798bf22SSatish Balay ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr); 7991e2582c4SBarry Smith ierr = PetscInfo2(mat,"Stash has %D entries,uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr); 80046680499SSatish Balay ierr = MatStashGetInfo_Private(&mat->bstash,&nstash,&reallocs);CHKERRQ(ierr); 8011e2582c4SBarry Smith ierr = PetscInfo2(mat,"Block-Stash has %D entries, uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr); 802bbb85fb3SSatish Balay PetscFunctionReturn(0); 803bbb85fb3SSatish Balay } 804bbb85fb3SSatish Balay 8054a2ae208SSatish Balay #undef __FUNCT__ 8064a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyEnd_MPIBAIJ" 807dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_MPIBAIJ(Mat mat,MatAssemblyType mode) 808bbb85fb3SSatish Balay { 809bbb85fb3SSatish Balay Mat_MPIBAIJ *baij=(Mat_MPIBAIJ*)mat->data; 81091c97fd4SSatish Balay Mat_SeqBAIJ *a =(Mat_SeqBAIJ*)baij->A->data; 8116849ba73SBarry Smith PetscErrorCode ierr; 812b24ad042SBarry Smith PetscInt i,j,rstart,ncols,flg,bs2=baij->bs2; 813e44c0bd4SBarry Smith PetscInt *row,*col; 814ace3abfcSBarry Smith PetscBool r1,r2,r3,other_disassembled; 8153eda8832SBarry Smith MatScalar *val; 816b24ad042SBarry Smith PetscMPIInt n; 817bbb85fb3SSatish Balay 818bbb85fb3SSatish Balay PetscFunctionBegin; 8195fd66863SKarl Rupp /* do not use 'b=(Mat_SeqBAIJ*)baij->B->data' as B can be reset in disassembly */ 8204cb17eb5SBarry Smith if (!baij->donotstash && !mat->nooffprocentries) { 821a2d1c673SSatish Balay while (1) { 8228798bf22SSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 823a2d1c673SSatish Balay if (!flg) break; 824a2d1c673SSatish Balay 825bbb85fb3SSatish Balay for (i=0; i<n;) { 826bbb85fb3SSatish Balay /* Now identify the consecutive vals belonging to the same row */ 82726fbe8dcSKarl Rupp for (j=i,rstart=row[j]; j<n; j++) { 82826fbe8dcSKarl Rupp if (row[j] != rstart) break; 82926fbe8dcSKarl Rupp } 830bbb85fb3SSatish Balay if (j < n) ncols = j-i; 831bbb85fb3SSatish Balay else ncols = n-i; 832bbb85fb3SSatish Balay /* Now assemble all these values with a single function call */ 833*4b4eb8d3SJed Brown ierr = MatSetValues_MPIBAIJ(mat,1,row+i,ncols,col+i,val+i,mat->insertmode);CHKERRQ(ierr); 834bbb85fb3SSatish Balay i = j; 835bbb85fb3SSatish Balay } 836bbb85fb3SSatish Balay } 8378798bf22SSatish Balay ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr); 838a2d1c673SSatish Balay /* Now process the block-stash. Since the values are stashed column-oriented, 839a2d1c673SSatish Balay set the roworiented flag to column oriented, and after MatSetValues() 840a2d1c673SSatish Balay restore the original flags */ 841a2d1c673SSatish Balay r1 = baij->roworiented; 842a2d1c673SSatish Balay r2 = a->roworiented; 84391c97fd4SSatish Balay r3 = ((Mat_SeqBAIJ*)baij->B->data)->roworiented; 84426fbe8dcSKarl Rupp 8457c922b88SBarry Smith baij->roworiented = PETSC_FALSE; 8467c922b88SBarry Smith a->roworiented = PETSC_FALSE; 84726fbe8dcSKarl Rupp 84891c97fd4SSatish Balay (((Mat_SeqBAIJ*)baij->B->data))->roworiented = PETSC_FALSE; /* b->roworiented */ 849a2d1c673SSatish Balay while (1) { 8508798bf22SSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->bstash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 851a2d1c673SSatish Balay if (!flg) break; 852a2d1c673SSatish Balay 853a2d1c673SSatish Balay for (i=0; i<n;) { 854a2d1c673SSatish Balay /* Now identify the consecutive vals belonging to the same row */ 85526fbe8dcSKarl Rupp for (j=i,rstart=row[j]; j<n; j++) { 85626fbe8dcSKarl Rupp if (row[j] != rstart) break; 85726fbe8dcSKarl Rupp } 858a2d1c673SSatish Balay if (j < n) ncols = j-i; 859a2d1c673SSatish Balay else ncols = n-i; 860*4b4eb8d3SJed Brown ierr = MatSetValuesBlocked_MPIBAIJ(mat,1,row+i,ncols,col+i,val+i*bs2,mat->insertmode);CHKERRQ(ierr); 861a2d1c673SSatish Balay i = j; 862a2d1c673SSatish Balay } 863a2d1c673SSatish Balay } 8648798bf22SSatish Balay ierr = MatStashScatterEnd_Private(&mat->bstash);CHKERRQ(ierr); 86526fbe8dcSKarl Rupp 866a2d1c673SSatish Balay baij->roworiented = r1; 867a2d1c673SSatish Balay a->roworiented = r2; 86826fbe8dcSKarl Rupp 86991c97fd4SSatish Balay ((Mat_SeqBAIJ*)baij->B->data)->roworiented = r3; /* b->roworiented */ 870bbb85fb3SSatish Balay } 871bbb85fb3SSatish Balay 872bbb85fb3SSatish Balay ierr = MatAssemblyBegin(baij->A,mode);CHKERRQ(ierr); 873bbb85fb3SSatish Balay ierr = MatAssemblyEnd(baij->A,mode);CHKERRQ(ierr); 874bbb85fb3SSatish Balay 875bbb85fb3SSatish Balay /* determine if any processor has disassembled, if so we must 876bbb85fb3SSatish Balay also disassemble ourselfs, in order that we may reassemble. */ 877bbb85fb3SSatish Balay /* 878bbb85fb3SSatish Balay if nonzero structure of submatrix B cannot change then we know that 879bbb85fb3SSatish Balay no processor disassembled thus we can skip this stuff 880bbb85fb3SSatish Balay */ 881bbb85fb3SSatish Balay if (!((Mat_SeqBAIJ*)baij->B->data)->nonew) { 882ce94432eSBarry Smith ierr = MPI_Allreduce(&mat->was_assembled,&other_disassembled,1,MPIU_BOOL,MPI_PROD,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 883bbb85fb3SSatish Balay if (mat->was_assembled && !other_disassembled) { 884ab9863d7SBarry Smith ierr = MatDisAssemble_MPIBAIJ(mat);CHKERRQ(ierr); 885bbb85fb3SSatish Balay } 886bbb85fb3SSatish Balay } 887bbb85fb3SSatish Balay 888bbb85fb3SSatish Balay if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) { 889bbb85fb3SSatish Balay ierr = MatSetUpMultiply_MPIBAIJ(mat);CHKERRQ(ierr); 890bbb85fb3SSatish Balay } 891bbb85fb3SSatish Balay ierr = MatAssemblyBegin(baij->B,mode);CHKERRQ(ierr); 892bbb85fb3SSatish Balay ierr = MatAssemblyEnd(baij->B,mode);CHKERRQ(ierr); 893bbb85fb3SSatish Balay 8946cf91177SBarry Smith #if defined(PETSC_USE_INFO) 895bbb85fb3SSatish Balay if (baij->ht && mode== MAT_FINAL_ASSEMBLY) { 8961e2582c4SBarry Smith ierr = PetscInfo1(mat,"Average Hash Table Search in MatSetValues = %5.2f\n",((PetscReal)baij->ht_total_ct)/baij->ht_insert_ct);CHKERRQ(ierr); 89726fbe8dcSKarl Rupp 898bbb85fb3SSatish Balay baij->ht_total_ct = 0; 899bbb85fb3SSatish Balay baij->ht_insert_ct = 0; 900bbb85fb3SSatish Balay } 901bbb85fb3SSatish Balay #endif 902bbb85fb3SSatish Balay if (baij->ht_flag && !baij->ht && mode == MAT_FINAL_ASSEMBLY) { 903bbb85fb3SSatish Balay ierr = MatCreateHashTable_MPIBAIJ_Private(mat,baij->ht_fact);CHKERRQ(ierr); 90426fbe8dcSKarl Rupp 905bbb85fb3SSatish Balay mat->ops->setvalues = MatSetValues_MPIBAIJ_HT; 906bbb85fb3SSatish Balay mat->ops->setvaluesblocked = MatSetValuesBlocked_MPIBAIJ_HT; 907bbb85fb3SSatish Balay } 908bbb85fb3SSatish Balay 909fca92195SBarry Smith ierr = PetscFree2(baij->rowvalues,baij->rowindices);CHKERRQ(ierr); 91026fbe8dcSKarl Rupp 911606d414cSSatish Balay baij->rowvalues = 0; 9124f9cfa9eSBarry Smith 9134f9cfa9eSBarry Smith /* if no new nonzero locations are allowed in matrix then only set the matrix state the first time through */ 9144f9cfa9eSBarry Smith if ((!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) || !((Mat_SeqBAIJ*)(baij->A->data))->nonew) { 915e56f5c9eSBarry Smith PetscObjectState state = baij->A->nonzerostate + baij->B->nonzerostate; 91609e82e2bSBarry Smith ierr = MPI_Allreduce(&state,&mat->nonzerostate,1,MPIU_INT64,MPI_SUM,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 917e56f5c9eSBarry Smith } 918bbb85fb3SSatish Balay PetscFunctionReturn(0); 919bbb85fb3SSatish Balay } 92057b952d6SSatish Balay 9217da1fb6eSBarry Smith extern PetscErrorCode MatView_SeqBAIJ(Mat,PetscViewer); 9229804daf3SBarry Smith #include <petscdraw.h> 9234a2ae208SSatish Balay #undef __FUNCT__ 9244a2ae208SSatish Balay #define __FUNCT__ "MatView_MPIBAIJ_ASCIIorDraworSocket" 9256849ba73SBarry Smith static PetscErrorCode MatView_MPIBAIJ_ASCIIorDraworSocket(Mat mat,PetscViewer viewer) 92657b952d6SSatish Balay { 92757b952d6SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 928dfbe8321SBarry Smith PetscErrorCode ierr; 9297da1fb6eSBarry Smith PetscMPIInt rank = baij->rank; 930d0f46423SBarry Smith PetscInt bs = mat->rmap->bs; 931ace3abfcSBarry Smith PetscBool iascii,isdraw; 932b0a32e0cSBarry Smith PetscViewer sviewer; 933f3ef73ceSBarry Smith PetscViewerFormat format; 93457b952d6SSatish Balay 935d64ed03dSBarry Smith PetscFunctionBegin; 936251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr); 937251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr); 93832077d6dSBarry Smith if (iascii) { 939b0a32e0cSBarry Smith ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr); 940456192e2SBarry Smith if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 9414e220ebcSLois Curfman McInnes MatInfo info; 942ce94432eSBarry Smith ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)mat),&rank);CHKERRQ(ierr); 943d41123aaSBarry Smith ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr); 9447b23a99aSBarry Smith ierr = PetscViewerASCIISynchronizedAllow(viewer,PETSC_TRUE);CHKERRQ(ierr); 94577431f27SBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Local rows %D nz %D nz alloced %D bs %D mem %D\n", 94616608c43SJed Brown rank,mat->rmap->n,(PetscInt)info.nz_used,(PetscInt)info.nz_allocated,mat->rmap->bs,(PetscInt)info.memory);CHKERRQ(ierr); 947d132466eSBarry Smith ierr = MatGetInfo(baij->A,MAT_LOCAL,&info);CHKERRQ(ierr); 948e6dd01d4SJed Brown ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] on-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used);CHKERRQ(ierr); 949d132466eSBarry Smith ierr = MatGetInfo(baij->B,MAT_LOCAL,&info);CHKERRQ(ierr); 950e6dd01d4SJed Brown ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] off-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used);CHKERRQ(ierr); 951b0a32e0cSBarry Smith ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 9527b23a99aSBarry Smith ierr = PetscViewerASCIISynchronizedAllow(viewer,PETSC_FALSE);CHKERRQ(ierr); 95307d81ca4SBarry Smith ierr = PetscViewerASCIIPrintf(viewer,"Information on VecScatter used in matrix-vector product: \n");CHKERRQ(ierr); 95457b952d6SSatish Balay ierr = VecScatterView(baij->Mvctx,viewer);CHKERRQ(ierr); 9553a40ed3dSBarry Smith PetscFunctionReturn(0); 956fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_INFO) { 95777431f27SBarry Smith ierr = PetscViewerASCIIPrintf(viewer," block size is %D\n",bs);CHKERRQ(ierr); 9583a40ed3dSBarry Smith PetscFunctionReturn(0); 95904929863SHong Zhang } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) { 96004929863SHong Zhang PetscFunctionReturn(0); 96157b952d6SSatish Balay } 96257b952d6SSatish Balay } 96357b952d6SSatish Balay 9640f5bd95cSBarry Smith if (isdraw) { 965b0a32e0cSBarry Smith PetscDraw draw; 966ace3abfcSBarry Smith PetscBool isnull; 967b0a32e0cSBarry Smith ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr); 968b0a32e0cSBarry Smith ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); if (isnull) PetscFunctionReturn(0); 96957b952d6SSatish Balay } 97057b952d6SSatish Balay 9717da1fb6eSBarry Smith { 97257b952d6SSatish Balay /* assemble the entire matrix onto first processor. */ 97357b952d6SSatish Balay Mat A; 97457b952d6SSatish Balay Mat_SeqBAIJ *Aloc; 975d0f46423SBarry Smith PetscInt M = mat->rmap->N,N = mat->cmap->N,*ai,*aj,col,i,j,k,*rvals,mbs = baij->mbs; 9763eda8832SBarry Smith MatScalar *a; 9773e219373SBarry Smith const char *matname; 97857b952d6SSatish Balay 979f204ca49SKris Buschelman /* Here we are creating a temporary matrix, so will assume MPIBAIJ is acceptable */ 980f204ca49SKris Buschelman /* Perhaps this should be the type of mat? */ 981ce94432eSBarry Smith ierr = MatCreate(PetscObjectComm((PetscObject)mat),&A);CHKERRQ(ierr); 98257b952d6SSatish Balay if (!rank) { 983f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,M,N,M,N);CHKERRQ(ierr); 984d64ed03dSBarry Smith } else { 985f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,0,0,M,N);CHKERRQ(ierr); 98657b952d6SSatish Balay } 987f204ca49SKris Buschelman ierr = MatSetType(A,MATMPIBAIJ);CHKERRQ(ierr); 9880298fd71SBarry Smith ierr = MatMPIBAIJSetPreallocation(A,mat->rmap->bs,0,NULL,0,NULL);CHKERRQ(ierr); 9892b82e772SSatish Balay ierr = MatSetOption(A,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_FALSE);CHKERRQ(ierr); 9903bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)A);CHKERRQ(ierr); 99157b952d6SSatish Balay 99257b952d6SSatish Balay /* copy over the A part */ 99357b952d6SSatish Balay Aloc = (Mat_SeqBAIJ*)baij->A->data; 99457b952d6SSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 995785e854fSJed Brown ierr = PetscMalloc1(bs,&rvals);CHKERRQ(ierr); 99657b952d6SSatish Balay 99757b952d6SSatish Balay for (i=0; i<mbs; i++) { 998899cda47SBarry Smith rvals[0] = bs*(baij->rstartbs + i); 99926fbe8dcSKarl Rupp for (j=1; j<bs; j++) rvals[j] = rvals[j-1] + 1; 100057b952d6SSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 1001899cda47SBarry Smith col = (baij->cstartbs+aj[j])*bs; 100257b952d6SSatish Balay for (k=0; k<bs; k++) { 100397e5c40aSBarry Smith ierr = MatSetValues_MPIBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 1004cee3aa6bSSatish Balay col++; a += bs; 100557b952d6SSatish Balay } 100657b952d6SSatish Balay } 100757b952d6SSatish Balay } 100857b952d6SSatish Balay /* copy over the B part */ 100957b952d6SSatish Balay Aloc = (Mat_SeqBAIJ*)baij->B->data; 101057b952d6SSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 101157b952d6SSatish Balay for (i=0; i<mbs; i++) { 1012899cda47SBarry Smith rvals[0] = bs*(baij->rstartbs + i); 101326fbe8dcSKarl Rupp for (j=1; j<bs; j++) rvals[j] = rvals[j-1] + 1; 101457b952d6SSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 101557b952d6SSatish Balay col = baij->garray[aj[j]]*bs; 101657b952d6SSatish Balay for (k=0; k<bs; k++) { 101797e5c40aSBarry Smith ierr = MatSetValues_MPIBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 1018cee3aa6bSSatish Balay col++; a += bs; 101957b952d6SSatish Balay } 102057b952d6SSatish Balay } 102157b952d6SSatish Balay } 1022606d414cSSatish Balay ierr = PetscFree(rvals);CHKERRQ(ierr); 10236d4a8577SBarry Smith ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 10246d4a8577SBarry Smith ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 102555843e3eSBarry Smith /* 102655843e3eSBarry Smith Everyone has to call to draw the matrix since the graphics waits are 1027b0a32e0cSBarry Smith synchronized across all processors that share the PetscDraw object 102855843e3eSBarry Smith */ 1029b0a32e0cSBarry Smith ierr = PetscViewerGetSingleton(viewer,&sviewer);CHKERRQ(ierr); 1030ade3a672SBarry Smith ierr = PetscObjectGetName((PetscObject)mat,&matname);CHKERRQ(ierr); 10313e219373SBarry Smith if (!rank) { 1032ade3a672SBarry Smith ierr = PetscObjectSetName((PetscObject)((Mat_MPIBAIJ*)(A->data))->A,matname);CHKERRQ(ierr); 10337da1fb6eSBarry Smith ierr = MatView_SeqBAIJ(((Mat_MPIBAIJ*)(A->data))->A,sviewer);CHKERRQ(ierr); 103457b952d6SSatish Balay } 1035b0a32e0cSBarry Smith ierr = PetscViewerRestoreSingleton(viewer,&sviewer);CHKERRQ(ierr); 10366bf464f9SBarry Smith ierr = MatDestroy(&A);CHKERRQ(ierr); 103757b952d6SSatish Balay } 10383a40ed3dSBarry Smith PetscFunctionReturn(0); 103957b952d6SSatish Balay } 104057b952d6SSatish Balay 10414a2ae208SSatish Balay #undef __FUNCT__ 1042660746e0SBarry Smith #define __FUNCT__ "MatView_MPIBAIJ_Binary" 1043660746e0SBarry Smith static PetscErrorCode MatView_MPIBAIJ_Binary(Mat mat,PetscViewer viewer) 1044660746e0SBarry Smith { 1045660746e0SBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)mat->data; 1046660746e0SBarry Smith Mat_SeqBAIJ *A = (Mat_SeqBAIJ*)a->A->data; 1047660746e0SBarry Smith Mat_SeqBAIJ *B = (Mat_SeqBAIJ*)a->B->data; 1048660746e0SBarry Smith PetscErrorCode ierr; 10495f48b12bSBarry Smith PetscInt i,*row_lens,*crow_lens,bs = mat->rmap->bs,j,k,bs2=a->bs2,header[4],nz,rlen; 1050e96a6426SSatish Balay PetscInt *range=0,nzmax,*column_indices,cnt,col,*garray = a->garray,cstart = mat->cmap->rstart/bs,len,pcnt,l,ll; 1051660746e0SBarry Smith int fd; 1052660746e0SBarry Smith PetscScalar *column_values; 1053660746e0SBarry Smith FILE *file; 1054660746e0SBarry Smith PetscMPIInt rank,size,tag = ((PetscObject)viewer)->tag; 1055638eb2ebSBarry Smith PetscInt message_count,flowcontrolcount; 1056660746e0SBarry Smith 1057660746e0SBarry Smith PetscFunctionBegin; 1058ce94432eSBarry Smith ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)mat),&rank);CHKERRQ(ierr); 1059ce94432eSBarry Smith ierr = MPI_Comm_size(PetscObjectComm((PetscObject)mat),&size);CHKERRQ(ierr); 1060660746e0SBarry Smith nz = bs2*(A->nz + B->nz); 1061660746e0SBarry Smith rlen = mat->rmap->n; 1062660746e0SBarry Smith if (!rank) { 1063660746e0SBarry Smith header[0] = MAT_FILE_CLASSID; 1064660746e0SBarry Smith header[1] = mat->rmap->N; 1065660746e0SBarry Smith header[2] = mat->cmap->N; 106626fbe8dcSKarl Rupp 1067ce94432eSBarry Smith ierr = MPI_Reduce(&nz,&header[3],1,MPIU_INT,MPI_SUM,0,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 1068660746e0SBarry Smith ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr); 1069660746e0SBarry Smith ierr = PetscBinaryWrite(fd,header,4,PETSC_INT,PETSC_TRUE);CHKERRQ(ierr); 1070660746e0SBarry Smith /* get largest number of rows any processor has */ 1071660746e0SBarry Smith range = mat->rmap->range; 1072660746e0SBarry Smith for (i=1; i<size; i++) { 1073660746e0SBarry Smith rlen = PetscMax(rlen,range[i+1] - range[i]); 1074660746e0SBarry Smith } 1075660746e0SBarry Smith } else { 1076ce94432eSBarry Smith ierr = MPI_Reduce(&nz,0,1,MPIU_INT,MPI_SUM,0,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 1077660746e0SBarry Smith } 1078660746e0SBarry Smith 1079785e854fSJed Brown ierr = PetscMalloc1((rlen/bs),&crow_lens);CHKERRQ(ierr); 1080660746e0SBarry Smith /* compute lengths of each row */ 1081660746e0SBarry Smith for (i=0; i<a->mbs; i++) { 1082660746e0SBarry Smith crow_lens[i] = A->i[i+1] - A->i[i] + B->i[i+1] - B->i[i]; 1083660746e0SBarry Smith } 1084660746e0SBarry Smith /* store the row lengths to the file */ 1085638eb2ebSBarry Smith ierr = PetscViewerFlowControlStart(viewer,&message_count,&flowcontrolcount);CHKERRQ(ierr); 1086660746e0SBarry Smith if (!rank) { 1087660746e0SBarry Smith MPI_Status status; 1088785e854fSJed Brown ierr = PetscMalloc1(rlen,&row_lens);CHKERRQ(ierr); 1089660746e0SBarry Smith rlen = (range[1] - range[0])/bs; 1090660746e0SBarry Smith for (i=0; i<rlen; i++) { 1091660746e0SBarry Smith for (j=0; j<bs; j++) { 1092660746e0SBarry Smith row_lens[i*bs+j] = bs*crow_lens[i]; 1093660746e0SBarry Smith } 1094660746e0SBarry Smith } 1095660746e0SBarry Smith ierr = PetscBinaryWrite(fd,row_lens,bs*rlen,PETSC_INT,PETSC_TRUE);CHKERRQ(ierr); 1096660746e0SBarry Smith for (i=1; i<size; i++) { 1097660746e0SBarry Smith rlen = (range[i+1] - range[i])/bs; 1098639ff905SBarry Smith ierr = PetscViewerFlowControlStepMaster(viewer,i,&message_count,flowcontrolcount);CHKERRQ(ierr); 1099ce94432eSBarry Smith ierr = MPI_Recv(crow_lens,rlen,MPIU_INT,i,tag,PetscObjectComm((PetscObject)mat),&status);CHKERRQ(ierr); 1100660746e0SBarry Smith for (k=0; k<rlen; k++) { 1101660746e0SBarry Smith for (j=0; j<bs; j++) { 1102660746e0SBarry Smith row_lens[k*bs+j] = bs*crow_lens[k]; 1103660746e0SBarry Smith } 1104660746e0SBarry Smith } 1105660746e0SBarry Smith ierr = PetscBinaryWrite(fd,row_lens,bs*rlen,PETSC_INT,PETSC_TRUE);CHKERRQ(ierr); 1106660746e0SBarry Smith } 1107639ff905SBarry Smith ierr = PetscViewerFlowControlEndMaster(viewer,&message_count);CHKERRQ(ierr); 1108660746e0SBarry Smith ierr = PetscFree(row_lens);CHKERRQ(ierr); 1109660746e0SBarry Smith } else { 1110639ff905SBarry Smith ierr = PetscViewerFlowControlStepWorker(viewer,rank,&message_count);CHKERRQ(ierr); 1111ce94432eSBarry Smith ierr = MPI_Send(crow_lens,mat->rmap->n/bs,MPIU_INT,0,tag,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 1112639ff905SBarry Smith ierr = PetscViewerFlowControlEndWorker(viewer,&message_count);CHKERRQ(ierr); 1113660746e0SBarry Smith } 1114660746e0SBarry Smith ierr = PetscFree(crow_lens);CHKERRQ(ierr); 1115660746e0SBarry Smith 1116660746e0SBarry Smith /* load up the local column indices. Include for all rows not just one for each block row since process 0 does not have the 1117660746e0SBarry Smith information needed to make it for each row from a block row. This does require more communication but still not more than 1118660746e0SBarry Smith the communication needed for the nonzero values */ 1119660746e0SBarry Smith nzmax = nz; /* space a largest processor needs */ 1120ce94432eSBarry Smith ierr = MPI_Reduce(&nz,&nzmax,1,MPIU_INT,MPI_MAX,0,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 1121785e854fSJed Brown ierr = PetscMalloc1(nzmax,&column_indices);CHKERRQ(ierr); 1122660746e0SBarry Smith cnt = 0; 1123660746e0SBarry Smith for (i=0; i<a->mbs; i++) { 1124660746e0SBarry Smith pcnt = cnt; 1125660746e0SBarry Smith for (j=B->i[i]; j<B->i[i+1]; j++) { 1126660746e0SBarry Smith if ((col = garray[B->j[j]]) > cstart) break; 1127660746e0SBarry Smith for (l=0; l<bs; l++) { 1128660746e0SBarry Smith column_indices[cnt++] = bs*col+l; 1129660746e0SBarry Smith } 1130660746e0SBarry Smith } 1131660746e0SBarry Smith for (k=A->i[i]; k<A->i[i+1]; k++) { 1132660746e0SBarry Smith for (l=0; l<bs; l++) { 1133660746e0SBarry Smith column_indices[cnt++] = bs*(A->j[k] + cstart)+l; 1134660746e0SBarry Smith } 1135660746e0SBarry Smith } 1136660746e0SBarry Smith for (; j<B->i[i+1]; j++) { 1137660746e0SBarry Smith for (l=0; l<bs; l++) { 1138660746e0SBarry Smith column_indices[cnt++] = bs*garray[B->j[j]]+l; 1139660746e0SBarry Smith } 1140660746e0SBarry Smith } 1141660746e0SBarry Smith len = cnt - pcnt; 1142660746e0SBarry Smith for (k=1; k<bs; k++) { 1143660746e0SBarry Smith ierr = PetscMemcpy(&column_indices[cnt],&column_indices[pcnt],len*sizeof(PetscInt));CHKERRQ(ierr); 1144660746e0SBarry Smith cnt += len; 1145660746e0SBarry Smith } 1146660746e0SBarry Smith } 1147660746e0SBarry Smith if (cnt != nz) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_LIB,"Internal PETSc error: cnt = %D nz = %D",cnt,nz); 1148660746e0SBarry Smith 1149660746e0SBarry Smith /* store the columns to the file */ 1150638eb2ebSBarry Smith ierr = PetscViewerFlowControlStart(viewer,&message_count,&flowcontrolcount);CHKERRQ(ierr); 1151660746e0SBarry Smith if (!rank) { 1152660746e0SBarry Smith MPI_Status status; 1153660746e0SBarry Smith ierr = PetscBinaryWrite(fd,column_indices,nz,PETSC_INT,PETSC_TRUE);CHKERRQ(ierr); 1154660746e0SBarry Smith for (i=1; i<size; i++) { 1155639ff905SBarry Smith ierr = PetscViewerFlowControlStepMaster(viewer,i,&message_count,flowcontrolcount);CHKERRQ(ierr); 1156ce94432eSBarry Smith ierr = MPI_Recv(&cnt,1,MPIU_INT,i,tag,PetscObjectComm((PetscObject)mat),&status);CHKERRQ(ierr); 1157ce94432eSBarry Smith ierr = MPI_Recv(column_indices,cnt,MPIU_INT,i,tag,PetscObjectComm((PetscObject)mat),&status);CHKERRQ(ierr); 1158660746e0SBarry Smith ierr = PetscBinaryWrite(fd,column_indices,cnt,PETSC_INT,PETSC_TRUE);CHKERRQ(ierr); 1159660746e0SBarry Smith } 1160639ff905SBarry Smith ierr = PetscViewerFlowControlEndMaster(viewer,&message_count);CHKERRQ(ierr); 1161660746e0SBarry Smith } else { 1162639ff905SBarry Smith ierr = PetscViewerFlowControlStepWorker(viewer,rank,&message_count);CHKERRQ(ierr); 1163ce94432eSBarry Smith ierr = MPI_Send(&cnt,1,MPIU_INT,0,tag,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 1164ce94432eSBarry Smith ierr = MPI_Send(column_indices,cnt,MPIU_INT,0,tag,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 1165639ff905SBarry Smith ierr = PetscViewerFlowControlEndWorker(viewer,&message_count);CHKERRQ(ierr); 1166660746e0SBarry Smith } 1167660746e0SBarry Smith ierr = PetscFree(column_indices);CHKERRQ(ierr); 1168660746e0SBarry Smith 1169660746e0SBarry Smith /* load up the numerical values */ 1170785e854fSJed Brown ierr = PetscMalloc1(nzmax,&column_values);CHKERRQ(ierr); 1171660746e0SBarry Smith cnt = 0; 1172660746e0SBarry Smith for (i=0; i<a->mbs; i++) { 1173660746e0SBarry Smith rlen = bs*(B->i[i+1] - B->i[i] + A->i[i+1] - A->i[i]); 1174660746e0SBarry Smith for (j=B->i[i]; j<B->i[i+1]; j++) { 1175660746e0SBarry Smith if (garray[B->j[j]] > cstart) break; 1176660746e0SBarry Smith for (l=0; l<bs; l++) { 1177660746e0SBarry Smith for (ll=0; ll<bs; ll++) { 1178660746e0SBarry Smith column_values[cnt + l*rlen + ll] = B->a[bs2*j+l+bs*ll]; 1179660746e0SBarry Smith } 1180660746e0SBarry Smith } 1181660746e0SBarry Smith cnt += bs; 1182660746e0SBarry Smith } 1183660746e0SBarry Smith for (k=A->i[i]; k<A->i[i+1]; k++) { 1184660746e0SBarry Smith for (l=0; l<bs; l++) { 1185660746e0SBarry Smith for (ll=0; ll<bs; ll++) { 1186660746e0SBarry Smith column_values[cnt + l*rlen + ll] = A->a[bs2*k+l+bs*ll]; 1187660746e0SBarry Smith } 1188660746e0SBarry Smith } 1189660746e0SBarry Smith cnt += bs; 1190660746e0SBarry Smith } 1191660746e0SBarry Smith for (; j<B->i[i+1]; j++) { 1192660746e0SBarry Smith for (l=0; l<bs; l++) { 1193660746e0SBarry Smith for (ll=0; ll<bs; ll++) { 1194660746e0SBarry Smith column_values[cnt + l*rlen + ll] = B->a[bs2*j+l+bs*ll]; 1195660746e0SBarry Smith } 1196660746e0SBarry Smith } 1197660746e0SBarry Smith cnt += bs; 1198660746e0SBarry Smith } 1199660746e0SBarry Smith cnt += (bs-1)*rlen; 1200660746e0SBarry Smith } 1201660746e0SBarry Smith if (cnt != nz) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Internal PETSc error: cnt = %D nz = %D",cnt,nz); 1202660746e0SBarry Smith 1203660746e0SBarry Smith /* store the column values to the file */ 1204638eb2ebSBarry Smith ierr = PetscViewerFlowControlStart(viewer,&message_count,&flowcontrolcount);CHKERRQ(ierr); 1205660746e0SBarry Smith if (!rank) { 1206660746e0SBarry Smith MPI_Status status; 1207660746e0SBarry Smith ierr = PetscBinaryWrite(fd,column_values,nz,PETSC_SCALAR,PETSC_TRUE);CHKERRQ(ierr); 1208660746e0SBarry Smith for (i=1; i<size; i++) { 1209639ff905SBarry Smith ierr = PetscViewerFlowControlStepMaster(viewer,i,&message_count,flowcontrolcount);CHKERRQ(ierr); 1210ce94432eSBarry Smith ierr = MPI_Recv(&cnt,1,MPIU_INT,i,tag,PetscObjectComm((PetscObject)mat),&status);CHKERRQ(ierr); 1211ce94432eSBarry Smith ierr = MPI_Recv(column_values,cnt,MPIU_SCALAR,i,tag,PetscObjectComm((PetscObject)mat),&status);CHKERRQ(ierr); 1212660746e0SBarry Smith ierr = PetscBinaryWrite(fd,column_values,cnt,PETSC_SCALAR,PETSC_TRUE);CHKERRQ(ierr); 1213660746e0SBarry Smith } 1214639ff905SBarry Smith ierr = PetscViewerFlowControlEndMaster(viewer,&message_count);CHKERRQ(ierr); 1215660746e0SBarry Smith } else { 1216639ff905SBarry Smith ierr = PetscViewerFlowControlStepWorker(viewer,rank,&message_count);CHKERRQ(ierr); 1217ce94432eSBarry Smith ierr = MPI_Send(&nz,1,MPIU_INT,0,tag,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 1218ce94432eSBarry Smith ierr = MPI_Send(column_values,nz,MPIU_SCALAR,0,tag,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 1219639ff905SBarry Smith ierr = PetscViewerFlowControlEndWorker(viewer,&message_count);CHKERRQ(ierr); 1220660746e0SBarry Smith } 1221660746e0SBarry Smith ierr = PetscFree(column_values);CHKERRQ(ierr); 1222660746e0SBarry Smith 1223660746e0SBarry Smith ierr = PetscViewerBinaryGetInfoPointer(viewer,&file);CHKERRQ(ierr); 1224660746e0SBarry Smith if (file) { 1225660746e0SBarry Smith fprintf(file,"-matload_block_size %d\n",(int)mat->rmap->bs); 1226660746e0SBarry Smith } 1227660746e0SBarry Smith PetscFunctionReturn(0); 1228660746e0SBarry Smith } 1229660746e0SBarry Smith 1230660746e0SBarry Smith #undef __FUNCT__ 12314a2ae208SSatish Balay #define __FUNCT__ "MatView_MPIBAIJ" 1232dfbe8321SBarry Smith PetscErrorCode MatView_MPIBAIJ(Mat mat,PetscViewer viewer) 123357b952d6SSatish Balay { 1234dfbe8321SBarry Smith PetscErrorCode ierr; 1235ace3abfcSBarry Smith PetscBool iascii,isdraw,issocket,isbinary; 123657b952d6SSatish Balay 1237d64ed03dSBarry Smith PetscFunctionBegin; 1238251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr); 1239251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr); 1240251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERSOCKET,&issocket);CHKERRQ(ierr); 1241251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary);CHKERRQ(ierr); 1242660746e0SBarry Smith if (iascii || isdraw || issocket) { 12437b2a1423SBarry Smith ierr = MatView_MPIBAIJ_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr); 1244660746e0SBarry Smith } else if (isbinary) { 1245660746e0SBarry Smith ierr = MatView_MPIBAIJ_Binary(mat,viewer);CHKERRQ(ierr); 124657b952d6SSatish Balay } 12473a40ed3dSBarry Smith PetscFunctionReturn(0); 124857b952d6SSatish Balay } 124957b952d6SSatish Balay 12504a2ae208SSatish Balay #undef __FUNCT__ 12514a2ae208SSatish Balay #define __FUNCT__ "MatDestroy_MPIBAIJ" 1252dfbe8321SBarry Smith PetscErrorCode MatDestroy_MPIBAIJ(Mat mat) 125379bdfe76SSatish Balay { 125479bdfe76SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 1255dfbe8321SBarry Smith PetscErrorCode ierr; 125679bdfe76SSatish Balay 1257d64ed03dSBarry Smith PetscFunctionBegin; 1258aa482453SBarry Smith #if defined(PETSC_USE_LOG) 1259d0f46423SBarry Smith PetscLogObjectState((PetscObject)mat,"Rows=%D,Cols=%D",mat->rmap->N,mat->cmap->N); 126079bdfe76SSatish Balay #endif 12618798bf22SSatish Balay ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr); 12628798bf22SSatish Balay ierr = MatStashDestroy_Private(&mat->bstash);CHKERRQ(ierr); 12636bf464f9SBarry Smith ierr = MatDestroy(&baij->A);CHKERRQ(ierr); 12646bf464f9SBarry Smith ierr = MatDestroy(&baij->B);CHKERRQ(ierr); 1265aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 12666bc0bbbfSBarry Smith ierr = PetscTableDestroy(&baij->colmap);CHKERRQ(ierr); 126748e59246SSatish Balay #else 126805b42c5fSBarry Smith ierr = PetscFree(baij->colmap);CHKERRQ(ierr); 126948e59246SSatish Balay #endif 127005b42c5fSBarry Smith ierr = PetscFree(baij->garray);CHKERRQ(ierr); 12716bf464f9SBarry Smith ierr = VecDestroy(&baij->lvec);CHKERRQ(ierr); 12726bf464f9SBarry Smith ierr = VecScatterDestroy(&baij->Mvctx);CHKERRQ(ierr); 1273fca92195SBarry Smith ierr = PetscFree2(baij->rowvalues,baij->rowindices);CHKERRQ(ierr); 127405b42c5fSBarry Smith ierr = PetscFree(baij->barray);CHKERRQ(ierr); 1275fca92195SBarry Smith ierr = PetscFree2(baij->hd,baij->ht);CHKERRQ(ierr); 1276899cda47SBarry Smith ierr = PetscFree(baij->rangebs);CHKERRQ(ierr); 1277bf0cc555SLisandro Dalcin ierr = PetscFree(mat->data);CHKERRQ(ierr); 1278901853e0SKris Buschelman 1279dbd8c25aSHong Zhang ierr = PetscObjectChangeTypeName((PetscObject)mat,0);CHKERRQ(ierr); 1280bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatStoreValues_C",NULL);CHKERRQ(ierr); 1281bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatRetrieveValues_C",NULL);CHKERRQ(ierr); 1282bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatGetDiagonalBlock_C",NULL);CHKERRQ(ierr); 1283bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPIBAIJSetPreallocation_C",NULL);CHKERRQ(ierr); 1284bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPIBAIJSetPreallocationCSR_C",NULL);CHKERRQ(ierr); 1285bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDiagonalScaleLocal_C",NULL);CHKERRQ(ierr); 1286bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatSetHashTableFactor_C",NULL);CHKERRQ(ierr); 1287bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpibaij_mpisbaij_C",NULL);CHKERRQ(ierr); 1288bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpibaij_mpibstrm_C",NULL);CHKERRQ(ierr); 12893a40ed3dSBarry Smith PetscFunctionReturn(0); 129079bdfe76SSatish Balay } 129179bdfe76SSatish Balay 12924a2ae208SSatish Balay #undef __FUNCT__ 12934a2ae208SSatish Balay #define __FUNCT__ "MatMult_MPIBAIJ" 1294dfbe8321SBarry Smith PetscErrorCode MatMult_MPIBAIJ(Mat A,Vec xx,Vec yy) 1295cee3aa6bSSatish Balay { 1296cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1297dfbe8321SBarry Smith PetscErrorCode ierr; 1298b24ad042SBarry Smith PetscInt nt; 1299cee3aa6bSSatish Balay 1300d64ed03dSBarry Smith PetscFunctionBegin; 1301e1311b90SBarry Smith ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr); 1302e7e72b3dSBarry Smith if (nt != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx"); 1303e1311b90SBarry Smith ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr); 1304e7e72b3dSBarry Smith if (nt != A->rmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible parition of A and yy"); 1305ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1306f830108cSBarry Smith ierr = (*a->A->ops->mult)(a->A,xx,yy);CHKERRQ(ierr); 1307ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1308f830108cSBarry Smith ierr = (*a->B->ops->multadd)(a->B,a->lvec,yy,yy);CHKERRQ(ierr); 13093a40ed3dSBarry Smith PetscFunctionReturn(0); 1310cee3aa6bSSatish Balay } 1311cee3aa6bSSatish Balay 13124a2ae208SSatish Balay #undef __FUNCT__ 13134a2ae208SSatish Balay #define __FUNCT__ "MatMultAdd_MPIBAIJ" 1314dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPIBAIJ(Mat A,Vec xx,Vec yy,Vec zz) 1315cee3aa6bSSatish Balay { 1316cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1317dfbe8321SBarry Smith PetscErrorCode ierr; 1318d64ed03dSBarry Smith 1319d64ed03dSBarry Smith PetscFunctionBegin; 1320ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1321f830108cSBarry Smith ierr = (*a->A->ops->multadd)(a->A,xx,yy,zz);CHKERRQ(ierr); 1322ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1323f830108cSBarry Smith ierr = (*a->B->ops->multadd)(a->B,a->lvec,zz,zz);CHKERRQ(ierr); 13243a40ed3dSBarry Smith PetscFunctionReturn(0); 1325cee3aa6bSSatish Balay } 1326cee3aa6bSSatish Balay 13274a2ae208SSatish Balay #undef __FUNCT__ 13284a2ae208SSatish Balay #define __FUNCT__ "MatMultTranspose_MPIBAIJ" 1329dfbe8321SBarry Smith PetscErrorCode MatMultTranspose_MPIBAIJ(Mat A,Vec xx,Vec yy) 1330cee3aa6bSSatish Balay { 1331cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1332dfbe8321SBarry Smith PetscErrorCode ierr; 1333ace3abfcSBarry Smith PetscBool merged; 1334cee3aa6bSSatish Balay 1335d64ed03dSBarry Smith PetscFunctionBegin; 1336a5ff213dSBarry Smith ierr = VecScatterGetMerged(a->Mvctx,&merged);CHKERRQ(ierr); 1337cee3aa6bSSatish Balay /* do nondiagonal part */ 13387c922b88SBarry Smith ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr); 1339a5ff213dSBarry Smith if (!merged) { 1340cee3aa6bSSatish Balay /* send it on its way */ 1341ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 1342cee3aa6bSSatish Balay /* do local part */ 13437c922b88SBarry Smith ierr = (*a->A->ops->multtranspose)(a->A,xx,yy);CHKERRQ(ierr); 1344cee3aa6bSSatish Balay /* receive remote parts: note this assumes the values are not actually */ 1345a5ff213dSBarry Smith /* inserted in yy until the next line */ 1346ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 1347a5ff213dSBarry Smith } else { 1348a5ff213dSBarry Smith /* do local part */ 1349a5ff213dSBarry Smith ierr = (*a->A->ops->multtranspose)(a->A,xx,yy);CHKERRQ(ierr); 1350a5ff213dSBarry Smith /* send it on its way */ 1351ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 1352a5ff213dSBarry Smith /* values actually were received in the Begin() but we need to call this nop */ 1353ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 1354a5ff213dSBarry Smith } 13553a40ed3dSBarry Smith PetscFunctionReturn(0); 1356cee3aa6bSSatish Balay } 1357cee3aa6bSSatish Balay 13584a2ae208SSatish Balay #undef __FUNCT__ 13594a2ae208SSatish Balay #define __FUNCT__ "MatMultTransposeAdd_MPIBAIJ" 1360dfbe8321SBarry Smith PetscErrorCode MatMultTransposeAdd_MPIBAIJ(Mat A,Vec xx,Vec yy,Vec zz) 1361cee3aa6bSSatish Balay { 1362cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1363dfbe8321SBarry Smith PetscErrorCode ierr; 1364cee3aa6bSSatish Balay 1365d64ed03dSBarry Smith PetscFunctionBegin; 1366cee3aa6bSSatish Balay /* do nondiagonal part */ 13677c922b88SBarry Smith ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr); 1368cee3aa6bSSatish Balay /* send it on its way */ 1369ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 1370cee3aa6bSSatish Balay /* do local part */ 13717c922b88SBarry Smith ierr = (*a->A->ops->multtransposeadd)(a->A,xx,yy,zz);CHKERRQ(ierr); 1372cee3aa6bSSatish Balay /* receive remote parts: note this assumes the values are not actually */ 1373cee3aa6bSSatish Balay /* inserted in yy until the next line, which is true for my implementation*/ 1374cee3aa6bSSatish Balay /* but is not perhaps always true. */ 1375ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 13763a40ed3dSBarry Smith PetscFunctionReturn(0); 1377cee3aa6bSSatish Balay } 1378cee3aa6bSSatish Balay 1379cee3aa6bSSatish Balay /* 1380cee3aa6bSSatish Balay This only works correctly for square matrices where the subblock A->A is the 1381cee3aa6bSSatish Balay diagonal block 1382cee3aa6bSSatish Balay */ 13834a2ae208SSatish Balay #undef __FUNCT__ 13844a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonal_MPIBAIJ" 1385dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_MPIBAIJ(Mat A,Vec v) 1386cee3aa6bSSatish Balay { 1387cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1388dfbe8321SBarry Smith PetscErrorCode ierr; 1389d64ed03dSBarry Smith 1390d64ed03dSBarry Smith PetscFunctionBegin; 1391e32f2f54SBarry Smith if (A->rmap->N != A->cmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block"); 13923a40ed3dSBarry Smith ierr = MatGetDiagonal(a->A,v);CHKERRQ(ierr); 13933a40ed3dSBarry Smith PetscFunctionReturn(0); 1394cee3aa6bSSatish Balay } 1395cee3aa6bSSatish Balay 13964a2ae208SSatish Balay #undef __FUNCT__ 13974a2ae208SSatish Balay #define __FUNCT__ "MatScale_MPIBAIJ" 1398f4df32b1SMatthew Knepley PetscErrorCode MatScale_MPIBAIJ(Mat A,PetscScalar aa) 1399cee3aa6bSSatish Balay { 1400cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1401dfbe8321SBarry Smith PetscErrorCode ierr; 1402d64ed03dSBarry Smith 1403d64ed03dSBarry Smith PetscFunctionBegin; 1404f4df32b1SMatthew Knepley ierr = MatScale(a->A,aa);CHKERRQ(ierr); 1405f4df32b1SMatthew Knepley ierr = MatScale(a->B,aa);CHKERRQ(ierr); 14063a40ed3dSBarry Smith PetscFunctionReturn(0); 1407cee3aa6bSSatish Balay } 1408026e39d0SSatish Balay 14094a2ae208SSatish Balay #undef __FUNCT__ 14104a2ae208SSatish Balay #define __FUNCT__ "MatGetRow_MPIBAIJ" 1411b24ad042SBarry Smith PetscErrorCode MatGetRow_MPIBAIJ(Mat matin,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 1412acdf5bf4SSatish Balay { 1413acdf5bf4SSatish Balay Mat_MPIBAIJ *mat = (Mat_MPIBAIJ*)matin->data; 141487828ca2SBarry Smith PetscScalar *vworkA,*vworkB,**pvA,**pvB,*v_p; 14156849ba73SBarry Smith PetscErrorCode ierr; 1416d0f46423SBarry Smith PetscInt bs = matin->rmap->bs,bs2 = mat->bs2,i,*cworkA,*cworkB,**pcA,**pcB; 1417d0f46423SBarry Smith PetscInt nztot,nzA,nzB,lrow,brstart = matin->rmap->rstart,brend = matin->rmap->rend; 1418899cda47SBarry Smith PetscInt *cmap,*idx_p,cstart = mat->cstartbs; 1419acdf5bf4SSatish Balay 1420d64ed03dSBarry Smith PetscFunctionBegin; 1421e7e72b3dSBarry Smith if (row < brstart || row >= brend) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local rows"); 1422e32f2f54SBarry Smith if (mat->getrowactive) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Already active"); 1423acdf5bf4SSatish Balay mat->getrowactive = PETSC_TRUE; 1424acdf5bf4SSatish Balay 1425acdf5bf4SSatish Balay if (!mat->rowvalues && (idx || v)) { 1426acdf5bf4SSatish Balay /* 1427acdf5bf4SSatish Balay allocate enough space to hold information from the longest row. 1428acdf5bf4SSatish Balay */ 1429acdf5bf4SSatish Balay Mat_SeqBAIJ *Aa = (Mat_SeqBAIJ*)mat->A->data,*Ba = (Mat_SeqBAIJ*)mat->B->data; 1430b24ad042SBarry Smith PetscInt max = 1,mbs = mat->mbs,tmp; 1431bd16c2feSSatish Balay for (i=0; i<mbs; i++) { 1432acdf5bf4SSatish Balay tmp = Aa->i[i+1] - Aa->i[i] + Ba->i[i+1] - Ba->i[i]; 143326fbe8dcSKarl Rupp if (max < tmp) max = tmp; 1434acdf5bf4SSatish Balay } 1435dcca6d9dSJed Brown ierr = PetscMalloc2(max*bs2,&mat->rowvalues,max*bs2,&mat->rowindices);CHKERRQ(ierr); 1436acdf5bf4SSatish Balay } 1437d9d09a02SSatish Balay lrow = row - brstart; 1438acdf5bf4SSatish Balay 1439acdf5bf4SSatish Balay pvA = &vworkA; pcA = &cworkA; pvB = &vworkB; pcB = &cworkB; 1440acdf5bf4SSatish Balay if (!v) {pvA = 0; pvB = 0;} 1441acdf5bf4SSatish Balay if (!idx) {pcA = 0; if (!v) pcB = 0;} 1442f830108cSBarry Smith ierr = (*mat->A->ops->getrow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr); 1443f830108cSBarry Smith ierr = (*mat->B->ops->getrow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr); 1444acdf5bf4SSatish Balay nztot = nzA + nzB; 1445acdf5bf4SSatish Balay 1446acdf5bf4SSatish Balay cmap = mat->garray; 1447acdf5bf4SSatish Balay if (v || idx) { 1448acdf5bf4SSatish Balay if (nztot) { 1449acdf5bf4SSatish Balay /* Sort by increasing column numbers, assuming A and B already sorted */ 1450b24ad042SBarry Smith PetscInt imark = -1; 1451acdf5bf4SSatish Balay if (v) { 1452acdf5bf4SSatish Balay *v = v_p = mat->rowvalues; 1453acdf5bf4SSatish Balay for (i=0; i<nzB; i++) { 1454d9d09a02SSatish Balay if (cmap[cworkB[i]/bs] < cstart) v_p[i] = vworkB[i]; 1455acdf5bf4SSatish Balay else break; 1456acdf5bf4SSatish Balay } 1457acdf5bf4SSatish Balay imark = i; 1458acdf5bf4SSatish Balay for (i=0; i<nzA; i++) v_p[imark+i] = vworkA[i]; 1459acdf5bf4SSatish Balay for (i=imark; i<nzB; i++) v_p[nzA+i] = vworkB[i]; 1460acdf5bf4SSatish Balay } 1461acdf5bf4SSatish Balay if (idx) { 1462acdf5bf4SSatish Balay *idx = idx_p = mat->rowindices; 1463acdf5bf4SSatish Balay if (imark > -1) { 1464acdf5bf4SSatish Balay for (i=0; i<imark; i++) { 1465bd16c2feSSatish Balay idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs; 1466acdf5bf4SSatish Balay } 1467acdf5bf4SSatish Balay } else { 1468acdf5bf4SSatish Balay for (i=0; i<nzB; i++) { 146926fbe8dcSKarl Rupp if (cmap[cworkB[i]/bs] < cstart) idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs; 1470acdf5bf4SSatish Balay else break; 1471acdf5bf4SSatish Balay } 1472acdf5bf4SSatish Balay imark = i; 1473acdf5bf4SSatish Balay } 1474d9d09a02SSatish Balay for (i=0; i<nzA; i++) idx_p[imark+i] = cstart*bs + cworkA[i]; 1475d9d09a02SSatish Balay for (i=imark; i<nzB; i++) idx_p[nzA+i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ; 1476acdf5bf4SSatish Balay } 1477d64ed03dSBarry Smith } else { 1478d212a18eSSatish Balay if (idx) *idx = 0; 1479d212a18eSSatish Balay if (v) *v = 0; 1480d212a18eSSatish Balay } 1481acdf5bf4SSatish Balay } 1482acdf5bf4SSatish Balay *nz = nztot; 1483f830108cSBarry Smith ierr = (*mat->A->ops->restorerow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr); 1484f830108cSBarry Smith ierr = (*mat->B->ops->restorerow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr); 14853a40ed3dSBarry Smith PetscFunctionReturn(0); 1486acdf5bf4SSatish Balay } 1487acdf5bf4SSatish Balay 14884a2ae208SSatish Balay #undef __FUNCT__ 14894a2ae208SSatish Balay #define __FUNCT__ "MatRestoreRow_MPIBAIJ" 1490b24ad042SBarry Smith PetscErrorCode MatRestoreRow_MPIBAIJ(Mat mat,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 1491acdf5bf4SSatish Balay { 1492acdf5bf4SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 1493d64ed03dSBarry Smith 1494d64ed03dSBarry Smith PetscFunctionBegin; 1495e7e72b3dSBarry Smith if (!baij->getrowactive) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"MatGetRow not called"); 1496acdf5bf4SSatish Balay baij->getrowactive = PETSC_FALSE; 14973a40ed3dSBarry Smith PetscFunctionReturn(0); 1498acdf5bf4SSatish Balay } 1499acdf5bf4SSatish Balay 15004a2ae208SSatish Balay #undef __FUNCT__ 15014a2ae208SSatish Balay #define __FUNCT__ "MatZeroEntries_MPIBAIJ" 1502dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_MPIBAIJ(Mat A) 150358667388SSatish Balay { 150458667388SSatish Balay Mat_MPIBAIJ *l = (Mat_MPIBAIJ*)A->data; 1505dfbe8321SBarry Smith PetscErrorCode ierr; 1506d64ed03dSBarry Smith 1507d64ed03dSBarry Smith PetscFunctionBegin; 150858667388SSatish Balay ierr = MatZeroEntries(l->A);CHKERRQ(ierr); 150958667388SSatish Balay ierr = MatZeroEntries(l->B);CHKERRQ(ierr); 15103a40ed3dSBarry Smith PetscFunctionReturn(0); 151158667388SSatish Balay } 15120ac07820SSatish Balay 15134a2ae208SSatish Balay #undef __FUNCT__ 15144a2ae208SSatish Balay #define __FUNCT__ "MatGetInfo_MPIBAIJ" 1515dfbe8321SBarry Smith PetscErrorCode MatGetInfo_MPIBAIJ(Mat matin,MatInfoType flag,MatInfo *info) 15160ac07820SSatish Balay { 15174e220ebcSLois Curfman McInnes Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)matin->data; 15184e220ebcSLois Curfman McInnes Mat A = a->A,B = a->B; 1519dfbe8321SBarry Smith PetscErrorCode ierr; 1520329f5518SBarry Smith PetscReal isend[5],irecv[5]; 15210ac07820SSatish Balay 1522d64ed03dSBarry Smith PetscFunctionBegin; 1523d0f46423SBarry Smith info->block_size = (PetscReal)matin->rmap->bs; 152426fbe8dcSKarl Rupp 15254e220ebcSLois Curfman McInnes ierr = MatGetInfo(A,MAT_LOCAL,info);CHKERRQ(ierr); 152626fbe8dcSKarl Rupp 15270e4b21beSBarry Smith isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded; 1528de87f314SBarry Smith isend[3] = info->memory; isend[4] = info->mallocs; 152926fbe8dcSKarl Rupp 15304e220ebcSLois Curfman McInnes ierr = MatGetInfo(B,MAT_LOCAL,info);CHKERRQ(ierr); 153126fbe8dcSKarl Rupp 15320e4b21beSBarry Smith isend[0] += info->nz_used; isend[1] += info->nz_allocated; isend[2] += info->nz_unneeded; 1533de87f314SBarry Smith isend[3] += info->memory; isend[4] += info->mallocs; 153426fbe8dcSKarl Rupp 15350ac07820SSatish Balay if (flag == MAT_LOCAL) { 15364e220ebcSLois Curfman McInnes info->nz_used = isend[0]; 15374e220ebcSLois Curfman McInnes info->nz_allocated = isend[1]; 15384e220ebcSLois Curfman McInnes info->nz_unneeded = isend[2]; 15394e220ebcSLois Curfman McInnes info->memory = isend[3]; 15404e220ebcSLois Curfman McInnes info->mallocs = isend[4]; 15410ac07820SSatish Balay } else if (flag == MAT_GLOBAL_MAX) { 1542ce94432eSBarry Smith ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPIU_MAX,PetscObjectComm((PetscObject)matin));CHKERRQ(ierr); 154326fbe8dcSKarl Rupp 15444e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 15454e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 15464e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 15474e220ebcSLois Curfman McInnes info->memory = irecv[3]; 15484e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 15490ac07820SSatish Balay } else if (flag == MAT_GLOBAL_SUM) { 1550ce94432eSBarry Smith ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)matin));CHKERRQ(ierr); 155126fbe8dcSKarl Rupp 15524e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 15534e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 15544e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 15554e220ebcSLois Curfman McInnes info->memory = irecv[3]; 15564e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 1557ce94432eSBarry Smith } else SETERRQ1(PetscObjectComm((PetscObject)matin),PETSC_ERR_ARG_WRONG,"Unknown MatInfoType argument %d",(int)flag); 15584e220ebcSLois Curfman McInnes info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */ 15594e220ebcSLois Curfman McInnes info->fill_ratio_needed = 0; 15604e220ebcSLois Curfman McInnes info->factor_mallocs = 0; 15613a40ed3dSBarry Smith PetscFunctionReturn(0); 15620ac07820SSatish Balay } 15630ac07820SSatish Balay 15644a2ae208SSatish Balay #undef __FUNCT__ 15654a2ae208SSatish Balay #define __FUNCT__ "MatSetOption_MPIBAIJ" 1566ace3abfcSBarry Smith PetscErrorCode MatSetOption_MPIBAIJ(Mat A,MatOption op,PetscBool flg) 156758667388SSatish Balay { 156858667388SSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1569dfbe8321SBarry Smith PetscErrorCode ierr; 157058667388SSatish Balay 1571d64ed03dSBarry Smith PetscFunctionBegin; 157212c028f9SKris Buschelman switch (op) { 1573512a5fc5SBarry Smith case MAT_NEW_NONZERO_LOCATIONS: 157412c028f9SKris Buschelman case MAT_NEW_NONZERO_ALLOCATION_ERR: 157528b2fa4aSMatthew Knepley case MAT_UNUSED_NONZERO_LOCATION_ERR: 1576a9817697SBarry Smith case MAT_KEEP_NONZERO_PATTERN: 157712c028f9SKris Buschelman case MAT_NEW_NONZERO_LOCATION_ERR: 15784e0d8c25SBarry Smith ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 15794e0d8c25SBarry Smith ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr); 158012c028f9SKris Buschelman break; 158112c028f9SKris Buschelman case MAT_ROW_ORIENTED: 15824e0d8c25SBarry Smith a->roworiented = flg; 158326fbe8dcSKarl Rupp 15844e0d8c25SBarry Smith ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 15854e0d8c25SBarry Smith ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr); 158612c028f9SKris Buschelman break; 15874e0d8c25SBarry Smith case MAT_NEW_DIAGONALS: 1588290bbb0aSBarry Smith ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr); 158912c028f9SKris Buschelman break; 159012c028f9SKris Buschelman case MAT_IGNORE_OFF_PROC_ENTRIES: 15914e0d8c25SBarry Smith a->donotstash = flg; 159212c028f9SKris Buschelman break; 159312c028f9SKris Buschelman case MAT_USE_HASH_TABLE: 15944e0d8c25SBarry Smith a->ht_flag = flg; 159512c028f9SKris Buschelman break; 159677e54ba9SKris Buschelman case MAT_SYMMETRIC: 159777e54ba9SKris Buschelman case MAT_STRUCTURALLY_SYMMETRIC: 15982188ac68SBarry Smith case MAT_HERMITIAN: 15992188ac68SBarry Smith case MAT_SYMMETRY_ETERNAL: 16004e0d8c25SBarry Smith ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 160177e54ba9SKris Buschelman break; 160212c028f9SKris Buschelman default: 1603ce94432eSBarry Smith SETERRQ1(PetscObjectComm((PetscObject)A),PETSC_ERR_SUP,"unknown option %d",op); 1604d64ed03dSBarry Smith } 16053a40ed3dSBarry Smith PetscFunctionReturn(0); 160658667388SSatish Balay } 160758667388SSatish Balay 16084a2ae208SSatish Balay #undef __FUNCT__ 16096a719282SBarry Smith #define __FUNCT__ "MatTranspose_MPIBAIJ" 1610fc4dec0aSBarry Smith PetscErrorCode MatTranspose_MPIBAIJ(Mat A,MatReuse reuse,Mat *matout) 16110ac07820SSatish Balay { 16120ac07820SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)A->data; 16130ac07820SSatish Balay Mat_SeqBAIJ *Aloc; 16140ac07820SSatish Balay Mat B; 1615dfbe8321SBarry Smith PetscErrorCode ierr; 1616d0f46423SBarry Smith PetscInt M =A->rmap->N,N=A->cmap->N,*ai,*aj,i,*rvals,j,k,col; 1617d0f46423SBarry Smith PetscInt bs=A->rmap->bs,mbs=baij->mbs; 16183eda8832SBarry Smith MatScalar *a; 16190ac07820SSatish Balay 1620d64ed03dSBarry Smith PetscFunctionBegin; 1621ce94432eSBarry Smith if (reuse == MAT_REUSE_MATRIX && A == *matout && M != N) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ARG_SIZ,"Square matrix only for in-place"); 1622fc4dec0aSBarry Smith if (reuse == MAT_INITIAL_MATRIX || *matout == A) { 1623ce94432eSBarry Smith ierr = MatCreate(PetscObjectComm((PetscObject)A),&B);CHKERRQ(ierr); 1624d0f46423SBarry Smith ierr = MatSetSizes(B,A->cmap->n,A->rmap->n,N,M);CHKERRQ(ierr); 16257adad957SLisandro Dalcin ierr = MatSetType(B,((PetscObject)A)->type_name);CHKERRQ(ierr); 16262e72b8d9SBarry Smith /* Do not know preallocation information, but must set block size */ 16270298fd71SBarry Smith ierr = MatMPIBAIJSetPreallocation(B,A->rmap->bs,PETSC_DECIDE,NULL,PETSC_DECIDE,NULL);CHKERRQ(ierr); 1628fc4dec0aSBarry Smith } else { 1629fc4dec0aSBarry Smith B = *matout; 1630fc4dec0aSBarry Smith } 16310ac07820SSatish Balay 16320ac07820SSatish Balay /* copy over the A part */ 16330ac07820SSatish Balay Aloc = (Mat_SeqBAIJ*)baij->A->data; 16340ac07820SSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 1635785e854fSJed Brown ierr = PetscMalloc1(bs,&rvals);CHKERRQ(ierr); 16360ac07820SSatish Balay 16370ac07820SSatish Balay for (i=0; i<mbs; i++) { 1638899cda47SBarry Smith rvals[0] = bs*(baij->rstartbs + i); 163926fbe8dcSKarl Rupp for (j=1; j<bs; j++) rvals[j] = rvals[j-1] + 1; 16400ac07820SSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 1641899cda47SBarry Smith col = (baij->cstartbs+aj[j])*bs; 16420ac07820SSatish Balay for (k=0; k<bs; k++) { 164397e5c40aSBarry Smith ierr = MatSetValues_MPIBAIJ(B,1,&col,bs,rvals,a,INSERT_VALUES);CHKERRQ(ierr); 164426fbe8dcSKarl Rupp 16450ac07820SSatish Balay col++; a += bs; 16460ac07820SSatish Balay } 16470ac07820SSatish Balay } 16480ac07820SSatish Balay } 16490ac07820SSatish Balay /* copy over the B part */ 16500ac07820SSatish Balay Aloc = (Mat_SeqBAIJ*)baij->B->data; 16510ac07820SSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 16520ac07820SSatish Balay for (i=0; i<mbs; i++) { 1653899cda47SBarry Smith rvals[0] = bs*(baij->rstartbs + i); 165426fbe8dcSKarl Rupp for (j=1; j<bs; j++) rvals[j] = rvals[j-1] + 1; 16550ac07820SSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 16560ac07820SSatish Balay col = baij->garray[aj[j]]*bs; 16570ac07820SSatish Balay for (k=0; k<bs; k++) { 165897e5c40aSBarry Smith ierr = MatSetValues_MPIBAIJ(B,1,&col,bs,rvals,a,INSERT_VALUES);CHKERRQ(ierr); 165926fbe8dcSKarl Rupp col++; 166026fbe8dcSKarl Rupp a += bs; 16610ac07820SSatish Balay } 16620ac07820SSatish Balay } 16630ac07820SSatish Balay } 1664606d414cSSatish Balay ierr = PetscFree(rvals);CHKERRQ(ierr); 16650ac07820SSatish Balay ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 16660ac07820SSatish Balay ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 16670ac07820SSatish Balay 166826fbe8dcSKarl Rupp if (reuse == MAT_INITIAL_MATRIX || *matout != A) *matout = B; 166926fbe8dcSKarl Rupp else { 1670eb6b5d47SBarry Smith ierr = MatHeaderMerge(A,B);CHKERRQ(ierr); 16710ac07820SSatish Balay } 16723a40ed3dSBarry Smith PetscFunctionReturn(0); 16730ac07820SSatish Balay } 16740e95ebc0SSatish Balay 16754a2ae208SSatish Balay #undef __FUNCT__ 16764a2ae208SSatish Balay #define __FUNCT__ "MatDiagonalScale_MPIBAIJ" 1677dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_MPIBAIJ(Mat mat,Vec ll,Vec rr) 16780e95ebc0SSatish Balay { 167936c4a09eSSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 168036c4a09eSSatish Balay Mat a = baij->A,b = baij->B; 1681dfbe8321SBarry Smith PetscErrorCode ierr; 1682b24ad042SBarry Smith PetscInt s1,s2,s3; 16830e95ebc0SSatish Balay 1684d64ed03dSBarry Smith PetscFunctionBegin; 168536c4a09eSSatish Balay ierr = MatGetLocalSize(mat,&s2,&s3);CHKERRQ(ierr); 168636c4a09eSSatish Balay if (rr) { 168736c4a09eSSatish Balay ierr = VecGetLocalSize(rr,&s1);CHKERRQ(ierr); 1688e32f2f54SBarry Smith if (s1!=s3) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"right vector non-conforming local size"); 168936c4a09eSSatish Balay /* Overlap communication with computation. */ 1690ca9f406cSSatish Balay ierr = VecScatterBegin(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 169136c4a09eSSatish Balay } 16920e95ebc0SSatish Balay if (ll) { 16930e95ebc0SSatish Balay ierr = VecGetLocalSize(ll,&s1);CHKERRQ(ierr); 1694e32f2f54SBarry Smith if (s1!=s2) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"left vector non-conforming local size"); 16950298fd71SBarry Smith ierr = (*b->ops->diagonalscale)(b,ll,NULL);CHKERRQ(ierr); 16960e95ebc0SSatish Balay } 169736c4a09eSSatish Balay /* scale the diagonal block */ 169836c4a09eSSatish Balay ierr = (*a->ops->diagonalscale)(a,ll,rr);CHKERRQ(ierr); 169936c4a09eSSatish Balay 170036c4a09eSSatish Balay if (rr) { 170136c4a09eSSatish Balay /* Do a scatter end and then right scale the off-diagonal block */ 1702ca9f406cSSatish Balay ierr = VecScatterEnd(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 17030298fd71SBarry Smith ierr = (*b->ops->diagonalscale)(b,NULL,baij->lvec);CHKERRQ(ierr); 170436c4a09eSSatish Balay } 17053a40ed3dSBarry Smith PetscFunctionReturn(0); 17060e95ebc0SSatish Balay } 17070e95ebc0SSatish Balay 17084a2ae208SSatish Balay #undef __FUNCT__ 17094a2ae208SSatish Balay #define __FUNCT__ "MatZeroRows_MPIBAIJ" 17102b40b63fSBarry Smith PetscErrorCode MatZeroRows_MPIBAIJ(Mat A,PetscInt N,const PetscInt rows[],PetscScalar diag,Vec x,Vec b) 17110ac07820SSatish Balay { 17120ac07820SSatish Balay Mat_MPIBAIJ *l = (Mat_MPIBAIJ *) A->data; 171365a92638SMatthew G. Knepley PetscInt *owners = A->rmap->range; 171465a92638SMatthew G. Knepley PetscInt n = A->rmap->n; 171565a92638SMatthew G. Knepley PetscSF sf; 171665a92638SMatthew G. Knepley PetscInt *lrows; 171765a92638SMatthew G. Knepley PetscSFNode *rrows; 171869ea2d38SJed Brown PetscInt r, p = 0, len = 0; 17196849ba73SBarry Smith PetscErrorCode ierr; 17200ac07820SSatish Balay 1721d64ed03dSBarry Smith PetscFunctionBegin; 172265a92638SMatthew G. Knepley /* Create SF where leaves are input rows and roots are owned rows */ 1723785e854fSJed Brown ierr = PetscMalloc1(n, &lrows);CHKERRQ(ierr); 172465a92638SMatthew G. Knepley for (r = 0; r < n; ++r) lrows[r] = -1; 1725a34163a4SJed Brown if (!A->nooffproczerorows) {ierr = PetscMalloc1(N, &rrows);CHKERRQ(ierr);} 172665a92638SMatthew G. Knepley for (r = 0; r < N; ++r) { 172765a92638SMatthew G. Knepley const PetscInt idx = rows[r]; 172869ea2d38SJed Brown if (idx < 0 || A->rmap->N <= idx) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row %D out of range [0,%D)",idx,A->rmap->N); 172969ea2d38SJed Brown if (idx < owners[p] || owners[p+1] <= idx) { /* short-circuit the search if the last p owns this row too */ 173069ea2d38SJed Brown ierr = PetscLayoutFindOwner(A->rmap,idx,&p);CHKERRQ(ierr); 173169ea2d38SJed Brown } 1732a34163a4SJed Brown if (A->nooffproczerorows) { 1733a34163a4SJed Brown if (p != l->rank) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"MAT_NO_OFF_PROC_ZERO_ROWS set, but row %D is not owned by rank %d",idx,l->rank); 1734a34163a4SJed Brown lrows[len++] = idx - owners[p]; 1735a34163a4SJed Brown } else { 173665a92638SMatthew G. Knepley rrows[r].rank = p; 173765a92638SMatthew G. Knepley rrows[r].index = rows[r] - owners[p]; 17380ac07820SSatish Balay } 1739a34163a4SJed Brown } 1740a34163a4SJed Brown if (!A->nooffproczerorows) { 174165a92638SMatthew G. Knepley ierr = PetscSFCreate(PetscObjectComm((PetscObject) A), &sf);CHKERRQ(ierr); 174265a92638SMatthew G. Knepley ierr = PetscSFSetGraph(sf, n, N, NULL, PETSC_OWN_POINTER, rrows, PETSC_OWN_POINTER);CHKERRQ(ierr); 174365a92638SMatthew G. Knepley /* Collect flags for rows to be zeroed */ 174465a92638SMatthew G. Knepley ierr = PetscSFReduceBegin(sf, MPIU_INT, (PetscInt *) rows, lrows, MPI_LOR);CHKERRQ(ierr); 174565a92638SMatthew G. Knepley ierr = PetscSFReduceEnd(sf, MPIU_INT, (PetscInt *) rows, lrows, MPI_LOR);CHKERRQ(ierr); 174665a92638SMatthew G. Knepley ierr = PetscSFDestroy(&sf);CHKERRQ(ierr); 174765a92638SMatthew G. Knepley /* Compress and put in row numbers */ 174865a92638SMatthew G. Knepley for (r = 0; r < n; ++r) if (lrows[r] >= 0) lrows[len++] = r; 1749a34163a4SJed Brown } 175097b48c8fSBarry Smith /* fix right hand side if needed */ 175197b48c8fSBarry Smith if (x && b) { 175265a92638SMatthew G. Knepley const PetscScalar *xx; 175365a92638SMatthew G. Knepley PetscScalar *bb; 175465a92638SMatthew G. Knepley 175597b48c8fSBarry Smith ierr = VecGetArrayRead(x,&xx);CHKERRQ(ierr); 175697b48c8fSBarry Smith ierr = VecGetArray(b,&bb);CHKERRQ(ierr); 175765a92638SMatthew G. Knepley for (r = 0; r < len; ++r) bb[lrows[r]] = diag*xx[lrows[r]]; 175897b48c8fSBarry Smith ierr = VecRestoreArrayRead(x,&xx);CHKERRQ(ierr); 175997b48c8fSBarry Smith ierr = VecRestoreArray(b,&bb);CHKERRQ(ierr); 176097b48c8fSBarry Smith } 176197b48c8fSBarry Smith 17620ac07820SSatish Balay /* actually zap the local rows */ 176372dacd9aSBarry Smith /* 176472dacd9aSBarry Smith Zero the required rows. If the "diagonal block" of the matrix 1765a8c7a070SBarry Smith is square and the user wishes to set the diagonal we use separate 176672dacd9aSBarry Smith code so that MatSetValues() is not called for each diagonal allocating 176772dacd9aSBarry Smith new memory, thus calling lots of mallocs and slowing things down. 176872dacd9aSBarry Smith 176972dacd9aSBarry Smith */ 17709c957beeSSatish Balay /* must zero l->B before l->A because the (diag) case below may put values into l->B*/ 1771a34163a4SJed Brown ierr = MatZeroRows_SeqBAIJ(l->B,len,lrows,0.0,NULL,NULL);CHKERRQ(ierr); 1772d0f46423SBarry Smith if ((diag != 0.0) && (l->A->rmap->N == l->A->cmap->N)) { 1773a34163a4SJed Brown ierr = MatZeroRows_SeqBAIJ(l->A,len,lrows,diag,NULL,NULL);CHKERRQ(ierr); 1774f4df32b1SMatthew Knepley } else if (diag != 0.0) { 177565a92638SMatthew G. Knepley ierr = MatZeroRows_SeqBAIJ(l->A,len,lrows,0.0,0,0);CHKERRQ(ierr); 1776e7e72b3dSBarry Smith if (((Mat_SeqBAIJ*)l->A->data)->nonew) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"MatZeroRows() on rectangular matrices cannot be used with the Mat options \n\ 1777512a5fc5SBarry Smith MAT_NEW_NONZERO_LOCATIONS,MAT_NEW_NONZERO_LOCATION_ERR,MAT_NEW_NONZERO_ALLOCATION_ERR"); 177865a92638SMatthew G. Knepley for (r = 0; r < len; ++r) { 177965a92638SMatthew G. Knepley const PetscInt row = lrows[r] + A->rmap->rstart; 1780f4df32b1SMatthew Knepley ierr = MatSetValues(A,1,&row,1,&row,&diag,INSERT_VALUES);CHKERRQ(ierr); 1781a07cd24cSSatish Balay } 1782a07cd24cSSatish Balay ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 1783a07cd24cSSatish Balay ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 17849c957beeSSatish Balay } else { 1785a34163a4SJed Brown ierr = MatZeroRows_SeqBAIJ(l->A,len,lrows,0.0,NULL,NULL);CHKERRQ(ierr); 1786a07cd24cSSatish Balay } 1787606d414cSSatish Balay ierr = PetscFree(lrows);CHKERRQ(ierr); 17884f9cfa9eSBarry Smith 17894f9cfa9eSBarry Smith /* only change matrix nonzero state if pattern was allowed to be changed */ 17904f9cfa9eSBarry Smith if (!((Mat_SeqBAIJ*)(l->A->data))->keepnonzeropattern) { 1791e56f5c9eSBarry Smith PetscObjectState state = l->A->nonzerostate + l->B->nonzerostate; 179209e82e2bSBarry Smith ierr = MPI_Allreduce(&state,&A->nonzerostate,1,MPIU_INT64,MPI_SUM,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 1793e56f5c9eSBarry Smith } 17943a40ed3dSBarry Smith PetscFunctionReturn(0); 17950ac07820SSatish Balay } 179672dacd9aSBarry Smith 17974a2ae208SSatish Balay #undef __FUNCT__ 17986f0a72daSMatthew G. Knepley #define __FUNCT__ "MatZeroRowsColumns_MPIBAIJ" 17996f0a72daSMatthew G. Knepley PetscErrorCode MatZeroRowsColumns_MPIBAIJ(Mat A,PetscInt N,const PetscInt rows[],PetscScalar diag,Vec x,Vec b) 18006f0a72daSMatthew G. Knepley { 18016f0a72daSMatthew G. Knepley Mat_MPIBAIJ *l = (Mat_MPIBAIJ*)A->data; 18026f0a72daSMatthew G. Knepley PetscErrorCode ierr; 18035ba17502SJed Brown PetscMPIInt n = A->rmap->n; 1804fbb64d0eSMatthew G. Knepley PetscInt i,j,k,r,p = 0,len = 0,row,col,count; 18056f0a72daSMatthew G. Knepley PetscInt *lrows,*owners = A->rmap->range; 18066f0a72daSMatthew G. Knepley PetscSFNode *rrows; 18076f0a72daSMatthew G. Knepley PetscSF sf; 18086f0a72daSMatthew G. Knepley const PetscScalar *xx; 18096f0a72daSMatthew G. Knepley PetscScalar *bb,*mask; 18106f0a72daSMatthew G. Knepley Vec xmask,lmask; 18116f0a72daSMatthew G. Knepley Mat_SeqBAIJ *baij = (Mat_SeqBAIJ*)l->B->data; 18126f0a72daSMatthew G. Knepley PetscInt bs = A->rmap->bs, bs2 = baij->bs2; 18136f0a72daSMatthew G. Knepley PetscScalar *aa; 18146f0a72daSMatthew G. Knepley 18156f0a72daSMatthew G. Knepley PetscFunctionBegin; 18166f0a72daSMatthew G. Knepley /* Create SF where leaves are input rows and roots are owned rows */ 18176f0a72daSMatthew G. Knepley ierr = PetscMalloc1(n, &lrows);CHKERRQ(ierr); 18186f0a72daSMatthew G. Knepley for (r = 0; r < n; ++r) lrows[r] = -1; 18196f0a72daSMatthew G. Knepley ierr = PetscMalloc1(N, &rrows);CHKERRQ(ierr); 18206f0a72daSMatthew G. Knepley for (r = 0; r < N; ++r) { 18216f0a72daSMatthew G. Knepley const PetscInt idx = rows[r]; 18225ba17502SJed Brown if (idx < 0 || A->rmap->N <= idx) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row %D out of range [0,%D)",idx,A->rmap->N); 18235ba17502SJed Brown if (idx < owners[p] || owners[p+1] <= idx) { /* short-circuit the search if the last p owns this row too */ 18245ba17502SJed Brown ierr = PetscLayoutFindOwner(A->rmap,idx,&p);CHKERRQ(ierr); 18255ba17502SJed Brown } 18266f0a72daSMatthew G. Knepley rrows[r].rank = p; 18276f0a72daSMatthew G. Knepley rrows[r].index = rows[r] - owners[p]; 18286f0a72daSMatthew G. Knepley } 18296f0a72daSMatthew G. Knepley ierr = PetscSFCreate(PetscObjectComm((PetscObject) A), &sf);CHKERRQ(ierr); 18306f0a72daSMatthew G. Knepley ierr = PetscSFSetGraph(sf, n, N, NULL, PETSC_OWN_POINTER, rrows, PETSC_OWN_POINTER);CHKERRQ(ierr); 18316f0a72daSMatthew G. Knepley /* Collect flags for rows to be zeroed */ 18326f0a72daSMatthew G. Knepley ierr = PetscSFReduceBegin(sf, MPIU_INT, (PetscInt *) rows, lrows, MPI_LOR);CHKERRQ(ierr); 18336f0a72daSMatthew G. Knepley ierr = PetscSFReduceEnd(sf, MPIU_INT, (PetscInt *) rows, lrows, MPI_LOR);CHKERRQ(ierr); 18346f0a72daSMatthew G. Knepley ierr = PetscSFDestroy(&sf);CHKERRQ(ierr); 18356f0a72daSMatthew G. Knepley /* Compress and put in row numbers */ 18366f0a72daSMatthew G. Knepley for (r = 0; r < n; ++r) if (lrows[r] >= 0) lrows[len++] = r; 18376f0a72daSMatthew G. Knepley /* zero diagonal part of matrix */ 18386f0a72daSMatthew G. Knepley ierr = MatZeroRowsColumns(l->A,len,lrows,diag,x,b);CHKERRQ(ierr); 18396f0a72daSMatthew G. Knepley /* handle off diagonal part of matrix */ 18406f0a72daSMatthew G. Knepley ierr = MatGetVecs(A,&xmask,NULL);CHKERRQ(ierr); 18416f0a72daSMatthew G. Knepley ierr = VecDuplicate(l->lvec,&lmask);CHKERRQ(ierr); 18426f0a72daSMatthew G. Knepley ierr = VecGetArray(xmask,&bb);CHKERRQ(ierr); 18436f0a72daSMatthew G. Knepley for (i=0; i<len; i++) bb[lrows[i]] = 1; 18446f0a72daSMatthew G. Knepley ierr = VecRestoreArray(xmask,&bb);CHKERRQ(ierr); 18456f0a72daSMatthew G. Knepley ierr = VecScatterBegin(l->Mvctx,xmask,lmask,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 18466f0a72daSMatthew G. Knepley ierr = VecScatterEnd(l->Mvctx,xmask,lmask,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 18476f0a72daSMatthew G. Knepley ierr = VecDestroy(&xmask);CHKERRQ(ierr); 18486f0a72daSMatthew G. Knepley if (x) { 18496f0a72daSMatthew G. Knepley ierr = VecScatterBegin(l->Mvctx,x,l->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 18506f0a72daSMatthew G. Knepley ierr = VecScatterEnd(l->Mvctx,x,l->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 18516f0a72daSMatthew G. Knepley ierr = VecGetArrayRead(l->lvec,&xx);CHKERRQ(ierr); 18526f0a72daSMatthew G. Knepley ierr = VecGetArray(b,&bb);CHKERRQ(ierr); 18536f0a72daSMatthew G. Knepley } 18546f0a72daSMatthew G. Knepley ierr = VecGetArray(lmask,&mask);CHKERRQ(ierr); 18556f0a72daSMatthew G. Knepley /* remove zeroed rows of off diagonal matrix */ 18566f0a72daSMatthew G. Knepley for (i = 0; i < len; ++i) { 18576f0a72daSMatthew G. Knepley row = lrows[i]; 18586f0a72daSMatthew G. Knepley count = (baij->i[row/bs +1] - baij->i[row/bs])*bs; 18596f0a72daSMatthew G. Knepley aa = ((MatScalar*)(baij->a)) + baij->i[row/bs]*bs2 + (row%bs); 18606f0a72daSMatthew G. Knepley for (k = 0; k < count; ++k) { 18616f0a72daSMatthew G. Knepley aa[0] = 0.0; 18626f0a72daSMatthew G. Knepley aa += bs; 18636f0a72daSMatthew G. Knepley } 18646f0a72daSMatthew G. Knepley } 18656f0a72daSMatthew G. Knepley /* loop over all elements of off process part of matrix zeroing removed columns*/ 18666f0a72daSMatthew G. Knepley for (i = 0; i < l->B->rmap->N; ++i) { 18676f0a72daSMatthew G. Knepley row = i/bs; 18686f0a72daSMatthew G. Knepley for (j = baij->i[row]; j < baij->i[row+1]; ++j) { 18696f0a72daSMatthew G. Knepley for (k = 0; k < bs; ++k) { 18706f0a72daSMatthew G. Knepley col = bs*baij->j[j] + k; 18716f0a72daSMatthew G. Knepley if (PetscAbsScalar(mask[col])) { 18726f0a72daSMatthew G. Knepley aa = ((MatScalar*)(baij->a)) + j*bs2 + (i%bs) + bs*k; 18736f0a72daSMatthew G. Knepley if (b) bb[i] -= aa[0]*xx[col]; 18746f0a72daSMatthew G. Knepley aa[0] = 0.0; 18756f0a72daSMatthew G. Knepley } 18766f0a72daSMatthew G. Knepley } 18776f0a72daSMatthew G. Knepley } 18786f0a72daSMatthew G. Knepley } 18796f0a72daSMatthew G. Knepley if (x) { 18806f0a72daSMatthew G. Knepley ierr = VecRestoreArray(b,&bb);CHKERRQ(ierr); 18816f0a72daSMatthew G. Knepley ierr = VecRestoreArrayRead(l->lvec,&xx);CHKERRQ(ierr); 18826f0a72daSMatthew G. Knepley } 18836f0a72daSMatthew G. Knepley ierr = VecRestoreArray(lmask,&mask);CHKERRQ(ierr); 18846f0a72daSMatthew G. Knepley ierr = VecDestroy(&lmask);CHKERRQ(ierr); 18856f0a72daSMatthew G. Knepley ierr = PetscFree(lrows);CHKERRQ(ierr); 18864f9cfa9eSBarry Smith 18874f9cfa9eSBarry Smith /* only change matrix nonzero state if pattern was allowed to be changed */ 18884f9cfa9eSBarry Smith if (!((Mat_SeqBAIJ*)(l->A->data))->keepnonzeropattern) { 18894f9cfa9eSBarry Smith PetscObjectState state = l->A->nonzerostate + l->B->nonzerostate; 18904f9cfa9eSBarry Smith ierr = MPI_Allreduce(&state,&A->nonzerostate,1,MPIU_INT64,MPI_SUM,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 18914f9cfa9eSBarry Smith } 18926f0a72daSMatthew G. Knepley PetscFunctionReturn(0); 18936f0a72daSMatthew G. Knepley } 18946f0a72daSMatthew G. Knepley 18956f0a72daSMatthew G. Knepley #undef __FUNCT__ 18964a2ae208SSatish Balay #define __FUNCT__ "MatSetUnfactored_MPIBAIJ" 1897dfbe8321SBarry Smith PetscErrorCode MatSetUnfactored_MPIBAIJ(Mat A) 1898bb5a7306SBarry Smith { 1899bb5a7306SBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1900dfbe8321SBarry Smith PetscErrorCode ierr; 1901d64ed03dSBarry Smith 1902d64ed03dSBarry Smith PetscFunctionBegin; 1903bb5a7306SBarry Smith ierr = MatSetUnfactored(a->A);CHKERRQ(ierr); 19043a40ed3dSBarry Smith PetscFunctionReturn(0); 1905bb5a7306SBarry Smith } 1906bb5a7306SBarry Smith 19076849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIBAIJ(Mat,MatDuplicateOption,Mat*); 19080ac07820SSatish Balay 19094a2ae208SSatish Balay #undef __FUNCT__ 19104a2ae208SSatish Balay #define __FUNCT__ "MatEqual_MPIBAIJ" 1911ace3abfcSBarry Smith PetscErrorCode MatEqual_MPIBAIJ(Mat A,Mat B,PetscBool *flag) 19127fc3c18eSBarry Smith { 19137fc3c18eSBarry Smith Mat_MPIBAIJ *matB = (Mat_MPIBAIJ*)B->data,*matA = (Mat_MPIBAIJ*)A->data; 19147fc3c18eSBarry Smith Mat a,b,c,d; 1915ace3abfcSBarry Smith PetscBool flg; 1916dfbe8321SBarry Smith PetscErrorCode ierr; 19177fc3c18eSBarry Smith 19187fc3c18eSBarry Smith PetscFunctionBegin; 19197fc3c18eSBarry Smith a = matA->A; b = matA->B; 19207fc3c18eSBarry Smith c = matB->A; d = matB->B; 19217fc3c18eSBarry Smith 19227fc3c18eSBarry Smith ierr = MatEqual(a,c,&flg);CHKERRQ(ierr); 1923abc0a331SBarry Smith if (flg) { 19247fc3c18eSBarry Smith ierr = MatEqual(b,d,&flg);CHKERRQ(ierr); 19257fc3c18eSBarry Smith } 1926ce94432eSBarry Smith ierr = MPI_Allreduce(&flg,flag,1,MPIU_BOOL,MPI_LAND,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 19277fc3c18eSBarry Smith PetscFunctionReturn(0); 19287fc3c18eSBarry Smith } 19297fc3c18eSBarry Smith 19303c896bc6SHong Zhang #undef __FUNCT__ 19313c896bc6SHong Zhang #define __FUNCT__ "MatCopy_MPIBAIJ" 19323c896bc6SHong Zhang PetscErrorCode MatCopy_MPIBAIJ(Mat A,Mat B,MatStructure str) 19333c896bc6SHong Zhang { 19343c896bc6SHong Zhang PetscErrorCode ierr; 19353c896bc6SHong Zhang Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 19363c896bc6SHong Zhang Mat_MPIBAIJ *b = (Mat_MPIBAIJ*)B->data; 19373c896bc6SHong Zhang 19383c896bc6SHong Zhang PetscFunctionBegin; 19393c896bc6SHong Zhang /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */ 19403c896bc6SHong Zhang if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) { 19413c896bc6SHong Zhang ierr = MatCopy_Basic(A,B,str);CHKERRQ(ierr); 19423c896bc6SHong Zhang } else { 19433c896bc6SHong Zhang ierr = MatCopy(a->A,b->A,str);CHKERRQ(ierr); 19443c896bc6SHong Zhang ierr = MatCopy(a->B,b->B,str);CHKERRQ(ierr); 19453c896bc6SHong Zhang } 19463c896bc6SHong Zhang PetscFunctionReturn(0); 19473c896bc6SHong Zhang } 1948273d9f13SBarry Smith 19494a2ae208SSatish Balay #undef __FUNCT__ 19504994cf47SJed Brown #define __FUNCT__ "MatSetUp_MPIBAIJ" 19514994cf47SJed Brown PetscErrorCode MatSetUp_MPIBAIJ(Mat A) 1952273d9f13SBarry Smith { 1953dfbe8321SBarry Smith PetscErrorCode ierr; 1954273d9f13SBarry Smith 1955273d9f13SBarry Smith PetscFunctionBegin; 1956535b19f3SBarry Smith ierr = MatMPIBAIJSetPreallocation(A,A->rmap->bs,PETSC_DEFAULT,0,PETSC_DEFAULT,0);CHKERRQ(ierr); 1957273d9f13SBarry Smith PetscFunctionReturn(0); 1958273d9f13SBarry Smith } 1959273d9f13SBarry Smith 19604fe895cdSHong Zhang #undef __FUNCT__ 19614de5dceeSHong Zhang #define __FUNCT__ "MatAXPYGetPreallocation_MPIBAIJ" 19624de5dceeSHong Zhang PetscErrorCode MatAXPYGetPreallocation_MPIBAIJ(Mat Y,const PetscInt *yltog,Mat X,const PetscInt *xltog,PetscInt *nnz) 19634de5dceeSHong Zhang { 1964001ddc4fSHong Zhang PetscErrorCode ierr; 1965001ddc4fSHong Zhang PetscInt bs = Y->rmap->bs,m = Y->rmap->N/bs; 19664de5dceeSHong Zhang Mat_SeqBAIJ *x = (Mat_SeqBAIJ*)X->data; 19674de5dceeSHong Zhang Mat_SeqBAIJ *y = (Mat_SeqBAIJ*)Y->data; 19684de5dceeSHong Zhang 19694de5dceeSHong Zhang PetscFunctionBegin; 1970001ddc4fSHong Zhang ierr = MatAXPYGetPreallocation_MPIX_private(m,x->i,x->j,xltog,y->i,y->j,yltog,nnz);CHKERRQ(ierr); 19714de5dceeSHong Zhang PetscFunctionReturn(0); 19724de5dceeSHong Zhang } 19734de5dceeSHong Zhang 19744de5dceeSHong Zhang #undef __FUNCT__ 19754fe895cdSHong Zhang #define __FUNCT__ "MatAXPY_MPIBAIJ" 19764fe895cdSHong Zhang PetscErrorCode MatAXPY_MPIBAIJ(Mat Y,PetscScalar a,Mat X,MatStructure str) 19774fe895cdSHong Zhang { 19784fe895cdSHong Zhang PetscErrorCode ierr; 19794fe895cdSHong Zhang Mat_MPIBAIJ *xx=(Mat_MPIBAIJ*)X->data,*yy=(Mat_MPIBAIJ*)Y->data; 19804fe895cdSHong Zhang PetscBLASInt bnz,one=1; 19814fe895cdSHong Zhang Mat_SeqBAIJ *x,*y; 19824fe895cdSHong Zhang 19834fe895cdSHong Zhang PetscFunctionBegin; 19844fe895cdSHong Zhang if (str == SAME_NONZERO_PATTERN) { 19854fe895cdSHong Zhang PetscScalar alpha = a; 19864fe895cdSHong Zhang x = (Mat_SeqBAIJ*)xx->A->data; 19874fe895cdSHong Zhang y = (Mat_SeqBAIJ*)yy->A->data; 1988c5df96a5SBarry Smith ierr = PetscBLASIntCast(x->nz,&bnz);CHKERRQ(ierr); 19898b83055fSJed Brown PetscStackCallBLAS("BLASaxpy",BLASaxpy_(&bnz,&alpha,x->a,&one,y->a,&one)); 19904fe895cdSHong Zhang x = (Mat_SeqBAIJ*)xx->B->data; 19914fe895cdSHong Zhang y = (Mat_SeqBAIJ*)yy->B->data; 1992c5df96a5SBarry Smith ierr = PetscBLASIntCast(x->nz,&bnz);CHKERRQ(ierr); 19938b83055fSJed Brown PetscStackCallBLAS("BLASaxpy",BLASaxpy_(&bnz,&alpha,x->a,&one,y->a,&one)); 1994a3fa217bSJose E. Roman ierr = PetscObjectStateIncrease((PetscObject)Y);CHKERRQ(ierr); 19954fe895cdSHong Zhang } else { 19964de5dceeSHong Zhang Mat B; 19974de5dceeSHong Zhang PetscInt *nnz_d,*nnz_o,bs=Y->rmap->bs; 19984de5dceeSHong Zhang ierr = PetscMalloc1(yy->A->rmap->N,&nnz_d);CHKERRQ(ierr); 19994de5dceeSHong Zhang ierr = PetscMalloc1(yy->B->rmap->N,&nnz_o);CHKERRQ(ierr); 20004de5dceeSHong Zhang ierr = MatCreate(PetscObjectComm((PetscObject)Y),&B);CHKERRQ(ierr); 20014de5dceeSHong Zhang ierr = PetscObjectSetName((PetscObject)B,((PetscObject)Y)->name);CHKERRQ(ierr); 20024de5dceeSHong Zhang ierr = MatSetSizes(B,Y->rmap->n,Y->cmap->n,Y->rmap->N,Y->cmap->N);CHKERRQ(ierr); 20034de5dceeSHong Zhang ierr = MatSetBlockSizesFromMats(B,Y,Y);CHKERRQ(ierr); 20044de5dceeSHong Zhang ierr = MatSetType(B,MATMPIBAIJ);CHKERRQ(ierr); 20054de5dceeSHong Zhang ierr = MatAXPYGetPreallocation_SeqBAIJ(yy->A,xx->A,nnz_d);CHKERRQ(ierr); 20064de5dceeSHong Zhang ierr = MatAXPYGetPreallocation_MPIBAIJ(yy->B,yy->garray,xx->B,xx->garray,nnz_o);CHKERRQ(ierr); 20074de5dceeSHong Zhang ierr = MatMPIBAIJSetPreallocation(B,bs,0,nnz_d,0,nnz_o);CHKERRQ(ierr); 20084de5dceeSHong Zhang /* MatAXPY_BasicWithPreallocation() for BAIJ matrix is much slower than AIJ, even for bs=1 ! */ 20094de5dceeSHong Zhang ierr = MatAXPY_BasicWithPreallocation(B,Y,a,X,str);CHKERRQ(ierr); 20104de5dceeSHong Zhang ierr = MatHeaderReplace(Y,B);CHKERRQ(ierr); 20114de5dceeSHong Zhang ierr = PetscFree(nnz_d);CHKERRQ(ierr); 20124de5dceeSHong Zhang ierr = PetscFree(nnz_o);CHKERRQ(ierr); 20134fe895cdSHong Zhang } 20144fe895cdSHong Zhang PetscFunctionReturn(0); 20154fe895cdSHong Zhang } 20164fe895cdSHong Zhang 201799cafbc1SBarry Smith #undef __FUNCT__ 201899cafbc1SBarry Smith #define __FUNCT__ "MatRealPart_MPIBAIJ" 201999cafbc1SBarry Smith PetscErrorCode MatRealPart_MPIBAIJ(Mat A) 202099cafbc1SBarry Smith { 202199cafbc1SBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 202299cafbc1SBarry Smith PetscErrorCode ierr; 202399cafbc1SBarry Smith 202499cafbc1SBarry Smith PetscFunctionBegin; 202599cafbc1SBarry Smith ierr = MatRealPart(a->A);CHKERRQ(ierr); 202699cafbc1SBarry Smith ierr = MatRealPart(a->B);CHKERRQ(ierr); 202799cafbc1SBarry Smith PetscFunctionReturn(0); 202899cafbc1SBarry Smith } 202999cafbc1SBarry Smith 203099cafbc1SBarry Smith #undef __FUNCT__ 203199cafbc1SBarry Smith #define __FUNCT__ "MatImaginaryPart_MPIBAIJ" 203299cafbc1SBarry Smith PetscErrorCode MatImaginaryPart_MPIBAIJ(Mat A) 203399cafbc1SBarry Smith { 203499cafbc1SBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 203599cafbc1SBarry Smith PetscErrorCode ierr; 203699cafbc1SBarry Smith 203799cafbc1SBarry Smith PetscFunctionBegin; 203899cafbc1SBarry Smith ierr = MatImaginaryPart(a->A);CHKERRQ(ierr); 203999cafbc1SBarry Smith ierr = MatImaginaryPart(a->B);CHKERRQ(ierr); 204099cafbc1SBarry Smith PetscFunctionReturn(0); 204199cafbc1SBarry Smith } 204299cafbc1SBarry Smith 204382094794SBarry Smith #undef __FUNCT__ 204482094794SBarry Smith #define __FUNCT__ "MatGetSubMatrix_MPIBAIJ" 20454aa3045dSJed Brown PetscErrorCode MatGetSubMatrix_MPIBAIJ(Mat mat,IS isrow,IS iscol,MatReuse call,Mat *newmat) 20464aa3045dSJed Brown { 20474aa3045dSJed Brown PetscErrorCode ierr; 20484aa3045dSJed Brown IS iscol_local; 20494aa3045dSJed Brown PetscInt csize; 20504aa3045dSJed Brown 20514aa3045dSJed Brown PetscFunctionBegin; 20524aa3045dSJed Brown ierr = ISGetLocalSize(iscol,&csize);CHKERRQ(ierr); 2053b79d0421SJed Brown if (call == MAT_REUSE_MATRIX) { 2054b79d0421SJed Brown ierr = PetscObjectQuery((PetscObject)*newmat,"ISAllGather",(PetscObject*)&iscol_local);CHKERRQ(ierr); 2055e32f2f54SBarry Smith if (!iscol_local) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Submatrix passed in was not used before, cannot reuse"); 2056b79d0421SJed Brown } else { 20574aa3045dSJed Brown ierr = ISAllGather(iscol,&iscol_local);CHKERRQ(ierr); 2058b79d0421SJed Brown } 20594aa3045dSJed Brown ierr = MatGetSubMatrix_MPIBAIJ_Private(mat,isrow,iscol_local,csize,call,newmat);CHKERRQ(ierr); 2060b79d0421SJed Brown if (call == MAT_INITIAL_MATRIX) { 2061b79d0421SJed Brown ierr = PetscObjectCompose((PetscObject)*newmat,"ISAllGather",(PetscObject)iscol_local);CHKERRQ(ierr); 20626bf464f9SBarry Smith ierr = ISDestroy(&iscol_local);CHKERRQ(ierr); 2063b79d0421SJed Brown } 20644aa3045dSJed Brown PetscFunctionReturn(0); 20654aa3045dSJed Brown } 206629dcf524SDmitry Karpeev extern PetscErrorCode MatGetSubMatrices_MPIBAIJ_local(Mat,PetscInt,const IS[],const IS[],MatReuse,PetscBool*,PetscBool*,Mat*); 20674aa3045dSJed Brown #undef __FUNCT__ 2068dd183c9eSJed Brown #define __FUNCT__ "MatGetSubMatrix_MPIBAIJ_Private" 206982094794SBarry Smith /* 207082094794SBarry Smith Not great since it makes two copies of the submatrix, first an SeqBAIJ 207182094794SBarry Smith in local and then by concatenating the local matrices the end result. 207282094794SBarry Smith Writing it directly would be much like MatGetSubMatrices_MPIBAIJ() 207382094794SBarry Smith */ 20744aa3045dSJed Brown PetscErrorCode MatGetSubMatrix_MPIBAIJ_Private(Mat mat,IS isrow,IS iscol,PetscInt csize,MatReuse call,Mat *newmat) 207582094794SBarry Smith { 207682094794SBarry Smith PetscErrorCode ierr; 207782094794SBarry Smith PetscMPIInt rank,size; 207882094794SBarry Smith PetscInt i,m,n,rstart,row,rend,nz,*cwork,j,bs; 207929dcf524SDmitry Karpeev PetscInt *ii,*jj,nlocal,*dlens,*olens,dlen,olen,jend,mglobal,ncol,nrow; 208029dcf524SDmitry Karpeev Mat M,Mreuse; 208182094794SBarry Smith MatScalar *vwork,*aa; 2082ce94432eSBarry Smith MPI_Comm comm; 208329dcf524SDmitry Karpeev IS isrow_new, iscol_new; 208429dcf524SDmitry Karpeev PetscBool idflag,allrows, allcols; 208582094794SBarry Smith Mat_SeqBAIJ *aij; 208682094794SBarry Smith 208782094794SBarry Smith PetscFunctionBegin; 2088ce94432eSBarry Smith ierr = PetscObjectGetComm((PetscObject)mat,&comm);CHKERRQ(ierr); 208982094794SBarry Smith ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 209082094794SBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 209129dcf524SDmitry Karpeev /* The compression and expansion should be avoided. Doesn't point 209229dcf524SDmitry Karpeev out errors, might change the indices, hence buggey */ 209329dcf524SDmitry Karpeev ierr = ISCompressIndicesGeneral(mat->rmap->N,mat->rmap->n,mat->rmap->bs,1,&isrow,&isrow_new);CHKERRQ(ierr); 209429dcf524SDmitry Karpeev ierr = ISCompressIndicesGeneral(mat->cmap->N,mat->cmap->n,mat->cmap->bs,1,&iscol,&iscol_new);CHKERRQ(ierr); 209582094794SBarry Smith 209629dcf524SDmitry Karpeev /* Check for special case: each processor gets entire matrix columns */ 209729dcf524SDmitry Karpeev ierr = ISIdentity(iscol,&idflag);CHKERRQ(ierr); 209829dcf524SDmitry Karpeev ierr = ISGetLocalSize(iscol,&ncol);CHKERRQ(ierr); 209926fbe8dcSKarl Rupp if (idflag && ncol == mat->cmap->N) allcols = PETSC_TRUE; 210026fbe8dcSKarl Rupp else allcols = PETSC_FALSE; 210129dcf524SDmitry Karpeev 210229dcf524SDmitry Karpeev ierr = ISIdentity(isrow,&idflag);CHKERRQ(ierr); 210329dcf524SDmitry Karpeev ierr = ISGetLocalSize(isrow,&nrow);CHKERRQ(ierr); 210426fbe8dcSKarl Rupp if (idflag && nrow == mat->rmap->N) allrows = PETSC_TRUE; 210526fbe8dcSKarl Rupp else allrows = PETSC_FALSE; 210626fbe8dcSKarl Rupp 210782094794SBarry Smith if (call == MAT_REUSE_MATRIX) { 210882094794SBarry Smith ierr = PetscObjectQuery((PetscObject)*newmat,"SubMatrix",(PetscObject*)&Mreuse);CHKERRQ(ierr); 2109e32f2f54SBarry Smith if (!Mreuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Submatrix passed in was not used before, cannot reuse"); 211075f6568bSJed Brown ierr = MatGetSubMatrices_MPIBAIJ_local(mat,1,&isrow_new,&iscol_new,MAT_REUSE_MATRIX,&allrows,&allcols,&Mreuse);CHKERRQ(ierr); 211182094794SBarry Smith } else { 211275f6568bSJed Brown ierr = MatGetSubMatrices_MPIBAIJ_local(mat,1,&isrow_new,&iscol_new,MAT_INITIAL_MATRIX,&allrows,&allcols,&Mreuse);CHKERRQ(ierr); 211382094794SBarry Smith } 211429dcf524SDmitry Karpeev ierr = ISDestroy(&isrow_new);CHKERRQ(ierr); 211529dcf524SDmitry Karpeev ierr = ISDestroy(&iscol_new);CHKERRQ(ierr); 211682094794SBarry Smith /* 211782094794SBarry Smith m - number of local rows 211882094794SBarry Smith n - number of columns (same on all processors) 211982094794SBarry Smith rstart - first row in new global matrix generated 212082094794SBarry Smith */ 212182094794SBarry Smith ierr = MatGetBlockSize(mat,&bs);CHKERRQ(ierr); 212282094794SBarry Smith ierr = MatGetSize(Mreuse,&m,&n);CHKERRQ(ierr); 212382094794SBarry Smith m = m/bs; 212482094794SBarry Smith n = n/bs; 212582094794SBarry Smith 212682094794SBarry Smith if (call == MAT_INITIAL_MATRIX) { 212782094794SBarry Smith aij = (Mat_SeqBAIJ*)(Mreuse)->data; 212882094794SBarry Smith ii = aij->i; 212982094794SBarry Smith jj = aij->j; 213082094794SBarry Smith 213182094794SBarry Smith /* 213282094794SBarry Smith Determine the number of non-zeros in the diagonal and off-diagonal 213382094794SBarry Smith portions of the matrix in order to do correct preallocation 213482094794SBarry Smith */ 213582094794SBarry Smith 213682094794SBarry Smith /* first get start and end of "diagonal" columns */ 213782094794SBarry Smith if (csize == PETSC_DECIDE) { 213882094794SBarry Smith ierr = ISGetSize(isrow,&mglobal);CHKERRQ(ierr); 213982094794SBarry Smith if (mglobal == n*bs) { /* square matrix */ 214082094794SBarry Smith nlocal = m; 214182094794SBarry Smith } else { 214282094794SBarry Smith nlocal = n/size + ((n % size) > rank); 214382094794SBarry Smith } 214482094794SBarry Smith } else { 214582094794SBarry Smith nlocal = csize/bs; 214682094794SBarry Smith } 214782094794SBarry Smith ierr = MPI_Scan(&nlocal,&rend,1,MPIU_INT,MPI_SUM,comm);CHKERRQ(ierr); 214882094794SBarry Smith rstart = rend - nlocal; 214965e19b50SBarry Smith if (rank == size - 1 && rend != n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Local column sizes %D do not add up to total number of columns %D",rend,n); 215082094794SBarry Smith 215182094794SBarry Smith /* next, compute all the lengths */ 2152dcca6d9dSJed Brown ierr = PetscMalloc2(m+1,&dlens,m+1,&olens);CHKERRQ(ierr); 215382094794SBarry Smith for (i=0; i<m; i++) { 215482094794SBarry Smith jend = ii[i+1] - ii[i]; 215582094794SBarry Smith olen = 0; 215682094794SBarry Smith dlen = 0; 215782094794SBarry Smith for (j=0; j<jend; j++) { 215882094794SBarry Smith if (*jj < rstart || *jj >= rend) olen++; 215982094794SBarry Smith else dlen++; 216082094794SBarry Smith jj++; 216182094794SBarry Smith } 216282094794SBarry Smith olens[i] = olen; 216382094794SBarry Smith dlens[i] = dlen; 216482094794SBarry Smith } 216582094794SBarry Smith ierr = MatCreate(comm,&M);CHKERRQ(ierr); 216682094794SBarry Smith ierr = MatSetSizes(M,bs*m,bs*nlocal,PETSC_DECIDE,bs*n);CHKERRQ(ierr); 216782094794SBarry Smith ierr = MatSetType(M,((PetscObject)mat)->type_name);CHKERRQ(ierr); 216882094794SBarry Smith ierr = MatMPIBAIJSetPreallocation(M,bs,0,dlens,0,olens);CHKERRQ(ierr); 2169eb9baa12SBarry Smith ierr = PetscFree2(dlens,olens);CHKERRQ(ierr); 217082094794SBarry Smith } else { 217182094794SBarry Smith PetscInt ml,nl; 217282094794SBarry Smith 217382094794SBarry Smith M = *newmat; 217482094794SBarry Smith ierr = MatGetLocalSize(M,&ml,&nl);CHKERRQ(ierr); 2175e32f2f54SBarry Smith if (ml != m) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Previous matrix must be same size/layout as request"); 217682094794SBarry Smith ierr = MatZeroEntries(M);CHKERRQ(ierr); 217782094794SBarry Smith /* 217882094794SBarry Smith The next two lines are needed so we may call MatSetValues_MPIAIJ() below directly, 217982094794SBarry Smith rather than the slower MatSetValues(). 218082094794SBarry Smith */ 218182094794SBarry Smith M->was_assembled = PETSC_TRUE; 218282094794SBarry Smith M->assembled = PETSC_FALSE; 218382094794SBarry Smith } 218482094794SBarry Smith ierr = MatSetOption(M,MAT_ROW_ORIENTED,PETSC_FALSE);CHKERRQ(ierr); 218582094794SBarry Smith ierr = MatGetOwnershipRange(M,&rstart,&rend);CHKERRQ(ierr); 218682094794SBarry Smith aij = (Mat_SeqBAIJ*)(Mreuse)->data; 218782094794SBarry Smith ii = aij->i; 218882094794SBarry Smith jj = aij->j; 218982094794SBarry Smith aa = aij->a; 219082094794SBarry Smith for (i=0; i<m; i++) { 219182094794SBarry Smith row = rstart/bs + i; 219282094794SBarry Smith nz = ii[i+1] - ii[i]; 219382094794SBarry Smith cwork = jj; jj += nz; 219475f6568bSJed Brown vwork = aa; aa += nz*bs*bs; 219582094794SBarry Smith ierr = MatSetValuesBlocked_MPIBAIJ(M,1,&row,nz,cwork,vwork,INSERT_VALUES);CHKERRQ(ierr); 219682094794SBarry Smith } 219782094794SBarry Smith 219882094794SBarry Smith ierr = MatAssemblyBegin(M,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 219982094794SBarry Smith ierr = MatAssemblyEnd(M,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 220082094794SBarry Smith *newmat = M; 220182094794SBarry Smith 220282094794SBarry Smith /* save submatrix used in processor for next request */ 220382094794SBarry Smith if (call == MAT_INITIAL_MATRIX) { 220482094794SBarry Smith ierr = PetscObjectCompose((PetscObject)M,"SubMatrix",(PetscObject)Mreuse);CHKERRQ(ierr); 220582094794SBarry Smith ierr = PetscObjectDereference((PetscObject)Mreuse);CHKERRQ(ierr); 220682094794SBarry Smith } 220782094794SBarry Smith PetscFunctionReturn(0); 220882094794SBarry Smith } 220982094794SBarry Smith 221082094794SBarry Smith #undef __FUNCT__ 221182094794SBarry Smith #define __FUNCT__ "MatPermute_MPIBAIJ" 221282094794SBarry Smith PetscErrorCode MatPermute_MPIBAIJ(Mat A,IS rowp,IS colp,Mat *B) 221382094794SBarry Smith { 221482094794SBarry Smith MPI_Comm comm,pcomm; 2215a0a83eb5SRémi Lacroix PetscInt clocal_size,nrows; 221682094794SBarry Smith const PetscInt *rows; 2217dbf0e21dSBarry Smith PetscMPIInt size; 2218a0a83eb5SRémi Lacroix IS crowp,lcolp; 221982094794SBarry Smith PetscErrorCode ierr; 222082094794SBarry Smith 222182094794SBarry Smith PetscFunctionBegin; 222282094794SBarry Smith ierr = PetscObjectGetComm((PetscObject)A,&comm);CHKERRQ(ierr); 222382094794SBarry Smith /* make a collective version of 'rowp' */ 222482094794SBarry Smith ierr = PetscObjectGetComm((PetscObject)rowp,&pcomm);CHKERRQ(ierr); 222582094794SBarry Smith if (pcomm==comm) { 222682094794SBarry Smith crowp = rowp; 222782094794SBarry Smith } else { 222882094794SBarry Smith ierr = ISGetSize(rowp,&nrows);CHKERRQ(ierr); 222982094794SBarry Smith ierr = ISGetIndices(rowp,&rows);CHKERRQ(ierr); 223070b3c8c7SBarry Smith ierr = ISCreateGeneral(comm,nrows,rows,PETSC_COPY_VALUES,&crowp);CHKERRQ(ierr); 223182094794SBarry Smith ierr = ISRestoreIndices(rowp,&rows);CHKERRQ(ierr); 223282094794SBarry Smith } 2233a0a83eb5SRémi Lacroix ierr = ISSetPermutation(crowp);CHKERRQ(ierr); 2234a0a83eb5SRémi Lacroix /* make a local version of 'colp' */ 223582094794SBarry Smith ierr = PetscObjectGetComm((PetscObject)colp,&pcomm);CHKERRQ(ierr); 2236dbf0e21dSBarry Smith ierr = MPI_Comm_size(pcomm,&size);CHKERRQ(ierr); 2237dbf0e21dSBarry Smith if (size==1) { 223882094794SBarry Smith lcolp = colp; 223982094794SBarry Smith } else { 224075f6568bSJed Brown ierr = ISAllGather(colp,&lcolp);CHKERRQ(ierr); 224182094794SBarry Smith } 2242dbf0e21dSBarry Smith ierr = ISSetPermutation(lcolp);CHKERRQ(ierr); 224375f6568bSJed Brown /* now we just get the submatrix */ 22447afc1a8bSJed Brown ierr = MatGetLocalSize(A,NULL,&clocal_size);CHKERRQ(ierr); 2245a0a83eb5SRémi Lacroix ierr = MatGetSubMatrix_MPIBAIJ_Private(A,crowp,lcolp,clocal_size,MAT_INITIAL_MATRIX,B);CHKERRQ(ierr); 2246a0a83eb5SRémi Lacroix /* clean up */ 2247a0a83eb5SRémi Lacroix if (pcomm!=comm) { 2248a0a83eb5SRémi Lacroix ierr = ISDestroy(&crowp);CHKERRQ(ierr); 2249a0a83eb5SRémi Lacroix } 2250dbf0e21dSBarry Smith if (size>1) { 22516bf464f9SBarry Smith ierr = ISDestroy(&lcolp);CHKERRQ(ierr); 225282094794SBarry Smith } 225382094794SBarry Smith PetscFunctionReturn(0); 225482094794SBarry Smith } 225582094794SBarry Smith 22568c7482ecSBarry Smith #undef __FUNCT__ 22578c7482ecSBarry Smith #define __FUNCT__ "MatGetGhosts_MPIBAIJ" 22587087cfbeSBarry Smith PetscErrorCode MatGetGhosts_MPIBAIJ(Mat mat,PetscInt *nghosts,const PetscInt *ghosts[]) 22598c7482ecSBarry Smith { 22608c7482ecSBarry Smith Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*) mat->data; 22618c7482ecSBarry Smith Mat_SeqBAIJ *B = (Mat_SeqBAIJ*)baij->B->data; 22628c7482ecSBarry Smith 22638c7482ecSBarry Smith PetscFunctionBegin; 226426fbe8dcSKarl Rupp if (nghosts) *nghosts = B->nbs; 226526fbe8dcSKarl Rupp if (ghosts) *ghosts = baij->garray; 22668c7482ecSBarry Smith PetscFunctionReturn(0); 22678c7482ecSBarry Smith } 22688c7482ecSBarry Smith 2269f6d58c54SBarry Smith #undef __FUNCT__ 2270d1adec66SJed Brown #define __FUNCT__ "MatGetSeqNonzeroStructure_MPIBAIJ" 2271d1adec66SJed Brown PetscErrorCode MatGetSeqNonzeroStructure_MPIBAIJ(Mat A,Mat *newmat) 2272f6d58c54SBarry Smith { 2273f6d58c54SBarry Smith Mat B; 2274f6d58c54SBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 2275f6d58c54SBarry Smith Mat_SeqBAIJ *ad = (Mat_SeqBAIJ*)a->A->data,*bd = (Mat_SeqBAIJ*)a->B->data; 2276f6d58c54SBarry Smith Mat_SeqAIJ *b; 2277f6d58c54SBarry Smith PetscErrorCode ierr; 2278f6d58c54SBarry Smith PetscMPIInt size,rank,*recvcounts = 0,*displs = 0; 2279f6d58c54SBarry Smith PetscInt sendcount,i,*rstarts = A->rmap->range,n,cnt,j,bs = A->rmap->bs; 2280f6d58c54SBarry Smith PetscInt m,*garray = a->garray,*lens,*jsendbuf,*a_jsendbuf,*b_jsendbuf; 2281f6d58c54SBarry Smith 2282f6d58c54SBarry Smith PetscFunctionBegin; 2283ce94432eSBarry Smith ierr = MPI_Comm_size(PetscObjectComm((PetscObject)A),&size);CHKERRQ(ierr); 2284ce94432eSBarry Smith ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)A),&rank);CHKERRQ(ierr); 2285f6d58c54SBarry Smith 2286f6d58c54SBarry Smith /* ---------------------------------------------------------------- 2287f6d58c54SBarry Smith Tell every processor the number of nonzeros per row 2288f6d58c54SBarry Smith */ 2289785e854fSJed Brown ierr = PetscMalloc1((A->rmap->N/bs),&lens);CHKERRQ(ierr); 2290f6d58c54SBarry Smith for (i=A->rmap->rstart/bs; i<A->rmap->rend/bs; i++) { 2291f6d58c54SBarry Smith lens[i] = ad->i[i-A->rmap->rstart/bs+1] - ad->i[i-A->rmap->rstart/bs] + bd->i[i-A->rmap->rstart/bs+1] - bd->i[i-A->rmap->rstart/bs]; 2292f6d58c54SBarry Smith } 2293f6d58c54SBarry Smith sendcount = A->rmap->rend/bs - A->rmap->rstart/bs; 2294785e854fSJed Brown ierr = PetscMalloc1(2*size,&recvcounts);CHKERRQ(ierr); 2295f6d58c54SBarry Smith displs = recvcounts + size; 2296f6d58c54SBarry Smith for (i=0; i<size; i++) { 2297f6d58c54SBarry Smith recvcounts[i] = A->rmap->range[i+1]/bs - A->rmap->range[i]/bs; 2298f6d58c54SBarry Smith displs[i] = A->rmap->range[i]/bs; 2299f6d58c54SBarry Smith } 2300f6d58c54SBarry Smith #if defined(PETSC_HAVE_MPI_IN_PLACE) 2301ce94432eSBarry Smith ierr = MPI_Allgatherv(MPI_IN_PLACE,0,MPI_DATATYPE_NULL,lens,recvcounts,displs,MPIU_INT,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 2302f6d58c54SBarry Smith #else 2303ce94432eSBarry Smith ierr = MPI_Allgatherv(lens+A->rmap->rstart/bs,sendcount,MPIU_INT,lens,recvcounts,displs,MPIU_INT,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 2304f6d58c54SBarry Smith #endif 2305f6d58c54SBarry Smith /* --------------------------------------------------------------- 2306f6d58c54SBarry Smith Create the sequential matrix of the same type as the local block diagonal 2307f6d58c54SBarry Smith */ 2308f6d58c54SBarry Smith ierr = MatCreate(PETSC_COMM_SELF,&B);CHKERRQ(ierr); 2309f6d58c54SBarry Smith ierr = MatSetSizes(B,A->rmap->N/bs,A->cmap->N/bs,PETSC_DETERMINE,PETSC_DETERMINE);CHKERRQ(ierr); 2310f6d58c54SBarry Smith ierr = MatSetType(B,MATSEQAIJ);CHKERRQ(ierr); 2311f6d58c54SBarry Smith ierr = MatSeqAIJSetPreallocation(B,0,lens);CHKERRQ(ierr); 2312f6d58c54SBarry Smith b = (Mat_SeqAIJ*)B->data; 2313f6d58c54SBarry Smith 2314f6d58c54SBarry Smith /*-------------------------------------------------------------------- 2315f6d58c54SBarry Smith Copy my part of matrix column indices over 2316f6d58c54SBarry Smith */ 2317f6d58c54SBarry Smith sendcount = ad->nz + bd->nz; 2318f6d58c54SBarry Smith jsendbuf = b->j + b->i[rstarts[rank]/bs]; 2319f6d58c54SBarry Smith a_jsendbuf = ad->j; 2320f6d58c54SBarry Smith b_jsendbuf = bd->j; 2321f6d58c54SBarry Smith n = A->rmap->rend/bs - A->rmap->rstart/bs; 2322f6d58c54SBarry Smith cnt = 0; 2323f6d58c54SBarry Smith for (i=0; i<n; i++) { 2324f6d58c54SBarry Smith 2325f6d58c54SBarry Smith /* put in lower diagonal portion */ 2326f6d58c54SBarry Smith m = bd->i[i+1] - bd->i[i]; 2327f6d58c54SBarry Smith while (m > 0) { 2328f6d58c54SBarry Smith /* is it above diagonal (in bd (compressed) numbering) */ 2329f6d58c54SBarry Smith if (garray[*b_jsendbuf] > A->rmap->rstart/bs + i) break; 2330f6d58c54SBarry Smith jsendbuf[cnt++] = garray[*b_jsendbuf++]; 2331f6d58c54SBarry Smith m--; 2332f6d58c54SBarry Smith } 2333f6d58c54SBarry Smith 2334f6d58c54SBarry Smith /* put in diagonal portion */ 2335f6d58c54SBarry Smith for (j=ad->i[i]; j<ad->i[i+1]; j++) { 2336f6d58c54SBarry Smith jsendbuf[cnt++] = A->rmap->rstart/bs + *a_jsendbuf++; 2337f6d58c54SBarry Smith } 2338f6d58c54SBarry Smith 2339f6d58c54SBarry Smith /* put in upper diagonal portion */ 2340f6d58c54SBarry Smith while (m-- > 0) { 2341f6d58c54SBarry Smith jsendbuf[cnt++] = garray[*b_jsendbuf++]; 2342f6d58c54SBarry Smith } 2343f6d58c54SBarry Smith } 2344e32f2f54SBarry Smith if (cnt != sendcount) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Corrupted PETSc matrix: nz given %D actual nz %D",sendcount,cnt); 2345f6d58c54SBarry Smith 2346f6d58c54SBarry Smith /*-------------------------------------------------------------------- 2347f6d58c54SBarry Smith Gather all column indices to all processors 2348f6d58c54SBarry Smith */ 2349f6d58c54SBarry Smith for (i=0; i<size; i++) { 2350f6d58c54SBarry Smith recvcounts[i] = 0; 2351f6d58c54SBarry Smith for (j=A->rmap->range[i]/bs; j<A->rmap->range[i+1]/bs; j++) { 2352f6d58c54SBarry Smith recvcounts[i] += lens[j]; 2353f6d58c54SBarry Smith } 2354f6d58c54SBarry Smith } 2355f6d58c54SBarry Smith displs[0] = 0; 2356f6d58c54SBarry Smith for (i=1; i<size; i++) { 2357f6d58c54SBarry Smith displs[i] = displs[i-1] + recvcounts[i-1]; 2358f6d58c54SBarry Smith } 2359f6d58c54SBarry Smith #if defined(PETSC_HAVE_MPI_IN_PLACE) 2360ce94432eSBarry Smith ierr = MPI_Allgatherv(MPI_IN_PLACE,0,MPI_DATATYPE_NULL,b->j,recvcounts,displs,MPIU_INT,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 2361f6d58c54SBarry Smith #else 2362ce94432eSBarry Smith ierr = MPI_Allgatherv(jsendbuf,sendcount,MPIU_INT,b->j,recvcounts,displs,MPIU_INT,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 2363f6d58c54SBarry Smith #endif 2364f6d58c54SBarry Smith /*-------------------------------------------------------------------- 2365f6d58c54SBarry Smith Assemble the matrix into useable form (note numerical values not yet set) 2366f6d58c54SBarry Smith */ 2367f6d58c54SBarry Smith /* set the b->ilen (length of each row) values */ 2368f6d58c54SBarry Smith ierr = PetscMemcpy(b->ilen,lens,(A->rmap->N/bs)*sizeof(PetscInt));CHKERRQ(ierr); 2369f6d58c54SBarry Smith /* set the b->i indices */ 2370f6d58c54SBarry Smith b->i[0] = 0; 2371f6d58c54SBarry Smith for (i=1; i<=A->rmap->N/bs; i++) { 2372f6d58c54SBarry Smith b->i[i] = b->i[i-1] + lens[i-1]; 2373f6d58c54SBarry Smith } 2374f6d58c54SBarry Smith ierr = PetscFree(lens);CHKERRQ(ierr); 2375f6d58c54SBarry Smith ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 2376f6d58c54SBarry Smith ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 2377f6d58c54SBarry Smith ierr = PetscFree(recvcounts);CHKERRQ(ierr); 2378f6d58c54SBarry Smith 2379f6d58c54SBarry Smith if (A->symmetric) { 2380f6d58c54SBarry Smith ierr = MatSetOption(B,MAT_SYMMETRIC,PETSC_TRUE);CHKERRQ(ierr); 2381f6d58c54SBarry Smith } else if (A->hermitian) { 2382f6d58c54SBarry Smith ierr = MatSetOption(B,MAT_HERMITIAN,PETSC_TRUE);CHKERRQ(ierr); 2383f6d58c54SBarry Smith } else if (A->structurally_symmetric) { 2384f6d58c54SBarry Smith ierr = MatSetOption(B,MAT_STRUCTURALLY_SYMMETRIC,PETSC_TRUE);CHKERRQ(ierr); 2385f6d58c54SBarry Smith } 2386f6d58c54SBarry Smith *newmat = B; 2387f6d58c54SBarry Smith PetscFunctionReturn(0); 2388f6d58c54SBarry Smith } 2389f6d58c54SBarry Smith 2390b1a666ecSBarry Smith #undef __FUNCT__ 2391b1a666ecSBarry Smith #define __FUNCT__ "MatSOR_MPIBAIJ" 2392b1a666ecSBarry Smith PetscErrorCode MatSOR_MPIBAIJ(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx) 2393b1a666ecSBarry Smith { 2394b1a666ecSBarry Smith Mat_MPIBAIJ *mat = (Mat_MPIBAIJ*)matin->data; 2395b1a666ecSBarry Smith PetscErrorCode ierr; 2396b1a666ecSBarry Smith Vec bb1 = 0; 2397b1a666ecSBarry Smith 2398b1a666ecSBarry Smith PetscFunctionBegin; 2399b1a666ecSBarry Smith if (flag == SOR_APPLY_UPPER) { 2400b1a666ecSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr); 2401b1a666ecSBarry Smith PetscFunctionReturn(0); 2402b1a666ecSBarry Smith } 2403b1a666ecSBarry Smith 24044e980039SJed Brown if (its > 1 || ~flag & SOR_ZERO_INITIAL_GUESS) { 24054e980039SJed Brown ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr); 24064e980039SJed Brown } 24074e980039SJed Brown 2408b1a666ecSBarry Smith if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP) { 2409b1a666ecSBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 2410b1a666ecSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr); 2411b1a666ecSBarry Smith its--; 2412b1a666ecSBarry Smith } 2413b1a666ecSBarry Smith 2414b1a666ecSBarry Smith while (its--) { 2415b1a666ecSBarry Smith ierr = VecScatterBegin(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 2416b1a666ecSBarry Smith ierr = VecScatterEnd(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 2417b1a666ecSBarry Smith 2418b1a666ecSBarry Smith /* update rhs: bb1 = bb - B*x */ 2419b1a666ecSBarry Smith ierr = VecScale(mat->lvec,-1.0);CHKERRQ(ierr); 2420b1a666ecSBarry Smith ierr = (*mat->B->ops->multadd)(mat->B,mat->lvec,bb,bb1);CHKERRQ(ierr); 2421b1a666ecSBarry Smith 2422b1a666ecSBarry Smith /* local sweep */ 2423b1a666ecSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,1,xx);CHKERRQ(ierr); 2424b1a666ecSBarry Smith } 2425b1a666ecSBarry Smith } else if (flag & SOR_LOCAL_FORWARD_SWEEP) { 2426b1a666ecSBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 2427b1a666ecSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr); 2428b1a666ecSBarry Smith its--; 2429b1a666ecSBarry Smith } 2430b1a666ecSBarry Smith while (its--) { 2431b1a666ecSBarry Smith ierr = VecScatterBegin(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 2432b1a666ecSBarry Smith ierr = VecScatterEnd(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 2433b1a666ecSBarry Smith 2434b1a666ecSBarry Smith /* update rhs: bb1 = bb - B*x */ 2435b1a666ecSBarry Smith ierr = VecScale(mat->lvec,-1.0);CHKERRQ(ierr); 2436b1a666ecSBarry Smith ierr = (*mat->B->ops->multadd)(mat->B,mat->lvec,bb,bb1);CHKERRQ(ierr); 2437b1a666ecSBarry Smith 2438b1a666ecSBarry Smith /* local sweep */ 2439b1a666ecSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_FORWARD_SWEEP,fshift,lits,1,xx);CHKERRQ(ierr); 2440b1a666ecSBarry Smith } 2441b1a666ecSBarry Smith } else if (flag & SOR_LOCAL_BACKWARD_SWEEP) { 2442b1a666ecSBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 2443b1a666ecSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr); 2444b1a666ecSBarry Smith its--; 2445b1a666ecSBarry Smith } 2446b1a666ecSBarry Smith while (its--) { 2447b1a666ecSBarry Smith ierr = VecScatterBegin(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 2448b1a666ecSBarry Smith ierr = VecScatterEnd(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 2449b1a666ecSBarry Smith 2450b1a666ecSBarry Smith /* update rhs: bb1 = bb - B*x */ 2451b1a666ecSBarry Smith ierr = VecScale(mat->lvec,-1.0);CHKERRQ(ierr); 2452b1a666ecSBarry Smith ierr = (*mat->B->ops->multadd)(mat->B,mat->lvec,bb,bb1);CHKERRQ(ierr); 2453b1a666ecSBarry Smith 2454b1a666ecSBarry Smith /* local sweep */ 2455b1a666ecSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_BACKWARD_SWEEP,fshift,lits,1,xx);CHKERRQ(ierr); 2456b1a666ecSBarry Smith } 2457ce94432eSBarry Smith } else SETERRQ(PetscObjectComm((PetscObject)matin),PETSC_ERR_SUP,"Parallel version of SOR requested not supported"); 2458b1a666ecSBarry Smith 24596bf464f9SBarry Smith ierr = VecDestroy(&bb1);CHKERRQ(ierr); 2460b1a666ecSBarry Smith PetscFunctionReturn(0); 2461b1a666ecSBarry Smith } 2462b1a666ecSBarry Smith 2463bbead8a2SBarry Smith #undef __FUNCT__ 246447f7623dSRémi Lacroix #define __FUNCT__ "MatGetColumnNorms_MPIBAIJ" 246547f7623dSRémi Lacroix PetscErrorCode MatGetColumnNorms_MPIBAIJ(Mat A,NormType type,PetscReal *norms) 246647f7623dSRémi Lacroix { 246747f7623dSRémi Lacroix PetscErrorCode ierr; 246847f7623dSRémi Lacroix Mat_MPIBAIJ *aij = (Mat_MPIBAIJ*)A->data; 246947f7623dSRémi Lacroix PetscInt N,i,*garray = aij->garray; 247047f7623dSRémi Lacroix PetscInt ib,jb,bs = A->rmap->bs; 247147f7623dSRémi Lacroix Mat_SeqBAIJ *a_aij = (Mat_SeqBAIJ*) aij->A->data; 247247f7623dSRémi Lacroix MatScalar *a_val = a_aij->a; 247347f7623dSRémi Lacroix Mat_SeqBAIJ *b_aij = (Mat_SeqBAIJ*) aij->B->data; 247447f7623dSRémi Lacroix MatScalar *b_val = b_aij->a; 247547f7623dSRémi Lacroix PetscReal *work; 247647f7623dSRémi Lacroix 247747f7623dSRémi Lacroix PetscFunctionBegin; 247847f7623dSRémi Lacroix ierr = MatGetSize(A,NULL,&N);CHKERRQ(ierr); 24791795a4d1SJed Brown ierr = PetscCalloc1(N,&work);CHKERRQ(ierr); 248047f7623dSRémi Lacroix if (type == NORM_2) { 248147f7623dSRémi Lacroix for (i=a_aij->i[0]; i<a_aij->i[aij->A->rmap->n/bs]; i++) { 248247f7623dSRémi Lacroix for (jb=0; jb<bs; jb++) { 248347f7623dSRémi Lacroix for (ib=0; ib<bs; ib++) { 248447f7623dSRémi Lacroix work[A->cmap->rstart + a_aij->j[i] * bs + jb] += PetscAbsScalar(*a_val * *a_val); 248547f7623dSRémi Lacroix a_val++; 248647f7623dSRémi Lacroix } 248747f7623dSRémi Lacroix } 248847f7623dSRémi Lacroix } 248947f7623dSRémi Lacroix for (i=b_aij->i[0]; i<b_aij->i[aij->B->rmap->n/bs]; i++) { 249047f7623dSRémi Lacroix for (jb=0; jb<bs; jb++) { 249147f7623dSRémi Lacroix for (ib=0; ib<bs; ib++) { 249247f7623dSRémi Lacroix work[garray[b_aij->j[i]] * bs + jb] += PetscAbsScalar(*b_val * *b_val); 249347f7623dSRémi Lacroix b_val++; 249447f7623dSRémi Lacroix } 249547f7623dSRémi Lacroix } 249647f7623dSRémi Lacroix } 249747f7623dSRémi Lacroix } else if (type == NORM_1) { 249847f7623dSRémi Lacroix for (i=a_aij->i[0]; i<a_aij->i[aij->A->rmap->n/bs]; i++) { 249947f7623dSRémi Lacroix for (jb=0; jb<bs; jb++) { 250047f7623dSRémi Lacroix for (ib=0; ib<bs; ib++) { 250147f7623dSRémi Lacroix work[A->cmap->rstart + a_aij->j[i] * bs + jb] += PetscAbsScalar(*a_val); 250247f7623dSRémi Lacroix a_val++; 250347f7623dSRémi Lacroix } 250447f7623dSRémi Lacroix } 250547f7623dSRémi Lacroix } 250647f7623dSRémi Lacroix for (i=b_aij->i[0]; i<b_aij->i[aij->B->rmap->n/bs]; i++) { 250747f7623dSRémi Lacroix for (jb=0; jb<bs; jb++) { 250847f7623dSRémi Lacroix for (ib=0; ib<bs; ib++) { 250947f7623dSRémi Lacroix work[garray[b_aij->j[i]] * bs + jb] += PetscAbsScalar(*b_val); 251047f7623dSRémi Lacroix b_val++; 251147f7623dSRémi Lacroix } 251247f7623dSRémi Lacroix } 251347f7623dSRémi Lacroix } 251447f7623dSRémi Lacroix } else if (type == NORM_INFINITY) { 251547f7623dSRémi Lacroix for (i=a_aij->i[0]; i<a_aij->i[aij->A->rmap->n/bs]; i++) { 251647f7623dSRémi Lacroix for (jb=0; jb<bs; jb++) { 251747f7623dSRémi Lacroix for (ib=0; ib<bs; ib++) { 251847f7623dSRémi Lacroix int col = A->cmap->rstart + a_aij->j[i] * bs + jb; 251947f7623dSRémi Lacroix work[col] = PetscMax(PetscAbsScalar(*a_val), work[col]); 252047f7623dSRémi Lacroix a_val++; 252147f7623dSRémi Lacroix } 252247f7623dSRémi Lacroix } 252347f7623dSRémi Lacroix } 252447f7623dSRémi Lacroix for (i=b_aij->i[0]; i<b_aij->i[aij->B->rmap->n/bs]; i++) { 252547f7623dSRémi Lacroix for (jb=0; jb<bs; jb++) { 252647f7623dSRémi Lacroix for (ib=0; ib<bs; ib++) { 252747f7623dSRémi Lacroix int col = garray[b_aij->j[i]] * bs + jb; 252847f7623dSRémi Lacroix work[col] = PetscMax(PetscAbsScalar(*b_val), work[col]); 252947f7623dSRémi Lacroix b_val++; 253047f7623dSRémi Lacroix } 253147f7623dSRémi Lacroix } 253247f7623dSRémi Lacroix } 253347f7623dSRémi Lacroix } else SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ARG_WRONG,"Unknown NormType"); 253447f7623dSRémi Lacroix if (type == NORM_INFINITY) { 253547f7623dSRémi Lacroix ierr = MPI_Allreduce(work,norms,N,MPIU_REAL,MPIU_MAX,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 253647f7623dSRémi Lacroix } else { 253747f7623dSRémi Lacroix ierr = MPI_Allreduce(work,norms,N,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 253847f7623dSRémi Lacroix } 253947f7623dSRémi Lacroix ierr = PetscFree(work);CHKERRQ(ierr); 254047f7623dSRémi Lacroix if (type == NORM_2) { 254147f7623dSRémi Lacroix for (i=0; i<N; i++) norms[i] = PetscSqrtReal(norms[i]); 254247f7623dSRémi Lacroix } 254347f7623dSRémi Lacroix PetscFunctionReturn(0); 254447f7623dSRémi Lacroix } 254547f7623dSRémi Lacroix 254647f7623dSRémi Lacroix #undef __FUNCT__ 2547bbead8a2SBarry Smith #define __FUNCT__ "MatInvertBlockDiagonal_MPIBAIJ" 2548713ccfa9SJed Brown PetscErrorCode MatInvertBlockDiagonal_MPIBAIJ(Mat A,const PetscScalar **values) 2549bbead8a2SBarry Smith { 2550bbead8a2SBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ*) A->data; 2551bbead8a2SBarry Smith PetscErrorCode ierr; 2552bbead8a2SBarry Smith 2553bbead8a2SBarry Smith PetscFunctionBegin; 2554bbead8a2SBarry Smith ierr = MatInvertBlockDiagonal(a->A,values);CHKERRQ(ierr); 2555bbead8a2SBarry Smith PetscFunctionReturn(0); 2556bbead8a2SBarry Smith } 2557bbead8a2SBarry Smith 25588c7482ecSBarry Smith 255979bdfe76SSatish Balay /* -------------------------------------------------------------------*/ 25603964eb88SJed Brown static struct _MatOps MatOps_Values = {MatSetValues_MPIBAIJ, 2561cc2dc46cSBarry Smith MatGetRow_MPIBAIJ, 2562cc2dc46cSBarry Smith MatRestoreRow_MPIBAIJ, 2563cc2dc46cSBarry Smith MatMult_MPIBAIJ, 256497304618SKris Buschelman /* 4*/ MatMultAdd_MPIBAIJ, 25657c922b88SBarry Smith MatMultTranspose_MPIBAIJ, 25667c922b88SBarry Smith MatMultTransposeAdd_MPIBAIJ, 2567cc2dc46cSBarry Smith 0, 2568cc2dc46cSBarry Smith 0, 2569cc2dc46cSBarry Smith 0, 257097304618SKris Buschelman /*10*/ 0, 2571cc2dc46cSBarry Smith 0, 2572cc2dc46cSBarry Smith 0, 2573b1a666ecSBarry Smith MatSOR_MPIBAIJ, 2574cc2dc46cSBarry Smith MatTranspose_MPIBAIJ, 257597304618SKris Buschelman /*15*/ MatGetInfo_MPIBAIJ, 25767fc3c18eSBarry Smith MatEqual_MPIBAIJ, 2577cc2dc46cSBarry Smith MatGetDiagonal_MPIBAIJ, 2578cc2dc46cSBarry Smith MatDiagonalScale_MPIBAIJ, 2579cc2dc46cSBarry Smith MatNorm_MPIBAIJ, 258097304618SKris Buschelman /*20*/ MatAssemblyBegin_MPIBAIJ, 2581cc2dc46cSBarry Smith MatAssemblyEnd_MPIBAIJ, 2582cc2dc46cSBarry Smith MatSetOption_MPIBAIJ, 2583cc2dc46cSBarry Smith MatZeroEntries_MPIBAIJ, 2584d519adbfSMatthew Knepley /*24*/ MatZeroRows_MPIBAIJ, 2585cc2dc46cSBarry Smith 0, 2586cc2dc46cSBarry Smith 0, 2587cc2dc46cSBarry Smith 0, 2588cc2dc46cSBarry Smith 0, 25894994cf47SJed Brown /*29*/ MatSetUp_MPIBAIJ, 2590273d9f13SBarry Smith 0, 2591cc2dc46cSBarry Smith 0, 2592cc2dc46cSBarry Smith 0, 2593cc2dc46cSBarry Smith 0, 2594d519adbfSMatthew Knepley /*34*/ MatDuplicate_MPIBAIJ, 2595cc2dc46cSBarry Smith 0, 2596cc2dc46cSBarry Smith 0, 2597cc2dc46cSBarry Smith 0, 2598cc2dc46cSBarry Smith 0, 2599d519adbfSMatthew Knepley /*39*/ MatAXPY_MPIBAIJ, 2600cc2dc46cSBarry Smith MatGetSubMatrices_MPIBAIJ, 2601cc2dc46cSBarry Smith MatIncreaseOverlap_MPIBAIJ, 2602cc2dc46cSBarry Smith MatGetValues_MPIBAIJ, 26033c896bc6SHong Zhang MatCopy_MPIBAIJ, 2604d519adbfSMatthew Knepley /*44*/ 0, 2605cc2dc46cSBarry Smith MatScale_MPIBAIJ, 2606cc2dc46cSBarry Smith 0, 2607cc2dc46cSBarry Smith 0, 26086f0a72daSMatthew G. Knepley MatZeroRowsColumns_MPIBAIJ, 2609f73d5cc4SBarry Smith /*49*/ 0, 2610cc2dc46cSBarry Smith 0, 2611cc2dc46cSBarry Smith 0, 2612cc2dc46cSBarry Smith 0, 2613cc2dc46cSBarry Smith 0, 261493dfae19SHong Zhang /*54*/ MatFDColoringCreate_MPIXAIJ, 2615cc2dc46cSBarry Smith 0, 2616cc2dc46cSBarry Smith MatSetUnfactored_MPIBAIJ, 261782094794SBarry Smith MatPermute_MPIBAIJ, 2618cc2dc46cSBarry Smith MatSetValuesBlocked_MPIBAIJ, 2619d519adbfSMatthew Knepley /*59*/ MatGetSubMatrix_MPIBAIJ, 2620f14a1c24SBarry Smith MatDestroy_MPIBAIJ, 2621f14a1c24SBarry Smith MatView_MPIBAIJ, 2622357abbc8SBarry Smith 0, 26237843d17aSBarry Smith 0, 2624d519adbfSMatthew Knepley /*64*/ 0, 26257843d17aSBarry Smith 0, 26267843d17aSBarry Smith 0, 26277843d17aSBarry Smith 0, 26287843d17aSBarry Smith 0, 2629d519adbfSMatthew Knepley /*69*/ MatGetRowMaxAbs_MPIBAIJ, 26307843d17aSBarry Smith 0, 263197304618SKris Buschelman 0, 263297304618SKris Buschelman 0, 263397304618SKris Buschelman 0, 2634d519adbfSMatthew Knepley /*74*/ 0, 2635f6d58c54SBarry Smith MatFDColoringApply_BAIJ, 263697304618SKris Buschelman 0, 263797304618SKris Buschelman 0, 263897304618SKris Buschelman 0, 2639d519adbfSMatthew Knepley /*79*/ 0, 264097304618SKris Buschelman 0, 264197304618SKris Buschelman 0, 264297304618SKris Buschelman 0, 26435bba2384SShri Abhyankar MatLoad_MPIBAIJ, 2644d519adbfSMatthew Knepley /*84*/ 0, 2645865e5f61SKris Buschelman 0, 2646865e5f61SKris Buschelman 0, 2647865e5f61SKris Buschelman 0, 2648865e5f61SKris Buschelman 0, 2649d519adbfSMatthew Knepley /*89*/ 0, 2650865e5f61SKris Buschelman 0, 2651865e5f61SKris Buschelman 0, 2652865e5f61SKris Buschelman 0, 2653865e5f61SKris Buschelman 0, 2654d519adbfSMatthew Knepley /*94*/ 0, 2655865e5f61SKris Buschelman 0, 2656865e5f61SKris Buschelman 0, 265799cafbc1SBarry Smith 0, 265899cafbc1SBarry Smith 0, 2659d519adbfSMatthew Knepley /*99*/ 0, 266099cafbc1SBarry Smith 0, 266199cafbc1SBarry Smith 0, 266299cafbc1SBarry Smith 0, 266399cafbc1SBarry Smith 0, 2664d519adbfSMatthew Knepley /*104*/0, 266599cafbc1SBarry Smith MatRealPart_MPIBAIJ, 26668c7482ecSBarry Smith MatImaginaryPart_MPIBAIJ, 26678c7482ecSBarry Smith 0, 26688c7482ecSBarry Smith 0, 2669d519adbfSMatthew Knepley /*109*/0, 26708c7482ecSBarry Smith 0, 26718c7482ecSBarry Smith 0, 26728c7482ecSBarry Smith 0, 26738c7482ecSBarry Smith 0, 2674d1adec66SJed Brown /*114*/MatGetSeqNonzeroStructure_MPIBAIJ, 26758c7482ecSBarry Smith 0, 26764683f7a4SShri Abhyankar MatGetGhosts_MPIBAIJ, 26774683f7a4SShri Abhyankar 0, 26784683f7a4SShri Abhyankar 0, 26794683f7a4SShri Abhyankar /*119*/0, 26804683f7a4SShri Abhyankar 0, 26814683f7a4SShri Abhyankar 0, 2682bbead8a2SBarry Smith 0, 2683e8271787SHong Zhang MatGetMultiProcBlock_MPIBAIJ, 2684bbead8a2SBarry Smith /*124*/0, 268547f7623dSRémi Lacroix MatGetColumnNorms_MPIBAIJ, 26863964eb88SJed Brown MatInvertBlockDiagonal_MPIBAIJ, 26873964eb88SJed Brown 0, 26883964eb88SJed Brown 0, 26893964eb88SJed Brown /*129*/ 0, 26903964eb88SJed Brown 0, 26913964eb88SJed Brown 0, 26923964eb88SJed Brown 0, 26933964eb88SJed Brown 0, 26943964eb88SJed Brown /*134*/ 0, 26953964eb88SJed Brown 0, 26963964eb88SJed Brown 0, 26973964eb88SJed Brown 0, 26983964eb88SJed Brown 0, 26993964eb88SJed Brown /*139*/ 0, 2700f9426fe0SMark Adams 0, 27011919a2e2SJed Brown 0, 2702f86b9fbaSHong Zhang MatFDColoringSetUp_MPIXAIJ 27038c7482ecSBarry Smith }; 270479bdfe76SSatish Balay 27054a2ae208SSatish Balay #undef __FUNCT__ 27064a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonalBlock_MPIBAIJ" 270711bd1e4dSLisandro Dalcin PetscErrorCode MatGetDiagonalBlock_MPIBAIJ(Mat A,Mat *a) 27085ef9f2a5SBarry Smith { 27095ef9f2a5SBarry Smith PetscFunctionBegin; 27105ef9f2a5SBarry Smith *a = ((Mat_MPIBAIJ*)A->data)->A; 27115ef9f2a5SBarry Smith PetscFunctionReturn(0); 27125ef9f2a5SBarry Smith } 271379bdfe76SSatish Balay 27148cc058d9SJed Brown PETSC_EXTERN PetscErrorCode MatConvert_MPIBAIJ_MPISBAIJ(Mat, MatType,MatReuse,Mat*); 2715d94109b8SHong Zhang 2716aac34f13SBarry Smith #undef __FUNCT__ 2717aac34f13SBarry Smith #define __FUNCT__ "MatMPIBAIJSetPreallocationCSR_MPIBAIJ" 2718cf12db73SBarry Smith PetscErrorCode MatMPIBAIJSetPreallocationCSR_MPIBAIJ(Mat B,PetscInt bs,const PetscInt ii[],const PetscInt jj[],const PetscScalar V[]) 2719aac34f13SBarry Smith { 2720b8d659d7SLisandro Dalcin PetscInt m,rstart,cstart,cend; 2721b8d659d7SLisandro Dalcin PetscInt i,j,d,nz,nz_max=0,*d_nnz=0,*o_nnz=0; 2722b8d659d7SLisandro Dalcin const PetscInt *JJ =0; 2723b8d659d7SLisandro Dalcin PetscScalar *values=0; 2724d47bf9aaSJed Brown PetscBool roworiented = ((Mat_MPIBAIJ*)B->data)->roworiented; 2725aac34f13SBarry Smith PetscErrorCode ierr; 2726aac34f13SBarry Smith 2727aac34f13SBarry Smith PetscFunctionBegin; 272826283091SBarry Smith ierr = PetscLayoutSetBlockSize(B->rmap,bs);CHKERRQ(ierr); 272926283091SBarry Smith ierr = PetscLayoutSetBlockSize(B->cmap,bs);CHKERRQ(ierr); 273026283091SBarry Smith ierr = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr); 273126283091SBarry Smith ierr = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr); 2732e02043d6SBarry Smith ierr = PetscLayoutGetBlockSize(B->rmap,&bs);CHKERRQ(ierr); 2733d0f46423SBarry Smith m = B->rmap->n/bs; 2734d0f46423SBarry Smith rstart = B->rmap->rstart/bs; 2735d0f46423SBarry Smith cstart = B->cmap->rstart/bs; 2736d0f46423SBarry Smith cend = B->cmap->rend/bs; 2737b8d659d7SLisandro Dalcin 2738e32f2f54SBarry Smith if (ii[0]) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"ii[0] must be 0 but it is %D",ii[0]); 2739dcca6d9dSJed Brown ierr = PetscMalloc2(m,&d_nnz,m,&o_nnz);CHKERRQ(ierr); 2740aac34f13SBarry Smith for (i=0; i<m; i++) { 2741cf12db73SBarry Smith nz = ii[i+1] - ii[i]; 2742e32f2f54SBarry Smith if (nz < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Local row %D has a negative number of columns %D",i,nz); 2743b8d659d7SLisandro Dalcin nz_max = PetscMax(nz_max,nz); 2744cf12db73SBarry Smith JJ = jj + ii[i]; 2745b8d659d7SLisandro Dalcin for (j=0; j<nz; j++) { 2746aac34f13SBarry Smith if (*JJ >= cstart) break; 2747aac34f13SBarry Smith JJ++; 2748aac34f13SBarry Smith } 2749aac34f13SBarry Smith d = 0; 2750b8d659d7SLisandro Dalcin for (; j<nz; j++) { 2751aac34f13SBarry Smith if (*JJ++ >= cend) break; 2752aac34f13SBarry Smith d++; 2753aac34f13SBarry Smith } 2754aac34f13SBarry Smith d_nnz[i] = d; 2755b8d659d7SLisandro Dalcin o_nnz[i] = nz - d; 2756aac34f13SBarry Smith } 2757aac34f13SBarry Smith ierr = MatMPIBAIJSetPreallocation(B,bs,0,d_nnz,0,o_nnz);CHKERRQ(ierr); 2758fca92195SBarry Smith ierr = PetscFree2(d_nnz,o_nnz);CHKERRQ(ierr); 2759aac34f13SBarry Smith 2760b8d659d7SLisandro Dalcin values = (PetscScalar*)V; 2761b8d659d7SLisandro Dalcin if (!values) { 2762785e854fSJed Brown ierr = PetscMalloc1(bs*bs*nz_max,&values);CHKERRQ(ierr); 2763b8d659d7SLisandro Dalcin ierr = PetscMemzero(values,bs*bs*nz_max*sizeof(PetscScalar));CHKERRQ(ierr); 2764b8d659d7SLisandro Dalcin } 2765b8d659d7SLisandro Dalcin for (i=0; i<m; i++) { 2766b8d659d7SLisandro Dalcin PetscInt row = i + rstart; 2767cf12db73SBarry Smith PetscInt ncols = ii[i+1] - ii[i]; 2768cf12db73SBarry Smith const PetscInt *icols = jj + ii[i]; 27693adadaf3SJed Brown if (!roworiented) { /* block ordering matches the non-nested layout of MatSetValues so we can insert entire rows */ 2770cf12db73SBarry Smith const PetscScalar *svals = values + (V ? (bs*bs*ii[i]) : 0); 2771b8d659d7SLisandro Dalcin ierr = MatSetValuesBlocked_MPIBAIJ(B,1,&row,ncols,icols,svals,INSERT_VALUES);CHKERRQ(ierr); 27723adadaf3SJed Brown } else { /* block ordering does not match so we can only insert one block at a time. */ 27733adadaf3SJed Brown PetscInt j; 27743adadaf3SJed Brown for (j=0; j<ncols; j++) { 27753adadaf3SJed Brown const PetscScalar *svals = values + (V ? (bs*bs*(ii[i]+j)) : 0); 27763adadaf3SJed Brown ierr = MatSetValuesBlocked_MPIBAIJ(B,1,&row,1,&icols[j],svals,INSERT_VALUES);CHKERRQ(ierr); 27773adadaf3SJed Brown } 27783adadaf3SJed Brown } 2779aac34f13SBarry Smith } 2780aac34f13SBarry Smith 2781b8d659d7SLisandro Dalcin if (!V) { ierr = PetscFree(values);CHKERRQ(ierr); } 2782aac34f13SBarry Smith ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 2783aac34f13SBarry Smith ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 27847827cd58SJed Brown ierr = MatSetOption(B,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_TRUE);CHKERRQ(ierr); 2785aac34f13SBarry Smith PetscFunctionReturn(0); 2786aac34f13SBarry Smith } 2787aac34f13SBarry Smith 2788aac34f13SBarry Smith #undef __FUNCT__ 2789aac34f13SBarry Smith #define __FUNCT__ "MatMPIBAIJSetPreallocationCSR" 2790aac34f13SBarry Smith /*@C 2791dfb205c3SBarry Smith MatMPIBAIJSetPreallocationCSR - Allocates memory for a sparse parallel matrix in BAIJ format 2792aac34f13SBarry Smith (the default parallel PETSc format). 2793aac34f13SBarry Smith 2794aac34f13SBarry Smith Collective on MPI_Comm 2795aac34f13SBarry Smith 2796aac34f13SBarry Smith Input Parameters: 27971c4f3114SJed Brown + B - the matrix 2798dfb205c3SBarry Smith . bs - the block size 2799aac34f13SBarry Smith . i - the indices into j for the start of each local row (starts with zero) 2800aac34f13SBarry Smith . j - the column indices for each local row (starts with zero) these must be sorted for each row 2801aac34f13SBarry Smith - v - optional values in the matrix 2802aac34f13SBarry Smith 2803aac34f13SBarry Smith Level: developer 2804aac34f13SBarry Smith 28053adadaf3SJed Brown Notes: The order of the entries in values is specified by the MatOption MAT_ROW_ORIENTED. For example, C programs 28063adadaf3SJed Brown may want to use the default MAT_ROW_ORIENTED=PETSC_TRUE and use an array v[nnz][bs][bs] where the second index is 28073adadaf3SJed Brown over rows within a block and the last index is over columns within a block row. Fortran programs will likely set 28083adadaf3SJed Brown MAT_ROW_ORIENTED=PETSC_FALSE and use a Fortran array v(bs,bs,nnz) in which the first index is over rows within a 28093adadaf3SJed Brown block column and the second index is over columns within a block. 28103adadaf3SJed Brown 2811aac34f13SBarry Smith .keywords: matrix, aij, compressed row, sparse, parallel 2812aac34f13SBarry Smith 28133adadaf3SJed Brown .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatMPIBAIJSetPreallocation(), MatCreateAIJ(), MPIAIJ, MatCreateMPIBAIJWithArrays(), MPIBAIJ 2814aac34f13SBarry Smith @*/ 28157087cfbeSBarry Smith PetscErrorCode MatMPIBAIJSetPreallocationCSR(Mat B,PetscInt bs,const PetscInt i[],const PetscInt j[], const PetscScalar v[]) 2816aac34f13SBarry Smith { 28174ac538c5SBarry Smith PetscErrorCode ierr; 2818aac34f13SBarry Smith 2819aac34f13SBarry Smith PetscFunctionBegin; 28206ba663aaSJed Brown PetscValidHeaderSpecific(B,MAT_CLASSID,1); 28216ba663aaSJed Brown PetscValidType(B,1); 28226ba663aaSJed Brown PetscValidLogicalCollectiveInt(B,bs,2); 28234ac538c5SBarry Smith ierr = PetscTryMethod(B,"MatMPIBAIJSetPreallocationCSR_C",(Mat,PetscInt,const PetscInt[],const PetscInt[],const PetscScalar[]),(B,bs,i,j,v));CHKERRQ(ierr); 2824aac34f13SBarry Smith PetscFunctionReturn(0); 2825aac34f13SBarry Smith } 2826aac34f13SBarry Smith 28274a2ae208SSatish Balay #undef __FUNCT__ 2828a23d5eceSKris Buschelman #define __FUNCT__ "MatMPIBAIJSetPreallocation_MPIBAIJ" 2829b2573a8aSBarry Smith PetscErrorCode MatMPIBAIJSetPreallocation_MPIBAIJ(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt *d_nnz,PetscInt o_nz,const PetscInt *o_nnz) 2830a23d5eceSKris Buschelman { 2831a23d5eceSKris Buschelman Mat_MPIBAIJ *b; 2832dfbe8321SBarry Smith PetscErrorCode ierr; 2833535b19f3SBarry Smith PetscInt i; 2834a23d5eceSKris Buschelman 2835a23d5eceSKris Buschelman PetscFunctionBegin; 283633d57670SJed Brown ierr = MatSetBlockSize(B,PetscAbs(bs));CHKERRQ(ierr); 283726283091SBarry Smith ierr = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr); 283826283091SBarry Smith ierr = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr); 2839e02043d6SBarry Smith ierr = PetscLayoutGetBlockSize(B->rmap,&bs);CHKERRQ(ierr); 2840899cda47SBarry Smith 2841a23d5eceSKris Buschelman if (d_nnz) { 2842d0f46423SBarry Smith for (i=0; i<B->rmap->n/bs; i++) { 2843e32f2f54SBarry Smith if (d_nnz[i] < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"d_nnz cannot be less than -1: local row %D value %D",i,d_nnz[i]); 2844a23d5eceSKris Buschelman } 2845a23d5eceSKris Buschelman } 2846a23d5eceSKris Buschelman if (o_nnz) { 2847d0f46423SBarry Smith for (i=0; i<B->rmap->n/bs; i++) { 2848e32f2f54SBarry Smith if (o_nnz[i] < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"o_nnz cannot be less than -1: local row %D value %D",i,o_nnz[i]); 2849a23d5eceSKris Buschelman } 2850a23d5eceSKris Buschelman } 2851a23d5eceSKris Buschelman 2852a23d5eceSKris Buschelman b = (Mat_MPIBAIJ*)B->data; 2853a23d5eceSKris Buschelman b->bs2 = bs*bs; 2854d0f46423SBarry Smith b->mbs = B->rmap->n/bs; 2855d0f46423SBarry Smith b->nbs = B->cmap->n/bs; 2856d0f46423SBarry Smith b->Mbs = B->rmap->N/bs; 2857d0f46423SBarry Smith b->Nbs = B->cmap->N/bs; 2858a23d5eceSKris Buschelman 2859a23d5eceSKris Buschelman for (i=0; i<=b->size; i++) { 2860d0f46423SBarry Smith b->rangebs[i] = B->rmap->range[i]/bs; 2861a23d5eceSKris Buschelman } 2862d0f46423SBarry Smith b->rstartbs = B->rmap->rstart/bs; 2863d0f46423SBarry Smith b->rendbs = B->rmap->rend/bs; 2864d0f46423SBarry Smith b->cstartbs = B->cmap->rstart/bs; 2865d0f46423SBarry Smith b->cendbs = B->cmap->rend/bs; 2866a23d5eceSKris Buschelman 2867526dfc15SBarry Smith if (!B->preallocated) { 2868f69a0ea3SMatthew Knepley ierr = MatCreate(PETSC_COMM_SELF,&b->A);CHKERRQ(ierr); 2869d0f46423SBarry Smith ierr = MatSetSizes(b->A,B->rmap->n,B->cmap->n,B->rmap->n,B->cmap->n);CHKERRQ(ierr); 28709c097c71SKris Buschelman ierr = MatSetType(b->A,MATSEQBAIJ);CHKERRQ(ierr); 28713bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)B,(PetscObject)b->A);CHKERRQ(ierr); 2872f69a0ea3SMatthew Knepley ierr = MatCreate(PETSC_COMM_SELF,&b->B);CHKERRQ(ierr); 2873d0f46423SBarry Smith ierr = MatSetSizes(b->B,B->rmap->n,B->cmap->N,B->rmap->n,B->cmap->N);CHKERRQ(ierr); 28749c097c71SKris Buschelman ierr = MatSetType(b->B,MATSEQBAIJ);CHKERRQ(ierr); 28753bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)B,(PetscObject)b->B);CHKERRQ(ierr); 2876ce94432eSBarry Smith ierr = MatStashCreate_Private(PetscObjectComm((PetscObject)B),bs,&B->bstash);CHKERRQ(ierr); 2877526dfc15SBarry Smith } 2878a23d5eceSKris Buschelman 2879526dfc15SBarry Smith ierr = MatSeqBAIJSetPreallocation(b->A,bs,d_nz,d_nnz);CHKERRQ(ierr); 2880526dfc15SBarry Smith ierr = MatSeqBAIJSetPreallocation(b->B,bs,o_nz,o_nnz);CHKERRQ(ierr); 2881526dfc15SBarry Smith B->preallocated = PETSC_TRUE; 2882a23d5eceSKris Buschelman PetscFunctionReturn(0); 2883a23d5eceSKris Buschelman } 2884a23d5eceSKris Buschelman 28857087cfbeSBarry Smith extern PetscErrorCode MatDiagonalScaleLocal_MPIBAIJ(Mat,Vec); 28867087cfbeSBarry Smith extern PetscErrorCode MatSetHashTableFactor_MPIBAIJ(Mat,PetscReal); 28875bf65638SKris Buschelman 288882094794SBarry Smith #undef __FUNCT__ 288982094794SBarry Smith #define __FUNCT__ "MatConvert_MPIBAIJ_MPIAdj" 28908cc058d9SJed Brown PETSC_EXTERN PetscErrorCode MatConvert_MPIBAIJ_MPIAdj(Mat B, MatType newtype,MatReuse reuse,Mat *adj) 289182094794SBarry Smith { 289282094794SBarry Smith Mat_MPIBAIJ *b = (Mat_MPIBAIJ*)B->data; 289382094794SBarry Smith PetscErrorCode ierr; 289482094794SBarry Smith Mat_SeqBAIJ *d = (Mat_SeqBAIJ*) b->A->data,*o = (Mat_SeqBAIJ*) b->B->data; 289582094794SBarry Smith PetscInt M = B->rmap->n/B->rmap->bs,i,*ii,*jj,cnt,j,k,rstart = B->rmap->rstart/B->rmap->bs; 289682094794SBarry Smith const PetscInt *id = d->i, *jd = d->j, *io = o->i, *jo = o->j, *garray = b->garray; 289782094794SBarry Smith 289882094794SBarry Smith PetscFunctionBegin; 2899785e854fSJed Brown ierr = PetscMalloc1((M+1),&ii);CHKERRQ(ierr); 290082094794SBarry Smith ii[0] = 0; 290182094794SBarry Smith for (i=0; i<M; i++) { 2902e32f2f54SBarry Smith if ((id[i+1] - id[i]) < 0) SETERRQ3(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Indices wrong %D %D %D",i,id[i],id[i+1]); 2903e32f2f54SBarry Smith if ((io[i+1] - io[i]) < 0) SETERRQ3(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Indices wrong %D %D %D",i,io[i],io[i+1]); 290482094794SBarry Smith ii[i+1] = ii[i] + id[i+1] - id[i] + io[i+1] - io[i]; 29055ee9ba1cSJed Brown /* remove one from count of matrix has diagonal */ 29065ee9ba1cSJed Brown for (j=id[i]; j<id[i+1]; j++) { 29075ee9ba1cSJed Brown if (jd[j] == i) {ii[i+1]--;break;} 29085ee9ba1cSJed Brown } 290982094794SBarry Smith } 2910785e854fSJed Brown ierr = PetscMalloc1(ii[M],&jj);CHKERRQ(ierr); 291182094794SBarry Smith cnt = 0; 291282094794SBarry Smith for (i=0; i<M; i++) { 291382094794SBarry Smith for (j=io[i]; j<io[i+1]; j++) { 291482094794SBarry Smith if (garray[jo[j]] > rstart) break; 291582094794SBarry Smith jj[cnt++] = garray[jo[j]]; 291682094794SBarry Smith } 291782094794SBarry Smith for (k=id[i]; k<id[i+1]; k++) { 29185ee9ba1cSJed Brown if (jd[k] != i) { 291982094794SBarry Smith jj[cnt++] = rstart + jd[k]; 292082094794SBarry Smith } 29215ee9ba1cSJed Brown } 292282094794SBarry Smith for (; j<io[i+1]; j++) { 292382094794SBarry Smith jj[cnt++] = garray[jo[j]]; 292482094794SBarry Smith } 292582094794SBarry Smith } 2926ce94432eSBarry Smith ierr = MatCreateMPIAdj(PetscObjectComm((PetscObject)B),M,B->cmap->N/B->rmap->bs,ii,jj,NULL,adj);CHKERRQ(ierr); 292782094794SBarry Smith PetscFunctionReturn(0); 292882094794SBarry Smith } 292982094794SBarry Smith 2930c6db04a5SJed Brown #include <../src/mat/impls/aij/mpi/mpiaij.h> 293162471d69SBarry Smith 29328cc058d9SJed Brown PETSC_EXTERN PetscErrorCode MatConvert_SeqBAIJ_SeqAIJ(Mat,MatType,MatReuse,Mat*); 2933b2573a8aSBarry Smith 293462471d69SBarry Smith #undef __FUNCT__ 293562471d69SBarry Smith #define __FUNCT__ "MatConvert_MPIBAIJ_MPIAIJ" 29368cc058d9SJed Brown PETSC_EXTERN PetscErrorCode MatConvert_MPIBAIJ_MPIAIJ(Mat A,MatType newtype,MatReuse reuse,Mat *newmat) 293762471d69SBarry Smith { 293862471d69SBarry Smith PetscErrorCode ierr; 293962471d69SBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 294062471d69SBarry Smith Mat B; 294185a69837SSatish Balay Mat_MPIAIJ *b; 294262471d69SBarry Smith 294362471d69SBarry Smith PetscFunctionBegin; 2944ce94432eSBarry Smith if (!A->assembled) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_SUP,"Matrix must be assembled"); 294562471d69SBarry Smith 2946ce94432eSBarry Smith ierr = MatCreate(PetscObjectComm((PetscObject)A),&B);CHKERRQ(ierr); 294762471d69SBarry Smith ierr = MatSetSizes(B,A->rmap->n,A->cmap->n,A->rmap->N,A->cmap->N);CHKERRQ(ierr); 29486d0a4a0eSHong Zhang ierr = MatSetType(B,MATMPIAIJ);CHKERRQ(ierr); 29490298fd71SBarry Smith ierr = MatSeqAIJSetPreallocation(B,0,NULL);CHKERRQ(ierr); 29500298fd71SBarry Smith ierr = MatMPIAIJSetPreallocation(B,0,NULL,0,NULL);CHKERRQ(ierr); 295162471d69SBarry Smith b = (Mat_MPIAIJ*) B->data; 295262471d69SBarry Smith 29536bf464f9SBarry Smith ierr = MatDestroy(&b->A);CHKERRQ(ierr); 29546bf464f9SBarry Smith ierr = MatDestroy(&b->B);CHKERRQ(ierr); 2955ab9863d7SBarry Smith ierr = MatDisAssemble_MPIBAIJ(A);CHKERRQ(ierr); 295662471d69SBarry Smith ierr = MatConvert_SeqBAIJ_SeqAIJ(a->A, MATSEQAIJ, MAT_INITIAL_MATRIX, &b->A);CHKERRQ(ierr); 295762471d69SBarry Smith ierr = MatConvert_SeqBAIJ_SeqAIJ(a->B, MATSEQAIJ, MAT_INITIAL_MATRIX, &b->B);CHKERRQ(ierr); 295862471d69SBarry Smith ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 295962471d69SBarry Smith ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 29606a719282SBarry Smith ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 29616a719282SBarry Smith ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 296262471d69SBarry Smith if (reuse == MAT_REUSE_MATRIX) { 296362471d69SBarry Smith ierr = MatHeaderReplace(A,B);CHKERRQ(ierr); 296462471d69SBarry Smith } else { 296562471d69SBarry Smith *newmat = B; 296662471d69SBarry Smith } 296762471d69SBarry Smith PetscFunctionReturn(0); 296862471d69SBarry Smith } 296962471d69SBarry Smith 2970450b117fSShri Abhyankar #if defined(PETSC_HAVE_MUMPS) 29718cc058d9SJed Brown PETSC_EXTERN PetscErrorCode MatGetFactor_baij_mumps(Mat,MatFactorType,Mat*); 2972450b117fSShri Abhyankar #endif 2973450b117fSShri Abhyankar 29740bad9183SKris Buschelman /*MC 2975fafad747SKris Buschelman MATMPIBAIJ - MATMPIBAIJ = "mpibaij" - A matrix type to be used for distributed block sparse matrices. 29760bad9183SKris Buschelman 29770bad9183SKris Buschelman Options Database Keys: 29788c07d4e3SBarry Smith + -mat_type mpibaij - sets the matrix type to "mpibaij" during a call to MatSetFromOptions() 29798c07d4e3SBarry Smith . -mat_block_size <bs> - set the blocksize used to store the matrix 29808c07d4e3SBarry Smith - -mat_use_hash_table <fact> 29810bad9183SKris Buschelman 29820bad9183SKris Buschelman Level: beginner 29830bad9183SKris Buschelman 29840bad9183SKris Buschelman .seealso: MatCreateMPIBAIJ 29850bad9183SKris Buschelman M*/ 29860bad9183SKris Buschelman 29878cc058d9SJed Brown PETSC_EXTERN PetscErrorCode MatConvert_MPIBAIJ_MPIBSTRM(Mat,MatType,MatReuse,Mat*); 2988c0cdd4a1SDahai Guo 2989a23d5eceSKris Buschelman #undef __FUNCT__ 29904a2ae208SSatish Balay #define __FUNCT__ "MatCreate_MPIBAIJ" 29918cc058d9SJed Brown PETSC_EXTERN PetscErrorCode MatCreate_MPIBAIJ(Mat B) 2992273d9f13SBarry Smith { 2993273d9f13SBarry Smith Mat_MPIBAIJ *b; 2994dfbe8321SBarry Smith PetscErrorCode ierr; 2995ace3abfcSBarry Smith PetscBool flg; 2996273d9f13SBarry Smith 2997273d9f13SBarry Smith PetscFunctionBegin; 2998b00a9115SJed Brown ierr = PetscNewLog(B,&b);CHKERRQ(ierr); 299982502324SSatish Balay B->data = (void*)b; 300082502324SSatish Balay 3001273d9f13SBarry Smith ierr = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr); 3002273d9f13SBarry Smith B->assembled = PETSC_FALSE; 3003273d9f13SBarry Smith 3004273d9f13SBarry Smith B->insertmode = NOT_SET_VALUES; 3005ce94432eSBarry Smith ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)B),&b->rank);CHKERRQ(ierr); 3006ce94432eSBarry Smith ierr = MPI_Comm_size(PetscObjectComm((PetscObject)B),&b->size);CHKERRQ(ierr); 3007273d9f13SBarry Smith 3008273d9f13SBarry Smith /* build local table of row and column ownerships */ 3009785e854fSJed Brown ierr = PetscMalloc1((b->size+1),&b->rangebs);CHKERRQ(ierr); 3010273d9f13SBarry Smith 3011273d9f13SBarry Smith /* build cache for off array entries formed */ 3012ce94432eSBarry Smith ierr = MatStashCreate_Private(PetscObjectComm((PetscObject)B),1,&B->stash);CHKERRQ(ierr); 301326fbe8dcSKarl Rupp 3014273d9f13SBarry Smith b->donotstash = PETSC_FALSE; 30150298fd71SBarry Smith b->colmap = NULL; 30160298fd71SBarry Smith b->garray = NULL; 3017273d9f13SBarry Smith b->roworiented = PETSC_TRUE; 3018273d9f13SBarry Smith 3019273d9f13SBarry Smith /* stuff used in block assembly */ 3020273d9f13SBarry Smith b->barray = 0; 3021273d9f13SBarry Smith 3022273d9f13SBarry Smith /* stuff used for matrix vector multiply */ 3023273d9f13SBarry Smith b->lvec = 0; 3024273d9f13SBarry Smith b->Mvctx = 0; 3025273d9f13SBarry Smith 3026273d9f13SBarry Smith /* stuff for MatGetRow() */ 3027273d9f13SBarry Smith b->rowindices = 0; 3028273d9f13SBarry Smith b->rowvalues = 0; 3029273d9f13SBarry Smith b->getrowactive = PETSC_FALSE; 3030273d9f13SBarry Smith 3031273d9f13SBarry Smith /* hash table stuff */ 3032273d9f13SBarry Smith b->ht = 0; 3033273d9f13SBarry Smith b->hd = 0; 3034273d9f13SBarry Smith b->ht_size = 0; 3035273d9f13SBarry Smith b->ht_flag = PETSC_FALSE; 3036273d9f13SBarry Smith b->ht_fact = 0; 3037273d9f13SBarry Smith b->ht_total_ct = 0; 3038273d9f13SBarry Smith b->ht_insert_ct = 0; 3039273d9f13SBarry Smith 30407a868f3eSHong Zhang /* stuff for MatGetSubMatrices_MPIBAIJ_local() */ 30417a868f3eSHong Zhang b->ijonly = PETSC_FALSE; 30427a868f3eSHong Zhang 3043ce94432eSBarry Smith ierr = PetscOptionsBegin(PetscObjectComm((PetscObject)B),NULL,"Options for loading MPIBAIJ matrix 1","Mat");CHKERRQ(ierr); 30440298fd71SBarry Smith ierr = PetscOptionsBool("-mat_use_hash_table","Use hash table to save memory in constructing matrix","MatSetOption",PETSC_FALSE,&flg,NULL);CHKERRQ(ierr); 3045273d9f13SBarry Smith if (flg) { 3046f6275e2eSBarry Smith PetscReal fact = 1.39; 30474e0d8c25SBarry Smith ierr = MatSetOption(B,MAT_USE_HASH_TABLE,PETSC_TRUE);CHKERRQ(ierr); 30480298fd71SBarry Smith ierr = PetscOptionsReal("-mat_use_hash_table","Use hash table factor","MatMPIBAIJSetHashTableFactor",fact,&fact,NULL);CHKERRQ(ierr); 3049273d9f13SBarry Smith if (fact <= 1.0) fact = 1.39; 3050273d9f13SBarry Smith ierr = MatMPIBAIJSetHashTableFactor(B,fact);CHKERRQ(ierr); 30511e2582c4SBarry Smith ierr = PetscInfo1(B,"Hash table Factor used %5.2f\n",fact);CHKERRQ(ierr); 3052273d9f13SBarry Smith } 30538c07d4e3SBarry Smith ierr = PetscOptionsEnd();CHKERRQ(ierr); 30548c07d4e3SBarry Smith 3055450b117fSShri Abhyankar #if defined(PETSC_HAVE_MUMPS) 3056bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatGetFactor_mumps_C",MatGetFactor_baij_mumps);CHKERRQ(ierr); 3057450b117fSShri Abhyankar #endif 3058bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpibaij_mpiadj_C",MatConvert_MPIBAIJ_MPIAdj);CHKERRQ(ierr); 3059bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpibaij_mpiaij_C",MatConvert_MPIBAIJ_MPIAIJ);CHKERRQ(ierr); 3060bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpibaij_mpisbaij_C",MatConvert_MPIBAIJ_MPISBAIJ);CHKERRQ(ierr); 3061bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatStoreValues_C",MatStoreValues_MPIBAIJ);CHKERRQ(ierr); 3062bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatRetrieveValues_C",MatRetrieveValues_MPIBAIJ);CHKERRQ(ierr); 3063bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatGetDiagonalBlock_C",MatGetDiagonalBlock_MPIBAIJ);CHKERRQ(ierr); 3064bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatMPIBAIJSetPreallocation_C",MatMPIBAIJSetPreallocation_MPIBAIJ);CHKERRQ(ierr); 3065bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatMPIBAIJSetPreallocationCSR_C",MatMPIBAIJSetPreallocationCSR_MPIBAIJ);CHKERRQ(ierr); 3066bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatDiagonalScaleLocal_C",MatDiagonalScaleLocal_MPIBAIJ);CHKERRQ(ierr); 3067bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatSetHashTableFactor_C",MatSetHashTableFactor_MPIBAIJ);CHKERRQ(ierr); 3068bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpibaij_mpibstrm_C",MatConvert_MPIBAIJ_MPIBSTRM);CHKERRQ(ierr); 306917667f90SBarry Smith ierr = PetscObjectChangeTypeName((PetscObject)B,MATMPIBAIJ);CHKERRQ(ierr); 3070273d9f13SBarry Smith PetscFunctionReturn(0); 3071273d9f13SBarry Smith } 3072273d9f13SBarry Smith 3073209238afSKris Buschelman /*MC 3074002d173eSKris Buschelman MATBAIJ - MATBAIJ = "baij" - A matrix type to be used for block sparse matrices. 3075209238afSKris Buschelman 3076209238afSKris Buschelman This matrix type is identical to MATSEQBAIJ when constructed with a single process communicator, 3077209238afSKris Buschelman and MATMPIBAIJ otherwise. 3078209238afSKris Buschelman 3079209238afSKris Buschelman Options Database Keys: 3080209238afSKris Buschelman . -mat_type baij - sets the matrix type to "baij" during a call to MatSetFromOptions() 3081209238afSKris Buschelman 3082209238afSKris Buschelman Level: beginner 3083209238afSKris Buschelman 308469b1f4b7SBarry Smith .seealso: MatCreateBAIJ(),MATSEQBAIJ,MATMPIBAIJ, MatMPIBAIJSetPreallocation(), MatMPIBAIJSetPreallocationCSR() 3085209238afSKris Buschelman M*/ 3086209238afSKris Buschelman 30874a2ae208SSatish Balay #undef __FUNCT__ 30884a2ae208SSatish Balay #define __FUNCT__ "MatMPIBAIJSetPreallocation" 3089273d9f13SBarry Smith /*@C 3090aac34f13SBarry Smith MatMPIBAIJSetPreallocation - Allocates memory for a sparse parallel matrix in block AIJ format 3091273d9f13SBarry Smith (block compressed row). For good matrix assembly performance 3092273d9f13SBarry Smith the user should preallocate the matrix storage by setting the parameters 3093273d9f13SBarry Smith d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 3094273d9f13SBarry Smith performance can be increased by more than a factor of 50. 3095273d9f13SBarry Smith 3096273d9f13SBarry Smith Collective on Mat 3097273d9f13SBarry Smith 3098273d9f13SBarry Smith Input Parameters: 30991c4f3114SJed Brown + B - the matrix 3100e8271787SHong Zhang . bs - size of block 3101273d9f13SBarry Smith . d_nz - number of block nonzeros per block row in diagonal portion of local 3102273d9f13SBarry Smith submatrix (same for all local rows) 3103273d9f13SBarry Smith . d_nnz - array containing the number of block nonzeros in the various block rows 3104273d9f13SBarry Smith of the in diagonal portion of the local (possibly different for each block 31050298fd71SBarry Smith row) or NULL. If you plan to factor the matrix you must leave room for the diagonal entry and 310695742e49SBarry Smith set it even if it is zero. 3107273d9f13SBarry Smith . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 3108273d9f13SBarry Smith submatrix (same for all local rows). 3109273d9f13SBarry Smith - o_nnz - array containing the number of nonzeros in the various block rows of the 3110273d9f13SBarry Smith off-diagonal portion of the local submatrix (possibly different for 31110298fd71SBarry Smith each block row) or NULL. 3112273d9f13SBarry Smith 311349a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 3114273d9f13SBarry Smith 3115273d9f13SBarry Smith Options Database Keys: 31168c07d4e3SBarry Smith + -mat_block_size - size of the blocks to use 31178c07d4e3SBarry Smith - -mat_use_hash_table <fact> 3118273d9f13SBarry Smith 3119273d9f13SBarry Smith Notes: 3120273d9f13SBarry Smith If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one processor 3121273d9f13SBarry Smith than it must be used on all processors that share the object for that argument. 3122273d9f13SBarry Smith 3123273d9f13SBarry Smith Storage Information: 3124273d9f13SBarry Smith For a square global matrix we define each processor's diagonal portion 3125273d9f13SBarry Smith to be its local rows and the corresponding columns (a square submatrix); 3126273d9f13SBarry Smith each processor's off-diagonal portion encompasses the remainder of the 3127273d9f13SBarry Smith local matrix (a rectangular submatrix). 3128273d9f13SBarry Smith 3129273d9f13SBarry Smith The user can specify preallocated storage for the diagonal part of 3130273d9f13SBarry Smith the local submatrix with either d_nz or d_nnz (not both). Set 31310298fd71SBarry Smith d_nz=PETSC_DEFAULT and d_nnz=NULL for PETSc to control dynamic 3132273d9f13SBarry Smith memory allocation. Likewise, specify preallocated storage for the 3133273d9f13SBarry Smith off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 3134273d9f13SBarry Smith 3135273d9f13SBarry Smith Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 3136273d9f13SBarry Smith the figure below we depict these three local rows and all columns (0-11). 3137273d9f13SBarry Smith 3138273d9f13SBarry Smith .vb 3139273d9f13SBarry Smith 0 1 2 3 4 5 6 7 8 9 10 11 3140a4b1a0f6SJed Brown -------------------------- 3141273d9f13SBarry Smith row 3 |o o o d d d o o o o o o 3142273d9f13SBarry Smith row 4 |o o o d d d o o o o o o 3143273d9f13SBarry Smith row 5 |o o o d d d o o o o o o 3144a4b1a0f6SJed Brown -------------------------- 3145273d9f13SBarry Smith .ve 3146273d9f13SBarry Smith 3147273d9f13SBarry Smith Thus, any entries in the d locations are stored in the d (diagonal) 3148273d9f13SBarry Smith submatrix, and any entries in the o locations are stored in the 3149273d9f13SBarry Smith o (off-diagonal) submatrix. Note that the d and the o submatrices are 3150273d9f13SBarry Smith stored simply in the MATSEQBAIJ format for compressed row storage. 3151273d9f13SBarry Smith 3152273d9f13SBarry Smith Now d_nz should indicate the number of block nonzeros per row in the d matrix, 3153273d9f13SBarry Smith and o_nz should indicate the number of block nonzeros per row in the o matrix. 3154273d9f13SBarry Smith In general, for PDE problems in which most nonzeros are near the diagonal, 3155273d9f13SBarry Smith one expects d_nz >> o_nz. For large problems you MUST preallocate memory 3156273d9f13SBarry Smith or you will get TERRIBLE performance; see the users' manual chapter on 3157273d9f13SBarry Smith matrices. 3158273d9f13SBarry Smith 3159aa95bbe8SBarry Smith You can call MatGetInfo() to get information on how effective the preallocation was; 3160aa95bbe8SBarry Smith for example the fields mallocs,nz_allocated,nz_used,nz_unneeded; 3161aa95bbe8SBarry Smith You can also run with the option -info and look for messages with the string 3162aa95bbe8SBarry Smith malloc in them to see if additional memory allocation was needed. 3163aa95bbe8SBarry Smith 3164273d9f13SBarry Smith Level: intermediate 3165273d9f13SBarry Smith 3166273d9f13SBarry Smith .keywords: matrix, block, aij, compressed row, sparse, parallel 3167273d9f13SBarry Smith 3168ab978733SBarry Smith .seealso: MatCreate(), MatCreateSeqBAIJ(), MatSetValues(), MatCreateBAIJ(), MatMPIBAIJSetPreallocationCSR(), PetscSplitOwnership() 3169273d9f13SBarry Smith @*/ 31707087cfbeSBarry Smith PetscErrorCode MatMPIBAIJSetPreallocation(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[]) 3171273d9f13SBarry Smith { 31724ac538c5SBarry Smith PetscErrorCode ierr; 3173273d9f13SBarry Smith 3174273d9f13SBarry Smith PetscFunctionBegin; 31756ba663aaSJed Brown PetscValidHeaderSpecific(B,MAT_CLASSID,1); 31766ba663aaSJed Brown PetscValidType(B,1); 31776ba663aaSJed Brown PetscValidLogicalCollectiveInt(B,bs,2); 31784ac538c5SBarry Smith ierr = PetscTryMethod(B,"MatMPIBAIJSetPreallocation_C",(Mat,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[]),(B,bs,d_nz,d_nnz,o_nz,o_nnz));CHKERRQ(ierr); 3179273d9f13SBarry Smith PetscFunctionReturn(0); 3180273d9f13SBarry Smith } 3181273d9f13SBarry Smith 31824a2ae208SSatish Balay #undef __FUNCT__ 318369b1f4b7SBarry Smith #define __FUNCT__ "MatCreateBAIJ" 318479bdfe76SSatish Balay /*@C 318569b1f4b7SBarry Smith MatCreateBAIJ - Creates a sparse parallel matrix in block AIJ format 318679bdfe76SSatish Balay (block compressed row). For good matrix assembly performance 318779bdfe76SSatish Balay the user should preallocate the matrix storage by setting the parameters 318879bdfe76SSatish Balay d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 318979bdfe76SSatish Balay performance can be increased by more than a factor of 50. 319079bdfe76SSatish Balay 3191db81eaa0SLois Curfman McInnes Collective on MPI_Comm 3192db81eaa0SLois Curfman McInnes 319379bdfe76SSatish Balay Input Parameters: 3194db81eaa0SLois Curfman McInnes + comm - MPI communicator 319579bdfe76SSatish Balay . bs - size of blockk 319679bdfe76SSatish Balay . m - number of local rows (or PETSC_DECIDE to have calculated if M is given) 319792e8d321SLois Curfman McInnes This value should be the same as the local size used in creating the 319892e8d321SLois Curfman McInnes y vector for the matrix-vector product y = Ax. 319992e8d321SLois Curfman McInnes . n - number of local columns (or PETSC_DECIDE to have calculated if N is given) 320092e8d321SLois Curfman McInnes This value should be the same as the local size used in creating the 320192e8d321SLois Curfman McInnes x vector for the matrix-vector product y = Ax. 3202be79a94dSBarry Smith . M - number of global rows (or PETSC_DETERMINE to have calculated if m is given) 3203be79a94dSBarry Smith . N - number of global columns (or PETSC_DETERMINE to have calculated if n is given) 320447a75d0bSBarry Smith . d_nz - number of nonzero blocks per block row in diagonal portion of local 320579bdfe76SSatish Balay submatrix (same for all local rows) 320647a75d0bSBarry Smith . d_nnz - array containing the number of nonzero blocks in the various block rows 320792e8d321SLois Curfman McInnes of the in diagonal portion of the local (possibly different for each block 32080298fd71SBarry Smith row) or NULL. If you plan to factor the matrix you must leave room for the diagonal entry 320995742e49SBarry Smith and set it even if it is zero. 321047a75d0bSBarry Smith . o_nz - number of nonzero blocks per block row in the off-diagonal portion of local 321179bdfe76SSatish Balay submatrix (same for all local rows). 321247a75d0bSBarry Smith - o_nnz - array containing the number of nonzero blocks in the various block rows of the 321392e8d321SLois Curfman McInnes off-diagonal portion of the local submatrix (possibly different for 32140298fd71SBarry Smith each block row) or NULL. 321579bdfe76SSatish Balay 321679bdfe76SSatish Balay Output Parameter: 321779bdfe76SSatish Balay . A - the matrix 321879bdfe76SSatish Balay 3219db81eaa0SLois Curfman McInnes Options Database Keys: 32208c07d4e3SBarry Smith + -mat_block_size - size of the blocks to use 32218c07d4e3SBarry Smith - -mat_use_hash_table <fact> 32223ffaccefSLois Curfman McInnes 3223175b88e8SBarry Smith It is recommended that one use the MatCreate(), MatSetType() and/or MatSetFromOptions(), 3224ae1d86c5SBarry Smith MatXXXXSetPreallocation() paradgm instead of this routine directly. 3225175b88e8SBarry Smith [MatXXXXSetPreallocation() is, for example, MatSeqAIJSetPreallocation] 3226175b88e8SBarry Smith 3227b259b22eSLois Curfman McInnes Notes: 322849a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 322949a6f317SBarry Smith 323047a75d0bSBarry Smith A nonzero block is any block that as 1 or more nonzeros in it 323147a75d0bSBarry Smith 323279bdfe76SSatish Balay The user MUST specify either the local or global matrix dimensions 323379bdfe76SSatish Balay (possibly both). 323479bdfe76SSatish Balay 3235be79a94dSBarry Smith If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one processor 3236be79a94dSBarry Smith than it must be used on all processors that share the object for that argument. 3237be79a94dSBarry Smith 323879bdfe76SSatish Balay Storage Information: 323979bdfe76SSatish Balay For a square global matrix we define each processor's diagonal portion 324079bdfe76SSatish Balay to be its local rows and the corresponding columns (a square submatrix); 324179bdfe76SSatish Balay each processor's off-diagonal portion encompasses the remainder of the 324279bdfe76SSatish Balay local matrix (a rectangular submatrix). 324379bdfe76SSatish Balay 324479bdfe76SSatish Balay The user can specify preallocated storage for the diagonal part of 324579bdfe76SSatish Balay the local submatrix with either d_nz or d_nnz (not both). Set 32460298fd71SBarry Smith d_nz=PETSC_DEFAULT and d_nnz=NULL for PETSc to control dynamic 324779bdfe76SSatish Balay memory allocation. Likewise, specify preallocated storage for the 324879bdfe76SSatish Balay off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 324979bdfe76SSatish Balay 325079bdfe76SSatish Balay Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 325179bdfe76SSatish Balay the figure below we depict these three local rows and all columns (0-11). 325279bdfe76SSatish Balay 3253db81eaa0SLois Curfman McInnes .vb 3254db81eaa0SLois Curfman McInnes 0 1 2 3 4 5 6 7 8 9 10 11 3255a4b1a0f6SJed Brown -------------------------- 3256db81eaa0SLois Curfman McInnes row 3 |o o o d d d o o o o o o 3257db81eaa0SLois Curfman McInnes row 4 |o o o d d d o o o o o o 3258db81eaa0SLois Curfman McInnes row 5 |o o o d d d o o o o o o 3259a4b1a0f6SJed Brown -------------------------- 3260db81eaa0SLois Curfman McInnes .ve 326179bdfe76SSatish Balay 326279bdfe76SSatish Balay Thus, any entries in the d locations are stored in the d (diagonal) 326379bdfe76SSatish Balay submatrix, and any entries in the o locations are stored in the 326479bdfe76SSatish Balay o (off-diagonal) submatrix. Note that the d and the o submatrices are 326557b952d6SSatish Balay stored simply in the MATSEQBAIJ format for compressed row storage. 326679bdfe76SSatish Balay 3267d64ed03dSBarry Smith Now d_nz should indicate the number of block nonzeros per row in the d matrix, 3268d64ed03dSBarry Smith and o_nz should indicate the number of block nonzeros per row in the o matrix. 326979bdfe76SSatish Balay In general, for PDE problems in which most nonzeros are near the diagonal, 327092e8d321SLois Curfman McInnes one expects d_nz >> o_nz. For large problems you MUST preallocate memory 327192e8d321SLois Curfman McInnes or you will get TERRIBLE performance; see the users' manual chapter on 32726da5968aSLois Curfman McInnes matrices. 327379bdfe76SSatish Balay 3274027ccd11SLois Curfman McInnes Level: intermediate 3275027ccd11SLois Curfman McInnes 327692e8d321SLois Curfman McInnes .keywords: matrix, block, aij, compressed row, sparse, parallel 327779bdfe76SSatish Balay 327869b1f4b7SBarry Smith .seealso: MatCreate(), MatCreateSeqBAIJ(), MatSetValues(), MatCreateBAIJ(), MatMPIBAIJSetPreallocation(), MatMPIBAIJSetPreallocationCSR() 327979bdfe76SSatish Balay @*/ 328069b1f4b7SBarry Smith PetscErrorCode MatCreateBAIJ(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[],Mat *A) 328179bdfe76SSatish Balay { 32826849ba73SBarry Smith PetscErrorCode ierr; 3283b24ad042SBarry Smith PetscMPIInt size; 328479bdfe76SSatish Balay 3285d64ed03dSBarry Smith PetscFunctionBegin; 3286f69a0ea3SMatthew Knepley ierr = MatCreate(comm,A);CHKERRQ(ierr); 3287f69a0ea3SMatthew Knepley ierr = MatSetSizes(*A,m,n,M,N);CHKERRQ(ierr); 3288d132466eSBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 3289273d9f13SBarry Smith if (size > 1) { 3290273d9f13SBarry Smith ierr = MatSetType(*A,MATMPIBAIJ);CHKERRQ(ierr); 3291273d9f13SBarry Smith ierr = MatMPIBAIJSetPreallocation(*A,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr); 3292273d9f13SBarry Smith } else { 3293273d9f13SBarry Smith ierr = MatSetType(*A,MATSEQBAIJ);CHKERRQ(ierr); 3294273d9f13SBarry Smith ierr = MatSeqBAIJSetPreallocation(*A,bs,d_nz,d_nnz);CHKERRQ(ierr); 32953914022bSBarry Smith } 32963a40ed3dSBarry Smith PetscFunctionReturn(0); 329779bdfe76SSatish Balay } 3298026e39d0SSatish Balay 32994a2ae208SSatish Balay #undef __FUNCT__ 33004a2ae208SSatish Balay #define __FUNCT__ "MatDuplicate_MPIBAIJ" 33016849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIBAIJ(Mat matin,MatDuplicateOption cpvalues,Mat *newmat) 33020ac07820SSatish Balay { 33030ac07820SSatish Balay Mat mat; 33040ac07820SSatish Balay Mat_MPIBAIJ *a,*oldmat = (Mat_MPIBAIJ*)matin->data; 3305dfbe8321SBarry Smith PetscErrorCode ierr; 3306b24ad042SBarry Smith PetscInt len=0; 33070ac07820SSatish Balay 3308d64ed03dSBarry Smith PetscFunctionBegin; 33090ac07820SSatish Balay *newmat = 0; 3310ce94432eSBarry Smith ierr = MatCreate(PetscObjectComm((PetscObject)matin),&mat);CHKERRQ(ierr); 3311d0f46423SBarry Smith ierr = MatSetSizes(mat,matin->rmap->n,matin->cmap->n,matin->rmap->N,matin->cmap->N);CHKERRQ(ierr); 33127adad957SLisandro Dalcin ierr = MatSetType(mat,((PetscObject)matin)->type_name);CHKERRQ(ierr); 33131d5dac46SHong Zhang ierr = PetscMemcpy(mat->ops,matin->ops,sizeof(struct _MatOps));CHKERRQ(ierr); 33147fff6886SHong Zhang 3315d5f3da31SBarry Smith mat->factortype = matin->factortype; 3316273d9f13SBarry Smith mat->preallocated = PETSC_TRUE; 33170ac07820SSatish Balay mat->assembled = PETSC_TRUE; 33187fff6886SHong Zhang mat->insertmode = NOT_SET_VALUES; 33197fff6886SHong Zhang 3320273d9f13SBarry Smith a = (Mat_MPIBAIJ*)mat->data; 3321d0f46423SBarry Smith mat->rmap->bs = matin->rmap->bs; 33220ac07820SSatish Balay a->bs2 = oldmat->bs2; 33230ac07820SSatish Balay a->mbs = oldmat->mbs; 33240ac07820SSatish Balay a->nbs = oldmat->nbs; 33250ac07820SSatish Balay a->Mbs = oldmat->Mbs; 33260ac07820SSatish Balay a->Nbs = oldmat->Nbs; 33270ac07820SSatish Balay 33281e1e43feSBarry Smith ierr = PetscLayoutReference(matin->rmap,&mat->rmap);CHKERRQ(ierr); 33291e1e43feSBarry Smith ierr = PetscLayoutReference(matin->cmap,&mat->cmap);CHKERRQ(ierr); 3330899cda47SBarry Smith 33310ac07820SSatish Balay a->size = oldmat->size; 33320ac07820SSatish Balay a->rank = oldmat->rank; 3333aef5e8e0SSatish Balay a->donotstash = oldmat->donotstash; 3334aef5e8e0SSatish Balay a->roworiented = oldmat->roworiented; 3335aef5e8e0SSatish Balay a->rowindices = 0; 33360ac07820SSatish Balay a->rowvalues = 0; 33370ac07820SSatish Balay a->getrowactive = PETSC_FALSE; 333830793edcSSatish Balay a->barray = 0; 3339899cda47SBarry Smith a->rstartbs = oldmat->rstartbs; 3340899cda47SBarry Smith a->rendbs = oldmat->rendbs; 3341899cda47SBarry Smith a->cstartbs = oldmat->cstartbs; 3342899cda47SBarry Smith a->cendbs = oldmat->cendbs; 33430ac07820SSatish Balay 3344133cdb44SSatish Balay /* hash table stuff */ 3345133cdb44SSatish Balay a->ht = 0; 3346133cdb44SSatish Balay a->hd = 0; 3347133cdb44SSatish Balay a->ht_size = 0; 3348133cdb44SSatish Balay a->ht_flag = oldmat->ht_flag; 334925fdafccSSatish Balay a->ht_fact = oldmat->ht_fact; 3350133cdb44SSatish Balay a->ht_total_ct = 0; 3351133cdb44SSatish Balay a->ht_insert_ct = 0; 3352133cdb44SSatish Balay 3353899cda47SBarry Smith ierr = PetscMemcpy(a->rangebs,oldmat->rangebs,(a->size+1)*sizeof(PetscInt));CHKERRQ(ierr); 33540ac07820SSatish Balay if (oldmat->colmap) { 3355aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 33560f5bd95cSBarry Smith ierr = PetscTableCreateCopy(oldmat->colmap,&a->colmap);CHKERRQ(ierr); 335748e59246SSatish Balay #else 3358785e854fSJed Brown ierr = PetscMalloc1((a->Nbs),&a->colmap);CHKERRQ(ierr); 33593bb1ff40SBarry Smith ierr = PetscLogObjectMemory((PetscObject)mat,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr); 3360b24ad042SBarry Smith ierr = PetscMemcpy(a->colmap,oldmat->colmap,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr); 336148e59246SSatish Balay #endif 33620ac07820SSatish Balay } else a->colmap = 0; 33634beb1cfeSHong Zhang 33640ac07820SSatish Balay if (oldmat->garray && (len = ((Mat_SeqBAIJ*)(oldmat->B->data))->nbs)) { 3365785e854fSJed Brown ierr = PetscMalloc1(len,&a->garray);CHKERRQ(ierr); 33663bb1ff40SBarry Smith ierr = PetscLogObjectMemory((PetscObject)mat,len*sizeof(PetscInt));CHKERRQ(ierr); 3367b24ad042SBarry Smith ierr = PetscMemcpy(a->garray,oldmat->garray,len*sizeof(PetscInt));CHKERRQ(ierr); 33680ac07820SSatish Balay } else a->garray = 0; 33690ac07820SSatish Balay 3370ce94432eSBarry Smith ierr = MatStashCreate_Private(PetscObjectComm((PetscObject)matin),matin->rmap->bs,&mat->bstash);CHKERRQ(ierr); 33710ac07820SSatish Balay ierr = VecDuplicate(oldmat->lvec,&a->lvec);CHKERRQ(ierr); 33723bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->lvec);CHKERRQ(ierr); 33730ac07820SSatish Balay ierr = VecScatterCopy(oldmat->Mvctx,&a->Mvctx);CHKERRQ(ierr); 33743bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->Mvctx);CHKERRQ(ierr); 33757fff6886SHong Zhang 33762e8a6d31SBarry Smith ierr = MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr); 33773bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->A);CHKERRQ(ierr); 33782e8a6d31SBarry Smith ierr = MatDuplicate(oldmat->B,cpvalues,&a->B);CHKERRQ(ierr); 33793bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->B);CHKERRQ(ierr); 3380140e18c1SBarry Smith ierr = PetscFunctionListDuplicate(((PetscObject)matin)->qlist,&((PetscObject)mat)->qlist);CHKERRQ(ierr); 33810ac07820SSatish Balay *newmat = mat; 33823a40ed3dSBarry Smith PetscFunctionReturn(0); 33830ac07820SSatish Balay } 338457b952d6SSatish Balay 33854a2ae208SSatish Balay #undef __FUNCT__ 33865bba2384SShri Abhyankar #define __FUNCT__ "MatLoad_MPIBAIJ" 3387112444f4SShri Abhyankar PetscErrorCode MatLoad_MPIBAIJ(Mat newmat,PetscViewer viewer) 33884683f7a4SShri Abhyankar { 33894683f7a4SShri Abhyankar PetscErrorCode ierr; 33904683f7a4SShri Abhyankar int fd; 33914683f7a4SShri Abhyankar PetscInt i,nz,j,rstart,rend; 33924683f7a4SShri Abhyankar PetscScalar *vals,*buf; 3393ce94432eSBarry Smith MPI_Comm comm; 33944683f7a4SShri Abhyankar MPI_Status status; 33954683f7a4SShri Abhyankar PetscMPIInt rank,size,maxnz; 33964683f7a4SShri Abhyankar PetscInt header[4],*rowlengths = 0,M,N,m,*rowners,*cols; 33970298fd71SBarry Smith PetscInt *locrowlens = NULL,*procsnz = NULL,*browners = NULL; 33983059b6faSBarry Smith PetscInt jj,*mycols,*ibuf,bs = newmat->rmap->bs,Mbs,mbs,extra_rows,mmax; 33994683f7a4SShri Abhyankar PetscMPIInt tag = ((PetscObject)viewer)->tag; 34000298fd71SBarry Smith PetscInt *dlens = NULL,*odlens = NULL,*mask = NULL,*masked1 = NULL,*masked2 = NULL,rowcount,odcount; 34014683f7a4SShri Abhyankar PetscInt dcount,kmax,k,nzcount,tmp,mend,sizesset=1,grows,gcols; 34024683f7a4SShri Abhyankar 34034683f7a4SShri Abhyankar PetscFunctionBegin; 3404ce94432eSBarry Smith ierr = PetscObjectGetComm((PetscObject)viewer,&comm);CHKERRQ(ierr); 34050298fd71SBarry Smith ierr = PetscOptionsBegin(comm,NULL,"Options for loading MPIBAIJ matrix 2","Mat");CHKERRQ(ierr); 34060298fd71SBarry Smith ierr = PetscOptionsInt("-matload_block_size","Set the blocksize used to store the matrix","MatLoad",bs,&bs,NULL);CHKERRQ(ierr); 34074683f7a4SShri Abhyankar ierr = PetscOptionsEnd();CHKERRQ(ierr); 34083059b6faSBarry Smith if (bs < 0) bs = 1; 34094683f7a4SShri Abhyankar 34104683f7a4SShri Abhyankar ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 34114683f7a4SShri Abhyankar ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 34124683f7a4SShri Abhyankar if (!rank) { 34134683f7a4SShri Abhyankar ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr); 34144683f7a4SShri Abhyankar ierr = PetscBinaryRead(fd,(char*)header,4,PETSC_INT);CHKERRQ(ierr); 34154683f7a4SShri Abhyankar if (header[0] != MAT_FILE_CLASSID) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"not matrix object"); 34164683f7a4SShri Abhyankar } 34174683f7a4SShri Abhyankar 34184683f7a4SShri Abhyankar if (newmat->rmap->n < 0 && newmat->rmap->N < 0 && newmat->cmap->n < 0 && newmat->cmap->N < 0) sizesset = 0; 34194683f7a4SShri Abhyankar 34204683f7a4SShri Abhyankar ierr = MPI_Bcast(header+1,3,MPIU_INT,0,comm);CHKERRQ(ierr); 34214683f7a4SShri Abhyankar M = header[1]; N = header[2]; 34224683f7a4SShri Abhyankar 34234683f7a4SShri Abhyankar /* If global rows/cols are set to PETSC_DECIDE, set it to the sizes given in the file */ 34244683f7a4SShri Abhyankar if (sizesset && newmat->rmap->N < 0) newmat->rmap->N = M; 34254683f7a4SShri Abhyankar if (sizesset && newmat->cmap->N < 0) newmat->cmap->N = N; 34264683f7a4SShri Abhyankar 34274683f7a4SShri Abhyankar /* If global sizes are set, check if they are consistent with that given in the file */ 34284683f7a4SShri Abhyankar if (sizesset) { 34294683f7a4SShri Abhyankar ierr = MatGetSize(newmat,&grows,&gcols);CHKERRQ(ierr); 34304683f7a4SShri Abhyankar } 3431abd38a8fSBarry Smith if (sizesset && newmat->rmap->N != grows) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED, "Inconsistent # of rows:Matrix in file has (%d) and input matrix has (%d)",M,grows); 3432abd38a8fSBarry Smith if (sizesset && newmat->cmap->N != gcols) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED, "Inconsistent # of cols:Matrix in file has (%d) and input matrix has (%d)",N,gcols); 34334683f7a4SShri Abhyankar 3434ce94432eSBarry Smith if (M != N) SETERRQ(PetscObjectComm((PetscObject)viewer),PETSC_ERR_SUP,"Can only do square matrices"); 34354683f7a4SShri Abhyankar 34364683f7a4SShri Abhyankar /* 34374683f7a4SShri Abhyankar This code adds extra rows to make sure the number of rows is 34384683f7a4SShri Abhyankar divisible by the blocksize 34394683f7a4SShri Abhyankar */ 34404683f7a4SShri Abhyankar Mbs = M/bs; 34414683f7a4SShri Abhyankar extra_rows = bs - M + bs*Mbs; 34424683f7a4SShri Abhyankar if (extra_rows == bs) extra_rows = 0; 34434683f7a4SShri Abhyankar else Mbs++; 34444683f7a4SShri Abhyankar if (extra_rows && !rank) { 34454683f7a4SShri Abhyankar ierr = PetscInfo(viewer,"Padding loaded matrix to match blocksize\n");CHKERRQ(ierr); 34464683f7a4SShri Abhyankar } 34474683f7a4SShri Abhyankar 34484683f7a4SShri Abhyankar /* determine ownership of all rows */ 34494683f7a4SShri Abhyankar if (newmat->rmap->n < 0) { /* PETSC_DECIDE */ 34504683f7a4SShri Abhyankar mbs = Mbs/size + ((Mbs % size) > rank); 34514683f7a4SShri Abhyankar m = mbs*bs; 34524683f7a4SShri Abhyankar } else { /* User set */ 34534683f7a4SShri Abhyankar m = newmat->rmap->n; 34544683f7a4SShri Abhyankar mbs = m/bs; 34554683f7a4SShri Abhyankar } 3456dcca6d9dSJed Brown ierr = PetscMalloc2(size+1,&rowners,size+1,&browners);CHKERRQ(ierr); 34574683f7a4SShri Abhyankar ierr = MPI_Allgather(&mbs,1,MPIU_INT,rowners+1,1,MPIU_INT,comm);CHKERRQ(ierr); 34584683f7a4SShri Abhyankar 34594683f7a4SShri Abhyankar /* process 0 needs enough room for process with most rows */ 34604683f7a4SShri Abhyankar if (!rank) { 34614683f7a4SShri Abhyankar mmax = rowners[1]; 34621251c579SMatthew G Knepley for (i=2; i<=size; i++) { 34634683f7a4SShri Abhyankar mmax = PetscMax(mmax,rowners[i]); 34644683f7a4SShri Abhyankar } 34654683f7a4SShri Abhyankar mmax*=bs; 34663964eb88SJed Brown } else mmax = -1; /* unused, but compiler warns anyway */ 34674683f7a4SShri Abhyankar 34684683f7a4SShri Abhyankar rowners[0] = 0; 34694683f7a4SShri Abhyankar for (i=2; i<=size; i++) rowners[i] += rowners[i-1]; 34704683f7a4SShri Abhyankar for (i=0; i<=size; i++) browners[i] = rowners[i]*bs; 34714683f7a4SShri Abhyankar rstart = rowners[rank]; 34724683f7a4SShri Abhyankar rend = rowners[rank+1]; 34734683f7a4SShri Abhyankar 34744683f7a4SShri Abhyankar /* distribute row lengths to all processors */ 3475785e854fSJed Brown ierr = PetscMalloc1(m,&locrowlens);CHKERRQ(ierr); 34764683f7a4SShri Abhyankar if (!rank) { 34774683f7a4SShri Abhyankar mend = m; 34784683f7a4SShri Abhyankar if (size == 1) mend = mend - extra_rows; 34794683f7a4SShri Abhyankar ierr = PetscBinaryRead(fd,locrowlens,mend,PETSC_INT);CHKERRQ(ierr); 34804683f7a4SShri Abhyankar for (j=mend; j<m; j++) locrowlens[j] = 1; 3481785e854fSJed Brown ierr = PetscMalloc1(mmax,&rowlengths);CHKERRQ(ierr); 34821795a4d1SJed Brown ierr = PetscCalloc1(size,&procsnz);CHKERRQ(ierr); 34834683f7a4SShri Abhyankar for (j=0; j<m; j++) { 34844683f7a4SShri Abhyankar procsnz[0] += locrowlens[j]; 34854683f7a4SShri Abhyankar } 34864683f7a4SShri Abhyankar for (i=1; i<size; i++) { 34874683f7a4SShri Abhyankar mend = browners[i+1] - browners[i]; 34884683f7a4SShri Abhyankar if (i == size-1) mend = mend - extra_rows; 34894683f7a4SShri Abhyankar ierr = PetscBinaryRead(fd,rowlengths,mend,PETSC_INT);CHKERRQ(ierr); 34904683f7a4SShri Abhyankar for (j=mend; j<browners[i+1] - browners[i]; j++) rowlengths[j] = 1; 34914683f7a4SShri Abhyankar /* calculate the number of nonzeros on each processor */ 34924683f7a4SShri Abhyankar for (j=0; j<browners[i+1]-browners[i]; j++) { 34934683f7a4SShri Abhyankar procsnz[i] += rowlengths[j]; 34944683f7a4SShri Abhyankar } 34954683f7a4SShri Abhyankar ierr = MPI_Send(rowlengths,browners[i+1]-browners[i],MPIU_INT,i,tag,comm);CHKERRQ(ierr); 34964683f7a4SShri Abhyankar } 34974683f7a4SShri Abhyankar ierr = PetscFree(rowlengths);CHKERRQ(ierr); 34984683f7a4SShri Abhyankar } else { 34994683f7a4SShri Abhyankar ierr = MPI_Recv(locrowlens,m,MPIU_INT,0,tag,comm,&status);CHKERRQ(ierr); 35004683f7a4SShri Abhyankar } 35014683f7a4SShri Abhyankar 35024683f7a4SShri Abhyankar if (!rank) { 35034683f7a4SShri Abhyankar /* determine max buffer needed and allocate it */ 35044683f7a4SShri Abhyankar maxnz = procsnz[0]; 35054683f7a4SShri Abhyankar for (i=1; i<size; i++) { 35064683f7a4SShri Abhyankar maxnz = PetscMax(maxnz,procsnz[i]); 35074683f7a4SShri Abhyankar } 3508785e854fSJed Brown ierr = PetscMalloc1(maxnz,&cols);CHKERRQ(ierr); 35094683f7a4SShri Abhyankar 35104683f7a4SShri Abhyankar /* read in my part of the matrix column indices */ 35114683f7a4SShri Abhyankar nz = procsnz[0]; 3512785e854fSJed Brown ierr = PetscMalloc1((nz+1),&ibuf);CHKERRQ(ierr); 35134683f7a4SShri Abhyankar mycols = ibuf; 35144683f7a4SShri Abhyankar if (size == 1) nz -= extra_rows; 35154683f7a4SShri Abhyankar ierr = PetscBinaryRead(fd,mycols,nz,PETSC_INT);CHKERRQ(ierr); 351626fbe8dcSKarl Rupp if (size == 1) { 351726fbe8dcSKarl Rupp for (i=0; i< extra_rows; i++) mycols[nz+i] = M+i; 351826fbe8dcSKarl Rupp } 35194683f7a4SShri Abhyankar 35204683f7a4SShri Abhyankar /* read in every ones (except the last) and ship off */ 35214683f7a4SShri Abhyankar for (i=1; i<size-1; i++) { 35224683f7a4SShri Abhyankar nz = procsnz[i]; 35234683f7a4SShri Abhyankar ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr); 35244683f7a4SShri Abhyankar ierr = MPI_Send(cols,nz,MPIU_INT,i,tag,comm);CHKERRQ(ierr); 35254683f7a4SShri Abhyankar } 35264683f7a4SShri Abhyankar /* read in the stuff for the last proc */ 35274683f7a4SShri Abhyankar if (size != 1) { 35284683f7a4SShri Abhyankar nz = procsnz[size-1] - extra_rows; /* the extra rows are not on the disk */ 35294683f7a4SShri Abhyankar ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr); 35304683f7a4SShri Abhyankar for (i=0; i<extra_rows; i++) cols[nz+i] = M+i; 35314683f7a4SShri Abhyankar ierr = MPI_Send(cols,nz+extra_rows,MPIU_INT,size-1,tag,comm);CHKERRQ(ierr); 35324683f7a4SShri Abhyankar } 35334683f7a4SShri Abhyankar ierr = PetscFree(cols);CHKERRQ(ierr); 35344683f7a4SShri Abhyankar } else { 35354683f7a4SShri Abhyankar /* determine buffer space needed for message */ 35364683f7a4SShri Abhyankar nz = 0; 35374683f7a4SShri Abhyankar for (i=0; i<m; i++) { 35384683f7a4SShri Abhyankar nz += locrowlens[i]; 35394683f7a4SShri Abhyankar } 3540785e854fSJed Brown ierr = PetscMalloc1((nz+1),&ibuf);CHKERRQ(ierr); 35414683f7a4SShri Abhyankar mycols = ibuf; 35424683f7a4SShri Abhyankar /* receive message of column indices*/ 35434683f7a4SShri Abhyankar ierr = MPI_Recv(mycols,nz,MPIU_INT,0,tag,comm,&status);CHKERRQ(ierr); 35444683f7a4SShri Abhyankar ierr = MPI_Get_count(&status,MPIU_INT,&maxnz);CHKERRQ(ierr); 35454683f7a4SShri Abhyankar if (maxnz != nz) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 35464683f7a4SShri Abhyankar } 35474683f7a4SShri Abhyankar 35484683f7a4SShri Abhyankar /* loop over local rows, determining number of off diagonal entries */ 3549dcca6d9dSJed Brown ierr = PetscMalloc2(rend-rstart,&dlens,rend-rstart,&odlens);CHKERRQ(ierr); 35501795a4d1SJed Brown ierr = PetscCalloc3(Mbs,&mask,Mbs,&masked1,Mbs,&masked2);CHKERRQ(ierr); 35514683f7a4SShri Abhyankar rowcount = 0; nzcount = 0; 35524683f7a4SShri Abhyankar for (i=0; i<mbs; i++) { 35534683f7a4SShri Abhyankar dcount = 0; 35544683f7a4SShri Abhyankar odcount = 0; 35554683f7a4SShri Abhyankar for (j=0; j<bs; j++) { 35564683f7a4SShri Abhyankar kmax = locrowlens[rowcount]; 35574683f7a4SShri Abhyankar for (k=0; k<kmax; k++) { 35584683f7a4SShri Abhyankar tmp = mycols[nzcount++]/bs; 35594683f7a4SShri Abhyankar if (!mask[tmp]) { 35604683f7a4SShri Abhyankar mask[tmp] = 1; 35614683f7a4SShri Abhyankar if (tmp < rstart || tmp >= rend) masked2[odcount++] = tmp; 35624683f7a4SShri Abhyankar else masked1[dcount++] = tmp; 35634683f7a4SShri Abhyankar } 35644683f7a4SShri Abhyankar } 35654683f7a4SShri Abhyankar rowcount++; 35664683f7a4SShri Abhyankar } 35674683f7a4SShri Abhyankar 35684683f7a4SShri Abhyankar dlens[i] = dcount; 35694683f7a4SShri Abhyankar odlens[i] = odcount; 35704683f7a4SShri Abhyankar 35714683f7a4SShri Abhyankar /* zero out the mask elements we set */ 35724683f7a4SShri Abhyankar for (j=0; j<dcount; j++) mask[masked1[j]] = 0; 35734683f7a4SShri Abhyankar for (j=0; j<odcount; j++) mask[masked2[j]] = 0; 35744683f7a4SShri Abhyankar } 35754683f7a4SShri Abhyankar 35764683f7a4SShri Abhyankar 35774683f7a4SShri Abhyankar if (!sizesset) { 35784683f7a4SShri Abhyankar ierr = MatSetSizes(newmat,m,m,M+extra_rows,N+extra_rows);CHKERRQ(ierr); 35794683f7a4SShri Abhyankar } 35804683f7a4SShri Abhyankar ierr = MatMPIBAIJSetPreallocation(newmat,bs,0,dlens,0,odlens);CHKERRQ(ierr); 35814683f7a4SShri Abhyankar 35824683f7a4SShri Abhyankar if (!rank) { 3583785e854fSJed Brown ierr = PetscMalloc1((maxnz+1),&buf);CHKERRQ(ierr); 35844683f7a4SShri Abhyankar /* read in my part of the matrix numerical values */ 35854683f7a4SShri Abhyankar nz = procsnz[0]; 35864683f7a4SShri Abhyankar vals = buf; 35874683f7a4SShri Abhyankar mycols = ibuf; 35884683f7a4SShri Abhyankar if (size == 1) nz -= extra_rows; 35894683f7a4SShri Abhyankar ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 359026fbe8dcSKarl Rupp if (size == 1) { 359126fbe8dcSKarl Rupp for (i=0; i< extra_rows; i++) vals[nz+i] = 1.0; 359226fbe8dcSKarl Rupp } 35934683f7a4SShri Abhyankar 35944683f7a4SShri Abhyankar /* insert into matrix */ 35954683f7a4SShri Abhyankar jj = rstart*bs; 35964683f7a4SShri Abhyankar for (i=0; i<m; i++) { 35974683f7a4SShri Abhyankar ierr = MatSetValues_MPIBAIJ(newmat,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr); 35984683f7a4SShri Abhyankar mycols += locrowlens[i]; 35994683f7a4SShri Abhyankar vals += locrowlens[i]; 36004683f7a4SShri Abhyankar jj++; 36014683f7a4SShri Abhyankar } 36024683f7a4SShri Abhyankar /* read in other processors (except the last one) and ship out */ 36034683f7a4SShri Abhyankar for (i=1; i<size-1; i++) { 36044683f7a4SShri Abhyankar nz = procsnz[i]; 36054683f7a4SShri Abhyankar vals = buf; 36064683f7a4SShri Abhyankar ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 3607479e424cSMichael Lange ierr = MPIULong_Send(vals,nz,MPIU_SCALAR,i,((PetscObject)newmat)->tag,comm);CHKERRQ(ierr); 36084683f7a4SShri Abhyankar } 36094683f7a4SShri Abhyankar /* the last proc */ 36104683f7a4SShri Abhyankar if (size != 1) { 36114683f7a4SShri Abhyankar nz = procsnz[i] - extra_rows; 36124683f7a4SShri Abhyankar vals = buf; 36134683f7a4SShri Abhyankar ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 36144683f7a4SShri Abhyankar for (i=0; i<extra_rows; i++) vals[nz+i] = 1.0; 3615479e424cSMichael Lange ierr = MPIULong_Send(vals,nz+extra_rows,MPIU_SCALAR,size-1,((PetscObject)newmat)->tag,comm);CHKERRQ(ierr); 36164683f7a4SShri Abhyankar } 36174683f7a4SShri Abhyankar ierr = PetscFree(procsnz);CHKERRQ(ierr); 36184683f7a4SShri Abhyankar } else { 36194683f7a4SShri Abhyankar /* receive numeric values */ 3620785e854fSJed Brown ierr = PetscMalloc1((nz+1),&buf);CHKERRQ(ierr); 36214683f7a4SShri Abhyankar 36224683f7a4SShri Abhyankar /* receive message of values*/ 36234683f7a4SShri Abhyankar vals = buf; 36244683f7a4SShri Abhyankar mycols = ibuf; 3625479e424cSMichael Lange ierr = MPIULong_Recv(vals,nz,MPIU_SCALAR,0,((PetscObject)newmat)->tag,comm);CHKERRQ(ierr); 36264683f7a4SShri Abhyankar 36274683f7a4SShri Abhyankar /* insert into matrix */ 36284683f7a4SShri Abhyankar jj = rstart*bs; 36294683f7a4SShri Abhyankar for (i=0; i<m; i++) { 36304683f7a4SShri Abhyankar ierr = MatSetValues_MPIBAIJ(newmat,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr); 36314683f7a4SShri Abhyankar mycols += locrowlens[i]; 36324683f7a4SShri Abhyankar vals += locrowlens[i]; 36334683f7a4SShri Abhyankar jj++; 36344683f7a4SShri Abhyankar } 36354683f7a4SShri Abhyankar } 36364683f7a4SShri Abhyankar ierr = PetscFree(locrowlens);CHKERRQ(ierr); 36374683f7a4SShri Abhyankar ierr = PetscFree(buf);CHKERRQ(ierr); 36384683f7a4SShri Abhyankar ierr = PetscFree(ibuf);CHKERRQ(ierr); 36394683f7a4SShri Abhyankar ierr = PetscFree2(rowners,browners);CHKERRQ(ierr); 36404683f7a4SShri Abhyankar ierr = PetscFree2(dlens,odlens);CHKERRQ(ierr); 36414683f7a4SShri Abhyankar ierr = PetscFree3(mask,masked1,masked2);CHKERRQ(ierr); 36424683f7a4SShri Abhyankar ierr = MatAssemblyBegin(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 36434683f7a4SShri Abhyankar ierr = MatAssemblyEnd(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 36444683f7a4SShri Abhyankar PetscFunctionReturn(0); 36454683f7a4SShri Abhyankar } 36464683f7a4SShri Abhyankar 36474683f7a4SShri Abhyankar #undef __FUNCT__ 36484a2ae208SSatish Balay #define __FUNCT__ "MatMPIBAIJSetHashTableFactor" 3649133cdb44SSatish Balay /*@ 3650133cdb44SSatish Balay MatMPIBAIJSetHashTableFactor - Sets the factor required to compute the size of the HashTable. 3651133cdb44SSatish Balay 3652133cdb44SSatish Balay Input Parameters: 3653133cdb44SSatish Balay . mat - the matrix 3654133cdb44SSatish Balay . fact - factor 3655133cdb44SSatish Balay 3656c5eb9154SBarry Smith Not Collective, each process can use a different factor 3657fee21e36SBarry Smith 36588c890885SBarry Smith Level: advanced 36598c890885SBarry Smith 3660133cdb44SSatish Balay Notes: 36618c07d4e3SBarry Smith This can also be set by the command line option: -mat_use_hash_table <fact> 3662133cdb44SSatish Balay 3663133cdb44SSatish Balay .keywords: matrix, hashtable, factor, HT 3664133cdb44SSatish Balay 3665133cdb44SSatish Balay .seealso: MatSetOption() 3666133cdb44SSatish Balay @*/ 36677087cfbeSBarry Smith PetscErrorCode MatMPIBAIJSetHashTableFactor(Mat mat,PetscReal fact) 3668133cdb44SSatish Balay { 36694ac538c5SBarry Smith PetscErrorCode ierr; 36705bf65638SKris Buschelman 36715bf65638SKris Buschelman PetscFunctionBegin; 36724ac538c5SBarry Smith ierr = PetscTryMethod(mat,"MatSetHashTableFactor_C",(Mat,PetscReal),(mat,fact));CHKERRQ(ierr); 36735bf65638SKris Buschelman PetscFunctionReturn(0); 36745bf65638SKris Buschelman } 36755bf65638SKris Buschelman 36765bf65638SKris Buschelman #undef __FUNCT__ 36775bf65638SKris Buschelman #define __FUNCT__ "MatSetHashTableFactor_MPIBAIJ" 36787087cfbeSBarry Smith PetscErrorCode MatSetHashTableFactor_MPIBAIJ(Mat mat,PetscReal fact) 36795bf65638SKris Buschelman { 368025fdafccSSatish Balay Mat_MPIBAIJ *baij; 3681133cdb44SSatish Balay 3682133cdb44SSatish Balay PetscFunctionBegin; 3683133cdb44SSatish Balay baij = (Mat_MPIBAIJ*)mat->data; 3684133cdb44SSatish Balay baij->ht_fact = fact; 3685133cdb44SSatish Balay PetscFunctionReturn(0); 3686133cdb44SSatish Balay } 3687f2a5309cSSatish Balay 36884a2ae208SSatish Balay #undef __FUNCT__ 36894a2ae208SSatish Balay #define __FUNCT__ "MatMPIBAIJGetSeqBAIJ" 36909230625dSJed Brown PetscErrorCode MatMPIBAIJGetSeqBAIJ(Mat A,Mat *Ad,Mat *Ao,const PetscInt *colmap[]) 3691f2a5309cSSatish Balay { 3692f2a5309cSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 36935fd66863SKarl Rupp 3694f2a5309cSSatish Balay PetscFunctionBegin; 369521e72a00SBarry Smith if (Ad) *Ad = a->A; 369621e72a00SBarry Smith if (Ao) *Ao = a->B; 369721e72a00SBarry Smith if (colmap) *colmap = a->garray; 3698f2a5309cSSatish Balay PetscFunctionReturn(0); 3699f2a5309cSSatish Balay } 370085535b8eSBarry Smith 370185535b8eSBarry Smith /* 370285535b8eSBarry Smith Special version for direct calls from Fortran (to eliminate two function call overheads 370385535b8eSBarry Smith */ 370485535b8eSBarry Smith #if defined(PETSC_HAVE_FORTRAN_CAPS) 370585535b8eSBarry Smith #define matmpibaijsetvaluesblocked_ MATMPIBAIJSETVALUESBLOCKED 370685535b8eSBarry Smith #elif !defined(PETSC_HAVE_FORTRAN_UNDERSCORE) 370785535b8eSBarry Smith #define matmpibaijsetvaluesblocked_ matmpibaijsetvaluesblocked 370885535b8eSBarry Smith #endif 370985535b8eSBarry Smith 371085535b8eSBarry Smith #undef __FUNCT__ 371185535b8eSBarry Smith #define __FUNCT__ "matmpibiajsetvaluesblocked" 371285535b8eSBarry Smith /*@C 371385535b8eSBarry Smith MatMPIBAIJSetValuesBlocked - Direct Fortran call to replace call to MatSetValuesBlocked() 371485535b8eSBarry Smith 371585535b8eSBarry Smith Collective on Mat 371685535b8eSBarry Smith 371785535b8eSBarry Smith Input Parameters: 371885535b8eSBarry Smith + mat - the matrix 371985535b8eSBarry Smith . min - number of input rows 372085535b8eSBarry Smith . im - input rows 372185535b8eSBarry Smith . nin - number of input columns 372285535b8eSBarry Smith . in - input columns 372385535b8eSBarry Smith . v - numerical values input 372485535b8eSBarry Smith - addvin - INSERT_VALUES or ADD_VALUES 372585535b8eSBarry Smith 372685535b8eSBarry Smith Notes: This has a complete copy of MatSetValuesBlocked_MPIBAIJ() which is terrible code un-reuse. 372785535b8eSBarry Smith 372885535b8eSBarry Smith Level: advanced 372985535b8eSBarry Smith 373085535b8eSBarry Smith .seealso: MatSetValuesBlocked() 373185535b8eSBarry Smith @*/ 373285535b8eSBarry Smith PetscErrorCode matmpibaijsetvaluesblocked_(Mat *matin,PetscInt *min,const PetscInt im[],PetscInt *nin,const PetscInt in[],const MatScalar v[],InsertMode *addvin) 373385535b8eSBarry Smith { 373485535b8eSBarry Smith /* convert input arguments to C version */ 373585535b8eSBarry Smith Mat mat = *matin; 373685535b8eSBarry Smith PetscInt m = *min, n = *nin; 373785535b8eSBarry Smith InsertMode addv = *addvin; 373885535b8eSBarry Smith 373985535b8eSBarry Smith Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 374085535b8eSBarry Smith const MatScalar *value; 374185535b8eSBarry Smith MatScalar *barray = baij->barray; 3742ace3abfcSBarry Smith PetscBool roworiented = baij->roworiented; 374385535b8eSBarry Smith PetscErrorCode ierr; 374485535b8eSBarry Smith PetscInt i,j,ii,jj,row,col,rstart=baij->rstartbs; 374585535b8eSBarry Smith PetscInt rend=baij->rendbs,cstart=baij->cstartbs,stepval; 3746d0f46423SBarry Smith PetscInt cend=baij->cendbs,bs=mat->rmap->bs,bs2=baij->bs2; 374785535b8eSBarry Smith 374885535b8eSBarry Smith PetscFunctionBegin; 374985535b8eSBarry Smith /* tasks normally handled by MatSetValuesBlocked() */ 375026fbe8dcSKarl Rupp if (mat->insertmode == NOT_SET_VALUES) mat->insertmode = addv; 375185535b8eSBarry Smith #if defined(PETSC_USE_DEBUG) 3752e7e72b3dSBarry Smith else if (mat->insertmode != addv) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Cannot mix add values and insert values"); 3753e32f2f54SBarry Smith if (mat->factortype) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Not for factored matrix"); 375485535b8eSBarry Smith #endif 375585535b8eSBarry Smith if (mat->assembled) { 375685535b8eSBarry Smith mat->was_assembled = PETSC_TRUE; 375785535b8eSBarry Smith mat->assembled = PETSC_FALSE; 375885535b8eSBarry Smith } 375985535b8eSBarry Smith ierr = PetscLogEventBegin(MAT_SetValues,mat,0,0,0);CHKERRQ(ierr); 376085535b8eSBarry Smith 376185535b8eSBarry Smith 376285535b8eSBarry Smith if (!barray) { 3763785e854fSJed Brown ierr = PetscMalloc1(bs2,&barray);CHKERRQ(ierr); 376485535b8eSBarry Smith baij->barray = barray; 376585535b8eSBarry Smith } 376685535b8eSBarry Smith 376726fbe8dcSKarl Rupp if (roworiented) stepval = (n-1)*bs; 376826fbe8dcSKarl Rupp else stepval = (m-1)*bs; 376926fbe8dcSKarl Rupp 377085535b8eSBarry Smith for (i=0; i<m; i++) { 377185535b8eSBarry Smith if (im[i] < 0) continue; 377285535b8eSBarry Smith #if defined(PETSC_USE_DEBUG) 3773e32f2f54SBarry Smith if (im[i] >= baij->Mbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large, row %D max %D",im[i],baij->Mbs-1); 377485535b8eSBarry Smith #endif 377585535b8eSBarry Smith if (im[i] >= rstart && im[i] < rend) { 377685535b8eSBarry Smith row = im[i] - rstart; 377785535b8eSBarry Smith for (j=0; j<n; j++) { 377885535b8eSBarry Smith /* If NumCol = 1 then a copy is not required */ 377985535b8eSBarry Smith if ((roworiented) && (n == 1)) { 378085535b8eSBarry Smith barray = (MatScalar*)v + i*bs2; 378185535b8eSBarry Smith } else if ((!roworiented) && (m == 1)) { 378285535b8eSBarry Smith barray = (MatScalar*)v + j*bs2; 378385535b8eSBarry Smith } else { /* Here a copy is required */ 378485535b8eSBarry Smith if (roworiented) { 378585535b8eSBarry Smith value = v + i*(stepval+bs)*bs + j*bs; 378685535b8eSBarry Smith } else { 378785535b8eSBarry Smith value = v + j*(stepval+bs)*bs + i*bs; 378885535b8eSBarry Smith } 378985535b8eSBarry Smith for (ii=0; ii<bs; ii++,value+=stepval) { 379085535b8eSBarry Smith for (jj=0; jj<bs; jj++) { 379185535b8eSBarry Smith *barray++ = *value++; 379285535b8eSBarry Smith } 379385535b8eSBarry Smith } 379485535b8eSBarry Smith barray -=bs2; 379585535b8eSBarry Smith } 379685535b8eSBarry Smith 379785535b8eSBarry Smith if (in[j] >= cstart && in[j] < cend) { 379885535b8eSBarry Smith col = in[j] - cstart; 379997e5c40aSBarry Smith ierr = MatSetValuesBlocked_SeqBAIJ(baij->A,1,&row,1,&col,barray,addv);CHKERRQ(ierr); 380026fbe8dcSKarl Rupp } else if (in[j] < 0) continue; 380185535b8eSBarry Smith #if defined(PETSC_USE_DEBUG) 3802cb9801acSJed Brown else if (in[j] >= baij->Nbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large, col %D max %D",in[j],baij->Nbs-1); 380385535b8eSBarry Smith #endif 380485535b8eSBarry Smith else { 380585535b8eSBarry Smith if (mat->was_assembled) { 380685535b8eSBarry Smith if (!baij->colmap) { 3807ab9863d7SBarry Smith ierr = MatCreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 380885535b8eSBarry Smith } 380985535b8eSBarry Smith 381085535b8eSBarry Smith #if defined(PETSC_USE_DEBUG) 381185535b8eSBarry Smith #if defined(PETSC_USE_CTABLE) 381285535b8eSBarry Smith { PetscInt data; 381385535b8eSBarry Smith ierr = PetscTableFind(baij->colmap,in[j]+1,&data);CHKERRQ(ierr); 3814e32f2f54SBarry Smith if ((data - 1) % bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap"); 381585535b8eSBarry Smith } 381685535b8eSBarry Smith #else 3817e32f2f54SBarry Smith if ((baij->colmap[in[j]] - 1) % bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap"); 381885535b8eSBarry Smith #endif 381985535b8eSBarry Smith #endif 382085535b8eSBarry Smith #if defined(PETSC_USE_CTABLE) 382185535b8eSBarry Smith ierr = PetscTableFind(baij->colmap,in[j]+1,&col);CHKERRQ(ierr); 382285535b8eSBarry Smith col = (col - 1)/bs; 382385535b8eSBarry Smith #else 382485535b8eSBarry Smith col = (baij->colmap[in[j]] - 1)/bs; 382585535b8eSBarry Smith #endif 382685535b8eSBarry Smith if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) { 3827ab9863d7SBarry Smith ierr = MatDisAssemble_MPIBAIJ(mat);CHKERRQ(ierr); 382885535b8eSBarry Smith col = in[j]; 382985535b8eSBarry Smith } 383026fbe8dcSKarl Rupp } else col = in[j]; 383197e5c40aSBarry Smith ierr = MatSetValuesBlocked_SeqBAIJ(baij->B,1,&row,1,&col,barray,addv);CHKERRQ(ierr); 383285535b8eSBarry Smith } 383385535b8eSBarry Smith } 383485535b8eSBarry Smith } else { 383585535b8eSBarry Smith if (!baij->donotstash) { 383685535b8eSBarry Smith if (roworiented) { 383785535b8eSBarry Smith ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 383885535b8eSBarry Smith } else { 383985535b8eSBarry Smith ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 384085535b8eSBarry Smith } 384185535b8eSBarry Smith } 384285535b8eSBarry Smith } 384385535b8eSBarry Smith } 384485535b8eSBarry Smith 384585535b8eSBarry Smith /* task normally handled by MatSetValuesBlocked() */ 384685535b8eSBarry Smith ierr = PetscLogEventEnd(MAT_SetValues,mat,0,0,0);CHKERRQ(ierr); 384785535b8eSBarry Smith PetscFunctionReturn(0); 384885535b8eSBarry Smith } 3849dfb205c3SBarry Smith 3850dfb205c3SBarry Smith #undef __FUNCT__ 3851dfb205c3SBarry Smith #define __FUNCT__ "MatCreateMPIBAIJWithArrays" 3852dfb205c3SBarry Smith /*@ 3853dfb205c3SBarry Smith MatCreateMPIBAIJWithArrays - creates a MPI BAIJ matrix using arrays that contain in standard 3854dfb205c3SBarry Smith CSR format the local rows. 3855dfb205c3SBarry Smith 3856dfb205c3SBarry Smith Collective on MPI_Comm 3857dfb205c3SBarry Smith 3858dfb205c3SBarry Smith Input Parameters: 3859dfb205c3SBarry Smith + comm - MPI communicator 3860dfb205c3SBarry Smith . bs - the block size, only a block size of 1 is supported 3861dfb205c3SBarry Smith . m - number of local rows (Cannot be PETSC_DECIDE) 3862dfb205c3SBarry Smith . n - This value should be the same as the local size used in creating the 3863dfb205c3SBarry Smith x vector for the matrix-vector product y = Ax. (or PETSC_DECIDE to have 3864dfb205c3SBarry Smith calculated if N is given) For square matrices n is almost always m. 3865dfb205c3SBarry Smith . M - number of global rows (or PETSC_DETERMINE to have calculated if m is given) 3866dfb205c3SBarry Smith . N - number of global columns (or PETSC_DETERMINE to have calculated if n is given) 3867dfb205c3SBarry Smith . i - row indices 3868dfb205c3SBarry Smith . j - column indices 3869dfb205c3SBarry Smith - a - matrix values 3870dfb205c3SBarry Smith 3871dfb205c3SBarry Smith Output Parameter: 3872dfb205c3SBarry Smith . mat - the matrix 3873dfb205c3SBarry Smith 3874dfb205c3SBarry Smith Level: intermediate 3875dfb205c3SBarry Smith 3876dfb205c3SBarry Smith Notes: 3877dfb205c3SBarry Smith The i, j, and a arrays ARE copied by this routine into the internal format used by PETSc; 3878dfb205c3SBarry Smith thus you CANNOT change the matrix entries by changing the values of a[] after you have 3879dfb205c3SBarry Smith called this routine. Use MatCreateMPIAIJWithSplitArrays() to avoid needing to copy the arrays. 3880dfb205c3SBarry Smith 38813adadaf3SJed Brown The order of the entries in values is the same as the block compressed sparse row storage format; that is, it is 38823adadaf3SJed Brown the same as a three dimensional array in Fortran values(bs,bs,nnz) that contains the first column of the first 38833adadaf3SJed Brown block, followed by the second column of the first block etc etc. That is, the blocks are contiguous in memory 38843adadaf3SJed Brown with column-major ordering within blocks. 38853adadaf3SJed Brown 3886dfb205c3SBarry Smith The i and j indices are 0 based, and i indices are indices corresponding to the local j array. 3887dfb205c3SBarry Smith 3888dfb205c3SBarry Smith .keywords: matrix, aij, compressed row, sparse, parallel 3889dfb205c3SBarry Smith 3890dfb205c3SBarry Smith .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatMPIAIJSetPreallocation(), MatMPIAIJSetPreallocationCSR(), 389169b1f4b7SBarry Smith MPIAIJ, MatCreateAIJ(), MatCreateMPIAIJWithSplitArrays() 3892dfb205c3SBarry Smith @*/ 38937087cfbeSBarry Smith PetscErrorCode MatCreateMPIBAIJWithArrays(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,const PetscInt i[],const PetscInt j[],const PetscScalar a[],Mat *mat) 3894dfb205c3SBarry Smith { 3895dfb205c3SBarry Smith PetscErrorCode ierr; 3896dfb205c3SBarry Smith 3897dfb205c3SBarry Smith PetscFunctionBegin; 3898f23aa3ddSBarry Smith if (i[0]) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"i (row indices) must start with 0"); 3899dfb205c3SBarry Smith if (m < 0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"local number of rows (m) cannot be PETSC_DECIDE, or negative"); 3900dfb205c3SBarry Smith ierr = MatCreate(comm,mat);CHKERRQ(ierr); 3901dfb205c3SBarry Smith ierr = MatSetSizes(*mat,m,n,M,N);CHKERRQ(ierr); 3902dfb205c3SBarry Smith ierr = MatSetType(*mat,MATMPISBAIJ);CHKERRQ(ierr); 3903d47bf9aaSJed Brown ierr = MatSetOption(*mat,MAT_ROW_ORIENTED,PETSC_FALSE);CHKERRQ(ierr); 3904dfb205c3SBarry Smith ierr = MatMPIBAIJSetPreallocationCSR(*mat,bs,i,j,a);CHKERRQ(ierr); 3905d47bf9aaSJed Brown ierr = MatSetOption(*mat,MAT_ROW_ORIENTED,PETSC_TRUE);CHKERRQ(ierr); 3906dfb205c3SBarry Smith PetscFunctionReturn(0); 3907dfb205c3SBarry Smith } 3908