xref: /petsc/src/mat/impls/baij/mpi/mpibaij.c (revision 4b4eb8d3b5c67aff3d3d02420f547e6671225154)
179bdfe76SSatish Balay 
2c6db04a5SJed Brown #include <../src/mat/impls/baij/mpi/mpibaij.h>   /*I  "petscmat.h"  I*/
3c5d9258eSSatish Balay 
4c6db04a5SJed Brown #include <petscblaslapack.h>
565a92638SMatthew G. Knepley #include <petscsf.h>
679bdfe76SSatish Balay 
74a2ae208SSatish Balay #undef __FUNCT__
8985db425SBarry Smith #define __FUNCT__ "MatGetRowMaxAbs_MPIBAIJ"
9985db425SBarry Smith PetscErrorCode MatGetRowMaxAbs_MPIBAIJ(Mat A,Vec v,PetscInt idx[])
107843d17aSBarry Smith {
117843d17aSBarry Smith   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)A->data;
12dfbe8321SBarry Smith   PetscErrorCode ierr;
13985db425SBarry Smith   PetscInt       i,*idxb = 0;
1487828ca2SBarry Smith   PetscScalar    *va,*vb;
157843d17aSBarry Smith   Vec            vtmp;
167843d17aSBarry Smith 
177843d17aSBarry Smith   PetscFunctionBegin;
18985db425SBarry Smith   ierr = MatGetRowMaxAbs(a->A,v,idx);CHKERRQ(ierr);
191ebc52fbSHong Zhang   ierr = VecGetArray(v,&va);CHKERRQ(ierr);
20985db425SBarry Smith   if (idx) {
2126fbe8dcSKarl Rupp     for (i=0; i<A->rmap->n; i++) {
2226fbe8dcSKarl Rupp       if (PetscAbsScalar(va[i])) idx[i] += A->cmap->rstart;
2326fbe8dcSKarl Rupp     }
24985db425SBarry Smith   }
257843d17aSBarry Smith 
26d0f46423SBarry Smith   ierr = VecCreateSeq(PETSC_COMM_SELF,A->rmap->n,&vtmp);CHKERRQ(ierr);
27785e854fSJed Brown   if (idx) {ierr = PetscMalloc1(A->rmap->n,&idxb);CHKERRQ(ierr);}
28985db425SBarry Smith   ierr = MatGetRowMaxAbs(a->B,vtmp,idxb);CHKERRQ(ierr);
291ebc52fbSHong Zhang   ierr = VecGetArray(vtmp,&vb);CHKERRQ(ierr);
307843d17aSBarry Smith 
31d0f46423SBarry Smith   for (i=0; i<A->rmap->n; i++) {
3226fbe8dcSKarl Rupp     if (PetscAbsScalar(va[i]) < PetscAbsScalar(vb[i])) {
3326fbe8dcSKarl Rupp       va[i] = vb[i];
3426fbe8dcSKarl Rupp       if (idx) idx[i] = A->cmap->bs*a->garray[idxb[i]/A->cmap->bs] + (idxb[i] % A->cmap->bs);
3526fbe8dcSKarl Rupp     }
367843d17aSBarry Smith   }
377843d17aSBarry Smith 
381ebc52fbSHong Zhang   ierr = VecRestoreArray(v,&va);CHKERRQ(ierr);
391ebc52fbSHong Zhang   ierr = VecRestoreArray(vtmp,&vb);CHKERRQ(ierr);
40c31cb41cSBarry Smith   ierr = PetscFree(idxb);CHKERRQ(ierr);
416bf464f9SBarry Smith   ierr = VecDestroy(&vtmp);CHKERRQ(ierr);
427843d17aSBarry Smith   PetscFunctionReturn(0);
437843d17aSBarry Smith }
447843d17aSBarry Smith 
454a2ae208SSatish Balay #undef __FUNCT__
464a2ae208SSatish Balay #define __FUNCT__ "MatStoreValues_MPIBAIJ"
477087cfbeSBarry Smith PetscErrorCode  MatStoreValues_MPIBAIJ(Mat mat)
487fc3c18eSBarry Smith {
497fc3c18eSBarry Smith   Mat_MPIBAIJ    *aij = (Mat_MPIBAIJ*)mat->data;
50dfbe8321SBarry Smith   PetscErrorCode ierr;
517fc3c18eSBarry Smith 
527fc3c18eSBarry Smith   PetscFunctionBegin;
537fc3c18eSBarry Smith   ierr = MatStoreValues(aij->A);CHKERRQ(ierr);
547fc3c18eSBarry Smith   ierr = MatStoreValues(aij->B);CHKERRQ(ierr);
557fc3c18eSBarry Smith   PetscFunctionReturn(0);
567fc3c18eSBarry Smith }
577fc3c18eSBarry Smith 
584a2ae208SSatish Balay #undef __FUNCT__
594a2ae208SSatish Balay #define __FUNCT__ "MatRetrieveValues_MPIBAIJ"
607087cfbeSBarry Smith PetscErrorCode  MatRetrieveValues_MPIBAIJ(Mat mat)
617fc3c18eSBarry Smith {
627fc3c18eSBarry Smith   Mat_MPIBAIJ    *aij = (Mat_MPIBAIJ*)mat->data;
63dfbe8321SBarry Smith   PetscErrorCode ierr;
647fc3c18eSBarry Smith 
657fc3c18eSBarry Smith   PetscFunctionBegin;
667fc3c18eSBarry Smith   ierr = MatRetrieveValues(aij->A);CHKERRQ(ierr);
677fc3c18eSBarry Smith   ierr = MatRetrieveValues(aij->B);CHKERRQ(ierr);
687fc3c18eSBarry Smith   PetscFunctionReturn(0);
697fc3c18eSBarry Smith }
707fc3c18eSBarry Smith 
71537820f0SBarry Smith /*
72537820f0SBarry Smith      Local utility routine that creates a mapping from the global column
7357b952d6SSatish Balay    number to the local number in the off-diagonal part of the local
74e06f6af7SJed Brown    storage of the matrix.  This is done in a non scalable way since the
7557b952d6SSatish Balay    length of colmap equals the global matrix length.
7657b952d6SSatish Balay */
774a2ae208SSatish Balay #undef __FUNCT__
78ab9863d7SBarry Smith #define __FUNCT__ "MatCreateColmap_MPIBAIJ_Private"
79ab9863d7SBarry Smith PetscErrorCode MatCreateColmap_MPIBAIJ_Private(Mat mat)
8057b952d6SSatish Balay {
8157b952d6SSatish Balay   Mat_MPIBAIJ    *baij = (Mat_MPIBAIJ*)mat->data;
8257b952d6SSatish Balay   Mat_SeqBAIJ    *B    = (Mat_SeqBAIJ*)baij->B->data;
836849ba73SBarry Smith   PetscErrorCode ierr;
84d0f46423SBarry Smith   PetscInt       nbs = B->nbs,i,bs=mat->rmap->bs;
8557b952d6SSatish Balay 
86d64ed03dSBarry Smith   PetscFunctionBegin;
87aa482453SBarry Smith #if defined(PETSC_USE_CTABLE)
88e23dfa41SBarry Smith   ierr = PetscTableCreate(baij->nbs,baij->Nbs+1,&baij->colmap);CHKERRQ(ierr);
8948e59246SSatish Balay   for (i=0; i<nbs; i++) {
903861aac3SJed Brown     ierr = PetscTableAdd(baij->colmap,baij->garray[i]+1,i*bs+1,INSERT_VALUES);CHKERRQ(ierr);
9148e59246SSatish Balay   }
9248e59246SSatish Balay #else
93785e854fSJed Brown   ierr = PetscMalloc1((baij->Nbs+1),&baij->colmap);CHKERRQ(ierr);
943bb1ff40SBarry Smith   ierr = PetscLogObjectMemory((PetscObject)mat,baij->Nbs*sizeof(PetscInt));CHKERRQ(ierr);
95b24ad042SBarry Smith   ierr = PetscMemzero(baij->colmap,baij->Nbs*sizeof(PetscInt));CHKERRQ(ierr);
96928fc39bSSatish Balay   for (i=0; i<nbs; i++) baij->colmap[baij->garray[i]] = i*bs+1;
9748e59246SSatish Balay #endif
983a40ed3dSBarry Smith   PetscFunctionReturn(0);
9957b952d6SSatish Balay }
10057b952d6SSatish Balay 
101f5e9677aSSatish Balay #define  MatSetValues_SeqBAIJ_A_Private(row,col,value,addv) \
10280c1aa95SSatish Balay   { \
10380c1aa95SSatish Balay  \
10480c1aa95SSatish Balay     brow = row/bs;  \
10580c1aa95SSatish Balay     rp   = aj + ai[brow]; ap = aa + bs2*ai[brow]; \
106ac7a638eSSatish Balay     rmax = aimax[brow]; nrow = ailen[brow]; \
10780c1aa95SSatish Balay     bcol = col/bs; \
10880c1aa95SSatish Balay     ridx = row % bs; cidx = col % bs; \
109ab26458aSBarry Smith     low  = 0; high = nrow; \
110ab26458aSBarry Smith     while (high-low > 3) { \
111ab26458aSBarry Smith       t = (low+high)/2; \
112ab26458aSBarry Smith       if (rp[t] > bcol) high = t; \
113ab26458aSBarry Smith       else              low  = t; \
114ab26458aSBarry Smith     } \
115ab26458aSBarry Smith     for (_i=low; _i<high; _i++) { \
11680c1aa95SSatish Balay       if (rp[_i] > bcol) break; \
11780c1aa95SSatish Balay       if (rp[_i] == bcol) { \
11880c1aa95SSatish Balay         bap = ap +  bs2*_i + bs*cidx + ridx; \
119eada6651SSatish Balay         if (addv == ADD_VALUES) *bap += value;  \
120eada6651SSatish Balay         else                    *bap  = value;  \
121ac7a638eSSatish Balay         goto a_noinsert; \
12280c1aa95SSatish Balay       } \
12380c1aa95SSatish Balay     } \
12489280ab3SLois Curfman McInnes     if (a->nonew == 1) goto a_noinsert; \
125e32f2f54SBarry Smith     if (a->nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \
126fef13f97SBarry Smith     MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,brow,bcol,rmax,aa,ai,aj,rp,ap,aimax,a->nonew,MatScalar); \
12780c1aa95SSatish Balay     N = nrow++ - 1;  \
12880c1aa95SSatish Balay     /* shift up all the later entries in this row */ \
12980c1aa95SSatish Balay     for (ii=N; ii>=_i; ii--) { \
13080c1aa95SSatish Balay       rp[ii+1] = rp[ii]; \
1313eda8832SBarry Smith       ierr     = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \
13280c1aa95SSatish Balay     } \
1333eda8832SBarry Smith     if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr); }  \
13480c1aa95SSatish Balay     rp[_i]                      = bcol;  \
13580c1aa95SSatish Balay     ap[bs2*_i + bs*cidx + ridx] = value;  \
136ac7a638eSSatish Balay a_noinsert:; \
13780c1aa95SSatish Balay     ailen[brow] = nrow; \
13880c1aa95SSatish Balay   }
13957b952d6SSatish Balay 
140ac7a638eSSatish Balay #define  MatSetValues_SeqBAIJ_B_Private(row,col,value,addv) \
141ac7a638eSSatish Balay   { \
142ac7a638eSSatish Balay     brow = row/bs;  \
143ac7a638eSSatish Balay     rp   = bj + bi[brow]; ap = ba + bs2*bi[brow]; \
144ac7a638eSSatish Balay     rmax = bimax[brow]; nrow = bilen[brow]; \
145ac7a638eSSatish Balay     bcol = col/bs; \
146ac7a638eSSatish Balay     ridx = row % bs; cidx = col % bs; \
147ac7a638eSSatish Balay     low  = 0; high = nrow; \
148ac7a638eSSatish Balay     while (high-low > 3) { \
149ac7a638eSSatish Balay       t = (low+high)/2; \
150ac7a638eSSatish Balay       if (rp[t] > bcol) high = t; \
151ac7a638eSSatish Balay       else              low  = t; \
152ac7a638eSSatish Balay     } \
153ac7a638eSSatish Balay     for (_i=low; _i<high; _i++) { \
154ac7a638eSSatish Balay       if (rp[_i] > bcol) break; \
155ac7a638eSSatish Balay       if (rp[_i] == bcol) { \
156ac7a638eSSatish Balay         bap = ap +  bs2*_i + bs*cidx + ridx; \
157ac7a638eSSatish Balay         if (addv == ADD_VALUES) *bap += value;  \
158ac7a638eSSatish Balay         else                    *bap  = value;  \
159ac7a638eSSatish Balay         goto b_noinsert; \
160ac7a638eSSatish Balay       } \
161ac7a638eSSatish Balay     } \
16289280ab3SLois Curfman McInnes     if (b->nonew == 1) goto b_noinsert; \
163e32f2f54SBarry Smith     if (b->nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \
164fef13f97SBarry Smith     MatSeqXAIJReallocateAIJ(B,b->mbs,bs2,nrow,brow,bcol,rmax,ba,bi,bj,rp,ap,bimax,b->nonew,MatScalar); \
165ac7a638eSSatish Balay     N = nrow++ - 1;  \
166ac7a638eSSatish Balay     /* shift up all the later entries in this row */ \
167ac7a638eSSatish Balay     for (ii=N; ii>=_i; ii--) { \
168ac7a638eSSatish Balay       rp[ii+1] = rp[ii]; \
1693eda8832SBarry Smith       ierr     = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \
170ac7a638eSSatish Balay     } \
1713eda8832SBarry Smith     if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr);}  \
172ac7a638eSSatish Balay     rp[_i]                      = bcol;  \
173ac7a638eSSatish Balay     ap[bs2*_i + bs*cidx + ridx] = value;  \
174ac7a638eSSatish Balay b_noinsert:; \
175ac7a638eSSatish Balay     bilen[brow] = nrow; \
176ac7a638eSSatish Balay   }
177ac7a638eSSatish Balay 
1784a2ae208SSatish Balay #undef __FUNCT__
1794a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_MPIBAIJ"
180b24ad042SBarry Smith PetscErrorCode MatSetValues_MPIBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv)
18157b952d6SSatish Balay {
18257b952d6SSatish Balay   Mat_MPIBAIJ    *baij = (Mat_MPIBAIJ*)mat->data;
18393fea6afSBarry Smith   MatScalar      value;
184ace3abfcSBarry Smith   PetscBool      roworiented = baij->roworiented;
185dfbe8321SBarry Smith   PetscErrorCode ierr;
186b24ad042SBarry Smith   PetscInt       i,j,row,col;
187d0f46423SBarry Smith   PetscInt       rstart_orig=mat->rmap->rstart;
188d0f46423SBarry Smith   PetscInt       rend_orig  =mat->rmap->rend,cstart_orig=mat->cmap->rstart;
189d0f46423SBarry Smith   PetscInt       cend_orig  =mat->cmap->rend,bs=mat->rmap->bs;
19057b952d6SSatish Balay 
191eada6651SSatish Balay   /* Some Variables required in the macro */
19280c1aa95SSatish Balay   Mat         A     = baij->A;
19380c1aa95SSatish Balay   Mat_SeqBAIJ *a    = (Mat_SeqBAIJ*)(A)->data;
194b24ad042SBarry Smith   PetscInt    *aimax=a->imax,*ai=a->i,*ailen=a->ilen,*aj=a->j;
1953eda8832SBarry Smith   MatScalar   *aa   =a->a;
196ac7a638eSSatish Balay 
197ac7a638eSSatish Balay   Mat         B     = baij->B;
198ac7a638eSSatish Balay   Mat_SeqBAIJ *b    = (Mat_SeqBAIJ*)(B)->data;
199b24ad042SBarry Smith   PetscInt    *bimax=b->imax,*bi=b->i,*bilen=b->ilen,*bj=b->j;
2003eda8832SBarry Smith   MatScalar   *ba   =b->a;
201ac7a638eSSatish Balay 
202b24ad042SBarry Smith   PetscInt  *rp,ii,nrow,_i,rmax,N,brow,bcol;
203b24ad042SBarry Smith   PetscInt  low,high,t,ridx,cidx,bs2=a->bs2;
2043eda8832SBarry Smith   MatScalar *ap,*bap;
20580c1aa95SSatish Balay 
206d64ed03dSBarry Smith   PetscFunctionBegin;
20757b952d6SSatish Balay   for (i=0; i<m; i++) {
2085ef9f2a5SBarry Smith     if (im[i] < 0) continue;
2092515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
210e32f2f54SBarry Smith     if (im[i] >= mat->rmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],mat->rmap->N-1);
211639f9d9dSBarry Smith #endif
21257b952d6SSatish Balay     if (im[i] >= rstart_orig && im[i] < rend_orig) {
21357b952d6SSatish Balay       row = im[i] - rstart_orig;
21457b952d6SSatish Balay       for (j=0; j<n; j++) {
21557b952d6SSatish Balay         if (in[j] >= cstart_orig && in[j] < cend_orig) {
21657b952d6SSatish Balay           col = in[j] - cstart_orig;
217db4deed7SKarl Rupp           if (roworiented) value = v[i*n+j];
218db4deed7SKarl Rupp           else             value = v[i+j*m];
219f5e9677aSSatish Balay           MatSetValues_SeqBAIJ_A_Private(row,col,value,addv);
22080c1aa95SSatish Balay           /* ierr = MatSetValues_SeqBAIJ(baij->A,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */
22173959e64SBarry Smith         } else if (in[j] < 0) continue;
2222515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
223660746e0SBarry Smith         else if (in[j] >= mat->cmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",in[j],mat->cmap->N-1);
224639f9d9dSBarry Smith #endif
22557b952d6SSatish Balay         else {
22657b952d6SSatish Balay           if (mat->was_assembled) {
227905e6a2fSBarry Smith             if (!baij->colmap) {
228ab9863d7SBarry Smith               ierr = MatCreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
229905e6a2fSBarry Smith             }
230aa482453SBarry Smith #if defined(PETSC_USE_CTABLE)
2310f5bd95cSBarry Smith             ierr = PetscTableFind(baij->colmap,in[j]/bs + 1,&col);CHKERRQ(ierr);
232bba1ac68SSatish Balay             col  = col - 1;
23348e59246SSatish Balay #else
234bba1ac68SSatish Balay             col = baij->colmap[in[j]/bs] - 1;
23548e59246SSatish Balay #endif
236c9ef50b2SBarry Smith             if (col < 0 && !((Mat_SeqBAIJ*)(baij->B->data))->nonew) {
237ab9863d7SBarry Smith               ierr = MatDisAssemble_MPIBAIJ(mat);CHKERRQ(ierr);
2388295de27SSatish Balay               col  =  in[j];
2399bf004c3SSatish Balay               /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */
2409bf004c3SSatish Balay               B    = baij->B;
2419bf004c3SSatish Balay               b    = (Mat_SeqBAIJ*)(B)->data;
2429bf004c3SSatish Balay               bimax=b->imax;bi=b->i;bilen=b->ilen;bj=b->j;
2439bf004c3SSatish Balay               ba   =b->a;
244c9ef50b2SBarry Smith             } else if (col < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", im[i], in[j]);
245c9ef50b2SBarry Smith             else col += in[j]%bs;
2468295de27SSatish Balay           } else col = in[j];
247db4deed7SKarl Rupp           if (roworiented) value = v[i*n+j];
248db4deed7SKarl Rupp           else             value = v[i+j*m];
24990da58bdSSatish Balay           MatSetValues_SeqBAIJ_B_Private(row,col,value,addv);
25090da58bdSSatish Balay           /* ierr = MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */
25157b952d6SSatish Balay         }
25257b952d6SSatish Balay       }
253d64ed03dSBarry Smith     } else {
2544cb17eb5SBarry Smith       if (mat->nooffprocentries) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Setting off process row %D even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set",im[i]);
25590f02eecSBarry Smith       if (!baij->donotstash) {
2565080c13bSMatthew G Knepley         mat->assembled = PETSC_FALSE;
257ff2fd236SBarry Smith         if (roworiented) {
258b400d20cSBarry Smith           ierr = MatStashValuesRow_Private(&mat->stash,im[i],n,in,v+i*n,PETSC_FALSE);CHKERRQ(ierr);
259ff2fd236SBarry Smith         } else {
260b400d20cSBarry Smith           ierr = MatStashValuesCol_Private(&mat->stash,im[i],n,in,v+i,m,PETSC_FALSE);CHKERRQ(ierr);
26157b952d6SSatish Balay         }
26257b952d6SSatish Balay       }
26357b952d6SSatish Balay     }
26490f02eecSBarry Smith   }
2653a40ed3dSBarry Smith   PetscFunctionReturn(0);
26657b952d6SSatish Balay }
26757b952d6SSatish Balay 
2684a2ae208SSatish Balay #undef __FUNCT__
26997e5c40aSBarry Smith #define __FUNCT__ "MatSetValuesBlocked_MPIBAIJ"
27097e5c40aSBarry Smith PetscErrorCode MatSetValuesBlocked_MPIBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv)
271ab26458aSBarry Smith {
272ab26458aSBarry Smith   Mat_MPIBAIJ       *baij = (Mat_MPIBAIJ*)mat->data;
273dd6ea824SBarry Smith   const PetscScalar *value;
274f15d580aSBarry Smith   MatScalar         *barray     = baij->barray;
275ace3abfcSBarry Smith   PetscBool         roworiented = baij->roworiented;
276dfbe8321SBarry Smith   PetscErrorCode    ierr;
277899cda47SBarry Smith   PetscInt          i,j,ii,jj,row,col,rstart=baij->rstartbs;
278899cda47SBarry Smith   PetscInt          rend=baij->rendbs,cstart=baij->cstartbs,stepval;
279d0f46423SBarry Smith   PetscInt          cend=baij->cendbs,bs=mat->rmap->bs,bs2=baij->bs2;
280ab26458aSBarry Smith 
281b16ae2b1SBarry Smith   PetscFunctionBegin;
28230793edcSSatish Balay   if (!barray) {
283785e854fSJed Brown     ierr         = PetscMalloc1(bs2,&barray);CHKERRQ(ierr);
28482502324SSatish Balay     baij->barray = barray;
28530793edcSSatish Balay   }
28630793edcSSatish Balay 
28726fbe8dcSKarl Rupp   if (roworiented) stepval = (n-1)*bs;
28826fbe8dcSKarl Rupp   else stepval = (m-1)*bs;
28926fbe8dcSKarl Rupp 
290ab26458aSBarry Smith   for (i=0; i<m; i++) {
2915ef9f2a5SBarry Smith     if (im[i] < 0) continue;
2922515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
293e32f2f54SBarry Smith     if (im[i] >= baij->Mbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large, row %D max %D",im[i],baij->Mbs-1);
294ab26458aSBarry Smith #endif
295ab26458aSBarry Smith     if (im[i] >= rstart && im[i] < rend) {
296ab26458aSBarry Smith       row = im[i] - rstart;
297ab26458aSBarry Smith       for (j=0; j<n; j++) {
29815b57d14SSatish Balay         /* If NumCol = 1 then a copy is not required */
29915b57d14SSatish Balay         if ((roworiented) && (n == 1)) {
300f15d580aSBarry Smith           barray = (MatScalar*)v + i*bs2;
30115b57d14SSatish Balay         } else if ((!roworiented) && (m == 1)) {
302f15d580aSBarry Smith           barray = (MatScalar*)v + j*bs2;
30315b57d14SSatish Balay         } else { /* Here a copy is required */
304ab26458aSBarry Smith           if (roworiented) {
30553ef36baSBarry Smith             value = v + (i*(stepval+bs) + j)*bs;
306ab26458aSBarry Smith           } else {
30753ef36baSBarry Smith             value = v + (j*(stepval+bs) + i)*bs;
308abef11f7SSatish Balay           }
30953ef36baSBarry Smith           for (ii=0; ii<bs; ii++,value+=bs+stepval) {
31026fbe8dcSKarl Rupp             for (jj=0; jj<bs; jj++) barray[jj] = value[jj];
31153ef36baSBarry Smith             barray += bs;
31247513183SBarry Smith           }
31330793edcSSatish Balay           barray -= bs2;
31415b57d14SSatish Balay         }
315abef11f7SSatish Balay 
316abef11f7SSatish Balay         if (in[j] >= cstart && in[j] < cend) {
317abef11f7SSatish Balay           col  = in[j] - cstart;
31897e5c40aSBarry Smith           ierr = MatSetValuesBlocked_SeqBAIJ(baij->A,1,&row,1,&col,barray,addv);CHKERRQ(ierr);
31926fbe8dcSKarl Rupp         } else if (in[j] < 0) continue;
3202515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
321cb9801acSJed Brown         else if (in[j] >= baij->Nbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large, col %D max %D",in[j],baij->Nbs-1);
322ab26458aSBarry Smith #endif
323ab26458aSBarry Smith         else {
324ab26458aSBarry Smith           if (mat->was_assembled) {
325ab26458aSBarry Smith             if (!baij->colmap) {
326ab9863d7SBarry Smith               ierr = MatCreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
327ab26458aSBarry Smith             }
328a5eb4965SSatish Balay 
3292515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
330aa482453SBarry Smith #if defined(PETSC_USE_CTABLE)
331b24ad042SBarry Smith             { PetscInt data;
3320f5bd95cSBarry Smith               ierr = PetscTableFind(baij->colmap,in[j]+1,&data);CHKERRQ(ierr);
333e32f2f54SBarry Smith               if ((data - 1) % bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap");
334fa46199cSSatish Balay             }
33548e59246SSatish Balay #else
336e32f2f54SBarry Smith             if ((baij->colmap[in[j]] - 1) % bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap");
337a5eb4965SSatish Balay #endif
33848e59246SSatish Balay #endif
339aa482453SBarry Smith #if defined(PETSC_USE_CTABLE)
3400f5bd95cSBarry Smith             ierr = PetscTableFind(baij->colmap,in[j]+1,&col);CHKERRQ(ierr);
341fa46199cSSatish Balay             col  = (col - 1)/bs;
34248e59246SSatish Balay #else
343a5eb4965SSatish Balay             col = (baij->colmap[in[j]] - 1)/bs;
34448e59246SSatish Balay #endif
3450e9bae81SBarry Smith             if (col < 0 && !((Mat_SeqBAIJ*)(baij->B->data))->nonew) {
346ab9863d7SBarry Smith               ierr = MatDisAssemble_MPIBAIJ(mat);CHKERRQ(ierr);
347ab26458aSBarry Smith               col  =  in[j];
3480e9bae81SBarry Smith             } else if (col < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", bs*im[i], bs*in[j]);
349db4deed7SKarl Rupp           } else col = in[j];
35097e5c40aSBarry Smith           ierr = MatSetValuesBlocked_SeqBAIJ(baij->B,1,&row,1,&col,barray,addv);CHKERRQ(ierr);
351ab26458aSBarry Smith         }
352ab26458aSBarry Smith       }
353d64ed03dSBarry Smith     } else {
3544cb17eb5SBarry Smith       if (mat->nooffprocentries) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Setting off process row %D even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set",im[i]);
355ab26458aSBarry Smith       if (!baij->donotstash) {
356ff2fd236SBarry Smith         if (roworiented) {
3576fa18ffdSBarry Smith           ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
358ff2fd236SBarry Smith         } else {
3596fa18ffdSBarry Smith           ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
360ff2fd236SBarry Smith         }
361abef11f7SSatish Balay       }
362ab26458aSBarry Smith     }
363ab26458aSBarry Smith   }
3643a40ed3dSBarry Smith   PetscFunctionReturn(0);
365ab26458aSBarry Smith }
3666fa18ffdSBarry Smith 
3670bdbc534SSatish Balay #define HASH_KEY 0.6180339887
368b24ad042SBarry Smith #define HASH(size,key,tmp) (tmp = (key)*HASH_KEY,(PetscInt)((size)*(tmp-(PetscInt)tmp)))
369b24ad042SBarry Smith /* #define HASH(size,key) ((PetscInt)((size)*fmod(((key)*HASH_KEY),1))) */
370b24ad042SBarry Smith /* #define HASH(size,key,tmp) ((PetscInt)((size)*fmod(((key)*HASH_KEY),1))) */
3714a2ae208SSatish Balay #undef __FUNCT__
37297e5c40aSBarry Smith #define __FUNCT__ "MatSetValues_MPIBAIJ_HT"
37397e5c40aSBarry Smith PetscErrorCode MatSetValues_MPIBAIJ_HT(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv)
3740bdbc534SSatish Balay {
3750bdbc534SSatish Balay   Mat_MPIBAIJ    *baij       = (Mat_MPIBAIJ*)mat->data;
376ace3abfcSBarry Smith   PetscBool      roworiented = baij->roworiented;
377dfbe8321SBarry Smith   PetscErrorCode ierr;
378b24ad042SBarry Smith   PetscInt       i,j,row,col;
379d0f46423SBarry Smith   PetscInt       rstart_orig=mat->rmap->rstart;
380d0f46423SBarry Smith   PetscInt       rend_orig  =mat->rmap->rend,Nbs=baij->Nbs;
381d0f46423SBarry Smith   PetscInt       h1,key,size=baij->ht_size,bs=mat->rmap->bs,*HT=baij->ht,idx;
382329f5518SBarry Smith   PetscReal      tmp;
3833eda8832SBarry Smith   MatScalar      **HD = baij->hd,value;
3842515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
385b24ad042SBarry Smith   PetscInt total_ct=baij->ht_total_ct,insert_ct=baij->ht_insert_ct;
3864a15367fSSatish Balay #endif
3870bdbc534SSatish Balay 
3880bdbc534SSatish Balay   PetscFunctionBegin;
3890bdbc534SSatish Balay   for (i=0; i<m; i++) {
3902515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
391e32f2f54SBarry Smith     if (im[i] < 0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative row");
392e32f2f54SBarry Smith     if (im[i] >= mat->rmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],mat->rmap->N-1);
3930bdbc534SSatish Balay #endif
3940bdbc534SSatish Balay     row = im[i];
395c2760754SSatish Balay     if (row >= rstart_orig && row < rend_orig) {
3960bdbc534SSatish Balay       for (j=0; j<n; j++) {
3970bdbc534SSatish Balay         col = in[j];
398db4deed7SKarl Rupp         if (roworiented) value = v[i*n+j];
399db4deed7SKarl Rupp         else             value = v[i+j*m];
400b24ad042SBarry Smith         /* Look up PetscInto the Hash Table */
401c2760754SSatish Balay         key = (row/bs)*Nbs+(col/bs)+1;
402c2760754SSatish Balay         h1  = HASH(size,key,tmp);
4030bdbc534SSatish Balay 
404c2760754SSatish Balay 
405c2760754SSatish Balay         idx = h1;
4062515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
407187ce0cbSSatish Balay         insert_ct++;
408187ce0cbSSatish Balay         total_ct++;
409187ce0cbSSatish Balay         if (HT[idx] != key) {
410187ce0cbSSatish Balay           for (idx=h1; (idx<size) && (HT[idx]!=key); idx++,total_ct++) ;
411187ce0cbSSatish Balay           if (idx == size) {
412187ce0cbSSatish Balay             for (idx=0; (idx<h1) && (HT[idx]!=key); idx++,total_ct++) ;
413f23aa3ddSBarry Smith             if (idx == h1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"(%D,%D) has no entry in the hash table", row, col);
414187ce0cbSSatish Balay           }
415187ce0cbSSatish Balay         }
416187ce0cbSSatish Balay #else
417c2760754SSatish Balay         if (HT[idx] != key) {
418c2760754SSatish Balay           for (idx=h1; (idx<size) && (HT[idx]!=key); idx++) ;
419c2760754SSatish Balay           if (idx == size) {
420c2760754SSatish Balay             for (idx=0; (idx<h1) && (HT[idx]!=key); idx++) ;
421f23aa3ddSBarry Smith             if (idx == h1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"(%D,%D) has no entry in the hash table", row, col);
422c2760754SSatish Balay           }
423c2760754SSatish Balay         }
424187ce0cbSSatish Balay #endif
425c2760754SSatish Balay         /* A HASH table entry is found, so insert the values at the correct address */
426c2760754SSatish Balay         if (addv == ADD_VALUES) *(HD[idx]+ (col % bs)*bs + (row % bs)) += value;
427c2760754SSatish Balay         else                    *(HD[idx]+ (col % bs)*bs + (row % bs))  = value;
4280bdbc534SSatish Balay       }
42926fbe8dcSKarl Rupp     } else if (!baij->donotstash) {
430ff2fd236SBarry Smith       if (roworiented) {
431b400d20cSBarry Smith         ierr = MatStashValuesRow_Private(&mat->stash,im[i],n,in,v+i*n,PETSC_FALSE);CHKERRQ(ierr);
432ff2fd236SBarry Smith       } else {
433b400d20cSBarry Smith         ierr = MatStashValuesCol_Private(&mat->stash,im[i],n,in,v+i,m,PETSC_FALSE);CHKERRQ(ierr);
4340bdbc534SSatish Balay       }
4350bdbc534SSatish Balay     }
4360bdbc534SSatish Balay   }
4372515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
438187ce0cbSSatish Balay   baij->ht_total_ct  = total_ct;
439187ce0cbSSatish Balay   baij->ht_insert_ct = insert_ct;
440187ce0cbSSatish Balay #endif
4410bdbc534SSatish Balay   PetscFunctionReturn(0);
4420bdbc534SSatish Balay }
4430bdbc534SSatish Balay 
4444a2ae208SSatish Balay #undef __FUNCT__
44597e5c40aSBarry Smith #define __FUNCT__ "MatSetValuesBlocked_MPIBAIJ_HT"
44697e5c40aSBarry Smith PetscErrorCode MatSetValuesBlocked_MPIBAIJ_HT(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv)
4470bdbc534SSatish Balay {
4480bdbc534SSatish Balay   Mat_MPIBAIJ       *baij       = (Mat_MPIBAIJ*)mat->data;
449ace3abfcSBarry Smith   PetscBool         roworiented = baij->roworiented;
450dfbe8321SBarry Smith   PetscErrorCode    ierr;
451b24ad042SBarry Smith   PetscInt          i,j,ii,jj,row,col;
452899cda47SBarry Smith   PetscInt          rstart=baij->rstartbs;
453d0f46423SBarry Smith   PetscInt          rend  =mat->rmap->rend,stepval,bs=mat->rmap->bs,bs2=baij->bs2,nbs2=n*bs2;
454b24ad042SBarry Smith   PetscInt          h1,key,size=baij->ht_size,idx,*HT=baij->ht,Nbs=baij->Nbs;
455329f5518SBarry Smith   PetscReal         tmp;
4563eda8832SBarry Smith   MatScalar         **HD = baij->hd,*baij_a;
457dd6ea824SBarry Smith   const PetscScalar *v_t,*value;
4582515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
459b24ad042SBarry Smith   PetscInt total_ct=baij->ht_total_ct,insert_ct=baij->ht_insert_ct;
4604a15367fSSatish Balay #endif
4610bdbc534SSatish Balay 
462d0a41580SSatish Balay   PetscFunctionBegin;
46326fbe8dcSKarl Rupp   if (roworiented) stepval = (n-1)*bs;
46426fbe8dcSKarl Rupp   else stepval = (m-1)*bs;
46526fbe8dcSKarl Rupp 
4660bdbc534SSatish Balay   for (i=0; i<m; i++) {
4672515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
468e32f2f54SBarry Smith     if (im[i] < 0) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %D",im[i]);
469e32f2f54SBarry Smith     if (im[i] >= baij->Mbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],baij->Mbs-1);
4700bdbc534SSatish Balay #endif
4710bdbc534SSatish Balay     row = im[i];
472ab715e2cSSatish Balay     v_t = v + i*nbs2;
473c2760754SSatish Balay     if (row >= rstart && row < rend) {
4740bdbc534SSatish Balay       for (j=0; j<n; j++) {
4750bdbc534SSatish Balay         col = in[j];
4760bdbc534SSatish Balay 
4770bdbc534SSatish Balay         /* Look up into the Hash Table */
478c2760754SSatish Balay         key = row*Nbs+col+1;
479c2760754SSatish Balay         h1  = HASH(size,key,tmp);
4800bdbc534SSatish Balay 
481c2760754SSatish Balay         idx = h1;
4822515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
483187ce0cbSSatish Balay         total_ct++;
484187ce0cbSSatish Balay         insert_ct++;
485187ce0cbSSatish Balay         if (HT[idx] != key) {
486187ce0cbSSatish Balay           for (idx=h1; (idx<size) && (HT[idx]!=key); idx++,total_ct++) ;
487187ce0cbSSatish Balay           if (idx == size) {
488187ce0cbSSatish Balay             for (idx=0; (idx<h1) && (HT[idx]!=key); idx++,total_ct++) ;
489f23aa3ddSBarry Smith             if (idx == h1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"(%D,%D) has no entry in the hash table", row, col);
490187ce0cbSSatish Balay           }
491187ce0cbSSatish Balay         }
492187ce0cbSSatish Balay #else
493c2760754SSatish Balay         if (HT[idx] != key) {
494c2760754SSatish Balay           for (idx=h1; (idx<size) && (HT[idx]!=key); idx++) ;
495c2760754SSatish Balay           if (idx == size) {
496c2760754SSatish Balay             for (idx=0; (idx<h1) && (HT[idx]!=key); idx++) ;
497f23aa3ddSBarry Smith             if (idx == h1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"(%D,%D) has no entry in the hash table", row, col);
498c2760754SSatish Balay           }
499c2760754SSatish Balay         }
500187ce0cbSSatish Balay #endif
501c2760754SSatish Balay         baij_a = HD[idx];
5020bdbc534SSatish Balay         if (roworiented) {
503c2760754SSatish Balay           /*value = v + i*(stepval+bs)*bs + j*bs;*/
504187ce0cbSSatish Balay           /* value = v + (i*(stepval+bs)+j)*bs; */
505187ce0cbSSatish Balay           value = v_t;
506187ce0cbSSatish Balay           v_t  += bs;
507fef45726SSatish Balay           if (addv == ADD_VALUES) {
508c2760754SSatish Balay             for (ii=0; ii<bs; ii++,value+=stepval) {
509c2760754SSatish Balay               for (jj=ii; jj<bs2; jj+=bs) {
510fef45726SSatish Balay                 baij_a[jj] += *value++;
511b4cc0f5aSSatish Balay               }
512b4cc0f5aSSatish Balay             }
513fef45726SSatish Balay           } else {
514c2760754SSatish Balay             for (ii=0; ii<bs; ii++,value+=stepval) {
515c2760754SSatish Balay               for (jj=ii; jj<bs2; jj+=bs) {
516fef45726SSatish Balay                 baij_a[jj] = *value++;
517fef45726SSatish Balay               }
518fef45726SSatish Balay             }
519fef45726SSatish Balay           }
5200bdbc534SSatish Balay         } else {
5210bdbc534SSatish Balay           value = v + j*(stepval+bs)*bs + i*bs;
522fef45726SSatish Balay           if (addv == ADD_VALUES) {
523b4cc0f5aSSatish Balay             for (ii=0; ii<bs; ii++,value+=stepval,baij_a+=bs) {
5240bdbc534SSatish Balay               for (jj=0; jj<bs; jj++) {
525fef45726SSatish Balay                 baij_a[jj] += *value++;
526fef45726SSatish Balay               }
527fef45726SSatish Balay             }
528fef45726SSatish Balay           } else {
529fef45726SSatish Balay             for (ii=0; ii<bs; ii++,value+=stepval,baij_a+=bs) {
530fef45726SSatish Balay               for (jj=0; jj<bs; jj++) {
531fef45726SSatish Balay                 baij_a[jj] = *value++;
532fef45726SSatish Balay               }
533b4cc0f5aSSatish Balay             }
5340bdbc534SSatish Balay           }
5350bdbc534SSatish Balay         }
5360bdbc534SSatish Balay       }
5370bdbc534SSatish Balay     } else {
5380bdbc534SSatish Balay       if (!baij->donotstash) {
5390bdbc534SSatish Balay         if (roworiented) {
5408798bf22SSatish Balay           ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
5410bdbc534SSatish Balay         } else {
5428798bf22SSatish Balay           ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
5430bdbc534SSatish Balay         }
5440bdbc534SSatish Balay       }
5450bdbc534SSatish Balay     }
5460bdbc534SSatish Balay   }
5472515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
548187ce0cbSSatish Balay   baij->ht_total_ct  = total_ct;
549187ce0cbSSatish Balay   baij->ht_insert_ct = insert_ct;
550187ce0cbSSatish Balay #endif
5510bdbc534SSatish Balay   PetscFunctionReturn(0);
5520bdbc534SSatish Balay }
553133cdb44SSatish Balay 
5544a2ae208SSatish Balay #undef __FUNCT__
5554a2ae208SSatish Balay #define __FUNCT__ "MatGetValues_MPIBAIJ"
556b24ad042SBarry Smith PetscErrorCode MatGetValues_MPIBAIJ(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[])
557d6de1c52SSatish Balay {
558d6de1c52SSatish Balay   Mat_MPIBAIJ    *baij = (Mat_MPIBAIJ*)mat->data;
5596849ba73SBarry Smith   PetscErrorCode ierr;
560d0f46423SBarry Smith   PetscInt       bs       = mat->rmap->bs,i,j,bsrstart = mat->rmap->rstart,bsrend = mat->rmap->rend;
561d0f46423SBarry Smith   PetscInt       bscstart = mat->cmap->rstart,bscend = mat->cmap->rend,row,col,data;
562d6de1c52SSatish Balay 
563133cdb44SSatish Balay   PetscFunctionBegin;
564d6de1c52SSatish Balay   for (i=0; i<m; i++) {
565e32f2f54SBarry Smith     if (idxm[i] < 0) continue; /* SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %D",idxm[i]);*/
566e32f2f54SBarry Smith     if (idxm[i] >= mat->rmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",idxm[i],mat->rmap->N-1);
567d6de1c52SSatish Balay     if (idxm[i] >= bsrstart && idxm[i] < bsrend) {
568d6de1c52SSatish Balay       row = idxm[i] - bsrstart;
569d6de1c52SSatish Balay       for (j=0; j<n; j++) {
570e32f2f54SBarry Smith         if (idxn[j] < 0) continue; /* SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative column: %D",idxn[j]); */
571e32f2f54SBarry Smith         if (idxn[j] >= mat->cmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",idxn[j],mat->cmap->N-1);
572d6de1c52SSatish Balay         if (idxn[j] >= bscstart && idxn[j] < bscend) {
573d6de1c52SSatish Balay           col  = idxn[j] - bscstart;
57498dd23e9SBarry Smith           ierr = MatGetValues_SeqBAIJ(baij->A,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr);
575d64ed03dSBarry Smith         } else {
576905e6a2fSBarry Smith           if (!baij->colmap) {
577ab9863d7SBarry Smith             ierr = MatCreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
578905e6a2fSBarry Smith           }
579aa482453SBarry Smith #if defined(PETSC_USE_CTABLE)
5800f5bd95cSBarry Smith           ierr = PetscTableFind(baij->colmap,idxn[j]/bs+1,&data);CHKERRQ(ierr);
581fa46199cSSatish Balay           data--;
58248e59246SSatish Balay #else
58348e59246SSatish Balay           data = baij->colmap[idxn[j]/bs]-1;
58448e59246SSatish Balay #endif
58548e59246SSatish Balay           if ((data < 0) || (baij->garray[data/bs] != idxn[j]/bs)) *(v+i*n+j) = 0.0;
586d9d09a02SSatish Balay           else {
58748e59246SSatish Balay             col  = data + idxn[j]%bs;
58898dd23e9SBarry Smith             ierr = MatGetValues_SeqBAIJ(baij->B,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr);
589d6de1c52SSatish Balay           }
590d6de1c52SSatish Balay         }
591d6de1c52SSatish Balay       }
592f23aa3ddSBarry Smith     } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local values currently supported");
593d6de1c52SSatish Balay   }
5943a40ed3dSBarry Smith   PetscFunctionReturn(0);
595d6de1c52SSatish Balay }
596d6de1c52SSatish Balay 
5974a2ae208SSatish Balay #undef __FUNCT__
5984a2ae208SSatish Balay #define __FUNCT__ "MatNorm_MPIBAIJ"
599dfbe8321SBarry Smith PetscErrorCode MatNorm_MPIBAIJ(Mat mat,NormType type,PetscReal *nrm)
600d6de1c52SSatish Balay {
601d6de1c52SSatish Balay   Mat_MPIBAIJ    *baij = (Mat_MPIBAIJ*)mat->data;
602d6de1c52SSatish Balay   Mat_SeqBAIJ    *amat = (Mat_SeqBAIJ*)baij->A->data,*bmat = (Mat_SeqBAIJ*)baij->B->data;
603dfbe8321SBarry Smith   PetscErrorCode ierr;
604d0f46423SBarry Smith   PetscInt       i,j,bs2=baij->bs2,bs=baij->A->rmap->bs,nz,row,col;
605329f5518SBarry Smith   PetscReal      sum = 0.0;
6063eda8832SBarry Smith   MatScalar      *v;
607d6de1c52SSatish Balay 
608d64ed03dSBarry Smith   PetscFunctionBegin;
609d6de1c52SSatish Balay   if (baij->size == 1) {
610064f8208SBarry Smith     ierr =  MatNorm(baij->A,type,nrm);CHKERRQ(ierr);
611d6de1c52SSatish Balay   } else {
612d6de1c52SSatish Balay     if (type == NORM_FROBENIUS) {
613d6de1c52SSatish Balay       v  = amat->a;
6148a62d963SHong Zhang       nz = amat->nz*bs2;
6158a62d963SHong Zhang       for (i=0; i<nz; i++) {
616329f5518SBarry Smith         sum += PetscRealPart(PetscConj(*v)*(*v)); v++;
617d6de1c52SSatish Balay       }
618d6de1c52SSatish Balay       v  = bmat->a;
6198a62d963SHong Zhang       nz = bmat->nz*bs2;
6208a62d963SHong Zhang       for (i=0; i<nz; i++) {
621329f5518SBarry Smith         sum += PetscRealPart(PetscConj(*v)*(*v)); v++;
622d6de1c52SSatish Balay       }
623ce94432eSBarry Smith       ierr = MPI_Allreduce(&sum,nrm,1,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
6248f1a2a5eSBarry Smith       *nrm = PetscSqrtReal(*nrm);
6258a62d963SHong Zhang     } else if (type == NORM_1) { /* max column sum */
6268a62d963SHong Zhang       PetscReal *tmp,*tmp2;
627899cda47SBarry Smith       PetscInt  *jj,*garray=baij->garray,cstart=baij->rstartbs;
628dcca6d9dSJed Brown       ierr = PetscMalloc2(mat->cmap->N,&tmp,mat->cmap->N,&tmp2);CHKERRQ(ierr);
629d0f46423SBarry Smith       ierr = PetscMemzero(tmp,mat->cmap->N*sizeof(PetscReal));CHKERRQ(ierr);
6308a62d963SHong Zhang       v    = amat->a; jj = amat->j;
6318a62d963SHong Zhang       for (i=0; i<amat->nz; i++) {
6328a62d963SHong Zhang         for (j=0; j<bs; j++) {
6338a62d963SHong Zhang           col = bs*(cstart + *jj) + j; /* column index */
6348a62d963SHong Zhang           for (row=0; row<bs; row++) {
6358a62d963SHong Zhang             tmp[col] += PetscAbsScalar(*v);  v++;
6368a62d963SHong Zhang           }
6378a62d963SHong Zhang         }
6388a62d963SHong Zhang         jj++;
6398a62d963SHong Zhang       }
6408a62d963SHong Zhang       v = bmat->a; jj = bmat->j;
6418a62d963SHong Zhang       for (i=0; i<bmat->nz; i++) {
6428a62d963SHong Zhang         for (j=0; j<bs; j++) {
6438a62d963SHong Zhang           col = bs*garray[*jj] + j;
6448a62d963SHong Zhang           for (row=0; row<bs; row++) {
6458a62d963SHong Zhang             tmp[col] += PetscAbsScalar(*v); v++;
6468a62d963SHong Zhang           }
6478a62d963SHong Zhang         }
6488a62d963SHong Zhang         jj++;
6498a62d963SHong Zhang       }
650ce94432eSBarry Smith       ierr = MPI_Allreduce(tmp,tmp2,mat->cmap->N,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
6518a62d963SHong Zhang       *nrm = 0.0;
652d0f46423SBarry Smith       for (j=0; j<mat->cmap->N; j++) {
6538a62d963SHong Zhang         if (tmp2[j] > *nrm) *nrm = tmp2[j];
6548a62d963SHong Zhang       }
655fca92195SBarry Smith       ierr = PetscFree2(tmp,tmp2);CHKERRQ(ierr);
6568a62d963SHong Zhang     } else if (type == NORM_INFINITY) { /* max row sum */
657577dd1f9SKris Buschelman       PetscReal *sums;
658785e854fSJed Brown       ierr = PetscMalloc1(bs,&sums);CHKERRQ(ierr);
6598a62d963SHong Zhang       sum  = 0.0;
6608a62d963SHong Zhang       for (j=0; j<amat->mbs; j++) {
6618a62d963SHong Zhang         for (row=0; row<bs; row++) sums[row] = 0.0;
6628a62d963SHong Zhang         v  = amat->a + bs2*amat->i[j];
6638a62d963SHong Zhang         nz = amat->i[j+1]-amat->i[j];
6648a62d963SHong Zhang         for (i=0; i<nz; i++) {
6658a62d963SHong Zhang           for (col=0; col<bs; col++) {
6668a62d963SHong Zhang             for (row=0; row<bs; row++) {
6678a62d963SHong Zhang               sums[row] += PetscAbsScalar(*v); v++;
6688a62d963SHong Zhang             }
6698a62d963SHong Zhang           }
6708a62d963SHong Zhang         }
6718a62d963SHong Zhang         v  = bmat->a + bs2*bmat->i[j];
6728a62d963SHong Zhang         nz = bmat->i[j+1]-bmat->i[j];
6738a62d963SHong Zhang         for (i=0; i<nz; i++) {
6748a62d963SHong Zhang           for (col=0; col<bs; col++) {
6758a62d963SHong Zhang             for (row=0; row<bs; row++) {
6768a62d963SHong Zhang               sums[row] += PetscAbsScalar(*v); v++;
6778a62d963SHong Zhang             }
6788a62d963SHong Zhang           }
6798a62d963SHong Zhang         }
6808a62d963SHong Zhang         for (row=0; row<bs; row++) {
6818a62d963SHong Zhang           if (sums[row] > sum) sum = sums[row];
6828a62d963SHong Zhang         }
6838a62d963SHong Zhang       }
684ce94432eSBarry Smith       ierr = MPI_Allreduce(&sum,nrm,1,MPIU_REAL,MPIU_MAX,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
685577dd1f9SKris Buschelman       ierr = PetscFree(sums);CHKERRQ(ierr);
686ce94432eSBarry Smith     } else SETERRQ(PetscObjectComm((PetscObject)mat),PETSC_ERR_SUP,"No support for this norm yet");
687d64ed03dSBarry Smith   }
6883a40ed3dSBarry Smith   PetscFunctionReturn(0);
689d6de1c52SSatish Balay }
69057b952d6SSatish Balay 
691fef45726SSatish Balay /*
692fef45726SSatish Balay   Creates the hash table, and sets the table
693fef45726SSatish Balay   This table is created only once.
694fef45726SSatish Balay   If new entried need to be added to the matrix
695fef45726SSatish Balay   then the hash table has to be destroyed and
696fef45726SSatish Balay   recreated.
697fef45726SSatish Balay */
6984a2ae208SSatish Balay #undef __FUNCT__
6994a2ae208SSatish Balay #define __FUNCT__ "MatCreateHashTable_MPIBAIJ_Private"
700dfbe8321SBarry Smith PetscErrorCode MatCreateHashTable_MPIBAIJ_Private(Mat mat,PetscReal factor)
701596b8d2eSBarry Smith {
702596b8d2eSBarry Smith   Mat_MPIBAIJ    *baij = (Mat_MPIBAIJ*)mat->data;
703596b8d2eSBarry Smith   Mat            A     = baij->A,B=baij->B;
704596b8d2eSBarry Smith   Mat_SeqBAIJ    *a    = (Mat_SeqBAIJ*)A->data,*b=(Mat_SeqBAIJ*)B->data;
705b24ad042SBarry Smith   PetscInt       i,j,k,nz=a->nz+b->nz,h1,*ai=a->i,*aj=a->j,*bi=b->i,*bj=b->j;
7066849ba73SBarry Smith   PetscErrorCode ierr;
707fca92195SBarry Smith   PetscInt       ht_size,bs2=baij->bs2,rstart=baij->rstartbs;
708899cda47SBarry Smith   PetscInt       cstart=baij->cstartbs,*garray=baij->garray,row,col,Nbs=baij->Nbs;
709b24ad042SBarry Smith   PetscInt       *HT,key;
7103eda8832SBarry Smith   MatScalar      **HD;
711329f5518SBarry Smith   PetscReal      tmp;
7126cf91177SBarry Smith #if defined(PETSC_USE_INFO)
713b24ad042SBarry Smith   PetscInt ct=0,max=0;
7144a15367fSSatish Balay #endif
715fef45726SSatish Balay 
716d64ed03dSBarry Smith   PetscFunctionBegin;
717fca92195SBarry Smith   if (baij->ht) PetscFunctionReturn(0);
718fef45726SSatish Balay 
719fca92195SBarry Smith   baij->ht_size = (PetscInt)(factor*nz);
720fca92195SBarry Smith   ht_size       = baij->ht_size;
7210bdbc534SSatish Balay 
722fef45726SSatish Balay   /* Allocate Memory for Hash Table */
7231795a4d1SJed Brown   ierr = PetscCalloc2(ht_size,&baij->hd,ht_size,&baij->ht);CHKERRQ(ierr);
724b9e4cc15SSatish Balay   HD   = baij->hd;
725a07cd24cSSatish Balay   HT   = baij->ht;
726b9e4cc15SSatish Balay 
727596b8d2eSBarry Smith   /* Loop Over A */
7280bdbc534SSatish Balay   for (i=0; i<a->mbs; i++) {
729596b8d2eSBarry Smith     for (j=ai[i]; j<ai[i+1]; j++) {
7300bdbc534SSatish Balay       row = i+rstart;
7310bdbc534SSatish Balay       col = aj[j]+cstart;
732596b8d2eSBarry Smith 
733187ce0cbSSatish Balay       key = row*Nbs + col + 1;
734fca92195SBarry Smith       h1  = HASH(ht_size,key,tmp);
735fca92195SBarry Smith       for (k=0; k<ht_size; k++) {
736fca92195SBarry Smith         if (!HT[(h1+k)%ht_size]) {
737fca92195SBarry Smith           HT[(h1+k)%ht_size] = key;
738fca92195SBarry Smith           HD[(h1+k)%ht_size] = a->a + j*bs2;
739596b8d2eSBarry Smith           break;
7406cf91177SBarry Smith #if defined(PETSC_USE_INFO)
741187ce0cbSSatish Balay         } else {
742187ce0cbSSatish Balay           ct++;
743187ce0cbSSatish Balay #endif
744596b8d2eSBarry Smith         }
745187ce0cbSSatish Balay       }
7466cf91177SBarry Smith #if defined(PETSC_USE_INFO)
747187ce0cbSSatish Balay       if (k> max) max = k;
748187ce0cbSSatish Balay #endif
749596b8d2eSBarry Smith     }
750596b8d2eSBarry Smith   }
751596b8d2eSBarry Smith   /* Loop Over B */
7520bdbc534SSatish Balay   for (i=0; i<b->mbs; i++) {
753596b8d2eSBarry Smith     for (j=bi[i]; j<bi[i+1]; j++) {
7540bdbc534SSatish Balay       row = i+rstart;
7550bdbc534SSatish Balay       col = garray[bj[j]];
756187ce0cbSSatish Balay       key = row*Nbs + col + 1;
757fca92195SBarry Smith       h1  = HASH(ht_size,key,tmp);
758fca92195SBarry Smith       for (k=0; k<ht_size; k++) {
759fca92195SBarry Smith         if (!HT[(h1+k)%ht_size]) {
760fca92195SBarry Smith           HT[(h1+k)%ht_size] = key;
761fca92195SBarry Smith           HD[(h1+k)%ht_size] = b->a + j*bs2;
762596b8d2eSBarry Smith           break;
7636cf91177SBarry Smith #if defined(PETSC_USE_INFO)
764187ce0cbSSatish Balay         } else {
765187ce0cbSSatish Balay           ct++;
766187ce0cbSSatish Balay #endif
767596b8d2eSBarry Smith         }
768187ce0cbSSatish Balay       }
7696cf91177SBarry Smith #if defined(PETSC_USE_INFO)
770187ce0cbSSatish Balay       if (k> max) max = k;
771187ce0cbSSatish Balay #endif
772596b8d2eSBarry Smith     }
773596b8d2eSBarry Smith   }
774596b8d2eSBarry Smith 
775596b8d2eSBarry Smith   /* Print Summary */
7766cf91177SBarry Smith #if defined(PETSC_USE_INFO)
777fca92195SBarry Smith   for (i=0,j=0; i<ht_size; i++) {
77826fbe8dcSKarl Rupp     if (HT[i]) j++;
779c38d4ed2SBarry Smith   }
7801e2582c4SBarry Smith   ierr = PetscInfo2(mat,"Average Search = %5.2f,max search = %D\n",(!j)? 0.0:((PetscReal)(ct+j))/j,max);CHKERRQ(ierr);
781187ce0cbSSatish Balay #endif
7823a40ed3dSBarry Smith   PetscFunctionReturn(0);
783596b8d2eSBarry Smith }
78457b952d6SSatish Balay 
7854a2ae208SSatish Balay #undef __FUNCT__
7864a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyBegin_MPIBAIJ"
787dfbe8321SBarry Smith PetscErrorCode MatAssemblyBegin_MPIBAIJ(Mat mat,MatAssemblyType mode)
788bbb85fb3SSatish Balay {
789bbb85fb3SSatish Balay   Mat_MPIBAIJ    *baij = (Mat_MPIBAIJ*)mat->data;
790dfbe8321SBarry Smith   PetscErrorCode ierr;
791b24ad042SBarry Smith   PetscInt       nstash,reallocs;
792bbb85fb3SSatish Balay 
793bbb85fb3SSatish Balay   PetscFunctionBegin;
79426fbe8dcSKarl Rupp   if (baij->donotstash || mat->nooffprocentries) PetscFunctionReturn(0);
795bbb85fb3SSatish Balay 
796d0f46423SBarry Smith   ierr = MatStashScatterBegin_Private(mat,&mat->stash,mat->rmap->range);CHKERRQ(ierr);
7971e2582c4SBarry Smith   ierr = MatStashScatterBegin_Private(mat,&mat->bstash,baij->rangebs);CHKERRQ(ierr);
7988798bf22SSatish Balay   ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr);
7991e2582c4SBarry Smith   ierr = PetscInfo2(mat,"Stash has %D entries,uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr);
80046680499SSatish Balay   ierr = MatStashGetInfo_Private(&mat->bstash,&nstash,&reallocs);CHKERRQ(ierr);
8011e2582c4SBarry Smith   ierr = PetscInfo2(mat,"Block-Stash has %D entries, uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr);
802bbb85fb3SSatish Balay   PetscFunctionReturn(0);
803bbb85fb3SSatish Balay }
804bbb85fb3SSatish Balay 
8054a2ae208SSatish Balay #undef __FUNCT__
8064a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyEnd_MPIBAIJ"
807dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_MPIBAIJ(Mat mat,MatAssemblyType mode)
808bbb85fb3SSatish Balay {
809bbb85fb3SSatish Balay   Mat_MPIBAIJ    *baij=(Mat_MPIBAIJ*)mat->data;
81091c97fd4SSatish Balay   Mat_SeqBAIJ    *a   =(Mat_SeqBAIJ*)baij->A->data;
8116849ba73SBarry Smith   PetscErrorCode ierr;
812b24ad042SBarry Smith   PetscInt       i,j,rstart,ncols,flg,bs2=baij->bs2;
813e44c0bd4SBarry Smith   PetscInt       *row,*col;
814ace3abfcSBarry Smith   PetscBool      r1,r2,r3,other_disassembled;
8153eda8832SBarry Smith   MatScalar      *val;
816b24ad042SBarry Smith   PetscMPIInt    n;
817bbb85fb3SSatish Balay 
818bbb85fb3SSatish Balay   PetscFunctionBegin;
8195fd66863SKarl Rupp   /* do not use 'b=(Mat_SeqBAIJ*)baij->B->data' as B can be reset in disassembly */
8204cb17eb5SBarry Smith   if (!baij->donotstash && !mat->nooffprocentries) {
821a2d1c673SSatish Balay     while (1) {
8228798bf22SSatish Balay       ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr);
823a2d1c673SSatish Balay       if (!flg) break;
824a2d1c673SSatish Balay 
825bbb85fb3SSatish Balay       for (i=0; i<n;) {
826bbb85fb3SSatish Balay         /* Now identify the consecutive vals belonging to the same row */
82726fbe8dcSKarl Rupp         for (j=i,rstart=row[j]; j<n; j++) {
82826fbe8dcSKarl Rupp           if (row[j] != rstart) break;
82926fbe8dcSKarl Rupp         }
830bbb85fb3SSatish Balay         if (j < n) ncols = j-i;
831bbb85fb3SSatish Balay         else       ncols = n-i;
832bbb85fb3SSatish Balay         /* Now assemble all these values with a single function call */
833*4b4eb8d3SJed Brown         ierr = MatSetValues_MPIBAIJ(mat,1,row+i,ncols,col+i,val+i,mat->insertmode);CHKERRQ(ierr);
834bbb85fb3SSatish Balay         i    = j;
835bbb85fb3SSatish Balay       }
836bbb85fb3SSatish Balay     }
8378798bf22SSatish Balay     ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr);
838a2d1c673SSatish Balay     /* Now process the block-stash. Since the values are stashed column-oriented,
839a2d1c673SSatish Balay        set the roworiented flag to column oriented, and after MatSetValues()
840a2d1c673SSatish Balay        restore the original flags */
841a2d1c673SSatish Balay     r1 = baij->roworiented;
842a2d1c673SSatish Balay     r2 = a->roworiented;
84391c97fd4SSatish Balay     r3 = ((Mat_SeqBAIJ*)baij->B->data)->roworiented;
84426fbe8dcSKarl Rupp 
8457c922b88SBarry Smith     baij->roworiented = PETSC_FALSE;
8467c922b88SBarry Smith     a->roworiented    = PETSC_FALSE;
84726fbe8dcSKarl Rupp 
84891c97fd4SSatish Balay     (((Mat_SeqBAIJ*)baij->B->data))->roworiented = PETSC_FALSE; /* b->roworiented */
849a2d1c673SSatish Balay     while (1) {
8508798bf22SSatish Balay       ierr = MatStashScatterGetMesg_Private(&mat->bstash,&n,&row,&col,&val,&flg);CHKERRQ(ierr);
851a2d1c673SSatish Balay       if (!flg) break;
852a2d1c673SSatish Balay 
853a2d1c673SSatish Balay       for (i=0; i<n;) {
854a2d1c673SSatish Balay         /* Now identify the consecutive vals belonging to the same row */
85526fbe8dcSKarl Rupp         for (j=i,rstart=row[j]; j<n; j++) {
85626fbe8dcSKarl Rupp           if (row[j] != rstart) break;
85726fbe8dcSKarl Rupp         }
858a2d1c673SSatish Balay         if (j < n) ncols = j-i;
859a2d1c673SSatish Balay         else       ncols = n-i;
860*4b4eb8d3SJed Brown         ierr = MatSetValuesBlocked_MPIBAIJ(mat,1,row+i,ncols,col+i,val+i*bs2,mat->insertmode);CHKERRQ(ierr);
861a2d1c673SSatish Balay         i    = j;
862a2d1c673SSatish Balay       }
863a2d1c673SSatish Balay     }
8648798bf22SSatish Balay     ierr = MatStashScatterEnd_Private(&mat->bstash);CHKERRQ(ierr);
86526fbe8dcSKarl Rupp 
866a2d1c673SSatish Balay     baij->roworiented = r1;
867a2d1c673SSatish Balay     a->roworiented    = r2;
86826fbe8dcSKarl Rupp 
86991c97fd4SSatish Balay     ((Mat_SeqBAIJ*)baij->B->data)->roworiented = r3; /* b->roworiented */
870bbb85fb3SSatish Balay   }
871bbb85fb3SSatish Balay 
872bbb85fb3SSatish Balay   ierr = MatAssemblyBegin(baij->A,mode);CHKERRQ(ierr);
873bbb85fb3SSatish Balay   ierr = MatAssemblyEnd(baij->A,mode);CHKERRQ(ierr);
874bbb85fb3SSatish Balay 
875bbb85fb3SSatish Balay   /* determine if any processor has disassembled, if so we must
876bbb85fb3SSatish Balay      also disassemble ourselfs, in order that we may reassemble. */
877bbb85fb3SSatish Balay   /*
878bbb85fb3SSatish Balay      if nonzero structure of submatrix B cannot change then we know that
879bbb85fb3SSatish Balay      no processor disassembled thus we can skip this stuff
880bbb85fb3SSatish Balay   */
881bbb85fb3SSatish Balay   if (!((Mat_SeqBAIJ*)baij->B->data)->nonew) {
882ce94432eSBarry Smith     ierr = MPI_Allreduce(&mat->was_assembled,&other_disassembled,1,MPIU_BOOL,MPI_PROD,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
883bbb85fb3SSatish Balay     if (mat->was_assembled && !other_disassembled) {
884ab9863d7SBarry Smith       ierr = MatDisAssemble_MPIBAIJ(mat);CHKERRQ(ierr);
885bbb85fb3SSatish Balay     }
886bbb85fb3SSatish Balay   }
887bbb85fb3SSatish Balay 
888bbb85fb3SSatish Balay   if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) {
889bbb85fb3SSatish Balay     ierr = MatSetUpMultiply_MPIBAIJ(mat);CHKERRQ(ierr);
890bbb85fb3SSatish Balay   }
891bbb85fb3SSatish Balay   ierr = MatAssemblyBegin(baij->B,mode);CHKERRQ(ierr);
892bbb85fb3SSatish Balay   ierr = MatAssemblyEnd(baij->B,mode);CHKERRQ(ierr);
893bbb85fb3SSatish Balay 
8946cf91177SBarry Smith #if defined(PETSC_USE_INFO)
895bbb85fb3SSatish Balay   if (baij->ht && mode== MAT_FINAL_ASSEMBLY) {
8961e2582c4SBarry Smith     ierr = PetscInfo1(mat,"Average Hash Table Search in MatSetValues = %5.2f\n",((PetscReal)baij->ht_total_ct)/baij->ht_insert_ct);CHKERRQ(ierr);
89726fbe8dcSKarl Rupp 
898bbb85fb3SSatish Balay     baij->ht_total_ct  = 0;
899bbb85fb3SSatish Balay     baij->ht_insert_ct = 0;
900bbb85fb3SSatish Balay   }
901bbb85fb3SSatish Balay #endif
902bbb85fb3SSatish Balay   if (baij->ht_flag && !baij->ht && mode == MAT_FINAL_ASSEMBLY) {
903bbb85fb3SSatish Balay     ierr = MatCreateHashTable_MPIBAIJ_Private(mat,baij->ht_fact);CHKERRQ(ierr);
90426fbe8dcSKarl Rupp 
905bbb85fb3SSatish Balay     mat->ops->setvalues        = MatSetValues_MPIBAIJ_HT;
906bbb85fb3SSatish Balay     mat->ops->setvaluesblocked = MatSetValuesBlocked_MPIBAIJ_HT;
907bbb85fb3SSatish Balay   }
908bbb85fb3SSatish Balay 
909fca92195SBarry Smith   ierr = PetscFree2(baij->rowvalues,baij->rowindices);CHKERRQ(ierr);
91026fbe8dcSKarl Rupp 
911606d414cSSatish Balay   baij->rowvalues = 0;
9124f9cfa9eSBarry Smith 
9134f9cfa9eSBarry Smith   /* if no new nonzero locations are allowed in matrix then only set the matrix state the first time through */
9144f9cfa9eSBarry Smith   if ((!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) || !((Mat_SeqBAIJ*)(baij->A->data))->nonew) {
915e56f5c9eSBarry Smith     PetscObjectState state = baij->A->nonzerostate + baij->B->nonzerostate;
91609e82e2bSBarry Smith     ierr = MPI_Allreduce(&state,&mat->nonzerostate,1,MPIU_INT64,MPI_SUM,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
917e56f5c9eSBarry Smith   }
918bbb85fb3SSatish Balay   PetscFunctionReturn(0);
919bbb85fb3SSatish Balay }
92057b952d6SSatish Balay 
9217da1fb6eSBarry Smith extern PetscErrorCode MatView_SeqBAIJ(Mat,PetscViewer);
9229804daf3SBarry Smith #include <petscdraw.h>
9234a2ae208SSatish Balay #undef __FUNCT__
9244a2ae208SSatish Balay #define __FUNCT__ "MatView_MPIBAIJ_ASCIIorDraworSocket"
9256849ba73SBarry Smith static PetscErrorCode MatView_MPIBAIJ_ASCIIorDraworSocket(Mat mat,PetscViewer viewer)
92657b952d6SSatish Balay {
92757b952d6SSatish Balay   Mat_MPIBAIJ       *baij = (Mat_MPIBAIJ*)mat->data;
928dfbe8321SBarry Smith   PetscErrorCode    ierr;
9297da1fb6eSBarry Smith   PetscMPIInt       rank = baij->rank;
930d0f46423SBarry Smith   PetscInt          bs   = mat->rmap->bs;
931ace3abfcSBarry Smith   PetscBool         iascii,isdraw;
932b0a32e0cSBarry Smith   PetscViewer       sviewer;
933f3ef73ceSBarry Smith   PetscViewerFormat format;
93457b952d6SSatish Balay 
935d64ed03dSBarry Smith   PetscFunctionBegin;
936251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr);
937251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr);
93832077d6dSBarry Smith   if (iascii) {
939b0a32e0cSBarry Smith     ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr);
940456192e2SBarry Smith     if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) {
9414e220ebcSLois Curfman McInnes       MatInfo info;
942ce94432eSBarry Smith       ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)mat),&rank);CHKERRQ(ierr);
943d41123aaSBarry Smith       ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr);
9447b23a99aSBarry Smith       ierr = PetscViewerASCIISynchronizedAllow(viewer,PETSC_TRUE);CHKERRQ(ierr);
94577431f27SBarry Smith       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Local rows %D nz %D nz alloced %D bs %D mem %D\n",
94616608c43SJed Brown                                                 rank,mat->rmap->n,(PetscInt)info.nz_used,(PetscInt)info.nz_allocated,mat->rmap->bs,(PetscInt)info.memory);CHKERRQ(ierr);
947d132466eSBarry Smith       ierr = MatGetInfo(baij->A,MAT_LOCAL,&info);CHKERRQ(ierr);
948e6dd01d4SJed Brown       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] on-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used);CHKERRQ(ierr);
949d132466eSBarry Smith       ierr = MatGetInfo(baij->B,MAT_LOCAL,&info);CHKERRQ(ierr);
950e6dd01d4SJed Brown       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] off-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used);CHKERRQ(ierr);
951b0a32e0cSBarry Smith       ierr = PetscViewerFlush(viewer);CHKERRQ(ierr);
9527b23a99aSBarry Smith       ierr = PetscViewerASCIISynchronizedAllow(viewer,PETSC_FALSE);CHKERRQ(ierr);
95307d81ca4SBarry Smith       ierr = PetscViewerASCIIPrintf(viewer,"Information on VecScatter used in matrix-vector product: \n");CHKERRQ(ierr);
95457b952d6SSatish Balay       ierr = VecScatterView(baij->Mvctx,viewer);CHKERRQ(ierr);
9553a40ed3dSBarry Smith       PetscFunctionReturn(0);
956fb9695e5SSatish Balay     } else if (format == PETSC_VIEWER_ASCII_INFO) {
95777431f27SBarry Smith       ierr = PetscViewerASCIIPrintf(viewer,"  block size is %D\n",bs);CHKERRQ(ierr);
9583a40ed3dSBarry Smith       PetscFunctionReturn(0);
95904929863SHong Zhang     } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) {
96004929863SHong Zhang       PetscFunctionReturn(0);
96157b952d6SSatish Balay     }
96257b952d6SSatish Balay   }
96357b952d6SSatish Balay 
9640f5bd95cSBarry Smith   if (isdraw) {
965b0a32e0cSBarry Smith     PetscDraw draw;
966ace3abfcSBarry Smith     PetscBool isnull;
967b0a32e0cSBarry Smith     ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr);
968b0a32e0cSBarry Smith     ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); if (isnull) PetscFunctionReturn(0);
96957b952d6SSatish Balay   }
97057b952d6SSatish Balay 
9717da1fb6eSBarry Smith   {
97257b952d6SSatish Balay     /* assemble the entire matrix onto first processor. */
97357b952d6SSatish Balay     Mat         A;
97457b952d6SSatish Balay     Mat_SeqBAIJ *Aloc;
975d0f46423SBarry Smith     PetscInt    M = mat->rmap->N,N = mat->cmap->N,*ai,*aj,col,i,j,k,*rvals,mbs = baij->mbs;
9763eda8832SBarry Smith     MatScalar   *a;
9773e219373SBarry Smith     const char  *matname;
97857b952d6SSatish Balay 
979f204ca49SKris Buschelman     /* Here we are creating a temporary matrix, so will assume MPIBAIJ is acceptable */
980f204ca49SKris Buschelman     /* Perhaps this should be the type of mat? */
981ce94432eSBarry Smith     ierr = MatCreate(PetscObjectComm((PetscObject)mat),&A);CHKERRQ(ierr);
98257b952d6SSatish Balay     if (!rank) {
983f69a0ea3SMatthew Knepley       ierr = MatSetSizes(A,M,N,M,N);CHKERRQ(ierr);
984d64ed03dSBarry Smith     } else {
985f69a0ea3SMatthew Knepley       ierr = MatSetSizes(A,0,0,M,N);CHKERRQ(ierr);
98657b952d6SSatish Balay     }
987f204ca49SKris Buschelman     ierr = MatSetType(A,MATMPIBAIJ);CHKERRQ(ierr);
9880298fd71SBarry Smith     ierr = MatMPIBAIJSetPreallocation(A,mat->rmap->bs,0,NULL,0,NULL);CHKERRQ(ierr);
9892b82e772SSatish Balay     ierr = MatSetOption(A,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_FALSE);CHKERRQ(ierr);
9903bb1ff40SBarry Smith     ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)A);CHKERRQ(ierr);
99157b952d6SSatish Balay 
99257b952d6SSatish Balay     /* copy over the A part */
99357b952d6SSatish Balay     Aloc = (Mat_SeqBAIJ*)baij->A->data;
99457b952d6SSatish Balay     ai   = Aloc->i; aj = Aloc->j; a = Aloc->a;
995785e854fSJed Brown     ierr = PetscMalloc1(bs,&rvals);CHKERRQ(ierr);
99657b952d6SSatish Balay 
99757b952d6SSatish Balay     for (i=0; i<mbs; i++) {
998899cda47SBarry Smith       rvals[0] = bs*(baij->rstartbs + i);
99926fbe8dcSKarl Rupp       for (j=1; j<bs; j++) rvals[j] = rvals[j-1] + 1;
100057b952d6SSatish Balay       for (j=ai[i]; j<ai[i+1]; j++) {
1001899cda47SBarry Smith         col = (baij->cstartbs+aj[j])*bs;
100257b952d6SSatish Balay         for (k=0; k<bs; k++) {
100397e5c40aSBarry Smith           ierr      = MatSetValues_MPIBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr);
1004cee3aa6bSSatish Balay           col++; a += bs;
100557b952d6SSatish Balay         }
100657b952d6SSatish Balay       }
100757b952d6SSatish Balay     }
100857b952d6SSatish Balay     /* copy over the B part */
100957b952d6SSatish Balay     Aloc = (Mat_SeqBAIJ*)baij->B->data;
101057b952d6SSatish Balay     ai   = Aloc->i; aj = Aloc->j; a = Aloc->a;
101157b952d6SSatish Balay     for (i=0; i<mbs; i++) {
1012899cda47SBarry Smith       rvals[0] = bs*(baij->rstartbs + i);
101326fbe8dcSKarl Rupp       for (j=1; j<bs; j++) rvals[j] = rvals[j-1] + 1;
101457b952d6SSatish Balay       for (j=ai[i]; j<ai[i+1]; j++) {
101557b952d6SSatish Balay         col = baij->garray[aj[j]]*bs;
101657b952d6SSatish Balay         for (k=0; k<bs; k++) {
101797e5c40aSBarry Smith           ierr      = MatSetValues_MPIBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr);
1018cee3aa6bSSatish Balay           col++; a += bs;
101957b952d6SSatish Balay         }
102057b952d6SSatish Balay       }
102157b952d6SSatish Balay     }
1022606d414cSSatish Balay     ierr = PetscFree(rvals);CHKERRQ(ierr);
10236d4a8577SBarry Smith     ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
10246d4a8577SBarry Smith     ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
102555843e3eSBarry Smith     /*
102655843e3eSBarry Smith        Everyone has to call to draw the matrix since the graphics waits are
1027b0a32e0cSBarry Smith        synchronized across all processors that share the PetscDraw object
102855843e3eSBarry Smith     */
1029b0a32e0cSBarry Smith     ierr = PetscViewerGetSingleton(viewer,&sviewer);CHKERRQ(ierr);
1030ade3a672SBarry Smith     ierr = PetscObjectGetName((PetscObject)mat,&matname);CHKERRQ(ierr);
10313e219373SBarry Smith     if (!rank) {
1032ade3a672SBarry Smith       ierr = PetscObjectSetName((PetscObject)((Mat_MPIBAIJ*)(A->data))->A,matname);CHKERRQ(ierr);
10337da1fb6eSBarry Smith       ierr = MatView_SeqBAIJ(((Mat_MPIBAIJ*)(A->data))->A,sviewer);CHKERRQ(ierr);
103457b952d6SSatish Balay     }
1035b0a32e0cSBarry Smith     ierr = PetscViewerRestoreSingleton(viewer,&sviewer);CHKERRQ(ierr);
10366bf464f9SBarry Smith     ierr = MatDestroy(&A);CHKERRQ(ierr);
103757b952d6SSatish Balay   }
10383a40ed3dSBarry Smith   PetscFunctionReturn(0);
103957b952d6SSatish Balay }
104057b952d6SSatish Balay 
10414a2ae208SSatish Balay #undef __FUNCT__
1042660746e0SBarry Smith #define __FUNCT__ "MatView_MPIBAIJ_Binary"
1043660746e0SBarry Smith static PetscErrorCode MatView_MPIBAIJ_Binary(Mat mat,PetscViewer viewer)
1044660746e0SBarry Smith {
1045660746e0SBarry Smith   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)mat->data;
1046660746e0SBarry Smith   Mat_SeqBAIJ    *A = (Mat_SeqBAIJ*)a->A->data;
1047660746e0SBarry Smith   Mat_SeqBAIJ    *B = (Mat_SeqBAIJ*)a->B->data;
1048660746e0SBarry Smith   PetscErrorCode ierr;
10495f48b12bSBarry Smith   PetscInt       i,*row_lens,*crow_lens,bs = mat->rmap->bs,j,k,bs2=a->bs2,header[4],nz,rlen;
1050e96a6426SSatish Balay   PetscInt       *range=0,nzmax,*column_indices,cnt,col,*garray = a->garray,cstart = mat->cmap->rstart/bs,len,pcnt,l,ll;
1051660746e0SBarry Smith   int            fd;
1052660746e0SBarry Smith   PetscScalar    *column_values;
1053660746e0SBarry Smith   FILE           *file;
1054660746e0SBarry Smith   PetscMPIInt    rank,size,tag = ((PetscObject)viewer)->tag;
1055638eb2ebSBarry Smith   PetscInt       message_count,flowcontrolcount;
1056660746e0SBarry Smith 
1057660746e0SBarry Smith   PetscFunctionBegin;
1058ce94432eSBarry Smith   ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)mat),&rank);CHKERRQ(ierr);
1059ce94432eSBarry Smith   ierr = MPI_Comm_size(PetscObjectComm((PetscObject)mat),&size);CHKERRQ(ierr);
1060660746e0SBarry Smith   nz   = bs2*(A->nz + B->nz);
1061660746e0SBarry Smith   rlen = mat->rmap->n;
1062660746e0SBarry Smith   if (!rank) {
1063660746e0SBarry Smith     header[0] = MAT_FILE_CLASSID;
1064660746e0SBarry Smith     header[1] = mat->rmap->N;
1065660746e0SBarry Smith     header[2] = mat->cmap->N;
106626fbe8dcSKarl Rupp 
1067ce94432eSBarry Smith     ierr = MPI_Reduce(&nz,&header[3],1,MPIU_INT,MPI_SUM,0,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
1068660746e0SBarry Smith     ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr);
1069660746e0SBarry Smith     ierr = PetscBinaryWrite(fd,header,4,PETSC_INT,PETSC_TRUE);CHKERRQ(ierr);
1070660746e0SBarry Smith     /* get largest number of rows any processor has */
1071660746e0SBarry Smith     range = mat->rmap->range;
1072660746e0SBarry Smith     for (i=1; i<size; i++) {
1073660746e0SBarry Smith       rlen = PetscMax(rlen,range[i+1] - range[i]);
1074660746e0SBarry Smith     }
1075660746e0SBarry Smith   } else {
1076ce94432eSBarry Smith     ierr = MPI_Reduce(&nz,0,1,MPIU_INT,MPI_SUM,0,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
1077660746e0SBarry Smith   }
1078660746e0SBarry Smith 
1079785e854fSJed Brown   ierr = PetscMalloc1((rlen/bs),&crow_lens);CHKERRQ(ierr);
1080660746e0SBarry Smith   /* compute lengths of each row  */
1081660746e0SBarry Smith   for (i=0; i<a->mbs; i++) {
1082660746e0SBarry Smith     crow_lens[i] = A->i[i+1] - A->i[i] + B->i[i+1] - B->i[i];
1083660746e0SBarry Smith   }
1084660746e0SBarry Smith   /* store the row lengths to the file */
1085638eb2ebSBarry Smith   ierr = PetscViewerFlowControlStart(viewer,&message_count,&flowcontrolcount);CHKERRQ(ierr);
1086660746e0SBarry Smith   if (!rank) {
1087660746e0SBarry Smith     MPI_Status status;
1088785e854fSJed Brown     ierr = PetscMalloc1(rlen,&row_lens);CHKERRQ(ierr);
1089660746e0SBarry Smith     rlen = (range[1] - range[0])/bs;
1090660746e0SBarry Smith     for (i=0; i<rlen; i++) {
1091660746e0SBarry Smith       for (j=0; j<bs; j++) {
1092660746e0SBarry Smith         row_lens[i*bs+j] = bs*crow_lens[i];
1093660746e0SBarry Smith       }
1094660746e0SBarry Smith     }
1095660746e0SBarry Smith     ierr = PetscBinaryWrite(fd,row_lens,bs*rlen,PETSC_INT,PETSC_TRUE);CHKERRQ(ierr);
1096660746e0SBarry Smith     for (i=1; i<size; i++) {
1097660746e0SBarry Smith       rlen = (range[i+1] - range[i])/bs;
1098639ff905SBarry Smith       ierr = PetscViewerFlowControlStepMaster(viewer,i,&message_count,flowcontrolcount);CHKERRQ(ierr);
1099ce94432eSBarry Smith       ierr = MPI_Recv(crow_lens,rlen,MPIU_INT,i,tag,PetscObjectComm((PetscObject)mat),&status);CHKERRQ(ierr);
1100660746e0SBarry Smith       for (k=0; k<rlen; k++) {
1101660746e0SBarry Smith         for (j=0; j<bs; j++) {
1102660746e0SBarry Smith           row_lens[k*bs+j] = bs*crow_lens[k];
1103660746e0SBarry Smith         }
1104660746e0SBarry Smith       }
1105660746e0SBarry Smith       ierr = PetscBinaryWrite(fd,row_lens,bs*rlen,PETSC_INT,PETSC_TRUE);CHKERRQ(ierr);
1106660746e0SBarry Smith     }
1107639ff905SBarry Smith     ierr = PetscViewerFlowControlEndMaster(viewer,&message_count);CHKERRQ(ierr);
1108660746e0SBarry Smith     ierr = PetscFree(row_lens);CHKERRQ(ierr);
1109660746e0SBarry Smith   } else {
1110639ff905SBarry Smith     ierr = PetscViewerFlowControlStepWorker(viewer,rank,&message_count);CHKERRQ(ierr);
1111ce94432eSBarry Smith     ierr = MPI_Send(crow_lens,mat->rmap->n/bs,MPIU_INT,0,tag,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
1112639ff905SBarry Smith     ierr = PetscViewerFlowControlEndWorker(viewer,&message_count);CHKERRQ(ierr);
1113660746e0SBarry Smith   }
1114660746e0SBarry Smith   ierr = PetscFree(crow_lens);CHKERRQ(ierr);
1115660746e0SBarry Smith 
1116660746e0SBarry Smith   /* load up the local column indices. Include for all rows not just one for each block row since process 0 does not have the
1117660746e0SBarry Smith      information needed to make it for each row from a block row. This does require more communication but still not more than
1118660746e0SBarry Smith      the communication needed for the nonzero values  */
1119660746e0SBarry Smith   nzmax = nz; /*  space a largest processor needs */
1120ce94432eSBarry Smith   ierr  = MPI_Reduce(&nz,&nzmax,1,MPIU_INT,MPI_MAX,0,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
1121785e854fSJed Brown   ierr  = PetscMalloc1(nzmax,&column_indices);CHKERRQ(ierr);
1122660746e0SBarry Smith   cnt   = 0;
1123660746e0SBarry Smith   for (i=0; i<a->mbs; i++) {
1124660746e0SBarry Smith     pcnt = cnt;
1125660746e0SBarry Smith     for (j=B->i[i]; j<B->i[i+1]; j++) {
1126660746e0SBarry Smith       if ((col = garray[B->j[j]]) > cstart) break;
1127660746e0SBarry Smith       for (l=0; l<bs; l++) {
1128660746e0SBarry Smith         column_indices[cnt++] = bs*col+l;
1129660746e0SBarry Smith       }
1130660746e0SBarry Smith     }
1131660746e0SBarry Smith     for (k=A->i[i]; k<A->i[i+1]; k++) {
1132660746e0SBarry Smith       for (l=0; l<bs; l++) {
1133660746e0SBarry Smith         column_indices[cnt++] = bs*(A->j[k] + cstart)+l;
1134660746e0SBarry Smith       }
1135660746e0SBarry Smith     }
1136660746e0SBarry Smith     for (; j<B->i[i+1]; j++) {
1137660746e0SBarry Smith       for (l=0; l<bs; l++) {
1138660746e0SBarry Smith         column_indices[cnt++] = bs*garray[B->j[j]]+l;
1139660746e0SBarry Smith       }
1140660746e0SBarry Smith     }
1141660746e0SBarry Smith     len = cnt - pcnt;
1142660746e0SBarry Smith     for (k=1; k<bs; k++) {
1143660746e0SBarry Smith       ierr = PetscMemcpy(&column_indices[cnt],&column_indices[pcnt],len*sizeof(PetscInt));CHKERRQ(ierr);
1144660746e0SBarry Smith       cnt += len;
1145660746e0SBarry Smith     }
1146660746e0SBarry Smith   }
1147660746e0SBarry Smith   if (cnt != nz) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_LIB,"Internal PETSc error: cnt = %D nz = %D",cnt,nz);
1148660746e0SBarry Smith 
1149660746e0SBarry Smith   /* store the columns to the file */
1150638eb2ebSBarry Smith   ierr = PetscViewerFlowControlStart(viewer,&message_count,&flowcontrolcount);CHKERRQ(ierr);
1151660746e0SBarry Smith   if (!rank) {
1152660746e0SBarry Smith     MPI_Status status;
1153660746e0SBarry Smith     ierr = PetscBinaryWrite(fd,column_indices,nz,PETSC_INT,PETSC_TRUE);CHKERRQ(ierr);
1154660746e0SBarry Smith     for (i=1; i<size; i++) {
1155639ff905SBarry Smith       ierr = PetscViewerFlowControlStepMaster(viewer,i,&message_count,flowcontrolcount);CHKERRQ(ierr);
1156ce94432eSBarry Smith       ierr = MPI_Recv(&cnt,1,MPIU_INT,i,tag,PetscObjectComm((PetscObject)mat),&status);CHKERRQ(ierr);
1157ce94432eSBarry Smith       ierr = MPI_Recv(column_indices,cnt,MPIU_INT,i,tag,PetscObjectComm((PetscObject)mat),&status);CHKERRQ(ierr);
1158660746e0SBarry Smith       ierr = PetscBinaryWrite(fd,column_indices,cnt,PETSC_INT,PETSC_TRUE);CHKERRQ(ierr);
1159660746e0SBarry Smith     }
1160639ff905SBarry Smith     ierr = PetscViewerFlowControlEndMaster(viewer,&message_count);CHKERRQ(ierr);
1161660746e0SBarry Smith   } else {
1162639ff905SBarry Smith     ierr = PetscViewerFlowControlStepWorker(viewer,rank,&message_count);CHKERRQ(ierr);
1163ce94432eSBarry Smith     ierr = MPI_Send(&cnt,1,MPIU_INT,0,tag,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
1164ce94432eSBarry Smith     ierr = MPI_Send(column_indices,cnt,MPIU_INT,0,tag,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
1165639ff905SBarry Smith     ierr = PetscViewerFlowControlEndWorker(viewer,&message_count);CHKERRQ(ierr);
1166660746e0SBarry Smith   }
1167660746e0SBarry Smith   ierr = PetscFree(column_indices);CHKERRQ(ierr);
1168660746e0SBarry Smith 
1169660746e0SBarry Smith   /* load up the numerical values */
1170785e854fSJed Brown   ierr = PetscMalloc1(nzmax,&column_values);CHKERRQ(ierr);
1171660746e0SBarry Smith   cnt  = 0;
1172660746e0SBarry Smith   for (i=0; i<a->mbs; i++) {
1173660746e0SBarry Smith     rlen = bs*(B->i[i+1] - B->i[i] + A->i[i+1] - A->i[i]);
1174660746e0SBarry Smith     for (j=B->i[i]; j<B->i[i+1]; j++) {
1175660746e0SBarry Smith       if (garray[B->j[j]] > cstart) break;
1176660746e0SBarry Smith       for (l=0; l<bs; l++) {
1177660746e0SBarry Smith         for (ll=0; ll<bs; ll++) {
1178660746e0SBarry Smith           column_values[cnt + l*rlen + ll] = B->a[bs2*j+l+bs*ll];
1179660746e0SBarry Smith         }
1180660746e0SBarry Smith       }
1181660746e0SBarry Smith       cnt += bs;
1182660746e0SBarry Smith     }
1183660746e0SBarry Smith     for (k=A->i[i]; k<A->i[i+1]; k++) {
1184660746e0SBarry Smith       for (l=0; l<bs; l++) {
1185660746e0SBarry Smith         for (ll=0; ll<bs; ll++) {
1186660746e0SBarry Smith           column_values[cnt + l*rlen + ll] = A->a[bs2*k+l+bs*ll];
1187660746e0SBarry Smith         }
1188660746e0SBarry Smith       }
1189660746e0SBarry Smith       cnt += bs;
1190660746e0SBarry Smith     }
1191660746e0SBarry Smith     for (; j<B->i[i+1]; j++) {
1192660746e0SBarry Smith       for (l=0; l<bs; l++) {
1193660746e0SBarry Smith         for (ll=0; ll<bs; ll++) {
1194660746e0SBarry Smith           column_values[cnt + l*rlen + ll] = B->a[bs2*j+l+bs*ll];
1195660746e0SBarry Smith         }
1196660746e0SBarry Smith       }
1197660746e0SBarry Smith       cnt += bs;
1198660746e0SBarry Smith     }
1199660746e0SBarry Smith     cnt += (bs-1)*rlen;
1200660746e0SBarry Smith   }
1201660746e0SBarry Smith   if (cnt != nz) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Internal PETSc error: cnt = %D nz = %D",cnt,nz);
1202660746e0SBarry Smith 
1203660746e0SBarry Smith   /* store the column values to the file */
1204638eb2ebSBarry Smith   ierr = PetscViewerFlowControlStart(viewer,&message_count,&flowcontrolcount);CHKERRQ(ierr);
1205660746e0SBarry Smith   if (!rank) {
1206660746e0SBarry Smith     MPI_Status status;
1207660746e0SBarry Smith     ierr = PetscBinaryWrite(fd,column_values,nz,PETSC_SCALAR,PETSC_TRUE);CHKERRQ(ierr);
1208660746e0SBarry Smith     for (i=1; i<size; i++) {
1209639ff905SBarry Smith       ierr = PetscViewerFlowControlStepMaster(viewer,i,&message_count,flowcontrolcount);CHKERRQ(ierr);
1210ce94432eSBarry Smith       ierr = MPI_Recv(&cnt,1,MPIU_INT,i,tag,PetscObjectComm((PetscObject)mat),&status);CHKERRQ(ierr);
1211ce94432eSBarry Smith       ierr = MPI_Recv(column_values,cnt,MPIU_SCALAR,i,tag,PetscObjectComm((PetscObject)mat),&status);CHKERRQ(ierr);
1212660746e0SBarry Smith       ierr = PetscBinaryWrite(fd,column_values,cnt,PETSC_SCALAR,PETSC_TRUE);CHKERRQ(ierr);
1213660746e0SBarry Smith     }
1214639ff905SBarry Smith     ierr = PetscViewerFlowControlEndMaster(viewer,&message_count);CHKERRQ(ierr);
1215660746e0SBarry Smith   } else {
1216639ff905SBarry Smith     ierr = PetscViewerFlowControlStepWorker(viewer,rank,&message_count);CHKERRQ(ierr);
1217ce94432eSBarry Smith     ierr = MPI_Send(&nz,1,MPIU_INT,0,tag,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
1218ce94432eSBarry Smith     ierr = MPI_Send(column_values,nz,MPIU_SCALAR,0,tag,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
1219639ff905SBarry Smith     ierr = PetscViewerFlowControlEndWorker(viewer,&message_count);CHKERRQ(ierr);
1220660746e0SBarry Smith   }
1221660746e0SBarry Smith   ierr = PetscFree(column_values);CHKERRQ(ierr);
1222660746e0SBarry Smith 
1223660746e0SBarry Smith   ierr = PetscViewerBinaryGetInfoPointer(viewer,&file);CHKERRQ(ierr);
1224660746e0SBarry Smith   if (file) {
1225660746e0SBarry Smith     fprintf(file,"-matload_block_size %d\n",(int)mat->rmap->bs);
1226660746e0SBarry Smith   }
1227660746e0SBarry Smith   PetscFunctionReturn(0);
1228660746e0SBarry Smith }
1229660746e0SBarry Smith 
1230660746e0SBarry Smith #undef __FUNCT__
12314a2ae208SSatish Balay #define __FUNCT__ "MatView_MPIBAIJ"
1232dfbe8321SBarry Smith PetscErrorCode MatView_MPIBAIJ(Mat mat,PetscViewer viewer)
123357b952d6SSatish Balay {
1234dfbe8321SBarry Smith   PetscErrorCode ierr;
1235ace3abfcSBarry Smith   PetscBool      iascii,isdraw,issocket,isbinary;
123657b952d6SSatish Balay 
1237d64ed03dSBarry Smith   PetscFunctionBegin;
1238251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr);
1239251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr);
1240251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERSOCKET,&issocket);CHKERRQ(ierr);
1241251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary);CHKERRQ(ierr);
1242660746e0SBarry Smith   if (iascii || isdraw || issocket) {
12437b2a1423SBarry Smith     ierr = MatView_MPIBAIJ_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr);
1244660746e0SBarry Smith   } else if (isbinary) {
1245660746e0SBarry Smith     ierr = MatView_MPIBAIJ_Binary(mat,viewer);CHKERRQ(ierr);
124657b952d6SSatish Balay   }
12473a40ed3dSBarry Smith   PetscFunctionReturn(0);
124857b952d6SSatish Balay }
124957b952d6SSatish Balay 
12504a2ae208SSatish Balay #undef __FUNCT__
12514a2ae208SSatish Balay #define __FUNCT__ "MatDestroy_MPIBAIJ"
1252dfbe8321SBarry Smith PetscErrorCode MatDestroy_MPIBAIJ(Mat mat)
125379bdfe76SSatish Balay {
125479bdfe76SSatish Balay   Mat_MPIBAIJ    *baij = (Mat_MPIBAIJ*)mat->data;
1255dfbe8321SBarry Smith   PetscErrorCode ierr;
125679bdfe76SSatish Balay 
1257d64ed03dSBarry Smith   PetscFunctionBegin;
1258aa482453SBarry Smith #if defined(PETSC_USE_LOG)
1259d0f46423SBarry Smith   PetscLogObjectState((PetscObject)mat,"Rows=%D,Cols=%D",mat->rmap->N,mat->cmap->N);
126079bdfe76SSatish Balay #endif
12618798bf22SSatish Balay   ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr);
12628798bf22SSatish Balay   ierr = MatStashDestroy_Private(&mat->bstash);CHKERRQ(ierr);
12636bf464f9SBarry Smith   ierr = MatDestroy(&baij->A);CHKERRQ(ierr);
12646bf464f9SBarry Smith   ierr = MatDestroy(&baij->B);CHKERRQ(ierr);
1265aa482453SBarry Smith #if defined(PETSC_USE_CTABLE)
12666bc0bbbfSBarry Smith   ierr = PetscTableDestroy(&baij->colmap);CHKERRQ(ierr);
126748e59246SSatish Balay #else
126805b42c5fSBarry Smith   ierr = PetscFree(baij->colmap);CHKERRQ(ierr);
126948e59246SSatish Balay #endif
127005b42c5fSBarry Smith   ierr = PetscFree(baij->garray);CHKERRQ(ierr);
12716bf464f9SBarry Smith   ierr = VecDestroy(&baij->lvec);CHKERRQ(ierr);
12726bf464f9SBarry Smith   ierr = VecScatterDestroy(&baij->Mvctx);CHKERRQ(ierr);
1273fca92195SBarry Smith   ierr = PetscFree2(baij->rowvalues,baij->rowindices);CHKERRQ(ierr);
127405b42c5fSBarry Smith   ierr = PetscFree(baij->barray);CHKERRQ(ierr);
1275fca92195SBarry Smith   ierr = PetscFree2(baij->hd,baij->ht);CHKERRQ(ierr);
1276899cda47SBarry Smith   ierr = PetscFree(baij->rangebs);CHKERRQ(ierr);
1277bf0cc555SLisandro Dalcin   ierr = PetscFree(mat->data);CHKERRQ(ierr);
1278901853e0SKris Buschelman 
1279dbd8c25aSHong Zhang   ierr = PetscObjectChangeTypeName((PetscObject)mat,0);CHKERRQ(ierr);
1280bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatStoreValues_C",NULL);CHKERRQ(ierr);
1281bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatRetrieveValues_C",NULL);CHKERRQ(ierr);
1282bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatGetDiagonalBlock_C",NULL);CHKERRQ(ierr);
1283bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPIBAIJSetPreallocation_C",NULL);CHKERRQ(ierr);
1284bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPIBAIJSetPreallocationCSR_C",NULL);CHKERRQ(ierr);
1285bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDiagonalScaleLocal_C",NULL);CHKERRQ(ierr);
1286bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatSetHashTableFactor_C",NULL);CHKERRQ(ierr);
1287bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpibaij_mpisbaij_C",NULL);CHKERRQ(ierr);
1288bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpibaij_mpibstrm_C",NULL);CHKERRQ(ierr);
12893a40ed3dSBarry Smith   PetscFunctionReturn(0);
129079bdfe76SSatish Balay }
129179bdfe76SSatish Balay 
12924a2ae208SSatish Balay #undef __FUNCT__
12934a2ae208SSatish Balay #define __FUNCT__ "MatMult_MPIBAIJ"
1294dfbe8321SBarry Smith PetscErrorCode MatMult_MPIBAIJ(Mat A,Vec xx,Vec yy)
1295cee3aa6bSSatish Balay {
1296cee3aa6bSSatish Balay   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)A->data;
1297dfbe8321SBarry Smith   PetscErrorCode ierr;
1298b24ad042SBarry Smith   PetscInt       nt;
1299cee3aa6bSSatish Balay 
1300d64ed03dSBarry Smith   PetscFunctionBegin;
1301e1311b90SBarry Smith   ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr);
1302e7e72b3dSBarry Smith   if (nt != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx");
1303e1311b90SBarry Smith   ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr);
1304e7e72b3dSBarry Smith   if (nt != A->rmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible parition of A and yy");
1305ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1306f830108cSBarry Smith   ierr = (*a->A->ops->mult)(a->A,xx,yy);CHKERRQ(ierr);
1307ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1308f830108cSBarry Smith   ierr = (*a->B->ops->multadd)(a->B,a->lvec,yy,yy);CHKERRQ(ierr);
13093a40ed3dSBarry Smith   PetscFunctionReturn(0);
1310cee3aa6bSSatish Balay }
1311cee3aa6bSSatish Balay 
13124a2ae208SSatish Balay #undef __FUNCT__
13134a2ae208SSatish Balay #define __FUNCT__ "MatMultAdd_MPIBAIJ"
1314dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPIBAIJ(Mat A,Vec xx,Vec yy,Vec zz)
1315cee3aa6bSSatish Balay {
1316cee3aa6bSSatish Balay   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)A->data;
1317dfbe8321SBarry Smith   PetscErrorCode ierr;
1318d64ed03dSBarry Smith 
1319d64ed03dSBarry Smith   PetscFunctionBegin;
1320ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1321f830108cSBarry Smith   ierr = (*a->A->ops->multadd)(a->A,xx,yy,zz);CHKERRQ(ierr);
1322ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1323f830108cSBarry Smith   ierr = (*a->B->ops->multadd)(a->B,a->lvec,zz,zz);CHKERRQ(ierr);
13243a40ed3dSBarry Smith   PetscFunctionReturn(0);
1325cee3aa6bSSatish Balay }
1326cee3aa6bSSatish Balay 
13274a2ae208SSatish Balay #undef __FUNCT__
13284a2ae208SSatish Balay #define __FUNCT__ "MatMultTranspose_MPIBAIJ"
1329dfbe8321SBarry Smith PetscErrorCode MatMultTranspose_MPIBAIJ(Mat A,Vec xx,Vec yy)
1330cee3aa6bSSatish Balay {
1331cee3aa6bSSatish Balay   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)A->data;
1332dfbe8321SBarry Smith   PetscErrorCode ierr;
1333ace3abfcSBarry Smith   PetscBool      merged;
1334cee3aa6bSSatish Balay 
1335d64ed03dSBarry Smith   PetscFunctionBegin;
1336a5ff213dSBarry Smith   ierr = VecScatterGetMerged(a->Mvctx,&merged);CHKERRQ(ierr);
1337cee3aa6bSSatish Balay   /* do nondiagonal part */
13387c922b88SBarry Smith   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr);
1339a5ff213dSBarry Smith   if (!merged) {
1340cee3aa6bSSatish Balay     /* send it on its way */
1341ca9f406cSSatish Balay     ierr = VecScatterBegin(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
1342cee3aa6bSSatish Balay     /* do local part */
13437c922b88SBarry Smith     ierr = (*a->A->ops->multtranspose)(a->A,xx,yy);CHKERRQ(ierr);
1344cee3aa6bSSatish Balay     /* receive remote parts: note this assumes the values are not actually */
1345a5ff213dSBarry Smith     /* inserted in yy until the next line */
1346ca9f406cSSatish Balay     ierr = VecScatterEnd(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
1347a5ff213dSBarry Smith   } else {
1348a5ff213dSBarry Smith     /* do local part */
1349a5ff213dSBarry Smith     ierr = (*a->A->ops->multtranspose)(a->A,xx,yy);CHKERRQ(ierr);
1350a5ff213dSBarry Smith     /* send it on its way */
1351ca9f406cSSatish Balay     ierr = VecScatterBegin(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
1352a5ff213dSBarry Smith     /* values actually were received in the Begin() but we need to call this nop */
1353ca9f406cSSatish Balay     ierr = VecScatterEnd(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
1354a5ff213dSBarry Smith   }
13553a40ed3dSBarry Smith   PetscFunctionReturn(0);
1356cee3aa6bSSatish Balay }
1357cee3aa6bSSatish Balay 
13584a2ae208SSatish Balay #undef __FUNCT__
13594a2ae208SSatish Balay #define __FUNCT__ "MatMultTransposeAdd_MPIBAIJ"
1360dfbe8321SBarry Smith PetscErrorCode MatMultTransposeAdd_MPIBAIJ(Mat A,Vec xx,Vec yy,Vec zz)
1361cee3aa6bSSatish Balay {
1362cee3aa6bSSatish Balay   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)A->data;
1363dfbe8321SBarry Smith   PetscErrorCode ierr;
1364cee3aa6bSSatish Balay 
1365d64ed03dSBarry Smith   PetscFunctionBegin;
1366cee3aa6bSSatish Balay   /* do nondiagonal part */
13677c922b88SBarry Smith   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr);
1368cee3aa6bSSatish Balay   /* send it on its way */
1369ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
1370cee3aa6bSSatish Balay   /* do local part */
13717c922b88SBarry Smith   ierr = (*a->A->ops->multtransposeadd)(a->A,xx,yy,zz);CHKERRQ(ierr);
1372cee3aa6bSSatish Balay   /* receive remote parts: note this assumes the values are not actually */
1373cee3aa6bSSatish Balay   /* inserted in yy until the next line, which is true for my implementation*/
1374cee3aa6bSSatish Balay   /* but is not perhaps always true. */
1375ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
13763a40ed3dSBarry Smith   PetscFunctionReturn(0);
1377cee3aa6bSSatish Balay }
1378cee3aa6bSSatish Balay 
1379cee3aa6bSSatish Balay /*
1380cee3aa6bSSatish Balay   This only works correctly for square matrices where the subblock A->A is the
1381cee3aa6bSSatish Balay    diagonal block
1382cee3aa6bSSatish Balay */
13834a2ae208SSatish Balay #undef __FUNCT__
13844a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonal_MPIBAIJ"
1385dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_MPIBAIJ(Mat A,Vec v)
1386cee3aa6bSSatish Balay {
1387cee3aa6bSSatish Balay   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)A->data;
1388dfbe8321SBarry Smith   PetscErrorCode ierr;
1389d64ed03dSBarry Smith 
1390d64ed03dSBarry Smith   PetscFunctionBegin;
1391e32f2f54SBarry Smith   if (A->rmap->N != A->cmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block");
13923a40ed3dSBarry Smith   ierr = MatGetDiagonal(a->A,v);CHKERRQ(ierr);
13933a40ed3dSBarry Smith   PetscFunctionReturn(0);
1394cee3aa6bSSatish Balay }
1395cee3aa6bSSatish Balay 
13964a2ae208SSatish Balay #undef __FUNCT__
13974a2ae208SSatish Balay #define __FUNCT__ "MatScale_MPIBAIJ"
1398f4df32b1SMatthew Knepley PetscErrorCode MatScale_MPIBAIJ(Mat A,PetscScalar aa)
1399cee3aa6bSSatish Balay {
1400cee3aa6bSSatish Balay   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)A->data;
1401dfbe8321SBarry Smith   PetscErrorCode ierr;
1402d64ed03dSBarry Smith 
1403d64ed03dSBarry Smith   PetscFunctionBegin;
1404f4df32b1SMatthew Knepley   ierr = MatScale(a->A,aa);CHKERRQ(ierr);
1405f4df32b1SMatthew Knepley   ierr = MatScale(a->B,aa);CHKERRQ(ierr);
14063a40ed3dSBarry Smith   PetscFunctionReturn(0);
1407cee3aa6bSSatish Balay }
1408026e39d0SSatish Balay 
14094a2ae208SSatish Balay #undef __FUNCT__
14104a2ae208SSatish Balay #define __FUNCT__ "MatGetRow_MPIBAIJ"
1411b24ad042SBarry Smith PetscErrorCode MatGetRow_MPIBAIJ(Mat matin,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v)
1412acdf5bf4SSatish Balay {
1413acdf5bf4SSatish Balay   Mat_MPIBAIJ    *mat = (Mat_MPIBAIJ*)matin->data;
141487828ca2SBarry Smith   PetscScalar    *vworkA,*vworkB,**pvA,**pvB,*v_p;
14156849ba73SBarry Smith   PetscErrorCode ierr;
1416d0f46423SBarry Smith   PetscInt       bs = matin->rmap->bs,bs2 = mat->bs2,i,*cworkA,*cworkB,**pcA,**pcB;
1417d0f46423SBarry Smith   PetscInt       nztot,nzA,nzB,lrow,brstart = matin->rmap->rstart,brend = matin->rmap->rend;
1418899cda47SBarry Smith   PetscInt       *cmap,*idx_p,cstart = mat->cstartbs;
1419acdf5bf4SSatish Balay 
1420d64ed03dSBarry Smith   PetscFunctionBegin;
1421e7e72b3dSBarry Smith   if (row < brstart || row >= brend) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local rows");
1422e32f2f54SBarry Smith   if (mat->getrowactive) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Already active");
1423acdf5bf4SSatish Balay   mat->getrowactive = PETSC_TRUE;
1424acdf5bf4SSatish Balay 
1425acdf5bf4SSatish Balay   if (!mat->rowvalues && (idx || v)) {
1426acdf5bf4SSatish Balay     /*
1427acdf5bf4SSatish Balay         allocate enough space to hold information from the longest row.
1428acdf5bf4SSatish Balay     */
1429acdf5bf4SSatish Balay     Mat_SeqBAIJ *Aa = (Mat_SeqBAIJ*)mat->A->data,*Ba = (Mat_SeqBAIJ*)mat->B->data;
1430b24ad042SBarry Smith     PetscInt    max = 1,mbs = mat->mbs,tmp;
1431bd16c2feSSatish Balay     for (i=0; i<mbs; i++) {
1432acdf5bf4SSatish Balay       tmp = Aa->i[i+1] - Aa->i[i] + Ba->i[i+1] - Ba->i[i];
143326fbe8dcSKarl Rupp       if (max < tmp) max = tmp;
1434acdf5bf4SSatish Balay     }
1435dcca6d9dSJed Brown     ierr = PetscMalloc2(max*bs2,&mat->rowvalues,max*bs2,&mat->rowindices);CHKERRQ(ierr);
1436acdf5bf4SSatish Balay   }
1437d9d09a02SSatish Balay   lrow = row - brstart;
1438acdf5bf4SSatish Balay 
1439acdf5bf4SSatish Balay   pvA = &vworkA; pcA = &cworkA; pvB = &vworkB; pcB = &cworkB;
1440acdf5bf4SSatish Balay   if (!v)   {pvA = 0; pvB = 0;}
1441acdf5bf4SSatish Balay   if (!idx) {pcA = 0; if (!v) pcB = 0;}
1442f830108cSBarry Smith   ierr  = (*mat->A->ops->getrow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr);
1443f830108cSBarry Smith   ierr  = (*mat->B->ops->getrow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr);
1444acdf5bf4SSatish Balay   nztot = nzA + nzB;
1445acdf5bf4SSatish Balay 
1446acdf5bf4SSatish Balay   cmap = mat->garray;
1447acdf5bf4SSatish Balay   if (v  || idx) {
1448acdf5bf4SSatish Balay     if (nztot) {
1449acdf5bf4SSatish Balay       /* Sort by increasing column numbers, assuming A and B already sorted */
1450b24ad042SBarry Smith       PetscInt imark = -1;
1451acdf5bf4SSatish Balay       if (v) {
1452acdf5bf4SSatish Balay         *v = v_p = mat->rowvalues;
1453acdf5bf4SSatish Balay         for (i=0; i<nzB; i++) {
1454d9d09a02SSatish Balay           if (cmap[cworkB[i]/bs] < cstart) v_p[i] = vworkB[i];
1455acdf5bf4SSatish Balay           else break;
1456acdf5bf4SSatish Balay         }
1457acdf5bf4SSatish Balay         imark = i;
1458acdf5bf4SSatish Balay         for (i=0; i<nzA; i++)     v_p[imark+i] = vworkA[i];
1459acdf5bf4SSatish Balay         for (i=imark; i<nzB; i++) v_p[nzA+i]   = vworkB[i];
1460acdf5bf4SSatish Balay       }
1461acdf5bf4SSatish Balay       if (idx) {
1462acdf5bf4SSatish Balay         *idx = idx_p = mat->rowindices;
1463acdf5bf4SSatish Balay         if (imark > -1) {
1464acdf5bf4SSatish Balay           for (i=0; i<imark; i++) {
1465bd16c2feSSatish Balay             idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs;
1466acdf5bf4SSatish Balay           }
1467acdf5bf4SSatish Balay         } else {
1468acdf5bf4SSatish Balay           for (i=0; i<nzB; i++) {
146926fbe8dcSKarl Rupp             if (cmap[cworkB[i]/bs] < cstart) idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs;
1470acdf5bf4SSatish Balay             else break;
1471acdf5bf4SSatish Balay           }
1472acdf5bf4SSatish Balay           imark = i;
1473acdf5bf4SSatish Balay         }
1474d9d09a02SSatish Balay         for (i=0; i<nzA; i++)     idx_p[imark+i] = cstart*bs + cworkA[i];
1475d9d09a02SSatish Balay         for (i=imark; i<nzB; i++) idx_p[nzA+i]   = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ;
1476acdf5bf4SSatish Balay       }
1477d64ed03dSBarry Smith     } else {
1478d212a18eSSatish Balay       if (idx) *idx = 0;
1479d212a18eSSatish Balay       if (v)   *v   = 0;
1480d212a18eSSatish Balay     }
1481acdf5bf4SSatish Balay   }
1482acdf5bf4SSatish Balay   *nz  = nztot;
1483f830108cSBarry Smith   ierr = (*mat->A->ops->restorerow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr);
1484f830108cSBarry Smith   ierr = (*mat->B->ops->restorerow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr);
14853a40ed3dSBarry Smith   PetscFunctionReturn(0);
1486acdf5bf4SSatish Balay }
1487acdf5bf4SSatish Balay 
14884a2ae208SSatish Balay #undef __FUNCT__
14894a2ae208SSatish Balay #define __FUNCT__ "MatRestoreRow_MPIBAIJ"
1490b24ad042SBarry Smith PetscErrorCode MatRestoreRow_MPIBAIJ(Mat mat,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v)
1491acdf5bf4SSatish Balay {
1492acdf5bf4SSatish Balay   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data;
1493d64ed03dSBarry Smith 
1494d64ed03dSBarry Smith   PetscFunctionBegin;
1495e7e72b3dSBarry Smith   if (!baij->getrowactive) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"MatGetRow not called");
1496acdf5bf4SSatish Balay   baij->getrowactive = PETSC_FALSE;
14973a40ed3dSBarry Smith   PetscFunctionReturn(0);
1498acdf5bf4SSatish Balay }
1499acdf5bf4SSatish Balay 
15004a2ae208SSatish Balay #undef __FUNCT__
15014a2ae208SSatish Balay #define __FUNCT__ "MatZeroEntries_MPIBAIJ"
1502dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_MPIBAIJ(Mat A)
150358667388SSatish Balay {
150458667388SSatish Balay   Mat_MPIBAIJ    *l = (Mat_MPIBAIJ*)A->data;
1505dfbe8321SBarry Smith   PetscErrorCode ierr;
1506d64ed03dSBarry Smith 
1507d64ed03dSBarry Smith   PetscFunctionBegin;
150858667388SSatish Balay   ierr = MatZeroEntries(l->A);CHKERRQ(ierr);
150958667388SSatish Balay   ierr = MatZeroEntries(l->B);CHKERRQ(ierr);
15103a40ed3dSBarry Smith   PetscFunctionReturn(0);
151158667388SSatish Balay }
15120ac07820SSatish Balay 
15134a2ae208SSatish Balay #undef __FUNCT__
15144a2ae208SSatish Balay #define __FUNCT__ "MatGetInfo_MPIBAIJ"
1515dfbe8321SBarry Smith PetscErrorCode MatGetInfo_MPIBAIJ(Mat matin,MatInfoType flag,MatInfo *info)
15160ac07820SSatish Balay {
15174e220ebcSLois Curfman McInnes   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)matin->data;
15184e220ebcSLois Curfman McInnes   Mat            A  = a->A,B = a->B;
1519dfbe8321SBarry Smith   PetscErrorCode ierr;
1520329f5518SBarry Smith   PetscReal      isend[5],irecv[5];
15210ac07820SSatish Balay 
1522d64ed03dSBarry Smith   PetscFunctionBegin;
1523d0f46423SBarry Smith   info->block_size = (PetscReal)matin->rmap->bs;
152426fbe8dcSKarl Rupp 
15254e220ebcSLois Curfman McInnes   ierr = MatGetInfo(A,MAT_LOCAL,info);CHKERRQ(ierr);
152626fbe8dcSKarl Rupp 
15270e4b21beSBarry Smith   isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded;
1528de87f314SBarry Smith   isend[3] = info->memory;  isend[4] = info->mallocs;
152926fbe8dcSKarl Rupp 
15304e220ebcSLois Curfman McInnes   ierr = MatGetInfo(B,MAT_LOCAL,info);CHKERRQ(ierr);
153126fbe8dcSKarl Rupp 
15320e4b21beSBarry Smith   isend[0] += info->nz_used; isend[1] += info->nz_allocated; isend[2] += info->nz_unneeded;
1533de87f314SBarry Smith   isend[3] += info->memory;  isend[4] += info->mallocs;
153426fbe8dcSKarl Rupp 
15350ac07820SSatish Balay   if (flag == MAT_LOCAL) {
15364e220ebcSLois Curfman McInnes     info->nz_used      = isend[0];
15374e220ebcSLois Curfman McInnes     info->nz_allocated = isend[1];
15384e220ebcSLois Curfman McInnes     info->nz_unneeded  = isend[2];
15394e220ebcSLois Curfman McInnes     info->memory       = isend[3];
15404e220ebcSLois Curfman McInnes     info->mallocs      = isend[4];
15410ac07820SSatish Balay   } else if (flag == MAT_GLOBAL_MAX) {
1542ce94432eSBarry Smith     ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPIU_MAX,PetscObjectComm((PetscObject)matin));CHKERRQ(ierr);
154326fbe8dcSKarl Rupp 
15444e220ebcSLois Curfman McInnes     info->nz_used      = irecv[0];
15454e220ebcSLois Curfman McInnes     info->nz_allocated = irecv[1];
15464e220ebcSLois Curfman McInnes     info->nz_unneeded  = irecv[2];
15474e220ebcSLois Curfman McInnes     info->memory       = irecv[3];
15484e220ebcSLois Curfman McInnes     info->mallocs      = irecv[4];
15490ac07820SSatish Balay   } else if (flag == MAT_GLOBAL_SUM) {
1550ce94432eSBarry Smith     ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)matin));CHKERRQ(ierr);
155126fbe8dcSKarl Rupp 
15524e220ebcSLois Curfman McInnes     info->nz_used      = irecv[0];
15534e220ebcSLois Curfman McInnes     info->nz_allocated = irecv[1];
15544e220ebcSLois Curfman McInnes     info->nz_unneeded  = irecv[2];
15554e220ebcSLois Curfman McInnes     info->memory       = irecv[3];
15564e220ebcSLois Curfman McInnes     info->mallocs      = irecv[4];
1557ce94432eSBarry Smith   } else SETERRQ1(PetscObjectComm((PetscObject)matin),PETSC_ERR_ARG_WRONG,"Unknown MatInfoType argument %d",(int)flag);
15584e220ebcSLois Curfman McInnes   info->fill_ratio_given  = 0; /* no parallel LU/ILU/Cholesky */
15594e220ebcSLois Curfman McInnes   info->fill_ratio_needed = 0;
15604e220ebcSLois Curfman McInnes   info->factor_mallocs    = 0;
15613a40ed3dSBarry Smith   PetscFunctionReturn(0);
15620ac07820SSatish Balay }
15630ac07820SSatish Balay 
15644a2ae208SSatish Balay #undef __FUNCT__
15654a2ae208SSatish Balay #define __FUNCT__ "MatSetOption_MPIBAIJ"
1566ace3abfcSBarry Smith PetscErrorCode MatSetOption_MPIBAIJ(Mat A,MatOption op,PetscBool flg)
156758667388SSatish Balay {
156858667388SSatish Balay   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)A->data;
1569dfbe8321SBarry Smith   PetscErrorCode ierr;
157058667388SSatish Balay 
1571d64ed03dSBarry Smith   PetscFunctionBegin;
157212c028f9SKris Buschelman   switch (op) {
1573512a5fc5SBarry Smith   case MAT_NEW_NONZERO_LOCATIONS:
157412c028f9SKris Buschelman   case MAT_NEW_NONZERO_ALLOCATION_ERR:
157528b2fa4aSMatthew Knepley   case MAT_UNUSED_NONZERO_LOCATION_ERR:
1576a9817697SBarry Smith   case MAT_KEEP_NONZERO_PATTERN:
157712c028f9SKris Buschelman   case MAT_NEW_NONZERO_LOCATION_ERR:
15784e0d8c25SBarry Smith     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
15794e0d8c25SBarry Smith     ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr);
158012c028f9SKris Buschelman     break;
158112c028f9SKris Buschelman   case MAT_ROW_ORIENTED:
15824e0d8c25SBarry Smith     a->roworiented = flg;
158326fbe8dcSKarl Rupp 
15844e0d8c25SBarry Smith     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
15854e0d8c25SBarry Smith     ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr);
158612c028f9SKris Buschelman     break;
15874e0d8c25SBarry Smith   case MAT_NEW_DIAGONALS:
1588290bbb0aSBarry Smith     ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr);
158912c028f9SKris Buschelman     break;
159012c028f9SKris Buschelman   case MAT_IGNORE_OFF_PROC_ENTRIES:
15914e0d8c25SBarry Smith     a->donotstash = flg;
159212c028f9SKris Buschelman     break;
159312c028f9SKris Buschelman   case MAT_USE_HASH_TABLE:
15944e0d8c25SBarry Smith     a->ht_flag = flg;
159512c028f9SKris Buschelman     break;
159677e54ba9SKris Buschelman   case MAT_SYMMETRIC:
159777e54ba9SKris Buschelman   case MAT_STRUCTURALLY_SYMMETRIC:
15982188ac68SBarry Smith   case MAT_HERMITIAN:
15992188ac68SBarry Smith   case MAT_SYMMETRY_ETERNAL:
16004e0d8c25SBarry Smith     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
160177e54ba9SKris Buschelman     break;
160212c028f9SKris Buschelman   default:
1603ce94432eSBarry Smith     SETERRQ1(PetscObjectComm((PetscObject)A),PETSC_ERR_SUP,"unknown option %d",op);
1604d64ed03dSBarry Smith   }
16053a40ed3dSBarry Smith   PetscFunctionReturn(0);
160658667388SSatish Balay }
160758667388SSatish Balay 
16084a2ae208SSatish Balay #undef __FUNCT__
16096a719282SBarry Smith #define __FUNCT__ "MatTranspose_MPIBAIJ"
1610fc4dec0aSBarry Smith PetscErrorCode MatTranspose_MPIBAIJ(Mat A,MatReuse reuse,Mat *matout)
16110ac07820SSatish Balay {
16120ac07820SSatish Balay   Mat_MPIBAIJ    *baij = (Mat_MPIBAIJ*)A->data;
16130ac07820SSatish Balay   Mat_SeqBAIJ    *Aloc;
16140ac07820SSatish Balay   Mat            B;
1615dfbe8321SBarry Smith   PetscErrorCode ierr;
1616d0f46423SBarry Smith   PetscInt       M =A->rmap->N,N=A->cmap->N,*ai,*aj,i,*rvals,j,k,col;
1617d0f46423SBarry Smith   PetscInt       bs=A->rmap->bs,mbs=baij->mbs;
16183eda8832SBarry Smith   MatScalar      *a;
16190ac07820SSatish Balay 
1620d64ed03dSBarry Smith   PetscFunctionBegin;
1621ce94432eSBarry Smith   if (reuse == MAT_REUSE_MATRIX && A == *matout && M != N) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ARG_SIZ,"Square matrix only for in-place");
1622fc4dec0aSBarry Smith   if (reuse == MAT_INITIAL_MATRIX || *matout == A) {
1623ce94432eSBarry Smith     ierr = MatCreate(PetscObjectComm((PetscObject)A),&B);CHKERRQ(ierr);
1624d0f46423SBarry Smith     ierr = MatSetSizes(B,A->cmap->n,A->rmap->n,N,M);CHKERRQ(ierr);
16257adad957SLisandro Dalcin     ierr = MatSetType(B,((PetscObject)A)->type_name);CHKERRQ(ierr);
16262e72b8d9SBarry Smith     /* Do not know preallocation information, but must set block size */
16270298fd71SBarry Smith     ierr = MatMPIBAIJSetPreallocation(B,A->rmap->bs,PETSC_DECIDE,NULL,PETSC_DECIDE,NULL);CHKERRQ(ierr);
1628fc4dec0aSBarry Smith   } else {
1629fc4dec0aSBarry Smith     B = *matout;
1630fc4dec0aSBarry Smith   }
16310ac07820SSatish Balay 
16320ac07820SSatish Balay   /* copy over the A part */
16330ac07820SSatish Balay   Aloc = (Mat_SeqBAIJ*)baij->A->data;
16340ac07820SSatish Balay   ai   = Aloc->i; aj = Aloc->j; a = Aloc->a;
1635785e854fSJed Brown   ierr = PetscMalloc1(bs,&rvals);CHKERRQ(ierr);
16360ac07820SSatish Balay 
16370ac07820SSatish Balay   for (i=0; i<mbs; i++) {
1638899cda47SBarry Smith     rvals[0] = bs*(baij->rstartbs + i);
163926fbe8dcSKarl Rupp     for (j=1; j<bs; j++) rvals[j] = rvals[j-1] + 1;
16400ac07820SSatish Balay     for (j=ai[i]; j<ai[i+1]; j++) {
1641899cda47SBarry Smith       col = (baij->cstartbs+aj[j])*bs;
16420ac07820SSatish Balay       for (k=0; k<bs; k++) {
164397e5c40aSBarry Smith         ierr = MatSetValues_MPIBAIJ(B,1,&col,bs,rvals,a,INSERT_VALUES);CHKERRQ(ierr);
164426fbe8dcSKarl Rupp 
16450ac07820SSatish Balay         col++; a += bs;
16460ac07820SSatish Balay       }
16470ac07820SSatish Balay     }
16480ac07820SSatish Balay   }
16490ac07820SSatish Balay   /* copy over the B part */
16500ac07820SSatish Balay   Aloc = (Mat_SeqBAIJ*)baij->B->data;
16510ac07820SSatish Balay   ai   = Aloc->i; aj = Aloc->j; a = Aloc->a;
16520ac07820SSatish Balay   for (i=0; i<mbs; i++) {
1653899cda47SBarry Smith     rvals[0] = bs*(baij->rstartbs + i);
165426fbe8dcSKarl Rupp     for (j=1; j<bs; j++) rvals[j] = rvals[j-1] + 1;
16550ac07820SSatish Balay     for (j=ai[i]; j<ai[i+1]; j++) {
16560ac07820SSatish Balay       col = baij->garray[aj[j]]*bs;
16570ac07820SSatish Balay       for (k=0; k<bs; k++) {
165897e5c40aSBarry Smith         ierr = MatSetValues_MPIBAIJ(B,1,&col,bs,rvals,a,INSERT_VALUES);CHKERRQ(ierr);
165926fbe8dcSKarl Rupp         col++;
166026fbe8dcSKarl Rupp         a += bs;
16610ac07820SSatish Balay       }
16620ac07820SSatish Balay     }
16630ac07820SSatish Balay   }
1664606d414cSSatish Balay   ierr = PetscFree(rvals);CHKERRQ(ierr);
16650ac07820SSatish Balay   ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
16660ac07820SSatish Balay   ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
16670ac07820SSatish Balay 
166826fbe8dcSKarl Rupp   if (reuse == MAT_INITIAL_MATRIX || *matout != A) *matout = B;
166926fbe8dcSKarl Rupp   else {
1670eb6b5d47SBarry Smith     ierr = MatHeaderMerge(A,B);CHKERRQ(ierr);
16710ac07820SSatish Balay   }
16723a40ed3dSBarry Smith   PetscFunctionReturn(0);
16730ac07820SSatish Balay }
16740e95ebc0SSatish Balay 
16754a2ae208SSatish Balay #undef __FUNCT__
16764a2ae208SSatish Balay #define __FUNCT__ "MatDiagonalScale_MPIBAIJ"
1677dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_MPIBAIJ(Mat mat,Vec ll,Vec rr)
16780e95ebc0SSatish Balay {
167936c4a09eSSatish Balay   Mat_MPIBAIJ    *baij = (Mat_MPIBAIJ*)mat->data;
168036c4a09eSSatish Balay   Mat            a     = baij->A,b = baij->B;
1681dfbe8321SBarry Smith   PetscErrorCode ierr;
1682b24ad042SBarry Smith   PetscInt       s1,s2,s3;
16830e95ebc0SSatish Balay 
1684d64ed03dSBarry Smith   PetscFunctionBegin;
168536c4a09eSSatish Balay   ierr = MatGetLocalSize(mat,&s2,&s3);CHKERRQ(ierr);
168636c4a09eSSatish Balay   if (rr) {
168736c4a09eSSatish Balay     ierr = VecGetLocalSize(rr,&s1);CHKERRQ(ierr);
1688e32f2f54SBarry Smith     if (s1!=s3) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"right vector non-conforming local size");
168936c4a09eSSatish Balay     /* Overlap communication with computation. */
1690ca9f406cSSatish Balay     ierr = VecScatterBegin(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
169136c4a09eSSatish Balay   }
16920e95ebc0SSatish Balay   if (ll) {
16930e95ebc0SSatish Balay     ierr = VecGetLocalSize(ll,&s1);CHKERRQ(ierr);
1694e32f2f54SBarry Smith     if (s1!=s2) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"left vector non-conforming local size");
16950298fd71SBarry Smith     ierr = (*b->ops->diagonalscale)(b,ll,NULL);CHKERRQ(ierr);
16960e95ebc0SSatish Balay   }
169736c4a09eSSatish Balay   /* scale  the diagonal block */
169836c4a09eSSatish Balay   ierr = (*a->ops->diagonalscale)(a,ll,rr);CHKERRQ(ierr);
169936c4a09eSSatish Balay 
170036c4a09eSSatish Balay   if (rr) {
170136c4a09eSSatish Balay     /* Do a scatter end and then right scale the off-diagonal block */
1702ca9f406cSSatish Balay     ierr = VecScatterEnd(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
17030298fd71SBarry Smith     ierr = (*b->ops->diagonalscale)(b,NULL,baij->lvec);CHKERRQ(ierr);
170436c4a09eSSatish Balay   }
17053a40ed3dSBarry Smith   PetscFunctionReturn(0);
17060e95ebc0SSatish Balay }
17070e95ebc0SSatish Balay 
17084a2ae208SSatish Balay #undef __FUNCT__
17094a2ae208SSatish Balay #define __FUNCT__ "MatZeroRows_MPIBAIJ"
17102b40b63fSBarry Smith PetscErrorCode MatZeroRows_MPIBAIJ(Mat A,PetscInt N,const PetscInt rows[],PetscScalar diag,Vec x,Vec b)
17110ac07820SSatish Balay {
17120ac07820SSatish Balay   Mat_MPIBAIJ   *l      = (Mat_MPIBAIJ *) A->data;
171365a92638SMatthew G. Knepley   PetscInt      *owners = A->rmap->range;
171465a92638SMatthew G. Knepley   PetscInt       n      = A->rmap->n;
171565a92638SMatthew G. Knepley   PetscSF        sf;
171665a92638SMatthew G. Knepley   PetscInt      *lrows;
171765a92638SMatthew G. Knepley   PetscSFNode   *rrows;
171869ea2d38SJed Brown   PetscInt       r, p = 0, len = 0;
17196849ba73SBarry Smith   PetscErrorCode ierr;
17200ac07820SSatish Balay 
1721d64ed03dSBarry Smith   PetscFunctionBegin;
172265a92638SMatthew G. Knepley   /* Create SF where leaves are input rows and roots are owned rows */
1723785e854fSJed Brown   ierr = PetscMalloc1(n, &lrows);CHKERRQ(ierr);
172465a92638SMatthew G. Knepley   for (r = 0; r < n; ++r) lrows[r] = -1;
1725a34163a4SJed Brown   if (!A->nooffproczerorows) {ierr = PetscMalloc1(N, &rrows);CHKERRQ(ierr);}
172665a92638SMatthew G. Knepley   for (r = 0; r < N; ++r) {
172765a92638SMatthew G. Knepley     const PetscInt idx   = rows[r];
172869ea2d38SJed Brown     if (idx < 0 || A->rmap->N <= idx) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row %D out of range [0,%D)",idx,A->rmap->N);
172969ea2d38SJed Brown     if (idx < owners[p] || owners[p+1] <= idx) { /* short-circuit the search if the last p owns this row too */
173069ea2d38SJed Brown       ierr = PetscLayoutFindOwner(A->rmap,idx,&p);CHKERRQ(ierr);
173169ea2d38SJed Brown     }
1732a34163a4SJed Brown     if (A->nooffproczerorows) {
1733a34163a4SJed Brown       if (p != l->rank) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"MAT_NO_OFF_PROC_ZERO_ROWS set, but row %D is not owned by rank %d",idx,l->rank);
1734a34163a4SJed Brown       lrows[len++] = idx - owners[p];
1735a34163a4SJed Brown     } else {
173665a92638SMatthew G. Knepley       rrows[r].rank = p;
173765a92638SMatthew G. Knepley       rrows[r].index = rows[r] - owners[p];
17380ac07820SSatish Balay     }
1739a34163a4SJed Brown   }
1740a34163a4SJed Brown   if (!A->nooffproczerorows) {
174165a92638SMatthew G. Knepley     ierr = PetscSFCreate(PetscObjectComm((PetscObject) A), &sf);CHKERRQ(ierr);
174265a92638SMatthew G. Knepley     ierr = PetscSFSetGraph(sf, n, N, NULL, PETSC_OWN_POINTER, rrows, PETSC_OWN_POINTER);CHKERRQ(ierr);
174365a92638SMatthew G. Knepley     /* Collect flags for rows to be zeroed */
174465a92638SMatthew G. Knepley     ierr = PetscSFReduceBegin(sf, MPIU_INT, (PetscInt *) rows, lrows, MPI_LOR);CHKERRQ(ierr);
174565a92638SMatthew G. Knepley     ierr = PetscSFReduceEnd(sf, MPIU_INT, (PetscInt *) rows, lrows, MPI_LOR);CHKERRQ(ierr);
174665a92638SMatthew G. Knepley     ierr = PetscSFDestroy(&sf);CHKERRQ(ierr);
174765a92638SMatthew G. Knepley     /* Compress and put in row numbers */
174865a92638SMatthew G. Knepley     for (r = 0; r < n; ++r) if (lrows[r] >= 0) lrows[len++] = r;
1749a34163a4SJed Brown   }
175097b48c8fSBarry Smith   /* fix right hand side if needed */
175197b48c8fSBarry Smith   if (x && b) {
175265a92638SMatthew G. Knepley     const PetscScalar *xx;
175365a92638SMatthew G. Knepley     PetscScalar       *bb;
175465a92638SMatthew G. Knepley 
175597b48c8fSBarry Smith     ierr = VecGetArrayRead(x,&xx);CHKERRQ(ierr);
175697b48c8fSBarry Smith     ierr = VecGetArray(b,&bb);CHKERRQ(ierr);
175765a92638SMatthew G. Knepley     for (r = 0; r < len; ++r) bb[lrows[r]] = diag*xx[lrows[r]];
175897b48c8fSBarry Smith     ierr = VecRestoreArrayRead(x,&xx);CHKERRQ(ierr);
175997b48c8fSBarry Smith     ierr = VecRestoreArray(b,&bb);CHKERRQ(ierr);
176097b48c8fSBarry Smith   }
176197b48c8fSBarry Smith 
17620ac07820SSatish Balay   /* actually zap the local rows */
176372dacd9aSBarry Smith   /*
176472dacd9aSBarry Smith         Zero the required rows. If the "diagonal block" of the matrix
1765a8c7a070SBarry Smith      is square and the user wishes to set the diagonal we use separate
176672dacd9aSBarry Smith      code so that MatSetValues() is not called for each diagonal allocating
176772dacd9aSBarry Smith      new memory, thus calling lots of mallocs and slowing things down.
176872dacd9aSBarry Smith 
176972dacd9aSBarry Smith   */
17709c957beeSSatish Balay   /* must zero l->B before l->A because the (diag) case below may put values into l->B*/
1771a34163a4SJed Brown   ierr = MatZeroRows_SeqBAIJ(l->B,len,lrows,0.0,NULL,NULL);CHKERRQ(ierr);
1772d0f46423SBarry Smith   if ((diag != 0.0) && (l->A->rmap->N == l->A->cmap->N)) {
1773a34163a4SJed Brown     ierr = MatZeroRows_SeqBAIJ(l->A,len,lrows,diag,NULL,NULL);CHKERRQ(ierr);
1774f4df32b1SMatthew Knepley   } else if (diag != 0.0) {
177565a92638SMatthew G. Knepley     ierr = MatZeroRows_SeqBAIJ(l->A,len,lrows,0.0,0,0);CHKERRQ(ierr);
1776e7e72b3dSBarry Smith     if (((Mat_SeqBAIJ*)l->A->data)->nonew) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"MatZeroRows() on rectangular matrices cannot be used with the Mat options \n\
1777512a5fc5SBarry Smith        MAT_NEW_NONZERO_LOCATIONS,MAT_NEW_NONZERO_LOCATION_ERR,MAT_NEW_NONZERO_ALLOCATION_ERR");
177865a92638SMatthew G. Knepley     for (r = 0; r < len; ++r) {
177965a92638SMatthew G. Knepley       const PetscInt row = lrows[r] + A->rmap->rstart;
1780f4df32b1SMatthew Knepley       ierr = MatSetValues(A,1,&row,1,&row,&diag,INSERT_VALUES);CHKERRQ(ierr);
1781a07cd24cSSatish Balay     }
1782a07cd24cSSatish Balay     ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
1783a07cd24cSSatish Balay     ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
17849c957beeSSatish Balay   } else {
1785a34163a4SJed Brown     ierr = MatZeroRows_SeqBAIJ(l->A,len,lrows,0.0,NULL,NULL);CHKERRQ(ierr);
1786a07cd24cSSatish Balay   }
1787606d414cSSatish Balay   ierr = PetscFree(lrows);CHKERRQ(ierr);
17884f9cfa9eSBarry Smith 
17894f9cfa9eSBarry Smith   /* only change matrix nonzero state if pattern was allowed to be changed */
17904f9cfa9eSBarry Smith   if (!((Mat_SeqBAIJ*)(l->A->data))->keepnonzeropattern) {
1791e56f5c9eSBarry Smith     PetscObjectState state = l->A->nonzerostate + l->B->nonzerostate;
179209e82e2bSBarry Smith     ierr = MPI_Allreduce(&state,&A->nonzerostate,1,MPIU_INT64,MPI_SUM,PetscObjectComm((PetscObject)A));CHKERRQ(ierr);
1793e56f5c9eSBarry Smith   }
17943a40ed3dSBarry Smith   PetscFunctionReturn(0);
17950ac07820SSatish Balay }
179672dacd9aSBarry Smith 
17974a2ae208SSatish Balay #undef __FUNCT__
17986f0a72daSMatthew G. Knepley #define __FUNCT__ "MatZeroRowsColumns_MPIBAIJ"
17996f0a72daSMatthew G. Knepley PetscErrorCode MatZeroRowsColumns_MPIBAIJ(Mat A,PetscInt N,const PetscInt rows[],PetscScalar diag,Vec x,Vec b)
18006f0a72daSMatthew G. Knepley {
18016f0a72daSMatthew G. Knepley   Mat_MPIBAIJ       *l = (Mat_MPIBAIJ*)A->data;
18026f0a72daSMatthew G. Knepley   PetscErrorCode    ierr;
18035ba17502SJed Brown   PetscMPIInt       n = A->rmap->n;
1804fbb64d0eSMatthew G. Knepley   PetscInt          i,j,k,r,p = 0,len = 0,row,col,count;
18056f0a72daSMatthew G. Knepley   PetscInt          *lrows,*owners = A->rmap->range;
18066f0a72daSMatthew G. Knepley   PetscSFNode       *rrows;
18076f0a72daSMatthew G. Knepley   PetscSF           sf;
18086f0a72daSMatthew G. Knepley   const PetscScalar *xx;
18096f0a72daSMatthew G. Knepley   PetscScalar       *bb,*mask;
18106f0a72daSMatthew G. Knepley   Vec               xmask,lmask;
18116f0a72daSMatthew G. Knepley   Mat_SeqBAIJ       *baij = (Mat_SeqBAIJ*)l->B->data;
18126f0a72daSMatthew G. Knepley   PetscInt           bs = A->rmap->bs, bs2 = baij->bs2;
18136f0a72daSMatthew G. Knepley   PetscScalar       *aa;
18146f0a72daSMatthew G. Knepley 
18156f0a72daSMatthew G. Knepley   PetscFunctionBegin;
18166f0a72daSMatthew G. Knepley   /* Create SF where leaves are input rows and roots are owned rows */
18176f0a72daSMatthew G. Knepley   ierr = PetscMalloc1(n, &lrows);CHKERRQ(ierr);
18186f0a72daSMatthew G. Knepley   for (r = 0; r < n; ++r) lrows[r] = -1;
18196f0a72daSMatthew G. Knepley   ierr = PetscMalloc1(N, &rrows);CHKERRQ(ierr);
18206f0a72daSMatthew G. Knepley   for (r = 0; r < N; ++r) {
18216f0a72daSMatthew G. Knepley     const PetscInt idx   = rows[r];
18225ba17502SJed Brown     if (idx < 0 || A->rmap->N <= idx) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row %D out of range [0,%D)",idx,A->rmap->N);
18235ba17502SJed Brown     if (idx < owners[p] || owners[p+1] <= idx) { /* short-circuit the search if the last p owns this row too */
18245ba17502SJed Brown       ierr = PetscLayoutFindOwner(A->rmap,idx,&p);CHKERRQ(ierr);
18255ba17502SJed Brown     }
18266f0a72daSMatthew G. Knepley     rrows[r].rank  = p;
18276f0a72daSMatthew G. Knepley     rrows[r].index = rows[r] - owners[p];
18286f0a72daSMatthew G. Knepley   }
18296f0a72daSMatthew G. Knepley   ierr = PetscSFCreate(PetscObjectComm((PetscObject) A), &sf);CHKERRQ(ierr);
18306f0a72daSMatthew G. Knepley   ierr = PetscSFSetGraph(sf, n, N, NULL, PETSC_OWN_POINTER, rrows, PETSC_OWN_POINTER);CHKERRQ(ierr);
18316f0a72daSMatthew G. Knepley   /* Collect flags for rows to be zeroed */
18326f0a72daSMatthew G. Knepley   ierr = PetscSFReduceBegin(sf, MPIU_INT, (PetscInt *) rows, lrows, MPI_LOR);CHKERRQ(ierr);
18336f0a72daSMatthew G. Knepley   ierr = PetscSFReduceEnd(sf, MPIU_INT, (PetscInt *) rows, lrows, MPI_LOR);CHKERRQ(ierr);
18346f0a72daSMatthew G. Knepley   ierr = PetscSFDestroy(&sf);CHKERRQ(ierr);
18356f0a72daSMatthew G. Knepley   /* Compress and put in row numbers */
18366f0a72daSMatthew G. Knepley   for (r = 0; r < n; ++r) if (lrows[r] >= 0) lrows[len++] = r;
18376f0a72daSMatthew G. Knepley   /* zero diagonal part of matrix */
18386f0a72daSMatthew G. Knepley   ierr = MatZeroRowsColumns(l->A,len,lrows,diag,x,b);CHKERRQ(ierr);
18396f0a72daSMatthew G. Knepley   /* handle off diagonal part of matrix */
18406f0a72daSMatthew G. Knepley   ierr = MatGetVecs(A,&xmask,NULL);CHKERRQ(ierr);
18416f0a72daSMatthew G. Knepley   ierr = VecDuplicate(l->lvec,&lmask);CHKERRQ(ierr);
18426f0a72daSMatthew G. Knepley   ierr = VecGetArray(xmask,&bb);CHKERRQ(ierr);
18436f0a72daSMatthew G. Knepley   for (i=0; i<len; i++) bb[lrows[i]] = 1;
18446f0a72daSMatthew G. Knepley   ierr = VecRestoreArray(xmask,&bb);CHKERRQ(ierr);
18456f0a72daSMatthew G. Knepley   ierr = VecScatterBegin(l->Mvctx,xmask,lmask,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
18466f0a72daSMatthew G. Knepley   ierr = VecScatterEnd(l->Mvctx,xmask,lmask,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
18476f0a72daSMatthew G. Knepley   ierr = VecDestroy(&xmask);CHKERRQ(ierr);
18486f0a72daSMatthew G. Knepley   if (x) {
18496f0a72daSMatthew G. Knepley     ierr = VecScatterBegin(l->Mvctx,x,l->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
18506f0a72daSMatthew G. Knepley     ierr = VecScatterEnd(l->Mvctx,x,l->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
18516f0a72daSMatthew G. Knepley     ierr = VecGetArrayRead(l->lvec,&xx);CHKERRQ(ierr);
18526f0a72daSMatthew G. Knepley     ierr = VecGetArray(b,&bb);CHKERRQ(ierr);
18536f0a72daSMatthew G. Knepley   }
18546f0a72daSMatthew G. Knepley   ierr = VecGetArray(lmask,&mask);CHKERRQ(ierr);
18556f0a72daSMatthew G. Knepley   /* remove zeroed rows of off diagonal matrix */
18566f0a72daSMatthew G. Knepley   for (i = 0; i < len; ++i) {
18576f0a72daSMatthew G. Knepley     row   = lrows[i];
18586f0a72daSMatthew G. Knepley     count = (baij->i[row/bs +1] - baij->i[row/bs])*bs;
18596f0a72daSMatthew G. Knepley     aa    = ((MatScalar*)(baij->a)) + baij->i[row/bs]*bs2 + (row%bs);
18606f0a72daSMatthew G. Knepley     for (k = 0; k < count; ++k) {
18616f0a72daSMatthew G. Knepley       aa[0] = 0.0;
18626f0a72daSMatthew G. Knepley       aa   += bs;
18636f0a72daSMatthew G. Knepley     }
18646f0a72daSMatthew G. Knepley   }
18656f0a72daSMatthew G. Knepley   /* loop over all elements of off process part of matrix zeroing removed columns*/
18666f0a72daSMatthew G. Knepley   for (i = 0; i < l->B->rmap->N; ++i) {
18676f0a72daSMatthew G. Knepley     row = i/bs;
18686f0a72daSMatthew G. Knepley     for (j = baij->i[row]; j < baij->i[row+1]; ++j) {
18696f0a72daSMatthew G. Knepley       for (k = 0; k < bs; ++k) {
18706f0a72daSMatthew G. Knepley         col = bs*baij->j[j] + k;
18716f0a72daSMatthew G. Knepley         if (PetscAbsScalar(mask[col])) {
18726f0a72daSMatthew G. Knepley           aa = ((MatScalar*)(baij->a)) + j*bs2 + (i%bs) + bs*k;
18736f0a72daSMatthew G. Knepley           if (b) bb[i] -= aa[0]*xx[col];
18746f0a72daSMatthew G. Knepley           aa[0] = 0.0;
18756f0a72daSMatthew G. Knepley         }
18766f0a72daSMatthew G. Knepley       }
18776f0a72daSMatthew G. Knepley     }
18786f0a72daSMatthew G. Knepley   }
18796f0a72daSMatthew G. Knepley   if (x) {
18806f0a72daSMatthew G. Knepley     ierr = VecRestoreArray(b,&bb);CHKERRQ(ierr);
18816f0a72daSMatthew G. Knepley     ierr = VecRestoreArrayRead(l->lvec,&xx);CHKERRQ(ierr);
18826f0a72daSMatthew G. Knepley   }
18836f0a72daSMatthew G. Knepley   ierr = VecRestoreArray(lmask,&mask);CHKERRQ(ierr);
18846f0a72daSMatthew G. Knepley   ierr = VecDestroy(&lmask);CHKERRQ(ierr);
18856f0a72daSMatthew G. Knepley   ierr = PetscFree(lrows);CHKERRQ(ierr);
18864f9cfa9eSBarry Smith 
18874f9cfa9eSBarry Smith   /* only change matrix nonzero state if pattern was allowed to be changed */
18884f9cfa9eSBarry Smith   if (!((Mat_SeqBAIJ*)(l->A->data))->keepnonzeropattern) {
18894f9cfa9eSBarry Smith     PetscObjectState state = l->A->nonzerostate + l->B->nonzerostate;
18904f9cfa9eSBarry Smith     ierr = MPI_Allreduce(&state,&A->nonzerostate,1,MPIU_INT64,MPI_SUM,PetscObjectComm((PetscObject)A));CHKERRQ(ierr);
18914f9cfa9eSBarry Smith   }
18926f0a72daSMatthew G. Knepley   PetscFunctionReturn(0);
18936f0a72daSMatthew G. Knepley }
18946f0a72daSMatthew G. Knepley 
18956f0a72daSMatthew G. Knepley #undef __FUNCT__
18964a2ae208SSatish Balay #define __FUNCT__ "MatSetUnfactored_MPIBAIJ"
1897dfbe8321SBarry Smith PetscErrorCode MatSetUnfactored_MPIBAIJ(Mat A)
1898bb5a7306SBarry Smith {
1899bb5a7306SBarry Smith   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)A->data;
1900dfbe8321SBarry Smith   PetscErrorCode ierr;
1901d64ed03dSBarry Smith 
1902d64ed03dSBarry Smith   PetscFunctionBegin;
1903bb5a7306SBarry Smith   ierr = MatSetUnfactored(a->A);CHKERRQ(ierr);
19043a40ed3dSBarry Smith   PetscFunctionReturn(0);
1905bb5a7306SBarry Smith }
1906bb5a7306SBarry Smith 
19076849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIBAIJ(Mat,MatDuplicateOption,Mat*);
19080ac07820SSatish Balay 
19094a2ae208SSatish Balay #undef __FUNCT__
19104a2ae208SSatish Balay #define __FUNCT__ "MatEqual_MPIBAIJ"
1911ace3abfcSBarry Smith PetscErrorCode MatEqual_MPIBAIJ(Mat A,Mat B,PetscBool  *flag)
19127fc3c18eSBarry Smith {
19137fc3c18eSBarry Smith   Mat_MPIBAIJ    *matB = (Mat_MPIBAIJ*)B->data,*matA = (Mat_MPIBAIJ*)A->data;
19147fc3c18eSBarry Smith   Mat            a,b,c,d;
1915ace3abfcSBarry Smith   PetscBool      flg;
1916dfbe8321SBarry Smith   PetscErrorCode ierr;
19177fc3c18eSBarry Smith 
19187fc3c18eSBarry Smith   PetscFunctionBegin;
19197fc3c18eSBarry Smith   a = matA->A; b = matA->B;
19207fc3c18eSBarry Smith   c = matB->A; d = matB->B;
19217fc3c18eSBarry Smith 
19227fc3c18eSBarry Smith   ierr = MatEqual(a,c,&flg);CHKERRQ(ierr);
1923abc0a331SBarry Smith   if (flg) {
19247fc3c18eSBarry Smith     ierr = MatEqual(b,d,&flg);CHKERRQ(ierr);
19257fc3c18eSBarry Smith   }
1926ce94432eSBarry Smith   ierr = MPI_Allreduce(&flg,flag,1,MPIU_BOOL,MPI_LAND,PetscObjectComm((PetscObject)A));CHKERRQ(ierr);
19277fc3c18eSBarry Smith   PetscFunctionReturn(0);
19287fc3c18eSBarry Smith }
19297fc3c18eSBarry Smith 
19303c896bc6SHong Zhang #undef __FUNCT__
19313c896bc6SHong Zhang #define __FUNCT__ "MatCopy_MPIBAIJ"
19323c896bc6SHong Zhang PetscErrorCode MatCopy_MPIBAIJ(Mat A,Mat B,MatStructure str)
19333c896bc6SHong Zhang {
19343c896bc6SHong Zhang   PetscErrorCode ierr;
19353c896bc6SHong Zhang   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)A->data;
19363c896bc6SHong Zhang   Mat_MPIBAIJ    *b = (Mat_MPIBAIJ*)B->data;
19373c896bc6SHong Zhang 
19383c896bc6SHong Zhang   PetscFunctionBegin;
19393c896bc6SHong Zhang   /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */
19403c896bc6SHong Zhang   if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) {
19413c896bc6SHong Zhang     ierr = MatCopy_Basic(A,B,str);CHKERRQ(ierr);
19423c896bc6SHong Zhang   } else {
19433c896bc6SHong Zhang     ierr = MatCopy(a->A,b->A,str);CHKERRQ(ierr);
19443c896bc6SHong Zhang     ierr = MatCopy(a->B,b->B,str);CHKERRQ(ierr);
19453c896bc6SHong Zhang   }
19463c896bc6SHong Zhang   PetscFunctionReturn(0);
19473c896bc6SHong Zhang }
1948273d9f13SBarry Smith 
19494a2ae208SSatish Balay #undef __FUNCT__
19504994cf47SJed Brown #define __FUNCT__ "MatSetUp_MPIBAIJ"
19514994cf47SJed Brown PetscErrorCode MatSetUp_MPIBAIJ(Mat A)
1952273d9f13SBarry Smith {
1953dfbe8321SBarry Smith   PetscErrorCode ierr;
1954273d9f13SBarry Smith 
1955273d9f13SBarry Smith   PetscFunctionBegin;
1956535b19f3SBarry Smith   ierr = MatMPIBAIJSetPreallocation(A,A->rmap->bs,PETSC_DEFAULT,0,PETSC_DEFAULT,0);CHKERRQ(ierr);
1957273d9f13SBarry Smith   PetscFunctionReturn(0);
1958273d9f13SBarry Smith }
1959273d9f13SBarry Smith 
19604fe895cdSHong Zhang #undef __FUNCT__
19614de5dceeSHong Zhang #define __FUNCT__ "MatAXPYGetPreallocation_MPIBAIJ"
19624de5dceeSHong Zhang PetscErrorCode MatAXPYGetPreallocation_MPIBAIJ(Mat Y,const PetscInt *yltog,Mat X,const PetscInt *xltog,PetscInt *nnz)
19634de5dceeSHong Zhang {
1964001ddc4fSHong Zhang   PetscErrorCode ierr;
1965001ddc4fSHong Zhang   PetscInt       bs = Y->rmap->bs,m = Y->rmap->N/bs;
19664de5dceeSHong Zhang   Mat_SeqBAIJ    *x = (Mat_SeqBAIJ*)X->data;
19674de5dceeSHong Zhang   Mat_SeqBAIJ    *y = (Mat_SeqBAIJ*)Y->data;
19684de5dceeSHong Zhang 
19694de5dceeSHong Zhang   PetscFunctionBegin;
1970001ddc4fSHong Zhang   ierr = MatAXPYGetPreallocation_MPIX_private(m,x->i,x->j,xltog,y->i,y->j,yltog,nnz);CHKERRQ(ierr);
19714de5dceeSHong Zhang   PetscFunctionReturn(0);
19724de5dceeSHong Zhang }
19734de5dceeSHong Zhang 
19744de5dceeSHong Zhang #undef __FUNCT__
19754fe895cdSHong Zhang #define __FUNCT__ "MatAXPY_MPIBAIJ"
19764fe895cdSHong Zhang PetscErrorCode MatAXPY_MPIBAIJ(Mat Y,PetscScalar a,Mat X,MatStructure str)
19774fe895cdSHong Zhang {
19784fe895cdSHong Zhang   PetscErrorCode ierr;
19794fe895cdSHong Zhang   Mat_MPIBAIJ    *xx=(Mat_MPIBAIJ*)X->data,*yy=(Mat_MPIBAIJ*)Y->data;
19804fe895cdSHong Zhang   PetscBLASInt   bnz,one=1;
19814fe895cdSHong Zhang   Mat_SeqBAIJ    *x,*y;
19824fe895cdSHong Zhang 
19834fe895cdSHong Zhang   PetscFunctionBegin;
19844fe895cdSHong Zhang   if (str == SAME_NONZERO_PATTERN) {
19854fe895cdSHong Zhang     PetscScalar alpha = a;
19864fe895cdSHong Zhang     x    = (Mat_SeqBAIJ*)xx->A->data;
19874fe895cdSHong Zhang     y    = (Mat_SeqBAIJ*)yy->A->data;
1988c5df96a5SBarry Smith     ierr = PetscBLASIntCast(x->nz,&bnz);CHKERRQ(ierr);
19898b83055fSJed Brown     PetscStackCallBLAS("BLASaxpy",BLASaxpy_(&bnz,&alpha,x->a,&one,y->a,&one));
19904fe895cdSHong Zhang     x    = (Mat_SeqBAIJ*)xx->B->data;
19914fe895cdSHong Zhang     y    = (Mat_SeqBAIJ*)yy->B->data;
1992c5df96a5SBarry Smith     ierr = PetscBLASIntCast(x->nz,&bnz);CHKERRQ(ierr);
19938b83055fSJed Brown     PetscStackCallBLAS("BLASaxpy",BLASaxpy_(&bnz,&alpha,x->a,&one,y->a,&one));
1994a3fa217bSJose E. Roman     ierr = PetscObjectStateIncrease((PetscObject)Y);CHKERRQ(ierr);
19954fe895cdSHong Zhang   } else {
19964de5dceeSHong Zhang     Mat      B;
19974de5dceeSHong Zhang     PetscInt *nnz_d,*nnz_o,bs=Y->rmap->bs;
19984de5dceeSHong Zhang     ierr = PetscMalloc1(yy->A->rmap->N,&nnz_d);CHKERRQ(ierr);
19994de5dceeSHong Zhang     ierr = PetscMalloc1(yy->B->rmap->N,&nnz_o);CHKERRQ(ierr);
20004de5dceeSHong Zhang     ierr = MatCreate(PetscObjectComm((PetscObject)Y),&B);CHKERRQ(ierr);
20014de5dceeSHong Zhang     ierr = PetscObjectSetName((PetscObject)B,((PetscObject)Y)->name);CHKERRQ(ierr);
20024de5dceeSHong Zhang     ierr = MatSetSizes(B,Y->rmap->n,Y->cmap->n,Y->rmap->N,Y->cmap->N);CHKERRQ(ierr);
20034de5dceeSHong Zhang     ierr = MatSetBlockSizesFromMats(B,Y,Y);CHKERRQ(ierr);
20044de5dceeSHong Zhang     ierr = MatSetType(B,MATMPIBAIJ);CHKERRQ(ierr);
20054de5dceeSHong Zhang     ierr = MatAXPYGetPreallocation_SeqBAIJ(yy->A,xx->A,nnz_d);CHKERRQ(ierr);
20064de5dceeSHong Zhang     ierr = MatAXPYGetPreallocation_MPIBAIJ(yy->B,yy->garray,xx->B,xx->garray,nnz_o);CHKERRQ(ierr);
20074de5dceeSHong Zhang     ierr = MatMPIBAIJSetPreallocation(B,bs,0,nnz_d,0,nnz_o);CHKERRQ(ierr);
20084de5dceeSHong Zhang     /* MatAXPY_BasicWithPreallocation() for BAIJ matrix is much slower than AIJ, even for bs=1 ! */
20094de5dceeSHong Zhang     ierr = MatAXPY_BasicWithPreallocation(B,Y,a,X,str);CHKERRQ(ierr);
20104de5dceeSHong Zhang     ierr = MatHeaderReplace(Y,B);CHKERRQ(ierr);
20114de5dceeSHong Zhang     ierr = PetscFree(nnz_d);CHKERRQ(ierr);
20124de5dceeSHong Zhang     ierr = PetscFree(nnz_o);CHKERRQ(ierr);
20134fe895cdSHong Zhang   }
20144fe895cdSHong Zhang   PetscFunctionReturn(0);
20154fe895cdSHong Zhang }
20164fe895cdSHong Zhang 
201799cafbc1SBarry Smith #undef __FUNCT__
201899cafbc1SBarry Smith #define __FUNCT__ "MatRealPart_MPIBAIJ"
201999cafbc1SBarry Smith PetscErrorCode MatRealPart_MPIBAIJ(Mat A)
202099cafbc1SBarry Smith {
202199cafbc1SBarry Smith   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)A->data;
202299cafbc1SBarry Smith   PetscErrorCode ierr;
202399cafbc1SBarry Smith 
202499cafbc1SBarry Smith   PetscFunctionBegin;
202599cafbc1SBarry Smith   ierr = MatRealPart(a->A);CHKERRQ(ierr);
202699cafbc1SBarry Smith   ierr = MatRealPart(a->B);CHKERRQ(ierr);
202799cafbc1SBarry Smith   PetscFunctionReturn(0);
202899cafbc1SBarry Smith }
202999cafbc1SBarry Smith 
203099cafbc1SBarry Smith #undef __FUNCT__
203199cafbc1SBarry Smith #define __FUNCT__ "MatImaginaryPart_MPIBAIJ"
203299cafbc1SBarry Smith PetscErrorCode MatImaginaryPart_MPIBAIJ(Mat A)
203399cafbc1SBarry Smith {
203499cafbc1SBarry Smith   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)A->data;
203599cafbc1SBarry Smith   PetscErrorCode ierr;
203699cafbc1SBarry Smith 
203799cafbc1SBarry Smith   PetscFunctionBegin;
203899cafbc1SBarry Smith   ierr = MatImaginaryPart(a->A);CHKERRQ(ierr);
203999cafbc1SBarry Smith   ierr = MatImaginaryPart(a->B);CHKERRQ(ierr);
204099cafbc1SBarry Smith   PetscFunctionReturn(0);
204199cafbc1SBarry Smith }
204299cafbc1SBarry Smith 
204382094794SBarry Smith #undef __FUNCT__
204482094794SBarry Smith #define __FUNCT__ "MatGetSubMatrix_MPIBAIJ"
20454aa3045dSJed Brown PetscErrorCode MatGetSubMatrix_MPIBAIJ(Mat mat,IS isrow,IS iscol,MatReuse call,Mat *newmat)
20464aa3045dSJed Brown {
20474aa3045dSJed Brown   PetscErrorCode ierr;
20484aa3045dSJed Brown   IS             iscol_local;
20494aa3045dSJed Brown   PetscInt       csize;
20504aa3045dSJed Brown 
20514aa3045dSJed Brown   PetscFunctionBegin;
20524aa3045dSJed Brown   ierr = ISGetLocalSize(iscol,&csize);CHKERRQ(ierr);
2053b79d0421SJed Brown   if (call == MAT_REUSE_MATRIX) {
2054b79d0421SJed Brown     ierr = PetscObjectQuery((PetscObject)*newmat,"ISAllGather",(PetscObject*)&iscol_local);CHKERRQ(ierr);
2055e32f2f54SBarry Smith     if (!iscol_local) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Submatrix passed in was not used before, cannot reuse");
2056b79d0421SJed Brown   } else {
20574aa3045dSJed Brown     ierr = ISAllGather(iscol,&iscol_local);CHKERRQ(ierr);
2058b79d0421SJed Brown   }
20594aa3045dSJed Brown   ierr = MatGetSubMatrix_MPIBAIJ_Private(mat,isrow,iscol_local,csize,call,newmat);CHKERRQ(ierr);
2060b79d0421SJed Brown   if (call == MAT_INITIAL_MATRIX) {
2061b79d0421SJed Brown     ierr = PetscObjectCompose((PetscObject)*newmat,"ISAllGather",(PetscObject)iscol_local);CHKERRQ(ierr);
20626bf464f9SBarry Smith     ierr = ISDestroy(&iscol_local);CHKERRQ(ierr);
2063b79d0421SJed Brown   }
20644aa3045dSJed Brown   PetscFunctionReturn(0);
20654aa3045dSJed Brown }
206629dcf524SDmitry Karpeev extern PetscErrorCode MatGetSubMatrices_MPIBAIJ_local(Mat,PetscInt,const IS[],const IS[],MatReuse,PetscBool*,PetscBool*,Mat*);
20674aa3045dSJed Brown #undef __FUNCT__
2068dd183c9eSJed Brown #define __FUNCT__ "MatGetSubMatrix_MPIBAIJ_Private"
206982094794SBarry Smith /*
207082094794SBarry Smith   Not great since it makes two copies of the submatrix, first an SeqBAIJ
207182094794SBarry Smith   in local and then by concatenating the local matrices the end result.
207282094794SBarry Smith   Writing it directly would be much like MatGetSubMatrices_MPIBAIJ()
207382094794SBarry Smith */
20744aa3045dSJed Brown PetscErrorCode MatGetSubMatrix_MPIBAIJ_Private(Mat mat,IS isrow,IS iscol,PetscInt csize,MatReuse call,Mat *newmat)
207582094794SBarry Smith {
207682094794SBarry Smith   PetscErrorCode ierr;
207782094794SBarry Smith   PetscMPIInt    rank,size;
207882094794SBarry Smith   PetscInt       i,m,n,rstart,row,rend,nz,*cwork,j,bs;
207929dcf524SDmitry Karpeev   PetscInt       *ii,*jj,nlocal,*dlens,*olens,dlen,olen,jend,mglobal,ncol,nrow;
208029dcf524SDmitry Karpeev   Mat            M,Mreuse;
208182094794SBarry Smith   MatScalar      *vwork,*aa;
2082ce94432eSBarry Smith   MPI_Comm       comm;
208329dcf524SDmitry Karpeev   IS             isrow_new, iscol_new;
208429dcf524SDmitry Karpeev   PetscBool      idflag,allrows, allcols;
208582094794SBarry Smith   Mat_SeqBAIJ    *aij;
208682094794SBarry Smith 
208782094794SBarry Smith   PetscFunctionBegin;
2088ce94432eSBarry Smith   ierr = PetscObjectGetComm((PetscObject)mat,&comm);CHKERRQ(ierr);
208982094794SBarry Smith   ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr);
209082094794SBarry Smith   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
209129dcf524SDmitry Karpeev   /* The compression and expansion should be avoided. Doesn't point
209229dcf524SDmitry Karpeev      out errors, might change the indices, hence buggey */
209329dcf524SDmitry Karpeev   ierr = ISCompressIndicesGeneral(mat->rmap->N,mat->rmap->n,mat->rmap->bs,1,&isrow,&isrow_new);CHKERRQ(ierr);
209429dcf524SDmitry Karpeev   ierr = ISCompressIndicesGeneral(mat->cmap->N,mat->cmap->n,mat->cmap->bs,1,&iscol,&iscol_new);CHKERRQ(ierr);
209582094794SBarry Smith 
209629dcf524SDmitry Karpeev   /* Check for special case: each processor gets entire matrix columns */
209729dcf524SDmitry Karpeev   ierr = ISIdentity(iscol,&idflag);CHKERRQ(ierr);
209829dcf524SDmitry Karpeev   ierr = ISGetLocalSize(iscol,&ncol);CHKERRQ(ierr);
209926fbe8dcSKarl Rupp   if (idflag && ncol == mat->cmap->N) allcols = PETSC_TRUE;
210026fbe8dcSKarl Rupp   else allcols = PETSC_FALSE;
210129dcf524SDmitry Karpeev 
210229dcf524SDmitry Karpeev   ierr = ISIdentity(isrow,&idflag);CHKERRQ(ierr);
210329dcf524SDmitry Karpeev   ierr = ISGetLocalSize(isrow,&nrow);CHKERRQ(ierr);
210426fbe8dcSKarl Rupp   if (idflag && nrow == mat->rmap->N) allrows = PETSC_TRUE;
210526fbe8dcSKarl Rupp   else allrows = PETSC_FALSE;
210626fbe8dcSKarl Rupp 
210782094794SBarry Smith   if (call ==  MAT_REUSE_MATRIX) {
210882094794SBarry Smith     ierr = PetscObjectQuery((PetscObject)*newmat,"SubMatrix",(PetscObject*)&Mreuse);CHKERRQ(ierr);
2109e32f2f54SBarry Smith     if (!Mreuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Submatrix passed in was not used before, cannot reuse");
211075f6568bSJed Brown     ierr = MatGetSubMatrices_MPIBAIJ_local(mat,1,&isrow_new,&iscol_new,MAT_REUSE_MATRIX,&allrows,&allcols,&Mreuse);CHKERRQ(ierr);
211182094794SBarry Smith   } else {
211275f6568bSJed Brown     ierr = MatGetSubMatrices_MPIBAIJ_local(mat,1,&isrow_new,&iscol_new,MAT_INITIAL_MATRIX,&allrows,&allcols,&Mreuse);CHKERRQ(ierr);
211382094794SBarry Smith   }
211429dcf524SDmitry Karpeev   ierr = ISDestroy(&isrow_new);CHKERRQ(ierr);
211529dcf524SDmitry Karpeev   ierr = ISDestroy(&iscol_new);CHKERRQ(ierr);
211682094794SBarry Smith   /*
211782094794SBarry Smith       m - number of local rows
211882094794SBarry Smith       n - number of columns (same on all processors)
211982094794SBarry Smith       rstart - first row in new global matrix generated
212082094794SBarry Smith   */
212182094794SBarry Smith   ierr = MatGetBlockSize(mat,&bs);CHKERRQ(ierr);
212282094794SBarry Smith   ierr = MatGetSize(Mreuse,&m,&n);CHKERRQ(ierr);
212382094794SBarry Smith   m    = m/bs;
212482094794SBarry Smith   n    = n/bs;
212582094794SBarry Smith 
212682094794SBarry Smith   if (call == MAT_INITIAL_MATRIX) {
212782094794SBarry Smith     aij = (Mat_SeqBAIJ*)(Mreuse)->data;
212882094794SBarry Smith     ii  = aij->i;
212982094794SBarry Smith     jj  = aij->j;
213082094794SBarry Smith 
213182094794SBarry Smith     /*
213282094794SBarry Smith         Determine the number of non-zeros in the diagonal and off-diagonal
213382094794SBarry Smith         portions of the matrix in order to do correct preallocation
213482094794SBarry Smith     */
213582094794SBarry Smith 
213682094794SBarry Smith     /* first get start and end of "diagonal" columns */
213782094794SBarry Smith     if (csize == PETSC_DECIDE) {
213882094794SBarry Smith       ierr = ISGetSize(isrow,&mglobal);CHKERRQ(ierr);
213982094794SBarry Smith       if (mglobal == n*bs) { /* square matrix */
214082094794SBarry Smith         nlocal = m;
214182094794SBarry Smith       } else {
214282094794SBarry Smith         nlocal = n/size + ((n % size) > rank);
214382094794SBarry Smith       }
214482094794SBarry Smith     } else {
214582094794SBarry Smith       nlocal = csize/bs;
214682094794SBarry Smith     }
214782094794SBarry Smith     ierr   = MPI_Scan(&nlocal,&rend,1,MPIU_INT,MPI_SUM,comm);CHKERRQ(ierr);
214882094794SBarry Smith     rstart = rend - nlocal;
214965e19b50SBarry Smith     if (rank == size - 1 && rend != n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Local column sizes %D do not add up to total number of columns %D",rend,n);
215082094794SBarry Smith 
215182094794SBarry Smith     /* next, compute all the lengths */
2152dcca6d9dSJed Brown     ierr  = PetscMalloc2(m+1,&dlens,m+1,&olens);CHKERRQ(ierr);
215382094794SBarry Smith     for (i=0; i<m; i++) {
215482094794SBarry Smith       jend = ii[i+1] - ii[i];
215582094794SBarry Smith       olen = 0;
215682094794SBarry Smith       dlen = 0;
215782094794SBarry Smith       for (j=0; j<jend; j++) {
215882094794SBarry Smith         if (*jj < rstart || *jj >= rend) olen++;
215982094794SBarry Smith         else dlen++;
216082094794SBarry Smith         jj++;
216182094794SBarry Smith       }
216282094794SBarry Smith       olens[i] = olen;
216382094794SBarry Smith       dlens[i] = dlen;
216482094794SBarry Smith     }
216582094794SBarry Smith     ierr = MatCreate(comm,&M);CHKERRQ(ierr);
216682094794SBarry Smith     ierr = MatSetSizes(M,bs*m,bs*nlocal,PETSC_DECIDE,bs*n);CHKERRQ(ierr);
216782094794SBarry Smith     ierr = MatSetType(M,((PetscObject)mat)->type_name);CHKERRQ(ierr);
216882094794SBarry Smith     ierr = MatMPIBAIJSetPreallocation(M,bs,0,dlens,0,olens);CHKERRQ(ierr);
2169eb9baa12SBarry Smith     ierr = PetscFree2(dlens,olens);CHKERRQ(ierr);
217082094794SBarry Smith   } else {
217182094794SBarry Smith     PetscInt ml,nl;
217282094794SBarry Smith 
217382094794SBarry Smith     M    = *newmat;
217482094794SBarry Smith     ierr = MatGetLocalSize(M,&ml,&nl);CHKERRQ(ierr);
2175e32f2f54SBarry Smith     if (ml != m) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Previous matrix must be same size/layout as request");
217682094794SBarry Smith     ierr = MatZeroEntries(M);CHKERRQ(ierr);
217782094794SBarry Smith     /*
217882094794SBarry Smith          The next two lines are needed so we may call MatSetValues_MPIAIJ() below directly,
217982094794SBarry Smith        rather than the slower MatSetValues().
218082094794SBarry Smith     */
218182094794SBarry Smith     M->was_assembled = PETSC_TRUE;
218282094794SBarry Smith     M->assembled     = PETSC_FALSE;
218382094794SBarry Smith   }
218482094794SBarry Smith   ierr = MatSetOption(M,MAT_ROW_ORIENTED,PETSC_FALSE);CHKERRQ(ierr);
218582094794SBarry Smith   ierr = MatGetOwnershipRange(M,&rstart,&rend);CHKERRQ(ierr);
218682094794SBarry Smith   aij  = (Mat_SeqBAIJ*)(Mreuse)->data;
218782094794SBarry Smith   ii   = aij->i;
218882094794SBarry Smith   jj   = aij->j;
218982094794SBarry Smith   aa   = aij->a;
219082094794SBarry Smith   for (i=0; i<m; i++) {
219182094794SBarry Smith     row   = rstart/bs + i;
219282094794SBarry Smith     nz    = ii[i+1] - ii[i];
219382094794SBarry Smith     cwork = jj;     jj += nz;
219475f6568bSJed Brown     vwork = aa;     aa += nz*bs*bs;
219582094794SBarry Smith     ierr  = MatSetValuesBlocked_MPIBAIJ(M,1,&row,nz,cwork,vwork,INSERT_VALUES);CHKERRQ(ierr);
219682094794SBarry Smith   }
219782094794SBarry Smith 
219882094794SBarry Smith   ierr    = MatAssemblyBegin(M,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
219982094794SBarry Smith   ierr    = MatAssemblyEnd(M,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
220082094794SBarry Smith   *newmat = M;
220182094794SBarry Smith 
220282094794SBarry Smith   /* save submatrix used in processor for next request */
220382094794SBarry Smith   if (call ==  MAT_INITIAL_MATRIX) {
220482094794SBarry Smith     ierr = PetscObjectCompose((PetscObject)M,"SubMatrix",(PetscObject)Mreuse);CHKERRQ(ierr);
220582094794SBarry Smith     ierr = PetscObjectDereference((PetscObject)Mreuse);CHKERRQ(ierr);
220682094794SBarry Smith   }
220782094794SBarry Smith   PetscFunctionReturn(0);
220882094794SBarry Smith }
220982094794SBarry Smith 
221082094794SBarry Smith #undef __FUNCT__
221182094794SBarry Smith #define __FUNCT__ "MatPermute_MPIBAIJ"
221282094794SBarry Smith PetscErrorCode MatPermute_MPIBAIJ(Mat A,IS rowp,IS colp,Mat *B)
221382094794SBarry Smith {
221482094794SBarry Smith   MPI_Comm       comm,pcomm;
2215a0a83eb5SRémi Lacroix   PetscInt       clocal_size,nrows;
221682094794SBarry Smith   const PetscInt *rows;
2217dbf0e21dSBarry Smith   PetscMPIInt    size;
2218a0a83eb5SRémi Lacroix   IS             crowp,lcolp;
221982094794SBarry Smith   PetscErrorCode ierr;
222082094794SBarry Smith 
222182094794SBarry Smith   PetscFunctionBegin;
222282094794SBarry Smith   ierr = PetscObjectGetComm((PetscObject)A,&comm);CHKERRQ(ierr);
222382094794SBarry Smith   /* make a collective version of 'rowp' */
222482094794SBarry Smith   ierr = PetscObjectGetComm((PetscObject)rowp,&pcomm);CHKERRQ(ierr);
222582094794SBarry Smith   if (pcomm==comm) {
222682094794SBarry Smith     crowp = rowp;
222782094794SBarry Smith   } else {
222882094794SBarry Smith     ierr = ISGetSize(rowp,&nrows);CHKERRQ(ierr);
222982094794SBarry Smith     ierr = ISGetIndices(rowp,&rows);CHKERRQ(ierr);
223070b3c8c7SBarry Smith     ierr = ISCreateGeneral(comm,nrows,rows,PETSC_COPY_VALUES,&crowp);CHKERRQ(ierr);
223182094794SBarry Smith     ierr = ISRestoreIndices(rowp,&rows);CHKERRQ(ierr);
223282094794SBarry Smith   }
2233a0a83eb5SRémi Lacroix   ierr = ISSetPermutation(crowp);CHKERRQ(ierr);
2234a0a83eb5SRémi Lacroix   /* make a local version of 'colp' */
223582094794SBarry Smith   ierr = PetscObjectGetComm((PetscObject)colp,&pcomm);CHKERRQ(ierr);
2236dbf0e21dSBarry Smith   ierr = MPI_Comm_size(pcomm,&size);CHKERRQ(ierr);
2237dbf0e21dSBarry Smith   if (size==1) {
223882094794SBarry Smith     lcolp = colp;
223982094794SBarry Smith   } else {
224075f6568bSJed Brown     ierr = ISAllGather(colp,&lcolp);CHKERRQ(ierr);
224182094794SBarry Smith   }
2242dbf0e21dSBarry Smith   ierr = ISSetPermutation(lcolp);CHKERRQ(ierr);
224375f6568bSJed Brown   /* now we just get the submatrix */
22447afc1a8bSJed Brown   ierr = MatGetLocalSize(A,NULL,&clocal_size);CHKERRQ(ierr);
2245a0a83eb5SRémi Lacroix   ierr = MatGetSubMatrix_MPIBAIJ_Private(A,crowp,lcolp,clocal_size,MAT_INITIAL_MATRIX,B);CHKERRQ(ierr);
2246a0a83eb5SRémi Lacroix   /* clean up */
2247a0a83eb5SRémi Lacroix   if (pcomm!=comm) {
2248a0a83eb5SRémi Lacroix     ierr = ISDestroy(&crowp);CHKERRQ(ierr);
2249a0a83eb5SRémi Lacroix   }
2250dbf0e21dSBarry Smith   if (size>1) {
22516bf464f9SBarry Smith     ierr = ISDestroy(&lcolp);CHKERRQ(ierr);
225282094794SBarry Smith   }
225382094794SBarry Smith   PetscFunctionReturn(0);
225482094794SBarry Smith }
225582094794SBarry Smith 
22568c7482ecSBarry Smith #undef __FUNCT__
22578c7482ecSBarry Smith #define __FUNCT__ "MatGetGhosts_MPIBAIJ"
22587087cfbeSBarry Smith PetscErrorCode  MatGetGhosts_MPIBAIJ(Mat mat,PetscInt *nghosts,const PetscInt *ghosts[])
22598c7482ecSBarry Smith {
22608c7482ecSBarry Smith   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*) mat->data;
22618c7482ecSBarry Smith   Mat_SeqBAIJ *B    = (Mat_SeqBAIJ*)baij->B->data;
22628c7482ecSBarry Smith 
22638c7482ecSBarry Smith   PetscFunctionBegin;
226426fbe8dcSKarl Rupp   if (nghosts) *nghosts = B->nbs;
226526fbe8dcSKarl Rupp   if (ghosts) *ghosts = baij->garray;
22668c7482ecSBarry Smith   PetscFunctionReturn(0);
22678c7482ecSBarry Smith }
22688c7482ecSBarry Smith 
2269f6d58c54SBarry Smith #undef __FUNCT__
2270d1adec66SJed Brown #define __FUNCT__ "MatGetSeqNonzeroStructure_MPIBAIJ"
2271d1adec66SJed Brown PetscErrorCode MatGetSeqNonzeroStructure_MPIBAIJ(Mat A,Mat *newmat)
2272f6d58c54SBarry Smith {
2273f6d58c54SBarry Smith   Mat            B;
2274f6d58c54SBarry Smith   Mat_MPIBAIJ    *a  = (Mat_MPIBAIJ*)A->data;
2275f6d58c54SBarry Smith   Mat_SeqBAIJ    *ad = (Mat_SeqBAIJ*)a->A->data,*bd = (Mat_SeqBAIJ*)a->B->data;
2276f6d58c54SBarry Smith   Mat_SeqAIJ     *b;
2277f6d58c54SBarry Smith   PetscErrorCode ierr;
2278f6d58c54SBarry Smith   PetscMPIInt    size,rank,*recvcounts = 0,*displs = 0;
2279f6d58c54SBarry Smith   PetscInt       sendcount,i,*rstarts = A->rmap->range,n,cnt,j,bs = A->rmap->bs;
2280f6d58c54SBarry Smith   PetscInt       m,*garray = a->garray,*lens,*jsendbuf,*a_jsendbuf,*b_jsendbuf;
2281f6d58c54SBarry Smith 
2282f6d58c54SBarry Smith   PetscFunctionBegin;
2283ce94432eSBarry Smith   ierr = MPI_Comm_size(PetscObjectComm((PetscObject)A),&size);CHKERRQ(ierr);
2284ce94432eSBarry Smith   ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)A),&rank);CHKERRQ(ierr);
2285f6d58c54SBarry Smith 
2286f6d58c54SBarry Smith   /* ----------------------------------------------------------------
2287f6d58c54SBarry Smith      Tell every processor the number of nonzeros per row
2288f6d58c54SBarry Smith   */
2289785e854fSJed Brown   ierr = PetscMalloc1((A->rmap->N/bs),&lens);CHKERRQ(ierr);
2290f6d58c54SBarry Smith   for (i=A->rmap->rstart/bs; i<A->rmap->rend/bs; i++) {
2291f6d58c54SBarry Smith     lens[i] = ad->i[i-A->rmap->rstart/bs+1] - ad->i[i-A->rmap->rstart/bs] + bd->i[i-A->rmap->rstart/bs+1] - bd->i[i-A->rmap->rstart/bs];
2292f6d58c54SBarry Smith   }
2293f6d58c54SBarry Smith   sendcount = A->rmap->rend/bs - A->rmap->rstart/bs;
2294785e854fSJed Brown   ierr      = PetscMalloc1(2*size,&recvcounts);CHKERRQ(ierr);
2295f6d58c54SBarry Smith   displs    = recvcounts + size;
2296f6d58c54SBarry Smith   for (i=0; i<size; i++) {
2297f6d58c54SBarry Smith     recvcounts[i] = A->rmap->range[i+1]/bs - A->rmap->range[i]/bs;
2298f6d58c54SBarry Smith     displs[i]     = A->rmap->range[i]/bs;
2299f6d58c54SBarry Smith   }
2300f6d58c54SBarry Smith #if defined(PETSC_HAVE_MPI_IN_PLACE)
2301ce94432eSBarry Smith   ierr = MPI_Allgatherv(MPI_IN_PLACE,0,MPI_DATATYPE_NULL,lens,recvcounts,displs,MPIU_INT,PetscObjectComm((PetscObject)A));CHKERRQ(ierr);
2302f6d58c54SBarry Smith #else
2303ce94432eSBarry Smith   ierr = MPI_Allgatherv(lens+A->rmap->rstart/bs,sendcount,MPIU_INT,lens,recvcounts,displs,MPIU_INT,PetscObjectComm((PetscObject)A));CHKERRQ(ierr);
2304f6d58c54SBarry Smith #endif
2305f6d58c54SBarry Smith   /* ---------------------------------------------------------------
2306f6d58c54SBarry Smith      Create the sequential matrix of the same type as the local block diagonal
2307f6d58c54SBarry Smith   */
2308f6d58c54SBarry Smith   ierr = MatCreate(PETSC_COMM_SELF,&B);CHKERRQ(ierr);
2309f6d58c54SBarry Smith   ierr = MatSetSizes(B,A->rmap->N/bs,A->cmap->N/bs,PETSC_DETERMINE,PETSC_DETERMINE);CHKERRQ(ierr);
2310f6d58c54SBarry Smith   ierr = MatSetType(B,MATSEQAIJ);CHKERRQ(ierr);
2311f6d58c54SBarry Smith   ierr = MatSeqAIJSetPreallocation(B,0,lens);CHKERRQ(ierr);
2312f6d58c54SBarry Smith   b    = (Mat_SeqAIJ*)B->data;
2313f6d58c54SBarry Smith 
2314f6d58c54SBarry Smith   /*--------------------------------------------------------------------
2315f6d58c54SBarry Smith     Copy my part of matrix column indices over
2316f6d58c54SBarry Smith   */
2317f6d58c54SBarry Smith   sendcount  = ad->nz + bd->nz;
2318f6d58c54SBarry Smith   jsendbuf   = b->j + b->i[rstarts[rank]/bs];
2319f6d58c54SBarry Smith   a_jsendbuf = ad->j;
2320f6d58c54SBarry Smith   b_jsendbuf = bd->j;
2321f6d58c54SBarry Smith   n          = A->rmap->rend/bs - A->rmap->rstart/bs;
2322f6d58c54SBarry Smith   cnt        = 0;
2323f6d58c54SBarry Smith   for (i=0; i<n; i++) {
2324f6d58c54SBarry Smith 
2325f6d58c54SBarry Smith     /* put in lower diagonal portion */
2326f6d58c54SBarry Smith     m = bd->i[i+1] - bd->i[i];
2327f6d58c54SBarry Smith     while (m > 0) {
2328f6d58c54SBarry Smith       /* is it above diagonal (in bd (compressed) numbering) */
2329f6d58c54SBarry Smith       if (garray[*b_jsendbuf] > A->rmap->rstart/bs + i) break;
2330f6d58c54SBarry Smith       jsendbuf[cnt++] = garray[*b_jsendbuf++];
2331f6d58c54SBarry Smith       m--;
2332f6d58c54SBarry Smith     }
2333f6d58c54SBarry Smith 
2334f6d58c54SBarry Smith     /* put in diagonal portion */
2335f6d58c54SBarry Smith     for (j=ad->i[i]; j<ad->i[i+1]; j++) {
2336f6d58c54SBarry Smith       jsendbuf[cnt++] = A->rmap->rstart/bs + *a_jsendbuf++;
2337f6d58c54SBarry Smith     }
2338f6d58c54SBarry Smith 
2339f6d58c54SBarry Smith     /* put in upper diagonal portion */
2340f6d58c54SBarry Smith     while (m-- > 0) {
2341f6d58c54SBarry Smith       jsendbuf[cnt++] = garray[*b_jsendbuf++];
2342f6d58c54SBarry Smith     }
2343f6d58c54SBarry Smith   }
2344e32f2f54SBarry Smith   if (cnt != sendcount) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Corrupted PETSc matrix: nz given %D actual nz %D",sendcount,cnt);
2345f6d58c54SBarry Smith 
2346f6d58c54SBarry Smith   /*--------------------------------------------------------------------
2347f6d58c54SBarry Smith     Gather all column indices to all processors
2348f6d58c54SBarry Smith   */
2349f6d58c54SBarry Smith   for (i=0; i<size; i++) {
2350f6d58c54SBarry Smith     recvcounts[i] = 0;
2351f6d58c54SBarry Smith     for (j=A->rmap->range[i]/bs; j<A->rmap->range[i+1]/bs; j++) {
2352f6d58c54SBarry Smith       recvcounts[i] += lens[j];
2353f6d58c54SBarry Smith     }
2354f6d58c54SBarry Smith   }
2355f6d58c54SBarry Smith   displs[0] = 0;
2356f6d58c54SBarry Smith   for (i=1; i<size; i++) {
2357f6d58c54SBarry Smith     displs[i] = displs[i-1] + recvcounts[i-1];
2358f6d58c54SBarry Smith   }
2359f6d58c54SBarry Smith #if defined(PETSC_HAVE_MPI_IN_PLACE)
2360ce94432eSBarry Smith   ierr = MPI_Allgatherv(MPI_IN_PLACE,0,MPI_DATATYPE_NULL,b->j,recvcounts,displs,MPIU_INT,PetscObjectComm((PetscObject)A));CHKERRQ(ierr);
2361f6d58c54SBarry Smith #else
2362ce94432eSBarry Smith   ierr = MPI_Allgatherv(jsendbuf,sendcount,MPIU_INT,b->j,recvcounts,displs,MPIU_INT,PetscObjectComm((PetscObject)A));CHKERRQ(ierr);
2363f6d58c54SBarry Smith #endif
2364f6d58c54SBarry Smith   /*--------------------------------------------------------------------
2365f6d58c54SBarry Smith     Assemble the matrix into useable form (note numerical values not yet set)
2366f6d58c54SBarry Smith   */
2367f6d58c54SBarry Smith   /* set the b->ilen (length of each row) values */
2368f6d58c54SBarry Smith   ierr = PetscMemcpy(b->ilen,lens,(A->rmap->N/bs)*sizeof(PetscInt));CHKERRQ(ierr);
2369f6d58c54SBarry Smith   /* set the b->i indices */
2370f6d58c54SBarry Smith   b->i[0] = 0;
2371f6d58c54SBarry Smith   for (i=1; i<=A->rmap->N/bs; i++) {
2372f6d58c54SBarry Smith     b->i[i] = b->i[i-1] + lens[i-1];
2373f6d58c54SBarry Smith   }
2374f6d58c54SBarry Smith   ierr = PetscFree(lens);CHKERRQ(ierr);
2375f6d58c54SBarry Smith   ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
2376f6d58c54SBarry Smith   ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
2377f6d58c54SBarry Smith   ierr = PetscFree(recvcounts);CHKERRQ(ierr);
2378f6d58c54SBarry Smith 
2379f6d58c54SBarry Smith   if (A->symmetric) {
2380f6d58c54SBarry Smith     ierr = MatSetOption(B,MAT_SYMMETRIC,PETSC_TRUE);CHKERRQ(ierr);
2381f6d58c54SBarry Smith   } else if (A->hermitian) {
2382f6d58c54SBarry Smith     ierr = MatSetOption(B,MAT_HERMITIAN,PETSC_TRUE);CHKERRQ(ierr);
2383f6d58c54SBarry Smith   } else if (A->structurally_symmetric) {
2384f6d58c54SBarry Smith     ierr = MatSetOption(B,MAT_STRUCTURALLY_SYMMETRIC,PETSC_TRUE);CHKERRQ(ierr);
2385f6d58c54SBarry Smith   }
2386f6d58c54SBarry Smith   *newmat = B;
2387f6d58c54SBarry Smith   PetscFunctionReturn(0);
2388f6d58c54SBarry Smith }
2389f6d58c54SBarry Smith 
2390b1a666ecSBarry Smith #undef __FUNCT__
2391b1a666ecSBarry Smith #define __FUNCT__ "MatSOR_MPIBAIJ"
2392b1a666ecSBarry Smith PetscErrorCode MatSOR_MPIBAIJ(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx)
2393b1a666ecSBarry Smith {
2394b1a666ecSBarry Smith   Mat_MPIBAIJ    *mat = (Mat_MPIBAIJ*)matin->data;
2395b1a666ecSBarry Smith   PetscErrorCode ierr;
2396b1a666ecSBarry Smith   Vec            bb1 = 0;
2397b1a666ecSBarry Smith 
2398b1a666ecSBarry Smith   PetscFunctionBegin;
2399b1a666ecSBarry Smith   if (flag == SOR_APPLY_UPPER) {
2400b1a666ecSBarry Smith     ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr);
2401b1a666ecSBarry Smith     PetscFunctionReturn(0);
2402b1a666ecSBarry Smith   }
2403b1a666ecSBarry Smith 
24044e980039SJed Brown   if (its > 1 || ~flag & SOR_ZERO_INITIAL_GUESS) {
24054e980039SJed Brown     ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr);
24064e980039SJed Brown   }
24074e980039SJed Brown 
2408b1a666ecSBarry Smith   if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP) {
2409b1a666ecSBarry Smith     if (flag & SOR_ZERO_INITIAL_GUESS) {
2410b1a666ecSBarry Smith       ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr);
2411b1a666ecSBarry Smith       its--;
2412b1a666ecSBarry Smith     }
2413b1a666ecSBarry Smith 
2414b1a666ecSBarry Smith     while (its--) {
2415b1a666ecSBarry Smith       ierr = VecScatterBegin(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
2416b1a666ecSBarry Smith       ierr = VecScatterEnd(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
2417b1a666ecSBarry Smith 
2418b1a666ecSBarry Smith       /* update rhs: bb1 = bb - B*x */
2419b1a666ecSBarry Smith       ierr = VecScale(mat->lvec,-1.0);CHKERRQ(ierr);
2420b1a666ecSBarry Smith       ierr = (*mat->B->ops->multadd)(mat->B,mat->lvec,bb,bb1);CHKERRQ(ierr);
2421b1a666ecSBarry Smith 
2422b1a666ecSBarry Smith       /* local sweep */
2423b1a666ecSBarry Smith       ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,1,xx);CHKERRQ(ierr);
2424b1a666ecSBarry Smith     }
2425b1a666ecSBarry Smith   } else if (flag & SOR_LOCAL_FORWARD_SWEEP) {
2426b1a666ecSBarry Smith     if (flag & SOR_ZERO_INITIAL_GUESS) {
2427b1a666ecSBarry Smith       ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr);
2428b1a666ecSBarry Smith       its--;
2429b1a666ecSBarry Smith     }
2430b1a666ecSBarry Smith     while (its--) {
2431b1a666ecSBarry Smith       ierr = VecScatterBegin(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
2432b1a666ecSBarry Smith       ierr = VecScatterEnd(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
2433b1a666ecSBarry Smith 
2434b1a666ecSBarry Smith       /* update rhs: bb1 = bb - B*x */
2435b1a666ecSBarry Smith       ierr = VecScale(mat->lvec,-1.0);CHKERRQ(ierr);
2436b1a666ecSBarry Smith       ierr = (*mat->B->ops->multadd)(mat->B,mat->lvec,bb,bb1);CHKERRQ(ierr);
2437b1a666ecSBarry Smith 
2438b1a666ecSBarry Smith       /* local sweep */
2439b1a666ecSBarry Smith       ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_FORWARD_SWEEP,fshift,lits,1,xx);CHKERRQ(ierr);
2440b1a666ecSBarry Smith     }
2441b1a666ecSBarry Smith   } else if (flag & SOR_LOCAL_BACKWARD_SWEEP) {
2442b1a666ecSBarry Smith     if (flag & SOR_ZERO_INITIAL_GUESS) {
2443b1a666ecSBarry Smith       ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr);
2444b1a666ecSBarry Smith       its--;
2445b1a666ecSBarry Smith     }
2446b1a666ecSBarry Smith     while (its--) {
2447b1a666ecSBarry Smith       ierr = VecScatterBegin(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
2448b1a666ecSBarry Smith       ierr = VecScatterEnd(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
2449b1a666ecSBarry Smith 
2450b1a666ecSBarry Smith       /* update rhs: bb1 = bb - B*x */
2451b1a666ecSBarry Smith       ierr = VecScale(mat->lvec,-1.0);CHKERRQ(ierr);
2452b1a666ecSBarry Smith       ierr = (*mat->B->ops->multadd)(mat->B,mat->lvec,bb,bb1);CHKERRQ(ierr);
2453b1a666ecSBarry Smith 
2454b1a666ecSBarry Smith       /* local sweep */
2455b1a666ecSBarry Smith       ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_BACKWARD_SWEEP,fshift,lits,1,xx);CHKERRQ(ierr);
2456b1a666ecSBarry Smith     }
2457ce94432eSBarry Smith   } else SETERRQ(PetscObjectComm((PetscObject)matin),PETSC_ERR_SUP,"Parallel version of SOR requested not supported");
2458b1a666ecSBarry Smith 
24596bf464f9SBarry Smith   ierr = VecDestroy(&bb1);CHKERRQ(ierr);
2460b1a666ecSBarry Smith   PetscFunctionReturn(0);
2461b1a666ecSBarry Smith }
2462b1a666ecSBarry Smith 
2463bbead8a2SBarry Smith #undef __FUNCT__
246447f7623dSRémi Lacroix #define __FUNCT__ "MatGetColumnNorms_MPIBAIJ"
246547f7623dSRémi Lacroix PetscErrorCode MatGetColumnNorms_MPIBAIJ(Mat A,NormType type,PetscReal *norms)
246647f7623dSRémi Lacroix {
246747f7623dSRémi Lacroix   PetscErrorCode ierr;
246847f7623dSRémi Lacroix   Mat_MPIBAIJ    *aij = (Mat_MPIBAIJ*)A->data;
246947f7623dSRémi Lacroix   PetscInt       N,i,*garray = aij->garray;
247047f7623dSRémi Lacroix   PetscInt       ib,jb,bs = A->rmap->bs;
247147f7623dSRémi Lacroix   Mat_SeqBAIJ    *a_aij = (Mat_SeqBAIJ*) aij->A->data;
247247f7623dSRémi Lacroix   MatScalar      *a_val = a_aij->a;
247347f7623dSRémi Lacroix   Mat_SeqBAIJ    *b_aij = (Mat_SeqBAIJ*) aij->B->data;
247447f7623dSRémi Lacroix   MatScalar      *b_val = b_aij->a;
247547f7623dSRémi Lacroix   PetscReal      *work;
247647f7623dSRémi Lacroix 
247747f7623dSRémi Lacroix   PetscFunctionBegin;
247847f7623dSRémi Lacroix   ierr = MatGetSize(A,NULL,&N);CHKERRQ(ierr);
24791795a4d1SJed Brown   ierr = PetscCalloc1(N,&work);CHKERRQ(ierr);
248047f7623dSRémi Lacroix   if (type == NORM_2) {
248147f7623dSRémi Lacroix     for (i=a_aij->i[0]; i<a_aij->i[aij->A->rmap->n/bs]; i++) {
248247f7623dSRémi Lacroix       for (jb=0; jb<bs; jb++) {
248347f7623dSRémi Lacroix         for (ib=0; ib<bs; ib++) {
248447f7623dSRémi Lacroix           work[A->cmap->rstart + a_aij->j[i] * bs + jb] += PetscAbsScalar(*a_val * *a_val);
248547f7623dSRémi Lacroix           a_val++;
248647f7623dSRémi Lacroix         }
248747f7623dSRémi Lacroix       }
248847f7623dSRémi Lacroix     }
248947f7623dSRémi Lacroix     for (i=b_aij->i[0]; i<b_aij->i[aij->B->rmap->n/bs]; i++) {
249047f7623dSRémi Lacroix       for (jb=0; jb<bs; jb++) {
249147f7623dSRémi Lacroix         for (ib=0; ib<bs; ib++) {
249247f7623dSRémi Lacroix           work[garray[b_aij->j[i]] * bs + jb] += PetscAbsScalar(*b_val * *b_val);
249347f7623dSRémi Lacroix           b_val++;
249447f7623dSRémi Lacroix         }
249547f7623dSRémi Lacroix       }
249647f7623dSRémi Lacroix     }
249747f7623dSRémi Lacroix   } else if (type == NORM_1) {
249847f7623dSRémi Lacroix     for (i=a_aij->i[0]; i<a_aij->i[aij->A->rmap->n/bs]; i++) {
249947f7623dSRémi Lacroix       for (jb=0; jb<bs; jb++) {
250047f7623dSRémi Lacroix         for (ib=0; ib<bs; ib++) {
250147f7623dSRémi Lacroix           work[A->cmap->rstart + a_aij->j[i] * bs + jb] += PetscAbsScalar(*a_val);
250247f7623dSRémi Lacroix           a_val++;
250347f7623dSRémi Lacroix         }
250447f7623dSRémi Lacroix       }
250547f7623dSRémi Lacroix     }
250647f7623dSRémi Lacroix     for (i=b_aij->i[0]; i<b_aij->i[aij->B->rmap->n/bs]; i++) {
250747f7623dSRémi Lacroix       for (jb=0; jb<bs; jb++) {
250847f7623dSRémi Lacroix        for (ib=0; ib<bs; ib++) {
250947f7623dSRémi Lacroix           work[garray[b_aij->j[i]] * bs + jb] += PetscAbsScalar(*b_val);
251047f7623dSRémi Lacroix           b_val++;
251147f7623dSRémi Lacroix         }
251247f7623dSRémi Lacroix       }
251347f7623dSRémi Lacroix     }
251447f7623dSRémi Lacroix   } else if (type == NORM_INFINITY) {
251547f7623dSRémi Lacroix     for (i=a_aij->i[0]; i<a_aij->i[aij->A->rmap->n/bs]; i++) {
251647f7623dSRémi Lacroix       for (jb=0; jb<bs; jb++) {
251747f7623dSRémi Lacroix         for (ib=0; ib<bs; ib++) {
251847f7623dSRémi Lacroix           int col = A->cmap->rstart + a_aij->j[i] * bs + jb;
251947f7623dSRémi Lacroix           work[col] = PetscMax(PetscAbsScalar(*a_val), work[col]);
252047f7623dSRémi Lacroix           a_val++;
252147f7623dSRémi Lacroix         }
252247f7623dSRémi Lacroix       }
252347f7623dSRémi Lacroix     }
252447f7623dSRémi Lacroix     for (i=b_aij->i[0]; i<b_aij->i[aij->B->rmap->n/bs]; i++) {
252547f7623dSRémi Lacroix       for (jb=0; jb<bs; jb++) {
252647f7623dSRémi Lacroix         for (ib=0; ib<bs; ib++) {
252747f7623dSRémi Lacroix           int col = garray[b_aij->j[i]] * bs + jb;
252847f7623dSRémi Lacroix           work[col] = PetscMax(PetscAbsScalar(*b_val), work[col]);
252947f7623dSRémi Lacroix           b_val++;
253047f7623dSRémi Lacroix         }
253147f7623dSRémi Lacroix       }
253247f7623dSRémi Lacroix     }
253347f7623dSRémi Lacroix   } else SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ARG_WRONG,"Unknown NormType");
253447f7623dSRémi Lacroix   if (type == NORM_INFINITY) {
253547f7623dSRémi Lacroix     ierr = MPI_Allreduce(work,norms,N,MPIU_REAL,MPIU_MAX,PetscObjectComm((PetscObject)A));CHKERRQ(ierr);
253647f7623dSRémi Lacroix   } else {
253747f7623dSRémi Lacroix     ierr = MPI_Allreduce(work,norms,N,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)A));CHKERRQ(ierr);
253847f7623dSRémi Lacroix   }
253947f7623dSRémi Lacroix   ierr = PetscFree(work);CHKERRQ(ierr);
254047f7623dSRémi Lacroix   if (type == NORM_2) {
254147f7623dSRémi Lacroix     for (i=0; i<N; i++) norms[i] = PetscSqrtReal(norms[i]);
254247f7623dSRémi Lacroix   }
254347f7623dSRémi Lacroix   PetscFunctionReturn(0);
254447f7623dSRémi Lacroix }
254547f7623dSRémi Lacroix 
254647f7623dSRémi Lacroix #undef __FUNCT__
2547bbead8a2SBarry Smith #define __FUNCT__ "MatInvertBlockDiagonal_MPIBAIJ"
2548713ccfa9SJed Brown PetscErrorCode  MatInvertBlockDiagonal_MPIBAIJ(Mat A,const PetscScalar **values)
2549bbead8a2SBarry Smith {
2550bbead8a2SBarry Smith   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*) A->data;
2551bbead8a2SBarry Smith   PetscErrorCode ierr;
2552bbead8a2SBarry Smith 
2553bbead8a2SBarry Smith   PetscFunctionBegin;
2554bbead8a2SBarry Smith   ierr = MatInvertBlockDiagonal(a->A,values);CHKERRQ(ierr);
2555bbead8a2SBarry Smith   PetscFunctionReturn(0);
2556bbead8a2SBarry Smith }
2557bbead8a2SBarry Smith 
25588c7482ecSBarry Smith 
255979bdfe76SSatish Balay /* -------------------------------------------------------------------*/
25603964eb88SJed Brown static struct _MatOps MatOps_Values = {MatSetValues_MPIBAIJ,
2561cc2dc46cSBarry Smith                                        MatGetRow_MPIBAIJ,
2562cc2dc46cSBarry Smith                                        MatRestoreRow_MPIBAIJ,
2563cc2dc46cSBarry Smith                                        MatMult_MPIBAIJ,
256497304618SKris Buschelman                                 /* 4*/ MatMultAdd_MPIBAIJ,
25657c922b88SBarry Smith                                        MatMultTranspose_MPIBAIJ,
25667c922b88SBarry Smith                                        MatMultTransposeAdd_MPIBAIJ,
2567cc2dc46cSBarry Smith                                        0,
2568cc2dc46cSBarry Smith                                        0,
2569cc2dc46cSBarry Smith                                        0,
257097304618SKris Buschelman                                 /*10*/ 0,
2571cc2dc46cSBarry Smith                                        0,
2572cc2dc46cSBarry Smith                                        0,
2573b1a666ecSBarry Smith                                        MatSOR_MPIBAIJ,
2574cc2dc46cSBarry Smith                                        MatTranspose_MPIBAIJ,
257597304618SKris Buschelman                                 /*15*/ MatGetInfo_MPIBAIJ,
25767fc3c18eSBarry Smith                                        MatEqual_MPIBAIJ,
2577cc2dc46cSBarry Smith                                        MatGetDiagonal_MPIBAIJ,
2578cc2dc46cSBarry Smith                                        MatDiagonalScale_MPIBAIJ,
2579cc2dc46cSBarry Smith                                        MatNorm_MPIBAIJ,
258097304618SKris Buschelman                                 /*20*/ MatAssemblyBegin_MPIBAIJ,
2581cc2dc46cSBarry Smith                                        MatAssemblyEnd_MPIBAIJ,
2582cc2dc46cSBarry Smith                                        MatSetOption_MPIBAIJ,
2583cc2dc46cSBarry Smith                                        MatZeroEntries_MPIBAIJ,
2584d519adbfSMatthew Knepley                                 /*24*/ MatZeroRows_MPIBAIJ,
2585cc2dc46cSBarry Smith                                        0,
2586cc2dc46cSBarry Smith                                        0,
2587cc2dc46cSBarry Smith                                        0,
2588cc2dc46cSBarry Smith                                        0,
25894994cf47SJed Brown                                 /*29*/ MatSetUp_MPIBAIJ,
2590273d9f13SBarry Smith                                        0,
2591cc2dc46cSBarry Smith                                        0,
2592cc2dc46cSBarry Smith                                        0,
2593cc2dc46cSBarry Smith                                        0,
2594d519adbfSMatthew Knepley                                 /*34*/ MatDuplicate_MPIBAIJ,
2595cc2dc46cSBarry Smith                                        0,
2596cc2dc46cSBarry Smith                                        0,
2597cc2dc46cSBarry Smith                                        0,
2598cc2dc46cSBarry Smith                                        0,
2599d519adbfSMatthew Knepley                                 /*39*/ MatAXPY_MPIBAIJ,
2600cc2dc46cSBarry Smith                                        MatGetSubMatrices_MPIBAIJ,
2601cc2dc46cSBarry Smith                                        MatIncreaseOverlap_MPIBAIJ,
2602cc2dc46cSBarry Smith                                        MatGetValues_MPIBAIJ,
26033c896bc6SHong Zhang                                        MatCopy_MPIBAIJ,
2604d519adbfSMatthew Knepley                                 /*44*/ 0,
2605cc2dc46cSBarry Smith                                        MatScale_MPIBAIJ,
2606cc2dc46cSBarry Smith                                        0,
2607cc2dc46cSBarry Smith                                        0,
26086f0a72daSMatthew G. Knepley                                        MatZeroRowsColumns_MPIBAIJ,
2609f73d5cc4SBarry Smith                                 /*49*/ 0,
2610cc2dc46cSBarry Smith                                        0,
2611cc2dc46cSBarry Smith                                        0,
2612cc2dc46cSBarry Smith                                        0,
2613cc2dc46cSBarry Smith                                        0,
261493dfae19SHong Zhang                                 /*54*/ MatFDColoringCreate_MPIXAIJ,
2615cc2dc46cSBarry Smith                                        0,
2616cc2dc46cSBarry Smith                                        MatSetUnfactored_MPIBAIJ,
261782094794SBarry Smith                                        MatPermute_MPIBAIJ,
2618cc2dc46cSBarry Smith                                        MatSetValuesBlocked_MPIBAIJ,
2619d519adbfSMatthew Knepley                                 /*59*/ MatGetSubMatrix_MPIBAIJ,
2620f14a1c24SBarry Smith                                        MatDestroy_MPIBAIJ,
2621f14a1c24SBarry Smith                                        MatView_MPIBAIJ,
2622357abbc8SBarry Smith                                        0,
26237843d17aSBarry Smith                                        0,
2624d519adbfSMatthew Knepley                                 /*64*/ 0,
26257843d17aSBarry Smith                                        0,
26267843d17aSBarry Smith                                        0,
26277843d17aSBarry Smith                                        0,
26287843d17aSBarry Smith                                        0,
2629d519adbfSMatthew Knepley                                 /*69*/ MatGetRowMaxAbs_MPIBAIJ,
26307843d17aSBarry Smith                                        0,
263197304618SKris Buschelman                                        0,
263297304618SKris Buschelman                                        0,
263397304618SKris Buschelman                                        0,
2634d519adbfSMatthew Knepley                                 /*74*/ 0,
2635f6d58c54SBarry Smith                                        MatFDColoringApply_BAIJ,
263697304618SKris Buschelman                                        0,
263797304618SKris Buschelman                                        0,
263897304618SKris Buschelman                                        0,
2639d519adbfSMatthew Knepley                                 /*79*/ 0,
264097304618SKris Buschelman                                        0,
264197304618SKris Buschelman                                        0,
264297304618SKris Buschelman                                        0,
26435bba2384SShri Abhyankar                                        MatLoad_MPIBAIJ,
2644d519adbfSMatthew Knepley                                 /*84*/ 0,
2645865e5f61SKris Buschelman                                        0,
2646865e5f61SKris Buschelman                                        0,
2647865e5f61SKris Buschelman                                        0,
2648865e5f61SKris Buschelman                                        0,
2649d519adbfSMatthew Knepley                                 /*89*/ 0,
2650865e5f61SKris Buschelman                                        0,
2651865e5f61SKris Buschelman                                        0,
2652865e5f61SKris Buschelman                                        0,
2653865e5f61SKris Buschelman                                        0,
2654d519adbfSMatthew Knepley                                 /*94*/ 0,
2655865e5f61SKris Buschelman                                        0,
2656865e5f61SKris Buschelman                                        0,
265799cafbc1SBarry Smith                                        0,
265899cafbc1SBarry Smith                                        0,
2659d519adbfSMatthew Knepley                                 /*99*/ 0,
266099cafbc1SBarry Smith                                        0,
266199cafbc1SBarry Smith                                        0,
266299cafbc1SBarry Smith                                        0,
266399cafbc1SBarry Smith                                        0,
2664d519adbfSMatthew Knepley                                 /*104*/0,
266599cafbc1SBarry Smith                                        MatRealPart_MPIBAIJ,
26668c7482ecSBarry Smith                                        MatImaginaryPart_MPIBAIJ,
26678c7482ecSBarry Smith                                        0,
26688c7482ecSBarry Smith                                        0,
2669d519adbfSMatthew Knepley                                 /*109*/0,
26708c7482ecSBarry Smith                                        0,
26718c7482ecSBarry Smith                                        0,
26728c7482ecSBarry Smith                                        0,
26738c7482ecSBarry Smith                                        0,
2674d1adec66SJed Brown                                 /*114*/MatGetSeqNonzeroStructure_MPIBAIJ,
26758c7482ecSBarry Smith                                        0,
26764683f7a4SShri Abhyankar                                        MatGetGhosts_MPIBAIJ,
26774683f7a4SShri Abhyankar                                        0,
26784683f7a4SShri Abhyankar                                        0,
26794683f7a4SShri Abhyankar                                 /*119*/0,
26804683f7a4SShri Abhyankar                                        0,
26814683f7a4SShri Abhyankar                                        0,
2682bbead8a2SBarry Smith                                        0,
2683e8271787SHong Zhang                                        MatGetMultiProcBlock_MPIBAIJ,
2684bbead8a2SBarry Smith                                 /*124*/0,
268547f7623dSRémi Lacroix                                        MatGetColumnNorms_MPIBAIJ,
26863964eb88SJed Brown                                        MatInvertBlockDiagonal_MPIBAIJ,
26873964eb88SJed Brown                                        0,
26883964eb88SJed Brown                                        0,
26893964eb88SJed Brown                                /*129*/ 0,
26903964eb88SJed Brown                                        0,
26913964eb88SJed Brown                                        0,
26923964eb88SJed Brown                                        0,
26933964eb88SJed Brown                                        0,
26943964eb88SJed Brown                                /*134*/ 0,
26953964eb88SJed Brown                                        0,
26963964eb88SJed Brown                                        0,
26973964eb88SJed Brown                                        0,
26983964eb88SJed Brown                                        0,
26993964eb88SJed Brown                                /*139*/ 0,
2700f9426fe0SMark Adams                                        0,
27011919a2e2SJed Brown                                        0,
2702f86b9fbaSHong Zhang                                        MatFDColoringSetUp_MPIXAIJ
27038c7482ecSBarry Smith };
270479bdfe76SSatish Balay 
27054a2ae208SSatish Balay #undef __FUNCT__
27064a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonalBlock_MPIBAIJ"
270711bd1e4dSLisandro Dalcin PetscErrorCode  MatGetDiagonalBlock_MPIBAIJ(Mat A,Mat *a)
27085ef9f2a5SBarry Smith {
27095ef9f2a5SBarry Smith   PetscFunctionBegin;
27105ef9f2a5SBarry Smith   *a = ((Mat_MPIBAIJ*)A->data)->A;
27115ef9f2a5SBarry Smith   PetscFunctionReturn(0);
27125ef9f2a5SBarry Smith }
271379bdfe76SSatish Balay 
27148cc058d9SJed Brown PETSC_EXTERN PetscErrorCode MatConvert_MPIBAIJ_MPISBAIJ(Mat, MatType,MatReuse,Mat*);
2715d94109b8SHong Zhang 
2716aac34f13SBarry Smith #undef __FUNCT__
2717aac34f13SBarry Smith #define __FUNCT__ "MatMPIBAIJSetPreallocationCSR_MPIBAIJ"
2718cf12db73SBarry Smith PetscErrorCode MatMPIBAIJSetPreallocationCSR_MPIBAIJ(Mat B,PetscInt bs,const PetscInt ii[],const PetscInt jj[],const PetscScalar V[])
2719aac34f13SBarry Smith {
2720b8d659d7SLisandro Dalcin   PetscInt       m,rstart,cstart,cend;
2721b8d659d7SLisandro Dalcin   PetscInt       i,j,d,nz,nz_max=0,*d_nnz=0,*o_nnz=0;
2722b8d659d7SLisandro Dalcin   const PetscInt *JJ    =0;
2723b8d659d7SLisandro Dalcin   PetscScalar    *values=0;
2724d47bf9aaSJed Brown   PetscBool      roworiented = ((Mat_MPIBAIJ*)B->data)->roworiented;
2725aac34f13SBarry Smith   PetscErrorCode ierr;
2726aac34f13SBarry Smith 
2727aac34f13SBarry Smith   PetscFunctionBegin;
272826283091SBarry Smith   ierr   = PetscLayoutSetBlockSize(B->rmap,bs);CHKERRQ(ierr);
272926283091SBarry Smith   ierr   = PetscLayoutSetBlockSize(B->cmap,bs);CHKERRQ(ierr);
273026283091SBarry Smith   ierr   = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr);
273126283091SBarry Smith   ierr   = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr);
2732e02043d6SBarry Smith   ierr   = PetscLayoutGetBlockSize(B->rmap,&bs);CHKERRQ(ierr);
2733d0f46423SBarry Smith   m      = B->rmap->n/bs;
2734d0f46423SBarry Smith   rstart = B->rmap->rstart/bs;
2735d0f46423SBarry Smith   cstart = B->cmap->rstart/bs;
2736d0f46423SBarry Smith   cend   = B->cmap->rend/bs;
2737b8d659d7SLisandro Dalcin 
2738e32f2f54SBarry Smith   if (ii[0]) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"ii[0] must be 0 but it is %D",ii[0]);
2739dcca6d9dSJed Brown   ierr = PetscMalloc2(m,&d_nnz,m,&o_nnz);CHKERRQ(ierr);
2740aac34f13SBarry Smith   for (i=0; i<m; i++) {
2741cf12db73SBarry Smith     nz = ii[i+1] - ii[i];
2742e32f2f54SBarry Smith     if (nz < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Local row %D has a negative number of columns %D",i,nz);
2743b8d659d7SLisandro Dalcin     nz_max = PetscMax(nz_max,nz);
2744cf12db73SBarry Smith     JJ     = jj + ii[i];
2745b8d659d7SLisandro Dalcin     for (j=0; j<nz; j++) {
2746aac34f13SBarry Smith       if (*JJ >= cstart) break;
2747aac34f13SBarry Smith       JJ++;
2748aac34f13SBarry Smith     }
2749aac34f13SBarry Smith     d = 0;
2750b8d659d7SLisandro Dalcin     for (; j<nz; j++) {
2751aac34f13SBarry Smith       if (*JJ++ >= cend) break;
2752aac34f13SBarry Smith       d++;
2753aac34f13SBarry Smith     }
2754aac34f13SBarry Smith     d_nnz[i] = d;
2755b8d659d7SLisandro Dalcin     o_nnz[i] = nz - d;
2756aac34f13SBarry Smith   }
2757aac34f13SBarry Smith   ierr = MatMPIBAIJSetPreallocation(B,bs,0,d_nnz,0,o_nnz);CHKERRQ(ierr);
2758fca92195SBarry Smith   ierr = PetscFree2(d_nnz,o_nnz);CHKERRQ(ierr);
2759aac34f13SBarry Smith 
2760b8d659d7SLisandro Dalcin   values = (PetscScalar*)V;
2761b8d659d7SLisandro Dalcin   if (!values) {
2762785e854fSJed Brown     ierr = PetscMalloc1(bs*bs*nz_max,&values);CHKERRQ(ierr);
2763b8d659d7SLisandro Dalcin     ierr = PetscMemzero(values,bs*bs*nz_max*sizeof(PetscScalar));CHKERRQ(ierr);
2764b8d659d7SLisandro Dalcin   }
2765b8d659d7SLisandro Dalcin   for (i=0; i<m; i++) {
2766b8d659d7SLisandro Dalcin     PetscInt          row    = i + rstart;
2767cf12db73SBarry Smith     PetscInt          ncols  = ii[i+1] - ii[i];
2768cf12db73SBarry Smith     const PetscInt    *icols = jj + ii[i];
27693adadaf3SJed Brown     if (!roworiented) {         /* block ordering matches the non-nested layout of MatSetValues so we can insert entire rows */
2770cf12db73SBarry Smith       const PetscScalar *svals = values + (V ? (bs*bs*ii[i]) : 0);
2771b8d659d7SLisandro Dalcin       ierr = MatSetValuesBlocked_MPIBAIJ(B,1,&row,ncols,icols,svals,INSERT_VALUES);CHKERRQ(ierr);
27723adadaf3SJed Brown     } else {                    /* block ordering does not match so we can only insert one block at a time. */
27733adadaf3SJed Brown       PetscInt j;
27743adadaf3SJed Brown       for (j=0; j<ncols; j++) {
27753adadaf3SJed Brown         const PetscScalar *svals = values + (V ? (bs*bs*(ii[i]+j)) : 0);
27763adadaf3SJed Brown         ierr = MatSetValuesBlocked_MPIBAIJ(B,1,&row,1,&icols[j],svals,INSERT_VALUES);CHKERRQ(ierr);
27773adadaf3SJed Brown       }
27783adadaf3SJed Brown     }
2779aac34f13SBarry Smith   }
2780aac34f13SBarry Smith 
2781b8d659d7SLisandro Dalcin   if (!V) { ierr = PetscFree(values);CHKERRQ(ierr); }
2782aac34f13SBarry Smith   ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
2783aac34f13SBarry Smith   ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
27847827cd58SJed Brown   ierr = MatSetOption(B,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_TRUE);CHKERRQ(ierr);
2785aac34f13SBarry Smith   PetscFunctionReturn(0);
2786aac34f13SBarry Smith }
2787aac34f13SBarry Smith 
2788aac34f13SBarry Smith #undef __FUNCT__
2789aac34f13SBarry Smith #define __FUNCT__ "MatMPIBAIJSetPreallocationCSR"
2790aac34f13SBarry Smith /*@C
2791dfb205c3SBarry Smith    MatMPIBAIJSetPreallocationCSR - Allocates memory for a sparse parallel matrix in BAIJ format
2792aac34f13SBarry Smith    (the default parallel PETSc format).
2793aac34f13SBarry Smith 
2794aac34f13SBarry Smith    Collective on MPI_Comm
2795aac34f13SBarry Smith 
2796aac34f13SBarry Smith    Input Parameters:
27971c4f3114SJed Brown +  B - the matrix
2798dfb205c3SBarry Smith .  bs - the block size
2799aac34f13SBarry Smith .  i - the indices into j for the start of each local row (starts with zero)
2800aac34f13SBarry Smith .  j - the column indices for each local row (starts with zero) these must be sorted for each row
2801aac34f13SBarry Smith -  v - optional values in the matrix
2802aac34f13SBarry Smith 
2803aac34f13SBarry Smith    Level: developer
2804aac34f13SBarry Smith 
28053adadaf3SJed Brown    Notes: The order of the entries in values is specified by the MatOption MAT_ROW_ORIENTED.  For example, C programs
28063adadaf3SJed Brown    may want to use the default MAT_ROW_ORIENTED=PETSC_TRUE and use an array v[nnz][bs][bs] where the second index is
28073adadaf3SJed Brown    over rows within a block and the last index is over columns within a block row.  Fortran programs will likely set
28083adadaf3SJed Brown    MAT_ROW_ORIENTED=PETSC_FALSE and use a Fortran array v(bs,bs,nnz) in which the first index is over rows within a
28093adadaf3SJed Brown    block column and the second index is over columns within a block.
28103adadaf3SJed Brown 
2811aac34f13SBarry Smith .keywords: matrix, aij, compressed row, sparse, parallel
2812aac34f13SBarry Smith 
28133adadaf3SJed Brown .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatMPIBAIJSetPreallocation(), MatCreateAIJ(), MPIAIJ, MatCreateMPIBAIJWithArrays(), MPIBAIJ
2814aac34f13SBarry Smith @*/
28157087cfbeSBarry Smith PetscErrorCode  MatMPIBAIJSetPreallocationCSR(Mat B,PetscInt bs,const PetscInt i[],const PetscInt j[], const PetscScalar v[])
2816aac34f13SBarry Smith {
28174ac538c5SBarry Smith   PetscErrorCode ierr;
2818aac34f13SBarry Smith 
2819aac34f13SBarry Smith   PetscFunctionBegin;
28206ba663aaSJed Brown   PetscValidHeaderSpecific(B,MAT_CLASSID,1);
28216ba663aaSJed Brown   PetscValidType(B,1);
28226ba663aaSJed Brown   PetscValidLogicalCollectiveInt(B,bs,2);
28234ac538c5SBarry Smith   ierr = PetscTryMethod(B,"MatMPIBAIJSetPreallocationCSR_C",(Mat,PetscInt,const PetscInt[],const PetscInt[],const PetscScalar[]),(B,bs,i,j,v));CHKERRQ(ierr);
2824aac34f13SBarry Smith   PetscFunctionReturn(0);
2825aac34f13SBarry Smith }
2826aac34f13SBarry Smith 
28274a2ae208SSatish Balay #undef __FUNCT__
2828a23d5eceSKris Buschelman #define __FUNCT__ "MatMPIBAIJSetPreallocation_MPIBAIJ"
2829b2573a8aSBarry Smith PetscErrorCode  MatMPIBAIJSetPreallocation_MPIBAIJ(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt *d_nnz,PetscInt o_nz,const PetscInt *o_nnz)
2830a23d5eceSKris Buschelman {
2831a23d5eceSKris Buschelman   Mat_MPIBAIJ    *b;
2832dfbe8321SBarry Smith   PetscErrorCode ierr;
2833535b19f3SBarry Smith   PetscInt       i;
2834a23d5eceSKris Buschelman 
2835a23d5eceSKris Buschelman   PetscFunctionBegin;
283633d57670SJed Brown   ierr = MatSetBlockSize(B,PetscAbs(bs));CHKERRQ(ierr);
283726283091SBarry Smith   ierr = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr);
283826283091SBarry Smith   ierr = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr);
2839e02043d6SBarry Smith   ierr = PetscLayoutGetBlockSize(B->rmap,&bs);CHKERRQ(ierr);
2840899cda47SBarry Smith 
2841a23d5eceSKris Buschelman   if (d_nnz) {
2842d0f46423SBarry Smith     for (i=0; i<B->rmap->n/bs; i++) {
2843e32f2f54SBarry Smith       if (d_nnz[i] < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"d_nnz cannot be less than -1: local row %D value %D",i,d_nnz[i]);
2844a23d5eceSKris Buschelman     }
2845a23d5eceSKris Buschelman   }
2846a23d5eceSKris Buschelman   if (o_nnz) {
2847d0f46423SBarry Smith     for (i=0; i<B->rmap->n/bs; i++) {
2848e32f2f54SBarry Smith       if (o_nnz[i] < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"o_nnz cannot be less than -1: local row %D value %D",i,o_nnz[i]);
2849a23d5eceSKris Buschelman     }
2850a23d5eceSKris Buschelman   }
2851a23d5eceSKris Buschelman 
2852a23d5eceSKris Buschelman   b      = (Mat_MPIBAIJ*)B->data;
2853a23d5eceSKris Buschelman   b->bs2 = bs*bs;
2854d0f46423SBarry Smith   b->mbs = B->rmap->n/bs;
2855d0f46423SBarry Smith   b->nbs = B->cmap->n/bs;
2856d0f46423SBarry Smith   b->Mbs = B->rmap->N/bs;
2857d0f46423SBarry Smith   b->Nbs = B->cmap->N/bs;
2858a23d5eceSKris Buschelman 
2859a23d5eceSKris Buschelman   for (i=0; i<=b->size; i++) {
2860d0f46423SBarry Smith     b->rangebs[i] = B->rmap->range[i]/bs;
2861a23d5eceSKris Buschelman   }
2862d0f46423SBarry Smith   b->rstartbs = B->rmap->rstart/bs;
2863d0f46423SBarry Smith   b->rendbs   = B->rmap->rend/bs;
2864d0f46423SBarry Smith   b->cstartbs = B->cmap->rstart/bs;
2865d0f46423SBarry Smith   b->cendbs   = B->cmap->rend/bs;
2866a23d5eceSKris Buschelman 
2867526dfc15SBarry Smith   if (!B->preallocated) {
2868f69a0ea3SMatthew Knepley     ierr = MatCreate(PETSC_COMM_SELF,&b->A);CHKERRQ(ierr);
2869d0f46423SBarry Smith     ierr = MatSetSizes(b->A,B->rmap->n,B->cmap->n,B->rmap->n,B->cmap->n);CHKERRQ(ierr);
28709c097c71SKris Buschelman     ierr = MatSetType(b->A,MATSEQBAIJ);CHKERRQ(ierr);
28713bb1ff40SBarry Smith     ierr = PetscLogObjectParent((PetscObject)B,(PetscObject)b->A);CHKERRQ(ierr);
2872f69a0ea3SMatthew Knepley     ierr = MatCreate(PETSC_COMM_SELF,&b->B);CHKERRQ(ierr);
2873d0f46423SBarry Smith     ierr = MatSetSizes(b->B,B->rmap->n,B->cmap->N,B->rmap->n,B->cmap->N);CHKERRQ(ierr);
28749c097c71SKris Buschelman     ierr = MatSetType(b->B,MATSEQBAIJ);CHKERRQ(ierr);
28753bb1ff40SBarry Smith     ierr = PetscLogObjectParent((PetscObject)B,(PetscObject)b->B);CHKERRQ(ierr);
2876ce94432eSBarry Smith     ierr = MatStashCreate_Private(PetscObjectComm((PetscObject)B),bs,&B->bstash);CHKERRQ(ierr);
2877526dfc15SBarry Smith   }
2878a23d5eceSKris Buschelman 
2879526dfc15SBarry Smith   ierr = MatSeqBAIJSetPreallocation(b->A,bs,d_nz,d_nnz);CHKERRQ(ierr);
2880526dfc15SBarry Smith   ierr = MatSeqBAIJSetPreallocation(b->B,bs,o_nz,o_nnz);CHKERRQ(ierr);
2881526dfc15SBarry Smith   B->preallocated = PETSC_TRUE;
2882a23d5eceSKris Buschelman   PetscFunctionReturn(0);
2883a23d5eceSKris Buschelman }
2884a23d5eceSKris Buschelman 
28857087cfbeSBarry Smith extern PetscErrorCode  MatDiagonalScaleLocal_MPIBAIJ(Mat,Vec);
28867087cfbeSBarry Smith extern PetscErrorCode  MatSetHashTableFactor_MPIBAIJ(Mat,PetscReal);
28875bf65638SKris Buschelman 
288882094794SBarry Smith #undef __FUNCT__
288982094794SBarry Smith #define __FUNCT__ "MatConvert_MPIBAIJ_MPIAdj"
28908cc058d9SJed Brown PETSC_EXTERN PetscErrorCode MatConvert_MPIBAIJ_MPIAdj(Mat B, MatType newtype,MatReuse reuse,Mat *adj)
289182094794SBarry Smith {
289282094794SBarry Smith   Mat_MPIBAIJ    *b = (Mat_MPIBAIJ*)B->data;
289382094794SBarry Smith   PetscErrorCode ierr;
289482094794SBarry Smith   Mat_SeqBAIJ    *d  = (Mat_SeqBAIJ*) b->A->data,*o = (Mat_SeqBAIJ*) b->B->data;
289582094794SBarry Smith   PetscInt       M   = B->rmap->n/B->rmap->bs,i,*ii,*jj,cnt,j,k,rstart = B->rmap->rstart/B->rmap->bs;
289682094794SBarry Smith   const PetscInt *id = d->i, *jd = d->j, *io = o->i, *jo = o->j, *garray = b->garray;
289782094794SBarry Smith 
289882094794SBarry Smith   PetscFunctionBegin;
2899785e854fSJed Brown   ierr  = PetscMalloc1((M+1),&ii);CHKERRQ(ierr);
290082094794SBarry Smith   ii[0] = 0;
290182094794SBarry Smith   for (i=0; i<M; i++) {
2902e32f2f54SBarry Smith     if ((id[i+1] - id[i]) < 0) SETERRQ3(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Indices wrong %D %D %D",i,id[i],id[i+1]);
2903e32f2f54SBarry Smith     if ((io[i+1] - io[i]) < 0) SETERRQ3(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Indices wrong %D %D %D",i,io[i],io[i+1]);
290482094794SBarry Smith     ii[i+1] = ii[i] + id[i+1] - id[i] + io[i+1] - io[i];
29055ee9ba1cSJed Brown     /* remove one from count of matrix has diagonal */
29065ee9ba1cSJed Brown     for (j=id[i]; j<id[i+1]; j++) {
29075ee9ba1cSJed Brown       if (jd[j] == i) {ii[i+1]--;break;}
29085ee9ba1cSJed Brown     }
290982094794SBarry Smith   }
2910785e854fSJed Brown   ierr = PetscMalloc1(ii[M],&jj);CHKERRQ(ierr);
291182094794SBarry Smith   cnt  = 0;
291282094794SBarry Smith   for (i=0; i<M; i++) {
291382094794SBarry Smith     for (j=io[i]; j<io[i+1]; j++) {
291482094794SBarry Smith       if (garray[jo[j]] > rstart) break;
291582094794SBarry Smith       jj[cnt++] = garray[jo[j]];
291682094794SBarry Smith     }
291782094794SBarry Smith     for (k=id[i]; k<id[i+1]; k++) {
29185ee9ba1cSJed Brown       if (jd[k] != i) {
291982094794SBarry Smith         jj[cnt++] = rstart + jd[k];
292082094794SBarry Smith       }
29215ee9ba1cSJed Brown     }
292282094794SBarry Smith     for (; j<io[i+1]; j++) {
292382094794SBarry Smith       jj[cnt++] = garray[jo[j]];
292482094794SBarry Smith     }
292582094794SBarry Smith   }
2926ce94432eSBarry Smith   ierr = MatCreateMPIAdj(PetscObjectComm((PetscObject)B),M,B->cmap->N/B->rmap->bs,ii,jj,NULL,adj);CHKERRQ(ierr);
292782094794SBarry Smith   PetscFunctionReturn(0);
292882094794SBarry Smith }
292982094794SBarry Smith 
2930c6db04a5SJed Brown #include <../src/mat/impls/aij/mpi/mpiaij.h>
293162471d69SBarry Smith 
29328cc058d9SJed Brown PETSC_EXTERN PetscErrorCode MatConvert_SeqBAIJ_SeqAIJ(Mat,MatType,MatReuse,Mat*);
2933b2573a8aSBarry Smith 
293462471d69SBarry Smith #undef __FUNCT__
293562471d69SBarry Smith #define __FUNCT__ "MatConvert_MPIBAIJ_MPIAIJ"
29368cc058d9SJed Brown PETSC_EXTERN PetscErrorCode MatConvert_MPIBAIJ_MPIAIJ(Mat A,MatType newtype,MatReuse reuse,Mat *newmat)
293762471d69SBarry Smith {
293862471d69SBarry Smith   PetscErrorCode ierr;
293962471d69SBarry Smith   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)A->data;
294062471d69SBarry Smith   Mat            B;
294185a69837SSatish Balay   Mat_MPIAIJ     *b;
294262471d69SBarry Smith 
294362471d69SBarry Smith   PetscFunctionBegin;
2944ce94432eSBarry Smith   if (!A->assembled) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_SUP,"Matrix must be assembled");
294562471d69SBarry Smith 
2946ce94432eSBarry Smith   ierr = MatCreate(PetscObjectComm((PetscObject)A),&B);CHKERRQ(ierr);
294762471d69SBarry Smith   ierr = MatSetSizes(B,A->rmap->n,A->cmap->n,A->rmap->N,A->cmap->N);CHKERRQ(ierr);
29486d0a4a0eSHong Zhang   ierr = MatSetType(B,MATMPIAIJ);CHKERRQ(ierr);
29490298fd71SBarry Smith   ierr = MatSeqAIJSetPreallocation(B,0,NULL);CHKERRQ(ierr);
29500298fd71SBarry Smith   ierr = MatMPIAIJSetPreallocation(B,0,NULL,0,NULL);CHKERRQ(ierr);
295162471d69SBarry Smith   b    = (Mat_MPIAIJ*) B->data;
295262471d69SBarry Smith 
29536bf464f9SBarry Smith   ierr = MatDestroy(&b->A);CHKERRQ(ierr);
29546bf464f9SBarry Smith   ierr = MatDestroy(&b->B);CHKERRQ(ierr);
2955ab9863d7SBarry Smith   ierr = MatDisAssemble_MPIBAIJ(A);CHKERRQ(ierr);
295662471d69SBarry Smith   ierr = MatConvert_SeqBAIJ_SeqAIJ(a->A, MATSEQAIJ, MAT_INITIAL_MATRIX, &b->A);CHKERRQ(ierr);
295762471d69SBarry Smith   ierr = MatConvert_SeqBAIJ_SeqAIJ(a->B, MATSEQAIJ, MAT_INITIAL_MATRIX, &b->B);CHKERRQ(ierr);
295862471d69SBarry Smith   ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
295962471d69SBarry Smith   ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
29606a719282SBarry Smith   ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
29616a719282SBarry Smith   ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
296262471d69SBarry Smith   if (reuse == MAT_REUSE_MATRIX) {
296362471d69SBarry Smith     ierr = MatHeaderReplace(A,B);CHKERRQ(ierr);
296462471d69SBarry Smith   } else {
296562471d69SBarry Smith    *newmat = B;
296662471d69SBarry Smith   }
296762471d69SBarry Smith   PetscFunctionReturn(0);
296862471d69SBarry Smith }
296962471d69SBarry Smith 
2970450b117fSShri Abhyankar #if defined(PETSC_HAVE_MUMPS)
29718cc058d9SJed Brown PETSC_EXTERN PetscErrorCode MatGetFactor_baij_mumps(Mat,MatFactorType,Mat*);
2972450b117fSShri Abhyankar #endif
2973450b117fSShri Abhyankar 
29740bad9183SKris Buschelman /*MC
2975fafad747SKris Buschelman    MATMPIBAIJ - MATMPIBAIJ = "mpibaij" - A matrix type to be used for distributed block sparse matrices.
29760bad9183SKris Buschelman 
29770bad9183SKris Buschelman    Options Database Keys:
29788c07d4e3SBarry Smith + -mat_type mpibaij - sets the matrix type to "mpibaij" during a call to MatSetFromOptions()
29798c07d4e3SBarry Smith . -mat_block_size <bs> - set the blocksize used to store the matrix
29808c07d4e3SBarry Smith - -mat_use_hash_table <fact>
29810bad9183SKris Buschelman 
29820bad9183SKris Buschelman   Level: beginner
29830bad9183SKris Buschelman 
29840bad9183SKris Buschelman .seealso: MatCreateMPIBAIJ
29850bad9183SKris Buschelman M*/
29860bad9183SKris Buschelman 
29878cc058d9SJed Brown PETSC_EXTERN PetscErrorCode MatConvert_MPIBAIJ_MPIBSTRM(Mat,MatType,MatReuse,Mat*);
2988c0cdd4a1SDahai Guo 
2989a23d5eceSKris Buschelman #undef __FUNCT__
29904a2ae208SSatish Balay #define __FUNCT__ "MatCreate_MPIBAIJ"
29918cc058d9SJed Brown PETSC_EXTERN PetscErrorCode MatCreate_MPIBAIJ(Mat B)
2992273d9f13SBarry Smith {
2993273d9f13SBarry Smith   Mat_MPIBAIJ    *b;
2994dfbe8321SBarry Smith   PetscErrorCode ierr;
2995ace3abfcSBarry Smith   PetscBool      flg;
2996273d9f13SBarry Smith 
2997273d9f13SBarry Smith   PetscFunctionBegin;
2998b00a9115SJed Brown   ierr    = PetscNewLog(B,&b);CHKERRQ(ierr);
299982502324SSatish Balay   B->data = (void*)b;
300082502324SSatish Balay 
3001273d9f13SBarry Smith   ierr         = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr);
3002273d9f13SBarry Smith   B->assembled = PETSC_FALSE;
3003273d9f13SBarry Smith 
3004273d9f13SBarry Smith   B->insertmode = NOT_SET_VALUES;
3005ce94432eSBarry Smith   ierr          = MPI_Comm_rank(PetscObjectComm((PetscObject)B),&b->rank);CHKERRQ(ierr);
3006ce94432eSBarry Smith   ierr          = MPI_Comm_size(PetscObjectComm((PetscObject)B),&b->size);CHKERRQ(ierr);
3007273d9f13SBarry Smith 
3008273d9f13SBarry Smith   /* build local table of row and column ownerships */
3009785e854fSJed Brown   ierr = PetscMalloc1((b->size+1),&b->rangebs);CHKERRQ(ierr);
3010273d9f13SBarry Smith 
3011273d9f13SBarry Smith   /* build cache for off array entries formed */
3012ce94432eSBarry Smith   ierr = MatStashCreate_Private(PetscObjectComm((PetscObject)B),1,&B->stash);CHKERRQ(ierr);
301326fbe8dcSKarl Rupp 
3014273d9f13SBarry Smith   b->donotstash  = PETSC_FALSE;
30150298fd71SBarry Smith   b->colmap      = NULL;
30160298fd71SBarry Smith   b->garray      = NULL;
3017273d9f13SBarry Smith   b->roworiented = PETSC_TRUE;
3018273d9f13SBarry Smith 
3019273d9f13SBarry Smith   /* stuff used in block assembly */
3020273d9f13SBarry Smith   b->barray = 0;
3021273d9f13SBarry Smith 
3022273d9f13SBarry Smith   /* stuff used for matrix vector multiply */
3023273d9f13SBarry Smith   b->lvec  = 0;
3024273d9f13SBarry Smith   b->Mvctx = 0;
3025273d9f13SBarry Smith 
3026273d9f13SBarry Smith   /* stuff for MatGetRow() */
3027273d9f13SBarry Smith   b->rowindices   = 0;
3028273d9f13SBarry Smith   b->rowvalues    = 0;
3029273d9f13SBarry Smith   b->getrowactive = PETSC_FALSE;
3030273d9f13SBarry Smith 
3031273d9f13SBarry Smith   /* hash table stuff */
3032273d9f13SBarry Smith   b->ht           = 0;
3033273d9f13SBarry Smith   b->hd           = 0;
3034273d9f13SBarry Smith   b->ht_size      = 0;
3035273d9f13SBarry Smith   b->ht_flag      = PETSC_FALSE;
3036273d9f13SBarry Smith   b->ht_fact      = 0;
3037273d9f13SBarry Smith   b->ht_total_ct  = 0;
3038273d9f13SBarry Smith   b->ht_insert_ct = 0;
3039273d9f13SBarry Smith 
30407a868f3eSHong Zhang   /* stuff for MatGetSubMatrices_MPIBAIJ_local() */
30417a868f3eSHong Zhang   b->ijonly = PETSC_FALSE;
30427a868f3eSHong Zhang 
3043ce94432eSBarry Smith   ierr = PetscOptionsBegin(PetscObjectComm((PetscObject)B),NULL,"Options for loading MPIBAIJ matrix 1","Mat");CHKERRQ(ierr);
30440298fd71SBarry Smith   ierr = PetscOptionsBool("-mat_use_hash_table","Use hash table to save memory in constructing matrix","MatSetOption",PETSC_FALSE,&flg,NULL);CHKERRQ(ierr);
3045273d9f13SBarry Smith   if (flg) {
3046f6275e2eSBarry Smith     PetscReal fact = 1.39;
30474e0d8c25SBarry Smith     ierr = MatSetOption(B,MAT_USE_HASH_TABLE,PETSC_TRUE);CHKERRQ(ierr);
30480298fd71SBarry Smith     ierr = PetscOptionsReal("-mat_use_hash_table","Use hash table factor","MatMPIBAIJSetHashTableFactor",fact,&fact,NULL);CHKERRQ(ierr);
3049273d9f13SBarry Smith     if (fact <= 1.0) fact = 1.39;
3050273d9f13SBarry Smith     ierr = MatMPIBAIJSetHashTableFactor(B,fact);CHKERRQ(ierr);
30511e2582c4SBarry Smith     ierr = PetscInfo1(B,"Hash table Factor used %5.2f\n",fact);CHKERRQ(ierr);
3052273d9f13SBarry Smith   }
30538c07d4e3SBarry Smith   ierr = PetscOptionsEnd();CHKERRQ(ierr);
30548c07d4e3SBarry Smith 
3055450b117fSShri Abhyankar #if defined(PETSC_HAVE_MUMPS)
3056bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatGetFactor_mumps_C",MatGetFactor_baij_mumps);CHKERRQ(ierr);
3057450b117fSShri Abhyankar #endif
3058bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpibaij_mpiadj_C",MatConvert_MPIBAIJ_MPIAdj);CHKERRQ(ierr);
3059bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpibaij_mpiaij_C",MatConvert_MPIBAIJ_MPIAIJ);CHKERRQ(ierr);
3060bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpibaij_mpisbaij_C",MatConvert_MPIBAIJ_MPISBAIJ);CHKERRQ(ierr);
3061bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatStoreValues_C",MatStoreValues_MPIBAIJ);CHKERRQ(ierr);
3062bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatRetrieveValues_C",MatRetrieveValues_MPIBAIJ);CHKERRQ(ierr);
3063bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatGetDiagonalBlock_C",MatGetDiagonalBlock_MPIBAIJ);CHKERRQ(ierr);
3064bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatMPIBAIJSetPreallocation_C",MatMPIBAIJSetPreallocation_MPIBAIJ);CHKERRQ(ierr);
3065bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatMPIBAIJSetPreallocationCSR_C",MatMPIBAIJSetPreallocationCSR_MPIBAIJ);CHKERRQ(ierr);
3066bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatDiagonalScaleLocal_C",MatDiagonalScaleLocal_MPIBAIJ);CHKERRQ(ierr);
3067bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatSetHashTableFactor_C",MatSetHashTableFactor_MPIBAIJ);CHKERRQ(ierr);
3068bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpibaij_mpibstrm_C",MatConvert_MPIBAIJ_MPIBSTRM);CHKERRQ(ierr);
306917667f90SBarry Smith   ierr = PetscObjectChangeTypeName((PetscObject)B,MATMPIBAIJ);CHKERRQ(ierr);
3070273d9f13SBarry Smith   PetscFunctionReturn(0);
3071273d9f13SBarry Smith }
3072273d9f13SBarry Smith 
3073209238afSKris Buschelman /*MC
3074002d173eSKris Buschelman    MATBAIJ - MATBAIJ = "baij" - A matrix type to be used for block sparse matrices.
3075209238afSKris Buschelman 
3076209238afSKris Buschelman    This matrix type is identical to MATSEQBAIJ when constructed with a single process communicator,
3077209238afSKris Buschelman    and MATMPIBAIJ otherwise.
3078209238afSKris Buschelman 
3079209238afSKris Buschelman    Options Database Keys:
3080209238afSKris Buschelman . -mat_type baij - sets the matrix type to "baij" during a call to MatSetFromOptions()
3081209238afSKris Buschelman 
3082209238afSKris Buschelman   Level: beginner
3083209238afSKris Buschelman 
308469b1f4b7SBarry Smith .seealso: MatCreateBAIJ(),MATSEQBAIJ,MATMPIBAIJ, MatMPIBAIJSetPreallocation(), MatMPIBAIJSetPreallocationCSR()
3085209238afSKris Buschelman M*/
3086209238afSKris Buschelman 
30874a2ae208SSatish Balay #undef __FUNCT__
30884a2ae208SSatish Balay #define __FUNCT__ "MatMPIBAIJSetPreallocation"
3089273d9f13SBarry Smith /*@C
3090aac34f13SBarry Smith    MatMPIBAIJSetPreallocation - Allocates memory for a sparse parallel matrix in block AIJ format
3091273d9f13SBarry Smith    (block compressed row).  For good matrix assembly performance
3092273d9f13SBarry Smith    the user should preallocate the matrix storage by setting the parameters
3093273d9f13SBarry Smith    d_nz (or d_nnz) and o_nz (or o_nnz).  By setting these parameters accurately,
3094273d9f13SBarry Smith    performance can be increased by more than a factor of 50.
3095273d9f13SBarry Smith 
3096273d9f13SBarry Smith    Collective on Mat
3097273d9f13SBarry Smith 
3098273d9f13SBarry Smith    Input Parameters:
30991c4f3114SJed Brown +  B - the matrix
3100e8271787SHong Zhang .  bs   - size of block
3101273d9f13SBarry Smith .  d_nz  - number of block nonzeros per block row in diagonal portion of local
3102273d9f13SBarry Smith            submatrix  (same for all local rows)
3103273d9f13SBarry Smith .  d_nnz - array containing the number of block nonzeros in the various block rows
3104273d9f13SBarry Smith            of the in diagonal portion of the local (possibly different for each block
31050298fd71SBarry Smith            row) or NULL.  If you plan to factor the matrix you must leave room for the diagonal entry and
310695742e49SBarry Smith            set it even if it is zero.
3107273d9f13SBarry Smith .  o_nz  - number of block nonzeros per block row in the off-diagonal portion of local
3108273d9f13SBarry Smith            submatrix (same for all local rows).
3109273d9f13SBarry Smith -  o_nnz - array containing the number of nonzeros in the various block rows of the
3110273d9f13SBarry Smith            off-diagonal portion of the local submatrix (possibly different for
31110298fd71SBarry Smith            each block row) or NULL.
3112273d9f13SBarry Smith 
311349a6f317SBarry Smith    If the *_nnz parameter is given then the *_nz parameter is ignored
3114273d9f13SBarry Smith 
3115273d9f13SBarry Smith    Options Database Keys:
31168c07d4e3SBarry Smith +   -mat_block_size - size of the blocks to use
31178c07d4e3SBarry Smith -   -mat_use_hash_table <fact>
3118273d9f13SBarry Smith 
3119273d9f13SBarry Smith    Notes:
3120273d9f13SBarry Smith    If PETSC_DECIDE or  PETSC_DETERMINE is used for a particular argument on one processor
3121273d9f13SBarry Smith    than it must be used on all processors that share the object for that argument.
3122273d9f13SBarry Smith 
3123273d9f13SBarry Smith    Storage Information:
3124273d9f13SBarry Smith    For a square global matrix we define each processor's diagonal portion
3125273d9f13SBarry Smith    to be its local rows and the corresponding columns (a square submatrix);
3126273d9f13SBarry Smith    each processor's off-diagonal portion encompasses the remainder of the
3127273d9f13SBarry Smith    local matrix (a rectangular submatrix).
3128273d9f13SBarry Smith 
3129273d9f13SBarry Smith    The user can specify preallocated storage for the diagonal part of
3130273d9f13SBarry Smith    the local submatrix with either d_nz or d_nnz (not both).  Set
31310298fd71SBarry Smith    d_nz=PETSC_DEFAULT and d_nnz=NULL for PETSc to control dynamic
3132273d9f13SBarry Smith    memory allocation.  Likewise, specify preallocated storage for the
3133273d9f13SBarry Smith    off-diagonal part of the local submatrix with o_nz or o_nnz (not both).
3134273d9f13SBarry Smith 
3135273d9f13SBarry Smith    Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
3136273d9f13SBarry Smith    the figure below we depict these three local rows and all columns (0-11).
3137273d9f13SBarry Smith 
3138273d9f13SBarry Smith .vb
3139273d9f13SBarry Smith            0 1 2 3 4 5 6 7 8 9 10 11
3140a4b1a0f6SJed Brown           --------------------------
3141273d9f13SBarry Smith    row 3  |o o o d d d o o o o  o  o
3142273d9f13SBarry Smith    row 4  |o o o d d d o o o o  o  o
3143273d9f13SBarry Smith    row 5  |o o o d d d o o o o  o  o
3144a4b1a0f6SJed Brown           --------------------------
3145273d9f13SBarry Smith .ve
3146273d9f13SBarry Smith 
3147273d9f13SBarry Smith    Thus, any entries in the d locations are stored in the d (diagonal)
3148273d9f13SBarry Smith    submatrix, and any entries in the o locations are stored in the
3149273d9f13SBarry Smith    o (off-diagonal) submatrix.  Note that the d and the o submatrices are
3150273d9f13SBarry Smith    stored simply in the MATSEQBAIJ format for compressed row storage.
3151273d9f13SBarry Smith 
3152273d9f13SBarry Smith    Now d_nz should indicate the number of block nonzeros per row in the d matrix,
3153273d9f13SBarry Smith    and o_nz should indicate the number of block nonzeros per row in the o matrix.
3154273d9f13SBarry Smith    In general, for PDE problems in which most nonzeros are near the diagonal,
3155273d9f13SBarry Smith    one expects d_nz >> o_nz.   For large problems you MUST preallocate memory
3156273d9f13SBarry Smith    or you will get TERRIBLE performance; see the users' manual chapter on
3157273d9f13SBarry Smith    matrices.
3158273d9f13SBarry Smith 
3159aa95bbe8SBarry Smith    You can call MatGetInfo() to get information on how effective the preallocation was;
3160aa95bbe8SBarry Smith    for example the fields mallocs,nz_allocated,nz_used,nz_unneeded;
3161aa95bbe8SBarry Smith    You can also run with the option -info and look for messages with the string
3162aa95bbe8SBarry Smith    malloc in them to see if additional memory allocation was needed.
3163aa95bbe8SBarry Smith 
3164273d9f13SBarry Smith    Level: intermediate
3165273d9f13SBarry Smith 
3166273d9f13SBarry Smith .keywords: matrix, block, aij, compressed row, sparse, parallel
3167273d9f13SBarry Smith 
3168ab978733SBarry Smith .seealso: MatCreate(), MatCreateSeqBAIJ(), MatSetValues(), MatCreateBAIJ(), MatMPIBAIJSetPreallocationCSR(), PetscSplitOwnership()
3169273d9f13SBarry Smith @*/
31707087cfbeSBarry Smith PetscErrorCode  MatMPIBAIJSetPreallocation(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[])
3171273d9f13SBarry Smith {
31724ac538c5SBarry Smith   PetscErrorCode ierr;
3173273d9f13SBarry Smith 
3174273d9f13SBarry Smith   PetscFunctionBegin;
31756ba663aaSJed Brown   PetscValidHeaderSpecific(B,MAT_CLASSID,1);
31766ba663aaSJed Brown   PetscValidType(B,1);
31776ba663aaSJed Brown   PetscValidLogicalCollectiveInt(B,bs,2);
31784ac538c5SBarry Smith   ierr = PetscTryMethod(B,"MatMPIBAIJSetPreallocation_C",(Mat,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[]),(B,bs,d_nz,d_nnz,o_nz,o_nnz));CHKERRQ(ierr);
3179273d9f13SBarry Smith   PetscFunctionReturn(0);
3180273d9f13SBarry Smith }
3181273d9f13SBarry Smith 
31824a2ae208SSatish Balay #undef __FUNCT__
318369b1f4b7SBarry Smith #define __FUNCT__ "MatCreateBAIJ"
318479bdfe76SSatish Balay /*@C
318569b1f4b7SBarry Smith    MatCreateBAIJ - Creates a sparse parallel matrix in block AIJ format
318679bdfe76SSatish Balay    (block compressed row).  For good matrix assembly performance
318779bdfe76SSatish Balay    the user should preallocate the matrix storage by setting the parameters
318879bdfe76SSatish Balay    d_nz (or d_nnz) and o_nz (or o_nnz).  By setting these parameters accurately,
318979bdfe76SSatish Balay    performance can be increased by more than a factor of 50.
319079bdfe76SSatish Balay 
3191db81eaa0SLois Curfman McInnes    Collective on MPI_Comm
3192db81eaa0SLois Curfman McInnes 
319379bdfe76SSatish Balay    Input Parameters:
3194db81eaa0SLois Curfman McInnes +  comm - MPI communicator
319579bdfe76SSatish Balay .  bs   - size of blockk
319679bdfe76SSatish Balay .  m - number of local rows (or PETSC_DECIDE to have calculated if M is given)
319792e8d321SLois Curfman McInnes            This value should be the same as the local size used in creating the
319892e8d321SLois Curfman McInnes            y vector for the matrix-vector product y = Ax.
319992e8d321SLois Curfman McInnes .  n - number of local columns (or PETSC_DECIDE to have calculated if N is given)
320092e8d321SLois Curfman McInnes            This value should be the same as the local size used in creating the
320192e8d321SLois Curfman McInnes            x vector for the matrix-vector product y = Ax.
3202be79a94dSBarry Smith .  M - number of global rows (or PETSC_DETERMINE to have calculated if m is given)
3203be79a94dSBarry Smith .  N - number of global columns (or PETSC_DETERMINE to have calculated if n is given)
320447a75d0bSBarry Smith .  d_nz  - number of nonzero blocks per block row in diagonal portion of local
320579bdfe76SSatish Balay            submatrix  (same for all local rows)
320647a75d0bSBarry Smith .  d_nnz - array containing the number of nonzero blocks in the various block rows
320792e8d321SLois Curfman McInnes            of the in diagonal portion of the local (possibly different for each block
32080298fd71SBarry Smith            row) or NULL.  If you plan to factor the matrix you must leave room for the diagonal entry
320995742e49SBarry Smith            and set it even if it is zero.
321047a75d0bSBarry Smith .  o_nz  - number of nonzero blocks per block row in the off-diagonal portion of local
321179bdfe76SSatish Balay            submatrix (same for all local rows).
321247a75d0bSBarry Smith -  o_nnz - array containing the number of nonzero blocks in the various block rows of the
321392e8d321SLois Curfman McInnes            off-diagonal portion of the local submatrix (possibly different for
32140298fd71SBarry Smith            each block row) or NULL.
321579bdfe76SSatish Balay 
321679bdfe76SSatish Balay    Output Parameter:
321779bdfe76SSatish Balay .  A - the matrix
321879bdfe76SSatish Balay 
3219db81eaa0SLois Curfman McInnes    Options Database Keys:
32208c07d4e3SBarry Smith +   -mat_block_size - size of the blocks to use
32218c07d4e3SBarry Smith -   -mat_use_hash_table <fact>
32223ffaccefSLois Curfman McInnes 
3223175b88e8SBarry Smith    It is recommended that one use the MatCreate(), MatSetType() and/or MatSetFromOptions(),
3224ae1d86c5SBarry Smith    MatXXXXSetPreallocation() paradgm instead of this routine directly.
3225175b88e8SBarry Smith    [MatXXXXSetPreallocation() is, for example, MatSeqAIJSetPreallocation]
3226175b88e8SBarry Smith 
3227b259b22eSLois Curfman McInnes    Notes:
322849a6f317SBarry Smith    If the *_nnz parameter is given then the *_nz parameter is ignored
322949a6f317SBarry Smith 
323047a75d0bSBarry Smith    A nonzero block is any block that as 1 or more nonzeros in it
323147a75d0bSBarry Smith 
323279bdfe76SSatish Balay    The user MUST specify either the local or global matrix dimensions
323379bdfe76SSatish Balay    (possibly both).
323479bdfe76SSatish Balay 
3235be79a94dSBarry Smith    If PETSC_DECIDE or  PETSC_DETERMINE is used for a particular argument on one processor
3236be79a94dSBarry Smith    than it must be used on all processors that share the object for that argument.
3237be79a94dSBarry Smith 
323879bdfe76SSatish Balay    Storage Information:
323979bdfe76SSatish Balay    For a square global matrix we define each processor's diagonal portion
324079bdfe76SSatish Balay    to be its local rows and the corresponding columns (a square submatrix);
324179bdfe76SSatish Balay    each processor's off-diagonal portion encompasses the remainder of the
324279bdfe76SSatish Balay    local matrix (a rectangular submatrix).
324379bdfe76SSatish Balay 
324479bdfe76SSatish Balay    The user can specify preallocated storage for the diagonal part of
324579bdfe76SSatish Balay    the local submatrix with either d_nz or d_nnz (not both).  Set
32460298fd71SBarry Smith    d_nz=PETSC_DEFAULT and d_nnz=NULL for PETSc to control dynamic
324779bdfe76SSatish Balay    memory allocation.  Likewise, specify preallocated storage for the
324879bdfe76SSatish Balay    off-diagonal part of the local submatrix with o_nz or o_nnz (not both).
324979bdfe76SSatish Balay 
325079bdfe76SSatish Balay    Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
325179bdfe76SSatish Balay    the figure below we depict these three local rows and all columns (0-11).
325279bdfe76SSatish Balay 
3253db81eaa0SLois Curfman McInnes .vb
3254db81eaa0SLois Curfman McInnes            0 1 2 3 4 5 6 7 8 9 10 11
3255a4b1a0f6SJed Brown           --------------------------
3256db81eaa0SLois Curfman McInnes    row 3  |o o o d d d o o o o  o  o
3257db81eaa0SLois Curfman McInnes    row 4  |o o o d d d o o o o  o  o
3258db81eaa0SLois Curfman McInnes    row 5  |o o o d d d o o o o  o  o
3259a4b1a0f6SJed Brown           --------------------------
3260db81eaa0SLois Curfman McInnes .ve
326179bdfe76SSatish Balay 
326279bdfe76SSatish Balay    Thus, any entries in the d locations are stored in the d (diagonal)
326379bdfe76SSatish Balay    submatrix, and any entries in the o locations are stored in the
326479bdfe76SSatish Balay    o (off-diagonal) submatrix.  Note that the d and the o submatrices are
326557b952d6SSatish Balay    stored simply in the MATSEQBAIJ format for compressed row storage.
326679bdfe76SSatish Balay 
3267d64ed03dSBarry Smith    Now d_nz should indicate the number of block nonzeros per row in the d matrix,
3268d64ed03dSBarry Smith    and o_nz should indicate the number of block nonzeros per row in the o matrix.
326979bdfe76SSatish Balay    In general, for PDE problems in which most nonzeros are near the diagonal,
327092e8d321SLois Curfman McInnes    one expects d_nz >> o_nz.   For large problems you MUST preallocate memory
327192e8d321SLois Curfman McInnes    or you will get TERRIBLE performance; see the users' manual chapter on
32726da5968aSLois Curfman McInnes    matrices.
327379bdfe76SSatish Balay 
3274027ccd11SLois Curfman McInnes    Level: intermediate
3275027ccd11SLois Curfman McInnes 
327692e8d321SLois Curfman McInnes .keywords: matrix, block, aij, compressed row, sparse, parallel
327779bdfe76SSatish Balay 
327869b1f4b7SBarry Smith .seealso: MatCreate(), MatCreateSeqBAIJ(), MatSetValues(), MatCreateBAIJ(), MatMPIBAIJSetPreallocation(), MatMPIBAIJSetPreallocationCSR()
327979bdfe76SSatish Balay @*/
328069b1f4b7SBarry Smith PetscErrorCode  MatCreateBAIJ(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[],Mat *A)
328179bdfe76SSatish Balay {
32826849ba73SBarry Smith   PetscErrorCode ierr;
3283b24ad042SBarry Smith   PetscMPIInt    size;
328479bdfe76SSatish Balay 
3285d64ed03dSBarry Smith   PetscFunctionBegin;
3286f69a0ea3SMatthew Knepley   ierr = MatCreate(comm,A);CHKERRQ(ierr);
3287f69a0ea3SMatthew Knepley   ierr = MatSetSizes(*A,m,n,M,N);CHKERRQ(ierr);
3288d132466eSBarry Smith   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
3289273d9f13SBarry Smith   if (size > 1) {
3290273d9f13SBarry Smith     ierr = MatSetType(*A,MATMPIBAIJ);CHKERRQ(ierr);
3291273d9f13SBarry Smith     ierr = MatMPIBAIJSetPreallocation(*A,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr);
3292273d9f13SBarry Smith   } else {
3293273d9f13SBarry Smith     ierr = MatSetType(*A,MATSEQBAIJ);CHKERRQ(ierr);
3294273d9f13SBarry Smith     ierr = MatSeqBAIJSetPreallocation(*A,bs,d_nz,d_nnz);CHKERRQ(ierr);
32953914022bSBarry Smith   }
32963a40ed3dSBarry Smith   PetscFunctionReturn(0);
329779bdfe76SSatish Balay }
3298026e39d0SSatish Balay 
32994a2ae208SSatish Balay #undef __FUNCT__
33004a2ae208SSatish Balay #define __FUNCT__ "MatDuplicate_MPIBAIJ"
33016849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIBAIJ(Mat matin,MatDuplicateOption cpvalues,Mat *newmat)
33020ac07820SSatish Balay {
33030ac07820SSatish Balay   Mat            mat;
33040ac07820SSatish Balay   Mat_MPIBAIJ    *a,*oldmat = (Mat_MPIBAIJ*)matin->data;
3305dfbe8321SBarry Smith   PetscErrorCode ierr;
3306b24ad042SBarry Smith   PetscInt       len=0;
33070ac07820SSatish Balay 
3308d64ed03dSBarry Smith   PetscFunctionBegin;
33090ac07820SSatish Balay   *newmat = 0;
3310ce94432eSBarry Smith   ierr    = MatCreate(PetscObjectComm((PetscObject)matin),&mat);CHKERRQ(ierr);
3311d0f46423SBarry Smith   ierr    = MatSetSizes(mat,matin->rmap->n,matin->cmap->n,matin->rmap->N,matin->cmap->N);CHKERRQ(ierr);
33127adad957SLisandro Dalcin   ierr    = MatSetType(mat,((PetscObject)matin)->type_name);CHKERRQ(ierr);
33131d5dac46SHong Zhang   ierr    = PetscMemcpy(mat->ops,matin->ops,sizeof(struct _MatOps));CHKERRQ(ierr);
33147fff6886SHong Zhang 
3315d5f3da31SBarry Smith   mat->factortype   = matin->factortype;
3316273d9f13SBarry Smith   mat->preallocated = PETSC_TRUE;
33170ac07820SSatish Balay   mat->assembled    = PETSC_TRUE;
33187fff6886SHong Zhang   mat->insertmode   = NOT_SET_VALUES;
33197fff6886SHong Zhang 
3320273d9f13SBarry Smith   a             = (Mat_MPIBAIJ*)mat->data;
3321d0f46423SBarry Smith   mat->rmap->bs = matin->rmap->bs;
33220ac07820SSatish Balay   a->bs2        = oldmat->bs2;
33230ac07820SSatish Balay   a->mbs        = oldmat->mbs;
33240ac07820SSatish Balay   a->nbs        = oldmat->nbs;
33250ac07820SSatish Balay   a->Mbs        = oldmat->Mbs;
33260ac07820SSatish Balay   a->Nbs        = oldmat->Nbs;
33270ac07820SSatish Balay 
33281e1e43feSBarry Smith   ierr = PetscLayoutReference(matin->rmap,&mat->rmap);CHKERRQ(ierr);
33291e1e43feSBarry Smith   ierr = PetscLayoutReference(matin->cmap,&mat->cmap);CHKERRQ(ierr);
3330899cda47SBarry Smith 
33310ac07820SSatish Balay   a->size         = oldmat->size;
33320ac07820SSatish Balay   a->rank         = oldmat->rank;
3333aef5e8e0SSatish Balay   a->donotstash   = oldmat->donotstash;
3334aef5e8e0SSatish Balay   a->roworiented  = oldmat->roworiented;
3335aef5e8e0SSatish Balay   a->rowindices   = 0;
33360ac07820SSatish Balay   a->rowvalues    = 0;
33370ac07820SSatish Balay   a->getrowactive = PETSC_FALSE;
333830793edcSSatish Balay   a->barray       = 0;
3339899cda47SBarry Smith   a->rstartbs     = oldmat->rstartbs;
3340899cda47SBarry Smith   a->rendbs       = oldmat->rendbs;
3341899cda47SBarry Smith   a->cstartbs     = oldmat->cstartbs;
3342899cda47SBarry Smith   a->cendbs       = oldmat->cendbs;
33430ac07820SSatish Balay 
3344133cdb44SSatish Balay   /* hash table stuff */
3345133cdb44SSatish Balay   a->ht           = 0;
3346133cdb44SSatish Balay   a->hd           = 0;
3347133cdb44SSatish Balay   a->ht_size      = 0;
3348133cdb44SSatish Balay   a->ht_flag      = oldmat->ht_flag;
334925fdafccSSatish Balay   a->ht_fact      = oldmat->ht_fact;
3350133cdb44SSatish Balay   a->ht_total_ct  = 0;
3351133cdb44SSatish Balay   a->ht_insert_ct = 0;
3352133cdb44SSatish Balay 
3353899cda47SBarry Smith   ierr = PetscMemcpy(a->rangebs,oldmat->rangebs,(a->size+1)*sizeof(PetscInt));CHKERRQ(ierr);
33540ac07820SSatish Balay   if (oldmat->colmap) {
3355aa482453SBarry Smith #if defined(PETSC_USE_CTABLE)
33560f5bd95cSBarry Smith     ierr = PetscTableCreateCopy(oldmat->colmap,&a->colmap);CHKERRQ(ierr);
335748e59246SSatish Balay #else
3358785e854fSJed Brown     ierr = PetscMalloc1((a->Nbs),&a->colmap);CHKERRQ(ierr);
33593bb1ff40SBarry Smith     ierr = PetscLogObjectMemory((PetscObject)mat,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr);
3360b24ad042SBarry Smith     ierr = PetscMemcpy(a->colmap,oldmat->colmap,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr);
336148e59246SSatish Balay #endif
33620ac07820SSatish Balay   } else a->colmap = 0;
33634beb1cfeSHong Zhang 
33640ac07820SSatish Balay   if (oldmat->garray && (len = ((Mat_SeqBAIJ*)(oldmat->B->data))->nbs)) {
3365785e854fSJed Brown     ierr = PetscMalloc1(len,&a->garray);CHKERRQ(ierr);
33663bb1ff40SBarry Smith     ierr = PetscLogObjectMemory((PetscObject)mat,len*sizeof(PetscInt));CHKERRQ(ierr);
3367b24ad042SBarry Smith     ierr = PetscMemcpy(a->garray,oldmat->garray,len*sizeof(PetscInt));CHKERRQ(ierr);
33680ac07820SSatish Balay   } else a->garray = 0;
33690ac07820SSatish Balay 
3370ce94432eSBarry Smith   ierr = MatStashCreate_Private(PetscObjectComm((PetscObject)matin),matin->rmap->bs,&mat->bstash);CHKERRQ(ierr);
33710ac07820SSatish Balay   ierr = VecDuplicate(oldmat->lvec,&a->lvec);CHKERRQ(ierr);
33723bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->lvec);CHKERRQ(ierr);
33730ac07820SSatish Balay   ierr = VecScatterCopy(oldmat->Mvctx,&a->Mvctx);CHKERRQ(ierr);
33743bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->Mvctx);CHKERRQ(ierr);
33757fff6886SHong Zhang 
33762e8a6d31SBarry Smith   ierr    = MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr);
33773bb1ff40SBarry Smith   ierr    = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->A);CHKERRQ(ierr);
33782e8a6d31SBarry Smith   ierr    = MatDuplicate(oldmat->B,cpvalues,&a->B);CHKERRQ(ierr);
33793bb1ff40SBarry Smith   ierr    = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->B);CHKERRQ(ierr);
3380140e18c1SBarry Smith   ierr    = PetscFunctionListDuplicate(((PetscObject)matin)->qlist,&((PetscObject)mat)->qlist);CHKERRQ(ierr);
33810ac07820SSatish Balay   *newmat = mat;
33823a40ed3dSBarry Smith   PetscFunctionReturn(0);
33830ac07820SSatish Balay }
338457b952d6SSatish Balay 
33854a2ae208SSatish Balay #undef __FUNCT__
33865bba2384SShri Abhyankar #define __FUNCT__ "MatLoad_MPIBAIJ"
3387112444f4SShri Abhyankar PetscErrorCode MatLoad_MPIBAIJ(Mat newmat,PetscViewer viewer)
33884683f7a4SShri Abhyankar {
33894683f7a4SShri Abhyankar   PetscErrorCode ierr;
33904683f7a4SShri Abhyankar   int            fd;
33914683f7a4SShri Abhyankar   PetscInt       i,nz,j,rstart,rend;
33924683f7a4SShri Abhyankar   PetscScalar    *vals,*buf;
3393ce94432eSBarry Smith   MPI_Comm       comm;
33944683f7a4SShri Abhyankar   MPI_Status     status;
33954683f7a4SShri Abhyankar   PetscMPIInt    rank,size,maxnz;
33964683f7a4SShri Abhyankar   PetscInt       header[4],*rowlengths = 0,M,N,m,*rowners,*cols;
33970298fd71SBarry Smith   PetscInt       *locrowlens = NULL,*procsnz = NULL,*browners = NULL;
33983059b6faSBarry Smith   PetscInt       jj,*mycols,*ibuf,bs = newmat->rmap->bs,Mbs,mbs,extra_rows,mmax;
33994683f7a4SShri Abhyankar   PetscMPIInt    tag    = ((PetscObject)viewer)->tag;
34000298fd71SBarry Smith   PetscInt       *dlens = NULL,*odlens = NULL,*mask = NULL,*masked1 = NULL,*masked2 = NULL,rowcount,odcount;
34014683f7a4SShri Abhyankar   PetscInt       dcount,kmax,k,nzcount,tmp,mend,sizesset=1,grows,gcols;
34024683f7a4SShri Abhyankar 
34034683f7a4SShri Abhyankar   PetscFunctionBegin;
3404ce94432eSBarry Smith   ierr = PetscObjectGetComm((PetscObject)viewer,&comm);CHKERRQ(ierr);
34050298fd71SBarry Smith   ierr = PetscOptionsBegin(comm,NULL,"Options for loading MPIBAIJ matrix 2","Mat");CHKERRQ(ierr);
34060298fd71SBarry Smith   ierr = PetscOptionsInt("-matload_block_size","Set the blocksize used to store the matrix","MatLoad",bs,&bs,NULL);CHKERRQ(ierr);
34074683f7a4SShri Abhyankar   ierr = PetscOptionsEnd();CHKERRQ(ierr);
34083059b6faSBarry Smith   if (bs < 0) bs = 1;
34094683f7a4SShri Abhyankar 
34104683f7a4SShri Abhyankar   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
34114683f7a4SShri Abhyankar   ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr);
34124683f7a4SShri Abhyankar   if (!rank) {
34134683f7a4SShri Abhyankar     ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr);
34144683f7a4SShri Abhyankar     ierr = PetscBinaryRead(fd,(char*)header,4,PETSC_INT);CHKERRQ(ierr);
34154683f7a4SShri Abhyankar     if (header[0] != MAT_FILE_CLASSID) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"not matrix object");
34164683f7a4SShri Abhyankar   }
34174683f7a4SShri Abhyankar 
34184683f7a4SShri Abhyankar   if (newmat->rmap->n < 0 && newmat->rmap->N < 0 && newmat->cmap->n < 0 && newmat->cmap->N < 0) sizesset = 0;
34194683f7a4SShri Abhyankar 
34204683f7a4SShri Abhyankar   ierr = MPI_Bcast(header+1,3,MPIU_INT,0,comm);CHKERRQ(ierr);
34214683f7a4SShri Abhyankar   M    = header[1]; N = header[2];
34224683f7a4SShri Abhyankar 
34234683f7a4SShri Abhyankar   /* If global rows/cols are set to PETSC_DECIDE, set it to the sizes given in the file */
34244683f7a4SShri Abhyankar   if (sizesset && newmat->rmap->N < 0) newmat->rmap->N = M;
34254683f7a4SShri Abhyankar   if (sizesset && newmat->cmap->N < 0) newmat->cmap->N = N;
34264683f7a4SShri Abhyankar 
34274683f7a4SShri Abhyankar   /* If global sizes are set, check if they are consistent with that given in the file */
34284683f7a4SShri Abhyankar   if (sizesset) {
34294683f7a4SShri Abhyankar     ierr = MatGetSize(newmat,&grows,&gcols);CHKERRQ(ierr);
34304683f7a4SShri Abhyankar   }
3431abd38a8fSBarry Smith   if (sizesset && newmat->rmap->N != grows) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED, "Inconsistent # of rows:Matrix in file has (%d) and input matrix has (%d)",M,grows);
3432abd38a8fSBarry Smith   if (sizesset && newmat->cmap->N != gcols) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED, "Inconsistent # of cols:Matrix in file has (%d) and input matrix has (%d)",N,gcols);
34334683f7a4SShri Abhyankar 
3434ce94432eSBarry Smith   if (M != N) SETERRQ(PetscObjectComm((PetscObject)viewer),PETSC_ERR_SUP,"Can only do square matrices");
34354683f7a4SShri Abhyankar 
34364683f7a4SShri Abhyankar   /*
34374683f7a4SShri Abhyankar      This code adds extra rows to make sure the number of rows is
34384683f7a4SShri Abhyankar      divisible by the blocksize
34394683f7a4SShri Abhyankar   */
34404683f7a4SShri Abhyankar   Mbs        = M/bs;
34414683f7a4SShri Abhyankar   extra_rows = bs - M + bs*Mbs;
34424683f7a4SShri Abhyankar   if (extra_rows == bs) extra_rows = 0;
34434683f7a4SShri Abhyankar   else                  Mbs++;
34444683f7a4SShri Abhyankar   if (extra_rows && !rank) {
34454683f7a4SShri Abhyankar     ierr = PetscInfo(viewer,"Padding loaded matrix to match blocksize\n");CHKERRQ(ierr);
34464683f7a4SShri Abhyankar   }
34474683f7a4SShri Abhyankar 
34484683f7a4SShri Abhyankar   /* determine ownership of all rows */
34494683f7a4SShri Abhyankar   if (newmat->rmap->n < 0) { /* PETSC_DECIDE */
34504683f7a4SShri Abhyankar     mbs = Mbs/size + ((Mbs % size) > rank);
34514683f7a4SShri Abhyankar     m   = mbs*bs;
34524683f7a4SShri Abhyankar   } else { /* User set */
34534683f7a4SShri Abhyankar     m   = newmat->rmap->n;
34544683f7a4SShri Abhyankar     mbs = m/bs;
34554683f7a4SShri Abhyankar   }
3456dcca6d9dSJed Brown   ierr = PetscMalloc2(size+1,&rowners,size+1,&browners);CHKERRQ(ierr);
34574683f7a4SShri Abhyankar   ierr = MPI_Allgather(&mbs,1,MPIU_INT,rowners+1,1,MPIU_INT,comm);CHKERRQ(ierr);
34584683f7a4SShri Abhyankar 
34594683f7a4SShri Abhyankar   /* process 0 needs enough room for process with most rows */
34604683f7a4SShri Abhyankar   if (!rank) {
34614683f7a4SShri Abhyankar     mmax = rowners[1];
34621251c579SMatthew G Knepley     for (i=2; i<=size; i++) {
34634683f7a4SShri Abhyankar       mmax = PetscMax(mmax,rowners[i]);
34644683f7a4SShri Abhyankar     }
34654683f7a4SShri Abhyankar     mmax*=bs;
34663964eb88SJed Brown   } else mmax = -1;             /* unused, but compiler warns anyway */
34674683f7a4SShri Abhyankar 
34684683f7a4SShri Abhyankar   rowners[0] = 0;
34694683f7a4SShri Abhyankar   for (i=2; i<=size; i++) rowners[i] += rowners[i-1];
34704683f7a4SShri Abhyankar   for (i=0; i<=size; i++) browners[i] = rowners[i]*bs;
34714683f7a4SShri Abhyankar   rstart = rowners[rank];
34724683f7a4SShri Abhyankar   rend   = rowners[rank+1];
34734683f7a4SShri Abhyankar 
34744683f7a4SShri Abhyankar   /* distribute row lengths to all processors */
3475785e854fSJed Brown   ierr = PetscMalloc1(m,&locrowlens);CHKERRQ(ierr);
34764683f7a4SShri Abhyankar   if (!rank) {
34774683f7a4SShri Abhyankar     mend = m;
34784683f7a4SShri Abhyankar     if (size == 1) mend = mend - extra_rows;
34794683f7a4SShri Abhyankar     ierr = PetscBinaryRead(fd,locrowlens,mend,PETSC_INT);CHKERRQ(ierr);
34804683f7a4SShri Abhyankar     for (j=mend; j<m; j++) locrowlens[j] = 1;
3481785e854fSJed Brown     ierr = PetscMalloc1(mmax,&rowlengths);CHKERRQ(ierr);
34821795a4d1SJed Brown     ierr = PetscCalloc1(size,&procsnz);CHKERRQ(ierr);
34834683f7a4SShri Abhyankar     for (j=0; j<m; j++) {
34844683f7a4SShri Abhyankar       procsnz[0] += locrowlens[j];
34854683f7a4SShri Abhyankar     }
34864683f7a4SShri Abhyankar     for (i=1; i<size; i++) {
34874683f7a4SShri Abhyankar       mend = browners[i+1] - browners[i];
34884683f7a4SShri Abhyankar       if (i == size-1) mend = mend - extra_rows;
34894683f7a4SShri Abhyankar       ierr = PetscBinaryRead(fd,rowlengths,mend,PETSC_INT);CHKERRQ(ierr);
34904683f7a4SShri Abhyankar       for (j=mend; j<browners[i+1] - browners[i]; j++) rowlengths[j] = 1;
34914683f7a4SShri Abhyankar       /* calculate the number of nonzeros on each processor */
34924683f7a4SShri Abhyankar       for (j=0; j<browners[i+1]-browners[i]; j++) {
34934683f7a4SShri Abhyankar         procsnz[i] += rowlengths[j];
34944683f7a4SShri Abhyankar       }
34954683f7a4SShri Abhyankar       ierr = MPI_Send(rowlengths,browners[i+1]-browners[i],MPIU_INT,i,tag,comm);CHKERRQ(ierr);
34964683f7a4SShri Abhyankar     }
34974683f7a4SShri Abhyankar     ierr = PetscFree(rowlengths);CHKERRQ(ierr);
34984683f7a4SShri Abhyankar   } else {
34994683f7a4SShri Abhyankar     ierr = MPI_Recv(locrowlens,m,MPIU_INT,0,tag,comm,&status);CHKERRQ(ierr);
35004683f7a4SShri Abhyankar   }
35014683f7a4SShri Abhyankar 
35024683f7a4SShri Abhyankar   if (!rank) {
35034683f7a4SShri Abhyankar     /* determine max buffer needed and allocate it */
35044683f7a4SShri Abhyankar     maxnz = procsnz[0];
35054683f7a4SShri Abhyankar     for (i=1; i<size; i++) {
35064683f7a4SShri Abhyankar       maxnz = PetscMax(maxnz,procsnz[i]);
35074683f7a4SShri Abhyankar     }
3508785e854fSJed Brown     ierr = PetscMalloc1(maxnz,&cols);CHKERRQ(ierr);
35094683f7a4SShri Abhyankar 
35104683f7a4SShri Abhyankar     /* read in my part of the matrix column indices  */
35114683f7a4SShri Abhyankar     nz     = procsnz[0];
3512785e854fSJed Brown     ierr   = PetscMalloc1((nz+1),&ibuf);CHKERRQ(ierr);
35134683f7a4SShri Abhyankar     mycols = ibuf;
35144683f7a4SShri Abhyankar     if (size == 1) nz -= extra_rows;
35154683f7a4SShri Abhyankar     ierr = PetscBinaryRead(fd,mycols,nz,PETSC_INT);CHKERRQ(ierr);
351626fbe8dcSKarl Rupp     if (size == 1) {
351726fbe8dcSKarl Rupp       for (i=0; i< extra_rows; i++) mycols[nz+i] = M+i;
351826fbe8dcSKarl Rupp     }
35194683f7a4SShri Abhyankar 
35204683f7a4SShri Abhyankar     /* read in every ones (except the last) and ship off */
35214683f7a4SShri Abhyankar     for (i=1; i<size-1; i++) {
35224683f7a4SShri Abhyankar       nz   = procsnz[i];
35234683f7a4SShri Abhyankar       ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr);
35244683f7a4SShri Abhyankar       ierr = MPI_Send(cols,nz,MPIU_INT,i,tag,comm);CHKERRQ(ierr);
35254683f7a4SShri Abhyankar     }
35264683f7a4SShri Abhyankar     /* read in the stuff for the last proc */
35274683f7a4SShri Abhyankar     if (size != 1) {
35284683f7a4SShri Abhyankar       nz   = procsnz[size-1] - extra_rows;  /* the extra rows are not on the disk */
35294683f7a4SShri Abhyankar       ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr);
35304683f7a4SShri Abhyankar       for (i=0; i<extra_rows; i++) cols[nz+i] = M+i;
35314683f7a4SShri Abhyankar       ierr = MPI_Send(cols,nz+extra_rows,MPIU_INT,size-1,tag,comm);CHKERRQ(ierr);
35324683f7a4SShri Abhyankar     }
35334683f7a4SShri Abhyankar     ierr = PetscFree(cols);CHKERRQ(ierr);
35344683f7a4SShri Abhyankar   } else {
35354683f7a4SShri Abhyankar     /* determine buffer space needed for message */
35364683f7a4SShri Abhyankar     nz = 0;
35374683f7a4SShri Abhyankar     for (i=0; i<m; i++) {
35384683f7a4SShri Abhyankar       nz += locrowlens[i];
35394683f7a4SShri Abhyankar     }
3540785e854fSJed Brown     ierr   = PetscMalloc1((nz+1),&ibuf);CHKERRQ(ierr);
35414683f7a4SShri Abhyankar     mycols = ibuf;
35424683f7a4SShri Abhyankar     /* receive message of column indices*/
35434683f7a4SShri Abhyankar     ierr = MPI_Recv(mycols,nz,MPIU_INT,0,tag,comm,&status);CHKERRQ(ierr);
35444683f7a4SShri Abhyankar     ierr = MPI_Get_count(&status,MPIU_INT,&maxnz);CHKERRQ(ierr);
35454683f7a4SShri Abhyankar     if (maxnz != nz) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file");
35464683f7a4SShri Abhyankar   }
35474683f7a4SShri Abhyankar 
35484683f7a4SShri Abhyankar   /* loop over local rows, determining number of off diagonal entries */
3549dcca6d9dSJed Brown   ierr     = PetscMalloc2(rend-rstart,&dlens,rend-rstart,&odlens);CHKERRQ(ierr);
35501795a4d1SJed Brown   ierr     = PetscCalloc3(Mbs,&mask,Mbs,&masked1,Mbs,&masked2);CHKERRQ(ierr);
35514683f7a4SShri Abhyankar   rowcount = 0; nzcount = 0;
35524683f7a4SShri Abhyankar   for (i=0; i<mbs; i++) {
35534683f7a4SShri Abhyankar     dcount  = 0;
35544683f7a4SShri Abhyankar     odcount = 0;
35554683f7a4SShri Abhyankar     for (j=0; j<bs; j++) {
35564683f7a4SShri Abhyankar       kmax = locrowlens[rowcount];
35574683f7a4SShri Abhyankar       for (k=0; k<kmax; k++) {
35584683f7a4SShri Abhyankar         tmp = mycols[nzcount++]/bs;
35594683f7a4SShri Abhyankar         if (!mask[tmp]) {
35604683f7a4SShri Abhyankar           mask[tmp] = 1;
35614683f7a4SShri Abhyankar           if (tmp < rstart || tmp >= rend) masked2[odcount++] = tmp;
35624683f7a4SShri Abhyankar           else masked1[dcount++] = tmp;
35634683f7a4SShri Abhyankar         }
35644683f7a4SShri Abhyankar       }
35654683f7a4SShri Abhyankar       rowcount++;
35664683f7a4SShri Abhyankar     }
35674683f7a4SShri Abhyankar 
35684683f7a4SShri Abhyankar     dlens[i]  = dcount;
35694683f7a4SShri Abhyankar     odlens[i] = odcount;
35704683f7a4SShri Abhyankar 
35714683f7a4SShri Abhyankar     /* zero out the mask elements we set */
35724683f7a4SShri Abhyankar     for (j=0; j<dcount; j++) mask[masked1[j]] = 0;
35734683f7a4SShri Abhyankar     for (j=0; j<odcount; j++) mask[masked2[j]] = 0;
35744683f7a4SShri Abhyankar   }
35754683f7a4SShri Abhyankar 
35764683f7a4SShri Abhyankar 
35774683f7a4SShri Abhyankar   if (!sizesset) {
35784683f7a4SShri Abhyankar     ierr = MatSetSizes(newmat,m,m,M+extra_rows,N+extra_rows);CHKERRQ(ierr);
35794683f7a4SShri Abhyankar   }
35804683f7a4SShri Abhyankar   ierr = MatMPIBAIJSetPreallocation(newmat,bs,0,dlens,0,odlens);CHKERRQ(ierr);
35814683f7a4SShri Abhyankar 
35824683f7a4SShri Abhyankar   if (!rank) {
3583785e854fSJed Brown     ierr = PetscMalloc1((maxnz+1),&buf);CHKERRQ(ierr);
35844683f7a4SShri Abhyankar     /* read in my part of the matrix numerical values  */
35854683f7a4SShri Abhyankar     nz     = procsnz[0];
35864683f7a4SShri Abhyankar     vals   = buf;
35874683f7a4SShri Abhyankar     mycols = ibuf;
35884683f7a4SShri Abhyankar     if (size == 1) nz -= extra_rows;
35894683f7a4SShri Abhyankar     ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
359026fbe8dcSKarl Rupp     if (size == 1) {
359126fbe8dcSKarl Rupp       for (i=0; i< extra_rows; i++) vals[nz+i] = 1.0;
359226fbe8dcSKarl Rupp     }
35934683f7a4SShri Abhyankar 
35944683f7a4SShri Abhyankar     /* insert into matrix */
35954683f7a4SShri Abhyankar     jj = rstart*bs;
35964683f7a4SShri Abhyankar     for (i=0; i<m; i++) {
35974683f7a4SShri Abhyankar       ierr    = MatSetValues_MPIBAIJ(newmat,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr);
35984683f7a4SShri Abhyankar       mycols += locrowlens[i];
35994683f7a4SShri Abhyankar       vals   += locrowlens[i];
36004683f7a4SShri Abhyankar       jj++;
36014683f7a4SShri Abhyankar     }
36024683f7a4SShri Abhyankar     /* read in other processors (except the last one) and ship out */
36034683f7a4SShri Abhyankar     for (i=1; i<size-1; i++) {
36044683f7a4SShri Abhyankar       nz   = procsnz[i];
36054683f7a4SShri Abhyankar       vals = buf;
36064683f7a4SShri Abhyankar       ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
3607479e424cSMichael Lange       ierr = MPIULong_Send(vals,nz,MPIU_SCALAR,i,((PetscObject)newmat)->tag,comm);CHKERRQ(ierr);
36084683f7a4SShri Abhyankar     }
36094683f7a4SShri Abhyankar     /* the last proc */
36104683f7a4SShri Abhyankar     if (size != 1) {
36114683f7a4SShri Abhyankar       nz   = procsnz[i] - extra_rows;
36124683f7a4SShri Abhyankar       vals = buf;
36134683f7a4SShri Abhyankar       ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
36144683f7a4SShri Abhyankar       for (i=0; i<extra_rows; i++) vals[nz+i] = 1.0;
3615479e424cSMichael Lange       ierr = MPIULong_Send(vals,nz+extra_rows,MPIU_SCALAR,size-1,((PetscObject)newmat)->tag,comm);CHKERRQ(ierr);
36164683f7a4SShri Abhyankar     }
36174683f7a4SShri Abhyankar     ierr = PetscFree(procsnz);CHKERRQ(ierr);
36184683f7a4SShri Abhyankar   } else {
36194683f7a4SShri Abhyankar     /* receive numeric values */
3620785e854fSJed Brown     ierr = PetscMalloc1((nz+1),&buf);CHKERRQ(ierr);
36214683f7a4SShri Abhyankar 
36224683f7a4SShri Abhyankar     /* receive message of values*/
36234683f7a4SShri Abhyankar     vals   = buf;
36244683f7a4SShri Abhyankar     mycols = ibuf;
3625479e424cSMichael Lange     ierr   = MPIULong_Recv(vals,nz,MPIU_SCALAR,0,((PetscObject)newmat)->tag,comm);CHKERRQ(ierr);
36264683f7a4SShri Abhyankar 
36274683f7a4SShri Abhyankar     /* insert into matrix */
36284683f7a4SShri Abhyankar     jj = rstart*bs;
36294683f7a4SShri Abhyankar     for (i=0; i<m; i++) {
36304683f7a4SShri Abhyankar       ierr    = MatSetValues_MPIBAIJ(newmat,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr);
36314683f7a4SShri Abhyankar       mycols += locrowlens[i];
36324683f7a4SShri Abhyankar       vals   += locrowlens[i];
36334683f7a4SShri Abhyankar       jj++;
36344683f7a4SShri Abhyankar     }
36354683f7a4SShri Abhyankar   }
36364683f7a4SShri Abhyankar   ierr = PetscFree(locrowlens);CHKERRQ(ierr);
36374683f7a4SShri Abhyankar   ierr = PetscFree(buf);CHKERRQ(ierr);
36384683f7a4SShri Abhyankar   ierr = PetscFree(ibuf);CHKERRQ(ierr);
36394683f7a4SShri Abhyankar   ierr = PetscFree2(rowners,browners);CHKERRQ(ierr);
36404683f7a4SShri Abhyankar   ierr = PetscFree2(dlens,odlens);CHKERRQ(ierr);
36414683f7a4SShri Abhyankar   ierr = PetscFree3(mask,masked1,masked2);CHKERRQ(ierr);
36424683f7a4SShri Abhyankar   ierr = MatAssemblyBegin(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
36434683f7a4SShri Abhyankar   ierr = MatAssemblyEnd(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
36444683f7a4SShri Abhyankar   PetscFunctionReturn(0);
36454683f7a4SShri Abhyankar }
36464683f7a4SShri Abhyankar 
36474683f7a4SShri Abhyankar #undef __FUNCT__
36484a2ae208SSatish Balay #define __FUNCT__ "MatMPIBAIJSetHashTableFactor"
3649133cdb44SSatish Balay /*@
3650133cdb44SSatish Balay    MatMPIBAIJSetHashTableFactor - Sets the factor required to compute the size of the HashTable.
3651133cdb44SSatish Balay 
3652133cdb44SSatish Balay    Input Parameters:
3653133cdb44SSatish Balay .  mat  - the matrix
3654133cdb44SSatish Balay .  fact - factor
3655133cdb44SSatish Balay 
3656c5eb9154SBarry Smith    Not Collective, each process can use a different factor
3657fee21e36SBarry Smith 
36588c890885SBarry Smith    Level: advanced
36598c890885SBarry Smith 
3660133cdb44SSatish Balay   Notes:
36618c07d4e3SBarry Smith    This can also be set by the command line option: -mat_use_hash_table <fact>
3662133cdb44SSatish Balay 
3663133cdb44SSatish Balay .keywords: matrix, hashtable, factor, HT
3664133cdb44SSatish Balay 
3665133cdb44SSatish Balay .seealso: MatSetOption()
3666133cdb44SSatish Balay @*/
36677087cfbeSBarry Smith PetscErrorCode  MatMPIBAIJSetHashTableFactor(Mat mat,PetscReal fact)
3668133cdb44SSatish Balay {
36694ac538c5SBarry Smith   PetscErrorCode ierr;
36705bf65638SKris Buschelman 
36715bf65638SKris Buschelman   PetscFunctionBegin;
36724ac538c5SBarry Smith   ierr = PetscTryMethod(mat,"MatSetHashTableFactor_C",(Mat,PetscReal),(mat,fact));CHKERRQ(ierr);
36735bf65638SKris Buschelman   PetscFunctionReturn(0);
36745bf65638SKris Buschelman }
36755bf65638SKris Buschelman 
36765bf65638SKris Buschelman #undef __FUNCT__
36775bf65638SKris Buschelman #define __FUNCT__ "MatSetHashTableFactor_MPIBAIJ"
36787087cfbeSBarry Smith PetscErrorCode  MatSetHashTableFactor_MPIBAIJ(Mat mat,PetscReal fact)
36795bf65638SKris Buschelman {
368025fdafccSSatish Balay   Mat_MPIBAIJ *baij;
3681133cdb44SSatish Balay 
3682133cdb44SSatish Balay   PetscFunctionBegin;
3683133cdb44SSatish Balay   baij          = (Mat_MPIBAIJ*)mat->data;
3684133cdb44SSatish Balay   baij->ht_fact = fact;
3685133cdb44SSatish Balay   PetscFunctionReturn(0);
3686133cdb44SSatish Balay }
3687f2a5309cSSatish Balay 
36884a2ae208SSatish Balay #undef __FUNCT__
36894a2ae208SSatish Balay #define __FUNCT__ "MatMPIBAIJGetSeqBAIJ"
36909230625dSJed Brown PetscErrorCode  MatMPIBAIJGetSeqBAIJ(Mat A,Mat *Ad,Mat *Ao,const PetscInt *colmap[])
3691f2a5309cSSatish Balay {
3692f2a5309cSSatish Balay   Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data;
36935fd66863SKarl Rupp 
3694f2a5309cSSatish Balay   PetscFunctionBegin;
369521e72a00SBarry Smith   if (Ad)     *Ad     = a->A;
369621e72a00SBarry Smith   if (Ao)     *Ao     = a->B;
369721e72a00SBarry Smith   if (colmap) *colmap = a->garray;
3698f2a5309cSSatish Balay   PetscFunctionReturn(0);
3699f2a5309cSSatish Balay }
370085535b8eSBarry Smith 
370185535b8eSBarry Smith /*
370285535b8eSBarry Smith     Special version for direct calls from Fortran (to eliminate two function call overheads
370385535b8eSBarry Smith */
370485535b8eSBarry Smith #if defined(PETSC_HAVE_FORTRAN_CAPS)
370585535b8eSBarry Smith #define matmpibaijsetvaluesblocked_ MATMPIBAIJSETVALUESBLOCKED
370685535b8eSBarry Smith #elif !defined(PETSC_HAVE_FORTRAN_UNDERSCORE)
370785535b8eSBarry Smith #define matmpibaijsetvaluesblocked_ matmpibaijsetvaluesblocked
370885535b8eSBarry Smith #endif
370985535b8eSBarry Smith 
371085535b8eSBarry Smith #undef __FUNCT__
371185535b8eSBarry Smith #define __FUNCT__ "matmpibiajsetvaluesblocked"
371285535b8eSBarry Smith /*@C
371385535b8eSBarry Smith   MatMPIBAIJSetValuesBlocked - Direct Fortran call to replace call to MatSetValuesBlocked()
371485535b8eSBarry Smith 
371585535b8eSBarry Smith   Collective on Mat
371685535b8eSBarry Smith 
371785535b8eSBarry Smith   Input Parameters:
371885535b8eSBarry Smith + mat - the matrix
371985535b8eSBarry Smith . min - number of input rows
372085535b8eSBarry Smith . im - input rows
372185535b8eSBarry Smith . nin - number of input columns
372285535b8eSBarry Smith . in - input columns
372385535b8eSBarry Smith . v - numerical values input
372485535b8eSBarry Smith - addvin - INSERT_VALUES or ADD_VALUES
372585535b8eSBarry Smith 
372685535b8eSBarry Smith   Notes: This has a complete copy of MatSetValuesBlocked_MPIBAIJ() which is terrible code un-reuse.
372785535b8eSBarry Smith 
372885535b8eSBarry Smith   Level: advanced
372985535b8eSBarry Smith 
373085535b8eSBarry Smith .seealso:   MatSetValuesBlocked()
373185535b8eSBarry Smith @*/
373285535b8eSBarry Smith PetscErrorCode matmpibaijsetvaluesblocked_(Mat *matin,PetscInt *min,const PetscInt im[],PetscInt *nin,const PetscInt in[],const MatScalar v[],InsertMode *addvin)
373385535b8eSBarry Smith {
373485535b8eSBarry Smith   /* convert input arguments to C version */
373585535b8eSBarry Smith   Mat        mat  = *matin;
373685535b8eSBarry Smith   PetscInt   m    = *min, n = *nin;
373785535b8eSBarry Smith   InsertMode addv = *addvin;
373885535b8eSBarry Smith 
373985535b8eSBarry Smith   Mat_MPIBAIJ     *baij = (Mat_MPIBAIJ*)mat->data;
374085535b8eSBarry Smith   const MatScalar *value;
374185535b8eSBarry Smith   MatScalar       *barray     = baij->barray;
3742ace3abfcSBarry Smith   PetscBool       roworiented = baij->roworiented;
374385535b8eSBarry Smith   PetscErrorCode  ierr;
374485535b8eSBarry Smith   PetscInt        i,j,ii,jj,row,col,rstart=baij->rstartbs;
374585535b8eSBarry Smith   PetscInt        rend=baij->rendbs,cstart=baij->cstartbs,stepval;
3746d0f46423SBarry Smith   PetscInt        cend=baij->cendbs,bs=mat->rmap->bs,bs2=baij->bs2;
374785535b8eSBarry Smith 
374885535b8eSBarry Smith   PetscFunctionBegin;
374985535b8eSBarry Smith   /* tasks normally handled by MatSetValuesBlocked() */
375026fbe8dcSKarl Rupp   if (mat->insertmode == NOT_SET_VALUES) mat->insertmode = addv;
375185535b8eSBarry Smith #if defined(PETSC_USE_DEBUG)
3752e7e72b3dSBarry Smith   else if (mat->insertmode != addv) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Cannot mix add values and insert values");
3753e32f2f54SBarry Smith   if (mat->factortype) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Not for factored matrix");
375485535b8eSBarry Smith #endif
375585535b8eSBarry Smith   if (mat->assembled) {
375685535b8eSBarry Smith     mat->was_assembled = PETSC_TRUE;
375785535b8eSBarry Smith     mat->assembled     = PETSC_FALSE;
375885535b8eSBarry Smith   }
375985535b8eSBarry Smith   ierr = PetscLogEventBegin(MAT_SetValues,mat,0,0,0);CHKERRQ(ierr);
376085535b8eSBarry Smith 
376185535b8eSBarry Smith 
376285535b8eSBarry Smith   if (!barray) {
3763785e854fSJed Brown     ierr         = PetscMalloc1(bs2,&barray);CHKERRQ(ierr);
376485535b8eSBarry Smith     baij->barray = barray;
376585535b8eSBarry Smith   }
376685535b8eSBarry Smith 
376726fbe8dcSKarl Rupp   if (roworiented) stepval = (n-1)*bs;
376826fbe8dcSKarl Rupp   else stepval = (m-1)*bs;
376926fbe8dcSKarl Rupp 
377085535b8eSBarry Smith   for (i=0; i<m; i++) {
377185535b8eSBarry Smith     if (im[i] < 0) continue;
377285535b8eSBarry Smith #if defined(PETSC_USE_DEBUG)
3773e32f2f54SBarry Smith     if (im[i] >= baij->Mbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large, row %D max %D",im[i],baij->Mbs-1);
377485535b8eSBarry Smith #endif
377585535b8eSBarry Smith     if (im[i] >= rstart && im[i] < rend) {
377685535b8eSBarry Smith       row = im[i] - rstart;
377785535b8eSBarry Smith       for (j=0; j<n; j++) {
377885535b8eSBarry Smith         /* If NumCol = 1 then a copy is not required */
377985535b8eSBarry Smith         if ((roworiented) && (n == 1)) {
378085535b8eSBarry Smith           barray = (MatScalar*)v + i*bs2;
378185535b8eSBarry Smith         } else if ((!roworiented) && (m == 1)) {
378285535b8eSBarry Smith           barray = (MatScalar*)v + j*bs2;
378385535b8eSBarry Smith         } else { /* Here a copy is required */
378485535b8eSBarry Smith           if (roworiented) {
378585535b8eSBarry Smith             value = v + i*(stepval+bs)*bs + j*bs;
378685535b8eSBarry Smith           } else {
378785535b8eSBarry Smith             value = v + j*(stepval+bs)*bs + i*bs;
378885535b8eSBarry Smith           }
378985535b8eSBarry Smith           for (ii=0; ii<bs; ii++,value+=stepval) {
379085535b8eSBarry Smith             for (jj=0; jj<bs; jj++) {
379185535b8eSBarry Smith               *barray++ = *value++;
379285535b8eSBarry Smith             }
379385535b8eSBarry Smith           }
379485535b8eSBarry Smith           barray -=bs2;
379585535b8eSBarry Smith         }
379685535b8eSBarry Smith 
379785535b8eSBarry Smith         if (in[j] >= cstart && in[j] < cend) {
379885535b8eSBarry Smith           col  = in[j] - cstart;
379997e5c40aSBarry Smith           ierr = MatSetValuesBlocked_SeqBAIJ(baij->A,1,&row,1,&col,barray,addv);CHKERRQ(ierr);
380026fbe8dcSKarl Rupp         } else if (in[j] < 0) continue;
380185535b8eSBarry Smith #if defined(PETSC_USE_DEBUG)
3802cb9801acSJed Brown         else if (in[j] >= baij->Nbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large, col %D max %D",in[j],baij->Nbs-1);
380385535b8eSBarry Smith #endif
380485535b8eSBarry Smith         else {
380585535b8eSBarry Smith           if (mat->was_assembled) {
380685535b8eSBarry Smith             if (!baij->colmap) {
3807ab9863d7SBarry Smith               ierr = MatCreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
380885535b8eSBarry Smith             }
380985535b8eSBarry Smith 
381085535b8eSBarry Smith #if defined(PETSC_USE_DEBUG)
381185535b8eSBarry Smith #if defined(PETSC_USE_CTABLE)
381285535b8eSBarry Smith             { PetscInt data;
381385535b8eSBarry Smith               ierr = PetscTableFind(baij->colmap,in[j]+1,&data);CHKERRQ(ierr);
3814e32f2f54SBarry Smith               if ((data - 1) % bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap");
381585535b8eSBarry Smith             }
381685535b8eSBarry Smith #else
3817e32f2f54SBarry Smith             if ((baij->colmap[in[j]] - 1) % bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap");
381885535b8eSBarry Smith #endif
381985535b8eSBarry Smith #endif
382085535b8eSBarry Smith #if defined(PETSC_USE_CTABLE)
382185535b8eSBarry Smith             ierr = PetscTableFind(baij->colmap,in[j]+1,&col);CHKERRQ(ierr);
382285535b8eSBarry Smith             col  = (col - 1)/bs;
382385535b8eSBarry Smith #else
382485535b8eSBarry Smith             col = (baij->colmap[in[j]] - 1)/bs;
382585535b8eSBarry Smith #endif
382685535b8eSBarry Smith             if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) {
3827ab9863d7SBarry Smith               ierr = MatDisAssemble_MPIBAIJ(mat);CHKERRQ(ierr);
382885535b8eSBarry Smith               col  =  in[j];
382985535b8eSBarry Smith             }
383026fbe8dcSKarl Rupp           } else col = in[j];
383197e5c40aSBarry Smith           ierr = MatSetValuesBlocked_SeqBAIJ(baij->B,1,&row,1,&col,barray,addv);CHKERRQ(ierr);
383285535b8eSBarry Smith         }
383385535b8eSBarry Smith       }
383485535b8eSBarry Smith     } else {
383585535b8eSBarry Smith       if (!baij->donotstash) {
383685535b8eSBarry Smith         if (roworiented) {
383785535b8eSBarry Smith           ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
383885535b8eSBarry Smith         } else {
383985535b8eSBarry Smith           ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
384085535b8eSBarry Smith         }
384185535b8eSBarry Smith       }
384285535b8eSBarry Smith     }
384385535b8eSBarry Smith   }
384485535b8eSBarry Smith 
384585535b8eSBarry Smith   /* task normally handled by MatSetValuesBlocked() */
384685535b8eSBarry Smith   ierr = PetscLogEventEnd(MAT_SetValues,mat,0,0,0);CHKERRQ(ierr);
384785535b8eSBarry Smith   PetscFunctionReturn(0);
384885535b8eSBarry Smith }
3849dfb205c3SBarry Smith 
3850dfb205c3SBarry Smith #undef __FUNCT__
3851dfb205c3SBarry Smith #define __FUNCT__ "MatCreateMPIBAIJWithArrays"
3852dfb205c3SBarry Smith /*@
3853dfb205c3SBarry Smith      MatCreateMPIBAIJWithArrays - creates a MPI BAIJ matrix using arrays that contain in standard
3854dfb205c3SBarry Smith          CSR format the local rows.
3855dfb205c3SBarry Smith 
3856dfb205c3SBarry Smith    Collective on MPI_Comm
3857dfb205c3SBarry Smith 
3858dfb205c3SBarry Smith    Input Parameters:
3859dfb205c3SBarry Smith +  comm - MPI communicator
3860dfb205c3SBarry Smith .  bs - the block size, only a block size of 1 is supported
3861dfb205c3SBarry Smith .  m - number of local rows (Cannot be PETSC_DECIDE)
3862dfb205c3SBarry Smith .  n - This value should be the same as the local size used in creating the
3863dfb205c3SBarry Smith        x vector for the matrix-vector product y = Ax. (or PETSC_DECIDE to have
3864dfb205c3SBarry Smith        calculated if N is given) For square matrices n is almost always m.
3865dfb205c3SBarry Smith .  M - number of global rows (or PETSC_DETERMINE to have calculated if m is given)
3866dfb205c3SBarry Smith .  N - number of global columns (or PETSC_DETERMINE to have calculated if n is given)
3867dfb205c3SBarry Smith .   i - row indices
3868dfb205c3SBarry Smith .   j - column indices
3869dfb205c3SBarry Smith -   a - matrix values
3870dfb205c3SBarry Smith 
3871dfb205c3SBarry Smith    Output Parameter:
3872dfb205c3SBarry Smith .   mat - the matrix
3873dfb205c3SBarry Smith 
3874dfb205c3SBarry Smith    Level: intermediate
3875dfb205c3SBarry Smith 
3876dfb205c3SBarry Smith    Notes:
3877dfb205c3SBarry Smith        The i, j, and a arrays ARE copied by this routine into the internal format used by PETSc;
3878dfb205c3SBarry Smith      thus you CANNOT change the matrix entries by changing the values of a[] after you have
3879dfb205c3SBarry Smith      called this routine. Use MatCreateMPIAIJWithSplitArrays() to avoid needing to copy the arrays.
3880dfb205c3SBarry Smith 
38813adadaf3SJed Brown      The order of the entries in values is the same as the block compressed sparse row storage format; that is, it is
38823adadaf3SJed Brown      the same as a three dimensional array in Fortran values(bs,bs,nnz) that contains the first column of the first
38833adadaf3SJed Brown      block, followed by the second column of the first block etc etc.  That is, the blocks are contiguous in memory
38843adadaf3SJed Brown      with column-major ordering within blocks.
38853adadaf3SJed Brown 
3886dfb205c3SBarry Smith        The i and j indices are 0 based, and i indices are indices corresponding to the local j array.
3887dfb205c3SBarry Smith 
3888dfb205c3SBarry Smith .keywords: matrix, aij, compressed row, sparse, parallel
3889dfb205c3SBarry Smith 
3890dfb205c3SBarry Smith .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatMPIAIJSetPreallocation(), MatMPIAIJSetPreallocationCSR(),
389169b1f4b7SBarry Smith           MPIAIJ, MatCreateAIJ(), MatCreateMPIAIJWithSplitArrays()
3892dfb205c3SBarry Smith @*/
38937087cfbeSBarry Smith PetscErrorCode  MatCreateMPIBAIJWithArrays(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,const PetscInt i[],const PetscInt j[],const PetscScalar a[],Mat *mat)
3894dfb205c3SBarry Smith {
3895dfb205c3SBarry Smith   PetscErrorCode ierr;
3896dfb205c3SBarry Smith 
3897dfb205c3SBarry Smith   PetscFunctionBegin;
3898f23aa3ddSBarry Smith   if (i[0]) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"i (row indices) must start with 0");
3899dfb205c3SBarry Smith   if (m < 0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"local number of rows (m) cannot be PETSC_DECIDE, or negative");
3900dfb205c3SBarry Smith   ierr = MatCreate(comm,mat);CHKERRQ(ierr);
3901dfb205c3SBarry Smith   ierr = MatSetSizes(*mat,m,n,M,N);CHKERRQ(ierr);
3902dfb205c3SBarry Smith   ierr = MatSetType(*mat,MATMPISBAIJ);CHKERRQ(ierr);
3903d47bf9aaSJed Brown   ierr = MatSetOption(*mat,MAT_ROW_ORIENTED,PETSC_FALSE);CHKERRQ(ierr);
3904dfb205c3SBarry Smith   ierr = MatMPIBAIJSetPreallocationCSR(*mat,bs,i,j,a);CHKERRQ(ierr);
3905d47bf9aaSJed Brown   ierr = MatSetOption(*mat,MAT_ROW_ORIENTED,PETSC_TRUE);CHKERRQ(ierr);
3906dfb205c3SBarry Smith   PetscFunctionReturn(0);
3907dfb205c3SBarry Smith }
3908