1be1d678aSKris Buschelman #define PETSCMAT_DLL 279bdfe76SSatish Balay 37c4f633dSBarry Smith #include "../src/mat/impls/baij/mpi/mpibaij.h" /*I "petscmat.h" I*/ 4f3da1532SBarry Smith #include "petscblaslapack.h" 579bdfe76SSatish Balay 6dfbe8321SBarry Smith EXTERN PetscErrorCode MatSetUpMultiply_MPIBAIJ(Mat); 7dfbe8321SBarry Smith EXTERN PetscErrorCode DisAssemble_MPIBAIJ(Mat); 8b24ad042SBarry Smith EXTERN PetscErrorCode MatIncreaseOverlap_MPIBAIJ(Mat,PetscInt,IS[],PetscInt); 9b24ad042SBarry Smith EXTERN PetscErrorCode MatGetSubMatrices_MPIBAIJ(Mat,PetscInt,const IS[],const IS[],MatReuse,Mat *[]); 10b24ad042SBarry Smith EXTERN PetscErrorCode MatGetValues_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt [],PetscScalar []); 11b24ad042SBarry Smith EXTERN PetscErrorCode MatSetValues_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt [],const PetscScalar [],InsertMode); 12b24ad042SBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode); 13b24ad042SBarry Smith EXTERN PetscErrorCode MatGetRow_SeqBAIJ(Mat,PetscInt,PetscInt*,PetscInt*[],PetscScalar*[]); 14b24ad042SBarry Smith EXTERN PetscErrorCode MatRestoreRow_SeqBAIJ(Mat,PetscInt,PetscInt*,PetscInt*[],PetscScalar*[]); 15f4df32b1SMatthew Knepley EXTERN PetscErrorCode MatZeroRows_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscScalar); 1693fea6afSBarry Smith 174a2ae208SSatish Balay #undef __FUNCT__ 18985db425SBarry Smith #define __FUNCT__ "MatGetRowMaxAbs_MPIBAIJ" 19985db425SBarry Smith PetscErrorCode MatGetRowMaxAbs_MPIBAIJ(Mat A,Vec v,PetscInt idx[]) 207843d17aSBarry Smith { 217843d17aSBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 22dfbe8321SBarry Smith PetscErrorCode ierr; 23985db425SBarry Smith PetscInt i,*idxb = 0; 2487828ca2SBarry Smith PetscScalar *va,*vb; 257843d17aSBarry Smith Vec vtmp; 267843d17aSBarry Smith 277843d17aSBarry Smith PetscFunctionBegin; 28985db425SBarry Smith ierr = MatGetRowMaxAbs(a->A,v,idx);CHKERRQ(ierr); 291ebc52fbSHong Zhang ierr = VecGetArray(v,&va);CHKERRQ(ierr); 30985db425SBarry Smith if (idx) { 31192daf7cSBarry Smith for (i=0; i<A->rmap->n; i++) {if (PetscAbsScalar(va[i])) idx[i] += A->cmap->rstart;} 32985db425SBarry Smith } 337843d17aSBarry Smith 34d0f46423SBarry Smith ierr = VecCreateSeq(PETSC_COMM_SELF,A->rmap->n,&vtmp);CHKERRQ(ierr); 35d0f46423SBarry Smith if (idx) {ierr = PetscMalloc(A->rmap->n*sizeof(PetscInt),&idxb);CHKERRQ(ierr);} 36985db425SBarry Smith ierr = MatGetRowMaxAbs(a->B,vtmp,idxb);CHKERRQ(ierr); 371ebc52fbSHong Zhang ierr = VecGetArray(vtmp,&vb);CHKERRQ(ierr); 387843d17aSBarry Smith 39d0f46423SBarry Smith for (i=0; i<A->rmap->n; i++){ 40d0f46423SBarry Smith if (PetscAbsScalar(va[i]) < PetscAbsScalar(vb[i])) {va[i] = vb[i]; if (idx) idx[i] = A->cmap->bs*a->garray[idxb[i]/A->cmap->bs] + (idxb[i] % A->cmap->bs);} 417843d17aSBarry Smith } 427843d17aSBarry Smith 431ebc52fbSHong Zhang ierr = VecRestoreArray(v,&va);CHKERRQ(ierr); 441ebc52fbSHong Zhang ierr = VecRestoreArray(vtmp,&vb);CHKERRQ(ierr); 45985db425SBarry Smith if (idxb) {ierr = PetscFree(idxb);CHKERRQ(ierr);} 46ac355199SBarry Smith ierr = VecDestroy(vtmp);CHKERRQ(ierr); 477843d17aSBarry Smith PetscFunctionReturn(0); 487843d17aSBarry Smith } 497843d17aSBarry Smith 507fc3c18eSBarry Smith EXTERN_C_BEGIN 514a2ae208SSatish Balay #undef __FUNCT__ 524a2ae208SSatish Balay #define __FUNCT__ "MatStoreValues_MPIBAIJ" 53be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatStoreValues_MPIBAIJ(Mat mat) 547fc3c18eSBarry Smith { 557fc3c18eSBarry Smith Mat_MPIBAIJ *aij = (Mat_MPIBAIJ *)mat->data; 56dfbe8321SBarry Smith PetscErrorCode ierr; 577fc3c18eSBarry Smith 587fc3c18eSBarry Smith PetscFunctionBegin; 597fc3c18eSBarry Smith ierr = MatStoreValues(aij->A);CHKERRQ(ierr); 607fc3c18eSBarry Smith ierr = MatStoreValues(aij->B);CHKERRQ(ierr); 617fc3c18eSBarry Smith PetscFunctionReturn(0); 627fc3c18eSBarry Smith } 637fc3c18eSBarry Smith EXTERN_C_END 647fc3c18eSBarry Smith 657fc3c18eSBarry Smith EXTERN_C_BEGIN 664a2ae208SSatish Balay #undef __FUNCT__ 674a2ae208SSatish Balay #define __FUNCT__ "MatRetrieveValues_MPIBAIJ" 68be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatRetrieveValues_MPIBAIJ(Mat mat) 697fc3c18eSBarry Smith { 707fc3c18eSBarry Smith Mat_MPIBAIJ *aij = (Mat_MPIBAIJ *)mat->data; 71dfbe8321SBarry Smith PetscErrorCode ierr; 727fc3c18eSBarry Smith 737fc3c18eSBarry Smith PetscFunctionBegin; 747fc3c18eSBarry Smith ierr = MatRetrieveValues(aij->A);CHKERRQ(ierr); 757fc3c18eSBarry Smith ierr = MatRetrieveValues(aij->B);CHKERRQ(ierr); 767fc3c18eSBarry Smith PetscFunctionReturn(0); 777fc3c18eSBarry Smith } 787fc3c18eSBarry Smith EXTERN_C_END 797fc3c18eSBarry Smith 80537820f0SBarry Smith /* 81537820f0SBarry Smith Local utility routine that creates a mapping from the global column 8257b952d6SSatish Balay number to the local number in the off-diagonal part of the local 83e06f6af7SJed Brown storage of the matrix. This is done in a non scalable way since the 8457b952d6SSatish Balay length of colmap equals the global matrix length. 8557b952d6SSatish Balay */ 864a2ae208SSatish Balay #undef __FUNCT__ 874a2ae208SSatish Balay #define __FUNCT__ "CreateColmap_MPIBAIJ_Private" 88dfbe8321SBarry Smith PetscErrorCode CreateColmap_MPIBAIJ_Private(Mat mat) 8957b952d6SSatish Balay { 9057b952d6SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 9157b952d6SSatish Balay Mat_SeqBAIJ *B = (Mat_SeqBAIJ*)baij->B->data; 926849ba73SBarry Smith PetscErrorCode ierr; 93d0f46423SBarry Smith PetscInt nbs = B->nbs,i,bs=mat->rmap->bs; 9457b952d6SSatish Balay 95d64ed03dSBarry Smith PetscFunctionBegin; 96aa482453SBarry Smith #if defined (PETSC_USE_CTABLE) 97f14a1c24SBarry Smith ierr = PetscTableCreate(baij->nbs,&baij->colmap);CHKERRQ(ierr); 9848e59246SSatish Balay for (i=0; i<nbs; i++){ 990f5bd95cSBarry Smith ierr = PetscTableAdd(baij->colmap,baij->garray[i]+1,i*bs+1);CHKERRQ(ierr); 10048e59246SSatish Balay } 10148e59246SSatish Balay #else 102b24ad042SBarry Smith ierr = PetscMalloc((baij->Nbs+1)*sizeof(PetscInt),&baij->colmap);CHKERRQ(ierr); 10352e6d16bSBarry Smith ierr = PetscLogObjectMemory(mat,baij->Nbs*sizeof(PetscInt));CHKERRQ(ierr); 104b24ad042SBarry Smith ierr = PetscMemzero(baij->colmap,baij->Nbs*sizeof(PetscInt));CHKERRQ(ierr); 105928fc39bSSatish Balay for (i=0; i<nbs; i++) baij->colmap[baij->garray[i]] = i*bs+1; 10648e59246SSatish Balay #endif 1073a40ed3dSBarry Smith PetscFunctionReturn(0); 10857b952d6SSatish Balay } 10957b952d6SSatish Balay 110f5e9677aSSatish Balay #define MatSetValues_SeqBAIJ_A_Private(row,col,value,addv) \ 11180c1aa95SSatish Balay { \ 11280c1aa95SSatish Balay \ 11380c1aa95SSatish Balay brow = row/bs; \ 11480c1aa95SSatish Balay rp = aj + ai[brow]; ap = aa + bs2*ai[brow]; \ 115ac7a638eSSatish Balay rmax = aimax[brow]; nrow = ailen[brow]; \ 11680c1aa95SSatish Balay bcol = col/bs; \ 11780c1aa95SSatish Balay ridx = row % bs; cidx = col % bs; \ 118ab26458aSBarry Smith low = 0; high = nrow; \ 119ab26458aSBarry Smith while (high-low > 3) { \ 120ab26458aSBarry Smith t = (low+high)/2; \ 121ab26458aSBarry Smith if (rp[t] > bcol) high = t; \ 122ab26458aSBarry Smith else low = t; \ 123ab26458aSBarry Smith } \ 124ab26458aSBarry Smith for (_i=low; _i<high; _i++) { \ 12580c1aa95SSatish Balay if (rp[_i] > bcol) break; \ 12680c1aa95SSatish Balay if (rp[_i] == bcol) { \ 12780c1aa95SSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 128eada6651SSatish Balay if (addv == ADD_VALUES) *bap += value; \ 129eada6651SSatish Balay else *bap = value; \ 130ac7a638eSSatish Balay goto a_noinsert; \ 13180c1aa95SSatish Balay } \ 13280c1aa95SSatish Balay } \ 13389280ab3SLois Curfman McInnes if (a->nonew == 1) goto a_noinsert; \ 134e32f2f54SBarry Smith if (a->nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \ 135fef13f97SBarry Smith MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,brow,bcol,rmax,aa,ai,aj,rp,ap,aimax,a->nonew,MatScalar); \ 13680c1aa95SSatish Balay N = nrow++ - 1; \ 13780c1aa95SSatish Balay /* shift up all the later entries in this row */ \ 13880c1aa95SSatish Balay for (ii=N; ii>=_i; ii--) { \ 13980c1aa95SSatish Balay rp[ii+1] = rp[ii]; \ 1403eda8832SBarry Smith ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 14180c1aa95SSatish Balay } \ 1423eda8832SBarry Smith if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr); } \ 14380c1aa95SSatish Balay rp[_i] = bcol; \ 14480c1aa95SSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 145ac7a638eSSatish Balay a_noinsert:; \ 14680c1aa95SSatish Balay ailen[brow] = nrow; \ 14780c1aa95SSatish Balay } 14857b952d6SSatish Balay 149ac7a638eSSatish Balay #define MatSetValues_SeqBAIJ_B_Private(row,col,value,addv) \ 150ac7a638eSSatish Balay { \ 151ac7a638eSSatish Balay brow = row/bs; \ 152ac7a638eSSatish Balay rp = bj + bi[brow]; ap = ba + bs2*bi[brow]; \ 153ac7a638eSSatish Balay rmax = bimax[brow]; nrow = bilen[brow]; \ 154ac7a638eSSatish Balay bcol = col/bs; \ 155ac7a638eSSatish Balay ridx = row % bs; cidx = col % bs; \ 156ac7a638eSSatish Balay low = 0; high = nrow; \ 157ac7a638eSSatish Balay while (high-low > 3) { \ 158ac7a638eSSatish Balay t = (low+high)/2; \ 159ac7a638eSSatish Balay if (rp[t] > bcol) high = t; \ 160ac7a638eSSatish Balay else low = t; \ 161ac7a638eSSatish Balay } \ 162ac7a638eSSatish Balay for (_i=low; _i<high; _i++) { \ 163ac7a638eSSatish Balay if (rp[_i] > bcol) break; \ 164ac7a638eSSatish Balay if (rp[_i] == bcol) { \ 165ac7a638eSSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 166ac7a638eSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 167ac7a638eSSatish Balay else *bap = value; \ 168ac7a638eSSatish Balay goto b_noinsert; \ 169ac7a638eSSatish Balay } \ 170ac7a638eSSatish Balay } \ 17189280ab3SLois Curfman McInnes if (b->nonew == 1) goto b_noinsert; \ 172e32f2f54SBarry Smith if (b->nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \ 173fef13f97SBarry Smith MatSeqXAIJReallocateAIJ(B,b->mbs,bs2,nrow,brow,bcol,rmax,ba,bi,bj,rp,ap,bimax,b->nonew,MatScalar); \ 174085a36d4SBarry Smith CHKMEMQ;\ 175ac7a638eSSatish Balay N = nrow++ - 1; \ 176ac7a638eSSatish Balay /* shift up all the later entries in this row */ \ 177ac7a638eSSatish Balay for (ii=N; ii>=_i; ii--) { \ 178ac7a638eSSatish Balay rp[ii+1] = rp[ii]; \ 1793eda8832SBarry Smith ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 180ac7a638eSSatish Balay } \ 1813eda8832SBarry Smith if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr);} \ 182ac7a638eSSatish Balay rp[_i] = bcol; \ 183ac7a638eSSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 184ac7a638eSSatish Balay b_noinsert:; \ 185ac7a638eSSatish Balay bilen[brow] = nrow; \ 186ac7a638eSSatish Balay } 187ac7a638eSSatish Balay 1884a2ae208SSatish Balay #undef __FUNCT__ 1894a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_MPIBAIJ" 190b24ad042SBarry Smith PetscErrorCode MatSetValues_MPIBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv) 19157b952d6SSatish Balay { 19257b952d6SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 19393fea6afSBarry Smith MatScalar value; 194273d9f13SBarry Smith PetscTruth roworiented = baij->roworiented; 195dfbe8321SBarry Smith PetscErrorCode ierr; 196b24ad042SBarry Smith PetscInt i,j,row,col; 197d0f46423SBarry Smith PetscInt rstart_orig=mat->rmap->rstart; 198d0f46423SBarry Smith PetscInt rend_orig=mat->rmap->rend,cstart_orig=mat->cmap->rstart; 199d0f46423SBarry Smith PetscInt cend_orig=mat->cmap->rend,bs=mat->rmap->bs; 20057b952d6SSatish Balay 201eada6651SSatish Balay /* Some Variables required in the macro */ 20280c1aa95SSatish Balay Mat A = baij->A; 20380c1aa95SSatish Balay Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)(A)->data; 204b24ad042SBarry Smith PetscInt *aimax=a->imax,*ai=a->i,*ailen=a->ilen,*aj=a->j; 2053eda8832SBarry Smith MatScalar *aa=a->a; 206ac7a638eSSatish Balay 207ac7a638eSSatish Balay Mat B = baij->B; 208ac7a638eSSatish Balay Mat_SeqBAIJ *b = (Mat_SeqBAIJ*)(B)->data; 209b24ad042SBarry Smith PetscInt *bimax=b->imax,*bi=b->i,*bilen=b->ilen,*bj=b->j; 2103eda8832SBarry Smith MatScalar *ba=b->a; 211ac7a638eSSatish Balay 212b24ad042SBarry Smith PetscInt *rp,ii,nrow,_i,rmax,N,brow,bcol; 213b24ad042SBarry Smith PetscInt low,high,t,ridx,cidx,bs2=a->bs2; 2143eda8832SBarry Smith MatScalar *ap,*bap; 21580c1aa95SSatish Balay 216d64ed03dSBarry Smith PetscFunctionBegin; 21771fd2e92SBarry Smith if (v) PetscValidScalarPointer(v,6); 21857b952d6SSatish Balay for (i=0; i<m; i++) { 2195ef9f2a5SBarry Smith if (im[i] < 0) continue; 2202515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 221e32f2f54SBarry Smith if (im[i] >= mat->rmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],mat->rmap->N-1); 222639f9d9dSBarry Smith #endif 22357b952d6SSatish Balay if (im[i] >= rstart_orig && im[i] < rend_orig) { 22457b952d6SSatish Balay row = im[i] - rstart_orig; 22557b952d6SSatish Balay for (j=0; j<n; j++) { 22657b952d6SSatish Balay if (in[j] >= cstart_orig && in[j] < cend_orig){ 22757b952d6SSatish Balay col = in[j] - cstart_orig; 22857b952d6SSatish Balay if (roworiented) value = v[i*n+j]; else value = v[i+j*m]; 229f5e9677aSSatish Balay MatSetValues_SeqBAIJ_A_Private(row,col,value,addv); 23080c1aa95SSatish Balay /* ierr = MatSetValues_SeqBAIJ(baij->A,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 23173959e64SBarry Smith } else if (in[j] < 0) continue; 2322515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 233cb9801acSJed Brown else if (in[j] >= mat->cmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",in[i],mat->cmap->N-1); 234639f9d9dSBarry Smith #endif 23557b952d6SSatish Balay else { 23657b952d6SSatish Balay if (mat->was_assembled) { 237905e6a2fSBarry Smith if (!baij->colmap) { 238905e6a2fSBarry Smith ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 239905e6a2fSBarry Smith } 240aa482453SBarry Smith #if defined (PETSC_USE_CTABLE) 2410f5bd95cSBarry Smith ierr = PetscTableFind(baij->colmap,in[j]/bs + 1,&col);CHKERRQ(ierr); 242bba1ac68SSatish Balay col = col - 1; 24348e59246SSatish Balay #else 244bba1ac68SSatish Balay col = baij->colmap[in[j]/bs] - 1; 24548e59246SSatish Balay #endif 24657b952d6SSatish Balay if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) { 24757b952d6SSatish Balay ierr = DisAssemble_MPIBAIJ(mat);CHKERRQ(ierr); 2488295de27SSatish Balay col = in[j]; 2499bf004c3SSatish Balay /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */ 2509bf004c3SSatish Balay B = baij->B; 2519bf004c3SSatish Balay b = (Mat_SeqBAIJ*)(B)->data; 2529bf004c3SSatish Balay bimax=b->imax;bi=b->i;bilen=b->ilen;bj=b->j; 2539bf004c3SSatish Balay ba=b->a; 254bba1ac68SSatish Balay } else col += in[j]%bs; 2558295de27SSatish Balay } else col = in[j]; 25657b952d6SSatish Balay if (roworiented) value = v[i*n+j]; else value = v[i+j*m]; 25790da58bdSSatish Balay MatSetValues_SeqBAIJ_B_Private(row,col,value,addv); 25890da58bdSSatish Balay /* ierr = MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 25957b952d6SSatish Balay } 26057b952d6SSatish Balay } 261d64ed03dSBarry Smith } else { 262*4cb17eb5SBarry Smith if (mat->nooffprocentries) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Setting off process row %D even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set",im[i]); 26390f02eecSBarry Smith if (!baij->donotstash) { 264ff2fd236SBarry Smith if (roworiented) { 265b400d20cSBarry Smith ierr = MatStashValuesRow_Private(&mat->stash,im[i],n,in,v+i*n,PETSC_FALSE);CHKERRQ(ierr); 266ff2fd236SBarry Smith } else { 267b400d20cSBarry Smith ierr = MatStashValuesCol_Private(&mat->stash,im[i],n,in,v+i,m,PETSC_FALSE);CHKERRQ(ierr); 26857b952d6SSatish Balay } 26957b952d6SSatish Balay } 27057b952d6SSatish Balay } 27190f02eecSBarry Smith } 2723a40ed3dSBarry Smith PetscFunctionReturn(0); 27357b952d6SSatish Balay } 27457b952d6SSatish Balay 2754a2ae208SSatish Balay #undef __FUNCT__ 27697e5c40aSBarry Smith #define __FUNCT__ "MatSetValuesBlocked_MPIBAIJ" 27797e5c40aSBarry Smith PetscErrorCode MatSetValuesBlocked_MPIBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv) 278ab26458aSBarry Smith { 279ab26458aSBarry Smith Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 280dd6ea824SBarry Smith const PetscScalar *value; 281f15d580aSBarry Smith MatScalar *barray=baij->barray; 282273d9f13SBarry Smith PetscTruth roworiented = baij->roworiented; 283dfbe8321SBarry Smith PetscErrorCode ierr; 284899cda47SBarry Smith PetscInt i,j,ii,jj,row,col,rstart=baij->rstartbs; 285899cda47SBarry Smith PetscInt rend=baij->rendbs,cstart=baij->cstartbs,stepval; 286d0f46423SBarry Smith PetscInt cend=baij->cendbs,bs=mat->rmap->bs,bs2=baij->bs2; 287ab26458aSBarry Smith 288b16ae2b1SBarry Smith PetscFunctionBegin; 28930793edcSSatish Balay if(!barray) { 29082502324SSatish Balay ierr = PetscMalloc(bs2*sizeof(MatScalar),&barray);CHKERRQ(ierr); 29182502324SSatish Balay baij->barray = barray; 29230793edcSSatish Balay } 29330793edcSSatish Balay 294ab26458aSBarry Smith if (roworiented) { 295ab26458aSBarry Smith stepval = (n-1)*bs; 296ab26458aSBarry Smith } else { 297ab26458aSBarry Smith stepval = (m-1)*bs; 298ab26458aSBarry Smith } 299ab26458aSBarry Smith for (i=0; i<m; i++) { 3005ef9f2a5SBarry Smith if (im[i] < 0) continue; 3012515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 302e32f2f54SBarry Smith if (im[i] >= baij->Mbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large, row %D max %D",im[i],baij->Mbs-1); 303ab26458aSBarry Smith #endif 304ab26458aSBarry Smith if (im[i] >= rstart && im[i] < rend) { 305ab26458aSBarry Smith row = im[i] - rstart; 306ab26458aSBarry Smith for (j=0; j<n; j++) { 30715b57d14SSatish Balay /* If NumCol = 1 then a copy is not required */ 30815b57d14SSatish Balay if ((roworiented) && (n == 1)) { 309f15d580aSBarry Smith barray = (MatScalar*)v + i*bs2; 31015b57d14SSatish Balay } else if((!roworiented) && (m == 1)) { 311f15d580aSBarry Smith barray = (MatScalar*)v + j*bs2; 31215b57d14SSatish Balay } else { /* Here a copy is required */ 313ab26458aSBarry Smith if (roworiented) { 31453ef36baSBarry Smith value = v + (i*(stepval+bs) + j)*bs; 315ab26458aSBarry Smith } else { 31653ef36baSBarry Smith value = v + (j*(stepval+bs) + i)*bs; 317abef11f7SSatish Balay } 31853ef36baSBarry Smith for (ii=0; ii<bs; ii++,value+=bs+stepval) { 31947513183SBarry Smith for (jj=0; jj<bs; jj++) { 32053ef36baSBarry Smith barray[jj] = value[jj]; 32147513183SBarry Smith } 32253ef36baSBarry Smith barray += bs; 32347513183SBarry Smith } 32430793edcSSatish Balay barray -= bs2; 32515b57d14SSatish Balay } 326abef11f7SSatish Balay 327abef11f7SSatish Balay if (in[j] >= cstart && in[j] < cend){ 328abef11f7SSatish Balay col = in[j] - cstart; 32997e5c40aSBarry Smith ierr = MatSetValuesBlocked_SeqBAIJ(baij->A,1,&row,1,&col,barray,addv);CHKERRQ(ierr); 330ab26458aSBarry Smith } 3315ef9f2a5SBarry Smith else if (in[j] < 0) continue; 3322515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 333cb9801acSJed Brown else if (in[j] >= baij->Nbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large, col %D max %D",in[j],baij->Nbs-1); 334ab26458aSBarry Smith #endif 335ab26458aSBarry Smith else { 336ab26458aSBarry Smith if (mat->was_assembled) { 337ab26458aSBarry Smith if (!baij->colmap) { 338ab26458aSBarry Smith ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 339ab26458aSBarry Smith } 340a5eb4965SSatish Balay 3412515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 342aa482453SBarry Smith #if defined (PETSC_USE_CTABLE) 343b24ad042SBarry Smith { PetscInt data; 3440f5bd95cSBarry Smith ierr = PetscTableFind(baij->colmap,in[j]+1,&data);CHKERRQ(ierr); 345e32f2f54SBarry Smith if ((data - 1) % bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap"); 346fa46199cSSatish Balay } 34748e59246SSatish Balay #else 348e32f2f54SBarry Smith if ((baij->colmap[in[j]] - 1) % bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap"); 349a5eb4965SSatish Balay #endif 35048e59246SSatish Balay #endif 351aa482453SBarry Smith #if defined (PETSC_USE_CTABLE) 3520f5bd95cSBarry Smith ierr = PetscTableFind(baij->colmap,in[j]+1,&col);CHKERRQ(ierr); 353fa46199cSSatish Balay col = (col - 1)/bs; 35448e59246SSatish Balay #else 355a5eb4965SSatish Balay col = (baij->colmap[in[j]] - 1)/bs; 35648e59246SSatish Balay #endif 357ab26458aSBarry Smith if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) { 358ab26458aSBarry Smith ierr = DisAssemble_MPIBAIJ(mat);CHKERRQ(ierr); 359ab26458aSBarry Smith col = in[j]; 360ab26458aSBarry Smith } 361ab26458aSBarry Smith } 362ab26458aSBarry Smith else col = in[j]; 36397e5c40aSBarry Smith ierr = MatSetValuesBlocked_SeqBAIJ(baij->B,1,&row,1,&col,barray,addv);CHKERRQ(ierr); 364ab26458aSBarry Smith } 365ab26458aSBarry Smith } 366d64ed03dSBarry Smith } else { 367*4cb17eb5SBarry Smith if (mat->nooffprocentries) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Setting off process row %D even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set",im[i]); 368ab26458aSBarry Smith if (!baij->donotstash) { 369ff2fd236SBarry Smith if (roworiented) { 3706fa18ffdSBarry Smith ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 371ff2fd236SBarry Smith } else { 3726fa18ffdSBarry Smith ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 373ff2fd236SBarry Smith } 374abef11f7SSatish Balay } 375ab26458aSBarry Smith } 376ab26458aSBarry Smith } 3773a40ed3dSBarry Smith PetscFunctionReturn(0); 378ab26458aSBarry Smith } 3796fa18ffdSBarry Smith 3800bdbc534SSatish Balay #define HASH_KEY 0.6180339887 381b24ad042SBarry Smith #define HASH(size,key,tmp) (tmp = (key)*HASH_KEY,(PetscInt)((size)*(tmp-(PetscInt)tmp))) 382b24ad042SBarry Smith /* #define HASH(size,key) ((PetscInt)((size)*fmod(((key)*HASH_KEY),1))) */ 383b24ad042SBarry Smith /* #define HASH(size,key,tmp) ((PetscInt)((size)*fmod(((key)*HASH_KEY),1))) */ 3844a2ae208SSatish Balay #undef __FUNCT__ 38597e5c40aSBarry Smith #define __FUNCT__ "MatSetValues_MPIBAIJ_HT" 38697e5c40aSBarry Smith PetscErrorCode MatSetValues_MPIBAIJ_HT(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv) 3870bdbc534SSatish Balay { 3880bdbc534SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 389273d9f13SBarry Smith PetscTruth roworiented = baij->roworiented; 390dfbe8321SBarry Smith PetscErrorCode ierr; 391b24ad042SBarry Smith PetscInt i,j,row,col; 392d0f46423SBarry Smith PetscInt rstart_orig=mat->rmap->rstart; 393d0f46423SBarry Smith PetscInt rend_orig=mat->rmap->rend,Nbs=baij->Nbs; 394d0f46423SBarry Smith PetscInt h1,key,size=baij->ht_size,bs=mat->rmap->bs,*HT=baij->ht,idx; 395329f5518SBarry Smith PetscReal tmp; 3963eda8832SBarry Smith MatScalar **HD = baij->hd,value; 3972515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 398b24ad042SBarry Smith PetscInt total_ct=baij->ht_total_ct,insert_ct=baij->ht_insert_ct; 3994a15367fSSatish Balay #endif 4000bdbc534SSatish Balay 4010bdbc534SSatish Balay PetscFunctionBegin; 40271fd2e92SBarry Smith if (v) PetscValidScalarPointer(v,6); 4030bdbc534SSatish Balay for (i=0; i<m; i++) { 4042515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 405e32f2f54SBarry Smith if (im[i] < 0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative row"); 406e32f2f54SBarry Smith if (im[i] >= mat->rmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],mat->rmap->N-1); 4070bdbc534SSatish Balay #endif 4080bdbc534SSatish Balay row = im[i]; 409c2760754SSatish Balay if (row >= rstart_orig && row < rend_orig) { 4100bdbc534SSatish Balay for (j=0; j<n; j++) { 4110bdbc534SSatish Balay col = in[j]; 4126fa18ffdSBarry Smith if (roworiented) value = v[i*n+j]; else value = v[i+j*m]; 413b24ad042SBarry Smith /* Look up PetscInto the Hash Table */ 414c2760754SSatish Balay key = (row/bs)*Nbs+(col/bs)+1; 415c2760754SSatish Balay h1 = HASH(size,key,tmp); 4160bdbc534SSatish Balay 417c2760754SSatish Balay 418c2760754SSatish Balay idx = h1; 4192515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 420187ce0cbSSatish Balay insert_ct++; 421187ce0cbSSatish Balay total_ct++; 422187ce0cbSSatish Balay if (HT[idx] != key) { 423187ce0cbSSatish Balay for (idx=h1; (idx<size) && (HT[idx]!=key); idx++,total_ct++); 424187ce0cbSSatish Balay if (idx == size) { 425187ce0cbSSatish Balay for (idx=0; (idx<h1) && (HT[idx]!=key); idx++,total_ct++); 426187ce0cbSSatish Balay if (idx == h1) { 427e32f2f54SBarry Smith SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"(%D,%D) has no entry in the hash table", row, col); 428187ce0cbSSatish Balay } 429187ce0cbSSatish Balay } 430187ce0cbSSatish Balay } 431187ce0cbSSatish Balay #else 432c2760754SSatish Balay if (HT[idx] != key) { 433c2760754SSatish Balay for (idx=h1; (idx<size) && (HT[idx]!=key); idx++); 434c2760754SSatish Balay if (idx == size) { 435c2760754SSatish Balay for (idx=0; (idx<h1) && (HT[idx]!=key); idx++); 436c2760754SSatish Balay if (idx == h1) { 437e32f2f54SBarry Smith SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"(%D,%D) has no entry in the hash table", row, col); 438c2760754SSatish Balay } 439c2760754SSatish Balay } 440c2760754SSatish Balay } 441187ce0cbSSatish Balay #endif 442c2760754SSatish Balay /* A HASH table entry is found, so insert the values at the correct address */ 443c2760754SSatish Balay if (addv == ADD_VALUES) *(HD[idx]+ (col % bs)*bs + (row % bs)) += value; 444c2760754SSatish Balay else *(HD[idx]+ (col % bs)*bs + (row % bs)) = value; 4450bdbc534SSatish Balay } 4460bdbc534SSatish Balay } else { 4470bdbc534SSatish Balay if (!baij->donotstash) { 448ff2fd236SBarry Smith if (roworiented) { 449b400d20cSBarry Smith ierr = MatStashValuesRow_Private(&mat->stash,im[i],n,in,v+i*n,PETSC_FALSE);CHKERRQ(ierr); 450ff2fd236SBarry Smith } else { 451b400d20cSBarry Smith ierr = MatStashValuesCol_Private(&mat->stash,im[i],n,in,v+i,m,PETSC_FALSE);CHKERRQ(ierr); 4520bdbc534SSatish Balay } 4530bdbc534SSatish Balay } 4540bdbc534SSatish Balay } 4550bdbc534SSatish Balay } 4562515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 457187ce0cbSSatish Balay baij->ht_total_ct = total_ct; 458187ce0cbSSatish Balay baij->ht_insert_ct = insert_ct; 459187ce0cbSSatish Balay #endif 4600bdbc534SSatish Balay PetscFunctionReturn(0); 4610bdbc534SSatish Balay } 4620bdbc534SSatish Balay 4634a2ae208SSatish Balay #undef __FUNCT__ 46497e5c40aSBarry Smith #define __FUNCT__ "MatSetValuesBlocked_MPIBAIJ_HT" 46597e5c40aSBarry Smith PetscErrorCode MatSetValuesBlocked_MPIBAIJ_HT(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv) 4660bdbc534SSatish Balay { 4670bdbc534SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 468273d9f13SBarry Smith PetscTruth roworiented = baij->roworiented; 469dfbe8321SBarry Smith PetscErrorCode ierr; 470b24ad042SBarry Smith PetscInt i,j,ii,jj,row,col; 471899cda47SBarry Smith PetscInt rstart=baij->rstartbs; 472d0f46423SBarry Smith PetscInt rend=mat->rmap->rend,stepval,bs=mat->rmap->bs,bs2=baij->bs2,nbs2=n*bs2; 473b24ad042SBarry Smith PetscInt h1,key,size=baij->ht_size,idx,*HT=baij->ht,Nbs=baij->Nbs; 474329f5518SBarry Smith PetscReal tmp; 4753eda8832SBarry Smith MatScalar **HD = baij->hd,*baij_a; 476dd6ea824SBarry Smith const PetscScalar *v_t,*value; 4772515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 478b24ad042SBarry Smith PetscInt total_ct=baij->ht_total_ct,insert_ct=baij->ht_insert_ct; 4794a15367fSSatish Balay #endif 4800bdbc534SSatish Balay 481d0a41580SSatish Balay PetscFunctionBegin; 482d0a41580SSatish Balay 4830bdbc534SSatish Balay if (roworiented) { 4840bdbc534SSatish Balay stepval = (n-1)*bs; 4850bdbc534SSatish Balay } else { 4860bdbc534SSatish Balay stepval = (m-1)*bs; 4870bdbc534SSatish Balay } 4880bdbc534SSatish Balay for (i=0; i<m; i++) { 4892515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 490e32f2f54SBarry Smith if (im[i] < 0) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %D",im[i]); 491e32f2f54SBarry Smith if (im[i] >= baij->Mbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],baij->Mbs-1); 4920bdbc534SSatish Balay #endif 4930bdbc534SSatish Balay row = im[i]; 494ab715e2cSSatish Balay v_t = v + i*nbs2; 495c2760754SSatish Balay if (row >= rstart && row < rend) { 4960bdbc534SSatish Balay for (j=0; j<n; j++) { 4970bdbc534SSatish Balay col = in[j]; 4980bdbc534SSatish Balay 4990bdbc534SSatish Balay /* Look up into the Hash Table */ 500c2760754SSatish Balay key = row*Nbs+col+1; 501c2760754SSatish Balay h1 = HASH(size,key,tmp); 5020bdbc534SSatish Balay 503c2760754SSatish Balay idx = h1; 5042515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 505187ce0cbSSatish Balay total_ct++; 506187ce0cbSSatish Balay insert_ct++; 507187ce0cbSSatish Balay if (HT[idx] != key) { 508187ce0cbSSatish Balay for (idx=h1; (idx<size) && (HT[idx]!=key); idx++,total_ct++); 509187ce0cbSSatish Balay if (idx == size) { 510187ce0cbSSatish Balay for (idx=0; (idx<h1) && (HT[idx]!=key); idx++,total_ct++); 511187ce0cbSSatish Balay if (idx == h1) { 512e32f2f54SBarry Smith SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"(%D,%D) has no entry in the hash table", row, col); 513187ce0cbSSatish Balay } 514187ce0cbSSatish Balay } 515187ce0cbSSatish Balay } 516187ce0cbSSatish Balay #else 517c2760754SSatish Balay if (HT[idx] != key) { 518c2760754SSatish Balay for (idx=h1; (idx<size) && (HT[idx]!=key); idx++); 519c2760754SSatish Balay if (idx == size) { 520c2760754SSatish Balay for (idx=0; (idx<h1) && (HT[idx]!=key); idx++); 521c2760754SSatish Balay if (idx == h1) { 522e32f2f54SBarry Smith SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"(%D,%D) has no entry in the hash table", row, col); 523c2760754SSatish Balay } 524c2760754SSatish Balay } 525c2760754SSatish Balay } 526187ce0cbSSatish Balay #endif 527c2760754SSatish Balay baij_a = HD[idx]; 5280bdbc534SSatish Balay if (roworiented) { 529c2760754SSatish Balay /*value = v + i*(stepval+bs)*bs + j*bs;*/ 530187ce0cbSSatish Balay /* value = v + (i*(stepval+bs)+j)*bs; */ 531187ce0cbSSatish Balay value = v_t; 532187ce0cbSSatish Balay v_t += bs; 533fef45726SSatish Balay if (addv == ADD_VALUES) { 534c2760754SSatish Balay for (ii=0; ii<bs; ii++,value+=stepval) { 535c2760754SSatish Balay for (jj=ii; jj<bs2; jj+=bs) { 536fef45726SSatish Balay baij_a[jj] += *value++; 537b4cc0f5aSSatish Balay } 538b4cc0f5aSSatish Balay } 539fef45726SSatish Balay } else { 540c2760754SSatish Balay for (ii=0; ii<bs; ii++,value+=stepval) { 541c2760754SSatish Balay for (jj=ii; jj<bs2; jj+=bs) { 542fef45726SSatish Balay baij_a[jj] = *value++; 543fef45726SSatish Balay } 544fef45726SSatish Balay } 545fef45726SSatish Balay } 5460bdbc534SSatish Balay } else { 5470bdbc534SSatish Balay value = v + j*(stepval+bs)*bs + i*bs; 548fef45726SSatish Balay if (addv == ADD_VALUES) { 549b4cc0f5aSSatish Balay for (ii=0; ii<bs; ii++,value+=stepval,baij_a+=bs) { 5500bdbc534SSatish Balay for (jj=0; jj<bs; jj++) { 551fef45726SSatish Balay baij_a[jj] += *value++; 552fef45726SSatish Balay } 553fef45726SSatish Balay } 554fef45726SSatish Balay } else { 555fef45726SSatish Balay for (ii=0; ii<bs; ii++,value+=stepval,baij_a+=bs) { 556fef45726SSatish Balay for (jj=0; jj<bs; jj++) { 557fef45726SSatish Balay baij_a[jj] = *value++; 558fef45726SSatish Balay } 559b4cc0f5aSSatish Balay } 5600bdbc534SSatish Balay } 5610bdbc534SSatish Balay } 5620bdbc534SSatish Balay } 5630bdbc534SSatish Balay } else { 5640bdbc534SSatish Balay if (!baij->donotstash) { 5650bdbc534SSatish Balay if (roworiented) { 5668798bf22SSatish Balay ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 5670bdbc534SSatish Balay } else { 5688798bf22SSatish Balay ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 5690bdbc534SSatish Balay } 5700bdbc534SSatish Balay } 5710bdbc534SSatish Balay } 5720bdbc534SSatish Balay } 5732515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 574187ce0cbSSatish Balay baij->ht_total_ct = total_ct; 575187ce0cbSSatish Balay baij->ht_insert_ct = insert_ct; 576187ce0cbSSatish Balay #endif 5770bdbc534SSatish Balay PetscFunctionReturn(0); 5780bdbc534SSatish Balay } 579133cdb44SSatish Balay 5804a2ae208SSatish Balay #undef __FUNCT__ 5814a2ae208SSatish Balay #define __FUNCT__ "MatGetValues_MPIBAIJ" 582b24ad042SBarry Smith PetscErrorCode MatGetValues_MPIBAIJ(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[]) 583d6de1c52SSatish Balay { 584d6de1c52SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 5856849ba73SBarry Smith PetscErrorCode ierr; 586d0f46423SBarry Smith PetscInt bs=mat->rmap->bs,i,j,bsrstart = mat->rmap->rstart,bsrend = mat->rmap->rend; 587d0f46423SBarry Smith PetscInt bscstart = mat->cmap->rstart,bscend = mat->cmap->rend,row,col,data; 588d6de1c52SSatish Balay 589133cdb44SSatish Balay PetscFunctionBegin; 590d6de1c52SSatish Balay for (i=0; i<m; i++) { 591e32f2f54SBarry Smith if (idxm[i] < 0) continue; /* SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %D",idxm[i]);*/ 592e32f2f54SBarry Smith if (idxm[i] >= mat->rmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",idxm[i],mat->rmap->N-1); 593d6de1c52SSatish Balay if (idxm[i] >= bsrstart && idxm[i] < bsrend) { 594d6de1c52SSatish Balay row = idxm[i] - bsrstart; 595d6de1c52SSatish Balay for (j=0; j<n; j++) { 596e32f2f54SBarry Smith if (idxn[j] < 0) continue; /* SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative column: %D",idxn[j]); */ 597e32f2f54SBarry Smith if (idxn[j] >= mat->cmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",idxn[j],mat->cmap->N-1); 598d6de1c52SSatish Balay if (idxn[j] >= bscstart && idxn[j] < bscend){ 599d6de1c52SSatish Balay col = idxn[j] - bscstart; 60098dd23e9SBarry Smith ierr = MatGetValues_SeqBAIJ(baij->A,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr); 601d64ed03dSBarry Smith } else { 602905e6a2fSBarry Smith if (!baij->colmap) { 603905e6a2fSBarry Smith ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 604905e6a2fSBarry Smith } 605aa482453SBarry Smith #if defined (PETSC_USE_CTABLE) 6060f5bd95cSBarry Smith ierr = PetscTableFind(baij->colmap,idxn[j]/bs+1,&data);CHKERRQ(ierr); 607fa46199cSSatish Balay data --; 60848e59246SSatish Balay #else 60948e59246SSatish Balay data = baij->colmap[idxn[j]/bs]-1; 61048e59246SSatish Balay #endif 61148e59246SSatish Balay if((data < 0) || (baij->garray[data/bs] != idxn[j]/bs)) *(v+i*n+j) = 0.0; 612d9d09a02SSatish Balay else { 61348e59246SSatish Balay col = data + idxn[j]%bs; 61498dd23e9SBarry Smith ierr = MatGetValues_SeqBAIJ(baij->B,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr); 615d6de1c52SSatish Balay } 616d6de1c52SSatish Balay } 617d6de1c52SSatish Balay } 618d64ed03dSBarry Smith } else { 619e32f2f54SBarry Smith SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local values currently supported"); 620d6de1c52SSatish Balay } 621d6de1c52SSatish Balay } 6223a40ed3dSBarry Smith PetscFunctionReturn(0); 623d6de1c52SSatish Balay } 624d6de1c52SSatish Balay 6254a2ae208SSatish Balay #undef __FUNCT__ 6264a2ae208SSatish Balay #define __FUNCT__ "MatNorm_MPIBAIJ" 627dfbe8321SBarry Smith PetscErrorCode MatNorm_MPIBAIJ(Mat mat,NormType type,PetscReal *nrm) 628d6de1c52SSatish Balay { 629d6de1c52SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 630d6de1c52SSatish Balay Mat_SeqBAIJ *amat = (Mat_SeqBAIJ*)baij->A->data,*bmat = (Mat_SeqBAIJ*)baij->B->data; 631dfbe8321SBarry Smith PetscErrorCode ierr; 632d0f46423SBarry Smith PetscInt i,j,bs2=baij->bs2,bs=baij->A->rmap->bs,nz,row,col; 633329f5518SBarry Smith PetscReal sum = 0.0; 6343eda8832SBarry Smith MatScalar *v; 635d6de1c52SSatish Balay 636d64ed03dSBarry Smith PetscFunctionBegin; 637d6de1c52SSatish Balay if (baij->size == 1) { 638064f8208SBarry Smith ierr = MatNorm(baij->A,type,nrm);CHKERRQ(ierr); 639d6de1c52SSatish Balay } else { 640d6de1c52SSatish Balay if (type == NORM_FROBENIUS) { 641d6de1c52SSatish Balay v = amat->a; 6428a62d963SHong Zhang nz = amat->nz*bs2; 6438a62d963SHong Zhang for (i=0; i<nz; i++) { 644aa482453SBarry Smith #if defined(PETSC_USE_COMPLEX) 645329f5518SBarry Smith sum += PetscRealPart(PetscConj(*v)*(*v)); v++; 646d6de1c52SSatish Balay #else 647d6de1c52SSatish Balay sum += (*v)*(*v); v++; 648d6de1c52SSatish Balay #endif 649d6de1c52SSatish Balay } 650d6de1c52SSatish Balay v = bmat->a; 6518a62d963SHong Zhang nz = bmat->nz*bs2; 6528a62d963SHong Zhang for (i=0; i<nz; i++) { 653aa482453SBarry Smith #if defined(PETSC_USE_COMPLEX) 654329f5518SBarry Smith sum += PetscRealPart(PetscConj(*v)*(*v)); v++; 655d6de1c52SSatish Balay #else 656d6de1c52SSatish Balay sum += (*v)*(*v); v++; 657d6de1c52SSatish Balay #endif 658d6de1c52SSatish Balay } 6597adad957SLisandro Dalcin ierr = MPI_Allreduce(&sum,nrm,1,MPIU_REAL,MPI_SUM,((PetscObject)mat)->comm);CHKERRQ(ierr); 660064f8208SBarry Smith *nrm = sqrt(*nrm); 6618a62d963SHong Zhang } else if (type == NORM_1) { /* max column sum */ 6628a62d963SHong Zhang PetscReal *tmp,*tmp2; 663899cda47SBarry Smith PetscInt *jj,*garray=baij->garray,cstart=baij->rstartbs; 664fca92195SBarry Smith ierr = PetscMalloc2(mat->cmap->N,PetscReal,&tmp,mat->cmap->N,PetscReal,&tmp2);CHKERRQ(ierr); 665d0f46423SBarry Smith ierr = PetscMemzero(tmp,mat->cmap->N*sizeof(PetscReal));CHKERRQ(ierr); 6668a62d963SHong Zhang v = amat->a; jj = amat->j; 6678a62d963SHong Zhang for (i=0; i<amat->nz; i++) { 6688a62d963SHong Zhang for (j=0; j<bs; j++){ 6698a62d963SHong Zhang col = bs*(cstart + *jj) + j; /* column index */ 6708a62d963SHong Zhang for (row=0; row<bs; row++){ 6718a62d963SHong Zhang tmp[col] += PetscAbsScalar(*v); v++; 6728a62d963SHong Zhang } 6738a62d963SHong Zhang } 6748a62d963SHong Zhang jj++; 6758a62d963SHong Zhang } 6768a62d963SHong Zhang v = bmat->a; jj = bmat->j; 6778a62d963SHong Zhang for (i=0; i<bmat->nz; i++) { 6788a62d963SHong Zhang for (j=0; j<bs; j++){ 6798a62d963SHong Zhang col = bs*garray[*jj] + j; 6808a62d963SHong Zhang for (row=0; row<bs; row++){ 6818a62d963SHong Zhang tmp[col] += PetscAbsScalar(*v); v++; 6828a62d963SHong Zhang } 6838a62d963SHong Zhang } 6848a62d963SHong Zhang jj++; 6858a62d963SHong Zhang } 686d0f46423SBarry Smith ierr = MPI_Allreduce(tmp,tmp2,mat->cmap->N,MPIU_REAL,MPI_SUM,((PetscObject)mat)->comm);CHKERRQ(ierr); 6878a62d963SHong Zhang *nrm = 0.0; 688d0f46423SBarry Smith for (j=0; j<mat->cmap->N; j++) { 6898a62d963SHong Zhang if (tmp2[j] > *nrm) *nrm = tmp2[j]; 6908a62d963SHong Zhang } 691fca92195SBarry Smith ierr = PetscFree2(tmp,tmp2);CHKERRQ(ierr); 6928a62d963SHong Zhang } else if (type == NORM_INFINITY) { /* max row sum */ 693577dd1f9SKris Buschelman PetscReal *sums; 694cb9801acSJed Brown ierr = PetscMalloc(bs*sizeof(PetscReal),&sums);CHKERRQ(ierr); 6958a62d963SHong Zhang sum = 0.0; 6968a62d963SHong Zhang for (j=0; j<amat->mbs; j++) { 6978a62d963SHong Zhang for (row=0; row<bs; row++) sums[row] = 0.0; 6988a62d963SHong Zhang v = amat->a + bs2*amat->i[j]; 6998a62d963SHong Zhang nz = amat->i[j+1]-amat->i[j]; 7008a62d963SHong Zhang for (i=0; i<nz; i++) { 7018a62d963SHong Zhang for (col=0; col<bs; col++){ 7028a62d963SHong Zhang for (row=0; row<bs; row++){ 7038a62d963SHong Zhang sums[row] += PetscAbsScalar(*v); v++; 7048a62d963SHong Zhang } 7058a62d963SHong Zhang } 7068a62d963SHong Zhang } 7078a62d963SHong Zhang v = bmat->a + bs2*bmat->i[j]; 7088a62d963SHong Zhang nz = bmat->i[j+1]-bmat->i[j]; 7098a62d963SHong Zhang for (i=0; i<nz; i++) { 7108a62d963SHong Zhang for (col=0; col<bs; col++){ 7118a62d963SHong Zhang for (row=0; row<bs; row++){ 7128a62d963SHong Zhang sums[row] += PetscAbsScalar(*v); v++; 7138a62d963SHong Zhang } 7148a62d963SHong Zhang } 7158a62d963SHong Zhang } 7168a62d963SHong Zhang for (row=0; row<bs; row++){ 7178a62d963SHong Zhang if (sums[row] > sum) sum = sums[row]; 7188a62d963SHong Zhang } 7198a62d963SHong Zhang } 7207adad957SLisandro Dalcin ierr = MPI_Allreduce(&sum,nrm,1,MPIU_REAL,MPI_MAX,((PetscObject)mat)->comm);CHKERRQ(ierr); 721577dd1f9SKris Buschelman ierr = PetscFree(sums);CHKERRQ(ierr); 722e7e72b3dSBarry Smith } else SETERRQ(((PetscObject)mat)->comm,PETSC_ERR_SUP,"No support for this norm yet"); 723d64ed03dSBarry Smith } 7243a40ed3dSBarry Smith PetscFunctionReturn(0); 725d6de1c52SSatish Balay } 72657b952d6SSatish Balay 727fef45726SSatish Balay /* 728fef45726SSatish Balay Creates the hash table, and sets the table 729fef45726SSatish Balay This table is created only once. 730fef45726SSatish Balay If new entried need to be added to the matrix 731fef45726SSatish Balay then the hash table has to be destroyed and 732fef45726SSatish Balay recreated. 733fef45726SSatish Balay */ 7344a2ae208SSatish Balay #undef __FUNCT__ 7354a2ae208SSatish Balay #define __FUNCT__ "MatCreateHashTable_MPIBAIJ_Private" 736dfbe8321SBarry Smith PetscErrorCode MatCreateHashTable_MPIBAIJ_Private(Mat mat,PetscReal factor) 737596b8d2eSBarry Smith { 738596b8d2eSBarry Smith Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 739596b8d2eSBarry Smith Mat A = baij->A,B=baij->B; 740596b8d2eSBarry Smith Mat_SeqBAIJ *a=(Mat_SeqBAIJ *)A->data,*b=(Mat_SeqBAIJ *)B->data; 741b24ad042SBarry Smith PetscInt i,j,k,nz=a->nz+b->nz,h1,*ai=a->i,*aj=a->j,*bi=b->i,*bj=b->j; 7426849ba73SBarry Smith PetscErrorCode ierr; 743fca92195SBarry Smith PetscInt ht_size,bs2=baij->bs2,rstart=baij->rstartbs; 744899cda47SBarry Smith PetscInt cstart=baij->cstartbs,*garray=baij->garray,row,col,Nbs=baij->Nbs; 745b24ad042SBarry Smith PetscInt *HT,key; 7463eda8832SBarry Smith MatScalar **HD; 747329f5518SBarry Smith PetscReal tmp; 7486cf91177SBarry Smith #if defined(PETSC_USE_INFO) 749b24ad042SBarry Smith PetscInt ct=0,max=0; 7504a15367fSSatish Balay #endif 751fef45726SSatish Balay 752d64ed03dSBarry Smith PetscFunctionBegin; 753fca92195SBarry Smith if (baij->ht) PetscFunctionReturn(0); 754fef45726SSatish Balay 755fca92195SBarry Smith baij->ht_size = (PetscInt)(factor*nz); 756fca92195SBarry Smith ht_size = baij->ht_size; 7570bdbc534SSatish Balay 758fef45726SSatish Balay /* Allocate Memory for Hash Table */ 759fca92195SBarry Smith ierr = PetscMalloc2(ht_size,MatScalar*,&baij->hd,ht_size,PetscInt,&baij->ht);CHKERRQ(ierr); 760fca92195SBarry Smith ierr = PetscMemzero(baij->hd,ht_size*sizeof(MatScalar*));CHKERRQ(ierr); 761fca92195SBarry Smith ierr = PetscMemzero(baij->ht,ht_size*sizeof(PetscInt));CHKERRQ(ierr); 762b9e4cc15SSatish Balay HD = baij->hd; 763a07cd24cSSatish Balay HT = baij->ht; 764b9e4cc15SSatish Balay 765596b8d2eSBarry Smith /* Loop Over A */ 7660bdbc534SSatish Balay for (i=0; i<a->mbs; i++) { 767596b8d2eSBarry Smith for (j=ai[i]; j<ai[i+1]; j++) { 7680bdbc534SSatish Balay row = i+rstart; 7690bdbc534SSatish Balay col = aj[j]+cstart; 770596b8d2eSBarry Smith 771187ce0cbSSatish Balay key = row*Nbs + col + 1; 772fca92195SBarry Smith h1 = HASH(ht_size,key,tmp); 773fca92195SBarry Smith for (k=0; k<ht_size; k++){ 774fca92195SBarry Smith if (!HT[(h1+k)%ht_size]) { 775fca92195SBarry Smith HT[(h1+k)%ht_size] = key; 776fca92195SBarry Smith HD[(h1+k)%ht_size] = a->a + j*bs2; 777596b8d2eSBarry Smith break; 7786cf91177SBarry Smith #if defined(PETSC_USE_INFO) 779187ce0cbSSatish Balay } else { 780187ce0cbSSatish Balay ct++; 781187ce0cbSSatish Balay #endif 782596b8d2eSBarry Smith } 783187ce0cbSSatish Balay } 7846cf91177SBarry Smith #if defined(PETSC_USE_INFO) 785187ce0cbSSatish Balay if (k> max) max = k; 786187ce0cbSSatish Balay #endif 787596b8d2eSBarry Smith } 788596b8d2eSBarry Smith } 789596b8d2eSBarry Smith /* Loop Over B */ 7900bdbc534SSatish Balay for (i=0; i<b->mbs; i++) { 791596b8d2eSBarry Smith for (j=bi[i]; j<bi[i+1]; j++) { 7920bdbc534SSatish Balay row = i+rstart; 7930bdbc534SSatish Balay col = garray[bj[j]]; 794187ce0cbSSatish Balay key = row*Nbs + col + 1; 795fca92195SBarry Smith h1 = HASH(ht_size,key,tmp); 796fca92195SBarry Smith for (k=0; k<ht_size; k++){ 797fca92195SBarry Smith if (!HT[(h1+k)%ht_size]) { 798fca92195SBarry Smith HT[(h1+k)%ht_size] = key; 799fca92195SBarry Smith HD[(h1+k)%ht_size] = b->a + j*bs2; 800596b8d2eSBarry Smith break; 8016cf91177SBarry Smith #if defined(PETSC_USE_INFO) 802187ce0cbSSatish Balay } else { 803187ce0cbSSatish Balay ct++; 804187ce0cbSSatish Balay #endif 805596b8d2eSBarry Smith } 806187ce0cbSSatish Balay } 8076cf91177SBarry Smith #if defined(PETSC_USE_INFO) 808187ce0cbSSatish Balay if (k> max) max = k; 809187ce0cbSSatish Balay #endif 810596b8d2eSBarry Smith } 811596b8d2eSBarry Smith } 812596b8d2eSBarry Smith 813596b8d2eSBarry Smith /* Print Summary */ 8146cf91177SBarry Smith #if defined(PETSC_USE_INFO) 815fca92195SBarry Smith for (i=0,j=0; i<ht_size; i++) { 816596b8d2eSBarry Smith if (HT[i]) {j++;} 817c38d4ed2SBarry Smith } 8181e2582c4SBarry Smith ierr = PetscInfo2(mat,"Average Search = %5.2f,max search = %D\n",(!j)? 0.0:((PetscReal)(ct+j))/j,max);CHKERRQ(ierr); 819187ce0cbSSatish Balay #endif 8203a40ed3dSBarry Smith PetscFunctionReturn(0); 821596b8d2eSBarry Smith } 82257b952d6SSatish Balay 8234a2ae208SSatish Balay #undef __FUNCT__ 8244a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyBegin_MPIBAIJ" 825dfbe8321SBarry Smith PetscErrorCode MatAssemblyBegin_MPIBAIJ(Mat mat,MatAssemblyType mode) 826bbb85fb3SSatish Balay { 827bbb85fb3SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 828dfbe8321SBarry Smith PetscErrorCode ierr; 829b24ad042SBarry Smith PetscInt nstash,reallocs; 830bbb85fb3SSatish Balay InsertMode addv; 831bbb85fb3SSatish Balay 832bbb85fb3SSatish Balay PetscFunctionBegin; 833*4cb17eb5SBarry Smith if (baij->donotstash || mat->nooffprocentries) { 834bbb85fb3SSatish Balay PetscFunctionReturn(0); 835bbb85fb3SSatish Balay } 836bbb85fb3SSatish Balay 837bbb85fb3SSatish Balay /* make sure all processors are either in INSERTMODE or ADDMODE */ 8387adad957SLisandro Dalcin ierr = MPI_Allreduce(&mat->insertmode,&addv,1,MPI_INT,MPI_BOR,((PetscObject)mat)->comm);CHKERRQ(ierr); 839e7e72b3dSBarry Smith if (addv == (ADD_VALUES|INSERT_VALUES)) SETERRQ(((PetscObject)mat)->comm,PETSC_ERR_ARG_WRONGSTATE,"Some processors inserted others added"); 840bbb85fb3SSatish Balay mat->insertmode = addv; /* in case this processor had no cache */ 841bbb85fb3SSatish Balay 842d0f46423SBarry Smith ierr = MatStashScatterBegin_Private(mat,&mat->stash,mat->rmap->range);CHKERRQ(ierr); 8431e2582c4SBarry Smith ierr = MatStashScatterBegin_Private(mat,&mat->bstash,baij->rangebs);CHKERRQ(ierr); 8448798bf22SSatish Balay ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr); 8451e2582c4SBarry Smith ierr = PetscInfo2(mat,"Stash has %D entries,uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr); 84646680499SSatish Balay ierr = MatStashGetInfo_Private(&mat->bstash,&nstash,&reallocs);CHKERRQ(ierr); 8471e2582c4SBarry Smith ierr = PetscInfo2(mat,"Block-Stash has %D entries, uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr); 848bbb85fb3SSatish Balay PetscFunctionReturn(0); 849bbb85fb3SSatish Balay } 850bbb85fb3SSatish Balay 8514a2ae208SSatish Balay #undef __FUNCT__ 8524a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyEnd_MPIBAIJ" 853dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_MPIBAIJ(Mat mat,MatAssemblyType mode) 854bbb85fb3SSatish Balay { 855bbb85fb3SSatish Balay Mat_MPIBAIJ *baij=(Mat_MPIBAIJ*)mat->data; 85691c97fd4SSatish Balay Mat_SeqBAIJ *a=(Mat_SeqBAIJ*)baij->A->data; 8576849ba73SBarry Smith PetscErrorCode ierr; 858b24ad042SBarry Smith PetscInt i,j,rstart,ncols,flg,bs2=baij->bs2; 859e44c0bd4SBarry Smith PetscInt *row,*col; 860e44c0bd4SBarry Smith PetscTruth r1,r2,r3,other_disassembled; 8613eda8832SBarry Smith MatScalar *val; 862bbb85fb3SSatish Balay InsertMode addv = mat->insertmode; 863b24ad042SBarry Smith PetscMPIInt n; 864bbb85fb3SSatish Balay 86591c97fd4SSatish Balay /* do not use 'b=(Mat_SeqBAIJ*)baij->B->data' as B can be reset in disassembly */ 866bbb85fb3SSatish Balay PetscFunctionBegin; 867*4cb17eb5SBarry Smith if (!baij->donotstash && !mat->nooffprocentries) { 868a2d1c673SSatish Balay while (1) { 8698798bf22SSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 870a2d1c673SSatish Balay if (!flg) break; 871a2d1c673SSatish Balay 872bbb85fb3SSatish Balay for (i=0; i<n;) { 873bbb85fb3SSatish Balay /* Now identify the consecutive vals belonging to the same row */ 874bbb85fb3SSatish Balay for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; } 875bbb85fb3SSatish Balay if (j < n) ncols = j-i; 876bbb85fb3SSatish Balay else ncols = n-i; 877bbb85fb3SSatish Balay /* Now assemble all these values with a single function call */ 87897e5c40aSBarry Smith ierr = MatSetValues_MPIBAIJ(mat,1,row+i,ncols,col+i,val+i,addv);CHKERRQ(ierr); 879bbb85fb3SSatish Balay i = j; 880bbb85fb3SSatish Balay } 881bbb85fb3SSatish Balay } 8828798bf22SSatish Balay ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr); 883a2d1c673SSatish Balay /* Now process the block-stash. Since the values are stashed column-oriented, 884a2d1c673SSatish Balay set the roworiented flag to column oriented, and after MatSetValues() 885a2d1c673SSatish Balay restore the original flags */ 886a2d1c673SSatish Balay r1 = baij->roworiented; 887a2d1c673SSatish Balay r2 = a->roworiented; 88891c97fd4SSatish Balay r3 = ((Mat_SeqBAIJ*)baij->B->data)->roworiented; 8897c922b88SBarry Smith baij->roworiented = PETSC_FALSE; 8907c922b88SBarry Smith a->roworiented = PETSC_FALSE; 89191c97fd4SSatish Balay (((Mat_SeqBAIJ*)baij->B->data))->roworiented = PETSC_FALSE; /* b->roworiented */ 892a2d1c673SSatish Balay while (1) { 8938798bf22SSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->bstash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 894a2d1c673SSatish Balay if (!flg) break; 895a2d1c673SSatish Balay 896a2d1c673SSatish Balay for (i=0; i<n;) { 897a2d1c673SSatish Balay /* Now identify the consecutive vals belonging to the same row */ 898a2d1c673SSatish Balay for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; } 899a2d1c673SSatish Balay if (j < n) ncols = j-i; 900a2d1c673SSatish Balay else ncols = n-i; 90197e5c40aSBarry Smith ierr = MatSetValuesBlocked_MPIBAIJ(mat,1,row+i,ncols,col+i,val+i*bs2,addv);CHKERRQ(ierr); 902a2d1c673SSatish Balay i = j; 903a2d1c673SSatish Balay } 904a2d1c673SSatish Balay } 9058798bf22SSatish Balay ierr = MatStashScatterEnd_Private(&mat->bstash);CHKERRQ(ierr); 906a2d1c673SSatish Balay baij->roworiented = r1; 907a2d1c673SSatish Balay a->roworiented = r2; 90891c97fd4SSatish Balay ((Mat_SeqBAIJ*)baij->B->data)->roworiented = r3; /* b->roworiented */ 909bbb85fb3SSatish Balay } 910bbb85fb3SSatish Balay 911bbb85fb3SSatish Balay ierr = MatAssemblyBegin(baij->A,mode);CHKERRQ(ierr); 912bbb85fb3SSatish Balay ierr = MatAssemblyEnd(baij->A,mode);CHKERRQ(ierr); 913bbb85fb3SSatish Balay 914bbb85fb3SSatish Balay /* determine if any processor has disassembled, if so we must 915bbb85fb3SSatish Balay also disassemble ourselfs, in order that we may reassemble. */ 916bbb85fb3SSatish Balay /* 917bbb85fb3SSatish Balay if nonzero structure of submatrix B cannot change then we know that 918bbb85fb3SSatish Balay no processor disassembled thus we can skip this stuff 919bbb85fb3SSatish Balay */ 920bbb85fb3SSatish Balay if (!((Mat_SeqBAIJ*)baij->B->data)->nonew) { 9217adad957SLisandro Dalcin ierr = MPI_Allreduce(&mat->was_assembled,&other_disassembled,1,MPI_INT,MPI_PROD,((PetscObject)mat)->comm);CHKERRQ(ierr); 922bbb85fb3SSatish Balay if (mat->was_assembled && !other_disassembled) { 923bbb85fb3SSatish Balay ierr = DisAssemble_MPIBAIJ(mat);CHKERRQ(ierr); 924bbb85fb3SSatish Balay } 925bbb85fb3SSatish Balay } 926bbb85fb3SSatish Balay 927bbb85fb3SSatish Balay if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) { 928bbb85fb3SSatish Balay ierr = MatSetUpMultiply_MPIBAIJ(mat);CHKERRQ(ierr); 929bbb85fb3SSatish Balay } 93091c97fd4SSatish Balay ((Mat_SeqBAIJ*)baij->B->data)->compressedrow.use = PETSC_TRUE; /* b->compressedrow.use */ 931bbb85fb3SSatish Balay ierr = MatAssemblyBegin(baij->B,mode);CHKERRQ(ierr); 932bbb85fb3SSatish Balay ierr = MatAssemblyEnd(baij->B,mode);CHKERRQ(ierr); 933bbb85fb3SSatish Balay 9346cf91177SBarry Smith #if defined(PETSC_USE_INFO) 935bbb85fb3SSatish Balay if (baij->ht && mode== MAT_FINAL_ASSEMBLY) { 9361e2582c4SBarry Smith ierr = PetscInfo1(mat,"Average Hash Table Search in MatSetValues = %5.2f\n",((PetscReal)baij->ht_total_ct)/baij->ht_insert_ct);CHKERRQ(ierr); 937bbb85fb3SSatish Balay baij->ht_total_ct = 0; 938bbb85fb3SSatish Balay baij->ht_insert_ct = 0; 939bbb85fb3SSatish Balay } 940bbb85fb3SSatish Balay #endif 941bbb85fb3SSatish Balay if (baij->ht_flag && !baij->ht && mode == MAT_FINAL_ASSEMBLY) { 942bbb85fb3SSatish Balay ierr = MatCreateHashTable_MPIBAIJ_Private(mat,baij->ht_fact);CHKERRQ(ierr); 943bbb85fb3SSatish Balay mat->ops->setvalues = MatSetValues_MPIBAIJ_HT; 944bbb85fb3SSatish Balay mat->ops->setvaluesblocked = MatSetValuesBlocked_MPIBAIJ_HT; 945bbb85fb3SSatish Balay } 946bbb85fb3SSatish Balay 947fca92195SBarry Smith ierr = PetscFree2(baij->rowvalues,baij->rowindices);CHKERRQ(ierr); 948606d414cSSatish Balay baij->rowvalues = 0; 949bbb85fb3SSatish Balay PetscFunctionReturn(0); 950bbb85fb3SSatish Balay } 95157b952d6SSatish Balay 9524a2ae208SSatish Balay #undef __FUNCT__ 9534a2ae208SSatish Balay #define __FUNCT__ "MatView_MPIBAIJ_ASCIIorDraworSocket" 9546849ba73SBarry Smith static PetscErrorCode MatView_MPIBAIJ_ASCIIorDraworSocket(Mat mat,PetscViewer viewer) 95557b952d6SSatish Balay { 95657b952d6SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 957dfbe8321SBarry Smith PetscErrorCode ierr; 958b24ad042SBarry Smith PetscMPIInt size = baij->size,rank = baij->rank; 959d0f46423SBarry Smith PetscInt bs = mat->rmap->bs; 96032077d6dSBarry Smith PetscTruth iascii,isdraw; 961b0a32e0cSBarry Smith PetscViewer sviewer; 962f3ef73ceSBarry Smith PetscViewerFormat format; 96357b952d6SSatish Balay 964d64ed03dSBarry Smith PetscFunctionBegin; 9652692d6eeSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr); 9662692d6eeSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr); 96732077d6dSBarry Smith if (iascii) { 968b0a32e0cSBarry Smith ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr); 969456192e2SBarry Smith if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 9704e220ebcSLois Curfman McInnes MatInfo info; 9717adad957SLisandro Dalcin ierr = MPI_Comm_rank(((PetscObject)mat)->comm,&rank);CHKERRQ(ierr); 972d41123aaSBarry Smith ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr); 97377431f27SBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Local rows %D nz %D nz alloced %D bs %D mem %D\n", 974d0f46423SBarry Smith rank,mat->rmap->N,(PetscInt)info.nz_used*bs,(PetscInt)info.nz_allocated*bs, 975d0f46423SBarry Smith mat->rmap->bs,(PetscInt)info.memory);CHKERRQ(ierr); 976d132466eSBarry Smith ierr = MatGetInfo(baij->A,MAT_LOCAL,&info);CHKERRQ(ierr); 97777431f27SBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] on-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used*bs);CHKERRQ(ierr); 978d132466eSBarry Smith ierr = MatGetInfo(baij->B,MAT_LOCAL,&info);CHKERRQ(ierr); 97977431f27SBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] off-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used*bs);CHKERRQ(ierr); 980b0a32e0cSBarry Smith ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 98107d81ca4SBarry Smith ierr = PetscViewerASCIIPrintf(viewer,"Information on VecScatter used in matrix-vector product: \n");CHKERRQ(ierr); 98257b952d6SSatish Balay ierr = VecScatterView(baij->Mvctx,viewer);CHKERRQ(ierr); 9833a40ed3dSBarry Smith PetscFunctionReturn(0); 984fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_INFO) { 98577431f27SBarry Smith ierr = PetscViewerASCIIPrintf(viewer," block size is %D\n",bs);CHKERRQ(ierr); 9863a40ed3dSBarry Smith PetscFunctionReturn(0); 98704929863SHong Zhang } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) { 98804929863SHong Zhang PetscFunctionReturn(0); 98957b952d6SSatish Balay } 99057b952d6SSatish Balay } 99157b952d6SSatish Balay 9920f5bd95cSBarry Smith if (isdraw) { 993b0a32e0cSBarry Smith PetscDraw draw; 99457b952d6SSatish Balay PetscTruth isnull; 995b0a32e0cSBarry Smith ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr); 996b0a32e0cSBarry Smith ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); if (isnull) PetscFunctionReturn(0); 99757b952d6SSatish Balay } 99857b952d6SSatish Balay 99957b952d6SSatish Balay if (size == 1) { 10007adad957SLisandro Dalcin ierr = PetscObjectSetName((PetscObject)baij->A,((PetscObject)mat)->name);CHKERRQ(ierr); 100157b952d6SSatish Balay ierr = MatView(baij->A,viewer);CHKERRQ(ierr); 1002d64ed03dSBarry Smith } else { 100357b952d6SSatish Balay /* assemble the entire matrix onto first processor. */ 100457b952d6SSatish Balay Mat A; 100557b952d6SSatish Balay Mat_SeqBAIJ *Aloc; 1006d0f46423SBarry Smith PetscInt M = mat->rmap->N,N = mat->cmap->N,*ai,*aj,col,i,j,k,*rvals,mbs = baij->mbs; 10073eda8832SBarry Smith MatScalar *a; 100857b952d6SSatish Balay 1009f204ca49SKris Buschelman /* Here we are creating a temporary matrix, so will assume MPIBAIJ is acceptable */ 1010f204ca49SKris Buschelman /* Perhaps this should be the type of mat? */ 10117adad957SLisandro Dalcin ierr = MatCreate(((PetscObject)mat)->comm,&A);CHKERRQ(ierr); 101257b952d6SSatish Balay if (!rank) { 1013f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,M,N,M,N);CHKERRQ(ierr); 1014d64ed03dSBarry Smith } else { 1015f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,0,0,M,N);CHKERRQ(ierr); 101657b952d6SSatish Balay } 1017f204ca49SKris Buschelman ierr = MatSetType(A,MATMPIBAIJ);CHKERRQ(ierr); 1018d0f46423SBarry Smith ierr = MatMPIBAIJSetPreallocation(A,mat->rmap->bs,0,PETSC_NULL,0,PETSC_NULL);CHKERRQ(ierr); 101952e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,A);CHKERRQ(ierr); 102057b952d6SSatish Balay 102157b952d6SSatish Balay /* copy over the A part */ 102257b952d6SSatish Balay Aloc = (Mat_SeqBAIJ*)baij->A->data; 102357b952d6SSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 1024b24ad042SBarry Smith ierr = PetscMalloc(bs*sizeof(PetscInt),&rvals);CHKERRQ(ierr); 102557b952d6SSatish Balay 102657b952d6SSatish Balay for (i=0; i<mbs; i++) { 1027899cda47SBarry Smith rvals[0] = bs*(baij->rstartbs + i); 102857b952d6SSatish Balay for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; } 102957b952d6SSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 1030899cda47SBarry Smith col = (baij->cstartbs+aj[j])*bs; 103157b952d6SSatish Balay for (k=0; k<bs; k++) { 103297e5c40aSBarry Smith ierr = MatSetValues_MPIBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 1033cee3aa6bSSatish Balay col++; a += bs; 103457b952d6SSatish Balay } 103557b952d6SSatish Balay } 103657b952d6SSatish Balay } 103757b952d6SSatish Balay /* copy over the B part */ 103857b952d6SSatish Balay Aloc = (Mat_SeqBAIJ*)baij->B->data; 103957b952d6SSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 104057b952d6SSatish Balay for (i=0; i<mbs; i++) { 1041899cda47SBarry Smith rvals[0] = bs*(baij->rstartbs + i); 104257b952d6SSatish Balay for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; } 104357b952d6SSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 104457b952d6SSatish Balay col = baij->garray[aj[j]]*bs; 104557b952d6SSatish Balay for (k=0; k<bs; k++) { 104697e5c40aSBarry Smith ierr = MatSetValues_MPIBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 1047cee3aa6bSSatish Balay col++; a += bs; 104857b952d6SSatish Balay } 104957b952d6SSatish Balay } 105057b952d6SSatish Balay } 1051606d414cSSatish Balay ierr = PetscFree(rvals);CHKERRQ(ierr); 10526d4a8577SBarry Smith ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 10536d4a8577SBarry Smith ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 105455843e3eSBarry Smith /* 105555843e3eSBarry Smith Everyone has to call to draw the matrix since the graphics waits are 1056b0a32e0cSBarry Smith synchronized across all processors that share the PetscDraw object 105755843e3eSBarry Smith */ 1058b0a32e0cSBarry Smith ierr = PetscViewerGetSingleton(viewer,&sviewer);CHKERRQ(ierr); 1059f14a1c24SBarry Smith if (!rank) { 10607adad957SLisandro Dalcin ierr = PetscObjectSetName((PetscObject)((Mat_MPIBAIJ*)(A->data))->A,((PetscObject)mat)->name);CHKERRQ(ierr); 10616831982aSBarry Smith ierr = MatView(((Mat_MPIBAIJ*)(A->data))->A,sviewer);CHKERRQ(ierr); 106257b952d6SSatish Balay } 1063b0a32e0cSBarry Smith ierr = PetscViewerRestoreSingleton(viewer,&sviewer);CHKERRQ(ierr); 106457b952d6SSatish Balay ierr = MatDestroy(A);CHKERRQ(ierr); 106557b952d6SSatish Balay } 10663a40ed3dSBarry Smith PetscFunctionReturn(0); 106757b952d6SSatish Balay } 106857b952d6SSatish Balay 10694a2ae208SSatish Balay #undef __FUNCT__ 10704a2ae208SSatish Balay #define __FUNCT__ "MatView_MPIBAIJ" 1071dfbe8321SBarry Smith PetscErrorCode MatView_MPIBAIJ(Mat mat,PetscViewer viewer) 107257b952d6SSatish Balay { 1073dfbe8321SBarry Smith PetscErrorCode ierr; 107432077d6dSBarry Smith PetscTruth iascii,isdraw,issocket,isbinary; 107557b952d6SSatish Balay 1076d64ed03dSBarry Smith PetscFunctionBegin; 10772692d6eeSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr); 10782692d6eeSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr); 10792692d6eeSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSCVIEWERSOCKET,&issocket);CHKERRQ(ierr); 10802692d6eeSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary);CHKERRQ(ierr); 108132077d6dSBarry Smith if (iascii || isdraw || issocket || isbinary) { 10827b2a1423SBarry Smith ierr = MatView_MPIBAIJ_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr); 10835cd90555SBarry Smith } else { 108465e19b50SBarry Smith SETERRQ1(((PetscObject)mat)->comm,PETSC_ERR_SUP,"Viewer type %s not supported by MPIBAIJ matrices",((PetscObject)viewer)->type_name); 108557b952d6SSatish Balay } 10863a40ed3dSBarry Smith PetscFunctionReturn(0); 108757b952d6SSatish Balay } 108857b952d6SSatish Balay 10894a2ae208SSatish Balay #undef __FUNCT__ 10904a2ae208SSatish Balay #define __FUNCT__ "MatDestroy_MPIBAIJ" 1091dfbe8321SBarry Smith PetscErrorCode MatDestroy_MPIBAIJ(Mat mat) 109279bdfe76SSatish Balay { 109379bdfe76SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 1094dfbe8321SBarry Smith PetscErrorCode ierr; 109579bdfe76SSatish Balay 1096d64ed03dSBarry Smith PetscFunctionBegin; 1097aa482453SBarry Smith #if defined(PETSC_USE_LOG) 1098d0f46423SBarry Smith PetscLogObjectState((PetscObject)mat,"Rows=%D,Cols=%D",mat->rmap->N,mat->cmap->N); 109979bdfe76SSatish Balay #endif 11008798bf22SSatish Balay ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr); 11018798bf22SSatish Balay ierr = MatStashDestroy_Private(&mat->bstash);CHKERRQ(ierr); 110213ea16ffSHong Zhang if (baij->A){ierr = MatDestroy(baij->A);CHKERRQ(ierr);} 110313ea16ffSHong Zhang if (baij->B){ierr = MatDestroy(baij->B);CHKERRQ(ierr);} 1104aa482453SBarry Smith #if defined (PETSC_USE_CTABLE) 11059c666560SBarry Smith if (baij->colmap) {ierr = PetscTableDestroy(baij->colmap);CHKERRQ(ierr);} 110648e59246SSatish Balay #else 110705b42c5fSBarry Smith ierr = PetscFree(baij->colmap);CHKERRQ(ierr); 110848e59246SSatish Balay #endif 110905b42c5fSBarry Smith ierr = PetscFree(baij->garray);CHKERRQ(ierr); 1110606d414cSSatish Balay if (baij->lvec) {ierr = VecDestroy(baij->lvec);CHKERRQ(ierr);} 1111606d414cSSatish Balay if (baij->Mvctx) {ierr = VecScatterDestroy(baij->Mvctx);CHKERRQ(ierr);} 1112fca92195SBarry Smith ierr = PetscFree2(baij->rowvalues,baij->rowindices);CHKERRQ(ierr); 111305b42c5fSBarry Smith ierr = PetscFree(baij->barray);CHKERRQ(ierr); 1114fca92195SBarry Smith ierr = PetscFree2(baij->hd,baij->ht);CHKERRQ(ierr); 1115899cda47SBarry Smith ierr = PetscFree(baij->rangebs);CHKERRQ(ierr); 1116606d414cSSatish Balay ierr = PetscFree(baij);CHKERRQ(ierr); 1117901853e0SKris Buschelman 1118dbd8c25aSHong Zhang ierr = PetscObjectChangeTypeName((PetscObject)mat,0);CHKERRQ(ierr); 1119901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatStoreValues_C","",PETSC_NULL);CHKERRQ(ierr); 1120901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatRetrieveValues_C","",PETSC_NULL);CHKERRQ(ierr); 1121901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatGetDiagonalBlock_C","",PETSC_NULL);CHKERRQ(ierr); 1122901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPIBAIJSetPreallocation_C","",PETSC_NULL);CHKERRQ(ierr); 1123aac34f13SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPIBAIJSetPreallocationCSR_C","",PETSC_NULL);CHKERRQ(ierr); 1124901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDiagonalScaleLocal_C","",PETSC_NULL);CHKERRQ(ierr); 1125901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatSetHashTableFactor_C","",PETSC_NULL);CHKERRQ(ierr); 11263a40ed3dSBarry Smith PetscFunctionReturn(0); 112779bdfe76SSatish Balay } 112879bdfe76SSatish Balay 11294a2ae208SSatish Balay #undef __FUNCT__ 11304a2ae208SSatish Balay #define __FUNCT__ "MatMult_MPIBAIJ" 1131dfbe8321SBarry Smith PetscErrorCode MatMult_MPIBAIJ(Mat A,Vec xx,Vec yy) 1132cee3aa6bSSatish Balay { 1133cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1134dfbe8321SBarry Smith PetscErrorCode ierr; 1135b24ad042SBarry Smith PetscInt nt; 1136cee3aa6bSSatish Balay 1137d64ed03dSBarry Smith PetscFunctionBegin; 1138e1311b90SBarry Smith ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr); 1139e7e72b3dSBarry Smith if (nt != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx"); 1140e1311b90SBarry Smith ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr); 1141e7e72b3dSBarry Smith if (nt != A->rmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible parition of A and yy"); 1142ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1143f830108cSBarry Smith ierr = (*a->A->ops->mult)(a->A,xx,yy);CHKERRQ(ierr); 1144ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1145f830108cSBarry Smith ierr = (*a->B->ops->multadd)(a->B,a->lvec,yy,yy);CHKERRQ(ierr); 11463a40ed3dSBarry Smith PetscFunctionReturn(0); 1147cee3aa6bSSatish Balay } 1148cee3aa6bSSatish Balay 11494a2ae208SSatish Balay #undef __FUNCT__ 11504a2ae208SSatish Balay #define __FUNCT__ "MatMultAdd_MPIBAIJ" 1151dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPIBAIJ(Mat A,Vec xx,Vec yy,Vec zz) 1152cee3aa6bSSatish Balay { 1153cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1154dfbe8321SBarry Smith PetscErrorCode ierr; 1155d64ed03dSBarry Smith 1156d64ed03dSBarry Smith PetscFunctionBegin; 1157ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1158f830108cSBarry Smith ierr = (*a->A->ops->multadd)(a->A,xx,yy,zz);CHKERRQ(ierr); 1159ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1160f830108cSBarry Smith ierr = (*a->B->ops->multadd)(a->B,a->lvec,zz,zz);CHKERRQ(ierr); 11613a40ed3dSBarry Smith PetscFunctionReturn(0); 1162cee3aa6bSSatish Balay } 1163cee3aa6bSSatish Balay 11644a2ae208SSatish Balay #undef __FUNCT__ 11654a2ae208SSatish Balay #define __FUNCT__ "MatMultTranspose_MPIBAIJ" 1166dfbe8321SBarry Smith PetscErrorCode MatMultTranspose_MPIBAIJ(Mat A,Vec xx,Vec yy) 1167cee3aa6bSSatish Balay { 1168cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1169dfbe8321SBarry Smith PetscErrorCode ierr; 1170a5ff213dSBarry Smith PetscTruth merged; 1171cee3aa6bSSatish Balay 1172d64ed03dSBarry Smith PetscFunctionBegin; 1173a5ff213dSBarry Smith ierr = VecScatterGetMerged(a->Mvctx,&merged);CHKERRQ(ierr); 1174cee3aa6bSSatish Balay /* do nondiagonal part */ 11757c922b88SBarry Smith ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr); 1176a5ff213dSBarry Smith if (!merged) { 1177cee3aa6bSSatish Balay /* send it on its way */ 1178ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 1179cee3aa6bSSatish Balay /* do local part */ 11807c922b88SBarry Smith ierr = (*a->A->ops->multtranspose)(a->A,xx,yy);CHKERRQ(ierr); 1181cee3aa6bSSatish Balay /* receive remote parts: note this assumes the values are not actually */ 1182a5ff213dSBarry Smith /* inserted in yy until the next line */ 1183ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 1184a5ff213dSBarry Smith } else { 1185a5ff213dSBarry Smith /* do local part */ 1186a5ff213dSBarry Smith ierr = (*a->A->ops->multtranspose)(a->A,xx,yy);CHKERRQ(ierr); 1187a5ff213dSBarry Smith /* send it on its way */ 1188ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 1189a5ff213dSBarry Smith /* values actually were received in the Begin() but we need to call this nop */ 1190ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 1191a5ff213dSBarry Smith } 11923a40ed3dSBarry Smith PetscFunctionReturn(0); 1193cee3aa6bSSatish Balay } 1194cee3aa6bSSatish Balay 11954a2ae208SSatish Balay #undef __FUNCT__ 11964a2ae208SSatish Balay #define __FUNCT__ "MatMultTransposeAdd_MPIBAIJ" 1197dfbe8321SBarry Smith PetscErrorCode MatMultTransposeAdd_MPIBAIJ(Mat A,Vec xx,Vec yy,Vec zz) 1198cee3aa6bSSatish Balay { 1199cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1200dfbe8321SBarry Smith PetscErrorCode ierr; 1201cee3aa6bSSatish Balay 1202d64ed03dSBarry Smith PetscFunctionBegin; 1203cee3aa6bSSatish Balay /* do nondiagonal part */ 12047c922b88SBarry Smith ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr); 1205cee3aa6bSSatish Balay /* send it on its way */ 1206ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 1207cee3aa6bSSatish Balay /* do local part */ 12087c922b88SBarry Smith ierr = (*a->A->ops->multtransposeadd)(a->A,xx,yy,zz);CHKERRQ(ierr); 1209cee3aa6bSSatish Balay /* receive remote parts: note this assumes the values are not actually */ 1210cee3aa6bSSatish Balay /* inserted in yy until the next line, which is true for my implementation*/ 1211cee3aa6bSSatish Balay /* but is not perhaps always true. */ 1212ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 12133a40ed3dSBarry Smith PetscFunctionReturn(0); 1214cee3aa6bSSatish Balay } 1215cee3aa6bSSatish Balay 1216cee3aa6bSSatish Balay /* 1217cee3aa6bSSatish Balay This only works correctly for square matrices where the subblock A->A is the 1218cee3aa6bSSatish Balay diagonal block 1219cee3aa6bSSatish Balay */ 12204a2ae208SSatish Balay #undef __FUNCT__ 12214a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonal_MPIBAIJ" 1222dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_MPIBAIJ(Mat A,Vec v) 1223cee3aa6bSSatish Balay { 1224cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1225dfbe8321SBarry Smith PetscErrorCode ierr; 1226d64ed03dSBarry Smith 1227d64ed03dSBarry Smith PetscFunctionBegin; 1228e32f2f54SBarry Smith if (A->rmap->N != A->cmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block"); 12293a40ed3dSBarry Smith ierr = MatGetDiagonal(a->A,v);CHKERRQ(ierr); 12303a40ed3dSBarry Smith PetscFunctionReturn(0); 1231cee3aa6bSSatish Balay } 1232cee3aa6bSSatish Balay 12334a2ae208SSatish Balay #undef __FUNCT__ 12344a2ae208SSatish Balay #define __FUNCT__ "MatScale_MPIBAIJ" 1235f4df32b1SMatthew Knepley PetscErrorCode MatScale_MPIBAIJ(Mat A,PetscScalar aa) 1236cee3aa6bSSatish Balay { 1237cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1238dfbe8321SBarry Smith PetscErrorCode ierr; 1239d64ed03dSBarry Smith 1240d64ed03dSBarry Smith PetscFunctionBegin; 1241f4df32b1SMatthew Knepley ierr = MatScale(a->A,aa);CHKERRQ(ierr); 1242f4df32b1SMatthew Knepley ierr = MatScale(a->B,aa);CHKERRQ(ierr); 12433a40ed3dSBarry Smith PetscFunctionReturn(0); 1244cee3aa6bSSatish Balay } 1245026e39d0SSatish Balay 12464a2ae208SSatish Balay #undef __FUNCT__ 12474a2ae208SSatish Balay #define __FUNCT__ "MatGetRow_MPIBAIJ" 1248b24ad042SBarry Smith PetscErrorCode MatGetRow_MPIBAIJ(Mat matin,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 1249acdf5bf4SSatish Balay { 1250acdf5bf4SSatish Balay Mat_MPIBAIJ *mat = (Mat_MPIBAIJ*)matin->data; 125187828ca2SBarry Smith PetscScalar *vworkA,*vworkB,**pvA,**pvB,*v_p; 12526849ba73SBarry Smith PetscErrorCode ierr; 1253d0f46423SBarry Smith PetscInt bs = matin->rmap->bs,bs2 = mat->bs2,i,*cworkA,*cworkB,**pcA,**pcB; 1254d0f46423SBarry Smith PetscInt nztot,nzA,nzB,lrow,brstart = matin->rmap->rstart,brend = matin->rmap->rend; 1255899cda47SBarry Smith PetscInt *cmap,*idx_p,cstart = mat->cstartbs; 1256acdf5bf4SSatish Balay 1257d64ed03dSBarry Smith PetscFunctionBegin; 1258e7e72b3dSBarry Smith if (row < brstart || row >= brend) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local rows"); 1259e32f2f54SBarry Smith if (mat->getrowactive) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Already active"); 1260acdf5bf4SSatish Balay mat->getrowactive = PETSC_TRUE; 1261acdf5bf4SSatish Balay 1262acdf5bf4SSatish Balay if (!mat->rowvalues && (idx || v)) { 1263acdf5bf4SSatish Balay /* 1264acdf5bf4SSatish Balay allocate enough space to hold information from the longest row. 1265acdf5bf4SSatish Balay */ 1266acdf5bf4SSatish Balay Mat_SeqBAIJ *Aa = (Mat_SeqBAIJ*)mat->A->data,*Ba = (Mat_SeqBAIJ*)mat->B->data; 1267b24ad042SBarry Smith PetscInt max = 1,mbs = mat->mbs,tmp; 1268bd16c2feSSatish Balay for (i=0; i<mbs; i++) { 1269acdf5bf4SSatish Balay tmp = Aa->i[i+1] - Aa->i[i] + Ba->i[i+1] - Ba->i[i]; 1270acdf5bf4SSatish Balay if (max < tmp) { max = tmp; } 1271acdf5bf4SSatish Balay } 1272fca92195SBarry Smith ierr = PetscMalloc2(max*bs2,PetscScalar,&mat->rowvalues,max*bs2,PetscInt,&mat->rowindices);CHKERRQ(ierr); 1273acdf5bf4SSatish Balay } 1274d9d09a02SSatish Balay lrow = row - brstart; 1275acdf5bf4SSatish Balay 1276acdf5bf4SSatish Balay pvA = &vworkA; pcA = &cworkA; pvB = &vworkB; pcB = &cworkB; 1277acdf5bf4SSatish Balay if (!v) {pvA = 0; pvB = 0;} 1278acdf5bf4SSatish Balay if (!idx) {pcA = 0; if (!v) pcB = 0;} 1279f830108cSBarry Smith ierr = (*mat->A->ops->getrow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr); 1280f830108cSBarry Smith ierr = (*mat->B->ops->getrow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr); 1281acdf5bf4SSatish Balay nztot = nzA + nzB; 1282acdf5bf4SSatish Balay 1283acdf5bf4SSatish Balay cmap = mat->garray; 1284acdf5bf4SSatish Balay if (v || idx) { 1285acdf5bf4SSatish Balay if (nztot) { 1286acdf5bf4SSatish Balay /* Sort by increasing column numbers, assuming A and B already sorted */ 1287b24ad042SBarry Smith PetscInt imark = -1; 1288acdf5bf4SSatish Balay if (v) { 1289acdf5bf4SSatish Balay *v = v_p = mat->rowvalues; 1290acdf5bf4SSatish Balay for (i=0; i<nzB; i++) { 1291d9d09a02SSatish Balay if (cmap[cworkB[i]/bs] < cstart) v_p[i] = vworkB[i]; 1292acdf5bf4SSatish Balay else break; 1293acdf5bf4SSatish Balay } 1294acdf5bf4SSatish Balay imark = i; 1295acdf5bf4SSatish Balay for (i=0; i<nzA; i++) v_p[imark+i] = vworkA[i]; 1296acdf5bf4SSatish Balay for (i=imark; i<nzB; i++) v_p[nzA+i] = vworkB[i]; 1297acdf5bf4SSatish Balay } 1298acdf5bf4SSatish Balay if (idx) { 1299acdf5bf4SSatish Balay *idx = idx_p = mat->rowindices; 1300acdf5bf4SSatish Balay if (imark > -1) { 1301acdf5bf4SSatish Balay for (i=0; i<imark; i++) { 1302bd16c2feSSatish Balay idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs; 1303acdf5bf4SSatish Balay } 1304acdf5bf4SSatish Balay } else { 1305acdf5bf4SSatish Balay for (i=0; i<nzB; i++) { 1306d9d09a02SSatish Balay if (cmap[cworkB[i]/bs] < cstart) 1307d9d09a02SSatish Balay idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ; 1308acdf5bf4SSatish Balay else break; 1309acdf5bf4SSatish Balay } 1310acdf5bf4SSatish Balay imark = i; 1311acdf5bf4SSatish Balay } 1312d9d09a02SSatish Balay for (i=0; i<nzA; i++) idx_p[imark+i] = cstart*bs + cworkA[i]; 1313d9d09a02SSatish Balay for (i=imark; i<nzB; i++) idx_p[nzA+i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ; 1314acdf5bf4SSatish Balay } 1315d64ed03dSBarry Smith } else { 1316d212a18eSSatish Balay if (idx) *idx = 0; 1317d212a18eSSatish Balay if (v) *v = 0; 1318d212a18eSSatish Balay } 1319acdf5bf4SSatish Balay } 1320acdf5bf4SSatish Balay *nz = nztot; 1321f830108cSBarry Smith ierr = (*mat->A->ops->restorerow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr); 1322f830108cSBarry Smith ierr = (*mat->B->ops->restorerow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr); 13233a40ed3dSBarry Smith PetscFunctionReturn(0); 1324acdf5bf4SSatish Balay } 1325acdf5bf4SSatish Balay 13264a2ae208SSatish Balay #undef __FUNCT__ 13274a2ae208SSatish Balay #define __FUNCT__ "MatRestoreRow_MPIBAIJ" 1328b24ad042SBarry Smith PetscErrorCode MatRestoreRow_MPIBAIJ(Mat mat,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 1329acdf5bf4SSatish Balay { 1330acdf5bf4SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 1331d64ed03dSBarry Smith 1332d64ed03dSBarry Smith PetscFunctionBegin; 1333e7e72b3dSBarry Smith if (!baij->getrowactive) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"MatGetRow not called"); 1334acdf5bf4SSatish Balay baij->getrowactive = PETSC_FALSE; 13353a40ed3dSBarry Smith PetscFunctionReturn(0); 1336acdf5bf4SSatish Balay } 1337acdf5bf4SSatish Balay 13384a2ae208SSatish Balay #undef __FUNCT__ 13394a2ae208SSatish Balay #define __FUNCT__ "MatZeroEntries_MPIBAIJ" 1340dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_MPIBAIJ(Mat A) 134158667388SSatish Balay { 134258667388SSatish Balay Mat_MPIBAIJ *l = (Mat_MPIBAIJ*)A->data; 1343dfbe8321SBarry Smith PetscErrorCode ierr; 1344d64ed03dSBarry Smith 1345d64ed03dSBarry Smith PetscFunctionBegin; 134658667388SSatish Balay ierr = MatZeroEntries(l->A);CHKERRQ(ierr); 134758667388SSatish Balay ierr = MatZeroEntries(l->B);CHKERRQ(ierr); 13483a40ed3dSBarry Smith PetscFunctionReturn(0); 134958667388SSatish Balay } 13500ac07820SSatish Balay 13514a2ae208SSatish Balay #undef __FUNCT__ 13524a2ae208SSatish Balay #define __FUNCT__ "MatGetInfo_MPIBAIJ" 1353dfbe8321SBarry Smith PetscErrorCode MatGetInfo_MPIBAIJ(Mat matin,MatInfoType flag,MatInfo *info) 13540ac07820SSatish Balay { 13554e220ebcSLois Curfman McInnes Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)matin->data; 13564e220ebcSLois Curfman McInnes Mat A = a->A,B = a->B; 1357dfbe8321SBarry Smith PetscErrorCode ierr; 1358329f5518SBarry Smith PetscReal isend[5],irecv[5]; 13590ac07820SSatish Balay 1360d64ed03dSBarry Smith PetscFunctionBegin; 1361d0f46423SBarry Smith info->block_size = (PetscReal)matin->rmap->bs; 13624e220ebcSLois Curfman McInnes ierr = MatGetInfo(A,MAT_LOCAL,info);CHKERRQ(ierr); 13630e4b21beSBarry Smith isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded; 1364de87f314SBarry Smith isend[3] = info->memory; isend[4] = info->mallocs; 13654e220ebcSLois Curfman McInnes ierr = MatGetInfo(B,MAT_LOCAL,info);CHKERRQ(ierr); 13660e4b21beSBarry Smith isend[0] += info->nz_used; isend[1] += info->nz_allocated; isend[2] += info->nz_unneeded; 1367de87f314SBarry Smith isend[3] += info->memory; isend[4] += info->mallocs; 13680ac07820SSatish Balay if (flag == MAT_LOCAL) { 13694e220ebcSLois Curfman McInnes info->nz_used = isend[0]; 13704e220ebcSLois Curfman McInnes info->nz_allocated = isend[1]; 13714e220ebcSLois Curfman McInnes info->nz_unneeded = isend[2]; 13724e220ebcSLois Curfman McInnes info->memory = isend[3]; 13734e220ebcSLois Curfman McInnes info->mallocs = isend[4]; 13740ac07820SSatish Balay } else if (flag == MAT_GLOBAL_MAX) { 13757adad957SLisandro Dalcin ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_MAX,((PetscObject)matin)->comm);CHKERRQ(ierr); 13764e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 13774e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 13784e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 13794e220ebcSLois Curfman McInnes info->memory = irecv[3]; 13804e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 13810ac07820SSatish Balay } else if (flag == MAT_GLOBAL_SUM) { 13827adad957SLisandro Dalcin ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_SUM,((PetscObject)matin)->comm);CHKERRQ(ierr); 13834e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 13844e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 13854e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 13864e220ebcSLois Curfman McInnes info->memory = irecv[3]; 13874e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 1388d41123aaSBarry Smith } else { 138965e19b50SBarry Smith SETERRQ1(((PetscObject)matin)->comm,PETSC_ERR_ARG_WRONG,"Unknown MatInfoType argument %d",(int)flag); 13900ac07820SSatish Balay } 13914e220ebcSLois Curfman McInnes info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */ 13924e220ebcSLois Curfman McInnes info->fill_ratio_needed = 0; 13934e220ebcSLois Curfman McInnes info->factor_mallocs = 0; 13943a40ed3dSBarry Smith PetscFunctionReturn(0); 13950ac07820SSatish Balay } 13960ac07820SSatish Balay 13974a2ae208SSatish Balay #undef __FUNCT__ 13984a2ae208SSatish Balay #define __FUNCT__ "MatSetOption_MPIBAIJ" 13994e0d8c25SBarry Smith PetscErrorCode MatSetOption_MPIBAIJ(Mat A,MatOption op,PetscTruth flg) 140058667388SSatish Balay { 140158667388SSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1402dfbe8321SBarry Smith PetscErrorCode ierr; 140358667388SSatish Balay 1404d64ed03dSBarry Smith PetscFunctionBegin; 140512c028f9SKris Buschelman switch (op) { 1406512a5fc5SBarry Smith case MAT_NEW_NONZERO_LOCATIONS: 140712c028f9SKris Buschelman case MAT_NEW_NONZERO_ALLOCATION_ERR: 140828b2fa4aSMatthew Knepley case MAT_UNUSED_NONZERO_LOCATION_ERR: 1409a9817697SBarry Smith case MAT_KEEP_NONZERO_PATTERN: 141012c028f9SKris Buschelman case MAT_NEW_NONZERO_LOCATION_ERR: 14114e0d8c25SBarry Smith ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 14124e0d8c25SBarry Smith ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr); 141312c028f9SKris Buschelman break; 141412c028f9SKris Buschelman case MAT_ROW_ORIENTED: 14154e0d8c25SBarry Smith a->roworiented = flg; 14164e0d8c25SBarry Smith ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 14174e0d8c25SBarry Smith ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr); 141812c028f9SKris Buschelman break; 14194e0d8c25SBarry Smith case MAT_NEW_DIAGONALS: 1420290bbb0aSBarry Smith ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr); 142112c028f9SKris Buschelman break; 142212c028f9SKris Buschelman case MAT_IGNORE_OFF_PROC_ENTRIES: 14234e0d8c25SBarry Smith a->donotstash = flg; 142412c028f9SKris Buschelman break; 142512c028f9SKris Buschelman case MAT_USE_HASH_TABLE: 14264e0d8c25SBarry Smith a->ht_flag = flg; 142712c028f9SKris Buschelman break; 142877e54ba9SKris Buschelman case MAT_SYMMETRIC: 142977e54ba9SKris Buschelman case MAT_STRUCTURALLY_SYMMETRIC: 14302188ac68SBarry Smith case MAT_HERMITIAN: 14312188ac68SBarry Smith case MAT_SYMMETRY_ETERNAL: 14324e0d8c25SBarry Smith ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 143377e54ba9SKris Buschelman break; 143412c028f9SKris Buschelman default: 143565e19b50SBarry Smith SETERRQ1(((PetscObject)A)->comm,PETSC_ERR_SUP,"unknown option %d",op); 1436d64ed03dSBarry Smith } 14373a40ed3dSBarry Smith PetscFunctionReturn(0); 143858667388SSatish Balay } 143958667388SSatish Balay 14404a2ae208SSatish Balay #undef __FUNCT__ 14414a2ae208SSatish Balay #define __FUNCT__ "MatTranspose_MPIBAIJ(" 1442fc4dec0aSBarry Smith PetscErrorCode MatTranspose_MPIBAIJ(Mat A,MatReuse reuse,Mat *matout) 14430ac07820SSatish Balay { 14440ac07820SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)A->data; 14450ac07820SSatish Balay Mat_SeqBAIJ *Aloc; 14460ac07820SSatish Balay Mat B; 1447dfbe8321SBarry Smith PetscErrorCode ierr; 1448d0f46423SBarry Smith PetscInt M=A->rmap->N,N=A->cmap->N,*ai,*aj,i,*rvals,j,k,col; 1449d0f46423SBarry Smith PetscInt bs=A->rmap->bs,mbs=baij->mbs; 14503eda8832SBarry Smith MatScalar *a; 14510ac07820SSatish Balay 1452d64ed03dSBarry Smith PetscFunctionBegin; 1453e7e72b3dSBarry Smith if (reuse == MAT_REUSE_MATRIX && A == *matout && M != N) SETERRQ(((PetscObject)A)->comm,PETSC_ERR_ARG_SIZ,"Square matrix only for in-place"); 1454fc4dec0aSBarry Smith if (reuse == MAT_INITIAL_MATRIX || *matout == A) { 14557adad957SLisandro Dalcin ierr = MatCreate(((PetscObject)A)->comm,&B);CHKERRQ(ierr); 1456d0f46423SBarry Smith ierr = MatSetSizes(B,A->cmap->n,A->rmap->n,N,M);CHKERRQ(ierr); 14577adad957SLisandro Dalcin ierr = MatSetType(B,((PetscObject)A)->type_name);CHKERRQ(ierr); 1458d0f46423SBarry Smith ierr = MatMPIBAIJSetPreallocation(B,A->rmap->bs,0,PETSC_NULL,0,PETSC_NULL);CHKERRQ(ierr); 1459fc4dec0aSBarry Smith } else { 1460fc4dec0aSBarry Smith B = *matout; 1461fc4dec0aSBarry Smith } 14620ac07820SSatish Balay 14630ac07820SSatish Balay /* copy over the A part */ 14640ac07820SSatish Balay Aloc = (Mat_SeqBAIJ*)baij->A->data; 14650ac07820SSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 1466b24ad042SBarry Smith ierr = PetscMalloc(bs*sizeof(PetscInt),&rvals);CHKERRQ(ierr); 14670ac07820SSatish Balay 14680ac07820SSatish Balay for (i=0; i<mbs; i++) { 1469899cda47SBarry Smith rvals[0] = bs*(baij->rstartbs + i); 14700ac07820SSatish Balay for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; } 14710ac07820SSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 1472899cda47SBarry Smith col = (baij->cstartbs+aj[j])*bs; 14730ac07820SSatish Balay for (k=0; k<bs; k++) { 147497e5c40aSBarry Smith ierr = MatSetValues_MPIBAIJ(B,1,&col,bs,rvals,a,INSERT_VALUES);CHKERRQ(ierr); 14750ac07820SSatish Balay col++; a += bs; 14760ac07820SSatish Balay } 14770ac07820SSatish Balay } 14780ac07820SSatish Balay } 14790ac07820SSatish Balay /* copy over the B part */ 14800ac07820SSatish Balay Aloc = (Mat_SeqBAIJ*)baij->B->data; 14810ac07820SSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 14820ac07820SSatish Balay for (i=0; i<mbs; i++) { 1483899cda47SBarry Smith rvals[0] = bs*(baij->rstartbs + i); 14840ac07820SSatish Balay for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; } 14850ac07820SSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 14860ac07820SSatish Balay col = baij->garray[aj[j]]*bs; 14870ac07820SSatish Balay for (k=0; k<bs; k++) { 148897e5c40aSBarry Smith ierr = MatSetValues_MPIBAIJ(B,1,&col,bs,rvals,a,INSERT_VALUES);CHKERRQ(ierr); 14890ac07820SSatish Balay col++; a += bs; 14900ac07820SSatish Balay } 14910ac07820SSatish Balay } 14920ac07820SSatish Balay } 1493606d414cSSatish Balay ierr = PetscFree(rvals);CHKERRQ(ierr); 14940ac07820SSatish Balay ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 14950ac07820SSatish Balay ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 14960ac07820SSatish Balay 1497815cbec1SBarry Smith if (reuse == MAT_INITIAL_MATRIX || *matout != A) { 14980ac07820SSatish Balay *matout = B; 14990ac07820SSatish Balay } else { 1500eb6b5d47SBarry Smith ierr = MatHeaderMerge(A,B);CHKERRQ(ierr); 15010ac07820SSatish Balay } 15023a40ed3dSBarry Smith PetscFunctionReturn(0); 15030ac07820SSatish Balay } 15040e95ebc0SSatish Balay 15054a2ae208SSatish Balay #undef __FUNCT__ 15064a2ae208SSatish Balay #define __FUNCT__ "MatDiagonalScale_MPIBAIJ" 1507dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_MPIBAIJ(Mat mat,Vec ll,Vec rr) 15080e95ebc0SSatish Balay { 150936c4a09eSSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 151036c4a09eSSatish Balay Mat a = baij->A,b = baij->B; 1511dfbe8321SBarry Smith PetscErrorCode ierr; 1512b24ad042SBarry Smith PetscInt s1,s2,s3; 15130e95ebc0SSatish Balay 1514d64ed03dSBarry Smith PetscFunctionBegin; 151536c4a09eSSatish Balay ierr = MatGetLocalSize(mat,&s2,&s3);CHKERRQ(ierr); 151636c4a09eSSatish Balay if (rr) { 151736c4a09eSSatish Balay ierr = VecGetLocalSize(rr,&s1);CHKERRQ(ierr); 1518e32f2f54SBarry Smith if (s1!=s3) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"right vector non-conforming local size"); 151936c4a09eSSatish Balay /* Overlap communication with computation. */ 1520ca9f406cSSatish Balay ierr = VecScatterBegin(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 152136c4a09eSSatish Balay } 15220e95ebc0SSatish Balay if (ll) { 15230e95ebc0SSatish Balay ierr = VecGetLocalSize(ll,&s1);CHKERRQ(ierr); 1524e32f2f54SBarry Smith if (s1!=s2) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"left vector non-conforming local size"); 1525a21fb8cbSBarry Smith ierr = (*b->ops->diagonalscale)(b,ll,PETSC_NULL);CHKERRQ(ierr); 15260e95ebc0SSatish Balay } 152736c4a09eSSatish Balay /* scale the diagonal block */ 152836c4a09eSSatish Balay ierr = (*a->ops->diagonalscale)(a,ll,rr);CHKERRQ(ierr); 152936c4a09eSSatish Balay 153036c4a09eSSatish Balay if (rr) { 153136c4a09eSSatish Balay /* Do a scatter end and then right scale the off-diagonal block */ 1532ca9f406cSSatish Balay ierr = VecScatterEnd(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1533a21fb8cbSBarry Smith ierr = (*b->ops->diagonalscale)(b,PETSC_NULL,baij->lvec);CHKERRQ(ierr); 153436c4a09eSSatish Balay } 153536c4a09eSSatish Balay 15363a40ed3dSBarry Smith PetscFunctionReturn(0); 15370e95ebc0SSatish Balay } 15380e95ebc0SSatish Balay 15394a2ae208SSatish Balay #undef __FUNCT__ 15404a2ae208SSatish Balay #define __FUNCT__ "MatZeroRows_MPIBAIJ" 1541f4df32b1SMatthew Knepley PetscErrorCode MatZeroRows_MPIBAIJ(Mat A,PetscInt N,const PetscInt rows[],PetscScalar diag) 15420ac07820SSatish Balay { 15430ac07820SSatish Balay Mat_MPIBAIJ *l = (Mat_MPIBAIJ*)A->data; 15446849ba73SBarry Smith PetscErrorCode ierr; 1545b24ad042SBarry Smith PetscMPIInt imdex,size = l->size,n,rank = l->rank; 1546d0f46423SBarry Smith PetscInt i,*owners = A->rmap->range; 1547b24ad042SBarry Smith PetscInt *nprocs,j,idx,nsends,row; 1548b24ad042SBarry Smith PetscInt nmax,*svalues,*starts,*owner,nrecvs; 15497adad957SLisandro Dalcin PetscInt *rvalues,tag = ((PetscObject)A)->tag,count,base,slen,*source,lastidx = -1; 1550d0f46423SBarry Smith PetscInt *lens,*lrows,*values,rstart_bs=A->rmap->rstart; 15517adad957SLisandro Dalcin MPI_Comm comm = ((PetscObject)A)->comm; 15520ac07820SSatish Balay MPI_Request *send_waits,*recv_waits; 15530ac07820SSatish Balay MPI_Status recv_status,*send_status; 15546543fbbaSBarry Smith #if defined(PETSC_DEBUG) 15556543fbbaSBarry Smith PetscTruth found = PETSC_FALSE; 15566543fbbaSBarry Smith #endif 15570ac07820SSatish Balay 1558d64ed03dSBarry Smith PetscFunctionBegin; 15590ac07820SSatish Balay /* first count number of contributors to each processor */ 1560b24ad042SBarry Smith ierr = PetscMalloc(2*size*sizeof(PetscInt),&nprocs);CHKERRQ(ierr); 1561b24ad042SBarry Smith ierr = PetscMemzero(nprocs,2*size*sizeof(PetscInt));CHKERRQ(ierr); 1562b24ad042SBarry Smith ierr = PetscMalloc((N+1)*sizeof(PetscInt),&owner);CHKERRQ(ierr); /* see note*/ 15636543fbbaSBarry Smith j = 0; 15640ac07820SSatish Balay for (i=0; i<N; i++) { 15656543fbbaSBarry Smith if (lastidx > (idx = rows[i])) j = 0; 15666543fbbaSBarry Smith lastidx = idx; 15676543fbbaSBarry Smith for (; j<size; j++) { 1568357c27ecSBarry Smith if (idx >= owners[j] && idx < owners[j+1]) { 15696543fbbaSBarry Smith nprocs[2*j]++; 15706543fbbaSBarry Smith nprocs[2*j+1] = 1; 15716543fbbaSBarry Smith owner[i] = j; 15726543fbbaSBarry Smith #if defined(PETSC_DEBUG) 15736543fbbaSBarry Smith found = PETSC_TRUE; 15746543fbbaSBarry Smith #endif 15756543fbbaSBarry Smith break; 15760ac07820SSatish Balay } 15770ac07820SSatish Balay } 15786543fbbaSBarry Smith #if defined(PETSC_DEBUG) 1579e32f2f54SBarry Smith if (!found) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Index out of range"); 15806543fbbaSBarry Smith found = PETSC_FALSE; 15816543fbbaSBarry Smith #endif 15820ac07820SSatish Balay } 1583c1dc657dSBarry Smith nsends = 0; for (i=0; i<size; i++) { nsends += nprocs[2*i+1];} 15840ac07820SSatish Balay 15850ac07820SSatish Balay /* inform other processors of number of messages and max length*/ 1586c1dc657dSBarry Smith ierr = PetscMaxSum(comm,nprocs,&nmax,&nrecvs);CHKERRQ(ierr); 15870ac07820SSatish Balay 15880ac07820SSatish Balay /* post receives: */ 1589b24ad042SBarry Smith ierr = PetscMalloc((nrecvs+1)*(nmax+1)*sizeof(PetscInt),&rvalues);CHKERRQ(ierr); 1590b0a32e0cSBarry Smith ierr = PetscMalloc((nrecvs+1)*sizeof(MPI_Request),&recv_waits);CHKERRQ(ierr); 15910ac07820SSatish Balay for (i=0; i<nrecvs; i++) { 1592b24ad042SBarry Smith ierr = MPI_Irecv(rvalues+nmax*i,nmax,MPIU_INT,MPI_ANY_SOURCE,tag,comm,recv_waits+i);CHKERRQ(ierr); 15930ac07820SSatish Balay } 15940ac07820SSatish Balay 15950ac07820SSatish Balay /* do sends: 15960ac07820SSatish Balay 1) starts[i] gives the starting index in svalues for stuff going to 15970ac07820SSatish Balay the ith processor 15980ac07820SSatish Balay */ 1599b24ad042SBarry Smith ierr = PetscMalloc((N+1)*sizeof(PetscInt),&svalues);CHKERRQ(ierr); 1600b0a32e0cSBarry Smith ierr = PetscMalloc((nsends+1)*sizeof(MPI_Request),&send_waits);CHKERRQ(ierr); 1601b24ad042SBarry Smith ierr = PetscMalloc((size+1)*sizeof(PetscInt),&starts);CHKERRQ(ierr); 16020ac07820SSatish Balay starts[0] = 0; 1603c1dc657dSBarry Smith for (i=1; i<size; i++) { starts[i] = starts[i-1] + nprocs[2*i-2];} 16040ac07820SSatish Balay for (i=0; i<N; i++) { 16050ac07820SSatish Balay svalues[starts[owner[i]]++] = rows[i]; 16060ac07820SSatish Balay } 16070ac07820SSatish Balay 16080ac07820SSatish Balay starts[0] = 0; 1609c1dc657dSBarry Smith for (i=1; i<size+1; i++) { starts[i] = starts[i-1] + nprocs[2*i-2];} 16100ac07820SSatish Balay count = 0; 16110ac07820SSatish Balay for (i=0; i<size; i++) { 1612c1dc657dSBarry Smith if (nprocs[2*i+1]) { 1613b24ad042SBarry Smith ierr = MPI_Isend(svalues+starts[i],nprocs[2*i],MPIU_INT,i,tag,comm,send_waits+count++);CHKERRQ(ierr); 16140ac07820SSatish Balay } 16150ac07820SSatish Balay } 1616606d414cSSatish Balay ierr = PetscFree(starts);CHKERRQ(ierr); 16170ac07820SSatish Balay 1618357c27ecSBarry Smith base = owners[rank]; 16190ac07820SSatish Balay 16200ac07820SSatish Balay /* wait on receives */ 1621fca92195SBarry Smith ierr = PetscMalloc2(nrecvs+1,PetscInt,&lens,nrecvs+1,PetscInt,&source);CHKERRQ(ierr); 1622fca92195SBarry Smith count = nrecvs; 1623fca92195SBarry Smith slen = 0; 16240ac07820SSatish Balay while (count) { 1625ca161407SBarry Smith ierr = MPI_Waitany(nrecvs,recv_waits,&imdex,&recv_status);CHKERRQ(ierr); 16260ac07820SSatish Balay /* unpack receives into our local space */ 1627b24ad042SBarry Smith ierr = MPI_Get_count(&recv_status,MPIU_INT,&n);CHKERRQ(ierr); 16280ac07820SSatish Balay source[imdex] = recv_status.MPI_SOURCE; 16290ac07820SSatish Balay lens[imdex] = n; 16300ac07820SSatish Balay slen += n; 16310ac07820SSatish Balay count--; 16320ac07820SSatish Balay } 1633606d414cSSatish Balay ierr = PetscFree(recv_waits);CHKERRQ(ierr); 16340ac07820SSatish Balay 16350ac07820SSatish Balay /* move the data into the send scatter */ 1636b24ad042SBarry Smith ierr = PetscMalloc((slen+1)*sizeof(PetscInt),&lrows);CHKERRQ(ierr); 16370ac07820SSatish Balay count = 0; 16380ac07820SSatish Balay for (i=0; i<nrecvs; i++) { 16390ac07820SSatish Balay values = rvalues + i*nmax; 16400ac07820SSatish Balay for (j=0; j<lens[i]; j++) { 16410ac07820SSatish Balay lrows[count++] = values[j] - base; 16420ac07820SSatish Balay } 16430ac07820SSatish Balay } 1644606d414cSSatish Balay ierr = PetscFree(rvalues);CHKERRQ(ierr); 1645fca92195SBarry Smith ierr = PetscFree2(lens,source);CHKERRQ(ierr); 1646606d414cSSatish Balay ierr = PetscFree(owner);CHKERRQ(ierr); 1647606d414cSSatish Balay ierr = PetscFree(nprocs);CHKERRQ(ierr); 16480ac07820SSatish Balay 16490ac07820SSatish Balay /* actually zap the local rows */ 165072dacd9aSBarry Smith /* 165172dacd9aSBarry Smith Zero the required rows. If the "diagonal block" of the matrix 1652a8c7a070SBarry Smith is square and the user wishes to set the diagonal we use separate 165372dacd9aSBarry Smith code so that MatSetValues() is not called for each diagonal allocating 165472dacd9aSBarry Smith new memory, thus calling lots of mallocs and slowing things down. 165572dacd9aSBarry Smith 165672dacd9aSBarry Smith */ 16579c957beeSSatish Balay /* must zero l->B before l->A because the (diag) case below may put values into l->B*/ 1658f4df32b1SMatthew Knepley ierr = MatZeroRows_SeqBAIJ(l->B,slen,lrows,0.0);CHKERRQ(ierr); 1659d0f46423SBarry Smith if ((diag != 0.0) && (l->A->rmap->N == l->A->cmap->N)) { 1660f4df32b1SMatthew Knepley ierr = MatZeroRows_SeqBAIJ(l->A,slen,lrows,diag);CHKERRQ(ierr); 1661f4df32b1SMatthew Knepley } else if (diag != 0.0) { 1662f4df32b1SMatthew Knepley ierr = MatZeroRows_SeqBAIJ(l->A,slen,lrows,0.0);CHKERRQ(ierr); 1663e7e72b3dSBarry Smith if (((Mat_SeqBAIJ*)l->A->data)->nonew) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"MatZeroRows() on rectangular matrices cannot be used with the Mat options \n\ 1664512a5fc5SBarry Smith MAT_NEW_NONZERO_LOCATIONS,MAT_NEW_NONZERO_LOCATION_ERR,MAT_NEW_NONZERO_ALLOCATION_ERR"); 1665a07cd24cSSatish Balay for (i=0; i<slen; i++) { 1666a07cd24cSSatish Balay row = lrows[i] + rstart_bs; 1667f4df32b1SMatthew Knepley ierr = MatSetValues(A,1,&row,1,&row,&diag,INSERT_VALUES);CHKERRQ(ierr); 1668a07cd24cSSatish Balay } 1669a07cd24cSSatish Balay ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 1670a07cd24cSSatish Balay ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 16719c957beeSSatish Balay } else { 1672f4df32b1SMatthew Knepley ierr = MatZeroRows_SeqBAIJ(l->A,slen,lrows,0.0);CHKERRQ(ierr); 1673a07cd24cSSatish Balay } 16749c957beeSSatish Balay 1675606d414cSSatish Balay ierr = PetscFree(lrows);CHKERRQ(ierr); 1676a07cd24cSSatish Balay 16770ac07820SSatish Balay /* wait on sends */ 16780ac07820SSatish Balay if (nsends) { 167982502324SSatish Balay ierr = PetscMalloc(nsends*sizeof(MPI_Status),&send_status);CHKERRQ(ierr); 1680ca161407SBarry Smith ierr = MPI_Waitall(nsends,send_waits,send_status);CHKERRQ(ierr); 1681606d414cSSatish Balay ierr = PetscFree(send_status);CHKERRQ(ierr); 16820ac07820SSatish Balay } 1683606d414cSSatish Balay ierr = PetscFree(send_waits);CHKERRQ(ierr); 1684606d414cSSatish Balay ierr = PetscFree(svalues);CHKERRQ(ierr); 16850ac07820SSatish Balay 16863a40ed3dSBarry Smith PetscFunctionReturn(0); 16870ac07820SSatish Balay } 168872dacd9aSBarry Smith 16894a2ae208SSatish Balay #undef __FUNCT__ 16904a2ae208SSatish Balay #define __FUNCT__ "MatSetUnfactored_MPIBAIJ" 1691dfbe8321SBarry Smith PetscErrorCode MatSetUnfactored_MPIBAIJ(Mat A) 1692bb5a7306SBarry Smith { 1693bb5a7306SBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1694dfbe8321SBarry Smith PetscErrorCode ierr; 1695d64ed03dSBarry Smith 1696d64ed03dSBarry Smith PetscFunctionBegin; 1697bb5a7306SBarry Smith ierr = MatSetUnfactored(a->A);CHKERRQ(ierr); 16983a40ed3dSBarry Smith PetscFunctionReturn(0); 1699bb5a7306SBarry Smith } 1700bb5a7306SBarry Smith 17016849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIBAIJ(Mat,MatDuplicateOption,Mat *); 17020ac07820SSatish Balay 17034a2ae208SSatish Balay #undef __FUNCT__ 17044a2ae208SSatish Balay #define __FUNCT__ "MatEqual_MPIBAIJ" 1705dfbe8321SBarry Smith PetscErrorCode MatEqual_MPIBAIJ(Mat A,Mat B,PetscTruth *flag) 17067fc3c18eSBarry Smith { 17077fc3c18eSBarry Smith Mat_MPIBAIJ *matB = (Mat_MPIBAIJ*)B->data,*matA = (Mat_MPIBAIJ*)A->data; 17087fc3c18eSBarry Smith Mat a,b,c,d; 17097fc3c18eSBarry Smith PetscTruth flg; 1710dfbe8321SBarry Smith PetscErrorCode ierr; 17117fc3c18eSBarry Smith 17127fc3c18eSBarry Smith PetscFunctionBegin; 17137fc3c18eSBarry Smith a = matA->A; b = matA->B; 17147fc3c18eSBarry Smith c = matB->A; d = matB->B; 17157fc3c18eSBarry Smith 17167fc3c18eSBarry Smith ierr = MatEqual(a,c,&flg);CHKERRQ(ierr); 1717abc0a331SBarry Smith if (flg) { 17187fc3c18eSBarry Smith ierr = MatEqual(b,d,&flg);CHKERRQ(ierr); 17197fc3c18eSBarry Smith } 17207adad957SLisandro Dalcin ierr = MPI_Allreduce(&flg,flag,1,MPI_INT,MPI_LAND,((PetscObject)A)->comm);CHKERRQ(ierr); 17217fc3c18eSBarry Smith PetscFunctionReturn(0); 17227fc3c18eSBarry Smith } 17237fc3c18eSBarry Smith 17243c896bc6SHong Zhang #undef __FUNCT__ 17253c896bc6SHong Zhang #define __FUNCT__ "MatCopy_MPIBAIJ" 17263c896bc6SHong Zhang PetscErrorCode MatCopy_MPIBAIJ(Mat A,Mat B,MatStructure str) 17273c896bc6SHong Zhang { 17283c896bc6SHong Zhang PetscErrorCode ierr; 17293c896bc6SHong Zhang Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 17303c896bc6SHong Zhang Mat_MPIBAIJ *b = (Mat_MPIBAIJ *)B->data; 17313c896bc6SHong Zhang 17323c896bc6SHong Zhang PetscFunctionBegin; 17333c896bc6SHong Zhang /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */ 17343c896bc6SHong Zhang if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) { 17353c896bc6SHong Zhang ierr = MatCopy_Basic(A,B,str);CHKERRQ(ierr); 17363c896bc6SHong Zhang } else { 17373c896bc6SHong Zhang ierr = MatCopy(a->A,b->A,str);CHKERRQ(ierr); 17383c896bc6SHong Zhang ierr = MatCopy(a->B,b->B,str);CHKERRQ(ierr); 17393c896bc6SHong Zhang } 17403c896bc6SHong Zhang PetscFunctionReturn(0); 17413c896bc6SHong Zhang } 1742273d9f13SBarry Smith 17434a2ae208SSatish Balay #undef __FUNCT__ 17444a2ae208SSatish Balay #define __FUNCT__ "MatSetUpPreallocation_MPIBAIJ" 1745dfbe8321SBarry Smith PetscErrorCode MatSetUpPreallocation_MPIBAIJ(Mat A) 1746273d9f13SBarry Smith { 1747dfbe8321SBarry Smith PetscErrorCode ierr; 1748273d9f13SBarry Smith 1749273d9f13SBarry Smith PetscFunctionBegin; 1750db4efbfdSBarry Smith ierr = MatMPIBAIJSetPreallocation(A,-PetscMax(A->rmap->bs,1),PETSC_DEFAULT,0,PETSC_DEFAULT,0);CHKERRQ(ierr); 1751273d9f13SBarry Smith PetscFunctionReturn(0); 1752273d9f13SBarry Smith } 1753273d9f13SBarry Smith 17544fe895cdSHong Zhang #undef __FUNCT__ 17554fe895cdSHong Zhang #define __FUNCT__ "MatAXPY_MPIBAIJ" 17564fe895cdSHong Zhang PetscErrorCode MatAXPY_MPIBAIJ(Mat Y,PetscScalar a,Mat X,MatStructure str) 17574fe895cdSHong Zhang { 17584fe895cdSHong Zhang PetscErrorCode ierr; 17594fe895cdSHong Zhang Mat_MPIBAIJ *xx=(Mat_MPIBAIJ *)X->data,*yy=(Mat_MPIBAIJ *)Y->data; 17604fe895cdSHong Zhang PetscBLASInt bnz,one=1; 17614fe895cdSHong Zhang Mat_SeqBAIJ *x,*y; 17624fe895cdSHong Zhang 17634fe895cdSHong Zhang PetscFunctionBegin; 17644fe895cdSHong Zhang if (str == SAME_NONZERO_PATTERN) { 17654fe895cdSHong Zhang PetscScalar alpha = a; 17664fe895cdSHong Zhang x = (Mat_SeqBAIJ *)xx->A->data; 17674fe895cdSHong Zhang y = (Mat_SeqBAIJ *)yy->A->data; 17680805154bSBarry Smith bnz = PetscBLASIntCast(x->nz); 17694fe895cdSHong Zhang BLASaxpy_(&bnz,&alpha,x->a,&one,y->a,&one); 17704fe895cdSHong Zhang x = (Mat_SeqBAIJ *)xx->B->data; 17714fe895cdSHong Zhang y = (Mat_SeqBAIJ *)yy->B->data; 17720805154bSBarry Smith bnz = PetscBLASIntCast(x->nz); 17734fe895cdSHong Zhang BLASaxpy_(&bnz,&alpha,x->a,&one,y->a,&one); 17744fe895cdSHong Zhang } else { 17754fe895cdSHong Zhang ierr = MatAXPY_Basic(Y,a,X,str);CHKERRQ(ierr); 17764fe895cdSHong Zhang } 17774fe895cdSHong Zhang PetscFunctionReturn(0); 17784fe895cdSHong Zhang } 17794fe895cdSHong Zhang 178099cafbc1SBarry Smith #undef __FUNCT__ 178141c166b1SJed Brown #define __FUNCT__ "MatSetBlockSize_MPIBAIJ" 178241c166b1SJed Brown PetscErrorCode MatSetBlockSize_MPIBAIJ(Mat A,PetscInt bs) 178341c166b1SJed Brown { 178441c166b1SJed Brown Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1785829b6ff0SJed Brown PetscInt rbs,cbs; 178641c166b1SJed Brown PetscErrorCode ierr; 178741c166b1SJed Brown 178841c166b1SJed Brown PetscFunctionBegin; 178941c166b1SJed Brown ierr = MatSetBlockSize(a->A,bs);CHKERRQ(ierr); 179041c166b1SJed Brown ierr = MatSetBlockSize(a->B,bs);CHKERRQ(ierr); 1791829b6ff0SJed Brown ierr = PetscLayoutGetBlockSize(A->rmap,&rbs);CHKERRQ(ierr); 1792829b6ff0SJed Brown ierr = PetscLayoutGetBlockSize(A->cmap,&cbs);CHKERRQ(ierr); 1793e32f2f54SBarry Smith if (rbs != bs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Attempt to set block size %d with BAIJ %d",bs,rbs); 1794e32f2f54SBarry Smith if (cbs != bs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Attempt to set block size %d with BAIJ %d",bs,cbs); 179541c166b1SJed Brown PetscFunctionReturn(0); 179641c166b1SJed Brown } 179741c166b1SJed Brown 179841c166b1SJed Brown #undef __FUNCT__ 179999cafbc1SBarry Smith #define __FUNCT__ "MatRealPart_MPIBAIJ" 180099cafbc1SBarry Smith PetscErrorCode MatRealPart_MPIBAIJ(Mat A) 180199cafbc1SBarry Smith { 180299cafbc1SBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 180399cafbc1SBarry Smith PetscErrorCode ierr; 180499cafbc1SBarry Smith 180599cafbc1SBarry Smith PetscFunctionBegin; 180699cafbc1SBarry Smith ierr = MatRealPart(a->A);CHKERRQ(ierr); 180799cafbc1SBarry Smith ierr = MatRealPart(a->B);CHKERRQ(ierr); 180899cafbc1SBarry Smith PetscFunctionReturn(0); 180999cafbc1SBarry Smith } 181099cafbc1SBarry Smith 181199cafbc1SBarry Smith #undef __FUNCT__ 181299cafbc1SBarry Smith #define __FUNCT__ "MatImaginaryPart_MPIBAIJ" 181399cafbc1SBarry Smith PetscErrorCode MatImaginaryPart_MPIBAIJ(Mat A) 181499cafbc1SBarry Smith { 181599cafbc1SBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 181699cafbc1SBarry Smith PetscErrorCode ierr; 181799cafbc1SBarry Smith 181899cafbc1SBarry Smith PetscFunctionBegin; 181999cafbc1SBarry Smith ierr = MatImaginaryPart(a->A);CHKERRQ(ierr); 182099cafbc1SBarry Smith ierr = MatImaginaryPart(a->B);CHKERRQ(ierr); 182199cafbc1SBarry Smith PetscFunctionReturn(0); 182299cafbc1SBarry Smith } 182399cafbc1SBarry Smith 182482094794SBarry Smith #undef __FUNCT__ 182582094794SBarry Smith #define __FUNCT__ "MatGetSubMatrix_MPIBAIJ" 18264aa3045dSJed Brown PetscErrorCode MatGetSubMatrix_MPIBAIJ(Mat mat,IS isrow,IS iscol,MatReuse call,Mat *newmat) 18274aa3045dSJed Brown { 18284aa3045dSJed Brown PetscErrorCode ierr; 18294aa3045dSJed Brown IS iscol_local; 18304aa3045dSJed Brown PetscInt csize; 18314aa3045dSJed Brown 18324aa3045dSJed Brown PetscFunctionBegin; 18334aa3045dSJed Brown ierr = ISGetLocalSize(iscol,&csize);CHKERRQ(ierr); 1834b79d0421SJed Brown if (call == MAT_REUSE_MATRIX) { 1835b79d0421SJed Brown ierr = PetscObjectQuery((PetscObject)*newmat,"ISAllGather",(PetscObject*)&iscol_local);CHKERRQ(ierr); 1836e32f2f54SBarry Smith if (!iscol_local) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Submatrix passed in was not used before, cannot reuse"); 1837b79d0421SJed Brown } else { 18384aa3045dSJed Brown ierr = ISAllGather(iscol,&iscol_local);CHKERRQ(ierr); 1839b79d0421SJed Brown } 18404aa3045dSJed Brown ierr = MatGetSubMatrix_MPIBAIJ_Private(mat,isrow,iscol_local,csize,call,newmat);CHKERRQ(ierr); 1841b79d0421SJed Brown if (call == MAT_INITIAL_MATRIX) { 1842b79d0421SJed Brown ierr = PetscObjectCompose((PetscObject)*newmat,"ISAllGather",(PetscObject)iscol_local);CHKERRQ(ierr); 18434aa3045dSJed Brown ierr = ISDestroy(iscol_local);CHKERRQ(ierr); 1844b79d0421SJed Brown } 18454aa3045dSJed Brown PetscFunctionReturn(0); 18464aa3045dSJed Brown } 18474aa3045dSJed Brown 18484aa3045dSJed Brown #undef __FUNCT__ 18494aa3045dSJed Brown #define __FUNCT__ "MatGetSubMatrix_MPIBAIJ" 185082094794SBarry Smith /* 185182094794SBarry Smith Not great since it makes two copies of the submatrix, first an SeqBAIJ 185282094794SBarry Smith in local and then by concatenating the local matrices the end result. 185382094794SBarry Smith Writing it directly would be much like MatGetSubMatrices_MPIBAIJ() 185482094794SBarry Smith */ 18554aa3045dSJed Brown PetscErrorCode MatGetSubMatrix_MPIBAIJ_Private(Mat mat,IS isrow,IS iscol,PetscInt csize,MatReuse call,Mat *newmat) 185682094794SBarry Smith { 185782094794SBarry Smith PetscErrorCode ierr; 185882094794SBarry Smith PetscMPIInt rank,size; 185982094794SBarry Smith PetscInt i,m,n,rstart,row,rend,nz,*cwork,j,bs; 186082094794SBarry Smith PetscInt *ii,*jj,nlocal,*dlens,*olens,dlen,olen,jend,mglobal; 186182094794SBarry Smith Mat *local,M,Mreuse; 186282094794SBarry Smith MatScalar *vwork,*aa; 186382094794SBarry Smith MPI_Comm comm = ((PetscObject)mat)->comm; 186482094794SBarry Smith Mat_SeqBAIJ *aij; 186582094794SBarry Smith 186682094794SBarry Smith 186782094794SBarry Smith PetscFunctionBegin; 186882094794SBarry Smith ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 186982094794SBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 187082094794SBarry Smith 187182094794SBarry Smith if (call == MAT_REUSE_MATRIX) { 187282094794SBarry Smith ierr = PetscObjectQuery((PetscObject)*newmat,"SubMatrix",(PetscObject *)&Mreuse);CHKERRQ(ierr); 1873e32f2f54SBarry Smith if (!Mreuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Submatrix passed in was not used before, cannot reuse"); 187482094794SBarry Smith local = &Mreuse; 187582094794SBarry Smith ierr = MatGetSubMatrices(mat,1,&isrow,&iscol,MAT_REUSE_MATRIX,&local);CHKERRQ(ierr); 187682094794SBarry Smith } else { 187782094794SBarry Smith ierr = MatGetSubMatrices(mat,1,&isrow,&iscol,MAT_INITIAL_MATRIX,&local);CHKERRQ(ierr); 187882094794SBarry Smith Mreuse = *local; 187982094794SBarry Smith ierr = PetscFree(local);CHKERRQ(ierr); 188082094794SBarry Smith } 188182094794SBarry Smith 188282094794SBarry Smith /* 188382094794SBarry Smith m - number of local rows 188482094794SBarry Smith n - number of columns (same on all processors) 188582094794SBarry Smith rstart - first row in new global matrix generated 188682094794SBarry Smith */ 188782094794SBarry Smith ierr = MatGetBlockSize(mat,&bs);CHKERRQ(ierr); 188882094794SBarry Smith ierr = MatGetSize(Mreuse,&m,&n);CHKERRQ(ierr); 188982094794SBarry Smith m = m/bs; 189082094794SBarry Smith n = n/bs; 189182094794SBarry Smith 189282094794SBarry Smith if (call == MAT_INITIAL_MATRIX) { 189382094794SBarry Smith aij = (Mat_SeqBAIJ*)(Mreuse)->data; 189482094794SBarry Smith ii = aij->i; 189582094794SBarry Smith jj = aij->j; 189682094794SBarry Smith 189782094794SBarry Smith /* 189882094794SBarry Smith Determine the number of non-zeros in the diagonal and off-diagonal 189982094794SBarry Smith portions of the matrix in order to do correct preallocation 190082094794SBarry Smith */ 190182094794SBarry Smith 190282094794SBarry Smith /* first get start and end of "diagonal" columns */ 190382094794SBarry Smith if (csize == PETSC_DECIDE) { 190482094794SBarry Smith ierr = ISGetSize(isrow,&mglobal);CHKERRQ(ierr); 190582094794SBarry Smith if (mglobal == n*bs) { /* square matrix */ 190682094794SBarry Smith nlocal = m; 190782094794SBarry Smith } else { 190882094794SBarry Smith nlocal = n/size + ((n % size) > rank); 190982094794SBarry Smith } 191082094794SBarry Smith } else { 191182094794SBarry Smith nlocal = csize/bs; 191282094794SBarry Smith } 191382094794SBarry Smith ierr = MPI_Scan(&nlocal,&rend,1,MPIU_INT,MPI_SUM,comm);CHKERRQ(ierr); 191482094794SBarry Smith rstart = rend - nlocal; 191565e19b50SBarry Smith if (rank == size - 1 && rend != n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Local column sizes %D do not add up to total number of columns %D",rend,n); 191682094794SBarry Smith 191782094794SBarry Smith /* next, compute all the lengths */ 191882094794SBarry Smith ierr = PetscMalloc((2*m+1)*sizeof(PetscInt),&dlens);CHKERRQ(ierr); 191982094794SBarry Smith olens = dlens + m; 192082094794SBarry Smith for (i=0; i<m; i++) { 192182094794SBarry Smith jend = ii[i+1] - ii[i]; 192282094794SBarry Smith olen = 0; 192382094794SBarry Smith dlen = 0; 192482094794SBarry Smith for (j=0; j<jend; j++) { 192582094794SBarry Smith if (*jj < rstart || *jj >= rend) olen++; 192682094794SBarry Smith else dlen++; 192782094794SBarry Smith jj++; 192882094794SBarry Smith } 192982094794SBarry Smith olens[i] = olen; 193082094794SBarry Smith dlens[i] = dlen; 193182094794SBarry Smith } 193282094794SBarry Smith ierr = MatCreate(comm,&M);CHKERRQ(ierr); 193382094794SBarry Smith ierr = MatSetSizes(M,bs*m,bs*nlocal,PETSC_DECIDE,bs*n);CHKERRQ(ierr); 193482094794SBarry Smith ierr = MatSetType(M,((PetscObject)mat)->type_name);CHKERRQ(ierr); 193582094794SBarry Smith ierr = MatMPIBAIJSetPreallocation(M,bs,0,dlens,0,olens);CHKERRQ(ierr); 193682094794SBarry Smith ierr = PetscFree(dlens);CHKERRQ(ierr); 193782094794SBarry Smith } else { 193882094794SBarry Smith PetscInt ml,nl; 193982094794SBarry Smith 194082094794SBarry Smith M = *newmat; 194182094794SBarry Smith ierr = MatGetLocalSize(M,&ml,&nl);CHKERRQ(ierr); 1942e32f2f54SBarry Smith if (ml != m) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Previous matrix must be same size/layout as request"); 194382094794SBarry Smith ierr = MatZeroEntries(M);CHKERRQ(ierr); 194482094794SBarry Smith /* 194582094794SBarry Smith The next two lines are needed so we may call MatSetValues_MPIAIJ() below directly, 194682094794SBarry Smith rather than the slower MatSetValues(). 194782094794SBarry Smith */ 194882094794SBarry Smith M->was_assembled = PETSC_TRUE; 194982094794SBarry Smith M->assembled = PETSC_FALSE; 195082094794SBarry Smith } 195182094794SBarry Smith ierr = MatSetOption(M,MAT_ROW_ORIENTED,PETSC_FALSE);CHKERRQ(ierr); 195282094794SBarry Smith ierr = MatGetOwnershipRange(M,&rstart,&rend);CHKERRQ(ierr); 195382094794SBarry Smith aij = (Mat_SeqBAIJ*)(Mreuse)->data; 195482094794SBarry Smith ii = aij->i; 195582094794SBarry Smith jj = aij->j; 195682094794SBarry Smith aa = aij->a; 195782094794SBarry Smith for (i=0; i<m; i++) { 195882094794SBarry Smith row = rstart/bs + i; 195982094794SBarry Smith nz = ii[i+1] - ii[i]; 196082094794SBarry Smith cwork = jj; jj += nz; 196182094794SBarry Smith vwork = aa; aa += nz; 196282094794SBarry Smith ierr = MatSetValuesBlocked_MPIBAIJ(M,1,&row,nz,cwork,vwork,INSERT_VALUES);CHKERRQ(ierr); 196382094794SBarry Smith } 196482094794SBarry Smith 196582094794SBarry Smith ierr = MatAssemblyBegin(M,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 196682094794SBarry Smith ierr = MatAssemblyEnd(M,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 196782094794SBarry Smith *newmat = M; 196882094794SBarry Smith 196982094794SBarry Smith /* save submatrix used in processor for next request */ 197082094794SBarry Smith if (call == MAT_INITIAL_MATRIX) { 197182094794SBarry Smith ierr = PetscObjectCompose((PetscObject)M,"SubMatrix",(PetscObject)Mreuse);CHKERRQ(ierr); 197282094794SBarry Smith ierr = PetscObjectDereference((PetscObject)Mreuse);CHKERRQ(ierr); 197382094794SBarry Smith } 197482094794SBarry Smith 197582094794SBarry Smith PetscFunctionReturn(0); 197682094794SBarry Smith } 197782094794SBarry Smith 197882094794SBarry Smith #undef __FUNCT__ 197982094794SBarry Smith #define __FUNCT__ "MatPermute_MPIBAIJ" 198082094794SBarry Smith PetscErrorCode MatPermute_MPIBAIJ(Mat A,IS rowp,IS colp,Mat *B) 198182094794SBarry Smith { 198282094794SBarry Smith MPI_Comm comm,pcomm; 198382094794SBarry Smith PetscInt first,local_size,nrows; 198482094794SBarry Smith const PetscInt *rows; 1985dbf0e21dSBarry Smith PetscMPIInt size; 198682094794SBarry Smith IS crowp,growp,irowp,lrowp,lcolp,icolp; 198782094794SBarry Smith PetscErrorCode ierr; 198882094794SBarry Smith 198982094794SBarry Smith PetscFunctionBegin; 199082094794SBarry Smith ierr = PetscObjectGetComm((PetscObject)A,&comm);CHKERRQ(ierr); 199182094794SBarry Smith /* make a collective version of 'rowp' */ 199282094794SBarry Smith ierr = PetscObjectGetComm((PetscObject)rowp,&pcomm);CHKERRQ(ierr); 199382094794SBarry Smith if (pcomm==comm) { 199482094794SBarry Smith crowp = rowp; 199582094794SBarry Smith } else { 199682094794SBarry Smith ierr = ISGetSize(rowp,&nrows);CHKERRQ(ierr); 199782094794SBarry Smith ierr = ISGetIndices(rowp,&rows);CHKERRQ(ierr); 199882094794SBarry Smith ierr = ISCreateGeneral(comm,nrows,rows,&crowp);CHKERRQ(ierr); 199982094794SBarry Smith ierr = ISRestoreIndices(rowp,&rows);CHKERRQ(ierr); 200082094794SBarry Smith } 200182094794SBarry Smith /* collect the global row permutation and invert it */ 200282094794SBarry Smith ierr = ISAllGather(crowp,&growp);CHKERRQ(ierr); 200382094794SBarry Smith ierr = ISSetPermutation(growp);CHKERRQ(ierr); 200482094794SBarry Smith if (pcomm!=comm) { 200582094794SBarry Smith ierr = ISDestroy(crowp);CHKERRQ(ierr); 200682094794SBarry Smith } 200782094794SBarry Smith ierr = ISInvertPermutation(growp,PETSC_DECIDE,&irowp);CHKERRQ(ierr); 200882094794SBarry Smith /* get the local target indices */ 200982094794SBarry Smith ierr = MatGetOwnershipRange(A,&first,PETSC_NULL);CHKERRQ(ierr); 201082094794SBarry Smith ierr = MatGetLocalSize(A,&local_size,PETSC_NULL);CHKERRQ(ierr); 201182094794SBarry Smith ierr = ISGetIndices(irowp,&rows);CHKERRQ(ierr); 201282094794SBarry Smith ierr = ISCreateGeneral(MPI_COMM_SELF,local_size,rows+first,&lrowp);CHKERRQ(ierr); 201382094794SBarry Smith ierr = ISRestoreIndices(irowp,&rows);CHKERRQ(ierr); 201482094794SBarry Smith ierr = ISDestroy(irowp);CHKERRQ(ierr); 201582094794SBarry Smith /* the column permutation is so much easier; 201682094794SBarry Smith make a local version of 'colp' and invert it */ 201782094794SBarry Smith ierr = PetscObjectGetComm((PetscObject)colp,&pcomm);CHKERRQ(ierr); 2018dbf0e21dSBarry Smith ierr = MPI_Comm_size(pcomm,&size);CHKERRQ(ierr); 2019dbf0e21dSBarry Smith if (size==1) { 202082094794SBarry Smith lcolp = colp; 202182094794SBarry Smith } else { 202282094794SBarry Smith ierr = ISGetSize(colp,&nrows);CHKERRQ(ierr); 202382094794SBarry Smith ierr = ISGetIndices(colp,&rows);CHKERRQ(ierr); 202482094794SBarry Smith ierr = ISCreateGeneral(MPI_COMM_SELF,nrows,rows,&lcolp);CHKERRQ(ierr); 202582094794SBarry Smith } 2026dbf0e21dSBarry Smith ierr = ISSetPermutation(lcolp);CHKERRQ(ierr); 202782094794SBarry Smith ierr = ISInvertPermutation(lcolp,PETSC_DECIDE,&icolp);CHKERRQ(ierr); 20284aa3045dSJed Brown ierr = ISSetPermutation(icolp);CHKERRQ(ierr); 2029dbf0e21dSBarry Smith if (size>1) { 203082094794SBarry Smith ierr = ISRestoreIndices(colp,&rows);CHKERRQ(ierr); 203182094794SBarry Smith ierr = ISDestroy(lcolp);CHKERRQ(ierr); 203282094794SBarry Smith } 203382094794SBarry Smith /* now we just get the submatrix */ 20344aa3045dSJed Brown ierr = MatGetSubMatrix_MPIBAIJ_Private(A,lrowp,icolp,local_size,MAT_INITIAL_MATRIX,B);CHKERRQ(ierr); 203582094794SBarry Smith /* clean up */ 203682094794SBarry Smith ierr = ISDestroy(lrowp);CHKERRQ(ierr); 203782094794SBarry Smith ierr = ISDestroy(icolp);CHKERRQ(ierr); 203882094794SBarry Smith PetscFunctionReturn(0); 203982094794SBarry Smith } 204082094794SBarry Smith 20418c7482ecSBarry Smith #undef __FUNCT__ 20428c7482ecSBarry Smith #define __FUNCT__ "MatGetGhosts_MPIBAIJ" 20438c7482ecSBarry Smith PetscErrorCode PETSCMAT_DLLEXPORT MatGetGhosts_MPIBAIJ(Mat mat,PetscInt *nghosts,const PetscInt *ghosts[]) 20448c7482ecSBarry Smith { 20458c7482ecSBarry Smith Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*) mat->data; 20468c7482ecSBarry Smith Mat_SeqBAIJ *B = (Mat_SeqBAIJ*)baij->B->data; 20478c7482ecSBarry Smith 20488c7482ecSBarry Smith PetscFunctionBegin; 20498c7482ecSBarry Smith if (nghosts) { *nghosts = B->nbs;} 20508c7482ecSBarry Smith if (ghosts) {*ghosts = baij->garray;} 20518c7482ecSBarry Smith PetscFunctionReturn(0); 20528c7482ecSBarry Smith } 20538c7482ecSBarry Smith 2054f6d58c54SBarry Smith EXTERN PetscErrorCode CreateColmap_MPIBAIJ_Private(Mat); 2055f6d58c54SBarry Smith 2056f6d58c54SBarry Smith #undef __FUNCT__ 2057f6d58c54SBarry Smith #define __FUNCT__ "MatFDColoringCreate_MPIBAIJ" 2058f6d58c54SBarry Smith /* 2059f6d58c54SBarry Smith This routine is almost identical to MatFDColoringCreate_MPIBAIJ()! 2060f6d58c54SBarry Smith */ 2061f6d58c54SBarry Smith PetscErrorCode MatFDColoringCreate_MPIBAIJ(Mat mat,ISColoring iscoloring,MatFDColoring c) 2062f6d58c54SBarry Smith { 2063f6d58c54SBarry Smith Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 2064f6d58c54SBarry Smith PetscErrorCode ierr; 2065f6d58c54SBarry Smith PetscMPIInt size,*ncolsonproc,*disp,nn; 2066f6d58c54SBarry Smith PetscInt bs,i,n,nrows,j,k,m,*rows = 0,*A_ci,*A_cj,ncols,col; 2067f6d58c54SBarry Smith const PetscInt *is; 2068f6d58c54SBarry Smith PetscInt nis = iscoloring->n,nctot,*cols,*B_ci,*B_cj; 2069f6d58c54SBarry Smith PetscInt *rowhit,M,cstart,cend,colb; 2070f6d58c54SBarry Smith PetscInt *columnsforrow,l; 2071f6d58c54SBarry Smith IS *isa; 2072f6d58c54SBarry Smith PetscTruth done,flg; 2073f6d58c54SBarry Smith ISLocalToGlobalMapping map = mat->bmapping; 2074f6d58c54SBarry Smith PetscInt *ltog = (map ? map->indices : (PetscInt*) PETSC_NULL) ,ctype=c->ctype; 2075f6d58c54SBarry Smith 2076f6d58c54SBarry Smith PetscFunctionBegin; 2077e7e72b3dSBarry Smith if (!mat->assembled) SETERRQ(((PetscObject)mat)->comm,PETSC_ERR_ARG_WRONGSTATE,"Matrix must be assembled first; MatAssemblyBegin/End();"); 2078e7e72b3dSBarry Smith if (ctype == IS_COLORING_GHOSTED && !map) SETERRQ(((PetscObject)mat)->comm,PETSC_ERR_ARG_INCOMP,"When using ghosted differencing matrix must have local to global mapping provided with MatSetLocalToGlobalMappingBlock"); 2079f6d58c54SBarry Smith 2080f6d58c54SBarry Smith ierr = ISColoringGetIS(iscoloring,PETSC_IGNORE,&isa);CHKERRQ(ierr); 2081f6d58c54SBarry Smith ierr = MatGetBlockSize(mat,&bs);CHKERRQ(ierr); 2082f6d58c54SBarry Smith M = mat->rmap->n/bs; 2083f6d58c54SBarry Smith cstart = mat->cmap->rstart/bs; 2084f6d58c54SBarry Smith cend = mat->cmap->rend/bs; 2085f6d58c54SBarry Smith c->M = mat->rmap->N/bs; /* set the global rows and columns and local rows */ 2086f6d58c54SBarry Smith c->N = mat->cmap->N/bs; 2087f6d58c54SBarry Smith c->m = mat->rmap->n/bs; 2088f6d58c54SBarry Smith c->rstart = mat->rmap->rstart/bs; 2089f6d58c54SBarry Smith 2090f6d58c54SBarry Smith c->ncolors = nis; 2091f6d58c54SBarry Smith ierr = PetscMalloc(nis*sizeof(PetscInt),&c->ncolumns);CHKERRQ(ierr); 2092f6d58c54SBarry Smith ierr = PetscMalloc(nis*sizeof(PetscInt*),&c->columns);CHKERRQ(ierr); 2093f6d58c54SBarry Smith ierr = PetscMalloc(nis*sizeof(PetscInt),&c->nrows);CHKERRQ(ierr); 2094f6d58c54SBarry Smith ierr = PetscMalloc(nis*sizeof(PetscInt*),&c->rows);CHKERRQ(ierr); 2095f6d58c54SBarry Smith ierr = PetscMalloc(nis*sizeof(PetscInt*),&c->columnsforrow);CHKERRQ(ierr); 2096f6d58c54SBarry Smith ierr = PetscLogObjectMemory(c,5*nis*sizeof(PetscInt));CHKERRQ(ierr); 2097f6d58c54SBarry Smith 2098f6d58c54SBarry Smith /* Allow access to data structures of local part of matrix */ 2099f6d58c54SBarry Smith if (!baij->colmap) { 2100f6d58c54SBarry Smith ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 2101f6d58c54SBarry Smith } 2102f6d58c54SBarry Smith ierr = MatGetColumnIJ(baij->A,0,PETSC_FALSE,PETSC_FALSE,&ncols,&A_ci,&A_cj,&done);CHKERRQ(ierr); 2103f6d58c54SBarry Smith ierr = MatGetColumnIJ(baij->B,0,PETSC_FALSE,PETSC_FALSE,&ncols,&B_ci,&B_cj,&done);CHKERRQ(ierr); 2104f6d58c54SBarry Smith 2105f6d58c54SBarry Smith ierr = PetscMalloc((M+1)*sizeof(PetscInt),&rowhit);CHKERRQ(ierr); 2106f6d58c54SBarry Smith ierr = PetscMalloc((M+1)*sizeof(PetscInt),&columnsforrow);CHKERRQ(ierr); 2107f6d58c54SBarry Smith 2108f6d58c54SBarry Smith for (i=0; i<nis; i++) { 2109f6d58c54SBarry Smith ierr = ISGetLocalSize(isa[i],&n);CHKERRQ(ierr); 2110f6d58c54SBarry Smith ierr = ISGetIndices(isa[i],&is);CHKERRQ(ierr); 2111f6d58c54SBarry Smith c->ncolumns[i] = n; 2112f6d58c54SBarry Smith if (n) { 2113f6d58c54SBarry Smith ierr = PetscMalloc(n*sizeof(PetscInt),&c->columns[i]);CHKERRQ(ierr); 2114f6d58c54SBarry Smith ierr = PetscLogObjectMemory(c,n*sizeof(PetscInt));CHKERRQ(ierr); 2115f6d58c54SBarry Smith ierr = PetscMemcpy(c->columns[i],is,n*sizeof(PetscInt));CHKERRQ(ierr); 2116f6d58c54SBarry Smith } else { 2117f6d58c54SBarry Smith c->columns[i] = 0; 2118f6d58c54SBarry Smith } 2119f6d58c54SBarry Smith 2120f6d58c54SBarry Smith if (ctype == IS_COLORING_GLOBAL){ 2121f6d58c54SBarry Smith /* Determine the total (parallel) number of columns of this color */ 2122f6d58c54SBarry Smith ierr = MPI_Comm_size(((PetscObject)mat)->comm,&size);CHKERRQ(ierr); 2123fca92195SBarry Smith ierr = PetscMalloc2(size,PetscMPIInt,&ncolsonproc,size,PetscMPIInt,&disp);CHKERRQ(ierr); 2124f6d58c54SBarry Smith 2125f6d58c54SBarry Smith nn = PetscMPIIntCast(n); 2126f6d58c54SBarry Smith ierr = MPI_Allgather(&nn,1,MPI_INT,ncolsonproc,1,MPI_INT,((PetscObject)mat)->comm);CHKERRQ(ierr); 2127f6d58c54SBarry Smith nctot = 0; for (j=0; j<size; j++) {nctot += ncolsonproc[j];} 2128f6d58c54SBarry Smith if (!nctot) { 2129f6d58c54SBarry Smith ierr = PetscInfo(mat,"Coloring of matrix has some unneeded colors with no corresponding rows\n");CHKERRQ(ierr); 2130f6d58c54SBarry Smith } 2131f6d58c54SBarry Smith 2132f6d58c54SBarry Smith disp[0] = 0; 2133f6d58c54SBarry Smith for (j=1; j<size; j++) { 2134f6d58c54SBarry Smith disp[j] = disp[j-1] + ncolsonproc[j-1]; 2135f6d58c54SBarry Smith } 2136f6d58c54SBarry Smith 2137f6d58c54SBarry Smith /* Get complete list of columns for color on each processor */ 2138f6d58c54SBarry Smith ierr = PetscMalloc((nctot+1)*sizeof(PetscInt),&cols);CHKERRQ(ierr); 2139f6d58c54SBarry Smith ierr = MPI_Allgatherv((void*)is,n,MPIU_INT,cols,ncolsonproc,disp,MPIU_INT,((PetscObject)mat)->comm);CHKERRQ(ierr); 2140fca92195SBarry Smith ierr = PetscFree2(ncolsonproc,disp);CHKERRQ(ierr); 2141f6d58c54SBarry Smith } else if (ctype == IS_COLORING_GHOSTED){ 2142f6d58c54SBarry Smith /* Determine local number of columns of this color on this process, including ghost points */ 2143f6d58c54SBarry Smith nctot = n; 2144f6d58c54SBarry Smith ierr = PetscMalloc((nctot+1)*sizeof(PetscInt),&cols);CHKERRQ(ierr); 2145f6d58c54SBarry Smith ierr = PetscMemcpy(cols,is,n*sizeof(PetscInt));CHKERRQ(ierr); 2146f6d58c54SBarry Smith } else { 2147e32f2f54SBarry Smith SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Not provided for this MatFDColoring type"); 2148f6d58c54SBarry Smith } 2149f6d58c54SBarry Smith 2150f6d58c54SBarry Smith /* 2151f6d58c54SBarry Smith Mark all rows affect by these columns 2152f6d58c54SBarry Smith */ 2153f6d58c54SBarry Smith /* Temporary option to allow for debugging/testing */ 2154f6d58c54SBarry Smith flg = PETSC_FALSE; 2155f6d58c54SBarry Smith ierr = PetscOptionsGetTruth(PETSC_NULL,"-matfdcoloring_slow",&flg,PETSC_NULL);CHKERRQ(ierr); 2156f6d58c54SBarry Smith if (!flg) {/*-----------------------------------------------------------------------------*/ 2157f6d58c54SBarry Smith /* crude, fast version */ 2158f6d58c54SBarry Smith ierr = PetscMemzero(rowhit,M*sizeof(PetscInt));CHKERRQ(ierr); 2159f6d58c54SBarry Smith /* loop over columns*/ 2160f6d58c54SBarry Smith for (j=0; j<nctot; j++) { 2161f6d58c54SBarry Smith if (ctype == IS_COLORING_GHOSTED) { 2162f6d58c54SBarry Smith col = ltog[cols[j]]; 2163f6d58c54SBarry Smith } else { 2164f6d58c54SBarry Smith col = cols[j]; 2165f6d58c54SBarry Smith } 2166f6d58c54SBarry Smith if (col >= cstart && col < cend) { 2167f6d58c54SBarry Smith /* column is in diagonal block of matrix */ 2168f6d58c54SBarry Smith rows = A_cj + A_ci[col-cstart]; 2169f6d58c54SBarry Smith m = A_ci[col-cstart+1] - A_ci[col-cstart]; 2170f6d58c54SBarry Smith } else { 2171f6d58c54SBarry Smith #if defined (PETSC_USE_CTABLE) 2172cb9801acSJed Brown ierr = PetscTableFind(baij->colmap,col+1,&colb);CHKERRQ(ierr); 2173f6d58c54SBarry Smith colb --; 2174f6d58c54SBarry Smith #else 2175f6d58c54SBarry Smith colb = baij->colmap[col] - 1; 2176f6d58c54SBarry Smith #endif 2177f6d58c54SBarry Smith if (colb == -1) { 2178f6d58c54SBarry Smith m = 0; 2179f6d58c54SBarry Smith } else { 2180f6d58c54SBarry Smith colb = colb/bs; 2181f6d58c54SBarry Smith rows = B_cj + B_ci[colb]; 2182f6d58c54SBarry Smith m = B_ci[colb+1] - B_ci[colb]; 2183f6d58c54SBarry Smith } 2184f6d58c54SBarry Smith } 2185f6d58c54SBarry Smith /* loop over columns marking them in rowhit */ 2186f6d58c54SBarry Smith for (k=0; k<m; k++) { 2187f6d58c54SBarry Smith rowhit[*rows++] = col + 1; 2188f6d58c54SBarry Smith } 2189f6d58c54SBarry Smith } 2190f6d58c54SBarry Smith 2191f6d58c54SBarry Smith /* count the number of hits */ 2192f6d58c54SBarry Smith nrows = 0; 2193f6d58c54SBarry Smith for (j=0; j<M; j++) { 2194f6d58c54SBarry Smith if (rowhit[j]) nrows++; 2195f6d58c54SBarry Smith } 2196f6d58c54SBarry Smith c->nrows[i] = nrows; 2197f6d58c54SBarry Smith ierr = PetscMalloc((nrows+1)*sizeof(PetscInt),&c->rows[i]);CHKERRQ(ierr); 2198f6d58c54SBarry Smith ierr = PetscMalloc((nrows+1)*sizeof(PetscInt),&c->columnsforrow[i]);CHKERRQ(ierr); 2199f6d58c54SBarry Smith ierr = PetscLogObjectMemory(c,2*(nrows+1)*sizeof(PetscInt));CHKERRQ(ierr); 2200f6d58c54SBarry Smith nrows = 0; 2201f6d58c54SBarry Smith for (j=0; j<M; j++) { 2202f6d58c54SBarry Smith if (rowhit[j]) { 2203f6d58c54SBarry Smith c->rows[i][nrows] = j; 2204f6d58c54SBarry Smith c->columnsforrow[i][nrows] = rowhit[j] - 1; 2205f6d58c54SBarry Smith nrows++; 2206f6d58c54SBarry Smith } 2207f6d58c54SBarry Smith } 2208f6d58c54SBarry Smith } else {/*-------------------------------------------------------------------------------*/ 2209f6d58c54SBarry Smith /* slow version, using rowhit as a linked list */ 2210f6d58c54SBarry Smith PetscInt currentcol,fm,mfm; 2211f6d58c54SBarry Smith rowhit[M] = M; 2212f6d58c54SBarry Smith nrows = 0; 2213f6d58c54SBarry Smith /* loop over columns*/ 2214f6d58c54SBarry Smith for (j=0; j<nctot; j++) { 2215f6d58c54SBarry Smith if (ctype == IS_COLORING_GHOSTED) { 2216f6d58c54SBarry Smith col = ltog[cols[j]]; 2217f6d58c54SBarry Smith } else { 2218f6d58c54SBarry Smith col = cols[j]; 2219f6d58c54SBarry Smith } 2220f6d58c54SBarry Smith if (col >= cstart && col < cend) { 2221f6d58c54SBarry Smith /* column is in diagonal block of matrix */ 2222f6d58c54SBarry Smith rows = A_cj + A_ci[col-cstart]; 2223f6d58c54SBarry Smith m = A_ci[col-cstart+1] - A_ci[col-cstart]; 2224f6d58c54SBarry Smith } else { 2225f6d58c54SBarry Smith #if defined (PETSC_USE_CTABLE) 2226f6d58c54SBarry Smith ierr = PetscTableFind(baij->colmap,col+1,&colb);CHKERRQ(ierr); 2227f6d58c54SBarry Smith colb --; 2228f6d58c54SBarry Smith #else 2229f6d58c54SBarry Smith colb = baij->colmap[col] - 1; 2230f6d58c54SBarry Smith #endif 2231f6d58c54SBarry Smith if (colb == -1) { 2232f6d58c54SBarry Smith m = 0; 2233f6d58c54SBarry Smith } else { 2234f6d58c54SBarry Smith colb = colb/bs; 2235f6d58c54SBarry Smith rows = B_cj + B_ci[colb]; 2236f6d58c54SBarry Smith m = B_ci[colb+1] - B_ci[colb]; 2237f6d58c54SBarry Smith } 2238f6d58c54SBarry Smith } 2239f6d58c54SBarry Smith 2240f6d58c54SBarry Smith /* loop over columns marking them in rowhit */ 2241f6d58c54SBarry Smith fm = M; /* fm points to first entry in linked list */ 2242f6d58c54SBarry Smith for (k=0; k<m; k++) { 2243f6d58c54SBarry Smith currentcol = *rows++; 2244f6d58c54SBarry Smith /* is it already in the list? */ 2245f6d58c54SBarry Smith do { 2246f6d58c54SBarry Smith mfm = fm; 2247f6d58c54SBarry Smith fm = rowhit[fm]; 2248f6d58c54SBarry Smith } while (fm < currentcol); 2249f6d58c54SBarry Smith /* not in list so add it */ 2250f6d58c54SBarry Smith if (fm != currentcol) { 2251f6d58c54SBarry Smith nrows++; 2252f6d58c54SBarry Smith columnsforrow[currentcol] = col; 2253f6d58c54SBarry Smith /* next three lines insert new entry into linked list */ 2254f6d58c54SBarry Smith rowhit[mfm] = currentcol; 2255f6d58c54SBarry Smith rowhit[currentcol] = fm; 2256f6d58c54SBarry Smith fm = currentcol; 2257f6d58c54SBarry Smith /* fm points to present position in list since we know the columns are sorted */ 2258f6d58c54SBarry Smith } else { 2259e32f2f54SBarry Smith SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Invalid coloring of matrix detected"); 2260f6d58c54SBarry Smith } 2261f6d58c54SBarry Smith } 2262f6d58c54SBarry Smith } 2263f6d58c54SBarry Smith c->nrows[i] = nrows; 2264f6d58c54SBarry Smith ierr = PetscMalloc((nrows+1)*sizeof(PetscInt),&c->rows[i]);CHKERRQ(ierr); 2265f6d58c54SBarry Smith ierr = PetscMalloc((nrows+1)*sizeof(PetscInt),&c->columnsforrow[i]);CHKERRQ(ierr); 2266f6d58c54SBarry Smith ierr = PetscLogObjectMemory(c,(nrows+1)*sizeof(PetscInt));CHKERRQ(ierr); 2267f6d58c54SBarry Smith /* now store the linked list of rows into c->rows[i] */ 2268f6d58c54SBarry Smith nrows = 0; 2269f6d58c54SBarry Smith fm = rowhit[M]; 2270f6d58c54SBarry Smith do { 2271f6d58c54SBarry Smith c->rows[i][nrows] = fm; 2272f6d58c54SBarry Smith c->columnsforrow[i][nrows++] = columnsforrow[fm]; 2273f6d58c54SBarry Smith fm = rowhit[fm]; 2274f6d58c54SBarry Smith } while (fm < M); 2275f6d58c54SBarry Smith } /* ---------------------------------------------------------------------------------------*/ 2276f6d58c54SBarry Smith ierr = PetscFree(cols);CHKERRQ(ierr); 2277f6d58c54SBarry Smith } 2278f6d58c54SBarry Smith 2279f6d58c54SBarry Smith /* Optimize by adding the vscale, and scaleforrow[][] fields */ 2280f6d58c54SBarry Smith /* 2281f6d58c54SBarry Smith vscale will contain the "diagonal" on processor scalings followed by the off processor 2282f6d58c54SBarry Smith */ 2283f6d58c54SBarry Smith if (ctype == IS_COLORING_GLOBAL) { 2284f6d58c54SBarry Smith PetscInt *garray; 2285f6d58c54SBarry Smith ierr = PetscMalloc(baij->B->cmap->n*sizeof(PetscInt),&garray);CHKERRQ(ierr); 2286f6d58c54SBarry Smith for (i=0; i<baij->B->cmap->n/bs; i++) { 2287f6d58c54SBarry Smith for (j=0; j<bs; j++) { 2288f6d58c54SBarry Smith garray[i*bs+j] = bs*baij->garray[i]+j; 2289f6d58c54SBarry Smith } 2290f6d58c54SBarry Smith } 2291f6d58c54SBarry Smith ierr = VecCreateGhost(((PetscObject)mat)->comm,baij->A->rmap->n,PETSC_DETERMINE,baij->B->cmap->n,garray,&c->vscale);CHKERRQ(ierr); 2292f6d58c54SBarry Smith ierr = PetscFree(garray);CHKERRQ(ierr); 2293f6d58c54SBarry Smith CHKMEMQ; 2294f6d58c54SBarry Smith ierr = PetscMalloc(c->ncolors*sizeof(PetscInt*),&c->vscaleforrow);CHKERRQ(ierr); 2295f6d58c54SBarry Smith for (k=0; k<c->ncolors; k++) { 2296f6d58c54SBarry Smith ierr = PetscMalloc((c->nrows[k]+1)*sizeof(PetscInt),&c->vscaleforrow[k]);CHKERRQ(ierr); 2297f6d58c54SBarry Smith for (l=0; l<c->nrows[k]; l++) { 2298f6d58c54SBarry Smith col = c->columnsforrow[k][l]; 2299f6d58c54SBarry Smith if (col >= cstart && col < cend) { 2300f6d58c54SBarry Smith /* column is in diagonal block of matrix */ 2301f6d58c54SBarry Smith colb = col - cstart; 2302f6d58c54SBarry Smith } else { 2303f6d58c54SBarry Smith /* column is in "off-processor" part */ 2304f6d58c54SBarry Smith #if defined (PETSC_USE_CTABLE) 2305f6d58c54SBarry Smith ierr = PetscTableFind(baij->colmap,col+1,&colb);CHKERRQ(ierr); 2306f6d58c54SBarry Smith colb --; 2307f6d58c54SBarry Smith #else 2308f6d58c54SBarry Smith colb = baij->colmap[col] - 1; 2309f6d58c54SBarry Smith #endif 2310f6d58c54SBarry Smith colb = colb/bs; 2311f6d58c54SBarry Smith colb += cend - cstart; 2312f6d58c54SBarry Smith } 2313f6d58c54SBarry Smith c->vscaleforrow[k][l] = colb; 2314f6d58c54SBarry Smith } 2315f6d58c54SBarry Smith } 2316f6d58c54SBarry Smith } else if (ctype == IS_COLORING_GHOSTED) { 2317f6d58c54SBarry Smith /* Get gtol mapping */ 2318f6d58c54SBarry Smith PetscInt N = mat->cmap->N, *gtol; 2319f6d58c54SBarry Smith ierr = PetscMalloc((N+1)*sizeof(PetscInt),>ol);CHKERRQ(ierr); 2320f6d58c54SBarry Smith for (i=0; i<N; i++) gtol[i] = -1; 2321f6d58c54SBarry Smith for (i=0; i<map->n; i++) gtol[ltog[i]] = i; 2322f6d58c54SBarry Smith 2323f6d58c54SBarry Smith c->vscale = 0; /* will be created in MatFDColoringApply() */ 2324f6d58c54SBarry Smith ierr = PetscMalloc(c->ncolors*sizeof(PetscInt*),&c->vscaleforrow);CHKERRQ(ierr); 2325f6d58c54SBarry Smith for (k=0; k<c->ncolors; k++) { 2326f6d58c54SBarry Smith ierr = PetscMalloc((c->nrows[k]+1)*sizeof(PetscInt),&c->vscaleforrow[k]);CHKERRQ(ierr); 2327f6d58c54SBarry Smith for (l=0; l<c->nrows[k]; l++) { 2328f6d58c54SBarry Smith col = c->columnsforrow[k][l]; /* global column index */ 2329f6d58c54SBarry Smith c->vscaleforrow[k][l] = gtol[col]; /* local column index */ 2330f6d58c54SBarry Smith } 2331f6d58c54SBarry Smith } 2332f6d58c54SBarry Smith ierr = PetscFree(gtol);CHKERRQ(ierr); 2333f6d58c54SBarry Smith } 2334f6d58c54SBarry Smith ierr = ISColoringRestoreIS(iscoloring,&isa);CHKERRQ(ierr); 2335f6d58c54SBarry Smith 2336f6d58c54SBarry Smith ierr = PetscFree(rowhit);CHKERRQ(ierr); 2337f6d58c54SBarry Smith ierr = PetscFree(columnsforrow);CHKERRQ(ierr); 2338f6d58c54SBarry Smith ierr = MatRestoreColumnIJ(baij->A,0,PETSC_FALSE,PETSC_FALSE,&ncols,&A_ci,&A_cj,&done);CHKERRQ(ierr); 2339f6d58c54SBarry Smith ierr = MatRestoreColumnIJ(baij->B,0,PETSC_FALSE,PETSC_FALSE,&ncols,&B_ci,&B_cj,&done);CHKERRQ(ierr); 2340f6d58c54SBarry Smith CHKMEMQ; 2341f6d58c54SBarry Smith PetscFunctionReturn(0); 2342f6d58c54SBarry Smith } 2343f6d58c54SBarry Smith 2344f6d58c54SBarry Smith #undef __FUNCT__ 2345f6d58c54SBarry Smith #define __FUNCT__ "MatGetSeqNonzerostructure_MPIBAIJ" 2346f6d58c54SBarry Smith PetscErrorCode MatGetSeqNonzerostructure_MPIBAIJ(Mat A,Mat *newmat) 2347f6d58c54SBarry Smith { 2348f6d58c54SBarry Smith Mat B; 2349f6d58c54SBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 2350f6d58c54SBarry Smith Mat_SeqBAIJ *ad = (Mat_SeqBAIJ*)a->A->data,*bd = (Mat_SeqBAIJ*)a->B->data; 2351f6d58c54SBarry Smith Mat_SeqAIJ *b; 2352f6d58c54SBarry Smith PetscErrorCode ierr; 2353f6d58c54SBarry Smith PetscMPIInt size,rank,*recvcounts = 0,*displs = 0; 2354f6d58c54SBarry Smith PetscInt sendcount,i,*rstarts = A->rmap->range,n,cnt,j,bs = A->rmap->bs; 2355f6d58c54SBarry Smith PetscInt m,*garray = a->garray,*lens,*jsendbuf,*a_jsendbuf,*b_jsendbuf; 2356f6d58c54SBarry Smith 2357f6d58c54SBarry Smith PetscFunctionBegin; 2358f6d58c54SBarry Smith ierr = MPI_Comm_size(((PetscObject)A)->comm,&size);CHKERRQ(ierr); 2359f6d58c54SBarry Smith ierr = MPI_Comm_rank(((PetscObject)A)->comm,&rank);CHKERRQ(ierr); 2360f6d58c54SBarry Smith 2361f6d58c54SBarry Smith /* ---------------------------------------------------------------- 2362f6d58c54SBarry Smith Tell every processor the number of nonzeros per row 2363f6d58c54SBarry Smith */ 2364f6d58c54SBarry Smith ierr = PetscMalloc((A->rmap->N/bs)*sizeof(PetscInt),&lens);CHKERRQ(ierr); 2365f6d58c54SBarry Smith for (i=A->rmap->rstart/bs; i<A->rmap->rend/bs; i++) { 2366f6d58c54SBarry Smith lens[i] = ad->i[i-A->rmap->rstart/bs+1] - ad->i[i-A->rmap->rstart/bs] + bd->i[i-A->rmap->rstart/bs+1] - bd->i[i-A->rmap->rstart/bs]; 2367f6d58c54SBarry Smith } 2368f6d58c54SBarry Smith sendcount = A->rmap->rend/bs - A->rmap->rstart/bs; 2369f6d58c54SBarry Smith ierr = PetscMalloc(2*size*sizeof(PetscMPIInt),&recvcounts);CHKERRQ(ierr); 2370f6d58c54SBarry Smith displs = recvcounts + size; 2371f6d58c54SBarry Smith for (i=0; i<size; i++) { 2372f6d58c54SBarry Smith recvcounts[i] = A->rmap->range[i+1]/bs - A->rmap->range[i]/bs; 2373f6d58c54SBarry Smith displs[i] = A->rmap->range[i]/bs; 2374f6d58c54SBarry Smith } 2375f6d58c54SBarry Smith #if defined(PETSC_HAVE_MPI_IN_PLACE) 2376f6d58c54SBarry Smith ierr = MPI_Allgatherv(MPI_IN_PLACE,0,MPI_DATATYPE_NULL,lens,recvcounts,displs,MPIU_INT,((PetscObject)A)->comm);CHKERRQ(ierr); 2377f6d58c54SBarry Smith #else 2378f6d58c54SBarry Smith ierr = MPI_Allgatherv(lens+A->rmap->rstart/bs,sendcount,MPIU_INT,lens,recvcounts,displs,MPIU_INT,((PetscObject)A)->comm);CHKERRQ(ierr); 2379f6d58c54SBarry Smith #endif 2380f6d58c54SBarry Smith /* --------------------------------------------------------------- 2381f6d58c54SBarry Smith Create the sequential matrix of the same type as the local block diagonal 2382f6d58c54SBarry Smith */ 2383f6d58c54SBarry Smith ierr = MatCreate(PETSC_COMM_SELF,&B);CHKERRQ(ierr); 2384f6d58c54SBarry Smith ierr = MatSetSizes(B,A->rmap->N/bs,A->cmap->N/bs,PETSC_DETERMINE,PETSC_DETERMINE);CHKERRQ(ierr); 2385f6d58c54SBarry Smith ierr = MatSetType(B,MATSEQAIJ);CHKERRQ(ierr); 2386f6d58c54SBarry Smith ierr = MatSeqAIJSetPreallocation(B,0,lens);CHKERRQ(ierr); 2387f6d58c54SBarry Smith b = (Mat_SeqAIJ *)B->data; 2388f6d58c54SBarry Smith 2389f6d58c54SBarry Smith /*-------------------------------------------------------------------- 2390f6d58c54SBarry Smith Copy my part of matrix column indices over 2391f6d58c54SBarry Smith */ 2392f6d58c54SBarry Smith sendcount = ad->nz + bd->nz; 2393f6d58c54SBarry Smith jsendbuf = b->j + b->i[rstarts[rank]/bs]; 2394f6d58c54SBarry Smith a_jsendbuf = ad->j; 2395f6d58c54SBarry Smith b_jsendbuf = bd->j; 2396f6d58c54SBarry Smith n = A->rmap->rend/bs - A->rmap->rstart/bs; 2397f6d58c54SBarry Smith cnt = 0; 2398f6d58c54SBarry Smith for (i=0; i<n; i++) { 2399f6d58c54SBarry Smith 2400f6d58c54SBarry Smith /* put in lower diagonal portion */ 2401f6d58c54SBarry Smith m = bd->i[i+1] - bd->i[i]; 2402f6d58c54SBarry Smith while (m > 0) { 2403f6d58c54SBarry Smith /* is it above diagonal (in bd (compressed) numbering) */ 2404f6d58c54SBarry Smith if (garray[*b_jsendbuf] > A->rmap->rstart/bs + i) break; 2405f6d58c54SBarry Smith jsendbuf[cnt++] = garray[*b_jsendbuf++]; 2406f6d58c54SBarry Smith m--; 2407f6d58c54SBarry Smith } 2408f6d58c54SBarry Smith 2409f6d58c54SBarry Smith /* put in diagonal portion */ 2410f6d58c54SBarry Smith for (j=ad->i[i]; j<ad->i[i+1]; j++) { 2411f6d58c54SBarry Smith jsendbuf[cnt++] = A->rmap->rstart/bs + *a_jsendbuf++; 2412f6d58c54SBarry Smith } 2413f6d58c54SBarry Smith 2414f6d58c54SBarry Smith /* put in upper diagonal portion */ 2415f6d58c54SBarry Smith while (m-- > 0) { 2416f6d58c54SBarry Smith jsendbuf[cnt++] = garray[*b_jsendbuf++]; 2417f6d58c54SBarry Smith } 2418f6d58c54SBarry Smith } 2419e32f2f54SBarry Smith if (cnt != sendcount) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Corrupted PETSc matrix: nz given %D actual nz %D",sendcount,cnt); 2420f6d58c54SBarry Smith 2421f6d58c54SBarry Smith /*-------------------------------------------------------------------- 2422f6d58c54SBarry Smith Gather all column indices to all processors 2423f6d58c54SBarry Smith */ 2424f6d58c54SBarry Smith for (i=0; i<size; i++) { 2425f6d58c54SBarry Smith recvcounts[i] = 0; 2426f6d58c54SBarry Smith for (j=A->rmap->range[i]/bs; j<A->rmap->range[i+1]/bs; j++) { 2427f6d58c54SBarry Smith recvcounts[i] += lens[j]; 2428f6d58c54SBarry Smith } 2429f6d58c54SBarry Smith } 2430f6d58c54SBarry Smith displs[0] = 0; 2431f6d58c54SBarry Smith for (i=1; i<size; i++) { 2432f6d58c54SBarry Smith displs[i] = displs[i-1] + recvcounts[i-1]; 2433f6d58c54SBarry Smith } 2434f6d58c54SBarry Smith #if defined(PETSC_HAVE_MPI_IN_PLACE) 2435f6d58c54SBarry Smith ierr = MPI_Allgatherv(MPI_IN_PLACE,0,MPI_DATATYPE_NULL,b->j,recvcounts,displs,MPIU_INT,((PetscObject)A)->comm);CHKERRQ(ierr); 2436f6d58c54SBarry Smith #else 2437f6d58c54SBarry Smith ierr = MPI_Allgatherv(jsendbuf,sendcount,MPIU_INT,b->j,recvcounts,displs,MPIU_INT,((PetscObject)A)->comm);CHKERRQ(ierr); 2438f6d58c54SBarry Smith #endif 2439f6d58c54SBarry Smith /*-------------------------------------------------------------------- 2440f6d58c54SBarry Smith Assemble the matrix into useable form (note numerical values not yet set) 2441f6d58c54SBarry Smith */ 2442f6d58c54SBarry Smith /* set the b->ilen (length of each row) values */ 2443f6d58c54SBarry Smith ierr = PetscMemcpy(b->ilen,lens,(A->rmap->N/bs)*sizeof(PetscInt));CHKERRQ(ierr); 2444f6d58c54SBarry Smith /* set the b->i indices */ 2445f6d58c54SBarry Smith b->i[0] = 0; 2446f6d58c54SBarry Smith for (i=1; i<=A->rmap->N/bs; i++) { 2447f6d58c54SBarry Smith b->i[i] = b->i[i-1] + lens[i-1]; 2448f6d58c54SBarry Smith } 2449f6d58c54SBarry Smith ierr = PetscFree(lens);CHKERRQ(ierr); 2450f6d58c54SBarry Smith ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 2451f6d58c54SBarry Smith ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 2452f6d58c54SBarry Smith ierr = PetscFree(recvcounts);CHKERRQ(ierr); 2453f6d58c54SBarry Smith 2454f6d58c54SBarry Smith if (A->symmetric){ 2455f6d58c54SBarry Smith ierr = MatSetOption(B,MAT_SYMMETRIC,PETSC_TRUE);CHKERRQ(ierr); 2456f6d58c54SBarry Smith } else if (A->hermitian) { 2457f6d58c54SBarry Smith ierr = MatSetOption(B,MAT_HERMITIAN,PETSC_TRUE);CHKERRQ(ierr); 2458f6d58c54SBarry Smith } else if (A->structurally_symmetric) { 2459f6d58c54SBarry Smith ierr = MatSetOption(B,MAT_STRUCTURALLY_SYMMETRIC,PETSC_TRUE);CHKERRQ(ierr); 2460f6d58c54SBarry Smith } 2461f6d58c54SBarry Smith *newmat = B; 2462f6d58c54SBarry Smith PetscFunctionReturn(0); 2463f6d58c54SBarry Smith } 2464f6d58c54SBarry Smith 2465b1a666ecSBarry Smith #undef __FUNCT__ 2466b1a666ecSBarry Smith #define __FUNCT__ "MatSOR_MPIBAIJ" 2467b1a666ecSBarry Smith PetscErrorCode MatSOR_MPIBAIJ(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx) 2468b1a666ecSBarry Smith { 2469b1a666ecSBarry Smith Mat_MPIBAIJ *mat = (Mat_MPIBAIJ*)matin->data; 2470b1a666ecSBarry Smith PetscErrorCode ierr; 2471b1a666ecSBarry Smith Vec bb1 = 0; 2472b1a666ecSBarry Smith 2473b1a666ecSBarry Smith PetscFunctionBegin; 2474b1a666ecSBarry Smith if (its > 1 || ~flag & SOR_ZERO_INITIAL_GUESS) { 2475b1a666ecSBarry Smith ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr); 2476b1a666ecSBarry Smith } 2477b1a666ecSBarry Smith 2478b1a666ecSBarry Smith if (flag == SOR_APPLY_UPPER) { 2479b1a666ecSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr); 2480b1a666ecSBarry Smith PetscFunctionReturn(0); 2481b1a666ecSBarry Smith } 2482b1a666ecSBarry Smith 2483b1a666ecSBarry Smith if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP){ 2484b1a666ecSBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 2485b1a666ecSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr); 2486b1a666ecSBarry Smith its--; 2487b1a666ecSBarry Smith } 2488b1a666ecSBarry Smith 2489b1a666ecSBarry Smith while (its--) { 2490b1a666ecSBarry Smith ierr = VecScatterBegin(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 2491b1a666ecSBarry Smith ierr = VecScatterEnd(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 2492b1a666ecSBarry Smith 2493b1a666ecSBarry Smith /* update rhs: bb1 = bb - B*x */ 2494b1a666ecSBarry Smith ierr = VecScale(mat->lvec,-1.0);CHKERRQ(ierr); 2495b1a666ecSBarry Smith ierr = (*mat->B->ops->multadd)(mat->B,mat->lvec,bb,bb1);CHKERRQ(ierr); 2496b1a666ecSBarry Smith 2497b1a666ecSBarry Smith /* local sweep */ 2498b1a666ecSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,1,xx);CHKERRQ(ierr); 2499b1a666ecSBarry Smith } 2500b1a666ecSBarry Smith } else if (flag & SOR_LOCAL_FORWARD_SWEEP){ 2501b1a666ecSBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 2502b1a666ecSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr); 2503b1a666ecSBarry Smith its--; 2504b1a666ecSBarry Smith } 2505b1a666ecSBarry Smith while (its--) { 2506b1a666ecSBarry Smith ierr = VecScatterBegin(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 2507b1a666ecSBarry Smith ierr = VecScatterEnd(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 2508b1a666ecSBarry Smith 2509b1a666ecSBarry Smith /* update rhs: bb1 = bb - B*x */ 2510b1a666ecSBarry Smith ierr = VecScale(mat->lvec,-1.0);CHKERRQ(ierr); 2511b1a666ecSBarry Smith ierr = (*mat->B->ops->multadd)(mat->B,mat->lvec,bb,bb1);CHKERRQ(ierr); 2512b1a666ecSBarry Smith 2513b1a666ecSBarry Smith /* local sweep */ 2514b1a666ecSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_FORWARD_SWEEP,fshift,lits,1,xx);CHKERRQ(ierr); 2515b1a666ecSBarry Smith } 2516b1a666ecSBarry Smith } else if (flag & SOR_LOCAL_BACKWARD_SWEEP){ 2517b1a666ecSBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 2518b1a666ecSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr); 2519b1a666ecSBarry Smith its--; 2520b1a666ecSBarry Smith } 2521b1a666ecSBarry Smith while (its--) { 2522b1a666ecSBarry Smith ierr = VecScatterBegin(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 2523b1a666ecSBarry Smith ierr = VecScatterEnd(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 2524b1a666ecSBarry Smith 2525b1a666ecSBarry Smith /* update rhs: bb1 = bb - B*x */ 2526b1a666ecSBarry Smith ierr = VecScale(mat->lvec,-1.0);CHKERRQ(ierr); 2527b1a666ecSBarry Smith ierr = (*mat->B->ops->multadd)(mat->B,mat->lvec,bb,bb1);CHKERRQ(ierr); 2528b1a666ecSBarry Smith 2529b1a666ecSBarry Smith /* local sweep */ 2530b1a666ecSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_BACKWARD_SWEEP,fshift,lits,1,xx);CHKERRQ(ierr); 2531b1a666ecSBarry Smith } 2532e7e72b3dSBarry Smith } else SETERRQ(((PetscObject)matin)->comm,PETSC_ERR_SUP,"Parallel version of SOR requested not supported"); 2533b1a666ecSBarry Smith 2534b1a666ecSBarry Smith if (bb1) {ierr = VecDestroy(bb1);CHKERRQ(ierr);} 2535b1a666ecSBarry Smith PetscFunctionReturn(0); 2536b1a666ecSBarry Smith } 2537b1a666ecSBarry Smith 2538f6d58c54SBarry Smith extern PetscErrorCode PETSCMAT_DLLEXPORT MatFDColoringApply_BAIJ(Mat,MatFDColoring,Vec,MatStructure*,void*); 2539f6d58c54SBarry Smith 25408c7482ecSBarry Smith 254179bdfe76SSatish Balay /* -------------------------------------------------------------------*/ 2542cc2dc46cSBarry Smith static struct _MatOps MatOps_Values = { 2543cc2dc46cSBarry Smith MatSetValues_MPIBAIJ, 2544cc2dc46cSBarry Smith MatGetRow_MPIBAIJ, 2545cc2dc46cSBarry Smith MatRestoreRow_MPIBAIJ, 2546cc2dc46cSBarry Smith MatMult_MPIBAIJ, 254797304618SKris Buschelman /* 4*/ MatMultAdd_MPIBAIJ, 25487c922b88SBarry Smith MatMultTranspose_MPIBAIJ, 25497c922b88SBarry Smith MatMultTransposeAdd_MPIBAIJ, 2550cc2dc46cSBarry Smith 0, 2551cc2dc46cSBarry Smith 0, 2552cc2dc46cSBarry Smith 0, 255397304618SKris Buschelman /*10*/ 0, 2554cc2dc46cSBarry Smith 0, 2555cc2dc46cSBarry Smith 0, 2556b1a666ecSBarry Smith MatSOR_MPIBAIJ, 2557cc2dc46cSBarry Smith MatTranspose_MPIBAIJ, 255897304618SKris Buschelman /*15*/ MatGetInfo_MPIBAIJ, 25597fc3c18eSBarry Smith MatEqual_MPIBAIJ, 2560cc2dc46cSBarry Smith MatGetDiagonal_MPIBAIJ, 2561cc2dc46cSBarry Smith MatDiagonalScale_MPIBAIJ, 2562cc2dc46cSBarry Smith MatNorm_MPIBAIJ, 256397304618SKris Buschelman /*20*/ MatAssemblyBegin_MPIBAIJ, 2564cc2dc46cSBarry Smith MatAssemblyEnd_MPIBAIJ, 2565cc2dc46cSBarry Smith MatSetOption_MPIBAIJ, 2566cc2dc46cSBarry Smith MatZeroEntries_MPIBAIJ, 2567d519adbfSMatthew Knepley /*24*/ MatZeroRows_MPIBAIJ, 2568cc2dc46cSBarry Smith 0, 2569cc2dc46cSBarry Smith 0, 2570cc2dc46cSBarry Smith 0, 2571cc2dc46cSBarry Smith 0, 2572d519adbfSMatthew Knepley /*29*/ MatSetUpPreallocation_MPIBAIJ, 2573273d9f13SBarry Smith 0, 2574cc2dc46cSBarry Smith 0, 2575cc2dc46cSBarry Smith 0, 2576cc2dc46cSBarry Smith 0, 2577d519adbfSMatthew Knepley /*34*/ MatDuplicate_MPIBAIJ, 2578cc2dc46cSBarry Smith 0, 2579cc2dc46cSBarry Smith 0, 2580cc2dc46cSBarry Smith 0, 2581cc2dc46cSBarry Smith 0, 2582d519adbfSMatthew Knepley /*39*/ MatAXPY_MPIBAIJ, 2583cc2dc46cSBarry Smith MatGetSubMatrices_MPIBAIJ, 2584cc2dc46cSBarry Smith MatIncreaseOverlap_MPIBAIJ, 2585cc2dc46cSBarry Smith MatGetValues_MPIBAIJ, 25863c896bc6SHong Zhang MatCopy_MPIBAIJ, 2587d519adbfSMatthew Knepley /*44*/ 0, 2588cc2dc46cSBarry Smith MatScale_MPIBAIJ, 2589cc2dc46cSBarry Smith 0, 2590cc2dc46cSBarry Smith 0, 2591cc2dc46cSBarry Smith 0, 259241c166b1SJed Brown /*49*/ MatSetBlockSize_MPIBAIJ, 2593cc2dc46cSBarry Smith 0, 2594cc2dc46cSBarry Smith 0, 2595cc2dc46cSBarry Smith 0, 2596cc2dc46cSBarry Smith 0, 2597f6d58c54SBarry Smith /*54*/ MatFDColoringCreate_MPIBAIJ, 2598cc2dc46cSBarry Smith 0, 2599cc2dc46cSBarry Smith MatSetUnfactored_MPIBAIJ, 260082094794SBarry Smith MatPermute_MPIBAIJ, 2601cc2dc46cSBarry Smith MatSetValuesBlocked_MPIBAIJ, 2602d519adbfSMatthew Knepley /*59*/ MatGetSubMatrix_MPIBAIJ, 2603f14a1c24SBarry Smith MatDestroy_MPIBAIJ, 2604f14a1c24SBarry Smith MatView_MPIBAIJ, 2605357abbc8SBarry Smith 0, 26067843d17aSBarry Smith 0, 2607d519adbfSMatthew Knepley /*64*/ 0, 26087843d17aSBarry Smith 0, 26097843d17aSBarry Smith 0, 26107843d17aSBarry Smith 0, 26117843d17aSBarry Smith 0, 2612d519adbfSMatthew Knepley /*69*/ MatGetRowMaxAbs_MPIBAIJ, 26137843d17aSBarry Smith 0, 261497304618SKris Buschelman 0, 261597304618SKris Buschelman 0, 261697304618SKris Buschelman 0, 2617d519adbfSMatthew Knepley /*74*/ 0, 2618f6d58c54SBarry Smith MatFDColoringApply_BAIJ, 261997304618SKris Buschelman 0, 262097304618SKris Buschelman 0, 262197304618SKris Buschelman 0, 2622d519adbfSMatthew Knepley /*79*/ 0, 262397304618SKris Buschelman 0, 262497304618SKris Buschelman 0, 262597304618SKris Buschelman 0, 26265bba2384SShri Abhyankar MatLoad_MPIBAIJ, 2627d519adbfSMatthew Knepley /*84*/ 0, 2628865e5f61SKris Buschelman 0, 2629865e5f61SKris Buschelman 0, 2630865e5f61SKris Buschelman 0, 2631865e5f61SKris Buschelman 0, 2632d519adbfSMatthew Knepley /*89*/ 0, 2633865e5f61SKris Buschelman 0, 2634865e5f61SKris Buschelman 0, 2635865e5f61SKris Buschelman 0, 2636865e5f61SKris Buschelman 0, 2637d519adbfSMatthew Knepley /*94*/ 0, 2638865e5f61SKris Buschelman 0, 2639865e5f61SKris Buschelman 0, 264099cafbc1SBarry Smith 0, 264199cafbc1SBarry Smith 0, 2642d519adbfSMatthew Knepley /*99*/ 0, 264399cafbc1SBarry Smith 0, 264499cafbc1SBarry Smith 0, 264599cafbc1SBarry Smith 0, 264699cafbc1SBarry Smith 0, 2647d519adbfSMatthew Knepley /*104*/0, 264899cafbc1SBarry Smith MatRealPart_MPIBAIJ, 26498c7482ecSBarry Smith MatImaginaryPart_MPIBAIJ, 26508c7482ecSBarry Smith 0, 26518c7482ecSBarry Smith 0, 2652d519adbfSMatthew Knepley /*109*/0, 26538c7482ecSBarry Smith 0, 26548c7482ecSBarry Smith 0, 26558c7482ecSBarry Smith 0, 26568c7482ecSBarry Smith 0, 2657f6d58c54SBarry Smith /*114*/MatGetSeqNonzerostructure_MPIBAIJ, 26588c7482ecSBarry Smith 0, 26594683f7a4SShri Abhyankar MatGetGhosts_MPIBAIJ, 26604683f7a4SShri Abhyankar 0, 26614683f7a4SShri Abhyankar 0, 26624683f7a4SShri Abhyankar /*119*/0, 26634683f7a4SShri Abhyankar 0, 26644683f7a4SShri Abhyankar 0, 26655bba2384SShri Abhyankar 0 26668c7482ecSBarry Smith }; 266779bdfe76SSatish Balay 2668e18c124aSSatish Balay EXTERN_C_BEGIN 26694a2ae208SSatish Balay #undef __FUNCT__ 26704a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonalBlock_MPIBAIJ" 2671be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatGetDiagonalBlock_MPIBAIJ(Mat A,PetscTruth *iscopy,MatReuse reuse,Mat *a) 26725ef9f2a5SBarry Smith { 26735ef9f2a5SBarry Smith PetscFunctionBegin; 26745ef9f2a5SBarry Smith *a = ((Mat_MPIBAIJ *)A->data)->A; 26755ef9f2a5SBarry Smith *iscopy = PETSC_FALSE; 26765ef9f2a5SBarry Smith PetscFunctionReturn(0); 26775ef9f2a5SBarry Smith } 2678e18c124aSSatish Balay EXTERN_C_END 267979bdfe76SSatish Balay 2680273d9f13SBarry Smith EXTERN_C_BEGIN 2681f69a0ea3SMatthew Knepley extern PetscErrorCode PETSCMAT_DLLEXPORT MatConvert_MPIBAIJ_MPISBAIJ(Mat, MatType,MatReuse,Mat*); 2682d94109b8SHong Zhang EXTERN_C_END 2683d94109b8SHong Zhang 2684b8d659d7SLisandro Dalcin EXTERN_C_BEGIN 2685aac34f13SBarry Smith #undef __FUNCT__ 2686aac34f13SBarry Smith #define __FUNCT__ "MatMPIBAIJSetPreallocationCSR_MPIBAIJ" 2687cf12db73SBarry Smith PetscErrorCode MatMPIBAIJSetPreallocationCSR_MPIBAIJ(Mat B,PetscInt bs,const PetscInt ii[],const PetscInt jj[],const PetscScalar V[]) 2688aac34f13SBarry Smith { 2689b8d659d7SLisandro Dalcin PetscInt m,rstart,cstart,cend; 2690b8d659d7SLisandro Dalcin PetscInt i,j,d,nz,nz_max=0,*d_nnz=0,*o_nnz=0; 2691b8d659d7SLisandro Dalcin const PetscInt *JJ=0; 2692b8d659d7SLisandro Dalcin PetscScalar *values=0; 2693aac34f13SBarry Smith PetscErrorCode ierr; 2694aac34f13SBarry Smith 2695aac34f13SBarry Smith PetscFunctionBegin; 2696b8d659d7SLisandro Dalcin 269765e19b50SBarry Smith if (bs < 1) SETERRQ1(((PetscObject)B)->comm,PETSC_ERR_ARG_OUTOFRANGE,"Invalid block size specified, must be positive but it is %D",bs); 269826283091SBarry Smith ierr = PetscLayoutSetBlockSize(B->rmap,bs);CHKERRQ(ierr); 269926283091SBarry Smith ierr = PetscLayoutSetBlockSize(B->cmap,bs);CHKERRQ(ierr); 270026283091SBarry Smith ierr = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr); 270126283091SBarry Smith ierr = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr); 2702d0f46423SBarry Smith m = B->rmap->n/bs; 2703d0f46423SBarry Smith rstart = B->rmap->rstart/bs; 2704d0f46423SBarry Smith cstart = B->cmap->rstart/bs; 2705d0f46423SBarry Smith cend = B->cmap->rend/bs; 2706b8d659d7SLisandro Dalcin 2707e32f2f54SBarry Smith if (ii[0]) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"ii[0] must be 0 but it is %D",ii[0]); 2708fca92195SBarry Smith ierr = PetscMalloc2(m,PetscInt,&d_nnz,m,PetscInt,&o_nnz);CHKERRQ(ierr); 2709aac34f13SBarry Smith for (i=0; i<m; i++) { 2710cf12db73SBarry Smith nz = ii[i+1] - ii[i]; 2711e32f2f54SBarry Smith if (nz < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Local row %D has a negative number of columns %D",i,nz); 2712b8d659d7SLisandro Dalcin nz_max = PetscMax(nz_max,nz); 2713cf12db73SBarry Smith JJ = jj + ii[i]; 2714b8d659d7SLisandro Dalcin for (j=0; j<nz; j++) { 2715aac34f13SBarry Smith if (*JJ >= cstart) break; 2716aac34f13SBarry Smith JJ++; 2717aac34f13SBarry Smith } 2718aac34f13SBarry Smith d = 0; 2719b8d659d7SLisandro Dalcin for (; j<nz; j++) { 2720aac34f13SBarry Smith if (*JJ++ >= cend) break; 2721aac34f13SBarry Smith d++; 2722aac34f13SBarry Smith } 2723aac34f13SBarry Smith d_nnz[i] = d; 2724b8d659d7SLisandro Dalcin o_nnz[i] = nz - d; 2725aac34f13SBarry Smith } 2726aac34f13SBarry Smith ierr = MatMPIBAIJSetPreallocation(B,bs,0,d_nnz,0,o_nnz);CHKERRQ(ierr); 2727fca92195SBarry Smith ierr = PetscFree2(d_nnz,o_nnz);CHKERRQ(ierr); 2728aac34f13SBarry Smith 2729b8d659d7SLisandro Dalcin values = (PetscScalar*)V; 2730b8d659d7SLisandro Dalcin if (!values) { 2731fca92195SBarry Smith ierr = PetscMalloc(bs*bs*nz_max*sizeof(PetscScalar),&values);CHKERRQ(ierr); 2732b8d659d7SLisandro Dalcin ierr = PetscMemzero(values,bs*bs*nz_max*sizeof(PetscScalar));CHKERRQ(ierr); 2733b8d659d7SLisandro Dalcin } 2734b8d659d7SLisandro Dalcin for (i=0; i<m; i++) { 2735b8d659d7SLisandro Dalcin PetscInt row = i + rstart; 2736cf12db73SBarry Smith PetscInt ncols = ii[i+1] - ii[i]; 2737cf12db73SBarry Smith const PetscInt *icols = jj + ii[i]; 2738cf12db73SBarry Smith const PetscScalar *svals = values + (V ? (bs*bs*ii[i]) : 0); 2739b8d659d7SLisandro Dalcin ierr = MatSetValuesBlocked_MPIBAIJ(B,1,&row,ncols,icols,svals,INSERT_VALUES);CHKERRQ(ierr); 2740aac34f13SBarry Smith } 2741aac34f13SBarry Smith 2742b8d659d7SLisandro Dalcin if (!V) { ierr = PetscFree(values);CHKERRQ(ierr); } 2743aac34f13SBarry Smith ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 2744aac34f13SBarry Smith ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 2745aac34f13SBarry Smith 2746aac34f13SBarry Smith PetscFunctionReturn(0); 2747aac34f13SBarry Smith } 2748b8d659d7SLisandro Dalcin EXTERN_C_END 2749aac34f13SBarry Smith 2750aac34f13SBarry Smith #undef __FUNCT__ 2751aac34f13SBarry Smith #define __FUNCT__ "MatMPIBAIJSetPreallocationCSR" 2752aac34f13SBarry Smith /*@C 2753aac34f13SBarry Smith MatMPIBAIJSetPreallocationCSR - Allocates memory for a sparse parallel matrix in AIJ format 2754aac34f13SBarry Smith (the default parallel PETSc format). 2755aac34f13SBarry Smith 2756aac34f13SBarry Smith Collective on MPI_Comm 2757aac34f13SBarry Smith 2758aac34f13SBarry Smith Input Parameters: 2759aac34f13SBarry Smith + A - the matrix 2760aac34f13SBarry Smith . i - the indices into j for the start of each local row (starts with zero) 2761aac34f13SBarry Smith . j - the column indices for each local row (starts with zero) these must be sorted for each row 2762aac34f13SBarry Smith - v - optional values in the matrix 2763aac34f13SBarry Smith 2764aac34f13SBarry Smith Level: developer 2765aac34f13SBarry Smith 2766aac34f13SBarry Smith .keywords: matrix, aij, compressed row, sparse, parallel 2767aac34f13SBarry Smith 2768aac34f13SBarry Smith .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatMPIBAIJSetPreallocation(), MatCreateMPIAIJ(), MPIAIJ 2769aac34f13SBarry Smith @*/ 2770be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPIBAIJSetPreallocationCSR(Mat B,PetscInt bs,const PetscInt i[],const PetscInt j[], const PetscScalar v[]) 2771aac34f13SBarry Smith { 2772aac34f13SBarry Smith PetscErrorCode ierr,(*f)(Mat,PetscInt,const PetscInt[],const PetscInt[],const PetscScalar[]); 2773aac34f13SBarry Smith 2774aac34f13SBarry Smith PetscFunctionBegin; 2775aac34f13SBarry Smith ierr = PetscObjectQueryFunction((PetscObject)B,"MatMPIBAIJSetPreallocationCSR_C",(void (**)(void))&f);CHKERRQ(ierr); 2776aac34f13SBarry Smith if (f) { 2777aac34f13SBarry Smith ierr = (*f)(B,bs,i,j,v);CHKERRQ(ierr); 2778aac34f13SBarry Smith } 2779aac34f13SBarry Smith PetscFunctionReturn(0); 2780aac34f13SBarry Smith } 2781aac34f13SBarry Smith 2782d94109b8SHong Zhang EXTERN_C_BEGIN 27834a2ae208SSatish Balay #undef __FUNCT__ 2784a23d5eceSKris Buschelman #define __FUNCT__ "MatMPIBAIJSetPreallocation_MPIBAIJ" 2785be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPIBAIJSetPreallocation_MPIBAIJ(Mat B,PetscInt bs,PetscInt d_nz,PetscInt *d_nnz,PetscInt o_nz,PetscInt *o_nnz) 2786a23d5eceSKris Buschelman { 2787a23d5eceSKris Buschelman Mat_MPIBAIJ *b; 2788dfbe8321SBarry Smith PetscErrorCode ierr; 2789db4efbfdSBarry Smith PetscInt i, newbs = PetscAbs(bs); 2790a23d5eceSKris Buschelman 2791a23d5eceSKris Buschelman PetscFunctionBegin; 2792db4efbfdSBarry Smith if (bs < 0) { 27937adad957SLisandro Dalcin ierr = PetscOptionsBegin(((PetscObject)B)->comm,((PetscObject)B)->prefix,"Options for MPIBAIJ matrix","Mat");CHKERRQ(ierr); 2794db4efbfdSBarry Smith ierr = PetscOptionsInt("-mat_block_size","Set the blocksize used to store the matrix","MatMPIBAIJSetPreallocation",newbs,&newbs,PETSC_NULL);CHKERRQ(ierr); 27958c07d4e3SBarry Smith ierr = PetscOptionsEnd();CHKERRQ(ierr); 2796db4efbfdSBarry Smith bs = PetscAbs(bs); 2797db4efbfdSBarry Smith } 2798e7e72b3dSBarry Smith if ((d_nnz || o_nnz) && newbs != bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Cannot change blocksize from command line if setting d_nnz or o_nnz"); 2799db4efbfdSBarry Smith bs = newbs; 2800db4efbfdSBarry Smith 2801a23d5eceSKris Buschelman 2802e7e72b3dSBarry Smith if (bs < 1) SETERRQ(((PetscObject)B)->comm,PETSC_ERR_ARG_OUTOFRANGE,"Invalid block size specified, must be positive"); 2803a23d5eceSKris Buschelman if (d_nz == PETSC_DEFAULT || d_nz == PETSC_DECIDE) d_nz = 5; 2804a23d5eceSKris Buschelman if (o_nz == PETSC_DEFAULT || o_nz == PETSC_DECIDE) o_nz = 2; 2805e32f2f54SBarry Smith if (d_nz < 0) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"d_nz cannot be less than 0: value %D",d_nz); 2806e32f2f54SBarry Smith if (o_nz < 0) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"o_nz cannot be less than 0: value %D",o_nz); 2807899cda47SBarry Smith 280826283091SBarry Smith ierr = PetscLayoutSetBlockSize(B->rmap,bs);CHKERRQ(ierr); 280926283091SBarry Smith ierr = PetscLayoutSetBlockSize(B->cmap,bs);CHKERRQ(ierr); 281026283091SBarry Smith ierr = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr); 281126283091SBarry Smith ierr = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr); 2812899cda47SBarry Smith 2813a23d5eceSKris Buschelman if (d_nnz) { 2814d0f46423SBarry Smith for (i=0; i<B->rmap->n/bs; i++) { 2815e32f2f54SBarry Smith if (d_nnz[i] < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"d_nnz cannot be less than -1: local row %D value %D",i,d_nnz[i]); 2816a23d5eceSKris Buschelman } 2817a23d5eceSKris Buschelman } 2818a23d5eceSKris Buschelman if (o_nnz) { 2819d0f46423SBarry Smith for (i=0; i<B->rmap->n/bs; i++) { 2820e32f2f54SBarry Smith if (o_nnz[i] < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"o_nnz cannot be less than -1: local row %D value %D",i,o_nnz[i]); 2821a23d5eceSKris Buschelman } 2822a23d5eceSKris Buschelman } 2823a23d5eceSKris Buschelman 2824a23d5eceSKris Buschelman b = (Mat_MPIBAIJ*)B->data; 2825a23d5eceSKris Buschelman b->bs2 = bs*bs; 2826d0f46423SBarry Smith b->mbs = B->rmap->n/bs; 2827d0f46423SBarry Smith b->nbs = B->cmap->n/bs; 2828d0f46423SBarry Smith b->Mbs = B->rmap->N/bs; 2829d0f46423SBarry Smith b->Nbs = B->cmap->N/bs; 2830a23d5eceSKris Buschelman 2831a23d5eceSKris Buschelman for (i=0; i<=b->size; i++) { 2832d0f46423SBarry Smith b->rangebs[i] = B->rmap->range[i]/bs; 2833a23d5eceSKris Buschelman } 2834d0f46423SBarry Smith b->rstartbs = B->rmap->rstart/bs; 2835d0f46423SBarry Smith b->rendbs = B->rmap->rend/bs; 2836d0f46423SBarry Smith b->cstartbs = B->cmap->rstart/bs; 2837d0f46423SBarry Smith b->cendbs = B->cmap->rend/bs; 2838a23d5eceSKris Buschelman 2839526dfc15SBarry Smith if (!B->preallocated) { 2840f69a0ea3SMatthew Knepley ierr = MatCreate(PETSC_COMM_SELF,&b->A);CHKERRQ(ierr); 2841d0f46423SBarry Smith ierr = MatSetSizes(b->A,B->rmap->n,B->cmap->n,B->rmap->n,B->cmap->n);CHKERRQ(ierr); 28429c097c71SKris Buschelman ierr = MatSetType(b->A,MATSEQBAIJ);CHKERRQ(ierr); 284352e6d16bSBarry Smith ierr = PetscLogObjectParent(B,b->A);CHKERRQ(ierr); 2844f69a0ea3SMatthew Knepley ierr = MatCreate(PETSC_COMM_SELF,&b->B);CHKERRQ(ierr); 2845d0f46423SBarry Smith ierr = MatSetSizes(b->B,B->rmap->n,B->cmap->N,B->rmap->n,B->cmap->N);CHKERRQ(ierr); 28469c097c71SKris Buschelman ierr = MatSetType(b->B,MATSEQBAIJ);CHKERRQ(ierr); 284752e6d16bSBarry Smith ierr = PetscLogObjectParent(B,b->B);CHKERRQ(ierr); 28487adad957SLisandro Dalcin ierr = MatStashCreate_Private(((PetscObject)B)->comm,bs,&B->bstash);CHKERRQ(ierr); 2849526dfc15SBarry Smith } 2850a23d5eceSKris Buschelman 2851526dfc15SBarry Smith ierr = MatSeqBAIJSetPreallocation(b->A,bs,d_nz,d_nnz);CHKERRQ(ierr); 2852526dfc15SBarry Smith ierr = MatSeqBAIJSetPreallocation(b->B,bs,o_nz,o_nnz);CHKERRQ(ierr); 2853526dfc15SBarry Smith B->preallocated = PETSC_TRUE; 2854a23d5eceSKris Buschelman PetscFunctionReturn(0); 2855a23d5eceSKris Buschelman } 2856a23d5eceSKris Buschelman EXTERN_C_END 2857a23d5eceSKris Buschelman 2858a23d5eceSKris Buschelman EXTERN_C_BEGIN 2859be1d678aSKris Buschelman EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatDiagonalScaleLocal_MPIBAIJ(Mat,Vec); 2860be1d678aSKris Buschelman EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatSetHashTableFactor_MPIBAIJ(Mat,PetscReal); 286192b32695SKris Buschelman EXTERN_C_END 28625bf65638SKris Buschelman 286382094794SBarry Smith 286482094794SBarry Smith EXTERN_C_BEGIN 286582094794SBarry Smith #undef __FUNCT__ 286682094794SBarry Smith #define __FUNCT__ "MatConvert_MPIBAIJ_MPIAdj" 286782094794SBarry Smith PetscErrorCode PETSCMAT_DLLEXPORT MatConvert_MPIBAIJ_MPIAdj(Mat B, const MatType newtype,MatReuse reuse,Mat *adj) 286882094794SBarry Smith { 286982094794SBarry Smith Mat_MPIBAIJ *b = (Mat_MPIBAIJ*)B->data; 287082094794SBarry Smith PetscErrorCode ierr; 287182094794SBarry Smith Mat_SeqBAIJ *d = (Mat_SeqBAIJ*) b->A->data,*o = (Mat_SeqBAIJ*) b->B->data; 287282094794SBarry Smith PetscInt M = B->rmap->n/B->rmap->bs,i,*ii,*jj,cnt,j,k,rstart = B->rmap->rstart/B->rmap->bs; 287382094794SBarry Smith const PetscInt *id = d->i, *jd = d->j, *io = o->i, *jo = o->j, *garray = b->garray; 287482094794SBarry Smith 287582094794SBarry Smith PetscFunctionBegin; 287682094794SBarry Smith ierr = PetscMalloc((M+1)*sizeof(PetscInt),&ii);CHKERRQ(ierr); 287782094794SBarry Smith ii[0] = 0; 287882094794SBarry Smith CHKMEMQ; 287982094794SBarry Smith for (i=0; i<M; i++) { 2880e32f2f54SBarry Smith if ((id[i+1] - id[i]) < 0) SETERRQ3(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Indices wrong %D %D %D",i,id[i],id[i+1]); 2881e32f2f54SBarry Smith if ((io[i+1] - io[i]) < 0) SETERRQ3(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Indices wrong %D %D %D",i,io[i],io[i+1]); 288282094794SBarry Smith ii[i+1] = ii[i] + id[i+1] - id[i] + io[i+1] - io[i]; 288382094794SBarry Smith /* remove one from count of matrix has diagonal */ 288482094794SBarry Smith for (j=id[i]; j<id[i+1]; j++) { 288582094794SBarry Smith if (jd[j] == i) {ii[i+1]--;break;} 288682094794SBarry Smith } 288782094794SBarry Smith CHKMEMQ; 288882094794SBarry Smith } 288982094794SBarry Smith ierr = PetscMalloc(ii[M]*sizeof(PetscInt),&jj);CHKERRQ(ierr); 289082094794SBarry Smith cnt = 0; 289182094794SBarry Smith for (i=0; i<M; i++) { 289282094794SBarry Smith for (j=io[i]; j<io[i+1]; j++) { 289382094794SBarry Smith if (garray[jo[j]] > rstart) break; 289482094794SBarry Smith jj[cnt++] = garray[jo[j]]; 289582094794SBarry Smith CHKMEMQ; 289682094794SBarry Smith } 289782094794SBarry Smith for (k=id[i]; k<id[i+1]; k++) { 289882094794SBarry Smith if (jd[k] != i) { 289982094794SBarry Smith jj[cnt++] = rstart + jd[k]; 290082094794SBarry Smith CHKMEMQ; 290182094794SBarry Smith } 290282094794SBarry Smith } 290382094794SBarry Smith for (;j<io[i+1]; j++) { 290482094794SBarry Smith jj[cnt++] = garray[jo[j]]; 290582094794SBarry Smith CHKMEMQ; 290682094794SBarry Smith } 290782094794SBarry Smith } 290882094794SBarry Smith ierr = MatCreateMPIAdj(((PetscObject)B)->comm,M,B->cmap->N/B->rmap->bs,ii,jj,PETSC_NULL,adj);CHKERRQ(ierr); 290982094794SBarry Smith PetscFunctionReturn(0); 291082094794SBarry Smith } 2911dbf0e21dSBarry Smith EXTERN_C_END 291282094794SBarry Smith 2913450b117fSShri Abhyankar EXTERN_C_BEGIN 2914450b117fSShri Abhyankar #if defined(PETSC_HAVE_MUMPS) 2915bccb9932SShri Abhyankar extern PetscErrorCode MatGetFactor_baij_mumps(Mat,MatFactorType,Mat*); 2916450b117fSShri Abhyankar #endif 2917450b117fSShri Abhyankar EXTERN_C_END 2918450b117fSShri Abhyankar 29190bad9183SKris Buschelman /*MC 2920fafad747SKris Buschelman MATMPIBAIJ - MATMPIBAIJ = "mpibaij" - A matrix type to be used for distributed block sparse matrices. 29210bad9183SKris Buschelman 29220bad9183SKris Buschelman Options Database Keys: 29238c07d4e3SBarry Smith + -mat_type mpibaij - sets the matrix type to "mpibaij" during a call to MatSetFromOptions() 29248c07d4e3SBarry Smith . -mat_block_size <bs> - set the blocksize used to store the matrix 29258c07d4e3SBarry Smith - -mat_use_hash_table <fact> 29260bad9183SKris Buschelman 29270bad9183SKris Buschelman Level: beginner 29280bad9183SKris Buschelman 29290bad9183SKris Buschelman .seealso: MatCreateMPIBAIJ 29300bad9183SKris Buschelman M*/ 29310bad9183SKris Buschelman 293292b32695SKris Buschelman EXTERN_C_BEGIN 2933a23d5eceSKris Buschelman #undef __FUNCT__ 29344a2ae208SSatish Balay #define __FUNCT__ "MatCreate_MPIBAIJ" 2935be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreate_MPIBAIJ(Mat B) 2936273d9f13SBarry Smith { 2937273d9f13SBarry Smith Mat_MPIBAIJ *b; 2938dfbe8321SBarry Smith PetscErrorCode ierr; 2939273d9f13SBarry Smith PetscTruth flg; 2940273d9f13SBarry Smith 2941273d9f13SBarry Smith PetscFunctionBegin; 294238f2d2fdSLisandro Dalcin ierr = PetscNewLog(B,Mat_MPIBAIJ,&b);CHKERRQ(ierr); 294382502324SSatish Balay B->data = (void*)b; 294482502324SSatish Balay 2945085a36d4SBarry Smith 2946273d9f13SBarry Smith ierr = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr); 2947273d9f13SBarry Smith B->mapping = 0; 2948273d9f13SBarry Smith B->assembled = PETSC_FALSE; 2949273d9f13SBarry Smith 2950273d9f13SBarry Smith B->insertmode = NOT_SET_VALUES; 29517adad957SLisandro Dalcin ierr = MPI_Comm_rank(((PetscObject)B)->comm,&b->rank);CHKERRQ(ierr); 29527adad957SLisandro Dalcin ierr = MPI_Comm_size(((PetscObject)B)->comm,&b->size);CHKERRQ(ierr); 2953273d9f13SBarry Smith 2954273d9f13SBarry Smith /* build local table of row and column ownerships */ 2955899cda47SBarry Smith ierr = PetscMalloc((b->size+1)*sizeof(PetscInt),&b->rangebs);CHKERRQ(ierr); 2956273d9f13SBarry Smith 2957273d9f13SBarry Smith /* build cache for off array entries formed */ 29587adad957SLisandro Dalcin ierr = MatStashCreate_Private(((PetscObject)B)->comm,1,&B->stash);CHKERRQ(ierr); 2959273d9f13SBarry Smith b->donotstash = PETSC_FALSE; 2960273d9f13SBarry Smith b->colmap = PETSC_NULL; 2961273d9f13SBarry Smith b->garray = PETSC_NULL; 2962273d9f13SBarry Smith b->roworiented = PETSC_TRUE; 2963273d9f13SBarry Smith 2964273d9f13SBarry Smith /* stuff used in block assembly */ 2965273d9f13SBarry Smith b->barray = 0; 2966273d9f13SBarry Smith 2967273d9f13SBarry Smith /* stuff used for matrix vector multiply */ 2968273d9f13SBarry Smith b->lvec = 0; 2969273d9f13SBarry Smith b->Mvctx = 0; 2970273d9f13SBarry Smith 2971273d9f13SBarry Smith /* stuff for MatGetRow() */ 2972273d9f13SBarry Smith b->rowindices = 0; 2973273d9f13SBarry Smith b->rowvalues = 0; 2974273d9f13SBarry Smith b->getrowactive = PETSC_FALSE; 2975273d9f13SBarry Smith 2976273d9f13SBarry Smith /* hash table stuff */ 2977273d9f13SBarry Smith b->ht = 0; 2978273d9f13SBarry Smith b->hd = 0; 2979273d9f13SBarry Smith b->ht_size = 0; 2980273d9f13SBarry Smith b->ht_flag = PETSC_FALSE; 2981273d9f13SBarry Smith b->ht_fact = 0; 2982273d9f13SBarry Smith b->ht_total_ct = 0; 2983273d9f13SBarry Smith b->ht_insert_ct = 0; 2984273d9f13SBarry Smith 29857adad957SLisandro Dalcin ierr = PetscOptionsBegin(((PetscObject)B)->comm,PETSC_NULL,"Options for loading MPIBAIJ matrix 1","Mat");CHKERRQ(ierr); 29868c07d4e3SBarry Smith ierr = PetscOptionsTruth("-mat_use_hash_table","Use hash table to save memory in constructing matrix","MatSetOption",PETSC_FALSE,&flg,PETSC_NULL);CHKERRQ(ierr); 2987273d9f13SBarry Smith if (flg) { 2988f6275e2eSBarry Smith PetscReal fact = 1.39; 29894e0d8c25SBarry Smith ierr = MatSetOption(B,MAT_USE_HASH_TABLE,PETSC_TRUE);CHKERRQ(ierr); 29908c07d4e3SBarry Smith ierr = PetscOptionsReal("-mat_use_hash_table","Use hash table factor","MatMPIBAIJSetHashTableFactor",fact,&fact,PETSC_NULL);CHKERRQ(ierr); 2991273d9f13SBarry Smith if (fact <= 1.0) fact = 1.39; 2992273d9f13SBarry Smith ierr = MatMPIBAIJSetHashTableFactor(B,fact);CHKERRQ(ierr); 29931e2582c4SBarry Smith ierr = PetscInfo1(B,"Hash table Factor used %5.2f\n",fact);CHKERRQ(ierr); 2994273d9f13SBarry Smith } 29958c07d4e3SBarry Smith ierr = PetscOptionsEnd();CHKERRQ(ierr); 29968c07d4e3SBarry Smith 2997450b117fSShri Abhyankar #if defined(PETSC_HAVE_MUMPS) 2998bccb9932SShri Abhyankar ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetFactor_mumps_C", "MatGetFactor_baij_mumps",MatGetFactor_baij_mumps);CHKERRQ(ierr); 2999450b117fSShri Abhyankar #endif 300082094794SBarry Smith ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatConvert_mpibaij_mpiadj_C", 300182094794SBarry Smith "MatConvert_MPIBAIJ_MPIAdj", 300282094794SBarry Smith MatConvert_MPIBAIJ_MPIAdj);CHKERRQ(ierr); 3003273d9f13SBarry Smith ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatStoreValues_C", 3004273d9f13SBarry Smith "MatStoreValues_MPIBAIJ", 3005273d9f13SBarry Smith MatStoreValues_MPIBAIJ);CHKERRQ(ierr); 3006273d9f13SBarry Smith ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatRetrieveValues_C", 3007273d9f13SBarry Smith "MatRetrieveValues_MPIBAIJ", 3008273d9f13SBarry Smith MatRetrieveValues_MPIBAIJ);CHKERRQ(ierr); 3009273d9f13SBarry Smith ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetDiagonalBlock_C", 3010273d9f13SBarry Smith "MatGetDiagonalBlock_MPIBAIJ", 3011273d9f13SBarry Smith MatGetDiagonalBlock_MPIBAIJ);CHKERRQ(ierr); 3012a23d5eceSKris Buschelman ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatMPIBAIJSetPreallocation_C", 3013a23d5eceSKris Buschelman "MatMPIBAIJSetPreallocation_MPIBAIJ", 3014a23d5eceSKris Buschelman MatMPIBAIJSetPreallocation_MPIBAIJ);CHKERRQ(ierr); 3015aac34f13SBarry Smith ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatMPIBAIJSetPreallocationCSR_C", 301644ec7894SLisandro Dalcin "MatMPIBAIJSetPreallocationCSR_MPIBAIJ", 3017aac34f13SBarry Smith MatMPIBAIJSetPreallocationCSR_MPIBAIJ);CHKERRQ(ierr); 301892b32695SKris Buschelman ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatDiagonalScaleLocal_C", 301992b32695SKris Buschelman "MatDiagonalScaleLocal_MPIBAIJ", 302092b32695SKris Buschelman MatDiagonalScaleLocal_MPIBAIJ);CHKERRQ(ierr); 30215bf65638SKris Buschelman ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatSetHashTableFactor_C", 30225bf65638SKris Buschelman "MatSetHashTableFactor_MPIBAIJ", 30235bf65638SKris Buschelman MatSetHashTableFactor_MPIBAIJ);CHKERRQ(ierr); 302417667f90SBarry Smith ierr = PetscObjectChangeTypeName((PetscObject)B,MATMPIBAIJ);CHKERRQ(ierr); 3025273d9f13SBarry Smith PetscFunctionReturn(0); 3026273d9f13SBarry Smith } 3027273d9f13SBarry Smith EXTERN_C_END 3028273d9f13SBarry Smith 3029209238afSKris Buschelman /*MC 3030002d173eSKris Buschelman MATBAIJ - MATBAIJ = "baij" - A matrix type to be used for block sparse matrices. 3031209238afSKris Buschelman 3032209238afSKris Buschelman This matrix type is identical to MATSEQBAIJ when constructed with a single process communicator, 3033209238afSKris Buschelman and MATMPIBAIJ otherwise. 3034209238afSKris Buschelman 3035209238afSKris Buschelman Options Database Keys: 3036209238afSKris Buschelman . -mat_type baij - sets the matrix type to "baij" during a call to MatSetFromOptions() 3037209238afSKris Buschelman 3038209238afSKris Buschelman Level: beginner 3039209238afSKris Buschelman 3040aac34f13SBarry Smith .seealso: MatCreateMPIBAIJ(),MATSEQBAIJ,MATMPIBAIJ, MatMPIBAIJSetPreallocation(), MatMPIBAIJSetPreallocationCSR() 3041209238afSKris Buschelman M*/ 3042209238afSKris Buschelman 3043209238afSKris Buschelman EXTERN_C_BEGIN 3044209238afSKris Buschelman #undef __FUNCT__ 3045209238afSKris Buschelman #define __FUNCT__ "MatCreate_BAIJ" 3046be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreate_BAIJ(Mat A) 3047dfbe8321SBarry Smith { 30486849ba73SBarry Smith PetscErrorCode ierr; 3049b24ad042SBarry Smith PetscMPIInt size; 3050209238afSKris Buschelman 3051209238afSKris Buschelman PetscFunctionBegin; 30527adad957SLisandro Dalcin ierr = MPI_Comm_size(((PetscObject)A)->comm,&size);CHKERRQ(ierr); 3053209238afSKris Buschelman if (size == 1) { 3054209238afSKris Buschelman ierr = MatSetType(A,MATSEQBAIJ);CHKERRQ(ierr); 3055209238afSKris Buschelman } else { 3056209238afSKris Buschelman ierr = MatSetType(A,MATMPIBAIJ);CHKERRQ(ierr); 3057209238afSKris Buschelman } 3058209238afSKris Buschelman PetscFunctionReturn(0); 3059209238afSKris Buschelman } 3060209238afSKris Buschelman EXTERN_C_END 3061209238afSKris Buschelman 30624a2ae208SSatish Balay #undef __FUNCT__ 30634a2ae208SSatish Balay #define __FUNCT__ "MatMPIBAIJSetPreallocation" 3064273d9f13SBarry Smith /*@C 3065aac34f13SBarry Smith MatMPIBAIJSetPreallocation - Allocates memory for a sparse parallel matrix in block AIJ format 3066273d9f13SBarry Smith (block compressed row). For good matrix assembly performance 3067273d9f13SBarry Smith the user should preallocate the matrix storage by setting the parameters 3068273d9f13SBarry Smith d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 3069273d9f13SBarry Smith performance can be increased by more than a factor of 50. 3070273d9f13SBarry Smith 3071273d9f13SBarry Smith Collective on Mat 3072273d9f13SBarry Smith 3073273d9f13SBarry Smith Input Parameters: 3074273d9f13SBarry Smith + A - the matrix 3075273d9f13SBarry Smith . bs - size of blockk 3076273d9f13SBarry Smith . d_nz - number of block nonzeros per block row in diagonal portion of local 3077273d9f13SBarry Smith submatrix (same for all local rows) 3078273d9f13SBarry Smith . d_nnz - array containing the number of block nonzeros in the various block rows 3079273d9f13SBarry Smith of the in diagonal portion of the local (possibly different for each block 3080273d9f13SBarry Smith row) or PETSC_NULL. You must leave room for the diagonal entry even if it is zero. 3081273d9f13SBarry Smith . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 3082273d9f13SBarry Smith submatrix (same for all local rows). 3083273d9f13SBarry Smith - o_nnz - array containing the number of nonzeros in the various block rows of the 3084273d9f13SBarry Smith off-diagonal portion of the local submatrix (possibly different for 3085273d9f13SBarry Smith each block row) or PETSC_NULL. 3086273d9f13SBarry Smith 308749a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 3088273d9f13SBarry Smith 3089273d9f13SBarry Smith Options Database Keys: 30908c07d4e3SBarry Smith + -mat_block_size - size of the blocks to use 30918c07d4e3SBarry Smith - -mat_use_hash_table <fact> 3092273d9f13SBarry Smith 3093273d9f13SBarry Smith Notes: 3094273d9f13SBarry Smith If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one processor 3095273d9f13SBarry Smith than it must be used on all processors that share the object for that argument. 3096273d9f13SBarry Smith 3097273d9f13SBarry Smith Storage Information: 3098273d9f13SBarry Smith For a square global matrix we define each processor's diagonal portion 3099273d9f13SBarry Smith to be its local rows and the corresponding columns (a square submatrix); 3100273d9f13SBarry Smith each processor's off-diagonal portion encompasses the remainder of the 3101273d9f13SBarry Smith local matrix (a rectangular submatrix). 3102273d9f13SBarry Smith 3103273d9f13SBarry Smith The user can specify preallocated storage for the diagonal part of 3104273d9f13SBarry Smith the local submatrix with either d_nz or d_nnz (not both). Set 3105273d9f13SBarry Smith d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic 3106273d9f13SBarry Smith memory allocation. Likewise, specify preallocated storage for the 3107273d9f13SBarry Smith off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 3108273d9f13SBarry Smith 3109273d9f13SBarry Smith Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 3110273d9f13SBarry Smith the figure below we depict these three local rows and all columns (0-11). 3111273d9f13SBarry Smith 3112273d9f13SBarry Smith .vb 3113273d9f13SBarry Smith 0 1 2 3 4 5 6 7 8 9 10 11 3114273d9f13SBarry Smith ------------------- 3115273d9f13SBarry Smith row 3 | o o o d d d o o o o o o 3116273d9f13SBarry Smith row 4 | o o o d d d o o o o o o 3117273d9f13SBarry Smith row 5 | o o o d d d o o o o o o 3118273d9f13SBarry Smith ------------------- 3119273d9f13SBarry Smith .ve 3120273d9f13SBarry Smith 3121273d9f13SBarry Smith Thus, any entries in the d locations are stored in the d (diagonal) 3122273d9f13SBarry Smith submatrix, and any entries in the o locations are stored in the 3123273d9f13SBarry Smith o (off-diagonal) submatrix. Note that the d and the o submatrices are 3124273d9f13SBarry Smith stored simply in the MATSEQBAIJ format for compressed row storage. 3125273d9f13SBarry Smith 3126273d9f13SBarry Smith Now d_nz should indicate the number of block nonzeros per row in the d matrix, 3127273d9f13SBarry Smith and o_nz should indicate the number of block nonzeros per row in the o matrix. 3128273d9f13SBarry Smith In general, for PDE problems in which most nonzeros are near the diagonal, 3129273d9f13SBarry Smith one expects d_nz >> o_nz. For large problems you MUST preallocate memory 3130273d9f13SBarry Smith or you will get TERRIBLE performance; see the users' manual chapter on 3131273d9f13SBarry Smith matrices. 3132273d9f13SBarry Smith 3133aa95bbe8SBarry Smith You can call MatGetInfo() to get information on how effective the preallocation was; 3134aa95bbe8SBarry Smith for example the fields mallocs,nz_allocated,nz_used,nz_unneeded; 3135aa95bbe8SBarry Smith You can also run with the option -info and look for messages with the string 3136aa95bbe8SBarry Smith malloc in them to see if additional memory allocation was needed. 3137aa95bbe8SBarry Smith 3138273d9f13SBarry Smith Level: intermediate 3139273d9f13SBarry Smith 3140273d9f13SBarry Smith .keywords: matrix, block, aij, compressed row, sparse, parallel 3141273d9f13SBarry Smith 3142aac34f13SBarry Smith .seealso: MatCreate(), MatCreateSeqBAIJ(), MatSetValues(), MatCreateMPIBAIJ(), MatMPIBAIJSetPreallocationCSR() 3143273d9f13SBarry Smith @*/ 3144be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPIBAIJSetPreallocation(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[]) 3145273d9f13SBarry Smith { 3146b24ad042SBarry Smith PetscErrorCode ierr,(*f)(Mat,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[]); 3147273d9f13SBarry Smith 3148273d9f13SBarry Smith PetscFunctionBegin; 3149a23d5eceSKris Buschelman ierr = PetscObjectQueryFunction((PetscObject)B,"MatMPIBAIJSetPreallocation_C",(void (**)(void))&f);CHKERRQ(ierr); 3150a23d5eceSKris Buschelman if (f) { 3151a23d5eceSKris Buschelman ierr = (*f)(B,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr); 3152273d9f13SBarry Smith } 3153273d9f13SBarry Smith PetscFunctionReturn(0); 3154273d9f13SBarry Smith } 3155273d9f13SBarry Smith 31564a2ae208SSatish Balay #undef __FUNCT__ 31574a2ae208SSatish Balay #define __FUNCT__ "MatCreateMPIBAIJ" 315879bdfe76SSatish Balay /*@C 315979bdfe76SSatish Balay MatCreateMPIBAIJ - Creates a sparse parallel matrix in block AIJ format 316079bdfe76SSatish Balay (block compressed row). For good matrix assembly performance 316179bdfe76SSatish Balay the user should preallocate the matrix storage by setting the parameters 316279bdfe76SSatish Balay d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 316379bdfe76SSatish Balay performance can be increased by more than a factor of 50. 316479bdfe76SSatish Balay 3165db81eaa0SLois Curfman McInnes Collective on MPI_Comm 3166db81eaa0SLois Curfman McInnes 316779bdfe76SSatish Balay Input Parameters: 3168db81eaa0SLois Curfman McInnes + comm - MPI communicator 316979bdfe76SSatish Balay . bs - size of blockk 317079bdfe76SSatish Balay . m - number of local rows (or PETSC_DECIDE to have calculated if M is given) 317192e8d321SLois Curfman McInnes This value should be the same as the local size used in creating the 317292e8d321SLois Curfman McInnes y vector for the matrix-vector product y = Ax. 317392e8d321SLois Curfman McInnes . n - number of local columns (or PETSC_DECIDE to have calculated if N is given) 317492e8d321SLois Curfman McInnes This value should be the same as the local size used in creating the 317592e8d321SLois Curfman McInnes x vector for the matrix-vector product y = Ax. 3176be79a94dSBarry Smith . M - number of global rows (or PETSC_DETERMINE to have calculated if m is given) 3177be79a94dSBarry Smith . N - number of global columns (or PETSC_DETERMINE to have calculated if n is given) 317847a75d0bSBarry Smith . d_nz - number of nonzero blocks per block row in diagonal portion of local 317979bdfe76SSatish Balay submatrix (same for all local rows) 318047a75d0bSBarry Smith . d_nnz - array containing the number of nonzero blocks in the various block rows 318192e8d321SLois Curfman McInnes of the in diagonal portion of the local (possibly different for each block 3182db81eaa0SLois Curfman McInnes row) or PETSC_NULL. You must leave room for the diagonal entry even if it is zero. 318347a75d0bSBarry Smith . o_nz - number of nonzero blocks per block row in the off-diagonal portion of local 318479bdfe76SSatish Balay submatrix (same for all local rows). 318547a75d0bSBarry Smith - o_nnz - array containing the number of nonzero blocks in the various block rows of the 318692e8d321SLois Curfman McInnes off-diagonal portion of the local submatrix (possibly different for 318792e8d321SLois Curfman McInnes each block row) or PETSC_NULL. 318879bdfe76SSatish Balay 318979bdfe76SSatish Balay Output Parameter: 319079bdfe76SSatish Balay . A - the matrix 319179bdfe76SSatish Balay 3192db81eaa0SLois Curfman McInnes Options Database Keys: 31938c07d4e3SBarry Smith + -mat_block_size - size of the blocks to use 31948c07d4e3SBarry Smith - -mat_use_hash_table <fact> 31953ffaccefSLois Curfman McInnes 3196175b88e8SBarry Smith It is recommended that one use the MatCreate(), MatSetType() and/or MatSetFromOptions(), 3197ae1d86c5SBarry Smith MatXXXXSetPreallocation() paradgm instead of this routine directly. 3198175b88e8SBarry Smith [MatXXXXSetPreallocation() is, for example, MatSeqAIJSetPreallocation] 3199175b88e8SBarry Smith 3200b259b22eSLois Curfman McInnes Notes: 320149a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 320249a6f317SBarry Smith 320347a75d0bSBarry Smith A nonzero block is any block that as 1 or more nonzeros in it 320447a75d0bSBarry Smith 320579bdfe76SSatish Balay The user MUST specify either the local or global matrix dimensions 320679bdfe76SSatish Balay (possibly both). 320779bdfe76SSatish Balay 3208be79a94dSBarry Smith If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one processor 3209be79a94dSBarry Smith than it must be used on all processors that share the object for that argument. 3210be79a94dSBarry Smith 321179bdfe76SSatish Balay Storage Information: 321279bdfe76SSatish Balay For a square global matrix we define each processor's diagonal portion 321379bdfe76SSatish Balay to be its local rows and the corresponding columns (a square submatrix); 321479bdfe76SSatish Balay each processor's off-diagonal portion encompasses the remainder of the 321579bdfe76SSatish Balay local matrix (a rectangular submatrix). 321679bdfe76SSatish Balay 321779bdfe76SSatish Balay The user can specify preallocated storage for the diagonal part of 321879bdfe76SSatish Balay the local submatrix with either d_nz or d_nnz (not both). Set 321979bdfe76SSatish Balay d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic 322079bdfe76SSatish Balay memory allocation. Likewise, specify preallocated storage for the 322179bdfe76SSatish Balay off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 322279bdfe76SSatish Balay 322379bdfe76SSatish Balay Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 322479bdfe76SSatish Balay the figure below we depict these three local rows and all columns (0-11). 322579bdfe76SSatish Balay 3226db81eaa0SLois Curfman McInnes .vb 3227db81eaa0SLois Curfman McInnes 0 1 2 3 4 5 6 7 8 9 10 11 3228db81eaa0SLois Curfman McInnes ------------------- 3229db81eaa0SLois Curfman McInnes row 3 | o o o d d d o o o o o o 3230db81eaa0SLois Curfman McInnes row 4 | o o o d d d o o o o o o 3231db81eaa0SLois Curfman McInnes row 5 | o o o d d d o o o o o o 3232db81eaa0SLois Curfman McInnes ------------------- 3233db81eaa0SLois Curfman McInnes .ve 323479bdfe76SSatish Balay 323579bdfe76SSatish Balay Thus, any entries in the d locations are stored in the d (diagonal) 323679bdfe76SSatish Balay submatrix, and any entries in the o locations are stored in the 323779bdfe76SSatish Balay o (off-diagonal) submatrix. Note that the d and the o submatrices are 323857b952d6SSatish Balay stored simply in the MATSEQBAIJ format for compressed row storage. 323979bdfe76SSatish Balay 3240d64ed03dSBarry Smith Now d_nz should indicate the number of block nonzeros per row in the d matrix, 3241d64ed03dSBarry Smith and o_nz should indicate the number of block nonzeros per row in the o matrix. 324279bdfe76SSatish Balay In general, for PDE problems in which most nonzeros are near the diagonal, 324392e8d321SLois Curfman McInnes one expects d_nz >> o_nz. For large problems you MUST preallocate memory 324492e8d321SLois Curfman McInnes or you will get TERRIBLE performance; see the users' manual chapter on 32456da5968aSLois Curfman McInnes matrices. 324679bdfe76SSatish Balay 3247027ccd11SLois Curfman McInnes Level: intermediate 3248027ccd11SLois Curfman McInnes 324992e8d321SLois Curfman McInnes .keywords: matrix, block, aij, compressed row, sparse, parallel 325079bdfe76SSatish Balay 3251aac34f13SBarry Smith .seealso: MatCreate(), MatCreateSeqBAIJ(), MatSetValues(), MatCreateMPIBAIJ(), MatMPIBAIJSetPreallocation(), MatMPIBAIJSetPreallocationCSR() 325279bdfe76SSatish Balay @*/ 3253be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreateMPIBAIJ(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[],Mat *A) 325479bdfe76SSatish Balay { 32556849ba73SBarry Smith PetscErrorCode ierr; 3256b24ad042SBarry Smith PetscMPIInt size; 325779bdfe76SSatish Balay 3258d64ed03dSBarry Smith PetscFunctionBegin; 3259f69a0ea3SMatthew Knepley ierr = MatCreate(comm,A);CHKERRQ(ierr); 3260f69a0ea3SMatthew Knepley ierr = MatSetSizes(*A,m,n,M,N);CHKERRQ(ierr); 3261d132466eSBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 3262273d9f13SBarry Smith if (size > 1) { 3263273d9f13SBarry Smith ierr = MatSetType(*A,MATMPIBAIJ);CHKERRQ(ierr); 3264273d9f13SBarry Smith ierr = MatMPIBAIJSetPreallocation(*A,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr); 3265273d9f13SBarry Smith } else { 3266273d9f13SBarry Smith ierr = MatSetType(*A,MATSEQBAIJ);CHKERRQ(ierr); 3267273d9f13SBarry Smith ierr = MatSeqBAIJSetPreallocation(*A,bs,d_nz,d_nnz);CHKERRQ(ierr); 32683914022bSBarry Smith } 32693a40ed3dSBarry Smith PetscFunctionReturn(0); 327079bdfe76SSatish Balay } 3271026e39d0SSatish Balay 32724a2ae208SSatish Balay #undef __FUNCT__ 32734a2ae208SSatish Balay #define __FUNCT__ "MatDuplicate_MPIBAIJ" 32746849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIBAIJ(Mat matin,MatDuplicateOption cpvalues,Mat *newmat) 32750ac07820SSatish Balay { 32760ac07820SSatish Balay Mat mat; 32770ac07820SSatish Balay Mat_MPIBAIJ *a,*oldmat = (Mat_MPIBAIJ*)matin->data; 3278dfbe8321SBarry Smith PetscErrorCode ierr; 3279b24ad042SBarry Smith PetscInt len=0; 32800ac07820SSatish Balay 3281d64ed03dSBarry Smith PetscFunctionBegin; 32820ac07820SSatish Balay *newmat = 0; 32837adad957SLisandro Dalcin ierr = MatCreate(((PetscObject)matin)->comm,&mat);CHKERRQ(ierr); 3284d0f46423SBarry Smith ierr = MatSetSizes(mat,matin->rmap->n,matin->cmap->n,matin->rmap->N,matin->cmap->N);CHKERRQ(ierr); 32857adad957SLisandro Dalcin ierr = MatSetType(mat,((PetscObject)matin)->type_name);CHKERRQ(ierr); 32861d5dac46SHong Zhang ierr = PetscMemcpy(mat->ops,matin->ops,sizeof(struct _MatOps));CHKERRQ(ierr); 32877fff6886SHong Zhang 3288d5f3da31SBarry Smith mat->factortype = matin->factortype; 3289273d9f13SBarry Smith mat->preallocated = PETSC_TRUE; 32900ac07820SSatish Balay mat->assembled = PETSC_TRUE; 32917fff6886SHong Zhang mat->insertmode = NOT_SET_VALUES; 32927fff6886SHong Zhang 3293273d9f13SBarry Smith a = (Mat_MPIBAIJ*)mat->data; 3294d0f46423SBarry Smith mat->rmap->bs = matin->rmap->bs; 32950ac07820SSatish Balay a->bs2 = oldmat->bs2; 32960ac07820SSatish Balay a->mbs = oldmat->mbs; 32970ac07820SSatish Balay a->nbs = oldmat->nbs; 32980ac07820SSatish Balay a->Mbs = oldmat->Mbs; 32990ac07820SSatish Balay a->Nbs = oldmat->Nbs; 33000ac07820SSatish Balay 330126283091SBarry Smith ierr = PetscLayoutCopy(matin->rmap,&mat->rmap);CHKERRQ(ierr); 330226283091SBarry Smith ierr = PetscLayoutCopy(matin->cmap,&mat->cmap);CHKERRQ(ierr); 3303899cda47SBarry Smith 33040ac07820SSatish Balay a->size = oldmat->size; 33050ac07820SSatish Balay a->rank = oldmat->rank; 3306aef5e8e0SSatish Balay a->donotstash = oldmat->donotstash; 3307aef5e8e0SSatish Balay a->roworiented = oldmat->roworiented; 3308aef5e8e0SSatish Balay a->rowindices = 0; 33090ac07820SSatish Balay a->rowvalues = 0; 33100ac07820SSatish Balay a->getrowactive = PETSC_FALSE; 331130793edcSSatish Balay a->barray = 0; 3312899cda47SBarry Smith a->rstartbs = oldmat->rstartbs; 3313899cda47SBarry Smith a->rendbs = oldmat->rendbs; 3314899cda47SBarry Smith a->cstartbs = oldmat->cstartbs; 3315899cda47SBarry Smith a->cendbs = oldmat->cendbs; 33160ac07820SSatish Balay 3317133cdb44SSatish Balay /* hash table stuff */ 3318133cdb44SSatish Balay a->ht = 0; 3319133cdb44SSatish Balay a->hd = 0; 3320133cdb44SSatish Balay a->ht_size = 0; 3321133cdb44SSatish Balay a->ht_flag = oldmat->ht_flag; 332225fdafccSSatish Balay a->ht_fact = oldmat->ht_fact; 3323133cdb44SSatish Balay a->ht_total_ct = 0; 3324133cdb44SSatish Balay a->ht_insert_ct = 0; 3325133cdb44SSatish Balay 3326899cda47SBarry Smith ierr = PetscMemcpy(a->rangebs,oldmat->rangebs,(a->size+1)*sizeof(PetscInt));CHKERRQ(ierr); 33270ac07820SSatish Balay if (oldmat->colmap) { 3328aa482453SBarry Smith #if defined (PETSC_USE_CTABLE) 33290f5bd95cSBarry Smith ierr = PetscTableCreateCopy(oldmat->colmap,&a->colmap);CHKERRQ(ierr); 333048e59246SSatish Balay #else 3331b24ad042SBarry Smith ierr = PetscMalloc((a->Nbs)*sizeof(PetscInt),&a->colmap);CHKERRQ(ierr); 333252e6d16bSBarry Smith ierr = PetscLogObjectMemory(mat,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr); 3333b24ad042SBarry Smith ierr = PetscMemcpy(a->colmap,oldmat->colmap,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr); 333448e59246SSatish Balay #endif 33350ac07820SSatish Balay } else a->colmap = 0; 33364beb1cfeSHong Zhang 33370ac07820SSatish Balay if (oldmat->garray && (len = ((Mat_SeqBAIJ*)(oldmat->B->data))->nbs)) { 3338b24ad042SBarry Smith ierr = PetscMalloc(len*sizeof(PetscInt),&a->garray);CHKERRQ(ierr); 333952e6d16bSBarry Smith ierr = PetscLogObjectMemory(mat,len*sizeof(PetscInt));CHKERRQ(ierr); 3340b24ad042SBarry Smith ierr = PetscMemcpy(a->garray,oldmat->garray,len*sizeof(PetscInt));CHKERRQ(ierr); 33410ac07820SSatish Balay } else a->garray = 0; 33420ac07820SSatish Balay 3343533163c2SBarry Smith ierr = MatStashCreate_Private(((PetscObject)matin)->comm,matin->rmap->bs,&mat->bstash);CHKERRQ(ierr); 33440ac07820SSatish Balay ierr = VecDuplicate(oldmat->lvec,&a->lvec);CHKERRQ(ierr); 334552e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->lvec);CHKERRQ(ierr); 33460ac07820SSatish Balay ierr = VecScatterCopy(oldmat->Mvctx,&a->Mvctx);CHKERRQ(ierr); 334752e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->Mvctx);CHKERRQ(ierr); 33487fff6886SHong Zhang 33492e8a6d31SBarry Smith ierr = MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr); 335052e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->A);CHKERRQ(ierr); 33512e8a6d31SBarry Smith ierr = MatDuplicate(oldmat->B,cpvalues,&a->B);CHKERRQ(ierr); 335252e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->B);CHKERRQ(ierr); 33537adad957SLisandro Dalcin ierr = PetscFListDuplicate(((PetscObject)matin)->qlist,&((PetscObject)mat)->qlist);CHKERRQ(ierr); 33540ac07820SSatish Balay *newmat = mat; 33554beb1cfeSHong Zhang 33563a40ed3dSBarry Smith PetscFunctionReturn(0); 33570ac07820SSatish Balay } 335857b952d6SSatish Balay 33594a2ae208SSatish Balay #undef __FUNCT__ 33605bba2384SShri Abhyankar #define __FUNCT__ "MatLoad_MPIBAIJ" 3361112444f4SShri Abhyankar PetscErrorCode MatLoad_MPIBAIJ(Mat newmat,PetscViewer viewer) 33624683f7a4SShri Abhyankar { 33634683f7a4SShri Abhyankar PetscErrorCode ierr; 33644683f7a4SShri Abhyankar int fd; 33654683f7a4SShri Abhyankar PetscInt i,nz,j,rstart,rend; 33664683f7a4SShri Abhyankar PetscScalar *vals,*buf; 33674683f7a4SShri Abhyankar MPI_Comm comm = ((PetscObject)viewer)->comm; 33684683f7a4SShri Abhyankar MPI_Status status; 33694683f7a4SShri Abhyankar PetscMPIInt rank,size,maxnz; 33704683f7a4SShri Abhyankar PetscInt header[4],*rowlengths = 0,M,N,m,*rowners,*cols; 33714683f7a4SShri Abhyankar PetscInt *locrowlens = PETSC_NULL,*procsnz = PETSC_NULL,*browners = PETSC_NULL; 33724683f7a4SShri Abhyankar PetscInt jj,*mycols,*ibuf,bs=1,Mbs,mbs,extra_rows,mmax; 33734683f7a4SShri Abhyankar PetscMPIInt tag = ((PetscObject)viewer)->tag; 33744683f7a4SShri Abhyankar PetscInt *dlens = PETSC_NULL,*odlens = PETSC_NULL,*mask = PETSC_NULL,*masked1 = PETSC_NULL,*masked2 = PETSC_NULL,rowcount,odcount; 33754683f7a4SShri Abhyankar PetscInt dcount,kmax,k,nzcount,tmp,mend,sizesset=1,grows,gcols; 33764683f7a4SShri Abhyankar 33774683f7a4SShri Abhyankar PetscFunctionBegin; 33784683f7a4SShri Abhyankar ierr = PetscOptionsBegin(comm,PETSC_NULL,"Options for loading MPIBAIJ matrix 2","Mat");CHKERRQ(ierr); 33794683f7a4SShri Abhyankar ierr = PetscOptionsInt("-matload_block_size","Set the blocksize used to store the matrix","MatLoad",bs,&bs,PETSC_NULL);CHKERRQ(ierr); 33804683f7a4SShri Abhyankar ierr = PetscOptionsEnd();CHKERRQ(ierr); 33814683f7a4SShri Abhyankar 33824683f7a4SShri Abhyankar ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 33834683f7a4SShri Abhyankar ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 33844683f7a4SShri Abhyankar if (!rank) { 33854683f7a4SShri Abhyankar ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr); 33864683f7a4SShri Abhyankar ierr = PetscBinaryRead(fd,(char *)header,4,PETSC_INT);CHKERRQ(ierr); 33874683f7a4SShri Abhyankar if (header[0] != MAT_FILE_CLASSID) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"not matrix object"); 33884683f7a4SShri Abhyankar } 33894683f7a4SShri Abhyankar 33904683f7a4SShri Abhyankar if (newmat->rmap->n < 0 && newmat->rmap->N < 0 && newmat->cmap->n < 0 && newmat->cmap->N < 0) sizesset = 0; 33914683f7a4SShri Abhyankar 33924683f7a4SShri Abhyankar ierr = MPI_Bcast(header+1,3,MPIU_INT,0,comm);CHKERRQ(ierr); 33934683f7a4SShri Abhyankar M = header[1]; N = header[2]; 33944683f7a4SShri Abhyankar 33954683f7a4SShri Abhyankar /* If global rows/cols are set to PETSC_DECIDE, set it to the sizes given in the file */ 33964683f7a4SShri Abhyankar if (sizesset && newmat->rmap->N < 0) newmat->rmap->N = M; 33974683f7a4SShri Abhyankar if (sizesset && newmat->cmap->N < 0) newmat->cmap->N = N; 33984683f7a4SShri Abhyankar 33994683f7a4SShri Abhyankar /* If global sizes are set, check if they are consistent with that given in the file */ 34004683f7a4SShri Abhyankar if (sizesset) { 34014683f7a4SShri Abhyankar ierr = MatGetSize(newmat,&grows,&gcols);CHKERRQ(ierr); 34024683f7a4SShri Abhyankar } 3403abd38a8fSBarry Smith if (sizesset && newmat->rmap->N != grows) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED, "Inconsistent # of rows:Matrix in file has (%d) and input matrix has (%d)",M,grows); 3404abd38a8fSBarry Smith if (sizesset && newmat->cmap->N != gcols) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED, "Inconsistent # of cols:Matrix in file has (%d) and input matrix has (%d)",N,gcols); 34054683f7a4SShri Abhyankar 34064683f7a4SShri Abhyankar if (M != N) SETERRQ(((PetscObject)viewer)->comm,PETSC_ERR_SUP,"Can only do square matrices"); 34074683f7a4SShri Abhyankar 34084683f7a4SShri Abhyankar /* 34094683f7a4SShri Abhyankar This code adds extra rows to make sure the number of rows is 34104683f7a4SShri Abhyankar divisible by the blocksize 34114683f7a4SShri Abhyankar */ 34124683f7a4SShri Abhyankar Mbs = M/bs; 34134683f7a4SShri Abhyankar extra_rows = bs - M + bs*Mbs; 34144683f7a4SShri Abhyankar if (extra_rows == bs) extra_rows = 0; 34154683f7a4SShri Abhyankar else Mbs++; 34164683f7a4SShri Abhyankar if (extra_rows && !rank) { 34174683f7a4SShri Abhyankar ierr = PetscInfo(viewer,"Padding loaded matrix to match blocksize\n");CHKERRQ(ierr); 34184683f7a4SShri Abhyankar } 34194683f7a4SShri Abhyankar 34204683f7a4SShri Abhyankar /* determine ownership of all rows */ 34214683f7a4SShri Abhyankar if (newmat->rmap->n < 0) { /* PETSC_DECIDE */ 34224683f7a4SShri Abhyankar mbs = Mbs/size + ((Mbs % size) > rank); 34234683f7a4SShri Abhyankar m = mbs*bs; 34244683f7a4SShri Abhyankar } else { /* User set */ 34254683f7a4SShri Abhyankar m = newmat->rmap->n; 34264683f7a4SShri Abhyankar mbs = m/bs; 34274683f7a4SShri Abhyankar } 34284683f7a4SShri Abhyankar ierr = PetscMalloc2(size+1,PetscInt,&rowners,size+1,PetscInt,&browners);CHKERRQ(ierr); 34294683f7a4SShri Abhyankar ierr = MPI_Allgather(&mbs,1,MPIU_INT,rowners+1,1,MPIU_INT,comm);CHKERRQ(ierr); 34304683f7a4SShri Abhyankar 34314683f7a4SShri Abhyankar /* process 0 needs enough room for process with most rows */ 34324683f7a4SShri Abhyankar if (!rank) { 34334683f7a4SShri Abhyankar mmax = rowners[1]; 34344683f7a4SShri Abhyankar for (i=2; i<size; i++) { 34354683f7a4SShri Abhyankar mmax = PetscMax(mmax,rowners[i]); 34364683f7a4SShri Abhyankar } 34374683f7a4SShri Abhyankar mmax*=bs; 34384683f7a4SShri Abhyankar } else mmax = m; 34394683f7a4SShri Abhyankar 34404683f7a4SShri Abhyankar rowners[0] = 0; 34414683f7a4SShri Abhyankar for (i=2; i<=size; i++) rowners[i] += rowners[i-1]; 34424683f7a4SShri Abhyankar for (i=0; i<=size; i++) browners[i] = rowners[i]*bs; 34434683f7a4SShri Abhyankar rstart = rowners[rank]; 34444683f7a4SShri Abhyankar rend = rowners[rank+1]; 34454683f7a4SShri Abhyankar 34464683f7a4SShri Abhyankar /* distribute row lengths to all processors */ 34474683f7a4SShri Abhyankar ierr = PetscMalloc((mmax+1)*sizeof(PetscInt),&locrowlens);CHKERRQ(ierr); 34484683f7a4SShri Abhyankar if (!rank) { 34494683f7a4SShri Abhyankar mend = m; 34504683f7a4SShri Abhyankar if (size == 1) mend = mend - extra_rows; 34514683f7a4SShri Abhyankar ierr = PetscBinaryRead(fd,locrowlens,mend,PETSC_INT);CHKERRQ(ierr); 34524683f7a4SShri Abhyankar for (j=mend; j<m; j++) locrowlens[j] = 1; 34534683f7a4SShri Abhyankar ierr = PetscMalloc(m*sizeof(PetscInt),&rowlengths);CHKERRQ(ierr); 34544683f7a4SShri Abhyankar ierr = PetscMalloc(size*sizeof(PetscInt),&procsnz);CHKERRQ(ierr); 34554683f7a4SShri Abhyankar ierr = PetscMemzero(procsnz,size*sizeof(PetscInt));CHKERRQ(ierr); 34564683f7a4SShri Abhyankar for (j=0; j<m; j++) { 34574683f7a4SShri Abhyankar procsnz[0] += locrowlens[j]; 34584683f7a4SShri Abhyankar } 34594683f7a4SShri Abhyankar for (i=1; i<size; i++) { 34604683f7a4SShri Abhyankar mend = browners[i+1] - browners[i]; 34614683f7a4SShri Abhyankar if (i == size-1) mend = mend - extra_rows; 34624683f7a4SShri Abhyankar ierr = PetscBinaryRead(fd,rowlengths,mend,PETSC_INT);CHKERRQ(ierr); 34634683f7a4SShri Abhyankar for (j=mend; j<browners[i+1] - browners[i]; j++) rowlengths[j] = 1; 34644683f7a4SShri Abhyankar /* calculate the number of nonzeros on each processor */ 34654683f7a4SShri Abhyankar for (j=0; j<browners[i+1]-browners[i]; j++) { 34664683f7a4SShri Abhyankar procsnz[i] += rowlengths[j]; 34674683f7a4SShri Abhyankar } 34684683f7a4SShri Abhyankar ierr = MPI_Send(rowlengths,browners[i+1]-browners[i],MPIU_INT,i,tag,comm);CHKERRQ(ierr); 34694683f7a4SShri Abhyankar } 34704683f7a4SShri Abhyankar ierr = PetscFree(rowlengths);CHKERRQ(ierr); 34714683f7a4SShri Abhyankar } else { 34724683f7a4SShri Abhyankar ierr = MPI_Recv(locrowlens,m,MPIU_INT,0,tag,comm,&status);CHKERRQ(ierr); 34734683f7a4SShri Abhyankar } 34744683f7a4SShri Abhyankar 34754683f7a4SShri Abhyankar if (!rank) { 34764683f7a4SShri Abhyankar /* determine max buffer needed and allocate it */ 34774683f7a4SShri Abhyankar maxnz = procsnz[0]; 34784683f7a4SShri Abhyankar for (i=1; i<size; i++) { 34794683f7a4SShri Abhyankar maxnz = PetscMax(maxnz,procsnz[i]); 34804683f7a4SShri Abhyankar } 34814683f7a4SShri Abhyankar ierr = PetscMalloc(maxnz*sizeof(PetscInt),&cols);CHKERRQ(ierr); 34824683f7a4SShri Abhyankar 34834683f7a4SShri Abhyankar /* read in my part of the matrix column indices */ 34844683f7a4SShri Abhyankar nz = procsnz[0]; 34854683f7a4SShri Abhyankar ierr = PetscMalloc((nz+1)*sizeof(PetscInt),&ibuf);CHKERRQ(ierr); 34864683f7a4SShri Abhyankar mycols = ibuf; 34874683f7a4SShri Abhyankar if (size == 1) nz -= extra_rows; 34884683f7a4SShri Abhyankar ierr = PetscBinaryRead(fd,mycols,nz,PETSC_INT);CHKERRQ(ierr); 34894683f7a4SShri Abhyankar if (size == 1) for (i=0; i< extra_rows; i++) { mycols[nz+i] = M+i; } 34904683f7a4SShri Abhyankar 34914683f7a4SShri Abhyankar /* read in every ones (except the last) and ship off */ 34924683f7a4SShri Abhyankar for (i=1; i<size-1; i++) { 34934683f7a4SShri Abhyankar nz = procsnz[i]; 34944683f7a4SShri Abhyankar ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr); 34954683f7a4SShri Abhyankar ierr = MPI_Send(cols,nz,MPIU_INT,i,tag,comm);CHKERRQ(ierr); 34964683f7a4SShri Abhyankar } 34974683f7a4SShri Abhyankar /* read in the stuff for the last proc */ 34984683f7a4SShri Abhyankar if (size != 1) { 34994683f7a4SShri Abhyankar nz = procsnz[size-1] - extra_rows; /* the extra rows are not on the disk */ 35004683f7a4SShri Abhyankar ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr); 35014683f7a4SShri Abhyankar for (i=0; i<extra_rows; i++) cols[nz+i] = M+i; 35024683f7a4SShri Abhyankar ierr = MPI_Send(cols,nz+extra_rows,MPIU_INT,size-1,tag,comm);CHKERRQ(ierr); 35034683f7a4SShri Abhyankar } 35044683f7a4SShri Abhyankar ierr = PetscFree(cols);CHKERRQ(ierr); 35054683f7a4SShri Abhyankar } else { 35064683f7a4SShri Abhyankar /* determine buffer space needed for message */ 35074683f7a4SShri Abhyankar nz = 0; 35084683f7a4SShri Abhyankar for (i=0; i<m; i++) { 35094683f7a4SShri Abhyankar nz += locrowlens[i]; 35104683f7a4SShri Abhyankar } 35114683f7a4SShri Abhyankar ierr = PetscMalloc((nz+1)*sizeof(PetscInt),&ibuf);CHKERRQ(ierr); 35124683f7a4SShri Abhyankar mycols = ibuf; 35134683f7a4SShri Abhyankar /* receive message of column indices*/ 35144683f7a4SShri Abhyankar ierr = MPI_Recv(mycols,nz,MPIU_INT,0,tag,comm,&status);CHKERRQ(ierr); 35154683f7a4SShri Abhyankar ierr = MPI_Get_count(&status,MPIU_INT,&maxnz);CHKERRQ(ierr); 35164683f7a4SShri Abhyankar if (maxnz != nz) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 35174683f7a4SShri Abhyankar } 35184683f7a4SShri Abhyankar 35194683f7a4SShri Abhyankar /* loop over local rows, determining number of off diagonal entries */ 35204683f7a4SShri Abhyankar ierr = PetscMalloc2(rend-rstart,PetscInt,&dlens,rend-rstart,PetscInt,&odlens);CHKERRQ(ierr); 35214683f7a4SShri Abhyankar ierr = PetscMalloc3(Mbs,PetscInt,&mask,Mbs,PetscInt,&masked1,Mbs,PetscInt,&masked2);CHKERRQ(ierr); 35224683f7a4SShri Abhyankar ierr = PetscMemzero(mask,Mbs*sizeof(PetscInt));CHKERRQ(ierr); 35234683f7a4SShri Abhyankar ierr = PetscMemzero(masked1,Mbs*sizeof(PetscInt));CHKERRQ(ierr); 35244683f7a4SShri Abhyankar ierr = PetscMemzero(masked2,Mbs*sizeof(PetscInt));CHKERRQ(ierr); 35254683f7a4SShri Abhyankar rowcount = 0; nzcount = 0; 35264683f7a4SShri Abhyankar for (i=0; i<mbs; i++) { 35274683f7a4SShri Abhyankar dcount = 0; 35284683f7a4SShri Abhyankar odcount = 0; 35294683f7a4SShri Abhyankar for (j=0; j<bs; j++) { 35304683f7a4SShri Abhyankar kmax = locrowlens[rowcount]; 35314683f7a4SShri Abhyankar for (k=0; k<kmax; k++) { 35324683f7a4SShri Abhyankar tmp = mycols[nzcount++]/bs; 35334683f7a4SShri Abhyankar if (!mask[tmp]) { 35344683f7a4SShri Abhyankar mask[tmp] = 1; 35354683f7a4SShri Abhyankar if (tmp < rstart || tmp >= rend) masked2[odcount++] = tmp; 35364683f7a4SShri Abhyankar else masked1[dcount++] = tmp; 35374683f7a4SShri Abhyankar } 35384683f7a4SShri Abhyankar } 35394683f7a4SShri Abhyankar rowcount++; 35404683f7a4SShri Abhyankar } 35414683f7a4SShri Abhyankar 35424683f7a4SShri Abhyankar dlens[i] = dcount; 35434683f7a4SShri Abhyankar odlens[i] = odcount; 35444683f7a4SShri Abhyankar 35454683f7a4SShri Abhyankar /* zero out the mask elements we set */ 35464683f7a4SShri Abhyankar for (j=0; j<dcount; j++) mask[masked1[j]] = 0; 35474683f7a4SShri Abhyankar for (j=0; j<odcount; j++) mask[masked2[j]] = 0; 35484683f7a4SShri Abhyankar } 35494683f7a4SShri Abhyankar 35504683f7a4SShri Abhyankar 35514683f7a4SShri Abhyankar if (!sizesset) { 35524683f7a4SShri Abhyankar ierr = MatSetSizes(newmat,m,m,M+extra_rows,N+extra_rows);CHKERRQ(ierr); 35534683f7a4SShri Abhyankar } 35544683f7a4SShri Abhyankar ierr = MatMPIBAIJSetPreallocation(newmat,bs,0,dlens,0,odlens);CHKERRQ(ierr); 35554683f7a4SShri Abhyankar 35564683f7a4SShri Abhyankar if (!rank) { 35574683f7a4SShri Abhyankar ierr = PetscMalloc((maxnz+1)*sizeof(PetscScalar),&buf);CHKERRQ(ierr); 35584683f7a4SShri Abhyankar /* read in my part of the matrix numerical values */ 35594683f7a4SShri Abhyankar nz = procsnz[0]; 35604683f7a4SShri Abhyankar vals = buf; 35614683f7a4SShri Abhyankar mycols = ibuf; 35624683f7a4SShri Abhyankar if (size == 1) nz -= extra_rows; 35634683f7a4SShri Abhyankar ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 35644683f7a4SShri Abhyankar if (size == 1) for (i=0; i< extra_rows; i++) { vals[nz+i] = 1.0; } 35654683f7a4SShri Abhyankar 35664683f7a4SShri Abhyankar /* insert into matrix */ 35674683f7a4SShri Abhyankar jj = rstart*bs; 35684683f7a4SShri Abhyankar for (i=0; i<m; i++) { 35694683f7a4SShri Abhyankar ierr = MatSetValues_MPIBAIJ(newmat,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr); 35704683f7a4SShri Abhyankar mycols += locrowlens[i]; 35714683f7a4SShri Abhyankar vals += locrowlens[i]; 35724683f7a4SShri Abhyankar jj++; 35734683f7a4SShri Abhyankar } 35744683f7a4SShri Abhyankar /* read in other processors (except the last one) and ship out */ 35754683f7a4SShri Abhyankar for (i=1; i<size-1; i++) { 35764683f7a4SShri Abhyankar nz = procsnz[i]; 35774683f7a4SShri Abhyankar vals = buf; 35784683f7a4SShri Abhyankar ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 35794683f7a4SShri Abhyankar ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,((PetscObject)newmat)->tag,comm);CHKERRQ(ierr); 35804683f7a4SShri Abhyankar } 35814683f7a4SShri Abhyankar /* the last proc */ 35824683f7a4SShri Abhyankar if (size != 1){ 35834683f7a4SShri Abhyankar nz = procsnz[i] - extra_rows; 35844683f7a4SShri Abhyankar vals = buf; 35854683f7a4SShri Abhyankar ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 35864683f7a4SShri Abhyankar for (i=0; i<extra_rows; i++) vals[nz+i] = 1.0; 35874683f7a4SShri Abhyankar ierr = MPI_Send(vals,nz+extra_rows,MPIU_SCALAR,size-1,((PetscObject)newmat)->tag,comm);CHKERRQ(ierr); 35884683f7a4SShri Abhyankar } 35894683f7a4SShri Abhyankar ierr = PetscFree(procsnz);CHKERRQ(ierr); 35904683f7a4SShri Abhyankar } else { 35914683f7a4SShri Abhyankar /* receive numeric values */ 35924683f7a4SShri Abhyankar ierr = PetscMalloc((nz+1)*sizeof(PetscScalar),&buf);CHKERRQ(ierr); 35934683f7a4SShri Abhyankar 35944683f7a4SShri Abhyankar /* receive message of values*/ 35954683f7a4SShri Abhyankar vals = buf; 35964683f7a4SShri Abhyankar mycols = ibuf; 35974683f7a4SShri Abhyankar ierr = MPI_Recv(vals,nz,MPIU_SCALAR,0,((PetscObject)newmat)->tag,comm,&status);CHKERRQ(ierr); 35984683f7a4SShri Abhyankar ierr = MPI_Get_count(&status,MPIU_SCALAR,&maxnz);CHKERRQ(ierr); 35994683f7a4SShri Abhyankar if (maxnz != nz) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 36004683f7a4SShri Abhyankar 36014683f7a4SShri Abhyankar /* insert into matrix */ 36024683f7a4SShri Abhyankar jj = rstart*bs; 36034683f7a4SShri Abhyankar for (i=0; i<m; i++) { 36044683f7a4SShri Abhyankar ierr = MatSetValues_MPIBAIJ(newmat,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr); 36054683f7a4SShri Abhyankar mycols += locrowlens[i]; 36064683f7a4SShri Abhyankar vals += locrowlens[i]; 36074683f7a4SShri Abhyankar jj++; 36084683f7a4SShri Abhyankar } 36094683f7a4SShri Abhyankar } 36104683f7a4SShri Abhyankar ierr = PetscFree(locrowlens);CHKERRQ(ierr); 36114683f7a4SShri Abhyankar ierr = PetscFree(buf);CHKERRQ(ierr); 36124683f7a4SShri Abhyankar ierr = PetscFree(ibuf);CHKERRQ(ierr); 36134683f7a4SShri Abhyankar ierr = PetscFree2(rowners,browners);CHKERRQ(ierr); 36144683f7a4SShri Abhyankar ierr = PetscFree2(dlens,odlens);CHKERRQ(ierr); 36154683f7a4SShri Abhyankar ierr = PetscFree3(mask,masked1,masked2);CHKERRQ(ierr); 36164683f7a4SShri Abhyankar ierr = MatAssemblyBegin(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 36174683f7a4SShri Abhyankar ierr = MatAssemblyEnd(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 36184683f7a4SShri Abhyankar 36194683f7a4SShri Abhyankar PetscFunctionReturn(0); 36204683f7a4SShri Abhyankar } 36214683f7a4SShri Abhyankar 36224683f7a4SShri Abhyankar #undef __FUNCT__ 36234a2ae208SSatish Balay #define __FUNCT__ "MatMPIBAIJSetHashTableFactor" 3624133cdb44SSatish Balay /*@ 3625133cdb44SSatish Balay MatMPIBAIJSetHashTableFactor - Sets the factor required to compute the size of the HashTable. 3626133cdb44SSatish Balay 3627133cdb44SSatish Balay Input Parameters: 3628133cdb44SSatish Balay . mat - the matrix 3629133cdb44SSatish Balay . fact - factor 3630133cdb44SSatish Balay 3631c5eb9154SBarry Smith Not Collective, each process can use a different factor 3632fee21e36SBarry Smith 36338c890885SBarry Smith Level: advanced 36348c890885SBarry Smith 3635133cdb44SSatish Balay Notes: 36368c07d4e3SBarry Smith This can also be set by the command line option: -mat_use_hash_table <fact> 3637133cdb44SSatish Balay 3638133cdb44SSatish Balay .keywords: matrix, hashtable, factor, HT 3639133cdb44SSatish Balay 3640133cdb44SSatish Balay .seealso: MatSetOption() 3641133cdb44SSatish Balay @*/ 3642be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPIBAIJSetHashTableFactor(Mat mat,PetscReal fact) 3643133cdb44SSatish Balay { 3644dfbe8321SBarry Smith PetscErrorCode ierr,(*f)(Mat,PetscReal); 36455bf65638SKris Buschelman 36465bf65638SKris Buschelman PetscFunctionBegin; 36475bf65638SKris Buschelman ierr = PetscObjectQueryFunction((PetscObject)mat,"MatSetHashTableFactor_C",(void (**)(void))&f);CHKERRQ(ierr); 36485bf65638SKris Buschelman if (f) { 36495bf65638SKris Buschelman ierr = (*f)(mat,fact);CHKERRQ(ierr); 36505bf65638SKris Buschelman } 36515bf65638SKris Buschelman PetscFunctionReturn(0); 36525bf65638SKris Buschelman } 36535bf65638SKris Buschelman 3654be1d678aSKris Buschelman EXTERN_C_BEGIN 36555bf65638SKris Buschelman #undef __FUNCT__ 36565bf65638SKris Buschelman #define __FUNCT__ "MatSetHashTableFactor_MPIBAIJ" 3657be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatSetHashTableFactor_MPIBAIJ(Mat mat,PetscReal fact) 36585bf65638SKris Buschelman { 365925fdafccSSatish Balay Mat_MPIBAIJ *baij; 3660133cdb44SSatish Balay 3661133cdb44SSatish Balay PetscFunctionBegin; 3662133cdb44SSatish Balay baij = (Mat_MPIBAIJ*)mat->data; 3663133cdb44SSatish Balay baij->ht_fact = fact; 3664133cdb44SSatish Balay PetscFunctionReturn(0); 3665133cdb44SSatish Balay } 3666be1d678aSKris Buschelman EXTERN_C_END 3667f2a5309cSSatish Balay 36684a2ae208SSatish Balay #undef __FUNCT__ 36694a2ae208SSatish Balay #define __FUNCT__ "MatMPIBAIJGetSeqBAIJ" 3670be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPIBAIJGetSeqBAIJ(Mat A,Mat *Ad,Mat *Ao,PetscInt *colmap[]) 3671f2a5309cSSatish Balay { 3672f2a5309cSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 3673f2a5309cSSatish Balay PetscFunctionBegin; 3674f2a5309cSSatish Balay *Ad = a->A; 3675f2a5309cSSatish Balay *Ao = a->B; 3676195d93cdSBarry Smith *colmap = a->garray; 3677f2a5309cSSatish Balay PetscFunctionReturn(0); 3678f2a5309cSSatish Balay } 367985535b8eSBarry Smith 368085535b8eSBarry Smith /* 368185535b8eSBarry Smith Special version for direct calls from Fortran (to eliminate two function call overheads 368285535b8eSBarry Smith */ 368385535b8eSBarry Smith #if defined(PETSC_HAVE_FORTRAN_CAPS) 368485535b8eSBarry Smith #define matmpibaijsetvaluesblocked_ MATMPIBAIJSETVALUESBLOCKED 368585535b8eSBarry Smith #elif !defined(PETSC_HAVE_FORTRAN_UNDERSCORE) 368685535b8eSBarry Smith #define matmpibaijsetvaluesblocked_ matmpibaijsetvaluesblocked 368785535b8eSBarry Smith #endif 368885535b8eSBarry Smith 368985535b8eSBarry Smith #undef __FUNCT__ 369085535b8eSBarry Smith #define __FUNCT__ "matmpibiajsetvaluesblocked" 369185535b8eSBarry Smith /*@C 369285535b8eSBarry Smith MatMPIBAIJSetValuesBlocked - Direct Fortran call to replace call to MatSetValuesBlocked() 369385535b8eSBarry Smith 369485535b8eSBarry Smith Collective on Mat 369585535b8eSBarry Smith 369685535b8eSBarry Smith Input Parameters: 369785535b8eSBarry Smith + mat - the matrix 369885535b8eSBarry Smith . min - number of input rows 369985535b8eSBarry Smith . im - input rows 370085535b8eSBarry Smith . nin - number of input columns 370185535b8eSBarry Smith . in - input columns 370285535b8eSBarry Smith . v - numerical values input 370385535b8eSBarry Smith - addvin - INSERT_VALUES or ADD_VALUES 370485535b8eSBarry Smith 370585535b8eSBarry Smith Notes: This has a complete copy of MatSetValuesBlocked_MPIBAIJ() which is terrible code un-reuse. 370685535b8eSBarry Smith 370785535b8eSBarry Smith Level: advanced 370885535b8eSBarry Smith 370985535b8eSBarry Smith .seealso: MatSetValuesBlocked() 371085535b8eSBarry Smith @*/ 371185535b8eSBarry Smith PetscErrorCode matmpibaijsetvaluesblocked_(Mat *matin,PetscInt *min,const PetscInt im[],PetscInt *nin,const PetscInt in[],const MatScalar v[],InsertMode *addvin) 371285535b8eSBarry Smith { 371385535b8eSBarry Smith /* convert input arguments to C version */ 371485535b8eSBarry Smith Mat mat = *matin; 371585535b8eSBarry Smith PetscInt m = *min, n = *nin; 371685535b8eSBarry Smith InsertMode addv = *addvin; 371785535b8eSBarry Smith 371885535b8eSBarry Smith Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 371985535b8eSBarry Smith const MatScalar *value; 372085535b8eSBarry Smith MatScalar *barray=baij->barray; 372185535b8eSBarry Smith PetscTruth roworiented = baij->roworiented; 372285535b8eSBarry Smith PetscErrorCode ierr; 372385535b8eSBarry Smith PetscInt i,j,ii,jj,row,col,rstart=baij->rstartbs; 372485535b8eSBarry Smith PetscInt rend=baij->rendbs,cstart=baij->cstartbs,stepval; 3725d0f46423SBarry Smith PetscInt cend=baij->cendbs,bs=mat->rmap->bs,bs2=baij->bs2; 372685535b8eSBarry Smith 372785535b8eSBarry Smith PetscFunctionBegin; 372885535b8eSBarry Smith /* tasks normally handled by MatSetValuesBlocked() */ 372985535b8eSBarry Smith if (mat->insertmode == NOT_SET_VALUES) { 373085535b8eSBarry Smith mat->insertmode = addv; 373185535b8eSBarry Smith } 373285535b8eSBarry Smith #if defined(PETSC_USE_DEBUG) 3733e7e72b3dSBarry Smith else if (mat->insertmode != addv) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Cannot mix add values and insert values"); 3734e32f2f54SBarry Smith if (mat->factortype) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Not for factored matrix"); 373585535b8eSBarry Smith #endif 373685535b8eSBarry Smith if (mat->assembled) { 373785535b8eSBarry Smith mat->was_assembled = PETSC_TRUE; 373885535b8eSBarry Smith mat->assembled = PETSC_FALSE; 373985535b8eSBarry Smith } 374085535b8eSBarry Smith ierr = PetscLogEventBegin(MAT_SetValues,mat,0,0,0);CHKERRQ(ierr); 374185535b8eSBarry Smith 374285535b8eSBarry Smith 374385535b8eSBarry Smith if(!barray) { 374485535b8eSBarry Smith ierr = PetscMalloc(bs2*sizeof(MatScalar),&barray);CHKERRQ(ierr); 374585535b8eSBarry Smith baij->barray = barray; 374685535b8eSBarry Smith } 374785535b8eSBarry Smith 374885535b8eSBarry Smith if (roworiented) { 374985535b8eSBarry Smith stepval = (n-1)*bs; 375085535b8eSBarry Smith } else { 375185535b8eSBarry Smith stepval = (m-1)*bs; 375285535b8eSBarry Smith } 375385535b8eSBarry Smith for (i=0; i<m; i++) { 375485535b8eSBarry Smith if (im[i] < 0) continue; 375585535b8eSBarry Smith #if defined(PETSC_USE_DEBUG) 3756e32f2f54SBarry Smith if (im[i] >= baij->Mbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large, row %D max %D",im[i],baij->Mbs-1); 375785535b8eSBarry Smith #endif 375885535b8eSBarry Smith if (im[i] >= rstart && im[i] < rend) { 375985535b8eSBarry Smith row = im[i] - rstart; 376085535b8eSBarry Smith for (j=0; j<n; j++) { 376185535b8eSBarry Smith /* If NumCol = 1 then a copy is not required */ 376285535b8eSBarry Smith if ((roworiented) && (n == 1)) { 376385535b8eSBarry Smith barray = (MatScalar*)v + i*bs2; 376485535b8eSBarry Smith } else if((!roworiented) && (m == 1)) { 376585535b8eSBarry Smith barray = (MatScalar*)v + j*bs2; 376685535b8eSBarry Smith } else { /* Here a copy is required */ 376785535b8eSBarry Smith if (roworiented) { 376885535b8eSBarry Smith value = v + i*(stepval+bs)*bs + j*bs; 376985535b8eSBarry Smith } else { 377085535b8eSBarry Smith value = v + j*(stepval+bs)*bs + i*bs; 377185535b8eSBarry Smith } 377285535b8eSBarry Smith for (ii=0; ii<bs; ii++,value+=stepval) { 377385535b8eSBarry Smith for (jj=0; jj<bs; jj++) { 377485535b8eSBarry Smith *barray++ = *value++; 377585535b8eSBarry Smith } 377685535b8eSBarry Smith } 377785535b8eSBarry Smith barray -=bs2; 377885535b8eSBarry Smith } 377985535b8eSBarry Smith 378085535b8eSBarry Smith if (in[j] >= cstart && in[j] < cend){ 378185535b8eSBarry Smith col = in[j] - cstart; 378297e5c40aSBarry Smith ierr = MatSetValuesBlocked_SeqBAIJ(baij->A,1,&row,1,&col,barray,addv);CHKERRQ(ierr); 378385535b8eSBarry Smith } 378485535b8eSBarry Smith else if (in[j] < 0) continue; 378585535b8eSBarry Smith #if defined(PETSC_USE_DEBUG) 3786cb9801acSJed Brown else if (in[j] >= baij->Nbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large, col %D max %D",in[j],baij->Nbs-1); 378785535b8eSBarry Smith #endif 378885535b8eSBarry Smith else { 378985535b8eSBarry Smith if (mat->was_assembled) { 379085535b8eSBarry Smith if (!baij->colmap) { 379185535b8eSBarry Smith ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 379285535b8eSBarry Smith } 379385535b8eSBarry Smith 379485535b8eSBarry Smith #if defined(PETSC_USE_DEBUG) 379585535b8eSBarry Smith #if defined (PETSC_USE_CTABLE) 379685535b8eSBarry Smith { PetscInt data; 379785535b8eSBarry Smith ierr = PetscTableFind(baij->colmap,in[j]+1,&data);CHKERRQ(ierr); 3798e32f2f54SBarry Smith if ((data - 1) % bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap"); 379985535b8eSBarry Smith } 380085535b8eSBarry Smith #else 3801e32f2f54SBarry Smith if ((baij->colmap[in[j]] - 1) % bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap"); 380285535b8eSBarry Smith #endif 380385535b8eSBarry Smith #endif 380485535b8eSBarry Smith #if defined (PETSC_USE_CTABLE) 380585535b8eSBarry Smith ierr = PetscTableFind(baij->colmap,in[j]+1,&col);CHKERRQ(ierr); 380685535b8eSBarry Smith col = (col - 1)/bs; 380785535b8eSBarry Smith #else 380885535b8eSBarry Smith col = (baij->colmap[in[j]] - 1)/bs; 380985535b8eSBarry Smith #endif 381085535b8eSBarry Smith if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) { 381185535b8eSBarry Smith ierr = DisAssemble_MPIBAIJ(mat);CHKERRQ(ierr); 381285535b8eSBarry Smith col = in[j]; 381385535b8eSBarry Smith } 381485535b8eSBarry Smith } 381585535b8eSBarry Smith else col = in[j]; 381697e5c40aSBarry Smith ierr = MatSetValuesBlocked_SeqBAIJ(baij->B,1,&row,1,&col,barray,addv);CHKERRQ(ierr); 381785535b8eSBarry Smith } 381885535b8eSBarry Smith } 381985535b8eSBarry Smith } else { 382085535b8eSBarry Smith if (!baij->donotstash) { 382185535b8eSBarry Smith if (roworiented) { 382285535b8eSBarry Smith ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 382385535b8eSBarry Smith } else { 382485535b8eSBarry Smith ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 382585535b8eSBarry Smith } 382685535b8eSBarry Smith } 382785535b8eSBarry Smith } 382885535b8eSBarry Smith } 382985535b8eSBarry Smith 383085535b8eSBarry Smith /* task normally handled by MatSetValuesBlocked() */ 383185535b8eSBarry Smith ierr = PetscLogEventEnd(MAT_SetValues,mat,0,0,0);CHKERRQ(ierr); 383285535b8eSBarry Smith PetscFunctionReturn(0); 383385535b8eSBarry Smith } 3834