1a5eb4965SSatish Balay #ifdef PETSC_RCS_HEADER 2*4fdb0a08SBarry Smith static char vcid[] = "$Id: mpibaij.c,v 1.175 1999/09/02 14:53:30 bsmith Exp bsmith $"; 379bdfe76SSatish Balay #endif 479bdfe76SSatish Balay 577ed5343SBarry Smith #include "src/mat/impls/baij/mpi/mpibaij.h" /*I "mat.h" I*/ 6c16cb8f2SBarry Smith #include "src/vec/vecimpl.h" 779bdfe76SSatish Balay 857b952d6SSatish Balay extern int MatSetUpMultiply_MPIBAIJ(Mat); 957b952d6SSatish Balay extern int DisAssemble_MPIBAIJ(Mat); 10d212a18eSSatish Balay extern int MatIncreaseOverlap_MPIBAIJ(Mat,int,IS *,int); 117b2a1423SBarry Smith extern int MatGetSubMatrices_MPIBAIJ(Mat,int,IS *,IS *,MatReuse,Mat **); 12946de2abSSatish Balay extern int MatGetValues_SeqBAIJ(Mat,int,int *,int,int *,Scalar *); 13bbb85fb3SSatish Balay extern int MatSetValues_SeqBAIJ(Mat,int,int *,int,int *,Scalar *,InsertMode); 14bbb85fb3SSatish Balay extern int MatSetValuesBlocked_SeqBAIJ(Mat,int,int*,int,int*,Scalar*,InsertMode); 15bbb85fb3SSatish Balay extern int MatGetRow_SeqBAIJ(Mat,int,int*,int**,Scalar**); 16bbb85fb3SSatish Balay extern int MatRestoreRow_SeqBAIJ(Mat,int,int*,int**,Scalar**); 17bbb85fb3SSatish Balay extern int MatPrintHelp_SeqBAIJ(Mat); 183b2fbd54SBarry Smith 197fc3c18eSBarry Smith EXTERN_C_BEGIN 207fc3c18eSBarry Smith #undef __FUNC__ 217fc3c18eSBarry Smith #define __FUNC__ "MatStoreValues_MPIBAIJ" 227fc3c18eSBarry Smith int MatStoreValues_MPIBAIJ(Mat mat) 237fc3c18eSBarry Smith { 247fc3c18eSBarry Smith Mat_MPIBAIJ *aij = (Mat_MPIBAIJ *)mat->data; 257fc3c18eSBarry Smith int ierr; 267fc3c18eSBarry Smith 277fc3c18eSBarry Smith PetscFunctionBegin; 287fc3c18eSBarry Smith ierr = MatStoreValues(aij->A);CHKERRQ(ierr); 297fc3c18eSBarry Smith ierr = MatStoreValues(aij->B);CHKERRQ(ierr); 307fc3c18eSBarry Smith PetscFunctionReturn(0); 317fc3c18eSBarry Smith } 327fc3c18eSBarry Smith EXTERN_C_END 337fc3c18eSBarry Smith 347fc3c18eSBarry Smith EXTERN_C_BEGIN 357fc3c18eSBarry Smith #undef __FUNC__ 367fc3c18eSBarry Smith #define __FUNC__ "MatRetrieveValues_MPIBAIJ" 377fc3c18eSBarry Smith int MatRetrieveValues_MPIBAIJ(Mat mat) 387fc3c18eSBarry Smith { 397fc3c18eSBarry Smith Mat_MPIBAIJ *aij = (Mat_MPIBAIJ *)mat->data; 407fc3c18eSBarry Smith int ierr; 417fc3c18eSBarry Smith 427fc3c18eSBarry Smith PetscFunctionBegin; 437fc3c18eSBarry Smith ierr = MatRetrieveValues(aij->A);CHKERRQ(ierr); 447fc3c18eSBarry Smith ierr = MatRetrieveValues(aij->B);CHKERRQ(ierr); 457fc3c18eSBarry Smith PetscFunctionReturn(0); 467fc3c18eSBarry Smith } 477fc3c18eSBarry Smith EXTERN_C_END 487fc3c18eSBarry Smith 49537820f0SBarry Smith /* 50537820f0SBarry Smith Local utility routine that creates a mapping from the global column 5157b952d6SSatish Balay number to the local number in the off-diagonal part of the local 5257b952d6SSatish Balay storage of the matrix. This is done in a non scable way since the 5357b952d6SSatish Balay length of colmap equals the global matrix length. 5457b952d6SSatish Balay */ 555615d1e5SSatish Balay #undef __FUNC__ 565615d1e5SSatish Balay #define __FUNC__ "CreateColmap_MPIBAIJ_Private" 5757b952d6SSatish Balay static int CreateColmap_MPIBAIJ_Private(Mat mat) 5857b952d6SSatish Balay { 5957b952d6SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *) mat->data; 6057b952d6SSatish Balay Mat_SeqBAIJ *B = (Mat_SeqBAIJ*) baij->B->data; 61dc2900e9SSatish Balay int nbs = B->nbs,i,bs=B->bs,ierr; 6257b952d6SSatish Balay 63d64ed03dSBarry Smith PetscFunctionBegin; 64aa482453SBarry Smith #if defined (PETSC_USE_CTABLE) 65fa46199cSSatish Balay ierr = TableCreate(baij->nbs/5,&baij->colmap);CHKERRQ(ierr); 6648e59246SSatish Balay for ( i=0; i<nbs; i++ ){ 6748e59246SSatish Balay ierr = TableAdd(baij->colmap,baij->garray[i]+1,i*bs+1);CHKERRQ(ierr); 6848e59246SSatish Balay } 6948e59246SSatish Balay #else 70758f045eSSatish Balay baij->colmap = (int *) PetscMalloc((baij->Nbs+1)*sizeof(int));CHKPTRQ(baij->colmap); 7157b952d6SSatish Balay PLogObjectMemory(mat,baij->Nbs*sizeof(int)); 72549d3d68SSatish Balay ierr = PetscMemzero(baij->colmap,baij->Nbs*sizeof(int));CHKERRQ(ierr); 73928fc39bSSatish Balay for ( i=0; i<nbs; i++ ) baij->colmap[baij->garray[i]] = i*bs+1; 7448e59246SSatish Balay #endif 753a40ed3dSBarry Smith PetscFunctionReturn(0); 7657b952d6SSatish Balay } 7757b952d6SSatish Balay 7880c1aa95SSatish Balay #define CHUNKSIZE 10 7980c1aa95SSatish Balay 80f5e9677aSSatish Balay #define MatSetValues_SeqBAIJ_A_Private(row,col,value,addv) \ 8180c1aa95SSatish Balay { \ 8280c1aa95SSatish Balay \ 8380c1aa95SSatish Balay brow = row/bs; \ 8480c1aa95SSatish Balay rp = aj + ai[brow]; ap = aa + bs2*ai[brow]; \ 85ac7a638eSSatish Balay rmax = aimax[brow]; nrow = ailen[brow]; \ 8680c1aa95SSatish Balay bcol = col/bs; \ 8780c1aa95SSatish Balay ridx = row % bs; cidx = col % bs; \ 88ab26458aSBarry Smith low = 0; high = nrow; \ 89ab26458aSBarry Smith while (high-low > 3) { \ 90ab26458aSBarry Smith t = (low+high)/2; \ 91ab26458aSBarry Smith if (rp[t] > bcol) high = t; \ 92ab26458aSBarry Smith else low = t; \ 93ab26458aSBarry Smith } \ 94ab26458aSBarry Smith for ( _i=low; _i<high; _i++ ) { \ 9580c1aa95SSatish Balay if (rp[_i] > bcol) break; \ 9680c1aa95SSatish Balay if (rp[_i] == bcol) { \ 9780c1aa95SSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 98eada6651SSatish Balay if (addv == ADD_VALUES) *bap += value; \ 99eada6651SSatish Balay else *bap = value; \ 100ac7a638eSSatish Balay goto a_noinsert; \ 10180c1aa95SSatish Balay } \ 10280c1aa95SSatish Balay } \ 10389280ab3SLois Curfman McInnes if (a->nonew == 1) goto a_noinsert; \ 104a8c6a408SBarry Smith else if (a->nonew == -1) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Inserting a new nonzero into matrix"); \ 10580c1aa95SSatish Balay if (nrow >= rmax) { \ 10680c1aa95SSatish Balay /* there is no extra room in row, therefore enlarge */ \ 10780c1aa95SSatish Balay int new_nz = ai[a->mbs] + CHUNKSIZE,len,*new_i,*new_j; \ 10880c1aa95SSatish Balay Scalar *new_a; \ 10980c1aa95SSatish Balay \ 110a8c6a408SBarry Smith if (a->nonew == -2) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Inserting a new nonzero in the matrix"); \ 11189280ab3SLois Curfman McInnes \ 11280c1aa95SSatish Balay /* malloc new storage space */ \ 11380c1aa95SSatish Balay len = new_nz*(sizeof(int)+bs2*sizeof(Scalar))+(a->mbs+1)*sizeof(int); \ 11480c1aa95SSatish Balay new_a = (Scalar *) PetscMalloc( len );CHKPTRQ(new_a); \ 11580c1aa95SSatish Balay new_j = (int *) (new_a + bs2*new_nz); \ 11680c1aa95SSatish Balay new_i = new_j + new_nz; \ 11780c1aa95SSatish Balay \ 11880c1aa95SSatish Balay /* copy over old data into new slots */ \ 11980c1aa95SSatish Balay for ( ii=0; ii<brow+1; ii++ ) {new_i[ii] = ai[ii];} \ 12080c1aa95SSatish Balay for ( ii=brow+1; ii<a->mbs+1; ii++ ) {new_i[ii] = ai[ii]+CHUNKSIZE;} \ 121549d3d68SSatish Balay ierr = PetscMemcpy(new_j,aj,(ai[brow]+nrow)*sizeof(int));CHKERRQ(ierr); \ 12280c1aa95SSatish Balay len = (new_nz - CHUNKSIZE - ai[brow] - nrow); \ 123549d3d68SSatish Balay ierr = PetscMemcpy(new_j+ai[brow]+nrow+CHUNKSIZE,aj+ai[brow]+nrow, \ 124549d3d68SSatish Balay len*sizeof(int));CHKERRQ(ierr); \ 125549d3d68SSatish Balay ierr = PetscMemcpy(new_a,aa,(ai[brow]+nrow)*bs2*sizeof(Scalar));CHKERRQ(ierr); \ 126549d3d68SSatish Balay ierr = PetscMemzero(new_a+bs2*(ai[brow]+nrow),bs2*CHUNKSIZE*sizeof(Scalar));CHKERRQ(ierr); \ 127549d3d68SSatish Balay ierr = PetscMemcpy(new_a+bs2*(ai[brow]+nrow+CHUNKSIZE), \ 128549d3d68SSatish Balay aa+bs2*(ai[brow]+nrow),bs2*len*sizeof(Scalar));CHKERRQ(ierr); \ 12980c1aa95SSatish Balay /* free up old matrix storage */ \ 130606d414cSSatish Balay ierr = PetscFree(a->a);CHKERRQ(ierr); \ 131606d414cSSatish Balay if (!a->singlemalloc) { \ 132606d414cSSatish Balay ierr = PetscFree(a->i);CHKERRQ(ierr); \ 133606d414cSSatish Balay ierr = PetscFree(a->j);CHKERRQ(ierr);\ 134606d414cSSatish Balay } \ 13580c1aa95SSatish Balay aa = a->a = new_a; ai = a->i = new_i; aj = a->j = new_j; \ 13680c1aa95SSatish Balay a->singlemalloc = 1; \ 13780c1aa95SSatish Balay \ 13880c1aa95SSatish Balay rp = aj + ai[brow]; ap = aa + bs2*ai[brow]; \ 139ac7a638eSSatish Balay rmax = aimax[brow] = aimax[brow] + CHUNKSIZE; \ 14080c1aa95SSatish Balay PLogObjectMemory(A,CHUNKSIZE*(sizeof(int) + bs2*sizeof(Scalar))); \ 14180c1aa95SSatish Balay a->maxnz += bs2*CHUNKSIZE; \ 14280c1aa95SSatish Balay a->reallocs++; \ 14380c1aa95SSatish Balay a->nz++; \ 14480c1aa95SSatish Balay } \ 14580c1aa95SSatish Balay N = nrow++ - 1; \ 14680c1aa95SSatish Balay /* shift up all the later entries in this row */ \ 14780c1aa95SSatish Balay for ( ii=N; ii>=_i; ii-- ) { \ 14880c1aa95SSatish Balay rp[ii+1] = rp[ii]; \ 149549d3d68SSatish Balay ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(Scalar));CHKERRQ(ierr); \ 15080c1aa95SSatish Balay } \ 151549d3d68SSatish Balay if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(Scalar));CHKERRQ(ierr); } \ 15280c1aa95SSatish Balay rp[_i] = bcol; \ 15380c1aa95SSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 154ac7a638eSSatish Balay a_noinsert:; \ 15580c1aa95SSatish Balay ailen[brow] = nrow; \ 15680c1aa95SSatish Balay } 15757b952d6SSatish Balay 158ac7a638eSSatish Balay #define MatSetValues_SeqBAIJ_B_Private(row,col,value,addv) \ 159ac7a638eSSatish Balay { \ 160ac7a638eSSatish Balay \ 161ac7a638eSSatish Balay brow = row/bs; \ 162ac7a638eSSatish Balay rp = bj + bi[brow]; ap = ba + bs2*bi[brow]; \ 163ac7a638eSSatish Balay rmax = bimax[brow]; nrow = bilen[brow]; \ 164ac7a638eSSatish Balay bcol = col/bs; \ 165ac7a638eSSatish Balay ridx = row % bs; cidx = col % bs; \ 166ac7a638eSSatish Balay low = 0; high = nrow; \ 167ac7a638eSSatish Balay while (high-low > 3) { \ 168ac7a638eSSatish Balay t = (low+high)/2; \ 169ac7a638eSSatish Balay if (rp[t] > bcol) high = t; \ 170ac7a638eSSatish Balay else low = t; \ 171ac7a638eSSatish Balay } \ 172ac7a638eSSatish Balay for ( _i=low; _i<high; _i++ ) { \ 173ac7a638eSSatish Balay if (rp[_i] > bcol) break; \ 174ac7a638eSSatish Balay if (rp[_i] == bcol) { \ 175ac7a638eSSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 176ac7a638eSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 177ac7a638eSSatish Balay else *bap = value; \ 178ac7a638eSSatish Balay goto b_noinsert; \ 179ac7a638eSSatish Balay } \ 180ac7a638eSSatish Balay } \ 18189280ab3SLois Curfman McInnes if (b->nonew == 1) goto b_noinsert; \ 182a8c6a408SBarry Smith else if (b->nonew == -1) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Inserting a new nonzero into matrix"); \ 183ac7a638eSSatish Balay if (nrow >= rmax) { \ 184ac7a638eSSatish Balay /* there is no extra room in row, therefore enlarge */ \ 18574c639caSSatish Balay int new_nz = bi[b->mbs] + CHUNKSIZE,len,*new_i,*new_j; \ 186ac7a638eSSatish Balay Scalar *new_a; \ 187ac7a638eSSatish Balay \ 188a8c6a408SBarry Smith if (b->nonew == -2) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Inserting a new nonzero in the matrix"); \ 18989280ab3SLois Curfman McInnes \ 190ac7a638eSSatish Balay /* malloc new storage space */ \ 19174c639caSSatish Balay len = new_nz*(sizeof(int)+bs2*sizeof(Scalar))+(b->mbs+1)*sizeof(int); \ 192ac7a638eSSatish Balay new_a = (Scalar *) PetscMalloc( len );CHKPTRQ(new_a); \ 193ac7a638eSSatish Balay new_j = (int *) (new_a + bs2*new_nz); \ 194ac7a638eSSatish Balay new_i = new_j + new_nz; \ 195ac7a638eSSatish Balay \ 196ac7a638eSSatish Balay /* copy over old data into new slots */ \ 197ac7a638eSSatish Balay for ( ii=0; ii<brow+1; ii++ ) {new_i[ii] = bi[ii];} \ 19874c639caSSatish Balay for ( ii=brow+1; ii<b->mbs+1; ii++ ) {new_i[ii] = bi[ii]+CHUNKSIZE;} \ 199549d3d68SSatish Balay ierr = PetscMemcpy(new_j,bj,(bi[brow]+nrow)*sizeof(int));CHKERRQ(ierr); \ 200ac7a638eSSatish Balay len = (new_nz - CHUNKSIZE - bi[brow] - nrow); \ 201549d3d68SSatish Balay ierr = PetscMemcpy(new_j+bi[brow]+nrow+CHUNKSIZE,bj+bi[brow]+nrow, \ 202549d3d68SSatish Balay len*sizeof(int));CHKERRQ(ierr); \ 203549d3d68SSatish Balay ierr = PetscMemcpy(new_a,ba,(bi[brow]+nrow)*bs2*sizeof(Scalar));CHKERRQ(ierr); \ 204549d3d68SSatish Balay ierr = PetscMemzero(new_a+bs2*(bi[brow]+nrow),bs2*CHUNKSIZE*sizeof(Scalar));CHKERRQ(ierr); \ 205549d3d68SSatish Balay ierr = PetscMemcpy(new_a+bs2*(bi[brow]+nrow+CHUNKSIZE), \ 206549d3d68SSatish Balay ba+bs2*(bi[brow]+nrow),bs2*len*sizeof(Scalar));CHKERRQ(ierr); \ 207ac7a638eSSatish Balay /* free up old matrix storage */ \ 208606d414cSSatish Balay ierr = PetscFree(b->a);CHKERRQ(ierr); \ 209606d414cSSatish Balay if (!b->singlemalloc) { \ 210606d414cSSatish Balay ierr = PetscFree(b->i);CHKERRQ(ierr); \ 211606d414cSSatish Balay ierr = PetscFree(b->j);CHKERRQ(ierr); \ 212606d414cSSatish Balay } \ 21374c639caSSatish Balay ba = b->a = new_a; bi = b->i = new_i; bj = b->j = new_j; \ 21474c639caSSatish Balay b->singlemalloc = 1; \ 215ac7a638eSSatish Balay \ 216ac7a638eSSatish Balay rp = bj + bi[brow]; ap = ba + bs2*bi[brow]; \ 217ac7a638eSSatish Balay rmax = bimax[brow] = bimax[brow] + CHUNKSIZE; \ 21874c639caSSatish Balay PLogObjectMemory(B,CHUNKSIZE*(sizeof(int) + bs2*sizeof(Scalar))); \ 21974c639caSSatish Balay b->maxnz += bs2*CHUNKSIZE; \ 22074c639caSSatish Balay b->reallocs++; \ 22174c639caSSatish Balay b->nz++; \ 222ac7a638eSSatish Balay } \ 223ac7a638eSSatish Balay N = nrow++ - 1; \ 224ac7a638eSSatish Balay /* shift up all the later entries in this row */ \ 225ac7a638eSSatish Balay for ( ii=N; ii>=_i; ii-- ) { \ 226ac7a638eSSatish Balay rp[ii+1] = rp[ii]; \ 227549d3d68SSatish Balay ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(Scalar));CHKERRQ(ierr); \ 228ac7a638eSSatish Balay } \ 229549d3d68SSatish Balay if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(Scalar));CHKERRQ(ierr);} \ 230ac7a638eSSatish Balay rp[_i] = bcol; \ 231ac7a638eSSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 232ac7a638eSSatish Balay b_noinsert:; \ 233ac7a638eSSatish Balay bilen[brow] = nrow; \ 234ac7a638eSSatish Balay } 235ac7a638eSSatish Balay 2365615d1e5SSatish Balay #undef __FUNC__ 2375615d1e5SSatish Balay #define __FUNC__ "MatSetValues_MPIBAIJ" 238ec1ea8d8SLois Curfman McInnes int MatSetValues_MPIBAIJ(Mat mat,int m,int *im,int n,int *in,Scalar *v,InsertMode addv) 23957b952d6SSatish Balay { 24057b952d6SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *) mat->data; 24157b952d6SSatish Balay Scalar value; 2424fa0d573SSatish Balay int ierr,i,j,row,col; 2434fa0d573SSatish Balay int roworiented = baij->roworiented,rstart_orig=baij->rstart_bs ; 2444fa0d573SSatish Balay int rend_orig=baij->rend_bs,cstart_orig=baij->cstart_bs; 2454fa0d573SSatish Balay int cend_orig=baij->cend_bs,bs=baij->bs; 24657b952d6SSatish Balay 247eada6651SSatish Balay /* Some Variables required in the macro */ 24880c1aa95SSatish Balay Mat A = baij->A; 24980c1aa95SSatish Balay Mat_SeqBAIJ *a = (Mat_SeqBAIJ *) (A)->data; 250ac7a638eSSatish Balay int *aimax=a->imax,*ai=a->i,*ailen=a->ilen,*aj=a->j; 251ac7a638eSSatish Balay Scalar *aa=a->a; 252ac7a638eSSatish Balay 253ac7a638eSSatish Balay Mat B = baij->B; 254ac7a638eSSatish Balay Mat_SeqBAIJ *b = (Mat_SeqBAIJ *) (B)->data; 255ac7a638eSSatish Balay int *bimax=b->imax,*bi=b->i,*bilen=b->ilen,*bj=b->j; 256ac7a638eSSatish Balay Scalar *ba=b->a; 257ac7a638eSSatish Balay 258ac7a638eSSatish Balay int *rp,ii,nrow,_i,rmax,N,brow,bcol; 259ab26458aSBarry Smith int low,high,t,ridx,cidx,bs2=a->bs2; 260ac7a638eSSatish Balay Scalar *ap,*bap; 26180c1aa95SSatish Balay 262d64ed03dSBarry Smith PetscFunctionBegin; 26357b952d6SSatish Balay for ( i=0; i<m; i++ ) { 2645ef9f2a5SBarry Smith if (im[i] < 0) continue; 265aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g) 266a8c6a408SBarry Smith if (im[i] >= baij->M) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Row too large"); 267639f9d9dSBarry Smith #endif 26857b952d6SSatish Balay if (im[i] >= rstart_orig && im[i] < rend_orig) { 26957b952d6SSatish Balay row = im[i] - rstart_orig; 27057b952d6SSatish Balay for ( j=0; j<n; j++ ) { 27157b952d6SSatish Balay if (in[j] >= cstart_orig && in[j] < cend_orig){ 27257b952d6SSatish Balay col = in[j] - cstart_orig; 27357b952d6SSatish Balay if (roworiented) value = v[i*n+j]; else value = v[i+j*m]; 274f5e9677aSSatish Balay MatSetValues_SeqBAIJ_A_Private(row,col,value,addv); 27580c1aa95SSatish Balay /* ierr = MatSetValues_SeqBAIJ(baij->A,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 27673959e64SBarry Smith } else if (in[j] < 0) continue; 277aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g) 278a8c6a408SBarry Smith else if (in[j] >= baij->N) {SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Col too large");} 279639f9d9dSBarry Smith #endif 28057b952d6SSatish Balay else { 28157b952d6SSatish Balay if (mat->was_assembled) { 282905e6a2fSBarry Smith if (!baij->colmap) { 283905e6a2fSBarry Smith ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 284905e6a2fSBarry Smith } 285aa482453SBarry Smith #if defined (PETSC_USE_CTABLE) 286fa46199cSSatish Balay ierr = TableFind(baij->colmap, in[j]/bs + 1,&col);CHKERRQ(ierr); 287fa46199cSSatish Balay col = col - 1 + in[j]%bs; 28848e59246SSatish Balay #else 289905e6a2fSBarry Smith col = baij->colmap[in[j]/bs] - 1 + in[j]%bs; 29048e59246SSatish Balay #endif 29157b952d6SSatish Balay if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) { 29257b952d6SSatish Balay ierr = DisAssemble_MPIBAIJ(mat);CHKERRQ(ierr); 29357b952d6SSatish Balay col = in[j]; 2949bf004c3SSatish Balay /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */ 2959bf004c3SSatish Balay B = baij->B; 2969bf004c3SSatish Balay b = (Mat_SeqBAIJ *) (B)->data; 2979bf004c3SSatish Balay bimax=b->imax;bi=b->i;bilen=b->ilen;bj=b->j; 2989bf004c3SSatish Balay ba=b->a; 29957b952d6SSatish Balay } 300d64ed03dSBarry Smith } else col = in[j]; 30157b952d6SSatish Balay if (roworiented) value = v[i*n+j]; else value = v[i+j*m]; 302ac7a638eSSatish Balay MatSetValues_SeqBAIJ_B_Private(row,col,value,addv); 303ac7a638eSSatish Balay /* ierr = MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 30457b952d6SSatish Balay } 30557b952d6SSatish Balay } 306d64ed03dSBarry Smith } else { 30790f02eecSBarry Smith if ( !baij->donotstash) { 308ff2fd236SBarry Smith if (roworiented) { 3098798bf22SSatish Balay ierr = MatStashValuesRow_Private(&mat->stash,im[i],n,in,v+i*n);CHKERRQ(ierr); 310ff2fd236SBarry Smith } else { 3118798bf22SSatish Balay ierr = MatStashValuesCol_Private(&mat->stash,im[i],n,in,v+i,m);CHKERRQ(ierr); 31257b952d6SSatish Balay } 31357b952d6SSatish Balay } 31457b952d6SSatish Balay } 31590f02eecSBarry Smith } 3163a40ed3dSBarry Smith PetscFunctionReturn(0); 31757b952d6SSatish Balay } 31857b952d6SSatish Balay 319ab26458aSBarry Smith #undef __FUNC__ 320ab26458aSBarry Smith #define __FUNC__ "MatSetValuesBlocked_MPIBAIJ" 321ec1ea8d8SLois Curfman McInnes int MatSetValuesBlocked_MPIBAIJ(Mat mat,int m,int *im,int n,int *in,Scalar *v,InsertMode addv) 322ab26458aSBarry Smith { 323ab26458aSBarry Smith Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *) mat->data; 32430793edcSSatish Balay Scalar *value,*barray=baij->barray; 3257ef1d9bdSSatish Balay int ierr,i,j,ii,jj,row,col; 326ab26458aSBarry Smith int roworiented = baij->roworiented,rstart=baij->rstart ; 327ab26458aSBarry Smith int rend=baij->rend,cstart=baij->cstart,stepval; 328ab26458aSBarry Smith int cend=baij->cend,bs=baij->bs,bs2=baij->bs2; 329ab26458aSBarry Smith 33030793edcSSatish Balay if(!barray) { 33147513183SBarry Smith baij->barray = barray = (Scalar*) PetscMalloc(bs2*sizeof(Scalar));CHKPTRQ(barray); 33230793edcSSatish Balay } 33330793edcSSatish Balay 334ab26458aSBarry Smith if (roworiented) { 335ab26458aSBarry Smith stepval = (n-1)*bs; 336ab26458aSBarry Smith } else { 337ab26458aSBarry Smith stepval = (m-1)*bs; 338ab26458aSBarry Smith } 339ab26458aSBarry Smith for ( i=0; i<m; i++ ) { 3405ef9f2a5SBarry Smith if (im[i] < 0) continue; 341aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g) 3425ef9f2a5SBarry Smith if (im[i] >= baij->Mbs) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,0,"Row too large, row %d max %d",im[i],baij->Mbs); 343ab26458aSBarry Smith #endif 344ab26458aSBarry Smith if (im[i] >= rstart && im[i] < rend) { 345ab26458aSBarry Smith row = im[i] - rstart; 346ab26458aSBarry Smith for ( j=0; j<n; j++ ) { 34715b57d14SSatish Balay /* If NumCol = 1 then a copy is not required */ 34815b57d14SSatish Balay if ((roworiented) && (n == 1)) { 34915b57d14SSatish Balay barray = v + i*bs2; 35015b57d14SSatish Balay } else if((!roworiented) && (m == 1)) { 35115b57d14SSatish Balay barray = v + j*bs2; 35215b57d14SSatish Balay } else { /* Here a copy is required */ 353ab26458aSBarry Smith if (roworiented) { 354ab26458aSBarry Smith value = v + i*(stepval+bs)*bs + j*bs; 355ab26458aSBarry Smith } else { 356ab26458aSBarry Smith value = v + j*(stepval+bs)*bs + i*bs; 357abef11f7SSatish Balay } 35847513183SBarry Smith for ( ii=0; ii<bs; ii++,value+=stepval ) { 35947513183SBarry Smith for (jj=0; jj<bs; jj++ ) { 36030793edcSSatish Balay *barray++ = *value++; 36147513183SBarry Smith } 36247513183SBarry Smith } 36330793edcSSatish Balay barray -=bs2; 36415b57d14SSatish Balay } 365abef11f7SSatish Balay 366abef11f7SSatish Balay if (in[j] >= cstart && in[j] < cend){ 367abef11f7SSatish Balay col = in[j] - cstart; 36830793edcSSatish Balay ierr = MatSetValuesBlocked_SeqBAIJ(baij->A,1,&row,1,&col,barray,addv);CHKERRQ(ierr); 369ab26458aSBarry Smith } 3705ef9f2a5SBarry Smith else if (in[j] < 0) continue; 371aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g) 3725ef9f2a5SBarry Smith else if (in[j] >= baij->Nbs) {SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,0,"Column too large, col %d max %d",in[j],baij->Nbs);} 373ab26458aSBarry Smith #endif 374ab26458aSBarry Smith else { 375ab26458aSBarry Smith if (mat->was_assembled) { 376ab26458aSBarry Smith if (!baij->colmap) { 377ab26458aSBarry Smith ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 378ab26458aSBarry Smith } 379a5eb4965SSatish Balay 380aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g) 381aa482453SBarry Smith #if defined (PETSC_USE_CTABLE) 382fa46199cSSatish Balay { int data; 383fa46199cSSatish Balay ierr = TableFind(baij->colmap,in[j]+1,&data);CHKERRQ(ierr); 384fa46199cSSatish Balay if((data - 1) % bs) 38548e59246SSatish Balay {SETERRQ(PETSC_ERR_PLIB,0,"Incorrect colmap");} 386fa46199cSSatish Balay } 38748e59246SSatish Balay #else 388a8c6a408SBarry Smith if ((baij->colmap[in[j]] - 1) % bs) {SETERRQ(PETSC_ERR_PLIB,0,"Incorrect colmap");} 389a5eb4965SSatish Balay #endif 39048e59246SSatish Balay #endif 391aa482453SBarry Smith #if defined (PETSC_USE_CTABLE) 392fa46199cSSatish Balay ierr = TableFind(baij->colmap,in[j]+1,&col);CHKERRQ(ierr); 393fa46199cSSatish Balay col = (col - 1)/bs; 39448e59246SSatish Balay #else 395a5eb4965SSatish Balay col = (baij->colmap[in[j]] - 1)/bs; 39648e59246SSatish Balay #endif 397ab26458aSBarry Smith if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) { 398ab26458aSBarry Smith ierr = DisAssemble_MPIBAIJ(mat);CHKERRQ(ierr); 399ab26458aSBarry Smith col = in[j]; 400ab26458aSBarry Smith } 401ab26458aSBarry Smith } 402ab26458aSBarry Smith else col = in[j]; 40330793edcSSatish Balay ierr = MatSetValuesBlocked_SeqBAIJ(baij->B,1,&row,1,&col,barray,addv);CHKERRQ(ierr); 404ab26458aSBarry Smith } 405ab26458aSBarry Smith } 406d64ed03dSBarry Smith } else { 407ab26458aSBarry Smith if (!baij->donotstash) { 408ff2fd236SBarry Smith if (roworiented) { 4098798bf22SSatish Balay ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 410ff2fd236SBarry Smith } else { 4118798bf22SSatish Balay ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 412ff2fd236SBarry Smith } 413abef11f7SSatish Balay } 414ab26458aSBarry Smith } 415ab26458aSBarry Smith } 4163a40ed3dSBarry Smith PetscFunctionReturn(0); 417ab26458aSBarry Smith } 4180bdbc534SSatish Balay #define HASH_KEY 0.6180339887 419c2760754SSatish Balay /* #define HASH1(size,key) ((int)((size)*fmod(((key)*HASH_KEY),1))) */ 420c2760754SSatish Balay #define HASH(size,key,tmp) (tmp = (key)*HASH_KEY,(int)((size)*(tmp-(int)tmp))) 421c2760754SSatish Balay /* #define HASH(size,key,tmp) ((int)((size)*fmod(((key)*HASH_KEY),1))) */ 4225615d1e5SSatish Balay #undef __FUNC__ 4230bdbc534SSatish Balay #define __FUNC__ "MatSetValues_MPIBAIJ_HT" 4240bdbc534SSatish Balay int MatSetValues_MPIBAIJ_HT(Mat mat,int m,int *im,int n,int *in,Scalar *v,InsertMode addv) 4250bdbc534SSatish Balay { 4260bdbc534SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *) mat->data; 4270bdbc534SSatish Balay int ierr,i,j,row,col; 4280bdbc534SSatish Balay int roworiented = baij->roworiented,rstart_orig=baij->rstart_bs ; 429c2760754SSatish Balay int rend_orig=baij->rend_bs,Nbs=baij->Nbs; 430c2760754SSatish Balay int h1,key,size=baij->ht_size,bs=baij->bs,*HT=baij->ht,idx; 431c2760754SSatish Balay double tmp; 432b9e4cc15SSatish Balay Scalar ** HD = baij->hd,value; 433aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g) 4344a15367fSSatish Balay int total_ct=baij->ht_total_ct,insert_ct=baij->ht_insert_ct; 4354a15367fSSatish Balay #endif 4360bdbc534SSatish Balay 4370bdbc534SSatish Balay PetscFunctionBegin; 4380bdbc534SSatish Balay 4390bdbc534SSatish Balay for ( i=0; i<m; i++ ) { 440aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g) 4410bdbc534SSatish Balay if (im[i] < 0) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Negative row"); 4420bdbc534SSatish Balay if (im[i] >= baij->M) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Row too large"); 4430bdbc534SSatish Balay #endif 4440bdbc534SSatish Balay row = im[i]; 445c2760754SSatish Balay if (row >= rstart_orig && row < rend_orig) { 4460bdbc534SSatish Balay for ( j=0; j<n; j++ ) { 4470bdbc534SSatish Balay col = in[j]; 4480bdbc534SSatish Balay if (roworiented) value = v[i*n+j]; else value = v[i+j*m]; 4490bdbc534SSatish Balay /* Look up into the Hash Table */ 450c2760754SSatish Balay key = (row/bs)*Nbs+(col/bs)+1; 451c2760754SSatish Balay h1 = HASH(size,key,tmp); 4520bdbc534SSatish Balay 453c2760754SSatish Balay 454c2760754SSatish Balay idx = h1; 455aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g) 456187ce0cbSSatish Balay insert_ct++; 457187ce0cbSSatish Balay total_ct++; 458187ce0cbSSatish Balay if (HT[idx] != key) { 459187ce0cbSSatish Balay for ( idx=h1; (idx<size) && (HT[idx]!=key); idx++,total_ct++); 460187ce0cbSSatish Balay if (idx == size) { 461187ce0cbSSatish Balay for ( idx=0; (idx<h1) && (HT[idx]!=key); idx++,total_ct++); 462187ce0cbSSatish Balay if (idx == h1) { 463187ce0cbSSatish Balay SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"(row,col) has no entry in the hash table"); 464187ce0cbSSatish Balay } 465187ce0cbSSatish Balay } 466187ce0cbSSatish Balay } 467187ce0cbSSatish Balay #else 468c2760754SSatish Balay if (HT[idx] != key) { 469c2760754SSatish Balay for ( idx=h1; (idx<size) && (HT[idx]!=key); idx++); 470c2760754SSatish Balay if (idx == size) { 471c2760754SSatish Balay for ( idx=0; (idx<h1) && (HT[idx]!=key); idx++); 472c2760754SSatish Balay if (idx == h1) { 473c2760754SSatish Balay SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"(row,col) has no entry in the hash table"); 474c2760754SSatish Balay } 475c2760754SSatish Balay } 476c2760754SSatish Balay } 477187ce0cbSSatish Balay #endif 478c2760754SSatish Balay /* A HASH table entry is found, so insert the values at the correct address */ 479c2760754SSatish Balay if (addv == ADD_VALUES) *(HD[idx]+ (col % bs)*bs + (row % bs)) += value; 480c2760754SSatish Balay else *(HD[idx]+ (col % bs)*bs + (row % bs)) = value; 4810bdbc534SSatish Balay } 4820bdbc534SSatish Balay } else { 4830bdbc534SSatish Balay if (!baij->donotstash) { 484ff2fd236SBarry Smith if (roworiented) { 4858798bf22SSatish Balay ierr = MatStashValuesRow_Private(&mat->stash,im[i],n,in,v+i*n);CHKERRQ(ierr); 486ff2fd236SBarry Smith } else { 4878798bf22SSatish Balay ierr = MatStashValuesCol_Private(&mat->stash,im[i],n,in,v+i,m);CHKERRQ(ierr); 4880bdbc534SSatish Balay } 4890bdbc534SSatish Balay } 4900bdbc534SSatish Balay } 4910bdbc534SSatish Balay } 492aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g) 493187ce0cbSSatish Balay baij->ht_total_ct = total_ct; 494187ce0cbSSatish Balay baij->ht_insert_ct = insert_ct; 495187ce0cbSSatish Balay #endif 4960bdbc534SSatish Balay PetscFunctionReturn(0); 4970bdbc534SSatish Balay } 4980bdbc534SSatish Balay 4990bdbc534SSatish Balay #undef __FUNC__ 5000bdbc534SSatish Balay #define __FUNC__ "MatSetValuesBlocked_MPIBAIJ_HT" 5010bdbc534SSatish Balay int MatSetValuesBlocked_MPIBAIJ_HT(Mat mat,int m,int *im,int n,int *in,Scalar *v,InsertMode addv) 5020bdbc534SSatish Balay { 5030bdbc534SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *) mat->data; 5048798bf22SSatish Balay int ierr,i,j,ii,jj,row,col; 5050bdbc534SSatish Balay int roworiented = baij->roworiented,rstart=baij->rstart ; 506b4cc0f5aSSatish Balay int rend=baij->rend,stepval,bs=baij->bs,bs2=baij->bs2; 507c2760754SSatish Balay int h1,key,size=baij->ht_size,idx,*HT=baij->ht,Nbs=baij->Nbs; 508c2760754SSatish Balay double tmp; 509187ce0cbSSatish Balay Scalar ** HD = baij->hd,*value,*v_t,*baij_a; 510aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g) 5114a15367fSSatish Balay int total_ct=baij->ht_total_ct,insert_ct=baij->ht_insert_ct; 5124a15367fSSatish Balay #endif 5130bdbc534SSatish Balay 514d0a41580SSatish Balay PetscFunctionBegin; 515d0a41580SSatish Balay 5160bdbc534SSatish Balay if (roworiented) { 5170bdbc534SSatish Balay stepval = (n-1)*bs; 5180bdbc534SSatish Balay } else { 5190bdbc534SSatish Balay stepval = (m-1)*bs; 5200bdbc534SSatish Balay } 5210bdbc534SSatish Balay for ( i=0; i<m; i++ ) { 522aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g) 5230bdbc534SSatish Balay if (im[i] < 0) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Negative row"); 5240bdbc534SSatish Balay if (im[i] >= baij->Mbs) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Row too large"); 5250bdbc534SSatish Balay #endif 5260bdbc534SSatish Balay row = im[i]; 527187ce0cbSSatish Balay v_t = v + i*bs2; 528c2760754SSatish Balay if (row >= rstart && row < rend) { 5290bdbc534SSatish Balay for ( j=0; j<n; j++ ) { 5300bdbc534SSatish Balay col = in[j]; 5310bdbc534SSatish Balay 5320bdbc534SSatish Balay /* Look up into the Hash Table */ 533c2760754SSatish Balay key = row*Nbs+col+1; 534c2760754SSatish Balay h1 = HASH(size,key,tmp); 5350bdbc534SSatish Balay 536c2760754SSatish Balay idx = h1; 537aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g) 538187ce0cbSSatish Balay total_ct++; 539187ce0cbSSatish Balay insert_ct++; 540187ce0cbSSatish Balay if (HT[idx] != key) { 541187ce0cbSSatish Balay for ( idx=h1; (idx<size) && (HT[idx]!=key); idx++,total_ct++); 542187ce0cbSSatish Balay if (idx == size) { 543187ce0cbSSatish Balay for ( idx=0; (idx<h1) && (HT[idx]!=key); idx++,total_ct++); 544187ce0cbSSatish Balay if (idx == h1) { 545187ce0cbSSatish Balay SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"(row,col) has no entry in the hash table"); 546187ce0cbSSatish Balay } 547187ce0cbSSatish Balay } 548187ce0cbSSatish Balay } 549187ce0cbSSatish Balay #else 550c2760754SSatish Balay if (HT[idx] != key) { 551c2760754SSatish Balay for ( idx=h1; (idx<size) && (HT[idx]!=key); idx++); 552c2760754SSatish Balay if (idx == size) { 553c2760754SSatish Balay for ( idx=0; (idx<h1) && (HT[idx]!=key); idx++); 554c2760754SSatish Balay if (idx == h1) { 555c2760754SSatish Balay SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"(row,col) has no entry in the hash table"); 556c2760754SSatish Balay } 557c2760754SSatish Balay } 558c2760754SSatish Balay } 559187ce0cbSSatish Balay #endif 560c2760754SSatish Balay baij_a = HD[idx]; 5610bdbc534SSatish Balay if (roworiented) { 562c2760754SSatish Balay /*value = v + i*(stepval+bs)*bs + j*bs;*/ 563187ce0cbSSatish Balay /* value = v + (i*(stepval+bs)+j)*bs; */ 564187ce0cbSSatish Balay value = v_t; 565187ce0cbSSatish Balay v_t += bs; 566fef45726SSatish Balay if (addv == ADD_VALUES) { 567c2760754SSatish Balay for ( ii=0; ii<bs; ii++,value+=stepval) { 568c2760754SSatish Balay for ( jj=ii; jj<bs2; jj+=bs ) { 569fef45726SSatish Balay baij_a[jj] += *value++; 570b4cc0f5aSSatish Balay } 571b4cc0f5aSSatish Balay } 572fef45726SSatish Balay } else { 573c2760754SSatish Balay for ( ii=0; ii<bs; ii++,value+=stepval) { 574c2760754SSatish Balay for ( jj=ii; jj<bs2; jj+=bs ) { 575fef45726SSatish Balay baij_a[jj] = *value++; 576fef45726SSatish Balay } 577fef45726SSatish Balay } 578fef45726SSatish Balay } 5790bdbc534SSatish Balay } else { 5800bdbc534SSatish Balay value = v + j*(stepval+bs)*bs + i*bs; 581fef45726SSatish Balay if (addv == ADD_VALUES) { 582b4cc0f5aSSatish Balay for ( ii=0; ii<bs; ii++,value+=stepval,baij_a+=bs ) { 5830bdbc534SSatish Balay for ( jj=0; jj<bs; jj++ ) { 584fef45726SSatish Balay baij_a[jj] += *value++; 585fef45726SSatish Balay } 586fef45726SSatish Balay } 587fef45726SSatish Balay } else { 588fef45726SSatish Balay for ( ii=0; ii<bs; ii++,value+=stepval,baij_a+=bs ) { 589fef45726SSatish Balay for ( jj=0; jj<bs; jj++ ) { 590fef45726SSatish Balay baij_a[jj] = *value++; 591fef45726SSatish Balay } 592b4cc0f5aSSatish Balay } 5930bdbc534SSatish Balay } 5940bdbc534SSatish Balay } 5950bdbc534SSatish Balay } 5960bdbc534SSatish Balay } else { 5970bdbc534SSatish Balay if (!baij->donotstash) { 5980bdbc534SSatish Balay if (roworiented) { 5998798bf22SSatish Balay ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 6000bdbc534SSatish Balay } else { 6018798bf22SSatish Balay ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 6020bdbc534SSatish Balay } 6030bdbc534SSatish Balay } 6040bdbc534SSatish Balay } 6050bdbc534SSatish Balay } 606aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g) 607187ce0cbSSatish Balay baij->ht_total_ct = total_ct; 608187ce0cbSSatish Balay baij->ht_insert_ct = insert_ct; 609187ce0cbSSatish Balay #endif 6100bdbc534SSatish Balay PetscFunctionReturn(0); 6110bdbc534SSatish Balay } 612133cdb44SSatish Balay 6130bdbc534SSatish Balay #undef __FUNC__ 6145615d1e5SSatish Balay #define __FUNC__ "MatGetValues_MPIBAIJ" 615ec1ea8d8SLois Curfman McInnes int MatGetValues_MPIBAIJ(Mat mat,int m,int *idxm,int n,int *idxn,Scalar *v) 616d6de1c52SSatish Balay { 617d6de1c52SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *) mat->data; 618d6de1c52SSatish Balay int bs=baij->bs,ierr,i,j, bsrstart = baij->rstart*bs, bsrend = baij->rend*bs; 61948e59246SSatish Balay int bscstart = baij->cstart*bs, bscend = baij->cend*bs,row,col,data; 620d6de1c52SSatish Balay 621133cdb44SSatish Balay PetscFunctionBegin; 622d6de1c52SSatish Balay for ( i=0; i<m; i++ ) { 623a8c6a408SBarry Smith if (idxm[i] < 0) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Negative row"); 624a8c6a408SBarry Smith if (idxm[i] >= baij->M) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Row too large"); 625d6de1c52SSatish Balay if (idxm[i] >= bsrstart && idxm[i] < bsrend) { 626d6de1c52SSatish Balay row = idxm[i] - bsrstart; 627d6de1c52SSatish Balay for ( j=0; j<n; j++ ) { 628a8c6a408SBarry Smith if (idxn[j] < 0) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Negative column"); 629a8c6a408SBarry Smith if (idxn[j] >= baij->N) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Column too large"); 630d6de1c52SSatish Balay if (idxn[j] >= bscstart && idxn[j] < bscend){ 631d6de1c52SSatish Balay col = idxn[j] - bscstart; 63298dd23e9SBarry Smith ierr = MatGetValues_SeqBAIJ(baij->A,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr); 633d64ed03dSBarry Smith } else { 634905e6a2fSBarry Smith if (!baij->colmap) { 635905e6a2fSBarry Smith ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 636905e6a2fSBarry Smith } 637aa482453SBarry Smith #if defined (PETSC_USE_CTABLE) 638fa46199cSSatish Balay ierr = TableFind(baij->colmap,idxn[j]/bs+1,&data);CHKERRQ(ierr); 639fa46199cSSatish Balay data --; 64048e59246SSatish Balay #else 64148e59246SSatish Balay data = baij->colmap[idxn[j]/bs]-1; 64248e59246SSatish Balay #endif 64348e59246SSatish Balay if((data < 0) || (baij->garray[data/bs] != idxn[j]/bs)) *(v+i*n+j) = 0.0; 644d9d09a02SSatish Balay else { 64548e59246SSatish Balay col = data + idxn[j]%bs; 64698dd23e9SBarry Smith ierr = MatGetValues_SeqBAIJ(baij->B,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr); 647d6de1c52SSatish Balay } 648d6de1c52SSatish Balay } 649d6de1c52SSatish Balay } 650d64ed03dSBarry Smith } else { 651a8c6a408SBarry Smith SETERRQ(PETSC_ERR_SUP,0,"Only local values currently supported"); 652d6de1c52SSatish Balay } 653d6de1c52SSatish Balay } 6543a40ed3dSBarry Smith PetscFunctionReturn(0); 655d6de1c52SSatish Balay } 656d6de1c52SSatish Balay 6575615d1e5SSatish Balay #undef __FUNC__ 6585615d1e5SSatish Balay #define __FUNC__ "MatNorm_MPIBAIJ" 659ec1ea8d8SLois Curfman McInnes int MatNorm_MPIBAIJ(Mat mat,NormType type,double *norm) 660d6de1c52SSatish Balay { 661d6de1c52SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *) mat->data; 662d6de1c52SSatish Balay Mat_SeqBAIJ *amat = (Mat_SeqBAIJ*) baij->A->data, *bmat = (Mat_SeqBAIJ*) baij->B->data; 663acdf5bf4SSatish Balay int ierr, i,bs2=baij->bs2; 664d6de1c52SSatish Balay double sum = 0.0; 665d6de1c52SSatish Balay Scalar *v; 666d6de1c52SSatish Balay 667d64ed03dSBarry Smith PetscFunctionBegin; 668d6de1c52SSatish Balay if (baij->size == 1) { 669d6de1c52SSatish Balay ierr = MatNorm(baij->A,type,norm);CHKERRQ(ierr); 670d6de1c52SSatish Balay } else { 671d6de1c52SSatish Balay if (type == NORM_FROBENIUS) { 672d6de1c52SSatish Balay v = amat->a; 673d6de1c52SSatish Balay for (i=0; i<amat->nz*bs2; i++ ) { 674aa482453SBarry Smith #if defined(PETSC_USE_COMPLEX) 675e20fef11SSatish Balay sum += PetscReal(PetscConj(*v)*(*v)); v++; 676d6de1c52SSatish Balay #else 677d6de1c52SSatish Balay sum += (*v)*(*v); v++; 678d6de1c52SSatish Balay #endif 679d6de1c52SSatish Balay } 680d6de1c52SSatish Balay v = bmat->a; 681d6de1c52SSatish Balay for (i=0; i<bmat->nz*bs2; i++ ) { 682aa482453SBarry Smith #if defined(PETSC_USE_COMPLEX) 683e20fef11SSatish Balay sum += PetscReal(PetscConj(*v)*(*v)); v++; 684d6de1c52SSatish Balay #else 685d6de1c52SSatish Balay sum += (*v)*(*v); v++; 686d6de1c52SSatish Balay #endif 687d6de1c52SSatish Balay } 688ca161407SBarry Smith ierr = MPI_Allreduce(&sum,norm,1,MPI_DOUBLE,MPI_SUM,mat->comm);CHKERRQ(ierr); 689d6de1c52SSatish Balay *norm = sqrt(*norm); 690d64ed03dSBarry Smith } else { 691e3372554SBarry Smith SETERRQ(PETSC_ERR_SUP,0,"No support for this norm yet"); 692d6de1c52SSatish Balay } 693d64ed03dSBarry Smith } 6943a40ed3dSBarry Smith PetscFunctionReturn(0); 695d6de1c52SSatish Balay } 69657b952d6SSatish Balay 697bd7f49f5SSatish Balay 698fef45726SSatish Balay /* 699fef45726SSatish Balay Creates the hash table, and sets the table 700fef45726SSatish Balay This table is created only once. 701fef45726SSatish Balay If new entried need to be added to the matrix 702fef45726SSatish Balay then the hash table has to be destroyed and 703fef45726SSatish Balay recreated. 704fef45726SSatish Balay */ 705fef45726SSatish Balay #undef __FUNC__ 706fef45726SSatish Balay #define __FUNC__ "MatCreateHashTable_MPIBAIJ_Private" 707d0a41580SSatish Balay int MatCreateHashTable_MPIBAIJ_Private(Mat mat,double factor) 708596b8d2eSBarry Smith { 709596b8d2eSBarry Smith Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *) mat->data; 710596b8d2eSBarry Smith Mat A = baij->A, B=baij->B; 711596b8d2eSBarry Smith Mat_SeqBAIJ *a=(Mat_SeqBAIJ *)A->data, *b=(Mat_SeqBAIJ *)B->data; 7120bdbc534SSatish Balay int i,j,k,nz=a->nz+b->nz,h1,*ai=a->i,*aj=a->j,*bi=b->i,*bj=b->j; 713549d3d68SSatish Balay int size,bs2=baij->bs2,rstart=baij->rstart,ierr; 714187ce0cbSSatish Balay int cstart=baij->cstart,*garray=baij->garray,row,col,Nbs=baij->Nbs; 715fef45726SSatish Balay int *HT,key; 7160bdbc534SSatish Balay Scalar **HD; 717c2760754SSatish Balay double tmp; 718aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g) 7194a15367fSSatish Balay int ct=0,max=0; 7204a15367fSSatish Balay #endif 721fef45726SSatish Balay 722d64ed03dSBarry Smith PetscFunctionBegin; 7230bdbc534SSatish Balay baij->ht_size=(int)(factor*nz); 7240bdbc534SSatish Balay size = baij->ht_size; 725fef45726SSatish Balay 7260bdbc534SSatish Balay if (baij->ht) { 7270bdbc534SSatish Balay PetscFunctionReturn(0); 728596b8d2eSBarry Smith } 7290bdbc534SSatish Balay 730fef45726SSatish Balay /* Allocate Memory for Hash Table */ 731b9e4cc15SSatish Balay baij->hd = (Scalar**)PetscMalloc((size)*(sizeof(int)+sizeof(Scalar*))+1);CHKPTRQ(baij->hd); 732b9e4cc15SSatish Balay baij->ht = (int*)(baij->hd + size); 733b9e4cc15SSatish Balay HD = baij->hd; 734a07cd24cSSatish Balay HT = baij->ht; 735b9e4cc15SSatish Balay 736b9e4cc15SSatish Balay 737549d3d68SSatish Balay ierr = PetscMemzero(HD,size*(sizeof(int)+sizeof(Scalar*)));CHKERRQ(ierr); 7380bdbc534SSatish Balay 739596b8d2eSBarry Smith 740596b8d2eSBarry Smith /* Loop Over A */ 7410bdbc534SSatish Balay for ( i=0; i<a->mbs; i++ ) { 742596b8d2eSBarry Smith for ( j=ai[i]; j<ai[i+1]; j++ ) { 7430bdbc534SSatish Balay row = i+rstart; 7440bdbc534SSatish Balay col = aj[j]+cstart; 745596b8d2eSBarry Smith 746187ce0cbSSatish Balay key = row*Nbs + col + 1; 747c2760754SSatish Balay h1 = HASH(size,key,tmp); 7480bdbc534SSatish Balay for ( k=0; k<size; k++ ){ 7490bdbc534SSatish Balay if (HT[(h1+k)%size] == 0.0) { 7500bdbc534SSatish Balay HT[(h1+k)%size] = key; 7510bdbc534SSatish Balay HD[(h1+k)%size] = a->a + j*bs2; 752596b8d2eSBarry Smith break; 753aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g) 754187ce0cbSSatish Balay } else { 755187ce0cbSSatish Balay ct++; 756187ce0cbSSatish Balay #endif 757596b8d2eSBarry Smith } 758187ce0cbSSatish Balay } 759aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g) 760187ce0cbSSatish Balay if (k> max) max = k; 761187ce0cbSSatish Balay #endif 762596b8d2eSBarry Smith } 763596b8d2eSBarry Smith } 764596b8d2eSBarry Smith /* Loop Over B */ 7650bdbc534SSatish Balay for ( i=0; i<b->mbs; i++ ) { 766596b8d2eSBarry Smith for ( j=bi[i]; j<bi[i+1]; j++ ) { 7670bdbc534SSatish Balay row = i+rstart; 7680bdbc534SSatish Balay col = garray[bj[j]]; 769187ce0cbSSatish Balay key = row*Nbs + col + 1; 770c2760754SSatish Balay h1 = HASH(size,key,tmp); 7710bdbc534SSatish Balay for ( k=0; k<size; k++ ){ 7720bdbc534SSatish Balay if (HT[(h1+k)%size] == 0.0) { 7730bdbc534SSatish Balay HT[(h1+k)%size] = key; 7740bdbc534SSatish Balay HD[(h1+k)%size] = b->a + j*bs2; 775596b8d2eSBarry Smith break; 776aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g) 777187ce0cbSSatish Balay } else { 778187ce0cbSSatish Balay ct++; 779187ce0cbSSatish Balay #endif 780596b8d2eSBarry Smith } 781187ce0cbSSatish Balay } 782aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g) 783187ce0cbSSatish Balay if (k> max) max = k; 784187ce0cbSSatish Balay #endif 785596b8d2eSBarry Smith } 786596b8d2eSBarry Smith } 787596b8d2eSBarry Smith 788596b8d2eSBarry Smith /* Print Summary */ 789aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g) 790c2760754SSatish Balay for ( i=0,j=0; i<size; i++) 791596b8d2eSBarry Smith if (HT[i]) {j++;} 792187ce0cbSSatish Balay PLogInfo(0,"MatCreateHashTable_MPIBAIJ_Private: Average Search = %5.2f,max search = %d\n", 793187ce0cbSSatish Balay (j== 0)? 0.0:((double)(ct+j))/j,max); 794187ce0cbSSatish Balay #endif 7953a40ed3dSBarry Smith PetscFunctionReturn(0); 796596b8d2eSBarry Smith } 79757b952d6SSatish Balay 798bbb85fb3SSatish Balay #undef __FUNC__ 799bbb85fb3SSatish Balay #define __FUNC__ "MatAssemblyBegin_MPIBAIJ" 800bbb85fb3SSatish Balay int MatAssemblyBegin_MPIBAIJ(Mat mat,MatAssemblyType mode) 801bbb85fb3SSatish Balay { 802bbb85fb3SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *) mat->data; 803ff2fd236SBarry Smith int ierr,nstash,reallocs; 804bbb85fb3SSatish Balay InsertMode addv; 805bbb85fb3SSatish Balay 806bbb85fb3SSatish Balay PetscFunctionBegin; 807bbb85fb3SSatish Balay if (baij->donotstash) { 808bbb85fb3SSatish Balay PetscFunctionReturn(0); 809bbb85fb3SSatish Balay } 810bbb85fb3SSatish Balay 811bbb85fb3SSatish Balay /* make sure all processors are either in INSERTMODE or ADDMODE */ 812bbb85fb3SSatish Balay ierr = MPI_Allreduce(&mat->insertmode,&addv,1,MPI_INT,MPI_BOR,mat->comm);CHKERRQ(ierr); 813bbb85fb3SSatish Balay if (addv == (ADD_VALUES|INSERT_VALUES)) { 814bbb85fb3SSatish Balay SETERRQ(PETSC_ERR_ARG_WRONGSTATE,0,"Some processors inserted others added"); 815bbb85fb3SSatish Balay } 816bbb85fb3SSatish Balay mat->insertmode = addv; /* in case this processor had no cache */ 817bbb85fb3SSatish Balay 8188798bf22SSatish Balay ierr = MatStashScatterBegin_Private(&mat->stash,baij->rowners_bs);CHKERRQ(ierr); 8198798bf22SSatish Balay ierr = MatStashScatterBegin_Private(&mat->bstash,baij->rowners);CHKERRQ(ierr); 8208798bf22SSatish Balay ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr); 8215a655dc6SBarry Smith PLogInfo(0,"MatAssemblyBegin_MPIBAIJ:Stash has %d entries, uses %d mallocs.\n",nstash,reallocs); 8228798bf22SSatish Balay ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr); 8235a655dc6SBarry Smith PLogInfo(0,"MatAssemblyBegin_MPIBAIJ:Block-Stash has %d entries, uses %d mallocs.\n",nstash,reallocs); 824bbb85fb3SSatish Balay PetscFunctionReturn(0); 825bbb85fb3SSatish Balay } 826bbb85fb3SSatish Balay 827bbb85fb3SSatish Balay #undef __FUNC__ 828bbb85fb3SSatish Balay #define __FUNC__ "MatAssemblyEnd_MPIBAIJ" 829bbb85fb3SSatish Balay int MatAssemblyEnd_MPIBAIJ(Mat mat,MatAssemblyType mode) 830bbb85fb3SSatish Balay { 831bbb85fb3SSatish Balay Mat_MPIBAIJ *baij=(Mat_MPIBAIJ *) mat->data; 832a2d1c673SSatish Balay Mat_SeqBAIJ *a=(Mat_SeqBAIJ*)baij->A->data,*b=(Mat_SeqBAIJ*)baij->B->data; 833a2d1c673SSatish Balay int i,j,rstart,ncols,n,ierr,flg,bs2=baij->bs2; 834a2d1c673SSatish Balay int *row,*col,other_disassembled,r1,r2,r3; 835bbb85fb3SSatish Balay Scalar *val; 836bbb85fb3SSatish Balay InsertMode addv = mat->insertmode; 837bbb85fb3SSatish Balay 838bbb85fb3SSatish Balay PetscFunctionBegin; 839bbb85fb3SSatish Balay if (!baij->donotstash) { 840a2d1c673SSatish Balay while (1) { 8418798bf22SSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 842a2d1c673SSatish Balay if (!flg) break; 843a2d1c673SSatish Balay 844bbb85fb3SSatish Balay for ( i=0; i<n; ) { 845bbb85fb3SSatish Balay /* Now identify the consecutive vals belonging to the same row */ 846bbb85fb3SSatish Balay for ( j=i,rstart=row[j]; j<n; j++ ) { if (row[j] != rstart) break; } 847bbb85fb3SSatish Balay if (j < n) ncols = j-i; 848bbb85fb3SSatish Balay else ncols = n-i; 849bbb85fb3SSatish Balay /* Now assemble all these values with a single function call */ 850bbb85fb3SSatish Balay ierr = MatSetValues_MPIBAIJ(mat,1,row+i,ncols,col+i,val+i,addv);CHKERRQ(ierr); 851bbb85fb3SSatish Balay i = j; 852bbb85fb3SSatish Balay } 853bbb85fb3SSatish Balay } 8548798bf22SSatish Balay ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr); 855a2d1c673SSatish Balay /* Now process the block-stash. Since the values are stashed column-oriented, 856a2d1c673SSatish Balay set the roworiented flag to column oriented, and after MatSetValues() 857a2d1c673SSatish Balay restore the original flags */ 858a2d1c673SSatish Balay r1 = baij->roworiented; 859a2d1c673SSatish Balay r2 = a->roworiented; 860a2d1c673SSatish Balay r3 = b->roworiented; 861a2d1c673SSatish Balay baij->roworiented = 0; 862a2d1c673SSatish Balay a->roworiented = 0; 863a2d1c673SSatish Balay b->roworiented = 0; 864a2d1c673SSatish Balay while (1) { 8658798bf22SSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->bstash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 866a2d1c673SSatish Balay if (!flg) break; 867a2d1c673SSatish Balay 868a2d1c673SSatish Balay for ( i=0; i<n; ) { 869a2d1c673SSatish Balay /* Now identify the consecutive vals belonging to the same row */ 870a2d1c673SSatish Balay for ( j=i,rstart=row[j]; j<n; j++ ) { if (row[j] != rstart) break; } 871a2d1c673SSatish Balay if (j < n) ncols = j-i; 872a2d1c673SSatish Balay else ncols = n-i; 873a2d1c673SSatish Balay ierr = MatSetValuesBlocked_MPIBAIJ(mat,1,row+i,ncols,col+i,val+i*bs2,addv);CHKERRQ(ierr); 874a2d1c673SSatish Balay i = j; 875a2d1c673SSatish Balay } 876a2d1c673SSatish Balay } 8778798bf22SSatish Balay ierr = MatStashScatterEnd_Private(&mat->bstash);CHKERRQ(ierr); 878a2d1c673SSatish Balay baij->roworiented = r1; 879a2d1c673SSatish Balay a->roworiented = r2; 880a2d1c673SSatish Balay b->roworiented = r3; 881bbb85fb3SSatish Balay } 882bbb85fb3SSatish Balay 883bbb85fb3SSatish Balay ierr = MatAssemblyBegin(baij->A,mode);CHKERRQ(ierr); 884bbb85fb3SSatish Balay ierr = MatAssemblyEnd(baij->A,mode);CHKERRQ(ierr); 885bbb85fb3SSatish Balay 886bbb85fb3SSatish Balay /* determine if any processor has disassembled, if so we must 887bbb85fb3SSatish Balay also disassemble ourselfs, in order that we may reassemble. */ 888bbb85fb3SSatish Balay /* 889bbb85fb3SSatish Balay if nonzero structure of submatrix B cannot change then we know that 890bbb85fb3SSatish Balay no processor disassembled thus we can skip this stuff 891bbb85fb3SSatish Balay */ 892bbb85fb3SSatish Balay if (!((Mat_SeqBAIJ*) baij->B->data)->nonew) { 893bbb85fb3SSatish Balay ierr = MPI_Allreduce(&mat->was_assembled,&other_disassembled,1,MPI_INT,MPI_PROD,mat->comm);CHKERRQ(ierr); 894bbb85fb3SSatish Balay if (mat->was_assembled && !other_disassembled) { 895bbb85fb3SSatish Balay ierr = DisAssemble_MPIBAIJ(mat);CHKERRQ(ierr); 896bbb85fb3SSatish Balay } 897bbb85fb3SSatish Balay } 898bbb85fb3SSatish Balay 899bbb85fb3SSatish Balay if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) { 900bbb85fb3SSatish Balay ierr = MatSetUpMultiply_MPIBAIJ(mat);CHKERRQ(ierr); 901bbb85fb3SSatish Balay } 902bbb85fb3SSatish Balay ierr = MatAssemblyBegin(baij->B,mode);CHKERRQ(ierr); 903bbb85fb3SSatish Balay ierr = MatAssemblyEnd(baij->B,mode);CHKERRQ(ierr); 904bbb85fb3SSatish Balay 905aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g) 906bbb85fb3SSatish Balay if (baij->ht && mode== MAT_FINAL_ASSEMBLY) { 907bbb85fb3SSatish Balay PLogInfo(0,"MatAssemblyEnd_MPIBAIJ:Average Hash Table Search in MatSetValues = %5.2f\n", 908bbb85fb3SSatish Balay ((double)baij->ht_total_ct)/baij->ht_insert_ct); 909bbb85fb3SSatish Balay baij->ht_total_ct = 0; 910bbb85fb3SSatish Balay baij->ht_insert_ct = 0; 911bbb85fb3SSatish Balay } 912bbb85fb3SSatish Balay #endif 913bbb85fb3SSatish Balay if (baij->ht_flag && !baij->ht && mode == MAT_FINAL_ASSEMBLY) { 914bbb85fb3SSatish Balay ierr = MatCreateHashTable_MPIBAIJ_Private(mat,baij->ht_fact);CHKERRQ(ierr); 915bbb85fb3SSatish Balay mat->ops->setvalues = MatSetValues_MPIBAIJ_HT; 916bbb85fb3SSatish Balay mat->ops->setvaluesblocked = MatSetValuesBlocked_MPIBAIJ_HT; 917bbb85fb3SSatish Balay } 918bbb85fb3SSatish Balay 919606d414cSSatish Balay if (baij->rowvalues) { 920606d414cSSatish Balay ierr = PetscFree(baij->rowvalues);CHKERRQ(ierr); 921606d414cSSatish Balay baij->rowvalues = 0; 922606d414cSSatish Balay } 923bbb85fb3SSatish Balay PetscFunctionReturn(0); 924bbb85fb3SSatish Balay } 92557b952d6SSatish Balay 926225e174dSSatish Balay /* 9275615d1e5SSatish Balay #undef __FUNC__ 9285615d1e5SSatish Balay #define __FUNC__ "MatView_MPIBAIJ_Binary" 92957b952d6SSatish Balay static int MatView_MPIBAIJ_Binary(Mat mat,Viewer viewer) 93057b952d6SSatish Balay { 93157b952d6SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *) mat->data; 93257b952d6SSatish Balay int ierr; 93357b952d6SSatish Balay 934d64ed03dSBarry Smith PetscFunctionBegin; 93557b952d6SSatish Balay if (baij->size == 1) { 93657b952d6SSatish Balay ierr = MatView(baij->A,viewer);CHKERRQ(ierr); 937a8c6a408SBarry Smith } else SETERRQ(PETSC_ERR_SUP,0,"Only uniprocessor output supported"); 9383a40ed3dSBarry Smith PetscFunctionReturn(0); 93957b952d6SSatish Balay } 940225e174dSSatish Balay */ 94157b952d6SSatish Balay 9425615d1e5SSatish Balay #undef __FUNC__ 9437b2a1423SBarry Smith #define __FUNC__ "MatView_MPIBAIJ_ASCIIorDraworSocket" 9447b2a1423SBarry Smith static int MatView_MPIBAIJ_ASCIIorDraworSocket(Mat mat,Viewer viewer) 94557b952d6SSatish Balay { 94657b952d6SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *) mat->data; 94777ed5343SBarry Smith int ierr, format,bs = baij->bs, size = baij->size, rank = baij->rank; 94857b952d6SSatish Balay FILE *fd; 94957b952d6SSatish Balay ViewerType vtype; 95057b952d6SSatish Balay 951d64ed03dSBarry Smith PetscFunctionBegin; 95257b952d6SSatish Balay ierr = ViewerGetType(viewer,&vtype);CHKERRQ(ierr); 9533f1db9ecSBarry Smith if (PetscTypeCompare(vtype,ASCII_VIEWER)) { 954d41123aaSBarry Smith ierr = ViewerGetFormat(viewer,&format);CHKERRQ(ierr); 955639f9d9dSBarry Smith if (format == VIEWER_FORMAT_ASCII_INFO_LONG) { 9564e220ebcSLois Curfman McInnes MatInfo info; 957d132466eSBarry Smith ierr = MPI_Comm_rank(mat->comm,&rank);CHKERRQ(ierr); 95857b952d6SSatish Balay ierr = ViewerASCIIGetPointer(viewer,&fd);CHKERRQ(ierr); 959d41123aaSBarry Smith ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr); 960d132466eSBarry Smith ierr = PetscSequentialPhaseBegin(mat->comm,1);CHKERRQ(ierr); 96157b952d6SSatish Balay fprintf(fd,"[%d] Local rows %d nz %d nz alloced %d bs %d mem %d\n", 9624e220ebcSLois Curfman McInnes rank,baij->m,(int)info.nz_used*bs,(int)info.nz_allocated*bs, 9634e220ebcSLois Curfman McInnes baij->bs,(int)info.memory); 964d132466eSBarry Smith ierr = MatGetInfo(baij->A,MAT_LOCAL,&info);CHKERRQ(ierr); 9654e220ebcSLois Curfman McInnes fprintf(fd,"[%d] on-diagonal part: nz %d \n",rank,(int)info.nz_used*bs); 966d132466eSBarry Smith ierr = MatGetInfo(baij->B,MAT_LOCAL,&info);CHKERRQ(ierr); 9674e220ebcSLois Curfman McInnes fprintf(fd,"[%d] off-diagonal part: nz %d \n",rank,(int)info.nz_used*bs); 96857b952d6SSatish Balay fflush(fd); 969d132466eSBarry Smith ierr = PetscSequentialPhaseEnd(mat->comm,1);CHKERRQ(ierr); 97057b952d6SSatish Balay ierr = VecScatterView(baij->Mvctx,viewer);CHKERRQ(ierr); 9713a40ed3dSBarry Smith PetscFunctionReturn(0); 972d64ed03dSBarry Smith } else if (format == VIEWER_FORMAT_ASCII_INFO) { 973d132466eSBarry Smith ierr = PetscPrintf(mat->comm," block size is %d\n",bs);CHKERRQ(ierr); 9743a40ed3dSBarry Smith PetscFunctionReturn(0); 97557b952d6SSatish Balay } 97657b952d6SSatish Balay } 97757b952d6SSatish Balay 9783f1db9ecSBarry Smith if (PetscTypeCompare(vtype,DRAW_VIEWER)) { 97957b952d6SSatish Balay Draw draw; 98057b952d6SSatish Balay PetscTruth isnull; 98177ed5343SBarry Smith ierr = ViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr); 9823a40ed3dSBarry Smith ierr = DrawIsNull(draw,&isnull);CHKERRQ(ierr); if (isnull) PetscFunctionReturn(0); 98357b952d6SSatish Balay } 98457b952d6SSatish Balay 98557b952d6SSatish Balay if (size == 1) { 98657b952d6SSatish Balay ierr = MatView(baij->A,viewer);CHKERRQ(ierr); 987d64ed03dSBarry Smith } else { 98857b952d6SSatish Balay /* assemble the entire matrix onto first processor. */ 98957b952d6SSatish Balay Mat A; 99057b952d6SSatish Balay Mat_SeqBAIJ *Aloc; 99140011551SBarry Smith int M = baij->M, N = baij->N,*ai,*aj,col,i,j,k,*rvals; 99257b952d6SSatish Balay int mbs = baij->mbs; 99357b952d6SSatish Balay Scalar *a; 99457b952d6SSatish Balay 99557b952d6SSatish Balay if (!rank) { 99655843e3eSBarry Smith ierr = MatCreateMPIBAIJ(mat->comm,baij->bs,M,N,M,N,0,PETSC_NULL,0,PETSC_NULL,&A);CHKERRQ(ierr); 997d64ed03dSBarry Smith } else { 99855843e3eSBarry Smith ierr = MatCreateMPIBAIJ(mat->comm,baij->bs,0,0,M,N,0,PETSC_NULL,0,PETSC_NULL,&A);CHKERRQ(ierr); 99957b952d6SSatish Balay } 100057b952d6SSatish Balay PLogObjectParent(mat,A); 100157b952d6SSatish Balay 100257b952d6SSatish Balay /* copy over the A part */ 100357b952d6SSatish Balay Aloc = (Mat_SeqBAIJ*) baij->A->data; 100457b952d6SSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 100557b952d6SSatish Balay rvals = (int *) PetscMalloc(bs*sizeof(int));CHKPTRQ(rvals); 100657b952d6SSatish Balay 100757b952d6SSatish Balay for ( i=0; i<mbs; i++ ) { 100857b952d6SSatish Balay rvals[0] = bs*(baij->rstart + i); 100957b952d6SSatish Balay for ( j=1; j<bs; j++ ) { rvals[j] = rvals[j-1] + 1; } 101057b952d6SSatish Balay for ( j=ai[i]; j<ai[i+1]; j++ ) { 101157b952d6SSatish Balay col = (baij->cstart+aj[j])*bs; 101257b952d6SSatish Balay for (k=0; k<bs; k++ ) { 1013cee3aa6bSSatish Balay ierr = MatSetValues(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 1014cee3aa6bSSatish Balay col++; a += bs; 101557b952d6SSatish Balay } 101657b952d6SSatish Balay } 101757b952d6SSatish Balay } 101857b952d6SSatish Balay /* copy over the B part */ 101957b952d6SSatish Balay Aloc = (Mat_SeqBAIJ*) baij->B->data; 102057b952d6SSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 102157b952d6SSatish Balay for ( i=0; i<mbs; i++ ) { 102257b952d6SSatish Balay rvals[0] = bs*(baij->rstart + i); 102357b952d6SSatish Balay for ( j=1; j<bs; j++ ) { rvals[j] = rvals[j-1] + 1; } 102457b952d6SSatish Balay for ( j=ai[i]; j<ai[i+1]; j++ ) { 102557b952d6SSatish Balay col = baij->garray[aj[j]]*bs; 102657b952d6SSatish Balay for (k=0; k<bs; k++ ) { 1027cee3aa6bSSatish Balay ierr = MatSetValues(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 1028cee3aa6bSSatish Balay col++; a += bs; 102957b952d6SSatish Balay } 103057b952d6SSatish Balay } 103157b952d6SSatish Balay } 1032606d414cSSatish Balay ierr = PetscFree(rvals);CHKERRQ(ierr); 10336d4a8577SBarry Smith ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 10346d4a8577SBarry Smith ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 103555843e3eSBarry Smith /* 103655843e3eSBarry Smith Everyone has to call to draw the matrix since the graphics waits are 103755843e3eSBarry Smith synchronized across all processors that share the Draw object 103855843e3eSBarry Smith */ 10393f1db9ecSBarry Smith if (!rank || PetscTypeCompare(vtype,DRAW_VIEWER)) { 104057b952d6SSatish Balay ierr = MatView(((Mat_MPIBAIJ*)(A->data))->A,viewer);CHKERRQ(ierr); 104157b952d6SSatish Balay } 104257b952d6SSatish Balay ierr = MatDestroy(A);CHKERRQ(ierr); 104357b952d6SSatish Balay } 10443a40ed3dSBarry Smith PetscFunctionReturn(0); 104557b952d6SSatish Balay } 104657b952d6SSatish Balay 104757b952d6SSatish Balay 104857b952d6SSatish Balay 10495615d1e5SSatish Balay #undef __FUNC__ 10505615d1e5SSatish Balay #define __FUNC__ "MatView_MPIBAIJ" 1051e1311b90SBarry Smith int MatView_MPIBAIJ(Mat mat,Viewer viewer) 105257b952d6SSatish Balay { 105357b952d6SSatish Balay int ierr; 105457b952d6SSatish Balay ViewerType vtype; 105557b952d6SSatish Balay 1056d64ed03dSBarry Smith PetscFunctionBegin; 105757b952d6SSatish Balay ierr = ViewerGetType(viewer,&vtype);CHKERRQ(ierr); 10583f1db9ecSBarry Smith if (PetscTypeCompare(vtype,ASCII_VIEWER) || PetscTypeCompare(vtype,DRAW_VIEWER) || 1059a84b093aSSatish Balay PetscTypeCompare(vtype,SOCKET_VIEWER)|| PetscTypeCompare(vtype,BINARY_VIEWER)) { 10607b2a1423SBarry Smith ierr = MatView_MPIBAIJ_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr); 1061a84b093aSSatish Balay /* 10623f1db9ecSBarry Smith } else if (PetscTypeCompare(vtype,BINARY_VIEWER)) { 10633a40ed3dSBarry Smith ierr = MatView_MPIBAIJ_Binary(mat,viewer);CHKERRQ(ierr); 1064a84b093aSSatish Balay */ 10655cd90555SBarry Smith } else { 10665cd90555SBarry Smith SETERRQ(1,1,"Viewer type not supported by PETSc object"); 106757b952d6SSatish Balay } 10683a40ed3dSBarry Smith PetscFunctionReturn(0); 106957b952d6SSatish Balay } 107057b952d6SSatish Balay 10715615d1e5SSatish Balay #undef __FUNC__ 10725615d1e5SSatish Balay #define __FUNC__ "MatDestroy_MPIBAIJ" 1073e1311b90SBarry Smith int MatDestroy_MPIBAIJ(Mat mat) 107479bdfe76SSatish Balay { 107579bdfe76SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *) mat->data; 107679bdfe76SSatish Balay int ierr; 107779bdfe76SSatish Balay 1078d64ed03dSBarry Smith PetscFunctionBegin; 107998dd23e9SBarry Smith 108098dd23e9SBarry Smith if (mat->mapping) { 108198dd23e9SBarry Smith ierr = ISLocalToGlobalMappingDestroy(mat->mapping);CHKERRQ(ierr); 108298dd23e9SBarry Smith } 108398dd23e9SBarry Smith if (mat->bmapping) { 108498dd23e9SBarry Smith ierr = ISLocalToGlobalMappingDestroy(mat->bmapping);CHKERRQ(ierr); 108598dd23e9SBarry Smith } 108661b13de0SBarry Smith if (mat->rmap) { 108761b13de0SBarry Smith ierr = MapDestroy(mat->rmap);CHKERRQ(ierr); 108861b13de0SBarry Smith } 108961b13de0SBarry Smith if (mat->cmap) { 109061b13de0SBarry Smith ierr = MapDestroy(mat->cmap);CHKERRQ(ierr); 109161b13de0SBarry Smith } 1092aa482453SBarry Smith #if defined(PETSC_USE_LOG) 1093e1311b90SBarry Smith PLogObjectState((PetscObject)mat,"Rows=%d, Cols=%d",baij->M,baij->N); 109479bdfe76SSatish Balay #endif 109579bdfe76SSatish Balay 10968798bf22SSatish Balay ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr); 10978798bf22SSatish Balay ierr = MatStashDestroy_Private(&mat->bstash);CHKERRQ(ierr); 10988798bf22SSatish Balay 1099606d414cSSatish Balay ierr = PetscFree(baij->rowners);CHKERRQ(ierr); 110079bdfe76SSatish Balay ierr = MatDestroy(baij->A);CHKERRQ(ierr); 110179bdfe76SSatish Balay ierr = MatDestroy(baij->B);CHKERRQ(ierr); 1102aa482453SBarry Smith #if defined (PETSC_USE_CTABLE) 1103606d414cSSatish Balay if (baij->colmap) {ierr = TableDelete(baij->colmap);CHKERRQ(ierr);} 110448e59246SSatish Balay #else 1105606d414cSSatish Balay if (baij->colmap) {ierr = PetscFree(baij->colmap);CHKERRQ(ierr);} 110648e59246SSatish Balay #endif 1107606d414cSSatish Balay if (baij->garray) {ierr = PetscFree(baij->garray);CHKERRQ(ierr);} 1108606d414cSSatish Balay if (baij->lvec) {ierr = VecDestroy(baij->lvec);CHKERRQ(ierr);} 1109606d414cSSatish Balay if (baij->Mvctx) {ierr = VecScatterDestroy(baij->Mvctx);CHKERRQ(ierr);} 1110606d414cSSatish Balay if (baij->rowvalues) {ierr = PetscFree(baij->rowvalues);CHKERRQ(ierr);} 1111606d414cSSatish Balay if (baij->barray) {ierr = PetscFree(baij->barray);CHKERRQ(ierr);} 1112606d414cSSatish Balay if (baij->hd) {ierr = PetscFree(baij->hd);CHKERRQ(ierr);} 1113606d414cSSatish Balay ierr = PetscFree(baij);CHKERRQ(ierr); 111479bdfe76SSatish Balay PLogObjectDestroy(mat); 111579bdfe76SSatish Balay PetscHeaderDestroy(mat); 11163a40ed3dSBarry Smith PetscFunctionReturn(0); 111779bdfe76SSatish Balay } 111879bdfe76SSatish Balay 11195615d1e5SSatish Balay #undef __FUNC__ 11205615d1e5SSatish Balay #define __FUNC__ "MatMult_MPIBAIJ" 1121ec1ea8d8SLois Curfman McInnes int MatMult_MPIBAIJ(Mat A,Vec xx,Vec yy) 1122cee3aa6bSSatish Balay { 1123cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ *) A->data; 112447b4a8eaSLois Curfman McInnes int ierr, nt; 1125cee3aa6bSSatish Balay 1126d64ed03dSBarry Smith PetscFunctionBegin; 1127e1311b90SBarry Smith ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr); 112847b4a8eaSLois Curfman McInnes if (nt != a->n) { 1129a8c6a408SBarry Smith SETERRQ(PETSC_ERR_ARG_SIZ,0,"Incompatible partition of A and xx"); 113047b4a8eaSLois Curfman McInnes } 1131e1311b90SBarry Smith ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr); 113247b4a8eaSLois Curfman McInnes if (nt != a->m) { 1133a8c6a408SBarry Smith SETERRQ(PETSC_ERR_ARG_SIZ,0,"Incompatible parition of A and yy"); 113447b4a8eaSLois Curfman McInnes } 113543a90d84SBarry Smith ierr = VecScatterBegin(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr); 1136f830108cSBarry Smith ierr = (*a->A->ops->mult)(a->A,xx,yy);CHKERRQ(ierr); 113743a90d84SBarry Smith ierr = VecScatterEnd(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr); 1138f830108cSBarry Smith ierr = (*a->B->ops->multadd)(a->B,a->lvec,yy,yy);CHKERRQ(ierr); 113943a90d84SBarry Smith ierr = VecScatterPostRecvs(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr); 11403a40ed3dSBarry Smith PetscFunctionReturn(0); 1141cee3aa6bSSatish Balay } 1142cee3aa6bSSatish Balay 11435615d1e5SSatish Balay #undef __FUNC__ 11445615d1e5SSatish Balay #define __FUNC__ "MatMultAdd_MPIBAIJ" 1145ec1ea8d8SLois Curfman McInnes int MatMultAdd_MPIBAIJ(Mat A,Vec xx,Vec yy,Vec zz) 1146cee3aa6bSSatish Balay { 1147cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ *) A->data; 1148cee3aa6bSSatish Balay int ierr; 1149d64ed03dSBarry Smith 1150d64ed03dSBarry Smith PetscFunctionBegin; 115143a90d84SBarry Smith ierr = VecScatterBegin(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr); 1152f830108cSBarry Smith ierr = (*a->A->ops->multadd)(a->A,xx,yy,zz);CHKERRQ(ierr); 115343a90d84SBarry Smith ierr = VecScatterEnd(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr); 1154f830108cSBarry Smith ierr = (*a->B->ops->multadd)(a->B,a->lvec,zz,zz);CHKERRQ(ierr); 11553a40ed3dSBarry Smith PetscFunctionReturn(0); 1156cee3aa6bSSatish Balay } 1157cee3aa6bSSatish Balay 11585615d1e5SSatish Balay #undef __FUNC__ 11595615d1e5SSatish Balay #define __FUNC__ "MatMultTrans_MPIBAIJ" 1160ec1ea8d8SLois Curfman McInnes int MatMultTrans_MPIBAIJ(Mat A,Vec xx,Vec yy) 1161cee3aa6bSSatish Balay { 1162cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ *) A->data; 1163cee3aa6bSSatish Balay int ierr; 1164cee3aa6bSSatish Balay 1165d64ed03dSBarry Smith PetscFunctionBegin; 1166cee3aa6bSSatish Balay /* do nondiagonal part */ 1167f830108cSBarry Smith ierr = (*a->B->ops->multtrans)(a->B,xx,a->lvec);CHKERRQ(ierr); 1168cee3aa6bSSatish Balay /* send it on its way */ 1169537820f0SBarry Smith ierr = VecScatterBegin(a->lvec,yy,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr); 1170cee3aa6bSSatish Balay /* do local part */ 1171f830108cSBarry Smith ierr = (*a->A->ops->multtrans)(a->A,xx,yy);CHKERRQ(ierr); 1172cee3aa6bSSatish Balay /* receive remote parts: note this assumes the values are not actually */ 1173cee3aa6bSSatish Balay /* inserted in yy until the next line, which is true for my implementation*/ 1174cee3aa6bSSatish Balay /* but is not perhaps always true. */ 1175639f9d9dSBarry Smith ierr = VecScatterEnd(a->lvec,yy,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr); 11763a40ed3dSBarry Smith PetscFunctionReturn(0); 1177cee3aa6bSSatish Balay } 1178cee3aa6bSSatish Balay 11795615d1e5SSatish Balay #undef __FUNC__ 11805615d1e5SSatish Balay #define __FUNC__ "MatMultTransAdd_MPIBAIJ" 1181ec1ea8d8SLois Curfman McInnes int MatMultTransAdd_MPIBAIJ(Mat A,Vec xx,Vec yy,Vec zz) 1182cee3aa6bSSatish Balay { 1183cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ *) A->data; 1184cee3aa6bSSatish Balay int ierr; 1185cee3aa6bSSatish Balay 1186d64ed03dSBarry Smith PetscFunctionBegin; 1187cee3aa6bSSatish Balay /* do nondiagonal part */ 1188f830108cSBarry Smith ierr = (*a->B->ops->multtrans)(a->B,xx,a->lvec);CHKERRQ(ierr); 1189cee3aa6bSSatish Balay /* send it on its way */ 1190537820f0SBarry Smith ierr = VecScatterBegin(a->lvec,zz,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr); 1191cee3aa6bSSatish Balay /* do local part */ 1192f830108cSBarry Smith ierr = (*a->A->ops->multtransadd)(a->A,xx,yy,zz);CHKERRQ(ierr); 1193cee3aa6bSSatish Balay /* receive remote parts: note this assumes the values are not actually */ 1194cee3aa6bSSatish Balay /* inserted in yy until the next line, which is true for my implementation*/ 1195cee3aa6bSSatish Balay /* but is not perhaps always true. */ 1196537820f0SBarry Smith ierr = VecScatterEnd(a->lvec,zz,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr); 11973a40ed3dSBarry Smith PetscFunctionReturn(0); 1198cee3aa6bSSatish Balay } 1199cee3aa6bSSatish Balay 1200cee3aa6bSSatish Balay /* 1201cee3aa6bSSatish Balay This only works correctly for square matrices where the subblock A->A is the 1202cee3aa6bSSatish Balay diagonal block 1203cee3aa6bSSatish Balay */ 12045615d1e5SSatish Balay #undef __FUNC__ 12055615d1e5SSatish Balay #define __FUNC__ "MatGetDiagonal_MPIBAIJ" 1206ec1ea8d8SLois Curfman McInnes int MatGetDiagonal_MPIBAIJ(Mat A,Vec v) 1207cee3aa6bSSatish Balay { 1208cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ *) A->data; 12093a40ed3dSBarry Smith int ierr; 1210d64ed03dSBarry Smith 1211d64ed03dSBarry Smith PetscFunctionBegin; 1212a8c6a408SBarry Smith if (a->M != a->N) SETERRQ(PETSC_ERR_SUP,0,"Supports only square matrix where A->A is diag block"); 12133a40ed3dSBarry Smith ierr = MatGetDiagonal(a->A,v);CHKERRQ(ierr); 12143a40ed3dSBarry Smith PetscFunctionReturn(0); 1215cee3aa6bSSatish Balay } 1216cee3aa6bSSatish Balay 12175615d1e5SSatish Balay #undef __FUNC__ 12185615d1e5SSatish Balay #define __FUNC__ "MatScale_MPIBAIJ" 1219ec1ea8d8SLois Curfman McInnes int MatScale_MPIBAIJ(Scalar *aa,Mat A) 1220cee3aa6bSSatish Balay { 1221cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ *) A->data; 1222cee3aa6bSSatish Balay int ierr; 1223d64ed03dSBarry Smith 1224d64ed03dSBarry Smith PetscFunctionBegin; 1225cee3aa6bSSatish Balay ierr = MatScale(aa,a->A);CHKERRQ(ierr); 1226cee3aa6bSSatish Balay ierr = MatScale(aa,a->B);CHKERRQ(ierr); 12273a40ed3dSBarry Smith PetscFunctionReturn(0); 1228cee3aa6bSSatish Balay } 1229026e39d0SSatish Balay 12305615d1e5SSatish Balay #undef __FUNC__ 12315615d1e5SSatish Balay #define __FUNC__ "MatGetSize_MPIBAIJ" 1232ec1ea8d8SLois Curfman McInnes int MatGetSize_MPIBAIJ(Mat matin,int *m,int *n) 123357b952d6SSatish Balay { 123457b952d6SSatish Balay Mat_MPIBAIJ *mat = (Mat_MPIBAIJ *) matin->data; 1235d64ed03dSBarry Smith 1236d64ed03dSBarry Smith PetscFunctionBegin; 1237bd7f49f5SSatish Balay if (m) *m = mat->M; 1238bd7f49f5SSatish Balay if (n) *n = mat->N; 12393a40ed3dSBarry Smith PetscFunctionReturn(0); 124057b952d6SSatish Balay } 124157b952d6SSatish Balay 12425615d1e5SSatish Balay #undef __FUNC__ 12435615d1e5SSatish Balay #define __FUNC__ "MatGetLocalSize_MPIBAIJ" 1244ec1ea8d8SLois Curfman McInnes int MatGetLocalSize_MPIBAIJ(Mat matin,int *m,int *n) 124557b952d6SSatish Balay { 124657b952d6SSatish Balay Mat_MPIBAIJ *mat = (Mat_MPIBAIJ *) matin->data; 1247d64ed03dSBarry Smith 1248d64ed03dSBarry Smith PetscFunctionBegin; 1249f830108cSBarry Smith *m = mat->m; *n = mat->n; 12503a40ed3dSBarry Smith PetscFunctionReturn(0); 125157b952d6SSatish Balay } 125257b952d6SSatish Balay 12535615d1e5SSatish Balay #undef __FUNC__ 12545615d1e5SSatish Balay #define __FUNC__ "MatGetOwnershipRange_MPIBAIJ" 1255ec1ea8d8SLois Curfman McInnes int MatGetOwnershipRange_MPIBAIJ(Mat matin,int *m,int *n) 125657b952d6SSatish Balay { 125757b952d6SSatish Balay Mat_MPIBAIJ *mat = (Mat_MPIBAIJ *) matin->data; 1258d64ed03dSBarry Smith 1259d64ed03dSBarry Smith PetscFunctionBegin; 126057b952d6SSatish Balay *m = mat->rstart*mat->bs; *n = mat->rend*mat->bs; 12613a40ed3dSBarry Smith PetscFunctionReturn(0); 126257b952d6SSatish Balay } 126357b952d6SSatish Balay 12645615d1e5SSatish Balay #undef __FUNC__ 12655615d1e5SSatish Balay #define __FUNC__ "MatGetRow_MPIBAIJ" 1266acdf5bf4SSatish Balay int MatGetRow_MPIBAIJ(Mat matin,int row,int *nz,int **idx,Scalar **v) 1267acdf5bf4SSatish Balay { 1268acdf5bf4SSatish Balay Mat_MPIBAIJ *mat = (Mat_MPIBAIJ *) matin->data; 1269acdf5bf4SSatish Balay Scalar *vworkA, *vworkB, **pvA, **pvB,*v_p; 1270acdf5bf4SSatish Balay int bs = mat->bs, bs2 = mat->bs2, i, ierr, *cworkA, *cworkB, **pcA, **pcB; 1271d9d09a02SSatish Balay int nztot, nzA, nzB, lrow, brstart = mat->rstart*bs, brend = mat->rend*bs; 1272d9d09a02SSatish Balay int *cmap, *idx_p,cstart = mat->cstart; 1273acdf5bf4SSatish Balay 1274d64ed03dSBarry Smith PetscFunctionBegin; 1275a8c6a408SBarry Smith if (mat->getrowactive == PETSC_TRUE) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,0,"Already active"); 1276acdf5bf4SSatish Balay mat->getrowactive = PETSC_TRUE; 1277acdf5bf4SSatish Balay 1278acdf5bf4SSatish Balay if (!mat->rowvalues && (idx || v)) { 1279acdf5bf4SSatish Balay /* 1280acdf5bf4SSatish Balay allocate enough space to hold information from the longest row. 1281acdf5bf4SSatish Balay */ 1282acdf5bf4SSatish Balay Mat_SeqBAIJ *Aa = (Mat_SeqBAIJ *) mat->A->data,*Ba = (Mat_SeqBAIJ *) mat->B->data; 1283bd16c2feSSatish Balay int max = 1,mbs = mat->mbs,tmp; 1284bd16c2feSSatish Balay for ( i=0; i<mbs; i++ ) { 1285acdf5bf4SSatish Balay tmp = Aa->i[i+1] - Aa->i[i] + Ba->i[i+1] - Ba->i[i]; 1286acdf5bf4SSatish Balay if (max < tmp) { max = tmp; } 1287acdf5bf4SSatish Balay } 1288549d3d68SSatish Balay mat->rowvalues = (Scalar *) PetscMalloc( max*bs2*(sizeof(int)+sizeof(Scalar)));CHKPTRQ(mat->rowvalues); 1289acdf5bf4SSatish Balay mat->rowindices = (int *) (mat->rowvalues + max*bs2); 1290acdf5bf4SSatish Balay } 1291acdf5bf4SSatish Balay 1292a8c6a408SBarry Smith if (row < brstart || row >= brend) SETERRQ(PETSC_ERR_SUP,0,"Only local rows") 1293d9d09a02SSatish Balay lrow = row - brstart; 1294acdf5bf4SSatish Balay 1295acdf5bf4SSatish Balay pvA = &vworkA; pcA = &cworkA; pvB = &vworkB; pcB = &cworkB; 1296acdf5bf4SSatish Balay if (!v) {pvA = 0; pvB = 0;} 1297acdf5bf4SSatish Balay if (!idx) {pcA = 0; if (!v) pcB = 0;} 1298f830108cSBarry Smith ierr = (*mat->A->ops->getrow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr); 1299f830108cSBarry Smith ierr = (*mat->B->ops->getrow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr); 1300acdf5bf4SSatish Balay nztot = nzA + nzB; 1301acdf5bf4SSatish Balay 1302acdf5bf4SSatish Balay cmap = mat->garray; 1303acdf5bf4SSatish Balay if (v || idx) { 1304acdf5bf4SSatish Balay if (nztot) { 1305acdf5bf4SSatish Balay /* Sort by increasing column numbers, assuming A and B already sorted */ 1306acdf5bf4SSatish Balay int imark = -1; 1307acdf5bf4SSatish Balay if (v) { 1308acdf5bf4SSatish Balay *v = v_p = mat->rowvalues; 1309acdf5bf4SSatish Balay for ( i=0; i<nzB; i++ ) { 1310d9d09a02SSatish Balay if (cmap[cworkB[i]/bs] < cstart) v_p[i] = vworkB[i]; 1311acdf5bf4SSatish Balay else break; 1312acdf5bf4SSatish Balay } 1313acdf5bf4SSatish Balay imark = i; 1314acdf5bf4SSatish Balay for ( i=0; i<nzA; i++ ) v_p[imark+i] = vworkA[i]; 1315acdf5bf4SSatish Balay for ( i=imark; i<nzB; i++ ) v_p[nzA+i] = vworkB[i]; 1316acdf5bf4SSatish Balay } 1317acdf5bf4SSatish Balay if (idx) { 1318acdf5bf4SSatish Balay *idx = idx_p = mat->rowindices; 1319acdf5bf4SSatish Balay if (imark > -1) { 1320acdf5bf4SSatish Balay for ( i=0; i<imark; i++ ) { 1321bd16c2feSSatish Balay idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs; 1322acdf5bf4SSatish Balay } 1323acdf5bf4SSatish Balay } else { 1324acdf5bf4SSatish Balay for ( i=0; i<nzB; i++ ) { 1325d9d09a02SSatish Balay if (cmap[cworkB[i]/bs] < cstart) 1326d9d09a02SSatish Balay idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ; 1327acdf5bf4SSatish Balay else break; 1328acdf5bf4SSatish Balay } 1329acdf5bf4SSatish Balay imark = i; 1330acdf5bf4SSatish Balay } 1331d9d09a02SSatish Balay for ( i=0; i<nzA; i++ ) idx_p[imark+i] = cstart*bs + cworkA[i]; 1332d9d09a02SSatish Balay for ( i=imark; i<nzB; i++ ) idx_p[nzA+i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ; 1333acdf5bf4SSatish Balay } 1334d64ed03dSBarry Smith } else { 1335d212a18eSSatish Balay if (idx) *idx = 0; 1336d212a18eSSatish Balay if (v) *v = 0; 1337d212a18eSSatish Balay } 1338acdf5bf4SSatish Balay } 1339acdf5bf4SSatish Balay *nz = nztot; 1340f830108cSBarry Smith ierr = (*mat->A->ops->restorerow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr); 1341f830108cSBarry Smith ierr = (*mat->B->ops->restorerow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr); 13423a40ed3dSBarry Smith PetscFunctionReturn(0); 1343acdf5bf4SSatish Balay } 1344acdf5bf4SSatish Balay 13455615d1e5SSatish Balay #undef __FUNC__ 13465615d1e5SSatish Balay #define __FUNC__ "MatRestoreRow_MPIBAIJ" 1347acdf5bf4SSatish Balay int MatRestoreRow_MPIBAIJ(Mat mat,int row,int *nz,int **idx,Scalar **v) 1348acdf5bf4SSatish Balay { 1349acdf5bf4SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *) mat->data; 1350d64ed03dSBarry Smith 1351d64ed03dSBarry Smith PetscFunctionBegin; 1352acdf5bf4SSatish Balay if (baij->getrowactive == PETSC_FALSE) { 1353a8c6a408SBarry Smith SETERRQ(PETSC_ERR_ARG_WRONGSTATE,0,"MatGetRow not called"); 1354acdf5bf4SSatish Balay } 1355acdf5bf4SSatish Balay baij->getrowactive = PETSC_FALSE; 13563a40ed3dSBarry Smith PetscFunctionReturn(0); 1357acdf5bf4SSatish Balay } 1358acdf5bf4SSatish Balay 13595615d1e5SSatish Balay #undef __FUNC__ 13605615d1e5SSatish Balay #define __FUNC__ "MatGetBlockSize_MPIBAIJ" 1361ec1ea8d8SLois Curfman McInnes int MatGetBlockSize_MPIBAIJ(Mat mat,int *bs) 13625a838052SSatish Balay { 13635a838052SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *) mat->data; 1364d64ed03dSBarry Smith 1365d64ed03dSBarry Smith PetscFunctionBegin; 13665a838052SSatish Balay *bs = baij->bs; 13673a40ed3dSBarry Smith PetscFunctionReturn(0); 13685a838052SSatish Balay } 13695a838052SSatish Balay 13705615d1e5SSatish Balay #undef __FUNC__ 13715615d1e5SSatish Balay #define __FUNC__ "MatZeroEntries_MPIBAIJ" 1372ec1ea8d8SLois Curfman McInnes int MatZeroEntries_MPIBAIJ(Mat A) 137358667388SSatish Balay { 137458667388SSatish Balay Mat_MPIBAIJ *l = (Mat_MPIBAIJ *) A->data; 137558667388SSatish Balay int ierr; 1376d64ed03dSBarry Smith 1377d64ed03dSBarry Smith PetscFunctionBegin; 137858667388SSatish Balay ierr = MatZeroEntries(l->A);CHKERRQ(ierr); 137958667388SSatish Balay ierr = MatZeroEntries(l->B);CHKERRQ(ierr); 13803a40ed3dSBarry Smith PetscFunctionReturn(0); 138158667388SSatish Balay } 13820ac07820SSatish Balay 13835615d1e5SSatish Balay #undef __FUNC__ 13845615d1e5SSatish Balay #define __FUNC__ "MatGetInfo_MPIBAIJ" 1385ec1ea8d8SLois Curfman McInnes int MatGetInfo_MPIBAIJ(Mat matin,MatInfoType flag,MatInfo *info) 13860ac07820SSatish Balay { 13874e220ebcSLois Curfman McInnes Mat_MPIBAIJ *a = (Mat_MPIBAIJ *) matin->data; 13884e220ebcSLois Curfman McInnes Mat A = a->A, B = a->B; 13897d57db60SLois Curfman McInnes int ierr; 13907d57db60SLois Curfman McInnes double isend[5], irecv[5]; 13910ac07820SSatish Balay 1392d64ed03dSBarry Smith PetscFunctionBegin; 13934e220ebcSLois Curfman McInnes info->block_size = (double)a->bs; 13944e220ebcSLois Curfman McInnes ierr = MatGetInfo(A,MAT_LOCAL,info);CHKERRQ(ierr); 13950e4b21beSBarry Smith isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded; 1396de87f314SBarry Smith isend[3] = info->memory; isend[4] = info->mallocs; 13974e220ebcSLois Curfman McInnes ierr = MatGetInfo(B,MAT_LOCAL,info);CHKERRQ(ierr); 13980e4b21beSBarry Smith isend[0] += info->nz_used; isend[1] += info->nz_allocated; isend[2] += info->nz_unneeded; 1399de87f314SBarry Smith isend[3] += info->memory; isend[4] += info->mallocs; 14000ac07820SSatish Balay if (flag == MAT_LOCAL) { 14014e220ebcSLois Curfman McInnes info->nz_used = isend[0]; 14024e220ebcSLois Curfman McInnes info->nz_allocated = isend[1]; 14034e220ebcSLois Curfman McInnes info->nz_unneeded = isend[2]; 14044e220ebcSLois Curfman McInnes info->memory = isend[3]; 14054e220ebcSLois Curfman McInnes info->mallocs = isend[4]; 14060ac07820SSatish Balay } else if (flag == MAT_GLOBAL_MAX) { 1407f7cdd7c9SBarry Smith ierr = MPI_Allreduce(isend,irecv,5,MPI_DOUBLE,MPI_MAX,matin->comm);CHKERRQ(ierr); 14084e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 14094e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 14104e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 14114e220ebcSLois Curfman McInnes info->memory = irecv[3]; 14124e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 14130ac07820SSatish Balay } else if (flag == MAT_GLOBAL_SUM) { 1414f7cdd7c9SBarry Smith ierr = MPI_Allreduce(isend,irecv,5,MPI_DOUBLE,MPI_SUM,matin->comm);CHKERRQ(ierr); 14154e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 14164e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 14174e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 14184e220ebcSLois Curfman McInnes info->memory = irecv[3]; 14194e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 1420d41123aaSBarry Smith } else { 1421d41123aaSBarry Smith SETERRQ1(1,1,"Unknown MatInfoType argument %d",flag); 14220ac07820SSatish Balay } 14235a5d4f66SBarry Smith info->rows_global = (double)a->M; 14245a5d4f66SBarry Smith info->columns_global = (double)a->N; 14255a5d4f66SBarry Smith info->rows_local = (double)a->m; 14265a5d4f66SBarry Smith info->columns_local = (double)a->N; 14274e220ebcSLois Curfman McInnes info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */ 14284e220ebcSLois Curfman McInnes info->fill_ratio_needed = 0; 14294e220ebcSLois Curfman McInnes info->factor_mallocs = 0; 14303a40ed3dSBarry Smith PetscFunctionReturn(0); 14310ac07820SSatish Balay } 14320ac07820SSatish Balay 14335615d1e5SSatish Balay #undef __FUNC__ 14345615d1e5SSatish Balay #define __FUNC__ "MatSetOption_MPIBAIJ" 1435ec1ea8d8SLois Curfman McInnes int MatSetOption_MPIBAIJ(Mat A,MatOption op) 143658667388SSatish Balay { 143758667388SSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ *) A->data; 143898305bb5SBarry Smith int ierr; 143958667388SSatish Balay 1440d64ed03dSBarry Smith PetscFunctionBegin; 144158667388SSatish Balay if (op == MAT_NO_NEW_NONZERO_LOCATIONS || 144258667388SSatish Balay op == MAT_YES_NEW_NONZERO_LOCATIONS || 14436da5968aSLois Curfman McInnes op == MAT_COLUMNS_UNSORTED || 1444c2653b3dSLois Curfman McInnes op == MAT_COLUMNS_SORTED || 14454787f768SSatish Balay op == MAT_NEW_NONZERO_ALLOCATION_ERR || 14464787f768SSatish Balay op == MAT_NEW_NONZERO_LOCATION_ERR) { 144798305bb5SBarry Smith ierr = MatSetOption(a->A,op);CHKERRQ(ierr); 144898305bb5SBarry Smith ierr = MatSetOption(a->B,op);CHKERRQ(ierr); 1449b1fbbac0SLois Curfman McInnes } else if (op == MAT_ROW_ORIENTED) { 1450aeafbbfcSLois Curfman McInnes a->roworiented = 1; 145198305bb5SBarry Smith ierr = MatSetOption(a->A,op);CHKERRQ(ierr); 145298305bb5SBarry Smith ierr = MatSetOption(a->B,op);CHKERRQ(ierr); 1453b1fbbac0SLois Curfman McInnes } else if (op == MAT_ROWS_SORTED || 14546da5968aSLois Curfman McInnes op == MAT_ROWS_UNSORTED || 145558667388SSatish Balay op == MAT_SYMMETRIC || 145658667388SSatish Balay op == MAT_STRUCTURALLY_SYMMETRIC || 1457b51ba29fSSatish Balay op == MAT_YES_NEW_DIAGONALS || 145898305bb5SBarry Smith op == MAT_USE_HASH_TABLE) { 145958667388SSatish Balay PLogInfo(A,"Info:MatSetOption_MPIBAIJ:Option ignored\n"); 146098305bb5SBarry Smith } else if (op == MAT_COLUMN_ORIENTED) { 146158667388SSatish Balay a->roworiented = 0; 146298305bb5SBarry Smith ierr = MatSetOption(a->A,op);CHKERRQ(ierr); 146398305bb5SBarry Smith ierr = MatSetOption(a->B,op);CHKERRQ(ierr); 14642b362799SSatish Balay } else if (op == MAT_IGNORE_OFF_PROC_ENTRIES) { 146590f02eecSBarry Smith a->donotstash = 1; 1466d64ed03dSBarry Smith } else if (op == MAT_NO_NEW_DIAGONALS) { 1467d64ed03dSBarry Smith SETERRQ(PETSC_ERR_SUP,0,"MAT_NO_NEW_DIAGONALS"); 1468133cdb44SSatish Balay } else if (op == MAT_USE_HASH_TABLE) { 1469133cdb44SSatish Balay a->ht_flag = 1; 1470d64ed03dSBarry Smith } else { 1471d64ed03dSBarry Smith SETERRQ(PETSC_ERR_SUP,0,"unknown option"); 1472d64ed03dSBarry Smith } 14733a40ed3dSBarry Smith PetscFunctionReturn(0); 147458667388SSatish Balay } 147558667388SSatish Balay 14765615d1e5SSatish Balay #undef __FUNC__ 14775615d1e5SSatish Balay #define __FUNC__ "MatTranspose_MPIBAIJ(" 1478ec1ea8d8SLois Curfman McInnes int MatTranspose_MPIBAIJ(Mat A,Mat *matout) 14790ac07820SSatish Balay { 14800ac07820SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *) A->data; 14810ac07820SSatish Balay Mat_SeqBAIJ *Aloc; 14820ac07820SSatish Balay Mat B; 148340011551SBarry Smith int ierr,M=baij->M,N=baij->N,*ai,*aj,i,*rvals,j,k,col; 14840ac07820SSatish Balay int bs=baij->bs,mbs=baij->mbs; 14850ac07820SSatish Balay Scalar *a; 14860ac07820SSatish Balay 1487d64ed03dSBarry Smith PetscFunctionBegin; 1488a8c6a408SBarry Smith if (matout == PETSC_NULL && M != N) SETERRQ(PETSC_ERR_ARG_SIZ,0,"Square matrix only for in-place"); 148928937c7bSBarry Smith ierr = MatCreateMPIBAIJ(A->comm,baij->bs,baij->n,baij->m,N,M,0,PETSC_NULL,0,PETSC_NULL,&B); 14900ac07820SSatish Balay CHKERRQ(ierr); 14910ac07820SSatish Balay 14920ac07820SSatish Balay /* copy over the A part */ 14930ac07820SSatish Balay Aloc = (Mat_SeqBAIJ*) baij->A->data; 14940ac07820SSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 14950ac07820SSatish Balay rvals = (int *) PetscMalloc(bs*sizeof(int));CHKPTRQ(rvals); 14960ac07820SSatish Balay 14970ac07820SSatish Balay for ( i=0; i<mbs; i++ ) { 14980ac07820SSatish Balay rvals[0] = bs*(baij->rstart + i); 14990ac07820SSatish Balay for ( j=1; j<bs; j++ ) { rvals[j] = rvals[j-1] + 1; } 15000ac07820SSatish Balay for ( j=ai[i]; j<ai[i+1]; j++ ) { 15010ac07820SSatish Balay col = (baij->cstart+aj[j])*bs; 15020ac07820SSatish Balay for (k=0; k<bs; k++ ) { 15030ac07820SSatish Balay ierr = MatSetValues(B,1,&col,bs,rvals,a,INSERT_VALUES);CHKERRQ(ierr); 15040ac07820SSatish Balay col++; a += bs; 15050ac07820SSatish Balay } 15060ac07820SSatish Balay } 15070ac07820SSatish Balay } 15080ac07820SSatish Balay /* copy over the B part */ 15090ac07820SSatish Balay Aloc = (Mat_SeqBAIJ*) baij->B->data; 15100ac07820SSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 15110ac07820SSatish Balay for ( i=0; i<mbs; i++ ) { 15120ac07820SSatish Balay rvals[0] = bs*(baij->rstart + i); 15130ac07820SSatish Balay for ( j=1; j<bs; j++ ) { rvals[j] = rvals[j-1] + 1; } 15140ac07820SSatish Balay for ( j=ai[i]; j<ai[i+1]; j++ ) { 15150ac07820SSatish Balay col = baij->garray[aj[j]]*bs; 15160ac07820SSatish Balay for (k=0; k<bs; k++ ) { 15170ac07820SSatish Balay ierr = MatSetValues(B,1,&col,bs,rvals,a,INSERT_VALUES);CHKERRQ(ierr); 15180ac07820SSatish Balay col++; a += bs; 15190ac07820SSatish Balay } 15200ac07820SSatish Balay } 15210ac07820SSatish Balay } 1522606d414cSSatish Balay ierr = PetscFree(rvals);CHKERRQ(ierr); 15230ac07820SSatish Balay ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 15240ac07820SSatish Balay ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 15250ac07820SSatish Balay 15260ac07820SSatish Balay if (matout != PETSC_NULL) { 15270ac07820SSatish Balay *matout = B; 15280ac07820SSatish Balay } else { 1529f830108cSBarry Smith PetscOps *Abops; 1530cc2dc46cSBarry Smith MatOps Aops; 1531f830108cSBarry Smith 15320ac07820SSatish Balay /* This isn't really an in-place transpose .... but free data structures from baij */ 1533606d414cSSatish Balay ierr = PetscFree(baij->rowners); CHKERRQ(ierr); 15340ac07820SSatish Balay ierr = MatDestroy(baij->A);CHKERRQ(ierr); 15350ac07820SSatish Balay ierr = MatDestroy(baij->B);CHKERRQ(ierr); 1536aa482453SBarry Smith #if defined (PETSC_USE_CTABLE) 1537606d414cSSatish Balay if (baij->colmap) {ierr = TableDelete(baij->colmap);CHKERRQ(ierr);} 1538b1fc9764SSatish Balay #else 1539606d414cSSatish Balay if (baij->colmap) {ierr = PetscFree(baij->colmap);CHKERRQ(ierr);} 1540b1fc9764SSatish Balay #endif 1541606d414cSSatish Balay if (baij->garray) {ierr = PetscFree(baij->garray);CHKERRQ(ierr);} 1542606d414cSSatish Balay if (baij->lvec) {ierr = VecDestroy(baij->lvec);CHKERRQ(ierr);} 1543606d414cSSatish Balay if (baij->Mvctx) {ierr = VecScatterDestroy(baij->Mvctx);CHKERRQ(ierr);} 1544606d414cSSatish Balay ierr = PetscFree(baij);CHKERRQ(ierr); 1545f830108cSBarry Smith 1546f830108cSBarry Smith /* 1547f830108cSBarry Smith This is horrible, horrible code. We need to keep the 1548f830108cSBarry Smith A pointers for the bops and ops but copy everything 1549f830108cSBarry Smith else from C. 1550f830108cSBarry Smith */ 1551f830108cSBarry Smith Abops = A->bops; 1552f830108cSBarry Smith Aops = A->ops; 1553549d3d68SSatish Balay ierr = PetscMemcpy(A,B,sizeof(struct _p_Mat));CHKERRQ(ierr); 1554f830108cSBarry Smith A->bops = Abops; 1555f830108cSBarry Smith A->ops = Aops; 1556f830108cSBarry Smith 15570ac07820SSatish Balay PetscHeaderDestroy(B); 15580ac07820SSatish Balay } 15593a40ed3dSBarry Smith PetscFunctionReturn(0); 15600ac07820SSatish Balay } 15610e95ebc0SSatish Balay 15625615d1e5SSatish Balay #undef __FUNC__ 15635615d1e5SSatish Balay #define __FUNC__ "MatDiagonalScale_MPIBAIJ" 15640e95ebc0SSatish Balay int MatDiagonalScale_MPIBAIJ(Mat A,Vec ll,Vec rr) 15650e95ebc0SSatish Balay { 15660e95ebc0SSatish Balay Mat a = ((Mat_MPIBAIJ *) A->data)->A; 15670e95ebc0SSatish Balay Mat b = ((Mat_MPIBAIJ *) A->data)->B; 15680e95ebc0SSatish Balay int ierr,s1,s2,s3; 15690e95ebc0SSatish Balay 1570d64ed03dSBarry Smith PetscFunctionBegin; 15710e95ebc0SSatish Balay if (ll) { 15720e95ebc0SSatish Balay ierr = VecGetLocalSize(ll,&s1);CHKERRQ(ierr); 15730e95ebc0SSatish Balay ierr = MatGetLocalSize(A,&s2,&s3);CHKERRQ(ierr); 1574a8c6a408SBarry Smith if (s1!=s2) SETERRQ(PETSC_ERR_ARG_SIZ,0,"non-conforming local sizes"); 15750e95ebc0SSatish Balay ierr = MatDiagonalScale(a,ll,0);CHKERRQ(ierr); 15760e95ebc0SSatish Balay ierr = MatDiagonalScale(b,ll,0);CHKERRQ(ierr); 15770e95ebc0SSatish Balay } 1578a8c6a408SBarry Smith if (rr) SETERRQ(PETSC_ERR_SUP,0,"not supported for right vector"); 15793a40ed3dSBarry Smith PetscFunctionReturn(0); 15800e95ebc0SSatish Balay } 15810e95ebc0SSatish Balay 15825615d1e5SSatish Balay #undef __FUNC__ 15835615d1e5SSatish Balay #define __FUNC__ "MatZeroRows_MPIBAIJ" 1584ec1ea8d8SLois Curfman McInnes int MatZeroRows_MPIBAIJ(Mat A,IS is,Scalar *diag) 15850ac07820SSatish Balay { 15860ac07820SSatish Balay Mat_MPIBAIJ *l = (Mat_MPIBAIJ *) A->data; 15870ac07820SSatish Balay int i,ierr,N, *rows,*owners = l->rowners,size = l->size; 1588a07cd24cSSatish Balay int *procs,*nprocs,j,found,idx,nsends,*work,row; 15890ac07820SSatish Balay int nmax,*svalues,*starts,*owner,nrecvs,rank = l->rank; 15900ac07820SSatish Balay int *rvalues,tag = A->tag,count,base,slen,n,*source; 1591a07cd24cSSatish Balay int *lens,imdex,*lrows,*values,bs=l->bs,rstart_bs=l->rstart_bs; 15920ac07820SSatish Balay MPI_Comm comm = A->comm; 15930ac07820SSatish Balay MPI_Request *send_waits,*recv_waits; 15940ac07820SSatish Balay MPI_Status recv_status,*send_status; 15950ac07820SSatish Balay IS istmp; 15960ac07820SSatish Balay 1597d64ed03dSBarry Smith PetscFunctionBegin; 15980ac07820SSatish Balay ierr = ISGetSize(is,&N);CHKERRQ(ierr); 15990ac07820SSatish Balay ierr = ISGetIndices(is,&rows);CHKERRQ(ierr); 16000ac07820SSatish Balay 16010ac07820SSatish Balay /* first count number of contributors to each processor */ 16020ac07820SSatish Balay nprocs = (int *) PetscMalloc( 2*size*sizeof(int) );CHKPTRQ(nprocs); 1603549d3d68SSatish Balay ierr = PetscMemzero(nprocs,2*size*sizeof(int));CHKERRQ(ierr); 1604549d3d68SSatish Balay procs = nprocs + size; 16050ac07820SSatish Balay owner = (int *) PetscMalloc((N+1)*sizeof(int));CHKPTRQ(owner); /* see note*/ 16060ac07820SSatish Balay for ( i=0; i<N; i++ ) { 16070ac07820SSatish Balay idx = rows[i]; 16080ac07820SSatish Balay found = 0; 16090ac07820SSatish Balay for ( j=0; j<size; j++ ) { 16100ac07820SSatish Balay if (idx >= owners[j]*bs && idx < owners[j+1]*bs) { 16110ac07820SSatish Balay nprocs[j]++; procs[j] = 1; owner[i] = j; found = 1; break; 16120ac07820SSatish Balay } 16130ac07820SSatish Balay } 1614a8c6a408SBarry Smith if (!found) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Index out of range"); 16150ac07820SSatish Balay } 16160ac07820SSatish Balay nsends = 0; for ( i=0; i<size; i++ ) { nsends += procs[i];} 16170ac07820SSatish Balay 16180ac07820SSatish Balay /* inform other processors of number of messages and max length*/ 16190ac07820SSatish Balay work = (int *) PetscMalloc( size*sizeof(int) );CHKPTRQ(work); 1620ca161407SBarry Smith ierr = MPI_Allreduce( procs, work,size,MPI_INT,MPI_SUM,comm);CHKERRQ(ierr); 16210ac07820SSatish Balay nrecvs = work[rank]; 1622ca161407SBarry Smith ierr = MPI_Allreduce( nprocs, work,size,MPI_INT,MPI_MAX,comm);CHKERRQ(ierr); 16230ac07820SSatish Balay nmax = work[rank]; 1624606d414cSSatish Balay ierr = PetscFree(work);CHKERRQ(ierr); 16250ac07820SSatish Balay 16260ac07820SSatish Balay /* post receives: */ 1627d64ed03dSBarry Smith rvalues = (int *) PetscMalloc((nrecvs+1)*(nmax+1)*sizeof(int));CHKPTRQ(rvalues); 1628d64ed03dSBarry Smith recv_waits = (MPI_Request *) PetscMalloc((nrecvs+1)*sizeof(MPI_Request));CHKPTRQ(recv_waits); 16290ac07820SSatish Balay for ( i=0; i<nrecvs; i++ ) { 1630ca161407SBarry Smith ierr = MPI_Irecv(rvalues+nmax*i,nmax,MPI_INT,MPI_ANY_SOURCE,tag,comm,recv_waits+i);CHKERRQ(ierr); 16310ac07820SSatish Balay } 16320ac07820SSatish Balay 16330ac07820SSatish Balay /* do sends: 16340ac07820SSatish Balay 1) starts[i] gives the starting index in svalues for stuff going to 16350ac07820SSatish Balay the ith processor 16360ac07820SSatish Balay */ 16370ac07820SSatish Balay svalues = (int *) PetscMalloc( (N+1)*sizeof(int) );CHKPTRQ(svalues); 1638ca161407SBarry Smith send_waits = (MPI_Request *) PetscMalloc( (nsends+1)*sizeof(MPI_Request));CHKPTRQ(send_waits); 16390ac07820SSatish Balay starts = (int *) PetscMalloc( (size+1)*sizeof(int) );CHKPTRQ(starts); 16400ac07820SSatish Balay starts[0] = 0; 16410ac07820SSatish Balay for ( i=1; i<size; i++ ) { starts[i] = starts[i-1] + nprocs[i-1];} 16420ac07820SSatish Balay for ( i=0; i<N; i++ ) { 16430ac07820SSatish Balay svalues[starts[owner[i]]++] = rows[i]; 16440ac07820SSatish Balay } 16450ac07820SSatish Balay ISRestoreIndices(is,&rows); 16460ac07820SSatish Balay 16470ac07820SSatish Balay starts[0] = 0; 16480ac07820SSatish Balay for ( i=1; i<size+1; i++ ) { starts[i] = starts[i-1] + nprocs[i-1];} 16490ac07820SSatish Balay count = 0; 16500ac07820SSatish Balay for ( i=0; i<size; i++ ) { 16510ac07820SSatish Balay if (procs[i]) { 1652ca161407SBarry Smith ierr = MPI_Isend(svalues+starts[i],nprocs[i],MPI_INT,i,tag,comm,send_waits+count++);CHKERRQ(ierr); 16530ac07820SSatish Balay } 16540ac07820SSatish Balay } 1655606d414cSSatish Balay ierr = PetscFree(starts);CHKERRQ(ierr); 16560ac07820SSatish Balay 16570ac07820SSatish Balay base = owners[rank]*bs; 16580ac07820SSatish Balay 16590ac07820SSatish Balay /* wait on receives */ 16600ac07820SSatish Balay lens = (int *) PetscMalloc( 2*(nrecvs+1)*sizeof(int) );CHKPTRQ(lens); 16610ac07820SSatish Balay source = lens + nrecvs; 16620ac07820SSatish Balay count = nrecvs; slen = 0; 16630ac07820SSatish Balay while (count) { 1664ca161407SBarry Smith ierr = MPI_Waitany(nrecvs,recv_waits,&imdex,&recv_status);CHKERRQ(ierr); 16650ac07820SSatish Balay /* unpack receives into our local space */ 1666ca161407SBarry Smith ierr = MPI_Get_count(&recv_status,MPI_INT,&n);CHKERRQ(ierr); 16670ac07820SSatish Balay source[imdex] = recv_status.MPI_SOURCE; 16680ac07820SSatish Balay lens[imdex] = n; 16690ac07820SSatish Balay slen += n; 16700ac07820SSatish Balay count--; 16710ac07820SSatish Balay } 1672606d414cSSatish Balay ierr = PetscFree(recv_waits); CHKERRQ(ierr); 16730ac07820SSatish Balay 16740ac07820SSatish Balay /* move the data into the send scatter */ 16750ac07820SSatish Balay lrows = (int *) PetscMalloc( (slen+1)*sizeof(int) );CHKPTRQ(lrows); 16760ac07820SSatish Balay count = 0; 16770ac07820SSatish Balay for ( i=0; i<nrecvs; i++ ) { 16780ac07820SSatish Balay values = rvalues + i*nmax; 16790ac07820SSatish Balay for ( j=0; j<lens[i]; j++ ) { 16800ac07820SSatish Balay lrows[count++] = values[j] - base; 16810ac07820SSatish Balay } 16820ac07820SSatish Balay } 1683606d414cSSatish Balay ierr = PetscFree(rvalues);CHKERRQ(ierr); 1684606d414cSSatish Balay ierr = PetscFree(lens);CHKERRQ(ierr); 1685606d414cSSatish Balay ierr = PetscFree(owner);CHKERRQ(ierr); 1686606d414cSSatish Balay ierr = PetscFree(nprocs);CHKERRQ(ierr); 16870ac07820SSatish Balay 16880ac07820SSatish Balay /* actually zap the local rows */ 1689029af93fSBarry Smith ierr = ISCreateGeneral(PETSC_COMM_SELF,slen,lrows,&istmp);CHKERRQ(ierr); 16900ac07820SSatish Balay PLogObjectParent(A,istmp); 1691a07cd24cSSatish Balay 169272dacd9aSBarry Smith /* 169372dacd9aSBarry Smith Zero the required rows. If the "diagonal block" of the matrix 169472dacd9aSBarry Smith is square and the user wishes to set the diagonal we use seperate 169572dacd9aSBarry Smith code so that MatSetValues() is not called for each diagonal allocating 169672dacd9aSBarry Smith new memory, thus calling lots of mallocs and slowing things down. 169772dacd9aSBarry Smith 169872dacd9aSBarry Smith Contributed by: Mathew Knepley 169972dacd9aSBarry Smith */ 17009c957beeSSatish Balay /* must zero l->B before l->A because the (diag) case below may put values into l->B*/ 17010ac07820SSatish Balay ierr = MatZeroRows(l->B,istmp,0);CHKERRQ(ierr); 17029c957beeSSatish Balay if (diag && (l->A->M == l->A->N)) { 17039c957beeSSatish Balay ierr = MatZeroRows(l->A,istmp,diag);CHKERRQ(ierr); 17049c957beeSSatish Balay } else if (diag) { 17059c957beeSSatish Balay ierr = MatZeroRows(l->A,istmp,0);CHKERRQ(ierr); 1706fa46199cSSatish Balay if (((Mat_SeqBAIJ*)l->A->data)->nonew) { 1707fa46199cSSatish Balay SETERRQ(PETSC_ERR_SUP,0,"MatZeroRows() on rectangular matrices cannot be used with the Mat options \n\ 1708fa46199cSSatish Balay MAT_NO_NEW_NONZERO_LOCATIONS,MAT_NEW_NONZERO_LOCATION_ERR,MAT_NEW_NONZERO_ALLOCATION_ERR"); 17096525c446SSatish Balay } 1710a07cd24cSSatish Balay for ( i = 0; i < slen; i++ ) { 1711a07cd24cSSatish Balay row = lrows[i] + rstart_bs; 1712a07cd24cSSatish Balay ierr = MatSetValues(A,1,&row,1,&row,diag,INSERT_VALUES);CHKERRQ(ierr); 1713a07cd24cSSatish Balay } 1714a07cd24cSSatish Balay ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 1715a07cd24cSSatish Balay ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 17169c957beeSSatish Balay } else { 17179c957beeSSatish Balay ierr = MatZeroRows(l->A,istmp,0);CHKERRQ(ierr); 1718a07cd24cSSatish Balay } 17199c957beeSSatish Balay 17209c957beeSSatish Balay ierr = ISDestroy(istmp);CHKERRQ(ierr); 1721606d414cSSatish Balay ierr = PetscFree(lrows);CHKERRQ(ierr); 1722a07cd24cSSatish Balay 17230ac07820SSatish Balay /* wait on sends */ 17240ac07820SSatish Balay if (nsends) { 1725d64ed03dSBarry Smith send_status = (MPI_Status *) PetscMalloc(nsends*sizeof(MPI_Status));CHKPTRQ(send_status); 1726ca161407SBarry Smith ierr = MPI_Waitall(nsends,send_waits,send_status);CHKERRQ(ierr); 1727606d414cSSatish Balay ierr = PetscFree(send_status);CHKERRQ(ierr); 17280ac07820SSatish Balay } 1729606d414cSSatish Balay ierr = PetscFree(send_waits);CHKERRQ(ierr); 1730606d414cSSatish Balay ierr = PetscFree(svalues);CHKERRQ(ierr); 17310ac07820SSatish Balay 17323a40ed3dSBarry Smith PetscFunctionReturn(0); 17330ac07820SSatish Balay } 173472dacd9aSBarry Smith 17355615d1e5SSatish Balay #undef __FUNC__ 17365615d1e5SSatish Balay #define __FUNC__ "MatPrintHelp_MPIBAIJ" 1737ec1ea8d8SLois Curfman McInnes int MatPrintHelp_MPIBAIJ(Mat A) 1738ba4ca20aSSatish Balay { 1739ba4ca20aSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*) A->data; 174025fdafccSSatish Balay MPI_Comm comm = A->comm; 1741133cdb44SSatish Balay static int called = 0; 17423a40ed3dSBarry Smith int ierr; 1743ba4ca20aSSatish Balay 1744d64ed03dSBarry Smith PetscFunctionBegin; 17453a40ed3dSBarry Smith if (!a->rank) { 17463a40ed3dSBarry Smith ierr = MatPrintHelp_SeqBAIJ(a->A);CHKERRQ(ierr); 174725fdafccSSatish Balay } 174825fdafccSSatish Balay if (called) {PetscFunctionReturn(0);} else called = 1; 1749d132466eSBarry Smith ierr = (*PetscHelpPrintf)(comm," Options for MATMPIBAIJ matrix format (the defaults):\n");CHKERRQ(ierr); 1750d132466eSBarry Smith ierr = (*PetscHelpPrintf)(comm," -mat_use_hash_table <factor>: Use hashtable for efficient matrix assembly\n");CHKERRQ(ierr); 17513a40ed3dSBarry Smith PetscFunctionReturn(0); 1752ba4ca20aSSatish Balay } 17530ac07820SSatish Balay 17545615d1e5SSatish Balay #undef __FUNC__ 17555615d1e5SSatish Balay #define __FUNC__ "MatSetUnfactored_MPIBAIJ" 1756ec1ea8d8SLois Curfman McInnes int MatSetUnfactored_MPIBAIJ(Mat A) 1757bb5a7306SBarry Smith { 1758bb5a7306SBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ*) A->data; 1759bb5a7306SBarry Smith int ierr; 1760d64ed03dSBarry Smith 1761d64ed03dSBarry Smith PetscFunctionBegin; 1762bb5a7306SBarry Smith ierr = MatSetUnfactored(a->A);CHKERRQ(ierr); 17633a40ed3dSBarry Smith PetscFunctionReturn(0); 1764bb5a7306SBarry Smith } 1765bb5a7306SBarry Smith 17662e8a6d31SBarry Smith static int MatDuplicate_MPIBAIJ(Mat,MatDuplicateOption,Mat *); 17670ac07820SSatish Balay 17687fc3c18eSBarry Smith #undef __FUNC__ 17697fc3c18eSBarry Smith #define __FUNC__ "MatEqual_MPIBAIJ" 17707fc3c18eSBarry Smith int MatEqual_MPIBAIJ(Mat A, Mat B, PetscTruth *flag) 17717fc3c18eSBarry Smith { 17727fc3c18eSBarry Smith Mat_MPIBAIJ *matB = (Mat_MPIBAIJ *) B->data,*matA = (Mat_MPIBAIJ *) A->data; 17737fc3c18eSBarry Smith Mat a, b, c, d; 17747fc3c18eSBarry Smith PetscTruth flg; 17757fc3c18eSBarry Smith int ierr; 17767fc3c18eSBarry Smith 17777fc3c18eSBarry Smith PetscFunctionBegin; 17787fc3c18eSBarry Smith if (B->type != MATMPIBAIJ) SETERRQ(PETSC_ERR_ARG_INCOMP,0,"Matrices must be same type"); 17797fc3c18eSBarry Smith a = matA->A; b = matA->B; 17807fc3c18eSBarry Smith c = matB->A; d = matB->B; 17817fc3c18eSBarry Smith 17827fc3c18eSBarry Smith ierr = MatEqual(a, c, &flg);CHKERRQ(ierr); 17837fc3c18eSBarry Smith if (flg == PETSC_TRUE) { 17847fc3c18eSBarry Smith ierr = MatEqual(b, d, &flg);CHKERRQ(ierr); 17857fc3c18eSBarry Smith } 17867fc3c18eSBarry Smith ierr = MPI_Allreduce(&flg, flag, 1, MPI_INT, MPI_LAND, A->comm);CHKERRQ(ierr); 17877fc3c18eSBarry Smith PetscFunctionReturn(0); 17887fc3c18eSBarry Smith } 17897fc3c18eSBarry Smith 179079bdfe76SSatish Balay /* -------------------------------------------------------------------*/ 1791cc2dc46cSBarry Smith static struct _MatOps MatOps_Values = { 1792cc2dc46cSBarry Smith MatSetValues_MPIBAIJ, 1793cc2dc46cSBarry Smith MatGetRow_MPIBAIJ, 1794cc2dc46cSBarry Smith MatRestoreRow_MPIBAIJ, 1795cc2dc46cSBarry Smith MatMult_MPIBAIJ, 1796cc2dc46cSBarry Smith MatMultAdd_MPIBAIJ, 1797cc2dc46cSBarry Smith MatMultTrans_MPIBAIJ, 1798cc2dc46cSBarry Smith MatMultTransAdd_MPIBAIJ, 1799cc2dc46cSBarry Smith 0, 1800cc2dc46cSBarry Smith 0, 1801cc2dc46cSBarry Smith 0, 1802cc2dc46cSBarry Smith 0, 1803cc2dc46cSBarry Smith 0, 1804cc2dc46cSBarry Smith 0, 1805cc2dc46cSBarry Smith 0, 1806cc2dc46cSBarry Smith MatTranspose_MPIBAIJ, 1807cc2dc46cSBarry Smith MatGetInfo_MPIBAIJ, 18087fc3c18eSBarry Smith MatEqual_MPIBAIJ, 1809cc2dc46cSBarry Smith MatGetDiagonal_MPIBAIJ, 1810cc2dc46cSBarry Smith MatDiagonalScale_MPIBAIJ, 1811cc2dc46cSBarry Smith MatNorm_MPIBAIJ, 1812cc2dc46cSBarry Smith MatAssemblyBegin_MPIBAIJ, 1813cc2dc46cSBarry Smith MatAssemblyEnd_MPIBAIJ, 1814cc2dc46cSBarry Smith 0, 1815cc2dc46cSBarry Smith MatSetOption_MPIBAIJ, 1816cc2dc46cSBarry Smith MatZeroEntries_MPIBAIJ, 1817cc2dc46cSBarry Smith MatZeroRows_MPIBAIJ, 1818cc2dc46cSBarry Smith 0, 1819cc2dc46cSBarry Smith 0, 1820cc2dc46cSBarry Smith 0, 1821cc2dc46cSBarry Smith 0, 1822cc2dc46cSBarry Smith MatGetSize_MPIBAIJ, 1823cc2dc46cSBarry Smith MatGetLocalSize_MPIBAIJ, 1824cc2dc46cSBarry Smith MatGetOwnershipRange_MPIBAIJ, 1825cc2dc46cSBarry Smith 0, 1826cc2dc46cSBarry Smith 0, 1827cc2dc46cSBarry Smith 0, 1828cc2dc46cSBarry Smith 0, 18292e8a6d31SBarry Smith MatDuplicate_MPIBAIJ, 1830cc2dc46cSBarry Smith 0, 1831cc2dc46cSBarry Smith 0, 1832cc2dc46cSBarry Smith 0, 1833cc2dc46cSBarry Smith 0, 1834cc2dc46cSBarry Smith 0, 1835cc2dc46cSBarry Smith MatGetSubMatrices_MPIBAIJ, 1836cc2dc46cSBarry Smith MatIncreaseOverlap_MPIBAIJ, 1837cc2dc46cSBarry Smith MatGetValues_MPIBAIJ, 1838cc2dc46cSBarry Smith 0, 1839cc2dc46cSBarry Smith MatPrintHelp_MPIBAIJ, 1840cc2dc46cSBarry Smith MatScale_MPIBAIJ, 1841cc2dc46cSBarry Smith 0, 1842cc2dc46cSBarry Smith 0, 1843cc2dc46cSBarry Smith 0, 1844cc2dc46cSBarry Smith MatGetBlockSize_MPIBAIJ, 1845cc2dc46cSBarry Smith 0, 1846cc2dc46cSBarry Smith 0, 1847cc2dc46cSBarry Smith 0, 1848cc2dc46cSBarry Smith 0, 1849cc2dc46cSBarry Smith 0, 1850cc2dc46cSBarry Smith 0, 1851cc2dc46cSBarry Smith MatSetUnfactored_MPIBAIJ, 1852cc2dc46cSBarry Smith 0, 1853cc2dc46cSBarry Smith MatSetValuesBlocked_MPIBAIJ, 1854cc2dc46cSBarry Smith 0, 1855cc2dc46cSBarry Smith 0, 1856cc2dc46cSBarry Smith 0, 1857cc2dc46cSBarry Smith MatGetMaps_Petsc}; 185879bdfe76SSatish Balay 18595ef9f2a5SBarry Smith 1860e18c124aSSatish Balay EXTERN_C_BEGIN 18615ef9f2a5SBarry Smith #undef __FUNC__ 18625ef9f2a5SBarry Smith #define __FUNC__ "MatGetDiagonalBlock_MPIBAIJ" 18635ef9f2a5SBarry Smith int MatGetDiagonalBlock_MPIBAIJ(Mat A,PetscTruth *iscopy,MatReuse reuse,Mat *a) 18645ef9f2a5SBarry Smith { 18655ef9f2a5SBarry Smith PetscFunctionBegin; 18665ef9f2a5SBarry Smith *a = ((Mat_MPIBAIJ *)A->data)->A; 18675ef9f2a5SBarry Smith *iscopy = PETSC_FALSE; 18685ef9f2a5SBarry Smith PetscFunctionReturn(0); 18695ef9f2a5SBarry Smith } 1870e18c124aSSatish Balay EXTERN_C_END 187179bdfe76SSatish Balay 18725615d1e5SSatish Balay #undef __FUNC__ 18735615d1e5SSatish Balay #define __FUNC__ "MatCreateMPIBAIJ" 187479bdfe76SSatish Balay /*@C 187579bdfe76SSatish Balay MatCreateMPIBAIJ - Creates a sparse parallel matrix in block AIJ format 187679bdfe76SSatish Balay (block compressed row). For good matrix assembly performance 187779bdfe76SSatish Balay the user should preallocate the matrix storage by setting the parameters 187879bdfe76SSatish Balay d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 187979bdfe76SSatish Balay performance can be increased by more than a factor of 50. 188079bdfe76SSatish Balay 1881db81eaa0SLois Curfman McInnes Collective on MPI_Comm 1882db81eaa0SLois Curfman McInnes 188379bdfe76SSatish Balay Input Parameters: 1884db81eaa0SLois Curfman McInnes + comm - MPI communicator 188579bdfe76SSatish Balay . bs - size of blockk 188679bdfe76SSatish Balay . m - number of local rows (or PETSC_DECIDE to have calculated if M is given) 188792e8d321SLois Curfman McInnes This value should be the same as the local size used in creating the 188892e8d321SLois Curfman McInnes y vector for the matrix-vector product y = Ax. 188992e8d321SLois Curfman McInnes . n - number of local columns (or PETSC_DECIDE to have calculated if N is given) 189092e8d321SLois Curfman McInnes This value should be the same as the local size used in creating the 189192e8d321SLois Curfman McInnes x vector for the matrix-vector product y = Ax. 1892be79a94dSBarry Smith . M - number of global rows (or PETSC_DETERMINE to have calculated if m is given) 1893be79a94dSBarry Smith . N - number of global columns (or PETSC_DETERMINE to have calculated if n is given) 189479bdfe76SSatish Balay . d_nz - number of block nonzeros per block row in diagonal portion of local 189579bdfe76SSatish Balay submatrix (same for all local rows) 18967fc3c18eSBarry Smith . d_nnz - array containing the number of block nonzeros in the various block rows 189792e8d321SLois Curfman McInnes of the in diagonal portion of the local (possibly different for each block 1898db81eaa0SLois Curfman McInnes row) or PETSC_NULL. You must leave room for the diagonal entry even if it is zero. 189992e8d321SLois Curfman McInnes . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 190079bdfe76SSatish Balay submatrix (same for all local rows). 19017fc3c18eSBarry Smith - o_nnz - array containing the number of nonzeros in the various block rows of the 190292e8d321SLois Curfman McInnes off-diagonal portion of the local submatrix (possibly different for 190392e8d321SLois Curfman McInnes each block row) or PETSC_NULL. 190479bdfe76SSatish Balay 190579bdfe76SSatish Balay Output Parameter: 190679bdfe76SSatish Balay . A - the matrix 190779bdfe76SSatish Balay 1908db81eaa0SLois Curfman McInnes Options Database Keys: 1909db81eaa0SLois Curfman McInnes . -mat_no_unroll - uses code that does not unroll the loops in the 1910db81eaa0SLois Curfman McInnes block calculations (much slower) 1911db81eaa0SLois Curfman McInnes . -mat_block_size - size of the blocks to use 1912494eafd4SBarry Smith . -mat_mpi - use the parallel matrix data structures even on one processor 1913494eafd4SBarry Smith (defaults to using SeqBAIJ format on one processor) 19143ffaccefSLois Curfman McInnes 1915b259b22eSLois Curfman McInnes Notes: 191679bdfe76SSatish Balay The user MUST specify either the local or global matrix dimensions 191779bdfe76SSatish Balay (possibly both). 191879bdfe76SSatish Balay 1919be79a94dSBarry Smith If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one processor 1920be79a94dSBarry Smith than it must be used on all processors that share the object for that argument. 1921be79a94dSBarry Smith 192279bdfe76SSatish Balay Storage Information: 192379bdfe76SSatish Balay For a square global matrix we define each processor's diagonal portion 192479bdfe76SSatish Balay to be its local rows and the corresponding columns (a square submatrix); 192579bdfe76SSatish Balay each processor's off-diagonal portion encompasses the remainder of the 192679bdfe76SSatish Balay local matrix (a rectangular submatrix). 192779bdfe76SSatish Balay 192879bdfe76SSatish Balay The user can specify preallocated storage for the diagonal part of 192979bdfe76SSatish Balay the local submatrix with either d_nz or d_nnz (not both). Set 193079bdfe76SSatish Balay d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic 193179bdfe76SSatish Balay memory allocation. Likewise, specify preallocated storage for the 193279bdfe76SSatish Balay off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 193379bdfe76SSatish Balay 193479bdfe76SSatish Balay Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 193579bdfe76SSatish Balay the figure below we depict these three local rows and all columns (0-11). 193679bdfe76SSatish Balay 1937db81eaa0SLois Curfman McInnes .vb 1938db81eaa0SLois Curfman McInnes 0 1 2 3 4 5 6 7 8 9 10 11 1939db81eaa0SLois Curfman McInnes ------------------- 1940db81eaa0SLois Curfman McInnes row 3 | o o o d d d o o o o o o 1941db81eaa0SLois Curfman McInnes row 4 | o o o d d d o o o o o o 1942db81eaa0SLois Curfman McInnes row 5 | o o o d d d o o o o o o 1943db81eaa0SLois Curfman McInnes ------------------- 1944db81eaa0SLois Curfman McInnes .ve 194579bdfe76SSatish Balay 194679bdfe76SSatish Balay Thus, any entries in the d locations are stored in the d (diagonal) 194779bdfe76SSatish Balay submatrix, and any entries in the o locations are stored in the 194879bdfe76SSatish Balay o (off-diagonal) submatrix. Note that the d and the o submatrices are 194957b952d6SSatish Balay stored simply in the MATSEQBAIJ format for compressed row storage. 195079bdfe76SSatish Balay 1951d64ed03dSBarry Smith Now d_nz should indicate the number of block nonzeros per row in the d matrix, 1952d64ed03dSBarry Smith and o_nz should indicate the number of block nonzeros per row in the o matrix. 195379bdfe76SSatish Balay In general, for PDE problems in which most nonzeros are near the diagonal, 195492e8d321SLois Curfman McInnes one expects d_nz >> o_nz. For large problems you MUST preallocate memory 195592e8d321SLois Curfman McInnes or you will get TERRIBLE performance; see the users' manual chapter on 19566da5968aSLois Curfman McInnes matrices. 195779bdfe76SSatish Balay 1958027ccd11SLois Curfman McInnes Level: intermediate 1959027ccd11SLois Curfman McInnes 196092e8d321SLois Curfman McInnes .keywords: matrix, block, aij, compressed row, sparse, parallel 196179bdfe76SSatish Balay 1962db81eaa0SLois Curfman McInnes .seealso: MatCreate(), MatCreateSeqBAIJ(), MatSetValues(), MatCreateMPIAIJ() 196379bdfe76SSatish Balay @*/ 196479bdfe76SSatish Balay int MatCreateMPIBAIJ(MPI_Comm comm,int bs,int m,int n,int M,int N, 196579bdfe76SSatish Balay int d_nz,int *d_nnz,int o_nz,int *o_nnz,Mat *A) 196679bdfe76SSatish Balay { 196779bdfe76SSatish Balay Mat B; 196879bdfe76SSatish Balay Mat_MPIBAIJ *b; 1969133cdb44SSatish Balay int ierr, i,sum[2],work[2],mbs,nbs,Mbs=PETSC_DECIDE,Nbs=PETSC_DECIDE,size,flg; 1970a2ab621fSBarry Smith int flag1 = 0,flag2 = 0; 197179bdfe76SSatish Balay 1972d64ed03dSBarry Smith PetscFunctionBegin; 1973962fb4a0SBarry Smith ierr = OptionsGetInt(PETSC_NULL,"-mat_block_size",&bs,PETSC_NULL);CHKERRQ(ierr); 1974962fb4a0SBarry Smith 1975a8c6a408SBarry Smith if (bs < 1) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Invalid block size specified, must be positive"); 1976*4fdb0a08SBarry Smith if (d_nz < -1) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,0,"d_nz cannot be less than -1: value %d",d_nz); 1977*4fdb0a08SBarry Smith if (o_nz < -1) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,0,"o_nz cannot be less than -1: value %d",o_nz); 1978*4fdb0a08SBarry Smith if (d_nnz) { 1979*4fdb0a08SBarry Smith for (i=0; i<m; i++) { 1980*4fdb0a08SBarry Smith if (d_nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,0,"d_nnz cannot be less than -1: local row %d value %d",i,d_nnz[i]); 1981*4fdb0a08SBarry Smith } 1982*4fdb0a08SBarry Smith } 1983*4fdb0a08SBarry Smith if (o_nnz) { 1984*4fdb0a08SBarry Smith for (i=0; i<m; i++) { 1985*4fdb0a08SBarry Smith if (o_nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,0,"o_nnz cannot be less than -1: local row %d value %d",i,o_nnz[i]); 1986*4fdb0a08SBarry Smith } 1987*4fdb0a08SBarry Smith } 19883914022bSBarry Smith 1989d132466eSBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 1990494eafd4SBarry Smith ierr = OptionsHasName(PETSC_NULL,"-mat_mpibaij",&flag1);CHKERRQ(ierr); 1991494eafd4SBarry Smith ierr = OptionsHasName(PETSC_NULL,"-mat_mpi",&flag2);CHKERRQ(ierr); 1992494eafd4SBarry Smith if (!flag1 && !flag2 && size == 1) { 19933914022bSBarry Smith if (M == PETSC_DECIDE) M = m; 19943914022bSBarry Smith if (N == PETSC_DECIDE) N = n; 19953914022bSBarry Smith ierr = MatCreateSeqBAIJ(comm,bs,M,N,d_nz,d_nnz,A);CHKERRQ(ierr); 19963a40ed3dSBarry Smith PetscFunctionReturn(0); 19973914022bSBarry Smith } 19983914022bSBarry Smith 199979bdfe76SSatish Balay *A = 0; 20003f1db9ecSBarry Smith PetscHeaderCreate(B,_p_Mat,struct _MatOps,MAT_COOKIE,MATMPIBAIJ,"Mat",comm,MatDestroy,MatView); 200179bdfe76SSatish Balay PLogObjectCreate(B); 200279bdfe76SSatish Balay B->data = (void *) (b = PetscNew(Mat_MPIBAIJ));CHKPTRQ(b); 2003549d3d68SSatish Balay ierr = PetscMemzero(b,sizeof(Mat_MPIBAIJ));CHKERRQ(ierr); 2004549d3d68SSatish Balay ierr = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr); 20054c50302cSBarry Smith 2006e1311b90SBarry Smith B->ops->destroy = MatDestroy_MPIBAIJ; 2007e1311b90SBarry Smith B->ops->view = MatView_MPIBAIJ; 200890f02eecSBarry Smith B->mapping = 0; 200979bdfe76SSatish Balay B->factor = 0; 201079bdfe76SSatish Balay B->assembled = PETSC_FALSE; 201179bdfe76SSatish Balay 2012e0fa3b82SLois Curfman McInnes B->insertmode = NOT_SET_VALUES; 2013d132466eSBarry Smith ierr = MPI_Comm_rank(comm,&b->rank);CHKERRQ(ierr); 2014d132466eSBarry Smith ierr = MPI_Comm_size(comm,&b->size);CHKERRQ(ierr); 201579bdfe76SSatish Balay 2016d64ed03dSBarry Smith if ( m == PETSC_DECIDE && (d_nnz != PETSC_NULL || o_nnz != PETSC_NULL)) { 2017a8c6a408SBarry Smith SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Cannot have PETSC_DECIDE rows but set d_nnz or o_nnz"); 2018d64ed03dSBarry Smith } 2019a8c6a408SBarry Smith if ( M == PETSC_DECIDE && m == PETSC_DECIDE) { 2020a8c6a408SBarry Smith SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"either M or m should be specified"); 2021a8c6a408SBarry Smith } 2022a8c6a408SBarry Smith if ( N == PETSC_DECIDE && n == PETSC_DECIDE) { 2023a8c6a408SBarry Smith SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"either N or n should be specified"); 2024a8c6a408SBarry Smith } 2025cee3aa6bSSatish Balay if ( M != PETSC_DECIDE && m != PETSC_DECIDE) M = PETSC_DECIDE; 2026cee3aa6bSSatish Balay if ( N != PETSC_DECIDE && n != PETSC_DECIDE) N = PETSC_DECIDE; 202779bdfe76SSatish Balay 202879bdfe76SSatish Balay if (M == PETSC_DECIDE || N == PETSC_DECIDE) { 202979bdfe76SSatish Balay work[0] = m; work[1] = n; 203079bdfe76SSatish Balay mbs = m/bs; nbs = n/bs; 2031ca161407SBarry Smith ierr = MPI_Allreduce( work, sum,2,MPI_INT,MPI_SUM,comm );CHKERRQ(ierr); 203279bdfe76SSatish Balay if (M == PETSC_DECIDE) {M = sum[0]; Mbs = M/bs;} 203379bdfe76SSatish Balay if (N == PETSC_DECIDE) {N = sum[1]; Nbs = N/bs;} 203479bdfe76SSatish Balay } 203579bdfe76SSatish Balay if (m == PETSC_DECIDE) { 203679bdfe76SSatish Balay Mbs = M/bs; 2037a8c6a408SBarry Smith if (Mbs*bs != M) SETERRQ(PETSC_ERR_ARG_SIZ,0,"No of global rows must be divisible by blocksize"); 203879bdfe76SSatish Balay mbs = Mbs/b->size + ((Mbs % b->size) > b->rank); 203979bdfe76SSatish Balay m = mbs*bs; 204079bdfe76SSatish Balay } 204179bdfe76SSatish Balay if (n == PETSC_DECIDE) { 204279bdfe76SSatish Balay Nbs = N/bs; 2043a8c6a408SBarry Smith if (Nbs*bs != N) SETERRQ(PETSC_ERR_ARG_SIZ,0,"No of global cols must be divisible by blocksize"); 204479bdfe76SSatish Balay nbs = Nbs/b->size + ((Nbs % b->size) > b->rank); 204579bdfe76SSatish Balay n = nbs*bs; 204679bdfe76SSatish Balay } 2047a8c6a408SBarry Smith if (mbs*bs != m || nbs*bs != n) { 2048a8c6a408SBarry Smith SETERRQ(PETSC_ERR_ARG_SIZ,0,"No of local rows, cols must be divisible by blocksize"); 2049a8c6a408SBarry Smith } 205079bdfe76SSatish Balay 205179bdfe76SSatish Balay b->m = m; B->m = m; 205279bdfe76SSatish Balay b->n = n; B->n = n; 205379bdfe76SSatish Balay b->N = N; B->N = N; 205479bdfe76SSatish Balay b->M = M; B->M = M; 205579bdfe76SSatish Balay b->bs = bs; 205679bdfe76SSatish Balay b->bs2 = bs*bs; 205779bdfe76SSatish Balay b->mbs = mbs; 205879bdfe76SSatish Balay b->nbs = nbs; 205979bdfe76SSatish Balay b->Mbs = Mbs; 206079bdfe76SSatish Balay b->Nbs = Nbs; 206179bdfe76SSatish Balay 2062c7fcc2eaSBarry Smith /* the information in the maps duplicates the information computed below, eventually 2063c7fcc2eaSBarry Smith we should remove the duplicate information that is not contained in the maps */ 2064488ecbafSBarry Smith ierr = MapCreateMPI(comm,m,M,&B->rmap);CHKERRQ(ierr); 2065488ecbafSBarry Smith ierr = MapCreateMPI(comm,n,N,&B->cmap);CHKERRQ(ierr); 2066c7fcc2eaSBarry Smith 206779bdfe76SSatish Balay /* build local table of row and column ownerships */ 2068ff2fd236SBarry Smith b->rowners = (int *) PetscMalloc(3*(b->size+2)*sizeof(int));CHKPTRQ(b->rowners); 2069ff2fd236SBarry Smith PLogObjectMemory(B,3*(b->size+2)*sizeof(int)+sizeof(struct _p_Mat)+sizeof(Mat_MPIBAIJ)); 20700ac07820SSatish Balay b->cowners = b->rowners + b->size + 2; 2071ff2fd236SBarry Smith b->rowners_bs = b->cowners + b->size + 2; 2072ca161407SBarry Smith ierr = MPI_Allgather(&mbs,1,MPI_INT,b->rowners+1,1,MPI_INT,comm);CHKERRQ(ierr); 207379bdfe76SSatish Balay b->rowners[0] = 0; 207479bdfe76SSatish Balay for ( i=2; i<=b->size; i++ ) { 207579bdfe76SSatish Balay b->rowners[i] += b->rowners[i-1]; 207679bdfe76SSatish Balay } 2077ff2fd236SBarry Smith for ( i=0; i<=b->size; i++ ) { 2078ff2fd236SBarry Smith b->rowners_bs[i] = b->rowners[i]*bs; 2079ff2fd236SBarry Smith } 208079bdfe76SSatish Balay b->rstart = b->rowners[b->rank]; 208179bdfe76SSatish Balay b->rend = b->rowners[b->rank+1]; 20824fa0d573SSatish Balay b->rstart_bs = b->rstart * bs; 20834fa0d573SSatish Balay b->rend_bs = b->rend * bs; 20844fa0d573SSatish Balay 2085ca161407SBarry Smith ierr = MPI_Allgather(&nbs,1,MPI_INT,b->cowners+1,1,MPI_INT,comm);CHKERRQ(ierr); 208679bdfe76SSatish Balay b->cowners[0] = 0; 208779bdfe76SSatish Balay for ( i=2; i<=b->size; i++ ) { 208879bdfe76SSatish Balay b->cowners[i] += b->cowners[i-1]; 208979bdfe76SSatish Balay } 209079bdfe76SSatish Balay b->cstart = b->cowners[b->rank]; 209179bdfe76SSatish Balay b->cend = b->cowners[b->rank+1]; 20924fa0d573SSatish Balay b->cstart_bs = b->cstart * bs; 20934fa0d573SSatish Balay b->cend_bs = b->cend * bs; 209479bdfe76SSatish Balay 2095a07cd24cSSatish Balay 209679bdfe76SSatish Balay if (d_nz == PETSC_DEFAULT) d_nz = 5; 2097029af93fSBarry Smith ierr = MatCreateSeqBAIJ(PETSC_COMM_SELF,bs,m,n,d_nz,d_nnz,&b->A);CHKERRQ(ierr); 209879bdfe76SSatish Balay PLogObjectParent(B,b->A); 209979bdfe76SSatish Balay if (o_nz == PETSC_DEFAULT) o_nz = 0; 2100029af93fSBarry Smith ierr = MatCreateSeqBAIJ(PETSC_COMM_SELF,bs,m,N,o_nz,o_nnz,&b->B);CHKERRQ(ierr); 210179bdfe76SSatish Balay PLogObjectParent(B,b->B); 210279bdfe76SSatish Balay 210379bdfe76SSatish Balay /* build cache for off array entries formed */ 21048798bf22SSatish Balay ierr = MatStashCreate_Private(comm,1,&B->stash);CHKERRQ(ierr); 21058798bf22SSatish Balay ierr = MatStashCreate_Private(comm,bs,&B->bstash);CHKERRQ(ierr); 210690f02eecSBarry Smith b->donotstash = 0; 210779bdfe76SSatish Balay b->colmap = 0; 210879bdfe76SSatish Balay b->garray = 0; 210979bdfe76SSatish Balay b->roworiented = 1; 211079bdfe76SSatish Balay 211130793edcSSatish Balay /* stuff used in block assembly */ 211230793edcSSatish Balay b->barray = 0; 211330793edcSSatish Balay 211479bdfe76SSatish Balay /* stuff used for matrix vector multiply */ 211579bdfe76SSatish Balay b->lvec = 0; 211679bdfe76SSatish Balay b->Mvctx = 0; 211779bdfe76SSatish Balay 211879bdfe76SSatish Balay /* stuff for MatGetRow() */ 211979bdfe76SSatish Balay b->rowindices = 0; 212079bdfe76SSatish Balay b->rowvalues = 0; 212179bdfe76SSatish Balay b->getrowactive = PETSC_FALSE; 212279bdfe76SSatish Balay 2123a07cd24cSSatish Balay /* hash table stuff */ 2124a07cd24cSSatish Balay b->ht = 0; 2125187ce0cbSSatish Balay b->hd = 0; 21260bdbc534SSatish Balay b->ht_size = 0; 2127133cdb44SSatish Balay b->ht_flag = 0; 212825fdafccSSatish Balay b->ht_fact = 0; 2129187ce0cbSSatish Balay b->ht_total_ct = 0; 2130187ce0cbSSatish Balay b->ht_insert_ct = 0; 2131a07cd24cSSatish Balay 213279bdfe76SSatish Balay *A = B; 2133133cdb44SSatish Balay ierr = OptionsHasName(PETSC_NULL,"-mat_use_hash_table",&flg);CHKERRQ(ierr); 2134133cdb44SSatish Balay if (flg) { 2135133cdb44SSatish Balay double fact = 1.39; 2136133cdb44SSatish Balay ierr = MatSetOption(B,MAT_USE_HASH_TABLE);CHKERRQ(ierr); 2137133cdb44SSatish Balay ierr = OptionsGetDouble(PETSC_NULL,"-mat_use_hash_table",&fact,&flg);CHKERRQ(ierr); 2138133cdb44SSatish Balay if (fact <= 1.0) fact = 1.39; 2139133cdb44SSatish Balay ierr = MatMPIBAIJSetHashTableFactor(B,fact);CHKERRQ(ierr); 2140133cdb44SSatish Balay PLogInfo(0,"MatCreateMPIBAIJ:Hash table Factor used %5.2f\n",fact); 2141133cdb44SSatish Balay } 21427fc3c18eSBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatStoreValues_C", 21437fc3c18eSBarry Smith "MatStoreValues_MPIBAIJ", 21447fc3c18eSBarry Smith (void*)MatStoreValues_MPIBAIJ);CHKERRQ(ierr); 21457fc3c18eSBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatRetrieveValues_C", 21467fc3c18eSBarry Smith "MatRetrieveValues_MPIBAIJ", 21477fc3c18eSBarry Smith (void*)MatRetrieveValues_MPIBAIJ);CHKERRQ(ierr); 21485ef9f2a5SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatGetDiagonalBlock_C", 21495ef9f2a5SBarry Smith "MatGetDiagonalBlock_MPIBAIJ", 21505ef9f2a5SBarry Smith (void*)MatGetDiagonalBlock_MPIBAIJ);CHKERRQ(ierr); 21513a40ed3dSBarry Smith PetscFunctionReturn(0); 215279bdfe76SSatish Balay } 2153026e39d0SSatish Balay 21545615d1e5SSatish Balay #undef __FUNC__ 21552e8a6d31SBarry Smith #define __FUNC__ "MatDuplicate_MPIBAIJ" 21562e8a6d31SBarry Smith static int MatDuplicate_MPIBAIJ(Mat matin,MatDuplicateOption cpvalues,Mat *newmat) 21570ac07820SSatish Balay { 21580ac07820SSatish Balay Mat mat; 21590ac07820SSatish Balay Mat_MPIBAIJ *a,*oldmat = (Mat_MPIBAIJ *) matin->data; 21600ac07820SSatish Balay int ierr, len=0, flg; 21610ac07820SSatish Balay 2162d64ed03dSBarry Smith PetscFunctionBegin; 21630ac07820SSatish Balay *newmat = 0; 21643f1db9ecSBarry Smith PetscHeaderCreate(mat,_p_Mat,struct _MatOps,MAT_COOKIE,MATMPIBAIJ,"Mat",matin->comm,MatDestroy,MatView); 21650ac07820SSatish Balay PLogObjectCreate(mat); 21660ac07820SSatish Balay mat->data = (void *) (a = PetscNew(Mat_MPIBAIJ));CHKPTRQ(a); 2167549d3d68SSatish Balay ierr = PetscMemcpy(mat->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr); 2168e1311b90SBarry Smith mat->ops->destroy = MatDestroy_MPIBAIJ; 2169e1311b90SBarry Smith mat->ops->view = MatView_MPIBAIJ; 21700ac07820SSatish Balay mat->factor = matin->factor; 21710ac07820SSatish Balay mat->assembled = PETSC_TRUE; 2172aef5e8e0SSatish Balay mat->insertmode = NOT_SET_VALUES; 21730ac07820SSatish Balay 21740ac07820SSatish Balay a->m = mat->m = oldmat->m; 21750ac07820SSatish Balay a->n = mat->n = oldmat->n; 21760ac07820SSatish Balay a->M = mat->M = oldmat->M; 21770ac07820SSatish Balay a->N = mat->N = oldmat->N; 21780ac07820SSatish Balay 21790ac07820SSatish Balay a->bs = oldmat->bs; 21800ac07820SSatish Balay a->bs2 = oldmat->bs2; 21810ac07820SSatish Balay a->mbs = oldmat->mbs; 21820ac07820SSatish Balay a->nbs = oldmat->nbs; 21830ac07820SSatish Balay a->Mbs = oldmat->Mbs; 21840ac07820SSatish Balay a->Nbs = oldmat->Nbs; 21850ac07820SSatish Balay 21860ac07820SSatish Balay a->rstart = oldmat->rstart; 21870ac07820SSatish Balay a->rend = oldmat->rend; 21880ac07820SSatish Balay a->cstart = oldmat->cstart; 21890ac07820SSatish Balay a->cend = oldmat->cend; 21900ac07820SSatish Balay a->size = oldmat->size; 21910ac07820SSatish Balay a->rank = oldmat->rank; 2192aef5e8e0SSatish Balay a->donotstash = oldmat->donotstash; 2193aef5e8e0SSatish Balay a->roworiented = oldmat->roworiented; 2194aef5e8e0SSatish Balay a->rowindices = 0; 21950ac07820SSatish Balay a->rowvalues = 0; 21960ac07820SSatish Balay a->getrowactive = PETSC_FALSE; 219730793edcSSatish Balay a->barray = 0; 21983123a43fSSatish Balay a->rstart_bs = oldmat->rstart_bs; 21993123a43fSSatish Balay a->rend_bs = oldmat->rend_bs; 22003123a43fSSatish Balay a->cstart_bs = oldmat->cstart_bs; 22013123a43fSSatish Balay a->cend_bs = oldmat->cend_bs; 22020ac07820SSatish Balay 2203133cdb44SSatish Balay /* hash table stuff */ 2204133cdb44SSatish Balay a->ht = 0; 2205133cdb44SSatish Balay a->hd = 0; 2206133cdb44SSatish Balay a->ht_size = 0; 2207133cdb44SSatish Balay a->ht_flag = oldmat->ht_flag; 220825fdafccSSatish Balay a->ht_fact = oldmat->ht_fact; 2209133cdb44SSatish Balay a->ht_total_ct = 0; 2210133cdb44SSatish Balay a->ht_insert_ct = 0; 2211133cdb44SSatish Balay 2212133cdb44SSatish Balay 2213ff2fd236SBarry Smith a->rowners = (int *) PetscMalloc(3*(a->size+2)*sizeof(int));CHKPTRQ(a->rowners); 2214ff2fd236SBarry Smith PLogObjectMemory(mat,3*(a->size+2)*sizeof(int)+sizeof(struct _p_Mat)+sizeof(Mat_MPIBAIJ)); 22150ac07820SSatish Balay a->cowners = a->rowners + a->size + 2; 2216ff2fd236SBarry Smith a->rowners_bs = a->cowners + a->size + 2; 2217549d3d68SSatish Balay ierr = PetscMemcpy(a->rowners,oldmat->rowners,3*(a->size+2)*sizeof(int));CHKERRQ(ierr); 22188798bf22SSatish Balay ierr = MatStashCreate_Private(matin->comm,1,&mat->stash);CHKERRQ(ierr); 22198798bf22SSatish Balay ierr = MatStashCreate_Private(matin->comm,oldmat->bs,&mat->bstash);CHKERRQ(ierr); 22200ac07820SSatish Balay if (oldmat->colmap) { 2221aa482453SBarry Smith #if defined (PETSC_USE_CTABLE) 2222fa46199cSSatish Balay ierr = TableCreateCopy(oldmat->colmap,&a->colmap);CHKERRQ(ierr); 222348e59246SSatish Balay #else 22240ac07820SSatish Balay a->colmap = (int *) PetscMalloc((a->Nbs)*sizeof(int));CHKPTRQ(a->colmap); 22250ac07820SSatish Balay PLogObjectMemory(mat,(a->Nbs)*sizeof(int)); 2226549d3d68SSatish Balay ierr = PetscMemcpy(a->colmap,oldmat->colmap,(a->Nbs)*sizeof(int));CHKERRQ(ierr); 222748e59246SSatish Balay #endif 22280ac07820SSatish Balay } else a->colmap = 0; 22290ac07820SSatish Balay if (oldmat->garray && (len = ((Mat_SeqBAIJ *) (oldmat->B->data))->nbs)) { 22300ac07820SSatish Balay a->garray = (int *) PetscMalloc(len*sizeof(int));CHKPTRQ(a->garray); 22310ac07820SSatish Balay PLogObjectMemory(mat,len*sizeof(int)); 2232549d3d68SSatish Balay ierr = PetscMemcpy(a->garray,oldmat->garray,len*sizeof(int));CHKERRQ(ierr); 22330ac07820SSatish Balay } else a->garray = 0; 22340ac07820SSatish Balay 22350ac07820SSatish Balay ierr = VecDuplicate(oldmat->lvec,&a->lvec);CHKERRQ(ierr); 22360ac07820SSatish Balay PLogObjectParent(mat,a->lvec); 22370ac07820SSatish Balay ierr = VecScatterCopy(oldmat->Mvctx,&a->Mvctx);CHKERRQ(ierr); 2238e18c124aSSatish Balay 22390ac07820SSatish Balay PLogObjectParent(mat,a->Mvctx); 22402e8a6d31SBarry Smith ierr = MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr); 22410ac07820SSatish Balay PLogObjectParent(mat,a->A); 22422e8a6d31SBarry Smith ierr = MatDuplicate(oldmat->B,cpvalues,&a->B);CHKERRQ(ierr); 22430ac07820SSatish Balay PLogObjectParent(mat,a->B); 22440ac07820SSatish Balay ierr = OptionsHasName(PETSC_NULL,"-help",&flg);CHKERRQ(ierr); 2245e18c124aSSatish Balay ierr = FListDuplicate(mat->qlist,&matin->qlist);CHKERRQ(ierr); 22460ac07820SSatish Balay if (flg) { 22470ac07820SSatish Balay ierr = MatPrintHelp(mat);CHKERRQ(ierr); 22480ac07820SSatish Balay } 22490ac07820SSatish Balay *newmat = mat; 22503a40ed3dSBarry Smith PetscFunctionReturn(0); 22510ac07820SSatish Balay } 225257b952d6SSatish Balay 225357b952d6SSatish Balay #include "sys.h" 225457b952d6SSatish Balay 22555615d1e5SSatish Balay #undef __FUNC__ 22565615d1e5SSatish Balay #define __FUNC__ "MatLoad_MPIBAIJ" 225757b952d6SSatish Balay int MatLoad_MPIBAIJ(Viewer viewer,MatType type,Mat *newmat) 225857b952d6SSatish Balay { 225957b952d6SSatish Balay Mat A; 226057b952d6SSatish Balay int i, nz, ierr, j,rstart, rend, fd; 226157b952d6SSatish Balay Scalar *vals,*buf; 226257b952d6SSatish Balay MPI_Comm comm = ((PetscObject)viewer)->comm; 226357b952d6SSatish Balay MPI_Status status; 2264cee3aa6bSSatish Balay int header[4],rank,size,*rowlengths = 0,M,N,m,*rowners,*browners,maxnz,*cols; 226557b952d6SSatish Balay int *locrowlens,*sndcounts = 0,*procsnz = 0, jj,*mycols,*ibuf; 226640011551SBarry Smith int flg,tag = ((PetscObject)viewer)->tag,bs=1,Mbs,mbs,extra_rows; 226757b952d6SSatish Balay int *dlens,*odlens,*mask,*masked1,*masked2,rowcount,odcount; 226857b952d6SSatish Balay int dcount,kmax,k,nzcount,tmp; 226957b952d6SSatish Balay 2270d64ed03dSBarry Smith PetscFunctionBegin; 227157b952d6SSatish Balay ierr = OptionsGetInt(PETSC_NULL,"-matload_block_size",&bs,&flg);CHKERRQ(ierr); 227257b952d6SSatish Balay 2273d132466eSBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 2274d132466eSBarry Smith ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 227557b952d6SSatish Balay if (!rank) { 227657b952d6SSatish Balay ierr = ViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr); 2277e5638eb3SBarry Smith ierr = PetscBinaryRead(fd,(char *)header,4,PETSC_INT);CHKERRQ(ierr); 2278a8c6a408SBarry Smith if (header[0] != MAT_COOKIE) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,0,"not matrix object"); 2279d64ed03dSBarry Smith if (header[3] < 0) { 2280a8c6a408SBarry Smith SETERRQ(PETSC_ERR_FILE_UNEXPECTED,1,"Matrix stored in special format, cannot load as MPIBAIJ"); 2281d64ed03dSBarry Smith } 22826c5fab8fSBarry Smith } 2283d64ed03dSBarry Smith 2284ca161407SBarry Smith ierr = MPI_Bcast(header+1,3,MPI_INT,0,comm);CHKERRQ(ierr); 228557b952d6SSatish Balay M = header[1]; N = header[2]; 228657b952d6SSatish Balay 2287a8c6a408SBarry Smith if (M != N) SETERRQ(PETSC_ERR_SUP,0,"Can only do square matrices"); 228857b952d6SSatish Balay 228957b952d6SSatish Balay /* 229057b952d6SSatish Balay This code adds extra rows to make sure the number of rows is 229157b952d6SSatish Balay divisible by the blocksize 229257b952d6SSatish Balay */ 229357b952d6SSatish Balay Mbs = M/bs; 229457b952d6SSatish Balay extra_rows = bs - M + bs*(Mbs); 229557b952d6SSatish Balay if (extra_rows == bs) extra_rows = 0; 229657b952d6SSatish Balay else Mbs++; 229757b952d6SSatish Balay if (extra_rows &&!rank) { 2298b0267e0aSLois Curfman McInnes PLogInfo(0,"MatLoad_MPIBAIJ:Padding loaded matrix to match blocksize\n"); 229957b952d6SSatish Balay } 2300537820f0SBarry Smith 230157b952d6SSatish Balay /* determine ownership of all rows */ 230257b952d6SSatish Balay mbs = Mbs/size + ((Mbs % size) > rank); 230357b952d6SSatish Balay m = mbs * bs; 2304cee3aa6bSSatish Balay rowners = (int *) PetscMalloc(2*(size+2)*sizeof(int));CHKPTRQ(rowners); 2305cee3aa6bSSatish Balay browners = rowners + size + 1; 2306ca161407SBarry Smith ierr = MPI_Allgather(&mbs,1,MPI_INT,rowners+1,1,MPI_INT,comm);CHKERRQ(ierr); 230757b952d6SSatish Balay rowners[0] = 0; 2308cee3aa6bSSatish Balay for ( i=2; i<=size; i++ ) rowners[i] += rowners[i-1]; 2309cee3aa6bSSatish Balay for ( i=0; i<=size; i++ ) browners[i] = rowners[i]*bs; 231057b952d6SSatish Balay rstart = rowners[rank]; 231157b952d6SSatish Balay rend = rowners[rank+1]; 231257b952d6SSatish Balay 231357b952d6SSatish Balay /* distribute row lengths to all processors */ 231457b952d6SSatish Balay locrowlens = (int*) PetscMalloc( (rend-rstart)*bs*sizeof(int) );CHKPTRQ(locrowlens); 231557b952d6SSatish Balay if (!rank) { 231657b952d6SSatish Balay rowlengths = (int*) PetscMalloc( (M+extra_rows)*sizeof(int) );CHKPTRQ(rowlengths); 2317e5638eb3SBarry Smith ierr = PetscBinaryRead(fd,rowlengths,M,PETSC_INT);CHKERRQ(ierr); 231857b952d6SSatish Balay for ( i=0; i<extra_rows; i++ ) rowlengths[M+i] = 1; 231957b952d6SSatish Balay sndcounts = (int*) PetscMalloc( size*sizeof(int) );CHKPTRQ(sndcounts); 2320cee3aa6bSSatish Balay for ( i=0; i<size; i++ ) sndcounts[i] = browners[i+1] - browners[i]; 2321ca161407SBarry Smith ierr = MPI_Scatterv(rowlengths,sndcounts,browners,MPI_INT,locrowlens,(rend-rstart)*bs,MPI_INT,0,comm);CHKERRQ(ierr); 2322606d414cSSatish Balay ierr = PetscFree(sndcounts);CHKERRQ(ierr); 2323d64ed03dSBarry Smith } else { 2324ca161407SBarry Smith ierr = MPI_Scatterv(0,0,0,MPI_INT,locrowlens,(rend-rstart)*bs,MPI_INT, 0,comm);CHKERRQ(ierr); 232557b952d6SSatish Balay } 232657b952d6SSatish Balay 232757b952d6SSatish Balay if (!rank) { 232857b952d6SSatish Balay /* calculate the number of nonzeros on each processor */ 232957b952d6SSatish Balay procsnz = (int*) PetscMalloc( size*sizeof(int) );CHKPTRQ(procsnz); 2330549d3d68SSatish Balay ierr = PetscMemzero(procsnz,size*sizeof(int));CHKERRQ(ierr); 233157b952d6SSatish Balay for ( i=0; i<size; i++ ) { 233257b952d6SSatish Balay for ( j=rowners[i]*bs; j< rowners[i+1]*bs; j++ ) { 233357b952d6SSatish Balay procsnz[i] += rowlengths[j]; 233457b952d6SSatish Balay } 233557b952d6SSatish Balay } 2336606d414cSSatish Balay ierr = PetscFree(rowlengths);CHKERRQ(ierr); 233757b952d6SSatish Balay 233857b952d6SSatish Balay /* determine max buffer needed and allocate it */ 233957b952d6SSatish Balay maxnz = 0; 234057b952d6SSatish Balay for ( i=0; i<size; i++ ) { 234157b952d6SSatish Balay maxnz = PetscMax(maxnz,procsnz[i]); 234257b952d6SSatish Balay } 234357b952d6SSatish Balay cols = (int *) PetscMalloc( maxnz*sizeof(int) );CHKPTRQ(cols); 234457b952d6SSatish Balay 234557b952d6SSatish Balay /* read in my part of the matrix column indices */ 234657b952d6SSatish Balay nz = procsnz[0]; 234757b952d6SSatish Balay ibuf = (int *) PetscMalloc( nz*sizeof(int) );CHKPTRQ(ibuf); 234857b952d6SSatish Balay mycols = ibuf; 2349cee3aa6bSSatish Balay if (size == 1) nz -= extra_rows; 2350e5638eb3SBarry Smith ierr = PetscBinaryRead(fd,mycols,nz,PETSC_INT);CHKERRQ(ierr); 2351cee3aa6bSSatish Balay if (size == 1) for (i=0; i< extra_rows; i++) { mycols[nz+i] = M+i; } 2352cee3aa6bSSatish Balay 235357b952d6SSatish Balay /* read in every ones (except the last) and ship off */ 235457b952d6SSatish Balay for ( i=1; i<size-1; i++ ) { 235557b952d6SSatish Balay nz = procsnz[i]; 2356e5638eb3SBarry Smith ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr); 2357ca161407SBarry Smith ierr = MPI_Send(cols,nz,MPI_INT,i,tag,comm);CHKERRQ(ierr); 235857b952d6SSatish Balay } 235957b952d6SSatish Balay /* read in the stuff for the last proc */ 236057b952d6SSatish Balay if ( size != 1 ) { 236157b952d6SSatish Balay nz = procsnz[size-1] - extra_rows; /* the extra rows are not on the disk */ 2362e5638eb3SBarry Smith ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr); 236357b952d6SSatish Balay for ( i=0; i<extra_rows; i++ ) cols[nz+i] = M+i; 2364ca161407SBarry Smith ierr = MPI_Send(cols,nz+extra_rows,MPI_INT,size-1,tag,comm);CHKERRQ(ierr); 236557b952d6SSatish Balay } 2366606d414cSSatish Balay ierr = PetscFree(cols);CHKERRQ(ierr); 2367d64ed03dSBarry Smith } else { 236857b952d6SSatish Balay /* determine buffer space needed for message */ 236957b952d6SSatish Balay nz = 0; 237057b952d6SSatish Balay for ( i=0; i<m; i++ ) { 237157b952d6SSatish Balay nz += locrowlens[i]; 237257b952d6SSatish Balay } 237357b952d6SSatish Balay ibuf = (int*) PetscMalloc( nz*sizeof(int) );CHKPTRQ(ibuf); 237457b952d6SSatish Balay mycols = ibuf; 237557b952d6SSatish Balay /* receive message of column indices*/ 2376ca161407SBarry Smith ierr = MPI_Recv(mycols,nz,MPI_INT,0,tag,comm,&status);CHKERRQ(ierr); 2377ca161407SBarry Smith ierr = MPI_Get_count(&status,MPI_INT,&maxnz);CHKERRQ(ierr); 2378a8c6a408SBarry Smith if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,0,"something is wrong with file"); 237957b952d6SSatish Balay } 238057b952d6SSatish Balay 238157b952d6SSatish Balay /* loop over local rows, determining number of off diagonal entries */ 2382cee3aa6bSSatish Balay dlens = (int *) PetscMalloc( 2*(rend-rstart+1)*sizeof(int) );CHKPTRQ(dlens); 2383cee3aa6bSSatish Balay odlens = dlens + (rend-rstart); 238457b952d6SSatish Balay mask = (int *) PetscMalloc( 3*Mbs*sizeof(int) );CHKPTRQ(mask); 2385549d3d68SSatish Balay ierr = PetscMemzero(mask,3*Mbs*sizeof(int));CHKERRQ(ierr); 238657b952d6SSatish Balay masked1 = mask + Mbs; 238757b952d6SSatish Balay masked2 = masked1 + Mbs; 238857b952d6SSatish Balay rowcount = 0; nzcount = 0; 238957b952d6SSatish Balay for ( i=0; i<mbs; i++ ) { 239057b952d6SSatish Balay dcount = 0; 239157b952d6SSatish Balay odcount = 0; 239257b952d6SSatish Balay for ( j=0; j<bs; j++ ) { 239357b952d6SSatish Balay kmax = locrowlens[rowcount]; 239457b952d6SSatish Balay for ( k=0; k<kmax; k++ ) { 239557b952d6SSatish Balay tmp = mycols[nzcount++]/bs; 239657b952d6SSatish Balay if (!mask[tmp]) { 239757b952d6SSatish Balay mask[tmp] = 1; 239857b952d6SSatish Balay if (tmp < rstart || tmp >= rend ) masked2[odcount++] = tmp; 239957b952d6SSatish Balay else masked1[dcount++] = tmp; 240057b952d6SSatish Balay } 240157b952d6SSatish Balay } 240257b952d6SSatish Balay rowcount++; 240357b952d6SSatish Balay } 2404cee3aa6bSSatish Balay 240557b952d6SSatish Balay dlens[i] = dcount; 240657b952d6SSatish Balay odlens[i] = odcount; 2407cee3aa6bSSatish Balay 240857b952d6SSatish Balay /* zero out the mask elements we set */ 240957b952d6SSatish Balay for ( j=0; j<dcount; j++ ) mask[masked1[j]] = 0; 241057b952d6SSatish Balay for ( j=0; j<odcount; j++ ) mask[masked2[j]] = 0; 241157b952d6SSatish Balay } 2412cee3aa6bSSatish Balay 241357b952d6SSatish Balay /* create our matrix */ 2414549d3d68SSatish Balay ierr = MatCreateMPIBAIJ(comm,bs,m,PETSC_DECIDE,M+extra_rows,N+extra_rows,0,dlens,0,odlens,newmat);CHKERRQ(ierr); 241557b952d6SSatish Balay A = *newmat; 24166d4a8577SBarry Smith MatSetOption(A,MAT_COLUMNS_SORTED); 241757b952d6SSatish Balay 241857b952d6SSatish Balay if (!rank) { 241957b952d6SSatish Balay buf = (Scalar *) PetscMalloc( maxnz*sizeof(Scalar) );CHKPTRQ(buf); 242057b952d6SSatish Balay /* read in my part of the matrix numerical values */ 242157b952d6SSatish Balay nz = procsnz[0]; 242257b952d6SSatish Balay vals = buf; 2423cee3aa6bSSatish Balay mycols = ibuf; 2424cee3aa6bSSatish Balay if (size == 1) nz -= extra_rows; 2425e5638eb3SBarry Smith ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 2426cee3aa6bSSatish Balay if (size == 1) for (i=0; i< extra_rows; i++) { vals[nz+i] = 1.0; } 2427537820f0SBarry Smith 242857b952d6SSatish Balay /* insert into matrix */ 242957b952d6SSatish Balay jj = rstart*bs; 243057b952d6SSatish Balay for ( i=0; i<m; i++ ) { 243157b952d6SSatish Balay ierr = MatSetValues(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr); 243257b952d6SSatish Balay mycols += locrowlens[i]; 243357b952d6SSatish Balay vals += locrowlens[i]; 243457b952d6SSatish Balay jj++; 243557b952d6SSatish Balay } 243657b952d6SSatish Balay /* read in other processors (except the last one) and ship out */ 243757b952d6SSatish Balay for ( i=1; i<size-1; i++ ) { 243857b952d6SSatish Balay nz = procsnz[i]; 243957b952d6SSatish Balay vals = buf; 2440e5638eb3SBarry Smith ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 2441ca161407SBarry Smith ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,A->tag,comm);CHKERRQ(ierr); 244257b952d6SSatish Balay } 244357b952d6SSatish Balay /* the last proc */ 244457b952d6SSatish Balay if ( size != 1 ){ 244557b952d6SSatish Balay nz = procsnz[i] - extra_rows; 2446cee3aa6bSSatish Balay vals = buf; 2447e5638eb3SBarry Smith ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 244857b952d6SSatish Balay for ( i=0; i<extra_rows; i++ ) vals[nz+i] = 1.0; 2449ca161407SBarry Smith ierr = MPI_Send(vals,nz+extra_rows,MPIU_SCALAR,size-1,A->tag,comm);CHKERRQ(ierr); 245057b952d6SSatish Balay } 2451606d414cSSatish Balay ierr = PetscFree(procsnz);CHKERRQ(ierr); 2452d64ed03dSBarry Smith } else { 245357b952d6SSatish Balay /* receive numeric values */ 245457b952d6SSatish Balay buf = (Scalar*) PetscMalloc( nz*sizeof(Scalar) );CHKPTRQ(buf); 245557b952d6SSatish Balay 245657b952d6SSatish Balay /* receive message of values*/ 245757b952d6SSatish Balay vals = buf; 2458cee3aa6bSSatish Balay mycols = ibuf; 2459ca161407SBarry Smith ierr = MPI_Recv(vals,nz,MPIU_SCALAR,0,A->tag,comm,&status);CHKERRQ(ierr); 2460ca161407SBarry Smith ierr = MPI_Get_count(&status,MPIU_SCALAR,&maxnz);CHKERRQ(ierr); 2461a8c6a408SBarry Smith if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,0,"something is wrong with file"); 246257b952d6SSatish Balay 246357b952d6SSatish Balay /* insert into matrix */ 246457b952d6SSatish Balay jj = rstart*bs; 2465cee3aa6bSSatish Balay for ( i=0; i<m; i++ ) { 246657b952d6SSatish Balay ierr = MatSetValues(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr); 246757b952d6SSatish Balay mycols += locrowlens[i]; 246857b952d6SSatish Balay vals += locrowlens[i]; 246957b952d6SSatish Balay jj++; 247057b952d6SSatish Balay } 247157b952d6SSatish Balay } 2472606d414cSSatish Balay ierr = PetscFree(locrowlens);CHKERRQ(ierr); 2473606d414cSSatish Balay ierr = PetscFree(buf);CHKERRQ(ierr); 2474606d414cSSatish Balay ierr = PetscFree(ibuf);CHKERRQ(ierr); 2475606d414cSSatish Balay ierr = PetscFree(rowners);CHKERRQ(ierr); 2476606d414cSSatish Balay ierr = PetscFree(dlens);CHKERRQ(ierr); 2477606d414cSSatish Balay ierr = PetscFree(mask);CHKERRQ(ierr); 24786d4a8577SBarry Smith ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 24796d4a8577SBarry Smith ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 24803a40ed3dSBarry Smith PetscFunctionReturn(0); 248157b952d6SSatish Balay } 248257b952d6SSatish Balay 248357b952d6SSatish Balay 2484133cdb44SSatish Balay 2485133cdb44SSatish Balay #undef __FUNC__ 2486133cdb44SSatish Balay #define __FUNC__ "MatMPIBAIJSetHashTableFactor" 2487133cdb44SSatish Balay /*@ 2488133cdb44SSatish Balay MatMPIBAIJSetHashTableFactor - Sets the factor required to compute the size of the HashTable. 2489133cdb44SSatish Balay 2490133cdb44SSatish Balay Input Parameters: 2491133cdb44SSatish Balay . mat - the matrix 2492133cdb44SSatish Balay . fact - factor 2493133cdb44SSatish Balay 2494fee21e36SBarry Smith Collective on Mat 2495fee21e36SBarry Smith 24968c890885SBarry Smith Level: advanced 24978c890885SBarry Smith 2498133cdb44SSatish Balay Notes: 2499133cdb44SSatish Balay This can also be set by the command line option: -mat_use_hash_table fact 2500133cdb44SSatish Balay 2501133cdb44SSatish Balay .keywords: matrix, hashtable, factor, HT 2502133cdb44SSatish Balay 2503133cdb44SSatish Balay .seealso: MatSetOption() 2504133cdb44SSatish Balay @*/ 2505133cdb44SSatish Balay int MatMPIBAIJSetHashTableFactor(Mat mat,double fact) 2506133cdb44SSatish Balay { 250725fdafccSSatish Balay Mat_MPIBAIJ *baij; 2508133cdb44SSatish Balay 2509133cdb44SSatish Balay PetscFunctionBegin; 2510133cdb44SSatish Balay PetscValidHeaderSpecific(mat,MAT_COOKIE); 251125fdafccSSatish Balay if (mat->type != MATMPIBAIJ) { 2512133cdb44SSatish Balay SETERRQ(PETSC_ERR_ARG_WRONG,1,"Incorrect matrix type. Use MPIBAIJ only."); 2513133cdb44SSatish Balay } 2514133cdb44SSatish Balay baij = (Mat_MPIBAIJ*) mat->data; 2515133cdb44SSatish Balay baij->ht_fact = fact; 2516133cdb44SSatish Balay PetscFunctionReturn(0); 2517133cdb44SSatish Balay } 2518