xref: /petsc/src/mat/impls/baij/mpi/mpibaij.c (revision 4fdb0a087d30d1582b681484b528d9cd1b204912)
1a5eb4965SSatish Balay #ifdef PETSC_RCS_HEADER
2*4fdb0a08SBarry Smith static char vcid[] = "$Id: mpibaij.c,v 1.175 1999/09/02 14:53:30 bsmith Exp bsmith $";
379bdfe76SSatish Balay #endif
479bdfe76SSatish Balay 
577ed5343SBarry Smith #include "src/mat/impls/baij/mpi/mpibaij.h"   /*I  "mat.h"  I*/
6c16cb8f2SBarry Smith #include "src/vec/vecimpl.h"
779bdfe76SSatish Balay 
857b952d6SSatish Balay extern int MatSetUpMultiply_MPIBAIJ(Mat);
957b952d6SSatish Balay extern int DisAssemble_MPIBAIJ(Mat);
10d212a18eSSatish Balay extern int MatIncreaseOverlap_MPIBAIJ(Mat,int,IS *,int);
117b2a1423SBarry Smith extern int MatGetSubMatrices_MPIBAIJ(Mat,int,IS *,IS *,MatReuse,Mat **);
12946de2abSSatish Balay extern int MatGetValues_SeqBAIJ(Mat,int,int *,int,int *,Scalar *);
13bbb85fb3SSatish Balay extern int MatSetValues_SeqBAIJ(Mat,int,int *,int,int *,Scalar *,InsertMode);
14bbb85fb3SSatish Balay extern int MatSetValuesBlocked_SeqBAIJ(Mat,int,int*,int,int*,Scalar*,InsertMode);
15bbb85fb3SSatish Balay extern int MatGetRow_SeqBAIJ(Mat,int,int*,int**,Scalar**);
16bbb85fb3SSatish Balay extern int MatRestoreRow_SeqBAIJ(Mat,int,int*,int**,Scalar**);
17bbb85fb3SSatish Balay extern int MatPrintHelp_SeqBAIJ(Mat);
183b2fbd54SBarry Smith 
197fc3c18eSBarry Smith EXTERN_C_BEGIN
207fc3c18eSBarry Smith #undef __FUNC__
217fc3c18eSBarry Smith #define __FUNC__ "MatStoreValues_MPIBAIJ"
227fc3c18eSBarry Smith int MatStoreValues_MPIBAIJ(Mat mat)
237fc3c18eSBarry Smith {
247fc3c18eSBarry Smith   Mat_MPIBAIJ *aij = (Mat_MPIBAIJ *)mat->data;
257fc3c18eSBarry Smith   int         ierr;
267fc3c18eSBarry Smith 
277fc3c18eSBarry Smith   PetscFunctionBegin;
287fc3c18eSBarry Smith   ierr = MatStoreValues(aij->A);CHKERRQ(ierr);
297fc3c18eSBarry Smith   ierr = MatStoreValues(aij->B);CHKERRQ(ierr);
307fc3c18eSBarry Smith   PetscFunctionReturn(0);
317fc3c18eSBarry Smith }
327fc3c18eSBarry Smith EXTERN_C_END
337fc3c18eSBarry Smith 
347fc3c18eSBarry Smith EXTERN_C_BEGIN
357fc3c18eSBarry Smith #undef __FUNC__
367fc3c18eSBarry Smith #define __FUNC__ "MatRetrieveValues_MPIBAIJ"
377fc3c18eSBarry Smith int MatRetrieveValues_MPIBAIJ(Mat mat)
387fc3c18eSBarry Smith {
397fc3c18eSBarry Smith   Mat_MPIBAIJ *aij = (Mat_MPIBAIJ *)mat->data;
407fc3c18eSBarry Smith   int         ierr;
417fc3c18eSBarry Smith 
427fc3c18eSBarry Smith   PetscFunctionBegin;
437fc3c18eSBarry Smith   ierr = MatRetrieveValues(aij->A);CHKERRQ(ierr);
447fc3c18eSBarry Smith   ierr = MatRetrieveValues(aij->B);CHKERRQ(ierr);
457fc3c18eSBarry Smith   PetscFunctionReturn(0);
467fc3c18eSBarry Smith }
477fc3c18eSBarry Smith EXTERN_C_END
487fc3c18eSBarry Smith 
49537820f0SBarry Smith /*
50537820f0SBarry Smith      Local utility routine that creates a mapping from the global column
5157b952d6SSatish Balay    number to the local number in the off-diagonal part of the local
5257b952d6SSatish Balay    storage of the matrix.  This is done in a non scable way since the
5357b952d6SSatish Balay    length of colmap equals the global matrix length.
5457b952d6SSatish Balay */
555615d1e5SSatish Balay #undef __FUNC__
565615d1e5SSatish Balay #define __FUNC__ "CreateColmap_MPIBAIJ_Private"
5757b952d6SSatish Balay static int CreateColmap_MPIBAIJ_Private(Mat mat)
5857b952d6SSatish Balay {
5957b952d6SSatish Balay   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *) mat->data;
6057b952d6SSatish Balay   Mat_SeqBAIJ *B = (Mat_SeqBAIJ*) baij->B->data;
61dc2900e9SSatish Balay   int         nbs = B->nbs,i,bs=B->bs,ierr;
6257b952d6SSatish Balay 
63d64ed03dSBarry Smith   PetscFunctionBegin;
64aa482453SBarry Smith #if defined (PETSC_USE_CTABLE)
65fa46199cSSatish Balay   ierr = TableCreate(baij->nbs/5,&baij->colmap);CHKERRQ(ierr);
6648e59246SSatish Balay   for ( i=0; i<nbs; i++ ){
6748e59246SSatish Balay     ierr = TableAdd(baij->colmap,baij->garray[i]+1,i*bs+1);CHKERRQ(ierr);
6848e59246SSatish Balay   }
6948e59246SSatish Balay #else
70758f045eSSatish Balay   baij->colmap = (int *) PetscMalloc((baij->Nbs+1)*sizeof(int));CHKPTRQ(baij->colmap);
7157b952d6SSatish Balay   PLogObjectMemory(mat,baij->Nbs*sizeof(int));
72549d3d68SSatish Balay   ierr = PetscMemzero(baij->colmap,baij->Nbs*sizeof(int));CHKERRQ(ierr);
73928fc39bSSatish Balay   for ( i=0; i<nbs; i++ ) baij->colmap[baij->garray[i]] = i*bs+1;
7448e59246SSatish Balay #endif
753a40ed3dSBarry Smith   PetscFunctionReturn(0);
7657b952d6SSatish Balay }
7757b952d6SSatish Balay 
7880c1aa95SSatish Balay #define CHUNKSIZE  10
7980c1aa95SSatish Balay 
80f5e9677aSSatish Balay #define  MatSetValues_SeqBAIJ_A_Private(row,col,value,addv) \
8180c1aa95SSatish Balay { \
8280c1aa95SSatish Balay  \
8380c1aa95SSatish Balay     brow = row/bs;  \
8480c1aa95SSatish Balay     rp   = aj + ai[brow]; ap = aa + bs2*ai[brow]; \
85ac7a638eSSatish Balay     rmax = aimax[brow]; nrow = ailen[brow]; \
8680c1aa95SSatish Balay       bcol = col/bs; \
8780c1aa95SSatish Balay       ridx = row % bs; cidx = col % bs; \
88ab26458aSBarry Smith       low = 0; high = nrow; \
89ab26458aSBarry Smith       while (high-low > 3) { \
90ab26458aSBarry Smith         t = (low+high)/2; \
91ab26458aSBarry Smith         if (rp[t] > bcol) high = t; \
92ab26458aSBarry Smith         else              low  = t; \
93ab26458aSBarry Smith       } \
94ab26458aSBarry Smith       for ( _i=low; _i<high; _i++ ) { \
9580c1aa95SSatish Balay         if (rp[_i] > bcol) break; \
9680c1aa95SSatish Balay         if (rp[_i] == bcol) { \
9780c1aa95SSatish Balay           bap  = ap +  bs2*_i + bs*cidx + ridx; \
98eada6651SSatish Balay           if (addv == ADD_VALUES) *bap += value;  \
99eada6651SSatish Balay           else                    *bap  = value;  \
100ac7a638eSSatish Balay           goto a_noinsert; \
10180c1aa95SSatish Balay         } \
10280c1aa95SSatish Balay       } \
10389280ab3SLois Curfman McInnes       if (a->nonew == 1) goto a_noinsert; \
104a8c6a408SBarry Smith       else if (a->nonew == -1) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Inserting a new nonzero into matrix"); \
10580c1aa95SSatish Balay       if (nrow >= rmax) { \
10680c1aa95SSatish Balay         /* there is no extra room in row, therefore enlarge */ \
10780c1aa95SSatish Balay         int    new_nz = ai[a->mbs] + CHUNKSIZE,len,*new_i,*new_j; \
10880c1aa95SSatish Balay         Scalar *new_a; \
10980c1aa95SSatish Balay  \
110a8c6a408SBarry Smith         if (a->nonew == -2) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Inserting a new nonzero in the matrix"); \
11189280ab3SLois Curfman McInnes  \
11280c1aa95SSatish Balay         /* malloc new storage space */ \
11380c1aa95SSatish Balay         len     = new_nz*(sizeof(int)+bs2*sizeof(Scalar))+(a->mbs+1)*sizeof(int); \
11480c1aa95SSatish Balay         new_a   = (Scalar *) PetscMalloc( len );CHKPTRQ(new_a); \
11580c1aa95SSatish Balay         new_j   = (int *) (new_a + bs2*new_nz); \
11680c1aa95SSatish Balay         new_i   = new_j + new_nz; \
11780c1aa95SSatish Balay  \
11880c1aa95SSatish Balay         /* copy over old data into new slots */ \
11980c1aa95SSatish Balay         for ( ii=0; ii<brow+1; ii++ ) {new_i[ii] = ai[ii];} \
12080c1aa95SSatish Balay         for ( ii=brow+1; ii<a->mbs+1; ii++ ) {new_i[ii] = ai[ii]+CHUNKSIZE;} \
121549d3d68SSatish Balay         ierr = PetscMemcpy(new_j,aj,(ai[brow]+nrow)*sizeof(int));CHKERRQ(ierr); \
12280c1aa95SSatish Balay         len = (new_nz - CHUNKSIZE - ai[brow] - nrow); \
123549d3d68SSatish Balay         ierr = PetscMemcpy(new_j+ai[brow]+nrow+CHUNKSIZE,aj+ai[brow]+nrow, \
124549d3d68SSatish Balay                           len*sizeof(int));CHKERRQ(ierr); \
125549d3d68SSatish Balay         ierr = PetscMemcpy(new_a,aa,(ai[brow]+nrow)*bs2*sizeof(Scalar));CHKERRQ(ierr); \
126549d3d68SSatish Balay         ierr = PetscMemzero(new_a+bs2*(ai[brow]+nrow),bs2*CHUNKSIZE*sizeof(Scalar));CHKERRQ(ierr); \
127549d3d68SSatish Balay         ierr = PetscMemcpy(new_a+bs2*(ai[brow]+nrow+CHUNKSIZE), \
128549d3d68SSatish Balay                     aa+bs2*(ai[brow]+nrow),bs2*len*sizeof(Scalar));CHKERRQ(ierr);  \
12980c1aa95SSatish Balay         /* free up old matrix storage */ \
130606d414cSSatish Balay         ierr = PetscFree(a->a);CHKERRQ(ierr);  \
131606d414cSSatish Balay         if (!a->singlemalloc) { \
132606d414cSSatish Balay           ierr = PetscFree(a->i);CHKERRQ(ierr); \
133606d414cSSatish Balay           ierr = PetscFree(a->j);CHKERRQ(ierr);\
134606d414cSSatish Balay         } \
13580c1aa95SSatish Balay         aa = a->a = new_a; ai = a->i = new_i; aj = a->j = new_j;  \
13680c1aa95SSatish Balay         a->singlemalloc = 1; \
13780c1aa95SSatish Balay  \
13880c1aa95SSatish Balay         rp   = aj + ai[brow]; ap = aa + bs2*ai[brow]; \
139ac7a638eSSatish Balay         rmax = aimax[brow] = aimax[brow] + CHUNKSIZE; \
14080c1aa95SSatish Balay         PLogObjectMemory(A,CHUNKSIZE*(sizeof(int) + bs2*sizeof(Scalar))); \
14180c1aa95SSatish Balay         a->maxnz += bs2*CHUNKSIZE; \
14280c1aa95SSatish Balay         a->reallocs++; \
14380c1aa95SSatish Balay         a->nz++; \
14480c1aa95SSatish Balay       } \
14580c1aa95SSatish Balay       N = nrow++ - 1;  \
14680c1aa95SSatish Balay       /* shift up all the later entries in this row */ \
14780c1aa95SSatish Balay       for ( ii=N; ii>=_i; ii-- ) { \
14880c1aa95SSatish Balay         rp[ii+1] = rp[ii]; \
149549d3d68SSatish Balay         ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(Scalar));CHKERRQ(ierr); \
15080c1aa95SSatish Balay       } \
151549d3d68SSatish Balay       if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(Scalar));CHKERRQ(ierr); }  \
15280c1aa95SSatish Balay       rp[_i]                      = bcol;  \
15380c1aa95SSatish Balay       ap[bs2*_i + bs*cidx + ridx] = value;  \
154ac7a638eSSatish Balay       a_noinsert:; \
15580c1aa95SSatish Balay     ailen[brow] = nrow; \
15680c1aa95SSatish Balay }
15757b952d6SSatish Balay 
158ac7a638eSSatish Balay #define  MatSetValues_SeqBAIJ_B_Private(row,col,value,addv) \
159ac7a638eSSatish Balay { \
160ac7a638eSSatish Balay  \
161ac7a638eSSatish Balay     brow = row/bs;  \
162ac7a638eSSatish Balay     rp   = bj + bi[brow]; ap = ba + bs2*bi[brow]; \
163ac7a638eSSatish Balay     rmax = bimax[brow]; nrow = bilen[brow]; \
164ac7a638eSSatish Balay       bcol = col/bs; \
165ac7a638eSSatish Balay       ridx = row % bs; cidx = col % bs; \
166ac7a638eSSatish Balay       low = 0; high = nrow; \
167ac7a638eSSatish Balay       while (high-low > 3) { \
168ac7a638eSSatish Balay         t = (low+high)/2; \
169ac7a638eSSatish Balay         if (rp[t] > bcol) high = t; \
170ac7a638eSSatish Balay         else              low  = t; \
171ac7a638eSSatish Balay       } \
172ac7a638eSSatish Balay       for ( _i=low; _i<high; _i++ ) { \
173ac7a638eSSatish Balay         if (rp[_i] > bcol) break; \
174ac7a638eSSatish Balay         if (rp[_i] == bcol) { \
175ac7a638eSSatish Balay           bap  = ap +  bs2*_i + bs*cidx + ridx; \
176ac7a638eSSatish Balay           if (addv == ADD_VALUES) *bap += value;  \
177ac7a638eSSatish Balay           else                    *bap  = value;  \
178ac7a638eSSatish Balay           goto b_noinsert; \
179ac7a638eSSatish Balay         } \
180ac7a638eSSatish Balay       } \
18189280ab3SLois Curfman McInnes       if (b->nonew == 1) goto b_noinsert; \
182a8c6a408SBarry Smith       else if (b->nonew == -1) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Inserting a new nonzero into matrix"); \
183ac7a638eSSatish Balay       if (nrow >= rmax) { \
184ac7a638eSSatish Balay         /* there is no extra room in row, therefore enlarge */ \
18574c639caSSatish Balay         int    new_nz = bi[b->mbs] + CHUNKSIZE,len,*new_i,*new_j; \
186ac7a638eSSatish Balay         Scalar *new_a; \
187ac7a638eSSatish Balay  \
188a8c6a408SBarry Smith         if (b->nonew == -2) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Inserting a new nonzero in the matrix"); \
18989280ab3SLois Curfman McInnes  \
190ac7a638eSSatish Balay         /* malloc new storage space */ \
19174c639caSSatish Balay         len     = new_nz*(sizeof(int)+bs2*sizeof(Scalar))+(b->mbs+1)*sizeof(int); \
192ac7a638eSSatish Balay         new_a   = (Scalar *) PetscMalloc( len );CHKPTRQ(new_a); \
193ac7a638eSSatish Balay         new_j   = (int *) (new_a + bs2*new_nz); \
194ac7a638eSSatish Balay         new_i   = new_j + new_nz; \
195ac7a638eSSatish Balay  \
196ac7a638eSSatish Balay         /* copy over old data into new slots */ \
197ac7a638eSSatish Balay         for ( ii=0; ii<brow+1; ii++ ) {new_i[ii] = bi[ii];} \
19874c639caSSatish Balay         for ( ii=brow+1; ii<b->mbs+1; ii++ ) {new_i[ii] = bi[ii]+CHUNKSIZE;} \
199549d3d68SSatish Balay         ierr = PetscMemcpy(new_j,bj,(bi[brow]+nrow)*sizeof(int));CHKERRQ(ierr); \
200ac7a638eSSatish Balay         len = (new_nz - CHUNKSIZE - bi[brow] - nrow); \
201549d3d68SSatish Balay         ierr = PetscMemcpy(new_j+bi[brow]+nrow+CHUNKSIZE,bj+bi[brow]+nrow, \
202549d3d68SSatish Balay                            len*sizeof(int));CHKERRQ(ierr); \
203549d3d68SSatish Balay         ierr = PetscMemcpy(new_a,ba,(bi[brow]+nrow)*bs2*sizeof(Scalar));CHKERRQ(ierr); \
204549d3d68SSatish Balay         ierr = PetscMemzero(new_a+bs2*(bi[brow]+nrow),bs2*CHUNKSIZE*sizeof(Scalar));CHKERRQ(ierr); \
205549d3d68SSatish Balay         ierr = PetscMemcpy(new_a+bs2*(bi[brow]+nrow+CHUNKSIZE), \
206549d3d68SSatish Balay                     ba+bs2*(bi[brow]+nrow),bs2*len*sizeof(Scalar));CHKERRQ(ierr);  \
207ac7a638eSSatish Balay         /* free up old matrix storage */ \
208606d414cSSatish Balay         ierr = PetscFree(b->a);CHKERRQ(ierr);  \
209606d414cSSatish Balay         if (!b->singlemalloc) { \
210606d414cSSatish Balay           ierr = PetscFree(b->i);CHKERRQ(ierr); \
211606d414cSSatish Balay           ierr = PetscFree(b->j);CHKERRQ(ierr); \
212606d414cSSatish Balay         } \
21374c639caSSatish Balay         ba = b->a = new_a; bi = b->i = new_i; bj = b->j = new_j;  \
21474c639caSSatish Balay         b->singlemalloc = 1; \
215ac7a638eSSatish Balay  \
216ac7a638eSSatish Balay         rp   = bj + bi[brow]; ap = ba + bs2*bi[brow]; \
217ac7a638eSSatish Balay         rmax = bimax[brow] = bimax[brow] + CHUNKSIZE; \
21874c639caSSatish Balay         PLogObjectMemory(B,CHUNKSIZE*(sizeof(int) + bs2*sizeof(Scalar))); \
21974c639caSSatish Balay         b->maxnz += bs2*CHUNKSIZE; \
22074c639caSSatish Balay         b->reallocs++; \
22174c639caSSatish Balay         b->nz++; \
222ac7a638eSSatish Balay       } \
223ac7a638eSSatish Balay       N = nrow++ - 1;  \
224ac7a638eSSatish Balay       /* shift up all the later entries in this row */ \
225ac7a638eSSatish Balay       for ( ii=N; ii>=_i; ii-- ) { \
226ac7a638eSSatish Balay         rp[ii+1] = rp[ii]; \
227549d3d68SSatish Balay         ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(Scalar));CHKERRQ(ierr); \
228ac7a638eSSatish Balay       } \
229549d3d68SSatish Balay       if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(Scalar));CHKERRQ(ierr);}  \
230ac7a638eSSatish Balay       rp[_i]                      = bcol;  \
231ac7a638eSSatish Balay       ap[bs2*_i + bs*cidx + ridx] = value;  \
232ac7a638eSSatish Balay       b_noinsert:; \
233ac7a638eSSatish Balay     bilen[brow] = nrow; \
234ac7a638eSSatish Balay }
235ac7a638eSSatish Balay 
2365615d1e5SSatish Balay #undef __FUNC__
2375615d1e5SSatish Balay #define __FUNC__ "MatSetValues_MPIBAIJ"
238ec1ea8d8SLois Curfman McInnes int MatSetValues_MPIBAIJ(Mat mat,int m,int *im,int n,int *in,Scalar *v,InsertMode addv)
23957b952d6SSatish Balay {
24057b952d6SSatish Balay   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *) mat->data;
24157b952d6SSatish Balay   Scalar      value;
2424fa0d573SSatish Balay   int         ierr,i,j,row,col;
2434fa0d573SSatish Balay   int         roworiented = baij->roworiented,rstart_orig=baij->rstart_bs ;
2444fa0d573SSatish Balay   int         rend_orig=baij->rend_bs,cstart_orig=baij->cstart_bs;
2454fa0d573SSatish Balay   int         cend_orig=baij->cend_bs,bs=baij->bs;
24657b952d6SSatish Balay 
247eada6651SSatish Balay   /* Some Variables required in the macro */
24880c1aa95SSatish Balay   Mat         A = baij->A;
24980c1aa95SSatish Balay   Mat_SeqBAIJ *a = (Mat_SeqBAIJ *) (A)->data;
250ac7a638eSSatish Balay   int         *aimax=a->imax,*ai=a->i,*ailen=a->ilen,*aj=a->j;
251ac7a638eSSatish Balay   Scalar      *aa=a->a;
252ac7a638eSSatish Balay 
253ac7a638eSSatish Balay   Mat         B = baij->B;
254ac7a638eSSatish Balay   Mat_SeqBAIJ *b = (Mat_SeqBAIJ *) (B)->data;
255ac7a638eSSatish Balay   int         *bimax=b->imax,*bi=b->i,*bilen=b->ilen,*bj=b->j;
256ac7a638eSSatish Balay   Scalar      *ba=b->a;
257ac7a638eSSatish Balay 
258ac7a638eSSatish Balay   int         *rp,ii,nrow,_i,rmax,N,brow,bcol;
259ab26458aSBarry Smith   int         low,high,t,ridx,cidx,bs2=a->bs2;
260ac7a638eSSatish Balay   Scalar      *ap,*bap;
26180c1aa95SSatish Balay 
262d64ed03dSBarry Smith   PetscFunctionBegin;
26357b952d6SSatish Balay   for ( i=0; i<m; i++ ) {
2645ef9f2a5SBarry Smith     if (im[i] < 0) continue;
265aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g)
266a8c6a408SBarry Smith     if (im[i] >= baij->M) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Row too large");
267639f9d9dSBarry Smith #endif
26857b952d6SSatish Balay     if (im[i] >= rstart_orig && im[i] < rend_orig) {
26957b952d6SSatish Balay       row = im[i] - rstart_orig;
27057b952d6SSatish Balay       for ( j=0; j<n; j++ ) {
27157b952d6SSatish Balay         if (in[j] >= cstart_orig && in[j] < cend_orig){
27257b952d6SSatish Balay           col = in[j] - cstart_orig;
27357b952d6SSatish Balay           if (roworiented) value = v[i*n+j]; else value = v[i+j*m];
274f5e9677aSSatish Balay           MatSetValues_SeqBAIJ_A_Private(row,col,value,addv);
27580c1aa95SSatish Balay           /* ierr = MatSetValues_SeqBAIJ(baij->A,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */
27673959e64SBarry Smith         } else if (in[j] < 0) continue;
277aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g)
278a8c6a408SBarry Smith         else if (in[j] >= baij->N) {SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Col too large");}
279639f9d9dSBarry Smith #endif
28057b952d6SSatish Balay         else {
28157b952d6SSatish Balay           if (mat->was_assembled) {
282905e6a2fSBarry Smith             if (!baij->colmap) {
283905e6a2fSBarry Smith               ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
284905e6a2fSBarry Smith             }
285aa482453SBarry Smith #if defined (PETSC_USE_CTABLE)
286fa46199cSSatish Balay             ierr = TableFind(baij->colmap, in[j]/bs + 1,&col);CHKERRQ(ierr);
287fa46199cSSatish Balay             col  = col - 1 + in[j]%bs;
28848e59246SSatish Balay #else
289905e6a2fSBarry Smith             col = baij->colmap[in[j]/bs] - 1 + in[j]%bs;
29048e59246SSatish Balay #endif
29157b952d6SSatish Balay             if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) {
29257b952d6SSatish Balay               ierr = DisAssemble_MPIBAIJ(mat);CHKERRQ(ierr);
29357b952d6SSatish Balay               col =  in[j];
2949bf004c3SSatish Balay               /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */
2959bf004c3SSatish Balay               B = baij->B;
2969bf004c3SSatish Balay               b = (Mat_SeqBAIJ *) (B)->data;
2979bf004c3SSatish Balay               bimax=b->imax;bi=b->i;bilen=b->ilen;bj=b->j;
2989bf004c3SSatish Balay               ba=b->a;
29957b952d6SSatish Balay             }
300d64ed03dSBarry Smith           } else col = in[j];
30157b952d6SSatish Balay           if (roworiented) value = v[i*n+j]; else value = v[i+j*m];
302ac7a638eSSatish Balay           MatSetValues_SeqBAIJ_B_Private(row,col,value,addv);
303ac7a638eSSatish Balay           /* ierr = MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */
30457b952d6SSatish Balay         }
30557b952d6SSatish Balay       }
306d64ed03dSBarry Smith     } else {
30790f02eecSBarry Smith       if ( !baij->donotstash) {
308ff2fd236SBarry Smith         if (roworiented) {
3098798bf22SSatish Balay           ierr = MatStashValuesRow_Private(&mat->stash,im[i],n,in,v+i*n);CHKERRQ(ierr);
310ff2fd236SBarry Smith         } else {
3118798bf22SSatish Balay           ierr = MatStashValuesCol_Private(&mat->stash,im[i],n,in,v+i,m);CHKERRQ(ierr);
31257b952d6SSatish Balay         }
31357b952d6SSatish Balay       }
31457b952d6SSatish Balay     }
31590f02eecSBarry Smith   }
3163a40ed3dSBarry Smith   PetscFunctionReturn(0);
31757b952d6SSatish Balay }
31857b952d6SSatish Balay 
319ab26458aSBarry Smith #undef __FUNC__
320ab26458aSBarry Smith #define __FUNC__ "MatSetValuesBlocked_MPIBAIJ"
321ec1ea8d8SLois Curfman McInnes int MatSetValuesBlocked_MPIBAIJ(Mat mat,int m,int *im,int n,int *in,Scalar *v,InsertMode addv)
322ab26458aSBarry Smith {
323ab26458aSBarry Smith   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *) mat->data;
32430793edcSSatish Balay   Scalar      *value,*barray=baij->barray;
3257ef1d9bdSSatish Balay   int         ierr,i,j,ii,jj,row,col;
326ab26458aSBarry Smith   int         roworiented = baij->roworiented,rstart=baij->rstart ;
327ab26458aSBarry Smith   int         rend=baij->rend,cstart=baij->cstart,stepval;
328ab26458aSBarry Smith   int         cend=baij->cend,bs=baij->bs,bs2=baij->bs2;
329ab26458aSBarry Smith 
33030793edcSSatish Balay   if(!barray) {
33147513183SBarry Smith     baij->barray = barray = (Scalar*) PetscMalloc(bs2*sizeof(Scalar));CHKPTRQ(barray);
33230793edcSSatish Balay   }
33330793edcSSatish Balay 
334ab26458aSBarry Smith   if (roworiented) {
335ab26458aSBarry Smith     stepval = (n-1)*bs;
336ab26458aSBarry Smith   } else {
337ab26458aSBarry Smith     stepval = (m-1)*bs;
338ab26458aSBarry Smith   }
339ab26458aSBarry Smith   for ( i=0; i<m; i++ ) {
3405ef9f2a5SBarry Smith     if (im[i] < 0) continue;
341aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g)
3425ef9f2a5SBarry Smith     if (im[i] >= baij->Mbs) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,0,"Row too large, row %d max %d",im[i],baij->Mbs);
343ab26458aSBarry Smith #endif
344ab26458aSBarry Smith     if (im[i] >= rstart && im[i] < rend) {
345ab26458aSBarry Smith       row = im[i] - rstart;
346ab26458aSBarry Smith       for ( j=0; j<n; j++ ) {
34715b57d14SSatish Balay         /* If NumCol = 1 then a copy is not required */
34815b57d14SSatish Balay         if ((roworiented) && (n == 1)) {
34915b57d14SSatish Balay           barray = v + i*bs2;
35015b57d14SSatish Balay         } else if((!roworiented) && (m == 1)) {
35115b57d14SSatish Balay           barray = v + j*bs2;
35215b57d14SSatish Balay         } else { /* Here a copy is required */
353ab26458aSBarry Smith           if (roworiented) {
354ab26458aSBarry Smith             value = v + i*(stepval+bs)*bs + j*bs;
355ab26458aSBarry Smith           } else {
356ab26458aSBarry Smith             value = v + j*(stepval+bs)*bs + i*bs;
357abef11f7SSatish Balay           }
35847513183SBarry Smith           for ( ii=0; ii<bs; ii++,value+=stepval ) {
35947513183SBarry Smith             for (jj=0; jj<bs; jj++ ) {
36030793edcSSatish Balay               *barray++  = *value++;
36147513183SBarry Smith             }
36247513183SBarry Smith           }
36330793edcSSatish Balay           barray -=bs2;
36415b57d14SSatish Balay         }
365abef11f7SSatish Balay 
366abef11f7SSatish Balay         if (in[j] >= cstart && in[j] < cend){
367abef11f7SSatish Balay           col  = in[j] - cstart;
36830793edcSSatish Balay           ierr = MatSetValuesBlocked_SeqBAIJ(baij->A,1,&row,1,&col,barray,addv);CHKERRQ(ierr);
369ab26458aSBarry Smith         }
3705ef9f2a5SBarry Smith         else if (in[j] < 0) continue;
371aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g)
3725ef9f2a5SBarry Smith         else if (in[j] >= baij->Nbs) {SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,0,"Column too large, col %d max %d",in[j],baij->Nbs);}
373ab26458aSBarry Smith #endif
374ab26458aSBarry Smith         else {
375ab26458aSBarry Smith           if (mat->was_assembled) {
376ab26458aSBarry Smith             if (!baij->colmap) {
377ab26458aSBarry Smith               ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
378ab26458aSBarry Smith             }
379a5eb4965SSatish Balay 
380aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g)
381aa482453SBarry Smith #if defined (PETSC_USE_CTABLE)
382fa46199cSSatish Balay             { int data;
383fa46199cSSatish Balay             ierr = TableFind(baij->colmap,in[j]+1,&data);CHKERRQ(ierr);
384fa46199cSSatish Balay             if((data - 1) % bs)
38548e59246SSatish Balay 	      {SETERRQ(PETSC_ERR_PLIB,0,"Incorrect colmap");}
386fa46199cSSatish Balay             }
38748e59246SSatish Balay #else
388a8c6a408SBarry Smith             if ((baij->colmap[in[j]] - 1) % bs) {SETERRQ(PETSC_ERR_PLIB,0,"Incorrect colmap");}
389a5eb4965SSatish Balay #endif
39048e59246SSatish Balay #endif
391aa482453SBarry Smith #if defined (PETSC_USE_CTABLE)
392fa46199cSSatish Balay 	    ierr = TableFind(baij->colmap,in[j]+1,&col);CHKERRQ(ierr);
393fa46199cSSatish Balay             col  = (col - 1)/bs;
39448e59246SSatish Balay #else
395a5eb4965SSatish Balay             col = (baij->colmap[in[j]] - 1)/bs;
39648e59246SSatish Balay #endif
397ab26458aSBarry Smith             if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) {
398ab26458aSBarry Smith               ierr = DisAssemble_MPIBAIJ(mat);CHKERRQ(ierr);
399ab26458aSBarry Smith               col =  in[j];
400ab26458aSBarry Smith             }
401ab26458aSBarry Smith           }
402ab26458aSBarry Smith           else col = in[j];
40330793edcSSatish Balay           ierr = MatSetValuesBlocked_SeqBAIJ(baij->B,1,&row,1,&col,barray,addv);CHKERRQ(ierr);
404ab26458aSBarry Smith         }
405ab26458aSBarry Smith       }
406d64ed03dSBarry Smith     } else {
407ab26458aSBarry Smith       if (!baij->donotstash) {
408ff2fd236SBarry Smith         if (roworiented) {
4098798bf22SSatish Balay           ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
410ff2fd236SBarry Smith         } else {
4118798bf22SSatish Balay           ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
412ff2fd236SBarry Smith         }
413abef11f7SSatish Balay       }
414ab26458aSBarry Smith     }
415ab26458aSBarry Smith   }
4163a40ed3dSBarry Smith   PetscFunctionReturn(0);
417ab26458aSBarry Smith }
4180bdbc534SSatish Balay #define HASH_KEY 0.6180339887
419c2760754SSatish Balay /* #define HASH1(size,key) ((int)((size)*fmod(((key)*HASH_KEY),1))) */
420c2760754SSatish Balay #define HASH(size,key,tmp) (tmp = (key)*HASH_KEY,(int)((size)*(tmp-(int)tmp)))
421c2760754SSatish Balay /* #define HASH(size,key,tmp) ((int)((size)*fmod(((key)*HASH_KEY),1))) */
4225615d1e5SSatish Balay #undef __FUNC__
4230bdbc534SSatish Balay #define __FUNC__ "MatSetValues_MPIBAIJ_HT"
4240bdbc534SSatish Balay int MatSetValues_MPIBAIJ_HT(Mat mat,int m,int *im,int n,int *in,Scalar *v,InsertMode addv)
4250bdbc534SSatish Balay {
4260bdbc534SSatish Balay   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *) mat->data;
4270bdbc534SSatish Balay   int         ierr,i,j,row,col;
4280bdbc534SSatish Balay   int         roworiented = baij->roworiented,rstart_orig=baij->rstart_bs ;
429c2760754SSatish Balay   int         rend_orig=baij->rend_bs,Nbs=baij->Nbs;
430c2760754SSatish Balay   int         h1,key,size=baij->ht_size,bs=baij->bs,*HT=baij->ht,idx;
431c2760754SSatish Balay   double      tmp;
432b9e4cc15SSatish Balay   Scalar      ** HD = baij->hd,value;
433aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g)
4344a15367fSSatish Balay   int         total_ct=baij->ht_total_ct,insert_ct=baij->ht_insert_ct;
4354a15367fSSatish Balay #endif
4360bdbc534SSatish Balay 
4370bdbc534SSatish Balay   PetscFunctionBegin;
4380bdbc534SSatish Balay 
4390bdbc534SSatish Balay   for ( i=0; i<m; i++ ) {
440aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g)
4410bdbc534SSatish Balay     if (im[i] < 0) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Negative row");
4420bdbc534SSatish Balay     if (im[i] >= baij->M) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Row too large");
4430bdbc534SSatish Balay #endif
4440bdbc534SSatish Balay       row = im[i];
445c2760754SSatish Balay     if (row >= rstart_orig && row < rend_orig) {
4460bdbc534SSatish Balay       for ( j=0; j<n; j++ ) {
4470bdbc534SSatish Balay         col = in[j];
4480bdbc534SSatish Balay         if (roworiented) value = v[i*n+j]; else value = v[i+j*m];
4490bdbc534SSatish Balay         /* Look up into the Hash Table */
450c2760754SSatish Balay         key = (row/bs)*Nbs+(col/bs)+1;
451c2760754SSatish Balay         h1  = HASH(size,key,tmp);
4520bdbc534SSatish Balay 
453c2760754SSatish Balay 
454c2760754SSatish Balay         idx = h1;
455aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g)
456187ce0cbSSatish Balay         insert_ct++;
457187ce0cbSSatish Balay         total_ct++;
458187ce0cbSSatish Balay         if (HT[idx] != key) {
459187ce0cbSSatish Balay           for ( idx=h1; (idx<size) && (HT[idx]!=key); idx++,total_ct++);
460187ce0cbSSatish Balay           if (idx == size) {
461187ce0cbSSatish Balay             for ( idx=0; (idx<h1) && (HT[idx]!=key); idx++,total_ct++);
462187ce0cbSSatish Balay             if (idx == h1) {
463187ce0cbSSatish Balay               SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"(row,col) has no entry in the hash table");
464187ce0cbSSatish Balay             }
465187ce0cbSSatish Balay           }
466187ce0cbSSatish Balay         }
467187ce0cbSSatish Balay #else
468c2760754SSatish Balay         if (HT[idx] != key) {
469c2760754SSatish Balay           for ( idx=h1; (idx<size) && (HT[idx]!=key); idx++);
470c2760754SSatish Balay           if (idx == size) {
471c2760754SSatish Balay             for ( idx=0; (idx<h1) && (HT[idx]!=key); idx++);
472c2760754SSatish Balay             if (idx == h1) {
473c2760754SSatish Balay               SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"(row,col) has no entry in the hash table");
474c2760754SSatish Balay             }
475c2760754SSatish Balay           }
476c2760754SSatish Balay         }
477187ce0cbSSatish Balay #endif
478c2760754SSatish Balay         /* A HASH table entry is found, so insert the values at the correct address */
479c2760754SSatish Balay         if (addv == ADD_VALUES) *(HD[idx]+ (col % bs)*bs + (row % bs)) += value;
480c2760754SSatish Balay         else                    *(HD[idx]+ (col % bs)*bs + (row % bs))  = value;
4810bdbc534SSatish Balay       }
4820bdbc534SSatish Balay     } else {
4830bdbc534SSatish Balay       if (!baij->donotstash) {
484ff2fd236SBarry Smith         if (roworiented) {
4858798bf22SSatish Balay           ierr = MatStashValuesRow_Private(&mat->stash,im[i],n,in,v+i*n);CHKERRQ(ierr);
486ff2fd236SBarry Smith         } else {
4878798bf22SSatish Balay           ierr = MatStashValuesCol_Private(&mat->stash,im[i],n,in,v+i,m);CHKERRQ(ierr);
4880bdbc534SSatish Balay         }
4890bdbc534SSatish Balay       }
4900bdbc534SSatish Balay     }
4910bdbc534SSatish Balay   }
492aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g)
493187ce0cbSSatish Balay   baij->ht_total_ct = total_ct;
494187ce0cbSSatish Balay   baij->ht_insert_ct = insert_ct;
495187ce0cbSSatish Balay #endif
4960bdbc534SSatish Balay   PetscFunctionReturn(0);
4970bdbc534SSatish Balay }
4980bdbc534SSatish Balay 
4990bdbc534SSatish Balay #undef __FUNC__
5000bdbc534SSatish Balay #define __FUNC__ "MatSetValuesBlocked_MPIBAIJ_HT"
5010bdbc534SSatish Balay int MatSetValuesBlocked_MPIBAIJ_HT(Mat mat,int m,int *im,int n,int *in,Scalar *v,InsertMode addv)
5020bdbc534SSatish Balay {
5030bdbc534SSatish Balay   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *) mat->data;
5048798bf22SSatish Balay   int         ierr,i,j,ii,jj,row,col;
5050bdbc534SSatish Balay   int         roworiented = baij->roworiented,rstart=baij->rstart ;
506b4cc0f5aSSatish Balay   int         rend=baij->rend,stepval,bs=baij->bs,bs2=baij->bs2;
507c2760754SSatish Balay   int         h1,key,size=baij->ht_size,idx,*HT=baij->ht,Nbs=baij->Nbs;
508c2760754SSatish Balay   double      tmp;
509187ce0cbSSatish Balay   Scalar      ** HD = baij->hd,*value,*v_t,*baij_a;
510aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g)
5114a15367fSSatish Balay   int         total_ct=baij->ht_total_ct,insert_ct=baij->ht_insert_ct;
5124a15367fSSatish Balay #endif
5130bdbc534SSatish Balay 
514d0a41580SSatish Balay   PetscFunctionBegin;
515d0a41580SSatish Balay 
5160bdbc534SSatish Balay   if (roworiented) {
5170bdbc534SSatish Balay     stepval = (n-1)*bs;
5180bdbc534SSatish Balay   } else {
5190bdbc534SSatish Balay     stepval = (m-1)*bs;
5200bdbc534SSatish Balay   }
5210bdbc534SSatish Balay   for ( i=0; i<m; i++ ) {
522aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g)
5230bdbc534SSatish Balay     if (im[i] < 0) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Negative row");
5240bdbc534SSatish Balay     if (im[i] >= baij->Mbs) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Row too large");
5250bdbc534SSatish Balay #endif
5260bdbc534SSatish Balay     row   = im[i];
527187ce0cbSSatish Balay     v_t   = v + i*bs2;
528c2760754SSatish Balay     if (row >= rstart && row < rend) {
5290bdbc534SSatish Balay       for ( j=0; j<n; j++ ) {
5300bdbc534SSatish Balay         col = in[j];
5310bdbc534SSatish Balay 
5320bdbc534SSatish Balay         /* Look up into the Hash Table */
533c2760754SSatish Balay         key = row*Nbs+col+1;
534c2760754SSatish Balay         h1  = HASH(size,key,tmp);
5350bdbc534SSatish Balay 
536c2760754SSatish Balay         idx = h1;
537aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g)
538187ce0cbSSatish Balay         total_ct++;
539187ce0cbSSatish Balay         insert_ct++;
540187ce0cbSSatish Balay        if (HT[idx] != key) {
541187ce0cbSSatish Balay           for ( idx=h1; (idx<size) && (HT[idx]!=key); idx++,total_ct++);
542187ce0cbSSatish Balay           if (idx == size) {
543187ce0cbSSatish Balay             for ( idx=0; (idx<h1) && (HT[idx]!=key); idx++,total_ct++);
544187ce0cbSSatish Balay             if (idx == h1) {
545187ce0cbSSatish Balay               SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"(row,col) has no entry in the hash table");
546187ce0cbSSatish Balay             }
547187ce0cbSSatish Balay           }
548187ce0cbSSatish Balay         }
549187ce0cbSSatish Balay #else
550c2760754SSatish Balay         if (HT[idx] != key) {
551c2760754SSatish Balay           for ( idx=h1; (idx<size) && (HT[idx]!=key); idx++);
552c2760754SSatish Balay           if (idx == size) {
553c2760754SSatish Balay             for ( idx=0; (idx<h1) && (HT[idx]!=key); idx++);
554c2760754SSatish Balay             if (idx == h1) {
555c2760754SSatish Balay               SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"(row,col) has no entry in the hash table");
556c2760754SSatish Balay             }
557c2760754SSatish Balay           }
558c2760754SSatish Balay         }
559187ce0cbSSatish Balay #endif
560c2760754SSatish Balay         baij_a = HD[idx];
5610bdbc534SSatish Balay         if (roworiented) {
562c2760754SSatish Balay           /*value = v + i*(stepval+bs)*bs + j*bs;*/
563187ce0cbSSatish Balay           /* value = v + (i*(stepval+bs)+j)*bs; */
564187ce0cbSSatish Balay           value = v_t;
565187ce0cbSSatish Balay           v_t  += bs;
566fef45726SSatish Balay           if (addv == ADD_VALUES) {
567c2760754SSatish Balay             for ( ii=0; ii<bs; ii++,value+=stepval) {
568c2760754SSatish Balay               for ( jj=ii; jj<bs2; jj+=bs ) {
569fef45726SSatish Balay                 baij_a[jj]  += *value++;
570b4cc0f5aSSatish Balay               }
571b4cc0f5aSSatish Balay             }
572fef45726SSatish Balay           } else {
573c2760754SSatish Balay             for ( ii=0; ii<bs; ii++,value+=stepval) {
574c2760754SSatish Balay               for ( jj=ii; jj<bs2; jj+=bs ) {
575fef45726SSatish Balay                 baij_a[jj]  = *value++;
576fef45726SSatish Balay               }
577fef45726SSatish Balay             }
578fef45726SSatish Balay           }
5790bdbc534SSatish Balay         } else {
5800bdbc534SSatish Balay           value = v + j*(stepval+bs)*bs + i*bs;
581fef45726SSatish Balay           if (addv == ADD_VALUES) {
582b4cc0f5aSSatish Balay             for ( ii=0; ii<bs; ii++,value+=stepval,baij_a+=bs ) {
5830bdbc534SSatish Balay               for ( jj=0; jj<bs; jj++ ) {
584fef45726SSatish Balay                 baij_a[jj]  += *value++;
585fef45726SSatish Balay               }
586fef45726SSatish Balay             }
587fef45726SSatish Balay           } else {
588fef45726SSatish Balay             for ( ii=0; ii<bs; ii++,value+=stepval,baij_a+=bs ) {
589fef45726SSatish Balay               for ( jj=0; jj<bs; jj++ ) {
590fef45726SSatish Balay                 baij_a[jj]  = *value++;
591fef45726SSatish Balay               }
592b4cc0f5aSSatish Balay             }
5930bdbc534SSatish Balay           }
5940bdbc534SSatish Balay         }
5950bdbc534SSatish Balay       }
5960bdbc534SSatish Balay     } else {
5970bdbc534SSatish Balay       if (!baij->donotstash) {
5980bdbc534SSatish Balay         if (roworiented) {
5998798bf22SSatish Balay           ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
6000bdbc534SSatish Balay         } else {
6018798bf22SSatish Balay           ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
6020bdbc534SSatish Balay         }
6030bdbc534SSatish Balay       }
6040bdbc534SSatish Balay     }
6050bdbc534SSatish Balay   }
606aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g)
607187ce0cbSSatish Balay   baij->ht_total_ct = total_ct;
608187ce0cbSSatish Balay   baij->ht_insert_ct = insert_ct;
609187ce0cbSSatish Balay #endif
6100bdbc534SSatish Balay   PetscFunctionReturn(0);
6110bdbc534SSatish Balay }
612133cdb44SSatish Balay 
6130bdbc534SSatish Balay #undef __FUNC__
6145615d1e5SSatish Balay #define __FUNC__ "MatGetValues_MPIBAIJ"
615ec1ea8d8SLois Curfman McInnes int MatGetValues_MPIBAIJ(Mat mat,int m,int *idxm,int n,int *idxn,Scalar *v)
616d6de1c52SSatish Balay {
617d6de1c52SSatish Balay   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *) mat->data;
618d6de1c52SSatish Balay   int        bs=baij->bs,ierr,i,j, bsrstart = baij->rstart*bs, bsrend = baij->rend*bs;
61948e59246SSatish Balay   int        bscstart = baij->cstart*bs, bscend = baij->cend*bs,row,col,data;
620d6de1c52SSatish Balay 
621133cdb44SSatish Balay   PetscFunctionBegin;
622d6de1c52SSatish Balay   for ( i=0; i<m; i++ ) {
623a8c6a408SBarry Smith     if (idxm[i] < 0) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Negative row");
624a8c6a408SBarry Smith     if (idxm[i] >= baij->M) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Row too large");
625d6de1c52SSatish Balay     if (idxm[i] >= bsrstart && idxm[i] < bsrend) {
626d6de1c52SSatish Balay       row = idxm[i] - bsrstart;
627d6de1c52SSatish Balay       for ( j=0; j<n; j++ ) {
628a8c6a408SBarry Smith         if (idxn[j] < 0) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Negative column");
629a8c6a408SBarry Smith         if (idxn[j] >= baij->N) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Column too large");
630d6de1c52SSatish Balay         if (idxn[j] >= bscstart && idxn[j] < bscend){
631d6de1c52SSatish Balay           col = idxn[j] - bscstart;
63298dd23e9SBarry Smith           ierr = MatGetValues_SeqBAIJ(baij->A,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr);
633d64ed03dSBarry Smith         } else {
634905e6a2fSBarry Smith           if (!baij->colmap) {
635905e6a2fSBarry Smith             ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
636905e6a2fSBarry Smith           }
637aa482453SBarry Smith #if defined (PETSC_USE_CTABLE)
638fa46199cSSatish Balay           ierr = TableFind(baij->colmap,idxn[j]/bs+1,&data);CHKERRQ(ierr);
639fa46199cSSatish Balay           data --;
64048e59246SSatish Balay #else
64148e59246SSatish Balay           data = baij->colmap[idxn[j]/bs]-1;
64248e59246SSatish Balay #endif
64348e59246SSatish Balay           if((data < 0) || (baij->garray[data/bs] != idxn[j]/bs)) *(v+i*n+j) = 0.0;
644d9d09a02SSatish Balay           else {
64548e59246SSatish Balay             col  = data + idxn[j]%bs;
64698dd23e9SBarry Smith             ierr = MatGetValues_SeqBAIJ(baij->B,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr);
647d6de1c52SSatish Balay           }
648d6de1c52SSatish Balay         }
649d6de1c52SSatish Balay       }
650d64ed03dSBarry Smith     } else {
651a8c6a408SBarry Smith       SETERRQ(PETSC_ERR_SUP,0,"Only local values currently supported");
652d6de1c52SSatish Balay     }
653d6de1c52SSatish Balay   }
6543a40ed3dSBarry Smith  PetscFunctionReturn(0);
655d6de1c52SSatish Balay }
656d6de1c52SSatish Balay 
6575615d1e5SSatish Balay #undef __FUNC__
6585615d1e5SSatish Balay #define __FUNC__ "MatNorm_MPIBAIJ"
659ec1ea8d8SLois Curfman McInnes int MatNorm_MPIBAIJ(Mat mat,NormType type,double *norm)
660d6de1c52SSatish Balay {
661d6de1c52SSatish Balay   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *) mat->data;
662d6de1c52SSatish Balay   Mat_SeqBAIJ *amat = (Mat_SeqBAIJ*) baij->A->data, *bmat = (Mat_SeqBAIJ*) baij->B->data;
663acdf5bf4SSatish Balay   int        ierr, i,bs2=baij->bs2;
664d6de1c52SSatish Balay   double     sum = 0.0;
665d6de1c52SSatish Balay   Scalar     *v;
666d6de1c52SSatish Balay 
667d64ed03dSBarry Smith   PetscFunctionBegin;
668d6de1c52SSatish Balay   if (baij->size == 1) {
669d6de1c52SSatish Balay     ierr =  MatNorm(baij->A,type,norm);CHKERRQ(ierr);
670d6de1c52SSatish Balay   } else {
671d6de1c52SSatish Balay     if (type == NORM_FROBENIUS) {
672d6de1c52SSatish Balay       v = amat->a;
673d6de1c52SSatish Balay       for (i=0; i<amat->nz*bs2; i++ ) {
674aa482453SBarry Smith #if defined(PETSC_USE_COMPLEX)
675e20fef11SSatish Balay         sum += PetscReal(PetscConj(*v)*(*v)); v++;
676d6de1c52SSatish Balay #else
677d6de1c52SSatish Balay         sum += (*v)*(*v); v++;
678d6de1c52SSatish Balay #endif
679d6de1c52SSatish Balay       }
680d6de1c52SSatish Balay       v = bmat->a;
681d6de1c52SSatish Balay       for (i=0; i<bmat->nz*bs2; i++ ) {
682aa482453SBarry Smith #if defined(PETSC_USE_COMPLEX)
683e20fef11SSatish Balay         sum += PetscReal(PetscConj(*v)*(*v)); v++;
684d6de1c52SSatish Balay #else
685d6de1c52SSatish Balay         sum += (*v)*(*v); v++;
686d6de1c52SSatish Balay #endif
687d6de1c52SSatish Balay       }
688ca161407SBarry Smith       ierr = MPI_Allreduce(&sum,norm,1,MPI_DOUBLE,MPI_SUM,mat->comm);CHKERRQ(ierr);
689d6de1c52SSatish Balay       *norm = sqrt(*norm);
690d64ed03dSBarry Smith     } else {
691e3372554SBarry Smith       SETERRQ(PETSC_ERR_SUP,0,"No support for this norm yet");
692d6de1c52SSatish Balay     }
693d64ed03dSBarry Smith   }
6943a40ed3dSBarry Smith   PetscFunctionReturn(0);
695d6de1c52SSatish Balay }
69657b952d6SSatish Balay 
697bd7f49f5SSatish Balay 
698fef45726SSatish Balay /*
699fef45726SSatish Balay   Creates the hash table, and sets the table
700fef45726SSatish Balay   This table is created only once.
701fef45726SSatish Balay   If new entried need to be added to the matrix
702fef45726SSatish Balay   then the hash table has to be destroyed and
703fef45726SSatish Balay   recreated.
704fef45726SSatish Balay */
705fef45726SSatish Balay #undef __FUNC__
706fef45726SSatish Balay #define __FUNC__ "MatCreateHashTable_MPIBAIJ_Private"
707d0a41580SSatish Balay int MatCreateHashTable_MPIBAIJ_Private(Mat mat,double factor)
708596b8d2eSBarry Smith {
709596b8d2eSBarry Smith   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *) mat->data;
710596b8d2eSBarry Smith   Mat         A = baij->A, B=baij->B;
711596b8d2eSBarry Smith   Mat_SeqBAIJ *a=(Mat_SeqBAIJ *)A->data, *b=(Mat_SeqBAIJ *)B->data;
7120bdbc534SSatish Balay   int         i,j,k,nz=a->nz+b->nz,h1,*ai=a->i,*aj=a->j,*bi=b->i,*bj=b->j;
713549d3d68SSatish Balay   int         size,bs2=baij->bs2,rstart=baij->rstart,ierr;
714187ce0cbSSatish Balay   int         cstart=baij->cstart,*garray=baij->garray,row,col,Nbs=baij->Nbs;
715fef45726SSatish Balay   int         *HT,key;
7160bdbc534SSatish Balay   Scalar      **HD;
717c2760754SSatish Balay   double      tmp;
718aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g)
7194a15367fSSatish Balay   int         ct=0,max=0;
7204a15367fSSatish Balay #endif
721fef45726SSatish Balay 
722d64ed03dSBarry Smith   PetscFunctionBegin;
7230bdbc534SSatish Balay   baij->ht_size=(int)(factor*nz);
7240bdbc534SSatish Balay   size = baij->ht_size;
725fef45726SSatish Balay 
7260bdbc534SSatish Balay   if (baij->ht) {
7270bdbc534SSatish Balay     PetscFunctionReturn(0);
728596b8d2eSBarry Smith   }
7290bdbc534SSatish Balay 
730fef45726SSatish Balay   /* Allocate Memory for Hash Table */
731b9e4cc15SSatish Balay   baij->hd = (Scalar**)PetscMalloc((size)*(sizeof(int)+sizeof(Scalar*))+1);CHKPTRQ(baij->hd);
732b9e4cc15SSatish Balay   baij->ht = (int*)(baij->hd + size);
733b9e4cc15SSatish Balay   HD = baij->hd;
734a07cd24cSSatish Balay   HT = baij->ht;
735b9e4cc15SSatish Balay 
736b9e4cc15SSatish Balay 
737549d3d68SSatish Balay   ierr = PetscMemzero(HD,size*(sizeof(int)+sizeof(Scalar*)));CHKERRQ(ierr);
7380bdbc534SSatish Balay 
739596b8d2eSBarry Smith 
740596b8d2eSBarry Smith   /* Loop Over A */
7410bdbc534SSatish Balay   for ( i=0; i<a->mbs; i++ ) {
742596b8d2eSBarry Smith     for ( j=ai[i]; j<ai[i+1]; j++ ) {
7430bdbc534SSatish Balay       row = i+rstart;
7440bdbc534SSatish Balay       col = aj[j]+cstart;
745596b8d2eSBarry Smith 
746187ce0cbSSatish Balay       key = row*Nbs + col + 1;
747c2760754SSatish Balay       h1  = HASH(size,key,tmp);
7480bdbc534SSatish Balay       for ( k=0; k<size; k++ ){
7490bdbc534SSatish Balay         if (HT[(h1+k)%size] == 0.0) {
7500bdbc534SSatish Balay           HT[(h1+k)%size] = key;
7510bdbc534SSatish Balay           HD[(h1+k)%size] = a->a + j*bs2;
752596b8d2eSBarry Smith           break;
753aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g)
754187ce0cbSSatish Balay         } else {
755187ce0cbSSatish Balay           ct++;
756187ce0cbSSatish Balay #endif
757596b8d2eSBarry Smith         }
758187ce0cbSSatish Balay       }
759aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g)
760187ce0cbSSatish Balay       if (k> max) max = k;
761187ce0cbSSatish Balay #endif
762596b8d2eSBarry Smith     }
763596b8d2eSBarry Smith   }
764596b8d2eSBarry Smith   /* Loop Over B */
7650bdbc534SSatish Balay   for ( i=0; i<b->mbs; i++ ) {
766596b8d2eSBarry Smith     for ( j=bi[i]; j<bi[i+1]; j++ ) {
7670bdbc534SSatish Balay       row = i+rstart;
7680bdbc534SSatish Balay       col = garray[bj[j]];
769187ce0cbSSatish Balay       key = row*Nbs + col + 1;
770c2760754SSatish Balay       h1  = HASH(size,key,tmp);
7710bdbc534SSatish Balay       for ( k=0; k<size; k++ ){
7720bdbc534SSatish Balay         if (HT[(h1+k)%size] == 0.0) {
7730bdbc534SSatish Balay           HT[(h1+k)%size] = key;
7740bdbc534SSatish Balay           HD[(h1+k)%size] = b->a + j*bs2;
775596b8d2eSBarry Smith           break;
776aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g)
777187ce0cbSSatish Balay         } else {
778187ce0cbSSatish Balay           ct++;
779187ce0cbSSatish Balay #endif
780596b8d2eSBarry Smith         }
781187ce0cbSSatish Balay       }
782aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g)
783187ce0cbSSatish Balay       if (k> max) max = k;
784187ce0cbSSatish Balay #endif
785596b8d2eSBarry Smith     }
786596b8d2eSBarry Smith   }
787596b8d2eSBarry Smith 
788596b8d2eSBarry Smith   /* Print Summary */
789aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g)
790c2760754SSatish Balay   for ( i=0,j=0; i<size; i++)
791596b8d2eSBarry Smith     if (HT[i]) {j++;}
792187ce0cbSSatish Balay   PLogInfo(0,"MatCreateHashTable_MPIBAIJ_Private: Average Search = %5.2f,max search = %d\n",
793187ce0cbSSatish Balay            (j== 0)? 0.0:((double)(ct+j))/j,max);
794187ce0cbSSatish Balay #endif
7953a40ed3dSBarry Smith   PetscFunctionReturn(0);
796596b8d2eSBarry Smith }
79757b952d6SSatish Balay 
798bbb85fb3SSatish Balay #undef __FUNC__
799bbb85fb3SSatish Balay #define __FUNC__ "MatAssemblyBegin_MPIBAIJ"
800bbb85fb3SSatish Balay int MatAssemblyBegin_MPIBAIJ(Mat mat,MatAssemblyType mode)
801bbb85fb3SSatish Balay {
802bbb85fb3SSatish Balay   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *) mat->data;
803ff2fd236SBarry Smith   int         ierr,nstash,reallocs;
804bbb85fb3SSatish Balay   InsertMode  addv;
805bbb85fb3SSatish Balay 
806bbb85fb3SSatish Balay   PetscFunctionBegin;
807bbb85fb3SSatish Balay   if (baij->donotstash) {
808bbb85fb3SSatish Balay     PetscFunctionReturn(0);
809bbb85fb3SSatish Balay   }
810bbb85fb3SSatish Balay 
811bbb85fb3SSatish Balay   /* make sure all processors are either in INSERTMODE or ADDMODE */
812bbb85fb3SSatish Balay   ierr = MPI_Allreduce(&mat->insertmode,&addv,1,MPI_INT,MPI_BOR,mat->comm);CHKERRQ(ierr);
813bbb85fb3SSatish Balay   if (addv == (ADD_VALUES|INSERT_VALUES)) {
814bbb85fb3SSatish Balay     SETERRQ(PETSC_ERR_ARG_WRONGSTATE,0,"Some processors inserted others added");
815bbb85fb3SSatish Balay   }
816bbb85fb3SSatish Balay   mat->insertmode = addv; /* in case this processor had no cache */
817bbb85fb3SSatish Balay 
8188798bf22SSatish Balay   ierr = MatStashScatterBegin_Private(&mat->stash,baij->rowners_bs);CHKERRQ(ierr);
8198798bf22SSatish Balay   ierr = MatStashScatterBegin_Private(&mat->bstash,baij->rowners);CHKERRQ(ierr);
8208798bf22SSatish Balay   ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr);
8215a655dc6SBarry Smith   PLogInfo(0,"MatAssemblyBegin_MPIBAIJ:Stash has %d entries, uses %d mallocs.\n",nstash,reallocs);
8228798bf22SSatish Balay   ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr);
8235a655dc6SBarry Smith   PLogInfo(0,"MatAssemblyBegin_MPIBAIJ:Block-Stash has %d entries, uses %d mallocs.\n",nstash,reallocs);
824bbb85fb3SSatish Balay   PetscFunctionReturn(0);
825bbb85fb3SSatish Balay }
826bbb85fb3SSatish Balay 
827bbb85fb3SSatish Balay #undef __FUNC__
828bbb85fb3SSatish Balay #define __FUNC__ "MatAssemblyEnd_MPIBAIJ"
829bbb85fb3SSatish Balay int MatAssemblyEnd_MPIBAIJ(Mat mat,MatAssemblyType mode)
830bbb85fb3SSatish Balay {
831bbb85fb3SSatish Balay   Mat_MPIBAIJ *baij=(Mat_MPIBAIJ *) mat->data;
832a2d1c673SSatish Balay   Mat_SeqBAIJ *a=(Mat_SeqBAIJ*)baij->A->data,*b=(Mat_SeqBAIJ*)baij->B->data;
833a2d1c673SSatish Balay   int         i,j,rstart,ncols,n,ierr,flg,bs2=baij->bs2;
834a2d1c673SSatish Balay   int         *row,*col,other_disassembled,r1,r2,r3;
835bbb85fb3SSatish Balay   Scalar      *val;
836bbb85fb3SSatish Balay   InsertMode  addv = mat->insertmode;
837bbb85fb3SSatish Balay 
838bbb85fb3SSatish Balay   PetscFunctionBegin;
839bbb85fb3SSatish Balay   if (!baij->donotstash) {
840a2d1c673SSatish Balay     while (1) {
8418798bf22SSatish Balay       ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr);
842a2d1c673SSatish Balay       if (!flg) break;
843a2d1c673SSatish Balay 
844bbb85fb3SSatish Balay       for ( i=0; i<n; ) {
845bbb85fb3SSatish Balay         /* Now identify the consecutive vals belonging to the same row */
846bbb85fb3SSatish Balay         for ( j=i,rstart=row[j]; j<n; j++ ) { if (row[j] != rstart) break; }
847bbb85fb3SSatish Balay         if (j < n) ncols = j-i;
848bbb85fb3SSatish Balay         else       ncols = n-i;
849bbb85fb3SSatish Balay         /* Now assemble all these values with a single function call */
850bbb85fb3SSatish Balay         ierr = MatSetValues_MPIBAIJ(mat,1,row+i,ncols,col+i,val+i,addv);CHKERRQ(ierr);
851bbb85fb3SSatish Balay         i = j;
852bbb85fb3SSatish Balay       }
853bbb85fb3SSatish Balay     }
8548798bf22SSatish Balay     ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr);
855a2d1c673SSatish Balay     /* Now process the block-stash. Since the values are stashed column-oriented,
856a2d1c673SSatish Balay        set the roworiented flag to column oriented, and after MatSetValues()
857a2d1c673SSatish Balay        restore the original flags */
858a2d1c673SSatish Balay     r1 = baij->roworiented;
859a2d1c673SSatish Balay     r2 = a->roworiented;
860a2d1c673SSatish Balay     r3 = b->roworiented;
861a2d1c673SSatish Balay     baij->roworiented = 0;
862a2d1c673SSatish Balay     a->roworiented    = 0;
863a2d1c673SSatish Balay     b->roworiented    = 0;
864a2d1c673SSatish Balay     while (1) {
8658798bf22SSatish Balay       ierr = MatStashScatterGetMesg_Private(&mat->bstash,&n,&row,&col,&val,&flg);CHKERRQ(ierr);
866a2d1c673SSatish Balay       if (!flg) break;
867a2d1c673SSatish Balay 
868a2d1c673SSatish Balay       for ( i=0; i<n; ) {
869a2d1c673SSatish Balay         /* Now identify the consecutive vals belonging to the same row */
870a2d1c673SSatish Balay         for ( j=i,rstart=row[j]; j<n; j++ ) { if (row[j] != rstart) break; }
871a2d1c673SSatish Balay         if (j < n) ncols = j-i;
872a2d1c673SSatish Balay         else       ncols = n-i;
873a2d1c673SSatish Balay         ierr = MatSetValuesBlocked_MPIBAIJ(mat,1,row+i,ncols,col+i,val+i*bs2,addv);CHKERRQ(ierr);
874a2d1c673SSatish Balay         i = j;
875a2d1c673SSatish Balay       }
876a2d1c673SSatish Balay     }
8778798bf22SSatish Balay     ierr = MatStashScatterEnd_Private(&mat->bstash);CHKERRQ(ierr);
878a2d1c673SSatish Balay     baij->roworiented = r1;
879a2d1c673SSatish Balay     a->roworiented    = r2;
880a2d1c673SSatish Balay     b->roworiented    = r3;
881bbb85fb3SSatish Balay   }
882bbb85fb3SSatish Balay 
883bbb85fb3SSatish Balay   ierr = MatAssemblyBegin(baij->A,mode);CHKERRQ(ierr);
884bbb85fb3SSatish Balay   ierr = MatAssemblyEnd(baij->A,mode);CHKERRQ(ierr);
885bbb85fb3SSatish Balay 
886bbb85fb3SSatish Balay   /* determine if any processor has disassembled, if so we must
887bbb85fb3SSatish Balay      also disassemble ourselfs, in order that we may reassemble. */
888bbb85fb3SSatish Balay   /*
889bbb85fb3SSatish Balay      if nonzero structure of submatrix B cannot change then we know that
890bbb85fb3SSatish Balay      no processor disassembled thus we can skip this stuff
891bbb85fb3SSatish Balay   */
892bbb85fb3SSatish Balay   if (!((Mat_SeqBAIJ*) baij->B->data)->nonew)  {
893bbb85fb3SSatish Balay     ierr = MPI_Allreduce(&mat->was_assembled,&other_disassembled,1,MPI_INT,MPI_PROD,mat->comm);CHKERRQ(ierr);
894bbb85fb3SSatish Balay     if (mat->was_assembled && !other_disassembled) {
895bbb85fb3SSatish Balay       ierr = DisAssemble_MPIBAIJ(mat);CHKERRQ(ierr);
896bbb85fb3SSatish Balay     }
897bbb85fb3SSatish Balay   }
898bbb85fb3SSatish Balay 
899bbb85fb3SSatish Balay   if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) {
900bbb85fb3SSatish Balay     ierr = MatSetUpMultiply_MPIBAIJ(mat);CHKERRQ(ierr);
901bbb85fb3SSatish Balay   }
902bbb85fb3SSatish Balay   ierr = MatAssemblyBegin(baij->B,mode);CHKERRQ(ierr);
903bbb85fb3SSatish Balay   ierr = MatAssemblyEnd(baij->B,mode);CHKERRQ(ierr);
904bbb85fb3SSatish Balay 
905aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g)
906bbb85fb3SSatish Balay   if (baij->ht && mode== MAT_FINAL_ASSEMBLY) {
907bbb85fb3SSatish Balay     PLogInfo(0,"MatAssemblyEnd_MPIBAIJ:Average Hash Table Search in MatSetValues = %5.2f\n",
908bbb85fb3SSatish Balay              ((double)baij->ht_total_ct)/baij->ht_insert_ct);
909bbb85fb3SSatish Balay     baij->ht_total_ct  = 0;
910bbb85fb3SSatish Balay     baij->ht_insert_ct = 0;
911bbb85fb3SSatish Balay   }
912bbb85fb3SSatish Balay #endif
913bbb85fb3SSatish Balay   if (baij->ht_flag && !baij->ht && mode == MAT_FINAL_ASSEMBLY) {
914bbb85fb3SSatish Balay     ierr = MatCreateHashTable_MPIBAIJ_Private(mat,baij->ht_fact);CHKERRQ(ierr);
915bbb85fb3SSatish Balay     mat->ops->setvalues        = MatSetValues_MPIBAIJ_HT;
916bbb85fb3SSatish Balay     mat->ops->setvaluesblocked = MatSetValuesBlocked_MPIBAIJ_HT;
917bbb85fb3SSatish Balay   }
918bbb85fb3SSatish Balay 
919606d414cSSatish Balay   if (baij->rowvalues) {
920606d414cSSatish Balay     ierr = PetscFree(baij->rowvalues);CHKERRQ(ierr);
921606d414cSSatish Balay     baij->rowvalues = 0;
922606d414cSSatish Balay   }
923bbb85fb3SSatish Balay   PetscFunctionReturn(0);
924bbb85fb3SSatish Balay }
92557b952d6SSatish Balay 
926225e174dSSatish Balay /*
9275615d1e5SSatish Balay #undef __FUNC__
9285615d1e5SSatish Balay #define __FUNC__ "MatView_MPIBAIJ_Binary"
92957b952d6SSatish Balay static int MatView_MPIBAIJ_Binary(Mat mat,Viewer viewer)
93057b952d6SSatish Balay {
93157b952d6SSatish Balay   Mat_MPIBAIJ  *baij = (Mat_MPIBAIJ *) mat->data;
93257b952d6SSatish Balay   int          ierr;
93357b952d6SSatish Balay 
934d64ed03dSBarry Smith   PetscFunctionBegin;
93557b952d6SSatish Balay   if (baij->size == 1) {
93657b952d6SSatish Balay     ierr = MatView(baij->A,viewer);CHKERRQ(ierr);
937a8c6a408SBarry Smith   } else SETERRQ(PETSC_ERR_SUP,0,"Only uniprocessor output supported");
9383a40ed3dSBarry Smith   PetscFunctionReturn(0);
93957b952d6SSatish Balay }
940225e174dSSatish Balay */
94157b952d6SSatish Balay 
9425615d1e5SSatish Balay #undef __FUNC__
9437b2a1423SBarry Smith #define __FUNC__ "MatView_MPIBAIJ_ASCIIorDraworSocket"
9447b2a1423SBarry Smith static int MatView_MPIBAIJ_ASCIIorDraworSocket(Mat mat,Viewer viewer)
94557b952d6SSatish Balay {
94657b952d6SSatish Balay   Mat_MPIBAIJ  *baij = (Mat_MPIBAIJ *) mat->data;
94777ed5343SBarry Smith   int          ierr, format,bs = baij->bs, size = baij->size, rank = baij->rank;
94857b952d6SSatish Balay   FILE         *fd;
94957b952d6SSatish Balay   ViewerType   vtype;
95057b952d6SSatish Balay 
951d64ed03dSBarry Smith   PetscFunctionBegin;
95257b952d6SSatish Balay   ierr = ViewerGetType(viewer,&vtype);CHKERRQ(ierr);
9533f1db9ecSBarry Smith   if (PetscTypeCompare(vtype,ASCII_VIEWER)) {
954d41123aaSBarry Smith     ierr = ViewerGetFormat(viewer,&format);CHKERRQ(ierr);
955639f9d9dSBarry Smith     if (format == VIEWER_FORMAT_ASCII_INFO_LONG) {
9564e220ebcSLois Curfman McInnes       MatInfo info;
957d132466eSBarry Smith       ierr = MPI_Comm_rank(mat->comm,&rank);CHKERRQ(ierr);
95857b952d6SSatish Balay       ierr = ViewerASCIIGetPointer(viewer,&fd);CHKERRQ(ierr);
959d41123aaSBarry Smith       ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr);
960d132466eSBarry Smith       ierr = PetscSequentialPhaseBegin(mat->comm,1);CHKERRQ(ierr);
96157b952d6SSatish Balay       fprintf(fd,"[%d] Local rows %d nz %d nz alloced %d bs %d mem %d\n",
9624e220ebcSLois Curfman McInnes               rank,baij->m,(int)info.nz_used*bs,(int)info.nz_allocated*bs,
9634e220ebcSLois Curfman McInnes               baij->bs,(int)info.memory);
964d132466eSBarry Smith       ierr = MatGetInfo(baij->A,MAT_LOCAL,&info);CHKERRQ(ierr);
9654e220ebcSLois Curfman McInnes       fprintf(fd,"[%d] on-diagonal part: nz %d \n",rank,(int)info.nz_used*bs);
966d132466eSBarry Smith       ierr = MatGetInfo(baij->B,MAT_LOCAL,&info);CHKERRQ(ierr);
9674e220ebcSLois Curfman McInnes       fprintf(fd,"[%d] off-diagonal part: nz %d \n",rank,(int)info.nz_used*bs);
96857b952d6SSatish Balay       fflush(fd);
969d132466eSBarry Smith       ierr = PetscSequentialPhaseEnd(mat->comm,1);CHKERRQ(ierr);
97057b952d6SSatish Balay       ierr = VecScatterView(baij->Mvctx,viewer);CHKERRQ(ierr);
9713a40ed3dSBarry Smith       PetscFunctionReturn(0);
972d64ed03dSBarry Smith     } else if (format == VIEWER_FORMAT_ASCII_INFO) {
973d132466eSBarry Smith       ierr = PetscPrintf(mat->comm,"  block size is %d\n",bs);CHKERRQ(ierr);
9743a40ed3dSBarry Smith       PetscFunctionReturn(0);
97557b952d6SSatish Balay     }
97657b952d6SSatish Balay   }
97757b952d6SSatish Balay 
9783f1db9ecSBarry Smith   if (PetscTypeCompare(vtype,DRAW_VIEWER)) {
97957b952d6SSatish Balay     Draw       draw;
98057b952d6SSatish Balay     PetscTruth isnull;
98177ed5343SBarry Smith     ierr = ViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr);
9823a40ed3dSBarry Smith     ierr = DrawIsNull(draw,&isnull);CHKERRQ(ierr); if (isnull) PetscFunctionReturn(0);
98357b952d6SSatish Balay   }
98457b952d6SSatish Balay 
98557b952d6SSatish Balay   if (size == 1) {
98657b952d6SSatish Balay     ierr = MatView(baij->A,viewer);CHKERRQ(ierr);
987d64ed03dSBarry Smith   } else {
98857b952d6SSatish Balay     /* assemble the entire matrix onto first processor. */
98957b952d6SSatish Balay     Mat         A;
99057b952d6SSatish Balay     Mat_SeqBAIJ *Aloc;
99140011551SBarry Smith     int         M = baij->M, N = baij->N,*ai,*aj,col,i,j,k,*rvals;
99257b952d6SSatish Balay     int         mbs = baij->mbs;
99357b952d6SSatish Balay     Scalar      *a;
99457b952d6SSatish Balay 
99557b952d6SSatish Balay     if (!rank) {
99655843e3eSBarry Smith       ierr = MatCreateMPIBAIJ(mat->comm,baij->bs,M,N,M,N,0,PETSC_NULL,0,PETSC_NULL,&A);CHKERRQ(ierr);
997d64ed03dSBarry Smith     } else {
99855843e3eSBarry Smith       ierr = MatCreateMPIBAIJ(mat->comm,baij->bs,0,0,M,N,0,PETSC_NULL,0,PETSC_NULL,&A);CHKERRQ(ierr);
99957b952d6SSatish Balay     }
100057b952d6SSatish Balay     PLogObjectParent(mat,A);
100157b952d6SSatish Balay 
100257b952d6SSatish Balay     /* copy over the A part */
100357b952d6SSatish Balay     Aloc = (Mat_SeqBAIJ*) baij->A->data;
100457b952d6SSatish Balay     ai = Aloc->i; aj = Aloc->j; a = Aloc->a;
100557b952d6SSatish Balay     rvals = (int *) PetscMalloc(bs*sizeof(int));CHKPTRQ(rvals);
100657b952d6SSatish Balay 
100757b952d6SSatish Balay     for ( i=0; i<mbs; i++ ) {
100857b952d6SSatish Balay       rvals[0] = bs*(baij->rstart + i);
100957b952d6SSatish Balay       for ( j=1; j<bs; j++ ) { rvals[j] = rvals[j-1] + 1; }
101057b952d6SSatish Balay       for ( j=ai[i]; j<ai[i+1]; j++ ) {
101157b952d6SSatish Balay         col = (baij->cstart+aj[j])*bs;
101257b952d6SSatish Balay         for (k=0; k<bs; k++ ) {
1013cee3aa6bSSatish Balay           ierr = MatSetValues(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr);
1014cee3aa6bSSatish Balay           col++; a += bs;
101557b952d6SSatish Balay         }
101657b952d6SSatish Balay       }
101757b952d6SSatish Balay     }
101857b952d6SSatish Balay     /* copy over the B part */
101957b952d6SSatish Balay     Aloc = (Mat_SeqBAIJ*) baij->B->data;
102057b952d6SSatish Balay     ai = Aloc->i; aj = Aloc->j; a = Aloc->a;
102157b952d6SSatish Balay     for ( i=0; i<mbs; i++ ) {
102257b952d6SSatish Balay       rvals[0] = bs*(baij->rstart + i);
102357b952d6SSatish Balay       for ( j=1; j<bs; j++ ) { rvals[j] = rvals[j-1] + 1; }
102457b952d6SSatish Balay       for ( j=ai[i]; j<ai[i+1]; j++ ) {
102557b952d6SSatish Balay         col = baij->garray[aj[j]]*bs;
102657b952d6SSatish Balay         for (k=0; k<bs; k++ ) {
1027cee3aa6bSSatish Balay           ierr = MatSetValues(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr);
1028cee3aa6bSSatish Balay           col++; a += bs;
102957b952d6SSatish Balay         }
103057b952d6SSatish Balay       }
103157b952d6SSatish Balay     }
1032606d414cSSatish Balay     ierr = PetscFree(rvals);CHKERRQ(ierr);
10336d4a8577SBarry Smith     ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
10346d4a8577SBarry Smith     ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
103555843e3eSBarry Smith     /*
103655843e3eSBarry Smith        Everyone has to call to draw the matrix since the graphics waits are
103755843e3eSBarry Smith        synchronized across all processors that share the Draw object
103855843e3eSBarry Smith     */
10393f1db9ecSBarry Smith     if (!rank || PetscTypeCompare(vtype,DRAW_VIEWER)) {
104057b952d6SSatish Balay       ierr = MatView(((Mat_MPIBAIJ*)(A->data))->A,viewer);CHKERRQ(ierr);
104157b952d6SSatish Balay     }
104257b952d6SSatish Balay     ierr = MatDestroy(A);CHKERRQ(ierr);
104357b952d6SSatish Balay   }
10443a40ed3dSBarry Smith   PetscFunctionReturn(0);
104557b952d6SSatish Balay }
104657b952d6SSatish Balay 
104757b952d6SSatish Balay 
104857b952d6SSatish Balay 
10495615d1e5SSatish Balay #undef __FUNC__
10505615d1e5SSatish Balay #define __FUNC__ "MatView_MPIBAIJ"
1051e1311b90SBarry Smith int MatView_MPIBAIJ(Mat mat,Viewer viewer)
105257b952d6SSatish Balay {
105357b952d6SSatish Balay   int         ierr;
105457b952d6SSatish Balay   ViewerType  vtype;
105557b952d6SSatish Balay 
1056d64ed03dSBarry Smith   PetscFunctionBegin;
105757b952d6SSatish Balay   ierr = ViewerGetType(viewer,&vtype);CHKERRQ(ierr);
10583f1db9ecSBarry Smith   if (PetscTypeCompare(vtype,ASCII_VIEWER) || PetscTypeCompare(vtype,DRAW_VIEWER) ||
1059a84b093aSSatish Balay       PetscTypeCompare(vtype,SOCKET_VIEWER)|| PetscTypeCompare(vtype,BINARY_VIEWER)) {
10607b2a1423SBarry Smith     ierr = MatView_MPIBAIJ_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr);
1061a84b093aSSatish Balay     /*
10623f1db9ecSBarry Smith   } else if (PetscTypeCompare(vtype,BINARY_VIEWER)) {
10633a40ed3dSBarry Smith     ierr = MatView_MPIBAIJ_Binary(mat,viewer);CHKERRQ(ierr);
1064a84b093aSSatish Balay     */
10655cd90555SBarry Smith   } else {
10665cd90555SBarry Smith     SETERRQ(1,1,"Viewer type not supported by PETSc object");
106757b952d6SSatish Balay   }
10683a40ed3dSBarry Smith   PetscFunctionReturn(0);
106957b952d6SSatish Balay }
107057b952d6SSatish Balay 
10715615d1e5SSatish Balay #undef __FUNC__
10725615d1e5SSatish Balay #define __FUNC__ "MatDestroy_MPIBAIJ"
1073e1311b90SBarry Smith int MatDestroy_MPIBAIJ(Mat mat)
107479bdfe76SSatish Balay {
107579bdfe76SSatish Balay   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *) mat->data;
107679bdfe76SSatish Balay   int         ierr;
107779bdfe76SSatish Balay 
1078d64ed03dSBarry Smith   PetscFunctionBegin;
107998dd23e9SBarry Smith 
108098dd23e9SBarry Smith   if (mat->mapping) {
108198dd23e9SBarry Smith     ierr = ISLocalToGlobalMappingDestroy(mat->mapping);CHKERRQ(ierr);
108298dd23e9SBarry Smith   }
108398dd23e9SBarry Smith   if (mat->bmapping) {
108498dd23e9SBarry Smith     ierr = ISLocalToGlobalMappingDestroy(mat->bmapping);CHKERRQ(ierr);
108598dd23e9SBarry Smith   }
108661b13de0SBarry Smith   if (mat->rmap) {
108761b13de0SBarry Smith     ierr = MapDestroy(mat->rmap);CHKERRQ(ierr);
108861b13de0SBarry Smith   }
108961b13de0SBarry Smith   if (mat->cmap) {
109061b13de0SBarry Smith     ierr = MapDestroy(mat->cmap);CHKERRQ(ierr);
109161b13de0SBarry Smith   }
1092aa482453SBarry Smith #if defined(PETSC_USE_LOG)
1093e1311b90SBarry Smith   PLogObjectState((PetscObject)mat,"Rows=%d, Cols=%d",baij->M,baij->N);
109479bdfe76SSatish Balay #endif
109579bdfe76SSatish Balay 
10968798bf22SSatish Balay   ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr);
10978798bf22SSatish Balay   ierr = MatStashDestroy_Private(&mat->bstash);CHKERRQ(ierr);
10988798bf22SSatish Balay 
1099606d414cSSatish Balay   ierr = PetscFree(baij->rowners);CHKERRQ(ierr);
110079bdfe76SSatish Balay   ierr = MatDestroy(baij->A);CHKERRQ(ierr);
110179bdfe76SSatish Balay   ierr = MatDestroy(baij->B);CHKERRQ(ierr);
1102aa482453SBarry Smith #if defined (PETSC_USE_CTABLE)
1103606d414cSSatish Balay   if (baij->colmap) {ierr = TableDelete(baij->colmap);CHKERRQ(ierr);}
110448e59246SSatish Balay #else
1105606d414cSSatish Balay   if (baij->colmap) {ierr = PetscFree(baij->colmap);CHKERRQ(ierr);}
110648e59246SSatish Balay #endif
1107606d414cSSatish Balay   if (baij->garray) {ierr = PetscFree(baij->garray);CHKERRQ(ierr);}
1108606d414cSSatish Balay   if (baij->lvec)   {ierr = VecDestroy(baij->lvec);CHKERRQ(ierr);}
1109606d414cSSatish Balay   if (baij->Mvctx)  {ierr = VecScatterDestroy(baij->Mvctx);CHKERRQ(ierr);}
1110606d414cSSatish Balay   if (baij->rowvalues) {ierr = PetscFree(baij->rowvalues);CHKERRQ(ierr);}
1111606d414cSSatish Balay   if (baij->barray) {ierr = PetscFree(baij->barray);CHKERRQ(ierr);}
1112606d414cSSatish Balay   if (baij->hd) {ierr = PetscFree(baij->hd);CHKERRQ(ierr);}
1113606d414cSSatish Balay   ierr = PetscFree(baij);CHKERRQ(ierr);
111479bdfe76SSatish Balay   PLogObjectDestroy(mat);
111579bdfe76SSatish Balay   PetscHeaderDestroy(mat);
11163a40ed3dSBarry Smith   PetscFunctionReturn(0);
111779bdfe76SSatish Balay }
111879bdfe76SSatish Balay 
11195615d1e5SSatish Balay #undef __FUNC__
11205615d1e5SSatish Balay #define __FUNC__ "MatMult_MPIBAIJ"
1121ec1ea8d8SLois Curfman McInnes int MatMult_MPIBAIJ(Mat A,Vec xx,Vec yy)
1122cee3aa6bSSatish Balay {
1123cee3aa6bSSatish Balay   Mat_MPIBAIJ *a = (Mat_MPIBAIJ *) A->data;
112447b4a8eaSLois Curfman McInnes   int         ierr, nt;
1125cee3aa6bSSatish Balay 
1126d64ed03dSBarry Smith   PetscFunctionBegin;
1127e1311b90SBarry Smith   ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr);
112847b4a8eaSLois Curfman McInnes   if (nt != a->n) {
1129a8c6a408SBarry Smith     SETERRQ(PETSC_ERR_ARG_SIZ,0,"Incompatible partition of A and xx");
113047b4a8eaSLois Curfman McInnes   }
1131e1311b90SBarry Smith   ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr);
113247b4a8eaSLois Curfman McInnes   if (nt != a->m) {
1133a8c6a408SBarry Smith     SETERRQ(PETSC_ERR_ARG_SIZ,0,"Incompatible parition of A and yy");
113447b4a8eaSLois Curfman McInnes   }
113543a90d84SBarry Smith   ierr = VecScatterBegin(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr);
1136f830108cSBarry Smith   ierr = (*a->A->ops->mult)(a->A,xx,yy);CHKERRQ(ierr);
113743a90d84SBarry Smith   ierr = VecScatterEnd(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr);
1138f830108cSBarry Smith   ierr = (*a->B->ops->multadd)(a->B,a->lvec,yy,yy);CHKERRQ(ierr);
113943a90d84SBarry Smith   ierr = VecScatterPostRecvs(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr);
11403a40ed3dSBarry Smith   PetscFunctionReturn(0);
1141cee3aa6bSSatish Balay }
1142cee3aa6bSSatish Balay 
11435615d1e5SSatish Balay #undef __FUNC__
11445615d1e5SSatish Balay #define __FUNC__ "MatMultAdd_MPIBAIJ"
1145ec1ea8d8SLois Curfman McInnes int MatMultAdd_MPIBAIJ(Mat A,Vec xx,Vec yy,Vec zz)
1146cee3aa6bSSatish Balay {
1147cee3aa6bSSatish Balay   Mat_MPIBAIJ *a = (Mat_MPIBAIJ *) A->data;
1148cee3aa6bSSatish Balay   int        ierr;
1149d64ed03dSBarry Smith 
1150d64ed03dSBarry Smith   PetscFunctionBegin;
115143a90d84SBarry Smith   ierr = VecScatterBegin(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr);
1152f830108cSBarry Smith   ierr = (*a->A->ops->multadd)(a->A,xx,yy,zz);CHKERRQ(ierr);
115343a90d84SBarry Smith   ierr = VecScatterEnd(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr);
1154f830108cSBarry Smith   ierr = (*a->B->ops->multadd)(a->B,a->lvec,zz,zz);CHKERRQ(ierr);
11553a40ed3dSBarry Smith   PetscFunctionReturn(0);
1156cee3aa6bSSatish Balay }
1157cee3aa6bSSatish Balay 
11585615d1e5SSatish Balay #undef __FUNC__
11595615d1e5SSatish Balay #define __FUNC__ "MatMultTrans_MPIBAIJ"
1160ec1ea8d8SLois Curfman McInnes int MatMultTrans_MPIBAIJ(Mat A,Vec xx,Vec yy)
1161cee3aa6bSSatish Balay {
1162cee3aa6bSSatish Balay   Mat_MPIBAIJ *a = (Mat_MPIBAIJ *) A->data;
1163cee3aa6bSSatish Balay   int         ierr;
1164cee3aa6bSSatish Balay 
1165d64ed03dSBarry Smith   PetscFunctionBegin;
1166cee3aa6bSSatish Balay   /* do nondiagonal part */
1167f830108cSBarry Smith   ierr = (*a->B->ops->multtrans)(a->B,xx,a->lvec);CHKERRQ(ierr);
1168cee3aa6bSSatish Balay   /* send it on its way */
1169537820f0SBarry Smith   ierr = VecScatterBegin(a->lvec,yy,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr);
1170cee3aa6bSSatish Balay   /* do local part */
1171f830108cSBarry Smith   ierr = (*a->A->ops->multtrans)(a->A,xx,yy);CHKERRQ(ierr);
1172cee3aa6bSSatish Balay   /* receive remote parts: note this assumes the values are not actually */
1173cee3aa6bSSatish Balay   /* inserted in yy until the next line, which is true for my implementation*/
1174cee3aa6bSSatish Balay   /* but is not perhaps always true. */
1175639f9d9dSBarry Smith   ierr = VecScatterEnd(a->lvec,yy,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr);
11763a40ed3dSBarry Smith   PetscFunctionReturn(0);
1177cee3aa6bSSatish Balay }
1178cee3aa6bSSatish Balay 
11795615d1e5SSatish Balay #undef __FUNC__
11805615d1e5SSatish Balay #define __FUNC__ "MatMultTransAdd_MPIBAIJ"
1181ec1ea8d8SLois Curfman McInnes int MatMultTransAdd_MPIBAIJ(Mat A,Vec xx,Vec yy,Vec zz)
1182cee3aa6bSSatish Balay {
1183cee3aa6bSSatish Balay   Mat_MPIBAIJ *a = (Mat_MPIBAIJ *) A->data;
1184cee3aa6bSSatish Balay   int         ierr;
1185cee3aa6bSSatish Balay 
1186d64ed03dSBarry Smith   PetscFunctionBegin;
1187cee3aa6bSSatish Balay   /* do nondiagonal part */
1188f830108cSBarry Smith   ierr = (*a->B->ops->multtrans)(a->B,xx,a->lvec);CHKERRQ(ierr);
1189cee3aa6bSSatish Balay   /* send it on its way */
1190537820f0SBarry Smith   ierr = VecScatterBegin(a->lvec,zz,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr);
1191cee3aa6bSSatish Balay   /* do local part */
1192f830108cSBarry Smith   ierr = (*a->A->ops->multtransadd)(a->A,xx,yy,zz);CHKERRQ(ierr);
1193cee3aa6bSSatish Balay   /* receive remote parts: note this assumes the values are not actually */
1194cee3aa6bSSatish Balay   /* inserted in yy until the next line, which is true for my implementation*/
1195cee3aa6bSSatish Balay   /* but is not perhaps always true. */
1196537820f0SBarry Smith   ierr = VecScatterEnd(a->lvec,zz,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr);
11973a40ed3dSBarry Smith   PetscFunctionReturn(0);
1198cee3aa6bSSatish Balay }
1199cee3aa6bSSatish Balay 
1200cee3aa6bSSatish Balay /*
1201cee3aa6bSSatish Balay   This only works correctly for square matrices where the subblock A->A is the
1202cee3aa6bSSatish Balay    diagonal block
1203cee3aa6bSSatish Balay */
12045615d1e5SSatish Balay #undef __FUNC__
12055615d1e5SSatish Balay #define __FUNC__ "MatGetDiagonal_MPIBAIJ"
1206ec1ea8d8SLois Curfman McInnes int MatGetDiagonal_MPIBAIJ(Mat A,Vec v)
1207cee3aa6bSSatish Balay {
1208cee3aa6bSSatish Balay   Mat_MPIBAIJ *a = (Mat_MPIBAIJ *) A->data;
12093a40ed3dSBarry Smith   int         ierr;
1210d64ed03dSBarry Smith 
1211d64ed03dSBarry Smith   PetscFunctionBegin;
1212a8c6a408SBarry Smith   if (a->M != a->N) SETERRQ(PETSC_ERR_SUP,0,"Supports only square matrix where A->A is diag block");
12133a40ed3dSBarry Smith   ierr = MatGetDiagonal(a->A,v);CHKERRQ(ierr);
12143a40ed3dSBarry Smith   PetscFunctionReturn(0);
1215cee3aa6bSSatish Balay }
1216cee3aa6bSSatish Balay 
12175615d1e5SSatish Balay #undef __FUNC__
12185615d1e5SSatish Balay #define __FUNC__ "MatScale_MPIBAIJ"
1219ec1ea8d8SLois Curfman McInnes int MatScale_MPIBAIJ(Scalar *aa,Mat A)
1220cee3aa6bSSatish Balay {
1221cee3aa6bSSatish Balay   Mat_MPIBAIJ *a = (Mat_MPIBAIJ *) A->data;
1222cee3aa6bSSatish Balay   int         ierr;
1223d64ed03dSBarry Smith 
1224d64ed03dSBarry Smith   PetscFunctionBegin;
1225cee3aa6bSSatish Balay   ierr = MatScale(aa,a->A);CHKERRQ(ierr);
1226cee3aa6bSSatish Balay   ierr = MatScale(aa,a->B);CHKERRQ(ierr);
12273a40ed3dSBarry Smith   PetscFunctionReturn(0);
1228cee3aa6bSSatish Balay }
1229026e39d0SSatish Balay 
12305615d1e5SSatish Balay #undef __FUNC__
12315615d1e5SSatish Balay #define __FUNC__ "MatGetSize_MPIBAIJ"
1232ec1ea8d8SLois Curfman McInnes int MatGetSize_MPIBAIJ(Mat matin,int *m,int *n)
123357b952d6SSatish Balay {
123457b952d6SSatish Balay   Mat_MPIBAIJ *mat = (Mat_MPIBAIJ *) matin->data;
1235d64ed03dSBarry Smith 
1236d64ed03dSBarry Smith   PetscFunctionBegin;
1237bd7f49f5SSatish Balay   if (m) *m = mat->M;
1238bd7f49f5SSatish Balay   if (n) *n = mat->N;
12393a40ed3dSBarry Smith   PetscFunctionReturn(0);
124057b952d6SSatish Balay }
124157b952d6SSatish Balay 
12425615d1e5SSatish Balay #undef __FUNC__
12435615d1e5SSatish Balay #define __FUNC__ "MatGetLocalSize_MPIBAIJ"
1244ec1ea8d8SLois Curfman McInnes int MatGetLocalSize_MPIBAIJ(Mat matin,int *m,int *n)
124557b952d6SSatish Balay {
124657b952d6SSatish Balay   Mat_MPIBAIJ *mat = (Mat_MPIBAIJ *) matin->data;
1247d64ed03dSBarry Smith 
1248d64ed03dSBarry Smith   PetscFunctionBegin;
1249f830108cSBarry Smith   *m = mat->m; *n = mat->n;
12503a40ed3dSBarry Smith   PetscFunctionReturn(0);
125157b952d6SSatish Balay }
125257b952d6SSatish Balay 
12535615d1e5SSatish Balay #undef __FUNC__
12545615d1e5SSatish Balay #define __FUNC__ "MatGetOwnershipRange_MPIBAIJ"
1255ec1ea8d8SLois Curfman McInnes int MatGetOwnershipRange_MPIBAIJ(Mat matin,int *m,int *n)
125657b952d6SSatish Balay {
125757b952d6SSatish Balay   Mat_MPIBAIJ *mat = (Mat_MPIBAIJ *) matin->data;
1258d64ed03dSBarry Smith 
1259d64ed03dSBarry Smith   PetscFunctionBegin;
126057b952d6SSatish Balay   *m = mat->rstart*mat->bs; *n = mat->rend*mat->bs;
12613a40ed3dSBarry Smith   PetscFunctionReturn(0);
126257b952d6SSatish Balay }
126357b952d6SSatish Balay 
12645615d1e5SSatish Balay #undef __FUNC__
12655615d1e5SSatish Balay #define __FUNC__ "MatGetRow_MPIBAIJ"
1266acdf5bf4SSatish Balay int MatGetRow_MPIBAIJ(Mat matin,int row,int *nz,int **idx,Scalar **v)
1267acdf5bf4SSatish Balay {
1268acdf5bf4SSatish Balay   Mat_MPIBAIJ *mat = (Mat_MPIBAIJ *) matin->data;
1269acdf5bf4SSatish Balay   Scalar     *vworkA, *vworkB, **pvA, **pvB,*v_p;
1270acdf5bf4SSatish Balay   int        bs = mat->bs, bs2 = mat->bs2, i, ierr, *cworkA, *cworkB, **pcA, **pcB;
1271d9d09a02SSatish Balay   int        nztot, nzA, nzB, lrow, brstart = mat->rstart*bs, brend = mat->rend*bs;
1272d9d09a02SSatish Balay   int        *cmap, *idx_p,cstart = mat->cstart;
1273acdf5bf4SSatish Balay 
1274d64ed03dSBarry Smith   PetscFunctionBegin;
1275a8c6a408SBarry Smith   if (mat->getrowactive == PETSC_TRUE) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,0,"Already active");
1276acdf5bf4SSatish Balay   mat->getrowactive = PETSC_TRUE;
1277acdf5bf4SSatish Balay 
1278acdf5bf4SSatish Balay   if (!mat->rowvalues && (idx || v)) {
1279acdf5bf4SSatish Balay     /*
1280acdf5bf4SSatish Balay         allocate enough space to hold information from the longest row.
1281acdf5bf4SSatish Balay     */
1282acdf5bf4SSatish Balay     Mat_SeqBAIJ *Aa = (Mat_SeqBAIJ *) mat->A->data,*Ba = (Mat_SeqBAIJ *) mat->B->data;
1283bd16c2feSSatish Balay     int     max = 1,mbs = mat->mbs,tmp;
1284bd16c2feSSatish Balay     for ( i=0; i<mbs; i++ ) {
1285acdf5bf4SSatish Balay       tmp = Aa->i[i+1] - Aa->i[i] + Ba->i[i+1] - Ba->i[i];
1286acdf5bf4SSatish Balay       if (max < tmp) { max = tmp; }
1287acdf5bf4SSatish Balay     }
1288549d3d68SSatish Balay     mat->rowvalues = (Scalar *) PetscMalloc( max*bs2*(sizeof(int)+sizeof(Scalar)));CHKPTRQ(mat->rowvalues);
1289acdf5bf4SSatish Balay     mat->rowindices = (int *) (mat->rowvalues + max*bs2);
1290acdf5bf4SSatish Balay   }
1291acdf5bf4SSatish Balay 
1292a8c6a408SBarry Smith   if (row < brstart || row >= brend) SETERRQ(PETSC_ERR_SUP,0,"Only local rows")
1293d9d09a02SSatish Balay   lrow = row - brstart;
1294acdf5bf4SSatish Balay 
1295acdf5bf4SSatish Balay   pvA = &vworkA; pcA = &cworkA; pvB = &vworkB; pcB = &cworkB;
1296acdf5bf4SSatish Balay   if (!v)   {pvA = 0; pvB = 0;}
1297acdf5bf4SSatish Balay   if (!idx) {pcA = 0; if (!v) pcB = 0;}
1298f830108cSBarry Smith   ierr = (*mat->A->ops->getrow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr);
1299f830108cSBarry Smith   ierr = (*mat->B->ops->getrow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr);
1300acdf5bf4SSatish Balay   nztot = nzA + nzB;
1301acdf5bf4SSatish Balay 
1302acdf5bf4SSatish Balay   cmap  = mat->garray;
1303acdf5bf4SSatish Balay   if (v  || idx) {
1304acdf5bf4SSatish Balay     if (nztot) {
1305acdf5bf4SSatish Balay       /* Sort by increasing column numbers, assuming A and B already sorted */
1306acdf5bf4SSatish Balay       int imark = -1;
1307acdf5bf4SSatish Balay       if (v) {
1308acdf5bf4SSatish Balay         *v = v_p = mat->rowvalues;
1309acdf5bf4SSatish Balay         for ( i=0; i<nzB; i++ ) {
1310d9d09a02SSatish Balay           if (cmap[cworkB[i]/bs] < cstart)   v_p[i] = vworkB[i];
1311acdf5bf4SSatish Balay           else break;
1312acdf5bf4SSatish Balay         }
1313acdf5bf4SSatish Balay         imark = i;
1314acdf5bf4SSatish Balay         for ( i=0; i<nzA; i++ )     v_p[imark+i] = vworkA[i];
1315acdf5bf4SSatish Balay         for ( i=imark; i<nzB; i++ ) v_p[nzA+i]   = vworkB[i];
1316acdf5bf4SSatish Balay       }
1317acdf5bf4SSatish Balay       if (idx) {
1318acdf5bf4SSatish Balay         *idx = idx_p = mat->rowindices;
1319acdf5bf4SSatish Balay         if (imark > -1) {
1320acdf5bf4SSatish Balay           for ( i=0; i<imark; i++ ) {
1321bd16c2feSSatish Balay             idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs;
1322acdf5bf4SSatish Balay           }
1323acdf5bf4SSatish Balay         } else {
1324acdf5bf4SSatish Balay           for ( i=0; i<nzB; i++ ) {
1325d9d09a02SSatish Balay             if (cmap[cworkB[i]/bs] < cstart)
1326d9d09a02SSatish Balay               idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ;
1327acdf5bf4SSatish Balay             else break;
1328acdf5bf4SSatish Balay           }
1329acdf5bf4SSatish Balay           imark = i;
1330acdf5bf4SSatish Balay         }
1331d9d09a02SSatish Balay         for ( i=0; i<nzA; i++ )     idx_p[imark+i] = cstart*bs + cworkA[i];
1332d9d09a02SSatish Balay         for ( i=imark; i<nzB; i++ ) idx_p[nzA+i]   = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ;
1333acdf5bf4SSatish Balay       }
1334d64ed03dSBarry Smith     } else {
1335d212a18eSSatish Balay       if (idx) *idx = 0;
1336d212a18eSSatish Balay       if (v)   *v   = 0;
1337d212a18eSSatish Balay     }
1338acdf5bf4SSatish Balay   }
1339acdf5bf4SSatish Balay   *nz = nztot;
1340f830108cSBarry Smith   ierr = (*mat->A->ops->restorerow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr);
1341f830108cSBarry Smith   ierr = (*mat->B->ops->restorerow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr);
13423a40ed3dSBarry Smith   PetscFunctionReturn(0);
1343acdf5bf4SSatish Balay }
1344acdf5bf4SSatish Balay 
13455615d1e5SSatish Balay #undef __FUNC__
13465615d1e5SSatish Balay #define __FUNC__ "MatRestoreRow_MPIBAIJ"
1347acdf5bf4SSatish Balay int MatRestoreRow_MPIBAIJ(Mat mat,int row,int *nz,int **idx,Scalar **v)
1348acdf5bf4SSatish Balay {
1349acdf5bf4SSatish Balay   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *) mat->data;
1350d64ed03dSBarry Smith 
1351d64ed03dSBarry Smith   PetscFunctionBegin;
1352acdf5bf4SSatish Balay   if (baij->getrowactive == PETSC_FALSE) {
1353a8c6a408SBarry Smith     SETERRQ(PETSC_ERR_ARG_WRONGSTATE,0,"MatGetRow not called");
1354acdf5bf4SSatish Balay   }
1355acdf5bf4SSatish Balay   baij->getrowactive = PETSC_FALSE;
13563a40ed3dSBarry Smith   PetscFunctionReturn(0);
1357acdf5bf4SSatish Balay }
1358acdf5bf4SSatish Balay 
13595615d1e5SSatish Balay #undef __FUNC__
13605615d1e5SSatish Balay #define __FUNC__ "MatGetBlockSize_MPIBAIJ"
1361ec1ea8d8SLois Curfman McInnes int MatGetBlockSize_MPIBAIJ(Mat mat,int *bs)
13625a838052SSatish Balay {
13635a838052SSatish Balay   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *) mat->data;
1364d64ed03dSBarry Smith 
1365d64ed03dSBarry Smith   PetscFunctionBegin;
13665a838052SSatish Balay   *bs = baij->bs;
13673a40ed3dSBarry Smith   PetscFunctionReturn(0);
13685a838052SSatish Balay }
13695a838052SSatish Balay 
13705615d1e5SSatish Balay #undef __FUNC__
13715615d1e5SSatish Balay #define __FUNC__ "MatZeroEntries_MPIBAIJ"
1372ec1ea8d8SLois Curfman McInnes int MatZeroEntries_MPIBAIJ(Mat A)
137358667388SSatish Balay {
137458667388SSatish Balay   Mat_MPIBAIJ *l = (Mat_MPIBAIJ *) A->data;
137558667388SSatish Balay   int         ierr;
1376d64ed03dSBarry Smith 
1377d64ed03dSBarry Smith   PetscFunctionBegin;
137858667388SSatish Balay   ierr = MatZeroEntries(l->A);CHKERRQ(ierr);
137958667388SSatish Balay   ierr = MatZeroEntries(l->B);CHKERRQ(ierr);
13803a40ed3dSBarry Smith   PetscFunctionReturn(0);
138158667388SSatish Balay }
13820ac07820SSatish Balay 
13835615d1e5SSatish Balay #undef __FUNC__
13845615d1e5SSatish Balay #define __FUNC__ "MatGetInfo_MPIBAIJ"
1385ec1ea8d8SLois Curfman McInnes int MatGetInfo_MPIBAIJ(Mat matin,MatInfoType flag,MatInfo *info)
13860ac07820SSatish Balay {
13874e220ebcSLois Curfman McInnes   Mat_MPIBAIJ *a = (Mat_MPIBAIJ *) matin->data;
13884e220ebcSLois Curfman McInnes   Mat         A = a->A, B = a->B;
13897d57db60SLois Curfman McInnes   int         ierr;
13907d57db60SLois Curfman McInnes   double      isend[5], irecv[5];
13910ac07820SSatish Balay 
1392d64ed03dSBarry Smith   PetscFunctionBegin;
13934e220ebcSLois Curfman McInnes   info->block_size     = (double)a->bs;
13944e220ebcSLois Curfman McInnes   ierr = MatGetInfo(A,MAT_LOCAL,info);CHKERRQ(ierr);
13950e4b21beSBarry Smith   isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded;
1396de87f314SBarry Smith   isend[3] = info->memory;  isend[4] = info->mallocs;
13974e220ebcSLois Curfman McInnes   ierr = MatGetInfo(B,MAT_LOCAL,info);CHKERRQ(ierr);
13980e4b21beSBarry Smith   isend[0] += info->nz_used; isend[1] += info->nz_allocated; isend[2] += info->nz_unneeded;
1399de87f314SBarry Smith   isend[3] += info->memory;  isend[4] += info->mallocs;
14000ac07820SSatish Balay   if (flag == MAT_LOCAL) {
14014e220ebcSLois Curfman McInnes     info->nz_used      = isend[0];
14024e220ebcSLois Curfman McInnes     info->nz_allocated = isend[1];
14034e220ebcSLois Curfman McInnes     info->nz_unneeded  = isend[2];
14044e220ebcSLois Curfman McInnes     info->memory       = isend[3];
14054e220ebcSLois Curfman McInnes     info->mallocs      = isend[4];
14060ac07820SSatish Balay   } else if (flag == MAT_GLOBAL_MAX) {
1407f7cdd7c9SBarry Smith     ierr = MPI_Allreduce(isend,irecv,5,MPI_DOUBLE,MPI_MAX,matin->comm);CHKERRQ(ierr);
14084e220ebcSLois Curfman McInnes     info->nz_used      = irecv[0];
14094e220ebcSLois Curfman McInnes     info->nz_allocated = irecv[1];
14104e220ebcSLois Curfman McInnes     info->nz_unneeded  = irecv[2];
14114e220ebcSLois Curfman McInnes     info->memory       = irecv[3];
14124e220ebcSLois Curfman McInnes     info->mallocs      = irecv[4];
14130ac07820SSatish Balay   } else if (flag == MAT_GLOBAL_SUM) {
1414f7cdd7c9SBarry Smith     ierr = MPI_Allreduce(isend,irecv,5,MPI_DOUBLE,MPI_SUM,matin->comm);CHKERRQ(ierr);
14154e220ebcSLois Curfman McInnes     info->nz_used      = irecv[0];
14164e220ebcSLois Curfman McInnes     info->nz_allocated = irecv[1];
14174e220ebcSLois Curfman McInnes     info->nz_unneeded  = irecv[2];
14184e220ebcSLois Curfman McInnes     info->memory       = irecv[3];
14194e220ebcSLois Curfman McInnes     info->mallocs      = irecv[4];
1420d41123aaSBarry Smith   } else {
1421d41123aaSBarry Smith     SETERRQ1(1,1,"Unknown MatInfoType argument %d",flag);
14220ac07820SSatish Balay   }
14235a5d4f66SBarry Smith   info->rows_global       = (double)a->M;
14245a5d4f66SBarry Smith   info->columns_global    = (double)a->N;
14255a5d4f66SBarry Smith   info->rows_local        = (double)a->m;
14265a5d4f66SBarry Smith   info->columns_local     = (double)a->N;
14274e220ebcSLois Curfman McInnes   info->fill_ratio_given  = 0; /* no parallel LU/ILU/Cholesky */
14284e220ebcSLois Curfman McInnes   info->fill_ratio_needed = 0;
14294e220ebcSLois Curfman McInnes   info->factor_mallocs    = 0;
14303a40ed3dSBarry Smith   PetscFunctionReturn(0);
14310ac07820SSatish Balay }
14320ac07820SSatish Balay 
14335615d1e5SSatish Balay #undef __FUNC__
14345615d1e5SSatish Balay #define __FUNC__ "MatSetOption_MPIBAIJ"
1435ec1ea8d8SLois Curfman McInnes int MatSetOption_MPIBAIJ(Mat A,MatOption op)
143658667388SSatish Balay {
143758667388SSatish Balay   Mat_MPIBAIJ *a = (Mat_MPIBAIJ *) A->data;
143898305bb5SBarry Smith   int         ierr;
143958667388SSatish Balay 
1440d64ed03dSBarry Smith   PetscFunctionBegin;
144158667388SSatish Balay   if (op == MAT_NO_NEW_NONZERO_LOCATIONS ||
144258667388SSatish Balay       op == MAT_YES_NEW_NONZERO_LOCATIONS ||
14436da5968aSLois Curfman McInnes       op == MAT_COLUMNS_UNSORTED ||
1444c2653b3dSLois Curfman McInnes       op == MAT_COLUMNS_SORTED ||
14454787f768SSatish Balay       op == MAT_NEW_NONZERO_ALLOCATION_ERR ||
14464787f768SSatish Balay       op == MAT_NEW_NONZERO_LOCATION_ERR) {
144798305bb5SBarry Smith         ierr = MatSetOption(a->A,op);CHKERRQ(ierr);
144898305bb5SBarry Smith         ierr = MatSetOption(a->B,op);CHKERRQ(ierr);
1449b1fbbac0SLois Curfman McInnes   } else if (op == MAT_ROW_ORIENTED) {
1450aeafbbfcSLois Curfman McInnes         a->roworiented = 1;
145198305bb5SBarry Smith         ierr = MatSetOption(a->A,op);CHKERRQ(ierr);
145298305bb5SBarry Smith         ierr = MatSetOption(a->B,op);CHKERRQ(ierr);
1453b1fbbac0SLois Curfman McInnes   } else if (op == MAT_ROWS_SORTED ||
14546da5968aSLois Curfman McInnes              op == MAT_ROWS_UNSORTED ||
145558667388SSatish Balay              op == MAT_SYMMETRIC ||
145658667388SSatish Balay              op == MAT_STRUCTURALLY_SYMMETRIC ||
1457b51ba29fSSatish Balay              op == MAT_YES_NEW_DIAGONALS ||
145898305bb5SBarry Smith              op == MAT_USE_HASH_TABLE) {
145958667388SSatish Balay     PLogInfo(A,"Info:MatSetOption_MPIBAIJ:Option ignored\n");
146098305bb5SBarry Smith   } else if (op == MAT_COLUMN_ORIENTED) {
146158667388SSatish Balay     a->roworiented = 0;
146298305bb5SBarry Smith     ierr = MatSetOption(a->A,op);CHKERRQ(ierr);
146398305bb5SBarry Smith     ierr = MatSetOption(a->B,op);CHKERRQ(ierr);
14642b362799SSatish Balay   } else if (op == MAT_IGNORE_OFF_PROC_ENTRIES) {
146590f02eecSBarry Smith     a->donotstash = 1;
1466d64ed03dSBarry Smith   } else if (op == MAT_NO_NEW_DIAGONALS) {
1467d64ed03dSBarry Smith     SETERRQ(PETSC_ERR_SUP,0,"MAT_NO_NEW_DIAGONALS");
1468133cdb44SSatish Balay   } else if (op == MAT_USE_HASH_TABLE) {
1469133cdb44SSatish Balay     a->ht_flag = 1;
1470d64ed03dSBarry Smith   } else {
1471d64ed03dSBarry Smith     SETERRQ(PETSC_ERR_SUP,0,"unknown option");
1472d64ed03dSBarry Smith   }
14733a40ed3dSBarry Smith   PetscFunctionReturn(0);
147458667388SSatish Balay }
147558667388SSatish Balay 
14765615d1e5SSatish Balay #undef __FUNC__
14775615d1e5SSatish Balay #define __FUNC__ "MatTranspose_MPIBAIJ("
1478ec1ea8d8SLois Curfman McInnes int MatTranspose_MPIBAIJ(Mat A,Mat *matout)
14790ac07820SSatish Balay {
14800ac07820SSatish Balay   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *) A->data;
14810ac07820SSatish Balay   Mat_SeqBAIJ *Aloc;
14820ac07820SSatish Balay   Mat        B;
148340011551SBarry Smith   int        ierr,M=baij->M,N=baij->N,*ai,*aj,i,*rvals,j,k,col;
14840ac07820SSatish Balay   int        bs=baij->bs,mbs=baij->mbs;
14850ac07820SSatish Balay   Scalar     *a;
14860ac07820SSatish Balay 
1487d64ed03dSBarry Smith   PetscFunctionBegin;
1488a8c6a408SBarry Smith   if (matout == PETSC_NULL && M != N) SETERRQ(PETSC_ERR_ARG_SIZ,0,"Square matrix only for in-place");
148928937c7bSBarry Smith   ierr = MatCreateMPIBAIJ(A->comm,baij->bs,baij->n,baij->m,N,M,0,PETSC_NULL,0,PETSC_NULL,&B);
14900ac07820SSatish Balay CHKERRQ(ierr);
14910ac07820SSatish Balay 
14920ac07820SSatish Balay   /* copy over the A part */
14930ac07820SSatish Balay   Aloc = (Mat_SeqBAIJ*) baij->A->data;
14940ac07820SSatish Balay   ai = Aloc->i; aj = Aloc->j; a = Aloc->a;
14950ac07820SSatish Balay   rvals = (int *) PetscMalloc(bs*sizeof(int));CHKPTRQ(rvals);
14960ac07820SSatish Balay 
14970ac07820SSatish Balay   for ( i=0; i<mbs; i++ ) {
14980ac07820SSatish Balay     rvals[0] = bs*(baij->rstart + i);
14990ac07820SSatish Balay     for ( j=1; j<bs; j++ ) { rvals[j] = rvals[j-1] + 1; }
15000ac07820SSatish Balay     for ( j=ai[i]; j<ai[i+1]; j++ ) {
15010ac07820SSatish Balay       col = (baij->cstart+aj[j])*bs;
15020ac07820SSatish Balay       for (k=0; k<bs; k++ ) {
15030ac07820SSatish Balay         ierr = MatSetValues(B,1,&col,bs,rvals,a,INSERT_VALUES);CHKERRQ(ierr);
15040ac07820SSatish Balay         col++; a += bs;
15050ac07820SSatish Balay       }
15060ac07820SSatish Balay     }
15070ac07820SSatish Balay   }
15080ac07820SSatish Balay   /* copy over the B part */
15090ac07820SSatish Balay   Aloc = (Mat_SeqBAIJ*) baij->B->data;
15100ac07820SSatish Balay   ai = Aloc->i; aj = Aloc->j; a = Aloc->a;
15110ac07820SSatish Balay   for ( i=0; i<mbs; i++ ) {
15120ac07820SSatish Balay     rvals[0] = bs*(baij->rstart + i);
15130ac07820SSatish Balay     for ( j=1; j<bs; j++ ) { rvals[j] = rvals[j-1] + 1; }
15140ac07820SSatish Balay     for ( j=ai[i]; j<ai[i+1]; j++ ) {
15150ac07820SSatish Balay       col = baij->garray[aj[j]]*bs;
15160ac07820SSatish Balay       for (k=0; k<bs; k++ ) {
15170ac07820SSatish Balay         ierr = MatSetValues(B,1,&col,bs,rvals,a,INSERT_VALUES);CHKERRQ(ierr);
15180ac07820SSatish Balay         col++; a += bs;
15190ac07820SSatish Balay       }
15200ac07820SSatish Balay     }
15210ac07820SSatish Balay   }
1522606d414cSSatish Balay   ierr = PetscFree(rvals);CHKERRQ(ierr);
15230ac07820SSatish Balay   ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
15240ac07820SSatish Balay   ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
15250ac07820SSatish Balay 
15260ac07820SSatish Balay   if (matout != PETSC_NULL) {
15270ac07820SSatish Balay     *matout = B;
15280ac07820SSatish Balay   } else {
1529f830108cSBarry Smith     PetscOps *Abops;
1530cc2dc46cSBarry Smith     MatOps   Aops;
1531f830108cSBarry Smith 
15320ac07820SSatish Balay     /* This isn't really an in-place transpose .... but free data structures from baij */
1533606d414cSSatish Balay     ierr = PetscFree(baij->rowners); CHKERRQ(ierr);
15340ac07820SSatish Balay     ierr = MatDestroy(baij->A);CHKERRQ(ierr);
15350ac07820SSatish Balay     ierr = MatDestroy(baij->B);CHKERRQ(ierr);
1536aa482453SBarry Smith #if defined (PETSC_USE_CTABLE)
1537606d414cSSatish Balay     if (baij->colmap) {ierr = TableDelete(baij->colmap);CHKERRQ(ierr);}
1538b1fc9764SSatish Balay #else
1539606d414cSSatish Balay     if (baij->colmap) {ierr = PetscFree(baij->colmap);CHKERRQ(ierr);}
1540b1fc9764SSatish Balay #endif
1541606d414cSSatish Balay     if (baij->garray) {ierr = PetscFree(baij->garray);CHKERRQ(ierr);}
1542606d414cSSatish Balay     if (baij->lvec) {ierr = VecDestroy(baij->lvec);CHKERRQ(ierr);}
1543606d414cSSatish Balay     if (baij->Mvctx) {ierr = VecScatterDestroy(baij->Mvctx);CHKERRQ(ierr);}
1544606d414cSSatish Balay     ierr = PetscFree(baij);CHKERRQ(ierr);
1545f830108cSBarry Smith 
1546f830108cSBarry Smith     /*
1547f830108cSBarry Smith        This is horrible, horrible code. We need to keep the
1548f830108cSBarry Smith       A pointers for the bops and ops but copy everything
1549f830108cSBarry Smith       else from C.
1550f830108cSBarry Smith     */
1551f830108cSBarry Smith     Abops   = A->bops;
1552f830108cSBarry Smith     Aops    = A->ops;
1553549d3d68SSatish Balay     ierr    = PetscMemcpy(A,B,sizeof(struct _p_Mat));CHKERRQ(ierr);
1554f830108cSBarry Smith     A->bops = Abops;
1555f830108cSBarry Smith     A->ops  = Aops;
1556f830108cSBarry Smith 
15570ac07820SSatish Balay     PetscHeaderDestroy(B);
15580ac07820SSatish Balay   }
15593a40ed3dSBarry Smith   PetscFunctionReturn(0);
15600ac07820SSatish Balay }
15610e95ebc0SSatish Balay 
15625615d1e5SSatish Balay #undef __FUNC__
15635615d1e5SSatish Balay #define __FUNC__ "MatDiagonalScale_MPIBAIJ"
15640e95ebc0SSatish Balay int MatDiagonalScale_MPIBAIJ(Mat A,Vec ll,Vec rr)
15650e95ebc0SSatish Balay {
15660e95ebc0SSatish Balay   Mat a = ((Mat_MPIBAIJ *) A->data)->A;
15670e95ebc0SSatish Balay   Mat b = ((Mat_MPIBAIJ *) A->data)->B;
15680e95ebc0SSatish Balay   int ierr,s1,s2,s3;
15690e95ebc0SSatish Balay 
1570d64ed03dSBarry Smith   PetscFunctionBegin;
15710e95ebc0SSatish Balay   if (ll)  {
15720e95ebc0SSatish Balay     ierr = VecGetLocalSize(ll,&s1);CHKERRQ(ierr);
15730e95ebc0SSatish Balay     ierr = MatGetLocalSize(A,&s2,&s3);CHKERRQ(ierr);
1574a8c6a408SBarry Smith     if (s1!=s2) SETERRQ(PETSC_ERR_ARG_SIZ,0,"non-conforming local sizes");
15750e95ebc0SSatish Balay     ierr = MatDiagonalScale(a,ll,0);CHKERRQ(ierr);
15760e95ebc0SSatish Balay     ierr = MatDiagonalScale(b,ll,0);CHKERRQ(ierr);
15770e95ebc0SSatish Balay   }
1578a8c6a408SBarry Smith   if (rr) SETERRQ(PETSC_ERR_SUP,0,"not supported for right vector");
15793a40ed3dSBarry Smith   PetscFunctionReturn(0);
15800e95ebc0SSatish Balay }
15810e95ebc0SSatish Balay 
15825615d1e5SSatish Balay #undef __FUNC__
15835615d1e5SSatish Balay #define __FUNC__ "MatZeroRows_MPIBAIJ"
1584ec1ea8d8SLois Curfman McInnes int MatZeroRows_MPIBAIJ(Mat A,IS is,Scalar *diag)
15850ac07820SSatish Balay {
15860ac07820SSatish Balay   Mat_MPIBAIJ    *l = (Mat_MPIBAIJ *) A->data;
15870ac07820SSatish Balay   int            i,ierr,N, *rows,*owners = l->rowners,size = l->size;
1588a07cd24cSSatish Balay   int            *procs,*nprocs,j,found,idx,nsends,*work,row;
15890ac07820SSatish Balay   int            nmax,*svalues,*starts,*owner,nrecvs,rank = l->rank;
15900ac07820SSatish Balay   int            *rvalues,tag = A->tag,count,base,slen,n,*source;
1591a07cd24cSSatish Balay   int            *lens,imdex,*lrows,*values,bs=l->bs,rstart_bs=l->rstart_bs;
15920ac07820SSatish Balay   MPI_Comm       comm = A->comm;
15930ac07820SSatish Balay   MPI_Request    *send_waits,*recv_waits;
15940ac07820SSatish Balay   MPI_Status     recv_status,*send_status;
15950ac07820SSatish Balay   IS             istmp;
15960ac07820SSatish Balay 
1597d64ed03dSBarry Smith   PetscFunctionBegin;
15980ac07820SSatish Balay   ierr = ISGetSize(is,&N);CHKERRQ(ierr);
15990ac07820SSatish Balay   ierr = ISGetIndices(is,&rows);CHKERRQ(ierr);
16000ac07820SSatish Balay 
16010ac07820SSatish Balay   /*  first count number of contributors to each processor */
16020ac07820SSatish Balay   nprocs = (int *) PetscMalloc( 2*size*sizeof(int) );CHKPTRQ(nprocs);
1603549d3d68SSatish Balay   ierr   = PetscMemzero(nprocs,2*size*sizeof(int));CHKERRQ(ierr);
1604549d3d68SSatish Balay  procs   = nprocs + size;
16050ac07820SSatish Balay   owner  = (int *) PetscMalloc((N+1)*sizeof(int));CHKPTRQ(owner); /* see note*/
16060ac07820SSatish Balay   for ( i=0; i<N; i++ ) {
16070ac07820SSatish Balay     idx = rows[i];
16080ac07820SSatish Balay     found = 0;
16090ac07820SSatish Balay     for ( j=0; j<size; j++ ) {
16100ac07820SSatish Balay       if (idx >= owners[j]*bs && idx < owners[j+1]*bs) {
16110ac07820SSatish Balay         nprocs[j]++; procs[j] = 1; owner[i] = j; found = 1; break;
16120ac07820SSatish Balay       }
16130ac07820SSatish Balay     }
1614a8c6a408SBarry Smith     if (!found) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Index out of range");
16150ac07820SSatish Balay   }
16160ac07820SSatish Balay   nsends = 0;  for ( i=0; i<size; i++ ) { nsends += procs[i];}
16170ac07820SSatish Balay 
16180ac07820SSatish Balay   /* inform other processors of number of messages and max length*/
16190ac07820SSatish Balay   work   = (int *) PetscMalloc( size*sizeof(int) );CHKPTRQ(work);
1620ca161407SBarry Smith   ierr   = MPI_Allreduce( procs, work,size,MPI_INT,MPI_SUM,comm);CHKERRQ(ierr);
16210ac07820SSatish Balay   nrecvs = work[rank];
1622ca161407SBarry Smith   ierr   = MPI_Allreduce( nprocs, work,size,MPI_INT,MPI_MAX,comm);CHKERRQ(ierr);
16230ac07820SSatish Balay   nmax   = work[rank];
1624606d414cSSatish Balay   ierr = PetscFree(work);CHKERRQ(ierr);
16250ac07820SSatish Balay 
16260ac07820SSatish Balay   /* post receives:   */
1627d64ed03dSBarry Smith   rvalues = (int *) PetscMalloc((nrecvs+1)*(nmax+1)*sizeof(int));CHKPTRQ(rvalues);
1628d64ed03dSBarry Smith   recv_waits = (MPI_Request *) PetscMalloc((nrecvs+1)*sizeof(MPI_Request));CHKPTRQ(recv_waits);
16290ac07820SSatish Balay   for ( i=0; i<nrecvs; i++ ) {
1630ca161407SBarry Smith     ierr = MPI_Irecv(rvalues+nmax*i,nmax,MPI_INT,MPI_ANY_SOURCE,tag,comm,recv_waits+i);CHKERRQ(ierr);
16310ac07820SSatish Balay   }
16320ac07820SSatish Balay 
16330ac07820SSatish Balay   /* do sends:
16340ac07820SSatish Balay      1) starts[i] gives the starting index in svalues for stuff going to
16350ac07820SSatish Balay      the ith processor
16360ac07820SSatish Balay   */
16370ac07820SSatish Balay   svalues = (int *) PetscMalloc( (N+1)*sizeof(int) );CHKPTRQ(svalues);
1638ca161407SBarry Smith   send_waits = (MPI_Request *) PetscMalloc( (nsends+1)*sizeof(MPI_Request));CHKPTRQ(send_waits);
16390ac07820SSatish Balay   starts = (int *) PetscMalloc( (size+1)*sizeof(int) );CHKPTRQ(starts);
16400ac07820SSatish Balay   starts[0] = 0;
16410ac07820SSatish Balay   for ( i=1; i<size; i++ ) { starts[i] = starts[i-1] + nprocs[i-1];}
16420ac07820SSatish Balay   for ( i=0; i<N; i++ ) {
16430ac07820SSatish Balay     svalues[starts[owner[i]]++] = rows[i];
16440ac07820SSatish Balay   }
16450ac07820SSatish Balay   ISRestoreIndices(is,&rows);
16460ac07820SSatish Balay 
16470ac07820SSatish Balay   starts[0] = 0;
16480ac07820SSatish Balay   for ( i=1; i<size+1; i++ ) { starts[i] = starts[i-1] + nprocs[i-1];}
16490ac07820SSatish Balay   count = 0;
16500ac07820SSatish Balay   for ( i=0; i<size; i++ ) {
16510ac07820SSatish Balay     if (procs[i]) {
1652ca161407SBarry Smith       ierr = MPI_Isend(svalues+starts[i],nprocs[i],MPI_INT,i,tag,comm,send_waits+count++);CHKERRQ(ierr);
16530ac07820SSatish Balay     }
16540ac07820SSatish Balay   }
1655606d414cSSatish Balay   ierr = PetscFree(starts);CHKERRQ(ierr);
16560ac07820SSatish Balay 
16570ac07820SSatish Balay   base = owners[rank]*bs;
16580ac07820SSatish Balay 
16590ac07820SSatish Balay   /*  wait on receives */
16600ac07820SSatish Balay   lens   = (int *) PetscMalloc( 2*(nrecvs+1)*sizeof(int) );CHKPTRQ(lens);
16610ac07820SSatish Balay   source = lens + nrecvs;
16620ac07820SSatish Balay   count  = nrecvs; slen = 0;
16630ac07820SSatish Balay   while (count) {
1664ca161407SBarry Smith     ierr = MPI_Waitany(nrecvs,recv_waits,&imdex,&recv_status);CHKERRQ(ierr);
16650ac07820SSatish Balay     /* unpack receives into our local space */
1666ca161407SBarry Smith     ierr = MPI_Get_count(&recv_status,MPI_INT,&n);CHKERRQ(ierr);
16670ac07820SSatish Balay     source[imdex]  = recv_status.MPI_SOURCE;
16680ac07820SSatish Balay     lens[imdex]  = n;
16690ac07820SSatish Balay     slen += n;
16700ac07820SSatish Balay     count--;
16710ac07820SSatish Balay   }
1672606d414cSSatish Balay   ierr = PetscFree(recv_waits); CHKERRQ(ierr);
16730ac07820SSatish Balay 
16740ac07820SSatish Balay   /* move the data into the send scatter */
16750ac07820SSatish Balay   lrows = (int *) PetscMalloc( (slen+1)*sizeof(int) );CHKPTRQ(lrows);
16760ac07820SSatish Balay   count = 0;
16770ac07820SSatish Balay   for ( i=0; i<nrecvs; i++ ) {
16780ac07820SSatish Balay     values = rvalues + i*nmax;
16790ac07820SSatish Balay     for ( j=0; j<lens[i]; j++ ) {
16800ac07820SSatish Balay       lrows[count++] = values[j] - base;
16810ac07820SSatish Balay     }
16820ac07820SSatish Balay   }
1683606d414cSSatish Balay   ierr = PetscFree(rvalues);CHKERRQ(ierr);
1684606d414cSSatish Balay   ierr = PetscFree(lens);CHKERRQ(ierr);
1685606d414cSSatish Balay   ierr = PetscFree(owner);CHKERRQ(ierr);
1686606d414cSSatish Balay   ierr = PetscFree(nprocs);CHKERRQ(ierr);
16870ac07820SSatish Balay 
16880ac07820SSatish Balay   /* actually zap the local rows */
1689029af93fSBarry Smith   ierr = ISCreateGeneral(PETSC_COMM_SELF,slen,lrows,&istmp);CHKERRQ(ierr);
16900ac07820SSatish Balay   PLogObjectParent(A,istmp);
1691a07cd24cSSatish Balay 
169272dacd9aSBarry Smith   /*
169372dacd9aSBarry Smith         Zero the required rows. If the "diagonal block" of the matrix
169472dacd9aSBarry Smith      is square and the user wishes to set the diagonal we use seperate
169572dacd9aSBarry Smith      code so that MatSetValues() is not called for each diagonal allocating
169672dacd9aSBarry Smith      new memory, thus calling lots of mallocs and slowing things down.
169772dacd9aSBarry Smith 
169872dacd9aSBarry Smith        Contributed by: Mathew Knepley
169972dacd9aSBarry Smith   */
17009c957beeSSatish Balay   /* must zero l->B before l->A because the (diag) case below may put values into l->B*/
17010ac07820SSatish Balay   ierr = MatZeroRows(l->B,istmp,0);CHKERRQ(ierr);
17029c957beeSSatish Balay   if (diag && (l->A->M == l->A->N)) {
17039c957beeSSatish Balay     ierr      = MatZeroRows(l->A,istmp,diag);CHKERRQ(ierr);
17049c957beeSSatish Balay   } else if (diag) {
17059c957beeSSatish Balay     ierr = MatZeroRows(l->A,istmp,0);CHKERRQ(ierr);
1706fa46199cSSatish Balay     if (((Mat_SeqBAIJ*)l->A->data)->nonew) {
1707fa46199cSSatish Balay       SETERRQ(PETSC_ERR_SUP,0,"MatZeroRows() on rectangular matrices cannot be used with the Mat options \n\
1708fa46199cSSatish Balay MAT_NO_NEW_NONZERO_LOCATIONS,MAT_NEW_NONZERO_LOCATION_ERR,MAT_NEW_NONZERO_ALLOCATION_ERR");
17096525c446SSatish Balay     }
1710a07cd24cSSatish Balay     for ( i = 0; i < slen; i++ ) {
1711a07cd24cSSatish Balay       row  = lrows[i] + rstart_bs;
1712a07cd24cSSatish Balay       ierr = MatSetValues(A,1,&row,1,&row,diag,INSERT_VALUES);CHKERRQ(ierr);
1713a07cd24cSSatish Balay     }
1714a07cd24cSSatish Balay     ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
1715a07cd24cSSatish Balay     ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
17169c957beeSSatish Balay   } else {
17179c957beeSSatish Balay     ierr = MatZeroRows(l->A,istmp,0);CHKERRQ(ierr);
1718a07cd24cSSatish Balay   }
17199c957beeSSatish Balay 
17209c957beeSSatish Balay   ierr = ISDestroy(istmp);CHKERRQ(ierr);
1721606d414cSSatish Balay   ierr = PetscFree(lrows);CHKERRQ(ierr);
1722a07cd24cSSatish Balay 
17230ac07820SSatish Balay   /* wait on sends */
17240ac07820SSatish Balay   if (nsends) {
1725d64ed03dSBarry Smith     send_status = (MPI_Status *) PetscMalloc(nsends*sizeof(MPI_Status));CHKPTRQ(send_status);
1726ca161407SBarry Smith     ierr        = MPI_Waitall(nsends,send_waits,send_status);CHKERRQ(ierr);
1727606d414cSSatish Balay     ierr = PetscFree(send_status);CHKERRQ(ierr);
17280ac07820SSatish Balay   }
1729606d414cSSatish Balay   ierr = PetscFree(send_waits);CHKERRQ(ierr);
1730606d414cSSatish Balay   ierr = PetscFree(svalues);CHKERRQ(ierr);
17310ac07820SSatish Balay 
17323a40ed3dSBarry Smith   PetscFunctionReturn(0);
17330ac07820SSatish Balay }
173472dacd9aSBarry Smith 
17355615d1e5SSatish Balay #undef __FUNC__
17365615d1e5SSatish Balay #define __FUNC__ "MatPrintHelp_MPIBAIJ"
1737ec1ea8d8SLois Curfman McInnes int MatPrintHelp_MPIBAIJ(Mat A)
1738ba4ca20aSSatish Balay {
1739ba4ca20aSSatish Balay   Mat_MPIBAIJ *a   = (Mat_MPIBAIJ*) A->data;
174025fdafccSSatish Balay   MPI_Comm    comm = A->comm;
1741133cdb44SSatish Balay   static int  called = 0;
17423a40ed3dSBarry Smith   int         ierr;
1743ba4ca20aSSatish Balay 
1744d64ed03dSBarry Smith   PetscFunctionBegin;
17453a40ed3dSBarry Smith   if (!a->rank) {
17463a40ed3dSBarry Smith     ierr = MatPrintHelp_SeqBAIJ(a->A);CHKERRQ(ierr);
174725fdafccSSatish Balay   }
174825fdafccSSatish Balay   if (called) {PetscFunctionReturn(0);} else called = 1;
1749d132466eSBarry Smith   ierr = (*PetscHelpPrintf)(comm," Options for MATMPIBAIJ matrix format (the defaults):\n");CHKERRQ(ierr);
1750d132466eSBarry Smith   ierr = (*PetscHelpPrintf)(comm,"  -mat_use_hash_table <factor>: Use hashtable for efficient matrix assembly\n");CHKERRQ(ierr);
17513a40ed3dSBarry Smith   PetscFunctionReturn(0);
1752ba4ca20aSSatish Balay }
17530ac07820SSatish Balay 
17545615d1e5SSatish Balay #undef __FUNC__
17555615d1e5SSatish Balay #define __FUNC__ "MatSetUnfactored_MPIBAIJ"
1756ec1ea8d8SLois Curfman McInnes int MatSetUnfactored_MPIBAIJ(Mat A)
1757bb5a7306SBarry Smith {
1758bb5a7306SBarry Smith   Mat_MPIBAIJ *a   = (Mat_MPIBAIJ*) A->data;
1759bb5a7306SBarry Smith   int         ierr;
1760d64ed03dSBarry Smith 
1761d64ed03dSBarry Smith   PetscFunctionBegin;
1762bb5a7306SBarry Smith   ierr = MatSetUnfactored(a->A);CHKERRQ(ierr);
17633a40ed3dSBarry Smith   PetscFunctionReturn(0);
1764bb5a7306SBarry Smith }
1765bb5a7306SBarry Smith 
17662e8a6d31SBarry Smith static int MatDuplicate_MPIBAIJ(Mat,MatDuplicateOption,Mat *);
17670ac07820SSatish Balay 
17687fc3c18eSBarry Smith #undef __FUNC__
17697fc3c18eSBarry Smith #define __FUNC__ "MatEqual_MPIBAIJ"
17707fc3c18eSBarry Smith int MatEqual_MPIBAIJ(Mat A, Mat B, PetscTruth *flag)
17717fc3c18eSBarry Smith {
17727fc3c18eSBarry Smith   Mat_MPIBAIJ *matB = (Mat_MPIBAIJ *) B->data,*matA = (Mat_MPIBAIJ *) A->data;
17737fc3c18eSBarry Smith   Mat         a, b, c, d;
17747fc3c18eSBarry Smith   PetscTruth  flg;
17757fc3c18eSBarry Smith   int         ierr;
17767fc3c18eSBarry Smith 
17777fc3c18eSBarry Smith   PetscFunctionBegin;
17787fc3c18eSBarry Smith   if (B->type != MATMPIBAIJ) SETERRQ(PETSC_ERR_ARG_INCOMP,0,"Matrices must be same type");
17797fc3c18eSBarry Smith   a = matA->A; b = matA->B;
17807fc3c18eSBarry Smith   c = matB->A; d = matB->B;
17817fc3c18eSBarry Smith 
17827fc3c18eSBarry Smith   ierr = MatEqual(a, c, &flg);CHKERRQ(ierr);
17837fc3c18eSBarry Smith   if (flg == PETSC_TRUE) {
17847fc3c18eSBarry Smith     ierr = MatEqual(b, d, &flg);CHKERRQ(ierr);
17857fc3c18eSBarry Smith   }
17867fc3c18eSBarry Smith   ierr = MPI_Allreduce(&flg, flag, 1, MPI_INT, MPI_LAND, A->comm);CHKERRQ(ierr);
17877fc3c18eSBarry Smith   PetscFunctionReturn(0);
17887fc3c18eSBarry Smith }
17897fc3c18eSBarry Smith 
179079bdfe76SSatish Balay /* -------------------------------------------------------------------*/
1791cc2dc46cSBarry Smith static struct _MatOps MatOps_Values = {
1792cc2dc46cSBarry Smith   MatSetValues_MPIBAIJ,
1793cc2dc46cSBarry Smith   MatGetRow_MPIBAIJ,
1794cc2dc46cSBarry Smith   MatRestoreRow_MPIBAIJ,
1795cc2dc46cSBarry Smith   MatMult_MPIBAIJ,
1796cc2dc46cSBarry Smith   MatMultAdd_MPIBAIJ,
1797cc2dc46cSBarry Smith   MatMultTrans_MPIBAIJ,
1798cc2dc46cSBarry Smith   MatMultTransAdd_MPIBAIJ,
1799cc2dc46cSBarry Smith   0,
1800cc2dc46cSBarry Smith   0,
1801cc2dc46cSBarry Smith   0,
1802cc2dc46cSBarry Smith   0,
1803cc2dc46cSBarry Smith   0,
1804cc2dc46cSBarry Smith   0,
1805cc2dc46cSBarry Smith   0,
1806cc2dc46cSBarry Smith   MatTranspose_MPIBAIJ,
1807cc2dc46cSBarry Smith   MatGetInfo_MPIBAIJ,
18087fc3c18eSBarry Smith   MatEqual_MPIBAIJ,
1809cc2dc46cSBarry Smith   MatGetDiagonal_MPIBAIJ,
1810cc2dc46cSBarry Smith   MatDiagonalScale_MPIBAIJ,
1811cc2dc46cSBarry Smith   MatNorm_MPIBAIJ,
1812cc2dc46cSBarry Smith   MatAssemblyBegin_MPIBAIJ,
1813cc2dc46cSBarry Smith   MatAssemblyEnd_MPIBAIJ,
1814cc2dc46cSBarry Smith   0,
1815cc2dc46cSBarry Smith   MatSetOption_MPIBAIJ,
1816cc2dc46cSBarry Smith   MatZeroEntries_MPIBAIJ,
1817cc2dc46cSBarry Smith   MatZeroRows_MPIBAIJ,
1818cc2dc46cSBarry Smith   0,
1819cc2dc46cSBarry Smith   0,
1820cc2dc46cSBarry Smith   0,
1821cc2dc46cSBarry Smith   0,
1822cc2dc46cSBarry Smith   MatGetSize_MPIBAIJ,
1823cc2dc46cSBarry Smith   MatGetLocalSize_MPIBAIJ,
1824cc2dc46cSBarry Smith   MatGetOwnershipRange_MPIBAIJ,
1825cc2dc46cSBarry Smith   0,
1826cc2dc46cSBarry Smith   0,
1827cc2dc46cSBarry Smith   0,
1828cc2dc46cSBarry Smith   0,
18292e8a6d31SBarry Smith   MatDuplicate_MPIBAIJ,
1830cc2dc46cSBarry Smith   0,
1831cc2dc46cSBarry Smith   0,
1832cc2dc46cSBarry Smith   0,
1833cc2dc46cSBarry Smith   0,
1834cc2dc46cSBarry Smith   0,
1835cc2dc46cSBarry Smith   MatGetSubMatrices_MPIBAIJ,
1836cc2dc46cSBarry Smith   MatIncreaseOverlap_MPIBAIJ,
1837cc2dc46cSBarry Smith   MatGetValues_MPIBAIJ,
1838cc2dc46cSBarry Smith   0,
1839cc2dc46cSBarry Smith   MatPrintHelp_MPIBAIJ,
1840cc2dc46cSBarry Smith   MatScale_MPIBAIJ,
1841cc2dc46cSBarry Smith   0,
1842cc2dc46cSBarry Smith   0,
1843cc2dc46cSBarry Smith   0,
1844cc2dc46cSBarry Smith   MatGetBlockSize_MPIBAIJ,
1845cc2dc46cSBarry Smith   0,
1846cc2dc46cSBarry Smith   0,
1847cc2dc46cSBarry Smith   0,
1848cc2dc46cSBarry Smith   0,
1849cc2dc46cSBarry Smith   0,
1850cc2dc46cSBarry Smith   0,
1851cc2dc46cSBarry Smith   MatSetUnfactored_MPIBAIJ,
1852cc2dc46cSBarry Smith   0,
1853cc2dc46cSBarry Smith   MatSetValuesBlocked_MPIBAIJ,
1854cc2dc46cSBarry Smith   0,
1855cc2dc46cSBarry Smith   0,
1856cc2dc46cSBarry Smith   0,
1857cc2dc46cSBarry Smith   MatGetMaps_Petsc};
185879bdfe76SSatish Balay 
18595ef9f2a5SBarry Smith 
1860e18c124aSSatish Balay EXTERN_C_BEGIN
18615ef9f2a5SBarry Smith #undef __FUNC__
18625ef9f2a5SBarry Smith #define __FUNC__ "MatGetDiagonalBlock_MPIBAIJ"
18635ef9f2a5SBarry Smith int MatGetDiagonalBlock_MPIBAIJ(Mat A,PetscTruth *iscopy,MatReuse reuse,Mat *a)
18645ef9f2a5SBarry Smith {
18655ef9f2a5SBarry Smith   PetscFunctionBegin;
18665ef9f2a5SBarry Smith   *a      = ((Mat_MPIBAIJ *)A->data)->A;
18675ef9f2a5SBarry Smith   *iscopy = PETSC_FALSE;
18685ef9f2a5SBarry Smith   PetscFunctionReturn(0);
18695ef9f2a5SBarry Smith }
1870e18c124aSSatish Balay EXTERN_C_END
187179bdfe76SSatish Balay 
18725615d1e5SSatish Balay #undef __FUNC__
18735615d1e5SSatish Balay #define __FUNC__ "MatCreateMPIBAIJ"
187479bdfe76SSatish Balay /*@C
187579bdfe76SSatish Balay    MatCreateMPIBAIJ - Creates a sparse parallel matrix in block AIJ format
187679bdfe76SSatish Balay    (block compressed row).  For good matrix assembly performance
187779bdfe76SSatish Balay    the user should preallocate the matrix storage by setting the parameters
187879bdfe76SSatish Balay    d_nz (or d_nnz) and o_nz (or o_nnz).  By setting these parameters accurately,
187979bdfe76SSatish Balay    performance can be increased by more than a factor of 50.
188079bdfe76SSatish Balay 
1881db81eaa0SLois Curfman McInnes    Collective on MPI_Comm
1882db81eaa0SLois Curfman McInnes 
188379bdfe76SSatish Balay    Input Parameters:
1884db81eaa0SLois Curfman McInnes +  comm - MPI communicator
188579bdfe76SSatish Balay .  bs   - size of blockk
188679bdfe76SSatish Balay .  m - number of local rows (or PETSC_DECIDE to have calculated if M is given)
188792e8d321SLois Curfman McInnes            This value should be the same as the local size used in creating the
188892e8d321SLois Curfman McInnes            y vector for the matrix-vector product y = Ax.
188992e8d321SLois Curfman McInnes .  n - number of local columns (or PETSC_DECIDE to have calculated if N is given)
189092e8d321SLois Curfman McInnes            This value should be the same as the local size used in creating the
189192e8d321SLois Curfman McInnes            x vector for the matrix-vector product y = Ax.
1892be79a94dSBarry Smith .  M - number of global rows (or PETSC_DETERMINE to have calculated if m is given)
1893be79a94dSBarry Smith .  N - number of global columns (or PETSC_DETERMINE to have calculated if n is given)
189479bdfe76SSatish Balay .  d_nz  - number of block nonzeros per block row in diagonal portion of local
189579bdfe76SSatish Balay            submatrix  (same for all local rows)
18967fc3c18eSBarry Smith .  d_nnz - array containing the number of block nonzeros in the various block rows
189792e8d321SLois Curfman McInnes            of the in diagonal portion of the local (possibly different for each block
1898db81eaa0SLois Curfman McInnes            row) or PETSC_NULL.  You must leave room for the diagonal entry even if it is zero.
189992e8d321SLois Curfman McInnes .  o_nz  - number of block nonzeros per block row in the off-diagonal portion of local
190079bdfe76SSatish Balay            submatrix (same for all local rows).
19017fc3c18eSBarry Smith -  o_nnz - array containing the number of nonzeros in the various block rows of the
190292e8d321SLois Curfman McInnes            off-diagonal portion of the local submatrix (possibly different for
190392e8d321SLois Curfman McInnes            each block row) or PETSC_NULL.
190479bdfe76SSatish Balay 
190579bdfe76SSatish Balay    Output Parameter:
190679bdfe76SSatish Balay .  A - the matrix
190779bdfe76SSatish Balay 
1908db81eaa0SLois Curfman McInnes    Options Database Keys:
1909db81eaa0SLois Curfman McInnes .   -mat_no_unroll - uses code that does not unroll the loops in the
1910db81eaa0SLois Curfman McInnes                      block calculations (much slower)
1911db81eaa0SLois Curfman McInnes .   -mat_block_size - size of the blocks to use
1912494eafd4SBarry Smith .   -mat_mpi - use the parallel matrix data structures even on one processor
1913494eafd4SBarry Smith                (defaults to using SeqBAIJ format on one processor)
19143ffaccefSLois Curfman McInnes 
1915b259b22eSLois Curfman McInnes    Notes:
191679bdfe76SSatish Balay    The user MUST specify either the local or global matrix dimensions
191779bdfe76SSatish Balay    (possibly both).
191879bdfe76SSatish Balay 
1919be79a94dSBarry Smith    If PETSC_DECIDE or  PETSC_DETERMINE is used for a particular argument on one processor
1920be79a94dSBarry Smith    than it must be used on all processors that share the object for that argument.
1921be79a94dSBarry Smith 
192279bdfe76SSatish Balay    Storage Information:
192379bdfe76SSatish Balay    For a square global matrix we define each processor's diagonal portion
192479bdfe76SSatish Balay    to be its local rows and the corresponding columns (a square submatrix);
192579bdfe76SSatish Balay    each processor's off-diagonal portion encompasses the remainder of the
192679bdfe76SSatish Balay    local matrix (a rectangular submatrix).
192779bdfe76SSatish Balay 
192879bdfe76SSatish Balay    The user can specify preallocated storage for the diagonal part of
192979bdfe76SSatish Balay    the local submatrix with either d_nz or d_nnz (not both).  Set
193079bdfe76SSatish Balay    d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic
193179bdfe76SSatish Balay    memory allocation.  Likewise, specify preallocated storage for the
193279bdfe76SSatish Balay    off-diagonal part of the local submatrix with o_nz or o_nnz (not both).
193379bdfe76SSatish Balay 
193479bdfe76SSatish Balay    Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
193579bdfe76SSatish Balay    the figure below we depict these three local rows and all columns (0-11).
193679bdfe76SSatish Balay 
1937db81eaa0SLois Curfman McInnes .vb
1938db81eaa0SLois Curfman McInnes            0 1 2 3 4 5 6 7 8 9 10 11
1939db81eaa0SLois Curfman McInnes           -------------------
1940db81eaa0SLois Curfman McInnes    row 3  |  o o o d d d o o o o o o
1941db81eaa0SLois Curfman McInnes    row 4  |  o o o d d d o o o o o o
1942db81eaa0SLois Curfman McInnes    row 5  |  o o o d d d o o o o o o
1943db81eaa0SLois Curfman McInnes           -------------------
1944db81eaa0SLois Curfman McInnes .ve
194579bdfe76SSatish Balay 
194679bdfe76SSatish Balay    Thus, any entries in the d locations are stored in the d (diagonal)
194779bdfe76SSatish Balay    submatrix, and any entries in the o locations are stored in the
194879bdfe76SSatish Balay    o (off-diagonal) submatrix.  Note that the d and the o submatrices are
194957b952d6SSatish Balay    stored simply in the MATSEQBAIJ format for compressed row storage.
195079bdfe76SSatish Balay 
1951d64ed03dSBarry Smith    Now d_nz should indicate the number of block nonzeros per row in the d matrix,
1952d64ed03dSBarry Smith    and o_nz should indicate the number of block nonzeros per row in the o matrix.
195379bdfe76SSatish Balay    In general, for PDE problems in which most nonzeros are near the diagonal,
195492e8d321SLois Curfman McInnes    one expects d_nz >> o_nz.   For large problems you MUST preallocate memory
195592e8d321SLois Curfman McInnes    or you will get TERRIBLE performance; see the users' manual chapter on
19566da5968aSLois Curfman McInnes    matrices.
195779bdfe76SSatish Balay 
1958027ccd11SLois Curfman McInnes    Level: intermediate
1959027ccd11SLois Curfman McInnes 
196092e8d321SLois Curfman McInnes .keywords: matrix, block, aij, compressed row, sparse, parallel
196179bdfe76SSatish Balay 
1962db81eaa0SLois Curfman McInnes .seealso: MatCreate(), MatCreateSeqBAIJ(), MatSetValues(), MatCreateMPIAIJ()
196379bdfe76SSatish Balay @*/
196479bdfe76SSatish Balay int MatCreateMPIBAIJ(MPI_Comm comm,int bs,int m,int n,int M,int N,
196579bdfe76SSatish Balay                     int d_nz,int *d_nnz,int o_nz,int *o_nnz,Mat *A)
196679bdfe76SSatish Balay {
196779bdfe76SSatish Balay   Mat          B;
196879bdfe76SSatish Balay   Mat_MPIBAIJ  *b;
1969133cdb44SSatish Balay   int          ierr, i,sum[2],work[2],mbs,nbs,Mbs=PETSC_DECIDE,Nbs=PETSC_DECIDE,size,flg;
1970a2ab621fSBarry Smith   int          flag1 = 0,flag2 = 0;
197179bdfe76SSatish Balay 
1972d64ed03dSBarry Smith   PetscFunctionBegin;
1973962fb4a0SBarry Smith   ierr = OptionsGetInt(PETSC_NULL,"-mat_block_size",&bs,PETSC_NULL);CHKERRQ(ierr);
1974962fb4a0SBarry Smith 
1975a8c6a408SBarry Smith   if (bs < 1) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Invalid block size specified, must be positive");
1976*4fdb0a08SBarry Smith   if (d_nz < -1) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,0,"d_nz cannot be less than -1: value %d",d_nz);
1977*4fdb0a08SBarry Smith   if (o_nz < -1) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,0,"o_nz cannot be less than -1: value %d",o_nz);
1978*4fdb0a08SBarry Smith   if (d_nnz) {
1979*4fdb0a08SBarry Smith     for (i=0; i<m; i++) {
1980*4fdb0a08SBarry Smith       if (d_nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,0,"d_nnz cannot be less than -1: local row %d value %d",i,d_nnz[i]);
1981*4fdb0a08SBarry Smith     }
1982*4fdb0a08SBarry Smith   }
1983*4fdb0a08SBarry Smith   if (o_nnz) {
1984*4fdb0a08SBarry Smith     for (i=0; i<m; i++) {
1985*4fdb0a08SBarry Smith       if (o_nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,0,"o_nnz cannot be less than -1: local row %d value %d",i,o_nnz[i]);
1986*4fdb0a08SBarry Smith     }
1987*4fdb0a08SBarry Smith   }
19883914022bSBarry Smith 
1989d132466eSBarry Smith   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
1990494eafd4SBarry Smith   ierr = OptionsHasName(PETSC_NULL,"-mat_mpibaij",&flag1);CHKERRQ(ierr);
1991494eafd4SBarry Smith   ierr = OptionsHasName(PETSC_NULL,"-mat_mpi",&flag2);CHKERRQ(ierr);
1992494eafd4SBarry Smith   if (!flag1 && !flag2 && size == 1) {
19933914022bSBarry Smith     if (M == PETSC_DECIDE) M = m;
19943914022bSBarry Smith     if (N == PETSC_DECIDE) N = n;
19953914022bSBarry Smith     ierr = MatCreateSeqBAIJ(comm,bs,M,N,d_nz,d_nnz,A);CHKERRQ(ierr);
19963a40ed3dSBarry Smith     PetscFunctionReturn(0);
19973914022bSBarry Smith   }
19983914022bSBarry Smith 
199979bdfe76SSatish Balay   *A = 0;
20003f1db9ecSBarry Smith   PetscHeaderCreate(B,_p_Mat,struct _MatOps,MAT_COOKIE,MATMPIBAIJ,"Mat",comm,MatDestroy,MatView);
200179bdfe76SSatish Balay   PLogObjectCreate(B);
200279bdfe76SSatish Balay   B->data = (void *) (b = PetscNew(Mat_MPIBAIJ));CHKPTRQ(b);
2003549d3d68SSatish Balay   ierr    = PetscMemzero(b,sizeof(Mat_MPIBAIJ));CHKERRQ(ierr);
2004549d3d68SSatish Balay   ierr    = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr);
20054c50302cSBarry Smith 
2006e1311b90SBarry Smith   B->ops->destroy    = MatDestroy_MPIBAIJ;
2007e1311b90SBarry Smith   B->ops->view       = MatView_MPIBAIJ;
200890f02eecSBarry Smith   B->mapping    = 0;
200979bdfe76SSatish Balay   B->factor     = 0;
201079bdfe76SSatish Balay   B->assembled  = PETSC_FALSE;
201179bdfe76SSatish Balay 
2012e0fa3b82SLois Curfman McInnes   B->insertmode = NOT_SET_VALUES;
2013d132466eSBarry Smith   ierr = MPI_Comm_rank(comm,&b->rank);CHKERRQ(ierr);
2014d132466eSBarry Smith   ierr = MPI_Comm_size(comm,&b->size);CHKERRQ(ierr);
201579bdfe76SSatish Balay 
2016d64ed03dSBarry Smith   if ( m == PETSC_DECIDE && (d_nnz != PETSC_NULL || o_nnz != PETSC_NULL)) {
2017a8c6a408SBarry Smith     SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Cannot have PETSC_DECIDE rows but set d_nnz or o_nnz");
2018d64ed03dSBarry Smith   }
2019a8c6a408SBarry Smith   if ( M == PETSC_DECIDE && m == PETSC_DECIDE) {
2020a8c6a408SBarry Smith     SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"either M or m should be specified");
2021a8c6a408SBarry Smith   }
2022a8c6a408SBarry Smith   if ( N == PETSC_DECIDE && n == PETSC_DECIDE) {
2023a8c6a408SBarry Smith     SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"either N or n should be specified");
2024a8c6a408SBarry Smith   }
2025cee3aa6bSSatish Balay   if ( M != PETSC_DECIDE && m != PETSC_DECIDE) M = PETSC_DECIDE;
2026cee3aa6bSSatish Balay   if ( N != PETSC_DECIDE && n != PETSC_DECIDE) N = PETSC_DECIDE;
202779bdfe76SSatish Balay 
202879bdfe76SSatish Balay   if (M == PETSC_DECIDE || N == PETSC_DECIDE) {
202979bdfe76SSatish Balay     work[0] = m; work[1] = n;
203079bdfe76SSatish Balay     mbs = m/bs; nbs = n/bs;
2031ca161407SBarry Smith     ierr = MPI_Allreduce( work, sum,2,MPI_INT,MPI_SUM,comm );CHKERRQ(ierr);
203279bdfe76SSatish Balay     if (M == PETSC_DECIDE) {M = sum[0]; Mbs = M/bs;}
203379bdfe76SSatish Balay     if (N == PETSC_DECIDE) {N = sum[1]; Nbs = N/bs;}
203479bdfe76SSatish Balay   }
203579bdfe76SSatish Balay   if (m == PETSC_DECIDE) {
203679bdfe76SSatish Balay     Mbs = M/bs;
2037a8c6a408SBarry Smith     if (Mbs*bs != M) SETERRQ(PETSC_ERR_ARG_SIZ,0,"No of global rows must be divisible by blocksize");
203879bdfe76SSatish Balay     mbs = Mbs/b->size + ((Mbs % b->size) > b->rank);
203979bdfe76SSatish Balay     m   = mbs*bs;
204079bdfe76SSatish Balay   }
204179bdfe76SSatish Balay   if (n == PETSC_DECIDE) {
204279bdfe76SSatish Balay     Nbs = N/bs;
2043a8c6a408SBarry Smith     if (Nbs*bs != N) SETERRQ(PETSC_ERR_ARG_SIZ,0,"No of global cols must be divisible by blocksize");
204479bdfe76SSatish Balay     nbs = Nbs/b->size + ((Nbs % b->size) > b->rank);
204579bdfe76SSatish Balay     n   = nbs*bs;
204679bdfe76SSatish Balay   }
2047a8c6a408SBarry Smith   if (mbs*bs != m || nbs*bs != n) {
2048a8c6a408SBarry Smith     SETERRQ(PETSC_ERR_ARG_SIZ,0,"No of local rows, cols must be divisible by blocksize");
2049a8c6a408SBarry Smith   }
205079bdfe76SSatish Balay 
205179bdfe76SSatish Balay   b->m = m; B->m = m;
205279bdfe76SSatish Balay   b->n = n; B->n = n;
205379bdfe76SSatish Balay   b->N = N; B->N = N;
205479bdfe76SSatish Balay   b->M = M; B->M = M;
205579bdfe76SSatish Balay   b->bs  = bs;
205679bdfe76SSatish Balay   b->bs2 = bs*bs;
205779bdfe76SSatish Balay   b->mbs = mbs;
205879bdfe76SSatish Balay   b->nbs = nbs;
205979bdfe76SSatish Balay   b->Mbs = Mbs;
206079bdfe76SSatish Balay   b->Nbs = Nbs;
206179bdfe76SSatish Balay 
2062c7fcc2eaSBarry Smith   /* the information in the maps duplicates the information computed below, eventually
2063c7fcc2eaSBarry Smith      we should remove the duplicate information that is not contained in the maps */
2064488ecbafSBarry Smith   ierr = MapCreateMPI(comm,m,M,&B->rmap);CHKERRQ(ierr);
2065488ecbafSBarry Smith   ierr = MapCreateMPI(comm,n,N,&B->cmap);CHKERRQ(ierr);
2066c7fcc2eaSBarry Smith 
206779bdfe76SSatish Balay   /* build local table of row and column ownerships */
2068ff2fd236SBarry Smith   b->rowners = (int *) PetscMalloc(3*(b->size+2)*sizeof(int));CHKPTRQ(b->rowners);
2069ff2fd236SBarry Smith   PLogObjectMemory(B,3*(b->size+2)*sizeof(int)+sizeof(struct _p_Mat)+sizeof(Mat_MPIBAIJ));
20700ac07820SSatish Balay   b->cowners    = b->rowners + b->size + 2;
2071ff2fd236SBarry Smith   b->rowners_bs = b->cowners + b->size + 2;
2072ca161407SBarry Smith   ierr = MPI_Allgather(&mbs,1,MPI_INT,b->rowners+1,1,MPI_INT,comm);CHKERRQ(ierr);
207379bdfe76SSatish Balay   b->rowners[0]    = 0;
207479bdfe76SSatish Balay   for ( i=2; i<=b->size; i++ ) {
207579bdfe76SSatish Balay     b->rowners[i] += b->rowners[i-1];
207679bdfe76SSatish Balay   }
2077ff2fd236SBarry Smith   for ( i=0; i<=b->size; i++ ) {
2078ff2fd236SBarry Smith     b->rowners_bs[i] = b->rowners[i]*bs;
2079ff2fd236SBarry Smith   }
208079bdfe76SSatish Balay   b->rstart    = b->rowners[b->rank];
208179bdfe76SSatish Balay   b->rend      = b->rowners[b->rank+1];
20824fa0d573SSatish Balay   b->rstart_bs = b->rstart * bs;
20834fa0d573SSatish Balay   b->rend_bs   = b->rend * bs;
20844fa0d573SSatish Balay 
2085ca161407SBarry Smith   ierr = MPI_Allgather(&nbs,1,MPI_INT,b->cowners+1,1,MPI_INT,comm);CHKERRQ(ierr);
208679bdfe76SSatish Balay   b->cowners[0] = 0;
208779bdfe76SSatish Balay   for ( i=2; i<=b->size; i++ ) {
208879bdfe76SSatish Balay     b->cowners[i] += b->cowners[i-1];
208979bdfe76SSatish Balay   }
209079bdfe76SSatish Balay   b->cstart    = b->cowners[b->rank];
209179bdfe76SSatish Balay   b->cend      = b->cowners[b->rank+1];
20924fa0d573SSatish Balay   b->cstart_bs = b->cstart * bs;
20934fa0d573SSatish Balay   b->cend_bs   = b->cend * bs;
209479bdfe76SSatish Balay 
2095a07cd24cSSatish Balay 
209679bdfe76SSatish Balay   if (d_nz == PETSC_DEFAULT) d_nz = 5;
2097029af93fSBarry Smith   ierr = MatCreateSeqBAIJ(PETSC_COMM_SELF,bs,m,n,d_nz,d_nnz,&b->A);CHKERRQ(ierr);
209879bdfe76SSatish Balay   PLogObjectParent(B,b->A);
209979bdfe76SSatish Balay   if (o_nz == PETSC_DEFAULT) o_nz = 0;
2100029af93fSBarry Smith   ierr = MatCreateSeqBAIJ(PETSC_COMM_SELF,bs,m,N,o_nz,o_nnz,&b->B);CHKERRQ(ierr);
210179bdfe76SSatish Balay   PLogObjectParent(B,b->B);
210279bdfe76SSatish Balay 
210379bdfe76SSatish Balay   /* build cache for off array entries formed */
21048798bf22SSatish Balay   ierr = MatStashCreate_Private(comm,1,&B->stash);CHKERRQ(ierr);
21058798bf22SSatish Balay   ierr = MatStashCreate_Private(comm,bs,&B->bstash);CHKERRQ(ierr);
210690f02eecSBarry Smith   b->donotstash  = 0;
210779bdfe76SSatish Balay   b->colmap      = 0;
210879bdfe76SSatish Balay   b->garray      = 0;
210979bdfe76SSatish Balay   b->roworiented = 1;
211079bdfe76SSatish Balay 
211130793edcSSatish Balay   /* stuff used in block assembly */
211230793edcSSatish Balay   b->barray       = 0;
211330793edcSSatish Balay 
211479bdfe76SSatish Balay   /* stuff used for matrix vector multiply */
211579bdfe76SSatish Balay   b->lvec         = 0;
211679bdfe76SSatish Balay   b->Mvctx        = 0;
211779bdfe76SSatish Balay 
211879bdfe76SSatish Balay   /* stuff for MatGetRow() */
211979bdfe76SSatish Balay   b->rowindices   = 0;
212079bdfe76SSatish Balay   b->rowvalues    = 0;
212179bdfe76SSatish Balay   b->getrowactive = PETSC_FALSE;
212279bdfe76SSatish Balay 
2123a07cd24cSSatish Balay   /* hash table stuff */
2124a07cd24cSSatish Balay   b->ht           = 0;
2125187ce0cbSSatish Balay   b->hd           = 0;
21260bdbc534SSatish Balay   b->ht_size      = 0;
2127133cdb44SSatish Balay   b->ht_flag      = 0;
212825fdafccSSatish Balay   b->ht_fact      = 0;
2129187ce0cbSSatish Balay   b->ht_total_ct  = 0;
2130187ce0cbSSatish Balay   b->ht_insert_ct = 0;
2131a07cd24cSSatish Balay 
213279bdfe76SSatish Balay   *A = B;
2133133cdb44SSatish Balay   ierr = OptionsHasName(PETSC_NULL,"-mat_use_hash_table",&flg);CHKERRQ(ierr);
2134133cdb44SSatish Balay   if (flg) {
2135133cdb44SSatish Balay     double fact = 1.39;
2136133cdb44SSatish Balay     ierr = MatSetOption(B,MAT_USE_HASH_TABLE);CHKERRQ(ierr);
2137133cdb44SSatish Balay     ierr = OptionsGetDouble(PETSC_NULL,"-mat_use_hash_table",&fact,&flg);CHKERRQ(ierr);
2138133cdb44SSatish Balay     if (fact <= 1.0) fact = 1.39;
2139133cdb44SSatish Balay     ierr = MatMPIBAIJSetHashTableFactor(B,fact);CHKERRQ(ierr);
2140133cdb44SSatish Balay     PLogInfo(0,"MatCreateMPIBAIJ:Hash table Factor used %5.2f\n",fact);
2141133cdb44SSatish Balay   }
21427fc3c18eSBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatStoreValues_C",
21437fc3c18eSBarry Smith                                      "MatStoreValues_MPIBAIJ",
21447fc3c18eSBarry Smith                                      (void*)MatStoreValues_MPIBAIJ);CHKERRQ(ierr);
21457fc3c18eSBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatRetrieveValues_C",
21467fc3c18eSBarry Smith                                      "MatRetrieveValues_MPIBAIJ",
21477fc3c18eSBarry Smith                                      (void*)MatRetrieveValues_MPIBAIJ);CHKERRQ(ierr);
21485ef9f2a5SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatGetDiagonalBlock_C",
21495ef9f2a5SBarry Smith                                      "MatGetDiagonalBlock_MPIBAIJ",
21505ef9f2a5SBarry Smith                                      (void*)MatGetDiagonalBlock_MPIBAIJ);CHKERRQ(ierr);
21513a40ed3dSBarry Smith   PetscFunctionReturn(0);
215279bdfe76SSatish Balay }
2153026e39d0SSatish Balay 
21545615d1e5SSatish Balay #undef __FUNC__
21552e8a6d31SBarry Smith #define __FUNC__ "MatDuplicate_MPIBAIJ"
21562e8a6d31SBarry Smith static int MatDuplicate_MPIBAIJ(Mat matin,MatDuplicateOption cpvalues,Mat *newmat)
21570ac07820SSatish Balay {
21580ac07820SSatish Balay   Mat         mat;
21590ac07820SSatish Balay   Mat_MPIBAIJ *a,*oldmat = (Mat_MPIBAIJ *) matin->data;
21600ac07820SSatish Balay   int         ierr, len=0, flg;
21610ac07820SSatish Balay 
2162d64ed03dSBarry Smith   PetscFunctionBegin;
21630ac07820SSatish Balay   *newmat       = 0;
21643f1db9ecSBarry Smith   PetscHeaderCreate(mat,_p_Mat,struct _MatOps,MAT_COOKIE,MATMPIBAIJ,"Mat",matin->comm,MatDestroy,MatView);
21650ac07820SSatish Balay   PLogObjectCreate(mat);
21660ac07820SSatish Balay   mat->data         = (void *) (a = PetscNew(Mat_MPIBAIJ));CHKPTRQ(a);
2167549d3d68SSatish Balay   ierr              = PetscMemcpy(mat->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr);
2168e1311b90SBarry Smith   mat->ops->destroy = MatDestroy_MPIBAIJ;
2169e1311b90SBarry Smith   mat->ops->view    = MatView_MPIBAIJ;
21700ac07820SSatish Balay   mat->factor       = matin->factor;
21710ac07820SSatish Balay   mat->assembled    = PETSC_TRUE;
2172aef5e8e0SSatish Balay   mat->insertmode   = NOT_SET_VALUES;
21730ac07820SSatish Balay 
21740ac07820SSatish Balay   a->m = mat->m   = oldmat->m;
21750ac07820SSatish Balay   a->n = mat->n   = oldmat->n;
21760ac07820SSatish Balay   a->M = mat->M   = oldmat->M;
21770ac07820SSatish Balay   a->N = mat->N   = oldmat->N;
21780ac07820SSatish Balay 
21790ac07820SSatish Balay   a->bs  = oldmat->bs;
21800ac07820SSatish Balay   a->bs2 = oldmat->bs2;
21810ac07820SSatish Balay   a->mbs = oldmat->mbs;
21820ac07820SSatish Balay   a->nbs = oldmat->nbs;
21830ac07820SSatish Balay   a->Mbs = oldmat->Mbs;
21840ac07820SSatish Balay   a->Nbs = oldmat->Nbs;
21850ac07820SSatish Balay 
21860ac07820SSatish Balay   a->rstart       = oldmat->rstart;
21870ac07820SSatish Balay   a->rend         = oldmat->rend;
21880ac07820SSatish Balay   a->cstart       = oldmat->cstart;
21890ac07820SSatish Balay   a->cend         = oldmat->cend;
21900ac07820SSatish Balay   a->size         = oldmat->size;
21910ac07820SSatish Balay   a->rank         = oldmat->rank;
2192aef5e8e0SSatish Balay   a->donotstash   = oldmat->donotstash;
2193aef5e8e0SSatish Balay   a->roworiented  = oldmat->roworiented;
2194aef5e8e0SSatish Balay   a->rowindices   = 0;
21950ac07820SSatish Balay   a->rowvalues    = 0;
21960ac07820SSatish Balay   a->getrowactive = PETSC_FALSE;
219730793edcSSatish Balay   a->barray       = 0;
21983123a43fSSatish Balay   a->rstart_bs    = oldmat->rstart_bs;
21993123a43fSSatish Balay   a->rend_bs      = oldmat->rend_bs;
22003123a43fSSatish Balay   a->cstart_bs    = oldmat->cstart_bs;
22013123a43fSSatish Balay   a->cend_bs      = oldmat->cend_bs;
22020ac07820SSatish Balay 
2203133cdb44SSatish Balay   /* hash table stuff */
2204133cdb44SSatish Balay   a->ht           = 0;
2205133cdb44SSatish Balay   a->hd           = 0;
2206133cdb44SSatish Balay   a->ht_size      = 0;
2207133cdb44SSatish Balay   a->ht_flag      = oldmat->ht_flag;
220825fdafccSSatish Balay   a->ht_fact      = oldmat->ht_fact;
2209133cdb44SSatish Balay   a->ht_total_ct  = 0;
2210133cdb44SSatish Balay   a->ht_insert_ct = 0;
2211133cdb44SSatish Balay 
2212133cdb44SSatish Balay 
2213ff2fd236SBarry Smith   a->rowners = (int *) PetscMalloc(3*(a->size+2)*sizeof(int));CHKPTRQ(a->rowners);
2214ff2fd236SBarry Smith   PLogObjectMemory(mat,3*(a->size+2)*sizeof(int)+sizeof(struct _p_Mat)+sizeof(Mat_MPIBAIJ));
22150ac07820SSatish Balay   a->cowners    = a->rowners + a->size + 2;
2216ff2fd236SBarry Smith   a->rowners_bs = a->cowners + a->size + 2;
2217549d3d68SSatish Balay   ierr = PetscMemcpy(a->rowners,oldmat->rowners,3*(a->size+2)*sizeof(int));CHKERRQ(ierr);
22188798bf22SSatish Balay   ierr = MatStashCreate_Private(matin->comm,1,&mat->stash);CHKERRQ(ierr);
22198798bf22SSatish Balay   ierr = MatStashCreate_Private(matin->comm,oldmat->bs,&mat->bstash);CHKERRQ(ierr);
22200ac07820SSatish Balay   if (oldmat->colmap) {
2221aa482453SBarry Smith #if defined (PETSC_USE_CTABLE)
2222fa46199cSSatish Balay   ierr = TableCreateCopy(oldmat->colmap,&a->colmap);CHKERRQ(ierr);
222348e59246SSatish Balay #else
22240ac07820SSatish Balay     a->colmap = (int *) PetscMalloc((a->Nbs)*sizeof(int));CHKPTRQ(a->colmap);
22250ac07820SSatish Balay     PLogObjectMemory(mat,(a->Nbs)*sizeof(int));
2226549d3d68SSatish Balay     ierr      = PetscMemcpy(a->colmap,oldmat->colmap,(a->Nbs)*sizeof(int));CHKERRQ(ierr);
222748e59246SSatish Balay #endif
22280ac07820SSatish Balay   } else a->colmap = 0;
22290ac07820SSatish Balay   if (oldmat->garray && (len = ((Mat_SeqBAIJ *) (oldmat->B->data))->nbs)) {
22300ac07820SSatish Balay     a->garray = (int *) PetscMalloc(len*sizeof(int));CHKPTRQ(a->garray);
22310ac07820SSatish Balay     PLogObjectMemory(mat,len*sizeof(int));
2232549d3d68SSatish Balay     ierr = PetscMemcpy(a->garray,oldmat->garray,len*sizeof(int));CHKERRQ(ierr);
22330ac07820SSatish Balay   } else a->garray = 0;
22340ac07820SSatish Balay 
22350ac07820SSatish Balay   ierr =  VecDuplicate(oldmat->lvec,&a->lvec);CHKERRQ(ierr);
22360ac07820SSatish Balay   PLogObjectParent(mat,a->lvec);
22370ac07820SSatish Balay   ierr =  VecScatterCopy(oldmat->Mvctx,&a->Mvctx);CHKERRQ(ierr);
2238e18c124aSSatish Balay 
22390ac07820SSatish Balay   PLogObjectParent(mat,a->Mvctx);
22402e8a6d31SBarry Smith   ierr =  MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr);
22410ac07820SSatish Balay   PLogObjectParent(mat,a->A);
22422e8a6d31SBarry Smith   ierr =  MatDuplicate(oldmat->B,cpvalues,&a->B);CHKERRQ(ierr);
22430ac07820SSatish Balay   PLogObjectParent(mat,a->B);
22440ac07820SSatish Balay   ierr = OptionsHasName(PETSC_NULL,"-help",&flg);CHKERRQ(ierr);
2245e18c124aSSatish Balay   ierr = FListDuplicate(mat->qlist,&matin->qlist);CHKERRQ(ierr);
22460ac07820SSatish Balay   if (flg) {
22470ac07820SSatish Balay     ierr = MatPrintHelp(mat);CHKERRQ(ierr);
22480ac07820SSatish Balay   }
22490ac07820SSatish Balay   *newmat = mat;
22503a40ed3dSBarry Smith   PetscFunctionReturn(0);
22510ac07820SSatish Balay }
225257b952d6SSatish Balay 
225357b952d6SSatish Balay #include "sys.h"
225457b952d6SSatish Balay 
22555615d1e5SSatish Balay #undef __FUNC__
22565615d1e5SSatish Balay #define __FUNC__ "MatLoad_MPIBAIJ"
225757b952d6SSatish Balay int MatLoad_MPIBAIJ(Viewer viewer,MatType type,Mat *newmat)
225857b952d6SSatish Balay {
225957b952d6SSatish Balay   Mat          A;
226057b952d6SSatish Balay   int          i, nz, ierr, j,rstart, rend, fd;
226157b952d6SSatish Balay   Scalar       *vals,*buf;
226257b952d6SSatish Balay   MPI_Comm     comm = ((PetscObject)viewer)->comm;
226357b952d6SSatish Balay   MPI_Status   status;
2264cee3aa6bSSatish Balay   int          header[4],rank,size,*rowlengths = 0,M,N,m,*rowners,*browners,maxnz,*cols;
226557b952d6SSatish Balay   int          *locrowlens,*sndcounts = 0,*procsnz = 0, jj,*mycols,*ibuf;
226640011551SBarry Smith   int          flg,tag = ((PetscObject)viewer)->tag,bs=1,Mbs,mbs,extra_rows;
226757b952d6SSatish Balay   int          *dlens,*odlens,*mask,*masked1,*masked2,rowcount,odcount;
226857b952d6SSatish Balay   int          dcount,kmax,k,nzcount,tmp;
226957b952d6SSatish Balay 
2270d64ed03dSBarry Smith   PetscFunctionBegin;
227157b952d6SSatish Balay   ierr = OptionsGetInt(PETSC_NULL,"-matload_block_size",&bs,&flg);CHKERRQ(ierr);
227257b952d6SSatish Balay 
2273d132466eSBarry Smith   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
2274d132466eSBarry Smith   ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr);
227557b952d6SSatish Balay   if (!rank) {
227657b952d6SSatish Balay     ierr = ViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr);
2277e5638eb3SBarry Smith     ierr = PetscBinaryRead(fd,(char *)header,4,PETSC_INT);CHKERRQ(ierr);
2278a8c6a408SBarry Smith     if (header[0] != MAT_COOKIE) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,0,"not matrix object");
2279d64ed03dSBarry Smith     if (header[3] < 0) {
2280a8c6a408SBarry Smith       SETERRQ(PETSC_ERR_FILE_UNEXPECTED,1,"Matrix stored in special format, cannot load as MPIBAIJ");
2281d64ed03dSBarry Smith     }
22826c5fab8fSBarry Smith   }
2283d64ed03dSBarry Smith 
2284ca161407SBarry Smith   ierr = MPI_Bcast(header+1,3,MPI_INT,0,comm);CHKERRQ(ierr);
228557b952d6SSatish Balay   M = header[1]; N = header[2];
228657b952d6SSatish Balay 
2287a8c6a408SBarry Smith   if (M != N) SETERRQ(PETSC_ERR_SUP,0,"Can only do square matrices");
228857b952d6SSatish Balay 
228957b952d6SSatish Balay   /*
229057b952d6SSatish Balay      This code adds extra rows to make sure the number of rows is
229157b952d6SSatish Balay      divisible by the blocksize
229257b952d6SSatish Balay   */
229357b952d6SSatish Balay   Mbs        = M/bs;
229457b952d6SSatish Balay   extra_rows = bs - M + bs*(Mbs);
229557b952d6SSatish Balay   if (extra_rows == bs) extra_rows = 0;
229657b952d6SSatish Balay   else                  Mbs++;
229757b952d6SSatish Balay   if (extra_rows &&!rank) {
2298b0267e0aSLois Curfman McInnes     PLogInfo(0,"MatLoad_MPIBAIJ:Padding loaded matrix to match blocksize\n");
229957b952d6SSatish Balay   }
2300537820f0SBarry Smith 
230157b952d6SSatish Balay   /* determine ownership of all rows */
230257b952d6SSatish Balay   mbs = Mbs/size + ((Mbs % size) > rank);
230357b952d6SSatish Balay   m   = mbs * bs;
2304cee3aa6bSSatish Balay   rowners = (int *) PetscMalloc(2*(size+2)*sizeof(int));CHKPTRQ(rowners);
2305cee3aa6bSSatish Balay   browners = rowners + size + 1;
2306ca161407SBarry Smith   ierr = MPI_Allgather(&mbs,1,MPI_INT,rowners+1,1,MPI_INT,comm);CHKERRQ(ierr);
230757b952d6SSatish Balay   rowners[0] = 0;
2308cee3aa6bSSatish Balay   for ( i=2; i<=size; i++ ) rowners[i] += rowners[i-1];
2309cee3aa6bSSatish Balay   for ( i=0; i<=size;  i++ ) browners[i] = rowners[i]*bs;
231057b952d6SSatish Balay   rstart = rowners[rank];
231157b952d6SSatish Balay   rend   = rowners[rank+1];
231257b952d6SSatish Balay 
231357b952d6SSatish Balay   /* distribute row lengths to all processors */
231457b952d6SSatish Balay   locrowlens = (int*) PetscMalloc( (rend-rstart)*bs*sizeof(int) );CHKPTRQ(locrowlens);
231557b952d6SSatish Balay   if (!rank) {
231657b952d6SSatish Balay     rowlengths = (int*) PetscMalloc( (M+extra_rows)*sizeof(int) );CHKPTRQ(rowlengths);
2317e5638eb3SBarry Smith     ierr = PetscBinaryRead(fd,rowlengths,M,PETSC_INT);CHKERRQ(ierr);
231857b952d6SSatish Balay     for ( i=0; i<extra_rows; i++ ) rowlengths[M+i] = 1;
231957b952d6SSatish Balay     sndcounts = (int*) PetscMalloc( size*sizeof(int) );CHKPTRQ(sndcounts);
2320cee3aa6bSSatish Balay     for ( i=0; i<size; i++ ) sndcounts[i] = browners[i+1] - browners[i];
2321ca161407SBarry Smith     ierr = MPI_Scatterv(rowlengths,sndcounts,browners,MPI_INT,locrowlens,(rend-rstart)*bs,MPI_INT,0,comm);CHKERRQ(ierr);
2322606d414cSSatish Balay     ierr = PetscFree(sndcounts);CHKERRQ(ierr);
2323d64ed03dSBarry Smith   } else {
2324ca161407SBarry Smith     ierr = MPI_Scatterv(0,0,0,MPI_INT,locrowlens,(rend-rstart)*bs,MPI_INT, 0,comm);CHKERRQ(ierr);
232557b952d6SSatish Balay   }
232657b952d6SSatish Balay 
232757b952d6SSatish Balay   if (!rank) {
232857b952d6SSatish Balay     /* calculate the number of nonzeros on each processor */
232957b952d6SSatish Balay     procsnz = (int*) PetscMalloc( size*sizeof(int) );CHKPTRQ(procsnz);
2330549d3d68SSatish Balay     ierr    = PetscMemzero(procsnz,size*sizeof(int));CHKERRQ(ierr);
233157b952d6SSatish Balay     for ( i=0; i<size; i++ ) {
233257b952d6SSatish Balay       for ( j=rowners[i]*bs; j< rowners[i+1]*bs; j++ ) {
233357b952d6SSatish Balay         procsnz[i] += rowlengths[j];
233457b952d6SSatish Balay       }
233557b952d6SSatish Balay     }
2336606d414cSSatish Balay     ierr = PetscFree(rowlengths);CHKERRQ(ierr);
233757b952d6SSatish Balay 
233857b952d6SSatish Balay     /* determine max buffer needed and allocate it */
233957b952d6SSatish Balay     maxnz = 0;
234057b952d6SSatish Balay     for ( i=0; i<size; i++ ) {
234157b952d6SSatish Balay       maxnz = PetscMax(maxnz,procsnz[i]);
234257b952d6SSatish Balay     }
234357b952d6SSatish Balay     cols = (int *) PetscMalloc( maxnz*sizeof(int) );CHKPTRQ(cols);
234457b952d6SSatish Balay 
234557b952d6SSatish Balay     /* read in my part of the matrix column indices  */
234657b952d6SSatish Balay     nz = procsnz[0];
234757b952d6SSatish Balay     ibuf = (int *) PetscMalloc( nz*sizeof(int) );CHKPTRQ(ibuf);
234857b952d6SSatish Balay     mycols = ibuf;
2349cee3aa6bSSatish Balay     if (size == 1)  nz -= extra_rows;
2350e5638eb3SBarry Smith     ierr = PetscBinaryRead(fd,mycols,nz,PETSC_INT);CHKERRQ(ierr);
2351cee3aa6bSSatish Balay     if (size == 1)  for (i=0; i< extra_rows; i++) { mycols[nz+i] = M+i; }
2352cee3aa6bSSatish Balay 
235357b952d6SSatish Balay     /* read in every ones (except the last) and ship off */
235457b952d6SSatish Balay     for ( i=1; i<size-1; i++ ) {
235557b952d6SSatish Balay       nz   = procsnz[i];
2356e5638eb3SBarry Smith       ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr);
2357ca161407SBarry Smith       ierr = MPI_Send(cols,nz,MPI_INT,i,tag,comm);CHKERRQ(ierr);
235857b952d6SSatish Balay     }
235957b952d6SSatish Balay     /* read in the stuff for the last proc */
236057b952d6SSatish Balay     if ( size != 1 ) {
236157b952d6SSatish Balay       nz   = procsnz[size-1] - extra_rows;  /* the extra rows are not on the disk */
2362e5638eb3SBarry Smith       ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr);
236357b952d6SSatish Balay       for ( i=0; i<extra_rows; i++ ) cols[nz+i] = M+i;
2364ca161407SBarry Smith       ierr = MPI_Send(cols,nz+extra_rows,MPI_INT,size-1,tag,comm);CHKERRQ(ierr);
236557b952d6SSatish Balay     }
2366606d414cSSatish Balay     ierr = PetscFree(cols);CHKERRQ(ierr);
2367d64ed03dSBarry Smith   } else {
236857b952d6SSatish Balay     /* determine buffer space needed for message */
236957b952d6SSatish Balay     nz = 0;
237057b952d6SSatish Balay     for ( i=0; i<m; i++ ) {
237157b952d6SSatish Balay       nz += locrowlens[i];
237257b952d6SSatish Balay     }
237357b952d6SSatish Balay     ibuf   = (int*) PetscMalloc( nz*sizeof(int) );CHKPTRQ(ibuf);
237457b952d6SSatish Balay     mycols = ibuf;
237557b952d6SSatish Balay     /* receive message of column indices*/
2376ca161407SBarry Smith     ierr = MPI_Recv(mycols,nz,MPI_INT,0,tag,comm,&status);CHKERRQ(ierr);
2377ca161407SBarry Smith     ierr = MPI_Get_count(&status,MPI_INT,&maxnz);CHKERRQ(ierr);
2378a8c6a408SBarry Smith     if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,0,"something is wrong with file");
237957b952d6SSatish Balay   }
238057b952d6SSatish Balay 
238157b952d6SSatish Balay   /* loop over local rows, determining number of off diagonal entries */
2382cee3aa6bSSatish Balay   dlens  = (int *) PetscMalloc( 2*(rend-rstart+1)*sizeof(int) );CHKPTRQ(dlens);
2383cee3aa6bSSatish Balay   odlens = dlens + (rend-rstart);
238457b952d6SSatish Balay   mask   = (int *) PetscMalloc( 3*Mbs*sizeof(int) );CHKPTRQ(mask);
2385549d3d68SSatish Balay   ierr   = PetscMemzero(mask,3*Mbs*sizeof(int));CHKERRQ(ierr);
238657b952d6SSatish Balay   masked1 = mask    + Mbs;
238757b952d6SSatish Balay   masked2 = masked1 + Mbs;
238857b952d6SSatish Balay   rowcount = 0; nzcount = 0;
238957b952d6SSatish Balay   for ( i=0; i<mbs; i++ ) {
239057b952d6SSatish Balay     dcount  = 0;
239157b952d6SSatish Balay     odcount = 0;
239257b952d6SSatish Balay     for ( j=0; j<bs; j++ ) {
239357b952d6SSatish Balay       kmax = locrowlens[rowcount];
239457b952d6SSatish Balay       for ( k=0; k<kmax; k++ ) {
239557b952d6SSatish Balay         tmp = mycols[nzcount++]/bs;
239657b952d6SSatish Balay         if (!mask[tmp]) {
239757b952d6SSatish Balay           mask[tmp] = 1;
239857b952d6SSatish Balay           if (tmp < rstart || tmp >= rend ) masked2[odcount++] = tmp;
239957b952d6SSatish Balay           else masked1[dcount++] = tmp;
240057b952d6SSatish Balay         }
240157b952d6SSatish Balay       }
240257b952d6SSatish Balay       rowcount++;
240357b952d6SSatish Balay     }
2404cee3aa6bSSatish Balay 
240557b952d6SSatish Balay     dlens[i]  = dcount;
240657b952d6SSatish Balay     odlens[i] = odcount;
2407cee3aa6bSSatish Balay 
240857b952d6SSatish Balay     /* zero out the mask elements we set */
240957b952d6SSatish Balay     for ( j=0; j<dcount; j++ ) mask[masked1[j]] = 0;
241057b952d6SSatish Balay     for ( j=0; j<odcount; j++ ) mask[masked2[j]] = 0;
241157b952d6SSatish Balay   }
2412cee3aa6bSSatish Balay 
241357b952d6SSatish Balay   /* create our matrix */
2414549d3d68SSatish Balay   ierr = MatCreateMPIBAIJ(comm,bs,m,PETSC_DECIDE,M+extra_rows,N+extra_rows,0,dlens,0,odlens,newmat);CHKERRQ(ierr);
241557b952d6SSatish Balay   A = *newmat;
24166d4a8577SBarry Smith   MatSetOption(A,MAT_COLUMNS_SORTED);
241757b952d6SSatish Balay 
241857b952d6SSatish Balay   if (!rank) {
241957b952d6SSatish Balay     buf = (Scalar *) PetscMalloc( maxnz*sizeof(Scalar) );CHKPTRQ(buf);
242057b952d6SSatish Balay     /* read in my part of the matrix numerical values  */
242157b952d6SSatish Balay     nz = procsnz[0];
242257b952d6SSatish Balay     vals = buf;
2423cee3aa6bSSatish Balay     mycols = ibuf;
2424cee3aa6bSSatish Balay     if (size == 1)  nz -= extra_rows;
2425e5638eb3SBarry Smith     ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
2426cee3aa6bSSatish Balay     if (size == 1)  for (i=0; i< extra_rows; i++) { vals[nz+i] = 1.0; }
2427537820f0SBarry Smith 
242857b952d6SSatish Balay     /* insert into matrix */
242957b952d6SSatish Balay     jj      = rstart*bs;
243057b952d6SSatish Balay     for ( i=0; i<m; i++ ) {
243157b952d6SSatish Balay       ierr = MatSetValues(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr);
243257b952d6SSatish Balay       mycols += locrowlens[i];
243357b952d6SSatish Balay       vals   += locrowlens[i];
243457b952d6SSatish Balay       jj++;
243557b952d6SSatish Balay     }
243657b952d6SSatish Balay     /* read in other processors (except the last one) and ship out */
243757b952d6SSatish Balay     for ( i=1; i<size-1; i++ ) {
243857b952d6SSatish Balay       nz   = procsnz[i];
243957b952d6SSatish Balay       vals = buf;
2440e5638eb3SBarry Smith       ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
2441ca161407SBarry Smith       ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,A->tag,comm);CHKERRQ(ierr);
244257b952d6SSatish Balay     }
244357b952d6SSatish Balay     /* the last proc */
244457b952d6SSatish Balay     if ( size != 1 ){
244557b952d6SSatish Balay       nz   = procsnz[i] - extra_rows;
2446cee3aa6bSSatish Balay       vals = buf;
2447e5638eb3SBarry Smith       ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
244857b952d6SSatish Balay       for ( i=0; i<extra_rows; i++ ) vals[nz+i] = 1.0;
2449ca161407SBarry Smith       ierr = MPI_Send(vals,nz+extra_rows,MPIU_SCALAR,size-1,A->tag,comm);CHKERRQ(ierr);
245057b952d6SSatish Balay     }
2451606d414cSSatish Balay     ierr = PetscFree(procsnz);CHKERRQ(ierr);
2452d64ed03dSBarry Smith   } else {
245357b952d6SSatish Balay     /* receive numeric values */
245457b952d6SSatish Balay     buf = (Scalar*) PetscMalloc( nz*sizeof(Scalar) );CHKPTRQ(buf);
245557b952d6SSatish Balay 
245657b952d6SSatish Balay     /* receive message of values*/
245757b952d6SSatish Balay     vals   = buf;
2458cee3aa6bSSatish Balay     mycols = ibuf;
2459ca161407SBarry Smith     ierr   = MPI_Recv(vals,nz,MPIU_SCALAR,0,A->tag,comm,&status);CHKERRQ(ierr);
2460ca161407SBarry Smith     ierr   = MPI_Get_count(&status,MPIU_SCALAR,&maxnz);CHKERRQ(ierr);
2461a8c6a408SBarry Smith     if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,0,"something is wrong with file");
246257b952d6SSatish Balay 
246357b952d6SSatish Balay     /* insert into matrix */
246457b952d6SSatish Balay     jj      = rstart*bs;
2465cee3aa6bSSatish Balay     for ( i=0; i<m; i++ ) {
246657b952d6SSatish Balay       ierr    = MatSetValues(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr);
246757b952d6SSatish Balay       mycols += locrowlens[i];
246857b952d6SSatish Balay       vals   += locrowlens[i];
246957b952d6SSatish Balay       jj++;
247057b952d6SSatish Balay     }
247157b952d6SSatish Balay   }
2472606d414cSSatish Balay   ierr = PetscFree(locrowlens);CHKERRQ(ierr);
2473606d414cSSatish Balay   ierr = PetscFree(buf);CHKERRQ(ierr);
2474606d414cSSatish Balay   ierr = PetscFree(ibuf);CHKERRQ(ierr);
2475606d414cSSatish Balay   ierr = PetscFree(rowners);CHKERRQ(ierr);
2476606d414cSSatish Balay   ierr = PetscFree(dlens);CHKERRQ(ierr);
2477606d414cSSatish Balay   ierr = PetscFree(mask);CHKERRQ(ierr);
24786d4a8577SBarry Smith   ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
24796d4a8577SBarry Smith   ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
24803a40ed3dSBarry Smith   PetscFunctionReturn(0);
248157b952d6SSatish Balay }
248257b952d6SSatish Balay 
248357b952d6SSatish Balay 
2484133cdb44SSatish Balay 
2485133cdb44SSatish Balay #undef __FUNC__
2486133cdb44SSatish Balay #define __FUNC__ "MatMPIBAIJSetHashTableFactor"
2487133cdb44SSatish Balay /*@
2488133cdb44SSatish Balay    MatMPIBAIJSetHashTableFactor - Sets the factor required to compute the size of the HashTable.
2489133cdb44SSatish Balay 
2490133cdb44SSatish Balay    Input Parameters:
2491133cdb44SSatish Balay .  mat  - the matrix
2492133cdb44SSatish Balay .  fact - factor
2493133cdb44SSatish Balay 
2494fee21e36SBarry Smith    Collective on Mat
2495fee21e36SBarry Smith 
24968c890885SBarry Smith    Level: advanced
24978c890885SBarry Smith 
2498133cdb44SSatish Balay   Notes:
2499133cdb44SSatish Balay    This can also be set by the command line option: -mat_use_hash_table fact
2500133cdb44SSatish Balay 
2501133cdb44SSatish Balay .keywords: matrix, hashtable, factor, HT
2502133cdb44SSatish Balay 
2503133cdb44SSatish Balay .seealso: MatSetOption()
2504133cdb44SSatish Balay @*/
2505133cdb44SSatish Balay int MatMPIBAIJSetHashTableFactor(Mat mat,double fact)
2506133cdb44SSatish Balay {
250725fdafccSSatish Balay   Mat_MPIBAIJ *baij;
2508133cdb44SSatish Balay 
2509133cdb44SSatish Balay   PetscFunctionBegin;
2510133cdb44SSatish Balay   PetscValidHeaderSpecific(mat,MAT_COOKIE);
251125fdafccSSatish Balay   if (mat->type != MATMPIBAIJ) {
2512133cdb44SSatish Balay       SETERRQ(PETSC_ERR_ARG_WRONG,1,"Incorrect matrix type. Use MPIBAIJ only.");
2513133cdb44SSatish Balay   }
2514133cdb44SSatish Balay   baij = (Mat_MPIBAIJ*) mat->data;
2515133cdb44SSatish Balay   baij->ht_fact = fact;
2516133cdb44SSatish Balay   PetscFunctionReturn(0);
2517133cdb44SSatish Balay }
2518