179bdfe76SSatish Balay 2e090d566SSatish Balay #include "src/mat/impls/baij/mpi/mpibaij.h" /*I "petscmat.h" I*/ 379bdfe76SSatish Balay 4dfbe8321SBarry Smith EXTERN PetscErrorCode MatSetUpMultiply_MPIBAIJ(Mat); 5dfbe8321SBarry Smith EXTERN PetscErrorCode DisAssemble_MPIBAIJ(Mat); 6b24ad042SBarry Smith EXTERN PetscErrorCode MatIncreaseOverlap_MPIBAIJ(Mat,PetscInt,IS[],PetscInt); 7b24ad042SBarry Smith EXTERN PetscErrorCode MatGetSubMatrices_MPIBAIJ(Mat,PetscInt,const IS[],const IS[],MatReuse,Mat *[]); 8b24ad042SBarry Smith EXTERN PetscErrorCode MatGetValues_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt [],PetscScalar []); 9b24ad042SBarry Smith EXTERN PetscErrorCode MatSetValues_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt [],const PetscScalar [],InsertMode); 10b24ad042SBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode); 11b24ad042SBarry Smith EXTERN PetscErrorCode MatGetRow_SeqBAIJ(Mat,PetscInt,PetscInt*,PetscInt*[],PetscScalar*[]); 12b24ad042SBarry Smith EXTERN PetscErrorCode MatRestoreRow_SeqBAIJ(Mat,PetscInt,PetscInt*,PetscInt*[],PetscScalar*[]); 13dfbe8321SBarry Smith EXTERN PetscErrorCode MatPrintHelp_SeqBAIJ(Mat); 14dfbe8321SBarry Smith EXTERN PetscErrorCode MatZeroRows_SeqBAIJ(Mat,IS,const PetscScalar*); 1593fea6afSBarry Smith 1693fea6afSBarry Smith /* UGLY, ugly, ugly 1787828ca2SBarry Smith When MatScalar == PetscScalar the function MatSetValuesBlocked_MPIBAIJ_MatScalar() does 1893fea6afSBarry Smith not exist. Otherwise ..._MatScalar() takes matrix elements in single precision and 1993fea6afSBarry Smith inserts them into the single precision data structure. The function MatSetValuesBlocked_MPIBAIJ() 2093fea6afSBarry Smith converts the entries into single precision and then calls ..._MatScalar() to put them 2193fea6afSBarry Smith into the single precision data structures. 2293fea6afSBarry Smith */ 2393fea6afSBarry Smith #if defined(PETSC_USE_MAT_SINGLE) 24b24ad042SBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_SeqBAIJ_MatScalar(Mat,PetscInt,const PetscInt*,PetscInt,const PetscInt*,const MatScalar*,InsertMode); 25b24ad042SBarry Smith EXTERN PetscErrorCode MatSetValues_MPIBAIJ_MatScalar(Mat,PetscInt,const PetscInt*,PetscInt,const PetscInt*,const MatScalar*,InsertMode); 26b24ad042SBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_MPIBAIJ_MatScalar(Mat,PetscInt,const PetscInt*,PetscInt,const PetscInt*,const MatScalar*,InsertMode); 27b24ad042SBarry Smith EXTERN PetscErrorCode MatSetValues_MPIBAIJ_HT_MatScalar(Mat,PetscInt,const PetscInt*,PetscInt,const PetscInt*,const MatScalar*,InsertMode); 28b24ad042SBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_MPIBAIJ_HT_MatScalar(Mat,PetscInt,const PetscInt*,PetscInt,const PetscInt*,const MatScalar*,InsertMode); 2993fea6afSBarry Smith #else 306fa18ffdSBarry Smith #define MatSetValuesBlocked_SeqBAIJ_MatScalar MatSetValuesBlocked_SeqBAIJ 3193fea6afSBarry Smith #define MatSetValues_MPIBAIJ_MatScalar MatSetValues_MPIBAIJ 3293fea6afSBarry Smith #define MatSetValuesBlocked_MPIBAIJ_MatScalar MatSetValuesBlocked_MPIBAIJ 336fa18ffdSBarry Smith #define MatSetValues_MPIBAIJ_HT_MatScalar MatSetValues_MPIBAIJ_HT 346fa18ffdSBarry Smith #define MatSetValuesBlocked_MPIBAIJ_HT_MatScalar MatSetValuesBlocked_MPIBAIJ_HT 3593fea6afSBarry Smith #endif 363b2fbd54SBarry Smith 374a2ae208SSatish Balay #undef __FUNCT__ 384a2ae208SSatish Balay #define __FUNCT__ "MatGetRowMax_MPIBAIJ" 39dfbe8321SBarry Smith PetscErrorCode MatGetRowMax_MPIBAIJ(Mat A,Vec v) 407843d17aSBarry Smith { 417843d17aSBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 42dfbe8321SBarry Smith PetscErrorCode ierr; 43b24ad042SBarry Smith PetscInt i; 4487828ca2SBarry Smith PetscScalar *va,*vb; 457843d17aSBarry Smith Vec vtmp; 467843d17aSBarry Smith 477843d17aSBarry Smith PetscFunctionBegin; 487843d17aSBarry Smith 497843d17aSBarry Smith ierr = MatGetRowMax(a->A,v);CHKERRQ(ierr); 501ebc52fbSHong Zhang ierr = VecGetArray(v,&va);CHKERRQ(ierr); 517843d17aSBarry Smith 52ac355199SBarry Smith ierr = VecCreateSeq(PETSC_COMM_SELF,A->m,&vtmp);CHKERRQ(ierr); 537843d17aSBarry Smith ierr = MatGetRowMax(a->B,vtmp);CHKERRQ(ierr); 541ebc52fbSHong Zhang ierr = VecGetArray(vtmp,&vb);CHKERRQ(ierr); 557843d17aSBarry Smith 56273d9f13SBarry Smith for (i=0; i<A->m; i++){ 57273d9f13SBarry Smith if (PetscAbsScalar(va[i]) < PetscAbsScalar(vb[i])) va[i] = vb[i]; 587843d17aSBarry Smith } 597843d17aSBarry Smith 601ebc52fbSHong Zhang ierr = VecRestoreArray(v,&va);CHKERRQ(ierr); 611ebc52fbSHong Zhang ierr = VecRestoreArray(vtmp,&vb);CHKERRQ(ierr); 62ac355199SBarry Smith ierr = VecDestroy(vtmp);CHKERRQ(ierr); 637843d17aSBarry Smith 647843d17aSBarry Smith PetscFunctionReturn(0); 657843d17aSBarry Smith } 667843d17aSBarry Smith 677fc3c18eSBarry Smith EXTERN_C_BEGIN 684a2ae208SSatish Balay #undef __FUNCT__ 694a2ae208SSatish Balay #define __FUNCT__ "MatStoreValues_MPIBAIJ" 70dfbe8321SBarry Smith PetscErrorCode MatStoreValues_MPIBAIJ(Mat mat) 717fc3c18eSBarry Smith { 727fc3c18eSBarry Smith Mat_MPIBAIJ *aij = (Mat_MPIBAIJ *)mat->data; 73dfbe8321SBarry Smith PetscErrorCode ierr; 747fc3c18eSBarry Smith 757fc3c18eSBarry Smith PetscFunctionBegin; 767fc3c18eSBarry Smith ierr = MatStoreValues(aij->A);CHKERRQ(ierr); 777fc3c18eSBarry Smith ierr = MatStoreValues(aij->B);CHKERRQ(ierr); 787fc3c18eSBarry Smith PetscFunctionReturn(0); 797fc3c18eSBarry Smith } 807fc3c18eSBarry Smith EXTERN_C_END 817fc3c18eSBarry Smith 827fc3c18eSBarry Smith EXTERN_C_BEGIN 834a2ae208SSatish Balay #undef __FUNCT__ 844a2ae208SSatish Balay #define __FUNCT__ "MatRetrieveValues_MPIBAIJ" 85dfbe8321SBarry Smith PetscErrorCode MatRetrieveValues_MPIBAIJ(Mat mat) 867fc3c18eSBarry Smith { 877fc3c18eSBarry Smith Mat_MPIBAIJ *aij = (Mat_MPIBAIJ *)mat->data; 88dfbe8321SBarry Smith PetscErrorCode ierr; 897fc3c18eSBarry Smith 907fc3c18eSBarry Smith PetscFunctionBegin; 917fc3c18eSBarry Smith ierr = MatRetrieveValues(aij->A);CHKERRQ(ierr); 927fc3c18eSBarry Smith ierr = MatRetrieveValues(aij->B);CHKERRQ(ierr); 937fc3c18eSBarry Smith PetscFunctionReturn(0); 947fc3c18eSBarry Smith } 957fc3c18eSBarry Smith EXTERN_C_END 967fc3c18eSBarry Smith 97537820f0SBarry Smith /* 98537820f0SBarry Smith Local utility routine that creates a mapping from the global column 9957b952d6SSatish Balay number to the local number in the off-diagonal part of the local 10057b952d6SSatish Balay storage of the matrix. This is done in a non scable way since the 10157b952d6SSatish Balay length of colmap equals the global matrix length. 10257b952d6SSatish Balay */ 1034a2ae208SSatish Balay #undef __FUNCT__ 1044a2ae208SSatish Balay #define __FUNCT__ "CreateColmap_MPIBAIJ_Private" 105dfbe8321SBarry Smith PetscErrorCode CreateColmap_MPIBAIJ_Private(Mat mat) 10657b952d6SSatish Balay { 10757b952d6SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 10857b952d6SSatish Balay Mat_SeqBAIJ *B = (Mat_SeqBAIJ*)baij->B->data; 1096849ba73SBarry Smith PetscErrorCode ierr; 110521d7252SBarry Smith PetscInt nbs = B->nbs,i,bs=mat->bs; 11157b952d6SSatish Balay 112d64ed03dSBarry Smith PetscFunctionBegin; 113aa482453SBarry Smith #if defined (PETSC_USE_CTABLE) 114f14a1c24SBarry Smith ierr = PetscTableCreate(baij->nbs,&baij->colmap);CHKERRQ(ierr); 11548e59246SSatish Balay for (i=0; i<nbs; i++){ 1160f5bd95cSBarry Smith ierr = PetscTableAdd(baij->colmap,baij->garray[i]+1,i*bs+1);CHKERRQ(ierr); 11748e59246SSatish Balay } 11848e59246SSatish Balay #else 119b24ad042SBarry Smith ierr = PetscMalloc((baij->Nbs+1)*sizeof(PetscInt),&baij->colmap);CHKERRQ(ierr); 12052e6d16bSBarry Smith ierr = PetscLogObjectMemory(mat,baij->Nbs*sizeof(PetscInt));CHKERRQ(ierr); 121b24ad042SBarry Smith ierr = PetscMemzero(baij->colmap,baij->Nbs*sizeof(PetscInt));CHKERRQ(ierr); 122928fc39bSSatish Balay for (i=0; i<nbs; i++) baij->colmap[baij->garray[i]] = i*bs+1; 12348e59246SSatish Balay #endif 1243a40ed3dSBarry Smith PetscFunctionReturn(0); 12557b952d6SSatish Balay } 12657b952d6SSatish Balay 12780c1aa95SSatish Balay #define CHUNKSIZE 10 12880c1aa95SSatish Balay 129f5e9677aSSatish Balay #define MatSetValues_SeqBAIJ_A_Private(row,col,value,addv) \ 13080c1aa95SSatish Balay { \ 13180c1aa95SSatish Balay \ 13280c1aa95SSatish Balay brow = row/bs; \ 13380c1aa95SSatish Balay rp = aj + ai[brow]; ap = aa + bs2*ai[brow]; \ 134ac7a638eSSatish Balay rmax = aimax[brow]; nrow = ailen[brow]; \ 13580c1aa95SSatish Balay bcol = col/bs; \ 13680c1aa95SSatish Balay ridx = row % bs; cidx = col % bs; \ 137ab26458aSBarry Smith low = 0; high = nrow; \ 138ab26458aSBarry Smith while (high-low > 3) { \ 139ab26458aSBarry Smith t = (low+high)/2; \ 140ab26458aSBarry Smith if (rp[t] > bcol) high = t; \ 141ab26458aSBarry Smith else low = t; \ 142ab26458aSBarry Smith } \ 143ab26458aSBarry Smith for (_i=low; _i<high; _i++) { \ 14480c1aa95SSatish Balay if (rp[_i] > bcol) break; \ 14580c1aa95SSatish Balay if (rp[_i] == bcol) { \ 14680c1aa95SSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 147eada6651SSatish Balay if (addv == ADD_VALUES) *bap += value; \ 148eada6651SSatish Balay else *bap = value; \ 149ac7a638eSSatish Balay goto a_noinsert; \ 15080c1aa95SSatish Balay } \ 15180c1aa95SSatish Balay } \ 15289280ab3SLois Curfman McInnes if (a->nonew == 1) goto a_noinsert; \ 15377431f27SBarry Smith else if (a->nonew == -1) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \ 15480c1aa95SSatish Balay if (nrow >= rmax) { \ 15580c1aa95SSatish Balay /* there is no extra room in row, therefore enlarge */ \ 156b24ad042SBarry Smith PetscInt new_nz = ai[a->mbs] + CHUNKSIZE,len,*new_i,*new_j; \ 1573eda8832SBarry Smith MatScalar *new_a; \ 15880c1aa95SSatish Balay \ 15977431f27SBarry Smith if (a->nonew == -2) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) in the matrix", row, col); \ 16089280ab3SLois Curfman McInnes \ 16180c1aa95SSatish Balay /* malloc new storage space */ \ 162b24ad042SBarry Smith len = new_nz*(sizeof(PetscInt)+bs2*sizeof(MatScalar))+(a->mbs+1)*sizeof(PetscInt); \ 16382502324SSatish Balay ierr = PetscMalloc(len,&new_a);CHKERRQ(ierr); \ 164b24ad042SBarry Smith new_j = (PetscInt*)(new_a + bs2*new_nz); \ 16580c1aa95SSatish Balay new_i = new_j + new_nz; \ 16680c1aa95SSatish Balay \ 16780c1aa95SSatish Balay /* copy over old data into new slots */ \ 16880c1aa95SSatish Balay for (ii=0; ii<brow+1; ii++) {new_i[ii] = ai[ii];} \ 16980c1aa95SSatish Balay for (ii=brow+1; ii<a->mbs+1; ii++) {new_i[ii] = ai[ii]+CHUNKSIZE;} \ 170b24ad042SBarry Smith ierr = PetscMemcpy(new_j,aj,(ai[brow]+nrow)*sizeof(PetscInt));CHKERRQ(ierr); \ 17180c1aa95SSatish Balay len = (new_nz - CHUNKSIZE - ai[brow] - nrow); \ 172b24ad042SBarry Smith ierr = PetscMemcpy(new_j+ai[brow]+nrow+CHUNKSIZE,aj+ai[brow]+nrow,len*sizeof(PetscInt));CHKERRQ(ierr); \ 1733eda8832SBarry Smith ierr = PetscMemcpy(new_a,aa,(ai[brow]+nrow)*bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 17487828ca2SBarry Smith ierr = PetscMemzero(new_a+bs2*(ai[brow]+nrow),bs2*CHUNKSIZE*sizeof(PetscScalar));CHKERRQ(ierr); \ 175549d3d68SSatish Balay ierr = PetscMemcpy(new_a+bs2*(ai[brow]+nrow+CHUNKSIZE), \ 1763eda8832SBarry Smith aa+bs2*(ai[brow]+nrow),bs2*len*sizeof(MatScalar));CHKERRQ(ierr); \ 17780c1aa95SSatish Balay /* free up old matrix storage */ \ 178606d414cSSatish Balay ierr = PetscFree(a->a);CHKERRQ(ierr); \ 179606d414cSSatish Balay if (!a->singlemalloc) { \ 180606d414cSSatish Balay ierr = PetscFree(a->i);CHKERRQ(ierr); \ 181606d414cSSatish Balay ierr = PetscFree(a->j);CHKERRQ(ierr);\ 182606d414cSSatish Balay } \ 18380c1aa95SSatish Balay aa = a->a = new_a; ai = a->i = new_i; aj = a->j = new_j; \ 1847c922b88SBarry Smith a->singlemalloc = PETSC_TRUE; \ 18580c1aa95SSatish Balay \ 18680c1aa95SSatish Balay rp = aj + ai[brow]; ap = aa + bs2*ai[brow]; \ 187ac7a638eSSatish Balay rmax = aimax[brow] = aimax[brow] + CHUNKSIZE; \ 18852e6d16bSBarry Smith ierr = PetscLogObjectMemory(A,CHUNKSIZE*(sizeof(PetscInt) + bs2*sizeof(MatScalar)));CHKERRQ(ierr); \ 18980c1aa95SSatish Balay a->maxnz += bs2*CHUNKSIZE; \ 19080c1aa95SSatish Balay a->reallocs++; \ 19180c1aa95SSatish Balay a->nz++; \ 19280c1aa95SSatish Balay } \ 19380c1aa95SSatish Balay N = nrow++ - 1; \ 19480c1aa95SSatish Balay /* shift up all the later entries in this row */ \ 19580c1aa95SSatish Balay for (ii=N; ii>=_i; ii--) { \ 19680c1aa95SSatish Balay rp[ii+1] = rp[ii]; \ 1973eda8832SBarry Smith ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 19880c1aa95SSatish Balay } \ 1993eda8832SBarry Smith if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr); } \ 20080c1aa95SSatish Balay rp[_i] = bcol; \ 20180c1aa95SSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 202ac7a638eSSatish Balay a_noinsert:; \ 20380c1aa95SSatish Balay ailen[brow] = nrow; \ 20480c1aa95SSatish Balay } 20557b952d6SSatish Balay 206ac7a638eSSatish Balay #define MatSetValues_SeqBAIJ_B_Private(row,col,value,addv) \ 207ac7a638eSSatish Balay { \ 208ac7a638eSSatish Balay brow = row/bs; \ 209ac7a638eSSatish Balay rp = bj + bi[brow]; ap = ba + bs2*bi[brow]; \ 210ac7a638eSSatish Balay rmax = bimax[brow]; nrow = bilen[brow]; \ 211ac7a638eSSatish Balay bcol = col/bs; \ 212ac7a638eSSatish Balay ridx = row % bs; cidx = col % bs; \ 213ac7a638eSSatish Balay low = 0; high = nrow; \ 214ac7a638eSSatish Balay while (high-low > 3) { \ 215ac7a638eSSatish Balay t = (low+high)/2; \ 216ac7a638eSSatish Balay if (rp[t] > bcol) high = t; \ 217ac7a638eSSatish Balay else low = t; \ 218ac7a638eSSatish Balay } \ 219ac7a638eSSatish Balay for (_i=low; _i<high; _i++) { \ 220ac7a638eSSatish Balay if (rp[_i] > bcol) break; \ 221ac7a638eSSatish Balay if (rp[_i] == bcol) { \ 222ac7a638eSSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 223ac7a638eSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 224ac7a638eSSatish Balay else *bap = value; \ 225ac7a638eSSatish Balay goto b_noinsert; \ 226ac7a638eSSatish Balay } \ 227ac7a638eSSatish Balay } \ 22889280ab3SLois Curfman McInnes if (b->nonew == 1) goto b_noinsert; \ 22977431f27SBarry Smith else if (b->nonew == -1) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \ 230ac7a638eSSatish Balay if (nrow >= rmax) { \ 231ac7a638eSSatish Balay /* there is no extra room in row, therefore enlarge */ \ 232b24ad042SBarry Smith PetscInt new_nz = bi[b->mbs] + CHUNKSIZE,len,*new_i,*new_j; \ 2333eda8832SBarry Smith MatScalar *new_a; \ 234ac7a638eSSatish Balay \ 23577431f27SBarry Smith if (b->nonew == -2) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) in the matrix", row, col); \ 23689280ab3SLois Curfman McInnes \ 237ac7a638eSSatish Balay /* malloc new storage space */ \ 238b24ad042SBarry Smith len = new_nz*(sizeof(PetscInt)+bs2*sizeof(MatScalar))+(b->mbs+1)*sizeof(PetscInt); \ 23982502324SSatish Balay ierr = PetscMalloc(len,&new_a);CHKERRQ(ierr); \ 240b24ad042SBarry Smith new_j = (PetscInt*)(new_a + bs2*new_nz); \ 241ac7a638eSSatish Balay new_i = new_j + new_nz; \ 242ac7a638eSSatish Balay \ 243ac7a638eSSatish Balay /* copy over old data into new slots */ \ 244ac7a638eSSatish Balay for (ii=0; ii<brow+1; ii++) {new_i[ii] = bi[ii];} \ 24574c639caSSatish Balay for (ii=brow+1; ii<b->mbs+1; ii++) {new_i[ii] = bi[ii]+CHUNKSIZE;} \ 246b24ad042SBarry Smith ierr = PetscMemcpy(new_j,bj,(bi[brow]+nrow)*sizeof(PetscInt));CHKERRQ(ierr); \ 247ac7a638eSSatish Balay len = (new_nz - CHUNKSIZE - bi[brow] - nrow); \ 248b24ad042SBarry Smith ierr = PetscMemcpy(new_j+bi[brow]+nrow+CHUNKSIZE,bj+bi[brow]+nrow,len*sizeof(PetscInt));CHKERRQ(ierr); \ 2493eda8832SBarry Smith ierr = PetscMemcpy(new_a,ba,(bi[brow]+nrow)*bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 2503eda8832SBarry Smith ierr = PetscMemzero(new_a+bs2*(bi[brow]+nrow),bs2*CHUNKSIZE*sizeof(MatScalar));CHKERRQ(ierr); \ 251549d3d68SSatish Balay ierr = PetscMemcpy(new_a+bs2*(bi[brow]+nrow+CHUNKSIZE), \ 2523eda8832SBarry Smith ba+bs2*(bi[brow]+nrow),bs2*len*sizeof(MatScalar));CHKERRQ(ierr); \ 253ac7a638eSSatish Balay /* free up old matrix storage */ \ 254606d414cSSatish Balay ierr = PetscFree(b->a);CHKERRQ(ierr); \ 255606d414cSSatish Balay if (!b->singlemalloc) { \ 256606d414cSSatish Balay ierr = PetscFree(b->i);CHKERRQ(ierr); \ 257606d414cSSatish Balay ierr = PetscFree(b->j);CHKERRQ(ierr); \ 258606d414cSSatish Balay } \ 25974c639caSSatish Balay ba = b->a = new_a; bi = b->i = new_i; bj = b->j = new_j; \ 2607c922b88SBarry Smith b->singlemalloc = PETSC_TRUE; \ 261ac7a638eSSatish Balay \ 262ac7a638eSSatish Balay rp = bj + bi[brow]; ap = ba + bs2*bi[brow]; \ 263ac7a638eSSatish Balay rmax = bimax[brow] = bimax[brow] + CHUNKSIZE; \ 26452e6d16bSBarry Smith ierr = PetscLogObjectMemory(B,CHUNKSIZE*(sizeof(PetscInt) + bs2*sizeof(MatScalar)));CHKERRQ(ierr); \ 26574c639caSSatish Balay b->maxnz += bs2*CHUNKSIZE; \ 26674c639caSSatish Balay b->reallocs++; \ 26774c639caSSatish Balay b->nz++; \ 268ac7a638eSSatish Balay } \ 269ac7a638eSSatish Balay N = nrow++ - 1; \ 270ac7a638eSSatish Balay /* shift up all the later entries in this row */ \ 271ac7a638eSSatish Balay for (ii=N; ii>=_i; ii--) { \ 272ac7a638eSSatish Balay rp[ii+1] = rp[ii]; \ 2733eda8832SBarry Smith ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 274ac7a638eSSatish Balay } \ 2753eda8832SBarry Smith if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr);} \ 276ac7a638eSSatish Balay rp[_i] = bcol; \ 277ac7a638eSSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 278ac7a638eSSatish Balay b_noinsert:; \ 279ac7a638eSSatish Balay bilen[brow] = nrow; \ 280ac7a638eSSatish Balay } 281ac7a638eSSatish Balay 28293fea6afSBarry Smith #if defined(PETSC_USE_MAT_SINGLE) 2834a2ae208SSatish Balay #undef __FUNCT__ 2844a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_MPIBAIJ" 285b24ad042SBarry Smith PetscErrorCode MatSetValues_MPIBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv) 28657b952d6SSatish Balay { 2876fa18ffdSBarry Smith Mat_MPIBAIJ *b = (Mat_MPIBAIJ*)mat->data; 288dfbe8321SBarry Smith PetscErrorCode ierr; 289b24ad042SBarry Smith PetscInt i,N = m*n; 2906fa18ffdSBarry Smith MatScalar *vsingle; 29193fea6afSBarry Smith 29293fea6afSBarry Smith PetscFunctionBegin; 2936fa18ffdSBarry Smith if (N > b->setvalueslen) { 2946fa18ffdSBarry Smith if (b->setvaluescopy) {ierr = PetscFree(b->setvaluescopy);CHKERRQ(ierr);} 29582502324SSatish Balay ierr = PetscMalloc(N*sizeof(MatScalar),&b->setvaluescopy);CHKERRQ(ierr); 2966fa18ffdSBarry Smith b->setvalueslen = N; 2976fa18ffdSBarry Smith } 2986fa18ffdSBarry Smith vsingle = b->setvaluescopy; 2996fa18ffdSBarry Smith 30093fea6afSBarry Smith for (i=0; i<N; i++) { 30193fea6afSBarry Smith vsingle[i] = v[i]; 30293fea6afSBarry Smith } 30393fea6afSBarry Smith ierr = MatSetValues_MPIBAIJ_MatScalar(mat,m,im,n,in,vsingle,addv);CHKERRQ(ierr); 30493fea6afSBarry Smith PetscFunctionReturn(0); 30593fea6afSBarry Smith } 30693fea6afSBarry Smith 3074a2ae208SSatish Balay #undef __FUNCT__ 3084a2ae208SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_MPIBAIJ" 309b24ad042SBarry Smith PetscErrorCode MatSetValuesBlocked_MPIBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv) 31093fea6afSBarry Smith { 3116fa18ffdSBarry Smith Mat_MPIBAIJ *b = (Mat_MPIBAIJ*)mat->data; 312dfbe8321SBarry Smith PetscErrorCode ierr; 313b24ad042SBarry Smith PetscInt i,N = m*n*b->bs2; 3146fa18ffdSBarry Smith MatScalar *vsingle; 31593fea6afSBarry Smith 31693fea6afSBarry Smith PetscFunctionBegin; 3176fa18ffdSBarry Smith if (N > b->setvalueslen) { 3186fa18ffdSBarry Smith if (b->setvaluescopy) {ierr = PetscFree(b->setvaluescopy);CHKERRQ(ierr);} 31982502324SSatish Balay ierr = PetscMalloc(N*sizeof(MatScalar),&b->setvaluescopy);CHKERRQ(ierr); 3206fa18ffdSBarry Smith b->setvalueslen = N; 3216fa18ffdSBarry Smith } 3226fa18ffdSBarry Smith vsingle = b->setvaluescopy; 32393fea6afSBarry Smith for (i=0; i<N; i++) { 32493fea6afSBarry Smith vsingle[i] = v[i]; 32593fea6afSBarry Smith } 32693fea6afSBarry Smith ierr = MatSetValuesBlocked_MPIBAIJ_MatScalar(mat,m,im,n,in,vsingle,addv);CHKERRQ(ierr); 32793fea6afSBarry Smith PetscFunctionReturn(0); 32893fea6afSBarry Smith } 3296fa18ffdSBarry Smith 3304a2ae208SSatish Balay #undef __FUNCT__ 3314a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_MPIBAIJ_HT" 332b24ad042SBarry Smith PetscErrorCode MatSetValues_MPIBAIJ_HT(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv) 3336fa18ffdSBarry Smith { 3346fa18ffdSBarry Smith Mat_MPIBAIJ *b = (Mat_MPIBAIJ*)mat->data; 335dfbe8321SBarry Smith PetscErrorCode ierr; 336b24ad042SBarry Smith PetscInt i,N = m*n; 3376fa18ffdSBarry Smith MatScalar *vsingle; 3386fa18ffdSBarry Smith 3396fa18ffdSBarry Smith PetscFunctionBegin; 3406fa18ffdSBarry Smith if (N > b->setvalueslen) { 3416fa18ffdSBarry Smith if (b->setvaluescopy) {ierr = PetscFree(b->setvaluescopy);CHKERRQ(ierr);} 34282502324SSatish Balay ierr = PetscMalloc(N*sizeof(MatScalar),&b->setvaluescopy);CHKERRQ(ierr); 3436fa18ffdSBarry Smith b->setvalueslen = N; 3446fa18ffdSBarry Smith } 3456fa18ffdSBarry Smith vsingle = b->setvaluescopy; 3466fa18ffdSBarry Smith for (i=0; i<N; i++) { 3476fa18ffdSBarry Smith vsingle[i] = v[i]; 3486fa18ffdSBarry Smith } 3496fa18ffdSBarry Smith ierr = MatSetValues_MPIBAIJ_HT_MatScalar(mat,m,im,n,in,vsingle,addv);CHKERRQ(ierr); 3506fa18ffdSBarry Smith PetscFunctionReturn(0); 3516fa18ffdSBarry Smith } 3526fa18ffdSBarry Smith 3534a2ae208SSatish Balay #undef __FUNCT__ 3544a2ae208SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_MPIBAIJ_HT" 355b24ad042SBarry Smith PetscErrorCode MatSetValuesBlocked_MPIBAIJ_HT(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv) 3566fa18ffdSBarry Smith { 3576fa18ffdSBarry Smith Mat_MPIBAIJ *b = (Mat_MPIBAIJ*)mat->data; 358dfbe8321SBarry Smith PetscErrorCode ierr; 359b24ad042SBarry Smith PetscInt i,N = m*n*b->bs2; 3606fa18ffdSBarry Smith MatScalar *vsingle; 3616fa18ffdSBarry Smith 3626fa18ffdSBarry Smith PetscFunctionBegin; 3636fa18ffdSBarry Smith if (N > b->setvalueslen) { 3646fa18ffdSBarry Smith if (b->setvaluescopy) {ierr = PetscFree(b->setvaluescopy);CHKERRQ(ierr);} 36582502324SSatish Balay ierr = PetscMalloc(N*sizeof(MatScalar),&b->setvaluescopy);CHKERRQ(ierr); 3666fa18ffdSBarry Smith b->setvalueslen = N; 3676fa18ffdSBarry Smith } 3686fa18ffdSBarry Smith vsingle = b->setvaluescopy; 3696fa18ffdSBarry Smith for (i=0; i<N; i++) { 3706fa18ffdSBarry Smith vsingle[i] = v[i]; 3716fa18ffdSBarry Smith } 3726fa18ffdSBarry Smith ierr = MatSetValuesBlocked_MPIBAIJ_HT_MatScalar(mat,m,im,n,in,vsingle,addv);CHKERRQ(ierr); 3736fa18ffdSBarry Smith PetscFunctionReturn(0); 3746fa18ffdSBarry Smith } 37593fea6afSBarry Smith #endif 37693fea6afSBarry Smith 3774a2ae208SSatish Balay #undef __FUNCT__ 378e03e44c9SSatish Balay #define __FUNCT__ "MatSetValues_MPIBAIJ_MatScalar" 379b24ad042SBarry Smith PetscErrorCode MatSetValues_MPIBAIJ_MatScalar(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const MatScalar v[],InsertMode addv) 38093fea6afSBarry Smith { 38157b952d6SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 38293fea6afSBarry Smith MatScalar value; 383273d9f13SBarry Smith PetscTruth roworiented = baij->roworiented; 384dfbe8321SBarry Smith PetscErrorCode ierr; 385b24ad042SBarry Smith PetscInt i,j,row,col; 386b24ad042SBarry Smith PetscInt rstart_orig=baij->rstart_bs; 387b24ad042SBarry Smith PetscInt rend_orig=baij->rend_bs,cstart_orig=baij->cstart_bs; 388521d7252SBarry Smith PetscInt cend_orig=baij->cend_bs,bs=mat->bs; 38957b952d6SSatish Balay 390eada6651SSatish Balay /* Some Variables required in the macro */ 39180c1aa95SSatish Balay Mat A = baij->A; 39280c1aa95SSatish Balay Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)(A)->data; 393b24ad042SBarry Smith PetscInt *aimax=a->imax,*ai=a->i,*ailen=a->ilen,*aj=a->j; 3943eda8832SBarry Smith MatScalar *aa=a->a; 395ac7a638eSSatish Balay 396ac7a638eSSatish Balay Mat B = baij->B; 397ac7a638eSSatish Balay Mat_SeqBAIJ *b = (Mat_SeqBAIJ*)(B)->data; 398b24ad042SBarry Smith PetscInt *bimax=b->imax,*bi=b->i,*bilen=b->ilen,*bj=b->j; 3993eda8832SBarry Smith MatScalar *ba=b->a; 400ac7a638eSSatish Balay 401b24ad042SBarry Smith PetscInt *rp,ii,nrow,_i,rmax,N,brow,bcol; 402b24ad042SBarry Smith PetscInt low,high,t,ridx,cidx,bs2=a->bs2; 4033eda8832SBarry Smith MatScalar *ap,*bap; 40480c1aa95SSatish Balay 405d64ed03dSBarry Smith PetscFunctionBegin; 40657b952d6SSatish Balay for (i=0; i<m; i++) { 4075ef9f2a5SBarry Smith if (im[i] < 0) continue; 4082515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 40977431f27SBarry Smith if (im[i] >= mat->M) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],mat->M-1); 410639f9d9dSBarry Smith #endif 41157b952d6SSatish Balay if (im[i] >= rstart_orig && im[i] < rend_orig) { 41257b952d6SSatish Balay row = im[i] - rstart_orig; 41357b952d6SSatish Balay for (j=0; j<n; j++) { 41457b952d6SSatish Balay if (in[j] >= cstart_orig && in[j] < cend_orig){ 41557b952d6SSatish Balay col = in[j] - cstart_orig; 41657b952d6SSatish Balay if (roworiented) value = v[i*n+j]; else value = v[i+j*m]; 417f5e9677aSSatish Balay MatSetValues_SeqBAIJ_A_Private(row,col,value,addv); 41880c1aa95SSatish Balay /* ierr = MatSetValues_SeqBAIJ(baij->A,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 41973959e64SBarry Smith } else if (in[j] < 0) continue; 4202515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 42177431f27SBarry Smith else if (in[j] >= mat->N) {SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",in[i],mat->N-1);} 422639f9d9dSBarry Smith #endif 42357b952d6SSatish Balay else { 42457b952d6SSatish Balay if (mat->was_assembled) { 425905e6a2fSBarry Smith if (!baij->colmap) { 426905e6a2fSBarry Smith ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 427905e6a2fSBarry Smith } 428aa482453SBarry Smith #if defined (PETSC_USE_CTABLE) 4290f5bd95cSBarry Smith ierr = PetscTableFind(baij->colmap,in[j]/bs + 1,&col);CHKERRQ(ierr); 430bba1ac68SSatish Balay col = col - 1; 43148e59246SSatish Balay #else 432bba1ac68SSatish Balay col = baij->colmap[in[j]/bs] - 1; 43348e59246SSatish Balay #endif 43457b952d6SSatish Balay if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) { 43557b952d6SSatish Balay ierr = DisAssemble_MPIBAIJ(mat);CHKERRQ(ierr); 4368295de27SSatish Balay col = in[j]; 4379bf004c3SSatish Balay /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */ 4389bf004c3SSatish Balay B = baij->B; 4399bf004c3SSatish Balay b = (Mat_SeqBAIJ*)(B)->data; 4409bf004c3SSatish Balay bimax=b->imax;bi=b->i;bilen=b->ilen;bj=b->j; 4419bf004c3SSatish Balay ba=b->a; 442bba1ac68SSatish Balay } else col += in[j]%bs; 4438295de27SSatish Balay } else col = in[j]; 44457b952d6SSatish Balay if (roworiented) value = v[i*n+j]; else value = v[i+j*m]; 44590da58bdSSatish Balay MatSetValues_SeqBAIJ_B_Private(row,col,value,addv); 44690da58bdSSatish Balay /* ierr = MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 44757b952d6SSatish Balay } 44857b952d6SSatish Balay } 449d64ed03dSBarry Smith } else { 45090f02eecSBarry Smith if (!baij->donotstash) { 451ff2fd236SBarry Smith if (roworiented) { 4526fa18ffdSBarry Smith ierr = MatStashValuesRow_Private(&mat->stash,im[i],n,in,v+i*n);CHKERRQ(ierr); 453ff2fd236SBarry Smith } else { 4546fa18ffdSBarry Smith ierr = MatStashValuesCol_Private(&mat->stash,im[i],n,in,v+i,m);CHKERRQ(ierr); 45557b952d6SSatish Balay } 45657b952d6SSatish Balay } 45757b952d6SSatish Balay } 45890f02eecSBarry Smith } 4593a40ed3dSBarry Smith PetscFunctionReturn(0); 46057b952d6SSatish Balay } 46157b952d6SSatish Balay 4624a2ae208SSatish Balay #undef __FUNCT__ 4634a2ae208SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_MPIBAIJ_MatScalar" 464b24ad042SBarry Smith PetscErrorCode MatSetValuesBlocked_MPIBAIJ_MatScalar(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const MatScalar v[],InsertMode addv) 465ab26458aSBarry Smith { 466ab26458aSBarry Smith Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 467f15d580aSBarry Smith const MatScalar *value; 468f15d580aSBarry Smith MatScalar *barray=baij->barray; 469273d9f13SBarry Smith PetscTruth roworiented = baij->roworiented; 470dfbe8321SBarry Smith PetscErrorCode ierr; 471b24ad042SBarry Smith PetscInt i,j,ii,jj,row,col,rstart=baij->rstart; 472b24ad042SBarry Smith PetscInt rend=baij->rend,cstart=baij->cstart,stepval; 473521d7252SBarry Smith PetscInt cend=baij->cend,bs=mat->bs,bs2=baij->bs2; 474ab26458aSBarry Smith 475b16ae2b1SBarry Smith PetscFunctionBegin; 47630793edcSSatish Balay if(!barray) { 47782502324SSatish Balay ierr = PetscMalloc(bs2*sizeof(MatScalar),&barray);CHKERRQ(ierr); 47882502324SSatish Balay baij->barray = barray; 47930793edcSSatish Balay } 48030793edcSSatish Balay 481ab26458aSBarry Smith if (roworiented) { 482ab26458aSBarry Smith stepval = (n-1)*bs; 483ab26458aSBarry Smith } else { 484ab26458aSBarry Smith stepval = (m-1)*bs; 485ab26458aSBarry Smith } 486ab26458aSBarry Smith for (i=0; i<m; i++) { 4875ef9f2a5SBarry Smith if (im[i] < 0) continue; 4882515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 48977431f27SBarry Smith if (im[i] >= baij->Mbs) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large, row %D max %D",im[i],baij->Mbs-1); 490ab26458aSBarry Smith #endif 491ab26458aSBarry Smith if (im[i] >= rstart && im[i] < rend) { 492ab26458aSBarry Smith row = im[i] - rstart; 493ab26458aSBarry Smith for (j=0; j<n; j++) { 49415b57d14SSatish Balay /* If NumCol = 1 then a copy is not required */ 49515b57d14SSatish Balay if ((roworiented) && (n == 1)) { 496f15d580aSBarry Smith barray = (MatScalar*)v + i*bs2; 49715b57d14SSatish Balay } else if((!roworiented) && (m == 1)) { 498f15d580aSBarry Smith barray = (MatScalar*)v + j*bs2; 49915b57d14SSatish Balay } else { /* Here a copy is required */ 500ab26458aSBarry Smith if (roworiented) { 501ab26458aSBarry Smith value = v + i*(stepval+bs)*bs + j*bs; 502ab26458aSBarry Smith } else { 503ab26458aSBarry Smith value = v + j*(stepval+bs)*bs + i*bs; 504abef11f7SSatish Balay } 50547513183SBarry Smith for (ii=0; ii<bs; ii++,value+=stepval) { 50647513183SBarry Smith for (jj=0; jj<bs; jj++) { 50730793edcSSatish Balay *barray++ = *value++; 50847513183SBarry Smith } 50947513183SBarry Smith } 51030793edcSSatish Balay barray -=bs2; 51115b57d14SSatish Balay } 512abef11f7SSatish Balay 513abef11f7SSatish Balay if (in[j] >= cstart && in[j] < cend){ 514abef11f7SSatish Balay col = in[j] - cstart; 51593fea6afSBarry Smith ierr = MatSetValuesBlocked_SeqBAIJ_MatScalar(baij->A,1,&row,1,&col,barray,addv);CHKERRQ(ierr); 516ab26458aSBarry Smith } 5175ef9f2a5SBarry Smith else if (in[j] < 0) continue; 5182515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 51977431f27SBarry Smith else if (in[j] >= baij->Nbs) {SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large, col %D max %D",in[j],baij->Nbs-1);} 520ab26458aSBarry Smith #endif 521ab26458aSBarry Smith else { 522ab26458aSBarry Smith if (mat->was_assembled) { 523ab26458aSBarry Smith if (!baij->colmap) { 524ab26458aSBarry Smith ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 525ab26458aSBarry Smith } 526a5eb4965SSatish Balay 5272515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 528aa482453SBarry Smith #if defined (PETSC_USE_CTABLE) 529b24ad042SBarry Smith { PetscInt data; 5300f5bd95cSBarry Smith ierr = PetscTableFind(baij->colmap,in[j]+1,&data);CHKERRQ(ierr); 53129bbc08cSBarry Smith if ((data - 1) % bs) SETERRQ(PETSC_ERR_PLIB,"Incorrect colmap"); 532fa46199cSSatish Balay } 53348e59246SSatish Balay #else 53429bbc08cSBarry Smith if ((baij->colmap[in[j]] - 1) % bs) SETERRQ(PETSC_ERR_PLIB,"Incorrect colmap"); 535a5eb4965SSatish Balay #endif 53648e59246SSatish Balay #endif 537aa482453SBarry Smith #if defined (PETSC_USE_CTABLE) 5380f5bd95cSBarry Smith ierr = PetscTableFind(baij->colmap,in[j]+1,&col);CHKERRQ(ierr); 539fa46199cSSatish Balay col = (col - 1)/bs; 54048e59246SSatish Balay #else 541a5eb4965SSatish Balay col = (baij->colmap[in[j]] - 1)/bs; 54248e59246SSatish Balay #endif 543ab26458aSBarry Smith if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) { 544ab26458aSBarry Smith ierr = DisAssemble_MPIBAIJ(mat);CHKERRQ(ierr); 545ab26458aSBarry Smith col = in[j]; 546ab26458aSBarry Smith } 547ab26458aSBarry Smith } 548ab26458aSBarry Smith else col = in[j]; 54993fea6afSBarry Smith ierr = MatSetValuesBlocked_SeqBAIJ_MatScalar(baij->B,1,&row,1,&col,barray,addv);CHKERRQ(ierr); 550ab26458aSBarry Smith } 551ab26458aSBarry Smith } 552d64ed03dSBarry Smith } else { 553ab26458aSBarry Smith if (!baij->donotstash) { 554ff2fd236SBarry Smith if (roworiented) { 5556fa18ffdSBarry Smith ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 556ff2fd236SBarry Smith } else { 5576fa18ffdSBarry Smith ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 558ff2fd236SBarry Smith } 559abef11f7SSatish Balay } 560ab26458aSBarry Smith } 561ab26458aSBarry Smith } 5623a40ed3dSBarry Smith PetscFunctionReturn(0); 563ab26458aSBarry Smith } 5646fa18ffdSBarry Smith 5650bdbc534SSatish Balay #define HASH_KEY 0.6180339887 566b24ad042SBarry Smith #define HASH(size,key,tmp) (tmp = (key)*HASH_KEY,(PetscInt)((size)*(tmp-(PetscInt)tmp))) 567b24ad042SBarry Smith /* #define HASH(size,key) ((PetscInt)((size)*fmod(((key)*HASH_KEY),1))) */ 568b24ad042SBarry Smith /* #define HASH(size,key,tmp) ((PetscInt)((size)*fmod(((key)*HASH_KEY),1))) */ 5694a2ae208SSatish Balay #undef __FUNCT__ 5704a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_MPIBAIJ_HT_MatScalar" 571b24ad042SBarry Smith PetscErrorCode MatSetValues_MPIBAIJ_HT_MatScalar(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const MatScalar v[],InsertMode addv) 5720bdbc534SSatish Balay { 5730bdbc534SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 574273d9f13SBarry Smith PetscTruth roworiented = baij->roworiented; 575dfbe8321SBarry Smith PetscErrorCode ierr; 576b24ad042SBarry Smith PetscInt i,j,row,col; 577b24ad042SBarry Smith PetscInt rstart_orig=baij->rstart_bs; 578b24ad042SBarry Smith PetscInt rend_orig=baij->rend_bs,Nbs=baij->Nbs; 579521d7252SBarry Smith PetscInt h1,key,size=baij->ht_size,bs=mat->bs,*HT=baij->ht,idx; 580329f5518SBarry Smith PetscReal tmp; 5813eda8832SBarry Smith MatScalar **HD = baij->hd,value; 5822515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 583b24ad042SBarry Smith PetscInt total_ct=baij->ht_total_ct,insert_ct=baij->ht_insert_ct; 5844a15367fSSatish Balay #endif 5850bdbc534SSatish Balay 5860bdbc534SSatish Balay PetscFunctionBegin; 5870bdbc534SSatish Balay 5880bdbc534SSatish Balay for (i=0; i<m; i++) { 5892515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 59029bbc08cSBarry Smith if (im[i] < 0) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Negative row"); 59177431f27SBarry Smith if (im[i] >= mat->M) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],mat->M-1); 5920bdbc534SSatish Balay #endif 5930bdbc534SSatish Balay row = im[i]; 594c2760754SSatish Balay if (row >= rstart_orig && row < rend_orig) { 5950bdbc534SSatish Balay for (j=0; j<n; j++) { 5960bdbc534SSatish Balay col = in[j]; 5976fa18ffdSBarry Smith if (roworiented) value = v[i*n+j]; else value = v[i+j*m]; 598b24ad042SBarry Smith /* Look up PetscInto the Hash Table */ 599c2760754SSatish Balay key = (row/bs)*Nbs+(col/bs)+1; 600c2760754SSatish Balay h1 = HASH(size,key,tmp); 6010bdbc534SSatish Balay 602c2760754SSatish Balay 603c2760754SSatish Balay idx = h1; 6042515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 605187ce0cbSSatish Balay insert_ct++; 606187ce0cbSSatish Balay total_ct++; 607187ce0cbSSatish Balay if (HT[idx] != key) { 608187ce0cbSSatish Balay for (idx=h1; (idx<size) && (HT[idx]!=key); idx++,total_ct++); 609187ce0cbSSatish Balay if (idx == size) { 610187ce0cbSSatish Balay for (idx=0; (idx<h1) && (HT[idx]!=key); idx++,total_ct++); 611187ce0cbSSatish Balay if (idx == h1) { 61277431f27SBarry Smith SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"(%D,%D) has no entry in the hash table", row, col); 613187ce0cbSSatish Balay } 614187ce0cbSSatish Balay } 615187ce0cbSSatish Balay } 616187ce0cbSSatish Balay #else 617c2760754SSatish Balay if (HT[idx] != key) { 618c2760754SSatish Balay for (idx=h1; (idx<size) && (HT[idx]!=key); idx++); 619c2760754SSatish Balay if (idx == size) { 620c2760754SSatish Balay for (idx=0; (idx<h1) && (HT[idx]!=key); idx++); 621c2760754SSatish Balay if (idx == h1) { 62277431f27SBarry Smith SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"(%D,%D) has no entry in the hash table", row, col); 623c2760754SSatish Balay } 624c2760754SSatish Balay } 625c2760754SSatish Balay } 626187ce0cbSSatish Balay #endif 627c2760754SSatish Balay /* A HASH table entry is found, so insert the values at the correct address */ 628c2760754SSatish Balay if (addv == ADD_VALUES) *(HD[idx]+ (col % bs)*bs + (row % bs)) += value; 629c2760754SSatish Balay else *(HD[idx]+ (col % bs)*bs + (row % bs)) = value; 6300bdbc534SSatish Balay } 6310bdbc534SSatish Balay } else { 6320bdbc534SSatish Balay if (!baij->donotstash) { 633ff2fd236SBarry Smith if (roworiented) { 6348798bf22SSatish Balay ierr = MatStashValuesRow_Private(&mat->stash,im[i],n,in,v+i*n);CHKERRQ(ierr); 635ff2fd236SBarry Smith } else { 6368798bf22SSatish Balay ierr = MatStashValuesCol_Private(&mat->stash,im[i],n,in,v+i,m);CHKERRQ(ierr); 6370bdbc534SSatish Balay } 6380bdbc534SSatish Balay } 6390bdbc534SSatish Balay } 6400bdbc534SSatish Balay } 6412515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 642187ce0cbSSatish Balay baij->ht_total_ct = total_ct; 643187ce0cbSSatish Balay baij->ht_insert_ct = insert_ct; 644187ce0cbSSatish Balay #endif 6450bdbc534SSatish Balay PetscFunctionReturn(0); 6460bdbc534SSatish Balay } 6470bdbc534SSatish Balay 6484a2ae208SSatish Balay #undef __FUNCT__ 6494a2ae208SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_MPIBAIJ_HT_MatScalar" 650b24ad042SBarry Smith PetscErrorCode MatSetValuesBlocked_MPIBAIJ_HT_MatScalar(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const MatScalar v[],InsertMode addv) 6510bdbc534SSatish Balay { 6520bdbc534SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 653273d9f13SBarry Smith PetscTruth roworiented = baij->roworiented; 654dfbe8321SBarry Smith PetscErrorCode ierr; 655b24ad042SBarry Smith PetscInt i,j,ii,jj,row,col; 656b24ad042SBarry Smith PetscInt rstart=baij->rstart ; 657521d7252SBarry Smith PetscInt rend=baij->rend,stepval,bs=mat->bs,bs2=baij->bs2; 658b24ad042SBarry Smith PetscInt h1,key,size=baij->ht_size,idx,*HT=baij->ht,Nbs=baij->Nbs; 659329f5518SBarry Smith PetscReal tmp; 6603eda8832SBarry Smith MatScalar **HD = baij->hd,*baij_a; 661f15d580aSBarry Smith const MatScalar *v_t,*value; 6622515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 663b24ad042SBarry Smith PetscInt total_ct=baij->ht_total_ct,insert_ct=baij->ht_insert_ct; 6644a15367fSSatish Balay #endif 6650bdbc534SSatish Balay 666d0a41580SSatish Balay PetscFunctionBegin; 667d0a41580SSatish Balay 6680bdbc534SSatish Balay if (roworiented) { 6690bdbc534SSatish Balay stepval = (n-1)*bs; 6700bdbc534SSatish Balay } else { 6710bdbc534SSatish Balay stepval = (m-1)*bs; 6720bdbc534SSatish Balay } 6730bdbc534SSatish Balay for (i=0; i<m; i++) { 6742515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 67577431f27SBarry Smith if (im[i] < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %D",im[i]); 67677431f27SBarry Smith if (im[i] >= baij->Mbs) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],baij->Mbs-1); 6770bdbc534SSatish Balay #endif 6780bdbc534SSatish Balay row = im[i]; 679187ce0cbSSatish Balay v_t = v + i*bs2; 680c2760754SSatish Balay if (row >= rstart && row < rend) { 6810bdbc534SSatish Balay for (j=0; j<n; j++) { 6820bdbc534SSatish Balay col = in[j]; 6830bdbc534SSatish Balay 6840bdbc534SSatish Balay /* Look up into the Hash Table */ 685c2760754SSatish Balay key = row*Nbs+col+1; 686c2760754SSatish Balay h1 = HASH(size,key,tmp); 6870bdbc534SSatish Balay 688c2760754SSatish Balay idx = h1; 6892515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 690187ce0cbSSatish Balay total_ct++; 691187ce0cbSSatish Balay insert_ct++; 692187ce0cbSSatish Balay if (HT[idx] != key) { 693187ce0cbSSatish Balay for (idx=h1; (idx<size) && (HT[idx]!=key); idx++,total_ct++); 694187ce0cbSSatish Balay if (idx == size) { 695187ce0cbSSatish Balay for (idx=0; (idx<h1) && (HT[idx]!=key); idx++,total_ct++); 696187ce0cbSSatish Balay if (idx == h1) { 69777431f27SBarry Smith SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"(%D,%D) has no entry in the hash table", row, col); 698187ce0cbSSatish Balay } 699187ce0cbSSatish Balay } 700187ce0cbSSatish Balay } 701187ce0cbSSatish Balay #else 702c2760754SSatish Balay if (HT[idx] != key) { 703c2760754SSatish Balay for (idx=h1; (idx<size) && (HT[idx]!=key); idx++); 704c2760754SSatish Balay if (idx == size) { 705c2760754SSatish Balay for (idx=0; (idx<h1) && (HT[idx]!=key); idx++); 706c2760754SSatish Balay if (idx == h1) { 70777431f27SBarry Smith SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"(%D,%D) has no entry in the hash table", row, col); 708c2760754SSatish Balay } 709c2760754SSatish Balay } 710c2760754SSatish Balay } 711187ce0cbSSatish Balay #endif 712c2760754SSatish Balay baij_a = HD[idx]; 7130bdbc534SSatish Balay if (roworiented) { 714c2760754SSatish Balay /*value = v + i*(stepval+bs)*bs + j*bs;*/ 715187ce0cbSSatish Balay /* value = v + (i*(stepval+bs)+j)*bs; */ 716187ce0cbSSatish Balay value = v_t; 717187ce0cbSSatish Balay v_t += bs; 718fef45726SSatish Balay if (addv == ADD_VALUES) { 719c2760754SSatish Balay for (ii=0; ii<bs; ii++,value+=stepval) { 720c2760754SSatish Balay for (jj=ii; jj<bs2; jj+=bs) { 721fef45726SSatish Balay baij_a[jj] += *value++; 722b4cc0f5aSSatish Balay } 723b4cc0f5aSSatish Balay } 724fef45726SSatish Balay } else { 725c2760754SSatish Balay for (ii=0; ii<bs; ii++,value+=stepval) { 726c2760754SSatish Balay for (jj=ii; jj<bs2; jj+=bs) { 727fef45726SSatish Balay baij_a[jj] = *value++; 728fef45726SSatish Balay } 729fef45726SSatish Balay } 730fef45726SSatish Balay } 7310bdbc534SSatish Balay } else { 7320bdbc534SSatish Balay value = v + j*(stepval+bs)*bs + i*bs; 733fef45726SSatish Balay if (addv == ADD_VALUES) { 734b4cc0f5aSSatish Balay for (ii=0; ii<bs; ii++,value+=stepval,baij_a+=bs) { 7350bdbc534SSatish Balay for (jj=0; jj<bs; jj++) { 736fef45726SSatish Balay baij_a[jj] += *value++; 737fef45726SSatish Balay } 738fef45726SSatish Balay } 739fef45726SSatish Balay } else { 740fef45726SSatish Balay for (ii=0; ii<bs; ii++,value+=stepval,baij_a+=bs) { 741fef45726SSatish Balay for (jj=0; jj<bs; jj++) { 742fef45726SSatish Balay baij_a[jj] = *value++; 743fef45726SSatish Balay } 744b4cc0f5aSSatish Balay } 7450bdbc534SSatish Balay } 7460bdbc534SSatish Balay } 7470bdbc534SSatish Balay } 7480bdbc534SSatish Balay } else { 7490bdbc534SSatish Balay if (!baij->donotstash) { 7500bdbc534SSatish Balay if (roworiented) { 7518798bf22SSatish Balay ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 7520bdbc534SSatish Balay } else { 7538798bf22SSatish Balay ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 7540bdbc534SSatish Balay } 7550bdbc534SSatish Balay } 7560bdbc534SSatish Balay } 7570bdbc534SSatish Balay } 7582515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 759187ce0cbSSatish Balay baij->ht_total_ct = total_ct; 760187ce0cbSSatish Balay baij->ht_insert_ct = insert_ct; 761187ce0cbSSatish Balay #endif 7620bdbc534SSatish Balay PetscFunctionReturn(0); 7630bdbc534SSatish Balay } 764133cdb44SSatish Balay 7654a2ae208SSatish Balay #undef __FUNCT__ 7664a2ae208SSatish Balay #define __FUNCT__ "MatGetValues_MPIBAIJ" 767b24ad042SBarry Smith PetscErrorCode MatGetValues_MPIBAIJ(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[]) 768d6de1c52SSatish Balay { 769d6de1c52SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 7706849ba73SBarry Smith PetscErrorCode ierr; 771521d7252SBarry Smith PetscInt bs=mat->bs,i,j,bsrstart = baij->rstart*bs,bsrend = baij->rend*bs; 772b24ad042SBarry Smith PetscInt bscstart = baij->cstart*bs,bscend = baij->cend*bs,row,col,data; 773d6de1c52SSatish Balay 774133cdb44SSatish Balay PetscFunctionBegin; 775d6de1c52SSatish Balay for (i=0; i<m; i++) { 77677431f27SBarry Smith if (idxm[i] < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %D",idxm[i]); 77777431f27SBarry Smith if (idxm[i] >= mat->M) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",idxm[i],mat->M-1); 778d6de1c52SSatish Balay if (idxm[i] >= bsrstart && idxm[i] < bsrend) { 779d6de1c52SSatish Balay row = idxm[i] - bsrstart; 780d6de1c52SSatish Balay for (j=0; j<n; j++) { 78177431f27SBarry Smith if (idxn[j] < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Negative column: %D",idxn[j]); 78277431f27SBarry Smith if (idxn[j] >= mat->N) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",idxn[j],mat->N-1); 783d6de1c52SSatish Balay if (idxn[j] >= bscstart && idxn[j] < bscend){ 784d6de1c52SSatish Balay col = idxn[j] - bscstart; 78598dd23e9SBarry Smith ierr = MatGetValues_SeqBAIJ(baij->A,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr); 786d64ed03dSBarry Smith } else { 787905e6a2fSBarry Smith if (!baij->colmap) { 788905e6a2fSBarry Smith ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 789905e6a2fSBarry Smith } 790aa482453SBarry Smith #if defined (PETSC_USE_CTABLE) 7910f5bd95cSBarry Smith ierr = PetscTableFind(baij->colmap,idxn[j]/bs+1,&data);CHKERRQ(ierr); 792fa46199cSSatish Balay data --; 79348e59246SSatish Balay #else 79448e59246SSatish Balay data = baij->colmap[idxn[j]/bs]-1; 79548e59246SSatish Balay #endif 79648e59246SSatish Balay if((data < 0) || (baij->garray[data/bs] != idxn[j]/bs)) *(v+i*n+j) = 0.0; 797d9d09a02SSatish Balay else { 79848e59246SSatish Balay col = data + idxn[j]%bs; 79998dd23e9SBarry Smith ierr = MatGetValues_SeqBAIJ(baij->B,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr); 800d6de1c52SSatish Balay } 801d6de1c52SSatish Balay } 802d6de1c52SSatish Balay } 803d64ed03dSBarry Smith } else { 80429bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"Only local values currently supported"); 805d6de1c52SSatish Balay } 806d6de1c52SSatish Balay } 8073a40ed3dSBarry Smith PetscFunctionReturn(0); 808d6de1c52SSatish Balay } 809d6de1c52SSatish Balay 8104a2ae208SSatish Balay #undef __FUNCT__ 8114a2ae208SSatish Balay #define __FUNCT__ "MatNorm_MPIBAIJ" 812dfbe8321SBarry Smith PetscErrorCode MatNorm_MPIBAIJ(Mat mat,NormType type,PetscReal *nrm) 813d6de1c52SSatish Balay { 814d6de1c52SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 815d6de1c52SSatish Balay Mat_SeqBAIJ *amat = (Mat_SeqBAIJ*)baij->A->data,*bmat = (Mat_SeqBAIJ*)baij->B->data; 816dfbe8321SBarry Smith PetscErrorCode ierr; 8178a62d963SHong Zhang PetscInt i,j,bs2=baij->bs2,bs=baij->A->bs,nz,row,col; 818329f5518SBarry Smith PetscReal sum = 0.0; 8193eda8832SBarry Smith MatScalar *v; 820d6de1c52SSatish Balay 821d64ed03dSBarry Smith PetscFunctionBegin; 822d6de1c52SSatish Balay if (baij->size == 1) { 823064f8208SBarry Smith ierr = MatNorm(baij->A,type,nrm);CHKERRQ(ierr); 824d6de1c52SSatish Balay } else { 825d6de1c52SSatish Balay if (type == NORM_FROBENIUS) { 826d6de1c52SSatish Balay v = amat->a; 8278a62d963SHong Zhang nz = amat->nz*bs2; 8288a62d963SHong Zhang for (i=0; i<nz; i++) { 829aa482453SBarry Smith #if defined(PETSC_USE_COMPLEX) 830329f5518SBarry Smith sum += PetscRealPart(PetscConj(*v)*(*v)); v++; 831d6de1c52SSatish Balay #else 832d6de1c52SSatish Balay sum += (*v)*(*v); v++; 833d6de1c52SSatish Balay #endif 834d6de1c52SSatish Balay } 835d6de1c52SSatish Balay v = bmat->a; 8368a62d963SHong Zhang nz = bmat->nz*bs2; 8378a62d963SHong Zhang for (i=0; i<nz; i++) { 838aa482453SBarry Smith #if defined(PETSC_USE_COMPLEX) 839329f5518SBarry Smith sum += PetscRealPart(PetscConj(*v)*(*v)); v++; 840d6de1c52SSatish Balay #else 841d6de1c52SSatish Balay sum += (*v)*(*v); v++; 842d6de1c52SSatish Balay #endif 843d6de1c52SSatish Balay } 844064f8208SBarry Smith ierr = MPI_Allreduce(&sum,nrm,1,MPIU_REAL,MPI_SUM,mat->comm);CHKERRQ(ierr); 845064f8208SBarry Smith *nrm = sqrt(*nrm); 8468a62d963SHong Zhang } else if (type == NORM_1) { /* max column sum */ 8478a62d963SHong Zhang PetscReal *tmp,*tmp2; 8488a62d963SHong Zhang PetscInt *jj,*garray=baij->garray,cstart=baij->cstart; 8498a62d963SHong Zhang ierr = PetscMalloc((2*mat->N+1)*sizeof(PetscReal),&tmp);CHKERRQ(ierr); 8508a62d963SHong Zhang tmp2 = tmp + mat->N; 8518a62d963SHong Zhang ierr = PetscMemzero(tmp,mat->N*sizeof(PetscReal));CHKERRQ(ierr); 8528a62d963SHong Zhang v = amat->a; jj = amat->j; 8538a62d963SHong Zhang for (i=0; i<amat->nz; i++) { 8548a62d963SHong Zhang for (j=0; j<bs; j++){ 8558a62d963SHong Zhang col = bs*(cstart + *jj) + j; /* column index */ 8568a62d963SHong Zhang for (row=0; row<bs; row++){ 8578a62d963SHong Zhang tmp[col] += PetscAbsScalar(*v); v++; 8588a62d963SHong Zhang } 8598a62d963SHong Zhang } 8608a62d963SHong Zhang jj++; 8618a62d963SHong Zhang } 8628a62d963SHong Zhang v = bmat->a; jj = bmat->j; 8638a62d963SHong Zhang for (i=0; i<bmat->nz; i++) { 8648a62d963SHong Zhang for (j=0; j<bs; j++){ 8658a62d963SHong Zhang col = bs*garray[*jj] + j; 8668a62d963SHong Zhang for (row=0; row<bs; row++){ 8678a62d963SHong Zhang tmp[col] += PetscAbsScalar(*v); v++; 8688a62d963SHong Zhang } 8698a62d963SHong Zhang } 8708a62d963SHong Zhang jj++; 8718a62d963SHong Zhang } 8728a62d963SHong Zhang ierr = MPI_Allreduce(tmp,tmp2,mat->N,MPIU_REAL,MPI_SUM,mat->comm);CHKERRQ(ierr); 8738a62d963SHong Zhang *nrm = 0.0; 8748a62d963SHong Zhang for (j=0; j<mat->N; j++) { 8758a62d963SHong Zhang if (tmp2[j] > *nrm) *nrm = tmp2[j]; 8768a62d963SHong Zhang } 8778a62d963SHong Zhang ierr = PetscFree(tmp);CHKERRQ(ierr); 8788a62d963SHong Zhang } else if (type == NORM_INFINITY) { /* max row sum */ 879*577dd1f9SKris Buschelman PetscReal *sums; 880*577dd1f9SKris Buschelman ierr = PetscMalloc(bs*sizeof(PetscReal),&sums);CHKERRQ(ierr) 8818a62d963SHong Zhang sum = 0.0; 8828a62d963SHong Zhang for (j=0; j<amat->mbs; j++) { 8838a62d963SHong Zhang for (row=0; row<bs; row++) sums[row] = 0.0; 8848a62d963SHong Zhang v = amat->a + bs2*amat->i[j]; 8858a62d963SHong Zhang nz = amat->i[j+1]-amat->i[j]; 8868a62d963SHong Zhang for (i=0; i<nz; i++) { 8878a62d963SHong Zhang for (col=0; col<bs; col++){ 8888a62d963SHong Zhang for (row=0; row<bs; row++){ 8898a62d963SHong Zhang sums[row] += PetscAbsScalar(*v); v++; 8908a62d963SHong Zhang } 8918a62d963SHong Zhang } 8928a62d963SHong Zhang } 8938a62d963SHong Zhang v = bmat->a + bs2*bmat->i[j]; 8948a62d963SHong Zhang nz = bmat->i[j+1]-bmat->i[j]; 8958a62d963SHong Zhang for (i=0; i<nz; i++) { 8968a62d963SHong Zhang for (col=0; col<bs; col++){ 8978a62d963SHong Zhang for (row=0; row<bs; row++){ 8988a62d963SHong Zhang sums[row] += PetscAbsScalar(*v); v++; 8998a62d963SHong Zhang } 9008a62d963SHong Zhang } 9018a62d963SHong Zhang } 9028a62d963SHong Zhang for (row=0; row<bs; row++){ 9038a62d963SHong Zhang if (sums[row] > sum) sum = sums[row]; 9048a62d963SHong Zhang } 9058a62d963SHong Zhang } 9068a62d963SHong Zhang ierr = MPI_Allreduce(&sum,nrm,1,MPIU_REAL,MPI_MAX,mat->comm);CHKERRQ(ierr); 907*577dd1f9SKris Buschelman ierr = PetscFree(sums);CHKERRQ(ierr); 908d64ed03dSBarry Smith } else { 90929bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"No support for this norm yet"); 910d6de1c52SSatish Balay } 911d64ed03dSBarry Smith } 9123a40ed3dSBarry Smith PetscFunctionReturn(0); 913d6de1c52SSatish Balay } 91457b952d6SSatish Balay 915fef45726SSatish Balay /* 916fef45726SSatish Balay Creates the hash table, and sets the table 917fef45726SSatish Balay This table is created only once. 918fef45726SSatish Balay If new entried need to be added to the matrix 919fef45726SSatish Balay then the hash table has to be destroyed and 920fef45726SSatish Balay recreated. 921fef45726SSatish Balay */ 9224a2ae208SSatish Balay #undef __FUNCT__ 9234a2ae208SSatish Balay #define __FUNCT__ "MatCreateHashTable_MPIBAIJ_Private" 924dfbe8321SBarry Smith PetscErrorCode MatCreateHashTable_MPIBAIJ_Private(Mat mat,PetscReal factor) 925596b8d2eSBarry Smith { 926596b8d2eSBarry Smith Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 927596b8d2eSBarry Smith Mat A = baij->A,B=baij->B; 928596b8d2eSBarry Smith Mat_SeqBAIJ *a=(Mat_SeqBAIJ *)A->data,*b=(Mat_SeqBAIJ *)B->data; 929b24ad042SBarry Smith PetscInt i,j,k,nz=a->nz+b->nz,h1,*ai=a->i,*aj=a->j,*bi=b->i,*bj=b->j; 9306849ba73SBarry Smith PetscErrorCode ierr; 931b24ad042SBarry Smith PetscInt size,bs2=baij->bs2,rstart=baij->rstart; 932b24ad042SBarry Smith PetscInt cstart=baij->cstart,*garray=baij->garray,row,col,Nbs=baij->Nbs; 933b24ad042SBarry Smith PetscInt *HT,key; 9343eda8832SBarry Smith MatScalar **HD; 935329f5518SBarry Smith PetscReal tmp; 9362515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 937b24ad042SBarry Smith PetscInt ct=0,max=0; 9384a15367fSSatish Balay #endif 939fef45726SSatish Balay 940d64ed03dSBarry Smith PetscFunctionBegin; 941b24ad042SBarry Smith baij->ht_size=(PetscInt)(factor*nz); 9420bdbc534SSatish Balay size = baij->ht_size; 943fef45726SSatish Balay 9440bdbc534SSatish Balay if (baij->ht) { 9450bdbc534SSatish Balay PetscFunctionReturn(0); 946596b8d2eSBarry Smith } 9470bdbc534SSatish Balay 948fef45726SSatish Balay /* Allocate Memory for Hash Table */ 949b24ad042SBarry Smith ierr = PetscMalloc((size)*(sizeof(PetscInt)+sizeof(MatScalar*))+1,&baij->hd);CHKERRQ(ierr); 950b24ad042SBarry Smith baij->ht = (PetscInt*)(baij->hd + size); 951b9e4cc15SSatish Balay HD = baij->hd; 952a07cd24cSSatish Balay HT = baij->ht; 953b9e4cc15SSatish Balay 954b9e4cc15SSatish Balay 955b24ad042SBarry Smith ierr = PetscMemzero(HD,size*(sizeof(PetscInt)+sizeof(PetscScalar*)));CHKERRQ(ierr); 9560bdbc534SSatish Balay 957596b8d2eSBarry Smith 958596b8d2eSBarry Smith /* Loop Over A */ 9590bdbc534SSatish Balay for (i=0; i<a->mbs; i++) { 960596b8d2eSBarry Smith for (j=ai[i]; j<ai[i+1]; j++) { 9610bdbc534SSatish Balay row = i+rstart; 9620bdbc534SSatish Balay col = aj[j]+cstart; 963596b8d2eSBarry Smith 964187ce0cbSSatish Balay key = row*Nbs + col + 1; 965c2760754SSatish Balay h1 = HASH(size,key,tmp); 9660bdbc534SSatish Balay for (k=0; k<size; k++){ 967958c9bccSBarry Smith if (!HT[(h1+k)%size]) { 9680bdbc534SSatish Balay HT[(h1+k)%size] = key; 9690bdbc534SSatish Balay HD[(h1+k)%size] = a->a + j*bs2; 970596b8d2eSBarry Smith break; 9712515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 972187ce0cbSSatish Balay } else { 973187ce0cbSSatish Balay ct++; 974187ce0cbSSatish Balay #endif 975596b8d2eSBarry Smith } 976187ce0cbSSatish Balay } 9772515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 978187ce0cbSSatish Balay if (k> max) max = k; 979187ce0cbSSatish Balay #endif 980596b8d2eSBarry Smith } 981596b8d2eSBarry Smith } 982596b8d2eSBarry Smith /* Loop Over B */ 9830bdbc534SSatish Balay for (i=0; i<b->mbs; i++) { 984596b8d2eSBarry Smith for (j=bi[i]; j<bi[i+1]; j++) { 9850bdbc534SSatish Balay row = i+rstart; 9860bdbc534SSatish Balay col = garray[bj[j]]; 987187ce0cbSSatish Balay key = row*Nbs + col + 1; 988c2760754SSatish Balay h1 = HASH(size,key,tmp); 9890bdbc534SSatish Balay for (k=0; k<size; k++){ 990958c9bccSBarry Smith if (!HT[(h1+k)%size]) { 9910bdbc534SSatish Balay HT[(h1+k)%size] = key; 9920bdbc534SSatish Balay HD[(h1+k)%size] = b->a + j*bs2; 993596b8d2eSBarry Smith break; 9942515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 995187ce0cbSSatish Balay } else { 996187ce0cbSSatish Balay ct++; 997187ce0cbSSatish Balay #endif 998596b8d2eSBarry Smith } 999187ce0cbSSatish Balay } 10002515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 1001187ce0cbSSatish Balay if (k> max) max = k; 1002187ce0cbSSatish Balay #endif 1003596b8d2eSBarry Smith } 1004596b8d2eSBarry Smith } 1005596b8d2eSBarry Smith 1006596b8d2eSBarry Smith /* Print Summary */ 10072515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 1008c38d4ed2SBarry Smith for (i=0,j=0; i<size; i++) { 1009596b8d2eSBarry Smith if (HT[i]) {j++;} 1010c38d4ed2SBarry Smith } 101163ba0a88SBarry Smith ierr = PetscLogInfo((0,"MatCreateHashTable_MPIBAIJ_Private: Average Search = %5.2f,max search = %D\n",(!j)? 0.0:((PetscReal)(ct+j))/j,max));CHKERRQ(ierr); 1012187ce0cbSSatish Balay #endif 10133a40ed3dSBarry Smith PetscFunctionReturn(0); 1014596b8d2eSBarry Smith } 101557b952d6SSatish Balay 10164a2ae208SSatish Balay #undef __FUNCT__ 10174a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyBegin_MPIBAIJ" 1018dfbe8321SBarry Smith PetscErrorCode MatAssemblyBegin_MPIBAIJ(Mat mat,MatAssemblyType mode) 1019bbb85fb3SSatish Balay { 1020bbb85fb3SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 1021dfbe8321SBarry Smith PetscErrorCode ierr; 1022b24ad042SBarry Smith PetscInt nstash,reallocs; 1023bbb85fb3SSatish Balay InsertMode addv; 1024bbb85fb3SSatish Balay 1025bbb85fb3SSatish Balay PetscFunctionBegin; 1026bbb85fb3SSatish Balay if (baij->donotstash) { 1027bbb85fb3SSatish Balay PetscFunctionReturn(0); 1028bbb85fb3SSatish Balay } 1029bbb85fb3SSatish Balay 1030bbb85fb3SSatish Balay /* make sure all processors are either in INSERTMODE or ADDMODE */ 1031bbb85fb3SSatish Balay ierr = MPI_Allreduce(&mat->insertmode,&addv,1,MPI_INT,MPI_BOR,mat->comm);CHKERRQ(ierr); 1032bbb85fb3SSatish Balay if (addv == (ADD_VALUES|INSERT_VALUES)) { 103329bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Some processors inserted others added"); 1034bbb85fb3SSatish Balay } 1035bbb85fb3SSatish Balay mat->insertmode = addv; /* in case this processor had no cache */ 1036bbb85fb3SSatish Balay 10378798bf22SSatish Balay ierr = MatStashScatterBegin_Private(&mat->stash,baij->rowners_bs);CHKERRQ(ierr); 10388798bf22SSatish Balay ierr = MatStashScatterBegin_Private(&mat->bstash,baij->rowners);CHKERRQ(ierr); 10398798bf22SSatish Balay ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr); 104063ba0a88SBarry Smith ierr = PetscLogInfo((0,"MatAssemblyBegin_MPIBAIJ:Stash has %D entries,uses %D mallocs.\n",nstash,reallocs));CHKERRQ(ierr); 104146680499SSatish Balay ierr = MatStashGetInfo_Private(&mat->bstash,&nstash,&reallocs);CHKERRQ(ierr); 104263ba0a88SBarry Smith ierr = PetscLogInfo((0,"MatAssemblyBegin_MPIBAIJ:Block-Stash has %D entries, uses %D mallocs.\n",nstash,reallocs));CHKERRQ(ierr); 1043bbb85fb3SSatish Balay PetscFunctionReturn(0); 1044bbb85fb3SSatish Balay } 1045bbb85fb3SSatish Balay 10464a2ae208SSatish Balay #undef __FUNCT__ 10474a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyEnd_MPIBAIJ" 1048dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_MPIBAIJ(Mat mat,MatAssemblyType mode) 1049bbb85fb3SSatish Balay { 1050bbb85fb3SSatish Balay Mat_MPIBAIJ *baij=(Mat_MPIBAIJ*)mat->data; 1051a2d1c673SSatish Balay Mat_SeqBAIJ *a=(Mat_SeqBAIJ*)baij->A->data,*b=(Mat_SeqBAIJ*)baij->B->data; 10526849ba73SBarry Smith PetscErrorCode ierr; 1053b24ad042SBarry Smith PetscInt i,j,rstart,ncols,flg,bs2=baij->bs2; 1054b24ad042SBarry Smith PetscInt *row,*col,other_disassembled; 10557c922b88SBarry Smith PetscTruth r1,r2,r3; 10563eda8832SBarry Smith MatScalar *val; 1057bbb85fb3SSatish Balay InsertMode addv = mat->insertmode; 1058b24ad042SBarry Smith PetscMPIInt n; 1059bbb85fb3SSatish Balay 1060bbb85fb3SSatish Balay PetscFunctionBegin; 1061bbb85fb3SSatish Balay if (!baij->donotstash) { 1062a2d1c673SSatish Balay while (1) { 10638798bf22SSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 1064a2d1c673SSatish Balay if (!flg) break; 1065a2d1c673SSatish Balay 1066bbb85fb3SSatish Balay for (i=0; i<n;) { 1067bbb85fb3SSatish Balay /* Now identify the consecutive vals belonging to the same row */ 1068bbb85fb3SSatish Balay for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; } 1069bbb85fb3SSatish Balay if (j < n) ncols = j-i; 1070bbb85fb3SSatish Balay else ncols = n-i; 1071bbb85fb3SSatish Balay /* Now assemble all these values with a single function call */ 107293fea6afSBarry Smith ierr = MatSetValues_MPIBAIJ_MatScalar(mat,1,row+i,ncols,col+i,val+i,addv);CHKERRQ(ierr); 1073bbb85fb3SSatish Balay i = j; 1074bbb85fb3SSatish Balay } 1075bbb85fb3SSatish Balay } 10768798bf22SSatish Balay ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr); 1077a2d1c673SSatish Balay /* Now process the block-stash. Since the values are stashed column-oriented, 1078a2d1c673SSatish Balay set the roworiented flag to column oriented, and after MatSetValues() 1079a2d1c673SSatish Balay restore the original flags */ 1080a2d1c673SSatish Balay r1 = baij->roworiented; 1081a2d1c673SSatish Balay r2 = a->roworiented; 1082a2d1c673SSatish Balay r3 = b->roworiented; 10837c922b88SBarry Smith baij->roworiented = PETSC_FALSE; 10847c922b88SBarry Smith a->roworiented = PETSC_FALSE; 10857c922b88SBarry Smith b->roworiented = PETSC_FALSE; 1086a2d1c673SSatish Balay while (1) { 10878798bf22SSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->bstash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 1088a2d1c673SSatish Balay if (!flg) break; 1089a2d1c673SSatish Balay 1090a2d1c673SSatish Balay for (i=0; i<n;) { 1091a2d1c673SSatish Balay /* Now identify the consecutive vals belonging to the same row */ 1092a2d1c673SSatish Balay for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; } 1093a2d1c673SSatish Balay if (j < n) ncols = j-i; 1094a2d1c673SSatish Balay else ncols = n-i; 109593fea6afSBarry Smith ierr = MatSetValuesBlocked_MPIBAIJ_MatScalar(mat,1,row+i,ncols,col+i,val+i*bs2,addv);CHKERRQ(ierr); 1096a2d1c673SSatish Balay i = j; 1097a2d1c673SSatish Balay } 1098a2d1c673SSatish Balay } 10998798bf22SSatish Balay ierr = MatStashScatterEnd_Private(&mat->bstash);CHKERRQ(ierr); 1100a2d1c673SSatish Balay baij->roworiented = r1; 1101a2d1c673SSatish Balay a->roworiented = r2; 1102a2d1c673SSatish Balay b->roworiented = r3; 1103bbb85fb3SSatish Balay } 1104bbb85fb3SSatish Balay 1105bbb85fb3SSatish Balay ierr = MatAssemblyBegin(baij->A,mode);CHKERRQ(ierr); 1106bbb85fb3SSatish Balay ierr = MatAssemblyEnd(baij->A,mode);CHKERRQ(ierr); 1107bbb85fb3SSatish Balay 1108bbb85fb3SSatish Balay /* determine if any processor has disassembled, if so we must 1109bbb85fb3SSatish Balay also disassemble ourselfs, in order that we may reassemble. */ 1110bbb85fb3SSatish Balay /* 1111bbb85fb3SSatish Balay if nonzero structure of submatrix B cannot change then we know that 1112bbb85fb3SSatish Balay no processor disassembled thus we can skip this stuff 1113bbb85fb3SSatish Balay */ 1114bbb85fb3SSatish Balay if (!((Mat_SeqBAIJ*)baij->B->data)->nonew) { 1115bbb85fb3SSatish Balay ierr = MPI_Allreduce(&mat->was_assembled,&other_disassembled,1,MPI_INT,MPI_PROD,mat->comm);CHKERRQ(ierr); 1116bbb85fb3SSatish Balay if (mat->was_assembled && !other_disassembled) { 1117bbb85fb3SSatish Balay ierr = DisAssemble_MPIBAIJ(mat);CHKERRQ(ierr); 1118bbb85fb3SSatish Balay } 1119bbb85fb3SSatish Balay } 1120bbb85fb3SSatish Balay 1121bbb85fb3SSatish Balay if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) { 1122bbb85fb3SSatish Balay ierr = MatSetUpMultiply_MPIBAIJ(mat);CHKERRQ(ierr); 1123bbb85fb3SSatish Balay } 112473e7a558SHong Zhang b->compressedrow.use = PETSC_TRUE; 1125bbb85fb3SSatish Balay ierr = MatAssemblyBegin(baij->B,mode);CHKERRQ(ierr); 1126bbb85fb3SSatish Balay ierr = MatAssemblyEnd(baij->B,mode);CHKERRQ(ierr); 1127bbb85fb3SSatish Balay 11282515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 1129bbb85fb3SSatish Balay if (baij->ht && mode== MAT_FINAL_ASSEMBLY) { 113063ba0a88SBarry Smith ierr = PetscLogInfo((0,"MatAssemblyEnd_MPIBAIJ:Average Hash Table Search in MatSetValues = %5.2f\n",((PetscReal)baij->ht_total_ct)/baij->ht_insert_ct));CHKERRQ(ierr); 1131bbb85fb3SSatish Balay baij->ht_total_ct = 0; 1132bbb85fb3SSatish Balay baij->ht_insert_ct = 0; 1133bbb85fb3SSatish Balay } 1134bbb85fb3SSatish Balay #endif 1135bbb85fb3SSatish Balay if (baij->ht_flag && !baij->ht && mode == MAT_FINAL_ASSEMBLY) { 1136bbb85fb3SSatish Balay ierr = MatCreateHashTable_MPIBAIJ_Private(mat,baij->ht_fact);CHKERRQ(ierr); 1137bbb85fb3SSatish Balay mat->ops->setvalues = MatSetValues_MPIBAIJ_HT; 1138bbb85fb3SSatish Balay mat->ops->setvaluesblocked = MatSetValuesBlocked_MPIBAIJ_HT; 1139bbb85fb3SSatish Balay } 1140bbb85fb3SSatish Balay 1141606d414cSSatish Balay if (baij->rowvalues) { 1142606d414cSSatish Balay ierr = PetscFree(baij->rowvalues);CHKERRQ(ierr); 1143606d414cSSatish Balay baij->rowvalues = 0; 1144606d414cSSatish Balay } 1145bbb85fb3SSatish Balay PetscFunctionReturn(0); 1146bbb85fb3SSatish Balay } 114757b952d6SSatish Balay 11484a2ae208SSatish Balay #undef __FUNCT__ 11494a2ae208SSatish Balay #define __FUNCT__ "MatView_MPIBAIJ_ASCIIorDraworSocket" 11506849ba73SBarry Smith static PetscErrorCode MatView_MPIBAIJ_ASCIIorDraworSocket(Mat mat,PetscViewer viewer) 115157b952d6SSatish Balay { 115257b952d6SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 1153dfbe8321SBarry Smith PetscErrorCode ierr; 1154b24ad042SBarry Smith PetscMPIInt size = baij->size,rank = baij->rank; 1155521d7252SBarry Smith PetscInt bs = mat->bs; 115632077d6dSBarry Smith PetscTruth iascii,isdraw; 1157b0a32e0cSBarry Smith PetscViewer sviewer; 1158f3ef73ceSBarry Smith PetscViewerFormat format; 115957b952d6SSatish Balay 1160d64ed03dSBarry Smith PetscFunctionBegin; 1161f81bd7ccSHong Zhang /* printf(" MatView_MPIBAIJ_ASCIIorDraworSocket is called ...\n"); */ 116232077d6dSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&iascii);CHKERRQ(ierr); 1163fb9695e5SSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr); 116432077d6dSBarry Smith if (iascii) { 1165b0a32e0cSBarry Smith ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr); 1166456192e2SBarry Smith if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 11674e220ebcSLois Curfman McInnes MatInfo info; 1168d132466eSBarry Smith ierr = MPI_Comm_rank(mat->comm,&rank);CHKERRQ(ierr); 1169d41123aaSBarry Smith ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr); 117077431f27SBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Local rows %D nz %D nz alloced %D bs %D mem %D\n", 117177431f27SBarry Smith rank,mat->m,(PetscInt)info.nz_used*bs,(PetscInt)info.nz_allocated*bs, 1172521d7252SBarry Smith mat->bs,(PetscInt)info.memory);CHKERRQ(ierr); 1173d132466eSBarry Smith ierr = MatGetInfo(baij->A,MAT_LOCAL,&info);CHKERRQ(ierr); 117477431f27SBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] on-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used*bs);CHKERRQ(ierr); 1175d132466eSBarry Smith ierr = MatGetInfo(baij->B,MAT_LOCAL,&info);CHKERRQ(ierr); 117677431f27SBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] off-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used*bs);CHKERRQ(ierr); 1177b0a32e0cSBarry Smith ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 117857b952d6SSatish Balay ierr = VecScatterView(baij->Mvctx,viewer);CHKERRQ(ierr); 11793a40ed3dSBarry Smith PetscFunctionReturn(0); 1180fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_INFO) { 118177431f27SBarry Smith ierr = PetscViewerASCIIPrintf(viewer," block size is %D\n",bs);CHKERRQ(ierr); 11823a40ed3dSBarry Smith PetscFunctionReturn(0); 118304929863SHong Zhang } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) { 118404929863SHong Zhang PetscFunctionReturn(0); 118557b952d6SSatish Balay } 118657b952d6SSatish Balay } 118757b952d6SSatish Balay 11880f5bd95cSBarry Smith if (isdraw) { 1189b0a32e0cSBarry Smith PetscDraw draw; 119057b952d6SSatish Balay PetscTruth isnull; 1191b0a32e0cSBarry Smith ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr); 1192b0a32e0cSBarry Smith ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); if (isnull) PetscFunctionReturn(0); 119357b952d6SSatish Balay } 119457b952d6SSatish Balay 119557b952d6SSatish Balay if (size == 1) { 1196873048abSBarry Smith ierr = PetscObjectSetName((PetscObject)baij->A,mat->name);CHKERRQ(ierr); 119757b952d6SSatish Balay ierr = MatView(baij->A,viewer);CHKERRQ(ierr); 1198d64ed03dSBarry Smith } else { 119957b952d6SSatish Balay /* assemble the entire matrix onto first processor. */ 120057b952d6SSatish Balay Mat A; 120157b952d6SSatish Balay Mat_SeqBAIJ *Aloc; 1202b24ad042SBarry Smith PetscInt M = mat->M,N = mat->N,*ai,*aj,col,i,j,k,*rvals,mbs = baij->mbs; 12033eda8832SBarry Smith MatScalar *a; 120457b952d6SSatish Balay 1205f204ca49SKris Buschelman /* Here we are creating a temporary matrix, so will assume MPIBAIJ is acceptable */ 1206f204ca49SKris Buschelman /* Perhaps this should be the type of mat? */ 120757b952d6SSatish Balay if (!rank) { 1208f204ca49SKris Buschelman ierr = MatCreate(mat->comm,M,N,M,N,&A);CHKERRQ(ierr); 1209d64ed03dSBarry Smith } else { 1210f204ca49SKris Buschelman ierr = MatCreate(mat->comm,0,0,M,N,&A);CHKERRQ(ierr); 121157b952d6SSatish Balay } 1212f204ca49SKris Buschelman ierr = MatSetType(A,MATMPIBAIJ);CHKERRQ(ierr); 1213521d7252SBarry Smith ierr = MatMPIBAIJSetPreallocation(A,mat->bs,0,PETSC_NULL,0,PETSC_NULL);CHKERRQ(ierr); 121452e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,A);CHKERRQ(ierr); 121557b952d6SSatish Balay 121657b952d6SSatish Balay /* copy over the A part */ 121757b952d6SSatish Balay Aloc = (Mat_SeqBAIJ*)baij->A->data; 121857b952d6SSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 1219b24ad042SBarry Smith ierr = PetscMalloc(bs*sizeof(PetscInt),&rvals);CHKERRQ(ierr); 122057b952d6SSatish Balay 122157b952d6SSatish Balay for (i=0; i<mbs; i++) { 122257b952d6SSatish Balay rvals[0] = bs*(baij->rstart + i); 122357b952d6SSatish Balay for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; } 122457b952d6SSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 122557b952d6SSatish Balay col = (baij->cstart+aj[j])*bs; 122657b952d6SSatish Balay for (k=0; k<bs; k++) { 122793fea6afSBarry Smith ierr = MatSetValues_MPIBAIJ_MatScalar(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 1228cee3aa6bSSatish Balay col++; a += bs; 122957b952d6SSatish Balay } 123057b952d6SSatish Balay } 123157b952d6SSatish Balay } 123257b952d6SSatish Balay /* copy over the B part */ 123357b952d6SSatish Balay Aloc = (Mat_SeqBAIJ*)baij->B->data; 123457b952d6SSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 123557b952d6SSatish Balay for (i=0; i<mbs; i++) { 123657b952d6SSatish Balay rvals[0] = bs*(baij->rstart + i); 123757b952d6SSatish Balay for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; } 123857b952d6SSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 123957b952d6SSatish Balay col = baij->garray[aj[j]]*bs; 124057b952d6SSatish Balay for (k=0; k<bs; k++) { 124193fea6afSBarry Smith ierr = MatSetValues_MPIBAIJ_MatScalar(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 1242cee3aa6bSSatish Balay col++; a += bs; 124357b952d6SSatish Balay } 124457b952d6SSatish Balay } 124557b952d6SSatish Balay } 1246606d414cSSatish Balay ierr = PetscFree(rvals);CHKERRQ(ierr); 12476d4a8577SBarry Smith ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 12486d4a8577SBarry Smith ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 124955843e3eSBarry Smith /* 125055843e3eSBarry Smith Everyone has to call to draw the matrix since the graphics waits are 1251b0a32e0cSBarry Smith synchronized across all processors that share the PetscDraw object 125255843e3eSBarry Smith */ 1253b0a32e0cSBarry Smith ierr = PetscViewerGetSingleton(viewer,&sviewer);CHKERRQ(ierr); 1254f14a1c24SBarry Smith if (!rank) { 1255e36acaf3SBarry Smith ierr = PetscObjectSetName((PetscObject)((Mat_MPIBAIJ*)(A->data))->A,mat->name);CHKERRQ(ierr); 12566831982aSBarry Smith ierr = MatView(((Mat_MPIBAIJ*)(A->data))->A,sviewer);CHKERRQ(ierr); 125757b952d6SSatish Balay } 1258b0a32e0cSBarry Smith ierr = PetscViewerRestoreSingleton(viewer,&sviewer);CHKERRQ(ierr); 125957b952d6SSatish Balay ierr = MatDestroy(A);CHKERRQ(ierr); 126057b952d6SSatish Balay } 12613a40ed3dSBarry Smith PetscFunctionReturn(0); 126257b952d6SSatish Balay } 126357b952d6SSatish Balay 12644a2ae208SSatish Balay #undef __FUNCT__ 12654a2ae208SSatish Balay #define __FUNCT__ "MatView_MPIBAIJ" 1266dfbe8321SBarry Smith PetscErrorCode MatView_MPIBAIJ(Mat mat,PetscViewer viewer) 126757b952d6SSatish Balay { 1268dfbe8321SBarry Smith PetscErrorCode ierr; 126932077d6dSBarry Smith PetscTruth iascii,isdraw,issocket,isbinary; 127057b952d6SSatish Balay 1271d64ed03dSBarry Smith PetscFunctionBegin; 127232077d6dSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&iascii);CHKERRQ(ierr); 1273fb9695e5SSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr); 1274b0a32e0cSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_SOCKET,&issocket);CHKERRQ(ierr); 1275fb9695e5SSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_BINARY,&isbinary);CHKERRQ(ierr); 127632077d6dSBarry Smith if (iascii || isdraw || issocket || isbinary) { 12777b2a1423SBarry Smith ierr = MatView_MPIBAIJ_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr); 12785cd90555SBarry Smith } else { 127979a5c55eSBarry Smith SETERRQ1(PETSC_ERR_SUP,"Viewer type %s not supported by MPIBAIJ matrices",((PetscObject)viewer)->type_name); 128057b952d6SSatish Balay } 12813a40ed3dSBarry Smith PetscFunctionReturn(0); 128257b952d6SSatish Balay } 128357b952d6SSatish Balay 12844a2ae208SSatish Balay #undef __FUNCT__ 12854a2ae208SSatish Balay #define __FUNCT__ "MatDestroy_MPIBAIJ" 1286dfbe8321SBarry Smith PetscErrorCode MatDestroy_MPIBAIJ(Mat mat) 128779bdfe76SSatish Balay { 128879bdfe76SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 1289dfbe8321SBarry Smith PetscErrorCode ierr; 129079bdfe76SSatish Balay 1291d64ed03dSBarry Smith PetscFunctionBegin; 1292aa482453SBarry Smith #if defined(PETSC_USE_LOG) 129377431f27SBarry Smith PetscLogObjectState((PetscObject)mat,"Rows=%D,Cols=%D",mat->M,mat->N); 129479bdfe76SSatish Balay #endif 12958798bf22SSatish Balay ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr); 12968798bf22SSatish Balay ierr = MatStashDestroy_Private(&mat->bstash);CHKERRQ(ierr); 1297606d414cSSatish Balay ierr = PetscFree(baij->rowners);CHKERRQ(ierr); 129879bdfe76SSatish Balay ierr = MatDestroy(baij->A);CHKERRQ(ierr); 129979bdfe76SSatish Balay ierr = MatDestroy(baij->B);CHKERRQ(ierr); 1300aa482453SBarry Smith #if defined (PETSC_USE_CTABLE) 13010f5bd95cSBarry Smith if (baij->colmap) {ierr = PetscTableDelete(baij->colmap);CHKERRQ(ierr);} 130248e59246SSatish Balay #else 1303606d414cSSatish Balay if (baij->colmap) {ierr = PetscFree(baij->colmap);CHKERRQ(ierr);} 130448e59246SSatish Balay #endif 1305606d414cSSatish Balay if (baij->garray) {ierr = PetscFree(baij->garray);CHKERRQ(ierr);} 1306606d414cSSatish Balay if (baij->lvec) {ierr = VecDestroy(baij->lvec);CHKERRQ(ierr);} 1307606d414cSSatish Balay if (baij->Mvctx) {ierr = VecScatterDestroy(baij->Mvctx);CHKERRQ(ierr);} 1308606d414cSSatish Balay if (baij->rowvalues) {ierr = PetscFree(baij->rowvalues);CHKERRQ(ierr);} 1309606d414cSSatish Balay if (baij->barray) {ierr = PetscFree(baij->barray);CHKERRQ(ierr);} 1310606d414cSSatish Balay if (baij->hd) {ierr = PetscFree(baij->hd);CHKERRQ(ierr);} 13116fa18ffdSBarry Smith #if defined(PETSC_USE_MAT_SINGLE) 13126fa18ffdSBarry Smith if (baij->setvaluescopy) {ierr = PetscFree(baij->setvaluescopy);CHKERRQ(ierr);} 13136fa18ffdSBarry Smith #endif 1314606d414cSSatish Balay ierr = PetscFree(baij);CHKERRQ(ierr); 1315901853e0SKris Buschelman 1316901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatStoreValues_C","",PETSC_NULL);CHKERRQ(ierr); 1317901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatRetrieveValues_C","",PETSC_NULL);CHKERRQ(ierr); 1318901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatGetDiagonalBlock_C","",PETSC_NULL);CHKERRQ(ierr); 1319901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPIBAIJSetPreallocation_C","",PETSC_NULL);CHKERRQ(ierr); 1320aac34f13SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPIBAIJSetPreallocationCSR_C","",PETSC_NULL);CHKERRQ(ierr); 1321901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDiagonalScaleLocal_C","",PETSC_NULL);CHKERRQ(ierr); 1322901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatSetHashTableFactor_C","",PETSC_NULL);CHKERRQ(ierr); 13233a40ed3dSBarry Smith PetscFunctionReturn(0); 132479bdfe76SSatish Balay } 132579bdfe76SSatish Balay 13264a2ae208SSatish Balay #undef __FUNCT__ 13274a2ae208SSatish Balay #define __FUNCT__ "MatMult_MPIBAIJ" 1328dfbe8321SBarry Smith PetscErrorCode MatMult_MPIBAIJ(Mat A,Vec xx,Vec yy) 1329cee3aa6bSSatish Balay { 1330cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1331dfbe8321SBarry Smith PetscErrorCode ierr; 1332b24ad042SBarry Smith PetscInt nt; 1333cee3aa6bSSatish Balay 1334d64ed03dSBarry Smith PetscFunctionBegin; 1335e1311b90SBarry Smith ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr); 1336273d9f13SBarry Smith if (nt != A->n) { 133729bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx"); 133847b4a8eaSLois Curfman McInnes } 1339e1311b90SBarry Smith ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr); 1340273d9f13SBarry Smith if (nt != A->m) { 134129bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible parition of A and yy"); 134247b4a8eaSLois Curfman McInnes } 134343a90d84SBarry Smith ierr = VecScatterBegin(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr); 1344f830108cSBarry Smith ierr = (*a->A->ops->mult)(a->A,xx,yy);CHKERRQ(ierr); 134543a90d84SBarry Smith ierr = VecScatterEnd(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr); 1346f830108cSBarry Smith ierr = (*a->B->ops->multadd)(a->B,a->lvec,yy,yy);CHKERRQ(ierr); 134743a90d84SBarry Smith ierr = VecScatterPostRecvs(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr); 13483a40ed3dSBarry Smith PetscFunctionReturn(0); 1349cee3aa6bSSatish Balay } 1350cee3aa6bSSatish Balay 13514a2ae208SSatish Balay #undef __FUNCT__ 13524a2ae208SSatish Balay #define __FUNCT__ "MatMultAdd_MPIBAIJ" 1353dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPIBAIJ(Mat A,Vec xx,Vec yy,Vec zz) 1354cee3aa6bSSatish Balay { 1355cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1356dfbe8321SBarry Smith PetscErrorCode ierr; 1357d64ed03dSBarry Smith 1358d64ed03dSBarry Smith PetscFunctionBegin; 135943a90d84SBarry Smith ierr = VecScatterBegin(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr); 1360f830108cSBarry Smith ierr = (*a->A->ops->multadd)(a->A,xx,yy,zz);CHKERRQ(ierr); 136143a90d84SBarry Smith ierr = VecScatterEnd(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr); 1362f830108cSBarry Smith ierr = (*a->B->ops->multadd)(a->B,a->lvec,zz,zz);CHKERRQ(ierr); 13633a40ed3dSBarry Smith PetscFunctionReturn(0); 1364cee3aa6bSSatish Balay } 1365cee3aa6bSSatish Balay 13664a2ae208SSatish Balay #undef __FUNCT__ 13674a2ae208SSatish Balay #define __FUNCT__ "MatMultTranspose_MPIBAIJ" 1368dfbe8321SBarry Smith PetscErrorCode MatMultTranspose_MPIBAIJ(Mat A,Vec xx,Vec yy) 1369cee3aa6bSSatish Balay { 1370cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1371dfbe8321SBarry Smith PetscErrorCode ierr; 1372a5ff213dSBarry Smith PetscTruth merged; 1373cee3aa6bSSatish Balay 1374d64ed03dSBarry Smith PetscFunctionBegin; 1375a5ff213dSBarry Smith ierr = VecScatterGetMerged(a->Mvctx,&merged);CHKERRQ(ierr); 1376cee3aa6bSSatish Balay /* do nondiagonal part */ 13777c922b88SBarry Smith ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr); 1378a5ff213dSBarry Smith if (!merged) { 1379cee3aa6bSSatish Balay /* send it on its way */ 1380537820f0SBarry Smith ierr = VecScatterBegin(a->lvec,yy,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr); 1381cee3aa6bSSatish Balay /* do local part */ 13827c922b88SBarry Smith ierr = (*a->A->ops->multtranspose)(a->A,xx,yy);CHKERRQ(ierr); 1383cee3aa6bSSatish Balay /* receive remote parts: note this assumes the values are not actually */ 1384a5ff213dSBarry Smith /* inserted in yy until the next line */ 1385639f9d9dSBarry Smith ierr = VecScatterEnd(a->lvec,yy,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr); 1386a5ff213dSBarry Smith } else { 1387a5ff213dSBarry Smith /* do local part */ 1388a5ff213dSBarry Smith ierr = (*a->A->ops->multtranspose)(a->A,xx,yy);CHKERRQ(ierr); 1389a5ff213dSBarry Smith /* send it on its way */ 1390a5ff213dSBarry Smith ierr = VecScatterBegin(a->lvec,yy,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr); 1391a5ff213dSBarry Smith /* values actually were received in the Begin() but we need to call this nop */ 1392a5ff213dSBarry Smith ierr = VecScatterEnd(a->lvec,yy,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr); 1393a5ff213dSBarry Smith } 13943a40ed3dSBarry Smith PetscFunctionReturn(0); 1395cee3aa6bSSatish Balay } 1396cee3aa6bSSatish Balay 13974a2ae208SSatish Balay #undef __FUNCT__ 13984a2ae208SSatish Balay #define __FUNCT__ "MatMultTransposeAdd_MPIBAIJ" 1399dfbe8321SBarry Smith PetscErrorCode MatMultTransposeAdd_MPIBAIJ(Mat A,Vec xx,Vec yy,Vec zz) 1400cee3aa6bSSatish Balay { 1401cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1402dfbe8321SBarry Smith PetscErrorCode ierr; 1403cee3aa6bSSatish Balay 1404d64ed03dSBarry Smith PetscFunctionBegin; 1405cee3aa6bSSatish Balay /* do nondiagonal part */ 14067c922b88SBarry Smith ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr); 1407cee3aa6bSSatish Balay /* send it on its way */ 1408537820f0SBarry Smith ierr = VecScatterBegin(a->lvec,zz,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr); 1409cee3aa6bSSatish Balay /* do local part */ 14107c922b88SBarry Smith ierr = (*a->A->ops->multtransposeadd)(a->A,xx,yy,zz);CHKERRQ(ierr); 1411cee3aa6bSSatish Balay /* receive remote parts: note this assumes the values are not actually */ 1412cee3aa6bSSatish Balay /* inserted in yy until the next line, which is true for my implementation*/ 1413cee3aa6bSSatish Balay /* but is not perhaps always true. */ 1414537820f0SBarry Smith ierr = VecScatterEnd(a->lvec,zz,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr); 14153a40ed3dSBarry Smith PetscFunctionReturn(0); 1416cee3aa6bSSatish Balay } 1417cee3aa6bSSatish Balay 1418cee3aa6bSSatish Balay /* 1419cee3aa6bSSatish Balay This only works correctly for square matrices where the subblock A->A is the 1420cee3aa6bSSatish Balay diagonal block 1421cee3aa6bSSatish Balay */ 14224a2ae208SSatish Balay #undef __FUNCT__ 14234a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonal_MPIBAIJ" 1424dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_MPIBAIJ(Mat A,Vec v) 1425cee3aa6bSSatish Balay { 1426cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1427dfbe8321SBarry Smith PetscErrorCode ierr; 1428d64ed03dSBarry Smith 1429d64ed03dSBarry Smith PetscFunctionBegin; 1430273d9f13SBarry Smith if (A->M != A->N) SETERRQ(PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block"); 14313a40ed3dSBarry Smith ierr = MatGetDiagonal(a->A,v);CHKERRQ(ierr); 14323a40ed3dSBarry Smith PetscFunctionReturn(0); 1433cee3aa6bSSatish Balay } 1434cee3aa6bSSatish Balay 14354a2ae208SSatish Balay #undef __FUNCT__ 14364a2ae208SSatish Balay #define __FUNCT__ "MatScale_MPIBAIJ" 1437dfbe8321SBarry Smith PetscErrorCode MatScale_MPIBAIJ(const PetscScalar *aa,Mat A) 1438cee3aa6bSSatish Balay { 1439cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1440dfbe8321SBarry Smith PetscErrorCode ierr; 1441d64ed03dSBarry Smith 1442d64ed03dSBarry Smith PetscFunctionBegin; 1443cee3aa6bSSatish Balay ierr = MatScale(aa,a->A);CHKERRQ(ierr); 1444cee3aa6bSSatish Balay ierr = MatScale(aa,a->B);CHKERRQ(ierr); 14453a40ed3dSBarry Smith PetscFunctionReturn(0); 1446cee3aa6bSSatish Balay } 1447026e39d0SSatish Balay 14484a2ae208SSatish Balay #undef __FUNCT__ 14494a2ae208SSatish Balay #define __FUNCT__ "MatGetRow_MPIBAIJ" 1450b24ad042SBarry Smith PetscErrorCode MatGetRow_MPIBAIJ(Mat matin,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 1451acdf5bf4SSatish Balay { 1452acdf5bf4SSatish Balay Mat_MPIBAIJ *mat = (Mat_MPIBAIJ*)matin->data; 145387828ca2SBarry Smith PetscScalar *vworkA,*vworkB,**pvA,**pvB,*v_p; 14546849ba73SBarry Smith PetscErrorCode ierr; 1455521d7252SBarry Smith PetscInt bs = matin->bs,bs2 = mat->bs2,i,*cworkA,*cworkB,**pcA,**pcB; 1456b24ad042SBarry Smith PetscInt nztot,nzA,nzB,lrow,brstart = mat->rstart*bs,brend = mat->rend*bs; 1457b24ad042SBarry Smith PetscInt *cmap,*idx_p,cstart = mat->cstart; 1458acdf5bf4SSatish Balay 1459d64ed03dSBarry Smith PetscFunctionBegin; 1460abc0a331SBarry Smith if (mat->getrowactive) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Already active"); 1461acdf5bf4SSatish Balay mat->getrowactive = PETSC_TRUE; 1462acdf5bf4SSatish Balay 1463acdf5bf4SSatish Balay if (!mat->rowvalues && (idx || v)) { 1464acdf5bf4SSatish Balay /* 1465acdf5bf4SSatish Balay allocate enough space to hold information from the longest row. 1466acdf5bf4SSatish Balay */ 1467acdf5bf4SSatish Balay Mat_SeqBAIJ *Aa = (Mat_SeqBAIJ*)mat->A->data,*Ba = (Mat_SeqBAIJ*)mat->B->data; 1468b24ad042SBarry Smith PetscInt max = 1,mbs = mat->mbs,tmp; 1469bd16c2feSSatish Balay for (i=0; i<mbs; i++) { 1470acdf5bf4SSatish Balay tmp = Aa->i[i+1] - Aa->i[i] + Ba->i[i+1] - Ba->i[i]; 1471acdf5bf4SSatish Balay if (max < tmp) { max = tmp; } 1472acdf5bf4SSatish Balay } 1473b24ad042SBarry Smith ierr = PetscMalloc(max*bs2*(sizeof(PetscInt)+sizeof(PetscScalar)),&mat->rowvalues);CHKERRQ(ierr); 1474b24ad042SBarry Smith mat->rowindices = (PetscInt*)(mat->rowvalues + max*bs2); 1475acdf5bf4SSatish Balay } 1476acdf5bf4SSatish Balay 147729bbc08cSBarry Smith if (row < brstart || row >= brend) SETERRQ(PETSC_ERR_SUP,"Only local rows") 1478d9d09a02SSatish Balay lrow = row - brstart; 1479acdf5bf4SSatish Balay 1480acdf5bf4SSatish Balay pvA = &vworkA; pcA = &cworkA; pvB = &vworkB; pcB = &cworkB; 1481acdf5bf4SSatish Balay if (!v) {pvA = 0; pvB = 0;} 1482acdf5bf4SSatish Balay if (!idx) {pcA = 0; if (!v) pcB = 0;} 1483f830108cSBarry Smith ierr = (*mat->A->ops->getrow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr); 1484f830108cSBarry Smith ierr = (*mat->B->ops->getrow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr); 1485acdf5bf4SSatish Balay nztot = nzA + nzB; 1486acdf5bf4SSatish Balay 1487acdf5bf4SSatish Balay cmap = mat->garray; 1488acdf5bf4SSatish Balay if (v || idx) { 1489acdf5bf4SSatish Balay if (nztot) { 1490acdf5bf4SSatish Balay /* Sort by increasing column numbers, assuming A and B already sorted */ 1491b24ad042SBarry Smith PetscInt imark = -1; 1492acdf5bf4SSatish Balay if (v) { 1493acdf5bf4SSatish Balay *v = v_p = mat->rowvalues; 1494acdf5bf4SSatish Balay for (i=0; i<nzB; i++) { 1495d9d09a02SSatish Balay if (cmap[cworkB[i]/bs] < cstart) v_p[i] = vworkB[i]; 1496acdf5bf4SSatish Balay else break; 1497acdf5bf4SSatish Balay } 1498acdf5bf4SSatish Balay imark = i; 1499acdf5bf4SSatish Balay for (i=0; i<nzA; i++) v_p[imark+i] = vworkA[i]; 1500acdf5bf4SSatish Balay for (i=imark; i<nzB; i++) v_p[nzA+i] = vworkB[i]; 1501acdf5bf4SSatish Balay } 1502acdf5bf4SSatish Balay if (idx) { 1503acdf5bf4SSatish Balay *idx = idx_p = mat->rowindices; 1504acdf5bf4SSatish Balay if (imark > -1) { 1505acdf5bf4SSatish Balay for (i=0; i<imark; i++) { 1506bd16c2feSSatish Balay idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs; 1507acdf5bf4SSatish Balay } 1508acdf5bf4SSatish Balay } else { 1509acdf5bf4SSatish Balay for (i=0; i<nzB; i++) { 1510d9d09a02SSatish Balay if (cmap[cworkB[i]/bs] < cstart) 1511d9d09a02SSatish Balay idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ; 1512acdf5bf4SSatish Balay else break; 1513acdf5bf4SSatish Balay } 1514acdf5bf4SSatish Balay imark = i; 1515acdf5bf4SSatish Balay } 1516d9d09a02SSatish Balay for (i=0; i<nzA; i++) idx_p[imark+i] = cstart*bs + cworkA[i]; 1517d9d09a02SSatish Balay for (i=imark; i<nzB; i++) idx_p[nzA+i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ; 1518acdf5bf4SSatish Balay } 1519d64ed03dSBarry Smith } else { 1520d212a18eSSatish Balay if (idx) *idx = 0; 1521d212a18eSSatish Balay if (v) *v = 0; 1522d212a18eSSatish Balay } 1523acdf5bf4SSatish Balay } 1524acdf5bf4SSatish Balay *nz = nztot; 1525f830108cSBarry Smith ierr = (*mat->A->ops->restorerow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr); 1526f830108cSBarry Smith ierr = (*mat->B->ops->restorerow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr); 15273a40ed3dSBarry Smith PetscFunctionReturn(0); 1528acdf5bf4SSatish Balay } 1529acdf5bf4SSatish Balay 15304a2ae208SSatish Balay #undef __FUNCT__ 15314a2ae208SSatish Balay #define __FUNCT__ "MatRestoreRow_MPIBAIJ" 1532b24ad042SBarry Smith PetscErrorCode MatRestoreRow_MPIBAIJ(Mat mat,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 1533acdf5bf4SSatish Balay { 1534acdf5bf4SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 1535d64ed03dSBarry Smith 1536d64ed03dSBarry Smith PetscFunctionBegin; 1537abc0a331SBarry Smith if (!baij->getrowactive) { 153829bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"MatGetRow not called"); 1539acdf5bf4SSatish Balay } 1540acdf5bf4SSatish Balay baij->getrowactive = PETSC_FALSE; 15413a40ed3dSBarry Smith PetscFunctionReturn(0); 1542acdf5bf4SSatish Balay } 1543acdf5bf4SSatish Balay 15444a2ae208SSatish Balay #undef __FUNCT__ 15454a2ae208SSatish Balay #define __FUNCT__ "MatZeroEntries_MPIBAIJ" 1546dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_MPIBAIJ(Mat A) 154758667388SSatish Balay { 154858667388SSatish Balay Mat_MPIBAIJ *l = (Mat_MPIBAIJ*)A->data; 1549dfbe8321SBarry Smith PetscErrorCode ierr; 1550d64ed03dSBarry Smith 1551d64ed03dSBarry Smith PetscFunctionBegin; 155258667388SSatish Balay ierr = MatZeroEntries(l->A);CHKERRQ(ierr); 155358667388SSatish Balay ierr = MatZeroEntries(l->B);CHKERRQ(ierr); 15543a40ed3dSBarry Smith PetscFunctionReturn(0); 155558667388SSatish Balay } 15560ac07820SSatish Balay 15574a2ae208SSatish Balay #undef __FUNCT__ 15584a2ae208SSatish Balay #define __FUNCT__ "MatGetInfo_MPIBAIJ" 1559dfbe8321SBarry Smith PetscErrorCode MatGetInfo_MPIBAIJ(Mat matin,MatInfoType flag,MatInfo *info) 15600ac07820SSatish Balay { 15614e220ebcSLois Curfman McInnes Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)matin->data; 15624e220ebcSLois Curfman McInnes Mat A = a->A,B = a->B; 1563dfbe8321SBarry Smith PetscErrorCode ierr; 1564329f5518SBarry Smith PetscReal isend[5],irecv[5]; 15650ac07820SSatish Balay 1566d64ed03dSBarry Smith PetscFunctionBegin; 1567521d7252SBarry Smith info->block_size = (PetscReal)matin->bs; 15684e220ebcSLois Curfman McInnes ierr = MatGetInfo(A,MAT_LOCAL,info);CHKERRQ(ierr); 15690e4b21beSBarry Smith isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded; 1570de87f314SBarry Smith isend[3] = info->memory; isend[4] = info->mallocs; 15714e220ebcSLois Curfman McInnes ierr = MatGetInfo(B,MAT_LOCAL,info);CHKERRQ(ierr); 15720e4b21beSBarry Smith isend[0] += info->nz_used; isend[1] += info->nz_allocated; isend[2] += info->nz_unneeded; 1573de87f314SBarry Smith isend[3] += info->memory; isend[4] += info->mallocs; 15740ac07820SSatish Balay if (flag == MAT_LOCAL) { 15754e220ebcSLois Curfman McInnes info->nz_used = isend[0]; 15764e220ebcSLois Curfman McInnes info->nz_allocated = isend[1]; 15774e220ebcSLois Curfman McInnes info->nz_unneeded = isend[2]; 15784e220ebcSLois Curfman McInnes info->memory = isend[3]; 15794e220ebcSLois Curfman McInnes info->mallocs = isend[4]; 15800ac07820SSatish Balay } else if (flag == MAT_GLOBAL_MAX) { 1581d7d1e502SBarry Smith ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_MAX,matin->comm);CHKERRQ(ierr); 15824e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 15834e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 15844e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 15854e220ebcSLois Curfman McInnes info->memory = irecv[3]; 15864e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 15870ac07820SSatish Balay } else if (flag == MAT_GLOBAL_SUM) { 1588d7d1e502SBarry Smith ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_SUM,matin->comm);CHKERRQ(ierr); 15894e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 15904e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 15914e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 15924e220ebcSLois Curfman McInnes info->memory = irecv[3]; 15934e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 1594d41123aaSBarry Smith } else { 159577431f27SBarry Smith SETERRQ1(PETSC_ERR_ARG_WRONG,"Unknown MatInfoType argument %d",(int)flag); 15960ac07820SSatish Balay } 1597f6275e2eSBarry Smith info->rows_global = (PetscReal)A->M; 1598f6275e2eSBarry Smith info->columns_global = (PetscReal)A->N; 1599f6275e2eSBarry Smith info->rows_local = (PetscReal)A->m; 1600f6275e2eSBarry Smith info->columns_local = (PetscReal)A->N; 16014e220ebcSLois Curfman McInnes info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */ 16024e220ebcSLois Curfman McInnes info->fill_ratio_needed = 0; 16034e220ebcSLois Curfman McInnes info->factor_mallocs = 0; 16043a40ed3dSBarry Smith PetscFunctionReturn(0); 16050ac07820SSatish Balay } 16060ac07820SSatish Balay 16074a2ae208SSatish Balay #undef __FUNCT__ 16084a2ae208SSatish Balay #define __FUNCT__ "MatSetOption_MPIBAIJ" 1609dfbe8321SBarry Smith PetscErrorCode MatSetOption_MPIBAIJ(Mat A,MatOption op) 161058667388SSatish Balay { 161158667388SSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1612dfbe8321SBarry Smith PetscErrorCode ierr; 161358667388SSatish Balay 1614d64ed03dSBarry Smith PetscFunctionBegin; 161512c028f9SKris Buschelman switch (op) { 161612c028f9SKris Buschelman case MAT_NO_NEW_NONZERO_LOCATIONS: 161712c028f9SKris Buschelman case MAT_YES_NEW_NONZERO_LOCATIONS: 161812c028f9SKris Buschelman case MAT_COLUMNS_UNSORTED: 161912c028f9SKris Buschelman case MAT_COLUMNS_SORTED: 162012c028f9SKris Buschelman case MAT_NEW_NONZERO_ALLOCATION_ERR: 162112c028f9SKris Buschelman case MAT_KEEP_ZEROED_ROWS: 162212c028f9SKris Buschelman case MAT_NEW_NONZERO_LOCATION_ERR: 162398305bb5SBarry Smith ierr = MatSetOption(a->A,op);CHKERRQ(ierr); 162498305bb5SBarry Smith ierr = MatSetOption(a->B,op);CHKERRQ(ierr); 162512c028f9SKris Buschelman break; 162612c028f9SKris Buschelman case MAT_ROW_ORIENTED: 16277c922b88SBarry Smith a->roworiented = PETSC_TRUE; 162898305bb5SBarry Smith ierr = MatSetOption(a->A,op);CHKERRQ(ierr); 162998305bb5SBarry Smith ierr = MatSetOption(a->B,op);CHKERRQ(ierr); 163012c028f9SKris Buschelman break; 163112c028f9SKris Buschelman case MAT_ROWS_SORTED: 163212c028f9SKris Buschelman case MAT_ROWS_UNSORTED: 163312c028f9SKris Buschelman case MAT_YES_NEW_DIAGONALS: 163463ba0a88SBarry Smith ierr = PetscLogInfo((A,"Info:MatSetOption_MPIBAIJ:Option ignored\n"));CHKERRQ(ierr); 163512c028f9SKris Buschelman break; 163612c028f9SKris Buschelman case MAT_COLUMN_ORIENTED: 16377c922b88SBarry Smith a->roworiented = PETSC_FALSE; 163898305bb5SBarry Smith ierr = MatSetOption(a->A,op);CHKERRQ(ierr); 163998305bb5SBarry Smith ierr = MatSetOption(a->B,op);CHKERRQ(ierr); 164012c028f9SKris Buschelman break; 164112c028f9SKris Buschelman case MAT_IGNORE_OFF_PROC_ENTRIES: 16427c922b88SBarry Smith a->donotstash = PETSC_TRUE; 164312c028f9SKris Buschelman break; 164412c028f9SKris Buschelman case MAT_NO_NEW_DIAGONALS: 164529bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"MAT_NO_NEW_DIAGONALS"); 164612c028f9SKris Buschelman case MAT_USE_HASH_TABLE: 16477c922b88SBarry Smith a->ht_flag = PETSC_TRUE; 164812c028f9SKris Buschelman break; 164977e54ba9SKris Buschelman case MAT_SYMMETRIC: 165077e54ba9SKris Buschelman case MAT_STRUCTURALLY_SYMMETRIC: 16512188ac68SBarry Smith case MAT_HERMITIAN: 16522188ac68SBarry Smith case MAT_SYMMETRY_ETERNAL: 16532188ac68SBarry Smith ierr = MatSetOption(a->A,op);CHKERRQ(ierr); 16542188ac68SBarry Smith break; 16559a4540c5SBarry Smith case MAT_NOT_SYMMETRIC: 16569a4540c5SBarry Smith case MAT_NOT_STRUCTURALLY_SYMMETRIC: 16579a4540c5SBarry Smith case MAT_NOT_HERMITIAN: 16589a4540c5SBarry Smith case MAT_NOT_SYMMETRY_ETERNAL: 165977e54ba9SKris Buschelman break; 166012c028f9SKris Buschelman default: 166129bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"unknown option"); 1662d64ed03dSBarry Smith } 16633a40ed3dSBarry Smith PetscFunctionReturn(0); 166458667388SSatish Balay } 166558667388SSatish Balay 16664a2ae208SSatish Balay #undef __FUNCT__ 16674a2ae208SSatish Balay #define __FUNCT__ "MatTranspose_MPIBAIJ(" 1668dfbe8321SBarry Smith PetscErrorCode MatTranspose_MPIBAIJ(Mat A,Mat *matout) 16690ac07820SSatish Balay { 16700ac07820SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)A->data; 16710ac07820SSatish Balay Mat_SeqBAIJ *Aloc; 16720ac07820SSatish Balay Mat B; 1673dfbe8321SBarry Smith PetscErrorCode ierr; 1674b24ad042SBarry Smith PetscInt M=A->M,N=A->N,*ai,*aj,i,*rvals,j,k,col; 1675521d7252SBarry Smith PetscInt bs=A->bs,mbs=baij->mbs; 16763eda8832SBarry Smith MatScalar *a; 16770ac07820SSatish Balay 1678d64ed03dSBarry Smith PetscFunctionBegin; 167929bbc08cSBarry Smith if (!matout && M != N) SETERRQ(PETSC_ERR_ARG_SIZ,"Square matrix only for in-place"); 1680f204ca49SKris Buschelman ierr = MatCreate(A->comm,A->n,A->m,N,M,&B);CHKERRQ(ierr); 1681f204ca49SKris Buschelman ierr = MatSetType(B,A->type_name);CHKERRQ(ierr); 1682521d7252SBarry Smith ierr = MatMPIBAIJSetPreallocation(B,A->bs,0,PETSC_NULL,0,PETSC_NULL);CHKERRQ(ierr); 16830ac07820SSatish Balay 16840ac07820SSatish Balay /* copy over the A part */ 16850ac07820SSatish Balay Aloc = (Mat_SeqBAIJ*)baij->A->data; 16860ac07820SSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 1687b24ad042SBarry Smith ierr = PetscMalloc(bs*sizeof(PetscInt),&rvals);CHKERRQ(ierr); 16880ac07820SSatish Balay 16890ac07820SSatish Balay for (i=0; i<mbs; i++) { 16900ac07820SSatish Balay rvals[0] = bs*(baij->rstart + i); 16910ac07820SSatish Balay for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; } 16920ac07820SSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 16930ac07820SSatish Balay col = (baij->cstart+aj[j])*bs; 16940ac07820SSatish Balay for (k=0; k<bs; k++) { 169593fea6afSBarry Smith ierr = MatSetValues_MPIBAIJ_MatScalar(B,1,&col,bs,rvals,a,INSERT_VALUES);CHKERRQ(ierr); 16960ac07820SSatish Balay col++; a += bs; 16970ac07820SSatish Balay } 16980ac07820SSatish Balay } 16990ac07820SSatish Balay } 17000ac07820SSatish Balay /* copy over the B part */ 17010ac07820SSatish Balay Aloc = (Mat_SeqBAIJ*)baij->B->data; 17020ac07820SSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 17030ac07820SSatish Balay for (i=0; i<mbs; i++) { 17040ac07820SSatish Balay rvals[0] = bs*(baij->rstart + i); 17050ac07820SSatish Balay for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; } 17060ac07820SSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 17070ac07820SSatish Balay col = baij->garray[aj[j]]*bs; 17080ac07820SSatish Balay for (k=0; k<bs; k++) { 170993fea6afSBarry Smith ierr = MatSetValues_MPIBAIJ_MatScalar(B,1,&col,bs,rvals,a,INSERT_VALUES);CHKERRQ(ierr); 17100ac07820SSatish Balay col++; a += bs; 17110ac07820SSatish Balay } 17120ac07820SSatish Balay } 17130ac07820SSatish Balay } 1714606d414cSSatish Balay ierr = PetscFree(rvals);CHKERRQ(ierr); 17150ac07820SSatish Balay ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 17160ac07820SSatish Balay ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 17170ac07820SSatish Balay 17187c922b88SBarry Smith if (matout) { 17190ac07820SSatish Balay *matout = B; 17200ac07820SSatish Balay } else { 1721273d9f13SBarry Smith ierr = MatHeaderCopy(A,B);CHKERRQ(ierr); 17220ac07820SSatish Balay } 17233a40ed3dSBarry Smith PetscFunctionReturn(0); 17240ac07820SSatish Balay } 17250e95ebc0SSatish Balay 17264a2ae208SSatish Balay #undef __FUNCT__ 17274a2ae208SSatish Balay #define __FUNCT__ "MatDiagonalScale_MPIBAIJ" 1728dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_MPIBAIJ(Mat mat,Vec ll,Vec rr) 17290e95ebc0SSatish Balay { 173036c4a09eSSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 173136c4a09eSSatish Balay Mat a = baij->A,b = baij->B; 1732dfbe8321SBarry Smith PetscErrorCode ierr; 1733b24ad042SBarry Smith PetscInt s1,s2,s3; 17340e95ebc0SSatish Balay 1735d64ed03dSBarry Smith PetscFunctionBegin; 173636c4a09eSSatish Balay ierr = MatGetLocalSize(mat,&s2,&s3);CHKERRQ(ierr); 173736c4a09eSSatish Balay if (rr) { 173836c4a09eSSatish Balay ierr = VecGetLocalSize(rr,&s1);CHKERRQ(ierr); 173929bbc08cSBarry Smith if (s1!=s3) SETERRQ(PETSC_ERR_ARG_SIZ,"right vector non-conforming local size"); 174036c4a09eSSatish Balay /* Overlap communication with computation. */ 174136c4a09eSSatish Balay ierr = VecScatterBegin(rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD,baij->Mvctx);CHKERRQ(ierr); 174236c4a09eSSatish Balay } 17430e95ebc0SSatish Balay if (ll) { 17440e95ebc0SSatish Balay ierr = VecGetLocalSize(ll,&s1);CHKERRQ(ierr); 174529bbc08cSBarry Smith if (s1!=s2) SETERRQ(PETSC_ERR_ARG_SIZ,"left vector non-conforming local size"); 1746a21fb8cbSBarry Smith ierr = (*b->ops->diagonalscale)(b,ll,PETSC_NULL);CHKERRQ(ierr); 17470e95ebc0SSatish Balay } 174836c4a09eSSatish Balay /* scale the diagonal block */ 174936c4a09eSSatish Balay ierr = (*a->ops->diagonalscale)(a,ll,rr);CHKERRQ(ierr); 175036c4a09eSSatish Balay 175136c4a09eSSatish Balay if (rr) { 175236c4a09eSSatish Balay /* Do a scatter end and then right scale the off-diagonal block */ 175336c4a09eSSatish Balay ierr = VecScatterEnd(rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD,baij->Mvctx);CHKERRQ(ierr); 1754a21fb8cbSBarry Smith ierr = (*b->ops->diagonalscale)(b,PETSC_NULL,baij->lvec);CHKERRQ(ierr); 175536c4a09eSSatish Balay } 175636c4a09eSSatish Balay 17573a40ed3dSBarry Smith PetscFunctionReturn(0); 17580e95ebc0SSatish Balay } 17590e95ebc0SSatish Balay 17604a2ae208SSatish Balay #undef __FUNCT__ 17614a2ae208SSatish Balay #define __FUNCT__ "MatZeroRows_MPIBAIJ" 1762dfbe8321SBarry Smith PetscErrorCode MatZeroRows_MPIBAIJ(Mat A,IS is,const PetscScalar *diag) 17630ac07820SSatish Balay { 17640ac07820SSatish Balay Mat_MPIBAIJ *l = (Mat_MPIBAIJ*)A->data; 17656849ba73SBarry Smith PetscErrorCode ierr; 1766b24ad042SBarry Smith PetscMPIInt imdex,size = l->size,n,rank = l->rank; 1767b24ad042SBarry Smith PetscInt i,N,*rows,*owners = l->rowners; 1768b24ad042SBarry Smith PetscInt *nprocs,j,idx,nsends,row; 1769b24ad042SBarry Smith PetscInt nmax,*svalues,*starts,*owner,nrecvs; 17706543fbbaSBarry Smith PetscInt *rvalues,tag = A->tag,count,base,slen,*source,lastidx = -1; 1771521d7252SBarry Smith PetscInt *lens,*lrows,*values,bs=A->bs,rstart_bs=l->rstart_bs; 17720ac07820SSatish Balay MPI_Comm comm = A->comm; 17730ac07820SSatish Balay MPI_Request *send_waits,*recv_waits; 17740ac07820SSatish Balay MPI_Status recv_status,*send_status; 17750ac07820SSatish Balay IS istmp; 17766543fbbaSBarry Smith #if defined(PETSC_DEBUG) 17776543fbbaSBarry Smith PetscTruth found = PETSC_FALSE; 17786543fbbaSBarry Smith #endif 17790ac07820SSatish Balay 1780d64ed03dSBarry Smith PetscFunctionBegin; 1781f14a1c24SBarry Smith ierr = ISGetLocalSize(is,&N);CHKERRQ(ierr); 17820ac07820SSatish Balay ierr = ISGetIndices(is,&rows);CHKERRQ(ierr); 17830ac07820SSatish Balay 17840ac07820SSatish Balay /* first count number of contributors to each processor */ 1785b24ad042SBarry Smith ierr = PetscMalloc(2*size*sizeof(PetscInt),&nprocs);CHKERRQ(ierr); 1786b24ad042SBarry Smith ierr = PetscMemzero(nprocs,2*size*sizeof(PetscInt));CHKERRQ(ierr); 1787b24ad042SBarry Smith ierr = PetscMalloc((N+1)*sizeof(PetscInt),&owner);CHKERRQ(ierr); /* see note*/ 17886543fbbaSBarry Smith j = 0; 17890ac07820SSatish Balay for (i=0; i<N; i++) { 17906543fbbaSBarry Smith if (lastidx > (idx = rows[i])) j = 0; 17916543fbbaSBarry Smith lastidx = idx; 17926543fbbaSBarry Smith for (; j<size; j++) { 17930ac07820SSatish Balay if (idx >= owners[j]*bs && idx < owners[j+1]*bs) { 17946543fbbaSBarry Smith nprocs[2*j]++; 17956543fbbaSBarry Smith nprocs[2*j+1] = 1; 17966543fbbaSBarry Smith owner[i] = j; 17976543fbbaSBarry Smith #if defined(PETSC_DEBUG) 17986543fbbaSBarry Smith found = PETSC_TRUE; 17996543fbbaSBarry Smith #endif 18006543fbbaSBarry Smith break; 18010ac07820SSatish Balay } 18020ac07820SSatish Balay } 18036543fbbaSBarry Smith #if defined(PETSC_DEBUG) 180429bbc08cSBarry Smith if (!found) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Index out of range"); 18056543fbbaSBarry Smith found = PETSC_FALSE; 18066543fbbaSBarry Smith #endif 18070ac07820SSatish Balay } 1808c1dc657dSBarry Smith nsends = 0; for (i=0; i<size; i++) { nsends += nprocs[2*i+1];} 18090ac07820SSatish Balay 18100ac07820SSatish Balay /* inform other processors of number of messages and max length*/ 1811c1dc657dSBarry Smith ierr = PetscMaxSum(comm,nprocs,&nmax,&nrecvs);CHKERRQ(ierr); 18120ac07820SSatish Balay 18130ac07820SSatish Balay /* post receives: */ 1814b24ad042SBarry Smith ierr = PetscMalloc((nrecvs+1)*(nmax+1)*sizeof(PetscInt),&rvalues);CHKERRQ(ierr); 1815b0a32e0cSBarry Smith ierr = PetscMalloc((nrecvs+1)*sizeof(MPI_Request),&recv_waits);CHKERRQ(ierr); 18160ac07820SSatish Balay for (i=0; i<nrecvs; i++) { 1817b24ad042SBarry Smith ierr = MPI_Irecv(rvalues+nmax*i,nmax,MPIU_INT,MPI_ANY_SOURCE,tag,comm,recv_waits+i);CHKERRQ(ierr); 18180ac07820SSatish Balay } 18190ac07820SSatish Balay 18200ac07820SSatish Balay /* do sends: 18210ac07820SSatish Balay 1) starts[i] gives the starting index in svalues for stuff going to 18220ac07820SSatish Balay the ith processor 18230ac07820SSatish Balay */ 1824b24ad042SBarry Smith ierr = PetscMalloc((N+1)*sizeof(PetscInt),&svalues);CHKERRQ(ierr); 1825b0a32e0cSBarry Smith ierr = PetscMalloc((nsends+1)*sizeof(MPI_Request),&send_waits);CHKERRQ(ierr); 1826b24ad042SBarry Smith ierr = PetscMalloc((size+1)*sizeof(PetscInt),&starts);CHKERRQ(ierr); 18270ac07820SSatish Balay starts[0] = 0; 1828c1dc657dSBarry Smith for (i=1; i<size; i++) { starts[i] = starts[i-1] + nprocs[2*i-2];} 18290ac07820SSatish Balay for (i=0; i<N; i++) { 18300ac07820SSatish Balay svalues[starts[owner[i]]++] = rows[i]; 18310ac07820SSatish Balay } 18326831982aSBarry Smith ierr = ISRestoreIndices(is,&rows);CHKERRQ(ierr); 18330ac07820SSatish Balay 18340ac07820SSatish Balay starts[0] = 0; 1835c1dc657dSBarry Smith for (i=1; i<size+1; i++) { starts[i] = starts[i-1] + nprocs[2*i-2];} 18360ac07820SSatish Balay count = 0; 18370ac07820SSatish Balay for (i=0; i<size; i++) { 1838c1dc657dSBarry Smith if (nprocs[2*i+1]) { 1839b24ad042SBarry Smith ierr = MPI_Isend(svalues+starts[i],nprocs[2*i],MPIU_INT,i,tag,comm,send_waits+count++);CHKERRQ(ierr); 18400ac07820SSatish Balay } 18410ac07820SSatish Balay } 1842606d414cSSatish Balay ierr = PetscFree(starts);CHKERRQ(ierr); 18430ac07820SSatish Balay 18440ac07820SSatish Balay base = owners[rank]*bs; 18450ac07820SSatish Balay 18460ac07820SSatish Balay /* wait on receives */ 1847b24ad042SBarry Smith ierr = PetscMalloc(2*(nrecvs+1)*sizeof(PetscInt),&lens);CHKERRQ(ierr); 18480ac07820SSatish Balay source = lens + nrecvs; 18490ac07820SSatish Balay count = nrecvs; slen = 0; 18500ac07820SSatish Balay while (count) { 1851ca161407SBarry Smith ierr = MPI_Waitany(nrecvs,recv_waits,&imdex,&recv_status);CHKERRQ(ierr); 18520ac07820SSatish Balay /* unpack receives into our local space */ 1853b24ad042SBarry Smith ierr = MPI_Get_count(&recv_status,MPIU_INT,&n);CHKERRQ(ierr); 18540ac07820SSatish Balay source[imdex] = recv_status.MPI_SOURCE; 18550ac07820SSatish Balay lens[imdex] = n; 18560ac07820SSatish Balay slen += n; 18570ac07820SSatish Balay count--; 18580ac07820SSatish Balay } 1859606d414cSSatish Balay ierr = PetscFree(recv_waits);CHKERRQ(ierr); 18600ac07820SSatish Balay 18610ac07820SSatish Balay /* move the data into the send scatter */ 1862b24ad042SBarry Smith ierr = PetscMalloc((slen+1)*sizeof(PetscInt),&lrows);CHKERRQ(ierr); 18630ac07820SSatish Balay count = 0; 18640ac07820SSatish Balay for (i=0; i<nrecvs; i++) { 18650ac07820SSatish Balay values = rvalues + i*nmax; 18660ac07820SSatish Balay for (j=0; j<lens[i]; j++) { 18670ac07820SSatish Balay lrows[count++] = values[j] - base; 18680ac07820SSatish Balay } 18690ac07820SSatish Balay } 1870606d414cSSatish Balay ierr = PetscFree(rvalues);CHKERRQ(ierr); 1871606d414cSSatish Balay ierr = PetscFree(lens);CHKERRQ(ierr); 1872606d414cSSatish Balay ierr = PetscFree(owner);CHKERRQ(ierr); 1873606d414cSSatish Balay ierr = PetscFree(nprocs);CHKERRQ(ierr); 18740ac07820SSatish Balay 18750ac07820SSatish Balay /* actually zap the local rows */ 1876029af93fSBarry Smith ierr = ISCreateGeneral(PETSC_COMM_SELF,slen,lrows,&istmp);CHKERRQ(ierr); 187752e6d16bSBarry Smith ierr = PetscLogObjectParent(A,istmp);CHKERRQ(ierr); 1878a07cd24cSSatish Balay 187972dacd9aSBarry Smith /* 188072dacd9aSBarry Smith Zero the required rows. If the "diagonal block" of the matrix 188172dacd9aSBarry Smith is square and the user wishes to set the diagonal we use seperate 188272dacd9aSBarry Smith code so that MatSetValues() is not called for each diagonal allocating 188372dacd9aSBarry Smith new memory, thus calling lots of mallocs and slowing things down. 188472dacd9aSBarry Smith 188572dacd9aSBarry Smith Contributed by: Mathew Knepley 188672dacd9aSBarry Smith */ 18879c957beeSSatish Balay /* must zero l->B before l->A because the (diag) case below may put values into l->B*/ 18886fa18ffdSBarry Smith ierr = MatZeroRows_SeqBAIJ(l->B,istmp,0);CHKERRQ(ierr); 18899c957beeSSatish Balay if (diag && (l->A->M == l->A->N)) { 18906fa18ffdSBarry Smith ierr = MatZeroRows_SeqBAIJ(l->A,istmp,diag);CHKERRQ(ierr); 18919c957beeSSatish Balay } else if (diag) { 18926fa18ffdSBarry Smith ierr = MatZeroRows_SeqBAIJ(l->A,istmp,0);CHKERRQ(ierr); 1893fa46199cSSatish Balay if (((Mat_SeqBAIJ*)l->A->data)->nonew) { 189429bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"MatZeroRows() on rectangular matrices cannot be used with the Mat options \n\ 1895fa46199cSSatish Balay MAT_NO_NEW_NONZERO_LOCATIONS,MAT_NEW_NONZERO_LOCATION_ERR,MAT_NEW_NONZERO_ALLOCATION_ERR"); 18966525c446SSatish Balay } 1897a07cd24cSSatish Balay for (i=0; i<slen; i++) { 1898a07cd24cSSatish Balay row = lrows[i] + rstart_bs; 18993f11ea53SBarry Smith ierr = MatSetValues(A,1,&row,1,&row,diag,INSERT_VALUES);CHKERRQ(ierr); 1900a07cd24cSSatish Balay } 1901a07cd24cSSatish Balay ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 1902a07cd24cSSatish Balay ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 19039c957beeSSatish Balay } else { 19046fa18ffdSBarry Smith ierr = MatZeroRows_SeqBAIJ(l->A,istmp,0);CHKERRQ(ierr); 1905a07cd24cSSatish Balay } 19069c957beeSSatish Balay 19079c957beeSSatish Balay ierr = ISDestroy(istmp);CHKERRQ(ierr); 1908606d414cSSatish Balay ierr = PetscFree(lrows);CHKERRQ(ierr); 1909a07cd24cSSatish Balay 19100ac07820SSatish Balay /* wait on sends */ 19110ac07820SSatish Balay if (nsends) { 191282502324SSatish Balay ierr = PetscMalloc(nsends*sizeof(MPI_Status),&send_status);CHKERRQ(ierr); 1913ca161407SBarry Smith ierr = MPI_Waitall(nsends,send_waits,send_status);CHKERRQ(ierr); 1914606d414cSSatish Balay ierr = PetscFree(send_status);CHKERRQ(ierr); 19150ac07820SSatish Balay } 1916606d414cSSatish Balay ierr = PetscFree(send_waits);CHKERRQ(ierr); 1917606d414cSSatish Balay ierr = PetscFree(svalues);CHKERRQ(ierr); 19180ac07820SSatish Balay 19193a40ed3dSBarry Smith PetscFunctionReturn(0); 19200ac07820SSatish Balay } 192172dacd9aSBarry Smith 19224a2ae208SSatish Balay #undef __FUNCT__ 19234a2ae208SSatish Balay #define __FUNCT__ "MatPrintHelp_MPIBAIJ" 1924dfbe8321SBarry Smith PetscErrorCode MatPrintHelp_MPIBAIJ(Mat A) 1925ba4ca20aSSatish Balay { 1926ba4ca20aSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 192725fdafccSSatish Balay MPI_Comm comm = A->comm; 1928b24ad042SBarry Smith static PetscTruth called = PETSC_FALSE; 1929dfbe8321SBarry Smith PetscErrorCode ierr; 1930ba4ca20aSSatish Balay 1931d64ed03dSBarry Smith PetscFunctionBegin; 19323a40ed3dSBarry Smith if (!a->rank) { 19333a40ed3dSBarry Smith ierr = MatPrintHelp_SeqBAIJ(a->A);CHKERRQ(ierr); 193425fdafccSSatish Balay } 1935b24ad042SBarry Smith if (called) {PetscFunctionReturn(0);} else called = PETSC_TRUE; 1936d132466eSBarry Smith ierr = (*PetscHelpPrintf)(comm," Options for MATMPIBAIJ matrix format (the defaults):\n");CHKERRQ(ierr); 1937d132466eSBarry Smith ierr = (*PetscHelpPrintf)(comm," -mat_use_hash_table <factor>: Use hashtable for efficient matrix assembly\n");CHKERRQ(ierr); 19383a40ed3dSBarry Smith PetscFunctionReturn(0); 1939ba4ca20aSSatish Balay } 19400ac07820SSatish Balay 19414a2ae208SSatish Balay #undef __FUNCT__ 19424a2ae208SSatish Balay #define __FUNCT__ "MatSetUnfactored_MPIBAIJ" 1943dfbe8321SBarry Smith PetscErrorCode MatSetUnfactored_MPIBAIJ(Mat A) 1944bb5a7306SBarry Smith { 1945bb5a7306SBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1946dfbe8321SBarry Smith PetscErrorCode ierr; 1947d64ed03dSBarry Smith 1948d64ed03dSBarry Smith PetscFunctionBegin; 1949bb5a7306SBarry Smith ierr = MatSetUnfactored(a->A);CHKERRQ(ierr); 19503a40ed3dSBarry Smith PetscFunctionReturn(0); 1951bb5a7306SBarry Smith } 1952bb5a7306SBarry Smith 19536849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIBAIJ(Mat,MatDuplicateOption,Mat *); 19540ac07820SSatish Balay 19554a2ae208SSatish Balay #undef __FUNCT__ 19564a2ae208SSatish Balay #define __FUNCT__ "MatEqual_MPIBAIJ" 1957dfbe8321SBarry Smith PetscErrorCode MatEqual_MPIBAIJ(Mat A,Mat B,PetscTruth *flag) 19587fc3c18eSBarry Smith { 19597fc3c18eSBarry Smith Mat_MPIBAIJ *matB = (Mat_MPIBAIJ*)B->data,*matA = (Mat_MPIBAIJ*)A->data; 19607fc3c18eSBarry Smith Mat a,b,c,d; 19617fc3c18eSBarry Smith PetscTruth flg; 1962dfbe8321SBarry Smith PetscErrorCode ierr; 19637fc3c18eSBarry Smith 19647fc3c18eSBarry Smith PetscFunctionBegin; 19657fc3c18eSBarry Smith a = matA->A; b = matA->B; 19667fc3c18eSBarry Smith c = matB->A; d = matB->B; 19677fc3c18eSBarry Smith 19687fc3c18eSBarry Smith ierr = MatEqual(a,c,&flg);CHKERRQ(ierr); 1969abc0a331SBarry Smith if (flg) { 19707fc3c18eSBarry Smith ierr = MatEqual(b,d,&flg);CHKERRQ(ierr); 19717fc3c18eSBarry Smith } 19727fc3c18eSBarry Smith ierr = MPI_Allreduce(&flg,flag,1,MPI_INT,MPI_LAND,A->comm);CHKERRQ(ierr); 19737fc3c18eSBarry Smith PetscFunctionReturn(0); 19747fc3c18eSBarry Smith } 19757fc3c18eSBarry Smith 1976273d9f13SBarry Smith 19774a2ae208SSatish Balay #undef __FUNCT__ 19784a2ae208SSatish Balay #define __FUNCT__ "MatSetUpPreallocation_MPIBAIJ" 1979dfbe8321SBarry Smith PetscErrorCode MatSetUpPreallocation_MPIBAIJ(Mat A) 1980273d9f13SBarry Smith { 1981dfbe8321SBarry Smith PetscErrorCode ierr; 1982273d9f13SBarry Smith 1983273d9f13SBarry Smith PetscFunctionBegin; 1984273d9f13SBarry Smith ierr = MatMPIBAIJSetPreallocation(A,1,PETSC_DEFAULT,0,PETSC_DEFAULT,0);CHKERRQ(ierr); 1985273d9f13SBarry Smith PetscFunctionReturn(0); 1986273d9f13SBarry Smith } 1987273d9f13SBarry Smith 198879bdfe76SSatish Balay /* -------------------------------------------------------------------*/ 1989cc2dc46cSBarry Smith static struct _MatOps MatOps_Values = { 1990cc2dc46cSBarry Smith MatSetValues_MPIBAIJ, 1991cc2dc46cSBarry Smith MatGetRow_MPIBAIJ, 1992cc2dc46cSBarry Smith MatRestoreRow_MPIBAIJ, 1993cc2dc46cSBarry Smith MatMult_MPIBAIJ, 199497304618SKris Buschelman /* 4*/ MatMultAdd_MPIBAIJ, 19957c922b88SBarry Smith MatMultTranspose_MPIBAIJ, 19967c922b88SBarry Smith MatMultTransposeAdd_MPIBAIJ, 1997cc2dc46cSBarry Smith 0, 1998cc2dc46cSBarry Smith 0, 1999cc2dc46cSBarry Smith 0, 200097304618SKris Buschelman /*10*/ 0, 2001cc2dc46cSBarry Smith 0, 2002cc2dc46cSBarry Smith 0, 2003cc2dc46cSBarry Smith 0, 2004cc2dc46cSBarry Smith MatTranspose_MPIBAIJ, 200597304618SKris Buschelman /*15*/ MatGetInfo_MPIBAIJ, 20067fc3c18eSBarry Smith MatEqual_MPIBAIJ, 2007cc2dc46cSBarry Smith MatGetDiagonal_MPIBAIJ, 2008cc2dc46cSBarry Smith MatDiagonalScale_MPIBAIJ, 2009cc2dc46cSBarry Smith MatNorm_MPIBAIJ, 201097304618SKris Buschelman /*20*/ MatAssemblyBegin_MPIBAIJ, 2011cc2dc46cSBarry Smith MatAssemblyEnd_MPIBAIJ, 2012cc2dc46cSBarry Smith 0, 2013cc2dc46cSBarry Smith MatSetOption_MPIBAIJ, 2014cc2dc46cSBarry Smith MatZeroEntries_MPIBAIJ, 201597304618SKris Buschelman /*25*/ MatZeroRows_MPIBAIJ, 2016cc2dc46cSBarry Smith 0, 2017cc2dc46cSBarry Smith 0, 2018cc2dc46cSBarry Smith 0, 2019cc2dc46cSBarry Smith 0, 202097304618SKris Buschelman /*30*/ MatSetUpPreallocation_MPIBAIJ, 2021273d9f13SBarry Smith 0, 2022cc2dc46cSBarry Smith 0, 2023cc2dc46cSBarry Smith 0, 2024cc2dc46cSBarry Smith 0, 202597304618SKris Buschelman /*35*/ MatDuplicate_MPIBAIJ, 2026cc2dc46cSBarry Smith 0, 2027cc2dc46cSBarry Smith 0, 2028cc2dc46cSBarry Smith 0, 2029cc2dc46cSBarry Smith 0, 203097304618SKris Buschelman /*40*/ 0, 2031cc2dc46cSBarry Smith MatGetSubMatrices_MPIBAIJ, 2032cc2dc46cSBarry Smith MatIncreaseOverlap_MPIBAIJ, 2033cc2dc46cSBarry Smith MatGetValues_MPIBAIJ, 2034cc2dc46cSBarry Smith 0, 203597304618SKris Buschelman /*45*/ MatPrintHelp_MPIBAIJ, 2036cc2dc46cSBarry Smith MatScale_MPIBAIJ, 2037cc2dc46cSBarry Smith 0, 2038cc2dc46cSBarry Smith 0, 2039cc2dc46cSBarry Smith 0, 2040521d7252SBarry Smith /*50*/ 0, 2041cc2dc46cSBarry Smith 0, 2042cc2dc46cSBarry Smith 0, 2043cc2dc46cSBarry Smith 0, 2044cc2dc46cSBarry Smith 0, 204597304618SKris Buschelman /*55*/ 0, 2046cc2dc46cSBarry Smith 0, 2047cc2dc46cSBarry Smith MatSetUnfactored_MPIBAIJ, 2048cc2dc46cSBarry Smith 0, 2049cc2dc46cSBarry Smith MatSetValuesBlocked_MPIBAIJ, 205097304618SKris Buschelman /*60*/ 0, 2051f14a1c24SBarry Smith MatDestroy_MPIBAIJ, 2052f14a1c24SBarry Smith MatView_MPIBAIJ, 20538a124369SBarry Smith MatGetPetscMaps_Petsc, 20547843d17aSBarry Smith 0, 205597304618SKris Buschelman /*65*/ 0, 20567843d17aSBarry Smith 0, 20577843d17aSBarry Smith 0, 20587843d17aSBarry Smith 0, 20597843d17aSBarry Smith 0, 206097304618SKris Buschelman /*70*/ MatGetRowMax_MPIBAIJ, 20617843d17aSBarry Smith 0, 206297304618SKris Buschelman 0, 206397304618SKris Buschelman 0, 206497304618SKris Buschelman 0, 206597304618SKris Buschelman /*75*/ 0, 206697304618SKris Buschelman 0, 206797304618SKris Buschelman 0, 206897304618SKris Buschelman 0, 206997304618SKris Buschelman 0, 207097304618SKris Buschelman /*80*/ 0, 207197304618SKris Buschelman 0, 207297304618SKris Buschelman 0, 207397304618SKris Buschelman 0, 2074865e5f61SKris Buschelman MatLoad_MPIBAIJ, 2075865e5f61SKris Buschelman /*85*/ 0, 2076865e5f61SKris Buschelman 0, 2077865e5f61SKris Buschelman 0, 2078865e5f61SKris Buschelman 0, 2079865e5f61SKris Buschelman 0, 2080865e5f61SKris Buschelman /*90*/ 0, 2081865e5f61SKris Buschelman 0, 2082865e5f61SKris Buschelman 0, 2083865e5f61SKris Buschelman 0, 2084865e5f61SKris Buschelman 0, 2085865e5f61SKris Buschelman /*95*/ 0, 2086865e5f61SKris Buschelman 0, 2087865e5f61SKris Buschelman 0, 2088865e5f61SKris Buschelman 0}; 208979bdfe76SSatish Balay 20905ef9f2a5SBarry Smith 2091e18c124aSSatish Balay EXTERN_C_BEGIN 20924a2ae208SSatish Balay #undef __FUNCT__ 20934a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonalBlock_MPIBAIJ" 2094dfbe8321SBarry Smith PetscErrorCode MatGetDiagonalBlock_MPIBAIJ(Mat A,PetscTruth *iscopy,MatReuse reuse,Mat *a) 20955ef9f2a5SBarry Smith { 20965ef9f2a5SBarry Smith PetscFunctionBegin; 20975ef9f2a5SBarry Smith *a = ((Mat_MPIBAIJ *)A->data)->A; 20985ef9f2a5SBarry Smith *iscopy = PETSC_FALSE; 20995ef9f2a5SBarry Smith PetscFunctionReturn(0); 21005ef9f2a5SBarry Smith } 2101e18c124aSSatish Balay EXTERN_C_END 210279bdfe76SSatish Balay 2103273d9f13SBarry Smith EXTERN_C_BEGIN 2104ceb03754SKris Buschelman extern int MatConvert_MPIBAIJ_MPISBAIJ(Mat,const MatType,MatReuse,Mat*); 2105d94109b8SHong Zhang EXTERN_C_END 2106d94109b8SHong Zhang 2107aac34f13SBarry Smith #undef __FUNCT__ 2108aac34f13SBarry Smith #define __FUNCT__ "MatMPIBAIJSetPreallocationCSR_MPIBAIJ" 2109aac34f13SBarry Smith PetscErrorCode MatMPIBAIJSetPreallocationCSR_MPIBAIJ(Mat B,PetscInt bs,const PetscInt I[],const PetscInt J[],const PetscScalar v[]) 2110aac34f13SBarry Smith { 2111aac34f13SBarry Smith Mat_MPIBAIJ *b = (Mat_MPIBAIJ *)B->data; 2112aac34f13SBarry Smith PetscInt m = B->m/bs,cstart = b->cstart, cend = b->cend,j,nnz,i,d; 2113aac34f13SBarry Smith PetscInt *d_nnz,*o_nnz,nnz_max = 0,rstart = b->rstart,ii; 2114aac34f13SBarry Smith const PetscInt *JJ; 2115aac34f13SBarry Smith PetscScalar *values; 2116aac34f13SBarry Smith PetscErrorCode ierr; 2117aac34f13SBarry Smith 2118aac34f13SBarry Smith PetscFunctionBegin; 2119aac34f13SBarry Smith #if defined(PETSC_OPT_g) 2120aac34f13SBarry Smith if (I[0]) SETERRQ1(PETSC_ERR_ARG_RANGE,"I[0] must be 0 it is %D",I[0]); 2121aac34f13SBarry Smith #endif 2122aac34f13SBarry Smith ierr = PetscMalloc((2*m+1)*sizeof(PetscInt),&d_nnz);CHKERRQ(ierr); 2123aac34f13SBarry Smith o_nnz = d_nnz + m; 2124aac34f13SBarry Smith 2125aac34f13SBarry Smith for (i=0; i<m; i++) { 2126aac34f13SBarry Smith nnz = I[i+1]- I[i]; 2127aac34f13SBarry Smith JJ = J + I[i]; 2128aac34f13SBarry Smith nnz_max = PetscMax(nnz_max,nnz); 2129aac34f13SBarry Smith #if defined(PETSC_OPT_g) 2130aac34f13SBarry Smith if (nnz < 0) SETERRQ1(PETSC_ERR_ARG_RANGE,"Local row %D has a negative %D number of columns",i,nnz); 2131aac34f13SBarry Smith #endif 2132aac34f13SBarry Smith for (j=0; j<nnz; j++) { 2133aac34f13SBarry Smith if (*JJ >= cstart) break; 2134aac34f13SBarry Smith JJ++; 2135aac34f13SBarry Smith } 2136aac34f13SBarry Smith d = 0; 2137aac34f13SBarry Smith for (; j<nnz; j++) { 2138aac34f13SBarry Smith if (*JJ++ >= cend) break; 2139aac34f13SBarry Smith d++; 2140aac34f13SBarry Smith } 2141aac34f13SBarry Smith d_nnz[i] = d; 2142aac34f13SBarry Smith o_nnz[i] = nnz - d; 2143aac34f13SBarry Smith } 2144aac34f13SBarry Smith ierr = MatMPIBAIJSetPreallocation(B,bs,0,d_nnz,0,o_nnz);CHKERRQ(ierr); 2145aac34f13SBarry Smith ierr = PetscFree(d_nnz);CHKERRQ(ierr); 2146aac34f13SBarry Smith 2147aac34f13SBarry Smith if (v) values = (PetscScalar*)v; 2148aac34f13SBarry Smith else { 2149aac34f13SBarry Smith ierr = PetscMalloc(bs*bs*(nnz_max+1)*sizeof(PetscScalar),&values);CHKERRQ(ierr); 2150aac34f13SBarry Smith ierr = PetscMemzero(values,bs*bs*nnz_max*sizeof(PetscScalar));CHKERRQ(ierr); 2151aac34f13SBarry Smith } 2152aac34f13SBarry Smith 2153aac34f13SBarry Smith ierr = MatSetOption(B,MAT_COLUMNS_SORTED);CHKERRQ(ierr); 2154aac34f13SBarry Smith for (i=0; i<m; i++) { 2155aac34f13SBarry Smith ii = i + rstart; 2156aac34f13SBarry Smith nnz = I[i+1]- I[i]; 2157aac34f13SBarry Smith ierr = MatSetValuesBlocked_MPIBAIJ(B,1,&ii,nnz,J+I[i],values,INSERT_VALUES);CHKERRQ(ierr); 2158aac34f13SBarry Smith } 2159aac34f13SBarry Smith ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 2160aac34f13SBarry Smith ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 2161aac34f13SBarry Smith ierr = MatSetOption(B,MAT_COLUMNS_UNSORTED);CHKERRQ(ierr); 2162aac34f13SBarry Smith 2163aac34f13SBarry Smith if (!v) { 2164aac34f13SBarry Smith ierr = PetscFree(values);CHKERRQ(ierr); 2165aac34f13SBarry Smith } 2166aac34f13SBarry Smith PetscFunctionReturn(0); 2167aac34f13SBarry Smith } 2168aac34f13SBarry Smith 2169aac34f13SBarry Smith #undef __FUNCT__ 2170aac34f13SBarry Smith #define __FUNCT__ "MatMPIBAIJSetPreallocationCSR" 2171aac34f13SBarry Smith /*@C 2172aac34f13SBarry Smith MatMPIBAIJSetPreallocationCSR - Allocates memory for a sparse parallel matrix in AIJ format 2173aac34f13SBarry Smith (the default parallel PETSc format). 2174aac34f13SBarry Smith 2175aac34f13SBarry Smith Collective on MPI_Comm 2176aac34f13SBarry Smith 2177aac34f13SBarry Smith Input Parameters: 2178aac34f13SBarry Smith + A - the matrix 2179aac34f13SBarry Smith . i - the indices into j for the start of each local row (starts with zero) 2180aac34f13SBarry Smith . j - the column indices for each local row (starts with zero) these must be sorted for each row 2181aac34f13SBarry Smith - v - optional values in the matrix 2182aac34f13SBarry Smith 2183aac34f13SBarry Smith Level: developer 2184aac34f13SBarry Smith 2185aac34f13SBarry Smith .keywords: matrix, aij, compressed row, sparse, parallel 2186aac34f13SBarry Smith 2187aac34f13SBarry Smith .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatMPIBAIJSetPreallocation(), MatCreateMPIAIJ(), MPIAIJ 2188aac34f13SBarry Smith @*/ 2189aac34f13SBarry Smith PetscErrorCode MatMPIBAIJSetPreallocationCSR(Mat B,PetscInt bs,const PetscInt i[],const PetscInt j[], const PetscScalar v[]) 2190aac34f13SBarry Smith { 2191aac34f13SBarry Smith PetscErrorCode ierr,(*f)(Mat,PetscInt,const PetscInt[],const PetscInt[],const PetscScalar[]); 2192aac34f13SBarry Smith 2193aac34f13SBarry Smith PetscFunctionBegin; 2194aac34f13SBarry Smith ierr = PetscObjectQueryFunction((PetscObject)B,"MatMPIBAIJSetPreallocationCSR_C",(void (**)(void))&f);CHKERRQ(ierr); 2195aac34f13SBarry Smith if (f) { 2196aac34f13SBarry Smith ierr = (*f)(B,bs,i,j,v);CHKERRQ(ierr); 2197aac34f13SBarry Smith } 2198aac34f13SBarry Smith PetscFunctionReturn(0); 2199aac34f13SBarry Smith } 2200aac34f13SBarry Smith 2201d94109b8SHong Zhang EXTERN_C_BEGIN 22024a2ae208SSatish Balay #undef __FUNCT__ 2203a23d5eceSKris Buschelman #define __FUNCT__ "MatMPIBAIJSetPreallocation_MPIBAIJ" 2204b24ad042SBarry Smith PetscErrorCode MatMPIBAIJSetPreallocation_MPIBAIJ(Mat B,PetscInt bs,PetscInt d_nz,PetscInt *d_nnz,PetscInt o_nz,PetscInt *o_nnz) 2205a23d5eceSKris Buschelman { 2206a23d5eceSKris Buschelman Mat_MPIBAIJ *b; 2207dfbe8321SBarry Smith PetscErrorCode ierr; 2208b24ad042SBarry Smith PetscInt i; 2209a23d5eceSKris Buschelman 2210a23d5eceSKris Buschelman PetscFunctionBegin; 2211a23d5eceSKris Buschelman B->preallocated = PETSC_TRUE; 2212a23d5eceSKris Buschelman ierr = PetscOptionsGetInt(PETSC_NULL,"-mat_block_size",&bs,PETSC_NULL);CHKERRQ(ierr); 2213a23d5eceSKris Buschelman 2214a23d5eceSKris Buschelman if (bs < 1) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Invalid block size specified, must be positive"); 2215a23d5eceSKris Buschelman if (d_nz == PETSC_DEFAULT || d_nz == PETSC_DECIDE) d_nz = 5; 2216a23d5eceSKris Buschelman if (o_nz == PETSC_DEFAULT || o_nz == PETSC_DECIDE) o_nz = 2; 221777431f27SBarry Smith if (d_nz < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"d_nz cannot be less than 0: value %D",d_nz); 221877431f27SBarry Smith if (o_nz < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"o_nz cannot be less than 0: value %D",o_nz); 2219a23d5eceSKris Buschelman if (d_nnz) { 2220a23d5eceSKris Buschelman for (i=0; i<B->m/bs; i++) { 222177431f27SBarry Smith if (d_nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"d_nnz cannot be less than -1: local row %D value %D",i,d_nnz[i]); 2222a23d5eceSKris Buschelman } 2223a23d5eceSKris Buschelman } 2224a23d5eceSKris Buschelman if (o_nnz) { 2225a23d5eceSKris Buschelman for (i=0; i<B->m/bs; i++) { 222677431f27SBarry Smith if (o_nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"o_nnz cannot be less than -1: local row %D value %D",i,o_nnz[i]); 2227a23d5eceSKris Buschelman } 2228a23d5eceSKris Buschelman } 2229a23d5eceSKris Buschelman 2230a23d5eceSKris Buschelman ierr = PetscSplitOwnershipBlock(B->comm,bs,&B->m,&B->M);CHKERRQ(ierr); 2231a23d5eceSKris Buschelman ierr = PetscSplitOwnershipBlock(B->comm,bs,&B->n,&B->N);CHKERRQ(ierr); 2232a23d5eceSKris Buschelman ierr = PetscMapCreateMPI(B->comm,B->m,B->M,&B->rmap);CHKERRQ(ierr); 2233a23d5eceSKris Buschelman ierr = PetscMapCreateMPI(B->comm,B->n,B->N,&B->cmap);CHKERRQ(ierr); 2234a23d5eceSKris Buschelman 2235a23d5eceSKris Buschelman b = (Mat_MPIBAIJ*)B->data; 2236521d7252SBarry Smith B->bs = bs; 2237a23d5eceSKris Buschelman b->bs2 = bs*bs; 2238a23d5eceSKris Buschelman b->mbs = B->m/bs; 2239a23d5eceSKris Buschelman b->nbs = B->n/bs; 2240a23d5eceSKris Buschelman b->Mbs = B->M/bs; 2241a23d5eceSKris Buschelman b->Nbs = B->N/bs; 2242a23d5eceSKris Buschelman 2243b24ad042SBarry Smith ierr = MPI_Allgather(&b->mbs,1,MPIU_INT,b->rowners+1,1,MPIU_INT,B->comm);CHKERRQ(ierr); 2244a23d5eceSKris Buschelman b->rowners[0] = 0; 2245a23d5eceSKris Buschelman for (i=2; i<=b->size; i++) { 2246a23d5eceSKris Buschelman b->rowners[i] += b->rowners[i-1]; 2247a23d5eceSKris Buschelman } 2248a23d5eceSKris Buschelman b->rstart = b->rowners[b->rank]; 2249a23d5eceSKris Buschelman b->rend = b->rowners[b->rank+1]; 2250a23d5eceSKris Buschelman 2251b24ad042SBarry Smith ierr = MPI_Allgather(&b->nbs,1,MPIU_INT,b->cowners+1,1,MPIU_INT,B->comm);CHKERRQ(ierr); 2252a23d5eceSKris Buschelman b->cowners[0] = 0; 2253a23d5eceSKris Buschelman for (i=2; i<=b->size; i++) { 2254a23d5eceSKris Buschelman b->cowners[i] += b->cowners[i-1]; 2255a23d5eceSKris Buschelman } 2256a23d5eceSKris Buschelman b->cstart = b->cowners[b->rank]; 2257a23d5eceSKris Buschelman b->cend = b->cowners[b->rank+1]; 2258a23d5eceSKris Buschelman 2259a23d5eceSKris Buschelman for (i=0; i<=b->size; i++) { 2260a23d5eceSKris Buschelman b->rowners_bs[i] = b->rowners[i]*bs; 2261a23d5eceSKris Buschelman } 2262a23d5eceSKris Buschelman b->rstart_bs = b->rstart*bs; 2263a23d5eceSKris Buschelman b->rend_bs = b->rend*bs; 2264a23d5eceSKris Buschelman b->cstart_bs = b->cstart*bs; 2265a23d5eceSKris Buschelman b->cend_bs = b->cend*bs; 2266a23d5eceSKris Buschelman 22679c097c71SKris Buschelman ierr = MatCreate(PETSC_COMM_SELF,B->m,B->n,B->m,B->n,&b->A);CHKERRQ(ierr); 22689c097c71SKris Buschelman ierr = MatSetType(b->A,MATSEQBAIJ);CHKERRQ(ierr); 2269c60e587dSKris Buschelman ierr = MatSeqBAIJSetPreallocation(b->A,bs,d_nz,d_nnz);CHKERRQ(ierr); 227052e6d16bSBarry Smith ierr = PetscLogObjectParent(B,b->A);CHKERRQ(ierr); 22719c097c71SKris Buschelman ierr = MatCreate(PETSC_COMM_SELF,B->m,B->N,B->m,B->N,&b->B);CHKERRQ(ierr); 22729c097c71SKris Buschelman ierr = MatSetType(b->B,MATSEQBAIJ);CHKERRQ(ierr); 2273c60e587dSKris Buschelman ierr = MatSeqBAIJSetPreallocation(b->B,bs,o_nz,o_nnz);CHKERRQ(ierr); 227452e6d16bSBarry Smith ierr = PetscLogObjectParent(B,b->B);CHKERRQ(ierr); 2275c60e587dSKris Buschelman 2276a23d5eceSKris Buschelman ierr = MatStashCreate_Private(B->comm,bs,&B->bstash);CHKERRQ(ierr); 2277a23d5eceSKris Buschelman 2278a23d5eceSKris Buschelman PetscFunctionReturn(0); 2279a23d5eceSKris Buschelman } 2280a23d5eceSKris Buschelman EXTERN_C_END 2281a23d5eceSKris Buschelman 2282a23d5eceSKris Buschelman EXTERN_C_BEGIN 2283dfbe8321SBarry Smith EXTERN PetscErrorCode MatDiagonalScaleLocal_MPIBAIJ(Mat,Vec); 2284dfbe8321SBarry Smith EXTERN PetscErrorCode MatSetHashTableFactor_MPIBAIJ(Mat,PetscReal); 228592b32695SKris Buschelman EXTERN_C_END 22865bf65638SKris Buschelman 22870bad9183SKris Buschelman /*MC 2288fafad747SKris Buschelman MATMPIBAIJ - MATMPIBAIJ = "mpibaij" - A matrix type to be used for distributed block sparse matrices. 22890bad9183SKris Buschelman 22900bad9183SKris Buschelman Options Database Keys: 22910bad9183SKris Buschelman . -mat_type mpibaij - sets the matrix type to "mpibaij" during a call to MatSetFromOptions() 22920bad9183SKris Buschelman 22930bad9183SKris Buschelman Level: beginner 22940bad9183SKris Buschelman 22950bad9183SKris Buschelman .seealso: MatCreateMPIBAIJ 22960bad9183SKris Buschelman M*/ 22970bad9183SKris Buschelman 229892b32695SKris Buschelman EXTERN_C_BEGIN 2299a23d5eceSKris Buschelman #undef __FUNCT__ 23004a2ae208SSatish Balay #define __FUNCT__ "MatCreate_MPIBAIJ" 2301dfbe8321SBarry Smith PetscErrorCode MatCreate_MPIBAIJ(Mat B) 2302273d9f13SBarry Smith { 2303273d9f13SBarry Smith Mat_MPIBAIJ *b; 2304dfbe8321SBarry Smith PetscErrorCode ierr; 2305273d9f13SBarry Smith PetscTruth flg; 2306273d9f13SBarry Smith 2307273d9f13SBarry Smith PetscFunctionBegin; 230882502324SSatish Balay ierr = PetscNew(Mat_MPIBAIJ,&b);CHKERRQ(ierr); 230982502324SSatish Balay B->data = (void*)b; 231082502324SSatish Balay 2311273d9f13SBarry Smith ierr = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr); 2312273d9f13SBarry Smith B->mapping = 0; 2313273d9f13SBarry Smith B->factor = 0; 2314273d9f13SBarry Smith B->assembled = PETSC_FALSE; 2315273d9f13SBarry Smith 2316273d9f13SBarry Smith B->insertmode = NOT_SET_VALUES; 2317273d9f13SBarry Smith ierr = MPI_Comm_rank(B->comm,&b->rank);CHKERRQ(ierr); 2318273d9f13SBarry Smith ierr = MPI_Comm_size(B->comm,&b->size);CHKERRQ(ierr); 2319273d9f13SBarry Smith 2320273d9f13SBarry Smith /* build local table of row and column ownerships */ 2321b24ad042SBarry Smith ierr = PetscMalloc(3*(b->size+2)*sizeof(PetscInt),&b->rowners);CHKERRQ(ierr); 232252e6d16bSBarry Smith ierr = PetscLogObjectMemory(B,3*(b->size+2)*sizeof(PetscInt)+sizeof(struct _p_Mat)+sizeof(Mat_MPIBAIJ));CHKERRQ(ierr); 2323273d9f13SBarry Smith b->cowners = b->rowners + b->size + 2; 2324273d9f13SBarry Smith b->rowners_bs = b->cowners + b->size + 2; 2325273d9f13SBarry Smith 2326273d9f13SBarry Smith /* build cache for off array entries formed */ 2327273d9f13SBarry Smith ierr = MatStashCreate_Private(B->comm,1,&B->stash);CHKERRQ(ierr); 2328273d9f13SBarry Smith b->donotstash = PETSC_FALSE; 2329273d9f13SBarry Smith b->colmap = PETSC_NULL; 2330273d9f13SBarry Smith b->garray = PETSC_NULL; 2331273d9f13SBarry Smith b->roworiented = PETSC_TRUE; 2332273d9f13SBarry Smith 2333cfce73b9SSatish Balay #if defined(PETSC_USE_MAT_SINGLE) 2334273d9f13SBarry Smith /* stuff for MatSetValues_XXX in single precision */ 233564a35ccbSBarry Smith b->setvalueslen = 0; 2336273d9f13SBarry Smith b->setvaluescopy = PETSC_NULL; 2337273d9f13SBarry Smith #endif 2338273d9f13SBarry Smith 2339273d9f13SBarry Smith /* stuff used in block assembly */ 2340273d9f13SBarry Smith b->barray = 0; 2341273d9f13SBarry Smith 2342273d9f13SBarry Smith /* stuff used for matrix vector multiply */ 2343273d9f13SBarry Smith b->lvec = 0; 2344273d9f13SBarry Smith b->Mvctx = 0; 2345273d9f13SBarry Smith 2346273d9f13SBarry Smith /* stuff for MatGetRow() */ 2347273d9f13SBarry Smith b->rowindices = 0; 2348273d9f13SBarry Smith b->rowvalues = 0; 2349273d9f13SBarry Smith b->getrowactive = PETSC_FALSE; 2350273d9f13SBarry Smith 2351273d9f13SBarry Smith /* hash table stuff */ 2352273d9f13SBarry Smith b->ht = 0; 2353273d9f13SBarry Smith b->hd = 0; 2354273d9f13SBarry Smith b->ht_size = 0; 2355273d9f13SBarry Smith b->ht_flag = PETSC_FALSE; 2356273d9f13SBarry Smith b->ht_fact = 0; 2357273d9f13SBarry Smith b->ht_total_ct = 0; 2358273d9f13SBarry Smith b->ht_insert_ct = 0; 2359273d9f13SBarry Smith 2360b0a32e0cSBarry Smith ierr = PetscOptionsHasName(PETSC_NULL,"-mat_use_hash_table",&flg);CHKERRQ(ierr); 2361273d9f13SBarry Smith if (flg) { 2362f6275e2eSBarry Smith PetscReal fact = 1.39; 2363273d9f13SBarry Smith ierr = MatSetOption(B,MAT_USE_HASH_TABLE);CHKERRQ(ierr); 236487828ca2SBarry Smith ierr = PetscOptionsGetReal(PETSC_NULL,"-mat_use_hash_table",&fact,PETSC_NULL);CHKERRQ(ierr); 2365273d9f13SBarry Smith if (fact <= 1.0) fact = 1.39; 2366273d9f13SBarry Smith ierr = MatMPIBAIJSetHashTableFactor(B,fact);CHKERRQ(ierr); 236763ba0a88SBarry Smith ierr = PetscLogInfo((0,"MatCreateMPIBAIJ:Hash table Factor used %5.2f\n",fact));CHKERRQ(ierr); 2368273d9f13SBarry Smith } 2369273d9f13SBarry Smith ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatStoreValues_C", 2370273d9f13SBarry Smith "MatStoreValues_MPIBAIJ", 2371273d9f13SBarry Smith MatStoreValues_MPIBAIJ);CHKERRQ(ierr); 2372273d9f13SBarry Smith ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatRetrieveValues_C", 2373273d9f13SBarry Smith "MatRetrieveValues_MPIBAIJ", 2374273d9f13SBarry Smith MatRetrieveValues_MPIBAIJ);CHKERRQ(ierr); 2375273d9f13SBarry Smith ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetDiagonalBlock_C", 2376273d9f13SBarry Smith "MatGetDiagonalBlock_MPIBAIJ", 2377273d9f13SBarry Smith MatGetDiagonalBlock_MPIBAIJ);CHKERRQ(ierr); 2378a23d5eceSKris Buschelman ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatMPIBAIJSetPreallocation_C", 2379a23d5eceSKris Buschelman "MatMPIBAIJSetPreallocation_MPIBAIJ", 2380a23d5eceSKris Buschelman MatMPIBAIJSetPreallocation_MPIBAIJ);CHKERRQ(ierr); 2381aac34f13SBarry Smith ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatMPIBAIJSetPreallocationCSR_C", 2382aac34f13SBarry Smith "MatMPIBAIJSetPreallocationCSR_MPIAIJ", 2383aac34f13SBarry Smith MatMPIBAIJSetPreallocationCSR_MPIBAIJ);CHKERRQ(ierr); 238492b32695SKris Buschelman ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatDiagonalScaleLocal_C", 238592b32695SKris Buschelman "MatDiagonalScaleLocal_MPIBAIJ", 238692b32695SKris Buschelman MatDiagonalScaleLocal_MPIBAIJ);CHKERRQ(ierr); 23875bf65638SKris Buschelman ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatSetHashTableFactor_C", 23885bf65638SKris Buschelman "MatSetHashTableFactor_MPIBAIJ", 23895bf65638SKris Buschelman MatSetHashTableFactor_MPIBAIJ);CHKERRQ(ierr); 2390273d9f13SBarry Smith PetscFunctionReturn(0); 2391273d9f13SBarry Smith } 2392273d9f13SBarry Smith EXTERN_C_END 2393273d9f13SBarry Smith 2394209238afSKris Buschelman /*MC 2395002d173eSKris Buschelman MATBAIJ - MATBAIJ = "baij" - A matrix type to be used for block sparse matrices. 2396209238afSKris Buschelman 2397209238afSKris Buschelman This matrix type is identical to MATSEQBAIJ when constructed with a single process communicator, 2398209238afSKris Buschelman and MATMPIBAIJ otherwise. 2399209238afSKris Buschelman 2400209238afSKris Buschelman Options Database Keys: 2401209238afSKris Buschelman . -mat_type baij - sets the matrix type to "baij" during a call to MatSetFromOptions() 2402209238afSKris Buschelman 2403209238afSKris Buschelman Level: beginner 2404209238afSKris Buschelman 2405aac34f13SBarry Smith .seealso: MatCreateMPIBAIJ(),MATSEQBAIJ,MATMPIBAIJ, MatMPIBAIJSetPreallocation(), MatMPIBAIJSetPreallocationCSR() 2406209238afSKris Buschelman M*/ 2407209238afSKris Buschelman 2408209238afSKris Buschelman EXTERN_C_BEGIN 2409209238afSKris Buschelman #undef __FUNCT__ 2410209238afSKris Buschelman #define __FUNCT__ "MatCreate_BAIJ" 2411dfbe8321SBarry Smith PetscErrorCode MatCreate_BAIJ(Mat A) 2412dfbe8321SBarry Smith { 24136849ba73SBarry Smith PetscErrorCode ierr; 2414b24ad042SBarry Smith PetscMPIInt size; 2415209238afSKris Buschelman 2416209238afSKris Buschelman PetscFunctionBegin; 2417209238afSKris Buschelman ierr = PetscObjectChangeTypeName((PetscObject)A,MATBAIJ);CHKERRQ(ierr); 2418209238afSKris Buschelman ierr = MPI_Comm_size(A->comm,&size);CHKERRQ(ierr); 2419209238afSKris Buschelman if (size == 1) { 2420209238afSKris Buschelman ierr = MatSetType(A,MATSEQBAIJ);CHKERRQ(ierr); 2421209238afSKris Buschelman } else { 2422209238afSKris Buschelman ierr = MatSetType(A,MATMPIBAIJ);CHKERRQ(ierr); 2423209238afSKris Buschelman } 2424209238afSKris Buschelman PetscFunctionReturn(0); 2425209238afSKris Buschelman } 2426209238afSKris Buschelman EXTERN_C_END 2427209238afSKris Buschelman 24284a2ae208SSatish Balay #undef __FUNCT__ 24294a2ae208SSatish Balay #define __FUNCT__ "MatMPIBAIJSetPreallocation" 2430273d9f13SBarry Smith /*@C 2431aac34f13SBarry Smith MatMPIBAIJSetPreallocation - Allocates memory for a sparse parallel matrix in block AIJ format 2432273d9f13SBarry Smith (block compressed row). For good matrix assembly performance 2433273d9f13SBarry Smith the user should preallocate the matrix storage by setting the parameters 2434273d9f13SBarry Smith d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 2435273d9f13SBarry Smith performance can be increased by more than a factor of 50. 2436273d9f13SBarry Smith 2437273d9f13SBarry Smith Collective on Mat 2438273d9f13SBarry Smith 2439273d9f13SBarry Smith Input Parameters: 2440273d9f13SBarry Smith + A - the matrix 2441273d9f13SBarry Smith . bs - size of blockk 2442273d9f13SBarry Smith . d_nz - number of block nonzeros per block row in diagonal portion of local 2443273d9f13SBarry Smith submatrix (same for all local rows) 2444273d9f13SBarry Smith . d_nnz - array containing the number of block nonzeros in the various block rows 2445273d9f13SBarry Smith of the in diagonal portion of the local (possibly different for each block 2446273d9f13SBarry Smith row) or PETSC_NULL. You must leave room for the diagonal entry even if it is zero. 2447273d9f13SBarry Smith . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 2448273d9f13SBarry Smith submatrix (same for all local rows). 2449273d9f13SBarry Smith - o_nnz - array containing the number of nonzeros in the various block rows of the 2450273d9f13SBarry Smith off-diagonal portion of the local submatrix (possibly different for 2451273d9f13SBarry Smith each block row) or PETSC_NULL. 2452273d9f13SBarry Smith 245349a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 2454273d9f13SBarry Smith 2455273d9f13SBarry Smith Options Database Keys: 2456273d9f13SBarry Smith . -mat_no_unroll - uses code that does not unroll the loops in the 2457273d9f13SBarry Smith block calculations (much slower) 2458273d9f13SBarry Smith . -mat_block_size - size of the blocks to use 2459273d9f13SBarry Smith 2460273d9f13SBarry Smith Notes: 2461273d9f13SBarry Smith If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one processor 2462273d9f13SBarry Smith than it must be used on all processors that share the object for that argument. 2463273d9f13SBarry Smith 2464273d9f13SBarry Smith Storage Information: 2465273d9f13SBarry Smith For a square global matrix we define each processor's diagonal portion 2466273d9f13SBarry Smith to be its local rows and the corresponding columns (a square submatrix); 2467273d9f13SBarry Smith each processor's off-diagonal portion encompasses the remainder of the 2468273d9f13SBarry Smith local matrix (a rectangular submatrix). 2469273d9f13SBarry Smith 2470273d9f13SBarry Smith The user can specify preallocated storage for the diagonal part of 2471273d9f13SBarry Smith the local submatrix with either d_nz or d_nnz (not both). Set 2472273d9f13SBarry Smith d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic 2473273d9f13SBarry Smith memory allocation. Likewise, specify preallocated storage for the 2474273d9f13SBarry Smith off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 2475273d9f13SBarry Smith 2476273d9f13SBarry Smith Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 2477273d9f13SBarry Smith the figure below we depict these three local rows and all columns (0-11). 2478273d9f13SBarry Smith 2479273d9f13SBarry Smith .vb 2480273d9f13SBarry Smith 0 1 2 3 4 5 6 7 8 9 10 11 2481273d9f13SBarry Smith ------------------- 2482273d9f13SBarry Smith row 3 | o o o d d d o o o o o o 2483273d9f13SBarry Smith row 4 | o o o d d d o o o o o o 2484273d9f13SBarry Smith row 5 | o o o d d d o o o o o o 2485273d9f13SBarry Smith ------------------- 2486273d9f13SBarry Smith .ve 2487273d9f13SBarry Smith 2488273d9f13SBarry Smith Thus, any entries in the d locations are stored in the d (diagonal) 2489273d9f13SBarry Smith submatrix, and any entries in the o locations are stored in the 2490273d9f13SBarry Smith o (off-diagonal) submatrix. Note that the d and the o submatrices are 2491273d9f13SBarry Smith stored simply in the MATSEQBAIJ format for compressed row storage. 2492273d9f13SBarry Smith 2493273d9f13SBarry Smith Now d_nz should indicate the number of block nonzeros per row in the d matrix, 2494273d9f13SBarry Smith and o_nz should indicate the number of block nonzeros per row in the o matrix. 2495273d9f13SBarry Smith In general, for PDE problems in which most nonzeros are near the diagonal, 2496273d9f13SBarry Smith one expects d_nz >> o_nz. For large problems you MUST preallocate memory 2497273d9f13SBarry Smith or you will get TERRIBLE performance; see the users' manual chapter on 2498273d9f13SBarry Smith matrices. 2499273d9f13SBarry Smith 2500273d9f13SBarry Smith Level: intermediate 2501273d9f13SBarry Smith 2502273d9f13SBarry Smith .keywords: matrix, block, aij, compressed row, sparse, parallel 2503273d9f13SBarry Smith 2504aac34f13SBarry Smith .seealso: MatCreate(), MatCreateSeqBAIJ(), MatSetValues(), MatCreateMPIBAIJ(), MatMPIBAIJSetPreallocationCSR() 2505273d9f13SBarry Smith @*/ 2506b24ad042SBarry Smith PetscErrorCode MatMPIBAIJSetPreallocation(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[]) 2507273d9f13SBarry Smith { 2508b24ad042SBarry Smith PetscErrorCode ierr,(*f)(Mat,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[]); 2509273d9f13SBarry Smith 2510273d9f13SBarry Smith PetscFunctionBegin; 2511a23d5eceSKris Buschelman ierr = PetscObjectQueryFunction((PetscObject)B,"MatMPIBAIJSetPreallocation_C",(void (**)(void))&f);CHKERRQ(ierr); 2512a23d5eceSKris Buschelman if (f) { 2513a23d5eceSKris Buschelman ierr = (*f)(B,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr); 2514273d9f13SBarry Smith } 2515273d9f13SBarry Smith PetscFunctionReturn(0); 2516273d9f13SBarry Smith } 2517273d9f13SBarry Smith 25184a2ae208SSatish Balay #undef __FUNCT__ 25194a2ae208SSatish Balay #define __FUNCT__ "MatCreateMPIBAIJ" 252079bdfe76SSatish Balay /*@C 252179bdfe76SSatish Balay MatCreateMPIBAIJ - Creates a sparse parallel matrix in block AIJ format 252279bdfe76SSatish Balay (block compressed row). For good matrix assembly performance 252379bdfe76SSatish Balay the user should preallocate the matrix storage by setting the parameters 252479bdfe76SSatish Balay d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 252579bdfe76SSatish Balay performance can be increased by more than a factor of 50. 252679bdfe76SSatish Balay 2527db81eaa0SLois Curfman McInnes Collective on MPI_Comm 2528db81eaa0SLois Curfman McInnes 252979bdfe76SSatish Balay Input Parameters: 2530db81eaa0SLois Curfman McInnes + comm - MPI communicator 253179bdfe76SSatish Balay . bs - size of blockk 253279bdfe76SSatish Balay . m - number of local rows (or PETSC_DECIDE to have calculated if M is given) 253392e8d321SLois Curfman McInnes This value should be the same as the local size used in creating the 253492e8d321SLois Curfman McInnes y vector for the matrix-vector product y = Ax. 253592e8d321SLois Curfman McInnes . n - number of local columns (or PETSC_DECIDE to have calculated if N is given) 253692e8d321SLois Curfman McInnes This value should be the same as the local size used in creating the 253792e8d321SLois Curfman McInnes x vector for the matrix-vector product y = Ax. 2538be79a94dSBarry Smith . M - number of global rows (or PETSC_DETERMINE to have calculated if m is given) 2539be79a94dSBarry Smith . N - number of global columns (or PETSC_DETERMINE to have calculated if n is given) 254047a75d0bSBarry Smith . d_nz - number of nonzero blocks per block row in diagonal portion of local 254179bdfe76SSatish Balay submatrix (same for all local rows) 254247a75d0bSBarry Smith . d_nnz - array containing the number of nonzero blocks in the various block rows 254392e8d321SLois Curfman McInnes of the in diagonal portion of the local (possibly different for each block 2544db81eaa0SLois Curfman McInnes row) or PETSC_NULL. You must leave room for the diagonal entry even if it is zero. 254547a75d0bSBarry Smith . o_nz - number of nonzero blocks per block row in the off-diagonal portion of local 254679bdfe76SSatish Balay submatrix (same for all local rows). 254747a75d0bSBarry Smith - o_nnz - array containing the number of nonzero blocks in the various block rows of the 254892e8d321SLois Curfman McInnes off-diagonal portion of the local submatrix (possibly different for 254992e8d321SLois Curfman McInnes each block row) or PETSC_NULL. 255079bdfe76SSatish Balay 255179bdfe76SSatish Balay Output Parameter: 255279bdfe76SSatish Balay . A - the matrix 255379bdfe76SSatish Balay 2554db81eaa0SLois Curfman McInnes Options Database Keys: 2555db81eaa0SLois Curfman McInnes . -mat_no_unroll - uses code that does not unroll the loops in the 2556db81eaa0SLois Curfman McInnes block calculations (much slower) 2557db81eaa0SLois Curfman McInnes . -mat_block_size - size of the blocks to use 25583ffaccefSLois Curfman McInnes 2559b259b22eSLois Curfman McInnes Notes: 256049a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 256149a6f317SBarry Smith 256247a75d0bSBarry Smith A nonzero block is any block that as 1 or more nonzeros in it 256347a75d0bSBarry Smith 256479bdfe76SSatish Balay The user MUST specify either the local or global matrix dimensions 256579bdfe76SSatish Balay (possibly both). 256679bdfe76SSatish Balay 2567be79a94dSBarry Smith If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one processor 2568be79a94dSBarry Smith than it must be used on all processors that share the object for that argument. 2569be79a94dSBarry Smith 257079bdfe76SSatish Balay Storage Information: 257179bdfe76SSatish Balay For a square global matrix we define each processor's diagonal portion 257279bdfe76SSatish Balay to be its local rows and the corresponding columns (a square submatrix); 257379bdfe76SSatish Balay each processor's off-diagonal portion encompasses the remainder of the 257479bdfe76SSatish Balay local matrix (a rectangular submatrix). 257579bdfe76SSatish Balay 257679bdfe76SSatish Balay The user can specify preallocated storage for the diagonal part of 257779bdfe76SSatish Balay the local submatrix with either d_nz or d_nnz (not both). Set 257879bdfe76SSatish Balay d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic 257979bdfe76SSatish Balay memory allocation. Likewise, specify preallocated storage for the 258079bdfe76SSatish Balay off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 258179bdfe76SSatish Balay 258279bdfe76SSatish Balay Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 258379bdfe76SSatish Balay the figure below we depict these three local rows and all columns (0-11). 258479bdfe76SSatish Balay 2585db81eaa0SLois Curfman McInnes .vb 2586db81eaa0SLois Curfman McInnes 0 1 2 3 4 5 6 7 8 9 10 11 2587db81eaa0SLois Curfman McInnes ------------------- 2588db81eaa0SLois Curfman McInnes row 3 | o o o d d d o o o o o o 2589db81eaa0SLois Curfman McInnes row 4 | o o o d d d o o o o o o 2590db81eaa0SLois Curfman McInnes row 5 | o o o d d d o o o o o o 2591db81eaa0SLois Curfman McInnes ------------------- 2592db81eaa0SLois Curfman McInnes .ve 259379bdfe76SSatish Balay 259479bdfe76SSatish Balay Thus, any entries in the d locations are stored in the d (diagonal) 259579bdfe76SSatish Balay submatrix, and any entries in the o locations are stored in the 259679bdfe76SSatish Balay o (off-diagonal) submatrix. Note that the d and the o submatrices are 259757b952d6SSatish Balay stored simply in the MATSEQBAIJ format for compressed row storage. 259879bdfe76SSatish Balay 2599d64ed03dSBarry Smith Now d_nz should indicate the number of block nonzeros per row in the d matrix, 2600d64ed03dSBarry Smith and o_nz should indicate the number of block nonzeros per row in the o matrix. 260179bdfe76SSatish Balay In general, for PDE problems in which most nonzeros are near the diagonal, 260292e8d321SLois Curfman McInnes one expects d_nz >> o_nz. For large problems you MUST preallocate memory 260392e8d321SLois Curfman McInnes or you will get TERRIBLE performance; see the users' manual chapter on 26046da5968aSLois Curfman McInnes matrices. 260579bdfe76SSatish Balay 2606027ccd11SLois Curfman McInnes Level: intermediate 2607027ccd11SLois Curfman McInnes 260892e8d321SLois Curfman McInnes .keywords: matrix, block, aij, compressed row, sparse, parallel 260979bdfe76SSatish Balay 2610aac34f13SBarry Smith .seealso: MatCreate(), MatCreateSeqBAIJ(), MatSetValues(), MatCreateMPIBAIJ(), MatMPIBAIJSetPreallocation(), MatMPIBAIJSetPreallocationCSR() 261179bdfe76SSatish Balay @*/ 2612b24ad042SBarry Smith PetscErrorCode MatCreateMPIBAIJ(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[],Mat *A) 261379bdfe76SSatish Balay { 26146849ba73SBarry Smith PetscErrorCode ierr; 2615b24ad042SBarry Smith PetscMPIInt size; 261679bdfe76SSatish Balay 2617d64ed03dSBarry Smith PetscFunctionBegin; 2618273d9f13SBarry Smith ierr = MatCreate(comm,m,n,M,N,A);CHKERRQ(ierr); 2619d132466eSBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 2620273d9f13SBarry Smith if (size > 1) { 2621273d9f13SBarry Smith ierr = MatSetType(*A,MATMPIBAIJ);CHKERRQ(ierr); 2622273d9f13SBarry Smith ierr = MatMPIBAIJSetPreallocation(*A,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr); 2623273d9f13SBarry Smith } else { 2624273d9f13SBarry Smith ierr = MatSetType(*A,MATSEQBAIJ);CHKERRQ(ierr); 2625273d9f13SBarry Smith ierr = MatSeqBAIJSetPreallocation(*A,bs,d_nz,d_nnz);CHKERRQ(ierr); 26263914022bSBarry Smith } 26273a40ed3dSBarry Smith PetscFunctionReturn(0); 262879bdfe76SSatish Balay } 2629026e39d0SSatish Balay 26304a2ae208SSatish Balay #undef __FUNCT__ 26314a2ae208SSatish Balay #define __FUNCT__ "MatDuplicate_MPIBAIJ" 26326849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIBAIJ(Mat matin,MatDuplicateOption cpvalues,Mat *newmat) 26330ac07820SSatish Balay { 26340ac07820SSatish Balay Mat mat; 26350ac07820SSatish Balay Mat_MPIBAIJ *a,*oldmat = (Mat_MPIBAIJ*)matin->data; 2636dfbe8321SBarry Smith PetscErrorCode ierr; 2637b24ad042SBarry Smith PetscInt len=0; 26380ac07820SSatish Balay 2639d64ed03dSBarry Smith PetscFunctionBegin; 26400ac07820SSatish Balay *newmat = 0; 2641273d9f13SBarry Smith ierr = MatCreate(matin->comm,matin->m,matin->n,matin->M,matin->N,&mat);CHKERRQ(ierr); 2642be5d1d56SKris Buschelman ierr = MatSetType(mat,matin->type_name);CHKERRQ(ierr); 26431d5dac46SHong Zhang ierr = PetscMemcpy(mat->ops,matin->ops,sizeof(struct _MatOps));CHKERRQ(ierr); 26447fff6886SHong Zhang 26454beb1cfeSHong Zhang mat->factor = matin->factor; 2646273d9f13SBarry Smith mat->preallocated = PETSC_TRUE; 26470ac07820SSatish Balay mat->assembled = PETSC_TRUE; 26487fff6886SHong Zhang mat->insertmode = NOT_SET_VALUES; 26497fff6886SHong Zhang 2650273d9f13SBarry Smith a = (Mat_MPIBAIJ*)mat->data; 2651521d7252SBarry Smith mat->bs = matin->bs; 26520ac07820SSatish Balay a->bs2 = oldmat->bs2; 26530ac07820SSatish Balay a->mbs = oldmat->mbs; 26540ac07820SSatish Balay a->nbs = oldmat->nbs; 26550ac07820SSatish Balay a->Mbs = oldmat->Mbs; 26560ac07820SSatish Balay a->Nbs = oldmat->Nbs; 26570ac07820SSatish Balay 26580ac07820SSatish Balay a->rstart = oldmat->rstart; 26590ac07820SSatish Balay a->rend = oldmat->rend; 26600ac07820SSatish Balay a->cstart = oldmat->cstart; 26610ac07820SSatish Balay a->cend = oldmat->cend; 26620ac07820SSatish Balay a->size = oldmat->size; 26630ac07820SSatish Balay a->rank = oldmat->rank; 2664aef5e8e0SSatish Balay a->donotstash = oldmat->donotstash; 2665aef5e8e0SSatish Balay a->roworiented = oldmat->roworiented; 2666aef5e8e0SSatish Balay a->rowindices = 0; 26670ac07820SSatish Balay a->rowvalues = 0; 26680ac07820SSatish Balay a->getrowactive = PETSC_FALSE; 266930793edcSSatish Balay a->barray = 0; 26703123a43fSSatish Balay a->rstart_bs = oldmat->rstart_bs; 26713123a43fSSatish Balay a->rend_bs = oldmat->rend_bs; 26723123a43fSSatish Balay a->cstart_bs = oldmat->cstart_bs; 26733123a43fSSatish Balay a->cend_bs = oldmat->cend_bs; 26740ac07820SSatish Balay 2675133cdb44SSatish Balay /* hash table stuff */ 2676133cdb44SSatish Balay a->ht = 0; 2677133cdb44SSatish Balay a->hd = 0; 2678133cdb44SSatish Balay a->ht_size = 0; 2679133cdb44SSatish Balay a->ht_flag = oldmat->ht_flag; 268025fdafccSSatish Balay a->ht_fact = oldmat->ht_fact; 2681133cdb44SSatish Balay a->ht_total_ct = 0; 2682133cdb44SSatish Balay a->ht_insert_ct = 0; 2683133cdb44SSatish Balay 2684b24ad042SBarry Smith ierr = PetscMemcpy(a->rowners,oldmat->rowners,3*(a->size+2)*sizeof(PetscInt));CHKERRQ(ierr); 26858798bf22SSatish Balay ierr = MatStashCreate_Private(matin->comm,1,&mat->stash);CHKERRQ(ierr); 2686521d7252SBarry Smith ierr = MatStashCreate_Private(matin->comm,matin->bs,&mat->bstash);CHKERRQ(ierr); 26870ac07820SSatish Balay if (oldmat->colmap) { 2688aa482453SBarry Smith #if defined (PETSC_USE_CTABLE) 26890f5bd95cSBarry Smith ierr = PetscTableCreateCopy(oldmat->colmap,&a->colmap);CHKERRQ(ierr); 269048e59246SSatish Balay #else 2691b24ad042SBarry Smith ierr = PetscMalloc((a->Nbs)*sizeof(PetscInt),&a->colmap);CHKERRQ(ierr); 269252e6d16bSBarry Smith ierr = PetscLogObjectMemory(mat,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr); 2693b24ad042SBarry Smith ierr = PetscMemcpy(a->colmap,oldmat->colmap,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr); 269448e59246SSatish Balay #endif 26950ac07820SSatish Balay } else a->colmap = 0; 26964beb1cfeSHong Zhang 26970ac07820SSatish Balay if (oldmat->garray && (len = ((Mat_SeqBAIJ*)(oldmat->B->data))->nbs)) { 2698b24ad042SBarry Smith ierr = PetscMalloc(len*sizeof(PetscInt),&a->garray);CHKERRQ(ierr); 269952e6d16bSBarry Smith ierr = PetscLogObjectMemory(mat,len*sizeof(PetscInt));CHKERRQ(ierr); 2700b24ad042SBarry Smith ierr = PetscMemcpy(a->garray,oldmat->garray,len*sizeof(PetscInt));CHKERRQ(ierr); 27010ac07820SSatish Balay } else a->garray = 0; 27020ac07820SSatish Balay 27030ac07820SSatish Balay ierr = VecDuplicate(oldmat->lvec,&a->lvec);CHKERRQ(ierr); 270452e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->lvec);CHKERRQ(ierr); 27050ac07820SSatish Balay ierr = VecScatterCopy(oldmat->Mvctx,&a->Mvctx);CHKERRQ(ierr); 270652e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->Mvctx);CHKERRQ(ierr); 27077fff6886SHong Zhang 27082e8a6d31SBarry Smith ierr = MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr); 270952e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->A);CHKERRQ(ierr); 27102e8a6d31SBarry Smith ierr = MatDuplicate(oldmat->B,cpvalues,&a->B);CHKERRQ(ierr); 271152e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->B);CHKERRQ(ierr); 2712b0a32e0cSBarry Smith ierr = PetscFListDuplicate(matin->qlist,&mat->qlist);CHKERRQ(ierr); 27130ac07820SSatish Balay *newmat = mat; 27144beb1cfeSHong Zhang 27153a40ed3dSBarry Smith PetscFunctionReturn(0); 27160ac07820SSatish Balay } 271757b952d6SSatish Balay 2718e090d566SSatish Balay #include "petscsys.h" 271957b952d6SSatish Balay 27204a2ae208SSatish Balay #undef __FUNCT__ 27214a2ae208SSatish Balay #define __FUNCT__ "MatLoad_MPIBAIJ" 2722dfbe8321SBarry Smith PetscErrorCode MatLoad_MPIBAIJ(PetscViewer viewer,const MatType type,Mat *newmat) 272357b952d6SSatish Balay { 272457b952d6SSatish Balay Mat A; 27256849ba73SBarry Smith PetscErrorCode ierr; 2726b24ad042SBarry Smith int fd; 2727b24ad042SBarry Smith PetscInt i,nz,j,rstart,rend; 272887828ca2SBarry Smith PetscScalar *vals,*buf; 272957b952d6SSatish Balay MPI_Comm comm = ((PetscObject)viewer)->comm; 273057b952d6SSatish Balay MPI_Status status; 2731b24ad042SBarry Smith PetscMPIInt rank,size,maxnz; 2732b24ad042SBarry Smith PetscInt header[4],*rowlengths = 0,M,N,m,*rowners,*cols; 2733dc231df0SBarry Smith PetscInt *locrowlens,*procsnz = 0,*browners; 2734167e7480SBarry Smith PetscInt jj,*mycols,*ibuf,bs=1,Mbs,mbs,extra_rows,mmax; 2735dc231df0SBarry Smith PetscMPIInt tag = ((PetscObject)viewer)->tag; 2736b24ad042SBarry Smith PetscInt *dlens,*odlens,*mask,*masked1,*masked2,rowcount,odcount; 2737dc231df0SBarry Smith PetscInt dcount,kmax,k,nzcount,tmp,mend; 273857b952d6SSatish Balay 2739d64ed03dSBarry Smith PetscFunctionBegin; 2740b0a32e0cSBarry Smith ierr = PetscOptionsGetInt(PETSC_NULL,"-matload_block_size",&bs,PETSC_NULL);CHKERRQ(ierr); 274157b952d6SSatish Balay 2742d132466eSBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 2743d132466eSBarry Smith ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 274457b952d6SSatish Balay if (!rank) { 2745b0a32e0cSBarry Smith ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr); 2746e5638eb3SBarry Smith ierr = PetscBinaryRead(fd,(char *)header,4,PETSC_INT);CHKERRQ(ierr); 2747552e946dSBarry Smith if (header[0] != MAT_FILE_COOKIE) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"not matrix object"); 27486c5fab8fSBarry Smith } 2749d64ed03dSBarry Smith 2750b24ad042SBarry Smith ierr = MPI_Bcast(header+1,3,MPIU_INT,0,comm);CHKERRQ(ierr); 275157b952d6SSatish Balay M = header[1]; N = header[2]; 275257b952d6SSatish Balay 275329bbc08cSBarry Smith if (M != N) SETERRQ(PETSC_ERR_SUP,"Can only do square matrices"); 275457b952d6SSatish Balay 275557b952d6SSatish Balay /* 275657b952d6SSatish Balay This code adds extra rows to make sure the number of rows is 275757b952d6SSatish Balay divisible by the blocksize 275857b952d6SSatish Balay */ 275957b952d6SSatish Balay Mbs = M/bs; 2760dc231df0SBarry Smith extra_rows = bs - M + bs*Mbs; 276157b952d6SSatish Balay if (extra_rows == bs) extra_rows = 0; 276257b952d6SSatish Balay else Mbs++; 276357b952d6SSatish Balay if (extra_rows && !rank) { 276463ba0a88SBarry Smith ierr = PetscLogInfo((0,"MatLoad_MPIBAIJ:Padding loaded matrix to match blocksize\n"));CHKERRQ(ierr); 276557b952d6SSatish Balay } 2766537820f0SBarry Smith 276757b952d6SSatish Balay /* determine ownership of all rows */ 276857b952d6SSatish Balay mbs = Mbs/size + ((Mbs % size) > rank); 276957b952d6SSatish Balay m = mbs*bs; 2770dc231df0SBarry Smith ierr = PetscMalloc2(size+1,PetscInt,&rowners,size+1,PetscInt,&browners);CHKERRQ(ierr); 2771b24ad042SBarry Smith ierr = MPI_Allgather(&mbs,1,MPIU_INT,rowners+1,1,MPIU_INT,comm);CHKERRQ(ierr); 2772167e7480SBarry Smith 2773167e7480SBarry Smith /* process 0 needs enough room for process with most rows */ 2774167e7480SBarry Smith if (!rank) { 2775167e7480SBarry Smith mmax = rowners[1]; 2776167e7480SBarry Smith for (i=2; i<size; i++) { 2777167e7480SBarry Smith mmax = PetscMax(mmax,rowners[i]); 2778167e7480SBarry Smith } 2779ca02efcfSSatish Balay mmax*=bs; 2780167e7480SBarry Smith } else mmax = m; 2781167e7480SBarry Smith 278257b952d6SSatish Balay rowners[0] = 0; 2783cee3aa6bSSatish Balay for (i=2; i<=size; i++) rowners[i] += rowners[i-1]; 2784cee3aa6bSSatish Balay for (i=0; i<=size; i++) browners[i] = rowners[i]*bs; 278557b952d6SSatish Balay rstart = rowners[rank]; 278657b952d6SSatish Balay rend = rowners[rank+1]; 278757b952d6SSatish Balay 278857b952d6SSatish Balay /* distribute row lengths to all processors */ 278919c38ff2SBarry Smith ierr = PetscMalloc((mmax+1)*sizeof(PetscInt),&locrowlens);CHKERRQ(ierr); 279057b952d6SSatish Balay if (!rank) { 2791dc231df0SBarry Smith mend = m; 2792dc231df0SBarry Smith if (size == 1) mend = mend - extra_rows; 2793dc231df0SBarry Smith ierr = PetscBinaryRead(fd,locrowlens,mend,PETSC_INT);CHKERRQ(ierr); 2794dc231df0SBarry Smith for (j=mend; j<m; j++) locrowlens[j] = 1; 2795dc231df0SBarry Smith ierr = PetscMalloc(m*sizeof(PetscInt),&rowlengths);CHKERRQ(ierr); 2796b24ad042SBarry Smith ierr = PetscMalloc(size*sizeof(PetscInt),&procsnz);CHKERRQ(ierr); 2797b24ad042SBarry Smith ierr = PetscMemzero(procsnz,size*sizeof(PetscInt));CHKERRQ(ierr); 2798dc231df0SBarry Smith for (j=0; j<m; j++) { 2799dc231df0SBarry Smith procsnz[0] += locrowlens[j]; 2800dc231df0SBarry Smith } 2801dc231df0SBarry Smith for (i=1; i<size; i++) { 2802dc231df0SBarry Smith mend = browners[i+1] - browners[i]; 2803dc231df0SBarry Smith if (i == size-1) mend = mend - extra_rows; 2804dc231df0SBarry Smith ierr = PetscBinaryRead(fd,rowlengths,mend,PETSC_INT);CHKERRQ(ierr); 2805dc231df0SBarry Smith for (j=mend; j<browners[i+1] - browners[i]; j++) rowlengths[j] = 1; 2806dc231df0SBarry Smith /* calculate the number of nonzeros on each processor */ 2807dc231df0SBarry Smith for (j=0; j<browners[i+1]-browners[i]; j++) { 280857b952d6SSatish Balay procsnz[i] += rowlengths[j]; 280957b952d6SSatish Balay } 2810dc231df0SBarry Smith ierr = MPI_Send(rowlengths,browners[i+1]-browners[i],MPIU_INT,i,tag,comm);CHKERRQ(ierr); 281157b952d6SSatish Balay } 2812606d414cSSatish Balay ierr = PetscFree(rowlengths);CHKERRQ(ierr); 2813dc231df0SBarry Smith } else { 2814dc231df0SBarry Smith ierr = MPI_Recv(locrowlens,m,MPIU_INT,0,tag,comm,&status);CHKERRQ(ierr); 2815dc231df0SBarry Smith } 281657b952d6SSatish Balay 2817dc231df0SBarry Smith if (!rank) { 281857b952d6SSatish Balay /* determine max buffer needed and allocate it */ 28198a8e0b3aSBarry Smith maxnz = procsnz[0]; 2820cdc0ba36SBarry Smith for (i=1; i<size; i++) { 282157b952d6SSatish Balay maxnz = PetscMax(maxnz,procsnz[i]); 282257b952d6SSatish Balay } 2823b24ad042SBarry Smith ierr = PetscMalloc(maxnz*sizeof(PetscInt),&cols);CHKERRQ(ierr); 282457b952d6SSatish Balay 282557b952d6SSatish Balay /* read in my part of the matrix column indices */ 282657b952d6SSatish Balay nz = procsnz[0]; 282719c38ff2SBarry Smith ierr = PetscMalloc((nz+1)*sizeof(PetscInt),&ibuf);CHKERRQ(ierr); 282857b952d6SSatish Balay mycols = ibuf; 2829cee3aa6bSSatish Balay if (size == 1) nz -= extra_rows; 2830e5638eb3SBarry Smith ierr = PetscBinaryRead(fd,mycols,nz,PETSC_INT);CHKERRQ(ierr); 2831cee3aa6bSSatish Balay if (size == 1) for (i=0; i< extra_rows; i++) { mycols[nz+i] = M+i; } 2832cee3aa6bSSatish Balay 283357b952d6SSatish Balay /* read in every ones (except the last) and ship off */ 283457b952d6SSatish Balay for (i=1; i<size-1; i++) { 283557b952d6SSatish Balay nz = procsnz[i]; 2836e5638eb3SBarry Smith ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr); 2837b24ad042SBarry Smith ierr = MPI_Send(cols,nz,MPIU_INT,i,tag,comm);CHKERRQ(ierr); 283857b952d6SSatish Balay } 283957b952d6SSatish Balay /* read in the stuff for the last proc */ 284057b952d6SSatish Balay if (size != 1) { 284157b952d6SSatish Balay nz = procsnz[size-1] - extra_rows; /* the extra rows are not on the disk */ 2842e5638eb3SBarry Smith ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr); 284357b952d6SSatish Balay for (i=0; i<extra_rows; i++) cols[nz+i] = M+i; 2844b24ad042SBarry Smith ierr = MPI_Send(cols,nz+extra_rows,MPIU_INT,size-1,tag,comm);CHKERRQ(ierr); 284557b952d6SSatish Balay } 2846606d414cSSatish Balay ierr = PetscFree(cols);CHKERRQ(ierr); 2847d64ed03dSBarry Smith } else { 284857b952d6SSatish Balay /* determine buffer space needed for message */ 284957b952d6SSatish Balay nz = 0; 285057b952d6SSatish Balay for (i=0; i<m; i++) { 285157b952d6SSatish Balay nz += locrowlens[i]; 285257b952d6SSatish Balay } 285319c38ff2SBarry Smith ierr = PetscMalloc((nz+1)*sizeof(PetscInt),&ibuf);CHKERRQ(ierr); 285457b952d6SSatish Balay mycols = ibuf; 285557b952d6SSatish Balay /* receive message of column indices*/ 2856b24ad042SBarry Smith ierr = MPI_Recv(mycols,nz,MPIU_INT,0,tag,comm,&status);CHKERRQ(ierr); 2857b24ad042SBarry Smith ierr = MPI_Get_count(&status,MPIU_INT,&maxnz);CHKERRQ(ierr); 285829bbc08cSBarry Smith if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 285957b952d6SSatish Balay } 286057b952d6SSatish Balay 286157b952d6SSatish Balay /* loop over local rows, determining number of off diagonal entries */ 2862dc231df0SBarry Smith ierr = PetscMalloc2(rend-rstart,PetscInt,&dlens,rend-rstart,PetscInt,&odlens);CHKERRQ(ierr); 2863dc231df0SBarry Smith ierr = PetscMalloc3(Mbs,PetscInt,&mask,Mbs,PetscInt,&masked1,Mbs,PetscInt,&masked2);CHKERRQ(ierr); 2864dc231df0SBarry Smith ierr = PetscMemzero(mask,Mbs*sizeof(PetscInt));CHKERRQ(ierr); 2865dc231df0SBarry Smith ierr = PetscMemzero(masked1,Mbs*sizeof(PetscInt));CHKERRQ(ierr); 2866dc231df0SBarry Smith ierr = PetscMemzero(masked2,Mbs*sizeof(PetscInt));CHKERRQ(ierr); 286757b952d6SSatish Balay rowcount = 0; nzcount = 0; 286857b952d6SSatish Balay for (i=0; i<mbs; i++) { 286957b952d6SSatish Balay dcount = 0; 287057b952d6SSatish Balay odcount = 0; 287157b952d6SSatish Balay for (j=0; j<bs; j++) { 287257b952d6SSatish Balay kmax = locrowlens[rowcount]; 287357b952d6SSatish Balay for (k=0; k<kmax; k++) { 287457b952d6SSatish Balay tmp = mycols[nzcount++]/bs; 287557b952d6SSatish Balay if (!mask[tmp]) { 287657b952d6SSatish Balay mask[tmp] = 1; 287757b952d6SSatish Balay if (tmp < rstart || tmp >= rend) masked2[odcount++] = tmp; 287857b952d6SSatish Balay else masked1[dcount++] = tmp; 287957b952d6SSatish Balay } 288057b952d6SSatish Balay } 288157b952d6SSatish Balay rowcount++; 288257b952d6SSatish Balay } 2883cee3aa6bSSatish Balay 288457b952d6SSatish Balay dlens[i] = dcount; 288557b952d6SSatish Balay odlens[i] = odcount; 2886cee3aa6bSSatish Balay 288757b952d6SSatish Balay /* zero out the mask elements we set */ 288857b952d6SSatish Balay for (j=0; j<dcount; j++) mask[masked1[j]] = 0; 288957b952d6SSatish Balay for (j=0; j<odcount; j++) mask[masked2[j]] = 0; 289057b952d6SSatish Balay } 2891cee3aa6bSSatish Balay 289257b952d6SSatish Balay /* create our matrix */ 289378ae41b4SKris Buschelman ierr = MatCreate(comm,m,m,M+extra_rows,N+extra_rows,&A);CHKERRQ(ierr); 289478ae41b4SKris Buschelman ierr = MatSetType(A,type);CHKERRQ(ierr) 289578ae41b4SKris Buschelman ierr = MatMPIBAIJSetPreallocation(A,bs,0,dlens,0,odlens);CHKERRQ(ierr); 289678ae41b4SKris Buschelman 289778ae41b4SKris Buschelman /* Why doesn't this called using ierr = MatSetOption(A,MAT_COLUMNS_SORTED);CHKERRQ(ierr); */ 2898dc231df0SBarry Smith ierr = MatSetOption(A,MAT_COLUMNS_SORTED);CHKERRQ(ierr); 289957b952d6SSatish Balay 290057b952d6SSatish Balay if (!rank) { 290119c38ff2SBarry Smith ierr = PetscMalloc((maxnz+1)*sizeof(PetscScalar),&buf);CHKERRQ(ierr); 290257b952d6SSatish Balay /* read in my part of the matrix numerical values */ 290357b952d6SSatish Balay nz = procsnz[0]; 290457b952d6SSatish Balay vals = buf; 2905cee3aa6bSSatish Balay mycols = ibuf; 2906cee3aa6bSSatish Balay if (size == 1) nz -= extra_rows; 2907e5638eb3SBarry Smith ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 2908cee3aa6bSSatish Balay if (size == 1) for (i=0; i< extra_rows; i++) { vals[nz+i] = 1.0; } 2909537820f0SBarry Smith 291057b952d6SSatish Balay /* insert into matrix */ 291157b952d6SSatish Balay jj = rstart*bs; 291257b952d6SSatish Balay for (i=0; i<m; i++) { 2913dc231df0SBarry Smith ierr = MatSetValues_MPIBAIJ(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr); 291457b952d6SSatish Balay mycols += locrowlens[i]; 291557b952d6SSatish Balay vals += locrowlens[i]; 291657b952d6SSatish Balay jj++; 291757b952d6SSatish Balay } 291857b952d6SSatish Balay /* read in other processors (except the last one) and ship out */ 291957b952d6SSatish Balay for (i=1; i<size-1; i++) { 292057b952d6SSatish Balay nz = procsnz[i]; 292157b952d6SSatish Balay vals = buf; 2922e5638eb3SBarry Smith ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 2923ca161407SBarry Smith ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,A->tag,comm);CHKERRQ(ierr); 292457b952d6SSatish Balay } 292557b952d6SSatish Balay /* the last proc */ 292657b952d6SSatish Balay if (size != 1){ 292757b952d6SSatish Balay nz = procsnz[i] - extra_rows; 2928cee3aa6bSSatish Balay vals = buf; 2929e5638eb3SBarry Smith ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 293057b952d6SSatish Balay for (i=0; i<extra_rows; i++) vals[nz+i] = 1.0; 2931ca161407SBarry Smith ierr = MPI_Send(vals,nz+extra_rows,MPIU_SCALAR,size-1,A->tag,comm);CHKERRQ(ierr); 293257b952d6SSatish Balay } 2933606d414cSSatish Balay ierr = PetscFree(procsnz);CHKERRQ(ierr); 2934d64ed03dSBarry Smith } else { 293557b952d6SSatish Balay /* receive numeric values */ 293619c38ff2SBarry Smith ierr = PetscMalloc((nz+1)*sizeof(PetscScalar),&buf);CHKERRQ(ierr); 293757b952d6SSatish Balay 293857b952d6SSatish Balay /* receive message of values*/ 293957b952d6SSatish Balay vals = buf; 2940cee3aa6bSSatish Balay mycols = ibuf; 2941ca161407SBarry Smith ierr = MPI_Recv(vals,nz,MPIU_SCALAR,0,A->tag,comm,&status);CHKERRQ(ierr); 2942ca161407SBarry Smith ierr = MPI_Get_count(&status,MPIU_SCALAR,&maxnz);CHKERRQ(ierr); 294329bbc08cSBarry Smith if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 294457b952d6SSatish Balay 294557b952d6SSatish Balay /* insert into matrix */ 294657b952d6SSatish Balay jj = rstart*bs; 2947cee3aa6bSSatish Balay for (i=0; i<m; i++) { 2948dc231df0SBarry Smith ierr = MatSetValues_MPIBAIJ(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr); 294957b952d6SSatish Balay mycols += locrowlens[i]; 295057b952d6SSatish Balay vals += locrowlens[i]; 295157b952d6SSatish Balay jj++; 295257b952d6SSatish Balay } 295357b952d6SSatish Balay } 2954606d414cSSatish Balay ierr = PetscFree(locrowlens);CHKERRQ(ierr); 2955606d414cSSatish Balay ierr = PetscFree(buf);CHKERRQ(ierr); 2956606d414cSSatish Balay ierr = PetscFree(ibuf);CHKERRQ(ierr); 2957dc231df0SBarry Smith ierr = PetscFree2(rowners,browners);CHKERRQ(ierr); 2958dc231df0SBarry Smith ierr = PetscFree2(dlens,odlens);CHKERRQ(ierr); 2959dc231df0SBarry Smith ierr = PetscFree3(mask,masked1,masked2);CHKERRQ(ierr); 29606d4a8577SBarry Smith ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 29616d4a8577SBarry Smith ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 296278ae41b4SKris Buschelman 296378ae41b4SKris Buschelman *newmat = A; 29643a40ed3dSBarry Smith PetscFunctionReturn(0); 296557b952d6SSatish Balay } 296657b952d6SSatish Balay 29674a2ae208SSatish Balay #undef __FUNCT__ 29684a2ae208SSatish Balay #define __FUNCT__ "MatMPIBAIJSetHashTableFactor" 2969133cdb44SSatish Balay /*@ 2970133cdb44SSatish Balay MatMPIBAIJSetHashTableFactor - Sets the factor required to compute the size of the HashTable. 2971133cdb44SSatish Balay 2972133cdb44SSatish Balay Input Parameters: 2973133cdb44SSatish Balay . mat - the matrix 2974133cdb44SSatish Balay . fact - factor 2975133cdb44SSatish Balay 2976fee21e36SBarry Smith Collective on Mat 2977fee21e36SBarry Smith 29788c890885SBarry Smith Level: advanced 29798c890885SBarry Smith 2980133cdb44SSatish Balay Notes: 2981133cdb44SSatish Balay This can also be set by the command line option: -mat_use_hash_table fact 2982133cdb44SSatish Balay 2983133cdb44SSatish Balay .keywords: matrix, hashtable, factor, HT 2984133cdb44SSatish Balay 2985133cdb44SSatish Balay .seealso: MatSetOption() 2986133cdb44SSatish Balay @*/ 2987dfbe8321SBarry Smith PetscErrorCode MatMPIBAIJSetHashTableFactor(Mat mat,PetscReal fact) 2988133cdb44SSatish Balay { 2989dfbe8321SBarry Smith PetscErrorCode ierr,(*f)(Mat,PetscReal); 29905bf65638SKris Buschelman 29915bf65638SKris Buschelman PetscFunctionBegin; 29925bf65638SKris Buschelman ierr = PetscObjectQueryFunction((PetscObject)mat,"MatSetHashTableFactor_C",(void (**)(void))&f);CHKERRQ(ierr); 29935bf65638SKris Buschelman if (f) { 29945bf65638SKris Buschelman ierr = (*f)(mat,fact);CHKERRQ(ierr); 29955bf65638SKris Buschelman } 29965bf65638SKris Buschelman PetscFunctionReturn(0); 29975bf65638SKris Buschelman } 29985bf65638SKris Buschelman 29995bf65638SKris Buschelman #undef __FUNCT__ 30005bf65638SKris Buschelman #define __FUNCT__ "MatSetHashTableFactor_MPIBAIJ" 3001dfbe8321SBarry Smith PetscErrorCode MatSetHashTableFactor_MPIBAIJ(Mat mat,PetscReal fact) 30025bf65638SKris Buschelman { 300325fdafccSSatish Balay Mat_MPIBAIJ *baij; 3004133cdb44SSatish Balay 3005133cdb44SSatish Balay PetscFunctionBegin; 3006133cdb44SSatish Balay baij = (Mat_MPIBAIJ*)mat->data; 3007133cdb44SSatish Balay baij->ht_fact = fact; 3008133cdb44SSatish Balay PetscFunctionReturn(0); 3009133cdb44SSatish Balay } 3010f2a5309cSSatish Balay 30114a2ae208SSatish Balay #undef __FUNCT__ 30124a2ae208SSatish Balay #define __FUNCT__ "MatMPIBAIJGetSeqBAIJ" 3013b24ad042SBarry Smith PetscErrorCode MatMPIBAIJGetSeqBAIJ(Mat A,Mat *Ad,Mat *Ao,PetscInt *colmap[]) 3014f2a5309cSSatish Balay { 3015f2a5309cSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 3016f2a5309cSSatish Balay PetscFunctionBegin; 3017f2a5309cSSatish Balay *Ad = a->A; 3018f2a5309cSSatish Balay *Ao = a->B; 3019195d93cdSBarry Smith *colmap = a->garray; 3020f2a5309cSSatish Balay PetscFunctionReturn(0); 3021f2a5309cSSatish Balay } 3022