xref: /petsc/src/mat/impls/baij/mpi/mpibaij.c (revision 5f9db2b25dbeb4dbaf539bdb264ccb4c01c47bc2)
1c6db04a5SJed Brown #include <../src/mat/impls/baij/mpi/mpibaij.h>   /*I  "petscmat.h"  I*/
2c5d9258eSSatish Balay 
3b51a4376SLisandro Dalcin #include <petsc/private/hashseti.h>
4c6db04a5SJed Brown #include <petscblaslapack.h>
565a92638SMatthew G. Knepley #include <petscsf.h>
679bdfe76SSatish Balay 
77ea3e4caSstefano_zampini #if defined(PETSC_HAVE_HYPRE)
87ea3e4caSstefano_zampini PETSC_INTERN PetscErrorCode MatConvert_AIJ_HYPRE(Mat,MatType,MatReuse,Mat*);
97ea3e4caSstefano_zampini #endif
107ea3e4caSstefano_zampini 
11985db425SBarry Smith PetscErrorCode MatGetRowMaxAbs_MPIBAIJ(Mat A,Vec v,PetscInt idx[])
127843d17aSBarry Smith {
137843d17aSBarry Smith   Mat_MPIBAIJ       *a = (Mat_MPIBAIJ*)A->data;
144e879edeSHong Zhang   PetscInt          i,*idxb = NULL,m = A->rmap->n,bs = A->cmap->bs;
154e879edeSHong Zhang   PetscScalar       *va,*vv;
164e879edeSHong Zhang   Vec               vB,vA;
174e879edeSHong Zhang   const PetscScalar *vb;
187843d17aSBarry Smith 
197843d17aSBarry Smith   PetscFunctionBegin;
209566063dSJacob Faibussowitsch   PetscCall(VecCreateSeq(PETSC_COMM_SELF,m,&vA));
219566063dSJacob Faibussowitsch   PetscCall(MatGetRowMaxAbs(a->A,vA,idx));
224e879edeSHong Zhang 
239566063dSJacob Faibussowitsch   PetscCall(VecGetArrayWrite(vA,&va));
24985db425SBarry Smith   if (idx) {
254e879edeSHong Zhang     for (i=0; i<m; i++) {
2626fbe8dcSKarl Rupp       if (PetscAbsScalar(va[i])) idx[i] += A->cmap->rstart;
2726fbe8dcSKarl Rupp     }
28985db425SBarry Smith   }
297843d17aSBarry Smith 
309566063dSJacob Faibussowitsch   PetscCall(VecCreateSeq(PETSC_COMM_SELF,m,&vB));
319566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(m,&idxb));
329566063dSJacob Faibussowitsch   PetscCall(MatGetRowMaxAbs(a->B,vB,idxb));
337843d17aSBarry Smith 
349566063dSJacob Faibussowitsch   PetscCall(VecGetArrayWrite(v,&vv));
359566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(vB,&vb));
364e879edeSHong Zhang   for (i=0; i<m; i++) {
3726fbe8dcSKarl Rupp     if (PetscAbsScalar(va[i]) < PetscAbsScalar(vb[i])) {
384e879edeSHong Zhang       vv[i] = vb[i];
394e879edeSHong Zhang       if (idx) idx[i] = bs*a->garray[idxb[i]/bs] + (idxb[i] % bs);
404e879edeSHong Zhang     } else {
414e879edeSHong Zhang       vv[i] = va[i];
4243359b5eSHong Zhang       if (idx && PetscAbsScalar(va[i]) == PetscAbsScalar(vb[i]) && idxb[i] != -1 && idx[i] > bs*a->garray[idxb[i]/bs] + (idxb[i] % bs))
434e879edeSHong Zhang         idx[i] = bs*a->garray[idxb[i]/bs] + (idxb[i] % bs);
4426fbe8dcSKarl Rupp     }
457843d17aSBarry Smith   }
469566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayWrite(vA,&vv));
479566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayWrite(vA,&va));
489566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(vB,&vb));
499566063dSJacob Faibussowitsch   PetscCall(PetscFree(idxb));
509566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&vA));
519566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&vB));
527843d17aSBarry Smith   PetscFunctionReturn(0);
537843d17aSBarry Smith }
547843d17aSBarry Smith 
557087cfbeSBarry Smith PetscErrorCode  MatStoreValues_MPIBAIJ(Mat mat)
567fc3c18eSBarry Smith {
577fc3c18eSBarry Smith   Mat_MPIBAIJ    *aij = (Mat_MPIBAIJ*)mat->data;
587fc3c18eSBarry Smith 
597fc3c18eSBarry Smith   PetscFunctionBegin;
609566063dSJacob Faibussowitsch   PetscCall(MatStoreValues(aij->A));
619566063dSJacob Faibussowitsch   PetscCall(MatStoreValues(aij->B));
627fc3c18eSBarry Smith   PetscFunctionReturn(0);
637fc3c18eSBarry Smith }
647fc3c18eSBarry Smith 
657087cfbeSBarry Smith PetscErrorCode  MatRetrieveValues_MPIBAIJ(Mat mat)
667fc3c18eSBarry Smith {
677fc3c18eSBarry Smith   Mat_MPIBAIJ    *aij = (Mat_MPIBAIJ*)mat->data;
687fc3c18eSBarry Smith 
697fc3c18eSBarry Smith   PetscFunctionBegin;
709566063dSJacob Faibussowitsch   PetscCall(MatRetrieveValues(aij->A));
719566063dSJacob Faibussowitsch   PetscCall(MatRetrieveValues(aij->B));
727fc3c18eSBarry Smith   PetscFunctionReturn(0);
737fc3c18eSBarry Smith }
747fc3c18eSBarry Smith 
75537820f0SBarry Smith /*
76537820f0SBarry Smith      Local utility routine that creates a mapping from the global column
7757b952d6SSatish Balay    number to the local number in the off-diagonal part of the local
78e06f6af7SJed Brown    storage of the matrix.  This is done in a non scalable way since the
7957b952d6SSatish Balay    length of colmap equals the global matrix length.
8057b952d6SSatish Balay */
81ab9863d7SBarry Smith PetscErrorCode MatCreateColmap_MPIBAIJ_Private(Mat mat)
8257b952d6SSatish Balay {
8357b952d6SSatish Balay   Mat_MPIBAIJ    *baij = (Mat_MPIBAIJ*)mat->data;
8457b952d6SSatish Balay   Mat_SeqBAIJ    *B    = (Mat_SeqBAIJ*)baij->B->data;
85d0f46423SBarry Smith   PetscInt       nbs = B->nbs,i,bs=mat->rmap->bs;
8657b952d6SSatish Balay 
87d64ed03dSBarry Smith   PetscFunctionBegin;
88aa482453SBarry Smith #if defined(PETSC_USE_CTABLE)
899566063dSJacob Faibussowitsch   PetscCall(PetscTableCreate(baij->nbs,baij->Nbs+1,&baij->colmap));
9048e59246SSatish Balay   for (i=0; i<nbs; i++) {
919566063dSJacob Faibussowitsch     PetscCall(PetscTableAdd(baij->colmap,baij->garray[i]+1,i*bs+1,INSERT_VALUES));
9248e59246SSatish Balay   }
9348e59246SSatish Balay #else
949566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(baij->Nbs+1,&baij->colmap));
959566063dSJacob Faibussowitsch   PetscCall(PetscLogObjectMemory((PetscObject)mat,baij->Nbs*sizeof(PetscInt)));
96928fc39bSSatish Balay   for (i=0; i<nbs; i++) baij->colmap[baij->garray[i]] = i*bs+1;
9748e59246SSatish Balay #endif
983a40ed3dSBarry Smith   PetscFunctionReturn(0);
9957b952d6SSatish Balay }
10057b952d6SSatish Balay 
101d40312a9SBarry Smith #define  MatSetValues_SeqBAIJ_A_Private(row,col,value,addv,orow,ocol)       \
10280c1aa95SSatish Balay   { \
10380c1aa95SSatish Balay     brow = row/bs;  \
10480c1aa95SSatish Balay     rp   = aj + ai[brow]; ap = aa + bs2*ai[brow]; \
105ac7a638eSSatish Balay     rmax = aimax[brow]; nrow = ailen[brow]; \
10680c1aa95SSatish Balay     bcol = col/bs; \
10780c1aa95SSatish Balay     ridx = row % bs; cidx = col % bs; \
108ab26458aSBarry Smith     low  = 0; high = nrow; \
109ab26458aSBarry Smith     while (high-low > 3) { \
110ab26458aSBarry Smith       t = (low+high)/2; \
111ab26458aSBarry Smith       if (rp[t] > bcol) high = t; \
112ab26458aSBarry Smith       else              low  = t; \
113ab26458aSBarry Smith     } \
114ab26458aSBarry Smith     for (_i=low; _i<high; _i++) { \
11580c1aa95SSatish Balay       if (rp[_i] > bcol) break; \
11680c1aa95SSatish Balay       if (rp[_i] == bcol) { \
11780c1aa95SSatish Balay         bap = ap +  bs2*_i + bs*cidx + ridx; \
118eada6651SSatish Balay         if (addv == ADD_VALUES) *bap += value;  \
119eada6651SSatish Balay         else                    *bap  = value;  \
120ac7a638eSSatish Balay         goto a_noinsert; \
12180c1aa95SSatish Balay       } \
12280c1aa95SSatish Balay     } \
12389280ab3SLois Curfman McInnes     if (a->nonew == 1) goto a_noinsert; \
1245f80ce2aSJacob Faibussowitsch     PetscCheck(a->nonew != -1,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", orow, ocol); \
125fef13f97SBarry Smith     MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,brow,bcol,rmax,aa,ai,aj,rp,ap,aimax,a->nonew,MatScalar); \
12680c1aa95SSatish Balay     N = nrow++ - 1;  \
12780c1aa95SSatish Balay     /* shift up all the later entries in this row */ \
1289566063dSJacob Faibussowitsch     PetscCall(PetscArraymove(rp+_i+1,rp+_i,N-_i+1));\
1299566063dSJacob Faibussowitsch     PetscCall(PetscArraymove(ap+bs2*(_i+1),ap+bs2*_i,bs2*(N-_i+1))); \
1309566063dSJacob Faibussowitsch     PetscCall(PetscArrayzero(ap+bs2*_i,bs2));  \
13180c1aa95SSatish Balay     rp[_i]                      = bcol;  \
13280c1aa95SSatish Balay     ap[bs2*_i + bs*cidx + ridx] = value;  \
133ac7a638eSSatish Balay a_noinsert:; \
13480c1aa95SSatish Balay     ailen[brow] = nrow; \
13580c1aa95SSatish Balay   }
13657b952d6SSatish Balay 
137d40312a9SBarry Smith #define  MatSetValues_SeqBAIJ_B_Private(row,col,value,addv,orow,ocol)       \
138ac7a638eSSatish Balay   { \
139ac7a638eSSatish Balay     brow = row/bs;  \
140ac7a638eSSatish Balay     rp   = bj + bi[brow]; ap = ba + bs2*bi[brow]; \
141ac7a638eSSatish Balay     rmax = bimax[brow]; nrow = bilen[brow]; \
142ac7a638eSSatish Balay     bcol = col/bs; \
143ac7a638eSSatish Balay     ridx = row % bs; cidx = col % bs; \
144ac7a638eSSatish Balay     low  = 0; high = nrow; \
145ac7a638eSSatish Balay     while (high-low > 3) { \
146ac7a638eSSatish Balay       t = (low+high)/2; \
147ac7a638eSSatish Balay       if (rp[t] > bcol) high = t; \
148ac7a638eSSatish Balay       else              low  = t; \
149ac7a638eSSatish Balay     } \
150ac7a638eSSatish Balay     for (_i=low; _i<high; _i++) { \
151ac7a638eSSatish Balay       if (rp[_i] > bcol) break; \
152ac7a638eSSatish Balay       if (rp[_i] == bcol) { \
153ac7a638eSSatish Balay         bap = ap +  bs2*_i + bs*cidx + ridx; \
154ac7a638eSSatish Balay         if (addv == ADD_VALUES) *bap += value;  \
155ac7a638eSSatish Balay         else                    *bap  = value;  \
156ac7a638eSSatish Balay         goto b_noinsert; \
157ac7a638eSSatish Balay       } \
158ac7a638eSSatish Balay     } \
15989280ab3SLois Curfman McInnes     if (b->nonew == 1) goto b_noinsert; \
1605f80ce2aSJacob Faibussowitsch     PetscCheck(b->nonew != -1,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero at global row/column  (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", orow, ocol); \
161fef13f97SBarry Smith     MatSeqXAIJReallocateAIJ(B,b->mbs,bs2,nrow,brow,bcol,rmax,ba,bi,bj,rp,ap,bimax,b->nonew,MatScalar); \
162ac7a638eSSatish Balay     N = nrow++ - 1;  \
163ac7a638eSSatish Balay     /* shift up all the later entries in this row */ \
1649566063dSJacob Faibussowitsch     PetscCall(PetscArraymove(rp+_i+1,rp+_i,N-_i+1));\
1659566063dSJacob Faibussowitsch     PetscCall(PetscArraymove(ap+bs2*(_i+1),ap+bs2*_i,bs2*(N-_i+1)));\
1669566063dSJacob Faibussowitsch     PetscCall(PetscArrayzero(ap+bs2*_i,bs2));  \
167ac7a638eSSatish Balay     rp[_i]                      = bcol;  \
168ac7a638eSSatish Balay     ap[bs2*_i + bs*cidx + ridx] = value;  \
169ac7a638eSSatish Balay b_noinsert:; \
170ac7a638eSSatish Balay     bilen[brow] = nrow; \
171ac7a638eSSatish Balay   }
172ac7a638eSSatish Balay 
173b24ad042SBarry Smith PetscErrorCode MatSetValues_MPIBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv)
17457b952d6SSatish Balay {
17557b952d6SSatish Balay   Mat_MPIBAIJ    *baij = (Mat_MPIBAIJ*)mat->data;
17693fea6afSBarry Smith   MatScalar      value;
177ace3abfcSBarry Smith   PetscBool      roworiented = baij->roworiented;
178b24ad042SBarry Smith   PetscInt       i,j,row,col;
179d0f46423SBarry Smith   PetscInt       rstart_orig=mat->rmap->rstart;
180d0f46423SBarry Smith   PetscInt       rend_orig  =mat->rmap->rend,cstart_orig=mat->cmap->rstart;
181d0f46423SBarry Smith   PetscInt       cend_orig  =mat->cmap->rend,bs=mat->rmap->bs;
18257b952d6SSatish Balay 
183eada6651SSatish Balay   /* Some Variables required in the macro */
18480c1aa95SSatish Balay   Mat         A     = baij->A;
18580c1aa95SSatish Balay   Mat_SeqBAIJ *a    = (Mat_SeqBAIJ*)(A)->data;
186b24ad042SBarry Smith   PetscInt    *aimax=a->imax,*ai=a->i,*ailen=a->ilen,*aj=a->j;
1873eda8832SBarry Smith   MatScalar   *aa   =a->a;
188ac7a638eSSatish Balay 
189ac7a638eSSatish Balay   Mat         B     = baij->B;
190ac7a638eSSatish Balay   Mat_SeqBAIJ *b    = (Mat_SeqBAIJ*)(B)->data;
191b24ad042SBarry Smith   PetscInt    *bimax=b->imax,*bi=b->i,*bilen=b->ilen,*bj=b->j;
1923eda8832SBarry Smith   MatScalar   *ba   =b->a;
193ac7a638eSSatish Balay 
194b24ad042SBarry Smith   PetscInt  *rp,ii,nrow,_i,rmax,N,brow,bcol;
195b24ad042SBarry Smith   PetscInt  low,high,t,ridx,cidx,bs2=a->bs2;
1963eda8832SBarry Smith   MatScalar *ap,*bap;
19780c1aa95SSatish Balay 
198d64ed03dSBarry Smith   PetscFunctionBegin;
19957b952d6SSatish Balay   for (i=0; i<m; i++) {
2005ef9f2a5SBarry Smith     if (im[i] < 0) continue;
2015f80ce2aSJacob Faibussowitsch     PetscCheck(im[i] < mat->rmap->N,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT,im[i],mat->rmap->N-1);
20257b952d6SSatish Balay     if (im[i] >= rstart_orig && im[i] < rend_orig) {
20357b952d6SSatish Balay       row = im[i] - rstart_orig;
20457b952d6SSatish Balay       for (j=0; j<n; j++) {
20557b952d6SSatish Balay         if (in[j] >= cstart_orig && in[j] < cend_orig) {
20657b952d6SSatish Balay           col = in[j] - cstart_orig;
207db4deed7SKarl Rupp           if (roworiented) value = v[i*n+j];
208db4deed7SKarl Rupp           else             value = v[i+j*m];
209d40312a9SBarry Smith           MatSetValues_SeqBAIJ_A_Private(row,col,value,addv,im[i],in[j]);
210f7d195e4SLawrence Mitchell         } else if (in[j] < 0) {
211f7d195e4SLawrence Mitchell           continue;
212f7d195e4SLawrence Mitchell         } else {
213f7d195e4SLawrence Mitchell           PetscCheck(in[j] < mat->cmap->N,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT,in[j],mat->cmap->N-1);
21457b952d6SSatish Balay           if (mat->was_assembled) {
215905e6a2fSBarry Smith             if (!baij->colmap) {
2169566063dSJacob Faibussowitsch               PetscCall(MatCreateColmap_MPIBAIJ_Private(mat));
217905e6a2fSBarry Smith             }
218aa482453SBarry Smith #if defined(PETSC_USE_CTABLE)
2199566063dSJacob Faibussowitsch             PetscCall(PetscTableFind(baij->colmap,in[j]/bs + 1,&col));
220bba1ac68SSatish Balay             col  = col - 1;
22148e59246SSatish Balay #else
222bba1ac68SSatish Balay             col = baij->colmap[in[j]/bs] - 1;
22348e59246SSatish Balay #endif
224c9ef50b2SBarry Smith             if (col < 0 && !((Mat_SeqBAIJ*)(baij->B->data))->nonew) {
2259566063dSJacob Faibussowitsch               PetscCall(MatDisAssemble_MPIBAIJ(mat));
2268295de27SSatish Balay               col  =  in[j];
2279bf004c3SSatish Balay               /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */
2289bf004c3SSatish Balay               B    = baij->B;
2299bf004c3SSatish Balay               b    = (Mat_SeqBAIJ*)(B)->data;
2309bf004c3SSatish Balay               bimax=b->imax;bi=b->i;bilen=b->ilen;bj=b->j;
2319bf004c3SSatish Balay               ba   =b->a;
232f7d195e4SLawrence Mitchell             } else {
233f7d195e4SLawrence Mitchell               PetscCheck(col >= 0,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", im[i], in[j]);
234f7d195e4SLawrence Mitchell               col += in[j]%bs;
235f7d195e4SLawrence Mitchell             }
2368295de27SSatish Balay           } else col = in[j];
237db4deed7SKarl Rupp           if (roworiented) value = v[i*n+j];
238db4deed7SKarl Rupp           else             value = v[i+j*m];
239d40312a9SBarry Smith           MatSetValues_SeqBAIJ_B_Private(row,col,value,addv,im[i],in[j]);
2409566063dSJacob Faibussowitsch           /* PetscCall(MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv)); */
24157b952d6SSatish Balay         }
24257b952d6SSatish Balay       }
243d64ed03dSBarry Smith     } else {
2445f80ce2aSJacob Faibussowitsch       PetscCheck(!mat->nooffprocentries,PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Setting off process row %" PetscInt_FMT " even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set",im[i]);
24590f02eecSBarry Smith       if (!baij->donotstash) {
2465080c13bSMatthew G Knepley         mat->assembled = PETSC_FALSE;
247ff2fd236SBarry Smith         if (roworiented) {
2489566063dSJacob Faibussowitsch           PetscCall(MatStashValuesRow_Private(&mat->stash,im[i],n,in,v+i*n,PETSC_FALSE));
249ff2fd236SBarry Smith         } else {
2509566063dSJacob Faibussowitsch           PetscCall(MatStashValuesCol_Private(&mat->stash,im[i],n,in,v+i,m,PETSC_FALSE));
25157b952d6SSatish Balay         }
25257b952d6SSatish Balay       }
25357b952d6SSatish Balay     }
25490f02eecSBarry Smith   }
2553a40ed3dSBarry Smith   PetscFunctionReturn(0);
25657b952d6SSatish Balay }
25757b952d6SSatish Balay 
2589fbee547SJacob Faibussowitsch static inline PetscErrorCode MatSetValuesBlocked_SeqBAIJ_Inlined(Mat A,PetscInt row,PetscInt col,const PetscScalar v[],InsertMode is,PetscInt orow,PetscInt ocol)
259880c6e6aSBarry Smith {
260880c6e6aSBarry Smith   Mat_SeqBAIJ       *a = (Mat_SeqBAIJ*)A->data;
2618ab52850SBarry Smith   PetscInt          *rp,low,high,t,ii,jj,nrow,i,rmax,N;
262880c6e6aSBarry Smith   PetscInt          *imax=a->imax,*ai=a->i,*ailen=a->ilen;
2638ab52850SBarry Smith   PetscInt          *aj        =a->j,nonew=a->nonew,bs2=a->bs2,bs=A->rmap->bs;
264880c6e6aSBarry Smith   PetscBool         roworiented=a->roworiented;
265880c6e6aSBarry Smith   const PetscScalar *value     = v;
266880c6e6aSBarry Smith   MatScalar         *ap,*aa = a->a,*bap;
267880c6e6aSBarry Smith 
268880c6e6aSBarry Smith   PetscFunctionBegin;
269880c6e6aSBarry Smith   rp   = aj + ai[row];
270880c6e6aSBarry Smith   ap   = aa + bs2*ai[row];
271880c6e6aSBarry Smith   rmax = imax[row];
272880c6e6aSBarry Smith   nrow = ailen[row];
2738ab52850SBarry Smith   value = v;
2748ab52850SBarry Smith   low = 0;
2758ab52850SBarry Smith   high = nrow;
276880c6e6aSBarry Smith   while (high-low > 7) {
277880c6e6aSBarry Smith     t = (low+high)/2;
278880c6e6aSBarry Smith     if (rp[t] > col) high = t;
279880c6e6aSBarry Smith     else             low  = t;
280880c6e6aSBarry Smith   }
281880c6e6aSBarry Smith   for (i=low; i<high; i++) {
282880c6e6aSBarry Smith     if (rp[i] > col) break;
283880c6e6aSBarry Smith     if (rp[i] == col) {
284880c6e6aSBarry Smith       bap = ap +  bs2*i;
285880c6e6aSBarry Smith       if (roworiented) {
286880c6e6aSBarry Smith         if (is == ADD_VALUES) {
2878ab52850SBarry Smith           for (ii=0; ii<bs; ii++) {
288880c6e6aSBarry Smith             for (jj=ii; jj<bs2; jj+=bs) {
289880c6e6aSBarry Smith               bap[jj] += *value++;
290880c6e6aSBarry Smith             }
291880c6e6aSBarry Smith           }
292880c6e6aSBarry Smith         } else {
2938ab52850SBarry Smith           for (ii=0; ii<bs; ii++) {
294880c6e6aSBarry Smith             for (jj=ii; jj<bs2; jj+=bs) {
295880c6e6aSBarry Smith               bap[jj] = *value++;
296880c6e6aSBarry Smith             }
297880c6e6aSBarry Smith           }
298880c6e6aSBarry Smith         }
299880c6e6aSBarry Smith       } else {
300880c6e6aSBarry Smith         if (is == ADD_VALUES) {
3018ab52850SBarry Smith           for (ii=0; ii<bs; ii++,value+=bs) {
302880c6e6aSBarry Smith             for (jj=0; jj<bs; jj++) {
303880c6e6aSBarry Smith               bap[jj] += value[jj];
304880c6e6aSBarry Smith             }
305880c6e6aSBarry Smith             bap += bs;
306880c6e6aSBarry Smith           }
307880c6e6aSBarry Smith         } else {
3088ab52850SBarry Smith           for (ii=0; ii<bs; ii++,value+=bs) {
309880c6e6aSBarry Smith             for (jj=0; jj<bs; jj++) {
310880c6e6aSBarry Smith               bap[jj]  = value[jj];
311880c6e6aSBarry Smith             }
312880c6e6aSBarry Smith             bap += bs;
313880c6e6aSBarry Smith           }
314880c6e6aSBarry Smith         }
315880c6e6aSBarry Smith       }
316880c6e6aSBarry Smith       goto noinsert2;
317880c6e6aSBarry Smith     }
318880c6e6aSBarry Smith   }
319880c6e6aSBarry Smith   if (nonew == 1) goto noinsert2;
3205f80ce2aSJacob Faibussowitsch   PetscCheck(nonew != -1,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new global block indexed nonzero block (%" PetscInt_FMT ", %" PetscInt_FMT ") in the matrix", orow, ocol);
321880c6e6aSBarry Smith   MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,row,col,rmax,aa,ai,aj,rp,ap,imax,nonew,MatScalar);
322880c6e6aSBarry Smith   N = nrow++ - 1; high++;
323880c6e6aSBarry Smith   /* shift up all the later entries in this row */
3249566063dSJacob Faibussowitsch   PetscCall(PetscArraymove(rp+i+1,rp+i,N-i+1));
3259566063dSJacob Faibussowitsch   PetscCall(PetscArraymove(ap+bs2*(i+1),ap+bs2*i,bs2*(N-i+1)));
326880c6e6aSBarry Smith   rp[i] = col;
327880c6e6aSBarry Smith   bap   = ap +  bs2*i;
328880c6e6aSBarry Smith   if (roworiented) {
3298ab52850SBarry Smith     for (ii=0; ii<bs; ii++) {
330880c6e6aSBarry Smith       for (jj=ii; jj<bs2; jj+=bs) {
331880c6e6aSBarry Smith         bap[jj] = *value++;
332880c6e6aSBarry Smith       }
333880c6e6aSBarry Smith     }
334880c6e6aSBarry Smith   } else {
3358ab52850SBarry Smith     for (ii=0; ii<bs; ii++) {
336880c6e6aSBarry Smith       for (jj=0; jj<bs; jj++) {
337880c6e6aSBarry Smith         *bap++ = *value++;
338880c6e6aSBarry Smith       }
339880c6e6aSBarry Smith     }
340880c6e6aSBarry Smith   }
341880c6e6aSBarry Smith   noinsert2:;
342880c6e6aSBarry Smith   ailen[row] = nrow;
343880c6e6aSBarry Smith   PetscFunctionReturn(0);
344880c6e6aSBarry Smith }
345880c6e6aSBarry Smith 
3468ab52850SBarry Smith /*
3478ab52850SBarry Smith     This routine should be optimized so that the block copy at ** Here a copy is required ** below is not needed
3488ab52850SBarry Smith     by passing additional stride information into the MatSetValuesBlocked_SeqBAIJ_Inlined() routine
3498ab52850SBarry Smith */
35097e5c40aSBarry Smith PetscErrorCode MatSetValuesBlocked_MPIBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv)
351ab26458aSBarry Smith {
352ab26458aSBarry Smith   Mat_MPIBAIJ       *baij = (Mat_MPIBAIJ*)mat->data;
353dd6ea824SBarry Smith   const PetscScalar *value;
354f15d580aSBarry Smith   MatScalar         *barray     = baij->barray;
355ace3abfcSBarry Smith   PetscBool         roworiented = baij->roworiented;
356899cda47SBarry Smith   PetscInt          i,j,ii,jj,row,col,rstart=baij->rstartbs;
357899cda47SBarry Smith   PetscInt          rend=baij->rendbs,cstart=baij->cstartbs,stepval;
358d0f46423SBarry Smith   PetscInt          cend=baij->cendbs,bs=mat->rmap->bs,bs2=baij->bs2;
359ab26458aSBarry Smith 
360b16ae2b1SBarry Smith   PetscFunctionBegin;
36130793edcSSatish Balay   if (!barray) {
3629566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(bs2,&barray));
36382502324SSatish Balay     baij->barray = barray;
36430793edcSSatish Balay   }
36530793edcSSatish Balay 
36626fbe8dcSKarl Rupp   if (roworiented) stepval = (n-1)*bs;
36726fbe8dcSKarl Rupp   else stepval = (m-1)*bs;
36826fbe8dcSKarl Rupp 
369ab26458aSBarry Smith   for (i=0; i<m; i++) {
3705ef9f2a5SBarry Smith     if (im[i] < 0) continue;
3716bdcaf15SBarry Smith     PetscCheck(im[i] < baij->Mbs,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Block indexed row too large %" PetscInt_FMT " max %" PetscInt_FMT,im[i],baij->Mbs-1);
372ab26458aSBarry Smith     if (im[i] >= rstart && im[i] < rend) {
373ab26458aSBarry Smith       row = im[i] - rstart;
374ab26458aSBarry Smith       for (j=0; j<n; j++) {
37515b57d14SSatish Balay         /* If NumCol = 1 then a copy is not required */
37615b57d14SSatish Balay         if ((roworiented) && (n == 1)) {
377f15d580aSBarry Smith           barray = (MatScalar*)v + i*bs2;
37815b57d14SSatish Balay         } else if ((!roworiented) && (m == 1)) {
379f15d580aSBarry Smith           barray = (MatScalar*)v + j*bs2;
38015b57d14SSatish Balay         } else { /* Here a copy is required */
381ab26458aSBarry Smith           if (roworiented) {
38253ef36baSBarry Smith             value = v + (i*(stepval+bs) + j)*bs;
383ab26458aSBarry Smith           } else {
38453ef36baSBarry Smith             value = v + (j*(stepval+bs) + i)*bs;
385abef11f7SSatish Balay           }
38653ef36baSBarry Smith           for (ii=0; ii<bs; ii++,value+=bs+stepval) {
38726fbe8dcSKarl Rupp             for (jj=0; jj<bs; jj++) barray[jj] = value[jj];
38853ef36baSBarry Smith             barray += bs;
38947513183SBarry Smith           }
39030793edcSSatish Balay           barray -= bs2;
39115b57d14SSatish Balay         }
392abef11f7SSatish Balay 
393abef11f7SSatish Balay         if (in[j] >= cstart && in[j] < cend) {
394abef11f7SSatish Balay           col  = in[j] - cstart;
3959566063dSJacob Faibussowitsch           PetscCall(MatSetValuesBlocked_SeqBAIJ_Inlined(baij->A,row,col,barray,addv,im[i],in[j]));
396f7d195e4SLawrence Mitchell         } else if (in[j] < 0) {
397f7d195e4SLawrence Mitchell           continue;
398f7d195e4SLawrence Mitchell         } else {
399f7d195e4SLawrence Mitchell           PetscCheck(in[j] < baij->Nbs,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Block indexed column too large %" PetscInt_FMT " max %" PetscInt_FMT,in[j],baij->Nbs-1);
400ab26458aSBarry Smith           if (mat->was_assembled) {
401ab26458aSBarry Smith             if (!baij->colmap) {
4029566063dSJacob Faibussowitsch               PetscCall(MatCreateColmap_MPIBAIJ_Private(mat));
403ab26458aSBarry Smith             }
404a5eb4965SSatish Balay 
4052515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
406aa482453SBarry Smith #if defined(PETSC_USE_CTABLE)
407b24ad042SBarry Smith             { PetscInt data;
4089566063dSJacob Faibussowitsch               PetscCall(PetscTableFind(baij->colmap,in[j]+1,&data));
40908401ef6SPierre Jolivet               PetscCheck((data - 1) % bs == 0,PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap");
410fa46199cSSatish Balay             }
41148e59246SSatish Balay #else
41208401ef6SPierre Jolivet             PetscCheck((baij->colmap[in[j]] - 1) % bs == 0,PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap");
413a5eb4965SSatish Balay #endif
41448e59246SSatish Balay #endif
415aa482453SBarry Smith #if defined(PETSC_USE_CTABLE)
4169566063dSJacob Faibussowitsch             PetscCall(PetscTableFind(baij->colmap,in[j]+1,&col));
417fa46199cSSatish Balay             col  = (col - 1)/bs;
41848e59246SSatish Balay #else
419a5eb4965SSatish Balay             col = (baij->colmap[in[j]] - 1)/bs;
42048e59246SSatish Balay #endif
4210e9bae81SBarry Smith             if (col < 0 && !((Mat_SeqBAIJ*)(baij->B->data))->nonew) {
4229566063dSJacob Faibussowitsch               PetscCall(MatDisAssemble_MPIBAIJ(mat));
423ab26458aSBarry Smith               col  =  in[j];
4245f80ce2aSJacob Faibussowitsch             } else PetscCheck(col >= 0,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new blocked indexed nonzero block (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix",im[i],in[j]);
425db4deed7SKarl Rupp           } else col = in[j];
4269566063dSJacob Faibussowitsch           PetscCall(MatSetValuesBlocked_SeqBAIJ_Inlined(baij->B,row,col,barray,addv,im[i],in[j]));
427ab26458aSBarry Smith         }
428ab26458aSBarry Smith       }
429d64ed03dSBarry Smith     } else {
4305f80ce2aSJacob Faibussowitsch       PetscCheck(!mat->nooffprocentries,PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Setting off process block indexed row %" PetscInt_FMT " even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set",im[i]);
431ab26458aSBarry Smith       if (!baij->donotstash) {
432ff2fd236SBarry Smith         if (roworiented) {
4339566063dSJacob Faibussowitsch           PetscCall(MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i));
434ff2fd236SBarry Smith         } else {
4359566063dSJacob Faibussowitsch           PetscCall(MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i));
436ff2fd236SBarry Smith         }
437abef11f7SSatish Balay       }
438ab26458aSBarry Smith     }
439ab26458aSBarry Smith   }
4403a40ed3dSBarry Smith   PetscFunctionReturn(0);
441ab26458aSBarry Smith }
4426fa18ffdSBarry Smith 
4430bdbc534SSatish Balay #define HASH_KEY 0.6180339887
444b24ad042SBarry Smith #define HASH(size,key,tmp) (tmp = (key)*HASH_KEY,(PetscInt)((size)*(tmp-(PetscInt)tmp)))
445b24ad042SBarry Smith /* #define HASH(size,key) ((PetscInt)((size)*fmod(((key)*HASH_KEY),1))) */
446b24ad042SBarry Smith /* #define HASH(size,key,tmp) ((PetscInt)((size)*fmod(((key)*HASH_KEY),1))) */
44797e5c40aSBarry Smith PetscErrorCode MatSetValues_MPIBAIJ_HT(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv)
4480bdbc534SSatish Balay {
4490bdbc534SSatish Balay   Mat_MPIBAIJ    *baij       = (Mat_MPIBAIJ*)mat->data;
450ace3abfcSBarry Smith   PetscBool      roworiented = baij->roworiented;
451b24ad042SBarry Smith   PetscInt       i,j,row,col;
452d0f46423SBarry Smith   PetscInt       rstart_orig=mat->rmap->rstart;
453d0f46423SBarry Smith   PetscInt       rend_orig  =mat->rmap->rend,Nbs=baij->Nbs;
454d0f46423SBarry Smith   PetscInt       h1,key,size=baij->ht_size,bs=mat->rmap->bs,*HT=baij->ht,idx;
455329f5518SBarry Smith   PetscReal      tmp;
4563eda8832SBarry Smith   MatScalar      **HD = baij->hd,value;
457b24ad042SBarry Smith   PetscInt       total_ct=baij->ht_total_ct,insert_ct=baij->ht_insert_ct;
4580bdbc534SSatish Balay 
4590bdbc534SSatish Balay   PetscFunctionBegin;
4600bdbc534SSatish Balay   for (i=0; i<m; i++) {
46176bd3646SJed Brown     if (PetscDefined(USE_DEBUG)) {
4625f80ce2aSJacob Faibussowitsch       PetscCheck(im[i] >= 0,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative row");
4635f80ce2aSJacob Faibussowitsch       PetscCheck(im[i] < mat->rmap->N,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT,im[i],mat->rmap->N-1);
46476bd3646SJed Brown     }
4650bdbc534SSatish Balay     row = im[i];
466c2760754SSatish Balay     if (row >= rstart_orig && row < rend_orig) {
4670bdbc534SSatish Balay       for (j=0; j<n; j++) {
4680bdbc534SSatish Balay         col = in[j];
469db4deed7SKarl Rupp         if (roworiented) value = v[i*n+j];
470db4deed7SKarl Rupp         else             value = v[i+j*m];
471b24ad042SBarry Smith         /* Look up PetscInto the Hash Table */
472c2760754SSatish Balay         key = (row/bs)*Nbs+(col/bs)+1;
473c2760754SSatish Balay         h1  = HASH(size,key,tmp);
4740bdbc534SSatish Balay 
475c2760754SSatish Balay         idx = h1;
47676bd3646SJed Brown         if (PetscDefined(USE_DEBUG)) {
477187ce0cbSSatish Balay           insert_ct++;
478187ce0cbSSatish Balay           total_ct++;
479187ce0cbSSatish Balay           if (HT[idx] != key) {
480187ce0cbSSatish Balay             for (idx=h1; (idx<size) && (HT[idx]!=key); idx++,total_ct++) ;
481187ce0cbSSatish Balay             if (idx == size) {
482187ce0cbSSatish Balay               for (idx=0; (idx<h1) && (HT[idx]!=key); idx++,total_ct++) ;
4835f80ce2aSJacob Faibussowitsch               PetscCheck(idx != h1,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"(%" PetscInt_FMT ",%" PetscInt_FMT ") has no entry in the hash table", row, col);
484187ce0cbSSatish Balay             }
485187ce0cbSSatish Balay           }
48676bd3646SJed Brown         } else if (HT[idx] != key) {
487c2760754SSatish Balay           for (idx=h1; (idx<size) && (HT[idx]!=key); idx++) ;
488c2760754SSatish Balay           if (idx == size) {
489c2760754SSatish Balay             for (idx=0; (idx<h1) && (HT[idx]!=key); idx++) ;
4905f80ce2aSJacob Faibussowitsch             PetscCheck(idx != h1,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"(%" PetscInt_FMT ",%" PetscInt_FMT ") has no entry in the hash table", row, col);
491c2760754SSatish Balay           }
492c2760754SSatish Balay         }
493c2760754SSatish Balay         /* A HASH table entry is found, so insert the values at the correct address */
494c2760754SSatish Balay         if (addv == ADD_VALUES) *(HD[idx]+ (col % bs)*bs + (row % bs)) += value;
495c2760754SSatish Balay         else                    *(HD[idx]+ (col % bs)*bs + (row % bs))  = value;
4960bdbc534SSatish Balay       }
49726fbe8dcSKarl Rupp     } else if (!baij->donotstash) {
498ff2fd236SBarry Smith       if (roworiented) {
4999566063dSJacob Faibussowitsch         PetscCall(MatStashValuesRow_Private(&mat->stash,im[i],n,in,v+i*n,PETSC_FALSE));
500ff2fd236SBarry Smith       } else {
5019566063dSJacob Faibussowitsch         PetscCall(MatStashValuesCol_Private(&mat->stash,im[i],n,in,v+i,m,PETSC_FALSE));
5020bdbc534SSatish Balay       }
5030bdbc534SSatish Balay     }
5040bdbc534SSatish Balay   }
50576bd3646SJed Brown   if (PetscDefined(USE_DEBUG)) {
506abf3b562SBarry Smith     baij->ht_total_ct  += total_ct;
507abf3b562SBarry Smith     baij->ht_insert_ct += insert_ct;
50876bd3646SJed Brown   }
5090bdbc534SSatish Balay   PetscFunctionReturn(0);
5100bdbc534SSatish Balay }
5110bdbc534SSatish Balay 
51297e5c40aSBarry Smith PetscErrorCode MatSetValuesBlocked_MPIBAIJ_HT(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv)
5130bdbc534SSatish Balay {
5140bdbc534SSatish Balay   Mat_MPIBAIJ       *baij       = (Mat_MPIBAIJ*)mat->data;
515ace3abfcSBarry Smith   PetscBool         roworiented = baij->roworiented;
516b24ad042SBarry Smith   PetscInt          i,j,ii,jj,row,col;
517899cda47SBarry Smith   PetscInt          rstart=baij->rstartbs;
518d0f46423SBarry Smith   PetscInt          rend  =mat->rmap->rend,stepval,bs=mat->rmap->bs,bs2=baij->bs2,nbs2=n*bs2;
519b24ad042SBarry Smith   PetscInt          h1,key,size=baij->ht_size,idx,*HT=baij->ht,Nbs=baij->Nbs;
520329f5518SBarry Smith   PetscReal         tmp;
5213eda8832SBarry Smith   MatScalar         **HD = baij->hd,*baij_a;
522dd6ea824SBarry Smith   const PetscScalar *v_t,*value;
523b24ad042SBarry Smith   PetscInt          total_ct=baij->ht_total_ct,insert_ct=baij->ht_insert_ct;
5240bdbc534SSatish Balay 
525d0a41580SSatish Balay   PetscFunctionBegin;
52626fbe8dcSKarl Rupp   if (roworiented) stepval = (n-1)*bs;
52726fbe8dcSKarl Rupp   else stepval = (m-1)*bs;
52826fbe8dcSKarl Rupp 
5290bdbc534SSatish Balay   for (i=0; i<m; i++) {
53076bd3646SJed Brown     if (PetscDefined(USE_DEBUG)) {
5315f80ce2aSJacob Faibussowitsch       PetscCheck(im[i] >= 0,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %" PetscInt_FMT,im[i]);
5325f80ce2aSJacob Faibussowitsch       PetscCheck(im[i] < baij->Mbs,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT,im[i],baij->Mbs-1);
53376bd3646SJed Brown     }
5340bdbc534SSatish Balay     row = im[i];
535ab715e2cSSatish Balay     v_t = v + i*nbs2;
536c2760754SSatish Balay     if (row >= rstart && row < rend) {
5370bdbc534SSatish Balay       for (j=0; j<n; j++) {
5380bdbc534SSatish Balay         col = in[j];
5390bdbc534SSatish Balay 
5400bdbc534SSatish Balay         /* Look up into the Hash Table */
541c2760754SSatish Balay         key = row*Nbs+col+1;
542c2760754SSatish Balay         h1  = HASH(size,key,tmp);
5430bdbc534SSatish Balay 
544c2760754SSatish Balay         idx = h1;
54576bd3646SJed Brown         if (PetscDefined(USE_DEBUG)) {
546187ce0cbSSatish Balay           total_ct++;
547187ce0cbSSatish Balay           insert_ct++;
548187ce0cbSSatish Balay           if (HT[idx] != key) {
549187ce0cbSSatish Balay             for (idx=h1; (idx<size) && (HT[idx]!=key); idx++,total_ct++) ;
550187ce0cbSSatish Balay             if (idx == size) {
551187ce0cbSSatish Balay               for (idx=0; (idx<h1) && (HT[idx]!=key); idx++,total_ct++) ;
5525f80ce2aSJacob Faibussowitsch               PetscCheck(idx != h1,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"(%" PetscInt_FMT ",%" PetscInt_FMT ") has no entry in the hash table", row, col);
553187ce0cbSSatish Balay             }
554187ce0cbSSatish Balay           }
55576bd3646SJed Brown         } else if (HT[idx] != key) {
556c2760754SSatish Balay           for (idx=h1; (idx<size) && (HT[idx]!=key); idx++) ;
557c2760754SSatish Balay           if (idx == size) {
558c2760754SSatish Balay             for (idx=0; (idx<h1) && (HT[idx]!=key); idx++) ;
5595f80ce2aSJacob Faibussowitsch             PetscCheck(idx != h1,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"(%" PetscInt_FMT ",%" PetscInt_FMT ") has no entry in the hash table", row, col);
560c2760754SSatish Balay           }
561c2760754SSatish Balay         }
562c2760754SSatish Balay         baij_a = HD[idx];
5630bdbc534SSatish Balay         if (roworiented) {
564c2760754SSatish Balay           /*value = v + i*(stepval+bs)*bs + j*bs;*/
565187ce0cbSSatish Balay           /* value = v + (i*(stepval+bs)+j)*bs; */
566187ce0cbSSatish Balay           value = v_t;
567187ce0cbSSatish Balay           v_t  += bs;
568fef45726SSatish Balay           if (addv == ADD_VALUES) {
569c2760754SSatish Balay             for (ii=0; ii<bs; ii++,value+=stepval) {
570c2760754SSatish Balay               for (jj=ii; jj<bs2; jj+=bs) {
571fef45726SSatish Balay                 baij_a[jj] += *value++;
572b4cc0f5aSSatish Balay               }
573b4cc0f5aSSatish Balay             }
574fef45726SSatish Balay           } else {
575c2760754SSatish Balay             for (ii=0; ii<bs; ii++,value+=stepval) {
576c2760754SSatish Balay               for (jj=ii; jj<bs2; jj+=bs) {
577fef45726SSatish Balay                 baij_a[jj] = *value++;
578fef45726SSatish Balay               }
579fef45726SSatish Balay             }
580fef45726SSatish Balay           }
5810bdbc534SSatish Balay         } else {
5820bdbc534SSatish Balay           value = v + j*(stepval+bs)*bs + i*bs;
583fef45726SSatish Balay           if (addv == ADD_VALUES) {
584b4cc0f5aSSatish Balay             for (ii=0; ii<bs; ii++,value+=stepval,baij_a+=bs) {
5850bdbc534SSatish Balay               for (jj=0; jj<bs; jj++) {
586fef45726SSatish Balay                 baij_a[jj] += *value++;
587fef45726SSatish Balay               }
588fef45726SSatish Balay             }
589fef45726SSatish Balay           } else {
590fef45726SSatish Balay             for (ii=0; ii<bs; ii++,value+=stepval,baij_a+=bs) {
591fef45726SSatish Balay               for (jj=0; jj<bs; jj++) {
592fef45726SSatish Balay                 baij_a[jj] = *value++;
593fef45726SSatish Balay               }
594b4cc0f5aSSatish Balay             }
5950bdbc534SSatish Balay           }
5960bdbc534SSatish Balay         }
5970bdbc534SSatish Balay       }
5980bdbc534SSatish Balay     } else {
5990bdbc534SSatish Balay       if (!baij->donotstash) {
6000bdbc534SSatish Balay         if (roworiented) {
6019566063dSJacob Faibussowitsch           PetscCall(MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i));
6020bdbc534SSatish Balay         } else {
6039566063dSJacob Faibussowitsch           PetscCall(MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i));
6040bdbc534SSatish Balay         }
6050bdbc534SSatish Balay       }
6060bdbc534SSatish Balay     }
6070bdbc534SSatish Balay   }
60876bd3646SJed Brown   if (PetscDefined(USE_DEBUG)) {
609abf3b562SBarry Smith     baij->ht_total_ct  += total_ct;
610abf3b562SBarry Smith     baij->ht_insert_ct += insert_ct;
61176bd3646SJed Brown   }
6120bdbc534SSatish Balay   PetscFunctionReturn(0);
6130bdbc534SSatish Balay }
614133cdb44SSatish Balay 
615b24ad042SBarry Smith PetscErrorCode MatGetValues_MPIBAIJ(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[])
616d6de1c52SSatish Balay {
617d6de1c52SSatish Balay   Mat_MPIBAIJ    *baij = (Mat_MPIBAIJ*)mat->data;
618d0f46423SBarry Smith   PetscInt       bs       = mat->rmap->bs,i,j,bsrstart = mat->rmap->rstart,bsrend = mat->rmap->rend;
619d0f46423SBarry Smith   PetscInt       bscstart = mat->cmap->rstart,bscend = mat->cmap->rend,row,col,data;
620d6de1c52SSatish Balay 
621133cdb44SSatish Balay   PetscFunctionBegin;
622d6de1c52SSatish Balay   for (i=0; i<m; i++) {
62354c59aa7SJacob Faibussowitsch     if (idxm[i] < 0) continue; /* negative row */
62454c59aa7SJacob Faibussowitsch     PetscCheck(idxm[i] < mat->rmap->N,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT,idxm[i],mat->rmap->N-1);
625d6de1c52SSatish Balay     if (idxm[i] >= bsrstart && idxm[i] < bsrend) {
626d6de1c52SSatish Balay       row = idxm[i] - bsrstart;
627d6de1c52SSatish Balay       for (j=0; j<n; j++) {
62854c59aa7SJacob Faibussowitsch         if (idxn[j] < 0) continue; /* negative column */
62954c59aa7SJacob Faibussowitsch         PetscCheck(idxn[j] < mat->cmap->N,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT,idxn[j],mat->cmap->N-1);
630d6de1c52SSatish Balay         if (idxn[j] >= bscstart && idxn[j] < bscend) {
631d6de1c52SSatish Balay           col  = idxn[j] - bscstart;
6329566063dSJacob Faibussowitsch           PetscCall(MatGetValues_SeqBAIJ(baij->A,1,&row,1,&col,v+i*n+j));
633d64ed03dSBarry Smith         } else {
634905e6a2fSBarry Smith           if (!baij->colmap) {
6359566063dSJacob Faibussowitsch             PetscCall(MatCreateColmap_MPIBAIJ_Private(mat));
636905e6a2fSBarry Smith           }
637aa482453SBarry Smith #if defined(PETSC_USE_CTABLE)
6389566063dSJacob Faibussowitsch           PetscCall(PetscTableFind(baij->colmap,idxn[j]/bs+1,&data));
639fa46199cSSatish Balay           data--;
64048e59246SSatish Balay #else
64148e59246SSatish Balay           data = baij->colmap[idxn[j]/bs]-1;
64248e59246SSatish Balay #endif
64348e59246SSatish Balay           if ((data < 0) || (baij->garray[data/bs] != idxn[j]/bs)) *(v+i*n+j) = 0.0;
644d9d09a02SSatish Balay           else {
64548e59246SSatish Balay             col  = data + idxn[j]%bs;
6469566063dSJacob Faibussowitsch             PetscCall(MatGetValues_SeqBAIJ(baij->B,1,&row,1,&col,v+i*n+j));
647d6de1c52SSatish Balay           }
648d6de1c52SSatish Balay         }
649d6de1c52SSatish Balay       }
650f23aa3ddSBarry Smith     } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local values currently supported");
651d6de1c52SSatish Balay   }
6523a40ed3dSBarry Smith   PetscFunctionReturn(0);
653d6de1c52SSatish Balay }
654d6de1c52SSatish Balay 
655dfbe8321SBarry Smith PetscErrorCode MatNorm_MPIBAIJ(Mat mat,NormType type,PetscReal *nrm)
656d6de1c52SSatish Balay {
657d6de1c52SSatish Balay   Mat_MPIBAIJ    *baij = (Mat_MPIBAIJ*)mat->data;
658d6de1c52SSatish Balay   Mat_SeqBAIJ    *amat = (Mat_SeqBAIJ*)baij->A->data,*bmat = (Mat_SeqBAIJ*)baij->B->data;
659d0f46423SBarry Smith   PetscInt       i,j,bs2=baij->bs2,bs=baij->A->rmap->bs,nz,row,col;
660329f5518SBarry Smith   PetscReal      sum = 0.0;
6613eda8832SBarry Smith   MatScalar      *v;
662d6de1c52SSatish Balay 
663d64ed03dSBarry Smith   PetscFunctionBegin;
664d6de1c52SSatish Balay   if (baij->size == 1) {
6659566063dSJacob Faibussowitsch     PetscCall(MatNorm(baij->A,type,nrm));
666d6de1c52SSatish Balay   } else {
667d6de1c52SSatish Balay     if (type == NORM_FROBENIUS) {
668d6de1c52SSatish Balay       v  = amat->a;
6698a62d963SHong Zhang       nz = amat->nz*bs2;
6708a62d963SHong Zhang       for (i=0; i<nz; i++) {
671329f5518SBarry Smith         sum += PetscRealPart(PetscConj(*v)*(*v)); v++;
672d6de1c52SSatish Balay       }
673d6de1c52SSatish Balay       v  = bmat->a;
6748a62d963SHong Zhang       nz = bmat->nz*bs2;
6758a62d963SHong Zhang       for (i=0; i<nz; i++) {
676329f5518SBarry Smith         sum += PetscRealPart(PetscConj(*v)*(*v)); v++;
677d6de1c52SSatish Balay       }
6781c2dc1cbSBarry Smith       PetscCall(MPIU_Allreduce(&sum,nrm,1,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)mat)));
6798f1a2a5eSBarry Smith       *nrm = PetscSqrtReal(*nrm);
6808a62d963SHong Zhang     } else if (type == NORM_1) { /* max column sum */
6818a62d963SHong Zhang       PetscReal *tmp,*tmp2;
682899cda47SBarry Smith       PetscInt  *jj,*garray=baij->garray,cstart=baij->rstartbs;
6839566063dSJacob Faibussowitsch       PetscCall(PetscCalloc1(mat->cmap->N,&tmp));
6849566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(mat->cmap->N,&tmp2));
6858a62d963SHong Zhang       v    = amat->a; jj = amat->j;
6868a62d963SHong Zhang       for (i=0; i<amat->nz; i++) {
6878a62d963SHong Zhang         for (j=0; j<bs; j++) {
6888a62d963SHong Zhang           col = bs*(cstart + *jj) + j; /* column index */
6898a62d963SHong Zhang           for (row=0; row<bs; row++) {
6908a62d963SHong Zhang             tmp[col] += PetscAbsScalar(*v);  v++;
6918a62d963SHong Zhang           }
6928a62d963SHong Zhang         }
6938a62d963SHong Zhang         jj++;
6948a62d963SHong Zhang       }
6958a62d963SHong Zhang       v = bmat->a; jj = bmat->j;
6968a62d963SHong Zhang       for (i=0; i<bmat->nz; i++) {
6978a62d963SHong Zhang         for (j=0; j<bs; j++) {
6988a62d963SHong Zhang           col = bs*garray[*jj] + j;
6998a62d963SHong Zhang           for (row=0; row<bs; row++) {
7008a62d963SHong Zhang             tmp[col] += PetscAbsScalar(*v); v++;
7018a62d963SHong Zhang           }
7028a62d963SHong Zhang         }
7038a62d963SHong Zhang         jj++;
7048a62d963SHong Zhang       }
7051c2dc1cbSBarry Smith       PetscCall(MPIU_Allreduce(tmp,tmp2,mat->cmap->N,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)mat)));
7068a62d963SHong Zhang       *nrm = 0.0;
707d0f46423SBarry Smith       for (j=0; j<mat->cmap->N; j++) {
7088a62d963SHong Zhang         if (tmp2[j] > *nrm) *nrm = tmp2[j];
7098a62d963SHong Zhang       }
7109566063dSJacob Faibussowitsch       PetscCall(PetscFree(tmp));
7119566063dSJacob Faibussowitsch       PetscCall(PetscFree(tmp2));
7128a62d963SHong Zhang     } else if (type == NORM_INFINITY) { /* max row sum */
713577dd1f9SKris Buschelman       PetscReal *sums;
7149566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(bs,&sums));
7158a62d963SHong Zhang       sum  = 0.0;
7168a62d963SHong Zhang       for (j=0; j<amat->mbs; j++) {
7178a62d963SHong Zhang         for (row=0; row<bs; row++) sums[row] = 0.0;
7188a62d963SHong Zhang         v  = amat->a + bs2*amat->i[j];
7198a62d963SHong Zhang         nz = amat->i[j+1]-amat->i[j];
7208a62d963SHong Zhang         for (i=0; i<nz; i++) {
7218a62d963SHong Zhang           for (col=0; col<bs; col++) {
7228a62d963SHong Zhang             for (row=0; row<bs; row++) {
7238a62d963SHong Zhang               sums[row] += PetscAbsScalar(*v); v++;
7248a62d963SHong Zhang             }
7258a62d963SHong Zhang           }
7268a62d963SHong Zhang         }
7278a62d963SHong Zhang         v  = bmat->a + bs2*bmat->i[j];
7288a62d963SHong Zhang         nz = bmat->i[j+1]-bmat->i[j];
7298a62d963SHong Zhang         for (i=0; i<nz; i++) {
7308a62d963SHong Zhang           for (col=0; col<bs; col++) {
7318a62d963SHong Zhang             for (row=0; row<bs; row++) {
7328a62d963SHong Zhang               sums[row] += PetscAbsScalar(*v); v++;
7338a62d963SHong Zhang             }
7348a62d963SHong Zhang           }
7358a62d963SHong Zhang         }
7368a62d963SHong Zhang         for (row=0; row<bs; row++) {
7378a62d963SHong Zhang           if (sums[row] > sum) sum = sums[row];
7388a62d963SHong Zhang         }
7398a62d963SHong Zhang       }
7401c2dc1cbSBarry Smith       PetscCall(MPIU_Allreduce(&sum,nrm,1,MPIU_REAL,MPIU_MAX,PetscObjectComm((PetscObject)mat)));
7419566063dSJacob Faibussowitsch       PetscCall(PetscFree(sums));
742ce94432eSBarry Smith     } else SETERRQ(PetscObjectComm((PetscObject)mat),PETSC_ERR_SUP,"No support for this norm yet");
743d64ed03dSBarry Smith   }
7443a40ed3dSBarry Smith   PetscFunctionReturn(0);
745d6de1c52SSatish Balay }
74657b952d6SSatish Balay 
747fef45726SSatish Balay /*
748fef45726SSatish Balay   Creates the hash table, and sets the table
749fef45726SSatish Balay   This table is created only once.
750fef45726SSatish Balay   If new entried need to be added to the matrix
751fef45726SSatish Balay   then the hash table has to be destroyed and
752fef45726SSatish Balay   recreated.
753fef45726SSatish Balay */
754dfbe8321SBarry Smith PetscErrorCode MatCreateHashTable_MPIBAIJ_Private(Mat mat,PetscReal factor)
755596b8d2eSBarry Smith {
756596b8d2eSBarry Smith   Mat_MPIBAIJ    *baij = (Mat_MPIBAIJ*)mat->data;
757596b8d2eSBarry Smith   Mat            A     = baij->A,B=baij->B;
758596b8d2eSBarry Smith   Mat_SeqBAIJ    *a    = (Mat_SeqBAIJ*)A->data,*b=(Mat_SeqBAIJ*)B->data;
759b24ad042SBarry Smith   PetscInt       i,j,k,nz=a->nz+b->nz,h1,*ai=a->i,*aj=a->j,*bi=b->i,*bj=b->j;
760fca92195SBarry Smith   PetscInt       ht_size,bs2=baij->bs2,rstart=baij->rstartbs;
761899cda47SBarry Smith   PetscInt       cstart=baij->cstartbs,*garray=baij->garray,row,col,Nbs=baij->Nbs;
762b24ad042SBarry Smith   PetscInt       *HT,key;
7633eda8832SBarry Smith   MatScalar      **HD;
764329f5518SBarry Smith   PetscReal      tmp;
7656cf91177SBarry Smith #if defined(PETSC_USE_INFO)
766b24ad042SBarry Smith   PetscInt ct=0,max=0;
7674a15367fSSatish Balay #endif
768fef45726SSatish Balay 
769d64ed03dSBarry Smith   PetscFunctionBegin;
770fca92195SBarry Smith   if (baij->ht) PetscFunctionReturn(0);
771fef45726SSatish Balay 
772fca92195SBarry Smith   baij->ht_size = (PetscInt)(factor*nz);
773fca92195SBarry Smith   ht_size       = baij->ht_size;
7740bdbc534SSatish Balay 
775fef45726SSatish Balay   /* Allocate Memory for Hash Table */
7769566063dSJacob Faibussowitsch   PetscCall(PetscCalloc2(ht_size,&baij->hd,ht_size,&baij->ht));
777b9e4cc15SSatish Balay   HD   = baij->hd;
778a07cd24cSSatish Balay   HT   = baij->ht;
779b9e4cc15SSatish Balay 
780596b8d2eSBarry Smith   /* Loop Over A */
7810bdbc534SSatish Balay   for (i=0; i<a->mbs; i++) {
782596b8d2eSBarry Smith     for (j=ai[i]; j<ai[i+1]; j++) {
7830bdbc534SSatish Balay       row = i+rstart;
7840bdbc534SSatish Balay       col = aj[j]+cstart;
785596b8d2eSBarry Smith 
786187ce0cbSSatish Balay       key = row*Nbs + col + 1;
787fca92195SBarry Smith       h1  = HASH(ht_size,key,tmp);
788fca92195SBarry Smith       for (k=0; k<ht_size; k++) {
789fca92195SBarry Smith         if (!HT[(h1+k)%ht_size]) {
790fca92195SBarry Smith           HT[(h1+k)%ht_size] = key;
791fca92195SBarry Smith           HD[(h1+k)%ht_size] = a->a + j*bs2;
792596b8d2eSBarry Smith           break;
7936cf91177SBarry Smith #if defined(PETSC_USE_INFO)
794187ce0cbSSatish Balay         } else {
795187ce0cbSSatish Balay           ct++;
796187ce0cbSSatish Balay #endif
797596b8d2eSBarry Smith         }
798187ce0cbSSatish Balay       }
7996cf91177SBarry Smith #if defined(PETSC_USE_INFO)
800187ce0cbSSatish Balay       if (k> max) max = k;
801187ce0cbSSatish Balay #endif
802596b8d2eSBarry Smith     }
803596b8d2eSBarry Smith   }
804596b8d2eSBarry Smith   /* Loop Over B */
8050bdbc534SSatish Balay   for (i=0; i<b->mbs; i++) {
806596b8d2eSBarry Smith     for (j=bi[i]; j<bi[i+1]; j++) {
8070bdbc534SSatish Balay       row = i+rstart;
8080bdbc534SSatish Balay       col = garray[bj[j]];
809187ce0cbSSatish Balay       key = row*Nbs + col + 1;
810fca92195SBarry Smith       h1  = HASH(ht_size,key,tmp);
811fca92195SBarry Smith       for (k=0; k<ht_size; k++) {
812fca92195SBarry Smith         if (!HT[(h1+k)%ht_size]) {
813fca92195SBarry Smith           HT[(h1+k)%ht_size] = key;
814fca92195SBarry Smith           HD[(h1+k)%ht_size] = b->a + j*bs2;
815596b8d2eSBarry Smith           break;
8166cf91177SBarry Smith #if defined(PETSC_USE_INFO)
817187ce0cbSSatish Balay         } else {
818187ce0cbSSatish Balay           ct++;
819187ce0cbSSatish Balay #endif
820596b8d2eSBarry Smith         }
821187ce0cbSSatish Balay       }
8226cf91177SBarry Smith #if defined(PETSC_USE_INFO)
823187ce0cbSSatish Balay       if (k> max) max = k;
824187ce0cbSSatish Balay #endif
825596b8d2eSBarry Smith     }
826596b8d2eSBarry Smith   }
827596b8d2eSBarry Smith 
828596b8d2eSBarry Smith   /* Print Summary */
8296cf91177SBarry Smith #if defined(PETSC_USE_INFO)
830fca92195SBarry Smith   for (i=0,j=0; i<ht_size; i++) {
83126fbe8dcSKarl Rupp     if (HT[i]) j++;
832c38d4ed2SBarry Smith   }
8339566063dSJacob Faibussowitsch   PetscCall(PetscInfo(mat,"Average Search = %5.2g,max search = %" PetscInt_FMT "\n",(!j) ? (double)0.0:(double)(((PetscReal)(ct+j))/(double)j),max));
834187ce0cbSSatish Balay #endif
8353a40ed3dSBarry Smith   PetscFunctionReturn(0);
836596b8d2eSBarry Smith }
83757b952d6SSatish Balay 
838dfbe8321SBarry Smith PetscErrorCode MatAssemblyBegin_MPIBAIJ(Mat mat,MatAssemblyType mode)
839bbb85fb3SSatish Balay {
840bbb85fb3SSatish Balay   Mat_MPIBAIJ    *baij = (Mat_MPIBAIJ*)mat->data;
841b24ad042SBarry Smith   PetscInt       nstash,reallocs;
842bbb85fb3SSatish Balay 
843bbb85fb3SSatish Balay   PetscFunctionBegin;
84426fbe8dcSKarl Rupp   if (baij->donotstash || mat->nooffprocentries) PetscFunctionReturn(0);
845bbb85fb3SSatish Balay 
8469566063dSJacob Faibussowitsch   PetscCall(MatStashScatterBegin_Private(mat,&mat->stash,mat->rmap->range));
8479566063dSJacob Faibussowitsch   PetscCall(MatStashScatterBegin_Private(mat,&mat->bstash,baij->rangebs));
8489566063dSJacob Faibussowitsch   PetscCall(MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs));
8499566063dSJacob Faibussowitsch   PetscCall(PetscInfo(mat,"Stash has %" PetscInt_FMT " entries,uses %" PetscInt_FMT " mallocs.\n",nstash,reallocs));
8509566063dSJacob Faibussowitsch   PetscCall(MatStashGetInfo_Private(&mat->bstash,&nstash,&reallocs));
8519566063dSJacob Faibussowitsch   PetscCall(PetscInfo(mat,"Block-Stash has %" PetscInt_FMT " entries, uses %" PetscInt_FMT " mallocs.\n",nstash,reallocs));
852bbb85fb3SSatish Balay   PetscFunctionReturn(0);
853bbb85fb3SSatish Balay }
854bbb85fb3SSatish Balay 
855dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_MPIBAIJ(Mat mat,MatAssemblyType mode)
856bbb85fb3SSatish Balay {
857bbb85fb3SSatish Balay   Mat_MPIBAIJ    *baij=(Mat_MPIBAIJ*)mat->data;
85891c97fd4SSatish Balay   Mat_SeqBAIJ    *a   =(Mat_SeqBAIJ*)baij->A->data;
859b24ad042SBarry Smith   PetscInt       i,j,rstart,ncols,flg,bs2=baij->bs2;
860e44c0bd4SBarry Smith   PetscInt       *row,*col;
861ace3abfcSBarry Smith   PetscBool      r1,r2,r3,other_disassembled;
8623eda8832SBarry Smith   MatScalar      *val;
863b24ad042SBarry Smith   PetscMPIInt    n;
864bbb85fb3SSatish Balay 
865bbb85fb3SSatish Balay   PetscFunctionBegin;
8665fd66863SKarl Rupp   /* do not use 'b=(Mat_SeqBAIJ*)baij->B->data' as B can be reset in disassembly */
8674cb17eb5SBarry Smith   if (!baij->donotstash && !mat->nooffprocentries) {
868a2d1c673SSatish Balay     while (1) {
8699566063dSJacob Faibussowitsch       PetscCall(MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg));
870a2d1c673SSatish Balay       if (!flg) break;
871a2d1c673SSatish Balay 
872bbb85fb3SSatish Balay       for (i=0; i<n;) {
873bbb85fb3SSatish Balay         /* Now identify the consecutive vals belonging to the same row */
87426fbe8dcSKarl Rupp         for (j=i,rstart=row[j]; j<n; j++) {
87526fbe8dcSKarl Rupp           if (row[j] != rstart) break;
87626fbe8dcSKarl Rupp         }
877bbb85fb3SSatish Balay         if (j < n) ncols = j-i;
878bbb85fb3SSatish Balay         else       ncols = n-i;
879bbb85fb3SSatish Balay         /* Now assemble all these values with a single function call */
8809566063dSJacob Faibussowitsch         PetscCall(MatSetValues_MPIBAIJ(mat,1,row+i,ncols,col+i,val+i,mat->insertmode));
881bbb85fb3SSatish Balay         i    = j;
882bbb85fb3SSatish Balay       }
883bbb85fb3SSatish Balay     }
8849566063dSJacob Faibussowitsch     PetscCall(MatStashScatterEnd_Private(&mat->stash));
885a2d1c673SSatish Balay     /* Now process the block-stash. Since the values are stashed column-oriented,
886a2d1c673SSatish Balay        set the roworiented flag to column oriented, and after MatSetValues()
887a2d1c673SSatish Balay        restore the original flags */
888a2d1c673SSatish Balay     r1 = baij->roworiented;
889a2d1c673SSatish Balay     r2 = a->roworiented;
89091c97fd4SSatish Balay     r3 = ((Mat_SeqBAIJ*)baij->B->data)->roworiented;
89126fbe8dcSKarl Rupp 
8927c922b88SBarry Smith     baij->roworiented = PETSC_FALSE;
8937c922b88SBarry Smith     a->roworiented    = PETSC_FALSE;
89426fbe8dcSKarl Rupp 
89591c97fd4SSatish Balay     (((Mat_SeqBAIJ*)baij->B->data))->roworiented = PETSC_FALSE; /* b->roworiented */
896a2d1c673SSatish Balay     while (1) {
8979566063dSJacob Faibussowitsch       PetscCall(MatStashScatterGetMesg_Private(&mat->bstash,&n,&row,&col,&val,&flg));
898a2d1c673SSatish Balay       if (!flg) break;
899a2d1c673SSatish Balay 
900a2d1c673SSatish Balay       for (i=0; i<n;) {
901a2d1c673SSatish Balay         /* Now identify the consecutive vals belonging to the same row */
90226fbe8dcSKarl Rupp         for (j=i,rstart=row[j]; j<n; j++) {
90326fbe8dcSKarl Rupp           if (row[j] != rstart) break;
90426fbe8dcSKarl Rupp         }
905a2d1c673SSatish Balay         if (j < n) ncols = j-i;
906a2d1c673SSatish Balay         else       ncols = n-i;
9079566063dSJacob Faibussowitsch         PetscCall(MatSetValuesBlocked_MPIBAIJ(mat,1,row+i,ncols,col+i,val+i*bs2,mat->insertmode));
908a2d1c673SSatish Balay         i    = j;
909a2d1c673SSatish Balay       }
910a2d1c673SSatish Balay     }
9119566063dSJacob Faibussowitsch     PetscCall(MatStashScatterEnd_Private(&mat->bstash));
91226fbe8dcSKarl Rupp 
913a2d1c673SSatish Balay     baij->roworiented = r1;
914a2d1c673SSatish Balay     a->roworiented    = r2;
91526fbe8dcSKarl Rupp 
91691c97fd4SSatish Balay     ((Mat_SeqBAIJ*)baij->B->data)->roworiented = r3; /* b->roworiented */
917bbb85fb3SSatish Balay   }
918bbb85fb3SSatish Balay 
9199566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(baij->A,mode));
9209566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(baij->A,mode));
921bbb85fb3SSatish Balay 
922bbb85fb3SSatish Balay   /* determine if any processor has disassembled, if so we must
9236aad120cSJose E. Roman      also disassemble ourselves, in order that we may reassemble. */
924bbb85fb3SSatish Balay   /*
925bbb85fb3SSatish Balay      if nonzero structure of submatrix B cannot change then we know that
926bbb85fb3SSatish Balay      no processor disassembled thus we can skip this stuff
927bbb85fb3SSatish Balay   */
928bbb85fb3SSatish Balay   if (!((Mat_SeqBAIJ*)baij->B->data)->nonew) {
929*5f9db2b2SJunchao Zhang     PetscCall(MPIU_Allreduce(&mat->was_assembled,&other_disassembled,1,MPIU_BOOL,MPI_LAND,PetscObjectComm((PetscObject)mat)));
930bbb85fb3SSatish Balay     if (mat->was_assembled && !other_disassembled) {
9319566063dSJacob Faibussowitsch       PetscCall(MatDisAssemble_MPIBAIJ(mat));
932bbb85fb3SSatish Balay     }
933bbb85fb3SSatish Balay   }
934bbb85fb3SSatish Balay 
935bbb85fb3SSatish Balay   if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) {
9369566063dSJacob Faibussowitsch     PetscCall(MatSetUpMultiply_MPIBAIJ(mat));
937bbb85fb3SSatish Balay   }
9389566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(baij->B,mode));
9399566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(baij->B,mode));
940bbb85fb3SSatish Balay 
9416cf91177SBarry Smith #if defined(PETSC_USE_INFO)
942bbb85fb3SSatish Balay   if (baij->ht && mode== MAT_FINAL_ASSEMBLY) {
9439566063dSJacob Faibussowitsch     PetscCall(PetscInfo(mat,"Average Hash Table Search in MatSetValues = %5.2f\n",(double)((PetscReal)baij->ht_total_ct)/baij->ht_insert_ct));
94426fbe8dcSKarl Rupp 
945bbb85fb3SSatish Balay     baij->ht_total_ct  = 0;
946bbb85fb3SSatish Balay     baij->ht_insert_ct = 0;
947bbb85fb3SSatish Balay   }
948bbb85fb3SSatish Balay #endif
949bbb85fb3SSatish Balay   if (baij->ht_flag && !baij->ht && mode == MAT_FINAL_ASSEMBLY) {
9509566063dSJacob Faibussowitsch     PetscCall(MatCreateHashTable_MPIBAIJ_Private(mat,baij->ht_fact));
95126fbe8dcSKarl Rupp 
952bbb85fb3SSatish Balay     mat->ops->setvalues        = MatSetValues_MPIBAIJ_HT;
953bbb85fb3SSatish Balay     mat->ops->setvaluesblocked = MatSetValuesBlocked_MPIBAIJ_HT;
954bbb85fb3SSatish Balay   }
955bbb85fb3SSatish Balay 
9569566063dSJacob Faibussowitsch   PetscCall(PetscFree2(baij->rowvalues,baij->rowindices));
95726fbe8dcSKarl Rupp 
958f4259b30SLisandro Dalcin   baij->rowvalues = NULL;
9594f9cfa9eSBarry Smith 
9604f9cfa9eSBarry Smith   /* if no new nonzero locations are allowed in matrix then only set the matrix state the first time through */
9614f9cfa9eSBarry Smith   if ((!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) || !((Mat_SeqBAIJ*)(baij->A->data))->nonew) {
962e56f5c9eSBarry Smith     PetscObjectState state = baij->A->nonzerostate + baij->B->nonzerostate;
9631c2dc1cbSBarry Smith     PetscCall(MPIU_Allreduce(&state,&mat->nonzerostate,1,MPIU_INT64,MPI_SUM,PetscObjectComm((PetscObject)mat)));
964e56f5c9eSBarry Smith   }
965bbb85fb3SSatish Balay   PetscFunctionReturn(0);
966bbb85fb3SSatish Balay }
96757b952d6SSatish Balay 
9687da1fb6eSBarry Smith extern PetscErrorCode MatView_SeqBAIJ(Mat,PetscViewer);
9699804daf3SBarry Smith #include <petscdraw.h>
9706849ba73SBarry Smith static PetscErrorCode MatView_MPIBAIJ_ASCIIorDraworSocket(Mat mat,PetscViewer viewer)
97157b952d6SSatish Balay {
97257b952d6SSatish Balay   Mat_MPIBAIJ       *baij = (Mat_MPIBAIJ*)mat->data;
9737da1fb6eSBarry Smith   PetscMPIInt       rank = baij->rank;
974d0f46423SBarry Smith   PetscInt          bs   = mat->rmap->bs;
975ace3abfcSBarry Smith   PetscBool         iascii,isdraw;
976b0a32e0cSBarry Smith   PetscViewer       sviewer;
977f3ef73ceSBarry Smith   PetscViewerFormat format;
97857b952d6SSatish Balay 
979d64ed03dSBarry Smith   PetscFunctionBegin;
9809566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii));
9819566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw));
98232077d6dSBarry Smith   if (iascii) {
9839566063dSJacob Faibussowitsch     PetscCall(PetscViewerGetFormat(viewer,&format));
984456192e2SBarry Smith     if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) {
9854e220ebcSLois Curfman McInnes       MatInfo info;
9869566063dSJacob Faibussowitsch       PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)mat),&rank));
9879566063dSJacob Faibussowitsch       PetscCall(MatGetInfo(mat,MAT_LOCAL,&info));
9889566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPushSynchronized(viewer));
9899566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Local rows %" PetscInt_FMT " nz %" PetscInt_FMT " nz alloced %" PetscInt_FMT " bs %" PetscInt_FMT " mem %g\n",
9905f80ce2aSJacob Faibussowitsch                                                  rank,mat->rmap->n,(PetscInt)info.nz_used,(PetscInt)info.nz_allocated,mat->rmap->bs,(double)info.memory));
9919566063dSJacob Faibussowitsch       PetscCall(MatGetInfo(baij->A,MAT_LOCAL,&info));
9929566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIISynchronizedPrintf(viewer,"[%d] on-diagonal part: nz %" PetscInt_FMT " \n",rank,(PetscInt)info.nz_used));
9939566063dSJacob Faibussowitsch       PetscCall(MatGetInfo(baij->B,MAT_LOCAL,&info));
9949566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIISynchronizedPrintf(viewer,"[%d] off-diagonal part: nz %" PetscInt_FMT " \n",rank,(PetscInt)info.nz_used));
9959566063dSJacob Faibussowitsch       PetscCall(PetscViewerFlush(viewer));
9969566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPopSynchronized(viewer));
9979566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPrintf(viewer,"Information on VecScatter used in matrix-vector product: \n"));
9989566063dSJacob Faibussowitsch       PetscCall(VecScatterView(baij->Mvctx,viewer));
9993a40ed3dSBarry Smith       PetscFunctionReturn(0);
1000fb9695e5SSatish Balay     } else if (format == PETSC_VIEWER_ASCII_INFO) {
10019566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPrintf(viewer,"  block size is %" PetscInt_FMT "\n",bs));
10023a40ed3dSBarry Smith       PetscFunctionReturn(0);
100304929863SHong Zhang     } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) {
100404929863SHong Zhang       PetscFunctionReturn(0);
100557b952d6SSatish Balay     }
100657b952d6SSatish Balay   }
100757b952d6SSatish Balay 
10080f5bd95cSBarry Smith   if (isdraw) {
1009b0a32e0cSBarry Smith     PetscDraw draw;
1010ace3abfcSBarry Smith     PetscBool isnull;
10119566063dSJacob Faibussowitsch     PetscCall(PetscViewerDrawGetDraw(viewer,0,&draw));
10129566063dSJacob Faibussowitsch     PetscCall(PetscDrawIsNull(draw,&isnull));
101345f3bb6eSLisandro Dalcin     if (isnull) PetscFunctionReturn(0);
101457b952d6SSatish Balay   }
101557b952d6SSatish Balay 
10167da1fb6eSBarry Smith   {
101757b952d6SSatish Balay     /* assemble the entire matrix onto first processor. */
101857b952d6SSatish Balay     Mat         A;
101957b952d6SSatish Balay     Mat_SeqBAIJ *Aloc;
1020d0f46423SBarry Smith     PetscInt    M = mat->rmap->N,N = mat->cmap->N,*ai,*aj,col,i,j,k,*rvals,mbs = baij->mbs;
10213eda8832SBarry Smith     MatScalar   *a;
10223e219373SBarry Smith     const char  *matname;
102357b952d6SSatish Balay 
1024f204ca49SKris Buschelman     /* Here we are creating a temporary matrix, so will assume MPIBAIJ is acceptable */
1025f204ca49SKris Buschelman     /* Perhaps this should be the type of mat? */
10269566063dSJacob Faibussowitsch     PetscCall(MatCreate(PetscObjectComm((PetscObject)mat),&A));
1027dd400576SPatrick Sanan     if (rank == 0) {
10289566063dSJacob Faibussowitsch       PetscCall(MatSetSizes(A,M,N,M,N));
1029d64ed03dSBarry Smith     } else {
10309566063dSJacob Faibussowitsch       PetscCall(MatSetSizes(A,0,0,M,N));
103157b952d6SSatish Balay     }
10329566063dSJacob Faibussowitsch     PetscCall(MatSetType(A,MATMPIBAIJ));
10339566063dSJacob Faibussowitsch     PetscCall(MatMPIBAIJSetPreallocation(A,mat->rmap->bs,0,NULL,0,NULL));
10349566063dSJacob Faibussowitsch     PetscCall(MatSetOption(A,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_FALSE));
10359566063dSJacob Faibussowitsch     PetscCall(PetscLogObjectParent((PetscObject)mat,(PetscObject)A));
103657b952d6SSatish Balay 
103757b952d6SSatish Balay     /* copy over the A part */
103857b952d6SSatish Balay     Aloc = (Mat_SeqBAIJ*)baij->A->data;
103957b952d6SSatish Balay     ai   = Aloc->i; aj = Aloc->j; a = Aloc->a;
10409566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(bs,&rvals));
104157b952d6SSatish Balay 
104257b952d6SSatish Balay     for (i=0; i<mbs; i++) {
1043899cda47SBarry Smith       rvals[0] = bs*(baij->rstartbs + i);
104426fbe8dcSKarl Rupp       for (j=1; j<bs; j++) rvals[j] = rvals[j-1] + 1;
104557b952d6SSatish Balay       for (j=ai[i]; j<ai[i+1]; j++) {
1046899cda47SBarry Smith         col = (baij->cstartbs+aj[j])*bs;
104757b952d6SSatish Balay         for (k=0; k<bs; k++) {
10489566063dSJacob Faibussowitsch           PetscCall(MatSetValues_MPIBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES));
1049cee3aa6bSSatish Balay           col++; a += bs;
105057b952d6SSatish Balay         }
105157b952d6SSatish Balay       }
105257b952d6SSatish Balay     }
105357b952d6SSatish Balay     /* copy over the B part */
105457b952d6SSatish Balay     Aloc = (Mat_SeqBAIJ*)baij->B->data;
105557b952d6SSatish Balay     ai   = Aloc->i; aj = Aloc->j; a = Aloc->a;
105657b952d6SSatish Balay     for (i=0; i<mbs; i++) {
1057899cda47SBarry Smith       rvals[0] = bs*(baij->rstartbs + i);
105826fbe8dcSKarl Rupp       for (j=1; j<bs; j++) rvals[j] = rvals[j-1] + 1;
105957b952d6SSatish Balay       for (j=ai[i]; j<ai[i+1]; j++) {
106057b952d6SSatish Balay         col = baij->garray[aj[j]]*bs;
106157b952d6SSatish Balay         for (k=0; k<bs; k++) {
10629566063dSJacob Faibussowitsch           PetscCall(MatSetValues_MPIBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES));
1063cee3aa6bSSatish Balay           col++; a += bs;
106457b952d6SSatish Balay         }
106557b952d6SSatish Balay       }
106657b952d6SSatish Balay     }
10679566063dSJacob Faibussowitsch     PetscCall(PetscFree(rvals));
10689566063dSJacob Faibussowitsch     PetscCall(MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY));
10699566063dSJacob Faibussowitsch     PetscCall(MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY));
107055843e3eSBarry Smith     /*
107155843e3eSBarry Smith        Everyone has to call to draw the matrix since the graphics waits are
1072b0a32e0cSBarry Smith        synchronized across all processors that share the PetscDraw object
107355843e3eSBarry Smith     */
10749566063dSJacob Faibussowitsch     PetscCall(PetscViewerGetSubViewer(viewer,PETSC_COMM_SELF,&sviewer));
10759566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetName((PetscObject)mat,&matname));
1076dd400576SPatrick Sanan     if (rank == 0) {
10779566063dSJacob Faibussowitsch       PetscCall(PetscObjectSetName((PetscObject)((Mat_MPIBAIJ*)(A->data))->A,matname));
10789566063dSJacob Faibussowitsch       PetscCall(MatView_SeqBAIJ(((Mat_MPIBAIJ*)(A->data))->A,sviewer));
107957b952d6SSatish Balay     }
10809566063dSJacob Faibussowitsch     PetscCall(PetscViewerRestoreSubViewer(viewer,PETSC_COMM_SELF,&sviewer));
10819566063dSJacob Faibussowitsch     PetscCall(PetscViewerFlush(viewer));
10829566063dSJacob Faibussowitsch     PetscCall(MatDestroy(&A));
108357b952d6SSatish Balay   }
10843a40ed3dSBarry Smith   PetscFunctionReturn(0);
108557b952d6SSatish Balay }
108657b952d6SSatish Balay 
1087618cc2edSLisandro Dalcin /* Used for both MPIBAIJ and MPISBAIJ matrices */
1088b51a4376SLisandro Dalcin PetscErrorCode MatView_MPIBAIJ_Binary(Mat mat,PetscViewer viewer)
1089660746e0SBarry Smith {
1090b51a4376SLisandro Dalcin   Mat_MPIBAIJ    *aij = (Mat_MPIBAIJ*)mat->data;
1091b51a4376SLisandro Dalcin   Mat_SeqBAIJ    *A   = (Mat_SeqBAIJ*)aij->A->data;
1092b51a4376SLisandro Dalcin   Mat_SeqBAIJ    *B   = (Mat_SeqBAIJ*)aij->B->data;
1093b51a4376SLisandro Dalcin   const PetscInt *garray = aij->garray;
1094b51a4376SLisandro Dalcin   PetscInt       header[4],M,N,m,rs,cs,bs,nz,cnt,i,j,ja,jb,k,l;
1095b51a4376SLisandro Dalcin   PetscInt       *rowlens,*colidxs;
1096b51a4376SLisandro Dalcin   PetscScalar    *matvals;
1097660746e0SBarry Smith 
1098660746e0SBarry Smith   PetscFunctionBegin;
10999566063dSJacob Faibussowitsch   PetscCall(PetscViewerSetUp(viewer));
1100b51a4376SLisandro Dalcin 
1101b51a4376SLisandro Dalcin   M  = mat->rmap->N;
1102b51a4376SLisandro Dalcin   N  = mat->cmap->N;
1103b51a4376SLisandro Dalcin   m  = mat->rmap->n;
1104b51a4376SLisandro Dalcin   rs = mat->rmap->rstart;
1105b51a4376SLisandro Dalcin   cs = mat->cmap->rstart;
1106b51a4376SLisandro Dalcin   bs = mat->rmap->bs;
1107b51a4376SLisandro Dalcin   nz = bs*bs*(A->nz + B->nz);
1108b51a4376SLisandro Dalcin 
1109b51a4376SLisandro Dalcin   /* write matrix header */
1110660746e0SBarry Smith   header[0] = MAT_FILE_CLASSID;
1111b51a4376SLisandro Dalcin   header[1] = M; header[2] = N; header[3] = nz;
11129566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Reduce(&nz,&header[3],1,MPIU_INT,MPI_SUM,0,PetscObjectComm((PetscObject)mat)));
11139566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryWrite(viewer,header,4,PETSC_INT));
1114660746e0SBarry Smith 
1115b51a4376SLisandro Dalcin   /* fill in and store row lengths */
11169566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(m,&rowlens));
1117b51a4376SLisandro Dalcin   for (cnt=0, i=0; i<A->mbs; i++)
1118b51a4376SLisandro Dalcin     for (j=0; j<bs; j++)
1119b51a4376SLisandro Dalcin       rowlens[cnt++] = bs*(A->i[i+1] - A->i[i] + B->i[i+1] - B->i[i]);
11209566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryWriteAll(viewer,rowlens,m,rs,M,PETSC_INT));
11219566063dSJacob Faibussowitsch   PetscCall(PetscFree(rowlens));
1122660746e0SBarry Smith 
1123b51a4376SLisandro Dalcin   /* fill in and store column indices */
11249566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(nz,&colidxs));
1125b51a4376SLisandro Dalcin   for (cnt=0, i=0; i<A->mbs; i++) {
1126b51a4376SLisandro Dalcin     for (k=0; k<bs; k++) {
1127b51a4376SLisandro Dalcin       for (jb=B->i[i]; jb<B->i[i+1]; jb++) {
1128b51a4376SLisandro Dalcin         if (garray[B->j[jb]] > cs/bs) break;
1129b51a4376SLisandro Dalcin         for (l=0; l<bs; l++)
1130b51a4376SLisandro Dalcin           colidxs[cnt++] = bs*garray[B->j[jb]] + l;
1131660746e0SBarry Smith       }
1132b51a4376SLisandro Dalcin       for (ja=A->i[i]; ja<A->i[i+1]; ja++)
1133b51a4376SLisandro Dalcin         for (l=0; l<bs; l++)
1134b51a4376SLisandro Dalcin           colidxs[cnt++] = bs*A->j[ja] + l + cs;
1135b51a4376SLisandro Dalcin       for (; jb<B->i[i+1]; jb++)
1136b51a4376SLisandro Dalcin         for (l=0; l<bs; l++)
1137b51a4376SLisandro Dalcin           colidxs[cnt++] = bs*garray[B->j[jb]] + l;
1138660746e0SBarry Smith     }
1139660746e0SBarry Smith   }
11405f80ce2aSJacob Faibussowitsch   PetscCheck(cnt == nz,PETSC_COMM_SELF,PETSC_ERR_LIB,"Internal PETSc error: cnt = %" PetscInt_FMT " nz = %" PetscInt_FMT,cnt,nz);
11419566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryWriteAll(viewer,colidxs,nz,PETSC_DECIDE,PETSC_DECIDE,PETSC_INT));
11429566063dSJacob Faibussowitsch   PetscCall(PetscFree(colidxs));
1143660746e0SBarry Smith 
1144b51a4376SLisandro Dalcin   /* fill in and store nonzero values */
11459566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(nz,&matvals));
1146b51a4376SLisandro Dalcin   for (cnt=0, i=0; i<A->mbs; i++) {
1147b51a4376SLisandro Dalcin     for (k=0; k<bs; k++) {
1148b51a4376SLisandro Dalcin       for (jb=B->i[i]; jb<B->i[i+1]; jb++) {
1149b51a4376SLisandro Dalcin         if (garray[B->j[jb]] > cs/bs) break;
1150b51a4376SLisandro Dalcin         for (l=0; l<bs; l++)
1151b51a4376SLisandro Dalcin           matvals[cnt++] = B->a[bs*(bs*jb + l) + k];
1152660746e0SBarry Smith       }
1153b51a4376SLisandro Dalcin       for (ja=A->i[i]; ja<A->i[i+1]; ja++)
1154b51a4376SLisandro Dalcin         for (l=0; l<bs; l++)
1155b51a4376SLisandro Dalcin           matvals[cnt++] = A->a[bs*(bs*ja + l) + k];
1156b51a4376SLisandro Dalcin       for (; jb<B->i[i+1]; jb++)
1157b51a4376SLisandro Dalcin         for (l=0; l<bs; l++)
1158d21b9a37SPierre Jolivet           matvals[cnt++] = B->a[bs*(bs*jb + l) + k];
1159660746e0SBarry Smith     }
1160b51a4376SLisandro Dalcin   }
11619566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryWriteAll(viewer,matvals,nz,PETSC_DECIDE,PETSC_DECIDE,PETSC_SCALAR));
11629566063dSJacob Faibussowitsch   PetscCall(PetscFree(matvals));
1163660746e0SBarry Smith 
1164b51a4376SLisandro Dalcin   /* write block size option to the viewer's .info file */
11659566063dSJacob Faibussowitsch   PetscCall(MatView_Binary_BlockSizes(mat,viewer));
1166660746e0SBarry Smith   PetscFunctionReturn(0);
1167660746e0SBarry Smith }
1168660746e0SBarry Smith 
1169dfbe8321SBarry Smith PetscErrorCode MatView_MPIBAIJ(Mat mat,PetscViewer viewer)
117057b952d6SSatish Balay {
1171ace3abfcSBarry Smith   PetscBool      iascii,isdraw,issocket,isbinary;
117257b952d6SSatish Balay 
1173d64ed03dSBarry Smith   PetscFunctionBegin;
11749566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii));
11759566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw));
11769566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERSOCKET,&issocket));
11779566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary));
1178660746e0SBarry Smith   if (iascii || isdraw || issocket) {
11799566063dSJacob Faibussowitsch     PetscCall(MatView_MPIBAIJ_ASCIIorDraworSocket(mat,viewer));
11801baa6e33SBarry Smith   } else if (isbinary) PetscCall(MatView_MPIBAIJ_Binary(mat,viewer));
11813a40ed3dSBarry Smith   PetscFunctionReturn(0);
118257b952d6SSatish Balay }
118357b952d6SSatish Balay 
1184dfbe8321SBarry Smith PetscErrorCode MatDestroy_MPIBAIJ(Mat mat)
118579bdfe76SSatish Balay {
118679bdfe76SSatish Balay   Mat_MPIBAIJ    *baij = (Mat_MPIBAIJ*)mat->data;
118779bdfe76SSatish Balay 
1188d64ed03dSBarry Smith   PetscFunctionBegin;
1189aa482453SBarry Smith #if defined(PETSC_USE_LOG)
1190c0aa6a63SJacob Faibussowitsch   PetscLogObjectState((PetscObject)mat,"Rows=%" PetscInt_FMT ",Cols=%" PetscInt_FMT,mat->rmap->N,mat->cmap->N);
119179bdfe76SSatish Balay #endif
11929566063dSJacob Faibussowitsch   PetscCall(MatStashDestroy_Private(&mat->stash));
11939566063dSJacob Faibussowitsch   PetscCall(MatStashDestroy_Private(&mat->bstash));
11949566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&baij->A));
11959566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&baij->B));
1196aa482453SBarry Smith #if defined(PETSC_USE_CTABLE)
11979566063dSJacob Faibussowitsch   PetscCall(PetscTableDestroy(&baij->colmap));
119848e59246SSatish Balay #else
11999566063dSJacob Faibussowitsch   PetscCall(PetscFree(baij->colmap));
120048e59246SSatish Balay #endif
12019566063dSJacob Faibussowitsch   PetscCall(PetscFree(baij->garray));
12029566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&baij->lvec));
12039566063dSJacob Faibussowitsch   PetscCall(VecScatterDestroy(&baij->Mvctx));
12049566063dSJacob Faibussowitsch   PetscCall(PetscFree2(baij->rowvalues,baij->rowindices));
12059566063dSJacob Faibussowitsch   PetscCall(PetscFree(baij->barray));
12069566063dSJacob Faibussowitsch   PetscCall(PetscFree2(baij->hd,baij->ht));
12079566063dSJacob Faibussowitsch   PetscCall(PetscFree(baij->rangebs));
12089566063dSJacob Faibussowitsch   PetscCall(PetscFree(mat->data));
1209901853e0SKris Buschelman 
12109566063dSJacob Faibussowitsch   PetscCall(PetscObjectChangeTypeName((PetscObject)mat,NULL));
12119566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatStoreValues_C",NULL));
12129566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatRetrieveValues_C",NULL));
12139566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatMPIBAIJSetPreallocation_C",NULL));
12149566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatMPIBAIJSetPreallocationCSR_C",NULL));
12159566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDiagonalScaleLocal_C",NULL));
12169566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatSetHashTableFactor_C",NULL));
12179566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpibaij_mpisbaij_C",NULL));
12182e956fe4SStefano Zampini   PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpibaij_mpiadj_C",NULL));
12192e956fe4SStefano Zampini   PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpibaij_mpiaij_C",NULL));
12207ea3e4caSstefano_zampini #if defined(PETSC_HAVE_HYPRE)
12219566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpibaij_hypre_C",NULL));
12227ea3e4caSstefano_zampini #endif
12239566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpibaij_is_C",NULL));
12243a40ed3dSBarry Smith   PetscFunctionReturn(0);
122579bdfe76SSatish Balay }
122679bdfe76SSatish Balay 
1227dfbe8321SBarry Smith PetscErrorCode MatMult_MPIBAIJ(Mat A,Vec xx,Vec yy)
1228cee3aa6bSSatish Balay {
1229cee3aa6bSSatish Balay   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)A->data;
1230b24ad042SBarry Smith   PetscInt       nt;
1231cee3aa6bSSatish Balay 
1232d64ed03dSBarry Smith   PetscFunctionBegin;
12339566063dSJacob Faibussowitsch   PetscCall(VecGetLocalSize(xx,&nt));
12345f80ce2aSJacob Faibussowitsch   PetscCheck(nt == A->cmap->n,PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx");
12359566063dSJacob Faibussowitsch   PetscCall(VecGetLocalSize(yy,&nt));
12365f80ce2aSJacob Faibussowitsch   PetscCheck(nt == A->rmap->n,PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible parition of A and yy");
12379566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD));
12389566063dSJacob Faibussowitsch   PetscCall((*a->A->ops->mult)(a->A,xx,yy));
12399566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD));
12409566063dSJacob Faibussowitsch   PetscCall((*a->B->ops->multadd)(a->B,a->lvec,yy,yy));
12413a40ed3dSBarry Smith   PetscFunctionReturn(0);
1242cee3aa6bSSatish Balay }
1243cee3aa6bSSatish Balay 
1244dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPIBAIJ(Mat A,Vec xx,Vec yy,Vec zz)
1245cee3aa6bSSatish Balay {
1246cee3aa6bSSatish Balay   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)A->data;
1247d64ed03dSBarry Smith 
1248d64ed03dSBarry Smith   PetscFunctionBegin;
12499566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD));
12509566063dSJacob Faibussowitsch   PetscCall((*a->A->ops->multadd)(a->A,xx,yy,zz));
12519566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD));
12529566063dSJacob Faibussowitsch   PetscCall((*a->B->ops->multadd)(a->B,a->lvec,zz,zz));
12533a40ed3dSBarry Smith   PetscFunctionReturn(0);
1254cee3aa6bSSatish Balay }
1255cee3aa6bSSatish Balay 
1256dfbe8321SBarry Smith PetscErrorCode MatMultTranspose_MPIBAIJ(Mat A,Vec xx,Vec yy)
1257cee3aa6bSSatish Balay {
1258cee3aa6bSSatish Balay   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)A->data;
1259cee3aa6bSSatish Balay 
1260d64ed03dSBarry Smith   PetscFunctionBegin;
1261cee3aa6bSSatish Balay   /* do nondiagonal part */
12629566063dSJacob Faibussowitsch   PetscCall((*a->B->ops->multtranspose)(a->B,xx,a->lvec));
1263cee3aa6bSSatish Balay   /* do local part */
12649566063dSJacob Faibussowitsch   PetscCall((*a->A->ops->multtranspose)(a->A,xx,yy));
1265e4a140f6SJunchao Zhang   /* add partial results together */
12669566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE));
12679566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE));
12683a40ed3dSBarry Smith   PetscFunctionReturn(0);
1269cee3aa6bSSatish Balay }
1270cee3aa6bSSatish Balay 
1271dfbe8321SBarry Smith PetscErrorCode MatMultTransposeAdd_MPIBAIJ(Mat A,Vec xx,Vec yy,Vec zz)
1272cee3aa6bSSatish Balay {
1273cee3aa6bSSatish Balay   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)A->data;
1274cee3aa6bSSatish Balay 
1275d64ed03dSBarry Smith   PetscFunctionBegin;
1276cee3aa6bSSatish Balay   /* do nondiagonal part */
12779566063dSJacob Faibussowitsch   PetscCall((*a->B->ops->multtranspose)(a->B,xx,a->lvec));
1278cee3aa6bSSatish Balay   /* do local part */
12799566063dSJacob Faibussowitsch   PetscCall((*a->A->ops->multtransposeadd)(a->A,xx,yy,zz));
1280e4a140f6SJunchao Zhang   /* add partial results together */
12819566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE));
12829566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE));
12833a40ed3dSBarry Smith   PetscFunctionReturn(0);
1284cee3aa6bSSatish Balay }
1285cee3aa6bSSatish Balay 
1286cee3aa6bSSatish Balay /*
1287cee3aa6bSSatish Balay   This only works correctly for square matrices where the subblock A->A is the
1288cee3aa6bSSatish Balay    diagonal block
1289cee3aa6bSSatish Balay */
1290dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_MPIBAIJ(Mat A,Vec v)
1291cee3aa6bSSatish Balay {
1292d64ed03dSBarry Smith   PetscFunctionBegin;
12935f80ce2aSJacob Faibussowitsch   PetscCheck(A->rmap->N == A->cmap->N,PETSC_COMM_SELF,PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block");
12949566063dSJacob Faibussowitsch   PetscCall(MatGetDiagonal(((Mat_MPIBAIJ*)A->data)->A,v));
12953a40ed3dSBarry Smith   PetscFunctionReturn(0);
1296cee3aa6bSSatish Balay }
1297cee3aa6bSSatish Balay 
1298f4df32b1SMatthew Knepley PetscErrorCode MatScale_MPIBAIJ(Mat A,PetscScalar aa)
1299cee3aa6bSSatish Balay {
1300cee3aa6bSSatish Balay   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)A->data;
1301d64ed03dSBarry Smith 
1302d64ed03dSBarry Smith   PetscFunctionBegin;
13039566063dSJacob Faibussowitsch   PetscCall(MatScale(a->A,aa));
13049566063dSJacob Faibussowitsch   PetscCall(MatScale(a->B,aa));
13053a40ed3dSBarry Smith   PetscFunctionReturn(0);
1306cee3aa6bSSatish Balay }
1307026e39d0SSatish Balay 
1308b24ad042SBarry Smith PetscErrorCode MatGetRow_MPIBAIJ(Mat matin,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v)
1309acdf5bf4SSatish Balay {
1310acdf5bf4SSatish Balay   Mat_MPIBAIJ *mat = (Mat_MPIBAIJ*)matin->data;
131187828ca2SBarry Smith   PetscScalar *vworkA,*vworkB,**pvA,**pvB,*v_p;
1312d0f46423SBarry Smith   PetscInt    bs = matin->rmap->bs,bs2 = mat->bs2,i,*cworkA,*cworkB,**pcA,**pcB;
1313d0f46423SBarry Smith   PetscInt    nztot,nzA,nzB,lrow,brstart = matin->rmap->rstart,brend = matin->rmap->rend;
1314899cda47SBarry Smith   PetscInt    *cmap,*idx_p,cstart = mat->cstartbs;
1315acdf5bf4SSatish Balay 
1316d64ed03dSBarry Smith   PetscFunctionBegin;
13175f80ce2aSJacob Faibussowitsch   PetscCheck(row >= brstart && row < brend,PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local rows");
13185f80ce2aSJacob Faibussowitsch   PetscCheck(!mat->getrowactive,PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Already active");
1319acdf5bf4SSatish Balay   mat->getrowactive = PETSC_TRUE;
1320acdf5bf4SSatish Balay 
1321acdf5bf4SSatish Balay   if (!mat->rowvalues && (idx || v)) {
1322acdf5bf4SSatish Balay     /*
1323acdf5bf4SSatish Balay         allocate enough space to hold information from the longest row.
1324acdf5bf4SSatish Balay     */
1325acdf5bf4SSatish Balay     Mat_SeqBAIJ *Aa = (Mat_SeqBAIJ*)mat->A->data,*Ba = (Mat_SeqBAIJ*)mat->B->data;
1326b24ad042SBarry Smith     PetscInt    max = 1,mbs = mat->mbs,tmp;
1327bd16c2feSSatish Balay     for (i=0; i<mbs; i++) {
1328acdf5bf4SSatish Balay       tmp = Aa->i[i+1] - Aa->i[i] + Ba->i[i+1] - Ba->i[i];
132926fbe8dcSKarl Rupp       if (max < tmp) max = tmp;
1330acdf5bf4SSatish Balay     }
13319566063dSJacob Faibussowitsch     PetscCall(PetscMalloc2(max*bs2,&mat->rowvalues,max*bs2,&mat->rowindices));
1332acdf5bf4SSatish Balay   }
1333d9d09a02SSatish Balay   lrow = row - brstart;
1334acdf5bf4SSatish Balay 
1335acdf5bf4SSatish Balay   pvA = &vworkA; pcA = &cworkA; pvB = &vworkB; pcB = &cworkB;
1336f4259b30SLisandro Dalcin   if (!v)   {pvA = NULL; pvB = NULL;}
1337f4259b30SLisandro Dalcin   if (!idx) {pcA = NULL; if (!v) pcB = NULL;}
13389566063dSJacob Faibussowitsch   PetscCall((*mat->A->ops->getrow)(mat->A,lrow,&nzA,pcA,pvA));
13399566063dSJacob Faibussowitsch   PetscCall((*mat->B->ops->getrow)(mat->B,lrow,&nzB,pcB,pvB));
1340acdf5bf4SSatish Balay   nztot = nzA + nzB;
1341acdf5bf4SSatish Balay 
1342acdf5bf4SSatish Balay   cmap = mat->garray;
1343acdf5bf4SSatish Balay   if (v  || idx) {
1344acdf5bf4SSatish Balay     if (nztot) {
1345acdf5bf4SSatish Balay       /* Sort by increasing column numbers, assuming A and B already sorted */
1346b24ad042SBarry Smith       PetscInt imark = -1;
1347acdf5bf4SSatish Balay       if (v) {
1348acdf5bf4SSatish Balay         *v = v_p = mat->rowvalues;
1349acdf5bf4SSatish Balay         for (i=0; i<nzB; i++) {
1350d9d09a02SSatish Balay           if (cmap[cworkB[i]/bs] < cstart) v_p[i] = vworkB[i];
1351acdf5bf4SSatish Balay           else break;
1352acdf5bf4SSatish Balay         }
1353acdf5bf4SSatish Balay         imark = i;
1354acdf5bf4SSatish Balay         for (i=0; i<nzA; i++)     v_p[imark+i] = vworkA[i];
1355acdf5bf4SSatish Balay         for (i=imark; i<nzB; i++) v_p[nzA+i]   = vworkB[i];
1356acdf5bf4SSatish Balay       }
1357acdf5bf4SSatish Balay       if (idx) {
1358acdf5bf4SSatish Balay         *idx = idx_p = mat->rowindices;
1359acdf5bf4SSatish Balay         if (imark > -1) {
1360acdf5bf4SSatish Balay           for (i=0; i<imark; i++) {
1361bd16c2feSSatish Balay             idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs;
1362acdf5bf4SSatish Balay           }
1363acdf5bf4SSatish Balay         } else {
1364acdf5bf4SSatish Balay           for (i=0; i<nzB; i++) {
136526fbe8dcSKarl Rupp             if (cmap[cworkB[i]/bs] < cstart) idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs;
1366acdf5bf4SSatish Balay             else break;
1367acdf5bf4SSatish Balay           }
1368acdf5bf4SSatish Balay           imark = i;
1369acdf5bf4SSatish Balay         }
1370d9d09a02SSatish Balay         for (i=0; i<nzA; i++)     idx_p[imark+i] = cstart*bs + cworkA[i];
1371d9d09a02SSatish Balay         for (i=imark; i<nzB; i++) idx_p[nzA+i]   = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ;
1372acdf5bf4SSatish Balay       }
1373d64ed03dSBarry Smith     } else {
1374f4259b30SLisandro Dalcin       if (idx) *idx = NULL;
1375f4259b30SLisandro Dalcin       if (v)   *v   = NULL;
1376d212a18eSSatish Balay     }
1377acdf5bf4SSatish Balay   }
1378acdf5bf4SSatish Balay   *nz  = nztot;
13799566063dSJacob Faibussowitsch   PetscCall((*mat->A->ops->restorerow)(mat->A,lrow,&nzA,pcA,pvA));
13809566063dSJacob Faibussowitsch   PetscCall((*mat->B->ops->restorerow)(mat->B,lrow,&nzB,pcB,pvB));
13813a40ed3dSBarry Smith   PetscFunctionReturn(0);
1382acdf5bf4SSatish Balay }
1383acdf5bf4SSatish Balay 
1384b24ad042SBarry Smith PetscErrorCode MatRestoreRow_MPIBAIJ(Mat mat,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v)
1385acdf5bf4SSatish Balay {
1386acdf5bf4SSatish Balay   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data;
1387d64ed03dSBarry Smith 
1388d64ed03dSBarry Smith   PetscFunctionBegin;
13895f80ce2aSJacob Faibussowitsch   PetscCheck(baij->getrowactive,PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"MatGetRow not called");
1390acdf5bf4SSatish Balay   baij->getrowactive = PETSC_FALSE;
13913a40ed3dSBarry Smith   PetscFunctionReturn(0);
1392acdf5bf4SSatish Balay }
1393acdf5bf4SSatish Balay 
1394dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_MPIBAIJ(Mat A)
139558667388SSatish Balay {
139658667388SSatish Balay   Mat_MPIBAIJ    *l = (Mat_MPIBAIJ*)A->data;
1397d64ed03dSBarry Smith 
1398d64ed03dSBarry Smith   PetscFunctionBegin;
13999566063dSJacob Faibussowitsch   PetscCall(MatZeroEntries(l->A));
14009566063dSJacob Faibussowitsch   PetscCall(MatZeroEntries(l->B));
14013a40ed3dSBarry Smith   PetscFunctionReturn(0);
140258667388SSatish Balay }
14030ac07820SSatish Balay 
1404dfbe8321SBarry Smith PetscErrorCode MatGetInfo_MPIBAIJ(Mat matin,MatInfoType flag,MatInfo *info)
14050ac07820SSatish Balay {
14064e220ebcSLois Curfman McInnes   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)matin->data;
14074e220ebcSLois Curfman McInnes   Mat            A  = a->A,B = a->B;
14083966268fSBarry Smith   PetscLogDouble isend[5],irecv[5];
14090ac07820SSatish Balay 
1410d64ed03dSBarry Smith   PetscFunctionBegin;
1411d0f46423SBarry Smith   info->block_size = (PetscReal)matin->rmap->bs;
141226fbe8dcSKarl Rupp 
14139566063dSJacob Faibussowitsch   PetscCall(MatGetInfo(A,MAT_LOCAL,info));
141426fbe8dcSKarl Rupp 
14150e4b21beSBarry Smith   isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded;
1416de87f314SBarry Smith   isend[3] = info->memory;  isend[4] = info->mallocs;
141726fbe8dcSKarl Rupp 
14189566063dSJacob Faibussowitsch   PetscCall(MatGetInfo(B,MAT_LOCAL,info));
141926fbe8dcSKarl Rupp 
14200e4b21beSBarry Smith   isend[0] += info->nz_used; isend[1] += info->nz_allocated; isend[2] += info->nz_unneeded;
1421de87f314SBarry Smith   isend[3] += info->memory;  isend[4] += info->mallocs;
142226fbe8dcSKarl Rupp 
14230ac07820SSatish Balay   if (flag == MAT_LOCAL) {
14244e220ebcSLois Curfman McInnes     info->nz_used      = isend[0];
14254e220ebcSLois Curfman McInnes     info->nz_allocated = isend[1];
14264e220ebcSLois Curfman McInnes     info->nz_unneeded  = isend[2];
14274e220ebcSLois Curfman McInnes     info->memory       = isend[3];
14284e220ebcSLois Curfman McInnes     info->mallocs      = isend[4];
14290ac07820SSatish Balay   } else if (flag == MAT_GLOBAL_MAX) {
14301c2dc1cbSBarry Smith     PetscCall(MPIU_Allreduce(isend,irecv,5,MPIU_PETSCLOGDOUBLE,MPI_MAX,PetscObjectComm((PetscObject)matin)));
143126fbe8dcSKarl Rupp 
14324e220ebcSLois Curfman McInnes     info->nz_used      = irecv[0];
14334e220ebcSLois Curfman McInnes     info->nz_allocated = irecv[1];
14344e220ebcSLois Curfman McInnes     info->nz_unneeded  = irecv[2];
14354e220ebcSLois Curfman McInnes     info->memory       = irecv[3];
14364e220ebcSLois Curfman McInnes     info->mallocs      = irecv[4];
14370ac07820SSatish Balay   } else if (flag == MAT_GLOBAL_SUM) {
14381c2dc1cbSBarry Smith     PetscCall(MPIU_Allreduce(isend,irecv,5,MPIU_PETSCLOGDOUBLE,MPI_SUM,PetscObjectComm((PetscObject)matin)));
143926fbe8dcSKarl Rupp 
14404e220ebcSLois Curfman McInnes     info->nz_used      = irecv[0];
14414e220ebcSLois Curfman McInnes     info->nz_allocated = irecv[1];
14424e220ebcSLois Curfman McInnes     info->nz_unneeded  = irecv[2];
14434e220ebcSLois Curfman McInnes     info->memory       = irecv[3];
14444e220ebcSLois Curfman McInnes     info->mallocs      = irecv[4];
144598921bdaSJacob Faibussowitsch   } else SETERRQ(PetscObjectComm((PetscObject)matin),PETSC_ERR_ARG_WRONG,"Unknown MatInfoType argument %d",(int)flag);
14464e220ebcSLois Curfman McInnes   info->fill_ratio_given  = 0; /* no parallel LU/ILU/Cholesky */
14474e220ebcSLois Curfman McInnes   info->fill_ratio_needed = 0;
14484e220ebcSLois Curfman McInnes   info->factor_mallocs    = 0;
14493a40ed3dSBarry Smith   PetscFunctionReturn(0);
14500ac07820SSatish Balay }
14510ac07820SSatish Balay 
1452ace3abfcSBarry Smith PetscErrorCode MatSetOption_MPIBAIJ(Mat A,MatOption op,PetscBool flg)
145358667388SSatish Balay {
145458667388SSatish Balay   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)A->data;
145558667388SSatish Balay 
1456d64ed03dSBarry Smith   PetscFunctionBegin;
145712c028f9SKris Buschelman   switch (op) {
1458512a5fc5SBarry Smith   case MAT_NEW_NONZERO_LOCATIONS:
145912c028f9SKris Buschelman   case MAT_NEW_NONZERO_ALLOCATION_ERR:
146028b2fa4aSMatthew Knepley   case MAT_UNUSED_NONZERO_LOCATION_ERR:
1461a9817697SBarry Smith   case MAT_KEEP_NONZERO_PATTERN:
146212c028f9SKris Buschelman   case MAT_NEW_NONZERO_LOCATION_ERR:
146343674050SBarry Smith     MatCheckPreallocated(A,1);
14649566063dSJacob Faibussowitsch     PetscCall(MatSetOption(a->A,op,flg));
14659566063dSJacob Faibussowitsch     PetscCall(MatSetOption(a->B,op,flg));
146612c028f9SKris Buschelman     break;
146712c028f9SKris Buschelman   case MAT_ROW_ORIENTED:
146843674050SBarry Smith     MatCheckPreallocated(A,1);
14694e0d8c25SBarry Smith     a->roworiented = flg;
147026fbe8dcSKarl Rupp 
14719566063dSJacob Faibussowitsch     PetscCall(MatSetOption(a->A,op,flg));
14729566063dSJacob Faibussowitsch     PetscCall(MatSetOption(a->B,op,flg));
147312c028f9SKris Buschelman     break;
14748c78258cSHong Zhang   case MAT_FORCE_DIAGONAL_ENTRIES:
1475071fcb05SBarry Smith   case MAT_SORTED_FULL:
14769566063dSJacob Faibussowitsch     PetscCall(PetscInfo(A,"Option %s ignored\n",MatOptions[op]));
147712c028f9SKris Buschelman     break;
147812c028f9SKris Buschelman   case MAT_IGNORE_OFF_PROC_ENTRIES:
14794e0d8c25SBarry Smith     a->donotstash = flg;
148012c028f9SKris Buschelman     break;
148112c028f9SKris Buschelman   case MAT_USE_HASH_TABLE:
14824e0d8c25SBarry Smith     a->ht_flag = flg;
1483abf3b562SBarry Smith     a->ht_fact = 1.39;
148412c028f9SKris Buschelman     break;
148577e54ba9SKris Buschelman   case MAT_SYMMETRIC:
148677e54ba9SKris Buschelman   case MAT_STRUCTURALLY_SYMMETRIC:
14872188ac68SBarry Smith   case MAT_HERMITIAN:
1488c10200c1SHong Zhang   case MAT_SUBMAT_SINGLEIS:
14892188ac68SBarry Smith   case MAT_SYMMETRY_ETERNAL:
1490b94d7dedSBarry Smith   case MAT_STRUCTURAL_SYMMETRY_ETERNAL:
1491b94d7dedSBarry Smith   case MAT_SPD_ETERNAL:
1492b94d7dedSBarry Smith     /* if the diagonal matrix is square it inherits some of the properties above */
149377e54ba9SKris Buschelman     break;
149412c028f9SKris Buschelman   default:
149598921bdaSJacob Faibussowitsch     SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_SUP,"unknown option %d",op);
1496d64ed03dSBarry Smith   }
14973a40ed3dSBarry Smith   PetscFunctionReturn(0);
149858667388SSatish Balay }
149958667388SSatish Balay 
1500fc4dec0aSBarry Smith PetscErrorCode MatTranspose_MPIBAIJ(Mat A,MatReuse reuse,Mat *matout)
15010ac07820SSatish Balay {
15020ac07820SSatish Balay   Mat_MPIBAIJ    *baij = (Mat_MPIBAIJ*)A->data;
15030ac07820SSatish Balay   Mat_SeqBAIJ    *Aloc;
15040ac07820SSatish Balay   Mat            B;
1505d0f46423SBarry Smith   PetscInt       M =A->rmap->N,N=A->cmap->N,*ai,*aj,i,*rvals,j,k,col;
1506d0f46423SBarry Smith   PetscInt       bs=A->rmap->bs,mbs=baij->mbs;
15073eda8832SBarry Smith   MatScalar      *a;
15080ac07820SSatish Balay 
1509d64ed03dSBarry Smith   PetscFunctionBegin;
15107fb60732SBarry Smith   if (reuse == MAT_REUSE_MATRIX) PetscCall(MatTransposeCheckNonzeroState_Private(A,*matout));
1511cf37664fSBarry Smith   if (reuse == MAT_INITIAL_MATRIX || reuse == MAT_INPLACE_MATRIX) {
15129566063dSJacob Faibussowitsch     PetscCall(MatCreate(PetscObjectComm((PetscObject)A),&B));
15139566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(B,A->cmap->n,A->rmap->n,N,M));
15149566063dSJacob Faibussowitsch     PetscCall(MatSetType(B,((PetscObject)A)->type_name));
15152e72b8d9SBarry Smith     /* Do not know preallocation information, but must set block size */
15169566063dSJacob Faibussowitsch     PetscCall(MatMPIBAIJSetPreallocation(B,A->rmap->bs,PETSC_DECIDE,NULL,PETSC_DECIDE,NULL));
1517fc4dec0aSBarry Smith   } else {
1518fc4dec0aSBarry Smith     B = *matout;
1519fc4dec0aSBarry Smith   }
15200ac07820SSatish Balay 
15210ac07820SSatish Balay   /* copy over the A part */
15220ac07820SSatish Balay   Aloc = (Mat_SeqBAIJ*)baij->A->data;
15230ac07820SSatish Balay   ai   = Aloc->i; aj = Aloc->j; a = Aloc->a;
15249566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(bs,&rvals));
15250ac07820SSatish Balay 
15260ac07820SSatish Balay   for (i=0; i<mbs; i++) {
1527899cda47SBarry Smith     rvals[0] = bs*(baij->rstartbs + i);
152826fbe8dcSKarl Rupp     for (j=1; j<bs; j++) rvals[j] = rvals[j-1] + 1;
15290ac07820SSatish Balay     for (j=ai[i]; j<ai[i+1]; j++) {
1530899cda47SBarry Smith       col = (baij->cstartbs+aj[j])*bs;
15310ac07820SSatish Balay       for (k=0; k<bs; k++) {
15329566063dSJacob Faibussowitsch         PetscCall(MatSetValues_MPIBAIJ(B,1,&col,bs,rvals,a,INSERT_VALUES));
153326fbe8dcSKarl Rupp 
15340ac07820SSatish Balay         col++; a += bs;
15350ac07820SSatish Balay       }
15360ac07820SSatish Balay     }
15370ac07820SSatish Balay   }
15380ac07820SSatish Balay   /* copy over the B part */
15390ac07820SSatish Balay   Aloc = (Mat_SeqBAIJ*)baij->B->data;
15400ac07820SSatish Balay   ai   = Aloc->i; aj = Aloc->j; a = Aloc->a;
15410ac07820SSatish Balay   for (i=0; i<mbs; i++) {
1542899cda47SBarry Smith     rvals[0] = bs*(baij->rstartbs + i);
154326fbe8dcSKarl Rupp     for (j=1; j<bs; j++) rvals[j] = rvals[j-1] + 1;
15440ac07820SSatish Balay     for (j=ai[i]; j<ai[i+1]; j++) {
15450ac07820SSatish Balay       col = baij->garray[aj[j]]*bs;
15460ac07820SSatish Balay       for (k=0; k<bs; k++) {
15479566063dSJacob Faibussowitsch         PetscCall(MatSetValues_MPIBAIJ(B,1,&col,bs,rvals,a,INSERT_VALUES));
154826fbe8dcSKarl Rupp         col++;
154926fbe8dcSKarl Rupp         a += bs;
15500ac07820SSatish Balay       }
15510ac07820SSatish Balay     }
15520ac07820SSatish Balay   }
15539566063dSJacob Faibussowitsch   PetscCall(PetscFree(rvals));
15549566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY));
15559566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY));
15560ac07820SSatish Balay 
1557cf37664fSBarry Smith   if (reuse == MAT_INITIAL_MATRIX || reuse == MAT_REUSE_MATRIX) *matout = B;
155826fbe8dcSKarl Rupp   else {
15599566063dSJacob Faibussowitsch     PetscCall(MatHeaderMerge(A,&B));
15600ac07820SSatish Balay   }
15613a40ed3dSBarry Smith   PetscFunctionReturn(0);
15620ac07820SSatish Balay }
15630e95ebc0SSatish Balay 
1564dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_MPIBAIJ(Mat mat,Vec ll,Vec rr)
15650e95ebc0SSatish Balay {
156636c4a09eSSatish Balay   Mat_MPIBAIJ    *baij = (Mat_MPIBAIJ*)mat->data;
156736c4a09eSSatish Balay   Mat            a     = baij->A,b = baij->B;
1568b24ad042SBarry Smith   PetscInt       s1,s2,s3;
15690e95ebc0SSatish Balay 
1570d64ed03dSBarry Smith   PetscFunctionBegin;
15719566063dSJacob Faibussowitsch   PetscCall(MatGetLocalSize(mat,&s2,&s3));
157236c4a09eSSatish Balay   if (rr) {
15739566063dSJacob Faibussowitsch     PetscCall(VecGetLocalSize(rr,&s1));
15745f80ce2aSJacob Faibussowitsch     PetscCheck(s1==s3,PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"right vector non-conforming local size");
157536c4a09eSSatish Balay     /* Overlap communication with computation. */
15769566063dSJacob Faibussowitsch     PetscCall(VecScatterBegin(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD));
157736c4a09eSSatish Balay   }
15780e95ebc0SSatish Balay   if (ll) {
15799566063dSJacob Faibussowitsch     PetscCall(VecGetLocalSize(ll,&s1));
15805f80ce2aSJacob Faibussowitsch     PetscCheck(s1==s2,PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"left vector non-conforming local size");
15819566063dSJacob Faibussowitsch     PetscCall((*b->ops->diagonalscale)(b,ll,NULL));
15820e95ebc0SSatish Balay   }
158336c4a09eSSatish Balay   /* scale  the diagonal block */
15849566063dSJacob Faibussowitsch   PetscCall((*a->ops->diagonalscale)(a,ll,rr));
158536c4a09eSSatish Balay 
158636c4a09eSSatish Balay   if (rr) {
158736c4a09eSSatish Balay     /* Do a scatter end and then right scale the off-diagonal block */
15889566063dSJacob Faibussowitsch     PetscCall(VecScatterEnd(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD));
15899566063dSJacob Faibussowitsch     PetscCall((*b->ops->diagonalscale)(b,NULL,baij->lvec));
159036c4a09eSSatish Balay   }
15913a40ed3dSBarry Smith   PetscFunctionReturn(0);
15920e95ebc0SSatish Balay }
15930e95ebc0SSatish Balay 
15942b40b63fSBarry Smith PetscErrorCode MatZeroRows_MPIBAIJ(Mat A,PetscInt N,const PetscInt rows[],PetscScalar diag,Vec x,Vec b)
15950ac07820SSatish Balay {
15960ac07820SSatish Balay   Mat_MPIBAIJ   *l      = (Mat_MPIBAIJ *) A->data;
159765a92638SMatthew G. Knepley   PetscInt      *lrows;
15986e520ac8SStefano Zampini   PetscInt       r, len;
159994342113SStefano Zampini   PetscBool      cong;
16000ac07820SSatish Balay 
1601d64ed03dSBarry Smith   PetscFunctionBegin;
16026e520ac8SStefano Zampini   /* get locally owned rows */
16039566063dSJacob Faibussowitsch   PetscCall(MatZeroRowsMapLocal_Private(A,N,rows,&len,&lrows));
160497b48c8fSBarry Smith   /* fix right hand side if needed */
160597b48c8fSBarry Smith   if (x && b) {
160665a92638SMatthew G. Knepley     const PetscScalar *xx;
160765a92638SMatthew G. Knepley     PetscScalar       *bb;
160865a92638SMatthew G. Knepley 
16099566063dSJacob Faibussowitsch     PetscCall(VecGetArrayRead(x,&xx));
16109566063dSJacob Faibussowitsch     PetscCall(VecGetArray(b,&bb));
161165a92638SMatthew G. Knepley     for (r = 0; r < len; ++r) bb[lrows[r]] = diag*xx[lrows[r]];
16129566063dSJacob Faibussowitsch     PetscCall(VecRestoreArrayRead(x,&xx));
16139566063dSJacob Faibussowitsch     PetscCall(VecRestoreArray(b,&bb));
161497b48c8fSBarry Smith   }
161597b48c8fSBarry Smith 
16160ac07820SSatish Balay   /* actually zap the local rows */
161772dacd9aSBarry Smith   /*
161872dacd9aSBarry Smith         Zero the required rows. If the "diagonal block" of the matrix
1619a8c7a070SBarry Smith      is square and the user wishes to set the diagonal we use separate
162072dacd9aSBarry Smith      code so that MatSetValues() is not called for each diagonal allocating
162172dacd9aSBarry Smith      new memory, thus calling lots of mallocs and slowing things down.
162272dacd9aSBarry Smith 
162372dacd9aSBarry Smith   */
16249c957beeSSatish Balay   /* must zero l->B before l->A because the (diag) case below may put values into l->B*/
16259566063dSJacob Faibussowitsch   PetscCall(MatZeroRows_SeqBAIJ(l->B,len,lrows,0.0,NULL,NULL));
16269566063dSJacob Faibussowitsch   PetscCall(MatHasCongruentLayouts(A,&cong));
162794342113SStefano Zampini   if ((diag != 0.0) && cong) {
16289566063dSJacob Faibussowitsch     PetscCall(MatZeroRows_SeqBAIJ(l->A,len,lrows,diag,NULL,NULL));
1629f4df32b1SMatthew Knepley   } else if (diag != 0.0) {
16309566063dSJacob Faibussowitsch     PetscCall(MatZeroRows_SeqBAIJ(l->A,len,lrows,0.0,NULL,NULL));
16315f80ce2aSJacob Faibussowitsch     PetscCheck(!((Mat_SeqBAIJ*)l->A->data)->nonew,PETSC_COMM_SELF,PETSC_ERR_SUP,"MatZeroRows() on rectangular matrices cannot be used with the Mat options \n\
1632512a5fc5SBarry Smith        MAT_NEW_NONZERO_LOCATIONS,MAT_NEW_NONZERO_LOCATION_ERR,MAT_NEW_NONZERO_ALLOCATION_ERR");
163365a92638SMatthew G. Knepley     for (r = 0; r < len; ++r) {
163465a92638SMatthew G. Knepley       const PetscInt row = lrows[r] + A->rmap->rstart;
16359566063dSJacob Faibussowitsch       PetscCall(MatSetValues(A,1,&row,1,&row,&diag,INSERT_VALUES));
1636a07cd24cSSatish Balay     }
16379566063dSJacob Faibussowitsch     PetscCall(MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY));
16389566063dSJacob Faibussowitsch     PetscCall(MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY));
16399c957beeSSatish Balay   } else {
16409566063dSJacob Faibussowitsch     PetscCall(MatZeroRows_SeqBAIJ(l->A,len,lrows,0.0,NULL,NULL));
1641a07cd24cSSatish Balay   }
16429566063dSJacob Faibussowitsch   PetscCall(PetscFree(lrows));
16434f9cfa9eSBarry Smith 
16444f9cfa9eSBarry Smith   /* only change matrix nonzero state if pattern was allowed to be changed */
16454f9cfa9eSBarry Smith   if (!((Mat_SeqBAIJ*)(l->A->data))->keepnonzeropattern) {
1646e56f5c9eSBarry Smith     PetscObjectState state = l->A->nonzerostate + l->B->nonzerostate;
16471c2dc1cbSBarry Smith     PetscCall(MPIU_Allreduce(&state,&A->nonzerostate,1,MPIU_INT64,MPI_SUM,PetscObjectComm((PetscObject)A)));
1648e56f5c9eSBarry Smith   }
16493a40ed3dSBarry Smith   PetscFunctionReturn(0);
16500ac07820SSatish Balay }
165172dacd9aSBarry Smith 
16526f0a72daSMatthew G. Knepley PetscErrorCode MatZeroRowsColumns_MPIBAIJ(Mat A,PetscInt N,const PetscInt rows[],PetscScalar diag,Vec x,Vec b)
16536f0a72daSMatthew G. Knepley {
16546f0a72daSMatthew G. Knepley   Mat_MPIBAIJ       *l = (Mat_MPIBAIJ*)A->data;
1655131c27b5Sprj-   PetscMPIInt       n = A->rmap->n,p = 0;
1656131c27b5Sprj-   PetscInt          i,j,k,r,len = 0,row,col,count;
16576f0a72daSMatthew G. Knepley   PetscInt          *lrows,*owners = A->rmap->range;
16586f0a72daSMatthew G. Knepley   PetscSFNode       *rrows;
16596f0a72daSMatthew G. Knepley   PetscSF           sf;
16606f0a72daSMatthew G. Knepley   const PetscScalar *xx;
16616f0a72daSMatthew G. Knepley   PetscScalar       *bb,*mask;
16626f0a72daSMatthew G. Knepley   Vec               xmask,lmask;
16636f0a72daSMatthew G. Knepley   Mat_SeqBAIJ       *baij = (Mat_SeqBAIJ*)l->B->data;
16646f0a72daSMatthew G. Knepley   PetscInt           bs = A->rmap->bs, bs2 = baij->bs2;
16656f0a72daSMatthew G. Knepley   PetscScalar       *aa;
16666f0a72daSMatthew G. Knepley 
16676f0a72daSMatthew G. Knepley   PetscFunctionBegin;
16686f0a72daSMatthew G. Knepley   /* Create SF where leaves are input rows and roots are owned rows */
16699566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(n, &lrows));
16706f0a72daSMatthew G. Knepley   for (r = 0; r < n; ++r) lrows[r] = -1;
16719566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(N, &rrows));
16726f0a72daSMatthew G. Knepley   for (r = 0; r < N; ++r) {
16736f0a72daSMatthew G. Knepley     const PetscInt idx   = rows[r];
16745f80ce2aSJacob Faibussowitsch     PetscCheck(idx >= 0 && A->rmap->N > idx,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row %" PetscInt_FMT " out of range [0,%" PetscInt_FMT ")",idx,A->rmap->N);
16755ba17502SJed Brown     if (idx < owners[p] || owners[p+1] <= idx) { /* short-circuit the search if the last p owns this row too */
16769566063dSJacob Faibussowitsch       PetscCall(PetscLayoutFindOwner(A->rmap,idx,&p));
16775ba17502SJed Brown     }
16786f0a72daSMatthew G. Knepley     rrows[r].rank  = p;
16796f0a72daSMatthew G. Knepley     rrows[r].index = rows[r] - owners[p];
16806f0a72daSMatthew G. Knepley   }
16819566063dSJacob Faibussowitsch   PetscCall(PetscSFCreate(PetscObjectComm((PetscObject) A), &sf));
16829566063dSJacob Faibussowitsch   PetscCall(PetscSFSetGraph(sf, n, N, NULL, PETSC_OWN_POINTER, rrows, PETSC_OWN_POINTER));
16836f0a72daSMatthew G. Knepley   /* Collect flags for rows to be zeroed */
16849566063dSJacob Faibussowitsch   PetscCall(PetscSFReduceBegin(sf, MPIU_INT, (PetscInt *) rows, lrows, MPI_LOR));
16859566063dSJacob Faibussowitsch   PetscCall(PetscSFReduceEnd(sf, MPIU_INT, (PetscInt *) rows, lrows, MPI_LOR));
16869566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&sf));
16876f0a72daSMatthew G. Knepley   /* Compress and put in row numbers */
16886f0a72daSMatthew G. Knepley   for (r = 0; r < n; ++r) if (lrows[r] >= 0) lrows[len++] = r;
16896f0a72daSMatthew G. Knepley   /* zero diagonal part of matrix */
16909566063dSJacob Faibussowitsch   PetscCall(MatZeroRowsColumns(l->A,len,lrows,diag,x,b));
16916f0a72daSMatthew G. Knepley   /* handle off diagonal part of matrix */
16929566063dSJacob Faibussowitsch   PetscCall(MatCreateVecs(A,&xmask,NULL));
16939566063dSJacob Faibussowitsch   PetscCall(VecDuplicate(l->lvec,&lmask));
16949566063dSJacob Faibussowitsch   PetscCall(VecGetArray(xmask,&bb));
16956f0a72daSMatthew G. Knepley   for (i=0; i<len; i++) bb[lrows[i]] = 1;
16969566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(xmask,&bb));
16979566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(l->Mvctx,xmask,lmask,ADD_VALUES,SCATTER_FORWARD));
16989566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(l->Mvctx,xmask,lmask,ADD_VALUES,SCATTER_FORWARD));
16999566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&xmask));
17006f0a72daSMatthew G. Knepley   if (x) {
17019566063dSJacob Faibussowitsch     PetscCall(VecScatterBegin(l->Mvctx,x,l->lvec,INSERT_VALUES,SCATTER_FORWARD));
17029566063dSJacob Faibussowitsch     PetscCall(VecScatterEnd(l->Mvctx,x,l->lvec,INSERT_VALUES,SCATTER_FORWARD));
17039566063dSJacob Faibussowitsch     PetscCall(VecGetArrayRead(l->lvec,&xx));
17049566063dSJacob Faibussowitsch     PetscCall(VecGetArray(b,&bb));
17056f0a72daSMatthew G. Knepley   }
17069566063dSJacob Faibussowitsch   PetscCall(VecGetArray(lmask,&mask));
17076f0a72daSMatthew G. Knepley   /* remove zeroed rows of off diagonal matrix */
17086f0a72daSMatthew G. Knepley   for (i = 0; i < len; ++i) {
17096f0a72daSMatthew G. Knepley     row   = lrows[i];
17106f0a72daSMatthew G. Knepley     count = (baij->i[row/bs +1] - baij->i[row/bs])*bs;
17116f0a72daSMatthew G. Knepley     aa    = ((MatScalar*)(baij->a)) + baij->i[row/bs]*bs2 + (row%bs);
17126f0a72daSMatthew G. Knepley     for (k = 0; k < count; ++k) {
17136f0a72daSMatthew G. Knepley       aa[0] = 0.0;
17146f0a72daSMatthew G. Knepley       aa   += bs;
17156f0a72daSMatthew G. Knepley     }
17166f0a72daSMatthew G. Knepley   }
17176f0a72daSMatthew G. Knepley   /* loop over all elements of off process part of matrix zeroing removed columns*/
17186f0a72daSMatthew G. Knepley   for (i = 0; i < l->B->rmap->N; ++i) {
17196f0a72daSMatthew G. Knepley     row = i/bs;
17206f0a72daSMatthew G. Knepley     for (j = baij->i[row]; j < baij->i[row+1]; ++j) {
17216f0a72daSMatthew G. Knepley       for (k = 0; k < bs; ++k) {
17226f0a72daSMatthew G. Knepley         col = bs*baij->j[j] + k;
17236f0a72daSMatthew G. Knepley         if (PetscAbsScalar(mask[col])) {
17246f0a72daSMatthew G. Knepley           aa = ((MatScalar*)(baij->a)) + j*bs2 + (i%bs) + bs*k;
172589ae1891SBarry Smith           if (x) bb[i] -= aa[0]*xx[col];
17266f0a72daSMatthew G. Knepley           aa[0] = 0.0;
17276f0a72daSMatthew G. Knepley         }
17286f0a72daSMatthew G. Knepley       }
17296f0a72daSMatthew G. Knepley     }
17306f0a72daSMatthew G. Knepley   }
17316f0a72daSMatthew G. Knepley   if (x) {
17329566063dSJacob Faibussowitsch     PetscCall(VecRestoreArray(b,&bb));
17339566063dSJacob Faibussowitsch     PetscCall(VecRestoreArrayRead(l->lvec,&xx));
17346f0a72daSMatthew G. Knepley   }
17359566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(lmask,&mask));
17369566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&lmask));
17379566063dSJacob Faibussowitsch   PetscCall(PetscFree(lrows));
17384f9cfa9eSBarry Smith 
17394f9cfa9eSBarry Smith   /* only change matrix nonzero state if pattern was allowed to be changed */
17404f9cfa9eSBarry Smith   if (!((Mat_SeqBAIJ*)(l->A->data))->keepnonzeropattern) {
17414f9cfa9eSBarry Smith     PetscObjectState state = l->A->nonzerostate + l->B->nonzerostate;
17421c2dc1cbSBarry Smith     PetscCall(MPIU_Allreduce(&state,&A->nonzerostate,1,MPIU_INT64,MPI_SUM,PetscObjectComm((PetscObject)A)));
17434f9cfa9eSBarry Smith   }
17446f0a72daSMatthew G. Knepley   PetscFunctionReturn(0);
17456f0a72daSMatthew G. Knepley }
17466f0a72daSMatthew G. Knepley 
1747dfbe8321SBarry Smith PetscErrorCode MatSetUnfactored_MPIBAIJ(Mat A)
1748bb5a7306SBarry Smith {
1749bb5a7306SBarry Smith   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)A->data;
1750d64ed03dSBarry Smith 
1751d64ed03dSBarry Smith   PetscFunctionBegin;
17529566063dSJacob Faibussowitsch   PetscCall(MatSetUnfactored(a->A));
17533a40ed3dSBarry Smith   PetscFunctionReturn(0);
1754bb5a7306SBarry Smith }
1755bb5a7306SBarry Smith 
17566849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIBAIJ(Mat,MatDuplicateOption,Mat*);
17570ac07820SSatish Balay 
1758ace3abfcSBarry Smith PetscErrorCode MatEqual_MPIBAIJ(Mat A,Mat B,PetscBool  *flag)
17597fc3c18eSBarry Smith {
17607fc3c18eSBarry Smith   Mat_MPIBAIJ    *matB = (Mat_MPIBAIJ*)B->data,*matA = (Mat_MPIBAIJ*)A->data;
17617fc3c18eSBarry Smith   Mat            a,b,c,d;
1762ace3abfcSBarry Smith   PetscBool      flg;
17637fc3c18eSBarry Smith 
17647fc3c18eSBarry Smith   PetscFunctionBegin;
17657fc3c18eSBarry Smith   a = matA->A; b = matA->B;
17667fc3c18eSBarry Smith   c = matB->A; d = matB->B;
17677fc3c18eSBarry Smith 
17689566063dSJacob Faibussowitsch   PetscCall(MatEqual(a,c,&flg));
1769abc0a331SBarry Smith   if (flg) {
17709566063dSJacob Faibussowitsch     PetscCall(MatEqual(b,d,&flg));
17717fc3c18eSBarry Smith   }
17721c2dc1cbSBarry Smith   PetscCall(MPIU_Allreduce(&flg,flag,1,MPIU_BOOL,MPI_LAND,PetscObjectComm((PetscObject)A)));
17737fc3c18eSBarry Smith   PetscFunctionReturn(0);
17747fc3c18eSBarry Smith }
17757fc3c18eSBarry Smith 
17763c896bc6SHong Zhang PetscErrorCode MatCopy_MPIBAIJ(Mat A,Mat B,MatStructure str)
17773c896bc6SHong Zhang {
17783c896bc6SHong Zhang   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)A->data;
17793c896bc6SHong Zhang   Mat_MPIBAIJ    *b = (Mat_MPIBAIJ*)B->data;
17803c896bc6SHong Zhang 
17813c896bc6SHong Zhang   PetscFunctionBegin;
17823c896bc6SHong Zhang   /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */
17833c896bc6SHong Zhang   if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) {
17849566063dSJacob Faibussowitsch     PetscCall(MatCopy_Basic(A,B,str));
17853c896bc6SHong Zhang   } else {
17869566063dSJacob Faibussowitsch     PetscCall(MatCopy(a->A,b->A,str));
17879566063dSJacob Faibussowitsch     PetscCall(MatCopy(a->B,b->B,str));
17883c896bc6SHong Zhang   }
17899566063dSJacob Faibussowitsch   PetscCall(PetscObjectStateIncrease((PetscObject)B));
17903c896bc6SHong Zhang   PetscFunctionReturn(0);
17913c896bc6SHong Zhang }
1792273d9f13SBarry Smith 
17934994cf47SJed Brown PetscErrorCode MatSetUp_MPIBAIJ(Mat A)
1794273d9f13SBarry Smith {
1795273d9f13SBarry Smith   PetscFunctionBegin;
17969566063dSJacob Faibussowitsch   PetscCall(MatMPIBAIJSetPreallocation(A,A->rmap->bs,PETSC_DEFAULT,NULL,PETSC_DEFAULT,NULL));
1797273d9f13SBarry Smith   PetscFunctionReturn(0);
1798273d9f13SBarry Smith }
1799273d9f13SBarry Smith 
18004de5dceeSHong Zhang PetscErrorCode MatAXPYGetPreallocation_MPIBAIJ(Mat Y,const PetscInt *yltog,Mat X,const PetscInt *xltog,PetscInt *nnz)
18014de5dceeSHong Zhang {
1802001ddc4fSHong Zhang   PetscInt       bs = Y->rmap->bs,m = Y->rmap->N/bs;
18034de5dceeSHong Zhang   Mat_SeqBAIJ    *x = (Mat_SeqBAIJ*)X->data;
18044de5dceeSHong Zhang   Mat_SeqBAIJ    *y = (Mat_SeqBAIJ*)Y->data;
18054de5dceeSHong Zhang 
18064de5dceeSHong Zhang   PetscFunctionBegin;
18079566063dSJacob Faibussowitsch   PetscCall(MatAXPYGetPreallocation_MPIX_private(m,x->i,x->j,xltog,y->i,y->j,yltog,nnz));
18084de5dceeSHong Zhang   PetscFunctionReturn(0);
18094de5dceeSHong Zhang }
18104de5dceeSHong Zhang 
18114fe895cdSHong Zhang PetscErrorCode MatAXPY_MPIBAIJ(Mat Y,PetscScalar a,Mat X,MatStructure str)
18124fe895cdSHong Zhang {
18134fe895cdSHong Zhang   Mat_MPIBAIJ    *xx=(Mat_MPIBAIJ*)X->data,*yy=(Mat_MPIBAIJ*)Y->data;
18144fe895cdSHong Zhang   PetscBLASInt   bnz,one=1;
18154fe895cdSHong Zhang   Mat_SeqBAIJ    *x,*y;
1816b31f67cfSBarry Smith   PetscInt       bs2 = Y->rmap->bs*Y->rmap->bs;
18174fe895cdSHong Zhang 
18184fe895cdSHong Zhang   PetscFunctionBegin;
18194fe895cdSHong Zhang   if (str == SAME_NONZERO_PATTERN) {
18204fe895cdSHong Zhang     PetscScalar alpha = a;
18214fe895cdSHong Zhang     x    = (Mat_SeqBAIJ*)xx->A->data;
18224fe895cdSHong Zhang     y    = (Mat_SeqBAIJ*)yy->A->data;
18239566063dSJacob Faibussowitsch     PetscCall(PetscBLASIntCast(x->nz*bs2,&bnz));
1824792fecdfSBarry Smith     PetscCallBLAS("BLASaxpy",BLASaxpy_(&bnz,&alpha,x->a,&one,y->a,&one));
18254fe895cdSHong Zhang     x    = (Mat_SeqBAIJ*)xx->B->data;
18264fe895cdSHong Zhang     y    = (Mat_SeqBAIJ*)yy->B->data;
18279566063dSJacob Faibussowitsch     PetscCall(PetscBLASIntCast(x->nz*bs2,&bnz));
1828792fecdfSBarry Smith     PetscCallBLAS("BLASaxpy",BLASaxpy_(&bnz,&alpha,x->a,&one,y->a,&one));
18299566063dSJacob Faibussowitsch     PetscCall(PetscObjectStateIncrease((PetscObject)Y));
1830ab784542SHong Zhang   } else if (str == SUBSET_NONZERO_PATTERN) { /* nonzeros of X is a subset of Y's */
18319566063dSJacob Faibussowitsch     PetscCall(MatAXPY_Basic(Y,a,X,str));
18324fe895cdSHong Zhang   } else {
18334de5dceeSHong Zhang     Mat      B;
18344de5dceeSHong Zhang     PetscInt *nnz_d,*nnz_o,bs=Y->rmap->bs;
18359566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(yy->A->rmap->N,&nnz_d));
18369566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(yy->B->rmap->N,&nnz_o));
18379566063dSJacob Faibussowitsch     PetscCall(MatCreate(PetscObjectComm((PetscObject)Y),&B));
18389566063dSJacob Faibussowitsch     PetscCall(PetscObjectSetName((PetscObject)B,((PetscObject)Y)->name));
18399566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(B,Y->rmap->n,Y->cmap->n,Y->rmap->N,Y->cmap->N));
18409566063dSJacob Faibussowitsch     PetscCall(MatSetBlockSizesFromMats(B,Y,Y));
18419566063dSJacob Faibussowitsch     PetscCall(MatSetType(B,MATMPIBAIJ));
18429566063dSJacob Faibussowitsch     PetscCall(MatAXPYGetPreallocation_SeqBAIJ(yy->A,xx->A,nnz_d));
18439566063dSJacob Faibussowitsch     PetscCall(MatAXPYGetPreallocation_MPIBAIJ(yy->B,yy->garray,xx->B,xx->garray,nnz_o));
18449566063dSJacob Faibussowitsch     PetscCall(MatMPIBAIJSetPreallocation(B,bs,0,nnz_d,0,nnz_o));
18454de5dceeSHong Zhang     /* MatAXPY_BasicWithPreallocation() for BAIJ matrix is much slower than AIJ, even for bs=1 ! */
18469566063dSJacob Faibussowitsch     PetscCall(MatAXPY_BasicWithPreallocation(B,Y,a,X,str));
18479566063dSJacob Faibussowitsch     PetscCall(MatHeaderMerge(Y,&B));
18489566063dSJacob Faibussowitsch     PetscCall(PetscFree(nnz_d));
18499566063dSJacob Faibussowitsch     PetscCall(PetscFree(nnz_o));
18504fe895cdSHong Zhang   }
18514fe895cdSHong Zhang   PetscFunctionReturn(0);
18524fe895cdSHong Zhang }
18534fe895cdSHong Zhang 
18542726fb6dSPierre Jolivet PetscErrorCode MatConjugate_MPIBAIJ(Mat mat)
18552726fb6dSPierre Jolivet {
18565f80ce2aSJacob Faibussowitsch   PetscFunctionBegin;
18575f80ce2aSJacob Faibussowitsch   if (PetscDefined(USE_COMPLEX)) {
18582726fb6dSPierre Jolivet     Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)mat->data;
18592726fb6dSPierre Jolivet 
18609566063dSJacob Faibussowitsch     PetscCall(MatConjugate_SeqBAIJ(a->A));
18619566063dSJacob Faibussowitsch     PetscCall(MatConjugate_SeqBAIJ(a->B));
18625f80ce2aSJacob Faibussowitsch   }
18632726fb6dSPierre Jolivet   PetscFunctionReturn(0);
18642726fb6dSPierre Jolivet }
18652726fb6dSPierre Jolivet 
186699cafbc1SBarry Smith PetscErrorCode MatRealPart_MPIBAIJ(Mat A)
186799cafbc1SBarry Smith {
186899cafbc1SBarry Smith   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)A->data;
186999cafbc1SBarry Smith 
187099cafbc1SBarry Smith   PetscFunctionBegin;
18719566063dSJacob Faibussowitsch   PetscCall(MatRealPart(a->A));
18729566063dSJacob Faibussowitsch   PetscCall(MatRealPart(a->B));
187399cafbc1SBarry Smith   PetscFunctionReturn(0);
187499cafbc1SBarry Smith }
187599cafbc1SBarry Smith 
187699cafbc1SBarry Smith PetscErrorCode MatImaginaryPart_MPIBAIJ(Mat A)
187799cafbc1SBarry Smith {
187899cafbc1SBarry Smith   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)A->data;
187999cafbc1SBarry Smith 
188099cafbc1SBarry Smith   PetscFunctionBegin;
18819566063dSJacob Faibussowitsch   PetscCall(MatImaginaryPart(a->A));
18829566063dSJacob Faibussowitsch   PetscCall(MatImaginaryPart(a->B));
188399cafbc1SBarry Smith   PetscFunctionReturn(0);
188499cafbc1SBarry Smith }
188599cafbc1SBarry Smith 
18867dae84e0SHong Zhang PetscErrorCode MatCreateSubMatrix_MPIBAIJ(Mat mat,IS isrow,IS iscol,MatReuse call,Mat *newmat)
18874aa3045dSJed Brown {
18884aa3045dSJed Brown   IS             iscol_local;
18894aa3045dSJed Brown   PetscInt       csize;
18904aa3045dSJed Brown 
18914aa3045dSJed Brown   PetscFunctionBegin;
18929566063dSJacob Faibussowitsch   PetscCall(ISGetLocalSize(iscol,&csize));
1893b79d0421SJed Brown   if (call == MAT_REUSE_MATRIX) {
18949566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)*newmat,"ISAllGather",(PetscObject*)&iscol_local));
18955f80ce2aSJacob Faibussowitsch     PetscCheck(iscol_local,PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Submatrix passed in was not used before, cannot reuse");
1896b79d0421SJed Brown   } else {
18979566063dSJacob Faibussowitsch     PetscCall(ISAllGather(iscol,&iscol_local));
1898b79d0421SJed Brown   }
18999566063dSJacob Faibussowitsch   PetscCall(MatCreateSubMatrix_MPIBAIJ_Private(mat,isrow,iscol_local,csize,call,newmat));
1900b79d0421SJed Brown   if (call == MAT_INITIAL_MATRIX) {
19019566063dSJacob Faibussowitsch     PetscCall(PetscObjectCompose((PetscObject)*newmat,"ISAllGather",(PetscObject)iscol_local));
19029566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&iscol_local));
1903b79d0421SJed Brown   }
19044aa3045dSJed Brown   PetscFunctionReturn(0);
19054aa3045dSJed Brown }
190617df9f7cSHong Zhang 
190782094794SBarry Smith /*
190882094794SBarry Smith   Not great since it makes two copies of the submatrix, first an SeqBAIJ
190982094794SBarry Smith   in local and then by concatenating the local matrices the end result.
19107dae84e0SHong Zhang   Writing it directly would be much like MatCreateSubMatrices_MPIBAIJ().
19118f46ffcaSHong Zhang   This routine is used for BAIJ and SBAIJ matrices (unfortunate dependency).
191282094794SBarry Smith */
19137dae84e0SHong Zhang PetscErrorCode MatCreateSubMatrix_MPIBAIJ_Private(Mat mat,IS isrow,IS iscol,PetscInt csize,MatReuse call,Mat *newmat)
191482094794SBarry Smith {
191582094794SBarry Smith   PetscMPIInt    rank,size;
191682094794SBarry Smith   PetscInt       i,m,n,rstart,row,rend,nz,*cwork,j,bs;
1917c9ffca76SHong Zhang   PetscInt       *ii,*jj,nlocal,*dlens,*olens,dlen,olen,jend,mglobal;
191829dcf524SDmitry Karpeev   Mat            M,Mreuse;
191982094794SBarry Smith   MatScalar      *vwork,*aa;
1920ce94432eSBarry Smith   MPI_Comm       comm;
192129dcf524SDmitry Karpeev   IS             isrow_new, iscol_new;
192282094794SBarry Smith   Mat_SeqBAIJ    *aij;
192382094794SBarry Smith 
192482094794SBarry Smith   PetscFunctionBegin;
19259566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)mat,&comm));
19269566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(comm,&rank));
19279566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm,&size));
192829dcf524SDmitry Karpeev   /* The compression and expansion should be avoided. Doesn't point
192929dcf524SDmitry Karpeev      out errors, might change the indices, hence buggey */
19309566063dSJacob Faibussowitsch   PetscCall(ISCompressIndicesGeneral(mat->rmap->N,mat->rmap->n,mat->rmap->bs,1,&isrow,&isrow_new));
19319566063dSJacob Faibussowitsch   PetscCall(ISCompressIndicesGeneral(mat->cmap->N,mat->cmap->n,mat->cmap->bs,1,&iscol,&iscol_new));
193282094794SBarry Smith 
193382094794SBarry Smith   if (call ==  MAT_REUSE_MATRIX) {
19349566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)*newmat,"SubMatrix",(PetscObject*)&Mreuse));
19355f80ce2aSJacob Faibussowitsch     PetscCheck(Mreuse,PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Submatrix passed in was not used before, cannot reuse");
19369566063dSJacob Faibussowitsch     PetscCall(MatCreateSubMatrices_MPIBAIJ_local(mat,1,&isrow_new,&iscol_new,MAT_REUSE_MATRIX,&Mreuse));
193782094794SBarry Smith   } else {
19389566063dSJacob Faibussowitsch     PetscCall(MatCreateSubMatrices_MPIBAIJ_local(mat,1,&isrow_new,&iscol_new,MAT_INITIAL_MATRIX,&Mreuse));
193982094794SBarry Smith   }
19409566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&isrow_new));
19419566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&iscol_new));
194282094794SBarry Smith   /*
194382094794SBarry Smith       m - number of local rows
194482094794SBarry Smith       n - number of columns (same on all processors)
194582094794SBarry Smith       rstart - first row in new global matrix generated
194682094794SBarry Smith   */
19479566063dSJacob Faibussowitsch   PetscCall(MatGetBlockSize(mat,&bs));
19489566063dSJacob Faibussowitsch   PetscCall(MatGetSize(Mreuse,&m,&n));
194982094794SBarry Smith   m    = m/bs;
195082094794SBarry Smith   n    = n/bs;
195182094794SBarry Smith 
195282094794SBarry Smith   if (call == MAT_INITIAL_MATRIX) {
195382094794SBarry Smith     aij = (Mat_SeqBAIJ*)(Mreuse)->data;
195482094794SBarry Smith     ii  = aij->i;
195582094794SBarry Smith     jj  = aij->j;
195682094794SBarry Smith 
195782094794SBarry Smith     /*
195882094794SBarry Smith         Determine the number of non-zeros in the diagonal and off-diagonal
195982094794SBarry Smith         portions of the matrix in order to do correct preallocation
196082094794SBarry Smith     */
196182094794SBarry Smith 
196282094794SBarry Smith     /* first get start and end of "diagonal" columns */
196382094794SBarry Smith     if (csize == PETSC_DECIDE) {
19649566063dSJacob Faibussowitsch       PetscCall(ISGetSize(isrow,&mglobal));
196582094794SBarry Smith       if (mglobal == n*bs) { /* square matrix */
196682094794SBarry Smith         nlocal = m;
196782094794SBarry Smith       } else {
196882094794SBarry Smith         nlocal = n/size + ((n % size) > rank);
196982094794SBarry Smith       }
197082094794SBarry Smith     } else {
197182094794SBarry Smith       nlocal = csize/bs;
197282094794SBarry Smith     }
19739566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Scan(&nlocal,&rend,1,MPIU_INT,MPI_SUM,comm));
197482094794SBarry Smith     rstart = rend - nlocal;
1975aed4548fSBarry Smith     PetscCheck(rank != size - 1 || rend == n,PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Local column sizes %" PetscInt_FMT " do not add up to total number of columns %" PetscInt_FMT,rend,n);
197682094794SBarry Smith 
197782094794SBarry Smith     /* next, compute all the lengths */
19789566063dSJacob Faibussowitsch     PetscCall(PetscMalloc2(m+1,&dlens,m+1,&olens));
197982094794SBarry Smith     for (i=0; i<m; i++) {
198082094794SBarry Smith       jend = ii[i+1] - ii[i];
198182094794SBarry Smith       olen = 0;
198282094794SBarry Smith       dlen = 0;
198382094794SBarry Smith       for (j=0; j<jend; j++) {
198482094794SBarry Smith         if (*jj < rstart || *jj >= rend) olen++;
198582094794SBarry Smith         else dlen++;
198682094794SBarry Smith         jj++;
198782094794SBarry Smith       }
198882094794SBarry Smith       olens[i] = olen;
198982094794SBarry Smith       dlens[i] = dlen;
199082094794SBarry Smith     }
19919566063dSJacob Faibussowitsch     PetscCall(MatCreate(comm,&M));
19929566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(M,bs*m,bs*nlocal,PETSC_DECIDE,bs*n));
19939566063dSJacob Faibussowitsch     PetscCall(MatSetType(M,((PetscObject)mat)->type_name));
19949566063dSJacob Faibussowitsch     PetscCall(MatMPIBAIJSetPreallocation(M,bs,0,dlens,0,olens));
19959566063dSJacob Faibussowitsch     PetscCall(MatMPISBAIJSetPreallocation(M,bs,0,dlens,0,olens));
19969566063dSJacob Faibussowitsch     PetscCall(PetscFree2(dlens,olens));
199782094794SBarry Smith   } else {
199882094794SBarry Smith     PetscInt ml,nl;
199982094794SBarry Smith 
200082094794SBarry Smith     M    = *newmat;
20019566063dSJacob Faibussowitsch     PetscCall(MatGetLocalSize(M,&ml,&nl));
20025f80ce2aSJacob Faibussowitsch     PetscCheck(ml == m,PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Previous matrix must be same size/layout as request");
20039566063dSJacob Faibussowitsch     PetscCall(MatZeroEntries(M));
200482094794SBarry Smith     /*
200582094794SBarry Smith          The next two lines are needed so we may call MatSetValues_MPIAIJ() below directly,
200682094794SBarry Smith        rather than the slower MatSetValues().
200782094794SBarry Smith     */
200882094794SBarry Smith     M->was_assembled = PETSC_TRUE;
200982094794SBarry Smith     M->assembled     = PETSC_FALSE;
201082094794SBarry Smith   }
20119566063dSJacob Faibussowitsch   PetscCall(MatSetOption(M,MAT_ROW_ORIENTED,PETSC_FALSE));
20129566063dSJacob Faibussowitsch   PetscCall(MatGetOwnershipRange(M,&rstart,&rend));
201382094794SBarry Smith   aij  = (Mat_SeqBAIJ*)(Mreuse)->data;
201482094794SBarry Smith   ii   = aij->i;
201582094794SBarry Smith   jj   = aij->j;
201682094794SBarry Smith   aa   = aij->a;
201782094794SBarry Smith   for (i=0; i<m; i++) {
201882094794SBarry Smith     row   = rstart/bs + i;
201982094794SBarry Smith     nz    = ii[i+1] - ii[i];
202082094794SBarry Smith     cwork = jj;     jj += nz;
202175f6568bSJed Brown     vwork = aa;     aa += nz*bs*bs;
20229566063dSJacob Faibussowitsch     PetscCall(MatSetValuesBlocked_MPIBAIJ(M,1,&row,nz,cwork,vwork,INSERT_VALUES));
202382094794SBarry Smith   }
202482094794SBarry Smith 
20259566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(M,MAT_FINAL_ASSEMBLY));
20269566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(M,MAT_FINAL_ASSEMBLY));
202782094794SBarry Smith   *newmat = M;
202882094794SBarry Smith 
202982094794SBarry Smith   /* save submatrix used in processor for next request */
203082094794SBarry Smith   if (call ==  MAT_INITIAL_MATRIX) {
20319566063dSJacob Faibussowitsch     PetscCall(PetscObjectCompose((PetscObject)M,"SubMatrix",(PetscObject)Mreuse));
20329566063dSJacob Faibussowitsch     PetscCall(PetscObjectDereference((PetscObject)Mreuse));
203382094794SBarry Smith   }
203482094794SBarry Smith   PetscFunctionReturn(0);
203582094794SBarry Smith }
203682094794SBarry Smith 
203782094794SBarry Smith PetscErrorCode MatPermute_MPIBAIJ(Mat A,IS rowp,IS colp,Mat *B)
203882094794SBarry Smith {
203982094794SBarry Smith   MPI_Comm       comm,pcomm;
2040a0a83eb5SRémi Lacroix   PetscInt       clocal_size,nrows;
204182094794SBarry Smith   const PetscInt *rows;
2042dbf0e21dSBarry Smith   PetscMPIInt    size;
2043a0a83eb5SRémi Lacroix   IS             crowp,lcolp;
204482094794SBarry Smith 
204582094794SBarry Smith   PetscFunctionBegin;
20469566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)A,&comm));
204782094794SBarry Smith   /* make a collective version of 'rowp' */
20489566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)rowp,&pcomm));
204982094794SBarry Smith   if (pcomm==comm) {
205082094794SBarry Smith     crowp = rowp;
205182094794SBarry Smith   } else {
20529566063dSJacob Faibussowitsch     PetscCall(ISGetSize(rowp,&nrows));
20539566063dSJacob Faibussowitsch     PetscCall(ISGetIndices(rowp,&rows));
20549566063dSJacob Faibussowitsch     PetscCall(ISCreateGeneral(comm,nrows,rows,PETSC_COPY_VALUES,&crowp));
20559566063dSJacob Faibussowitsch     PetscCall(ISRestoreIndices(rowp,&rows));
205682094794SBarry Smith   }
20579566063dSJacob Faibussowitsch   PetscCall(ISSetPermutation(crowp));
2058a0a83eb5SRémi Lacroix   /* make a local version of 'colp' */
20599566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)colp,&pcomm));
20609566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(pcomm,&size));
2061dbf0e21dSBarry Smith   if (size==1) {
206282094794SBarry Smith     lcolp = colp;
206382094794SBarry Smith   } else {
20649566063dSJacob Faibussowitsch     PetscCall(ISAllGather(colp,&lcolp));
206582094794SBarry Smith   }
20669566063dSJacob Faibussowitsch   PetscCall(ISSetPermutation(lcolp));
206775f6568bSJed Brown   /* now we just get the submatrix */
20689566063dSJacob Faibussowitsch   PetscCall(MatGetLocalSize(A,NULL,&clocal_size));
20699566063dSJacob Faibussowitsch   PetscCall(MatCreateSubMatrix_MPIBAIJ_Private(A,crowp,lcolp,clocal_size,MAT_INITIAL_MATRIX,B));
2070a0a83eb5SRémi Lacroix   /* clean up */
2071a0a83eb5SRémi Lacroix   if (pcomm!=comm) {
20729566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&crowp));
2073a0a83eb5SRémi Lacroix   }
2074dbf0e21dSBarry Smith   if (size>1) {
20759566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&lcolp));
207682094794SBarry Smith   }
207782094794SBarry Smith   PetscFunctionReturn(0);
207882094794SBarry Smith }
207982094794SBarry Smith 
20807087cfbeSBarry Smith PetscErrorCode  MatGetGhosts_MPIBAIJ(Mat mat,PetscInt *nghosts,const PetscInt *ghosts[])
20818c7482ecSBarry Smith {
20828c7482ecSBarry Smith   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*) mat->data;
20838c7482ecSBarry Smith   Mat_SeqBAIJ *B    = (Mat_SeqBAIJ*)baij->B->data;
20848c7482ecSBarry Smith 
20858c7482ecSBarry Smith   PetscFunctionBegin;
208626fbe8dcSKarl Rupp   if (nghosts) *nghosts = B->nbs;
208726fbe8dcSKarl Rupp   if (ghosts) *ghosts = baij->garray;
20888c7482ecSBarry Smith   PetscFunctionReturn(0);
20898c7482ecSBarry Smith }
20908c7482ecSBarry Smith 
2091d1adec66SJed Brown PetscErrorCode MatGetSeqNonzeroStructure_MPIBAIJ(Mat A,Mat *newmat)
2092f6d58c54SBarry Smith {
2093f6d58c54SBarry Smith   Mat            B;
2094f6d58c54SBarry Smith   Mat_MPIBAIJ    *a  = (Mat_MPIBAIJ*)A->data;
2095f6d58c54SBarry Smith   Mat_SeqBAIJ    *ad = (Mat_SeqBAIJ*)a->A->data,*bd = (Mat_SeqBAIJ*)a->B->data;
2096f6d58c54SBarry Smith   Mat_SeqAIJ     *b;
2097f4259b30SLisandro Dalcin   PetscMPIInt    size,rank,*recvcounts = NULL,*displs = NULL;
2098f6d58c54SBarry Smith   PetscInt       sendcount,i,*rstarts = A->rmap->range,n,cnt,j,bs = A->rmap->bs;
2099f6d58c54SBarry Smith   PetscInt       m,*garray = a->garray,*lens,*jsendbuf,*a_jsendbuf,*b_jsendbuf;
2100f6d58c54SBarry Smith 
2101f6d58c54SBarry Smith   PetscFunctionBegin;
21029566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)A),&size));
21039566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)A),&rank));
2104f6d58c54SBarry Smith 
2105f6d58c54SBarry Smith   /* ----------------------------------------------------------------
2106f6d58c54SBarry Smith      Tell every processor the number of nonzeros per row
2107f6d58c54SBarry Smith   */
21089566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(A->rmap->N/bs,&lens));
2109f6d58c54SBarry Smith   for (i=A->rmap->rstart/bs; i<A->rmap->rend/bs; i++) {
2110f6d58c54SBarry Smith     lens[i] = ad->i[i-A->rmap->rstart/bs+1] - ad->i[i-A->rmap->rstart/bs] + bd->i[i-A->rmap->rstart/bs+1] - bd->i[i-A->rmap->rstart/bs];
2111f6d58c54SBarry Smith   }
21129566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(2*size,&recvcounts));
2113f6d58c54SBarry Smith   displs    = recvcounts + size;
2114f6d58c54SBarry Smith   for (i=0; i<size; i++) {
2115f6d58c54SBarry Smith     recvcounts[i] = A->rmap->range[i+1]/bs - A->rmap->range[i]/bs;
2116f6d58c54SBarry Smith     displs[i]     = A->rmap->range[i]/bs;
2117f6d58c54SBarry Smith   }
21189566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Allgatherv(MPI_IN_PLACE,0,MPI_DATATYPE_NULL,lens,recvcounts,displs,MPIU_INT,PetscObjectComm((PetscObject)A)));
2119f6d58c54SBarry Smith   /* ---------------------------------------------------------------
2120f6d58c54SBarry Smith      Create the sequential matrix of the same type as the local block diagonal
2121f6d58c54SBarry Smith   */
21229566063dSJacob Faibussowitsch   PetscCall(MatCreate(PETSC_COMM_SELF,&B));
21239566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(B,A->rmap->N/bs,A->cmap->N/bs,PETSC_DETERMINE,PETSC_DETERMINE));
21249566063dSJacob Faibussowitsch   PetscCall(MatSetType(B,MATSEQAIJ));
21259566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJSetPreallocation(B,0,lens));
2126f6d58c54SBarry Smith   b    = (Mat_SeqAIJ*)B->data;
2127f6d58c54SBarry Smith 
2128f6d58c54SBarry Smith   /*--------------------------------------------------------------------
2129f6d58c54SBarry Smith     Copy my part of matrix column indices over
2130f6d58c54SBarry Smith   */
2131f6d58c54SBarry Smith   sendcount  = ad->nz + bd->nz;
2132f6d58c54SBarry Smith   jsendbuf   = b->j + b->i[rstarts[rank]/bs];
2133f6d58c54SBarry Smith   a_jsendbuf = ad->j;
2134f6d58c54SBarry Smith   b_jsendbuf = bd->j;
2135f6d58c54SBarry Smith   n          = A->rmap->rend/bs - A->rmap->rstart/bs;
2136f6d58c54SBarry Smith   cnt        = 0;
2137f6d58c54SBarry Smith   for (i=0; i<n; i++) {
2138f6d58c54SBarry Smith 
2139f6d58c54SBarry Smith     /* put in lower diagonal portion */
2140f6d58c54SBarry Smith     m = bd->i[i+1] - bd->i[i];
2141f6d58c54SBarry Smith     while (m > 0) {
2142f6d58c54SBarry Smith       /* is it above diagonal (in bd (compressed) numbering) */
2143f6d58c54SBarry Smith       if (garray[*b_jsendbuf] > A->rmap->rstart/bs + i) break;
2144f6d58c54SBarry Smith       jsendbuf[cnt++] = garray[*b_jsendbuf++];
2145f6d58c54SBarry Smith       m--;
2146f6d58c54SBarry Smith     }
2147f6d58c54SBarry Smith 
2148f6d58c54SBarry Smith     /* put in diagonal portion */
2149f6d58c54SBarry Smith     for (j=ad->i[i]; j<ad->i[i+1]; j++) {
2150f6d58c54SBarry Smith       jsendbuf[cnt++] = A->rmap->rstart/bs + *a_jsendbuf++;
2151f6d58c54SBarry Smith     }
2152f6d58c54SBarry Smith 
2153f6d58c54SBarry Smith     /* put in upper diagonal portion */
2154f6d58c54SBarry Smith     while (m-- > 0) {
2155f6d58c54SBarry Smith       jsendbuf[cnt++] = garray[*b_jsendbuf++];
2156f6d58c54SBarry Smith     }
2157f6d58c54SBarry Smith   }
21585f80ce2aSJacob Faibussowitsch   PetscCheck(cnt == sendcount,PETSC_COMM_SELF,PETSC_ERR_PLIB,"Corrupted PETSc matrix: nz given %" PetscInt_FMT " actual nz %" PetscInt_FMT,sendcount,cnt);
2159f6d58c54SBarry Smith 
2160f6d58c54SBarry Smith   /*--------------------------------------------------------------------
2161f6d58c54SBarry Smith     Gather all column indices to all processors
2162f6d58c54SBarry Smith   */
2163f6d58c54SBarry Smith   for (i=0; i<size; i++) {
2164f6d58c54SBarry Smith     recvcounts[i] = 0;
2165f6d58c54SBarry Smith     for (j=A->rmap->range[i]/bs; j<A->rmap->range[i+1]/bs; j++) {
2166f6d58c54SBarry Smith       recvcounts[i] += lens[j];
2167f6d58c54SBarry Smith     }
2168f6d58c54SBarry Smith   }
2169f6d58c54SBarry Smith   displs[0] = 0;
2170f6d58c54SBarry Smith   for (i=1; i<size; i++) {
2171f6d58c54SBarry Smith     displs[i] = displs[i-1] + recvcounts[i-1];
2172f6d58c54SBarry Smith   }
21739566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Allgatherv(MPI_IN_PLACE,0,MPI_DATATYPE_NULL,b->j,recvcounts,displs,MPIU_INT,PetscObjectComm((PetscObject)A)));
2174f6d58c54SBarry Smith   /*--------------------------------------------------------------------
2175f6d58c54SBarry Smith     Assemble the matrix into useable form (note numerical values not yet set)
2176f6d58c54SBarry Smith   */
2177f6d58c54SBarry Smith   /* set the b->ilen (length of each row) values */
21789566063dSJacob Faibussowitsch   PetscCall(PetscArraycpy(b->ilen,lens,A->rmap->N/bs));
2179f6d58c54SBarry Smith   /* set the b->i indices */
2180f6d58c54SBarry Smith   b->i[0] = 0;
2181f6d58c54SBarry Smith   for (i=1; i<=A->rmap->N/bs; i++) {
2182f6d58c54SBarry Smith     b->i[i] = b->i[i-1] + lens[i-1];
2183f6d58c54SBarry Smith   }
21849566063dSJacob Faibussowitsch   PetscCall(PetscFree(lens));
21859566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY));
21869566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY));
21879566063dSJacob Faibussowitsch   PetscCall(PetscFree(recvcounts));
2188f6d58c54SBarry Smith 
2189b94d7dedSBarry Smith   PetscCall(MatPropagateSymmetryOptions(A,B));
2190f6d58c54SBarry Smith   *newmat = B;
2191f6d58c54SBarry Smith   PetscFunctionReturn(0);
2192f6d58c54SBarry Smith }
2193f6d58c54SBarry Smith 
2194b1a666ecSBarry Smith PetscErrorCode MatSOR_MPIBAIJ(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx)
2195b1a666ecSBarry Smith {
2196b1a666ecSBarry Smith   Mat_MPIBAIJ    *mat = (Mat_MPIBAIJ*)matin->data;
2197f4259b30SLisandro Dalcin   Vec            bb1 = NULL;
2198b1a666ecSBarry Smith 
2199b1a666ecSBarry Smith   PetscFunctionBegin;
2200b1a666ecSBarry Smith   if (flag == SOR_APPLY_UPPER) {
22019566063dSJacob Faibussowitsch     PetscCall((*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx));
2202b1a666ecSBarry Smith     PetscFunctionReturn(0);
2203b1a666ecSBarry Smith   }
2204b1a666ecSBarry Smith 
22054e980039SJed Brown   if (its > 1 || ~flag & SOR_ZERO_INITIAL_GUESS) {
22069566063dSJacob Faibussowitsch     PetscCall(VecDuplicate(bb,&bb1));
22074e980039SJed Brown   }
22084e980039SJed Brown 
2209b1a666ecSBarry Smith   if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP) {
2210b1a666ecSBarry Smith     if (flag & SOR_ZERO_INITIAL_GUESS) {
22119566063dSJacob Faibussowitsch       PetscCall((*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx));
2212b1a666ecSBarry Smith       its--;
2213b1a666ecSBarry Smith     }
2214b1a666ecSBarry Smith 
2215b1a666ecSBarry Smith     while (its--) {
22169566063dSJacob Faibussowitsch       PetscCall(VecScatterBegin(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD));
22179566063dSJacob Faibussowitsch       PetscCall(VecScatterEnd(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD));
2218b1a666ecSBarry Smith 
2219b1a666ecSBarry Smith       /* update rhs: bb1 = bb - B*x */
22209566063dSJacob Faibussowitsch       PetscCall(VecScale(mat->lvec,-1.0));
22219566063dSJacob Faibussowitsch       PetscCall((*mat->B->ops->multadd)(mat->B,mat->lvec,bb,bb1));
2222b1a666ecSBarry Smith 
2223b1a666ecSBarry Smith       /* local sweep */
22249566063dSJacob Faibussowitsch       PetscCall((*mat->A->ops->sor)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,1,xx));
2225b1a666ecSBarry Smith     }
2226b1a666ecSBarry Smith   } else if (flag & SOR_LOCAL_FORWARD_SWEEP) {
2227b1a666ecSBarry Smith     if (flag & SOR_ZERO_INITIAL_GUESS) {
22289566063dSJacob Faibussowitsch       PetscCall((*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx));
2229b1a666ecSBarry Smith       its--;
2230b1a666ecSBarry Smith     }
2231b1a666ecSBarry Smith     while (its--) {
22329566063dSJacob Faibussowitsch       PetscCall(VecScatterBegin(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD));
22339566063dSJacob Faibussowitsch       PetscCall(VecScatterEnd(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD));
2234b1a666ecSBarry Smith 
2235b1a666ecSBarry Smith       /* update rhs: bb1 = bb - B*x */
22369566063dSJacob Faibussowitsch       PetscCall(VecScale(mat->lvec,-1.0));
22379566063dSJacob Faibussowitsch       PetscCall((*mat->B->ops->multadd)(mat->B,mat->lvec,bb,bb1));
2238b1a666ecSBarry Smith 
2239b1a666ecSBarry Smith       /* local sweep */
22409566063dSJacob Faibussowitsch       PetscCall((*mat->A->ops->sor)(mat->A,bb1,omega,SOR_FORWARD_SWEEP,fshift,lits,1,xx));
2241b1a666ecSBarry Smith     }
2242b1a666ecSBarry Smith   } else if (flag & SOR_LOCAL_BACKWARD_SWEEP) {
2243b1a666ecSBarry Smith     if (flag & SOR_ZERO_INITIAL_GUESS) {
22449566063dSJacob Faibussowitsch       PetscCall((*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx));
2245b1a666ecSBarry Smith       its--;
2246b1a666ecSBarry Smith     }
2247b1a666ecSBarry Smith     while (its--) {
22489566063dSJacob Faibussowitsch       PetscCall(VecScatterBegin(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD));
22499566063dSJacob Faibussowitsch       PetscCall(VecScatterEnd(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD));
2250b1a666ecSBarry Smith 
2251b1a666ecSBarry Smith       /* update rhs: bb1 = bb - B*x */
22529566063dSJacob Faibussowitsch       PetscCall(VecScale(mat->lvec,-1.0));
22539566063dSJacob Faibussowitsch       PetscCall((*mat->B->ops->multadd)(mat->B,mat->lvec,bb,bb1));
2254b1a666ecSBarry Smith 
2255b1a666ecSBarry Smith       /* local sweep */
22569566063dSJacob Faibussowitsch       PetscCall((*mat->A->ops->sor)(mat->A,bb1,omega,SOR_BACKWARD_SWEEP,fshift,lits,1,xx));
2257b1a666ecSBarry Smith     }
2258ce94432eSBarry Smith   } else SETERRQ(PetscObjectComm((PetscObject)matin),PETSC_ERR_SUP,"Parallel version of SOR requested not supported");
2259b1a666ecSBarry Smith 
22609566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&bb1));
2261b1a666ecSBarry Smith   PetscFunctionReturn(0);
2262b1a666ecSBarry Smith }
2263b1a666ecSBarry Smith 
2264857cbf51SRichard Tran Mills PetscErrorCode MatGetColumnReductions_MPIBAIJ(Mat A,PetscInt type,PetscReal *reductions)
226547f7623dSRémi Lacroix {
226647f7623dSRémi Lacroix   Mat_MPIBAIJ    *aij = (Mat_MPIBAIJ*)A->data;
2267a873a8cdSSam Reynolds   PetscInt       m,N,i,*garray = aij->garray;
226847f7623dSRémi Lacroix   PetscInt       ib,jb,bs = A->rmap->bs;
226947f7623dSRémi Lacroix   Mat_SeqBAIJ    *a_aij = (Mat_SeqBAIJ*) aij->A->data;
227047f7623dSRémi Lacroix   MatScalar      *a_val = a_aij->a;
227147f7623dSRémi Lacroix   Mat_SeqBAIJ    *b_aij = (Mat_SeqBAIJ*) aij->B->data;
227247f7623dSRémi Lacroix   MatScalar      *b_val = b_aij->a;
227347f7623dSRémi Lacroix   PetscReal      *work;
227447f7623dSRémi Lacroix 
227547f7623dSRémi Lacroix   PetscFunctionBegin;
22769566063dSJacob Faibussowitsch   PetscCall(MatGetSize(A,&m,&N));
22779566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(N,&work));
2278857cbf51SRichard Tran Mills   if (type == NORM_2) {
227947f7623dSRémi Lacroix     for (i=a_aij->i[0]; i<a_aij->i[aij->A->rmap->n/bs]; i++) {
228047f7623dSRémi Lacroix       for (jb=0; jb<bs; jb++) {
228147f7623dSRémi Lacroix         for (ib=0; ib<bs; ib++) {
228247f7623dSRémi Lacroix           work[A->cmap->rstart + a_aij->j[i] * bs + jb] += PetscAbsScalar(*a_val * *a_val);
228347f7623dSRémi Lacroix           a_val++;
228447f7623dSRémi Lacroix         }
228547f7623dSRémi Lacroix       }
228647f7623dSRémi Lacroix     }
228747f7623dSRémi Lacroix     for (i=b_aij->i[0]; i<b_aij->i[aij->B->rmap->n/bs]; i++) {
228847f7623dSRémi Lacroix       for (jb=0; jb<bs; jb++) {
228947f7623dSRémi Lacroix         for (ib=0; ib<bs; ib++) {
229047f7623dSRémi Lacroix           work[garray[b_aij->j[i]] * bs + jb] += PetscAbsScalar(*b_val * *b_val);
229147f7623dSRémi Lacroix           b_val++;
229247f7623dSRémi Lacroix         }
229347f7623dSRémi Lacroix       }
229447f7623dSRémi Lacroix     }
2295857cbf51SRichard Tran Mills   } else if (type == NORM_1) {
229647f7623dSRémi Lacroix     for (i=a_aij->i[0]; i<a_aij->i[aij->A->rmap->n/bs]; i++) {
229747f7623dSRémi Lacroix       for (jb=0; jb<bs; jb++) {
229847f7623dSRémi Lacroix         for (ib=0; ib<bs; ib++) {
229947f7623dSRémi Lacroix           work[A->cmap->rstart + a_aij->j[i] * bs + jb] += PetscAbsScalar(*a_val);
230047f7623dSRémi Lacroix           a_val++;
230147f7623dSRémi Lacroix         }
230247f7623dSRémi Lacroix       }
230347f7623dSRémi Lacroix     }
230447f7623dSRémi Lacroix     for (i=b_aij->i[0]; i<b_aij->i[aij->B->rmap->n/bs]; i++) {
230547f7623dSRémi Lacroix       for (jb=0; jb<bs; jb++) {
230647f7623dSRémi Lacroix        for (ib=0; ib<bs; ib++) {
230747f7623dSRémi Lacroix           work[garray[b_aij->j[i]] * bs + jb] += PetscAbsScalar(*b_val);
230847f7623dSRémi Lacroix           b_val++;
230947f7623dSRémi Lacroix         }
231047f7623dSRémi Lacroix       }
231147f7623dSRémi Lacroix     }
2312857cbf51SRichard Tran Mills   } else if (type == NORM_INFINITY) {
231347f7623dSRémi Lacroix     for (i=a_aij->i[0]; i<a_aij->i[aij->A->rmap->n/bs]; i++) {
231447f7623dSRémi Lacroix       for (jb=0; jb<bs; jb++) {
231547f7623dSRémi Lacroix         for (ib=0; ib<bs; ib++) {
231647f7623dSRémi Lacroix           int col = A->cmap->rstart + a_aij->j[i] * bs + jb;
231747f7623dSRémi Lacroix           work[col] = PetscMax(PetscAbsScalar(*a_val), work[col]);
231847f7623dSRémi Lacroix           a_val++;
231947f7623dSRémi Lacroix         }
232047f7623dSRémi Lacroix       }
232147f7623dSRémi Lacroix     }
232247f7623dSRémi Lacroix     for (i=b_aij->i[0]; i<b_aij->i[aij->B->rmap->n/bs]; i++) {
232347f7623dSRémi Lacroix       for (jb=0; jb<bs; jb++) {
232447f7623dSRémi Lacroix         for (ib=0; ib<bs; ib++) {
232547f7623dSRémi Lacroix           int col = garray[b_aij->j[i]] * bs + jb;
232647f7623dSRémi Lacroix           work[col] = PetscMax(PetscAbsScalar(*b_val), work[col]);
232747f7623dSRémi Lacroix           b_val++;
232847f7623dSRémi Lacroix         }
232947f7623dSRémi Lacroix       }
233047f7623dSRémi Lacroix     }
2331857cbf51SRichard Tran Mills   } else if (type == REDUCTION_SUM_REALPART || type == REDUCTION_MEAN_REALPART) {
2332a873a8cdSSam Reynolds     for (i=a_aij->i[0]; i<a_aij->i[aij->A->rmap->n/bs]; i++) {
2333a873a8cdSSam Reynolds       for (jb=0; jb<bs; jb++) {
2334a873a8cdSSam Reynolds         for (ib=0; ib<bs; ib++) {
2335857cbf51SRichard Tran Mills           work[A->cmap->rstart + a_aij->j[i] * bs + jb] += PetscRealPart(*a_val);
2336a873a8cdSSam Reynolds           a_val++;
2337a873a8cdSSam Reynolds         }
2338a873a8cdSSam Reynolds       }
2339a873a8cdSSam Reynolds     }
2340a873a8cdSSam Reynolds     for (i=b_aij->i[0]; i<b_aij->i[aij->B->rmap->n/bs]; i++) {
2341a873a8cdSSam Reynolds       for (jb=0; jb<bs; jb++) {
2342a873a8cdSSam Reynolds        for (ib=0; ib<bs; ib++) {
2343857cbf51SRichard Tran Mills           work[garray[b_aij->j[i]] * bs + jb] += PetscRealPart(*b_val);
2344a873a8cdSSam Reynolds           b_val++;
2345a873a8cdSSam Reynolds         }
2346a873a8cdSSam Reynolds       }
2347a873a8cdSSam Reynolds     }
2348857cbf51SRichard Tran Mills   } else if (type == REDUCTION_SUM_IMAGINARYPART || type == REDUCTION_MEAN_IMAGINARYPART) {
2349857cbf51SRichard Tran Mills     for (i=a_aij->i[0]; i<a_aij->i[aij->A->rmap->n/bs]; i++) {
2350857cbf51SRichard Tran Mills       for (jb=0; jb<bs; jb++) {
2351857cbf51SRichard Tran Mills         for (ib=0; ib<bs; ib++) {
2352857cbf51SRichard Tran Mills           work[A->cmap->rstart + a_aij->j[i] * bs + jb] += PetscImaginaryPart(*a_val);
2353857cbf51SRichard Tran Mills           a_val++;
2354857cbf51SRichard Tran Mills         }
2355857cbf51SRichard Tran Mills       }
2356857cbf51SRichard Tran Mills     }
2357857cbf51SRichard Tran Mills     for (i=b_aij->i[0]; i<b_aij->i[aij->B->rmap->n/bs]; i++) {
2358857cbf51SRichard Tran Mills       for (jb=0; jb<bs; jb++) {
2359857cbf51SRichard Tran Mills        for (ib=0; ib<bs; ib++) {
2360857cbf51SRichard Tran Mills           work[garray[b_aij->j[i]] * bs + jb] += PetscImaginaryPart(*b_val);
2361857cbf51SRichard Tran Mills           b_val++;
2362857cbf51SRichard Tran Mills         }
2363857cbf51SRichard Tran Mills       }
2364857cbf51SRichard Tran Mills     }
2365857cbf51SRichard Tran Mills   } else SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ARG_WRONG,"Unknown reduction type");
2366857cbf51SRichard Tran Mills   if (type == NORM_INFINITY) {
23671c2dc1cbSBarry Smith     PetscCall(MPIU_Allreduce(work,reductions,N,MPIU_REAL,MPIU_MAX,PetscObjectComm((PetscObject)A)));
236847f7623dSRémi Lacroix   } else {
23691c2dc1cbSBarry Smith     PetscCall(MPIU_Allreduce(work,reductions,N,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)A)));
237047f7623dSRémi Lacroix   }
23719566063dSJacob Faibussowitsch   PetscCall(PetscFree(work));
2372857cbf51SRichard Tran Mills   if (type == NORM_2) {
2373a873a8cdSSam Reynolds     for (i=0; i<N; i++) reductions[i] = PetscSqrtReal(reductions[i]);
2374857cbf51SRichard Tran Mills   } else if (type == REDUCTION_MEAN_REALPART || type == REDUCTION_MEAN_IMAGINARYPART) {
2375a873a8cdSSam Reynolds     for (i=0; i<N; i++) reductions[i] /= m;
237647f7623dSRémi Lacroix   }
237747f7623dSRémi Lacroix   PetscFunctionReturn(0);
237847f7623dSRémi Lacroix }
237947f7623dSRémi Lacroix 
2380713ccfa9SJed Brown PetscErrorCode MatInvertBlockDiagonal_MPIBAIJ(Mat A,const PetscScalar **values)
2381bbead8a2SBarry Smith {
2382bbead8a2SBarry Smith   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*) A->data;
2383bbead8a2SBarry Smith 
2384bbead8a2SBarry Smith   PetscFunctionBegin;
23859566063dSJacob Faibussowitsch   PetscCall(MatInvertBlockDiagonal(a->A,values));
23867b6c816cSBarry Smith   A->factorerrortype             = a->A->factorerrortype;
23877b6c816cSBarry Smith   A->factorerror_zeropivot_value = a->A->factorerror_zeropivot_value;
23887b6c816cSBarry Smith   A->factorerror_zeropivot_row   = a->A->factorerror_zeropivot_row;
2389bbead8a2SBarry Smith   PetscFunctionReturn(0);
2390bbead8a2SBarry Smith }
2391bbead8a2SBarry Smith 
23927d68702bSBarry Smith PetscErrorCode MatShift_MPIBAIJ(Mat Y,PetscScalar a)
23937d68702bSBarry Smith {
23947d68702bSBarry Smith   Mat_MPIBAIJ    *maij = (Mat_MPIBAIJ*)Y->data;
23956f33a894SBarry Smith   Mat_SeqBAIJ    *aij = (Mat_SeqBAIJ*)maij->A->data;
23967d68702bSBarry Smith 
23977d68702bSBarry Smith   PetscFunctionBegin;
23986f33a894SBarry Smith   if (!Y->preallocated) {
23999566063dSJacob Faibussowitsch     PetscCall(MatMPIBAIJSetPreallocation(Y,Y->rmap->bs,1,NULL,0,NULL));
24006f33a894SBarry Smith   } else if (!aij->nz) {
2401b83222d8SBarry Smith     PetscInt nonew = aij->nonew;
24029566063dSJacob Faibussowitsch     PetscCall(MatSeqBAIJSetPreallocation(maij->A,Y->rmap->bs,1,NULL));
2403b83222d8SBarry Smith     aij->nonew = nonew;
24047d68702bSBarry Smith   }
24059566063dSJacob Faibussowitsch   PetscCall(MatShift_Basic(Y,a));
24067d68702bSBarry Smith   PetscFunctionReturn(0);
24077d68702bSBarry Smith }
24088c7482ecSBarry Smith 
24093b49f96aSBarry Smith PetscErrorCode MatMissingDiagonal_MPIBAIJ(Mat A,PetscBool  *missing,PetscInt *d)
24103b49f96aSBarry Smith {
24113b49f96aSBarry Smith   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)A->data;
24123b49f96aSBarry Smith 
24133b49f96aSBarry Smith   PetscFunctionBegin;
24145f80ce2aSJacob Faibussowitsch   PetscCheck(A->rmap->n == A->cmap->n,PETSC_COMM_SELF,PETSC_ERR_SUP,"Only works for square matrices");
24159566063dSJacob Faibussowitsch   PetscCall(MatMissingDiagonal(a->A,missing,d));
24163b49f96aSBarry Smith   if (d) {
24173b49f96aSBarry Smith     PetscInt rstart;
24189566063dSJacob Faibussowitsch     PetscCall(MatGetOwnershipRange(A,&rstart,NULL));
24193b49f96aSBarry Smith     *d += rstart/A->rmap->bs;
24203b49f96aSBarry Smith 
24213b49f96aSBarry Smith   }
24223b49f96aSBarry Smith   PetscFunctionReturn(0);
24233b49f96aSBarry Smith }
24243b49f96aSBarry Smith 
2425a5b7ff6bSBarry Smith PetscErrorCode  MatGetDiagonalBlock_MPIBAIJ(Mat A,Mat *a)
2426a5b7ff6bSBarry Smith {
2427a5b7ff6bSBarry Smith   PetscFunctionBegin;
2428a5b7ff6bSBarry Smith   *a = ((Mat_MPIBAIJ*)A->data)->A;
2429a5b7ff6bSBarry Smith   PetscFunctionReturn(0);
2430a5b7ff6bSBarry Smith }
2431a5b7ff6bSBarry Smith 
243279bdfe76SSatish Balay /* -------------------------------------------------------------------*/
24333964eb88SJed Brown static struct _MatOps MatOps_Values = {MatSetValues_MPIBAIJ,
2434cc2dc46cSBarry Smith                                        MatGetRow_MPIBAIJ,
2435cc2dc46cSBarry Smith                                        MatRestoreRow_MPIBAIJ,
2436cc2dc46cSBarry Smith                                        MatMult_MPIBAIJ,
243797304618SKris Buschelman                                 /* 4*/ MatMultAdd_MPIBAIJ,
24387c922b88SBarry Smith                                        MatMultTranspose_MPIBAIJ,
24397c922b88SBarry Smith                                        MatMultTransposeAdd_MPIBAIJ,
2440f4259b30SLisandro Dalcin                                        NULL,
2441f4259b30SLisandro Dalcin                                        NULL,
2442f4259b30SLisandro Dalcin                                        NULL,
2443f4259b30SLisandro Dalcin                                 /*10*/ NULL,
2444f4259b30SLisandro Dalcin                                        NULL,
2445f4259b30SLisandro Dalcin                                        NULL,
2446b1a666ecSBarry Smith                                        MatSOR_MPIBAIJ,
2447cc2dc46cSBarry Smith                                        MatTranspose_MPIBAIJ,
244897304618SKris Buschelman                                 /*15*/ MatGetInfo_MPIBAIJ,
24497fc3c18eSBarry Smith                                        MatEqual_MPIBAIJ,
2450cc2dc46cSBarry Smith                                        MatGetDiagonal_MPIBAIJ,
2451cc2dc46cSBarry Smith                                        MatDiagonalScale_MPIBAIJ,
2452cc2dc46cSBarry Smith                                        MatNorm_MPIBAIJ,
245397304618SKris Buschelman                                 /*20*/ MatAssemblyBegin_MPIBAIJ,
2454cc2dc46cSBarry Smith                                        MatAssemblyEnd_MPIBAIJ,
2455cc2dc46cSBarry Smith                                        MatSetOption_MPIBAIJ,
2456cc2dc46cSBarry Smith                                        MatZeroEntries_MPIBAIJ,
2457d519adbfSMatthew Knepley                                 /*24*/ MatZeroRows_MPIBAIJ,
2458f4259b30SLisandro Dalcin                                        NULL,
2459f4259b30SLisandro Dalcin                                        NULL,
2460f4259b30SLisandro Dalcin                                        NULL,
2461f4259b30SLisandro Dalcin                                        NULL,
24624994cf47SJed Brown                                 /*29*/ MatSetUp_MPIBAIJ,
2463f4259b30SLisandro Dalcin                                        NULL,
2464f4259b30SLisandro Dalcin                                        NULL,
2465a5b7ff6bSBarry Smith                                        MatGetDiagonalBlock_MPIBAIJ,
2466f4259b30SLisandro Dalcin                                        NULL,
2467d519adbfSMatthew Knepley                                 /*34*/ MatDuplicate_MPIBAIJ,
2468f4259b30SLisandro Dalcin                                        NULL,
2469f4259b30SLisandro Dalcin                                        NULL,
2470f4259b30SLisandro Dalcin                                        NULL,
2471f4259b30SLisandro Dalcin                                        NULL,
2472d519adbfSMatthew Knepley                                 /*39*/ MatAXPY_MPIBAIJ,
24737dae84e0SHong Zhang                                        MatCreateSubMatrices_MPIBAIJ,
2474cc2dc46cSBarry Smith                                        MatIncreaseOverlap_MPIBAIJ,
2475cc2dc46cSBarry Smith                                        MatGetValues_MPIBAIJ,
24763c896bc6SHong Zhang                                        MatCopy_MPIBAIJ,
2477f4259b30SLisandro Dalcin                                 /*44*/ NULL,
2478cc2dc46cSBarry Smith                                        MatScale_MPIBAIJ,
24797d68702bSBarry Smith                                        MatShift_MPIBAIJ,
2480f4259b30SLisandro Dalcin                                        NULL,
24816f0a72daSMatthew G. Knepley                                        MatZeroRowsColumns_MPIBAIJ,
2482f4259b30SLisandro Dalcin                                 /*49*/ NULL,
2483f4259b30SLisandro Dalcin                                        NULL,
2484f4259b30SLisandro Dalcin                                        NULL,
2485f4259b30SLisandro Dalcin                                        NULL,
2486f4259b30SLisandro Dalcin                                        NULL,
248793dfae19SHong Zhang                                 /*54*/ MatFDColoringCreate_MPIXAIJ,
2488f4259b30SLisandro Dalcin                                        NULL,
2489cc2dc46cSBarry Smith                                        MatSetUnfactored_MPIBAIJ,
249082094794SBarry Smith                                        MatPermute_MPIBAIJ,
2491cc2dc46cSBarry Smith                                        MatSetValuesBlocked_MPIBAIJ,
24927dae84e0SHong Zhang                                 /*59*/ MatCreateSubMatrix_MPIBAIJ,
2493f14a1c24SBarry Smith                                        MatDestroy_MPIBAIJ,
2494f14a1c24SBarry Smith                                        MatView_MPIBAIJ,
2495f4259b30SLisandro Dalcin                                        NULL,
2496f4259b30SLisandro Dalcin                                        NULL,
2497f4259b30SLisandro Dalcin                                 /*64*/ NULL,
2498f4259b30SLisandro Dalcin                                        NULL,
2499f4259b30SLisandro Dalcin                                        NULL,
2500f4259b30SLisandro Dalcin                                        NULL,
2501f4259b30SLisandro Dalcin                                        NULL,
2502d519adbfSMatthew Knepley                                 /*69*/ MatGetRowMaxAbs_MPIBAIJ,
2503f4259b30SLisandro Dalcin                                        NULL,
2504f4259b30SLisandro Dalcin                                        NULL,
2505f4259b30SLisandro Dalcin                                        NULL,
2506f4259b30SLisandro Dalcin                                        NULL,
2507f4259b30SLisandro Dalcin                                 /*74*/ NULL,
2508f6d58c54SBarry Smith                                        MatFDColoringApply_BAIJ,
2509f4259b30SLisandro Dalcin                                        NULL,
2510f4259b30SLisandro Dalcin                                        NULL,
2511f4259b30SLisandro Dalcin                                        NULL,
2512f4259b30SLisandro Dalcin                                 /*79*/ NULL,
2513f4259b30SLisandro Dalcin                                        NULL,
2514f4259b30SLisandro Dalcin                                        NULL,
2515f4259b30SLisandro Dalcin                                        NULL,
25165bba2384SShri Abhyankar                                        MatLoad_MPIBAIJ,
2517f4259b30SLisandro Dalcin                                 /*84*/ NULL,
2518f4259b30SLisandro Dalcin                                        NULL,
2519f4259b30SLisandro Dalcin                                        NULL,
2520f4259b30SLisandro Dalcin                                        NULL,
2521f4259b30SLisandro Dalcin                                        NULL,
2522f4259b30SLisandro Dalcin                                 /*89*/ NULL,
2523f4259b30SLisandro Dalcin                                        NULL,
2524f4259b30SLisandro Dalcin                                        NULL,
2525f4259b30SLisandro Dalcin                                        NULL,
2526f4259b30SLisandro Dalcin                                        NULL,
2527f4259b30SLisandro Dalcin                                 /*94*/ NULL,
2528f4259b30SLisandro Dalcin                                        NULL,
2529f4259b30SLisandro Dalcin                                        NULL,
2530f4259b30SLisandro Dalcin                                        NULL,
2531f4259b30SLisandro Dalcin                                        NULL,
2532f4259b30SLisandro Dalcin                                 /*99*/ NULL,
2533f4259b30SLisandro Dalcin                                        NULL,
2534f4259b30SLisandro Dalcin                                        NULL,
25352726fb6dSPierre Jolivet                                        MatConjugate_MPIBAIJ,
2536f4259b30SLisandro Dalcin                                        NULL,
2537f4259b30SLisandro Dalcin                                 /*104*/NULL,
253899cafbc1SBarry Smith                                        MatRealPart_MPIBAIJ,
25398c7482ecSBarry Smith                                        MatImaginaryPart_MPIBAIJ,
2540f4259b30SLisandro Dalcin                                        NULL,
2541f4259b30SLisandro Dalcin                                        NULL,
2542f4259b30SLisandro Dalcin                                 /*109*/NULL,
2543f4259b30SLisandro Dalcin                                        NULL,
2544f4259b30SLisandro Dalcin                                        NULL,
2545f4259b30SLisandro Dalcin                                        NULL,
25463b49f96aSBarry Smith                                        MatMissingDiagonal_MPIBAIJ,
2547d1adec66SJed Brown                                 /*114*/MatGetSeqNonzeroStructure_MPIBAIJ,
2548f4259b30SLisandro Dalcin                                        NULL,
25494683f7a4SShri Abhyankar                                        MatGetGhosts_MPIBAIJ,
2550f4259b30SLisandro Dalcin                                        NULL,
2551f4259b30SLisandro Dalcin                                        NULL,
2552f4259b30SLisandro Dalcin                                 /*119*/NULL,
2553f4259b30SLisandro Dalcin                                        NULL,
2554f4259b30SLisandro Dalcin                                        NULL,
2555f4259b30SLisandro Dalcin                                        NULL,
2556e8271787SHong Zhang                                        MatGetMultiProcBlock_MPIBAIJ,
2557f4259b30SLisandro Dalcin                                 /*124*/NULL,
2558a873a8cdSSam Reynolds                                        MatGetColumnReductions_MPIBAIJ,
25593964eb88SJed Brown                                        MatInvertBlockDiagonal_MPIBAIJ,
2560f4259b30SLisandro Dalcin                                        NULL,
2561f4259b30SLisandro Dalcin                                        NULL,
2562f4259b30SLisandro Dalcin                                 /*129*/NULL,
2563f4259b30SLisandro Dalcin                                        NULL,
2564f4259b30SLisandro Dalcin                                        NULL,
2565f4259b30SLisandro Dalcin                                        NULL,
2566f4259b30SLisandro Dalcin                                        NULL,
2567f4259b30SLisandro Dalcin                                 /*134*/NULL,
2568f4259b30SLisandro Dalcin                                        NULL,
2569f4259b30SLisandro Dalcin                                        NULL,
2570f4259b30SLisandro Dalcin                                        NULL,
2571f4259b30SLisandro Dalcin                                        NULL,
257246533700Sstefano_zampini                                 /*139*/MatSetBlockSizes_Default,
2573f4259b30SLisandro Dalcin                                        NULL,
2574f4259b30SLisandro Dalcin                                        NULL,
2575bdf6f3fcSHong Zhang                                        MatFDColoringSetUp_MPIXAIJ,
2576f4259b30SLisandro Dalcin                                        NULL,
2577d70f29a3SPierre Jolivet                                 /*144*/MatCreateMPIMatConcatenateSeqMat_MPIBAIJ,
2578d70f29a3SPierre Jolivet                                        NULL,
2579d70f29a3SPierre Jolivet                                        NULL,
258099a7f59eSMark Adams                                        NULL,
258199a7f59eSMark Adams                                        NULL,
25827fb60732SBarry Smith                                        NULL,
25837fb60732SBarry Smith                                 /*150*/NULL
25848c7482ecSBarry Smith };
258579bdfe76SSatish Balay 
2586cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIBAIJ_MPISBAIJ(Mat,MatType,MatReuse,Mat*);
2587c9225affSStefano Zampini PETSC_INTERN PetscErrorCode MatConvert_XAIJ_IS(Mat,MatType,MatReuse,Mat*);
2588d94109b8SHong Zhang 
2589cf12db73SBarry Smith PetscErrorCode MatMPIBAIJSetPreallocationCSR_MPIBAIJ(Mat B,PetscInt bs,const PetscInt ii[],const PetscInt jj[],const PetscScalar V[])
2590aac34f13SBarry Smith {
2591b8d659d7SLisandro Dalcin   PetscInt       m,rstart,cstart,cend;
2592f4259b30SLisandro Dalcin   PetscInt       i,j,dlen,olen,nz,nz_max=0,*d_nnz=NULL,*o_nnz=NULL;
2593f4259b30SLisandro Dalcin   const PetscInt *JJ    =NULL;
2594f4259b30SLisandro Dalcin   PetscScalar    *values=NULL;
2595d47bf9aaSJed Brown   PetscBool      roworiented = ((Mat_MPIBAIJ*)B->data)->roworiented;
25963bd0feecSPierre Jolivet   PetscBool      nooffprocentries;
2597aac34f13SBarry Smith 
2598aac34f13SBarry Smith   PetscFunctionBegin;
25999566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetBlockSize(B->rmap,bs));
26009566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetBlockSize(B->cmap,bs));
26019566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(B->rmap));
26029566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(B->cmap));
26039566063dSJacob Faibussowitsch   PetscCall(PetscLayoutGetBlockSize(B->rmap,&bs));
2604d0f46423SBarry Smith   m      = B->rmap->n/bs;
2605d0f46423SBarry Smith   rstart = B->rmap->rstart/bs;
2606d0f46423SBarry Smith   cstart = B->cmap->rstart/bs;
2607d0f46423SBarry Smith   cend   = B->cmap->rend/bs;
2608b8d659d7SLisandro Dalcin 
26095f80ce2aSJacob Faibussowitsch   PetscCheck(!ii[0],PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"ii[0] must be 0 but it is %" PetscInt_FMT,ii[0]);
26109566063dSJacob Faibussowitsch   PetscCall(PetscMalloc2(m,&d_nnz,m,&o_nnz));
2611aac34f13SBarry Smith   for (i=0; i<m; i++) {
2612cf12db73SBarry Smith     nz = ii[i+1] - ii[i];
26135f80ce2aSJacob Faibussowitsch     PetscCheck(nz >= 0,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Local row %" PetscInt_FMT " has a negative number of columns %" PetscInt_FMT,i,nz);
2614b8d659d7SLisandro Dalcin     nz_max = PetscMax(nz_max,nz);
261537cd3c0dSBarry Smith     dlen   = 0;
261637cd3c0dSBarry Smith     olen   = 0;
2617cf12db73SBarry Smith     JJ     = jj + ii[i];
2618b8d659d7SLisandro Dalcin     for (j=0; j<nz; j++) {
261937cd3c0dSBarry Smith       if (*JJ < cstart || *JJ >= cend) olen++;
262037cd3c0dSBarry Smith       else dlen++;
2621aac34f13SBarry Smith       JJ++;
2622aac34f13SBarry Smith     }
262337cd3c0dSBarry Smith     d_nnz[i] = dlen;
262437cd3c0dSBarry Smith     o_nnz[i] = olen;
2625aac34f13SBarry Smith   }
26269566063dSJacob Faibussowitsch   PetscCall(MatMPIBAIJSetPreallocation(B,bs,0,d_nnz,0,o_nnz));
26279566063dSJacob Faibussowitsch   PetscCall(PetscFree2(d_nnz,o_nnz));
2628aac34f13SBarry Smith 
2629b8d659d7SLisandro Dalcin   values = (PetscScalar*)V;
2630b8d659d7SLisandro Dalcin   if (!values) {
26319566063dSJacob Faibussowitsch     PetscCall(PetscCalloc1(bs*bs*nz_max,&values));
2632b8d659d7SLisandro Dalcin   }
2633b8d659d7SLisandro Dalcin   for (i=0; i<m; i++) {
2634b8d659d7SLisandro Dalcin     PetscInt          row    = i + rstart;
2635cf12db73SBarry Smith     PetscInt          ncols  = ii[i+1] - ii[i];
2636cf12db73SBarry Smith     const PetscInt    *icols = jj + ii[i];
2637bb80cfbbSStefano Zampini     if (bs == 1 || !roworiented) {         /* block ordering matches the non-nested layout of MatSetValues so we can insert entire rows */
2638cf12db73SBarry Smith       const PetscScalar *svals = values + (V ? (bs*bs*ii[i]) : 0);
26399566063dSJacob Faibussowitsch       PetscCall(MatSetValuesBlocked_MPIBAIJ(B,1,&row,ncols,icols,svals,INSERT_VALUES));
26403adadaf3SJed Brown     } else {                    /* block ordering does not match so we can only insert one block at a time. */
26413adadaf3SJed Brown       PetscInt j;
26423adadaf3SJed Brown       for (j=0; j<ncols; j++) {
26433adadaf3SJed Brown         const PetscScalar *svals = values + (V ? (bs*bs*(ii[i]+j)) : 0);
26449566063dSJacob Faibussowitsch         PetscCall(MatSetValuesBlocked_MPIBAIJ(B,1,&row,1,&icols[j],svals,INSERT_VALUES));
26453adadaf3SJed Brown       }
26463adadaf3SJed Brown     }
2647aac34f13SBarry Smith   }
2648aac34f13SBarry Smith 
26499566063dSJacob Faibussowitsch   if (!V) PetscCall(PetscFree(values));
26503bd0feecSPierre Jolivet   nooffprocentries    = B->nooffprocentries;
26513bd0feecSPierre Jolivet   B->nooffprocentries = PETSC_TRUE;
26529566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY));
26539566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY));
26543bd0feecSPierre Jolivet   B->nooffprocentries = nooffprocentries;
26553bd0feecSPierre Jolivet 
26569566063dSJacob Faibussowitsch   PetscCall(MatSetOption(B,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_TRUE));
2657aac34f13SBarry Smith   PetscFunctionReturn(0);
2658aac34f13SBarry Smith }
2659aac34f13SBarry Smith 
2660aac34f13SBarry Smith /*@C
2661664954b6SBarry Smith    MatMPIBAIJSetPreallocationCSR - Creates a sparse parallel matrix in BAIJ format using the given nonzero structure and (optional) numerical values
2662aac34f13SBarry Smith 
2663d083f849SBarry Smith    Collective
2664aac34f13SBarry Smith 
2665aac34f13SBarry Smith    Input Parameters:
26661c4f3114SJed Brown +  B - the matrix
2667dfb205c3SBarry Smith .  bs - the block size
2668aac34f13SBarry Smith .  i - the indices into j for the start of each local row (starts with zero)
2669aac34f13SBarry Smith .  j - the column indices for each local row (starts with zero) these must be sorted for each row
2670aac34f13SBarry Smith -  v - optional values in the matrix
2671aac34f13SBarry Smith 
2672664954b6SBarry Smith    Level: advanced
2673aac34f13SBarry Smith 
267495452b02SPatrick Sanan    Notes:
267595452b02SPatrick Sanan     The order of the entries in values is specified by the MatOption MAT_ROW_ORIENTED.  For example, C programs
26763adadaf3SJed Brown    may want to use the default MAT_ROW_ORIENTED=PETSC_TRUE and use an array v[nnz][bs][bs] where the second index is
26773adadaf3SJed Brown    over rows within a block and the last index is over columns within a block row.  Fortran programs will likely set
26783adadaf3SJed Brown    MAT_ROW_ORIENTED=PETSC_FALSE and use a Fortran array v(bs,bs,nnz) in which the first index is over rows within a
26793adadaf3SJed Brown    block column and the second index is over columns within a block.
26803adadaf3SJed Brown 
2681664954b6SBarry Smith    Though this routine has Preallocation() in the name it also sets the exact nonzero locations of the matrix entries and usually the numerical values as well
2682664954b6SBarry Smith 
2683db781477SPatrick Sanan .seealso: `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIBAIJSetPreallocation()`, `MatCreateAIJ()`, `MPIAIJ`, `MatCreateMPIBAIJWithArrays()`, `MPIBAIJ`
2684aac34f13SBarry Smith @*/
26857087cfbeSBarry Smith PetscErrorCode  MatMPIBAIJSetPreallocationCSR(Mat B,PetscInt bs,const PetscInt i[],const PetscInt j[], const PetscScalar v[])
2686aac34f13SBarry Smith {
2687aac34f13SBarry Smith   PetscFunctionBegin;
26886ba663aaSJed Brown   PetscValidHeaderSpecific(B,MAT_CLASSID,1);
26896ba663aaSJed Brown   PetscValidType(B,1);
26906ba663aaSJed Brown   PetscValidLogicalCollectiveInt(B,bs,2);
2691cac4c232SBarry Smith   PetscTryMethod(B,"MatMPIBAIJSetPreallocationCSR_C",(Mat,PetscInt,const PetscInt[],const PetscInt[],const PetscScalar[]),(B,bs,i,j,v));
2692aac34f13SBarry Smith   PetscFunctionReturn(0);
2693aac34f13SBarry Smith }
2694aac34f13SBarry Smith 
2695b2573a8aSBarry Smith PetscErrorCode  MatMPIBAIJSetPreallocation_MPIBAIJ(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt *d_nnz,PetscInt o_nz,const PetscInt *o_nnz)
2696a23d5eceSKris Buschelman {
2697a23d5eceSKris Buschelman   Mat_MPIBAIJ    *b;
2698535b19f3SBarry Smith   PetscInt       i;
26995d2a9ed1SStefano Zampini   PetscMPIInt    size;
2700a23d5eceSKris Buschelman 
2701a23d5eceSKris Buschelman   PetscFunctionBegin;
27029566063dSJacob Faibussowitsch   PetscCall(MatSetBlockSize(B,PetscAbs(bs)));
27039566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(B->rmap));
27049566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(B->cmap));
27059566063dSJacob Faibussowitsch   PetscCall(PetscLayoutGetBlockSize(B->rmap,&bs));
2706899cda47SBarry Smith 
2707a23d5eceSKris Buschelman   if (d_nnz) {
2708d0f46423SBarry Smith     for (i=0; i<B->rmap->n/bs; i++) {
27095f80ce2aSJacob Faibussowitsch       PetscCheck(d_nnz[i] >= 0,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"d_nnz cannot be less than -1: local row %" PetscInt_FMT " value %" PetscInt_FMT,i,d_nnz[i]);
2710a23d5eceSKris Buschelman     }
2711a23d5eceSKris Buschelman   }
2712a23d5eceSKris Buschelman   if (o_nnz) {
2713d0f46423SBarry Smith     for (i=0; i<B->rmap->n/bs; i++) {
27145f80ce2aSJacob Faibussowitsch       PetscCheck(o_nnz[i] >= 0,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"o_nnz cannot be less than -1: local row %" PetscInt_FMT " value %" PetscInt_FMT,i,o_nnz[i]);
2715a23d5eceSKris Buschelman     }
2716a23d5eceSKris Buschelman   }
2717a23d5eceSKris Buschelman 
2718a23d5eceSKris Buschelman   b      = (Mat_MPIBAIJ*)B->data;
2719a23d5eceSKris Buschelman   b->bs2 = bs*bs;
2720d0f46423SBarry Smith   b->mbs = B->rmap->n/bs;
2721d0f46423SBarry Smith   b->nbs = B->cmap->n/bs;
2722d0f46423SBarry Smith   b->Mbs = B->rmap->N/bs;
2723d0f46423SBarry Smith   b->Nbs = B->cmap->N/bs;
2724a23d5eceSKris Buschelman 
2725a23d5eceSKris Buschelman   for (i=0; i<=b->size; i++) {
2726d0f46423SBarry Smith     b->rangebs[i] = B->rmap->range[i]/bs;
2727a23d5eceSKris Buschelman   }
2728d0f46423SBarry Smith   b->rstartbs = B->rmap->rstart/bs;
2729d0f46423SBarry Smith   b->rendbs   = B->rmap->rend/bs;
2730d0f46423SBarry Smith   b->cstartbs = B->cmap->rstart/bs;
2731d0f46423SBarry Smith   b->cendbs   = B->cmap->rend/bs;
2732a23d5eceSKris Buschelman 
2733cb7b82ddSBarry Smith #if defined(PETSC_USE_CTABLE)
27349566063dSJacob Faibussowitsch   PetscCall(PetscTableDestroy(&b->colmap));
2735cb7b82ddSBarry Smith #else
27369566063dSJacob Faibussowitsch   PetscCall(PetscFree(b->colmap));
2737cb7b82ddSBarry Smith #endif
27389566063dSJacob Faibussowitsch   PetscCall(PetscFree(b->garray));
27399566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&b->lvec));
27409566063dSJacob Faibussowitsch   PetscCall(VecScatterDestroy(&b->Mvctx));
2741cb7b82ddSBarry Smith 
2742cb7b82ddSBarry Smith   /* Because the B will have been resized we simply destroy it and create a new one each time */
27439566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)B),&size));
27449566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&b->B));
27459566063dSJacob Faibussowitsch   PetscCall(MatCreate(PETSC_COMM_SELF,&b->B));
27469566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(b->B,B->rmap->n,size > 1 ? B->cmap->N : 0,B->rmap->n,size > 1 ? B->cmap->N : 0));
27479566063dSJacob Faibussowitsch   PetscCall(MatSetType(b->B,MATSEQBAIJ));
27489566063dSJacob Faibussowitsch   PetscCall(PetscLogObjectParent((PetscObject)B,(PetscObject)b->B));
2749cb7b82ddSBarry Smith 
2750526dfc15SBarry Smith   if (!B->preallocated) {
27519566063dSJacob Faibussowitsch     PetscCall(MatCreate(PETSC_COMM_SELF,&b->A));
27529566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(b->A,B->rmap->n,B->cmap->n,B->rmap->n,B->cmap->n));
27539566063dSJacob Faibussowitsch     PetscCall(MatSetType(b->A,MATSEQBAIJ));
27549566063dSJacob Faibussowitsch     PetscCall(PetscLogObjectParent((PetscObject)B,(PetscObject)b->A));
27559566063dSJacob Faibussowitsch     PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)B),bs,&B->bstash));
2756526dfc15SBarry Smith   }
2757a23d5eceSKris Buschelman 
27589566063dSJacob Faibussowitsch   PetscCall(MatSeqBAIJSetPreallocation(b->A,bs,d_nz,d_nnz));
27599566063dSJacob Faibussowitsch   PetscCall(MatSeqBAIJSetPreallocation(b->B,bs,o_nz,o_nnz));
2760526dfc15SBarry Smith   B->preallocated  = PETSC_TRUE;
2761cb7b82ddSBarry Smith   B->was_assembled = PETSC_FALSE;
2762cb7b82ddSBarry Smith   B->assembled     = PETSC_FALSE;
2763a23d5eceSKris Buschelman   PetscFunctionReturn(0);
2764a23d5eceSKris Buschelman }
2765a23d5eceSKris Buschelman 
27667087cfbeSBarry Smith extern PetscErrorCode  MatDiagonalScaleLocal_MPIBAIJ(Mat,Vec);
27677087cfbeSBarry Smith extern PetscErrorCode  MatSetHashTableFactor_MPIBAIJ(Mat,PetscReal);
27685bf65638SKris Buschelman 
2769cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIBAIJ_MPIAdj(Mat B, MatType newtype,MatReuse reuse,Mat *adj)
277082094794SBarry Smith {
277182094794SBarry Smith   Mat_MPIBAIJ    *b = (Mat_MPIBAIJ*)B->data;
277282094794SBarry Smith   Mat_SeqBAIJ    *d  = (Mat_SeqBAIJ*) b->A->data,*o = (Mat_SeqBAIJ*) b->B->data;
277382094794SBarry Smith   PetscInt       M   = B->rmap->n/B->rmap->bs,i,*ii,*jj,cnt,j,k,rstart = B->rmap->rstart/B->rmap->bs;
277482094794SBarry Smith   const PetscInt *id = d->i, *jd = d->j, *io = o->i, *jo = o->j, *garray = b->garray;
277582094794SBarry Smith 
277682094794SBarry Smith   PetscFunctionBegin;
27779566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(M+1,&ii));
277882094794SBarry Smith   ii[0] = 0;
277982094794SBarry Smith   for (i=0; i<M; i++) {
278008401ef6SPierre Jolivet     PetscCheck((id[i+1] - id[i]) >= 0,PETSC_COMM_SELF,PETSC_ERR_PLIB,"Indices wrong %" PetscInt_FMT " %" PetscInt_FMT " %" PetscInt_FMT,i,id[i],id[i+1]);
278108401ef6SPierre Jolivet     PetscCheck((io[i+1] - io[i]) >= 0,PETSC_COMM_SELF,PETSC_ERR_PLIB,"Indices wrong %" PetscInt_FMT " %" PetscInt_FMT " %" PetscInt_FMT,i,io[i],io[i+1]);
278282094794SBarry Smith     ii[i+1] = ii[i] + id[i+1] - id[i] + io[i+1] - io[i];
27835ee9ba1cSJed Brown     /* remove one from count of matrix has diagonal */
27845ee9ba1cSJed Brown     for (j=id[i]; j<id[i+1]; j++) {
27855ee9ba1cSJed Brown       if (jd[j] == i) {ii[i+1]--;break;}
27865ee9ba1cSJed Brown     }
278782094794SBarry Smith   }
27889566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(ii[M],&jj));
278982094794SBarry Smith   cnt  = 0;
279082094794SBarry Smith   for (i=0; i<M; i++) {
279182094794SBarry Smith     for (j=io[i]; j<io[i+1]; j++) {
279282094794SBarry Smith       if (garray[jo[j]] > rstart) break;
279382094794SBarry Smith       jj[cnt++] = garray[jo[j]];
279482094794SBarry Smith     }
279582094794SBarry Smith     for (k=id[i]; k<id[i+1]; k++) {
27965ee9ba1cSJed Brown       if (jd[k] != i) {
279782094794SBarry Smith         jj[cnt++] = rstart + jd[k];
279882094794SBarry Smith       }
27995ee9ba1cSJed Brown     }
280082094794SBarry Smith     for (; j<io[i+1]; j++) {
280182094794SBarry Smith       jj[cnt++] = garray[jo[j]];
280282094794SBarry Smith     }
280382094794SBarry Smith   }
28049566063dSJacob Faibussowitsch   PetscCall(MatCreateMPIAdj(PetscObjectComm((PetscObject)B),M,B->cmap->N/B->rmap->bs,ii,jj,NULL,adj));
280582094794SBarry Smith   PetscFunctionReturn(0);
280682094794SBarry Smith }
280782094794SBarry Smith 
2808c6db04a5SJed Brown #include <../src/mat/impls/aij/mpi/mpiaij.h>
280962471d69SBarry Smith 
2810cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_SeqBAIJ_SeqAIJ(Mat,MatType,MatReuse,Mat*);
2811b2573a8aSBarry Smith 
2812cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIBAIJ_MPIAIJ(Mat A,MatType newtype,MatReuse reuse,Mat *newmat)
281362471d69SBarry Smith {
281462471d69SBarry Smith   Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data;
281585a69837SSatish Balay   Mat_MPIAIJ  *b;
28165f80ce2aSJacob Faibussowitsch   Mat         B;
281762471d69SBarry Smith 
281862471d69SBarry Smith   PetscFunctionBegin;
28195f80ce2aSJacob Faibussowitsch   PetscCheck(A->assembled,PetscObjectComm((PetscObject)A),PETSC_ERR_SUP,"Matrix must be assembled");
282062471d69SBarry Smith 
28210f6d62edSLisandro Dalcin   if (reuse == MAT_REUSE_MATRIX) {
28220f6d62edSLisandro Dalcin     B = *newmat;
28230f6d62edSLisandro Dalcin   } else {
28249566063dSJacob Faibussowitsch     PetscCall(MatCreate(PetscObjectComm((PetscObject)A),&B));
28259566063dSJacob Faibussowitsch     PetscCall(MatSetType(B,MATMPIAIJ));
28269566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(B,A->rmap->n,A->cmap->n,A->rmap->N,A->cmap->N));
28279566063dSJacob Faibussowitsch     PetscCall(MatSetBlockSizes(B,A->rmap->bs,A->cmap->bs));
28289566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJSetPreallocation(B,0,NULL));
28299566063dSJacob Faibussowitsch     PetscCall(MatMPIAIJSetPreallocation(B,0,NULL,0,NULL));
28300f6d62edSLisandro Dalcin   }
283162471d69SBarry Smith   b = (Mat_MPIAIJ*) B->data;
283262471d69SBarry Smith 
28330f6d62edSLisandro Dalcin   if (reuse == MAT_REUSE_MATRIX) {
28349566063dSJacob Faibussowitsch     PetscCall(MatConvert_SeqBAIJ_SeqAIJ(a->A, MATSEQAIJ, MAT_REUSE_MATRIX, &b->A));
28359566063dSJacob Faibussowitsch     PetscCall(MatConvert_SeqBAIJ_SeqAIJ(a->B, MATSEQAIJ, MAT_REUSE_MATRIX, &b->B));
28360f6d62edSLisandro Dalcin   } else {
28379566063dSJacob Faibussowitsch     PetscCall(MatDestroy(&b->A));
28389566063dSJacob Faibussowitsch     PetscCall(MatDestroy(&b->B));
28399566063dSJacob Faibussowitsch     PetscCall(MatDisAssemble_MPIBAIJ(A));
28409566063dSJacob Faibussowitsch     PetscCall(MatConvert_SeqBAIJ_SeqAIJ(a->A, MATSEQAIJ, MAT_INITIAL_MATRIX, &b->A));
28419566063dSJacob Faibussowitsch     PetscCall(MatConvert_SeqBAIJ_SeqAIJ(a->B, MATSEQAIJ, MAT_INITIAL_MATRIX, &b->B));
28429566063dSJacob Faibussowitsch     PetscCall(MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY));
28439566063dSJacob Faibussowitsch     PetscCall(MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY));
28440f6d62edSLisandro Dalcin   }
28459566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY));
28469566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY));
28470f6d62edSLisandro Dalcin 
2848511c6705SHong Zhang   if (reuse == MAT_INPLACE_MATRIX) {
28499566063dSJacob Faibussowitsch     PetscCall(MatHeaderReplace(A,&B));
285062471d69SBarry Smith   } else {
285162471d69SBarry Smith    *newmat = B;
285262471d69SBarry Smith   }
285362471d69SBarry Smith   PetscFunctionReturn(0);
285462471d69SBarry Smith }
285562471d69SBarry Smith 
28560bad9183SKris Buschelman /*MC
2857fafad747SKris Buschelman    MATMPIBAIJ - MATMPIBAIJ = "mpibaij" - A matrix type to be used for distributed block sparse matrices.
28580bad9183SKris Buschelman 
28590bad9183SKris Buschelman    Options Database Keys:
28608c07d4e3SBarry Smith + -mat_type mpibaij - sets the matrix type to "mpibaij" during a call to MatSetFromOptions()
28618c07d4e3SBarry Smith . -mat_block_size <bs> - set the blocksize used to store the matrix
28626679dcc1SBarry Smith . -mat_baij_mult_version version - indicate the version of the matrix-vector product to use  (0 often indicates using BLAS)
286367b8a455SSatish Balay - -mat_use_hash_table <fact> - set hash table factor
28640bad9183SKris Buschelman 
28650bad9183SKris Buschelman    Level: beginner
28660cd7f59aSBarry Smith 
28670cd7f59aSBarry Smith    Notes:
28680cd7f59aSBarry Smith     MatSetOptions(,MAT_STRUCTURE_ONLY,PETSC_TRUE) may be called for this matrix type. In this no
28690cd7f59aSBarry Smith     space is allocated for the nonzero entries and any entries passed with MatSetValues() are ignored
28700bad9183SKris Buschelman 
2871db781477SPatrick Sanan .seealso: `MatCreateBAIJ`
28720bad9183SKris Buschelman M*/
28730bad9183SKris Buschelman 
2874cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIBAIJ_MPIBSTRM(Mat,MatType,MatReuse,Mat*);
2875c0cdd4a1SDahai Guo 
28768cc058d9SJed Brown PETSC_EXTERN PetscErrorCode MatCreate_MPIBAIJ(Mat B)
2877273d9f13SBarry Smith {
2878273d9f13SBarry Smith   Mat_MPIBAIJ    *b;
287994ae4db5SBarry Smith   PetscBool      flg = PETSC_FALSE;
2880273d9f13SBarry Smith 
2881273d9f13SBarry Smith   PetscFunctionBegin;
28829566063dSJacob Faibussowitsch   PetscCall(PetscNewLog(B,&b));
288382502324SSatish Balay   B->data = (void*)b;
288482502324SSatish Balay 
28859566063dSJacob Faibussowitsch   PetscCall(PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps)));
2886273d9f13SBarry Smith   B->assembled = PETSC_FALSE;
2887273d9f13SBarry Smith 
2888273d9f13SBarry Smith   B->insertmode = NOT_SET_VALUES;
28899566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)B),&b->rank));
28909566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)B),&b->size));
2891273d9f13SBarry Smith 
2892273d9f13SBarry Smith   /* build local table of row and column ownerships */
28939566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(b->size+1,&b->rangebs));
2894273d9f13SBarry Smith 
2895273d9f13SBarry Smith   /* build cache for off array entries formed */
28969566063dSJacob Faibussowitsch   PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)B),1,&B->stash));
289726fbe8dcSKarl Rupp 
2898273d9f13SBarry Smith   b->donotstash  = PETSC_FALSE;
28990298fd71SBarry Smith   b->colmap      = NULL;
29000298fd71SBarry Smith   b->garray      = NULL;
2901273d9f13SBarry Smith   b->roworiented = PETSC_TRUE;
2902273d9f13SBarry Smith 
2903273d9f13SBarry Smith   /* stuff used in block assembly */
2904f4259b30SLisandro Dalcin   b->barray = NULL;
2905273d9f13SBarry Smith 
2906273d9f13SBarry Smith   /* stuff used for matrix vector multiply */
2907f4259b30SLisandro Dalcin   b->lvec  = NULL;
2908f4259b30SLisandro Dalcin   b->Mvctx = NULL;
2909273d9f13SBarry Smith 
2910273d9f13SBarry Smith   /* stuff for MatGetRow() */
2911f4259b30SLisandro Dalcin   b->rowindices   = NULL;
2912f4259b30SLisandro Dalcin   b->rowvalues    = NULL;
2913273d9f13SBarry Smith   b->getrowactive = PETSC_FALSE;
2914273d9f13SBarry Smith 
2915273d9f13SBarry Smith   /* hash table stuff */
2916f4259b30SLisandro Dalcin   b->ht           = NULL;
2917f4259b30SLisandro Dalcin   b->hd           = NULL;
2918273d9f13SBarry Smith   b->ht_size      = 0;
2919273d9f13SBarry Smith   b->ht_flag      = PETSC_FALSE;
2920273d9f13SBarry Smith   b->ht_fact      = 0;
2921273d9f13SBarry Smith   b->ht_total_ct  = 0;
2922273d9f13SBarry Smith   b->ht_insert_ct = 0;
2923273d9f13SBarry Smith 
29247dae84e0SHong Zhang   /* stuff for MatCreateSubMatrices_MPIBAIJ_local() */
29257a868f3eSHong Zhang   b->ijonly = PETSC_FALSE;
29267a868f3eSHong Zhang 
29279566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpibaij_mpiadj_C",MatConvert_MPIBAIJ_MPIAdj));
29289566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpibaij_mpiaij_C",MatConvert_MPIBAIJ_MPIAIJ));
29299566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpibaij_mpisbaij_C",MatConvert_MPIBAIJ_MPISBAIJ));
29307ea3e4caSstefano_zampini #if defined(PETSC_HAVE_HYPRE)
29319566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpibaij_hypre_C",MatConvert_AIJ_HYPRE));
29327ea3e4caSstefano_zampini #endif
29339566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatStoreValues_C",MatStoreValues_MPIBAIJ));
29349566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatRetrieveValues_C",MatRetrieveValues_MPIBAIJ));
29359566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatMPIBAIJSetPreallocation_C",MatMPIBAIJSetPreallocation_MPIBAIJ));
29369566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatMPIBAIJSetPreallocationCSR_C",MatMPIBAIJSetPreallocationCSR_MPIBAIJ));
29379566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatDiagonalScaleLocal_C",MatDiagonalScaleLocal_MPIBAIJ));
29389566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatSetHashTableFactor_C",MatSetHashTableFactor_MPIBAIJ));
29399566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpibaij_is_C",MatConvert_XAIJ_IS));
29409566063dSJacob Faibussowitsch   PetscCall(PetscObjectChangeTypeName((PetscObject)B,MATMPIBAIJ));
294194ae4db5SBarry Smith 
2942d0609cedSBarry Smith   PetscOptionsBegin(PetscObjectComm((PetscObject)B),NULL,"Options for loading MPIBAIJ matrix 1","Mat");
29439566063dSJacob Faibussowitsch   PetscCall(PetscOptionsName("-mat_use_hash_table","Use hash table to save time in constructing matrix","MatSetOption",&flg));
294494ae4db5SBarry Smith   if (flg) {
294594ae4db5SBarry Smith     PetscReal fact = 1.39;
29469566063dSJacob Faibussowitsch     PetscCall(MatSetOption(B,MAT_USE_HASH_TABLE,PETSC_TRUE));
29479566063dSJacob Faibussowitsch     PetscCall(PetscOptionsReal("-mat_use_hash_table","Use hash table factor","MatMPIBAIJSetHashTableFactor",fact,&fact,NULL));
294894ae4db5SBarry Smith     if (fact <= 1.0) fact = 1.39;
29499566063dSJacob Faibussowitsch     PetscCall(MatMPIBAIJSetHashTableFactor(B,fact));
29509566063dSJacob Faibussowitsch     PetscCall(PetscInfo(B,"Hash table Factor used %5.2g\n",(double)fact));
295194ae4db5SBarry Smith   }
2952d0609cedSBarry Smith   PetscOptionsEnd();
2953273d9f13SBarry Smith   PetscFunctionReturn(0);
2954273d9f13SBarry Smith }
2955273d9f13SBarry Smith 
2956209238afSKris Buschelman /*MC
2957002d173eSKris Buschelman    MATBAIJ - MATBAIJ = "baij" - A matrix type to be used for block sparse matrices.
2958209238afSKris Buschelman 
2959209238afSKris Buschelman    This matrix type is identical to MATSEQBAIJ when constructed with a single process communicator,
2960209238afSKris Buschelman    and MATMPIBAIJ otherwise.
2961209238afSKris Buschelman 
2962209238afSKris Buschelman    Options Database Keys:
2963209238afSKris Buschelman . -mat_type baij - sets the matrix type to "baij" during a call to MatSetFromOptions()
2964209238afSKris Buschelman 
2965209238afSKris Buschelman   Level: beginner
2966209238afSKris Buschelman 
2967c2e3fba1SPatrick Sanan .seealso: `MatCreateBAIJ()`, `MATSEQBAIJ`, `MATMPIBAIJ`, `MatMPIBAIJSetPreallocation()`, `MatMPIBAIJSetPreallocationCSR()`
2968209238afSKris Buschelman M*/
2969209238afSKris Buschelman 
2970273d9f13SBarry Smith /*@C
2971aac34f13SBarry Smith    MatMPIBAIJSetPreallocation - Allocates memory for a sparse parallel matrix in block AIJ format
2972273d9f13SBarry Smith    (block compressed row).  For good matrix assembly performance
2973273d9f13SBarry Smith    the user should preallocate the matrix storage by setting the parameters
2974273d9f13SBarry Smith    d_nz (or d_nnz) and o_nz (or o_nnz).  By setting these parameters accurately,
2975273d9f13SBarry Smith    performance can be increased by more than a factor of 50.
2976273d9f13SBarry Smith 
2977273d9f13SBarry Smith    Collective on Mat
2978273d9f13SBarry Smith 
2979273d9f13SBarry Smith    Input Parameters:
29801c4f3114SJed Brown +  B - the matrix
2981bb7ae925SBarry Smith .  bs   - size of block, the blocks are ALWAYS square. One can use MatSetBlockSizes() to set a different row and column blocksize but the row
2982bb7ae925SBarry Smith           blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with MatCreateVecs()
2983273d9f13SBarry Smith .  d_nz  - number of block nonzeros per block row in diagonal portion of local
2984273d9f13SBarry Smith            submatrix  (same for all local rows)
2985273d9f13SBarry Smith .  d_nnz - array containing the number of block nonzeros in the various block rows
2986273d9f13SBarry Smith            of the in diagonal portion of the local (possibly different for each block
29870298fd71SBarry Smith            row) or NULL.  If you plan to factor the matrix you must leave room for the diagonal entry and
298895742e49SBarry Smith            set it even if it is zero.
2989273d9f13SBarry Smith .  o_nz  - number of block nonzeros per block row in the off-diagonal portion of local
2990273d9f13SBarry Smith            submatrix (same for all local rows).
2991273d9f13SBarry Smith -  o_nnz - array containing the number of nonzeros in the various block rows of the
2992273d9f13SBarry Smith            off-diagonal portion of the local submatrix (possibly different for
29930298fd71SBarry Smith            each block row) or NULL.
2994273d9f13SBarry Smith 
299549a6f317SBarry Smith    If the *_nnz parameter is given then the *_nz parameter is ignored
2996273d9f13SBarry Smith 
2997273d9f13SBarry Smith    Options Database Keys:
29988c07d4e3SBarry Smith +   -mat_block_size - size of the blocks to use
299967b8a455SSatish Balay -   -mat_use_hash_table <fact> - set hash table factor
3000273d9f13SBarry Smith 
3001273d9f13SBarry Smith    Notes:
3002273d9f13SBarry Smith    If PETSC_DECIDE or  PETSC_DETERMINE is used for a particular argument on one processor
3003273d9f13SBarry Smith    than it must be used on all processors that share the object for that argument.
3004273d9f13SBarry Smith 
3005273d9f13SBarry Smith    Storage Information:
3006273d9f13SBarry Smith    For a square global matrix we define each processor's diagonal portion
3007273d9f13SBarry Smith    to be its local rows and the corresponding columns (a square submatrix);
3008273d9f13SBarry Smith    each processor's off-diagonal portion encompasses the remainder of the
3009273d9f13SBarry Smith    local matrix (a rectangular submatrix).
3010273d9f13SBarry Smith 
3011273d9f13SBarry Smith    The user can specify preallocated storage for the diagonal part of
3012273d9f13SBarry Smith    the local submatrix with either d_nz or d_nnz (not both).  Set
30130298fd71SBarry Smith    d_nz=PETSC_DEFAULT and d_nnz=NULL for PETSc to control dynamic
3014273d9f13SBarry Smith    memory allocation.  Likewise, specify preallocated storage for the
3015273d9f13SBarry Smith    off-diagonal part of the local submatrix with o_nz or o_nnz (not both).
3016273d9f13SBarry Smith 
3017273d9f13SBarry Smith    Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
3018273d9f13SBarry Smith    the figure below we depict these three local rows and all columns (0-11).
3019273d9f13SBarry Smith 
3020273d9f13SBarry Smith .vb
3021273d9f13SBarry Smith            0 1 2 3 4 5 6 7 8 9 10 11
3022a4b1a0f6SJed Brown           --------------------------
3023273d9f13SBarry Smith    row 3  |o o o d d d o o o o  o  o
3024273d9f13SBarry Smith    row 4  |o o o d d d o o o o  o  o
3025273d9f13SBarry Smith    row 5  |o o o d d d o o o o  o  o
3026a4b1a0f6SJed Brown           --------------------------
3027273d9f13SBarry Smith .ve
3028273d9f13SBarry Smith 
3029273d9f13SBarry Smith    Thus, any entries in the d locations are stored in the d (diagonal)
3030273d9f13SBarry Smith    submatrix, and any entries in the o locations are stored in the
3031273d9f13SBarry Smith    o (off-diagonal) submatrix.  Note that the d and the o submatrices are
3032273d9f13SBarry Smith    stored simply in the MATSEQBAIJ format for compressed row storage.
3033273d9f13SBarry Smith 
3034273d9f13SBarry Smith    Now d_nz should indicate the number of block nonzeros per row in the d matrix,
3035273d9f13SBarry Smith    and o_nz should indicate the number of block nonzeros per row in the o matrix.
3036273d9f13SBarry Smith    In general, for PDE problems in which most nonzeros are near the diagonal,
3037273d9f13SBarry Smith    one expects d_nz >> o_nz.   For large problems you MUST preallocate memory
3038273d9f13SBarry Smith    or you will get TERRIBLE performance; see the users' manual chapter on
3039273d9f13SBarry Smith    matrices.
3040273d9f13SBarry Smith 
3041aa95bbe8SBarry Smith    You can call MatGetInfo() to get information on how effective the preallocation was;
3042aa95bbe8SBarry Smith    for example the fields mallocs,nz_allocated,nz_used,nz_unneeded;
3043aa95bbe8SBarry Smith    You can also run with the option -info and look for messages with the string
3044aa95bbe8SBarry Smith    malloc in them to see if additional memory allocation was needed.
3045aa95bbe8SBarry Smith 
3046273d9f13SBarry Smith    Level: intermediate
3047273d9f13SBarry Smith 
3048db781477SPatrick Sanan .seealso: `MatCreate()`, `MatCreateSeqBAIJ()`, `MatSetValues()`, `MatCreateBAIJ()`, `MatMPIBAIJSetPreallocationCSR()`, `PetscSplitOwnership()`
3049273d9f13SBarry Smith @*/
30507087cfbeSBarry Smith PetscErrorCode  MatMPIBAIJSetPreallocation(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[])
3051273d9f13SBarry Smith {
3052273d9f13SBarry Smith   PetscFunctionBegin;
30536ba663aaSJed Brown   PetscValidHeaderSpecific(B,MAT_CLASSID,1);
30546ba663aaSJed Brown   PetscValidType(B,1);
30556ba663aaSJed Brown   PetscValidLogicalCollectiveInt(B,bs,2);
3056cac4c232SBarry Smith   PetscTryMethod(B,"MatMPIBAIJSetPreallocation_C",(Mat,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[]),(B,bs,d_nz,d_nnz,o_nz,o_nnz));
3057273d9f13SBarry Smith   PetscFunctionReturn(0);
3058273d9f13SBarry Smith }
3059273d9f13SBarry Smith 
306079bdfe76SSatish Balay /*@C
306169b1f4b7SBarry Smith    MatCreateBAIJ - Creates a sparse parallel matrix in block AIJ format
306279bdfe76SSatish Balay    (block compressed row).  For good matrix assembly performance
306379bdfe76SSatish Balay    the user should preallocate the matrix storage by setting the parameters
306479bdfe76SSatish Balay    d_nz (or d_nnz) and o_nz (or o_nnz).  By setting these parameters accurately,
306579bdfe76SSatish Balay    performance can be increased by more than a factor of 50.
306679bdfe76SSatish Balay 
3067d083f849SBarry Smith    Collective
3068db81eaa0SLois Curfman McInnes 
306979bdfe76SSatish Balay    Input Parameters:
3070db81eaa0SLois Curfman McInnes +  comm - MPI communicator
3071bb7ae925SBarry Smith .  bs   - size of block, the blocks are ALWAYS square. One can use MatSetBlockSizes() to set a different row and column blocksize but the row
3072bb7ae925SBarry Smith           blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with MatCreateVecs()
307379bdfe76SSatish Balay .  m - number of local rows (or PETSC_DECIDE to have calculated if M is given)
307492e8d321SLois Curfman McInnes            This value should be the same as the local size used in creating the
307592e8d321SLois Curfman McInnes            y vector for the matrix-vector product y = Ax.
307692e8d321SLois Curfman McInnes .  n - number of local columns (or PETSC_DECIDE to have calculated if N is given)
307792e8d321SLois Curfman McInnes            This value should be the same as the local size used in creating the
307892e8d321SLois Curfman McInnes            x vector for the matrix-vector product y = Ax.
3079be79a94dSBarry Smith .  M - number of global rows (or PETSC_DETERMINE to have calculated if m is given)
3080be79a94dSBarry Smith .  N - number of global columns (or PETSC_DETERMINE to have calculated if n is given)
308147a75d0bSBarry Smith .  d_nz  - number of nonzero blocks per block row in diagonal portion of local
308279bdfe76SSatish Balay            submatrix  (same for all local rows)
308347a75d0bSBarry Smith .  d_nnz - array containing the number of nonzero blocks in the various block rows
308492e8d321SLois Curfman McInnes            of the in diagonal portion of the local (possibly different for each block
30850298fd71SBarry Smith            row) or NULL.  If you plan to factor the matrix you must leave room for the diagonal entry
308695742e49SBarry Smith            and set it even if it is zero.
308747a75d0bSBarry Smith .  o_nz  - number of nonzero blocks per block row in the off-diagonal portion of local
308879bdfe76SSatish Balay            submatrix (same for all local rows).
308947a75d0bSBarry Smith -  o_nnz - array containing the number of nonzero blocks in the various block rows of the
309092e8d321SLois Curfman McInnes            off-diagonal portion of the local submatrix (possibly different for
30910298fd71SBarry Smith            each block row) or NULL.
309279bdfe76SSatish Balay 
309379bdfe76SSatish Balay    Output Parameter:
309479bdfe76SSatish Balay .  A - the matrix
309579bdfe76SSatish Balay 
3096db81eaa0SLois Curfman McInnes    Options Database Keys:
30978c07d4e3SBarry Smith +   -mat_block_size - size of the blocks to use
309867b8a455SSatish Balay -   -mat_use_hash_table <fact> - set hash table factor
30993ffaccefSLois Curfman McInnes 
3100175b88e8SBarry Smith    It is recommended that one use the MatCreate(), MatSetType() and/or MatSetFromOptions(),
3101f6f02116SRichard Tran Mills    MatXXXXSetPreallocation() paradigm instead of this routine directly.
3102175b88e8SBarry Smith    [MatXXXXSetPreallocation() is, for example, MatSeqAIJSetPreallocation]
3103175b88e8SBarry Smith 
3104b259b22eSLois Curfman McInnes    Notes:
310549a6f317SBarry Smith    If the *_nnz parameter is given then the *_nz parameter is ignored
310649a6f317SBarry Smith 
310747a75d0bSBarry Smith    A nonzero block is any block that as 1 or more nonzeros in it
310847a75d0bSBarry Smith 
310979bdfe76SSatish Balay    The user MUST specify either the local or global matrix dimensions
311079bdfe76SSatish Balay    (possibly both).
311179bdfe76SSatish Balay 
3112be79a94dSBarry Smith    If PETSC_DECIDE or  PETSC_DETERMINE is used for a particular argument on one processor
3113be79a94dSBarry Smith    than it must be used on all processors that share the object for that argument.
3114be79a94dSBarry Smith 
311579bdfe76SSatish Balay    Storage Information:
311679bdfe76SSatish Balay    For a square global matrix we define each processor's diagonal portion
311779bdfe76SSatish Balay    to be its local rows and the corresponding columns (a square submatrix);
311879bdfe76SSatish Balay    each processor's off-diagonal portion encompasses the remainder of the
311979bdfe76SSatish Balay    local matrix (a rectangular submatrix).
312079bdfe76SSatish Balay 
312179bdfe76SSatish Balay    The user can specify preallocated storage for the diagonal part of
312279bdfe76SSatish Balay    the local submatrix with either d_nz or d_nnz (not both).  Set
31230298fd71SBarry Smith    d_nz=PETSC_DEFAULT and d_nnz=NULL for PETSc to control dynamic
312479bdfe76SSatish Balay    memory allocation.  Likewise, specify preallocated storage for the
312579bdfe76SSatish Balay    off-diagonal part of the local submatrix with o_nz or o_nnz (not both).
312679bdfe76SSatish Balay 
312779bdfe76SSatish Balay    Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
312879bdfe76SSatish Balay    the figure below we depict these three local rows and all columns (0-11).
312979bdfe76SSatish Balay 
3130db81eaa0SLois Curfman McInnes .vb
3131db81eaa0SLois Curfman McInnes            0 1 2 3 4 5 6 7 8 9 10 11
3132a4b1a0f6SJed Brown           --------------------------
3133db81eaa0SLois Curfman McInnes    row 3  |o o o d d d o o o o  o  o
3134db81eaa0SLois Curfman McInnes    row 4  |o o o d d d o o o o  o  o
3135db81eaa0SLois Curfman McInnes    row 5  |o o o d d d o o o o  o  o
3136a4b1a0f6SJed Brown           --------------------------
3137db81eaa0SLois Curfman McInnes .ve
313879bdfe76SSatish Balay 
313979bdfe76SSatish Balay    Thus, any entries in the d locations are stored in the d (diagonal)
314079bdfe76SSatish Balay    submatrix, and any entries in the o locations are stored in the
314179bdfe76SSatish Balay    o (off-diagonal) submatrix.  Note that the d and the o submatrices are
314257b952d6SSatish Balay    stored simply in the MATSEQBAIJ format for compressed row storage.
314379bdfe76SSatish Balay 
3144d64ed03dSBarry Smith    Now d_nz should indicate the number of block nonzeros per row in the d matrix,
3145d64ed03dSBarry Smith    and o_nz should indicate the number of block nonzeros per row in the o matrix.
314679bdfe76SSatish Balay    In general, for PDE problems in which most nonzeros are near the diagonal,
314792e8d321SLois Curfman McInnes    one expects d_nz >> o_nz.   For large problems you MUST preallocate memory
314892e8d321SLois Curfman McInnes    or you will get TERRIBLE performance; see the users' manual chapter on
31496da5968aSLois Curfman McInnes    matrices.
315079bdfe76SSatish Balay 
3151027ccd11SLois Curfman McInnes    Level: intermediate
3152027ccd11SLois Curfman McInnes 
3153db781477SPatrick Sanan .seealso: `MatCreate()`, `MatCreateSeqBAIJ()`, `MatSetValues()`, `MatCreateBAIJ()`, `MatMPIBAIJSetPreallocation()`, `MatMPIBAIJSetPreallocationCSR()`
315479bdfe76SSatish Balay @*/
315569b1f4b7SBarry Smith PetscErrorCode  MatCreateBAIJ(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[],Mat *A)
315679bdfe76SSatish Balay {
3157b24ad042SBarry Smith   PetscMPIInt    size;
315879bdfe76SSatish Balay 
3159d64ed03dSBarry Smith   PetscFunctionBegin;
31609566063dSJacob Faibussowitsch   PetscCall(MatCreate(comm,A));
31619566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(*A,m,n,M,N));
31629566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm,&size));
3163273d9f13SBarry Smith   if (size > 1) {
31649566063dSJacob Faibussowitsch     PetscCall(MatSetType(*A,MATMPIBAIJ));
31659566063dSJacob Faibussowitsch     PetscCall(MatMPIBAIJSetPreallocation(*A,bs,d_nz,d_nnz,o_nz,o_nnz));
3166273d9f13SBarry Smith   } else {
31679566063dSJacob Faibussowitsch     PetscCall(MatSetType(*A,MATSEQBAIJ));
31689566063dSJacob Faibussowitsch     PetscCall(MatSeqBAIJSetPreallocation(*A,bs,d_nz,d_nnz));
31693914022bSBarry Smith   }
31703a40ed3dSBarry Smith   PetscFunctionReturn(0);
317179bdfe76SSatish Balay }
3172026e39d0SSatish Balay 
31736849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIBAIJ(Mat matin,MatDuplicateOption cpvalues,Mat *newmat)
31740ac07820SSatish Balay {
31750ac07820SSatish Balay   Mat            mat;
31760ac07820SSatish Balay   Mat_MPIBAIJ    *a,*oldmat = (Mat_MPIBAIJ*)matin->data;
3177b24ad042SBarry Smith   PetscInt       len=0;
31780ac07820SSatish Balay 
3179d64ed03dSBarry Smith   PetscFunctionBegin;
3180f4259b30SLisandro Dalcin   *newmat = NULL;
31819566063dSJacob Faibussowitsch   PetscCall(MatCreate(PetscObjectComm((PetscObject)matin),&mat));
31829566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(mat,matin->rmap->n,matin->cmap->n,matin->rmap->N,matin->cmap->N));
31839566063dSJacob Faibussowitsch   PetscCall(MatSetType(mat,((PetscObject)matin)->type_name));
31847fff6886SHong Zhang 
3185d5f3da31SBarry Smith   mat->factortype   = matin->factortype;
3186273d9f13SBarry Smith   mat->preallocated = PETSC_TRUE;
31870ac07820SSatish Balay   mat->assembled    = PETSC_TRUE;
31887fff6886SHong Zhang   mat->insertmode   = NOT_SET_VALUES;
31897fff6886SHong Zhang 
3190273d9f13SBarry Smith   a             = (Mat_MPIBAIJ*)mat->data;
3191d0f46423SBarry Smith   mat->rmap->bs = matin->rmap->bs;
31920ac07820SSatish Balay   a->bs2        = oldmat->bs2;
31930ac07820SSatish Balay   a->mbs        = oldmat->mbs;
31940ac07820SSatish Balay   a->nbs        = oldmat->nbs;
31950ac07820SSatish Balay   a->Mbs        = oldmat->Mbs;
31960ac07820SSatish Balay   a->Nbs        = oldmat->Nbs;
31970ac07820SSatish Balay 
31989566063dSJacob Faibussowitsch   PetscCall(PetscLayoutReference(matin->rmap,&mat->rmap));
31999566063dSJacob Faibussowitsch   PetscCall(PetscLayoutReference(matin->cmap,&mat->cmap));
3200899cda47SBarry Smith 
32010ac07820SSatish Balay   a->size         = oldmat->size;
32020ac07820SSatish Balay   a->rank         = oldmat->rank;
3203aef5e8e0SSatish Balay   a->donotstash   = oldmat->donotstash;
3204aef5e8e0SSatish Balay   a->roworiented  = oldmat->roworiented;
3205f4259b30SLisandro Dalcin   a->rowindices   = NULL;
3206f4259b30SLisandro Dalcin   a->rowvalues    = NULL;
32070ac07820SSatish Balay   a->getrowactive = PETSC_FALSE;
3208f4259b30SLisandro Dalcin   a->barray       = NULL;
3209899cda47SBarry Smith   a->rstartbs     = oldmat->rstartbs;
3210899cda47SBarry Smith   a->rendbs       = oldmat->rendbs;
3211899cda47SBarry Smith   a->cstartbs     = oldmat->cstartbs;
3212899cda47SBarry Smith   a->cendbs       = oldmat->cendbs;
32130ac07820SSatish Balay 
3214133cdb44SSatish Balay   /* hash table stuff */
3215f4259b30SLisandro Dalcin   a->ht           = NULL;
3216f4259b30SLisandro Dalcin   a->hd           = NULL;
3217133cdb44SSatish Balay   a->ht_size      = 0;
3218133cdb44SSatish Balay   a->ht_flag      = oldmat->ht_flag;
321925fdafccSSatish Balay   a->ht_fact      = oldmat->ht_fact;
3220133cdb44SSatish Balay   a->ht_total_ct  = 0;
3221133cdb44SSatish Balay   a->ht_insert_ct = 0;
3222133cdb44SSatish Balay 
32239566063dSJacob Faibussowitsch   PetscCall(PetscArraycpy(a->rangebs,oldmat->rangebs,a->size+1));
32240ac07820SSatish Balay   if (oldmat->colmap) {
3225aa482453SBarry Smith #if defined(PETSC_USE_CTABLE)
32269566063dSJacob Faibussowitsch     PetscCall(PetscTableCreateCopy(oldmat->colmap,&a->colmap));
322748e59246SSatish Balay #else
32289566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(a->Nbs,&a->colmap));
32299566063dSJacob Faibussowitsch     PetscCall(PetscLogObjectMemory((PetscObject)mat,(a->Nbs)*sizeof(PetscInt)));
32309566063dSJacob Faibussowitsch     PetscCall(PetscArraycpy(a->colmap,oldmat->colmap,a->Nbs));
323148e59246SSatish Balay #endif
3232f4259b30SLisandro Dalcin   } else a->colmap = NULL;
32334beb1cfeSHong Zhang 
32340ac07820SSatish Balay   if (oldmat->garray && (len = ((Mat_SeqBAIJ*)(oldmat->B->data))->nbs)) {
32359566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(len,&a->garray));
32369566063dSJacob Faibussowitsch     PetscCall(PetscLogObjectMemory((PetscObject)mat,len*sizeof(PetscInt)));
32379566063dSJacob Faibussowitsch     PetscCall(PetscArraycpy(a->garray,oldmat->garray,len));
3238f4259b30SLisandro Dalcin   } else a->garray = NULL;
32390ac07820SSatish Balay 
32409566063dSJacob Faibussowitsch   PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)matin),matin->rmap->bs,&mat->bstash));
32419566063dSJacob Faibussowitsch   PetscCall(VecDuplicate(oldmat->lvec,&a->lvec));
32429566063dSJacob Faibussowitsch   PetscCall(PetscLogObjectParent((PetscObject)mat,(PetscObject)a->lvec));
32439566063dSJacob Faibussowitsch   PetscCall(VecScatterCopy(oldmat->Mvctx,&a->Mvctx));
32449566063dSJacob Faibussowitsch   PetscCall(PetscLogObjectParent((PetscObject)mat,(PetscObject)a->Mvctx));
32457fff6886SHong Zhang 
32469566063dSJacob Faibussowitsch   PetscCall(MatDuplicate(oldmat->A,cpvalues,&a->A));
32479566063dSJacob Faibussowitsch   PetscCall(PetscLogObjectParent((PetscObject)mat,(PetscObject)a->A));
32489566063dSJacob Faibussowitsch   PetscCall(MatDuplicate(oldmat->B,cpvalues,&a->B));
32499566063dSJacob Faibussowitsch   PetscCall(PetscLogObjectParent((PetscObject)mat,(PetscObject)a->B));
32509566063dSJacob Faibussowitsch   PetscCall(PetscFunctionListDuplicate(((PetscObject)matin)->qlist,&((PetscObject)mat)->qlist));
32510ac07820SSatish Balay   *newmat = mat;
32523a40ed3dSBarry Smith   PetscFunctionReturn(0);
32530ac07820SSatish Balay }
325457b952d6SSatish Balay 
3255618cc2edSLisandro Dalcin /* Used for both MPIBAIJ and MPISBAIJ matrices */
3256b51a4376SLisandro Dalcin PetscErrorCode MatLoad_MPIBAIJ_Binary(Mat mat,PetscViewer viewer)
3257b51a4376SLisandro Dalcin {
3258b51a4376SLisandro Dalcin   PetscInt       header[4],M,N,nz,bs,m,n,mbs,nbs,rows,cols,sum,i,j,k;
3259b51a4376SLisandro Dalcin   PetscInt       *rowidxs,*colidxs,rs,cs,ce;
3260b51a4376SLisandro Dalcin   PetscScalar    *matvals;
3261b51a4376SLisandro Dalcin 
3262b51a4376SLisandro Dalcin   PetscFunctionBegin;
32639566063dSJacob Faibussowitsch   PetscCall(PetscViewerSetUp(viewer));
3264b51a4376SLisandro Dalcin 
3265b51a4376SLisandro Dalcin   /* read in matrix header */
32669566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryRead(viewer,header,4,NULL,PETSC_INT));
32675f80ce2aSJacob Faibussowitsch   PetscCheck(header[0] == MAT_FILE_CLASSID,PetscObjectComm((PetscObject)viewer),PETSC_ERR_FILE_UNEXPECTED,"Not a matrix object in file");
3268b51a4376SLisandro Dalcin   M  = header[1]; N = header[2]; nz = header[3];
32695f80ce2aSJacob Faibussowitsch   PetscCheck(M >= 0,PetscObjectComm((PetscObject)viewer),PETSC_ERR_FILE_UNEXPECTED,"Matrix row size (%" PetscInt_FMT ") in file is negative",M);
32705f80ce2aSJacob Faibussowitsch   PetscCheck(N >= 0,PetscObjectComm((PetscObject)viewer),PETSC_ERR_FILE_UNEXPECTED,"Matrix column size (%" PetscInt_FMT ") in file is negative",N);
32715f80ce2aSJacob Faibussowitsch   PetscCheck(nz >= 0,PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"Matrix stored in special format on disk, cannot load as MPIBAIJ");
3272b51a4376SLisandro Dalcin 
3273b51a4376SLisandro Dalcin   /* set block sizes from the viewer's .info file */
32749566063dSJacob Faibussowitsch   PetscCall(MatLoad_Binary_BlockSizes(mat,viewer));
3275618cc2edSLisandro Dalcin   /* set local sizes if not set already */
3276618cc2edSLisandro Dalcin   if (mat->rmap->n < 0 && M == N) mat->rmap->n = mat->cmap->n;
3277618cc2edSLisandro Dalcin   if (mat->cmap->n < 0 && M == N) mat->cmap->n = mat->rmap->n;
3278b51a4376SLisandro Dalcin   /* set global sizes if not set already */
3279b51a4376SLisandro Dalcin   if (mat->rmap->N < 0) mat->rmap->N = M;
3280b51a4376SLisandro Dalcin   if (mat->cmap->N < 0) mat->cmap->N = N;
32819566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(mat->rmap));
32829566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(mat->cmap));
3283b51a4376SLisandro Dalcin 
3284b51a4376SLisandro Dalcin   /* check if the matrix sizes are correct */
32859566063dSJacob Faibussowitsch   PetscCall(MatGetSize(mat,&rows,&cols));
32865f80ce2aSJacob Faibussowitsch   PetscCheck(M == rows && N == cols,PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED, "Matrix in file of different sizes (%" PetscInt_FMT ", %" PetscInt_FMT ") than the input matrix (%" PetscInt_FMT ", %" PetscInt_FMT ")",M,N,rows,cols);
32879566063dSJacob Faibussowitsch   PetscCall(MatGetBlockSize(mat,&bs));
32889566063dSJacob Faibussowitsch   PetscCall(MatGetLocalSize(mat,&m,&n));
32899566063dSJacob Faibussowitsch   PetscCall(PetscLayoutGetRange(mat->rmap,&rs,NULL));
32909566063dSJacob Faibussowitsch   PetscCall(PetscLayoutGetRange(mat->cmap,&cs,&ce));
3291b51a4376SLisandro Dalcin   mbs = m/bs; nbs = n/bs;
3292b51a4376SLisandro Dalcin 
3293b51a4376SLisandro Dalcin   /* read in row lengths and build row indices */
32949566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(m+1,&rowidxs));
32959566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryReadAll(viewer,rowidxs+1,m,PETSC_DECIDE,M,PETSC_INT));
3296b51a4376SLisandro Dalcin   rowidxs[0] = 0; for (i=0; i<m; i++) rowidxs[i+1] += rowidxs[i];
32971c2dc1cbSBarry Smith   PetscCall(MPIU_Allreduce(&rowidxs[m],&sum,1,MPIU_INT,MPI_SUM,PetscObjectComm((PetscObject)viewer)));
32985f80ce2aSJacob Faibussowitsch   PetscCheck(sum == nz,PetscObjectComm((PetscObject)viewer),PETSC_ERR_FILE_UNEXPECTED,"Inconsistent matrix data in file: nonzeros = %" PetscInt_FMT ", sum-row-lengths = %" PetscInt_FMT,nz,sum);
3299b51a4376SLisandro Dalcin 
3300b51a4376SLisandro Dalcin   /* read in column indices and matrix values */
33019566063dSJacob Faibussowitsch   PetscCall(PetscMalloc2(rowidxs[m],&colidxs,rowidxs[m],&matvals));
33029566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryReadAll(viewer,colidxs,rowidxs[m],PETSC_DETERMINE,PETSC_DETERMINE,PETSC_INT));
33039566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryReadAll(viewer,matvals,rowidxs[m],PETSC_DETERMINE,PETSC_DETERMINE,PETSC_SCALAR));
3304b51a4376SLisandro Dalcin 
3305b51a4376SLisandro Dalcin   { /* preallocate matrix storage */
3306b51a4376SLisandro Dalcin     PetscBT    bt; /* helper bit set to count diagonal nonzeros */
3307b51a4376SLisandro Dalcin     PetscHSetI ht; /* helper hash set to count off-diagonal nonzeros */
3308618cc2edSLisandro Dalcin     PetscBool  sbaij,done;
3309b51a4376SLisandro Dalcin     PetscInt   *d_nnz,*o_nnz;
3310b51a4376SLisandro Dalcin 
33119566063dSJacob Faibussowitsch     PetscCall(PetscBTCreate(nbs,&bt));
33129566063dSJacob Faibussowitsch     PetscCall(PetscHSetICreate(&ht));
33139566063dSJacob Faibussowitsch     PetscCall(PetscCalloc2(mbs,&d_nnz,mbs,&o_nnz));
33149566063dSJacob Faibussowitsch     PetscCall(PetscObjectTypeCompare((PetscObject)mat,MATMPISBAIJ,&sbaij));
3315b51a4376SLisandro Dalcin     for (i=0; i<mbs; i++) {
33169566063dSJacob Faibussowitsch       PetscCall(PetscBTMemzero(nbs,bt));
33179566063dSJacob Faibussowitsch       PetscCall(PetscHSetIClear(ht));
3318618cc2edSLisandro Dalcin       for (k=0; k<bs; k++) {
3319618cc2edSLisandro Dalcin         PetscInt row = bs*i + k;
3320618cc2edSLisandro Dalcin         for (j=rowidxs[row]; j<rowidxs[row+1]; j++) {
3321618cc2edSLisandro Dalcin           PetscInt col = colidxs[j];
3322618cc2edSLisandro Dalcin           if (!sbaij || col >= row) {
3323618cc2edSLisandro Dalcin             if (col >= cs && col < ce) {
3324618cc2edSLisandro Dalcin               if (!PetscBTLookupSet(bt,(col-cs)/bs)) d_nnz[i]++;
3325b51a4376SLisandro Dalcin             } else {
33269566063dSJacob Faibussowitsch               PetscCall(PetscHSetIQueryAdd(ht,col/bs,&done));
3327b51a4376SLisandro Dalcin               if (done) o_nnz[i]++;
3328b51a4376SLisandro Dalcin             }
3329b51a4376SLisandro Dalcin           }
3330618cc2edSLisandro Dalcin         }
3331618cc2edSLisandro Dalcin       }
3332618cc2edSLisandro Dalcin     }
33339566063dSJacob Faibussowitsch     PetscCall(PetscBTDestroy(&bt));
33349566063dSJacob Faibussowitsch     PetscCall(PetscHSetIDestroy(&ht));
33359566063dSJacob Faibussowitsch     PetscCall(MatMPIBAIJSetPreallocation(mat,bs,0,d_nnz,0,o_nnz));
33369566063dSJacob Faibussowitsch     PetscCall(MatMPISBAIJSetPreallocation(mat,bs,0,d_nnz,0,o_nnz));
33379566063dSJacob Faibussowitsch     PetscCall(PetscFree2(d_nnz,o_nnz));
3338b51a4376SLisandro Dalcin   }
3339b51a4376SLisandro Dalcin 
3340b51a4376SLisandro Dalcin   /* store matrix values */
3341b51a4376SLisandro Dalcin   for (i=0; i<m; i++) {
3342b51a4376SLisandro Dalcin     PetscInt row = rs + i, s = rowidxs[i], e = rowidxs[i+1];
33439566063dSJacob Faibussowitsch     PetscCall((*mat->ops->setvalues)(mat,1,&row,e-s,colidxs+s,matvals+s,INSERT_VALUES));
3344b51a4376SLisandro Dalcin   }
3345b51a4376SLisandro Dalcin 
33469566063dSJacob Faibussowitsch   PetscCall(PetscFree(rowidxs));
33479566063dSJacob Faibussowitsch   PetscCall(PetscFree2(colidxs,matvals));
33489566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(mat,MAT_FINAL_ASSEMBLY));
33499566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(mat,MAT_FINAL_ASSEMBLY));
3350b51a4376SLisandro Dalcin   PetscFunctionReturn(0);
3351b51a4376SLisandro Dalcin }
3352b51a4376SLisandro Dalcin 
3353b51a4376SLisandro Dalcin PetscErrorCode MatLoad_MPIBAIJ(Mat mat,PetscViewer viewer)
33544683f7a4SShri Abhyankar {
33557f489da9SVaclav Hapla   PetscBool isbinary;
33564683f7a4SShri Abhyankar 
33574683f7a4SShri Abhyankar   PetscFunctionBegin;
33589566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary));
33595f80ce2aSJacob Faibussowitsch   PetscCheck(isbinary,PetscObjectComm((PetscObject)viewer),PETSC_ERR_SUP,"Viewer type %s not yet supported for reading %s matrices",((PetscObject)viewer)->type_name,((PetscObject)mat)->type_name);
33609566063dSJacob Faibussowitsch   PetscCall(MatLoad_MPIBAIJ_Binary(mat,viewer));
33614683f7a4SShri Abhyankar   PetscFunctionReturn(0);
33624683f7a4SShri Abhyankar }
33634683f7a4SShri Abhyankar 
3364133cdb44SSatish Balay /*@
3365133cdb44SSatish Balay    MatMPIBAIJSetHashTableFactor - Sets the factor required to compute the size of the HashTable.
3366133cdb44SSatish Balay 
3367133cdb44SSatish Balay    Input Parameters:
3368a2b725a8SWilliam Gropp +  mat  - the matrix
3369a2b725a8SWilliam Gropp -  fact - factor
3370133cdb44SSatish Balay 
3371c5eb9154SBarry Smith    Not Collective, each process can use a different factor
3372fee21e36SBarry Smith 
33738c890885SBarry Smith    Level: advanced
33748c890885SBarry Smith 
3375133cdb44SSatish Balay   Notes:
33768c07d4e3SBarry Smith    This can also be set by the command line option: -mat_use_hash_table <fact>
3377133cdb44SSatish Balay 
3378db781477SPatrick Sanan .seealso: `MatSetOption()`
3379133cdb44SSatish Balay @*/
33807087cfbeSBarry Smith PetscErrorCode  MatMPIBAIJSetHashTableFactor(Mat mat,PetscReal fact)
3381133cdb44SSatish Balay {
33825bf65638SKris Buschelman   PetscFunctionBegin;
3383cac4c232SBarry Smith   PetscTryMethod(mat,"MatSetHashTableFactor_C",(Mat,PetscReal),(mat,fact));
33845bf65638SKris Buschelman   PetscFunctionReturn(0);
33855bf65638SKris Buschelman }
33865bf65638SKris Buschelman 
33877087cfbeSBarry Smith PetscErrorCode  MatSetHashTableFactor_MPIBAIJ(Mat mat,PetscReal fact)
33885bf65638SKris Buschelman {
338925fdafccSSatish Balay   Mat_MPIBAIJ *baij;
3390133cdb44SSatish Balay 
3391133cdb44SSatish Balay   PetscFunctionBegin;
3392133cdb44SSatish Balay   baij          = (Mat_MPIBAIJ*)mat->data;
3393133cdb44SSatish Balay   baij->ht_fact = fact;
3394133cdb44SSatish Balay   PetscFunctionReturn(0);
3395133cdb44SSatish Balay }
3396f2a5309cSSatish Balay 
33979230625dSJed Brown PetscErrorCode  MatMPIBAIJGetSeqBAIJ(Mat A,Mat *Ad,Mat *Ao,const PetscInt *colmap[])
3398f2a5309cSSatish Balay {
3399f2a5309cSSatish Balay   Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data;
3400ab4d48faSStefano Zampini   PetscBool    flg;
34015fd66863SKarl Rupp 
3402f2a5309cSSatish Balay   PetscFunctionBegin;
34039566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)A,MATMPIBAIJ,&flg));
34045f80ce2aSJacob Faibussowitsch   PetscCheck(flg,PetscObjectComm((PetscObject)A),PETSC_ERR_SUP,"This function requires a MATMPIBAIJ matrix as input");
340521e72a00SBarry Smith   if (Ad)     *Ad     = a->A;
340621e72a00SBarry Smith   if (Ao)     *Ao     = a->B;
340721e72a00SBarry Smith   if (colmap) *colmap = a->garray;
3408f2a5309cSSatish Balay   PetscFunctionReturn(0);
3409f2a5309cSSatish Balay }
341085535b8eSBarry Smith 
341185535b8eSBarry Smith /*
341285535b8eSBarry Smith     Special version for direct calls from Fortran (to eliminate two function call overheads
341385535b8eSBarry Smith */
341485535b8eSBarry Smith #if defined(PETSC_HAVE_FORTRAN_CAPS)
341585535b8eSBarry Smith #define matmpibaijsetvaluesblocked_ MATMPIBAIJSETVALUESBLOCKED
341685535b8eSBarry Smith #elif !defined(PETSC_HAVE_FORTRAN_UNDERSCORE)
341785535b8eSBarry Smith #define matmpibaijsetvaluesblocked_ matmpibaijsetvaluesblocked
341885535b8eSBarry Smith #endif
341985535b8eSBarry Smith 
342085535b8eSBarry Smith /*@C
342185535b8eSBarry Smith   MatMPIBAIJSetValuesBlocked - Direct Fortran call to replace call to MatSetValuesBlocked()
342285535b8eSBarry Smith 
342385535b8eSBarry Smith   Collective on Mat
342485535b8eSBarry Smith 
342585535b8eSBarry Smith   Input Parameters:
342685535b8eSBarry Smith + mat - the matrix
342785535b8eSBarry Smith . min - number of input rows
342885535b8eSBarry Smith . im - input rows
342985535b8eSBarry Smith . nin - number of input columns
343085535b8eSBarry Smith . in - input columns
343185535b8eSBarry Smith . v - numerical values input
343285535b8eSBarry Smith - addvin - INSERT_VALUES or ADD_VALUES
343385535b8eSBarry Smith 
343495452b02SPatrick Sanan   Notes:
343595452b02SPatrick Sanan     This has a complete copy of MatSetValuesBlocked_MPIBAIJ() which is terrible code un-reuse.
343685535b8eSBarry Smith 
343785535b8eSBarry Smith   Level: advanced
343885535b8eSBarry Smith 
3439db781477SPatrick Sanan .seealso: `MatSetValuesBlocked()`
344085535b8eSBarry Smith @*/
344185535b8eSBarry Smith PetscErrorCode matmpibaijsetvaluesblocked_(Mat *matin,PetscInt *min,const PetscInt im[],PetscInt *nin,const PetscInt in[],const MatScalar v[],InsertMode *addvin)
344285535b8eSBarry Smith {
344385535b8eSBarry Smith   /* convert input arguments to C version */
344485535b8eSBarry Smith   Mat        mat  = *matin;
344585535b8eSBarry Smith   PetscInt   m    = *min, n = *nin;
344685535b8eSBarry Smith   InsertMode addv = *addvin;
344785535b8eSBarry Smith 
344885535b8eSBarry Smith   Mat_MPIBAIJ     *baij = (Mat_MPIBAIJ*)mat->data;
344985535b8eSBarry Smith   const MatScalar *value;
345085535b8eSBarry Smith   MatScalar       *barray     = baij->barray;
3451ace3abfcSBarry Smith   PetscBool       roworiented = baij->roworiented;
345285535b8eSBarry Smith   PetscInt        i,j,ii,jj,row,col,rstart=baij->rstartbs;
345385535b8eSBarry Smith   PetscInt        rend=baij->rendbs,cstart=baij->cstartbs,stepval;
3454d0f46423SBarry Smith   PetscInt        cend=baij->cendbs,bs=mat->rmap->bs,bs2=baij->bs2;
345585535b8eSBarry Smith 
345685535b8eSBarry Smith   PetscFunctionBegin;
345785535b8eSBarry Smith   /* tasks normally handled by MatSetValuesBlocked() */
345826fbe8dcSKarl Rupp   if (mat->insertmode == NOT_SET_VALUES) mat->insertmode = addv;
34595f80ce2aSJacob Faibussowitsch   else PetscCheck(mat->insertmode == addv,PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Cannot mix add values and insert values");
34605f80ce2aSJacob Faibussowitsch   PetscCheck(!mat->factortype,PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Not for factored matrix");
346185535b8eSBarry Smith   if (mat->assembled) {
346285535b8eSBarry Smith     mat->was_assembled = PETSC_TRUE;
346385535b8eSBarry Smith     mat->assembled     = PETSC_FALSE;
346485535b8eSBarry Smith   }
34659566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(MAT_SetValues,mat,0,0,0));
346685535b8eSBarry Smith 
346785535b8eSBarry Smith   if (!barray) {
34689566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(bs2,&barray));
346985535b8eSBarry Smith     baij->barray = barray;
347085535b8eSBarry Smith   }
347185535b8eSBarry Smith 
347226fbe8dcSKarl Rupp   if (roworiented) stepval = (n-1)*bs;
347326fbe8dcSKarl Rupp   else stepval = (m-1)*bs;
347426fbe8dcSKarl Rupp 
347585535b8eSBarry Smith   for (i=0; i<m; i++) {
347685535b8eSBarry Smith     if (im[i] < 0) continue;
34776bdcaf15SBarry Smith     PetscCheck(im[i] < baij->Mbs,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large, row %" PetscInt_FMT " max %" PetscInt_FMT,im[i],baij->Mbs-1);
347885535b8eSBarry Smith     if (im[i] >= rstart && im[i] < rend) {
347985535b8eSBarry Smith       row = im[i] - rstart;
348085535b8eSBarry Smith       for (j=0; j<n; j++) {
348185535b8eSBarry Smith         /* If NumCol = 1 then a copy is not required */
348285535b8eSBarry Smith         if ((roworiented) && (n == 1)) {
348385535b8eSBarry Smith           barray = (MatScalar*)v + i*bs2;
348485535b8eSBarry Smith         } else if ((!roworiented) && (m == 1)) {
348585535b8eSBarry Smith           barray = (MatScalar*)v + j*bs2;
348685535b8eSBarry Smith         } else { /* Here a copy is required */
348785535b8eSBarry Smith           if (roworiented) {
348885535b8eSBarry Smith             value = v + i*(stepval+bs)*bs + j*bs;
348985535b8eSBarry Smith           } else {
349085535b8eSBarry Smith             value = v + j*(stepval+bs)*bs + i*bs;
349185535b8eSBarry Smith           }
349285535b8eSBarry Smith           for (ii=0; ii<bs; ii++,value+=stepval) {
349385535b8eSBarry Smith             for (jj=0; jj<bs; jj++) {
349485535b8eSBarry Smith               *barray++ = *value++;
349585535b8eSBarry Smith             }
349685535b8eSBarry Smith           }
349785535b8eSBarry Smith           barray -=bs2;
349885535b8eSBarry Smith         }
349985535b8eSBarry Smith 
350085535b8eSBarry Smith         if (in[j] >= cstart && in[j] < cend) {
350185535b8eSBarry Smith           col  = in[j] - cstart;
35029566063dSJacob Faibussowitsch           PetscCall(MatSetValuesBlocked_SeqBAIJ_Inlined(baij->A,row,col,barray,addv,im[i],in[j]));
3503f7d195e4SLawrence Mitchell         } else if (in[j] < 0) {
3504f7d195e4SLawrence Mitchell           continue;
3505f7d195e4SLawrence Mitchell         } else {
3506f7d195e4SLawrence Mitchell           PetscCheck(in[j] < baij->Nbs,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large, col %" PetscInt_FMT " max %" PetscInt_FMT,in[j],baij->Nbs-1);
350785535b8eSBarry Smith           if (mat->was_assembled) {
350885535b8eSBarry Smith             if (!baij->colmap) {
35099566063dSJacob Faibussowitsch               PetscCall(MatCreateColmap_MPIBAIJ_Private(mat));
351085535b8eSBarry Smith             }
351185535b8eSBarry Smith 
351285535b8eSBarry Smith #if defined(PETSC_USE_DEBUG)
351385535b8eSBarry Smith #if defined(PETSC_USE_CTABLE)
351485535b8eSBarry Smith             { PetscInt data;
35159566063dSJacob Faibussowitsch               PetscCall(PetscTableFind(baij->colmap,in[j]+1,&data));
351608401ef6SPierre Jolivet               PetscCheck((data - 1) % bs == 0,PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap");
351785535b8eSBarry Smith             }
351885535b8eSBarry Smith #else
351908401ef6SPierre Jolivet             PetscCheck((baij->colmap[in[j]] - 1) % bs == 0,PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap");
352085535b8eSBarry Smith #endif
352185535b8eSBarry Smith #endif
352285535b8eSBarry Smith #if defined(PETSC_USE_CTABLE)
35239566063dSJacob Faibussowitsch             PetscCall(PetscTableFind(baij->colmap,in[j]+1,&col));
352485535b8eSBarry Smith             col  = (col - 1)/bs;
352585535b8eSBarry Smith #else
352685535b8eSBarry Smith             col = (baij->colmap[in[j]] - 1)/bs;
352785535b8eSBarry Smith #endif
352885535b8eSBarry Smith             if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) {
35299566063dSJacob Faibussowitsch               PetscCall(MatDisAssemble_MPIBAIJ(mat));
353085535b8eSBarry Smith               col  =  in[j];
353185535b8eSBarry Smith             }
353226fbe8dcSKarl Rupp           } else col = in[j];
35339566063dSJacob Faibussowitsch           PetscCall(MatSetValuesBlocked_SeqBAIJ_Inlined(baij->B,row,col,barray,addv,im[i],in[j]));
353485535b8eSBarry Smith         }
353585535b8eSBarry Smith       }
353685535b8eSBarry Smith     } else {
353785535b8eSBarry Smith       if (!baij->donotstash) {
353885535b8eSBarry Smith         if (roworiented) {
35399566063dSJacob Faibussowitsch           PetscCall(MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i));
354085535b8eSBarry Smith         } else {
35419566063dSJacob Faibussowitsch           PetscCall(MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i));
354285535b8eSBarry Smith         }
354385535b8eSBarry Smith       }
354485535b8eSBarry Smith     }
354585535b8eSBarry Smith   }
354685535b8eSBarry Smith 
354785535b8eSBarry Smith   /* task normally handled by MatSetValuesBlocked() */
35489566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(MAT_SetValues,mat,0,0,0));
354985535b8eSBarry Smith   PetscFunctionReturn(0);
355085535b8eSBarry Smith }
3551dfb205c3SBarry Smith 
3552dfb205c3SBarry Smith /*@
3553483a2f95SBarry Smith      MatCreateMPIBAIJWithArrays - creates a MPI BAIJ matrix using arrays that contain in standard block
3554dfb205c3SBarry Smith          CSR format the local rows.
3555dfb205c3SBarry Smith 
3556d083f849SBarry Smith    Collective
3557dfb205c3SBarry Smith 
3558dfb205c3SBarry Smith    Input Parameters:
3559dfb205c3SBarry Smith +  comm - MPI communicator
3560dfb205c3SBarry Smith .  bs - the block size, only a block size of 1 is supported
3561dfb205c3SBarry Smith .  m - number of local rows (Cannot be PETSC_DECIDE)
3562dfb205c3SBarry Smith .  n - This value should be the same as the local size used in creating the
3563dfb205c3SBarry Smith        x vector for the matrix-vector product y = Ax. (or PETSC_DECIDE to have
3564dfb205c3SBarry Smith        calculated if N is given) For square matrices n is almost always m.
3565dfb205c3SBarry Smith .  M - number of global rows (or PETSC_DETERMINE to have calculated if m is given)
3566dfb205c3SBarry Smith .  N - number of global columns (or PETSC_DETERMINE to have calculated if n is given)
3567483a2f95SBarry Smith .   i - row indices; that is i[0] = 0, i[row] = i[row-1] + number of block elements in that rowth block row of the matrix
3568dfb205c3SBarry Smith .   j - column indices
3569dfb205c3SBarry Smith -   a - matrix values
3570dfb205c3SBarry Smith 
3571dfb205c3SBarry Smith    Output Parameter:
3572dfb205c3SBarry Smith .   mat - the matrix
3573dfb205c3SBarry Smith 
3574dfb205c3SBarry Smith    Level: intermediate
3575dfb205c3SBarry Smith 
3576dfb205c3SBarry Smith    Notes:
3577dfb205c3SBarry Smith        The i, j, and a arrays ARE copied by this routine into the internal format used by PETSc;
3578dfb205c3SBarry Smith      thus you CANNOT change the matrix entries by changing the values of a[] after you have
3579dfb205c3SBarry Smith      called this routine. Use MatCreateMPIAIJWithSplitArrays() to avoid needing to copy the arrays.
3580dfb205c3SBarry Smith 
35813adadaf3SJed Brown      The order of the entries in values is the same as the block compressed sparse row storage format; that is, it is
35823adadaf3SJed Brown      the same as a three dimensional array in Fortran values(bs,bs,nnz) that contains the first column of the first
35833adadaf3SJed Brown      block, followed by the second column of the first block etc etc.  That is, the blocks are contiguous in memory
35843adadaf3SJed Brown      with column-major ordering within blocks.
35853adadaf3SJed Brown 
3586dfb205c3SBarry Smith        The i and j indices are 0 based, and i indices are indices corresponding to the local j array.
3587dfb205c3SBarry Smith 
3588db781477SPatrick Sanan .seealso: `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`,
3589db781477SPatrick Sanan           `MPIAIJ`, `MatCreateAIJ()`, `MatCreateMPIAIJWithSplitArrays()`
3590dfb205c3SBarry Smith @*/
35917087cfbeSBarry Smith PetscErrorCode  MatCreateMPIBAIJWithArrays(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,const PetscInt i[],const PetscInt j[],const PetscScalar a[],Mat *mat)
3592dfb205c3SBarry Smith {
3593dfb205c3SBarry Smith   PetscFunctionBegin;
35945f80ce2aSJacob Faibussowitsch   PetscCheck(!i[0],PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"i (row indices) must start with 0");
35955f80ce2aSJacob Faibussowitsch   PetscCheck(m >= 0,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"local number of rows (m) cannot be PETSC_DECIDE, or negative");
35969566063dSJacob Faibussowitsch   PetscCall(MatCreate(comm,mat));
35979566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(*mat,m,n,M,N));
35989566063dSJacob Faibussowitsch   PetscCall(MatSetType(*mat,MATMPIBAIJ));
35999566063dSJacob Faibussowitsch   PetscCall(MatSetBlockSize(*mat,bs));
36009566063dSJacob Faibussowitsch   PetscCall(MatSetUp(*mat));
36019566063dSJacob Faibussowitsch   PetscCall(MatSetOption(*mat,MAT_ROW_ORIENTED,PETSC_FALSE));
36029566063dSJacob Faibussowitsch   PetscCall(MatMPIBAIJSetPreallocationCSR(*mat,bs,i,j,a));
36039566063dSJacob Faibussowitsch   PetscCall(MatSetOption(*mat,MAT_ROW_ORIENTED,PETSC_TRUE));
3604dfb205c3SBarry Smith   PetscFunctionReturn(0);
3605dfb205c3SBarry Smith }
3606e561ad89SHong Zhang 
3607bd153df0SHong Zhang PetscErrorCode MatCreateMPIMatConcatenateSeqMat_MPIBAIJ(MPI_Comm comm,Mat inmat,PetscInt n,MatReuse scall,Mat *outmat)
3608e561ad89SHong Zhang {
3609bd153df0SHong Zhang   PetscInt       m,N,i,rstart,nnz,Ii,bs,cbs;
3610bd153df0SHong Zhang   PetscInt       *indx;
3611bd153df0SHong Zhang   PetscScalar    *values;
3612e561ad89SHong Zhang 
3613e561ad89SHong Zhang   PetscFunctionBegin;
36149566063dSJacob Faibussowitsch   PetscCall(MatGetSize(inmat,&m,&N));
3615bd153df0SHong Zhang   if (scall == MAT_INITIAL_MATRIX) { /* symbolic phase */
3616bd153df0SHong Zhang     Mat_SeqBAIJ    *a = (Mat_SeqBAIJ*)inmat->data;
36172c6ba4edSHong Zhang     PetscInt       *dnz,*onz,mbs,Nbs,nbs;
3618bd153df0SHong Zhang     PetscInt       *bindx,rmax=a->rmax,j;
361977f764caSHong Zhang     PetscMPIInt    rank,size;
3620e561ad89SHong Zhang 
36219566063dSJacob Faibussowitsch     PetscCall(MatGetBlockSizes(inmat,&bs,&cbs));
3622bd153df0SHong Zhang     mbs = m/bs; Nbs = N/cbs;
3623bd153df0SHong Zhang     if (n == PETSC_DECIDE) {
36249566063dSJacob Faibussowitsch       PetscCall(PetscSplitOwnershipBlock(comm,cbs,&n,&N));
3625bd153df0SHong Zhang     }
3626da91a574SPierre Jolivet     nbs = n/cbs;
3627e561ad89SHong Zhang 
36289566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(rmax,&bindx));
3629d0609cedSBarry Smith     MatPreallocateBegin(comm,mbs,nbs,dnz,onz); /* inline function, output __end and __rstart are used below */
363077f764caSHong Zhang 
36319566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Comm_rank(comm,&rank));
36329566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Comm_rank(comm,&size));
363377f764caSHong Zhang     if (rank == size-1) {
363477f764caSHong Zhang       /* Check sum(nbs) = Nbs */
36355f80ce2aSJacob Faibussowitsch       PetscCheck(__end == Nbs,PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"Sum of local block columns %" PetscInt_FMT " != global block columns %" PetscInt_FMT,__end,Nbs);
363677f764caSHong Zhang     }
363777f764caSHong Zhang 
3638d0609cedSBarry Smith     rstart = __rstart; /* block rstart of *outmat; see inline function MatPreallocateBegin */
3639bd153df0SHong Zhang     for (i=0; i<mbs; i++) {
36409566063dSJacob Faibussowitsch       PetscCall(MatGetRow_SeqBAIJ(inmat,i*bs,&nnz,&indx,NULL)); /* non-blocked nnz and indx */
3641647a6520SHong Zhang       nnz = nnz/bs;
3642647a6520SHong Zhang       for (j=0; j<nnz; j++) bindx[j] = indx[j*bs]/bs;
36439566063dSJacob Faibussowitsch       PetscCall(MatPreallocateSet(i+rstart,nnz,bindx,dnz,onz));
36449566063dSJacob Faibussowitsch       PetscCall(MatRestoreRow_SeqBAIJ(inmat,i*bs,&nnz,&indx,NULL));
3645e561ad89SHong Zhang     }
36469566063dSJacob Faibussowitsch     PetscCall(PetscFree(bindx));
3647e561ad89SHong Zhang 
36489566063dSJacob Faibussowitsch     PetscCall(MatCreate(comm,outmat));
36499566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(*outmat,m,n,PETSC_DETERMINE,PETSC_DETERMINE));
36509566063dSJacob Faibussowitsch     PetscCall(MatSetBlockSizes(*outmat,bs,cbs));
36519566063dSJacob Faibussowitsch     PetscCall(MatSetType(*outmat,MATBAIJ));
36529566063dSJacob Faibussowitsch     PetscCall(MatSeqBAIJSetPreallocation(*outmat,bs,0,dnz));
36539566063dSJacob Faibussowitsch     PetscCall(MatMPIBAIJSetPreallocation(*outmat,bs,0,dnz,0,onz));
3654d0609cedSBarry Smith     MatPreallocateEnd(dnz,onz);
36559566063dSJacob Faibussowitsch     PetscCall(MatSetOption(*outmat,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE));
3656e561ad89SHong Zhang   }
3657e561ad89SHong Zhang 
3658bd153df0SHong Zhang   /* numeric phase */
36599566063dSJacob Faibussowitsch   PetscCall(MatGetBlockSizes(inmat,&bs,&cbs));
36609566063dSJacob Faibussowitsch   PetscCall(MatGetOwnershipRange(*outmat,&rstart,NULL));
3661e561ad89SHong Zhang 
3662e561ad89SHong Zhang   for (i=0; i<m; i++) {
36639566063dSJacob Faibussowitsch     PetscCall(MatGetRow_SeqBAIJ(inmat,i,&nnz,&indx,&values));
3664e561ad89SHong Zhang     Ii   = i + rstart;
36659566063dSJacob Faibussowitsch     PetscCall(MatSetValues(*outmat,1,&Ii,nnz,indx,values,INSERT_VALUES));
36669566063dSJacob Faibussowitsch     PetscCall(MatRestoreRow_SeqBAIJ(inmat,i,&nnz,&indx,&values));
3667e561ad89SHong Zhang   }
36689566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(*outmat,MAT_FINAL_ASSEMBLY));
36699566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(*outmat,MAT_FINAL_ASSEMBLY));
3670e561ad89SHong Zhang   PetscFunctionReturn(0);
3671e561ad89SHong Zhang }
3672