xref: /petsc/src/mat/impls/baij/mpi/mpibaij.c (revision 618cc2edce4208c1fcab92c6bd2446942ca564c1)
1c6db04a5SJed Brown #include <../src/mat/impls/baij/mpi/mpibaij.h>   /*I  "petscmat.h"  I*/
2c5d9258eSSatish Balay 
3b51a4376SLisandro Dalcin #include <petsc/private/hashseti.h>
4c6db04a5SJed Brown #include <petscblaslapack.h>
565a92638SMatthew G. Knepley #include <petscsf.h>
679bdfe76SSatish Balay 
77ea3e4caSstefano_zampini #if defined(PETSC_HAVE_HYPRE)
87ea3e4caSstefano_zampini PETSC_INTERN PetscErrorCode MatConvert_AIJ_HYPRE(Mat,MatType,MatReuse,Mat*);
97ea3e4caSstefano_zampini #endif
107ea3e4caSstefano_zampini 
11985db425SBarry Smith PetscErrorCode MatGetRowMaxAbs_MPIBAIJ(Mat A,Vec v,PetscInt idx[])
127843d17aSBarry Smith {
137843d17aSBarry Smith   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)A->data;
14dfbe8321SBarry Smith   PetscErrorCode ierr;
15985db425SBarry Smith   PetscInt       i,*idxb = 0;
1687828ca2SBarry Smith   PetscScalar    *va,*vb;
177843d17aSBarry Smith   Vec            vtmp;
187843d17aSBarry Smith 
197843d17aSBarry Smith   PetscFunctionBegin;
20985db425SBarry Smith   ierr = MatGetRowMaxAbs(a->A,v,idx);CHKERRQ(ierr);
211ebc52fbSHong Zhang   ierr = VecGetArray(v,&va);CHKERRQ(ierr);
22985db425SBarry Smith   if (idx) {
2326fbe8dcSKarl Rupp     for (i=0; i<A->rmap->n; i++) {
2426fbe8dcSKarl Rupp       if (PetscAbsScalar(va[i])) idx[i] += A->cmap->rstart;
2526fbe8dcSKarl Rupp     }
26985db425SBarry Smith   }
277843d17aSBarry Smith 
28d0f46423SBarry Smith   ierr = VecCreateSeq(PETSC_COMM_SELF,A->rmap->n,&vtmp);CHKERRQ(ierr);
29785e854fSJed Brown   if (idx) {ierr = PetscMalloc1(A->rmap->n,&idxb);CHKERRQ(ierr);}
30985db425SBarry Smith   ierr = MatGetRowMaxAbs(a->B,vtmp,idxb);CHKERRQ(ierr);
311ebc52fbSHong Zhang   ierr = VecGetArray(vtmp,&vb);CHKERRQ(ierr);
327843d17aSBarry Smith 
33d0f46423SBarry Smith   for (i=0; i<A->rmap->n; i++) {
3426fbe8dcSKarl Rupp     if (PetscAbsScalar(va[i]) < PetscAbsScalar(vb[i])) {
3526fbe8dcSKarl Rupp       va[i] = vb[i];
3626fbe8dcSKarl Rupp       if (idx) idx[i] = A->cmap->bs*a->garray[idxb[i]/A->cmap->bs] + (idxb[i] % A->cmap->bs);
3726fbe8dcSKarl Rupp     }
387843d17aSBarry Smith   }
397843d17aSBarry Smith 
401ebc52fbSHong Zhang   ierr = VecRestoreArray(v,&va);CHKERRQ(ierr);
411ebc52fbSHong Zhang   ierr = VecRestoreArray(vtmp,&vb);CHKERRQ(ierr);
42c31cb41cSBarry Smith   ierr = PetscFree(idxb);CHKERRQ(ierr);
436bf464f9SBarry Smith   ierr = VecDestroy(&vtmp);CHKERRQ(ierr);
447843d17aSBarry Smith   PetscFunctionReturn(0);
457843d17aSBarry Smith }
467843d17aSBarry Smith 
477087cfbeSBarry Smith PetscErrorCode  MatStoreValues_MPIBAIJ(Mat mat)
487fc3c18eSBarry Smith {
497fc3c18eSBarry Smith   Mat_MPIBAIJ    *aij = (Mat_MPIBAIJ*)mat->data;
50dfbe8321SBarry Smith   PetscErrorCode ierr;
517fc3c18eSBarry Smith 
527fc3c18eSBarry Smith   PetscFunctionBegin;
537fc3c18eSBarry Smith   ierr = MatStoreValues(aij->A);CHKERRQ(ierr);
547fc3c18eSBarry Smith   ierr = MatStoreValues(aij->B);CHKERRQ(ierr);
557fc3c18eSBarry Smith   PetscFunctionReturn(0);
567fc3c18eSBarry Smith }
577fc3c18eSBarry Smith 
587087cfbeSBarry Smith PetscErrorCode  MatRetrieveValues_MPIBAIJ(Mat mat)
597fc3c18eSBarry Smith {
607fc3c18eSBarry Smith   Mat_MPIBAIJ    *aij = (Mat_MPIBAIJ*)mat->data;
61dfbe8321SBarry Smith   PetscErrorCode ierr;
627fc3c18eSBarry Smith 
637fc3c18eSBarry Smith   PetscFunctionBegin;
647fc3c18eSBarry Smith   ierr = MatRetrieveValues(aij->A);CHKERRQ(ierr);
657fc3c18eSBarry Smith   ierr = MatRetrieveValues(aij->B);CHKERRQ(ierr);
667fc3c18eSBarry Smith   PetscFunctionReturn(0);
677fc3c18eSBarry Smith }
687fc3c18eSBarry Smith 
69537820f0SBarry Smith /*
70537820f0SBarry Smith      Local utility routine that creates a mapping from the global column
7157b952d6SSatish Balay    number to the local number in the off-diagonal part of the local
72e06f6af7SJed Brown    storage of the matrix.  This is done in a non scalable way since the
7357b952d6SSatish Balay    length of colmap equals the global matrix length.
7457b952d6SSatish Balay */
75ab9863d7SBarry Smith PetscErrorCode MatCreateColmap_MPIBAIJ_Private(Mat mat)
7657b952d6SSatish Balay {
7757b952d6SSatish Balay   Mat_MPIBAIJ    *baij = (Mat_MPIBAIJ*)mat->data;
7857b952d6SSatish Balay   Mat_SeqBAIJ    *B    = (Mat_SeqBAIJ*)baij->B->data;
796849ba73SBarry Smith   PetscErrorCode ierr;
80d0f46423SBarry Smith   PetscInt       nbs = B->nbs,i,bs=mat->rmap->bs;
8157b952d6SSatish Balay 
82d64ed03dSBarry Smith   PetscFunctionBegin;
83aa482453SBarry Smith #if defined(PETSC_USE_CTABLE)
84e23dfa41SBarry Smith   ierr = PetscTableCreate(baij->nbs,baij->Nbs+1,&baij->colmap);CHKERRQ(ierr);
8548e59246SSatish Balay   for (i=0; i<nbs; i++) {
863861aac3SJed Brown     ierr = PetscTableAdd(baij->colmap,baij->garray[i]+1,i*bs+1,INSERT_VALUES);CHKERRQ(ierr);
8748e59246SSatish Balay   }
8848e59246SSatish Balay #else
89580bdb30SBarry Smith   ierr = PetscCalloc1(baij->Nbs+1,&baij->colmap);CHKERRQ(ierr);
903bb1ff40SBarry Smith   ierr = PetscLogObjectMemory((PetscObject)mat,baij->Nbs*sizeof(PetscInt));CHKERRQ(ierr);
91928fc39bSSatish Balay   for (i=0; i<nbs; i++) baij->colmap[baij->garray[i]] = i*bs+1;
9248e59246SSatish Balay #endif
933a40ed3dSBarry Smith   PetscFunctionReturn(0);
9457b952d6SSatish Balay }
9557b952d6SSatish Balay 
96d40312a9SBarry Smith #define  MatSetValues_SeqBAIJ_A_Private(row,col,value,addv,orow,ocol)       \
9780c1aa95SSatish Balay   { \
9880c1aa95SSatish Balay     brow = row/bs;  \
9980c1aa95SSatish Balay     rp   = aj + ai[brow]; ap = aa + bs2*ai[brow]; \
100ac7a638eSSatish Balay     rmax = aimax[brow]; nrow = ailen[brow]; \
10180c1aa95SSatish Balay     bcol = col/bs; \
10280c1aa95SSatish Balay     ridx = row % bs; cidx = col % bs; \
103ab26458aSBarry Smith     low  = 0; high = nrow; \
104ab26458aSBarry Smith     while (high-low > 3) { \
105ab26458aSBarry Smith       t = (low+high)/2; \
106ab26458aSBarry Smith       if (rp[t] > bcol) high = t; \
107ab26458aSBarry Smith       else              low  = t; \
108ab26458aSBarry Smith     } \
109ab26458aSBarry Smith     for (_i=low; _i<high; _i++) { \
11080c1aa95SSatish Balay       if (rp[_i] > bcol) break; \
11180c1aa95SSatish Balay       if (rp[_i] == bcol) { \
11280c1aa95SSatish Balay         bap = ap +  bs2*_i + bs*cidx + ridx; \
113eada6651SSatish Balay         if (addv == ADD_VALUES) *bap += value;  \
114eada6651SSatish Balay         else                    *bap  = value;  \
115ac7a638eSSatish Balay         goto a_noinsert; \
11680c1aa95SSatish Balay       } \
11780c1aa95SSatish Balay     } \
11889280ab3SLois Curfman McInnes     if (a->nonew == 1) goto a_noinsert; \
119d40312a9SBarry Smith     if (a->nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero at global row/column (%D, %D) into matrix", orow, ocol); \
120fef13f97SBarry Smith     MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,brow,bcol,rmax,aa,ai,aj,rp,ap,aimax,a->nonew,MatScalar); \
12180c1aa95SSatish Balay     N = nrow++ - 1;  \
12280c1aa95SSatish Balay     /* shift up all the later entries in this row */ \
123580bdb30SBarry Smith     ierr = PetscArraymove(rp+_i+1,rp+_i,N-_i+1);CHKERRQ(ierr);\
124580bdb30SBarry Smith     ierr = PetscArraymove(ap+bs2*(_i+1),ap+bs2*_i,bs2*(N-_i+1));CHKERRQ(ierr); \
125580bdb30SBarry Smith     ierr = PetscArrayzero(ap+bs2*_i,bs2);CHKERRQ(ierr);  \
12680c1aa95SSatish Balay     rp[_i]                      = bcol;  \
12780c1aa95SSatish Balay     ap[bs2*_i + bs*cidx + ridx] = value;  \
128ac7a638eSSatish Balay a_noinsert:; \
12980c1aa95SSatish Balay     ailen[brow] = nrow; \
13080c1aa95SSatish Balay   }
13157b952d6SSatish Balay 
132d40312a9SBarry Smith #define  MatSetValues_SeqBAIJ_B_Private(row,col,value,addv,orow,ocol)       \
133ac7a638eSSatish Balay   { \
134ac7a638eSSatish Balay     brow = row/bs;  \
135ac7a638eSSatish Balay     rp   = bj + bi[brow]; ap = ba + bs2*bi[brow]; \
136ac7a638eSSatish Balay     rmax = bimax[brow]; nrow = bilen[brow]; \
137ac7a638eSSatish Balay     bcol = col/bs; \
138ac7a638eSSatish Balay     ridx = row % bs; cidx = col % bs; \
139ac7a638eSSatish Balay     low  = 0; high = nrow; \
140ac7a638eSSatish Balay     while (high-low > 3) { \
141ac7a638eSSatish Balay       t = (low+high)/2; \
142ac7a638eSSatish Balay       if (rp[t] > bcol) high = t; \
143ac7a638eSSatish Balay       else              low  = t; \
144ac7a638eSSatish Balay     } \
145ac7a638eSSatish Balay     for (_i=low; _i<high; _i++) { \
146ac7a638eSSatish Balay       if (rp[_i] > bcol) break; \
147ac7a638eSSatish Balay       if (rp[_i] == bcol) { \
148ac7a638eSSatish Balay         bap = ap +  bs2*_i + bs*cidx + ridx; \
149ac7a638eSSatish Balay         if (addv == ADD_VALUES) *bap += value;  \
150ac7a638eSSatish Balay         else                    *bap  = value;  \
151ac7a638eSSatish Balay         goto b_noinsert; \
152ac7a638eSSatish Balay       } \
153ac7a638eSSatish Balay     } \
15489280ab3SLois Curfman McInnes     if (b->nonew == 1) goto b_noinsert; \
155d40312a9SBarry Smith     if (b->nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero at global row/column  (%D, %D) into matrix", orow, ocol); \
156fef13f97SBarry Smith     MatSeqXAIJReallocateAIJ(B,b->mbs,bs2,nrow,brow,bcol,rmax,ba,bi,bj,rp,ap,bimax,b->nonew,MatScalar); \
157ac7a638eSSatish Balay     N = nrow++ - 1;  \
158ac7a638eSSatish Balay     /* shift up all the later entries in this row */ \
159580bdb30SBarry Smith     ierr = PetscArraymove(rp+_i+1,rp+_i,N-_i+1);CHKERRQ(ierr);\
160580bdb30SBarry Smith     ierr = PetscArraymove(ap+bs2*(_i+1),ap+bs2*_i,bs2*(N-_i+1));CHKERRQ(ierr);\
161580bdb30SBarry Smith     ierr = PetscArrayzero(ap+bs2*_i,bs2);CHKERRQ(ierr);  \
162ac7a638eSSatish Balay     rp[_i]                      = bcol;  \
163ac7a638eSSatish Balay     ap[bs2*_i + bs*cidx + ridx] = value;  \
164ac7a638eSSatish Balay b_noinsert:; \
165ac7a638eSSatish Balay     bilen[brow] = nrow; \
166ac7a638eSSatish Balay   }
167ac7a638eSSatish Balay 
168b24ad042SBarry Smith PetscErrorCode MatSetValues_MPIBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv)
16957b952d6SSatish Balay {
17057b952d6SSatish Balay   Mat_MPIBAIJ    *baij = (Mat_MPIBAIJ*)mat->data;
17193fea6afSBarry Smith   MatScalar      value;
172ace3abfcSBarry Smith   PetscBool      roworiented = baij->roworiented;
173dfbe8321SBarry Smith   PetscErrorCode ierr;
174b24ad042SBarry Smith   PetscInt       i,j,row,col;
175d0f46423SBarry Smith   PetscInt       rstart_orig=mat->rmap->rstart;
176d0f46423SBarry Smith   PetscInt       rend_orig  =mat->rmap->rend,cstart_orig=mat->cmap->rstart;
177d0f46423SBarry Smith   PetscInt       cend_orig  =mat->cmap->rend,bs=mat->rmap->bs;
17857b952d6SSatish Balay 
179eada6651SSatish Balay   /* Some Variables required in the macro */
18080c1aa95SSatish Balay   Mat         A     = baij->A;
18180c1aa95SSatish Balay   Mat_SeqBAIJ *a    = (Mat_SeqBAIJ*)(A)->data;
182b24ad042SBarry Smith   PetscInt    *aimax=a->imax,*ai=a->i,*ailen=a->ilen,*aj=a->j;
1833eda8832SBarry Smith   MatScalar   *aa   =a->a;
184ac7a638eSSatish Balay 
185ac7a638eSSatish Balay   Mat         B     = baij->B;
186ac7a638eSSatish Balay   Mat_SeqBAIJ *b    = (Mat_SeqBAIJ*)(B)->data;
187b24ad042SBarry Smith   PetscInt    *bimax=b->imax,*bi=b->i,*bilen=b->ilen,*bj=b->j;
1883eda8832SBarry Smith   MatScalar   *ba   =b->a;
189ac7a638eSSatish Balay 
190b24ad042SBarry Smith   PetscInt  *rp,ii,nrow,_i,rmax,N,brow,bcol;
191b24ad042SBarry Smith   PetscInt  low,high,t,ridx,cidx,bs2=a->bs2;
1923eda8832SBarry Smith   MatScalar *ap,*bap;
19380c1aa95SSatish Balay 
194d64ed03dSBarry Smith   PetscFunctionBegin;
19557b952d6SSatish Balay   for (i=0; i<m; i++) {
1965ef9f2a5SBarry Smith     if (im[i] < 0) continue;
1972515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
198e32f2f54SBarry Smith     if (im[i] >= mat->rmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],mat->rmap->N-1);
199639f9d9dSBarry Smith #endif
20057b952d6SSatish Balay     if (im[i] >= rstart_orig && im[i] < rend_orig) {
20157b952d6SSatish Balay       row = im[i] - rstart_orig;
20257b952d6SSatish Balay       for (j=0; j<n; j++) {
20357b952d6SSatish Balay         if (in[j] >= cstart_orig && in[j] < cend_orig) {
20457b952d6SSatish Balay           col = in[j] - cstart_orig;
205db4deed7SKarl Rupp           if (roworiented) value = v[i*n+j];
206db4deed7SKarl Rupp           else             value = v[i+j*m];
207d40312a9SBarry Smith           MatSetValues_SeqBAIJ_A_Private(row,col,value,addv,im[i],in[j]);
20873959e64SBarry Smith         } else if (in[j] < 0) continue;
2092515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
210660746e0SBarry Smith         else if (in[j] >= mat->cmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",in[j],mat->cmap->N-1);
211639f9d9dSBarry Smith #endif
21257b952d6SSatish Balay         else {
21357b952d6SSatish Balay           if (mat->was_assembled) {
214905e6a2fSBarry Smith             if (!baij->colmap) {
215ab9863d7SBarry Smith               ierr = MatCreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
216905e6a2fSBarry Smith             }
217aa482453SBarry Smith #if defined(PETSC_USE_CTABLE)
2180f5bd95cSBarry Smith             ierr = PetscTableFind(baij->colmap,in[j]/bs + 1,&col);CHKERRQ(ierr);
219bba1ac68SSatish Balay             col  = col - 1;
22048e59246SSatish Balay #else
221bba1ac68SSatish Balay             col = baij->colmap[in[j]/bs] - 1;
22248e59246SSatish Balay #endif
223c9ef50b2SBarry Smith             if (col < 0 && !((Mat_SeqBAIJ*)(baij->B->data))->nonew) {
224ab9863d7SBarry Smith               ierr = MatDisAssemble_MPIBAIJ(mat);CHKERRQ(ierr);
2258295de27SSatish Balay               col  =  in[j];
2269bf004c3SSatish Balay               /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */
2279bf004c3SSatish Balay               B    = baij->B;
2289bf004c3SSatish Balay               b    = (Mat_SeqBAIJ*)(B)->data;
2299bf004c3SSatish Balay               bimax=b->imax;bi=b->i;bilen=b->ilen;bj=b->j;
2309bf004c3SSatish Balay               ba   =b->a;
231c9ef50b2SBarry Smith             } else if (col < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", im[i], in[j]);
232c9ef50b2SBarry Smith             else col += in[j]%bs;
2338295de27SSatish Balay           } else col = in[j];
234db4deed7SKarl Rupp           if (roworiented) value = v[i*n+j];
235db4deed7SKarl Rupp           else             value = v[i+j*m];
236d40312a9SBarry Smith           MatSetValues_SeqBAIJ_B_Private(row,col,value,addv,im[i],in[j]);
23790da58bdSSatish Balay           /* ierr = MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */
23857b952d6SSatish Balay         }
23957b952d6SSatish Balay       }
240d64ed03dSBarry Smith     } else {
2414cb17eb5SBarry Smith       if (mat->nooffprocentries) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Setting off process row %D even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set",im[i]);
24290f02eecSBarry Smith       if (!baij->donotstash) {
2435080c13bSMatthew G Knepley         mat->assembled = PETSC_FALSE;
244ff2fd236SBarry Smith         if (roworiented) {
245b400d20cSBarry Smith           ierr = MatStashValuesRow_Private(&mat->stash,im[i],n,in,v+i*n,PETSC_FALSE);CHKERRQ(ierr);
246ff2fd236SBarry Smith         } else {
247b400d20cSBarry Smith           ierr = MatStashValuesCol_Private(&mat->stash,im[i],n,in,v+i,m,PETSC_FALSE);CHKERRQ(ierr);
24857b952d6SSatish Balay         }
24957b952d6SSatish Balay       }
25057b952d6SSatish Balay     }
25190f02eecSBarry Smith   }
2523a40ed3dSBarry Smith   PetscFunctionReturn(0);
25357b952d6SSatish Balay }
25457b952d6SSatish Balay 
2558ab52850SBarry Smith PETSC_STATIC_INLINE PetscErrorCode MatSetValuesBlocked_SeqBAIJ_Inlined(Mat A,PetscInt row,PetscInt col,const PetscScalar v[],InsertMode is,PetscInt orow,PetscInt ocol)
256880c6e6aSBarry Smith {
257880c6e6aSBarry Smith   Mat_SeqBAIJ       *a = (Mat_SeqBAIJ*)A->data;
2588ab52850SBarry Smith   PetscInt          *rp,low,high,t,ii,jj,nrow,i,rmax,N;
259880c6e6aSBarry Smith   PetscInt          *imax=a->imax,*ai=a->i,*ailen=a->ilen;
260880c6e6aSBarry Smith   PetscErrorCode    ierr;
2618ab52850SBarry Smith   PetscInt          *aj        =a->j,nonew=a->nonew,bs2=a->bs2,bs=A->rmap->bs;
262880c6e6aSBarry Smith   PetscBool         roworiented=a->roworiented;
263880c6e6aSBarry Smith   const PetscScalar *value     = v;
264880c6e6aSBarry Smith   MatScalar         *ap,*aa = a->a,*bap;
265880c6e6aSBarry Smith 
266880c6e6aSBarry Smith   PetscFunctionBegin;
267880c6e6aSBarry Smith   rp   = aj + ai[row];
268880c6e6aSBarry Smith   ap   = aa + bs2*ai[row];
269880c6e6aSBarry Smith   rmax = imax[row];
270880c6e6aSBarry Smith   nrow = ailen[row];
2718ab52850SBarry Smith   value = v;
2728ab52850SBarry Smith   low = 0;
2738ab52850SBarry Smith   high = nrow;
274880c6e6aSBarry Smith   while (high-low > 7) {
275880c6e6aSBarry Smith     t = (low+high)/2;
276880c6e6aSBarry Smith     if (rp[t] > col) high = t;
277880c6e6aSBarry Smith     else             low  = t;
278880c6e6aSBarry Smith   }
279880c6e6aSBarry Smith   for (i=low; i<high; i++) {
280880c6e6aSBarry Smith     if (rp[i] > col) break;
281880c6e6aSBarry Smith     if (rp[i] == col) {
282880c6e6aSBarry Smith       bap = ap +  bs2*i;
283880c6e6aSBarry Smith       if (roworiented) {
284880c6e6aSBarry Smith         if (is == ADD_VALUES) {
2858ab52850SBarry Smith           for (ii=0; ii<bs; ii++) {
286880c6e6aSBarry Smith             for (jj=ii; jj<bs2; jj+=bs) {
287880c6e6aSBarry Smith               bap[jj] += *value++;
288880c6e6aSBarry Smith             }
289880c6e6aSBarry Smith           }
290880c6e6aSBarry Smith         } else {
2918ab52850SBarry Smith           for (ii=0; ii<bs; ii++) {
292880c6e6aSBarry Smith             for (jj=ii; jj<bs2; jj+=bs) {
293880c6e6aSBarry Smith               bap[jj] = *value++;
294880c6e6aSBarry Smith             }
295880c6e6aSBarry Smith           }
296880c6e6aSBarry Smith         }
297880c6e6aSBarry Smith       } else {
298880c6e6aSBarry Smith         if (is == ADD_VALUES) {
2998ab52850SBarry Smith           for (ii=0; ii<bs; ii++,value+=bs) {
300880c6e6aSBarry Smith             for (jj=0; jj<bs; jj++) {
301880c6e6aSBarry Smith               bap[jj] += value[jj];
302880c6e6aSBarry Smith             }
303880c6e6aSBarry Smith             bap += bs;
304880c6e6aSBarry Smith           }
305880c6e6aSBarry Smith         } else {
3068ab52850SBarry Smith           for (ii=0; ii<bs; ii++,value+=bs) {
307880c6e6aSBarry Smith             for (jj=0; jj<bs; jj++) {
308880c6e6aSBarry Smith               bap[jj]  = value[jj];
309880c6e6aSBarry Smith             }
310880c6e6aSBarry Smith             bap += bs;
311880c6e6aSBarry Smith           }
312880c6e6aSBarry Smith         }
313880c6e6aSBarry Smith       }
314880c6e6aSBarry Smith       goto noinsert2;
315880c6e6aSBarry Smith     }
316880c6e6aSBarry Smith   }
317880c6e6aSBarry Smith   if (nonew == 1) goto noinsert2;
318880c6e6aSBarry Smith   if (nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new global block indexed nonzero block (%D, %D) in the matrix", orow, ocol);
319880c6e6aSBarry Smith   MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,row,col,rmax,aa,ai,aj,rp,ap,imax,nonew,MatScalar);
320880c6e6aSBarry Smith   N = nrow++ - 1; high++;
321880c6e6aSBarry Smith   /* shift up all the later entries in this row */
322580bdb30SBarry Smith   ierr = PetscArraymove(rp+i+1,rp+i,N-i+1);CHKERRQ(ierr);
323580bdb30SBarry Smith   ierr = PetscArraymove(ap+bs2*(i+1),ap+bs2*i,bs2*(N-i+1));CHKERRQ(ierr);
324880c6e6aSBarry Smith   rp[i] = col;
325880c6e6aSBarry Smith   bap   = ap +  bs2*i;
326880c6e6aSBarry Smith   if (roworiented) {
3278ab52850SBarry Smith     for (ii=0; ii<bs; ii++) {
328880c6e6aSBarry Smith       for (jj=ii; jj<bs2; jj+=bs) {
329880c6e6aSBarry Smith         bap[jj] = *value++;
330880c6e6aSBarry Smith       }
331880c6e6aSBarry Smith     }
332880c6e6aSBarry Smith   } else {
3338ab52850SBarry Smith     for (ii=0; ii<bs; ii++) {
334880c6e6aSBarry Smith       for (jj=0; jj<bs; jj++) {
335880c6e6aSBarry Smith         *bap++ = *value++;
336880c6e6aSBarry Smith       }
337880c6e6aSBarry Smith     }
338880c6e6aSBarry Smith   }
339880c6e6aSBarry Smith   noinsert2:;
340880c6e6aSBarry Smith   ailen[row] = nrow;
341880c6e6aSBarry Smith   PetscFunctionReturn(0);
342880c6e6aSBarry Smith }
343880c6e6aSBarry Smith 
3448ab52850SBarry Smith /*
3458ab52850SBarry Smith     This routine should be optimized so that the block copy at ** Here a copy is required ** below is not needed
3468ab52850SBarry Smith     by passing additional stride information into the MatSetValuesBlocked_SeqBAIJ_Inlined() routine
3478ab52850SBarry Smith */
34897e5c40aSBarry Smith PetscErrorCode MatSetValuesBlocked_MPIBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv)
349ab26458aSBarry Smith {
350ab26458aSBarry Smith   Mat_MPIBAIJ       *baij = (Mat_MPIBAIJ*)mat->data;
351dd6ea824SBarry Smith   const PetscScalar *value;
352f15d580aSBarry Smith   MatScalar         *barray     = baij->barray;
353ace3abfcSBarry Smith   PetscBool         roworiented = baij->roworiented;
354dfbe8321SBarry Smith   PetscErrorCode    ierr;
355899cda47SBarry Smith   PetscInt          i,j,ii,jj,row,col,rstart=baij->rstartbs;
356899cda47SBarry Smith   PetscInt          rend=baij->rendbs,cstart=baij->cstartbs,stepval;
357d0f46423SBarry Smith   PetscInt          cend=baij->cendbs,bs=mat->rmap->bs,bs2=baij->bs2;
358ab26458aSBarry Smith 
359b16ae2b1SBarry Smith   PetscFunctionBegin;
36030793edcSSatish Balay   if (!barray) {
361785e854fSJed Brown     ierr         = PetscMalloc1(bs2,&barray);CHKERRQ(ierr);
36282502324SSatish Balay     baij->barray = barray;
36330793edcSSatish Balay   }
36430793edcSSatish Balay 
36526fbe8dcSKarl Rupp   if (roworiented) stepval = (n-1)*bs;
36626fbe8dcSKarl Rupp   else stepval = (m-1)*bs;
36726fbe8dcSKarl Rupp 
368ab26458aSBarry Smith   for (i=0; i<m; i++) {
3695ef9f2a5SBarry Smith     if (im[i] < 0) continue;
3702515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
371bb003d0fSBarry Smith     if (im[i] >= baij->Mbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Block indexed row too large %D max %D",im[i],baij->Mbs-1);
372ab26458aSBarry Smith #endif
373ab26458aSBarry Smith     if (im[i] >= rstart && im[i] < rend) {
374ab26458aSBarry Smith       row = im[i] - rstart;
375ab26458aSBarry Smith       for (j=0; j<n; j++) {
37615b57d14SSatish Balay         /* If NumCol = 1 then a copy is not required */
37715b57d14SSatish Balay         if ((roworiented) && (n == 1)) {
378f15d580aSBarry Smith           barray = (MatScalar*)v + i*bs2;
37915b57d14SSatish Balay         } else if ((!roworiented) && (m == 1)) {
380f15d580aSBarry Smith           barray = (MatScalar*)v + j*bs2;
38115b57d14SSatish Balay         } else { /* Here a copy is required */
382ab26458aSBarry Smith           if (roworiented) {
38353ef36baSBarry Smith             value = v + (i*(stepval+bs) + j)*bs;
384ab26458aSBarry Smith           } else {
38553ef36baSBarry Smith             value = v + (j*(stepval+bs) + i)*bs;
386abef11f7SSatish Balay           }
38753ef36baSBarry Smith           for (ii=0; ii<bs; ii++,value+=bs+stepval) {
38826fbe8dcSKarl Rupp             for (jj=0; jj<bs; jj++) barray[jj] = value[jj];
38953ef36baSBarry Smith             barray += bs;
39047513183SBarry Smith           }
39130793edcSSatish Balay           barray -= bs2;
39215b57d14SSatish Balay         }
393abef11f7SSatish Balay 
394abef11f7SSatish Balay         if (in[j] >= cstart && in[j] < cend) {
395abef11f7SSatish Balay           col  = in[j] - cstart;
3968ab52850SBarry Smith           ierr = MatSetValuesBlocked_SeqBAIJ_Inlined(baij->A,row,col,barray,addv,im[i],in[j]);CHKERRQ(ierr);
39726fbe8dcSKarl Rupp         } else if (in[j] < 0) continue;
3982515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
3998ab52850SBarry Smith         else if (in[j] >= baij->Nbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Block indexed column too large %D max %D",in[j],baij->Nbs-1);
400ab26458aSBarry Smith #endif
401ab26458aSBarry Smith         else {
402ab26458aSBarry Smith           if (mat->was_assembled) {
403ab26458aSBarry Smith             if (!baij->colmap) {
404ab9863d7SBarry Smith               ierr = MatCreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
405ab26458aSBarry Smith             }
406a5eb4965SSatish Balay 
4072515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
408aa482453SBarry Smith #if defined(PETSC_USE_CTABLE)
409b24ad042SBarry Smith             { PetscInt data;
4100f5bd95cSBarry Smith               ierr = PetscTableFind(baij->colmap,in[j]+1,&data);CHKERRQ(ierr);
411e32f2f54SBarry Smith               if ((data - 1) % bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap");
412fa46199cSSatish Balay             }
41348e59246SSatish Balay #else
414e32f2f54SBarry Smith             if ((baij->colmap[in[j]] - 1) % bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap");
415a5eb4965SSatish Balay #endif
41648e59246SSatish Balay #endif
417aa482453SBarry Smith #if defined(PETSC_USE_CTABLE)
4180f5bd95cSBarry Smith             ierr = PetscTableFind(baij->colmap,in[j]+1,&col);CHKERRQ(ierr);
419fa46199cSSatish Balay             col  = (col - 1)/bs;
42048e59246SSatish Balay #else
421a5eb4965SSatish Balay             col = (baij->colmap[in[j]] - 1)/bs;
42248e59246SSatish Balay #endif
4230e9bae81SBarry Smith             if (col < 0 && !((Mat_SeqBAIJ*)(baij->B->data))->nonew) {
424ab9863d7SBarry Smith               ierr = MatDisAssemble_MPIBAIJ(mat);CHKERRQ(ierr);
425ab26458aSBarry Smith               col  =  in[j];
426bb003d0fSBarry Smith             } else if (col < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new blocked indexed nonzero block (%D, %D) into matrix",im[i],in[j]);
427db4deed7SKarl Rupp           } else col = in[j];
4288ab52850SBarry Smith           ierr = MatSetValuesBlocked_SeqBAIJ_Inlined(baij->B,row,col,barray,addv,im[i],in[j]);CHKERRQ(ierr);
429ab26458aSBarry Smith         }
430ab26458aSBarry Smith       }
431d64ed03dSBarry Smith     } else {
432bb003d0fSBarry Smith       if (mat->nooffprocentries) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Setting off process block indexed row %D even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set",im[i]);
433ab26458aSBarry Smith       if (!baij->donotstash) {
434ff2fd236SBarry Smith         if (roworiented) {
4356fa18ffdSBarry Smith           ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
436ff2fd236SBarry Smith         } else {
4376fa18ffdSBarry Smith           ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
438ff2fd236SBarry Smith         }
439abef11f7SSatish Balay       }
440ab26458aSBarry Smith     }
441ab26458aSBarry Smith   }
4423a40ed3dSBarry Smith   PetscFunctionReturn(0);
443ab26458aSBarry Smith }
4446fa18ffdSBarry Smith 
4450bdbc534SSatish Balay #define HASH_KEY 0.6180339887
446b24ad042SBarry Smith #define HASH(size,key,tmp) (tmp = (key)*HASH_KEY,(PetscInt)((size)*(tmp-(PetscInt)tmp)))
447b24ad042SBarry Smith /* #define HASH(size,key) ((PetscInt)((size)*fmod(((key)*HASH_KEY),1))) */
448b24ad042SBarry Smith /* #define HASH(size,key,tmp) ((PetscInt)((size)*fmod(((key)*HASH_KEY),1))) */
44997e5c40aSBarry Smith PetscErrorCode MatSetValues_MPIBAIJ_HT(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv)
4500bdbc534SSatish Balay {
4510bdbc534SSatish Balay   Mat_MPIBAIJ    *baij       = (Mat_MPIBAIJ*)mat->data;
452ace3abfcSBarry Smith   PetscBool      roworiented = baij->roworiented;
453dfbe8321SBarry Smith   PetscErrorCode ierr;
454b24ad042SBarry Smith   PetscInt       i,j,row,col;
455d0f46423SBarry Smith   PetscInt       rstart_orig=mat->rmap->rstart;
456d0f46423SBarry Smith   PetscInt       rend_orig  =mat->rmap->rend,Nbs=baij->Nbs;
457d0f46423SBarry Smith   PetscInt       h1,key,size=baij->ht_size,bs=mat->rmap->bs,*HT=baij->ht,idx;
458329f5518SBarry Smith   PetscReal      tmp;
4593eda8832SBarry Smith   MatScalar      **HD = baij->hd,value;
4602515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
461b24ad042SBarry Smith   PetscInt       total_ct=baij->ht_total_ct,insert_ct=baij->ht_insert_ct;
4624a15367fSSatish Balay #endif
4630bdbc534SSatish Balay 
4640bdbc534SSatish Balay   PetscFunctionBegin;
4650bdbc534SSatish Balay   for (i=0; i<m; i++) {
4662515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
467e32f2f54SBarry Smith     if (im[i] < 0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative row");
468e32f2f54SBarry Smith     if (im[i] >= mat->rmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],mat->rmap->N-1);
4690bdbc534SSatish Balay #endif
4700bdbc534SSatish Balay     row = im[i];
471c2760754SSatish Balay     if (row >= rstart_orig && row < rend_orig) {
4720bdbc534SSatish Balay       for (j=0; j<n; j++) {
4730bdbc534SSatish Balay         col = in[j];
474db4deed7SKarl Rupp         if (roworiented) value = v[i*n+j];
475db4deed7SKarl Rupp         else             value = v[i+j*m];
476b24ad042SBarry Smith         /* Look up PetscInto the Hash Table */
477c2760754SSatish Balay         key = (row/bs)*Nbs+(col/bs)+1;
478c2760754SSatish Balay         h1  = HASH(size,key,tmp);
4790bdbc534SSatish Balay 
480c2760754SSatish Balay 
481c2760754SSatish Balay         idx = h1;
4822515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
483187ce0cbSSatish Balay         insert_ct++;
484187ce0cbSSatish Balay         total_ct++;
485187ce0cbSSatish Balay         if (HT[idx] != key) {
486187ce0cbSSatish Balay           for (idx=h1; (idx<size) && (HT[idx]!=key); idx++,total_ct++) ;
487187ce0cbSSatish Balay           if (idx == size) {
488187ce0cbSSatish Balay             for (idx=0; (idx<h1) && (HT[idx]!=key); idx++,total_ct++) ;
489f23aa3ddSBarry Smith             if (idx == h1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"(%D,%D) has no entry in the hash table", row, col);
490187ce0cbSSatish Balay           }
491187ce0cbSSatish Balay         }
492187ce0cbSSatish Balay #else
493c2760754SSatish Balay         if (HT[idx] != key) {
494c2760754SSatish Balay           for (idx=h1; (idx<size) && (HT[idx]!=key); idx++) ;
495c2760754SSatish Balay           if (idx == size) {
496c2760754SSatish Balay             for (idx=0; (idx<h1) && (HT[idx]!=key); idx++) ;
497f23aa3ddSBarry Smith             if (idx == h1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"(%D,%D) has no entry in the hash table", row, col);
498c2760754SSatish Balay           }
499c2760754SSatish Balay         }
500187ce0cbSSatish Balay #endif
501c2760754SSatish Balay         /* A HASH table entry is found, so insert the values at the correct address */
502c2760754SSatish Balay         if (addv == ADD_VALUES) *(HD[idx]+ (col % bs)*bs + (row % bs)) += value;
503c2760754SSatish Balay         else                    *(HD[idx]+ (col % bs)*bs + (row % bs))  = value;
5040bdbc534SSatish Balay       }
50526fbe8dcSKarl Rupp     } else if (!baij->donotstash) {
506ff2fd236SBarry Smith       if (roworiented) {
507b400d20cSBarry Smith         ierr = MatStashValuesRow_Private(&mat->stash,im[i],n,in,v+i*n,PETSC_FALSE);CHKERRQ(ierr);
508ff2fd236SBarry Smith       } else {
509b400d20cSBarry Smith         ierr = MatStashValuesCol_Private(&mat->stash,im[i],n,in,v+i,m,PETSC_FALSE);CHKERRQ(ierr);
5100bdbc534SSatish Balay       }
5110bdbc534SSatish Balay     }
5120bdbc534SSatish Balay   }
5132515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
514abf3b562SBarry Smith   baij->ht_total_ct  += total_ct;
515abf3b562SBarry Smith   baij->ht_insert_ct += insert_ct;
516187ce0cbSSatish Balay #endif
5170bdbc534SSatish Balay   PetscFunctionReturn(0);
5180bdbc534SSatish Balay }
5190bdbc534SSatish Balay 
52097e5c40aSBarry Smith PetscErrorCode MatSetValuesBlocked_MPIBAIJ_HT(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv)
5210bdbc534SSatish Balay {
5220bdbc534SSatish Balay   Mat_MPIBAIJ       *baij       = (Mat_MPIBAIJ*)mat->data;
523ace3abfcSBarry Smith   PetscBool         roworiented = baij->roworiented;
524dfbe8321SBarry Smith   PetscErrorCode    ierr;
525b24ad042SBarry Smith   PetscInt          i,j,ii,jj,row,col;
526899cda47SBarry Smith   PetscInt          rstart=baij->rstartbs;
527d0f46423SBarry Smith   PetscInt          rend  =mat->rmap->rend,stepval,bs=mat->rmap->bs,bs2=baij->bs2,nbs2=n*bs2;
528b24ad042SBarry Smith   PetscInt          h1,key,size=baij->ht_size,idx,*HT=baij->ht,Nbs=baij->Nbs;
529329f5518SBarry Smith   PetscReal         tmp;
5303eda8832SBarry Smith   MatScalar         **HD = baij->hd,*baij_a;
531dd6ea824SBarry Smith   const PetscScalar *v_t,*value;
5322515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
533b24ad042SBarry Smith   PetscInt          total_ct=baij->ht_total_ct,insert_ct=baij->ht_insert_ct;
5344a15367fSSatish Balay #endif
5350bdbc534SSatish Balay 
536d0a41580SSatish Balay   PetscFunctionBegin;
53726fbe8dcSKarl Rupp   if (roworiented) stepval = (n-1)*bs;
53826fbe8dcSKarl Rupp   else stepval = (m-1)*bs;
53926fbe8dcSKarl Rupp 
5400bdbc534SSatish Balay   for (i=0; i<m; i++) {
5412515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
542e32f2f54SBarry Smith     if (im[i] < 0) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %D",im[i]);
543e32f2f54SBarry Smith     if (im[i] >= baij->Mbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],baij->Mbs-1);
5440bdbc534SSatish Balay #endif
5450bdbc534SSatish Balay     row = im[i];
546ab715e2cSSatish Balay     v_t = v + i*nbs2;
547c2760754SSatish Balay     if (row >= rstart && row < rend) {
5480bdbc534SSatish Balay       for (j=0; j<n; j++) {
5490bdbc534SSatish Balay         col = in[j];
5500bdbc534SSatish Balay 
5510bdbc534SSatish Balay         /* Look up into the Hash Table */
552c2760754SSatish Balay         key = row*Nbs+col+1;
553c2760754SSatish Balay         h1  = HASH(size,key,tmp);
5540bdbc534SSatish Balay 
555c2760754SSatish Balay         idx = h1;
5562515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
557187ce0cbSSatish Balay         total_ct++;
558187ce0cbSSatish Balay         insert_ct++;
559187ce0cbSSatish Balay         if (HT[idx] != key) {
560187ce0cbSSatish Balay           for (idx=h1; (idx<size) && (HT[idx]!=key); idx++,total_ct++) ;
561187ce0cbSSatish Balay           if (idx == size) {
562187ce0cbSSatish Balay             for (idx=0; (idx<h1) && (HT[idx]!=key); idx++,total_ct++) ;
563f23aa3ddSBarry Smith             if (idx == h1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"(%D,%D) has no entry in the hash table", row, col);
564187ce0cbSSatish Balay           }
565187ce0cbSSatish Balay         }
566187ce0cbSSatish Balay #else
567c2760754SSatish Balay         if (HT[idx] != key) {
568c2760754SSatish Balay           for (idx=h1; (idx<size) && (HT[idx]!=key); idx++) ;
569c2760754SSatish Balay           if (idx == size) {
570c2760754SSatish Balay             for (idx=0; (idx<h1) && (HT[idx]!=key); idx++) ;
571f23aa3ddSBarry Smith             if (idx == h1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"(%D,%D) has no entry in the hash table", row, col);
572c2760754SSatish Balay           }
573c2760754SSatish Balay         }
574187ce0cbSSatish Balay #endif
575c2760754SSatish Balay         baij_a = HD[idx];
5760bdbc534SSatish Balay         if (roworiented) {
577c2760754SSatish Balay           /*value = v + i*(stepval+bs)*bs + j*bs;*/
578187ce0cbSSatish Balay           /* value = v + (i*(stepval+bs)+j)*bs; */
579187ce0cbSSatish Balay           value = v_t;
580187ce0cbSSatish Balay           v_t  += bs;
581fef45726SSatish Balay           if (addv == ADD_VALUES) {
582c2760754SSatish Balay             for (ii=0; ii<bs; ii++,value+=stepval) {
583c2760754SSatish Balay               for (jj=ii; jj<bs2; jj+=bs) {
584fef45726SSatish Balay                 baij_a[jj] += *value++;
585b4cc0f5aSSatish Balay               }
586b4cc0f5aSSatish Balay             }
587fef45726SSatish Balay           } else {
588c2760754SSatish Balay             for (ii=0; ii<bs; ii++,value+=stepval) {
589c2760754SSatish Balay               for (jj=ii; jj<bs2; jj+=bs) {
590fef45726SSatish Balay                 baij_a[jj] = *value++;
591fef45726SSatish Balay               }
592fef45726SSatish Balay             }
593fef45726SSatish Balay           }
5940bdbc534SSatish Balay         } else {
5950bdbc534SSatish Balay           value = v + j*(stepval+bs)*bs + i*bs;
596fef45726SSatish Balay           if (addv == ADD_VALUES) {
597b4cc0f5aSSatish Balay             for (ii=0; ii<bs; ii++,value+=stepval,baij_a+=bs) {
5980bdbc534SSatish Balay               for (jj=0; jj<bs; jj++) {
599fef45726SSatish Balay                 baij_a[jj] += *value++;
600fef45726SSatish Balay               }
601fef45726SSatish Balay             }
602fef45726SSatish Balay           } else {
603fef45726SSatish Balay             for (ii=0; ii<bs; ii++,value+=stepval,baij_a+=bs) {
604fef45726SSatish Balay               for (jj=0; jj<bs; jj++) {
605fef45726SSatish Balay                 baij_a[jj] = *value++;
606fef45726SSatish Balay               }
607b4cc0f5aSSatish Balay             }
6080bdbc534SSatish Balay           }
6090bdbc534SSatish Balay         }
6100bdbc534SSatish Balay       }
6110bdbc534SSatish Balay     } else {
6120bdbc534SSatish Balay       if (!baij->donotstash) {
6130bdbc534SSatish Balay         if (roworiented) {
6148798bf22SSatish Balay           ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
6150bdbc534SSatish Balay         } else {
6168798bf22SSatish Balay           ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
6170bdbc534SSatish Balay         }
6180bdbc534SSatish Balay       }
6190bdbc534SSatish Balay     }
6200bdbc534SSatish Balay   }
6212515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
622abf3b562SBarry Smith   baij->ht_total_ct  += total_ct;
623abf3b562SBarry Smith   baij->ht_insert_ct += insert_ct;
624187ce0cbSSatish Balay #endif
6250bdbc534SSatish Balay   PetscFunctionReturn(0);
6260bdbc534SSatish Balay }
627133cdb44SSatish Balay 
628b24ad042SBarry Smith PetscErrorCode MatGetValues_MPIBAIJ(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[])
629d6de1c52SSatish Balay {
630d6de1c52SSatish Balay   Mat_MPIBAIJ    *baij = (Mat_MPIBAIJ*)mat->data;
6316849ba73SBarry Smith   PetscErrorCode ierr;
632d0f46423SBarry Smith   PetscInt       bs       = mat->rmap->bs,i,j,bsrstart = mat->rmap->rstart,bsrend = mat->rmap->rend;
633d0f46423SBarry Smith   PetscInt       bscstart = mat->cmap->rstart,bscend = mat->cmap->rend,row,col,data;
634d6de1c52SSatish Balay 
635133cdb44SSatish Balay   PetscFunctionBegin;
636d6de1c52SSatish Balay   for (i=0; i<m; i++) {
637e32f2f54SBarry Smith     if (idxm[i] < 0) continue; /* SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %D",idxm[i]);*/
638e32f2f54SBarry Smith     if (idxm[i] >= mat->rmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",idxm[i],mat->rmap->N-1);
639d6de1c52SSatish Balay     if (idxm[i] >= bsrstart && idxm[i] < bsrend) {
640d6de1c52SSatish Balay       row = idxm[i] - bsrstart;
641d6de1c52SSatish Balay       for (j=0; j<n; j++) {
642e32f2f54SBarry Smith         if (idxn[j] < 0) continue; /* SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative column: %D",idxn[j]); */
643e32f2f54SBarry Smith         if (idxn[j] >= mat->cmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",idxn[j],mat->cmap->N-1);
644d6de1c52SSatish Balay         if (idxn[j] >= bscstart && idxn[j] < bscend) {
645d6de1c52SSatish Balay           col  = idxn[j] - bscstart;
64698dd23e9SBarry Smith           ierr = MatGetValues_SeqBAIJ(baij->A,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr);
647d64ed03dSBarry Smith         } else {
648905e6a2fSBarry Smith           if (!baij->colmap) {
649ab9863d7SBarry Smith             ierr = MatCreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
650905e6a2fSBarry Smith           }
651aa482453SBarry Smith #if defined(PETSC_USE_CTABLE)
6520f5bd95cSBarry Smith           ierr = PetscTableFind(baij->colmap,idxn[j]/bs+1,&data);CHKERRQ(ierr);
653fa46199cSSatish Balay           data--;
65448e59246SSatish Balay #else
65548e59246SSatish Balay           data = baij->colmap[idxn[j]/bs]-1;
65648e59246SSatish Balay #endif
65748e59246SSatish Balay           if ((data < 0) || (baij->garray[data/bs] != idxn[j]/bs)) *(v+i*n+j) = 0.0;
658d9d09a02SSatish Balay           else {
65948e59246SSatish Balay             col  = data + idxn[j]%bs;
66098dd23e9SBarry Smith             ierr = MatGetValues_SeqBAIJ(baij->B,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr);
661d6de1c52SSatish Balay           }
662d6de1c52SSatish Balay         }
663d6de1c52SSatish Balay       }
664f23aa3ddSBarry Smith     } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local values currently supported");
665d6de1c52SSatish Balay   }
6663a40ed3dSBarry Smith   PetscFunctionReturn(0);
667d6de1c52SSatish Balay }
668d6de1c52SSatish Balay 
669dfbe8321SBarry Smith PetscErrorCode MatNorm_MPIBAIJ(Mat mat,NormType type,PetscReal *nrm)
670d6de1c52SSatish Balay {
671d6de1c52SSatish Balay   Mat_MPIBAIJ    *baij = (Mat_MPIBAIJ*)mat->data;
672d6de1c52SSatish Balay   Mat_SeqBAIJ    *amat = (Mat_SeqBAIJ*)baij->A->data,*bmat = (Mat_SeqBAIJ*)baij->B->data;
673dfbe8321SBarry Smith   PetscErrorCode ierr;
674d0f46423SBarry Smith   PetscInt       i,j,bs2=baij->bs2,bs=baij->A->rmap->bs,nz,row,col;
675329f5518SBarry Smith   PetscReal      sum = 0.0;
6763eda8832SBarry Smith   MatScalar      *v;
677d6de1c52SSatish Balay 
678d64ed03dSBarry Smith   PetscFunctionBegin;
679d6de1c52SSatish Balay   if (baij->size == 1) {
680064f8208SBarry Smith     ierr =  MatNorm(baij->A,type,nrm);CHKERRQ(ierr);
681d6de1c52SSatish Balay   } else {
682d6de1c52SSatish Balay     if (type == NORM_FROBENIUS) {
683d6de1c52SSatish Balay       v  = amat->a;
6848a62d963SHong Zhang       nz = amat->nz*bs2;
6858a62d963SHong Zhang       for (i=0; i<nz; i++) {
686329f5518SBarry Smith         sum += PetscRealPart(PetscConj(*v)*(*v)); v++;
687d6de1c52SSatish Balay       }
688d6de1c52SSatish Balay       v  = bmat->a;
6898a62d963SHong Zhang       nz = bmat->nz*bs2;
6908a62d963SHong Zhang       for (i=0; i<nz; i++) {
691329f5518SBarry Smith         sum += PetscRealPart(PetscConj(*v)*(*v)); v++;
692d6de1c52SSatish Balay       }
693b2566f29SBarry Smith       ierr = MPIU_Allreduce(&sum,nrm,1,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
6948f1a2a5eSBarry Smith       *nrm = PetscSqrtReal(*nrm);
6958a62d963SHong Zhang     } else if (type == NORM_1) { /* max column sum */
6968a62d963SHong Zhang       PetscReal *tmp,*tmp2;
697899cda47SBarry Smith       PetscInt  *jj,*garray=baij->garray,cstart=baij->rstartbs;
6988f8f2f0dSBarry Smith       ierr = PetscCalloc1(mat->cmap->N,&tmp);CHKERRQ(ierr);
699857a15f1SBarry Smith       ierr = PetscMalloc1(mat->cmap->N,&tmp2);CHKERRQ(ierr);
7008a62d963SHong Zhang       v    = amat->a; jj = amat->j;
7018a62d963SHong Zhang       for (i=0; i<amat->nz; i++) {
7028a62d963SHong Zhang         for (j=0; j<bs; j++) {
7038a62d963SHong Zhang           col = bs*(cstart + *jj) + j; /* column index */
7048a62d963SHong Zhang           for (row=0; row<bs; row++) {
7058a62d963SHong Zhang             tmp[col] += PetscAbsScalar(*v);  v++;
7068a62d963SHong Zhang           }
7078a62d963SHong Zhang         }
7088a62d963SHong Zhang         jj++;
7098a62d963SHong Zhang       }
7108a62d963SHong Zhang       v = bmat->a; jj = bmat->j;
7118a62d963SHong Zhang       for (i=0; i<bmat->nz; i++) {
7128a62d963SHong Zhang         for (j=0; j<bs; j++) {
7138a62d963SHong Zhang           col = bs*garray[*jj] + j;
7148a62d963SHong Zhang           for (row=0; row<bs; row++) {
7158a62d963SHong Zhang             tmp[col] += PetscAbsScalar(*v); v++;
7168a62d963SHong Zhang           }
7178a62d963SHong Zhang         }
7188a62d963SHong Zhang         jj++;
7198a62d963SHong Zhang       }
720b2566f29SBarry Smith       ierr = MPIU_Allreduce(tmp,tmp2,mat->cmap->N,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
7218a62d963SHong Zhang       *nrm = 0.0;
722d0f46423SBarry Smith       for (j=0; j<mat->cmap->N; j++) {
7238a62d963SHong Zhang         if (tmp2[j] > *nrm) *nrm = tmp2[j];
7248a62d963SHong Zhang       }
725857a15f1SBarry Smith       ierr = PetscFree(tmp);CHKERRQ(ierr);
726857a15f1SBarry Smith       ierr = PetscFree(tmp2);CHKERRQ(ierr);
7278a62d963SHong Zhang     } else if (type == NORM_INFINITY) { /* max row sum */
728577dd1f9SKris Buschelman       PetscReal *sums;
729785e854fSJed Brown       ierr = PetscMalloc1(bs,&sums);CHKERRQ(ierr);
7308a62d963SHong Zhang       sum  = 0.0;
7318a62d963SHong Zhang       for (j=0; j<amat->mbs; j++) {
7328a62d963SHong Zhang         for (row=0; row<bs; row++) sums[row] = 0.0;
7338a62d963SHong Zhang         v  = amat->a + bs2*amat->i[j];
7348a62d963SHong Zhang         nz = amat->i[j+1]-amat->i[j];
7358a62d963SHong Zhang         for (i=0; i<nz; i++) {
7368a62d963SHong Zhang           for (col=0; col<bs; col++) {
7378a62d963SHong Zhang             for (row=0; row<bs; row++) {
7388a62d963SHong Zhang               sums[row] += PetscAbsScalar(*v); v++;
7398a62d963SHong Zhang             }
7408a62d963SHong Zhang           }
7418a62d963SHong Zhang         }
7428a62d963SHong Zhang         v  = bmat->a + bs2*bmat->i[j];
7438a62d963SHong Zhang         nz = bmat->i[j+1]-bmat->i[j];
7448a62d963SHong Zhang         for (i=0; i<nz; i++) {
7458a62d963SHong Zhang           for (col=0; col<bs; col++) {
7468a62d963SHong Zhang             for (row=0; row<bs; row++) {
7478a62d963SHong Zhang               sums[row] += PetscAbsScalar(*v); v++;
7488a62d963SHong Zhang             }
7498a62d963SHong Zhang           }
7508a62d963SHong Zhang         }
7518a62d963SHong Zhang         for (row=0; row<bs; row++) {
7528a62d963SHong Zhang           if (sums[row] > sum) sum = sums[row];
7538a62d963SHong Zhang         }
7548a62d963SHong Zhang       }
755b2566f29SBarry Smith       ierr = MPIU_Allreduce(&sum,nrm,1,MPIU_REAL,MPIU_MAX,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
756577dd1f9SKris Buschelman       ierr = PetscFree(sums);CHKERRQ(ierr);
757ce94432eSBarry Smith     } else SETERRQ(PetscObjectComm((PetscObject)mat),PETSC_ERR_SUP,"No support for this norm yet");
758d64ed03dSBarry Smith   }
7593a40ed3dSBarry Smith   PetscFunctionReturn(0);
760d6de1c52SSatish Balay }
76157b952d6SSatish Balay 
762fef45726SSatish Balay /*
763fef45726SSatish Balay   Creates the hash table, and sets the table
764fef45726SSatish Balay   This table is created only once.
765fef45726SSatish Balay   If new entried need to be added to the matrix
766fef45726SSatish Balay   then the hash table has to be destroyed and
767fef45726SSatish Balay   recreated.
768fef45726SSatish Balay */
769dfbe8321SBarry Smith PetscErrorCode MatCreateHashTable_MPIBAIJ_Private(Mat mat,PetscReal factor)
770596b8d2eSBarry Smith {
771596b8d2eSBarry Smith   Mat_MPIBAIJ    *baij = (Mat_MPIBAIJ*)mat->data;
772596b8d2eSBarry Smith   Mat            A     = baij->A,B=baij->B;
773596b8d2eSBarry Smith   Mat_SeqBAIJ    *a    = (Mat_SeqBAIJ*)A->data,*b=(Mat_SeqBAIJ*)B->data;
774b24ad042SBarry Smith   PetscInt       i,j,k,nz=a->nz+b->nz,h1,*ai=a->i,*aj=a->j,*bi=b->i,*bj=b->j;
7756849ba73SBarry Smith   PetscErrorCode ierr;
776fca92195SBarry Smith   PetscInt       ht_size,bs2=baij->bs2,rstart=baij->rstartbs;
777899cda47SBarry Smith   PetscInt       cstart=baij->cstartbs,*garray=baij->garray,row,col,Nbs=baij->Nbs;
778b24ad042SBarry Smith   PetscInt       *HT,key;
7793eda8832SBarry Smith   MatScalar      **HD;
780329f5518SBarry Smith   PetscReal      tmp;
7816cf91177SBarry Smith #if defined(PETSC_USE_INFO)
782b24ad042SBarry Smith   PetscInt ct=0,max=0;
7834a15367fSSatish Balay #endif
784fef45726SSatish Balay 
785d64ed03dSBarry Smith   PetscFunctionBegin;
786fca92195SBarry Smith   if (baij->ht) PetscFunctionReturn(0);
787fef45726SSatish Balay 
788fca92195SBarry Smith   baij->ht_size = (PetscInt)(factor*nz);
789fca92195SBarry Smith   ht_size       = baij->ht_size;
7900bdbc534SSatish Balay 
791fef45726SSatish Balay   /* Allocate Memory for Hash Table */
7921795a4d1SJed Brown   ierr = PetscCalloc2(ht_size,&baij->hd,ht_size,&baij->ht);CHKERRQ(ierr);
793b9e4cc15SSatish Balay   HD   = baij->hd;
794a07cd24cSSatish Balay   HT   = baij->ht;
795b9e4cc15SSatish Balay 
796596b8d2eSBarry Smith   /* Loop Over A */
7970bdbc534SSatish Balay   for (i=0; i<a->mbs; i++) {
798596b8d2eSBarry Smith     for (j=ai[i]; j<ai[i+1]; j++) {
7990bdbc534SSatish Balay       row = i+rstart;
8000bdbc534SSatish Balay       col = aj[j]+cstart;
801596b8d2eSBarry Smith 
802187ce0cbSSatish Balay       key = row*Nbs + col + 1;
803fca92195SBarry Smith       h1  = HASH(ht_size,key,tmp);
804fca92195SBarry Smith       for (k=0; k<ht_size; k++) {
805fca92195SBarry Smith         if (!HT[(h1+k)%ht_size]) {
806fca92195SBarry Smith           HT[(h1+k)%ht_size] = key;
807fca92195SBarry Smith           HD[(h1+k)%ht_size] = a->a + j*bs2;
808596b8d2eSBarry Smith           break;
8096cf91177SBarry Smith #if defined(PETSC_USE_INFO)
810187ce0cbSSatish Balay         } else {
811187ce0cbSSatish Balay           ct++;
812187ce0cbSSatish Balay #endif
813596b8d2eSBarry Smith         }
814187ce0cbSSatish Balay       }
8156cf91177SBarry Smith #if defined(PETSC_USE_INFO)
816187ce0cbSSatish Balay       if (k> max) max = k;
817187ce0cbSSatish Balay #endif
818596b8d2eSBarry Smith     }
819596b8d2eSBarry Smith   }
820596b8d2eSBarry Smith   /* Loop Over B */
8210bdbc534SSatish Balay   for (i=0; i<b->mbs; i++) {
822596b8d2eSBarry Smith     for (j=bi[i]; j<bi[i+1]; j++) {
8230bdbc534SSatish Balay       row = i+rstart;
8240bdbc534SSatish Balay       col = garray[bj[j]];
825187ce0cbSSatish Balay       key = row*Nbs + col + 1;
826fca92195SBarry Smith       h1  = HASH(ht_size,key,tmp);
827fca92195SBarry Smith       for (k=0; k<ht_size; k++) {
828fca92195SBarry Smith         if (!HT[(h1+k)%ht_size]) {
829fca92195SBarry Smith           HT[(h1+k)%ht_size] = key;
830fca92195SBarry Smith           HD[(h1+k)%ht_size] = b->a + j*bs2;
831596b8d2eSBarry Smith           break;
8326cf91177SBarry Smith #if defined(PETSC_USE_INFO)
833187ce0cbSSatish Balay         } else {
834187ce0cbSSatish Balay           ct++;
835187ce0cbSSatish Balay #endif
836596b8d2eSBarry Smith         }
837187ce0cbSSatish Balay       }
8386cf91177SBarry Smith #if defined(PETSC_USE_INFO)
839187ce0cbSSatish Balay       if (k> max) max = k;
840187ce0cbSSatish Balay #endif
841596b8d2eSBarry Smith     }
842596b8d2eSBarry Smith   }
843596b8d2eSBarry Smith 
844596b8d2eSBarry Smith   /* Print Summary */
8456cf91177SBarry Smith #if defined(PETSC_USE_INFO)
846fca92195SBarry Smith   for (i=0,j=0; i<ht_size; i++) {
84726fbe8dcSKarl Rupp     if (HT[i]) j++;
848c38d4ed2SBarry Smith   }
8491e2582c4SBarry Smith   ierr = PetscInfo2(mat,"Average Search = %5.2f,max search = %D\n",(!j)? 0.0:((PetscReal)(ct+j))/j,max);CHKERRQ(ierr);
850187ce0cbSSatish Balay #endif
8513a40ed3dSBarry Smith   PetscFunctionReturn(0);
852596b8d2eSBarry Smith }
85357b952d6SSatish Balay 
854dfbe8321SBarry Smith PetscErrorCode MatAssemblyBegin_MPIBAIJ(Mat mat,MatAssemblyType mode)
855bbb85fb3SSatish Balay {
856bbb85fb3SSatish Balay   Mat_MPIBAIJ    *baij = (Mat_MPIBAIJ*)mat->data;
857dfbe8321SBarry Smith   PetscErrorCode ierr;
858b24ad042SBarry Smith   PetscInt       nstash,reallocs;
859bbb85fb3SSatish Balay 
860bbb85fb3SSatish Balay   PetscFunctionBegin;
86126fbe8dcSKarl Rupp   if (baij->donotstash || mat->nooffprocentries) PetscFunctionReturn(0);
862bbb85fb3SSatish Balay 
863d0f46423SBarry Smith   ierr = MatStashScatterBegin_Private(mat,&mat->stash,mat->rmap->range);CHKERRQ(ierr);
8641e2582c4SBarry Smith   ierr = MatStashScatterBegin_Private(mat,&mat->bstash,baij->rangebs);CHKERRQ(ierr);
8658798bf22SSatish Balay   ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr);
8661e2582c4SBarry Smith   ierr = PetscInfo2(mat,"Stash has %D entries,uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr);
86746680499SSatish Balay   ierr = MatStashGetInfo_Private(&mat->bstash,&nstash,&reallocs);CHKERRQ(ierr);
8681e2582c4SBarry Smith   ierr = PetscInfo2(mat,"Block-Stash has %D entries, uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr);
869bbb85fb3SSatish Balay   PetscFunctionReturn(0);
870bbb85fb3SSatish Balay }
871bbb85fb3SSatish Balay 
872dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_MPIBAIJ(Mat mat,MatAssemblyType mode)
873bbb85fb3SSatish Balay {
874bbb85fb3SSatish Balay   Mat_MPIBAIJ    *baij=(Mat_MPIBAIJ*)mat->data;
87591c97fd4SSatish Balay   Mat_SeqBAIJ    *a   =(Mat_SeqBAIJ*)baij->A->data;
8766849ba73SBarry Smith   PetscErrorCode ierr;
877b24ad042SBarry Smith   PetscInt       i,j,rstart,ncols,flg,bs2=baij->bs2;
878e44c0bd4SBarry Smith   PetscInt       *row,*col;
879ace3abfcSBarry Smith   PetscBool      r1,r2,r3,other_disassembled;
8803eda8832SBarry Smith   MatScalar      *val;
881b24ad042SBarry Smith   PetscMPIInt    n;
882bbb85fb3SSatish Balay 
883bbb85fb3SSatish Balay   PetscFunctionBegin;
8845fd66863SKarl Rupp   /* do not use 'b=(Mat_SeqBAIJ*)baij->B->data' as B can be reset in disassembly */
8854cb17eb5SBarry Smith   if (!baij->donotstash && !mat->nooffprocentries) {
886a2d1c673SSatish Balay     while (1) {
8878798bf22SSatish Balay       ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr);
888a2d1c673SSatish Balay       if (!flg) break;
889a2d1c673SSatish Balay 
890bbb85fb3SSatish Balay       for (i=0; i<n;) {
891bbb85fb3SSatish Balay         /* Now identify the consecutive vals belonging to the same row */
89226fbe8dcSKarl Rupp         for (j=i,rstart=row[j]; j<n; j++) {
89326fbe8dcSKarl Rupp           if (row[j] != rstart) break;
89426fbe8dcSKarl Rupp         }
895bbb85fb3SSatish Balay         if (j < n) ncols = j-i;
896bbb85fb3SSatish Balay         else       ncols = n-i;
897bbb85fb3SSatish Balay         /* Now assemble all these values with a single function call */
8984b4eb8d3SJed Brown         ierr = MatSetValues_MPIBAIJ(mat,1,row+i,ncols,col+i,val+i,mat->insertmode);CHKERRQ(ierr);
899bbb85fb3SSatish Balay         i    = j;
900bbb85fb3SSatish Balay       }
901bbb85fb3SSatish Balay     }
9028798bf22SSatish Balay     ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr);
903a2d1c673SSatish Balay     /* Now process the block-stash. Since the values are stashed column-oriented,
904a2d1c673SSatish Balay        set the roworiented flag to column oriented, and after MatSetValues()
905a2d1c673SSatish Balay        restore the original flags */
906a2d1c673SSatish Balay     r1 = baij->roworiented;
907a2d1c673SSatish Balay     r2 = a->roworiented;
90891c97fd4SSatish Balay     r3 = ((Mat_SeqBAIJ*)baij->B->data)->roworiented;
90926fbe8dcSKarl Rupp 
9107c922b88SBarry Smith     baij->roworiented = PETSC_FALSE;
9117c922b88SBarry Smith     a->roworiented    = PETSC_FALSE;
91226fbe8dcSKarl Rupp 
91391c97fd4SSatish Balay     (((Mat_SeqBAIJ*)baij->B->data))->roworiented = PETSC_FALSE; /* b->roworiented */
914a2d1c673SSatish Balay     while (1) {
9158798bf22SSatish Balay       ierr = MatStashScatterGetMesg_Private(&mat->bstash,&n,&row,&col,&val,&flg);CHKERRQ(ierr);
916a2d1c673SSatish Balay       if (!flg) break;
917a2d1c673SSatish Balay 
918a2d1c673SSatish Balay       for (i=0; i<n;) {
919a2d1c673SSatish Balay         /* Now identify the consecutive vals belonging to the same row */
92026fbe8dcSKarl Rupp         for (j=i,rstart=row[j]; j<n; j++) {
92126fbe8dcSKarl Rupp           if (row[j] != rstart) break;
92226fbe8dcSKarl Rupp         }
923a2d1c673SSatish Balay         if (j < n) ncols = j-i;
924a2d1c673SSatish Balay         else       ncols = n-i;
9254b4eb8d3SJed Brown         ierr = MatSetValuesBlocked_MPIBAIJ(mat,1,row+i,ncols,col+i,val+i*bs2,mat->insertmode);CHKERRQ(ierr);
926a2d1c673SSatish Balay         i    = j;
927a2d1c673SSatish Balay       }
928a2d1c673SSatish Balay     }
9298798bf22SSatish Balay     ierr = MatStashScatterEnd_Private(&mat->bstash);CHKERRQ(ierr);
93026fbe8dcSKarl Rupp 
931a2d1c673SSatish Balay     baij->roworiented = r1;
932a2d1c673SSatish Balay     a->roworiented    = r2;
93326fbe8dcSKarl Rupp 
93491c97fd4SSatish Balay     ((Mat_SeqBAIJ*)baij->B->data)->roworiented = r3; /* b->roworiented */
935bbb85fb3SSatish Balay   }
936bbb85fb3SSatish Balay 
937bbb85fb3SSatish Balay   ierr = MatAssemblyBegin(baij->A,mode);CHKERRQ(ierr);
938bbb85fb3SSatish Balay   ierr = MatAssemblyEnd(baij->A,mode);CHKERRQ(ierr);
939bbb85fb3SSatish Balay 
940bbb85fb3SSatish Balay   /* determine if any processor has disassembled, if so we must
941bbb85fb3SSatish Balay      also disassemble ourselfs, in order that we may reassemble. */
942bbb85fb3SSatish Balay   /*
943bbb85fb3SSatish Balay      if nonzero structure of submatrix B cannot change then we know that
944bbb85fb3SSatish Balay      no processor disassembled thus we can skip this stuff
945bbb85fb3SSatish Balay   */
946bbb85fb3SSatish Balay   if (!((Mat_SeqBAIJ*)baij->B->data)->nonew) {
947b2566f29SBarry Smith     ierr = MPIU_Allreduce(&mat->was_assembled,&other_disassembled,1,MPIU_BOOL,MPI_PROD,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
948bbb85fb3SSatish Balay     if (mat->was_assembled && !other_disassembled) {
949ab9863d7SBarry Smith       ierr = MatDisAssemble_MPIBAIJ(mat);CHKERRQ(ierr);
950bbb85fb3SSatish Balay     }
951bbb85fb3SSatish Balay   }
952bbb85fb3SSatish Balay 
953bbb85fb3SSatish Balay   if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) {
954bbb85fb3SSatish Balay     ierr = MatSetUpMultiply_MPIBAIJ(mat);CHKERRQ(ierr);
955bbb85fb3SSatish Balay   }
956bbb85fb3SSatish Balay   ierr = MatAssemblyBegin(baij->B,mode);CHKERRQ(ierr);
957bbb85fb3SSatish Balay   ierr = MatAssemblyEnd(baij->B,mode);CHKERRQ(ierr);
958bbb85fb3SSatish Balay 
9596cf91177SBarry Smith #if defined(PETSC_USE_INFO)
960bbb85fb3SSatish Balay   if (baij->ht && mode== MAT_FINAL_ASSEMBLY) {
961abf3b562SBarry Smith     ierr = PetscInfo1(mat,"Average Hash Table Search in MatSetValues = %5.2f\n",(double)((PetscReal)baij->ht_total_ct)/baij->ht_insert_ct);CHKERRQ(ierr);
96226fbe8dcSKarl Rupp 
963bbb85fb3SSatish Balay     baij->ht_total_ct  = 0;
964bbb85fb3SSatish Balay     baij->ht_insert_ct = 0;
965bbb85fb3SSatish Balay   }
966bbb85fb3SSatish Balay #endif
967bbb85fb3SSatish Balay   if (baij->ht_flag && !baij->ht && mode == MAT_FINAL_ASSEMBLY) {
968bbb85fb3SSatish Balay     ierr = MatCreateHashTable_MPIBAIJ_Private(mat,baij->ht_fact);CHKERRQ(ierr);
96926fbe8dcSKarl Rupp 
970bbb85fb3SSatish Balay     mat->ops->setvalues        = MatSetValues_MPIBAIJ_HT;
971bbb85fb3SSatish Balay     mat->ops->setvaluesblocked = MatSetValuesBlocked_MPIBAIJ_HT;
972bbb85fb3SSatish Balay   }
973bbb85fb3SSatish Balay 
974fca92195SBarry Smith   ierr = PetscFree2(baij->rowvalues,baij->rowindices);CHKERRQ(ierr);
97526fbe8dcSKarl Rupp 
976606d414cSSatish Balay   baij->rowvalues = 0;
9774f9cfa9eSBarry Smith 
9784f9cfa9eSBarry Smith   /* if no new nonzero locations are allowed in matrix then only set the matrix state the first time through */
9794f9cfa9eSBarry Smith   if ((!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) || !((Mat_SeqBAIJ*)(baij->A->data))->nonew) {
980e56f5c9eSBarry Smith     PetscObjectState state = baij->A->nonzerostate + baij->B->nonzerostate;
981b2566f29SBarry Smith     ierr = MPIU_Allreduce(&state,&mat->nonzerostate,1,MPIU_INT64,MPI_SUM,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
982e56f5c9eSBarry Smith   }
983bbb85fb3SSatish Balay   PetscFunctionReturn(0);
984bbb85fb3SSatish Balay }
98557b952d6SSatish Balay 
9867da1fb6eSBarry Smith extern PetscErrorCode MatView_SeqBAIJ(Mat,PetscViewer);
9879804daf3SBarry Smith #include <petscdraw.h>
9886849ba73SBarry Smith static PetscErrorCode MatView_MPIBAIJ_ASCIIorDraworSocket(Mat mat,PetscViewer viewer)
98957b952d6SSatish Balay {
99057b952d6SSatish Balay   Mat_MPIBAIJ       *baij = (Mat_MPIBAIJ*)mat->data;
991dfbe8321SBarry Smith   PetscErrorCode    ierr;
9927da1fb6eSBarry Smith   PetscMPIInt       rank = baij->rank;
993d0f46423SBarry Smith   PetscInt          bs   = mat->rmap->bs;
994ace3abfcSBarry Smith   PetscBool         iascii,isdraw;
995b0a32e0cSBarry Smith   PetscViewer       sviewer;
996f3ef73ceSBarry Smith   PetscViewerFormat format;
99757b952d6SSatish Balay 
998d64ed03dSBarry Smith   PetscFunctionBegin;
999251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr);
1000251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr);
100132077d6dSBarry Smith   if (iascii) {
1002b0a32e0cSBarry Smith     ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr);
1003456192e2SBarry Smith     if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) {
10044e220ebcSLois Curfman McInnes       MatInfo info;
1005ce94432eSBarry Smith       ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)mat),&rank);CHKERRQ(ierr);
1006d41123aaSBarry Smith       ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr);
10071575c14dSBarry Smith       ierr = PetscViewerASCIIPushSynchronized(viewer);CHKERRQ(ierr);
1008b1e9c6f1SBarry Smith       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Local rows %D nz %D nz alloced %D bs %D mem %g\n",
1009b1e9c6f1SBarry Smith                                                 rank,mat->rmap->n,(PetscInt)info.nz_used,(PetscInt)info.nz_allocated,mat->rmap->bs,(double)info.memory);CHKERRQ(ierr);
1010d132466eSBarry Smith       ierr = MatGetInfo(baij->A,MAT_LOCAL,&info);CHKERRQ(ierr);
1011e6dd01d4SJed Brown       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] on-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used);CHKERRQ(ierr);
1012d132466eSBarry Smith       ierr = MatGetInfo(baij->B,MAT_LOCAL,&info);CHKERRQ(ierr);
1013e6dd01d4SJed Brown       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] off-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used);CHKERRQ(ierr);
1014b0a32e0cSBarry Smith       ierr = PetscViewerFlush(viewer);CHKERRQ(ierr);
10151575c14dSBarry Smith       ierr = PetscViewerASCIIPopSynchronized(viewer);CHKERRQ(ierr);
101607d81ca4SBarry Smith       ierr = PetscViewerASCIIPrintf(viewer,"Information on VecScatter used in matrix-vector product: \n");CHKERRQ(ierr);
101757b952d6SSatish Balay       ierr = VecScatterView(baij->Mvctx,viewer);CHKERRQ(ierr);
10183a40ed3dSBarry Smith       PetscFunctionReturn(0);
1019fb9695e5SSatish Balay     } else if (format == PETSC_VIEWER_ASCII_INFO) {
102077431f27SBarry Smith       ierr = PetscViewerASCIIPrintf(viewer,"  block size is %D\n",bs);CHKERRQ(ierr);
10213a40ed3dSBarry Smith       PetscFunctionReturn(0);
102204929863SHong Zhang     } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) {
102304929863SHong Zhang       PetscFunctionReturn(0);
102457b952d6SSatish Balay     }
102557b952d6SSatish Balay   }
102657b952d6SSatish Balay 
10270f5bd95cSBarry Smith   if (isdraw) {
1028b0a32e0cSBarry Smith     PetscDraw draw;
1029ace3abfcSBarry Smith     PetscBool isnull;
1030b0a32e0cSBarry Smith     ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr);
103145f3bb6eSLisandro Dalcin     ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr);
103245f3bb6eSLisandro Dalcin     if (isnull) PetscFunctionReturn(0);
103357b952d6SSatish Balay   }
103457b952d6SSatish Balay 
10357da1fb6eSBarry Smith   {
103657b952d6SSatish Balay     /* assemble the entire matrix onto first processor. */
103757b952d6SSatish Balay     Mat         A;
103857b952d6SSatish Balay     Mat_SeqBAIJ *Aloc;
1039d0f46423SBarry Smith     PetscInt    M = mat->rmap->N,N = mat->cmap->N,*ai,*aj,col,i,j,k,*rvals,mbs = baij->mbs;
10403eda8832SBarry Smith     MatScalar   *a;
10413e219373SBarry Smith     const char  *matname;
104257b952d6SSatish Balay 
1043f204ca49SKris Buschelman     /* Here we are creating a temporary matrix, so will assume MPIBAIJ is acceptable */
1044f204ca49SKris Buschelman     /* Perhaps this should be the type of mat? */
1045ce94432eSBarry Smith     ierr = MatCreate(PetscObjectComm((PetscObject)mat),&A);CHKERRQ(ierr);
104657b952d6SSatish Balay     if (!rank) {
1047f69a0ea3SMatthew Knepley       ierr = MatSetSizes(A,M,N,M,N);CHKERRQ(ierr);
1048d64ed03dSBarry Smith     } else {
1049f69a0ea3SMatthew Knepley       ierr = MatSetSizes(A,0,0,M,N);CHKERRQ(ierr);
105057b952d6SSatish Balay     }
1051f204ca49SKris Buschelman     ierr = MatSetType(A,MATMPIBAIJ);CHKERRQ(ierr);
10520298fd71SBarry Smith     ierr = MatMPIBAIJSetPreallocation(A,mat->rmap->bs,0,NULL,0,NULL);CHKERRQ(ierr);
10532b82e772SSatish Balay     ierr = MatSetOption(A,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_FALSE);CHKERRQ(ierr);
10543bb1ff40SBarry Smith     ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)A);CHKERRQ(ierr);
105557b952d6SSatish Balay 
105657b952d6SSatish Balay     /* copy over the A part */
105757b952d6SSatish Balay     Aloc = (Mat_SeqBAIJ*)baij->A->data;
105857b952d6SSatish Balay     ai   = Aloc->i; aj = Aloc->j; a = Aloc->a;
1059785e854fSJed Brown     ierr = PetscMalloc1(bs,&rvals);CHKERRQ(ierr);
106057b952d6SSatish Balay 
106157b952d6SSatish Balay     for (i=0; i<mbs; i++) {
1062899cda47SBarry Smith       rvals[0] = bs*(baij->rstartbs + i);
106326fbe8dcSKarl Rupp       for (j=1; j<bs; j++) rvals[j] = rvals[j-1] + 1;
106457b952d6SSatish Balay       for (j=ai[i]; j<ai[i+1]; j++) {
1065899cda47SBarry Smith         col = (baij->cstartbs+aj[j])*bs;
106657b952d6SSatish Balay         for (k=0; k<bs; k++) {
106797e5c40aSBarry Smith           ierr      = MatSetValues_MPIBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr);
1068cee3aa6bSSatish Balay           col++; a += bs;
106957b952d6SSatish Balay         }
107057b952d6SSatish Balay       }
107157b952d6SSatish Balay     }
107257b952d6SSatish Balay     /* copy over the B part */
107357b952d6SSatish Balay     Aloc = (Mat_SeqBAIJ*)baij->B->data;
107457b952d6SSatish Balay     ai   = Aloc->i; aj = Aloc->j; a = Aloc->a;
107557b952d6SSatish Balay     for (i=0; i<mbs; i++) {
1076899cda47SBarry Smith       rvals[0] = bs*(baij->rstartbs + i);
107726fbe8dcSKarl Rupp       for (j=1; j<bs; j++) rvals[j] = rvals[j-1] + 1;
107857b952d6SSatish Balay       for (j=ai[i]; j<ai[i+1]; j++) {
107957b952d6SSatish Balay         col = baij->garray[aj[j]]*bs;
108057b952d6SSatish Balay         for (k=0; k<bs; k++) {
108197e5c40aSBarry Smith           ierr      = MatSetValues_MPIBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr);
1082cee3aa6bSSatish Balay           col++; a += bs;
108357b952d6SSatish Balay         }
108457b952d6SSatish Balay       }
108557b952d6SSatish Balay     }
1086606d414cSSatish Balay     ierr = PetscFree(rvals);CHKERRQ(ierr);
10876d4a8577SBarry Smith     ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
10886d4a8577SBarry Smith     ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
108955843e3eSBarry Smith     /*
109055843e3eSBarry Smith        Everyone has to call to draw the matrix since the graphics waits are
1091b0a32e0cSBarry Smith        synchronized across all processors that share the PetscDraw object
109255843e3eSBarry Smith     */
10933f08860eSBarry Smith     ierr = PetscViewerGetSubViewer(viewer,PETSC_COMM_SELF,&sviewer);CHKERRQ(ierr);
1094ade3a672SBarry Smith     ierr = PetscObjectGetName((PetscObject)mat,&matname);CHKERRQ(ierr);
10953e219373SBarry Smith     if (!rank) {
1096ade3a672SBarry Smith       ierr = PetscObjectSetName((PetscObject)((Mat_MPIBAIJ*)(A->data))->A,matname);CHKERRQ(ierr);
10977da1fb6eSBarry Smith       ierr = MatView_SeqBAIJ(((Mat_MPIBAIJ*)(A->data))->A,sviewer);CHKERRQ(ierr);
109857b952d6SSatish Balay     }
10993f08860eSBarry Smith     ierr = PetscViewerRestoreSubViewer(viewer,PETSC_COMM_SELF,&sviewer);CHKERRQ(ierr);
11001575c14dSBarry Smith     ierr = PetscViewerFlush(viewer);CHKERRQ(ierr);
11016bf464f9SBarry Smith     ierr = MatDestroy(&A);CHKERRQ(ierr);
110257b952d6SSatish Balay   }
11033a40ed3dSBarry Smith   PetscFunctionReturn(0);
110457b952d6SSatish Balay }
110557b952d6SSatish Balay 
1106*618cc2edSLisandro Dalcin /* Used for both MPIBAIJ and MPISBAIJ matrices */
1107b51a4376SLisandro Dalcin PetscErrorCode MatView_MPIBAIJ_Binary(Mat mat,PetscViewer viewer)
1108660746e0SBarry Smith {
1109b51a4376SLisandro Dalcin   Mat_MPIBAIJ    *aij = (Mat_MPIBAIJ*)mat->data;
1110b51a4376SLisandro Dalcin   Mat_SeqBAIJ    *A   = (Mat_SeqBAIJ*)aij->A->data;
1111b51a4376SLisandro Dalcin   Mat_SeqBAIJ    *B   = (Mat_SeqBAIJ*)aij->B->data;
1112b51a4376SLisandro Dalcin   const PetscInt *garray = aij->garray;
1113b51a4376SLisandro Dalcin   PetscInt       header[4],M,N,m,rs,cs,bs,nz,cnt,i,j,ja,jb,k,l;
1114b51a4376SLisandro Dalcin   PetscInt       *rowlens,*colidxs;
1115b51a4376SLisandro Dalcin   PetscScalar    *matvals;
1116660746e0SBarry Smith   PetscErrorCode ierr;
1117660746e0SBarry Smith 
1118660746e0SBarry Smith   PetscFunctionBegin;
1119b51a4376SLisandro Dalcin   ierr = PetscViewerSetUp(viewer);CHKERRQ(ierr);
1120b51a4376SLisandro Dalcin 
1121b51a4376SLisandro Dalcin   M  = mat->rmap->N;
1122b51a4376SLisandro Dalcin   N  = mat->cmap->N;
1123b51a4376SLisandro Dalcin   m  = mat->rmap->n;
1124b51a4376SLisandro Dalcin   rs = mat->rmap->rstart;
1125b51a4376SLisandro Dalcin   cs = mat->cmap->rstart;
1126b51a4376SLisandro Dalcin   bs = mat->rmap->bs;
1127b51a4376SLisandro Dalcin   nz = bs*bs*(A->nz + B->nz);
1128b51a4376SLisandro Dalcin 
1129b51a4376SLisandro Dalcin   /* write matrix header */
1130660746e0SBarry Smith   header[0] = MAT_FILE_CLASSID;
1131b51a4376SLisandro Dalcin   header[1] = M; header[2] = N; header[3] = nz;
1132ce94432eSBarry Smith   ierr = MPI_Reduce(&nz,&header[3],1,MPIU_INT,MPI_SUM,0,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
1133b51a4376SLisandro Dalcin   ierr = PetscViewerBinaryWrite(viewer,header,4,PETSC_INT);CHKERRQ(ierr);
1134660746e0SBarry Smith 
1135b51a4376SLisandro Dalcin   /* fill in and store row lengths */
1136b51a4376SLisandro Dalcin   ierr = PetscMalloc1(m,&rowlens);CHKERRQ(ierr);
1137b51a4376SLisandro Dalcin   for (cnt=0, i=0; i<A->mbs; i++)
1138b51a4376SLisandro Dalcin     for (j=0; j<bs; j++)
1139b51a4376SLisandro Dalcin       rowlens[cnt++] = bs*(A->i[i+1] - A->i[i] + B->i[i+1] - B->i[i]);
1140b51a4376SLisandro Dalcin   ierr = PetscViewerBinaryWriteAll(viewer,rowlens,m,rs,M,PETSC_INT);CHKERRQ(ierr);
1141b51a4376SLisandro Dalcin   ierr = PetscFree(rowlens);CHKERRQ(ierr);
1142660746e0SBarry Smith 
1143b51a4376SLisandro Dalcin   /* fill in and store column indices */
1144b51a4376SLisandro Dalcin   ierr = PetscMalloc1(nz,&colidxs);CHKERRQ(ierr);
1145b51a4376SLisandro Dalcin   for (cnt=0, i=0; i<A->mbs; i++) {
1146b51a4376SLisandro Dalcin     for (k=0; k<bs; k++) {
1147b51a4376SLisandro Dalcin       for (jb=B->i[i]; jb<B->i[i+1]; jb++) {
1148b51a4376SLisandro Dalcin         if (garray[B->j[jb]] > cs/bs) break;
1149b51a4376SLisandro Dalcin         for (l=0; l<bs; l++)
1150b51a4376SLisandro Dalcin           colidxs[cnt++] = bs*garray[B->j[jb]] + l;
1151660746e0SBarry Smith       }
1152b51a4376SLisandro Dalcin       for (ja=A->i[i]; ja<A->i[i+1]; ja++)
1153b51a4376SLisandro Dalcin         for (l=0; l<bs; l++)
1154b51a4376SLisandro Dalcin           colidxs[cnt++] = bs*A->j[ja] + l + cs;
1155b51a4376SLisandro Dalcin       for (; jb<B->i[i+1]; jb++)
1156b51a4376SLisandro Dalcin         for (l=0; l<bs; l++)
1157b51a4376SLisandro Dalcin           colidxs[cnt++] = bs*garray[B->j[jb]] + l;
1158660746e0SBarry Smith     }
1159660746e0SBarry Smith   }
1160660746e0SBarry Smith   if (cnt != nz) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_LIB,"Internal PETSc error: cnt = %D nz = %D",cnt,nz);
1161b51a4376SLisandro Dalcin   ierr = PetscViewerBinaryWriteAll(viewer,colidxs,nz,PETSC_DECIDE,PETSC_DECIDE,PETSC_INT);CHKERRQ(ierr);
1162b51a4376SLisandro Dalcin   ierr = PetscFree(colidxs);CHKERRQ(ierr);
1163660746e0SBarry Smith 
1164b51a4376SLisandro Dalcin   /* fill in and store nonzero values */
1165b51a4376SLisandro Dalcin   ierr = PetscMalloc1(nz,&matvals);CHKERRQ(ierr);
1166b51a4376SLisandro Dalcin   for (cnt=0, i=0; i<A->mbs; i++) {
1167b51a4376SLisandro Dalcin     for (k=0; k<bs; k++) {
1168b51a4376SLisandro Dalcin       for (jb=B->i[i]; jb<B->i[i+1]; jb++) {
1169b51a4376SLisandro Dalcin         if (garray[B->j[jb]] > cs/bs) break;
1170b51a4376SLisandro Dalcin         for (l=0; l<bs; l++)
1171b51a4376SLisandro Dalcin           matvals[cnt++] = B->a[bs*(bs*jb + l) + k];
1172660746e0SBarry Smith       }
1173b51a4376SLisandro Dalcin       for (ja=A->i[i]; ja<A->i[i+1]; ja++)
1174b51a4376SLisandro Dalcin         for (l=0; l<bs; l++)
1175b51a4376SLisandro Dalcin           matvals[cnt++] = A->a[bs*(bs*ja + l) + k];
1176b51a4376SLisandro Dalcin       for (; jb<B->i[i+1]; jb++)
1177b51a4376SLisandro Dalcin         for (l=0; l<bs; l++)
1178b51a4376SLisandro Dalcin           matvals[cnt++] = B->a[bs*(bs*jb + l) + k];;
1179660746e0SBarry Smith     }
1180b51a4376SLisandro Dalcin   }
1181b51a4376SLisandro Dalcin   ierr = PetscViewerBinaryWriteAll(viewer,matvals,nz,PETSC_DECIDE,PETSC_DECIDE,PETSC_SCALAR);CHKERRQ(ierr);
1182b51a4376SLisandro Dalcin   ierr = PetscFree(matvals);CHKERRQ(ierr);
1183660746e0SBarry Smith 
1184b51a4376SLisandro Dalcin   /* write block size option to the viewer's .info file */
1185b51a4376SLisandro Dalcin   ierr = MatView_Binary_BlockSizes(mat,viewer);CHKERRQ(ierr);
1186660746e0SBarry Smith   PetscFunctionReturn(0);
1187660746e0SBarry Smith }
1188660746e0SBarry Smith 
1189dfbe8321SBarry Smith PetscErrorCode MatView_MPIBAIJ(Mat mat,PetscViewer viewer)
119057b952d6SSatish Balay {
1191dfbe8321SBarry Smith   PetscErrorCode ierr;
1192ace3abfcSBarry Smith   PetscBool      iascii,isdraw,issocket,isbinary;
119357b952d6SSatish Balay 
1194d64ed03dSBarry Smith   PetscFunctionBegin;
1195251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr);
1196251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr);
1197251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERSOCKET,&issocket);CHKERRQ(ierr);
1198251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary);CHKERRQ(ierr);
1199660746e0SBarry Smith   if (iascii || isdraw || issocket) {
12007b2a1423SBarry Smith     ierr = MatView_MPIBAIJ_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr);
1201660746e0SBarry Smith   } else if (isbinary) {
1202660746e0SBarry Smith     ierr = MatView_MPIBAIJ_Binary(mat,viewer);CHKERRQ(ierr);
120357b952d6SSatish Balay   }
12043a40ed3dSBarry Smith   PetscFunctionReturn(0);
120557b952d6SSatish Balay }
120657b952d6SSatish Balay 
1207dfbe8321SBarry Smith PetscErrorCode MatDestroy_MPIBAIJ(Mat mat)
120879bdfe76SSatish Balay {
120979bdfe76SSatish Balay   Mat_MPIBAIJ    *baij = (Mat_MPIBAIJ*)mat->data;
1210dfbe8321SBarry Smith   PetscErrorCode ierr;
121179bdfe76SSatish Balay 
1212d64ed03dSBarry Smith   PetscFunctionBegin;
1213aa482453SBarry Smith #if defined(PETSC_USE_LOG)
1214d0f46423SBarry Smith   PetscLogObjectState((PetscObject)mat,"Rows=%D,Cols=%D",mat->rmap->N,mat->cmap->N);
121579bdfe76SSatish Balay #endif
12168798bf22SSatish Balay   ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr);
12178798bf22SSatish Balay   ierr = MatStashDestroy_Private(&mat->bstash);CHKERRQ(ierr);
12186bf464f9SBarry Smith   ierr = MatDestroy(&baij->A);CHKERRQ(ierr);
12196bf464f9SBarry Smith   ierr = MatDestroy(&baij->B);CHKERRQ(ierr);
1220aa482453SBarry Smith #if defined(PETSC_USE_CTABLE)
12216bc0bbbfSBarry Smith   ierr = PetscTableDestroy(&baij->colmap);CHKERRQ(ierr);
122248e59246SSatish Balay #else
122305b42c5fSBarry Smith   ierr = PetscFree(baij->colmap);CHKERRQ(ierr);
122448e59246SSatish Balay #endif
122505b42c5fSBarry Smith   ierr = PetscFree(baij->garray);CHKERRQ(ierr);
12266bf464f9SBarry Smith   ierr = VecDestroy(&baij->lvec);CHKERRQ(ierr);
12276bf464f9SBarry Smith   ierr = VecScatterDestroy(&baij->Mvctx);CHKERRQ(ierr);
1228fca92195SBarry Smith   ierr = PetscFree2(baij->rowvalues,baij->rowindices);CHKERRQ(ierr);
122905b42c5fSBarry Smith   ierr = PetscFree(baij->barray);CHKERRQ(ierr);
1230fca92195SBarry Smith   ierr = PetscFree2(baij->hd,baij->ht);CHKERRQ(ierr);
1231899cda47SBarry Smith   ierr = PetscFree(baij->rangebs);CHKERRQ(ierr);
1232bf0cc555SLisandro Dalcin   ierr = PetscFree(mat->data);CHKERRQ(ierr);
1233901853e0SKris Buschelman 
1234dbd8c25aSHong Zhang   ierr = PetscObjectChangeTypeName((PetscObject)mat,0);CHKERRQ(ierr);
1235bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatStoreValues_C",NULL);CHKERRQ(ierr);
1236bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatRetrieveValues_C",NULL);CHKERRQ(ierr);
1237bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPIBAIJSetPreallocation_C",NULL);CHKERRQ(ierr);
1238bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPIBAIJSetPreallocationCSR_C",NULL);CHKERRQ(ierr);
1239bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDiagonalScaleLocal_C",NULL);CHKERRQ(ierr);
1240bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatSetHashTableFactor_C",NULL);CHKERRQ(ierr);
1241bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpibaij_mpisbaij_C",NULL);CHKERRQ(ierr);
1242bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpibaij_mpibstrm_C",NULL);CHKERRQ(ierr);
12437ea3e4caSstefano_zampini #if defined(PETSC_HAVE_HYPRE)
12447ea3e4caSstefano_zampini   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpibaij_hypre_C",NULL);CHKERRQ(ierr);
12457ea3e4caSstefano_zampini #endif
1246c9225affSStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpibaij_is_C",NULL);CHKERRQ(ierr);
124775d48cdbSStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatPtAP_is_mpibaij_C",NULL);CHKERRQ(ierr);
12483a40ed3dSBarry Smith   PetscFunctionReturn(0);
124979bdfe76SSatish Balay }
125079bdfe76SSatish Balay 
1251dfbe8321SBarry Smith PetscErrorCode MatMult_MPIBAIJ(Mat A,Vec xx,Vec yy)
1252cee3aa6bSSatish Balay {
1253cee3aa6bSSatish Balay   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)A->data;
1254dfbe8321SBarry Smith   PetscErrorCode ierr;
1255b24ad042SBarry Smith   PetscInt       nt;
1256cee3aa6bSSatish Balay 
1257d64ed03dSBarry Smith   PetscFunctionBegin;
1258e1311b90SBarry Smith   ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr);
1259e7e72b3dSBarry Smith   if (nt != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx");
1260e1311b90SBarry Smith   ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr);
1261e7e72b3dSBarry Smith   if (nt != A->rmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible parition of A and yy");
1262ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1263f830108cSBarry Smith   ierr = (*a->A->ops->mult)(a->A,xx,yy);CHKERRQ(ierr);
1264ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1265f830108cSBarry Smith   ierr = (*a->B->ops->multadd)(a->B,a->lvec,yy,yy);CHKERRQ(ierr);
12663a40ed3dSBarry Smith   PetscFunctionReturn(0);
1267cee3aa6bSSatish Balay }
1268cee3aa6bSSatish Balay 
1269dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPIBAIJ(Mat A,Vec xx,Vec yy,Vec zz)
1270cee3aa6bSSatish Balay {
1271cee3aa6bSSatish Balay   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)A->data;
1272dfbe8321SBarry Smith   PetscErrorCode ierr;
1273d64ed03dSBarry Smith 
1274d64ed03dSBarry Smith   PetscFunctionBegin;
1275ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1276f830108cSBarry Smith   ierr = (*a->A->ops->multadd)(a->A,xx,yy,zz);CHKERRQ(ierr);
1277ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1278f830108cSBarry Smith   ierr = (*a->B->ops->multadd)(a->B,a->lvec,zz,zz);CHKERRQ(ierr);
12793a40ed3dSBarry Smith   PetscFunctionReturn(0);
1280cee3aa6bSSatish Balay }
1281cee3aa6bSSatish Balay 
1282dfbe8321SBarry Smith PetscErrorCode MatMultTranspose_MPIBAIJ(Mat A,Vec xx,Vec yy)
1283cee3aa6bSSatish Balay {
1284cee3aa6bSSatish Balay   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)A->data;
1285dfbe8321SBarry Smith   PetscErrorCode ierr;
1286cee3aa6bSSatish Balay 
1287d64ed03dSBarry Smith   PetscFunctionBegin;
1288cee3aa6bSSatish Balay   /* do nondiagonal part */
12897c922b88SBarry Smith   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr);
1290cee3aa6bSSatish Balay   /* do local part */
12917c922b88SBarry Smith   ierr = (*a->A->ops->multtranspose)(a->A,xx,yy);CHKERRQ(ierr);
1292e4a140f6SJunchao Zhang   /* add partial results together */
1293ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
1294ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
12953a40ed3dSBarry Smith   PetscFunctionReturn(0);
1296cee3aa6bSSatish Balay }
1297cee3aa6bSSatish Balay 
1298dfbe8321SBarry Smith PetscErrorCode MatMultTransposeAdd_MPIBAIJ(Mat A,Vec xx,Vec yy,Vec zz)
1299cee3aa6bSSatish Balay {
1300cee3aa6bSSatish Balay   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)A->data;
1301dfbe8321SBarry Smith   PetscErrorCode ierr;
1302cee3aa6bSSatish Balay 
1303d64ed03dSBarry Smith   PetscFunctionBegin;
1304cee3aa6bSSatish Balay   /* do nondiagonal part */
13057c922b88SBarry Smith   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr);
1306cee3aa6bSSatish Balay   /* do local part */
13077c922b88SBarry Smith   ierr = (*a->A->ops->multtransposeadd)(a->A,xx,yy,zz);CHKERRQ(ierr);
1308e4a140f6SJunchao Zhang   /* add partial results together */
1309e4a140f6SJunchao Zhang   ierr = VecScatterBegin(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
1310ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
13113a40ed3dSBarry Smith   PetscFunctionReturn(0);
1312cee3aa6bSSatish Balay }
1313cee3aa6bSSatish Balay 
1314cee3aa6bSSatish Balay /*
1315cee3aa6bSSatish Balay   This only works correctly for square matrices where the subblock A->A is the
1316cee3aa6bSSatish Balay    diagonal block
1317cee3aa6bSSatish Balay */
1318dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_MPIBAIJ(Mat A,Vec v)
1319cee3aa6bSSatish Balay {
1320cee3aa6bSSatish Balay   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)A->data;
1321dfbe8321SBarry Smith   PetscErrorCode ierr;
1322d64ed03dSBarry Smith 
1323d64ed03dSBarry Smith   PetscFunctionBegin;
1324e32f2f54SBarry Smith   if (A->rmap->N != A->cmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block");
13253a40ed3dSBarry Smith   ierr = MatGetDiagonal(a->A,v);CHKERRQ(ierr);
13263a40ed3dSBarry Smith   PetscFunctionReturn(0);
1327cee3aa6bSSatish Balay }
1328cee3aa6bSSatish Balay 
1329f4df32b1SMatthew Knepley PetscErrorCode MatScale_MPIBAIJ(Mat A,PetscScalar aa)
1330cee3aa6bSSatish Balay {
1331cee3aa6bSSatish Balay   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)A->data;
1332dfbe8321SBarry Smith   PetscErrorCode ierr;
1333d64ed03dSBarry Smith 
1334d64ed03dSBarry Smith   PetscFunctionBegin;
1335f4df32b1SMatthew Knepley   ierr = MatScale(a->A,aa);CHKERRQ(ierr);
1336f4df32b1SMatthew Knepley   ierr = MatScale(a->B,aa);CHKERRQ(ierr);
13373a40ed3dSBarry Smith   PetscFunctionReturn(0);
1338cee3aa6bSSatish Balay }
1339026e39d0SSatish Balay 
1340b24ad042SBarry Smith PetscErrorCode MatGetRow_MPIBAIJ(Mat matin,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v)
1341acdf5bf4SSatish Balay {
1342acdf5bf4SSatish Balay   Mat_MPIBAIJ    *mat = (Mat_MPIBAIJ*)matin->data;
134387828ca2SBarry Smith   PetscScalar    *vworkA,*vworkB,**pvA,**pvB,*v_p;
13446849ba73SBarry Smith   PetscErrorCode ierr;
1345d0f46423SBarry Smith   PetscInt       bs = matin->rmap->bs,bs2 = mat->bs2,i,*cworkA,*cworkB,**pcA,**pcB;
1346d0f46423SBarry Smith   PetscInt       nztot,nzA,nzB,lrow,brstart = matin->rmap->rstart,brend = matin->rmap->rend;
1347899cda47SBarry Smith   PetscInt       *cmap,*idx_p,cstart = mat->cstartbs;
1348acdf5bf4SSatish Balay 
1349d64ed03dSBarry Smith   PetscFunctionBegin;
1350e7e72b3dSBarry Smith   if (row < brstart || row >= brend) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local rows");
1351e32f2f54SBarry Smith   if (mat->getrowactive) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Already active");
1352acdf5bf4SSatish Balay   mat->getrowactive = PETSC_TRUE;
1353acdf5bf4SSatish Balay 
1354acdf5bf4SSatish Balay   if (!mat->rowvalues && (idx || v)) {
1355acdf5bf4SSatish Balay     /*
1356acdf5bf4SSatish Balay         allocate enough space to hold information from the longest row.
1357acdf5bf4SSatish Balay     */
1358acdf5bf4SSatish Balay     Mat_SeqBAIJ *Aa = (Mat_SeqBAIJ*)mat->A->data,*Ba = (Mat_SeqBAIJ*)mat->B->data;
1359b24ad042SBarry Smith     PetscInt    max = 1,mbs = mat->mbs,tmp;
1360bd16c2feSSatish Balay     for (i=0; i<mbs; i++) {
1361acdf5bf4SSatish Balay       tmp = Aa->i[i+1] - Aa->i[i] + Ba->i[i+1] - Ba->i[i];
136226fbe8dcSKarl Rupp       if (max < tmp) max = tmp;
1363acdf5bf4SSatish Balay     }
1364dcca6d9dSJed Brown     ierr = PetscMalloc2(max*bs2,&mat->rowvalues,max*bs2,&mat->rowindices);CHKERRQ(ierr);
1365acdf5bf4SSatish Balay   }
1366d9d09a02SSatish Balay   lrow = row - brstart;
1367acdf5bf4SSatish Balay 
1368acdf5bf4SSatish Balay   pvA = &vworkA; pcA = &cworkA; pvB = &vworkB; pcB = &cworkB;
1369acdf5bf4SSatish Balay   if (!v)   {pvA = 0; pvB = 0;}
1370acdf5bf4SSatish Balay   if (!idx) {pcA = 0; if (!v) pcB = 0;}
1371f830108cSBarry Smith   ierr  = (*mat->A->ops->getrow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr);
1372f830108cSBarry Smith   ierr  = (*mat->B->ops->getrow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr);
1373acdf5bf4SSatish Balay   nztot = nzA + nzB;
1374acdf5bf4SSatish Balay 
1375acdf5bf4SSatish Balay   cmap = mat->garray;
1376acdf5bf4SSatish Balay   if (v  || idx) {
1377acdf5bf4SSatish Balay     if (nztot) {
1378acdf5bf4SSatish Balay       /* Sort by increasing column numbers, assuming A and B already sorted */
1379b24ad042SBarry Smith       PetscInt imark = -1;
1380acdf5bf4SSatish Balay       if (v) {
1381acdf5bf4SSatish Balay         *v = v_p = mat->rowvalues;
1382acdf5bf4SSatish Balay         for (i=0; i<nzB; i++) {
1383d9d09a02SSatish Balay           if (cmap[cworkB[i]/bs] < cstart) v_p[i] = vworkB[i];
1384acdf5bf4SSatish Balay           else break;
1385acdf5bf4SSatish Balay         }
1386acdf5bf4SSatish Balay         imark = i;
1387acdf5bf4SSatish Balay         for (i=0; i<nzA; i++)     v_p[imark+i] = vworkA[i];
1388acdf5bf4SSatish Balay         for (i=imark; i<nzB; i++) v_p[nzA+i]   = vworkB[i];
1389acdf5bf4SSatish Balay       }
1390acdf5bf4SSatish Balay       if (idx) {
1391acdf5bf4SSatish Balay         *idx = idx_p = mat->rowindices;
1392acdf5bf4SSatish Balay         if (imark > -1) {
1393acdf5bf4SSatish Balay           for (i=0; i<imark; i++) {
1394bd16c2feSSatish Balay             idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs;
1395acdf5bf4SSatish Balay           }
1396acdf5bf4SSatish Balay         } else {
1397acdf5bf4SSatish Balay           for (i=0; i<nzB; i++) {
139826fbe8dcSKarl Rupp             if (cmap[cworkB[i]/bs] < cstart) idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs;
1399acdf5bf4SSatish Balay             else break;
1400acdf5bf4SSatish Balay           }
1401acdf5bf4SSatish Balay           imark = i;
1402acdf5bf4SSatish Balay         }
1403d9d09a02SSatish Balay         for (i=0; i<nzA; i++)     idx_p[imark+i] = cstart*bs + cworkA[i];
1404d9d09a02SSatish Balay         for (i=imark; i<nzB; i++) idx_p[nzA+i]   = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ;
1405acdf5bf4SSatish Balay       }
1406d64ed03dSBarry Smith     } else {
1407d212a18eSSatish Balay       if (idx) *idx = 0;
1408d212a18eSSatish Balay       if (v)   *v   = 0;
1409d212a18eSSatish Balay     }
1410acdf5bf4SSatish Balay   }
1411acdf5bf4SSatish Balay   *nz  = nztot;
1412f830108cSBarry Smith   ierr = (*mat->A->ops->restorerow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr);
1413f830108cSBarry Smith   ierr = (*mat->B->ops->restorerow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr);
14143a40ed3dSBarry Smith   PetscFunctionReturn(0);
1415acdf5bf4SSatish Balay }
1416acdf5bf4SSatish Balay 
1417b24ad042SBarry Smith PetscErrorCode MatRestoreRow_MPIBAIJ(Mat mat,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v)
1418acdf5bf4SSatish Balay {
1419acdf5bf4SSatish Balay   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data;
1420d64ed03dSBarry Smith 
1421d64ed03dSBarry Smith   PetscFunctionBegin;
1422e7e72b3dSBarry Smith   if (!baij->getrowactive) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"MatGetRow not called");
1423acdf5bf4SSatish Balay   baij->getrowactive = PETSC_FALSE;
14243a40ed3dSBarry Smith   PetscFunctionReturn(0);
1425acdf5bf4SSatish Balay }
1426acdf5bf4SSatish Balay 
1427dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_MPIBAIJ(Mat A)
142858667388SSatish Balay {
142958667388SSatish Balay   Mat_MPIBAIJ    *l = (Mat_MPIBAIJ*)A->data;
1430dfbe8321SBarry Smith   PetscErrorCode ierr;
1431d64ed03dSBarry Smith 
1432d64ed03dSBarry Smith   PetscFunctionBegin;
143358667388SSatish Balay   ierr = MatZeroEntries(l->A);CHKERRQ(ierr);
143458667388SSatish Balay   ierr = MatZeroEntries(l->B);CHKERRQ(ierr);
14353a40ed3dSBarry Smith   PetscFunctionReturn(0);
143658667388SSatish Balay }
14370ac07820SSatish Balay 
1438dfbe8321SBarry Smith PetscErrorCode MatGetInfo_MPIBAIJ(Mat matin,MatInfoType flag,MatInfo *info)
14390ac07820SSatish Balay {
14404e220ebcSLois Curfman McInnes   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)matin->data;
14414e220ebcSLois Curfman McInnes   Mat            A  = a->A,B = a->B;
1442dfbe8321SBarry Smith   PetscErrorCode ierr;
14433966268fSBarry Smith   PetscLogDouble isend[5],irecv[5];
14440ac07820SSatish Balay 
1445d64ed03dSBarry Smith   PetscFunctionBegin;
1446d0f46423SBarry Smith   info->block_size = (PetscReal)matin->rmap->bs;
144726fbe8dcSKarl Rupp 
14484e220ebcSLois Curfman McInnes   ierr = MatGetInfo(A,MAT_LOCAL,info);CHKERRQ(ierr);
144926fbe8dcSKarl Rupp 
14500e4b21beSBarry Smith   isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded;
1451de87f314SBarry Smith   isend[3] = info->memory;  isend[4] = info->mallocs;
145226fbe8dcSKarl Rupp 
14534e220ebcSLois Curfman McInnes   ierr = MatGetInfo(B,MAT_LOCAL,info);CHKERRQ(ierr);
145426fbe8dcSKarl Rupp 
14550e4b21beSBarry Smith   isend[0] += info->nz_used; isend[1] += info->nz_allocated; isend[2] += info->nz_unneeded;
1456de87f314SBarry Smith   isend[3] += info->memory;  isend[4] += info->mallocs;
145726fbe8dcSKarl Rupp 
14580ac07820SSatish Balay   if (flag == MAT_LOCAL) {
14594e220ebcSLois Curfman McInnes     info->nz_used      = isend[0];
14604e220ebcSLois Curfman McInnes     info->nz_allocated = isend[1];
14614e220ebcSLois Curfman McInnes     info->nz_unneeded  = isend[2];
14624e220ebcSLois Curfman McInnes     info->memory       = isend[3];
14634e220ebcSLois Curfman McInnes     info->mallocs      = isend[4];
14640ac07820SSatish Balay   } else if (flag == MAT_GLOBAL_MAX) {
14653966268fSBarry Smith     ierr = MPIU_Allreduce(isend,irecv,5,MPIU_PETSCLOGDOUBLE,MPI_MAX,PetscObjectComm((PetscObject)matin));CHKERRQ(ierr);
146626fbe8dcSKarl Rupp 
14674e220ebcSLois Curfman McInnes     info->nz_used      = irecv[0];
14684e220ebcSLois Curfman McInnes     info->nz_allocated = irecv[1];
14694e220ebcSLois Curfman McInnes     info->nz_unneeded  = irecv[2];
14704e220ebcSLois Curfman McInnes     info->memory       = irecv[3];
14714e220ebcSLois Curfman McInnes     info->mallocs      = irecv[4];
14720ac07820SSatish Balay   } else if (flag == MAT_GLOBAL_SUM) {
14733966268fSBarry Smith     ierr = MPIU_Allreduce(isend,irecv,5,MPIU_PETSCLOGDOUBLE,MPI_SUM,PetscObjectComm((PetscObject)matin));CHKERRQ(ierr);
147426fbe8dcSKarl Rupp 
14754e220ebcSLois Curfman McInnes     info->nz_used      = irecv[0];
14764e220ebcSLois Curfman McInnes     info->nz_allocated = irecv[1];
14774e220ebcSLois Curfman McInnes     info->nz_unneeded  = irecv[2];
14784e220ebcSLois Curfman McInnes     info->memory       = irecv[3];
14794e220ebcSLois Curfman McInnes     info->mallocs      = irecv[4];
1480ce94432eSBarry Smith   } else SETERRQ1(PetscObjectComm((PetscObject)matin),PETSC_ERR_ARG_WRONG,"Unknown MatInfoType argument %d",(int)flag);
14814e220ebcSLois Curfman McInnes   info->fill_ratio_given  = 0; /* no parallel LU/ILU/Cholesky */
14824e220ebcSLois Curfman McInnes   info->fill_ratio_needed = 0;
14834e220ebcSLois Curfman McInnes   info->factor_mallocs    = 0;
14843a40ed3dSBarry Smith   PetscFunctionReturn(0);
14850ac07820SSatish Balay }
14860ac07820SSatish Balay 
1487ace3abfcSBarry Smith PetscErrorCode MatSetOption_MPIBAIJ(Mat A,MatOption op,PetscBool flg)
148858667388SSatish Balay {
148958667388SSatish Balay   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)A->data;
1490dfbe8321SBarry Smith   PetscErrorCode ierr;
149158667388SSatish Balay 
1492d64ed03dSBarry Smith   PetscFunctionBegin;
149312c028f9SKris Buschelman   switch (op) {
1494512a5fc5SBarry Smith   case MAT_NEW_NONZERO_LOCATIONS:
149512c028f9SKris Buschelman   case MAT_NEW_NONZERO_ALLOCATION_ERR:
149628b2fa4aSMatthew Knepley   case MAT_UNUSED_NONZERO_LOCATION_ERR:
1497a9817697SBarry Smith   case MAT_KEEP_NONZERO_PATTERN:
149812c028f9SKris Buschelman   case MAT_NEW_NONZERO_LOCATION_ERR:
149943674050SBarry Smith     MatCheckPreallocated(A,1);
15004e0d8c25SBarry Smith     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
15014e0d8c25SBarry Smith     ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr);
150212c028f9SKris Buschelman     break;
150312c028f9SKris Buschelman   case MAT_ROW_ORIENTED:
150443674050SBarry Smith     MatCheckPreallocated(A,1);
15054e0d8c25SBarry Smith     a->roworiented = flg;
150626fbe8dcSKarl Rupp 
15074e0d8c25SBarry Smith     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
15084e0d8c25SBarry Smith     ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr);
150912c028f9SKris Buschelman     break;
15104e0d8c25SBarry Smith   case MAT_NEW_DIAGONALS:
1511071fcb05SBarry Smith   case MAT_SORTED_FULL:
1512290bbb0aSBarry Smith     ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr);
151312c028f9SKris Buschelman     break;
151412c028f9SKris Buschelman   case MAT_IGNORE_OFF_PROC_ENTRIES:
15154e0d8c25SBarry Smith     a->donotstash = flg;
151612c028f9SKris Buschelman     break;
151712c028f9SKris Buschelman   case MAT_USE_HASH_TABLE:
15184e0d8c25SBarry Smith     a->ht_flag = flg;
1519abf3b562SBarry Smith     a->ht_fact = 1.39;
152012c028f9SKris Buschelman     break;
152177e54ba9SKris Buschelman   case MAT_SYMMETRIC:
152277e54ba9SKris Buschelman   case MAT_STRUCTURALLY_SYMMETRIC:
15232188ac68SBarry Smith   case MAT_HERMITIAN:
1524c10200c1SHong Zhang   case MAT_SUBMAT_SINGLEIS:
15252188ac68SBarry Smith   case MAT_SYMMETRY_ETERNAL:
152643674050SBarry Smith     MatCheckPreallocated(A,1);
15274e0d8c25SBarry Smith     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
152877e54ba9SKris Buschelman     break;
152912c028f9SKris Buschelman   default:
1530ce94432eSBarry Smith     SETERRQ1(PetscObjectComm((PetscObject)A),PETSC_ERR_SUP,"unknown option %d",op);
1531d64ed03dSBarry Smith   }
15323a40ed3dSBarry Smith   PetscFunctionReturn(0);
153358667388SSatish Balay }
153458667388SSatish Balay 
1535fc4dec0aSBarry Smith PetscErrorCode MatTranspose_MPIBAIJ(Mat A,MatReuse reuse,Mat *matout)
15360ac07820SSatish Balay {
15370ac07820SSatish Balay   Mat_MPIBAIJ    *baij = (Mat_MPIBAIJ*)A->data;
15380ac07820SSatish Balay   Mat_SeqBAIJ    *Aloc;
15390ac07820SSatish Balay   Mat            B;
1540dfbe8321SBarry Smith   PetscErrorCode ierr;
1541d0f46423SBarry Smith   PetscInt       M =A->rmap->N,N=A->cmap->N,*ai,*aj,i,*rvals,j,k,col;
1542d0f46423SBarry Smith   PetscInt       bs=A->rmap->bs,mbs=baij->mbs;
15433eda8832SBarry Smith   MatScalar      *a;
15440ac07820SSatish Balay 
1545d64ed03dSBarry Smith   PetscFunctionBegin;
1546cf37664fSBarry Smith   if (reuse == MAT_INITIAL_MATRIX || reuse == MAT_INPLACE_MATRIX) {
1547ce94432eSBarry Smith     ierr = MatCreate(PetscObjectComm((PetscObject)A),&B);CHKERRQ(ierr);
1548d0f46423SBarry Smith     ierr = MatSetSizes(B,A->cmap->n,A->rmap->n,N,M);CHKERRQ(ierr);
15497adad957SLisandro Dalcin     ierr = MatSetType(B,((PetscObject)A)->type_name);CHKERRQ(ierr);
15502e72b8d9SBarry Smith     /* Do not know preallocation information, but must set block size */
15510298fd71SBarry Smith     ierr = MatMPIBAIJSetPreallocation(B,A->rmap->bs,PETSC_DECIDE,NULL,PETSC_DECIDE,NULL);CHKERRQ(ierr);
1552fc4dec0aSBarry Smith   } else {
1553fc4dec0aSBarry Smith     B = *matout;
1554fc4dec0aSBarry Smith   }
15550ac07820SSatish Balay 
15560ac07820SSatish Balay   /* copy over the A part */
15570ac07820SSatish Balay   Aloc = (Mat_SeqBAIJ*)baij->A->data;
15580ac07820SSatish Balay   ai   = Aloc->i; aj = Aloc->j; a = Aloc->a;
1559785e854fSJed Brown   ierr = PetscMalloc1(bs,&rvals);CHKERRQ(ierr);
15600ac07820SSatish Balay 
15610ac07820SSatish Balay   for (i=0; i<mbs; i++) {
1562899cda47SBarry Smith     rvals[0] = bs*(baij->rstartbs + i);
156326fbe8dcSKarl Rupp     for (j=1; j<bs; j++) rvals[j] = rvals[j-1] + 1;
15640ac07820SSatish Balay     for (j=ai[i]; j<ai[i+1]; j++) {
1565899cda47SBarry Smith       col = (baij->cstartbs+aj[j])*bs;
15660ac07820SSatish Balay       for (k=0; k<bs; k++) {
156797e5c40aSBarry Smith         ierr = MatSetValues_MPIBAIJ(B,1,&col,bs,rvals,a,INSERT_VALUES);CHKERRQ(ierr);
156826fbe8dcSKarl Rupp 
15690ac07820SSatish Balay         col++; a += bs;
15700ac07820SSatish Balay       }
15710ac07820SSatish Balay     }
15720ac07820SSatish Balay   }
15730ac07820SSatish Balay   /* copy over the B part */
15740ac07820SSatish Balay   Aloc = (Mat_SeqBAIJ*)baij->B->data;
15750ac07820SSatish Balay   ai   = Aloc->i; aj = Aloc->j; a = Aloc->a;
15760ac07820SSatish Balay   for (i=0; i<mbs; i++) {
1577899cda47SBarry Smith     rvals[0] = bs*(baij->rstartbs + i);
157826fbe8dcSKarl Rupp     for (j=1; j<bs; j++) rvals[j] = rvals[j-1] + 1;
15790ac07820SSatish Balay     for (j=ai[i]; j<ai[i+1]; j++) {
15800ac07820SSatish Balay       col = baij->garray[aj[j]]*bs;
15810ac07820SSatish Balay       for (k=0; k<bs; k++) {
158297e5c40aSBarry Smith         ierr = MatSetValues_MPIBAIJ(B,1,&col,bs,rvals,a,INSERT_VALUES);CHKERRQ(ierr);
158326fbe8dcSKarl Rupp         col++;
158426fbe8dcSKarl Rupp         a += bs;
15850ac07820SSatish Balay       }
15860ac07820SSatish Balay     }
15870ac07820SSatish Balay   }
1588606d414cSSatish Balay   ierr = PetscFree(rvals);CHKERRQ(ierr);
15890ac07820SSatish Balay   ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
15900ac07820SSatish Balay   ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
15910ac07820SSatish Balay 
1592cf37664fSBarry Smith   if (reuse == MAT_INITIAL_MATRIX || reuse == MAT_REUSE_MATRIX) *matout = B;
159326fbe8dcSKarl Rupp   else {
159428be2f97SBarry Smith     ierr = MatHeaderMerge(A,&B);CHKERRQ(ierr);
15950ac07820SSatish Balay   }
15963a40ed3dSBarry Smith   PetscFunctionReturn(0);
15970ac07820SSatish Balay }
15980e95ebc0SSatish Balay 
1599dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_MPIBAIJ(Mat mat,Vec ll,Vec rr)
16000e95ebc0SSatish Balay {
160136c4a09eSSatish Balay   Mat_MPIBAIJ    *baij = (Mat_MPIBAIJ*)mat->data;
160236c4a09eSSatish Balay   Mat            a     = baij->A,b = baij->B;
1603dfbe8321SBarry Smith   PetscErrorCode ierr;
1604b24ad042SBarry Smith   PetscInt       s1,s2,s3;
16050e95ebc0SSatish Balay 
1606d64ed03dSBarry Smith   PetscFunctionBegin;
160736c4a09eSSatish Balay   ierr = MatGetLocalSize(mat,&s2,&s3);CHKERRQ(ierr);
160836c4a09eSSatish Balay   if (rr) {
160936c4a09eSSatish Balay     ierr = VecGetLocalSize(rr,&s1);CHKERRQ(ierr);
1610e32f2f54SBarry Smith     if (s1!=s3) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"right vector non-conforming local size");
161136c4a09eSSatish Balay     /* Overlap communication with computation. */
1612ca9f406cSSatish Balay     ierr = VecScatterBegin(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
161336c4a09eSSatish Balay   }
16140e95ebc0SSatish Balay   if (ll) {
16150e95ebc0SSatish Balay     ierr = VecGetLocalSize(ll,&s1);CHKERRQ(ierr);
1616e32f2f54SBarry Smith     if (s1!=s2) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"left vector non-conforming local size");
16170298fd71SBarry Smith     ierr = (*b->ops->diagonalscale)(b,ll,NULL);CHKERRQ(ierr);
16180e95ebc0SSatish Balay   }
161936c4a09eSSatish Balay   /* scale  the diagonal block */
162036c4a09eSSatish Balay   ierr = (*a->ops->diagonalscale)(a,ll,rr);CHKERRQ(ierr);
162136c4a09eSSatish Balay 
162236c4a09eSSatish Balay   if (rr) {
162336c4a09eSSatish Balay     /* Do a scatter end and then right scale the off-diagonal block */
1624ca9f406cSSatish Balay     ierr = VecScatterEnd(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
16250298fd71SBarry Smith     ierr = (*b->ops->diagonalscale)(b,NULL,baij->lvec);CHKERRQ(ierr);
162636c4a09eSSatish Balay   }
16273a40ed3dSBarry Smith   PetscFunctionReturn(0);
16280e95ebc0SSatish Balay }
16290e95ebc0SSatish Balay 
16302b40b63fSBarry Smith PetscErrorCode MatZeroRows_MPIBAIJ(Mat A,PetscInt N,const PetscInt rows[],PetscScalar diag,Vec x,Vec b)
16310ac07820SSatish Balay {
16320ac07820SSatish Balay   Mat_MPIBAIJ   *l      = (Mat_MPIBAIJ *) A->data;
163365a92638SMatthew G. Knepley   PetscInt      *lrows;
16346e520ac8SStefano Zampini   PetscInt       r, len;
163594342113SStefano Zampini   PetscBool      cong;
16366849ba73SBarry Smith   PetscErrorCode ierr;
16370ac07820SSatish Balay 
1638d64ed03dSBarry Smith   PetscFunctionBegin;
16396e520ac8SStefano Zampini   /* get locally owned rows */
16406e520ac8SStefano Zampini   ierr = MatZeroRowsMapLocal_Private(A,N,rows,&len,&lrows);CHKERRQ(ierr);
164197b48c8fSBarry Smith   /* fix right hand side if needed */
164297b48c8fSBarry Smith   if (x && b) {
164365a92638SMatthew G. Knepley     const PetscScalar *xx;
164465a92638SMatthew G. Knepley     PetscScalar       *bb;
164565a92638SMatthew G. Knepley 
164697b48c8fSBarry Smith     ierr = VecGetArrayRead(x,&xx);CHKERRQ(ierr);
164797b48c8fSBarry Smith     ierr = VecGetArray(b,&bb);CHKERRQ(ierr);
164865a92638SMatthew G. Knepley     for (r = 0; r < len; ++r) bb[lrows[r]] = diag*xx[lrows[r]];
164997b48c8fSBarry Smith     ierr = VecRestoreArrayRead(x,&xx);CHKERRQ(ierr);
165097b48c8fSBarry Smith     ierr = VecRestoreArray(b,&bb);CHKERRQ(ierr);
165197b48c8fSBarry Smith   }
165297b48c8fSBarry Smith 
16530ac07820SSatish Balay   /* actually zap the local rows */
165472dacd9aSBarry Smith   /*
165572dacd9aSBarry Smith         Zero the required rows. If the "diagonal block" of the matrix
1656a8c7a070SBarry Smith      is square and the user wishes to set the diagonal we use separate
165772dacd9aSBarry Smith      code so that MatSetValues() is not called for each diagonal allocating
165872dacd9aSBarry Smith      new memory, thus calling lots of mallocs and slowing things down.
165972dacd9aSBarry Smith 
166072dacd9aSBarry Smith   */
16619c957beeSSatish Balay   /* must zero l->B before l->A because the (diag) case below may put values into l->B*/
1662a34163a4SJed Brown   ierr = MatZeroRows_SeqBAIJ(l->B,len,lrows,0.0,NULL,NULL);CHKERRQ(ierr);
166394342113SStefano Zampini   ierr = MatHasCongruentLayouts(A,&cong);CHKERRQ(ierr);
166494342113SStefano Zampini   if ((diag != 0.0) && cong) {
1665a34163a4SJed Brown     ierr = MatZeroRows_SeqBAIJ(l->A,len,lrows,diag,NULL,NULL);CHKERRQ(ierr);
1666f4df32b1SMatthew Knepley   } else if (diag != 0.0) {
166765a92638SMatthew G. Knepley     ierr = MatZeroRows_SeqBAIJ(l->A,len,lrows,0.0,0,0);CHKERRQ(ierr);
1668e7e72b3dSBarry Smith     if (((Mat_SeqBAIJ*)l->A->data)->nonew) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"MatZeroRows() on rectangular matrices cannot be used with the Mat options \n\
1669512a5fc5SBarry Smith        MAT_NEW_NONZERO_LOCATIONS,MAT_NEW_NONZERO_LOCATION_ERR,MAT_NEW_NONZERO_ALLOCATION_ERR");
167065a92638SMatthew G. Knepley     for (r = 0; r < len; ++r) {
167165a92638SMatthew G. Knepley       const PetscInt row = lrows[r] + A->rmap->rstart;
1672f4df32b1SMatthew Knepley       ierr = MatSetValues(A,1,&row,1,&row,&diag,INSERT_VALUES);CHKERRQ(ierr);
1673a07cd24cSSatish Balay     }
1674a07cd24cSSatish Balay     ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
1675a07cd24cSSatish Balay     ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
16769c957beeSSatish Balay   } else {
1677a34163a4SJed Brown     ierr = MatZeroRows_SeqBAIJ(l->A,len,lrows,0.0,NULL,NULL);CHKERRQ(ierr);
1678a07cd24cSSatish Balay   }
1679606d414cSSatish Balay   ierr = PetscFree(lrows);CHKERRQ(ierr);
16804f9cfa9eSBarry Smith 
16814f9cfa9eSBarry Smith   /* only change matrix nonzero state if pattern was allowed to be changed */
16824f9cfa9eSBarry Smith   if (!((Mat_SeqBAIJ*)(l->A->data))->keepnonzeropattern) {
1683e56f5c9eSBarry Smith     PetscObjectState state = l->A->nonzerostate + l->B->nonzerostate;
1684b2566f29SBarry Smith     ierr = MPIU_Allreduce(&state,&A->nonzerostate,1,MPIU_INT64,MPI_SUM,PetscObjectComm((PetscObject)A));CHKERRQ(ierr);
1685e56f5c9eSBarry Smith   }
16863a40ed3dSBarry Smith   PetscFunctionReturn(0);
16870ac07820SSatish Balay }
168872dacd9aSBarry Smith 
16896f0a72daSMatthew G. Knepley PetscErrorCode MatZeroRowsColumns_MPIBAIJ(Mat A,PetscInt N,const PetscInt rows[],PetscScalar diag,Vec x,Vec b)
16906f0a72daSMatthew G. Knepley {
16916f0a72daSMatthew G. Knepley   Mat_MPIBAIJ       *l = (Mat_MPIBAIJ*)A->data;
16926f0a72daSMatthew G. Knepley   PetscErrorCode    ierr;
1693131c27b5Sprj-   PetscMPIInt       n = A->rmap->n,p = 0;
1694131c27b5Sprj-   PetscInt          i,j,k,r,len = 0,row,col,count;
16956f0a72daSMatthew G. Knepley   PetscInt          *lrows,*owners = A->rmap->range;
16966f0a72daSMatthew G. Knepley   PetscSFNode       *rrows;
16976f0a72daSMatthew G. Knepley   PetscSF           sf;
16986f0a72daSMatthew G. Knepley   const PetscScalar *xx;
16996f0a72daSMatthew G. Knepley   PetscScalar       *bb,*mask;
17006f0a72daSMatthew G. Knepley   Vec               xmask,lmask;
17016f0a72daSMatthew G. Knepley   Mat_SeqBAIJ       *baij = (Mat_SeqBAIJ*)l->B->data;
17026f0a72daSMatthew G. Knepley   PetscInt           bs = A->rmap->bs, bs2 = baij->bs2;
17036f0a72daSMatthew G. Knepley   PetscScalar       *aa;
17046f0a72daSMatthew G. Knepley 
17056f0a72daSMatthew G. Knepley   PetscFunctionBegin;
17066f0a72daSMatthew G. Knepley   /* Create SF where leaves are input rows and roots are owned rows */
17076f0a72daSMatthew G. Knepley   ierr = PetscMalloc1(n, &lrows);CHKERRQ(ierr);
17086f0a72daSMatthew G. Knepley   for (r = 0; r < n; ++r) lrows[r] = -1;
17096f0a72daSMatthew G. Knepley   ierr = PetscMalloc1(N, &rrows);CHKERRQ(ierr);
17106f0a72daSMatthew G. Knepley   for (r = 0; r < N; ++r) {
17116f0a72daSMatthew G. Knepley     const PetscInt idx   = rows[r];
17125ba17502SJed Brown     if (idx < 0 || A->rmap->N <= idx) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row %D out of range [0,%D)",idx,A->rmap->N);
17135ba17502SJed Brown     if (idx < owners[p] || owners[p+1] <= idx) { /* short-circuit the search if the last p owns this row too */
17145ba17502SJed Brown       ierr = PetscLayoutFindOwner(A->rmap,idx,&p);CHKERRQ(ierr);
17155ba17502SJed Brown     }
17166f0a72daSMatthew G. Knepley     rrows[r].rank  = p;
17176f0a72daSMatthew G. Knepley     rrows[r].index = rows[r] - owners[p];
17186f0a72daSMatthew G. Knepley   }
17196f0a72daSMatthew G. Knepley   ierr = PetscSFCreate(PetscObjectComm((PetscObject) A), &sf);CHKERRQ(ierr);
17206f0a72daSMatthew G. Knepley   ierr = PetscSFSetGraph(sf, n, N, NULL, PETSC_OWN_POINTER, rrows, PETSC_OWN_POINTER);CHKERRQ(ierr);
17216f0a72daSMatthew G. Knepley   /* Collect flags for rows to be zeroed */
17226f0a72daSMatthew G. Knepley   ierr = PetscSFReduceBegin(sf, MPIU_INT, (PetscInt *) rows, lrows, MPI_LOR);CHKERRQ(ierr);
17236f0a72daSMatthew G. Knepley   ierr = PetscSFReduceEnd(sf, MPIU_INT, (PetscInt *) rows, lrows, MPI_LOR);CHKERRQ(ierr);
17246f0a72daSMatthew G. Knepley   ierr = PetscSFDestroy(&sf);CHKERRQ(ierr);
17256f0a72daSMatthew G. Knepley   /* Compress and put in row numbers */
17266f0a72daSMatthew G. Knepley   for (r = 0; r < n; ++r) if (lrows[r] >= 0) lrows[len++] = r;
17276f0a72daSMatthew G. Knepley   /* zero diagonal part of matrix */
17286f0a72daSMatthew G. Knepley   ierr = MatZeroRowsColumns(l->A,len,lrows,diag,x,b);CHKERRQ(ierr);
17296f0a72daSMatthew G. Knepley   /* handle off diagonal part of matrix */
17302a7a6963SBarry Smith   ierr = MatCreateVecs(A,&xmask,NULL);CHKERRQ(ierr);
17316f0a72daSMatthew G. Knepley   ierr = VecDuplicate(l->lvec,&lmask);CHKERRQ(ierr);
17326f0a72daSMatthew G. Knepley   ierr = VecGetArray(xmask,&bb);CHKERRQ(ierr);
17336f0a72daSMatthew G. Knepley   for (i=0; i<len; i++) bb[lrows[i]] = 1;
17346f0a72daSMatthew G. Knepley   ierr = VecRestoreArray(xmask,&bb);CHKERRQ(ierr);
17356f0a72daSMatthew G. Knepley   ierr = VecScatterBegin(l->Mvctx,xmask,lmask,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
17366f0a72daSMatthew G. Knepley   ierr = VecScatterEnd(l->Mvctx,xmask,lmask,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
17376f0a72daSMatthew G. Knepley   ierr = VecDestroy(&xmask);CHKERRQ(ierr);
17386f0a72daSMatthew G. Knepley   if (x) {
17396f0a72daSMatthew G. Knepley     ierr = VecScatterBegin(l->Mvctx,x,l->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
17406f0a72daSMatthew G. Knepley     ierr = VecScatterEnd(l->Mvctx,x,l->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
17416f0a72daSMatthew G. Knepley     ierr = VecGetArrayRead(l->lvec,&xx);CHKERRQ(ierr);
17426f0a72daSMatthew G. Knepley     ierr = VecGetArray(b,&bb);CHKERRQ(ierr);
17436f0a72daSMatthew G. Knepley   }
17446f0a72daSMatthew G. Knepley   ierr = VecGetArray(lmask,&mask);CHKERRQ(ierr);
17456f0a72daSMatthew G. Knepley   /* remove zeroed rows of off diagonal matrix */
17466f0a72daSMatthew G. Knepley   for (i = 0; i < len; ++i) {
17476f0a72daSMatthew G. Knepley     row   = lrows[i];
17486f0a72daSMatthew G. Knepley     count = (baij->i[row/bs +1] - baij->i[row/bs])*bs;
17496f0a72daSMatthew G. Knepley     aa    = ((MatScalar*)(baij->a)) + baij->i[row/bs]*bs2 + (row%bs);
17506f0a72daSMatthew G. Knepley     for (k = 0; k < count; ++k) {
17516f0a72daSMatthew G. Knepley       aa[0] = 0.0;
17526f0a72daSMatthew G. Knepley       aa   += bs;
17536f0a72daSMatthew G. Knepley     }
17546f0a72daSMatthew G. Knepley   }
17556f0a72daSMatthew G. Knepley   /* loop over all elements of off process part of matrix zeroing removed columns*/
17566f0a72daSMatthew G. Knepley   for (i = 0; i < l->B->rmap->N; ++i) {
17576f0a72daSMatthew G. Knepley     row = i/bs;
17586f0a72daSMatthew G. Knepley     for (j = baij->i[row]; j < baij->i[row+1]; ++j) {
17596f0a72daSMatthew G. Knepley       for (k = 0; k < bs; ++k) {
17606f0a72daSMatthew G. Knepley         col = bs*baij->j[j] + k;
17616f0a72daSMatthew G. Knepley         if (PetscAbsScalar(mask[col])) {
17626f0a72daSMatthew G. Knepley           aa = ((MatScalar*)(baij->a)) + j*bs2 + (i%bs) + bs*k;
176389ae1891SBarry Smith           if (x) bb[i] -= aa[0]*xx[col];
17646f0a72daSMatthew G. Knepley           aa[0] = 0.0;
17656f0a72daSMatthew G. Knepley         }
17666f0a72daSMatthew G. Knepley       }
17676f0a72daSMatthew G. Knepley     }
17686f0a72daSMatthew G. Knepley   }
17696f0a72daSMatthew G. Knepley   if (x) {
17706f0a72daSMatthew G. Knepley     ierr = VecRestoreArray(b,&bb);CHKERRQ(ierr);
17716f0a72daSMatthew G. Knepley     ierr = VecRestoreArrayRead(l->lvec,&xx);CHKERRQ(ierr);
17726f0a72daSMatthew G. Knepley   }
17736f0a72daSMatthew G. Knepley   ierr = VecRestoreArray(lmask,&mask);CHKERRQ(ierr);
17746f0a72daSMatthew G. Knepley   ierr = VecDestroy(&lmask);CHKERRQ(ierr);
17756f0a72daSMatthew G. Knepley   ierr = PetscFree(lrows);CHKERRQ(ierr);
17764f9cfa9eSBarry Smith 
17774f9cfa9eSBarry Smith   /* only change matrix nonzero state if pattern was allowed to be changed */
17784f9cfa9eSBarry Smith   if (!((Mat_SeqBAIJ*)(l->A->data))->keepnonzeropattern) {
17794f9cfa9eSBarry Smith     PetscObjectState state = l->A->nonzerostate + l->B->nonzerostate;
1780b2566f29SBarry Smith     ierr = MPIU_Allreduce(&state,&A->nonzerostate,1,MPIU_INT64,MPI_SUM,PetscObjectComm((PetscObject)A));CHKERRQ(ierr);
17814f9cfa9eSBarry Smith   }
17826f0a72daSMatthew G. Knepley   PetscFunctionReturn(0);
17836f0a72daSMatthew G. Knepley }
17846f0a72daSMatthew G. Knepley 
1785dfbe8321SBarry Smith PetscErrorCode MatSetUnfactored_MPIBAIJ(Mat A)
1786bb5a7306SBarry Smith {
1787bb5a7306SBarry Smith   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)A->data;
1788dfbe8321SBarry Smith   PetscErrorCode ierr;
1789d64ed03dSBarry Smith 
1790d64ed03dSBarry Smith   PetscFunctionBegin;
1791bb5a7306SBarry Smith   ierr = MatSetUnfactored(a->A);CHKERRQ(ierr);
17923a40ed3dSBarry Smith   PetscFunctionReturn(0);
1793bb5a7306SBarry Smith }
1794bb5a7306SBarry Smith 
17956849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIBAIJ(Mat,MatDuplicateOption,Mat*);
17960ac07820SSatish Balay 
1797ace3abfcSBarry Smith PetscErrorCode MatEqual_MPIBAIJ(Mat A,Mat B,PetscBool  *flag)
17987fc3c18eSBarry Smith {
17997fc3c18eSBarry Smith   Mat_MPIBAIJ    *matB = (Mat_MPIBAIJ*)B->data,*matA = (Mat_MPIBAIJ*)A->data;
18007fc3c18eSBarry Smith   Mat            a,b,c,d;
1801ace3abfcSBarry Smith   PetscBool      flg;
1802dfbe8321SBarry Smith   PetscErrorCode ierr;
18037fc3c18eSBarry Smith 
18047fc3c18eSBarry Smith   PetscFunctionBegin;
18057fc3c18eSBarry Smith   a = matA->A; b = matA->B;
18067fc3c18eSBarry Smith   c = matB->A; d = matB->B;
18077fc3c18eSBarry Smith 
18087fc3c18eSBarry Smith   ierr = MatEqual(a,c,&flg);CHKERRQ(ierr);
1809abc0a331SBarry Smith   if (flg) {
18107fc3c18eSBarry Smith     ierr = MatEqual(b,d,&flg);CHKERRQ(ierr);
18117fc3c18eSBarry Smith   }
1812b2566f29SBarry Smith   ierr = MPIU_Allreduce(&flg,flag,1,MPIU_BOOL,MPI_LAND,PetscObjectComm((PetscObject)A));CHKERRQ(ierr);
18137fc3c18eSBarry Smith   PetscFunctionReturn(0);
18147fc3c18eSBarry Smith }
18157fc3c18eSBarry Smith 
18163c896bc6SHong Zhang PetscErrorCode MatCopy_MPIBAIJ(Mat A,Mat B,MatStructure str)
18173c896bc6SHong Zhang {
18183c896bc6SHong Zhang   PetscErrorCode ierr;
18193c896bc6SHong Zhang   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)A->data;
18203c896bc6SHong Zhang   Mat_MPIBAIJ    *b = (Mat_MPIBAIJ*)B->data;
18213c896bc6SHong Zhang 
18223c896bc6SHong Zhang   PetscFunctionBegin;
18233c896bc6SHong Zhang   /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */
18243c896bc6SHong Zhang   if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) {
18253c896bc6SHong Zhang     ierr = MatCopy_Basic(A,B,str);CHKERRQ(ierr);
18263c896bc6SHong Zhang   } else {
18273c896bc6SHong Zhang     ierr = MatCopy(a->A,b->A,str);CHKERRQ(ierr);
18283c896bc6SHong Zhang     ierr = MatCopy(a->B,b->B,str);CHKERRQ(ierr);
18293c896bc6SHong Zhang   }
1830cdc753b6SBarry Smith   ierr = PetscObjectStateIncrease((PetscObject)B);CHKERRQ(ierr);
18313c896bc6SHong Zhang   PetscFunctionReturn(0);
18323c896bc6SHong Zhang }
1833273d9f13SBarry Smith 
18344994cf47SJed Brown PetscErrorCode MatSetUp_MPIBAIJ(Mat A)
1835273d9f13SBarry Smith {
1836dfbe8321SBarry Smith   PetscErrorCode ierr;
1837273d9f13SBarry Smith 
1838273d9f13SBarry Smith   PetscFunctionBegin;
1839535b19f3SBarry Smith   ierr = MatMPIBAIJSetPreallocation(A,A->rmap->bs,PETSC_DEFAULT,0,PETSC_DEFAULT,0);CHKERRQ(ierr);
1840273d9f13SBarry Smith   PetscFunctionReturn(0);
1841273d9f13SBarry Smith }
1842273d9f13SBarry Smith 
18434de5dceeSHong Zhang PetscErrorCode MatAXPYGetPreallocation_MPIBAIJ(Mat Y,const PetscInt *yltog,Mat X,const PetscInt *xltog,PetscInt *nnz)
18444de5dceeSHong Zhang {
1845001ddc4fSHong Zhang   PetscErrorCode ierr;
1846001ddc4fSHong Zhang   PetscInt       bs = Y->rmap->bs,m = Y->rmap->N/bs;
18474de5dceeSHong Zhang   Mat_SeqBAIJ    *x = (Mat_SeqBAIJ*)X->data;
18484de5dceeSHong Zhang   Mat_SeqBAIJ    *y = (Mat_SeqBAIJ*)Y->data;
18494de5dceeSHong Zhang 
18504de5dceeSHong Zhang   PetscFunctionBegin;
1851001ddc4fSHong Zhang   ierr = MatAXPYGetPreallocation_MPIX_private(m,x->i,x->j,xltog,y->i,y->j,yltog,nnz);CHKERRQ(ierr);
18524de5dceeSHong Zhang   PetscFunctionReturn(0);
18534de5dceeSHong Zhang }
18544de5dceeSHong Zhang 
18554fe895cdSHong Zhang PetscErrorCode MatAXPY_MPIBAIJ(Mat Y,PetscScalar a,Mat X,MatStructure str)
18564fe895cdSHong Zhang {
18574fe895cdSHong Zhang   PetscErrorCode ierr;
18584fe895cdSHong Zhang   Mat_MPIBAIJ    *xx=(Mat_MPIBAIJ*)X->data,*yy=(Mat_MPIBAIJ*)Y->data;
18594fe895cdSHong Zhang   PetscBLASInt   bnz,one=1;
18604fe895cdSHong Zhang   Mat_SeqBAIJ    *x,*y;
1861b31f67cfSBarry Smith   PetscInt       bs2 = Y->rmap->bs*Y->rmap->bs;
18624fe895cdSHong Zhang 
18634fe895cdSHong Zhang   PetscFunctionBegin;
18644fe895cdSHong Zhang   if (str == SAME_NONZERO_PATTERN) {
18654fe895cdSHong Zhang     PetscScalar alpha = a;
18664fe895cdSHong Zhang     x    = (Mat_SeqBAIJ*)xx->A->data;
18674fe895cdSHong Zhang     y    = (Mat_SeqBAIJ*)yy->A->data;
1868b31f67cfSBarry Smith     ierr = PetscBLASIntCast(x->nz*bs2,&bnz);CHKERRQ(ierr);
18698b83055fSJed Brown     PetscStackCallBLAS("BLASaxpy",BLASaxpy_(&bnz,&alpha,x->a,&one,y->a,&one));
18704fe895cdSHong Zhang     x    = (Mat_SeqBAIJ*)xx->B->data;
18714fe895cdSHong Zhang     y    = (Mat_SeqBAIJ*)yy->B->data;
1872b31f67cfSBarry Smith     ierr = PetscBLASIntCast(x->nz*bs2,&bnz);CHKERRQ(ierr);
18738b83055fSJed Brown     PetscStackCallBLAS("BLASaxpy",BLASaxpy_(&bnz,&alpha,x->a,&one,y->a,&one));
1874a3fa217bSJose E. Roman     ierr = PetscObjectStateIncrease((PetscObject)Y);CHKERRQ(ierr);
1875ab784542SHong Zhang   } else if (str == SUBSET_NONZERO_PATTERN) { /* nonzeros of X is a subset of Y's */
1876ab784542SHong Zhang     ierr = MatAXPY_Basic(Y,a,X,str);CHKERRQ(ierr);
18774fe895cdSHong Zhang   } else {
18784de5dceeSHong Zhang     Mat      B;
18794de5dceeSHong Zhang     PetscInt *nnz_d,*nnz_o,bs=Y->rmap->bs;
18804de5dceeSHong Zhang     ierr = PetscMalloc1(yy->A->rmap->N,&nnz_d);CHKERRQ(ierr);
18814de5dceeSHong Zhang     ierr = PetscMalloc1(yy->B->rmap->N,&nnz_o);CHKERRQ(ierr);
18824de5dceeSHong Zhang     ierr = MatCreate(PetscObjectComm((PetscObject)Y),&B);CHKERRQ(ierr);
18834de5dceeSHong Zhang     ierr = PetscObjectSetName((PetscObject)B,((PetscObject)Y)->name);CHKERRQ(ierr);
18844de5dceeSHong Zhang     ierr = MatSetSizes(B,Y->rmap->n,Y->cmap->n,Y->rmap->N,Y->cmap->N);CHKERRQ(ierr);
18854de5dceeSHong Zhang     ierr = MatSetBlockSizesFromMats(B,Y,Y);CHKERRQ(ierr);
18864de5dceeSHong Zhang     ierr = MatSetType(B,MATMPIBAIJ);CHKERRQ(ierr);
18874de5dceeSHong Zhang     ierr = MatAXPYGetPreallocation_SeqBAIJ(yy->A,xx->A,nnz_d);CHKERRQ(ierr);
18884de5dceeSHong Zhang     ierr = MatAXPYGetPreallocation_MPIBAIJ(yy->B,yy->garray,xx->B,xx->garray,nnz_o);CHKERRQ(ierr);
18894de5dceeSHong Zhang     ierr = MatMPIBAIJSetPreallocation(B,bs,0,nnz_d,0,nnz_o);CHKERRQ(ierr);
18904de5dceeSHong Zhang     /* MatAXPY_BasicWithPreallocation() for BAIJ matrix is much slower than AIJ, even for bs=1 ! */
18914de5dceeSHong Zhang     ierr = MatAXPY_BasicWithPreallocation(B,Y,a,X,str);CHKERRQ(ierr);
189228be2f97SBarry Smith     ierr = MatHeaderReplace(Y,&B);CHKERRQ(ierr);
18934de5dceeSHong Zhang     ierr = PetscFree(nnz_d);CHKERRQ(ierr);
18944de5dceeSHong Zhang     ierr = PetscFree(nnz_o);CHKERRQ(ierr);
18954fe895cdSHong Zhang   }
18964fe895cdSHong Zhang   PetscFunctionReturn(0);
18974fe895cdSHong Zhang }
18984fe895cdSHong Zhang 
189999cafbc1SBarry Smith PetscErrorCode MatRealPart_MPIBAIJ(Mat A)
190099cafbc1SBarry Smith {
190199cafbc1SBarry Smith   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)A->data;
190299cafbc1SBarry Smith   PetscErrorCode ierr;
190399cafbc1SBarry Smith 
190499cafbc1SBarry Smith   PetscFunctionBegin;
190599cafbc1SBarry Smith   ierr = MatRealPart(a->A);CHKERRQ(ierr);
190699cafbc1SBarry Smith   ierr = MatRealPart(a->B);CHKERRQ(ierr);
190799cafbc1SBarry Smith   PetscFunctionReturn(0);
190899cafbc1SBarry Smith }
190999cafbc1SBarry Smith 
191099cafbc1SBarry Smith PetscErrorCode MatImaginaryPart_MPIBAIJ(Mat A)
191199cafbc1SBarry Smith {
191299cafbc1SBarry Smith   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)A->data;
191399cafbc1SBarry Smith   PetscErrorCode ierr;
191499cafbc1SBarry Smith 
191599cafbc1SBarry Smith   PetscFunctionBegin;
191699cafbc1SBarry Smith   ierr = MatImaginaryPart(a->A);CHKERRQ(ierr);
191799cafbc1SBarry Smith   ierr = MatImaginaryPart(a->B);CHKERRQ(ierr);
191899cafbc1SBarry Smith   PetscFunctionReturn(0);
191999cafbc1SBarry Smith }
192099cafbc1SBarry Smith 
19217dae84e0SHong Zhang PetscErrorCode MatCreateSubMatrix_MPIBAIJ(Mat mat,IS isrow,IS iscol,MatReuse call,Mat *newmat)
19224aa3045dSJed Brown {
19234aa3045dSJed Brown   PetscErrorCode ierr;
19244aa3045dSJed Brown   IS             iscol_local;
19254aa3045dSJed Brown   PetscInt       csize;
19264aa3045dSJed Brown 
19274aa3045dSJed Brown   PetscFunctionBegin;
19284aa3045dSJed Brown   ierr = ISGetLocalSize(iscol,&csize);CHKERRQ(ierr);
1929b79d0421SJed Brown   if (call == MAT_REUSE_MATRIX) {
1930b79d0421SJed Brown     ierr = PetscObjectQuery((PetscObject)*newmat,"ISAllGather",(PetscObject*)&iscol_local);CHKERRQ(ierr);
1931e32f2f54SBarry Smith     if (!iscol_local) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Submatrix passed in was not used before, cannot reuse");
1932b79d0421SJed Brown   } else {
19334aa3045dSJed Brown     ierr = ISAllGather(iscol,&iscol_local);CHKERRQ(ierr);
1934b79d0421SJed Brown   }
19357dae84e0SHong Zhang   ierr = MatCreateSubMatrix_MPIBAIJ_Private(mat,isrow,iscol_local,csize,call,newmat);CHKERRQ(ierr);
1936b79d0421SJed Brown   if (call == MAT_INITIAL_MATRIX) {
1937b79d0421SJed Brown     ierr = PetscObjectCompose((PetscObject)*newmat,"ISAllGather",(PetscObject)iscol_local);CHKERRQ(ierr);
19386bf464f9SBarry Smith     ierr = ISDestroy(&iscol_local);CHKERRQ(ierr);
1939b79d0421SJed Brown   }
19404aa3045dSJed Brown   PetscFunctionReturn(0);
19414aa3045dSJed Brown }
194217df9f7cSHong Zhang 
194382094794SBarry Smith /*
194482094794SBarry Smith   Not great since it makes two copies of the submatrix, first an SeqBAIJ
194582094794SBarry Smith   in local and then by concatenating the local matrices the end result.
19467dae84e0SHong Zhang   Writing it directly would be much like MatCreateSubMatrices_MPIBAIJ().
19478f46ffcaSHong Zhang   This routine is used for BAIJ and SBAIJ matrices (unfortunate dependency).
194882094794SBarry Smith */
19497dae84e0SHong Zhang PetscErrorCode MatCreateSubMatrix_MPIBAIJ_Private(Mat mat,IS isrow,IS iscol,PetscInt csize,MatReuse call,Mat *newmat)
195082094794SBarry Smith {
195182094794SBarry Smith   PetscErrorCode ierr;
195282094794SBarry Smith   PetscMPIInt    rank,size;
195382094794SBarry Smith   PetscInt       i,m,n,rstart,row,rend,nz,*cwork,j,bs;
1954c9ffca76SHong Zhang   PetscInt       *ii,*jj,nlocal,*dlens,*olens,dlen,olen,jend,mglobal;
195529dcf524SDmitry Karpeev   Mat            M,Mreuse;
195682094794SBarry Smith   MatScalar      *vwork,*aa;
1957ce94432eSBarry Smith   MPI_Comm       comm;
195829dcf524SDmitry Karpeev   IS             isrow_new, iscol_new;
195982094794SBarry Smith   Mat_SeqBAIJ    *aij;
196082094794SBarry Smith 
196182094794SBarry Smith   PetscFunctionBegin;
1962ce94432eSBarry Smith   ierr = PetscObjectGetComm((PetscObject)mat,&comm);CHKERRQ(ierr);
196382094794SBarry Smith   ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr);
196482094794SBarry Smith   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
196529dcf524SDmitry Karpeev   /* The compression and expansion should be avoided. Doesn't point
196629dcf524SDmitry Karpeev      out errors, might change the indices, hence buggey */
196729dcf524SDmitry Karpeev   ierr = ISCompressIndicesGeneral(mat->rmap->N,mat->rmap->n,mat->rmap->bs,1,&isrow,&isrow_new);CHKERRQ(ierr);
196829dcf524SDmitry Karpeev   ierr = ISCompressIndicesGeneral(mat->cmap->N,mat->cmap->n,mat->cmap->bs,1,&iscol,&iscol_new);CHKERRQ(ierr);
196982094794SBarry Smith 
197082094794SBarry Smith   if (call ==  MAT_REUSE_MATRIX) {
197182094794SBarry Smith     ierr = PetscObjectQuery((PetscObject)*newmat,"SubMatrix",(PetscObject*)&Mreuse);CHKERRQ(ierr);
1972e32f2f54SBarry Smith     if (!Mreuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Submatrix passed in was not used before, cannot reuse");
19737dae84e0SHong Zhang     ierr = MatCreateSubMatrices_MPIBAIJ_local(mat,1,&isrow_new,&iscol_new,MAT_REUSE_MATRIX,&Mreuse);CHKERRQ(ierr);
197482094794SBarry Smith   } else {
19757dae84e0SHong Zhang     ierr = MatCreateSubMatrices_MPIBAIJ_local(mat,1,&isrow_new,&iscol_new,MAT_INITIAL_MATRIX,&Mreuse);CHKERRQ(ierr);
197682094794SBarry Smith   }
197729dcf524SDmitry Karpeev   ierr = ISDestroy(&isrow_new);CHKERRQ(ierr);
197829dcf524SDmitry Karpeev   ierr = ISDestroy(&iscol_new);CHKERRQ(ierr);
197982094794SBarry Smith   /*
198082094794SBarry Smith       m - number of local rows
198182094794SBarry Smith       n - number of columns (same on all processors)
198282094794SBarry Smith       rstart - first row in new global matrix generated
198382094794SBarry Smith   */
198482094794SBarry Smith   ierr = MatGetBlockSize(mat,&bs);CHKERRQ(ierr);
198582094794SBarry Smith   ierr = MatGetSize(Mreuse,&m,&n);CHKERRQ(ierr);
198682094794SBarry Smith   m    = m/bs;
198782094794SBarry Smith   n    = n/bs;
198882094794SBarry Smith 
198982094794SBarry Smith   if (call == MAT_INITIAL_MATRIX) {
199082094794SBarry Smith     aij = (Mat_SeqBAIJ*)(Mreuse)->data;
199182094794SBarry Smith     ii  = aij->i;
199282094794SBarry Smith     jj  = aij->j;
199382094794SBarry Smith 
199482094794SBarry Smith     /*
199582094794SBarry Smith         Determine the number of non-zeros in the diagonal and off-diagonal
199682094794SBarry Smith         portions of the matrix in order to do correct preallocation
199782094794SBarry Smith     */
199882094794SBarry Smith 
199982094794SBarry Smith     /* first get start and end of "diagonal" columns */
200082094794SBarry Smith     if (csize == PETSC_DECIDE) {
200182094794SBarry Smith       ierr = ISGetSize(isrow,&mglobal);CHKERRQ(ierr);
200282094794SBarry Smith       if (mglobal == n*bs) { /* square matrix */
200382094794SBarry Smith         nlocal = m;
200482094794SBarry Smith       } else {
200582094794SBarry Smith         nlocal = n/size + ((n % size) > rank);
200682094794SBarry Smith       }
200782094794SBarry Smith     } else {
200882094794SBarry Smith       nlocal = csize/bs;
200982094794SBarry Smith     }
201082094794SBarry Smith     ierr   = MPI_Scan(&nlocal,&rend,1,MPIU_INT,MPI_SUM,comm);CHKERRQ(ierr);
201182094794SBarry Smith     rstart = rend - nlocal;
201265e19b50SBarry Smith     if (rank == size - 1 && rend != n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Local column sizes %D do not add up to total number of columns %D",rend,n);
201382094794SBarry Smith 
201482094794SBarry Smith     /* next, compute all the lengths */
2015dcca6d9dSJed Brown     ierr  = PetscMalloc2(m+1,&dlens,m+1,&olens);CHKERRQ(ierr);
201682094794SBarry Smith     for (i=0; i<m; i++) {
201782094794SBarry Smith       jend = ii[i+1] - ii[i];
201882094794SBarry Smith       olen = 0;
201982094794SBarry Smith       dlen = 0;
202082094794SBarry Smith       for (j=0; j<jend; j++) {
202182094794SBarry Smith         if (*jj < rstart || *jj >= rend) olen++;
202282094794SBarry Smith         else dlen++;
202382094794SBarry Smith         jj++;
202482094794SBarry Smith       }
202582094794SBarry Smith       olens[i] = olen;
202682094794SBarry Smith       dlens[i] = dlen;
202782094794SBarry Smith     }
202882094794SBarry Smith     ierr = MatCreate(comm,&M);CHKERRQ(ierr);
202982094794SBarry Smith     ierr = MatSetSizes(M,bs*m,bs*nlocal,PETSC_DECIDE,bs*n);CHKERRQ(ierr);
203082094794SBarry Smith     ierr = MatSetType(M,((PetscObject)mat)->type_name);CHKERRQ(ierr);
203182094794SBarry Smith     ierr = MatMPIBAIJSetPreallocation(M,bs,0,dlens,0,olens);CHKERRQ(ierr);
20328f46ffcaSHong Zhang     ierr = MatMPISBAIJSetPreallocation(M,bs,0,dlens,0,olens);CHKERRQ(ierr);
2033eb9baa12SBarry Smith     ierr = PetscFree2(dlens,olens);CHKERRQ(ierr);
203482094794SBarry Smith   } else {
203582094794SBarry Smith     PetscInt ml,nl;
203682094794SBarry Smith 
203782094794SBarry Smith     M    = *newmat;
203882094794SBarry Smith     ierr = MatGetLocalSize(M,&ml,&nl);CHKERRQ(ierr);
2039e32f2f54SBarry Smith     if (ml != m) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Previous matrix must be same size/layout as request");
204082094794SBarry Smith     ierr = MatZeroEntries(M);CHKERRQ(ierr);
204182094794SBarry Smith     /*
204282094794SBarry Smith          The next two lines are needed so we may call MatSetValues_MPIAIJ() below directly,
204382094794SBarry Smith        rather than the slower MatSetValues().
204482094794SBarry Smith     */
204582094794SBarry Smith     M->was_assembled = PETSC_TRUE;
204682094794SBarry Smith     M->assembled     = PETSC_FALSE;
204782094794SBarry Smith   }
204882094794SBarry Smith   ierr = MatSetOption(M,MAT_ROW_ORIENTED,PETSC_FALSE);CHKERRQ(ierr);
204982094794SBarry Smith   ierr = MatGetOwnershipRange(M,&rstart,&rend);CHKERRQ(ierr);
205082094794SBarry Smith   aij  = (Mat_SeqBAIJ*)(Mreuse)->data;
205182094794SBarry Smith   ii   = aij->i;
205282094794SBarry Smith   jj   = aij->j;
205382094794SBarry Smith   aa   = aij->a;
205482094794SBarry Smith   for (i=0; i<m; i++) {
205582094794SBarry Smith     row   = rstart/bs + i;
205682094794SBarry Smith     nz    = ii[i+1] - ii[i];
205782094794SBarry Smith     cwork = jj;     jj += nz;
205875f6568bSJed Brown     vwork = aa;     aa += nz*bs*bs;
205982094794SBarry Smith     ierr  = MatSetValuesBlocked_MPIBAIJ(M,1,&row,nz,cwork,vwork,INSERT_VALUES);CHKERRQ(ierr);
206082094794SBarry Smith   }
206182094794SBarry Smith 
206282094794SBarry Smith   ierr    = MatAssemblyBegin(M,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
206382094794SBarry Smith   ierr    = MatAssemblyEnd(M,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
206482094794SBarry Smith   *newmat = M;
206582094794SBarry Smith 
206682094794SBarry Smith   /* save submatrix used in processor for next request */
206782094794SBarry Smith   if (call ==  MAT_INITIAL_MATRIX) {
206882094794SBarry Smith     ierr = PetscObjectCompose((PetscObject)M,"SubMatrix",(PetscObject)Mreuse);CHKERRQ(ierr);
206982094794SBarry Smith     ierr = PetscObjectDereference((PetscObject)Mreuse);CHKERRQ(ierr);
207082094794SBarry Smith   }
207182094794SBarry Smith   PetscFunctionReturn(0);
207282094794SBarry Smith }
207382094794SBarry Smith 
207482094794SBarry Smith PetscErrorCode MatPermute_MPIBAIJ(Mat A,IS rowp,IS colp,Mat *B)
207582094794SBarry Smith {
207682094794SBarry Smith   MPI_Comm       comm,pcomm;
2077a0a83eb5SRémi Lacroix   PetscInt       clocal_size,nrows;
207882094794SBarry Smith   const PetscInt *rows;
2079dbf0e21dSBarry Smith   PetscMPIInt    size;
2080a0a83eb5SRémi Lacroix   IS             crowp,lcolp;
208182094794SBarry Smith   PetscErrorCode ierr;
208282094794SBarry Smith 
208382094794SBarry Smith   PetscFunctionBegin;
208482094794SBarry Smith   ierr = PetscObjectGetComm((PetscObject)A,&comm);CHKERRQ(ierr);
208582094794SBarry Smith   /* make a collective version of 'rowp' */
208682094794SBarry Smith   ierr = PetscObjectGetComm((PetscObject)rowp,&pcomm);CHKERRQ(ierr);
208782094794SBarry Smith   if (pcomm==comm) {
208882094794SBarry Smith     crowp = rowp;
208982094794SBarry Smith   } else {
209082094794SBarry Smith     ierr = ISGetSize(rowp,&nrows);CHKERRQ(ierr);
209182094794SBarry Smith     ierr = ISGetIndices(rowp,&rows);CHKERRQ(ierr);
209270b3c8c7SBarry Smith     ierr = ISCreateGeneral(comm,nrows,rows,PETSC_COPY_VALUES,&crowp);CHKERRQ(ierr);
209382094794SBarry Smith     ierr = ISRestoreIndices(rowp,&rows);CHKERRQ(ierr);
209482094794SBarry Smith   }
2095a0a83eb5SRémi Lacroix   ierr = ISSetPermutation(crowp);CHKERRQ(ierr);
2096a0a83eb5SRémi Lacroix   /* make a local version of 'colp' */
209782094794SBarry Smith   ierr = PetscObjectGetComm((PetscObject)colp,&pcomm);CHKERRQ(ierr);
2098dbf0e21dSBarry Smith   ierr = MPI_Comm_size(pcomm,&size);CHKERRQ(ierr);
2099dbf0e21dSBarry Smith   if (size==1) {
210082094794SBarry Smith     lcolp = colp;
210182094794SBarry Smith   } else {
210275f6568bSJed Brown     ierr = ISAllGather(colp,&lcolp);CHKERRQ(ierr);
210382094794SBarry Smith   }
2104dbf0e21dSBarry Smith   ierr = ISSetPermutation(lcolp);CHKERRQ(ierr);
210575f6568bSJed Brown   /* now we just get the submatrix */
21067afc1a8bSJed Brown   ierr = MatGetLocalSize(A,NULL,&clocal_size);CHKERRQ(ierr);
21077dae84e0SHong Zhang   ierr = MatCreateSubMatrix_MPIBAIJ_Private(A,crowp,lcolp,clocal_size,MAT_INITIAL_MATRIX,B);CHKERRQ(ierr);
2108a0a83eb5SRémi Lacroix   /* clean up */
2109a0a83eb5SRémi Lacroix   if (pcomm!=comm) {
2110a0a83eb5SRémi Lacroix     ierr = ISDestroy(&crowp);CHKERRQ(ierr);
2111a0a83eb5SRémi Lacroix   }
2112dbf0e21dSBarry Smith   if (size>1) {
21136bf464f9SBarry Smith     ierr = ISDestroy(&lcolp);CHKERRQ(ierr);
211482094794SBarry Smith   }
211582094794SBarry Smith   PetscFunctionReturn(0);
211682094794SBarry Smith }
211782094794SBarry Smith 
21187087cfbeSBarry Smith PetscErrorCode  MatGetGhosts_MPIBAIJ(Mat mat,PetscInt *nghosts,const PetscInt *ghosts[])
21198c7482ecSBarry Smith {
21208c7482ecSBarry Smith   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*) mat->data;
21218c7482ecSBarry Smith   Mat_SeqBAIJ *B    = (Mat_SeqBAIJ*)baij->B->data;
21228c7482ecSBarry Smith 
21238c7482ecSBarry Smith   PetscFunctionBegin;
212426fbe8dcSKarl Rupp   if (nghosts) *nghosts = B->nbs;
212526fbe8dcSKarl Rupp   if (ghosts) *ghosts = baij->garray;
21268c7482ecSBarry Smith   PetscFunctionReturn(0);
21278c7482ecSBarry Smith }
21288c7482ecSBarry Smith 
2129d1adec66SJed Brown PetscErrorCode MatGetSeqNonzeroStructure_MPIBAIJ(Mat A,Mat *newmat)
2130f6d58c54SBarry Smith {
2131f6d58c54SBarry Smith   Mat            B;
2132f6d58c54SBarry Smith   Mat_MPIBAIJ    *a  = (Mat_MPIBAIJ*)A->data;
2133f6d58c54SBarry Smith   Mat_SeqBAIJ    *ad = (Mat_SeqBAIJ*)a->A->data,*bd = (Mat_SeqBAIJ*)a->B->data;
2134f6d58c54SBarry Smith   Mat_SeqAIJ     *b;
2135f6d58c54SBarry Smith   PetscErrorCode ierr;
2136f6d58c54SBarry Smith   PetscMPIInt    size,rank,*recvcounts = 0,*displs = 0;
2137f6d58c54SBarry Smith   PetscInt       sendcount,i,*rstarts = A->rmap->range,n,cnt,j,bs = A->rmap->bs;
2138f6d58c54SBarry Smith   PetscInt       m,*garray = a->garray,*lens,*jsendbuf,*a_jsendbuf,*b_jsendbuf;
2139f6d58c54SBarry Smith 
2140f6d58c54SBarry Smith   PetscFunctionBegin;
2141ce94432eSBarry Smith   ierr = MPI_Comm_size(PetscObjectComm((PetscObject)A),&size);CHKERRQ(ierr);
2142ce94432eSBarry Smith   ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)A),&rank);CHKERRQ(ierr);
2143f6d58c54SBarry Smith 
2144f6d58c54SBarry Smith   /* ----------------------------------------------------------------
2145f6d58c54SBarry Smith      Tell every processor the number of nonzeros per row
2146f6d58c54SBarry Smith   */
2147854ce69bSBarry Smith   ierr = PetscMalloc1(A->rmap->N/bs,&lens);CHKERRQ(ierr);
2148f6d58c54SBarry Smith   for (i=A->rmap->rstart/bs; i<A->rmap->rend/bs; i++) {
2149f6d58c54SBarry Smith     lens[i] = ad->i[i-A->rmap->rstart/bs+1] - ad->i[i-A->rmap->rstart/bs] + bd->i[i-A->rmap->rstart/bs+1] - bd->i[i-A->rmap->rstart/bs];
2150f6d58c54SBarry Smith   }
2151785e854fSJed Brown   ierr      = PetscMalloc1(2*size,&recvcounts);CHKERRQ(ierr);
2152f6d58c54SBarry Smith   displs    = recvcounts + size;
2153f6d58c54SBarry Smith   for (i=0; i<size; i++) {
2154f6d58c54SBarry Smith     recvcounts[i] = A->rmap->range[i+1]/bs - A->rmap->range[i]/bs;
2155f6d58c54SBarry Smith     displs[i]     = A->rmap->range[i]/bs;
2156f6d58c54SBarry Smith   }
2157f6d58c54SBarry Smith #if defined(PETSC_HAVE_MPI_IN_PLACE)
2158ce94432eSBarry Smith   ierr = MPI_Allgatherv(MPI_IN_PLACE,0,MPI_DATATYPE_NULL,lens,recvcounts,displs,MPIU_INT,PetscObjectComm((PetscObject)A));CHKERRQ(ierr);
2159f6d58c54SBarry Smith #else
21603d3eaba7SBarry Smith   sendcount = A->rmap->rend/bs - A->rmap->rstart/bs;
2161ce94432eSBarry Smith   ierr = MPI_Allgatherv(lens+A->rmap->rstart/bs,sendcount,MPIU_INT,lens,recvcounts,displs,MPIU_INT,PetscObjectComm((PetscObject)A));CHKERRQ(ierr);
2162f6d58c54SBarry Smith #endif
2163f6d58c54SBarry Smith   /* ---------------------------------------------------------------
2164f6d58c54SBarry Smith      Create the sequential matrix of the same type as the local block diagonal
2165f6d58c54SBarry Smith   */
2166f6d58c54SBarry Smith   ierr = MatCreate(PETSC_COMM_SELF,&B);CHKERRQ(ierr);
2167f6d58c54SBarry Smith   ierr = MatSetSizes(B,A->rmap->N/bs,A->cmap->N/bs,PETSC_DETERMINE,PETSC_DETERMINE);CHKERRQ(ierr);
2168f6d58c54SBarry Smith   ierr = MatSetType(B,MATSEQAIJ);CHKERRQ(ierr);
2169f6d58c54SBarry Smith   ierr = MatSeqAIJSetPreallocation(B,0,lens);CHKERRQ(ierr);
2170f6d58c54SBarry Smith   b    = (Mat_SeqAIJ*)B->data;
2171f6d58c54SBarry Smith 
2172f6d58c54SBarry Smith   /*--------------------------------------------------------------------
2173f6d58c54SBarry Smith     Copy my part of matrix column indices over
2174f6d58c54SBarry Smith   */
2175f6d58c54SBarry Smith   sendcount  = ad->nz + bd->nz;
2176f6d58c54SBarry Smith   jsendbuf   = b->j + b->i[rstarts[rank]/bs];
2177f6d58c54SBarry Smith   a_jsendbuf = ad->j;
2178f6d58c54SBarry Smith   b_jsendbuf = bd->j;
2179f6d58c54SBarry Smith   n          = A->rmap->rend/bs - A->rmap->rstart/bs;
2180f6d58c54SBarry Smith   cnt        = 0;
2181f6d58c54SBarry Smith   for (i=0; i<n; i++) {
2182f6d58c54SBarry Smith 
2183f6d58c54SBarry Smith     /* put in lower diagonal portion */
2184f6d58c54SBarry Smith     m = bd->i[i+1] - bd->i[i];
2185f6d58c54SBarry Smith     while (m > 0) {
2186f6d58c54SBarry Smith       /* is it above diagonal (in bd (compressed) numbering) */
2187f6d58c54SBarry Smith       if (garray[*b_jsendbuf] > A->rmap->rstart/bs + i) break;
2188f6d58c54SBarry Smith       jsendbuf[cnt++] = garray[*b_jsendbuf++];
2189f6d58c54SBarry Smith       m--;
2190f6d58c54SBarry Smith     }
2191f6d58c54SBarry Smith 
2192f6d58c54SBarry Smith     /* put in diagonal portion */
2193f6d58c54SBarry Smith     for (j=ad->i[i]; j<ad->i[i+1]; j++) {
2194f6d58c54SBarry Smith       jsendbuf[cnt++] = A->rmap->rstart/bs + *a_jsendbuf++;
2195f6d58c54SBarry Smith     }
2196f6d58c54SBarry Smith 
2197f6d58c54SBarry Smith     /* put in upper diagonal portion */
2198f6d58c54SBarry Smith     while (m-- > 0) {
2199f6d58c54SBarry Smith       jsendbuf[cnt++] = garray[*b_jsendbuf++];
2200f6d58c54SBarry Smith     }
2201f6d58c54SBarry Smith   }
2202e32f2f54SBarry Smith   if (cnt != sendcount) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Corrupted PETSc matrix: nz given %D actual nz %D",sendcount,cnt);
2203f6d58c54SBarry Smith 
2204f6d58c54SBarry Smith   /*--------------------------------------------------------------------
2205f6d58c54SBarry Smith     Gather all column indices to all processors
2206f6d58c54SBarry Smith   */
2207f6d58c54SBarry Smith   for (i=0; i<size; i++) {
2208f6d58c54SBarry Smith     recvcounts[i] = 0;
2209f6d58c54SBarry Smith     for (j=A->rmap->range[i]/bs; j<A->rmap->range[i+1]/bs; j++) {
2210f6d58c54SBarry Smith       recvcounts[i] += lens[j];
2211f6d58c54SBarry Smith     }
2212f6d58c54SBarry Smith   }
2213f6d58c54SBarry Smith   displs[0] = 0;
2214f6d58c54SBarry Smith   for (i=1; i<size; i++) {
2215f6d58c54SBarry Smith     displs[i] = displs[i-1] + recvcounts[i-1];
2216f6d58c54SBarry Smith   }
2217f6d58c54SBarry Smith #if defined(PETSC_HAVE_MPI_IN_PLACE)
2218ce94432eSBarry Smith   ierr = MPI_Allgatherv(MPI_IN_PLACE,0,MPI_DATATYPE_NULL,b->j,recvcounts,displs,MPIU_INT,PetscObjectComm((PetscObject)A));CHKERRQ(ierr);
2219f6d58c54SBarry Smith #else
2220ce94432eSBarry Smith   ierr = MPI_Allgatherv(jsendbuf,sendcount,MPIU_INT,b->j,recvcounts,displs,MPIU_INT,PetscObjectComm((PetscObject)A));CHKERRQ(ierr);
2221f6d58c54SBarry Smith #endif
2222f6d58c54SBarry Smith   /*--------------------------------------------------------------------
2223f6d58c54SBarry Smith     Assemble the matrix into useable form (note numerical values not yet set)
2224f6d58c54SBarry Smith   */
2225f6d58c54SBarry Smith   /* set the b->ilen (length of each row) values */
2226580bdb30SBarry Smith   ierr = PetscArraycpy(b->ilen,lens,A->rmap->N/bs);CHKERRQ(ierr);
2227f6d58c54SBarry Smith   /* set the b->i indices */
2228f6d58c54SBarry Smith   b->i[0] = 0;
2229f6d58c54SBarry Smith   for (i=1; i<=A->rmap->N/bs; i++) {
2230f6d58c54SBarry Smith     b->i[i] = b->i[i-1] + lens[i-1];
2231f6d58c54SBarry Smith   }
2232f6d58c54SBarry Smith   ierr = PetscFree(lens);CHKERRQ(ierr);
2233f6d58c54SBarry Smith   ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
2234f6d58c54SBarry Smith   ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
2235f6d58c54SBarry Smith   ierr = PetscFree(recvcounts);CHKERRQ(ierr);
2236f6d58c54SBarry Smith 
2237f6d58c54SBarry Smith   if (A->symmetric) {
2238f6d58c54SBarry Smith     ierr = MatSetOption(B,MAT_SYMMETRIC,PETSC_TRUE);CHKERRQ(ierr);
2239f6d58c54SBarry Smith   } else if (A->hermitian) {
2240f6d58c54SBarry Smith     ierr = MatSetOption(B,MAT_HERMITIAN,PETSC_TRUE);CHKERRQ(ierr);
2241f6d58c54SBarry Smith   } else if (A->structurally_symmetric) {
2242f6d58c54SBarry Smith     ierr = MatSetOption(B,MAT_STRUCTURALLY_SYMMETRIC,PETSC_TRUE);CHKERRQ(ierr);
2243f6d58c54SBarry Smith   }
2244f6d58c54SBarry Smith   *newmat = B;
2245f6d58c54SBarry Smith   PetscFunctionReturn(0);
2246f6d58c54SBarry Smith }
2247f6d58c54SBarry Smith 
2248b1a666ecSBarry Smith PetscErrorCode MatSOR_MPIBAIJ(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx)
2249b1a666ecSBarry Smith {
2250b1a666ecSBarry Smith   Mat_MPIBAIJ    *mat = (Mat_MPIBAIJ*)matin->data;
2251b1a666ecSBarry Smith   PetscErrorCode ierr;
2252b1a666ecSBarry Smith   Vec            bb1 = 0;
2253b1a666ecSBarry Smith 
2254b1a666ecSBarry Smith   PetscFunctionBegin;
2255b1a666ecSBarry Smith   if (flag == SOR_APPLY_UPPER) {
2256b1a666ecSBarry Smith     ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr);
2257b1a666ecSBarry Smith     PetscFunctionReturn(0);
2258b1a666ecSBarry Smith   }
2259b1a666ecSBarry Smith 
22604e980039SJed Brown   if (its > 1 || ~flag & SOR_ZERO_INITIAL_GUESS) {
22614e980039SJed Brown     ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr);
22624e980039SJed Brown   }
22634e980039SJed Brown 
2264b1a666ecSBarry Smith   if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP) {
2265b1a666ecSBarry Smith     if (flag & SOR_ZERO_INITIAL_GUESS) {
2266b1a666ecSBarry Smith       ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr);
2267b1a666ecSBarry Smith       its--;
2268b1a666ecSBarry Smith     }
2269b1a666ecSBarry Smith 
2270b1a666ecSBarry Smith     while (its--) {
2271b1a666ecSBarry Smith       ierr = VecScatterBegin(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
2272b1a666ecSBarry Smith       ierr = VecScatterEnd(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
2273b1a666ecSBarry Smith 
2274b1a666ecSBarry Smith       /* update rhs: bb1 = bb - B*x */
2275b1a666ecSBarry Smith       ierr = VecScale(mat->lvec,-1.0);CHKERRQ(ierr);
2276b1a666ecSBarry Smith       ierr = (*mat->B->ops->multadd)(mat->B,mat->lvec,bb,bb1);CHKERRQ(ierr);
2277b1a666ecSBarry Smith 
2278b1a666ecSBarry Smith       /* local sweep */
2279b1a666ecSBarry Smith       ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,1,xx);CHKERRQ(ierr);
2280b1a666ecSBarry Smith     }
2281b1a666ecSBarry Smith   } else if (flag & SOR_LOCAL_FORWARD_SWEEP) {
2282b1a666ecSBarry Smith     if (flag & SOR_ZERO_INITIAL_GUESS) {
2283b1a666ecSBarry Smith       ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr);
2284b1a666ecSBarry Smith       its--;
2285b1a666ecSBarry Smith     }
2286b1a666ecSBarry Smith     while (its--) {
2287b1a666ecSBarry Smith       ierr = VecScatterBegin(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
2288b1a666ecSBarry Smith       ierr = VecScatterEnd(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
2289b1a666ecSBarry Smith 
2290b1a666ecSBarry Smith       /* update rhs: bb1 = bb - B*x */
2291b1a666ecSBarry Smith       ierr = VecScale(mat->lvec,-1.0);CHKERRQ(ierr);
2292b1a666ecSBarry Smith       ierr = (*mat->B->ops->multadd)(mat->B,mat->lvec,bb,bb1);CHKERRQ(ierr);
2293b1a666ecSBarry Smith 
2294b1a666ecSBarry Smith       /* local sweep */
2295b1a666ecSBarry Smith       ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_FORWARD_SWEEP,fshift,lits,1,xx);CHKERRQ(ierr);
2296b1a666ecSBarry Smith     }
2297b1a666ecSBarry Smith   } else if (flag & SOR_LOCAL_BACKWARD_SWEEP) {
2298b1a666ecSBarry Smith     if (flag & SOR_ZERO_INITIAL_GUESS) {
2299b1a666ecSBarry Smith       ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr);
2300b1a666ecSBarry Smith       its--;
2301b1a666ecSBarry Smith     }
2302b1a666ecSBarry Smith     while (its--) {
2303b1a666ecSBarry Smith       ierr = VecScatterBegin(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
2304b1a666ecSBarry Smith       ierr = VecScatterEnd(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
2305b1a666ecSBarry Smith 
2306b1a666ecSBarry Smith       /* update rhs: bb1 = bb - B*x */
2307b1a666ecSBarry Smith       ierr = VecScale(mat->lvec,-1.0);CHKERRQ(ierr);
2308b1a666ecSBarry Smith       ierr = (*mat->B->ops->multadd)(mat->B,mat->lvec,bb,bb1);CHKERRQ(ierr);
2309b1a666ecSBarry Smith 
2310b1a666ecSBarry Smith       /* local sweep */
2311b1a666ecSBarry Smith       ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_BACKWARD_SWEEP,fshift,lits,1,xx);CHKERRQ(ierr);
2312b1a666ecSBarry Smith     }
2313ce94432eSBarry Smith   } else SETERRQ(PetscObjectComm((PetscObject)matin),PETSC_ERR_SUP,"Parallel version of SOR requested not supported");
2314b1a666ecSBarry Smith 
23156bf464f9SBarry Smith   ierr = VecDestroy(&bb1);CHKERRQ(ierr);
2316b1a666ecSBarry Smith   PetscFunctionReturn(0);
2317b1a666ecSBarry Smith }
2318b1a666ecSBarry Smith 
231947f7623dSRémi Lacroix PetscErrorCode MatGetColumnNorms_MPIBAIJ(Mat A,NormType type,PetscReal *norms)
232047f7623dSRémi Lacroix {
232147f7623dSRémi Lacroix   PetscErrorCode ierr;
232247f7623dSRémi Lacroix   Mat_MPIBAIJ    *aij = (Mat_MPIBAIJ*)A->data;
232347f7623dSRémi Lacroix   PetscInt       N,i,*garray = aij->garray;
232447f7623dSRémi Lacroix   PetscInt       ib,jb,bs = A->rmap->bs;
232547f7623dSRémi Lacroix   Mat_SeqBAIJ    *a_aij = (Mat_SeqBAIJ*) aij->A->data;
232647f7623dSRémi Lacroix   MatScalar      *a_val = a_aij->a;
232747f7623dSRémi Lacroix   Mat_SeqBAIJ    *b_aij = (Mat_SeqBAIJ*) aij->B->data;
232847f7623dSRémi Lacroix   MatScalar      *b_val = b_aij->a;
232947f7623dSRémi Lacroix   PetscReal      *work;
233047f7623dSRémi Lacroix 
233147f7623dSRémi Lacroix   PetscFunctionBegin;
233247f7623dSRémi Lacroix   ierr = MatGetSize(A,NULL,&N);CHKERRQ(ierr);
23331795a4d1SJed Brown   ierr = PetscCalloc1(N,&work);CHKERRQ(ierr);
233447f7623dSRémi Lacroix   if (type == NORM_2) {
233547f7623dSRémi Lacroix     for (i=a_aij->i[0]; i<a_aij->i[aij->A->rmap->n/bs]; i++) {
233647f7623dSRémi Lacroix       for (jb=0; jb<bs; jb++) {
233747f7623dSRémi Lacroix         for (ib=0; ib<bs; ib++) {
233847f7623dSRémi Lacroix           work[A->cmap->rstart + a_aij->j[i] * bs + jb] += PetscAbsScalar(*a_val * *a_val);
233947f7623dSRémi Lacroix           a_val++;
234047f7623dSRémi Lacroix         }
234147f7623dSRémi Lacroix       }
234247f7623dSRémi Lacroix     }
234347f7623dSRémi Lacroix     for (i=b_aij->i[0]; i<b_aij->i[aij->B->rmap->n/bs]; i++) {
234447f7623dSRémi Lacroix       for (jb=0; jb<bs; jb++) {
234547f7623dSRémi Lacroix         for (ib=0; ib<bs; ib++) {
234647f7623dSRémi Lacroix           work[garray[b_aij->j[i]] * bs + jb] += PetscAbsScalar(*b_val * *b_val);
234747f7623dSRémi Lacroix           b_val++;
234847f7623dSRémi Lacroix         }
234947f7623dSRémi Lacroix       }
235047f7623dSRémi Lacroix     }
235147f7623dSRémi Lacroix   } else if (type == NORM_1) {
235247f7623dSRémi Lacroix     for (i=a_aij->i[0]; i<a_aij->i[aij->A->rmap->n/bs]; i++) {
235347f7623dSRémi Lacroix       for (jb=0; jb<bs; jb++) {
235447f7623dSRémi Lacroix         for (ib=0; ib<bs; ib++) {
235547f7623dSRémi Lacroix           work[A->cmap->rstart + a_aij->j[i] * bs + jb] += PetscAbsScalar(*a_val);
235647f7623dSRémi Lacroix           a_val++;
235747f7623dSRémi Lacroix         }
235847f7623dSRémi Lacroix       }
235947f7623dSRémi Lacroix     }
236047f7623dSRémi Lacroix     for (i=b_aij->i[0]; i<b_aij->i[aij->B->rmap->n/bs]; i++) {
236147f7623dSRémi Lacroix       for (jb=0; jb<bs; jb++) {
236247f7623dSRémi Lacroix        for (ib=0; ib<bs; ib++) {
236347f7623dSRémi Lacroix           work[garray[b_aij->j[i]] * bs + jb] += PetscAbsScalar(*b_val);
236447f7623dSRémi Lacroix           b_val++;
236547f7623dSRémi Lacroix         }
236647f7623dSRémi Lacroix       }
236747f7623dSRémi Lacroix     }
236847f7623dSRémi Lacroix   } else if (type == NORM_INFINITY) {
236947f7623dSRémi Lacroix     for (i=a_aij->i[0]; i<a_aij->i[aij->A->rmap->n/bs]; i++) {
237047f7623dSRémi Lacroix       for (jb=0; jb<bs; jb++) {
237147f7623dSRémi Lacroix         for (ib=0; ib<bs; ib++) {
237247f7623dSRémi Lacroix           int col = A->cmap->rstart + a_aij->j[i] * bs + jb;
237347f7623dSRémi Lacroix           work[col] = PetscMax(PetscAbsScalar(*a_val), work[col]);
237447f7623dSRémi Lacroix           a_val++;
237547f7623dSRémi Lacroix         }
237647f7623dSRémi Lacroix       }
237747f7623dSRémi Lacroix     }
237847f7623dSRémi Lacroix     for (i=b_aij->i[0]; i<b_aij->i[aij->B->rmap->n/bs]; i++) {
237947f7623dSRémi Lacroix       for (jb=0; jb<bs; jb++) {
238047f7623dSRémi Lacroix         for (ib=0; ib<bs; ib++) {
238147f7623dSRémi Lacroix           int col = garray[b_aij->j[i]] * bs + jb;
238247f7623dSRémi Lacroix           work[col] = PetscMax(PetscAbsScalar(*b_val), work[col]);
238347f7623dSRémi Lacroix           b_val++;
238447f7623dSRémi Lacroix         }
238547f7623dSRémi Lacroix       }
238647f7623dSRémi Lacroix     }
238747f7623dSRémi Lacroix   } else SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ARG_WRONG,"Unknown NormType");
238847f7623dSRémi Lacroix   if (type == NORM_INFINITY) {
2389b2566f29SBarry Smith     ierr = MPIU_Allreduce(work,norms,N,MPIU_REAL,MPIU_MAX,PetscObjectComm((PetscObject)A));CHKERRQ(ierr);
239047f7623dSRémi Lacroix   } else {
2391b2566f29SBarry Smith     ierr = MPIU_Allreduce(work,norms,N,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)A));CHKERRQ(ierr);
239247f7623dSRémi Lacroix   }
239347f7623dSRémi Lacroix   ierr = PetscFree(work);CHKERRQ(ierr);
239447f7623dSRémi Lacroix   if (type == NORM_2) {
239547f7623dSRémi Lacroix     for (i=0; i<N; i++) norms[i] = PetscSqrtReal(norms[i]);
239647f7623dSRémi Lacroix   }
239747f7623dSRémi Lacroix   PetscFunctionReturn(0);
239847f7623dSRémi Lacroix }
239947f7623dSRémi Lacroix 
2400713ccfa9SJed Brown PetscErrorCode MatInvertBlockDiagonal_MPIBAIJ(Mat A,const PetscScalar **values)
2401bbead8a2SBarry Smith {
2402bbead8a2SBarry Smith   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*) A->data;
2403bbead8a2SBarry Smith   PetscErrorCode ierr;
2404bbead8a2SBarry Smith 
2405bbead8a2SBarry Smith   PetscFunctionBegin;
2406bbead8a2SBarry Smith   ierr = MatInvertBlockDiagonal(a->A,values);CHKERRQ(ierr);
24077b6c816cSBarry Smith   A->factorerrortype             = a->A->factorerrortype;
24087b6c816cSBarry Smith   A->factorerror_zeropivot_value = a->A->factorerror_zeropivot_value;
24097b6c816cSBarry Smith   A->factorerror_zeropivot_row   = a->A->factorerror_zeropivot_row;
2410bbead8a2SBarry Smith   PetscFunctionReturn(0);
2411bbead8a2SBarry Smith }
2412bbead8a2SBarry Smith 
24137d68702bSBarry Smith PetscErrorCode MatShift_MPIBAIJ(Mat Y,PetscScalar a)
24147d68702bSBarry Smith {
24157d68702bSBarry Smith   PetscErrorCode ierr;
24167d68702bSBarry Smith   Mat_MPIBAIJ    *maij = (Mat_MPIBAIJ*)Y->data;
24176f33a894SBarry Smith   Mat_SeqBAIJ    *aij = (Mat_SeqBAIJ*)maij->A->data;
24187d68702bSBarry Smith 
24197d68702bSBarry Smith   PetscFunctionBegin;
24206f33a894SBarry Smith   if (!Y->preallocated) {
24217d68702bSBarry Smith     ierr = MatMPIBAIJSetPreallocation(Y,Y->rmap->bs,1,NULL,0,NULL);CHKERRQ(ierr);
24226f33a894SBarry Smith   } else if (!aij->nz) {
2423b83222d8SBarry Smith     PetscInt nonew = aij->nonew;
24246f33a894SBarry Smith     ierr = MatSeqBAIJSetPreallocation(maij->A,Y->rmap->bs,1,NULL);CHKERRQ(ierr);
2425b83222d8SBarry Smith     aij->nonew = nonew;
24267d68702bSBarry Smith   }
24277d68702bSBarry Smith   ierr = MatShift_Basic(Y,a);CHKERRQ(ierr);
24287d68702bSBarry Smith   PetscFunctionReturn(0);
24297d68702bSBarry Smith }
24308c7482ecSBarry Smith 
24313b49f96aSBarry Smith PetscErrorCode MatMissingDiagonal_MPIBAIJ(Mat A,PetscBool  *missing,PetscInt *d)
24323b49f96aSBarry Smith {
24333b49f96aSBarry Smith   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)A->data;
24343b49f96aSBarry Smith   PetscErrorCode ierr;
24353b49f96aSBarry Smith 
24363b49f96aSBarry Smith   PetscFunctionBegin;
24373b49f96aSBarry Smith   if (A->rmap->n != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only works for square matrices");
24383b49f96aSBarry Smith   ierr = MatMissingDiagonal(a->A,missing,d);CHKERRQ(ierr);
24393b49f96aSBarry Smith   if (d) {
24403b49f96aSBarry Smith     PetscInt rstart;
24413b49f96aSBarry Smith     ierr = MatGetOwnershipRange(A,&rstart,NULL);CHKERRQ(ierr);
24423b49f96aSBarry Smith     *d += rstart/A->rmap->bs;
24433b49f96aSBarry Smith 
24443b49f96aSBarry Smith   }
24453b49f96aSBarry Smith   PetscFunctionReturn(0);
24463b49f96aSBarry Smith }
24473b49f96aSBarry Smith 
2448a5b7ff6bSBarry Smith PetscErrorCode  MatGetDiagonalBlock_MPIBAIJ(Mat A,Mat *a)
2449a5b7ff6bSBarry Smith {
2450a5b7ff6bSBarry Smith   PetscFunctionBegin;
2451a5b7ff6bSBarry Smith   *a = ((Mat_MPIBAIJ*)A->data)->A;
2452a5b7ff6bSBarry Smith   PetscFunctionReturn(0);
2453a5b7ff6bSBarry Smith }
2454a5b7ff6bSBarry Smith 
245579bdfe76SSatish Balay /* -------------------------------------------------------------------*/
24563964eb88SJed Brown static struct _MatOps MatOps_Values = {MatSetValues_MPIBAIJ,
2457cc2dc46cSBarry Smith                                        MatGetRow_MPIBAIJ,
2458cc2dc46cSBarry Smith                                        MatRestoreRow_MPIBAIJ,
2459cc2dc46cSBarry Smith                                        MatMult_MPIBAIJ,
246097304618SKris Buschelman                                 /* 4*/ MatMultAdd_MPIBAIJ,
24617c922b88SBarry Smith                                        MatMultTranspose_MPIBAIJ,
24627c922b88SBarry Smith                                        MatMultTransposeAdd_MPIBAIJ,
2463cc2dc46cSBarry Smith                                        0,
2464cc2dc46cSBarry Smith                                        0,
2465cc2dc46cSBarry Smith                                        0,
246697304618SKris Buschelman                                 /*10*/ 0,
2467cc2dc46cSBarry Smith                                        0,
2468cc2dc46cSBarry Smith                                        0,
2469b1a666ecSBarry Smith                                        MatSOR_MPIBAIJ,
2470cc2dc46cSBarry Smith                                        MatTranspose_MPIBAIJ,
247197304618SKris Buschelman                                 /*15*/ MatGetInfo_MPIBAIJ,
24727fc3c18eSBarry Smith                                        MatEqual_MPIBAIJ,
2473cc2dc46cSBarry Smith                                        MatGetDiagonal_MPIBAIJ,
2474cc2dc46cSBarry Smith                                        MatDiagonalScale_MPIBAIJ,
2475cc2dc46cSBarry Smith                                        MatNorm_MPIBAIJ,
247697304618SKris Buschelman                                 /*20*/ MatAssemblyBegin_MPIBAIJ,
2477cc2dc46cSBarry Smith                                        MatAssemblyEnd_MPIBAIJ,
2478cc2dc46cSBarry Smith                                        MatSetOption_MPIBAIJ,
2479cc2dc46cSBarry Smith                                        MatZeroEntries_MPIBAIJ,
2480d519adbfSMatthew Knepley                                 /*24*/ MatZeroRows_MPIBAIJ,
2481cc2dc46cSBarry Smith                                        0,
2482cc2dc46cSBarry Smith                                        0,
2483cc2dc46cSBarry Smith                                        0,
2484cc2dc46cSBarry Smith                                        0,
24854994cf47SJed Brown                                 /*29*/ MatSetUp_MPIBAIJ,
2486273d9f13SBarry Smith                                        0,
2487cc2dc46cSBarry Smith                                        0,
2488a5b7ff6bSBarry Smith                                        MatGetDiagonalBlock_MPIBAIJ,
2489cc2dc46cSBarry Smith                                        0,
2490d519adbfSMatthew Knepley                                 /*34*/ MatDuplicate_MPIBAIJ,
2491cc2dc46cSBarry Smith                                        0,
2492cc2dc46cSBarry Smith                                        0,
2493cc2dc46cSBarry Smith                                        0,
2494cc2dc46cSBarry Smith                                        0,
2495d519adbfSMatthew Knepley                                 /*39*/ MatAXPY_MPIBAIJ,
24967dae84e0SHong Zhang                                        MatCreateSubMatrices_MPIBAIJ,
2497cc2dc46cSBarry Smith                                        MatIncreaseOverlap_MPIBAIJ,
2498cc2dc46cSBarry Smith                                        MatGetValues_MPIBAIJ,
24993c896bc6SHong Zhang                                        MatCopy_MPIBAIJ,
2500d519adbfSMatthew Knepley                                 /*44*/ 0,
2501cc2dc46cSBarry Smith                                        MatScale_MPIBAIJ,
25027d68702bSBarry Smith                                        MatShift_MPIBAIJ,
2503cc2dc46cSBarry Smith                                        0,
25046f0a72daSMatthew G. Knepley                                        MatZeroRowsColumns_MPIBAIJ,
2505f73d5cc4SBarry Smith                                 /*49*/ 0,
2506cc2dc46cSBarry Smith                                        0,
2507cc2dc46cSBarry Smith                                        0,
2508cc2dc46cSBarry Smith                                        0,
2509cc2dc46cSBarry Smith                                        0,
251093dfae19SHong Zhang                                 /*54*/ MatFDColoringCreate_MPIXAIJ,
2511cc2dc46cSBarry Smith                                        0,
2512cc2dc46cSBarry Smith                                        MatSetUnfactored_MPIBAIJ,
251382094794SBarry Smith                                        MatPermute_MPIBAIJ,
2514cc2dc46cSBarry Smith                                        MatSetValuesBlocked_MPIBAIJ,
25157dae84e0SHong Zhang                                 /*59*/ MatCreateSubMatrix_MPIBAIJ,
2516f14a1c24SBarry Smith                                        MatDestroy_MPIBAIJ,
2517f14a1c24SBarry Smith                                        MatView_MPIBAIJ,
2518357abbc8SBarry Smith                                        0,
25197843d17aSBarry Smith                                        0,
2520d519adbfSMatthew Knepley                                 /*64*/ 0,
25217843d17aSBarry Smith                                        0,
25227843d17aSBarry Smith                                        0,
25237843d17aSBarry Smith                                        0,
25247843d17aSBarry Smith                                        0,
2525d519adbfSMatthew Knepley                                 /*69*/ MatGetRowMaxAbs_MPIBAIJ,
25267843d17aSBarry Smith                                        0,
252797304618SKris Buschelman                                        0,
252897304618SKris Buschelman                                        0,
252997304618SKris Buschelman                                        0,
2530d519adbfSMatthew Knepley                                 /*74*/ 0,
2531f6d58c54SBarry Smith                                        MatFDColoringApply_BAIJ,
253297304618SKris Buschelman                                        0,
253397304618SKris Buschelman                                        0,
253497304618SKris Buschelman                                        0,
2535d519adbfSMatthew Knepley                                 /*79*/ 0,
253697304618SKris Buschelman                                        0,
253797304618SKris Buschelman                                        0,
253897304618SKris Buschelman                                        0,
25395bba2384SShri Abhyankar                                        MatLoad_MPIBAIJ,
2540d519adbfSMatthew Knepley                                 /*84*/ 0,
2541865e5f61SKris Buschelman                                        0,
2542865e5f61SKris Buschelman                                        0,
2543865e5f61SKris Buschelman                                        0,
2544865e5f61SKris Buschelman                                        0,
2545d519adbfSMatthew Knepley                                 /*89*/ 0,
2546865e5f61SKris Buschelman                                        0,
2547865e5f61SKris Buschelman                                        0,
2548865e5f61SKris Buschelman                                        0,
2549865e5f61SKris Buschelman                                        0,
2550d519adbfSMatthew Knepley                                 /*94*/ 0,
2551865e5f61SKris Buschelman                                        0,
2552865e5f61SKris Buschelman                                        0,
255399cafbc1SBarry Smith                                        0,
255499cafbc1SBarry Smith                                        0,
2555d519adbfSMatthew Knepley                                 /*99*/ 0,
255699cafbc1SBarry Smith                                        0,
255799cafbc1SBarry Smith                                        0,
255899cafbc1SBarry Smith                                        0,
255999cafbc1SBarry Smith                                        0,
2560d519adbfSMatthew Knepley                                 /*104*/0,
256199cafbc1SBarry Smith                                        MatRealPart_MPIBAIJ,
25628c7482ecSBarry Smith                                        MatImaginaryPart_MPIBAIJ,
25638c7482ecSBarry Smith                                        0,
25648c7482ecSBarry Smith                                        0,
2565d519adbfSMatthew Knepley                                 /*109*/0,
25668c7482ecSBarry Smith                                        0,
25678c7482ecSBarry Smith                                        0,
25688c7482ecSBarry Smith                                        0,
25693b49f96aSBarry Smith                                        MatMissingDiagonal_MPIBAIJ,
2570d1adec66SJed Brown                                 /*114*/MatGetSeqNonzeroStructure_MPIBAIJ,
25718c7482ecSBarry Smith                                        0,
25724683f7a4SShri Abhyankar                                        MatGetGhosts_MPIBAIJ,
25734683f7a4SShri Abhyankar                                        0,
25744683f7a4SShri Abhyankar                                        0,
25754683f7a4SShri Abhyankar                                 /*119*/0,
25764683f7a4SShri Abhyankar                                        0,
25774683f7a4SShri Abhyankar                                        0,
2578bbead8a2SBarry Smith                                        0,
2579e8271787SHong Zhang                                        MatGetMultiProcBlock_MPIBAIJ,
2580bbead8a2SBarry Smith                                 /*124*/0,
258147f7623dSRémi Lacroix                                        MatGetColumnNorms_MPIBAIJ,
25823964eb88SJed Brown                                        MatInvertBlockDiagonal_MPIBAIJ,
25833964eb88SJed Brown                                        0,
25843964eb88SJed Brown                                        0,
25853964eb88SJed Brown                                /*129*/ 0,
25863964eb88SJed Brown                                        0,
25873964eb88SJed Brown                                        0,
25883964eb88SJed Brown                                        0,
25893964eb88SJed Brown                                        0,
25903964eb88SJed Brown                                /*134*/ 0,
25913964eb88SJed Brown                                        0,
25923964eb88SJed Brown                                        0,
25933964eb88SJed Brown                                        0,
25943964eb88SJed Brown                                        0,
259546533700Sstefano_zampini                                /*139*/ MatSetBlockSizes_Default,
2596f9426fe0SMark Adams                                        0,
25971919a2e2SJed Brown                                        0,
2598bdf6f3fcSHong Zhang                                        MatFDColoringSetUp_MPIXAIJ,
2599bdf6f3fcSHong Zhang                                        0,
2600bdf6f3fcSHong Zhang                                 /*144*/MatCreateMPIMatConcatenateSeqMat_MPIBAIJ
26018c7482ecSBarry Smith };
260279bdfe76SSatish Balay 
260379bdfe76SSatish Balay 
2604cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIBAIJ_MPISBAIJ(Mat,MatType,MatReuse,Mat*);
2605c9225affSStefano Zampini PETSC_INTERN PetscErrorCode MatConvert_XAIJ_IS(Mat,MatType,MatReuse,Mat*);
2606d94109b8SHong Zhang 
2607cf12db73SBarry Smith PetscErrorCode MatMPIBAIJSetPreallocationCSR_MPIBAIJ(Mat B,PetscInt bs,const PetscInt ii[],const PetscInt jj[],const PetscScalar V[])
2608aac34f13SBarry Smith {
2609b8d659d7SLisandro Dalcin   PetscInt       m,rstart,cstart,cend;
261037cd3c0dSBarry Smith   PetscInt       i,j,dlen,olen,nz,nz_max=0,*d_nnz=0,*o_nnz=0;
2611b8d659d7SLisandro Dalcin   const PetscInt *JJ    =0;
2612b8d659d7SLisandro Dalcin   PetscScalar    *values=0;
2613d47bf9aaSJed Brown   PetscBool      roworiented = ((Mat_MPIBAIJ*)B->data)->roworiented;
2614aac34f13SBarry Smith   PetscErrorCode ierr;
26153bd0feecSPierre Jolivet   PetscBool      nooffprocentries;
2616aac34f13SBarry Smith 
2617aac34f13SBarry Smith   PetscFunctionBegin;
261826283091SBarry Smith   ierr   = PetscLayoutSetBlockSize(B->rmap,bs);CHKERRQ(ierr);
261926283091SBarry Smith   ierr   = PetscLayoutSetBlockSize(B->cmap,bs);CHKERRQ(ierr);
262026283091SBarry Smith   ierr   = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr);
262126283091SBarry Smith   ierr   = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr);
2622e02043d6SBarry Smith   ierr   = PetscLayoutGetBlockSize(B->rmap,&bs);CHKERRQ(ierr);
2623d0f46423SBarry Smith   m      = B->rmap->n/bs;
2624d0f46423SBarry Smith   rstart = B->rmap->rstart/bs;
2625d0f46423SBarry Smith   cstart = B->cmap->rstart/bs;
2626d0f46423SBarry Smith   cend   = B->cmap->rend/bs;
2627b8d659d7SLisandro Dalcin 
2628e32f2f54SBarry Smith   if (ii[0]) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"ii[0] must be 0 but it is %D",ii[0]);
2629dcca6d9dSJed Brown   ierr = PetscMalloc2(m,&d_nnz,m,&o_nnz);CHKERRQ(ierr);
2630aac34f13SBarry Smith   for (i=0; i<m; i++) {
2631cf12db73SBarry Smith     nz = ii[i+1] - ii[i];
2632e32f2f54SBarry Smith     if (nz < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Local row %D has a negative number of columns %D",i,nz);
2633b8d659d7SLisandro Dalcin     nz_max = PetscMax(nz_max,nz);
263437cd3c0dSBarry Smith     dlen   = 0;
263537cd3c0dSBarry Smith     olen   = 0;
2636cf12db73SBarry Smith     JJ     = jj + ii[i];
2637b8d659d7SLisandro Dalcin     for (j=0; j<nz; j++) {
263837cd3c0dSBarry Smith       if (*JJ < cstart || *JJ >= cend) olen++;
263937cd3c0dSBarry Smith       else dlen++;
2640aac34f13SBarry Smith       JJ++;
2641aac34f13SBarry Smith     }
264237cd3c0dSBarry Smith     d_nnz[i] = dlen;
264337cd3c0dSBarry Smith     o_nnz[i] = olen;
2644aac34f13SBarry Smith   }
2645aac34f13SBarry Smith   ierr = MatMPIBAIJSetPreallocation(B,bs,0,d_nnz,0,o_nnz);CHKERRQ(ierr);
2646fca92195SBarry Smith   ierr = PetscFree2(d_nnz,o_nnz);CHKERRQ(ierr);
2647aac34f13SBarry Smith 
2648b8d659d7SLisandro Dalcin   values = (PetscScalar*)V;
2649b8d659d7SLisandro Dalcin   if (!values) {
265037cd3c0dSBarry Smith     ierr = PetscCalloc1(bs*bs*nz_max,&values);CHKERRQ(ierr);
2651b8d659d7SLisandro Dalcin   }
2652b8d659d7SLisandro Dalcin   for (i=0; i<m; i++) {
2653b8d659d7SLisandro Dalcin     PetscInt          row    = i + rstart;
2654cf12db73SBarry Smith     PetscInt          ncols  = ii[i+1] - ii[i];
2655cf12db73SBarry Smith     const PetscInt    *icols = jj + ii[i];
2656bb80cfbbSStefano Zampini     if (bs == 1 || !roworiented) {         /* block ordering matches the non-nested layout of MatSetValues so we can insert entire rows */
2657cf12db73SBarry Smith       const PetscScalar *svals = values + (V ? (bs*bs*ii[i]) : 0);
2658b8d659d7SLisandro Dalcin       ierr = MatSetValuesBlocked_MPIBAIJ(B,1,&row,ncols,icols,svals,INSERT_VALUES);CHKERRQ(ierr);
26593adadaf3SJed Brown     } else {                    /* block ordering does not match so we can only insert one block at a time. */
26603adadaf3SJed Brown       PetscInt j;
26613adadaf3SJed Brown       for (j=0; j<ncols; j++) {
26623adadaf3SJed Brown         const PetscScalar *svals = values + (V ? (bs*bs*(ii[i]+j)) : 0);
26633adadaf3SJed Brown         ierr = MatSetValuesBlocked_MPIBAIJ(B,1,&row,1,&icols[j],svals,INSERT_VALUES);CHKERRQ(ierr);
26643adadaf3SJed Brown       }
26653adadaf3SJed Brown     }
2666aac34f13SBarry Smith   }
2667aac34f13SBarry Smith 
2668b8d659d7SLisandro Dalcin   if (!V) { ierr = PetscFree(values);CHKERRQ(ierr); }
26693bd0feecSPierre Jolivet   nooffprocentries    = B->nooffprocentries;
26703bd0feecSPierre Jolivet   B->nooffprocentries = PETSC_TRUE;
2671aac34f13SBarry Smith   ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
2672aac34f13SBarry Smith   ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
26733bd0feecSPierre Jolivet   B->nooffprocentries = nooffprocentries;
26743bd0feecSPierre Jolivet 
26757827cd58SJed Brown   ierr = MatSetOption(B,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_TRUE);CHKERRQ(ierr);
2676aac34f13SBarry Smith   PetscFunctionReturn(0);
2677aac34f13SBarry Smith }
2678aac34f13SBarry Smith 
2679aac34f13SBarry Smith /*@C
2680664954b6SBarry Smith    MatMPIBAIJSetPreallocationCSR - Creates a sparse parallel matrix in BAIJ format using the given nonzero structure and (optional) numerical values
2681aac34f13SBarry Smith 
2682d083f849SBarry Smith    Collective
2683aac34f13SBarry Smith 
2684aac34f13SBarry Smith    Input Parameters:
26851c4f3114SJed Brown +  B - the matrix
2686dfb205c3SBarry Smith .  bs - the block size
2687aac34f13SBarry Smith .  i - the indices into j for the start of each local row (starts with zero)
2688aac34f13SBarry Smith .  j - the column indices for each local row (starts with zero) these must be sorted for each row
2689aac34f13SBarry Smith -  v - optional values in the matrix
2690aac34f13SBarry Smith 
2691664954b6SBarry Smith    Level: advanced
2692aac34f13SBarry Smith 
269395452b02SPatrick Sanan    Notes:
269495452b02SPatrick Sanan     The order of the entries in values is specified by the MatOption MAT_ROW_ORIENTED.  For example, C programs
26953adadaf3SJed Brown    may want to use the default MAT_ROW_ORIENTED=PETSC_TRUE and use an array v[nnz][bs][bs] where the second index is
26963adadaf3SJed Brown    over rows within a block and the last index is over columns within a block row.  Fortran programs will likely set
26973adadaf3SJed Brown    MAT_ROW_ORIENTED=PETSC_FALSE and use a Fortran array v(bs,bs,nnz) in which the first index is over rows within a
26983adadaf3SJed Brown    block column and the second index is over columns within a block.
26993adadaf3SJed Brown 
2700664954b6SBarry Smith    Though this routine has Preallocation() in the name it also sets the exact nonzero locations of the matrix entries and usually the numerical values as well
2701664954b6SBarry Smith 
27023adadaf3SJed Brown .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatMPIBAIJSetPreallocation(), MatCreateAIJ(), MPIAIJ, MatCreateMPIBAIJWithArrays(), MPIBAIJ
2703aac34f13SBarry Smith @*/
27047087cfbeSBarry Smith PetscErrorCode  MatMPIBAIJSetPreallocationCSR(Mat B,PetscInt bs,const PetscInt i[],const PetscInt j[], const PetscScalar v[])
2705aac34f13SBarry Smith {
27064ac538c5SBarry Smith   PetscErrorCode ierr;
2707aac34f13SBarry Smith 
2708aac34f13SBarry Smith   PetscFunctionBegin;
27096ba663aaSJed Brown   PetscValidHeaderSpecific(B,MAT_CLASSID,1);
27106ba663aaSJed Brown   PetscValidType(B,1);
27116ba663aaSJed Brown   PetscValidLogicalCollectiveInt(B,bs,2);
27124ac538c5SBarry Smith   ierr = PetscTryMethod(B,"MatMPIBAIJSetPreallocationCSR_C",(Mat,PetscInt,const PetscInt[],const PetscInt[],const PetscScalar[]),(B,bs,i,j,v));CHKERRQ(ierr);
2713aac34f13SBarry Smith   PetscFunctionReturn(0);
2714aac34f13SBarry Smith }
2715aac34f13SBarry Smith 
2716b2573a8aSBarry Smith PetscErrorCode  MatMPIBAIJSetPreallocation_MPIBAIJ(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt *d_nnz,PetscInt o_nz,const PetscInt *o_nnz)
2717a23d5eceSKris Buschelman {
2718a23d5eceSKris Buschelman   Mat_MPIBAIJ    *b;
2719dfbe8321SBarry Smith   PetscErrorCode ierr;
2720535b19f3SBarry Smith   PetscInt       i;
27215d2a9ed1SStefano Zampini   PetscMPIInt    size;
2722a23d5eceSKris Buschelman 
2723a23d5eceSKris Buschelman   PetscFunctionBegin;
272433d57670SJed Brown   ierr = MatSetBlockSize(B,PetscAbs(bs));CHKERRQ(ierr);
272526283091SBarry Smith   ierr = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr);
272626283091SBarry Smith   ierr = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr);
2727e02043d6SBarry Smith   ierr = PetscLayoutGetBlockSize(B->rmap,&bs);CHKERRQ(ierr);
2728899cda47SBarry Smith 
2729a23d5eceSKris Buschelman   if (d_nnz) {
2730d0f46423SBarry Smith     for (i=0; i<B->rmap->n/bs; i++) {
2731e32f2f54SBarry Smith       if (d_nnz[i] < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"d_nnz cannot be less than -1: local row %D value %D",i,d_nnz[i]);
2732a23d5eceSKris Buschelman     }
2733a23d5eceSKris Buschelman   }
2734a23d5eceSKris Buschelman   if (o_nnz) {
2735d0f46423SBarry Smith     for (i=0; i<B->rmap->n/bs; i++) {
2736e32f2f54SBarry Smith       if (o_nnz[i] < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"o_nnz cannot be less than -1: local row %D value %D",i,o_nnz[i]);
2737a23d5eceSKris Buschelman     }
2738a23d5eceSKris Buschelman   }
2739a23d5eceSKris Buschelman 
2740a23d5eceSKris Buschelman   b      = (Mat_MPIBAIJ*)B->data;
2741a23d5eceSKris Buschelman   b->bs2 = bs*bs;
2742d0f46423SBarry Smith   b->mbs = B->rmap->n/bs;
2743d0f46423SBarry Smith   b->nbs = B->cmap->n/bs;
2744d0f46423SBarry Smith   b->Mbs = B->rmap->N/bs;
2745d0f46423SBarry Smith   b->Nbs = B->cmap->N/bs;
2746a23d5eceSKris Buschelman 
2747a23d5eceSKris Buschelman   for (i=0; i<=b->size; i++) {
2748d0f46423SBarry Smith     b->rangebs[i] = B->rmap->range[i]/bs;
2749a23d5eceSKris Buschelman   }
2750d0f46423SBarry Smith   b->rstartbs = B->rmap->rstart/bs;
2751d0f46423SBarry Smith   b->rendbs   = B->rmap->rend/bs;
2752d0f46423SBarry Smith   b->cstartbs = B->cmap->rstart/bs;
2753d0f46423SBarry Smith   b->cendbs   = B->cmap->rend/bs;
2754a23d5eceSKris Buschelman 
2755cb7b82ddSBarry Smith #if defined(PETSC_USE_CTABLE)
2756cb7b82ddSBarry Smith   ierr = PetscTableDestroy(&b->colmap);CHKERRQ(ierr);
2757cb7b82ddSBarry Smith #else
2758cb7b82ddSBarry Smith   ierr = PetscFree(b->colmap);CHKERRQ(ierr);
2759cb7b82ddSBarry Smith #endif
2760cb7b82ddSBarry Smith   ierr = PetscFree(b->garray);CHKERRQ(ierr);
2761cb7b82ddSBarry Smith   ierr = VecDestroy(&b->lvec);CHKERRQ(ierr);
2762cb7b82ddSBarry Smith   ierr = VecScatterDestroy(&b->Mvctx);CHKERRQ(ierr);
2763cb7b82ddSBarry Smith 
2764cb7b82ddSBarry Smith   /* Because the B will have been resized we simply destroy it and create a new one each time */
27655d2a9ed1SStefano Zampini   ierr = MPI_Comm_size(PetscObjectComm((PetscObject)B),&size);CHKERRQ(ierr);
2766cb7b82ddSBarry Smith   ierr = MatDestroy(&b->B);CHKERRQ(ierr);
2767cb7b82ddSBarry Smith   ierr = MatCreate(PETSC_COMM_SELF,&b->B);CHKERRQ(ierr);
27685d2a9ed1SStefano Zampini   ierr = MatSetSizes(b->B,B->rmap->n,size > 1 ? B->cmap->N : 0,B->rmap->n,size > 1 ? B->cmap->N : 0);CHKERRQ(ierr);
2769cb7b82ddSBarry Smith   ierr = MatSetType(b->B,MATSEQBAIJ);CHKERRQ(ierr);
2770cb7b82ddSBarry Smith   ierr = PetscLogObjectParent((PetscObject)B,(PetscObject)b->B);CHKERRQ(ierr);
2771cb7b82ddSBarry Smith 
2772526dfc15SBarry Smith   if (!B->preallocated) {
2773f69a0ea3SMatthew Knepley     ierr = MatCreate(PETSC_COMM_SELF,&b->A);CHKERRQ(ierr);
2774d0f46423SBarry Smith     ierr = MatSetSizes(b->A,B->rmap->n,B->cmap->n,B->rmap->n,B->cmap->n);CHKERRQ(ierr);
27759c097c71SKris Buschelman     ierr = MatSetType(b->A,MATSEQBAIJ);CHKERRQ(ierr);
27763bb1ff40SBarry Smith     ierr = PetscLogObjectParent((PetscObject)B,(PetscObject)b->A);CHKERRQ(ierr);
2777ce94432eSBarry Smith     ierr = MatStashCreate_Private(PetscObjectComm((PetscObject)B),bs,&B->bstash);CHKERRQ(ierr);
2778526dfc15SBarry Smith   }
2779a23d5eceSKris Buschelman 
2780526dfc15SBarry Smith   ierr = MatSeqBAIJSetPreallocation(b->A,bs,d_nz,d_nnz);CHKERRQ(ierr);
2781526dfc15SBarry Smith   ierr = MatSeqBAIJSetPreallocation(b->B,bs,o_nz,o_nnz);CHKERRQ(ierr);
2782526dfc15SBarry Smith   B->preallocated  = PETSC_TRUE;
2783cb7b82ddSBarry Smith   B->was_assembled = PETSC_FALSE;
2784cb7b82ddSBarry Smith   B->assembled     = PETSC_FALSE;
2785a23d5eceSKris Buschelman   PetscFunctionReturn(0);
2786a23d5eceSKris Buschelman }
2787a23d5eceSKris Buschelman 
27887087cfbeSBarry Smith extern PetscErrorCode  MatDiagonalScaleLocal_MPIBAIJ(Mat,Vec);
27897087cfbeSBarry Smith extern PetscErrorCode  MatSetHashTableFactor_MPIBAIJ(Mat,PetscReal);
27905bf65638SKris Buschelman 
2791cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIBAIJ_MPIAdj(Mat B, MatType newtype,MatReuse reuse,Mat *adj)
279282094794SBarry Smith {
279382094794SBarry Smith   Mat_MPIBAIJ    *b = (Mat_MPIBAIJ*)B->data;
279482094794SBarry Smith   PetscErrorCode ierr;
279582094794SBarry Smith   Mat_SeqBAIJ    *d  = (Mat_SeqBAIJ*) b->A->data,*o = (Mat_SeqBAIJ*) b->B->data;
279682094794SBarry Smith   PetscInt       M   = B->rmap->n/B->rmap->bs,i,*ii,*jj,cnt,j,k,rstart = B->rmap->rstart/B->rmap->bs;
279782094794SBarry Smith   const PetscInt *id = d->i, *jd = d->j, *io = o->i, *jo = o->j, *garray = b->garray;
279882094794SBarry Smith 
279982094794SBarry Smith   PetscFunctionBegin;
2800854ce69bSBarry Smith   ierr  = PetscMalloc1(M+1,&ii);CHKERRQ(ierr);
280182094794SBarry Smith   ii[0] = 0;
280282094794SBarry Smith   for (i=0; i<M; i++) {
2803e32f2f54SBarry Smith     if ((id[i+1] - id[i]) < 0) SETERRQ3(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Indices wrong %D %D %D",i,id[i],id[i+1]);
2804e32f2f54SBarry Smith     if ((io[i+1] - io[i]) < 0) SETERRQ3(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Indices wrong %D %D %D",i,io[i],io[i+1]);
280582094794SBarry Smith     ii[i+1] = ii[i] + id[i+1] - id[i] + io[i+1] - io[i];
28065ee9ba1cSJed Brown     /* remove one from count of matrix has diagonal */
28075ee9ba1cSJed Brown     for (j=id[i]; j<id[i+1]; j++) {
28085ee9ba1cSJed Brown       if (jd[j] == i) {ii[i+1]--;break;}
28095ee9ba1cSJed Brown     }
281082094794SBarry Smith   }
2811785e854fSJed Brown   ierr = PetscMalloc1(ii[M],&jj);CHKERRQ(ierr);
281282094794SBarry Smith   cnt  = 0;
281382094794SBarry Smith   for (i=0; i<M; i++) {
281482094794SBarry Smith     for (j=io[i]; j<io[i+1]; j++) {
281582094794SBarry Smith       if (garray[jo[j]] > rstart) break;
281682094794SBarry Smith       jj[cnt++] = garray[jo[j]];
281782094794SBarry Smith     }
281882094794SBarry Smith     for (k=id[i]; k<id[i+1]; k++) {
28195ee9ba1cSJed Brown       if (jd[k] != i) {
282082094794SBarry Smith         jj[cnt++] = rstart + jd[k];
282182094794SBarry Smith       }
28225ee9ba1cSJed Brown     }
282382094794SBarry Smith     for (; j<io[i+1]; j++) {
282482094794SBarry Smith       jj[cnt++] = garray[jo[j]];
282582094794SBarry Smith     }
282682094794SBarry Smith   }
2827ce94432eSBarry Smith   ierr = MatCreateMPIAdj(PetscObjectComm((PetscObject)B),M,B->cmap->N/B->rmap->bs,ii,jj,NULL,adj);CHKERRQ(ierr);
282882094794SBarry Smith   PetscFunctionReturn(0);
282982094794SBarry Smith }
283082094794SBarry Smith 
2831c6db04a5SJed Brown #include <../src/mat/impls/aij/mpi/mpiaij.h>
283262471d69SBarry Smith 
2833cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_SeqBAIJ_SeqAIJ(Mat,MatType,MatReuse,Mat*);
2834b2573a8aSBarry Smith 
2835cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIBAIJ_MPIAIJ(Mat A,MatType newtype,MatReuse reuse,Mat *newmat)
283662471d69SBarry Smith {
283762471d69SBarry Smith   PetscErrorCode ierr;
283862471d69SBarry Smith   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)A->data;
283962471d69SBarry Smith   Mat            B;
284085a69837SSatish Balay   Mat_MPIAIJ     *b;
284162471d69SBarry Smith 
284262471d69SBarry Smith   PetscFunctionBegin;
2843ce94432eSBarry Smith   if (!A->assembled) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_SUP,"Matrix must be assembled");
284462471d69SBarry Smith 
28450f6d62edSLisandro Dalcin   if (reuse == MAT_REUSE_MATRIX) {
28460f6d62edSLisandro Dalcin     B = *newmat;
28470f6d62edSLisandro Dalcin   } else {
2848ce94432eSBarry Smith     ierr = MatCreate(PetscObjectComm((PetscObject)A),&B);CHKERRQ(ierr);
28496d0a4a0eSHong Zhang     ierr = MatSetType(B,MATMPIAIJ);CHKERRQ(ierr);
2850f090d951SRémi Lacroix     ierr = MatSetSizes(B,A->rmap->n,A->cmap->n,A->rmap->N,A->cmap->N);CHKERRQ(ierr);
2851f090d951SRémi Lacroix     ierr = MatSetBlockSizes(B,A->rmap->bs,A->cmap->bs);CHKERRQ(ierr);
28520298fd71SBarry Smith     ierr = MatSeqAIJSetPreallocation(B,0,NULL);CHKERRQ(ierr);
28530298fd71SBarry Smith     ierr = MatMPIAIJSetPreallocation(B,0,NULL,0,NULL);CHKERRQ(ierr);
28540f6d62edSLisandro Dalcin   }
285562471d69SBarry Smith   b = (Mat_MPIAIJ*) B->data;
285662471d69SBarry Smith 
28570f6d62edSLisandro Dalcin   if (reuse == MAT_REUSE_MATRIX) {
28580f6d62edSLisandro Dalcin     ierr = MatConvert_SeqBAIJ_SeqAIJ(a->A, MATSEQAIJ, MAT_REUSE_MATRIX, &b->A);CHKERRQ(ierr);
28590f6d62edSLisandro Dalcin     ierr = MatConvert_SeqBAIJ_SeqAIJ(a->B, MATSEQAIJ, MAT_REUSE_MATRIX, &b->B);CHKERRQ(ierr);
28600f6d62edSLisandro Dalcin   } else {
28616bf464f9SBarry Smith     ierr = MatDestroy(&b->A);CHKERRQ(ierr);
28626bf464f9SBarry Smith     ierr = MatDestroy(&b->B);CHKERRQ(ierr);
2863ab9863d7SBarry Smith     ierr = MatDisAssemble_MPIBAIJ(A);CHKERRQ(ierr);
286462471d69SBarry Smith     ierr = MatConvert_SeqBAIJ_SeqAIJ(a->A, MATSEQAIJ, MAT_INITIAL_MATRIX, &b->A);CHKERRQ(ierr);
286562471d69SBarry Smith     ierr = MatConvert_SeqBAIJ_SeqAIJ(a->B, MATSEQAIJ, MAT_INITIAL_MATRIX, &b->B);CHKERRQ(ierr);
28666a719282SBarry Smith     ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
28676a719282SBarry Smith     ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
28680f6d62edSLisandro Dalcin   }
28690f6d62edSLisandro Dalcin   ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
28700f6d62edSLisandro Dalcin   ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
28710f6d62edSLisandro Dalcin 
2872511c6705SHong Zhang   if (reuse == MAT_INPLACE_MATRIX) {
287328be2f97SBarry Smith     ierr = MatHeaderReplace(A,&B);CHKERRQ(ierr);
287462471d69SBarry Smith   } else {
287562471d69SBarry Smith    *newmat = B;
287662471d69SBarry Smith   }
287762471d69SBarry Smith   PetscFunctionReturn(0);
287862471d69SBarry Smith }
287962471d69SBarry Smith 
28800bad9183SKris Buschelman /*MC
2881fafad747SKris Buschelman    MATMPIBAIJ - MATMPIBAIJ = "mpibaij" - A matrix type to be used for distributed block sparse matrices.
28820bad9183SKris Buschelman 
28830bad9183SKris Buschelman    Options Database Keys:
28848c07d4e3SBarry Smith + -mat_type mpibaij - sets the matrix type to "mpibaij" during a call to MatSetFromOptions()
28858c07d4e3SBarry Smith . -mat_block_size <bs> - set the blocksize used to store the matrix
28868c07d4e3SBarry Smith - -mat_use_hash_table <fact>
28870bad9183SKris Buschelman 
28880bad9183SKris Buschelman    Level: beginner
28890cd7f59aSBarry Smith 
28900cd7f59aSBarry Smith    Notes:
28910cd7f59aSBarry Smith     MatSetOptions(,MAT_STRUCTURE_ONLY,PETSC_TRUE) may be called for this matrix type. In this no
28920cd7f59aSBarry Smith     space is allocated for the nonzero entries and any entries passed with MatSetValues() are ignored
28930bad9183SKris Buschelman 
2894fd292e60Sprj- .seealso: MatCreateBAIJ
28950bad9183SKris Buschelman M*/
28960bad9183SKris Buschelman 
2897cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIBAIJ_MPIBSTRM(Mat,MatType,MatReuse,Mat*);
289875d48cdbSStefano Zampini PETSC_INTERN PetscErrorCode MatPtAP_IS_XAIJ(Mat,Mat,MatReuse,PetscReal,Mat*);
2899c0cdd4a1SDahai Guo 
29008cc058d9SJed Brown PETSC_EXTERN PetscErrorCode MatCreate_MPIBAIJ(Mat B)
2901273d9f13SBarry Smith {
2902273d9f13SBarry Smith   Mat_MPIBAIJ    *b;
2903dfbe8321SBarry Smith   PetscErrorCode ierr;
290494ae4db5SBarry Smith   PetscBool      flg = PETSC_FALSE;
2905273d9f13SBarry Smith 
2906273d9f13SBarry Smith   PetscFunctionBegin;
2907b00a9115SJed Brown   ierr    = PetscNewLog(B,&b);CHKERRQ(ierr);
290882502324SSatish Balay   B->data = (void*)b;
290982502324SSatish Balay 
2910273d9f13SBarry Smith   ierr         = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr);
2911273d9f13SBarry Smith   B->assembled = PETSC_FALSE;
2912273d9f13SBarry Smith 
2913273d9f13SBarry Smith   B->insertmode = NOT_SET_VALUES;
2914ce94432eSBarry Smith   ierr          = MPI_Comm_rank(PetscObjectComm((PetscObject)B),&b->rank);CHKERRQ(ierr);
2915ce94432eSBarry Smith   ierr          = MPI_Comm_size(PetscObjectComm((PetscObject)B),&b->size);CHKERRQ(ierr);
2916273d9f13SBarry Smith 
2917273d9f13SBarry Smith   /* build local table of row and column ownerships */
2918854ce69bSBarry Smith   ierr = PetscMalloc1(b->size+1,&b->rangebs);CHKERRQ(ierr);
2919273d9f13SBarry Smith 
2920273d9f13SBarry Smith   /* build cache for off array entries formed */
2921ce94432eSBarry Smith   ierr = MatStashCreate_Private(PetscObjectComm((PetscObject)B),1,&B->stash);CHKERRQ(ierr);
292226fbe8dcSKarl Rupp 
2923273d9f13SBarry Smith   b->donotstash  = PETSC_FALSE;
29240298fd71SBarry Smith   b->colmap      = NULL;
29250298fd71SBarry Smith   b->garray      = NULL;
2926273d9f13SBarry Smith   b->roworiented = PETSC_TRUE;
2927273d9f13SBarry Smith 
2928273d9f13SBarry Smith   /* stuff used in block assembly */
2929273d9f13SBarry Smith   b->barray = 0;
2930273d9f13SBarry Smith 
2931273d9f13SBarry Smith   /* stuff used for matrix vector multiply */
2932273d9f13SBarry Smith   b->lvec  = 0;
2933273d9f13SBarry Smith   b->Mvctx = 0;
2934273d9f13SBarry Smith 
2935273d9f13SBarry Smith   /* stuff for MatGetRow() */
2936273d9f13SBarry Smith   b->rowindices   = 0;
2937273d9f13SBarry Smith   b->rowvalues    = 0;
2938273d9f13SBarry Smith   b->getrowactive = PETSC_FALSE;
2939273d9f13SBarry Smith 
2940273d9f13SBarry Smith   /* hash table stuff */
2941273d9f13SBarry Smith   b->ht           = 0;
2942273d9f13SBarry Smith   b->hd           = 0;
2943273d9f13SBarry Smith   b->ht_size      = 0;
2944273d9f13SBarry Smith   b->ht_flag      = PETSC_FALSE;
2945273d9f13SBarry Smith   b->ht_fact      = 0;
2946273d9f13SBarry Smith   b->ht_total_ct  = 0;
2947273d9f13SBarry Smith   b->ht_insert_ct = 0;
2948273d9f13SBarry Smith 
29497dae84e0SHong Zhang   /* stuff for MatCreateSubMatrices_MPIBAIJ_local() */
29507a868f3eSHong Zhang   b->ijonly = PETSC_FALSE;
29517a868f3eSHong Zhang 
29528c07d4e3SBarry Smith 
2953bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpibaij_mpiadj_C",MatConvert_MPIBAIJ_MPIAdj);CHKERRQ(ierr);
2954bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpibaij_mpiaij_C",MatConvert_MPIBAIJ_MPIAIJ);CHKERRQ(ierr);
2955bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpibaij_mpisbaij_C",MatConvert_MPIBAIJ_MPISBAIJ);CHKERRQ(ierr);
29567ea3e4caSstefano_zampini #if defined(PETSC_HAVE_HYPRE)
29577ea3e4caSstefano_zampini   ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpibaij_hypre_C",MatConvert_AIJ_HYPRE);CHKERRQ(ierr);
29587ea3e4caSstefano_zampini #endif
2959bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatStoreValues_C",MatStoreValues_MPIBAIJ);CHKERRQ(ierr);
2960bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatRetrieveValues_C",MatRetrieveValues_MPIBAIJ);CHKERRQ(ierr);
2961bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatMPIBAIJSetPreallocation_C",MatMPIBAIJSetPreallocation_MPIBAIJ);CHKERRQ(ierr);
2962bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatMPIBAIJSetPreallocationCSR_C",MatMPIBAIJSetPreallocationCSR_MPIBAIJ);CHKERRQ(ierr);
2963bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatDiagonalScaleLocal_C",MatDiagonalScaleLocal_MPIBAIJ);CHKERRQ(ierr);
2964bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatSetHashTableFactor_C",MatSetHashTableFactor_MPIBAIJ);CHKERRQ(ierr);
296575d48cdbSStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)B,"MatPtAP_is_mpibaij_C",MatPtAP_IS_XAIJ);CHKERRQ(ierr);
2966c9225affSStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpibaij_is_C",MatConvert_XAIJ_IS);CHKERRQ(ierr);
296717667f90SBarry Smith   ierr = PetscObjectChangeTypeName((PetscObject)B,MATMPIBAIJ);CHKERRQ(ierr);
296894ae4db5SBarry Smith 
296994ae4db5SBarry Smith   ierr = PetscOptionsBegin(PetscObjectComm((PetscObject)B),NULL,"Options for loading MPIBAIJ matrix 1","Mat");CHKERRQ(ierr);
2970abf3b562SBarry Smith   ierr = PetscOptionsName("-mat_use_hash_table","Use hash table to save time in constructing matrix","MatSetOption",&flg);CHKERRQ(ierr);
297194ae4db5SBarry Smith   if (flg) {
297294ae4db5SBarry Smith     PetscReal fact = 1.39;
297394ae4db5SBarry Smith     ierr = MatSetOption(B,MAT_USE_HASH_TABLE,PETSC_TRUE);CHKERRQ(ierr);
297494ae4db5SBarry Smith     ierr = PetscOptionsReal("-mat_use_hash_table","Use hash table factor","MatMPIBAIJSetHashTableFactor",fact,&fact,NULL);CHKERRQ(ierr);
297594ae4db5SBarry Smith     if (fact <= 1.0) fact = 1.39;
297694ae4db5SBarry Smith     ierr = MatMPIBAIJSetHashTableFactor(B,fact);CHKERRQ(ierr);
297794ae4db5SBarry Smith     ierr = PetscInfo1(B,"Hash table Factor used %5.2f\n",fact);CHKERRQ(ierr);
297894ae4db5SBarry Smith   }
297994ae4db5SBarry Smith   ierr = PetscOptionsEnd();CHKERRQ(ierr);
2980273d9f13SBarry Smith   PetscFunctionReturn(0);
2981273d9f13SBarry Smith }
2982273d9f13SBarry Smith 
2983209238afSKris Buschelman /*MC
2984002d173eSKris Buschelman    MATBAIJ - MATBAIJ = "baij" - A matrix type to be used for block sparse matrices.
2985209238afSKris Buschelman 
2986209238afSKris Buschelman    This matrix type is identical to MATSEQBAIJ when constructed with a single process communicator,
2987209238afSKris Buschelman    and MATMPIBAIJ otherwise.
2988209238afSKris Buschelman 
2989209238afSKris Buschelman    Options Database Keys:
2990209238afSKris Buschelman . -mat_type baij - sets the matrix type to "baij" during a call to MatSetFromOptions()
2991209238afSKris Buschelman 
2992209238afSKris Buschelman   Level: beginner
2993209238afSKris Buschelman 
299469b1f4b7SBarry Smith .seealso: MatCreateBAIJ(),MATSEQBAIJ,MATMPIBAIJ, MatMPIBAIJSetPreallocation(), MatMPIBAIJSetPreallocationCSR()
2995209238afSKris Buschelman M*/
2996209238afSKris Buschelman 
2997273d9f13SBarry Smith /*@C
2998aac34f13SBarry Smith    MatMPIBAIJSetPreallocation - Allocates memory for a sparse parallel matrix in block AIJ format
2999273d9f13SBarry Smith    (block compressed row).  For good matrix assembly performance
3000273d9f13SBarry Smith    the user should preallocate the matrix storage by setting the parameters
3001273d9f13SBarry Smith    d_nz (or d_nnz) and o_nz (or o_nnz).  By setting these parameters accurately,
3002273d9f13SBarry Smith    performance can be increased by more than a factor of 50.
3003273d9f13SBarry Smith 
3004273d9f13SBarry Smith    Collective on Mat
3005273d9f13SBarry Smith 
3006273d9f13SBarry Smith    Input Parameters:
30071c4f3114SJed Brown +  B - the matrix
3008bb7ae925SBarry Smith .  bs   - size of block, the blocks are ALWAYS square. One can use MatSetBlockSizes() to set a different row and column blocksize but the row
3009bb7ae925SBarry Smith           blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with MatCreateVecs()
3010273d9f13SBarry Smith .  d_nz  - number of block nonzeros per block row in diagonal portion of local
3011273d9f13SBarry Smith            submatrix  (same for all local rows)
3012273d9f13SBarry Smith .  d_nnz - array containing the number of block nonzeros in the various block rows
3013273d9f13SBarry Smith            of the in diagonal portion of the local (possibly different for each block
30140298fd71SBarry Smith            row) or NULL.  If you plan to factor the matrix you must leave room for the diagonal entry and
301595742e49SBarry Smith            set it even if it is zero.
3016273d9f13SBarry Smith .  o_nz  - number of block nonzeros per block row in the off-diagonal portion of local
3017273d9f13SBarry Smith            submatrix (same for all local rows).
3018273d9f13SBarry Smith -  o_nnz - array containing the number of nonzeros in the various block rows of the
3019273d9f13SBarry Smith            off-diagonal portion of the local submatrix (possibly different for
30200298fd71SBarry Smith            each block row) or NULL.
3021273d9f13SBarry Smith 
302249a6f317SBarry Smith    If the *_nnz parameter is given then the *_nz parameter is ignored
3023273d9f13SBarry Smith 
3024273d9f13SBarry Smith    Options Database Keys:
30258c07d4e3SBarry Smith +   -mat_block_size - size of the blocks to use
30268c07d4e3SBarry Smith -   -mat_use_hash_table <fact>
3027273d9f13SBarry Smith 
3028273d9f13SBarry Smith    Notes:
3029273d9f13SBarry Smith    If PETSC_DECIDE or  PETSC_DETERMINE is used for a particular argument on one processor
3030273d9f13SBarry Smith    than it must be used on all processors that share the object for that argument.
3031273d9f13SBarry Smith 
3032273d9f13SBarry Smith    Storage Information:
3033273d9f13SBarry Smith    For a square global matrix we define each processor's diagonal portion
3034273d9f13SBarry Smith    to be its local rows and the corresponding columns (a square submatrix);
3035273d9f13SBarry Smith    each processor's off-diagonal portion encompasses the remainder of the
3036273d9f13SBarry Smith    local matrix (a rectangular submatrix).
3037273d9f13SBarry Smith 
3038273d9f13SBarry Smith    The user can specify preallocated storage for the diagonal part of
3039273d9f13SBarry Smith    the local submatrix with either d_nz or d_nnz (not both).  Set
30400298fd71SBarry Smith    d_nz=PETSC_DEFAULT and d_nnz=NULL for PETSc to control dynamic
3041273d9f13SBarry Smith    memory allocation.  Likewise, specify preallocated storage for the
3042273d9f13SBarry Smith    off-diagonal part of the local submatrix with o_nz or o_nnz (not both).
3043273d9f13SBarry Smith 
3044273d9f13SBarry Smith    Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
3045273d9f13SBarry Smith    the figure below we depict these three local rows and all columns (0-11).
3046273d9f13SBarry Smith 
3047273d9f13SBarry Smith .vb
3048273d9f13SBarry Smith            0 1 2 3 4 5 6 7 8 9 10 11
3049a4b1a0f6SJed Brown           --------------------------
3050273d9f13SBarry Smith    row 3  |o o o d d d o o o o  o  o
3051273d9f13SBarry Smith    row 4  |o o o d d d o o o o  o  o
3052273d9f13SBarry Smith    row 5  |o o o d d d o o o o  o  o
3053a4b1a0f6SJed Brown           --------------------------
3054273d9f13SBarry Smith .ve
3055273d9f13SBarry Smith 
3056273d9f13SBarry Smith    Thus, any entries in the d locations are stored in the d (diagonal)
3057273d9f13SBarry Smith    submatrix, and any entries in the o locations are stored in the
3058273d9f13SBarry Smith    o (off-diagonal) submatrix.  Note that the d and the o submatrices are
3059273d9f13SBarry Smith    stored simply in the MATSEQBAIJ format for compressed row storage.
3060273d9f13SBarry Smith 
3061273d9f13SBarry Smith    Now d_nz should indicate the number of block nonzeros per row in the d matrix,
3062273d9f13SBarry Smith    and o_nz should indicate the number of block nonzeros per row in the o matrix.
3063273d9f13SBarry Smith    In general, for PDE problems in which most nonzeros are near the diagonal,
3064273d9f13SBarry Smith    one expects d_nz >> o_nz.   For large problems you MUST preallocate memory
3065273d9f13SBarry Smith    or you will get TERRIBLE performance; see the users' manual chapter on
3066273d9f13SBarry Smith    matrices.
3067273d9f13SBarry Smith 
3068aa95bbe8SBarry Smith    You can call MatGetInfo() to get information on how effective the preallocation was;
3069aa95bbe8SBarry Smith    for example the fields mallocs,nz_allocated,nz_used,nz_unneeded;
3070aa95bbe8SBarry Smith    You can also run with the option -info and look for messages with the string
3071aa95bbe8SBarry Smith    malloc in them to see if additional memory allocation was needed.
3072aa95bbe8SBarry Smith 
3073273d9f13SBarry Smith    Level: intermediate
3074273d9f13SBarry Smith 
3075ab978733SBarry Smith .seealso: MatCreate(), MatCreateSeqBAIJ(), MatSetValues(), MatCreateBAIJ(), MatMPIBAIJSetPreallocationCSR(), PetscSplitOwnership()
3076273d9f13SBarry Smith @*/
30777087cfbeSBarry Smith PetscErrorCode  MatMPIBAIJSetPreallocation(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[])
3078273d9f13SBarry Smith {
30794ac538c5SBarry Smith   PetscErrorCode ierr;
3080273d9f13SBarry Smith 
3081273d9f13SBarry Smith   PetscFunctionBegin;
30826ba663aaSJed Brown   PetscValidHeaderSpecific(B,MAT_CLASSID,1);
30836ba663aaSJed Brown   PetscValidType(B,1);
30846ba663aaSJed Brown   PetscValidLogicalCollectiveInt(B,bs,2);
30854ac538c5SBarry Smith   ierr = PetscTryMethod(B,"MatMPIBAIJSetPreallocation_C",(Mat,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[]),(B,bs,d_nz,d_nnz,o_nz,o_nnz));CHKERRQ(ierr);
3086273d9f13SBarry Smith   PetscFunctionReturn(0);
3087273d9f13SBarry Smith }
3088273d9f13SBarry Smith 
308979bdfe76SSatish Balay /*@C
309069b1f4b7SBarry Smith    MatCreateBAIJ - Creates a sparse parallel matrix in block AIJ format
309179bdfe76SSatish Balay    (block compressed row).  For good matrix assembly performance
309279bdfe76SSatish Balay    the user should preallocate the matrix storage by setting the parameters
309379bdfe76SSatish Balay    d_nz (or d_nnz) and o_nz (or o_nnz).  By setting these parameters accurately,
309479bdfe76SSatish Balay    performance can be increased by more than a factor of 50.
309579bdfe76SSatish Balay 
3096d083f849SBarry Smith    Collective
3097db81eaa0SLois Curfman McInnes 
309879bdfe76SSatish Balay    Input Parameters:
3099db81eaa0SLois Curfman McInnes +  comm - MPI communicator
3100bb7ae925SBarry Smith .  bs   - size of block, the blocks are ALWAYS square. One can use MatSetBlockSizes() to set a different row and column blocksize but the row
3101bb7ae925SBarry Smith           blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with MatCreateVecs()
310279bdfe76SSatish Balay .  m - number of local rows (or PETSC_DECIDE to have calculated if M is given)
310392e8d321SLois Curfman McInnes            This value should be the same as the local size used in creating the
310492e8d321SLois Curfman McInnes            y vector for the matrix-vector product y = Ax.
310592e8d321SLois Curfman McInnes .  n - number of local columns (or PETSC_DECIDE to have calculated if N is given)
310692e8d321SLois Curfman McInnes            This value should be the same as the local size used in creating the
310792e8d321SLois Curfman McInnes            x vector for the matrix-vector product y = Ax.
3108be79a94dSBarry Smith .  M - number of global rows (or PETSC_DETERMINE to have calculated if m is given)
3109be79a94dSBarry Smith .  N - number of global columns (or PETSC_DETERMINE to have calculated if n is given)
311047a75d0bSBarry Smith .  d_nz  - number of nonzero blocks per block row in diagonal portion of local
311179bdfe76SSatish Balay            submatrix  (same for all local rows)
311247a75d0bSBarry Smith .  d_nnz - array containing the number of nonzero blocks in the various block rows
311392e8d321SLois Curfman McInnes            of the in diagonal portion of the local (possibly different for each block
31140298fd71SBarry Smith            row) or NULL.  If you plan to factor the matrix you must leave room for the diagonal entry
311595742e49SBarry Smith            and set it even if it is zero.
311647a75d0bSBarry Smith .  o_nz  - number of nonzero blocks per block row in the off-diagonal portion of local
311779bdfe76SSatish Balay            submatrix (same for all local rows).
311847a75d0bSBarry Smith -  o_nnz - array containing the number of nonzero blocks in the various block rows of the
311992e8d321SLois Curfman McInnes            off-diagonal portion of the local submatrix (possibly different for
31200298fd71SBarry Smith            each block row) or NULL.
312179bdfe76SSatish Balay 
312279bdfe76SSatish Balay    Output Parameter:
312379bdfe76SSatish Balay .  A - the matrix
312479bdfe76SSatish Balay 
3125db81eaa0SLois Curfman McInnes    Options Database Keys:
31268c07d4e3SBarry Smith +   -mat_block_size - size of the blocks to use
31278c07d4e3SBarry Smith -   -mat_use_hash_table <fact>
31283ffaccefSLois Curfman McInnes 
3129175b88e8SBarry Smith    It is recommended that one use the MatCreate(), MatSetType() and/or MatSetFromOptions(),
3130f6f02116SRichard Tran Mills    MatXXXXSetPreallocation() paradigm instead of this routine directly.
3131175b88e8SBarry Smith    [MatXXXXSetPreallocation() is, for example, MatSeqAIJSetPreallocation]
3132175b88e8SBarry Smith 
3133b259b22eSLois Curfman McInnes    Notes:
313449a6f317SBarry Smith    If the *_nnz parameter is given then the *_nz parameter is ignored
313549a6f317SBarry Smith 
313647a75d0bSBarry Smith    A nonzero block is any block that as 1 or more nonzeros in it
313747a75d0bSBarry Smith 
313879bdfe76SSatish Balay    The user MUST specify either the local or global matrix dimensions
313979bdfe76SSatish Balay    (possibly both).
314079bdfe76SSatish Balay 
3141be79a94dSBarry Smith    If PETSC_DECIDE or  PETSC_DETERMINE is used for a particular argument on one processor
3142be79a94dSBarry Smith    than it must be used on all processors that share the object for that argument.
3143be79a94dSBarry Smith 
314479bdfe76SSatish Balay    Storage Information:
314579bdfe76SSatish Balay    For a square global matrix we define each processor's diagonal portion
314679bdfe76SSatish Balay    to be its local rows and the corresponding columns (a square submatrix);
314779bdfe76SSatish Balay    each processor's off-diagonal portion encompasses the remainder of the
314879bdfe76SSatish Balay    local matrix (a rectangular submatrix).
314979bdfe76SSatish Balay 
315079bdfe76SSatish Balay    The user can specify preallocated storage for the diagonal part of
315179bdfe76SSatish Balay    the local submatrix with either d_nz or d_nnz (not both).  Set
31520298fd71SBarry Smith    d_nz=PETSC_DEFAULT and d_nnz=NULL for PETSc to control dynamic
315379bdfe76SSatish Balay    memory allocation.  Likewise, specify preallocated storage for the
315479bdfe76SSatish Balay    off-diagonal part of the local submatrix with o_nz or o_nnz (not both).
315579bdfe76SSatish Balay 
315679bdfe76SSatish Balay    Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
315779bdfe76SSatish Balay    the figure below we depict these three local rows and all columns (0-11).
315879bdfe76SSatish Balay 
3159db81eaa0SLois Curfman McInnes .vb
3160db81eaa0SLois Curfman McInnes            0 1 2 3 4 5 6 7 8 9 10 11
3161a4b1a0f6SJed Brown           --------------------------
3162db81eaa0SLois Curfman McInnes    row 3  |o o o d d d o o o o  o  o
3163db81eaa0SLois Curfman McInnes    row 4  |o o o d d d o o o o  o  o
3164db81eaa0SLois Curfman McInnes    row 5  |o o o d d d o o o o  o  o
3165a4b1a0f6SJed Brown           --------------------------
3166db81eaa0SLois Curfman McInnes .ve
316779bdfe76SSatish Balay 
316879bdfe76SSatish Balay    Thus, any entries in the d locations are stored in the d (diagonal)
316979bdfe76SSatish Balay    submatrix, and any entries in the o locations are stored in the
317079bdfe76SSatish Balay    o (off-diagonal) submatrix.  Note that the d and the o submatrices are
317157b952d6SSatish Balay    stored simply in the MATSEQBAIJ format for compressed row storage.
317279bdfe76SSatish Balay 
3173d64ed03dSBarry Smith    Now d_nz should indicate the number of block nonzeros per row in the d matrix,
3174d64ed03dSBarry Smith    and o_nz should indicate the number of block nonzeros per row in the o matrix.
317579bdfe76SSatish Balay    In general, for PDE problems in which most nonzeros are near the diagonal,
317692e8d321SLois Curfman McInnes    one expects d_nz >> o_nz.   For large problems you MUST preallocate memory
317792e8d321SLois Curfman McInnes    or you will get TERRIBLE performance; see the users' manual chapter on
31786da5968aSLois Curfman McInnes    matrices.
317979bdfe76SSatish Balay 
3180027ccd11SLois Curfman McInnes    Level: intermediate
3181027ccd11SLois Curfman McInnes 
318269b1f4b7SBarry Smith .seealso: MatCreate(), MatCreateSeqBAIJ(), MatSetValues(), MatCreateBAIJ(), MatMPIBAIJSetPreallocation(), MatMPIBAIJSetPreallocationCSR()
318379bdfe76SSatish Balay @*/
318469b1f4b7SBarry Smith PetscErrorCode  MatCreateBAIJ(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[],Mat *A)
318579bdfe76SSatish Balay {
31866849ba73SBarry Smith   PetscErrorCode ierr;
3187b24ad042SBarry Smith   PetscMPIInt    size;
318879bdfe76SSatish Balay 
3189d64ed03dSBarry Smith   PetscFunctionBegin;
3190f69a0ea3SMatthew Knepley   ierr = MatCreate(comm,A);CHKERRQ(ierr);
3191f69a0ea3SMatthew Knepley   ierr = MatSetSizes(*A,m,n,M,N);CHKERRQ(ierr);
3192d132466eSBarry Smith   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
3193273d9f13SBarry Smith   if (size > 1) {
3194273d9f13SBarry Smith     ierr = MatSetType(*A,MATMPIBAIJ);CHKERRQ(ierr);
3195273d9f13SBarry Smith     ierr = MatMPIBAIJSetPreallocation(*A,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr);
3196273d9f13SBarry Smith   } else {
3197273d9f13SBarry Smith     ierr = MatSetType(*A,MATSEQBAIJ);CHKERRQ(ierr);
3198273d9f13SBarry Smith     ierr = MatSeqBAIJSetPreallocation(*A,bs,d_nz,d_nnz);CHKERRQ(ierr);
31993914022bSBarry Smith   }
32003a40ed3dSBarry Smith   PetscFunctionReturn(0);
320179bdfe76SSatish Balay }
3202026e39d0SSatish Balay 
32036849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIBAIJ(Mat matin,MatDuplicateOption cpvalues,Mat *newmat)
32040ac07820SSatish Balay {
32050ac07820SSatish Balay   Mat            mat;
32060ac07820SSatish Balay   Mat_MPIBAIJ    *a,*oldmat = (Mat_MPIBAIJ*)matin->data;
3207dfbe8321SBarry Smith   PetscErrorCode ierr;
3208b24ad042SBarry Smith   PetscInt       len=0;
32090ac07820SSatish Balay 
3210d64ed03dSBarry Smith   PetscFunctionBegin;
32110ac07820SSatish Balay   *newmat = 0;
3212ce94432eSBarry Smith   ierr    = MatCreate(PetscObjectComm((PetscObject)matin),&mat);CHKERRQ(ierr);
3213d0f46423SBarry Smith   ierr    = MatSetSizes(mat,matin->rmap->n,matin->cmap->n,matin->rmap->N,matin->cmap->N);CHKERRQ(ierr);
32147adad957SLisandro Dalcin   ierr    = MatSetType(mat,((PetscObject)matin)->type_name);CHKERRQ(ierr);
32157fff6886SHong Zhang 
3216d5f3da31SBarry Smith   mat->factortype   = matin->factortype;
3217273d9f13SBarry Smith   mat->preallocated = PETSC_TRUE;
32180ac07820SSatish Balay   mat->assembled    = PETSC_TRUE;
32197fff6886SHong Zhang   mat->insertmode   = NOT_SET_VALUES;
32207fff6886SHong Zhang 
3221273d9f13SBarry Smith   a             = (Mat_MPIBAIJ*)mat->data;
3222d0f46423SBarry Smith   mat->rmap->bs = matin->rmap->bs;
32230ac07820SSatish Balay   a->bs2        = oldmat->bs2;
32240ac07820SSatish Balay   a->mbs        = oldmat->mbs;
32250ac07820SSatish Balay   a->nbs        = oldmat->nbs;
32260ac07820SSatish Balay   a->Mbs        = oldmat->Mbs;
32270ac07820SSatish Balay   a->Nbs        = oldmat->Nbs;
32280ac07820SSatish Balay 
32291e1e43feSBarry Smith   ierr = PetscLayoutReference(matin->rmap,&mat->rmap);CHKERRQ(ierr);
32301e1e43feSBarry Smith   ierr = PetscLayoutReference(matin->cmap,&mat->cmap);CHKERRQ(ierr);
3231899cda47SBarry Smith 
32320ac07820SSatish Balay   a->size         = oldmat->size;
32330ac07820SSatish Balay   a->rank         = oldmat->rank;
3234aef5e8e0SSatish Balay   a->donotstash   = oldmat->donotstash;
3235aef5e8e0SSatish Balay   a->roworiented  = oldmat->roworiented;
3236aef5e8e0SSatish Balay   a->rowindices   = 0;
32370ac07820SSatish Balay   a->rowvalues    = 0;
32380ac07820SSatish Balay   a->getrowactive = PETSC_FALSE;
323930793edcSSatish Balay   a->barray       = 0;
3240899cda47SBarry Smith   a->rstartbs     = oldmat->rstartbs;
3241899cda47SBarry Smith   a->rendbs       = oldmat->rendbs;
3242899cda47SBarry Smith   a->cstartbs     = oldmat->cstartbs;
3243899cda47SBarry Smith   a->cendbs       = oldmat->cendbs;
32440ac07820SSatish Balay 
3245133cdb44SSatish Balay   /* hash table stuff */
3246133cdb44SSatish Balay   a->ht           = 0;
3247133cdb44SSatish Balay   a->hd           = 0;
3248133cdb44SSatish Balay   a->ht_size      = 0;
3249133cdb44SSatish Balay   a->ht_flag      = oldmat->ht_flag;
325025fdafccSSatish Balay   a->ht_fact      = oldmat->ht_fact;
3251133cdb44SSatish Balay   a->ht_total_ct  = 0;
3252133cdb44SSatish Balay   a->ht_insert_ct = 0;
3253133cdb44SSatish Balay 
3254580bdb30SBarry Smith   ierr = PetscArraycpy(a->rangebs,oldmat->rangebs,a->size+1);CHKERRQ(ierr);
32550ac07820SSatish Balay   if (oldmat->colmap) {
3256aa482453SBarry Smith #if defined(PETSC_USE_CTABLE)
32570f5bd95cSBarry Smith     ierr = PetscTableCreateCopy(oldmat->colmap,&a->colmap);CHKERRQ(ierr);
325848e59246SSatish Balay #else
3259854ce69bSBarry Smith     ierr = PetscMalloc1(a->Nbs,&a->colmap);CHKERRQ(ierr);
32603bb1ff40SBarry Smith     ierr = PetscLogObjectMemory((PetscObject)mat,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr);
3261580bdb30SBarry Smith     ierr = PetscArraycpy(a->colmap,oldmat->colmap,a->Nbs);CHKERRQ(ierr);
326248e59246SSatish Balay #endif
32630ac07820SSatish Balay   } else a->colmap = 0;
32644beb1cfeSHong Zhang 
32650ac07820SSatish Balay   if (oldmat->garray && (len = ((Mat_SeqBAIJ*)(oldmat->B->data))->nbs)) {
3266785e854fSJed Brown     ierr = PetscMalloc1(len,&a->garray);CHKERRQ(ierr);
32673bb1ff40SBarry Smith     ierr = PetscLogObjectMemory((PetscObject)mat,len*sizeof(PetscInt));CHKERRQ(ierr);
3268580bdb30SBarry Smith     ierr = PetscArraycpy(a->garray,oldmat->garray,len);CHKERRQ(ierr);
32690ac07820SSatish Balay   } else a->garray = 0;
32700ac07820SSatish Balay 
3271ce94432eSBarry Smith   ierr = MatStashCreate_Private(PetscObjectComm((PetscObject)matin),matin->rmap->bs,&mat->bstash);CHKERRQ(ierr);
32720ac07820SSatish Balay   ierr = VecDuplicate(oldmat->lvec,&a->lvec);CHKERRQ(ierr);
32733bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->lvec);CHKERRQ(ierr);
32740ac07820SSatish Balay   ierr = VecScatterCopy(oldmat->Mvctx,&a->Mvctx);CHKERRQ(ierr);
32753bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->Mvctx);CHKERRQ(ierr);
32767fff6886SHong Zhang 
32772e8a6d31SBarry Smith   ierr    = MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr);
32783bb1ff40SBarry Smith   ierr    = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->A);CHKERRQ(ierr);
32792e8a6d31SBarry Smith   ierr    = MatDuplicate(oldmat->B,cpvalues,&a->B);CHKERRQ(ierr);
32803bb1ff40SBarry Smith   ierr    = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->B);CHKERRQ(ierr);
3281140e18c1SBarry Smith   ierr    = PetscFunctionListDuplicate(((PetscObject)matin)->qlist,&((PetscObject)mat)->qlist);CHKERRQ(ierr);
32820ac07820SSatish Balay   *newmat = mat;
32833a40ed3dSBarry Smith   PetscFunctionReturn(0);
32840ac07820SSatish Balay }
328557b952d6SSatish Balay 
3286*618cc2edSLisandro Dalcin /* Used for both MPIBAIJ and MPISBAIJ matrices */
3287b51a4376SLisandro Dalcin PetscErrorCode MatLoad_MPIBAIJ_Binary(Mat mat,PetscViewer viewer)
3288b51a4376SLisandro Dalcin {
3289b51a4376SLisandro Dalcin   PetscInt       header[4],M,N,nz,bs,m,n,mbs,nbs,rows,cols,sum,i,j,k;
3290b51a4376SLisandro Dalcin   PetscInt       *rowidxs,*colidxs,rs,cs,ce;
3291b51a4376SLisandro Dalcin   PetscScalar    *matvals;
3292b51a4376SLisandro Dalcin   PetscErrorCode ierr;
3293b51a4376SLisandro Dalcin 
3294b51a4376SLisandro Dalcin   PetscFunctionBegin;
3295b51a4376SLisandro Dalcin   ierr = PetscViewerSetUp(viewer);CHKERRQ(ierr);
3296b51a4376SLisandro Dalcin 
3297b51a4376SLisandro Dalcin   /* read in matrix header */
3298b51a4376SLisandro Dalcin   ierr = PetscViewerBinaryRead(viewer,header,4,NULL,PETSC_INT);CHKERRQ(ierr);
3299b51a4376SLisandro Dalcin   if (header[0] != MAT_FILE_CLASSID) SETERRQ(PetscObjectComm((PetscObject)viewer),PETSC_ERR_FILE_UNEXPECTED,"Not a matrix object in file");
3300b51a4376SLisandro Dalcin   M  = header[1]; N = header[2]; nz = header[3];
3301b51a4376SLisandro Dalcin   if (M < 0) SETERRQ1(PetscObjectComm((PetscObject)viewer),PETSC_ERR_FILE_UNEXPECTED,"Matrix row size (%D) in file is negative",M);
3302b51a4376SLisandro Dalcin   if (N < 0) SETERRQ1(PetscObjectComm((PetscObject)viewer),PETSC_ERR_FILE_UNEXPECTED,"Matrix column size (%D) in file is negative",N);
3303b51a4376SLisandro Dalcin   if (nz < 0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"Matrix stored in special format on disk, cannot load as MPIBAIJ");
3304b51a4376SLisandro Dalcin 
3305b51a4376SLisandro Dalcin   /* set block sizes from the viewer's .info file */
3306b51a4376SLisandro Dalcin   ierr = MatLoad_Binary_BlockSizes(mat,viewer);CHKERRQ(ierr);
3307*618cc2edSLisandro Dalcin   /* set local sizes if not set already */
3308*618cc2edSLisandro Dalcin   if (mat->rmap->n < 0 && M == N) mat->rmap->n = mat->cmap->n;
3309*618cc2edSLisandro Dalcin   if (mat->cmap->n < 0 && M == N) mat->cmap->n = mat->rmap->n;
3310b51a4376SLisandro Dalcin   /* set global sizes if not set already */
3311b51a4376SLisandro Dalcin   if (mat->rmap->N < 0) mat->rmap->N = M;
3312b51a4376SLisandro Dalcin   if (mat->cmap->N < 0) mat->cmap->N = N;
3313b51a4376SLisandro Dalcin   ierr = PetscLayoutSetUp(mat->rmap);CHKERRQ(ierr);
3314b51a4376SLisandro Dalcin   ierr = PetscLayoutSetUp(mat->cmap);CHKERRQ(ierr);
3315b51a4376SLisandro Dalcin 
3316b51a4376SLisandro Dalcin   /* check if the matrix sizes are correct */
3317b51a4376SLisandro Dalcin   ierr = MatGetSize(mat,&rows,&cols);CHKERRQ(ierr);
3318b51a4376SLisandro Dalcin   if (M != rows || N != cols) SETERRQ4(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED, "Matrix in file of different sizes (%D, %D) than the input matrix (%D, %D)",M,N,rows,cols);
3319b51a4376SLisandro Dalcin   ierr = MatGetBlockSize(mat,&bs);CHKERRQ(ierr);
3320b51a4376SLisandro Dalcin   ierr = MatGetLocalSize(mat,&m,&n);CHKERRQ(ierr);
3321b51a4376SLisandro Dalcin   ierr = PetscLayoutGetRange(mat->rmap,&rs,NULL);
3322b51a4376SLisandro Dalcin   ierr = PetscLayoutGetRange(mat->cmap,&cs,&ce);
3323b51a4376SLisandro Dalcin   mbs = m/bs; nbs = n/bs;
3324b51a4376SLisandro Dalcin 
3325b51a4376SLisandro Dalcin   /* read in row lengths and build row indices */
3326b51a4376SLisandro Dalcin   ierr = PetscMalloc1(m+1,&rowidxs);CHKERRQ(ierr);
3327b51a4376SLisandro Dalcin   ierr = PetscViewerBinaryReadAll(viewer,rowidxs+1,m,PETSC_DECIDE,M,PETSC_INT);CHKERRQ(ierr);
3328b51a4376SLisandro Dalcin   rowidxs[0] = 0; for (i=0; i<m; i++) rowidxs[i+1] += rowidxs[i];
3329b51a4376SLisandro Dalcin   ierr = MPIU_Allreduce(&rowidxs[m],&sum,1,MPIU_INT,MPI_SUM,PetscObjectComm((PetscObject)viewer));CHKERRQ(ierr);
3330b51a4376SLisandro Dalcin   if (sum != nz) SETERRQ2(PetscObjectComm((PetscObject)viewer),PETSC_ERR_FILE_UNEXPECTED,"Inconsistent matrix data in file: nonzeros = %D, sum-row-lengths = %D\n",nz,sum);
3331b51a4376SLisandro Dalcin 
3332b51a4376SLisandro Dalcin   /* read in column indices and matrix values */
3333b51a4376SLisandro Dalcin   ierr = PetscMalloc2(rowidxs[m],&colidxs,rowidxs[m],&matvals);CHKERRQ(ierr);
3334b51a4376SLisandro Dalcin   ierr = PetscViewerBinaryReadAll(viewer,colidxs,rowidxs[m],PETSC_DETERMINE,PETSC_DETERMINE,PETSC_INT);CHKERRQ(ierr);
3335b51a4376SLisandro Dalcin   ierr = PetscViewerBinaryReadAll(viewer,matvals,rowidxs[m],PETSC_DETERMINE,PETSC_DETERMINE,PETSC_SCALAR);CHKERRQ(ierr);
3336b51a4376SLisandro Dalcin 
3337b51a4376SLisandro Dalcin   { /* preallocate matrix storage */
3338b51a4376SLisandro Dalcin     PetscBT    bt; /* helper bit set to count diagonal nonzeros */
3339b51a4376SLisandro Dalcin     PetscHSetI ht; /* helper hash set to count off-diagonal nonzeros */
3340*618cc2edSLisandro Dalcin     PetscBool  sbaij,done;
3341b51a4376SLisandro Dalcin     PetscInt   *d_nnz,*o_nnz;
3342b51a4376SLisandro Dalcin 
3343b51a4376SLisandro Dalcin     ierr = PetscBTCreate(nbs,&bt);CHKERRQ(ierr);
3344b51a4376SLisandro Dalcin     ierr = PetscHSetICreate(&ht);CHKERRQ(ierr);
3345b51a4376SLisandro Dalcin     ierr = PetscCalloc2(mbs,&d_nnz,mbs,&o_nnz);CHKERRQ(ierr);
3346*618cc2edSLisandro Dalcin     ierr = PetscObjectTypeCompare((PetscObject)mat,MATMPISBAIJ,&sbaij);CHKERRQ(ierr);
3347b51a4376SLisandro Dalcin     for (i=0; i<mbs; i++) {
3348b51a4376SLisandro Dalcin       ierr = PetscBTMemzero(nbs,bt);CHKERRQ(ierr);
3349b51a4376SLisandro Dalcin       ierr = PetscHSetIClear(ht);CHKERRQ(ierr);
3350*618cc2edSLisandro Dalcin       for (k=0; k<bs; k++) {
3351*618cc2edSLisandro Dalcin         PetscInt row = bs*i + k;
3352*618cc2edSLisandro Dalcin         for (j=rowidxs[row]; j<rowidxs[row+1]; j++) {
3353*618cc2edSLisandro Dalcin           PetscInt col = colidxs[j];
3354*618cc2edSLisandro Dalcin           if (!sbaij || col >= row) {
3355*618cc2edSLisandro Dalcin             if (col >= cs && col < ce) {
3356*618cc2edSLisandro Dalcin               if (!PetscBTLookupSet(bt,(col-cs)/bs)) d_nnz[i]++;
3357b51a4376SLisandro Dalcin             } else {
3358*618cc2edSLisandro Dalcin               ierr = PetscHSetIQueryAdd(ht,col/bs,&done);CHKERRQ(ierr);
3359b51a4376SLisandro Dalcin               if (done) o_nnz[i]++;
3360b51a4376SLisandro Dalcin             }
3361b51a4376SLisandro Dalcin           }
3362*618cc2edSLisandro Dalcin         }
3363*618cc2edSLisandro Dalcin       }
3364*618cc2edSLisandro Dalcin     }
3365b51a4376SLisandro Dalcin     ierr = PetscBTDestroy(&bt);CHKERRQ(ierr);
3366b51a4376SLisandro Dalcin     ierr = PetscHSetIDestroy(&ht);CHKERRQ(ierr);
3367b51a4376SLisandro Dalcin     ierr = MatMPIBAIJSetPreallocation(mat,bs,0,d_nnz,0,o_nnz);CHKERRQ(ierr);
3368*618cc2edSLisandro Dalcin     ierr = MatMPISBAIJSetPreallocation(mat,bs,0,d_nnz,0,o_nnz);CHKERRQ(ierr);
3369b51a4376SLisandro Dalcin     ierr = PetscFree2(d_nnz,o_nnz);CHKERRQ(ierr);
3370b51a4376SLisandro Dalcin   }
3371b51a4376SLisandro Dalcin 
3372b51a4376SLisandro Dalcin   /* store matrix values */
3373b51a4376SLisandro Dalcin   for (i=0; i<m; i++) {
3374b51a4376SLisandro Dalcin     PetscInt row = rs + i, s = rowidxs[i], e = rowidxs[i+1];
3375*618cc2edSLisandro Dalcin     ierr = (*mat->ops->setvalues)(mat,1,&row,e-s,colidxs+s,matvals+s,INSERT_VALUES);CHKERRQ(ierr);
3376b51a4376SLisandro Dalcin   }
3377b51a4376SLisandro Dalcin 
3378b51a4376SLisandro Dalcin   ierr = PetscFree(rowidxs);CHKERRQ(ierr);
3379b51a4376SLisandro Dalcin   ierr = PetscFree2(colidxs,matvals);CHKERRQ(ierr);
3380b51a4376SLisandro Dalcin   ierr = MatAssemblyBegin(mat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
3381b51a4376SLisandro Dalcin   ierr = MatAssemblyEnd(mat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
3382b51a4376SLisandro Dalcin   PetscFunctionReturn(0);
3383b51a4376SLisandro Dalcin }
3384b51a4376SLisandro Dalcin 
3385b51a4376SLisandro Dalcin PetscErrorCode MatLoad_MPIBAIJ(Mat mat,PetscViewer viewer)
33864683f7a4SShri Abhyankar {
33874683f7a4SShri Abhyankar   PetscErrorCode ierr;
33887f489da9SVaclav Hapla   PetscBool      isbinary;
33894683f7a4SShri Abhyankar 
33904683f7a4SShri Abhyankar   PetscFunctionBegin;
33917f489da9SVaclav Hapla   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary);CHKERRQ(ierr);
3392b51a4376SLisandro Dalcin   if (!isbinary) SETERRQ2(PetscObjectComm((PetscObject)viewer),PETSC_ERR_SUP,"Viewer type %s not yet supported for reading %s matrices",((PetscObject)viewer)->type_name,((PetscObject)mat)->type_name);
3393b51a4376SLisandro Dalcin   ierr = MatLoad_MPIBAIJ_Binary(mat,viewer);CHKERRQ(ierr);
33944683f7a4SShri Abhyankar   PetscFunctionReturn(0);
33954683f7a4SShri Abhyankar }
33964683f7a4SShri Abhyankar 
3397133cdb44SSatish Balay /*@
3398133cdb44SSatish Balay    MatMPIBAIJSetHashTableFactor - Sets the factor required to compute the size of the HashTable.
3399133cdb44SSatish Balay 
3400133cdb44SSatish Balay    Input Parameters:
3401a2b725a8SWilliam Gropp +  mat  - the matrix
3402a2b725a8SWilliam Gropp -  fact - factor
3403133cdb44SSatish Balay 
3404c5eb9154SBarry Smith    Not Collective, each process can use a different factor
3405fee21e36SBarry Smith 
34068c890885SBarry Smith    Level: advanced
34078c890885SBarry Smith 
3408133cdb44SSatish Balay   Notes:
34098c07d4e3SBarry Smith    This can also be set by the command line option: -mat_use_hash_table <fact>
3410133cdb44SSatish Balay 
3411133cdb44SSatish Balay .seealso: MatSetOption()
3412133cdb44SSatish Balay @*/
34137087cfbeSBarry Smith PetscErrorCode  MatMPIBAIJSetHashTableFactor(Mat mat,PetscReal fact)
3414133cdb44SSatish Balay {
34154ac538c5SBarry Smith   PetscErrorCode ierr;
34165bf65638SKris Buschelman 
34175bf65638SKris Buschelman   PetscFunctionBegin;
34184ac538c5SBarry Smith   ierr = PetscTryMethod(mat,"MatSetHashTableFactor_C",(Mat,PetscReal),(mat,fact));CHKERRQ(ierr);
34195bf65638SKris Buschelman   PetscFunctionReturn(0);
34205bf65638SKris Buschelman }
34215bf65638SKris Buschelman 
34227087cfbeSBarry Smith PetscErrorCode  MatSetHashTableFactor_MPIBAIJ(Mat mat,PetscReal fact)
34235bf65638SKris Buschelman {
342425fdafccSSatish Balay   Mat_MPIBAIJ *baij;
3425133cdb44SSatish Balay 
3426133cdb44SSatish Balay   PetscFunctionBegin;
3427133cdb44SSatish Balay   baij          = (Mat_MPIBAIJ*)mat->data;
3428133cdb44SSatish Balay   baij->ht_fact = fact;
3429133cdb44SSatish Balay   PetscFunctionReturn(0);
3430133cdb44SSatish Balay }
3431f2a5309cSSatish Balay 
34329230625dSJed Brown PetscErrorCode  MatMPIBAIJGetSeqBAIJ(Mat A,Mat *Ad,Mat *Ao,const PetscInt *colmap[])
3433f2a5309cSSatish Balay {
3434f2a5309cSSatish Balay   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)A->data;
3435ab4d48faSStefano Zampini   PetscBool      flg;
3436ab4d48faSStefano Zampini   PetscErrorCode ierr;
34375fd66863SKarl Rupp 
3438f2a5309cSSatish Balay   PetscFunctionBegin;
3439ab4d48faSStefano Zampini   ierr = PetscObjectTypeCompare((PetscObject)A,MATMPIBAIJ,&flg);CHKERRQ(ierr);
3440ab4d48faSStefano Zampini   if (!flg) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_SUP,"This function requires a MATMPIBAIJ matrix as input");
344121e72a00SBarry Smith   if (Ad)     *Ad     = a->A;
344221e72a00SBarry Smith   if (Ao)     *Ao     = a->B;
344321e72a00SBarry Smith   if (colmap) *colmap = a->garray;
3444f2a5309cSSatish Balay   PetscFunctionReturn(0);
3445f2a5309cSSatish Balay }
344685535b8eSBarry Smith 
344785535b8eSBarry Smith /*
344885535b8eSBarry Smith     Special version for direct calls from Fortran (to eliminate two function call overheads
344985535b8eSBarry Smith */
345085535b8eSBarry Smith #if defined(PETSC_HAVE_FORTRAN_CAPS)
345185535b8eSBarry Smith #define matmpibaijsetvaluesblocked_ MATMPIBAIJSETVALUESBLOCKED
345285535b8eSBarry Smith #elif !defined(PETSC_HAVE_FORTRAN_UNDERSCORE)
345385535b8eSBarry Smith #define matmpibaijsetvaluesblocked_ matmpibaijsetvaluesblocked
345485535b8eSBarry Smith #endif
345585535b8eSBarry Smith 
345685535b8eSBarry Smith /*@C
345785535b8eSBarry Smith   MatMPIBAIJSetValuesBlocked - Direct Fortran call to replace call to MatSetValuesBlocked()
345885535b8eSBarry Smith 
345985535b8eSBarry Smith   Collective on Mat
346085535b8eSBarry Smith 
346185535b8eSBarry Smith   Input Parameters:
346285535b8eSBarry Smith + mat - the matrix
346385535b8eSBarry Smith . min - number of input rows
346485535b8eSBarry Smith . im - input rows
346585535b8eSBarry Smith . nin - number of input columns
346685535b8eSBarry Smith . in - input columns
346785535b8eSBarry Smith . v - numerical values input
346885535b8eSBarry Smith - addvin - INSERT_VALUES or ADD_VALUES
346985535b8eSBarry Smith 
347095452b02SPatrick Sanan   Notes:
347195452b02SPatrick Sanan     This has a complete copy of MatSetValuesBlocked_MPIBAIJ() which is terrible code un-reuse.
347285535b8eSBarry Smith 
347385535b8eSBarry Smith   Level: advanced
347485535b8eSBarry Smith 
347585535b8eSBarry Smith .seealso:   MatSetValuesBlocked()
347685535b8eSBarry Smith @*/
347785535b8eSBarry Smith PetscErrorCode matmpibaijsetvaluesblocked_(Mat *matin,PetscInt *min,const PetscInt im[],PetscInt *nin,const PetscInt in[],const MatScalar v[],InsertMode *addvin)
347885535b8eSBarry Smith {
347985535b8eSBarry Smith   /* convert input arguments to C version */
348085535b8eSBarry Smith   Mat        mat  = *matin;
348185535b8eSBarry Smith   PetscInt   m    = *min, n = *nin;
348285535b8eSBarry Smith   InsertMode addv = *addvin;
348385535b8eSBarry Smith 
348485535b8eSBarry Smith   Mat_MPIBAIJ     *baij = (Mat_MPIBAIJ*)mat->data;
348585535b8eSBarry Smith   const MatScalar *value;
348685535b8eSBarry Smith   MatScalar       *barray     = baij->barray;
3487ace3abfcSBarry Smith   PetscBool       roworiented = baij->roworiented;
348885535b8eSBarry Smith   PetscErrorCode  ierr;
348985535b8eSBarry Smith   PetscInt        i,j,ii,jj,row,col,rstart=baij->rstartbs;
349085535b8eSBarry Smith   PetscInt        rend=baij->rendbs,cstart=baij->cstartbs,stepval;
3491d0f46423SBarry Smith   PetscInt        cend=baij->cendbs,bs=mat->rmap->bs,bs2=baij->bs2;
349285535b8eSBarry Smith 
349385535b8eSBarry Smith   PetscFunctionBegin;
349485535b8eSBarry Smith   /* tasks normally handled by MatSetValuesBlocked() */
349526fbe8dcSKarl Rupp   if (mat->insertmode == NOT_SET_VALUES) mat->insertmode = addv;
349685535b8eSBarry Smith #if defined(PETSC_USE_DEBUG)
3497e7e72b3dSBarry Smith   else if (mat->insertmode != addv) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Cannot mix add values and insert values");
3498e32f2f54SBarry Smith   if (mat->factortype) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Not for factored matrix");
349985535b8eSBarry Smith #endif
350085535b8eSBarry Smith   if (mat->assembled) {
350185535b8eSBarry Smith     mat->was_assembled = PETSC_TRUE;
350285535b8eSBarry Smith     mat->assembled     = PETSC_FALSE;
350385535b8eSBarry Smith   }
350485535b8eSBarry Smith   ierr = PetscLogEventBegin(MAT_SetValues,mat,0,0,0);CHKERRQ(ierr);
350585535b8eSBarry Smith 
350685535b8eSBarry Smith 
350785535b8eSBarry Smith   if (!barray) {
3508785e854fSJed Brown     ierr         = PetscMalloc1(bs2,&barray);CHKERRQ(ierr);
350985535b8eSBarry Smith     baij->barray = barray;
351085535b8eSBarry Smith   }
351185535b8eSBarry Smith 
351226fbe8dcSKarl Rupp   if (roworiented) stepval = (n-1)*bs;
351326fbe8dcSKarl Rupp   else stepval = (m-1)*bs;
351426fbe8dcSKarl Rupp 
351585535b8eSBarry Smith   for (i=0; i<m; i++) {
351685535b8eSBarry Smith     if (im[i] < 0) continue;
351785535b8eSBarry Smith #if defined(PETSC_USE_DEBUG)
3518e32f2f54SBarry Smith     if (im[i] >= baij->Mbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large, row %D max %D",im[i],baij->Mbs-1);
351985535b8eSBarry Smith #endif
352085535b8eSBarry Smith     if (im[i] >= rstart && im[i] < rend) {
352185535b8eSBarry Smith       row = im[i] - rstart;
352285535b8eSBarry Smith       for (j=0; j<n; j++) {
352385535b8eSBarry Smith         /* If NumCol = 1 then a copy is not required */
352485535b8eSBarry Smith         if ((roworiented) && (n == 1)) {
352585535b8eSBarry Smith           barray = (MatScalar*)v + i*bs2;
352685535b8eSBarry Smith         } else if ((!roworiented) && (m == 1)) {
352785535b8eSBarry Smith           barray = (MatScalar*)v + j*bs2;
352885535b8eSBarry Smith         } else { /* Here a copy is required */
352985535b8eSBarry Smith           if (roworiented) {
353085535b8eSBarry Smith             value = v + i*(stepval+bs)*bs + j*bs;
353185535b8eSBarry Smith           } else {
353285535b8eSBarry Smith             value = v + j*(stepval+bs)*bs + i*bs;
353385535b8eSBarry Smith           }
353485535b8eSBarry Smith           for (ii=0; ii<bs; ii++,value+=stepval) {
353585535b8eSBarry Smith             for (jj=0; jj<bs; jj++) {
353685535b8eSBarry Smith               *barray++ = *value++;
353785535b8eSBarry Smith             }
353885535b8eSBarry Smith           }
353985535b8eSBarry Smith           barray -=bs2;
354085535b8eSBarry Smith         }
354185535b8eSBarry Smith 
354285535b8eSBarry Smith         if (in[j] >= cstart && in[j] < cend) {
354385535b8eSBarry Smith           col  = in[j] - cstart;
35448ab52850SBarry Smith           ierr = MatSetValuesBlocked_SeqBAIJ_Inlined(baij->A,row,col,barray,addv,im[i],in[j]);CHKERRQ(ierr);
354526fbe8dcSKarl Rupp         } else if (in[j] < 0) continue;
354685535b8eSBarry Smith #if defined(PETSC_USE_DEBUG)
3547cb9801acSJed Brown         else if (in[j] >= baij->Nbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large, col %D max %D",in[j],baij->Nbs-1);
354885535b8eSBarry Smith #endif
354985535b8eSBarry Smith         else {
355085535b8eSBarry Smith           if (mat->was_assembled) {
355185535b8eSBarry Smith             if (!baij->colmap) {
3552ab9863d7SBarry Smith               ierr = MatCreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
355385535b8eSBarry Smith             }
355485535b8eSBarry Smith 
355585535b8eSBarry Smith #if defined(PETSC_USE_DEBUG)
355685535b8eSBarry Smith #if defined(PETSC_USE_CTABLE)
355785535b8eSBarry Smith             { PetscInt data;
355885535b8eSBarry Smith               ierr = PetscTableFind(baij->colmap,in[j]+1,&data);CHKERRQ(ierr);
3559e32f2f54SBarry Smith               if ((data - 1) % bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap");
356085535b8eSBarry Smith             }
356185535b8eSBarry Smith #else
3562e32f2f54SBarry Smith             if ((baij->colmap[in[j]] - 1) % bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap");
356385535b8eSBarry Smith #endif
356485535b8eSBarry Smith #endif
356585535b8eSBarry Smith #if defined(PETSC_USE_CTABLE)
356685535b8eSBarry Smith             ierr = PetscTableFind(baij->colmap,in[j]+1,&col);CHKERRQ(ierr);
356785535b8eSBarry Smith             col  = (col - 1)/bs;
356885535b8eSBarry Smith #else
356985535b8eSBarry Smith             col = (baij->colmap[in[j]] - 1)/bs;
357085535b8eSBarry Smith #endif
357185535b8eSBarry Smith             if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) {
3572ab9863d7SBarry Smith               ierr = MatDisAssemble_MPIBAIJ(mat);CHKERRQ(ierr);
357385535b8eSBarry Smith               col  =  in[j];
357485535b8eSBarry Smith             }
357526fbe8dcSKarl Rupp           } else col = in[j];
35768ab52850SBarry Smith           ierr = MatSetValuesBlocked_SeqBAIJ_Inlined(baij->B,row,col,barray,addv,im[i],in[j]);CHKERRQ(ierr);
357785535b8eSBarry Smith         }
357885535b8eSBarry Smith       }
357985535b8eSBarry Smith     } else {
358085535b8eSBarry Smith       if (!baij->donotstash) {
358185535b8eSBarry Smith         if (roworiented) {
358285535b8eSBarry Smith           ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
358385535b8eSBarry Smith         } else {
358485535b8eSBarry Smith           ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
358585535b8eSBarry Smith         }
358685535b8eSBarry Smith       }
358785535b8eSBarry Smith     }
358885535b8eSBarry Smith   }
358985535b8eSBarry Smith 
359085535b8eSBarry Smith   /* task normally handled by MatSetValuesBlocked() */
359185535b8eSBarry Smith   ierr = PetscLogEventEnd(MAT_SetValues,mat,0,0,0);CHKERRQ(ierr);
359285535b8eSBarry Smith   PetscFunctionReturn(0);
359385535b8eSBarry Smith }
3594dfb205c3SBarry Smith 
3595dfb205c3SBarry Smith /*@
3596483a2f95SBarry Smith      MatCreateMPIBAIJWithArrays - creates a MPI BAIJ matrix using arrays that contain in standard block
3597dfb205c3SBarry Smith          CSR format the local rows.
3598dfb205c3SBarry Smith 
3599d083f849SBarry Smith    Collective
3600dfb205c3SBarry Smith 
3601dfb205c3SBarry Smith    Input Parameters:
3602dfb205c3SBarry Smith +  comm - MPI communicator
3603dfb205c3SBarry Smith .  bs - the block size, only a block size of 1 is supported
3604dfb205c3SBarry Smith .  m - number of local rows (Cannot be PETSC_DECIDE)
3605dfb205c3SBarry Smith .  n - This value should be the same as the local size used in creating the
3606dfb205c3SBarry Smith        x vector for the matrix-vector product y = Ax. (or PETSC_DECIDE to have
3607dfb205c3SBarry Smith        calculated if N is given) For square matrices n is almost always m.
3608dfb205c3SBarry Smith .  M - number of global rows (or PETSC_DETERMINE to have calculated if m is given)
3609dfb205c3SBarry Smith .  N - number of global columns (or PETSC_DETERMINE to have calculated if n is given)
3610483a2f95SBarry Smith .   i - row indices; that is i[0] = 0, i[row] = i[row-1] + number of block elements in that rowth block row of the matrix
3611dfb205c3SBarry Smith .   j - column indices
3612dfb205c3SBarry Smith -   a - matrix values
3613dfb205c3SBarry Smith 
3614dfb205c3SBarry Smith    Output Parameter:
3615dfb205c3SBarry Smith .   mat - the matrix
3616dfb205c3SBarry Smith 
3617dfb205c3SBarry Smith    Level: intermediate
3618dfb205c3SBarry Smith 
3619dfb205c3SBarry Smith    Notes:
3620dfb205c3SBarry Smith        The i, j, and a arrays ARE copied by this routine into the internal format used by PETSc;
3621dfb205c3SBarry Smith      thus you CANNOT change the matrix entries by changing the values of a[] after you have
3622dfb205c3SBarry Smith      called this routine. Use MatCreateMPIAIJWithSplitArrays() to avoid needing to copy the arrays.
3623dfb205c3SBarry Smith 
36243adadaf3SJed Brown      The order of the entries in values is the same as the block compressed sparse row storage format; that is, it is
36253adadaf3SJed Brown      the same as a three dimensional array in Fortran values(bs,bs,nnz) that contains the first column of the first
36263adadaf3SJed Brown      block, followed by the second column of the first block etc etc.  That is, the blocks are contiguous in memory
36273adadaf3SJed Brown      with column-major ordering within blocks.
36283adadaf3SJed Brown 
3629dfb205c3SBarry Smith        The i and j indices are 0 based, and i indices are indices corresponding to the local j array.
3630dfb205c3SBarry Smith 
3631dfb205c3SBarry Smith .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatMPIAIJSetPreallocation(), MatMPIAIJSetPreallocationCSR(),
363269b1f4b7SBarry Smith           MPIAIJ, MatCreateAIJ(), MatCreateMPIAIJWithSplitArrays()
3633dfb205c3SBarry Smith @*/
36347087cfbeSBarry Smith PetscErrorCode  MatCreateMPIBAIJWithArrays(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,const PetscInt i[],const PetscInt j[],const PetscScalar a[],Mat *mat)
3635dfb205c3SBarry Smith {
3636dfb205c3SBarry Smith   PetscErrorCode ierr;
3637dfb205c3SBarry Smith 
3638dfb205c3SBarry Smith   PetscFunctionBegin;
3639f23aa3ddSBarry Smith   if (i[0]) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"i (row indices) must start with 0");
3640dfb205c3SBarry Smith   if (m < 0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"local number of rows (m) cannot be PETSC_DECIDE, or negative");
3641dfb205c3SBarry Smith   ierr = MatCreate(comm,mat);CHKERRQ(ierr);
3642dfb205c3SBarry Smith   ierr = MatSetSizes(*mat,m,n,M,N);CHKERRQ(ierr);
36439a43d2d5SJed Brown   ierr = MatSetType(*mat,MATMPIBAIJ);CHKERRQ(ierr);
364427f91139SJed Brown   ierr = MatSetBlockSize(*mat,bs);CHKERRQ(ierr);
364527f91139SJed Brown   ierr = MatSetUp(*mat);CHKERRQ(ierr);
3646d47bf9aaSJed Brown   ierr = MatSetOption(*mat,MAT_ROW_ORIENTED,PETSC_FALSE);CHKERRQ(ierr);
3647dfb205c3SBarry Smith   ierr = MatMPIBAIJSetPreallocationCSR(*mat,bs,i,j,a);CHKERRQ(ierr);
3648d47bf9aaSJed Brown   ierr = MatSetOption(*mat,MAT_ROW_ORIENTED,PETSC_TRUE);CHKERRQ(ierr);
3649dfb205c3SBarry Smith   PetscFunctionReturn(0);
3650dfb205c3SBarry Smith }
3651e561ad89SHong Zhang 
3652bd153df0SHong Zhang PetscErrorCode MatCreateMPIMatConcatenateSeqMat_MPIBAIJ(MPI_Comm comm,Mat inmat,PetscInt n,MatReuse scall,Mat *outmat)
3653e561ad89SHong Zhang {
3654e561ad89SHong Zhang   PetscErrorCode ierr;
3655bd153df0SHong Zhang   PetscInt       m,N,i,rstart,nnz,Ii,bs,cbs;
3656bd153df0SHong Zhang   PetscInt       *indx;
3657bd153df0SHong Zhang   PetscScalar    *values;
3658e561ad89SHong Zhang 
3659e561ad89SHong Zhang   PetscFunctionBegin;
3660e561ad89SHong Zhang   ierr = MatGetSize(inmat,&m,&N);CHKERRQ(ierr);
3661bd153df0SHong Zhang   if (scall == MAT_INITIAL_MATRIX) { /* symbolic phase */
3662bd153df0SHong Zhang     Mat_SeqBAIJ    *a = (Mat_SeqBAIJ*)inmat->data;
36632c6ba4edSHong Zhang     PetscInt       *dnz,*onz,mbs,Nbs,nbs;
3664bd153df0SHong Zhang     PetscInt       *bindx,rmax=a->rmax,j;
366577f764caSHong Zhang     PetscMPIInt    rank,size;
3666e561ad89SHong Zhang 
3667bd153df0SHong Zhang     ierr = MatGetBlockSizes(inmat,&bs,&cbs);CHKERRQ(ierr);
3668bd153df0SHong Zhang     mbs = m/bs; Nbs = N/cbs;
3669bd153df0SHong Zhang     if (n == PETSC_DECIDE) {
3670da91a574SPierre Jolivet       ierr = PetscSplitOwnershipBlock(comm,cbs,&n,&N);
3671bd153df0SHong Zhang     }
3672da91a574SPierre Jolivet     nbs = n/cbs;
3673e561ad89SHong Zhang 
3674647a6520SHong Zhang     ierr = PetscMalloc1(rmax,&bindx);CHKERRQ(ierr);
367577f764caSHong Zhang     ierr = MatPreallocateInitialize(comm,mbs,nbs,dnz,onz);CHKERRQ(ierr); /* inline function, output __end and __rstart are used below */
367677f764caSHong Zhang 
367777f764caSHong Zhang     ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr);
367877f764caSHong Zhang     ierr = MPI_Comm_rank(comm,&size);CHKERRQ(ierr);
367977f764caSHong Zhang     if (rank == size-1) {
368077f764caSHong Zhang       /* Check sum(nbs) = Nbs */
36812c6ba4edSHong Zhang       if (__end != Nbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"Sum of local block columns %D != global block columns %D",__end,Nbs);
368277f764caSHong Zhang     }
368377f764caSHong Zhang 
368477f764caSHong Zhang     rstart = __rstart; /* block rstart of *outmat; see inline function MatPreallocateInitialize */
3685bd153df0SHong Zhang     for (i=0; i<mbs; i++) {
3686647a6520SHong Zhang       ierr = MatGetRow_SeqBAIJ(inmat,i*bs,&nnz,&indx,NULL);CHKERRQ(ierr); /* non-blocked nnz and indx */
3687647a6520SHong Zhang       nnz = nnz/bs;
3688647a6520SHong Zhang       for (j=0; j<nnz; j++) bindx[j] = indx[j*bs]/bs;
3689647a6520SHong Zhang       ierr = MatPreallocateSet(i+rstart,nnz,bindx,dnz,onz);CHKERRQ(ierr);
3690647a6520SHong Zhang       ierr = MatRestoreRow_SeqBAIJ(inmat,i*bs,&nnz,&indx,NULL);CHKERRQ(ierr);
3691e561ad89SHong Zhang     }
3692647a6520SHong Zhang     ierr = PetscFree(bindx);CHKERRQ(ierr);
3693e561ad89SHong Zhang 
3694e561ad89SHong Zhang     ierr = MatCreate(comm,outmat);CHKERRQ(ierr);
369577f764caSHong Zhang     ierr = MatSetSizes(*outmat,m,n,PETSC_DETERMINE,PETSC_DETERMINE);CHKERRQ(ierr);
3696e561ad89SHong Zhang     ierr = MatSetBlockSizes(*outmat,bs,cbs);CHKERRQ(ierr);
36978761c3d6SHong Zhang     ierr = MatSetType(*outmat,MATBAIJ);CHKERRQ(ierr);
36988761c3d6SHong Zhang     ierr = MatSeqBAIJSetPreallocation(*outmat,bs,0,dnz);CHKERRQ(ierr);
3699e561ad89SHong Zhang     ierr = MatMPIBAIJSetPreallocation(*outmat,bs,0,dnz,0,onz);CHKERRQ(ierr);
3700e561ad89SHong Zhang     ierr = MatPreallocateFinalize(dnz,onz);CHKERRQ(ierr);
3701e561ad89SHong Zhang   }
3702e561ad89SHong Zhang 
3703bd153df0SHong Zhang   /* numeric phase */
3704647a6520SHong Zhang   ierr = MatGetBlockSizes(inmat,&bs,&cbs);CHKERRQ(ierr);
3705bd153df0SHong Zhang   ierr = MatGetOwnershipRange(*outmat,&rstart,NULL);CHKERRQ(ierr);
3706e561ad89SHong Zhang 
3707e561ad89SHong Zhang   for (i=0; i<m; i++) {
3708e561ad89SHong Zhang     ierr = MatGetRow_SeqBAIJ(inmat,i,&nnz,&indx,&values);CHKERRQ(ierr);
3709e561ad89SHong Zhang     Ii   = i + rstart;
3710bd153df0SHong Zhang     ierr = MatSetValues(*outmat,1,&Ii,nnz,indx,values,INSERT_VALUES);CHKERRQ(ierr);
3711e561ad89SHong Zhang     ierr = MatRestoreRow_SeqBAIJ(inmat,i,&nnz,&indx,&values);CHKERRQ(ierr);
3712e561ad89SHong Zhang   }
3713bd153df0SHong Zhang   ierr = MatAssemblyBegin(*outmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
3714bd153df0SHong Zhang   ierr = MatAssemblyEnd(*outmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
3715e561ad89SHong Zhang   PetscFunctionReturn(0);
3716e561ad89SHong Zhang }
3717