179bdfe76SSatish Balay #ifndef lint 2*639f9d9dSBarry Smith static char vcid[] = "$Id: mpibaij.c,v 1.27 1996/09/24 20:24:28 bsmith Exp bsmith $"; 379bdfe76SSatish Balay #endif 479bdfe76SSatish Balay 570f55243SBarry Smith #include "src/mat/impls/baij/mpi/mpibaij.h" 6c16cb8f2SBarry Smith #include "src/vec/vecimpl.h" 779bdfe76SSatish Balay 857b952d6SSatish Balay #include "draw.h" 957b952d6SSatish Balay #include "pinclude/pviewer.h" 1057b952d6SSatish Balay 1157b952d6SSatish Balay extern int MatSetUpMultiply_MPIBAIJ(Mat); 1257b952d6SSatish Balay extern int DisAssemble_MPIBAIJ(Mat); 13d212a18eSSatish Balay extern int MatIncreaseOverlap_MPIBAIJ(Mat,int,IS *,int); 14d212a18eSSatish Balay extern int MatGetSubMatrices_MPIBAIJ(Mat,int,IS *,IS *,MatGetSubMatrixCall,Mat **); 1593bc47c4SSatish Balay extern int MatLUFactorSymbolic_MPIBAIJ(Mat,IS,IS,double,Mat *); 1693bc47c4SSatish Balay extern int MatLUFactorNumeric_MPIBAIJ(Mat,Mat *); 1793bc47c4SSatish Balay extern int MatLUFactor_MPIBAIJ(Mat,IS,IS,double); 1893bc47c4SSatish Balay extern int MatSolve_MPIBAIJ(Mat,Vec,Vec); 1993bc47c4SSatish Balay extern int MatSolveAdd_MPIBAIJ(Mat,Vec,Vec,Vec); 2093bc47c4SSatish Balay extern int MatSolveTrans_MPIBAIJ(Mat,Vec,Vec); 2193bc47c4SSatish Balay extern int MatSolveTransAdd_MPIBAIJ(Mat,Vec,Vec,Vec); 2293bc47c4SSatish Balay extern int MatILUFactorSymbolic_MPIBAIJ(Mat,IS,IS,double,int,Mat *); 2357b952d6SSatish Balay 243b2fbd54SBarry Smith 25537820f0SBarry Smith /* 26537820f0SBarry Smith Local utility routine that creates a mapping from the global column 2757b952d6SSatish Balay number to the local number in the off-diagonal part of the local 2857b952d6SSatish Balay storage of the matrix. This is done in a non scable way since the 2957b952d6SSatish Balay length of colmap equals the global matrix length. 3057b952d6SSatish Balay */ 3157b952d6SSatish Balay static int CreateColmap_MPIBAIJ_Private(Mat mat) 3257b952d6SSatish Balay { 3357b952d6SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *) mat->data; 3457b952d6SSatish Balay Mat_SeqBAIJ *B = (Mat_SeqBAIJ*) baij->B->data; 3557b952d6SSatish Balay int nbs = B->nbs,i; 3657b952d6SSatish Balay 3757b952d6SSatish Balay baij->colmap = (int *) PetscMalloc(baij->Nbs*sizeof(int));CHKPTRQ(baij->colmap); 3857b952d6SSatish Balay PLogObjectMemory(mat,baij->Nbs*sizeof(int)); 3957b952d6SSatish Balay PetscMemzero(baij->colmap,baij->Nbs*sizeof(int)); 40905e6a2fSBarry Smith for ( i=0; i<nbs; i++ ) baij->colmap[baij->garray[i]] = i + 1; 4157b952d6SSatish Balay return 0; 4257b952d6SSatish Balay } 4357b952d6SSatish Balay 443b2fbd54SBarry Smith static int MatGetRowIJ_MPIBAIJ(Mat mat,int shift,PetscTruth symmetric,int *n,int **ia,int **ja, 453b2fbd54SBarry Smith PetscTruth *done) 4657b952d6SSatish Balay { 473b2fbd54SBarry Smith Mat_MPIBAIJ *aij = (Mat_MPIBAIJ *) mat->data; 4857b952d6SSatish Balay int ierr; 493b2fbd54SBarry Smith if (aij->size == 1) { 503b2fbd54SBarry Smith ierr = MatGetRowIJ(aij->A,shift,symmetric,n,ia,ja,done); CHKERRQ(ierr); 513b2fbd54SBarry Smith } else SETERRQ(1,"MatGetRowIJ_MPIBAIJ:not supported in parallel"); 523b2fbd54SBarry Smith return 0; 533b2fbd54SBarry Smith } 543b2fbd54SBarry Smith 553b2fbd54SBarry Smith static int MatRestoreRowIJ_MPIBAIJ(Mat mat,int shift,PetscTruth symmetric,int *n,int **ia,int **ja, 563b2fbd54SBarry Smith PetscTruth *done) 573b2fbd54SBarry Smith { 583b2fbd54SBarry Smith Mat_MPIBAIJ *aij = (Mat_MPIBAIJ *) mat->data; 593b2fbd54SBarry Smith int ierr; 603b2fbd54SBarry Smith if (aij->size == 1) { 613b2fbd54SBarry Smith ierr = MatRestoreRowIJ(aij->A,shift,symmetric,n,ia,ja,done); CHKERRQ(ierr); 623b2fbd54SBarry Smith } else SETERRQ(1,"MatRestoreRowIJ_MPIBAIJ:not supported in parallel"); 6357b952d6SSatish Balay return 0; 6457b952d6SSatish Balay } 6557b952d6SSatish Balay 66*639f9d9dSBarry Smith extern int MatSetValues_SeqBAIJ(Mat,int,int*,int,int*,Scalar*,InsertMode); 6757b952d6SSatish Balay static int MatSetValues_MPIBAIJ(Mat mat,int m,int *im,int n,int *in,Scalar *v,InsertMode addv) 6857b952d6SSatish Balay { 6957b952d6SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *) mat->data; 7057b952d6SSatish Balay Scalar value; 7157b952d6SSatish Balay int ierr,i,j, rstart = baij->rstart, rend = baij->rend; 7257b952d6SSatish Balay int cstart = baij->cstart, cend = baij->cend,row,col; 7357b952d6SSatish Balay int roworiented = baij->roworiented,rstart_orig,rend_orig; 7457b952d6SSatish Balay int cstart_orig,cend_orig,bs=baij->bs; 7557b952d6SSatish Balay 7657b952d6SSatish Balay if (baij->insertmode != NOT_SET_VALUES && baij->insertmode != addv) { 7757b952d6SSatish Balay SETERRQ(1,"MatSetValues_MPIBAIJ:Cannot mix inserts and adds"); 7857b952d6SSatish Balay } 7957b952d6SSatish Balay baij->insertmode = addv; 8057b952d6SSatish Balay rstart_orig = rstart*bs; 8157b952d6SSatish Balay rend_orig = rend*bs; 8257b952d6SSatish Balay cstart_orig = cstart*bs; 8357b952d6SSatish Balay cend_orig = cend*bs; 8457b952d6SSatish Balay for ( i=0; i<m; i++ ) { 85*639f9d9dSBarry Smith #if defined(PETSC_BOPT_g) 8657b952d6SSatish Balay if (im[i] < 0) SETERRQ(1,"MatSetValues_MPIBAIJ:Negative row"); 8757b952d6SSatish Balay if (im[i] >= baij->M) SETERRQ(1,"MatSetValues_MPIBAIJ:Row too large"); 88*639f9d9dSBarry Smith #endif 8957b952d6SSatish Balay if (im[i] >= rstart_orig && im[i] < rend_orig) { 9057b952d6SSatish Balay row = im[i] - rstart_orig; 9157b952d6SSatish Balay for ( j=0; j<n; j++ ) { 9257b952d6SSatish Balay if (in[j] >= cstart_orig && in[j] < cend_orig){ 9357b952d6SSatish Balay col = in[j] - cstart_orig; 9457b952d6SSatish Balay if (roworiented) value = v[i*n+j]; else value = v[i+j*m]; 95*639f9d9dSBarry Smith ierr = MatSetValues_SeqBAIJ(baij->A,1,&row,1,&col,&value,addv);CHKERRQ(ierr); 9657b952d6SSatish Balay } 97*639f9d9dSBarry Smith #if defined(PETSC_BOPT_g) 98*639f9d9dSBarry Smith else if (in[j] < 0) {SETERRQ(1,"MatSetValues_MPIBAIJ:Negative column");} 99*639f9d9dSBarry Smith else if (in[j] >= baij->N) {SETERRQ(1,"MatSetValues_MPIBAIJ:Col too large");} 100*639f9d9dSBarry Smith #endif 10157b952d6SSatish Balay else { 10257b952d6SSatish Balay if (mat->was_assembled) { 103905e6a2fSBarry Smith if (!baij->colmap) { 104905e6a2fSBarry Smith ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 105905e6a2fSBarry Smith } 106905e6a2fSBarry Smith col = baij->colmap[in[j]/bs] - 1 + in[j]%bs; 10757b952d6SSatish Balay if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) { 10857b952d6SSatish Balay ierr = DisAssemble_MPIBAIJ(mat); CHKERRQ(ierr); 10957b952d6SSatish Balay col = in[j]; 11057b952d6SSatish Balay } 11157b952d6SSatish Balay } 11257b952d6SSatish Balay else col = in[j]; 11357b952d6SSatish Balay if (roworiented) value = v[i*n+j]; else value = v[i+j*m]; 114*639f9d9dSBarry Smith ierr = MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv);CHKERRQ(ierr); 11557b952d6SSatish Balay } 11657b952d6SSatish Balay } 11757b952d6SSatish Balay } 11857b952d6SSatish Balay else { 11957b952d6SSatish Balay if (roworiented) { 12057b952d6SSatish Balay ierr = StashValues_Private(&baij->stash,im[i],n,in,v+i*n,addv);CHKERRQ(ierr); 12157b952d6SSatish Balay } 12257b952d6SSatish Balay else { 12357b952d6SSatish Balay row = im[i]; 12457b952d6SSatish Balay for ( j=0; j<n; j++ ) { 12557b952d6SSatish Balay ierr = StashValues_Private(&baij->stash,row,1,in+j,v+i+j*m,addv);CHKERRQ(ierr); 12657b952d6SSatish Balay } 12757b952d6SSatish Balay } 12857b952d6SSatish Balay } 12957b952d6SSatish Balay } 13057b952d6SSatish Balay return 0; 13157b952d6SSatish Balay } 13257b952d6SSatish Balay 133d6de1c52SSatish Balay static int MatGetValues_MPIBAIJ(Mat mat,int m,int *idxm,int n,int *idxn,Scalar *v) 134d6de1c52SSatish Balay { 135d6de1c52SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *) mat->data; 136d6de1c52SSatish Balay int bs=baij->bs,ierr,i,j, bsrstart = baij->rstart*bs, bsrend = baij->rend*bs; 137d6de1c52SSatish Balay int bscstart = baij->cstart*bs, bscend = baij->cend*bs,row,col; 138d6de1c52SSatish Balay 139d6de1c52SSatish Balay for ( i=0; i<m; i++ ) { 140d6de1c52SSatish Balay if (idxm[i] < 0) SETERRQ(1,"MatGetValues_MPIBAIJ:Negative row"); 141d6de1c52SSatish Balay if (idxm[i] >= baij->M) SETERRQ(1,"MatGetValues_MPIBAIJ:Row too large"); 142d6de1c52SSatish Balay if (idxm[i] >= bsrstart && idxm[i] < bsrend) { 143d6de1c52SSatish Balay row = idxm[i] - bsrstart; 144d6de1c52SSatish Balay for ( j=0; j<n; j++ ) { 145d6de1c52SSatish Balay if (idxn[j] < 0) SETERRQ(1,"MatGetValues_MPIBAIJ:Negative column"); 146d6de1c52SSatish Balay if (idxn[j] >= baij->N) SETERRQ(1,"MatGetValues_MPIBAIJ:Col too large"); 147d6de1c52SSatish Balay if (idxn[j] >= bscstart && idxn[j] < bscend){ 148d6de1c52SSatish Balay col = idxn[j] - bscstart; 149d6de1c52SSatish Balay ierr = MatGetValues(baij->A,1,&row,1,&col,v+i*n+j); CHKERRQ(ierr); 150d6de1c52SSatish Balay } 151d6de1c52SSatish Balay else { 152905e6a2fSBarry Smith if (!baij->colmap) { 153905e6a2fSBarry Smith ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 154905e6a2fSBarry Smith } 155e60e1c95SSatish Balay if((baij->colmap[idxn[j]/bs]-1 < 0) || 156e60e1c95SSatish Balay (baij->garray[baij->colmap[idxn[j]/bs]-1] != idxn[j]/bs)) *(v+i*n+j) = 0.0; 157d9d09a02SSatish Balay else { 158905e6a2fSBarry Smith col = (baij->colmap[idxn[j]/bs]-1)*bs + idxn[j]%bs; 159d6de1c52SSatish Balay ierr = MatGetValues(baij->B,1,&row,1,&col,v+i*n+j); CHKERRQ(ierr); 160d6de1c52SSatish Balay } 161d6de1c52SSatish Balay } 162d6de1c52SSatish Balay } 163d9d09a02SSatish Balay } 164d6de1c52SSatish Balay else { 165d6de1c52SSatish Balay SETERRQ(1,"MatGetValues_MPIBAIJ:Only local values currently supported"); 166d6de1c52SSatish Balay } 167d6de1c52SSatish Balay } 168d6de1c52SSatish Balay return 0; 169d6de1c52SSatish Balay } 170d6de1c52SSatish Balay 171d6de1c52SSatish Balay static int MatNorm_MPIBAIJ(Mat mat,NormType type,double *norm) 172d6de1c52SSatish Balay { 173d6de1c52SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *) mat->data; 174d6de1c52SSatish Balay Mat_SeqBAIJ *amat = (Mat_SeqBAIJ*) baij->A->data, *bmat = (Mat_SeqBAIJ*) baij->B->data; 175acdf5bf4SSatish Balay int ierr, i,bs2=baij->bs2; 176d6de1c52SSatish Balay double sum = 0.0; 177d6de1c52SSatish Balay Scalar *v; 178d6de1c52SSatish Balay 179d6de1c52SSatish Balay if (baij->size == 1) { 180d6de1c52SSatish Balay ierr = MatNorm(baij->A,type,norm); CHKERRQ(ierr); 181d6de1c52SSatish Balay } else { 182d6de1c52SSatish Balay if (type == NORM_FROBENIUS) { 183d6de1c52SSatish Balay v = amat->a; 184d6de1c52SSatish Balay for (i=0; i<amat->nz*bs2; i++ ) { 185d6de1c52SSatish Balay #if defined(PETSC_COMPLEX) 186d6de1c52SSatish Balay sum += real(conj(*v)*(*v)); v++; 187d6de1c52SSatish Balay #else 188d6de1c52SSatish Balay sum += (*v)*(*v); v++; 189d6de1c52SSatish Balay #endif 190d6de1c52SSatish Balay } 191d6de1c52SSatish Balay v = bmat->a; 192d6de1c52SSatish Balay for (i=0; i<bmat->nz*bs2; i++ ) { 193d6de1c52SSatish Balay #if defined(PETSC_COMPLEX) 194d6de1c52SSatish Balay sum += real(conj(*v)*(*v)); v++; 195d6de1c52SSatish Balay #else 196d6de1c52SSatish Balay sum += (*v)*(*v); v++; 197d6de1c52SSatish Balay #endif 198d6de1c52SSatish Balay } 199d6de1c52SSatish Balay MPI_Allreduce(&sum,norm,1,MPI_DOUBLE,MPI_SUM,mat->comm); 200d6de1c52SSatish Balay *norm = sqrt(*norm); 201d6de1c52SSatish Balay } 202acdf5bf4SSatish Balay else 203acdf5bf4SSatish Balay SETERRQ(1,"MatNorm_SeqBAIJ:No support for this norm yet"); 204d6de1c52SSatish Balay } 205d6de1c52SSatish Balay return 0; 206d6de1c52SSatish Balay } 20757b952d6SSatish Balay 20857b952d6SSatish Balay static int MatAssemblyBegin_MPIBAIJ(Mat mat,MatAssemblyType mode) 20957b952d6SSatish Balay { 21057b952d6SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *) mat->data; 21157b952d6SSatish Balay MPI_Comm comm = mat->comm; 21257b952d6SSatish Balay int size = baij->size, *owners = baij->rowners,bs=baij->bs; 21357b952d6SSatish Balay int rank = baij->rank,tag = mat->tag, *owner,*starts,count,ierr; 21457b952d6SSatish Balay MPI_Request *send_waits,*recv_waits; 21557b952d6SSatish Balay int *nprocs,i,j,idx,*procs,nsends,nreceives,nmax,*work; 21657b952d6SSatish Balay InsertMode addv; 21757b952d6SSatish Balay Scalar *rvalues,*svalues; 21857b952d6SSatish Balay 21957b952d6SSatish Balay /* make sure all processors are either in INSERTMODE or ADDMODE */ 22057b952d6SSatish Balay MPI_Allreduce(&baij->insertmode,&addv,1,MPI_INT,MPI_BOR,comm); 22157b952d6SSatish Balay if (addv == (ADD_VALUES|INSERT_VALUES)) { 22257b952d6SSatish Balay SETERRQ(1,"MatAssemblyBegin_MPIBAIJ:Some processors inserted others added"); 22357b952d6SSatish Balay } 22457b952d6SSatish Balay baij->insertmode = addv; /* in case this processor had no cache */ 22557b952d6SSatish Balay 22657b952d6SSatish Balay /* first count number of contributors to each processor */ 22757b952d6SSatish Balay nprocs = (int *) PetscMalloc( 2*size*sizeof(int) ); CHKPTRQ(nprocs); 22857b952d6SSatish Balay PetscMemzero(nprocs,2*size*sizeof(int)); procs = nprocs + size; 22957b952d6SSatish Balay owner = (int *) PetscMalloc( (baij->stash.n+1)*sizeof(int) ); CHKPTRQ(owner); 23057b952d6SSatish Balay for ( i=0; i<baij->stash.n; i++ ) { 23157b952d6SSatish Balay idx = baij->stash.idx[i]; 23257b952d6SSatish Balay for ( j=0; j<size; j++ ) { 23357b952d6SSatish Balay if (idx >= owners[j]*bs && idx < owners[j+1]*bs) { 23457b952d6SSatish Balay nprocs[j]++; procs[j] = 1; owner[i] = j; break; 23557b952d6SSatish Balay } 23657b952d6SSatish Balay } 23757b952d6SSatish Balay } 23857b952d6SSatish Balay nsends = 0; for ( i=0; i<size; i++ ) { nsends += procs[i];} 23957b952d6SSatish Balay 24057b952d6SSatish Balay /* inform other processors of number of messages and max length*/ 24157b952d6SSatish Balay work = (int *) PetscMalloc( size*sizeof(int) ); CHKPTRQ(work); 24257b952d6SSatish Balay MPI_Allreduce(procs, work,size,MPI_INT,MPI_SUM,comm); 24357b952d6SSatish Balay nreceives = work[rank]; 24457b952d6SSatish Balay MPI_Allreduce( nprocs, work,size,MPI_INT,MPI_MAX,comm); 24557b952d6SSatish Balay nmax = work[rank]; 24657b952d6SSatish Balay PetscFree(work); 24757b952d6SSatish Balay 24857b952d6SSatish Balay /* post receives: 24957b952d6SSatish Balay 1) each message will consist of ordered pairs 25057b952d6SSatish Balay (global index,value) we store the global index as a double 25157b952d6SSatish Balay to simplify the message passing. 25257b952d6SSatish Balay 2) since we don't know how long each individual message is we 25357b952d6SSatish Balay allocate the largest needed buffer for each receive. Potentially 25457b952d6SSatish Balay this is a lot of wasted space. 25557b952d6SSatish Balay 25657b952d6SSatish Balay 25757b952d6SSatish Balay This could be done better. 25857b952d6SSatish Balay */ 25957b952d6SSatish Balay rvalues = (Scalar *) PetscMalloc(3*(nreceives+1)*(nmax+1)*sizeof(Scalar)); 26057b952d6SSatish Balay CHKPTRQ(rvalues); 26157b952d6SSatish Balay recv_waits = (MPI_Request *) PetscMalloc((nreceives+1)*sizeof(MPI_Request)); 26257b952d6SSatish Balay CHKPTRQ(recv_waits); 26357b952d6SSatish Balay for ( i=0; i<nreceives; i++ ) { 26457b952d6SSatish Balay MPI_Irecv(rvalues+3*nmax*i,3*nmax,MPIU_SCALAR,MPI_ANY_SOURCE,tag, 26557b952d6SSatish Balay comm,recv_waits+i); 26657b952d6SSatish Balay } 26757b952d6SSatish Balay 26857b952d6SSatish Balay /* do sends: 26957b952d6SSatish Balay 1) starts[i] gives the starting index in svalues for stuff going to 27057b952d6SSatish Balay the ith processor 27157b952d6SSatish Balay */ 27257b952d6SSatish Balay svalues = (Scalar *) PetscMalloc(3*(baij->stash.n+1)*sizeof(Scalar));CHKPTRQ(svalues); 27357b952d6SSatish Balay send_waits = (MPI_Request *) PetscMalloc( (nsends+1)*sizeof(MPI_Request)); 27457b952d6SSatish Balay CHKPTRQ(send_waits); 27557b952d6SSatish Balay starts = (int *) PetscMalloc( size*sizeof(int) ); CHKPTRQ(starts); 27657b952d6SSatish Balay starts[0] = 0; 27757b952d6SSatish Balay for ( i=1; i<size; i++ ) { starts[i] = starts[i-1] + nprocs[i-1];} 27857b952d6SSatish Balay for ( i=0; i<baij->stash.n; i++ ) { 27957b952d6SSatish Balay svalues[3*starts[owner[i]]] = (Scalar) baij->stash.idx[i]; 28057b952d6SSatish Balay svalues[3*starts[owner[i]]+1] = (Scalar) baij->stash.idy[i]; 28157b952d6SSatish Balay svalues[3*(starts[owner[i]]++)+2] = baij->stash.array[i]; 28257b952d6SSatish Balay } 28357b952d6SSatish Balay PetscFree(owner); 28457b952d6SSatish Balay starts[0] = 0; 28557b952d6SSatish Balay for ( i=1; i<size; i++ ) { starts[i] = starts[i-1] + nprocs[i-1];} 28657b952d6SSatish Balay count = 0; 28757b952d6SSatish Balay for ( i=0; i<size; i++ ) { 28857b952d6SSatish Balay if (procs[i]) { 28957b952d6SSatish Balay MPI_Isend(svalues+3*starts[i],3*nprocs[i],MPIU_SCALAR,i,tag, 29057b952d6SSatish Balay comm,send_waits+count++); 29157b952d6SSatish Balay } 29257b952d6SSatish Balay } 29357b952d6SSatish Balay PetscFree(starts); PetscFree(nprocs); 29457b952d6SSatish Balay 29557b952d6SSatish Balay /* Free cache space */ 29657b952d6SSatish Balay PLogInfo(0,"[%d]MatAssemblyBegin_MPIBAIJ:Number of off processor values %d\n",rank,baij->stash.n); 29757b952d6SSatish Balay ierr = StashDestroy_Private(&baij->stash); CHKERRQ(ierr); 29857b952d6SSatish Balay 29957b952d6SSatish Balay baij->svalues = svalues; baij->rvalues = rvalues; 30057b952d6SSatish Balay baij->nsends = nsends; baij->nrecvs = nreceives; 30157b952d6SSatish Balay baij->send_waits = send_waits; baij->recv_waits = recv_waits; 30257b952d6SSatish Balay baij->rmax = nmax; 30357b952d6SSatish Balay 30457b952d6SSatish Balay return 0; 30557b952d6SSatish Balay } 30657b952d6SSatish Balay 30757b952d6SSatish Balay 30857b952d6SSatish Balay static int MatAssemblyEnd_MPIBAIJ(Mat mat,MatAssemblyType mode) 30957b952d6SSatish Balay { 31057b952d6SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *) mat->data; 31157b952d6SSatish Balay MPI_Status *send_status,recv_status; 31257b952d6SSatish Balay int imdex,nrecvs = baij->nrecvs, count = nrecvs, i, n, ierr; 31357b952d6SSatish Balay int bs=baij->bs,row,col,other_disassembled; 31457b952d6SSatish Balay Scalar *values,val; 31557b952d6SSatish Balay InsertMode addv = baij->insertmode; 31657b952d6SSatish Balay 31757b952d6SSatish Balay /* wait on receives */ 31857b952d6SSatish Balay while (count) { 31957b952d6SSatish Balay MPI_Waitany(nrecvs,baij->recv_waits,&imdex,&recv_status); 32057b952d6SSatish Balay /* unpack receives into our local space */ 32157b952d6SSatish Balay values = baij->rvalues + 3*imdex*baij->rmax; 32257b952d6SSatish Balay MPI_Get_count(&recv_status,MPIU_SCALAR,&n); 32357b952d6SSatish Balay n = n/3; 32457b952d6SSatish Balay for ( i=0; i<n; i++ ) { 32557b952d6SSatish Balay row = (int) PetscReal(values[3*i]) - baij->rstart*bs; 32657b952d6SSatish Balay col = (int) PetscReal(values[3*i+1]); 32757b952d6SSatish Balay val = values[3*i+2]; 32857b952d6SSatish Balay if (col >= baij->cstart*bs && col < baij->cend*bs) { 32957b952d6SSatish Balay col -= baij->cstart*bs; 33057b952d6SSatish Balay MatSetValues(baij->A,1,&row,1,&col,&val,addv); 33157b952d6SSatish Balay } 33257b952d6SSatish Balay else { 33357b952d6SSatish Balay if (mat->was_assembled) { 334905e6a2fSBarry Smith if (!baij->colmap) { 335905e6a2fSBarry Smith ierr = CreateColmap_MPIBAIJ_Private(mat); CHKERRQ(ierr); 336905e6a2fSBarry Smith } 337905e6a2fSBarry Smith col = (baij->colmap[col/bs]-1)*bs + col%bs; 33857b952d6SSatish Balay if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) { 33957b952d6SSatish Balay ierr = DisAssemble_MPIBAIJ(mat); CHKERRQ(ierr); 34057b952d6SSatish Balay col = (int) PetscReal(values[3*i+1]); 34157b952d6SSatish Balay } 34257b952d6SSatish Balay } 34357b952d6SSatish Balay MatSetValues(baij->B,1,&row,1,&col,&val,addv); 34457b952d6SSatish Balay } 34557b952d6SSatish Balay } 34657b952d6SSatish Balay count--; 34757b952d6SSatish Balay } 34857b952d6SSatish Balay PetscFree(baij->recv_waits); PetscFree(baij->rvalues); 34957b952d6SSatish Balay 35057b952d6SSatish Balay /* wait on sends */ 35157b952d6SSatish Balay if (baij->nsends) { 35257b952d6SSatish Balay send_status = (MPI_Status *) PetscMalloc(baij->nsends*sizeof(MPI_Status)); 35357b952d6SSatish Balay CHKPTRQ(send_status); 35457b952d6SSatish Balay MPI_Waitall(baij->nsends,baij->send_waits,send_status); 35557b952d6SSatish Balay PetscFree(send_status); 35657b952d6SSatish Balay } 35757b952d6SSatish Balay PetscFree(baij->send_waits); PetscFree(baij->svalues); 35857b952d6SSatish Balay 35957b952d6SSatish Balay baij->insertmode = NOT_SET_VALUES; 36057b952d6SSatish Balay ierr = MatAssemblyBegin(baij->A,mode); CHKERRQ(ierr); 36157b952d6SSatish Balay ierr = MatAssemblyEnd(baij->A,mode); CHKERRQ(ierr); 36257b952d6SSatish Balay 36357b952d6SSatish Balay /* determine if any processor has disassembled, if so we must 36457b952d6SSatish Balay also disassemble ourselfs, in order that we may reassemble. */ 36557b952d6SSatish Balay MPI_Allreduce(&mat->was_assembled,&other_disassembled,1,MPI_INT,MPI_PROD,mat->comm); 36657b952d6SSatish Balay if (mat->was_assembled && !other_disassembled) { 36757b952d6SSatish Balay ierr = DisAssemble_MPIBAIJ(mat); CHKERRQ(ierr); 36857b952d6SSatish Balay } 36957b952d6SSatish Balay 3706d4a8577SBarry Smith if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) { 37157b952d6SSatish Balay ierr = MatSetUpMultiply_MPIBAIJ(mat); CHKERRQ(ierr); 37257b952d6SSatish Balay } 37357b952d6SSatish Balay ierr = MatAssemblyBegin(baij->B,mode); CHKERRQ(ierr); 37457b952d6SSatish Balay ierr = MatAssemblyEnd(baij->B,mode); CHKERRQ(ierr); 37557b952d6SSatish Balay 37657b952d6SSatish Balay if (baij->rowvalues) {PetscFree(baij->rowvalues); baij->rowvalues = 0;} 37757b952d6SSatish Balay return 0; 37857b952d6SSatish Balay } 37957b952d6SSatish Balay 38057b952d6SSatish Balay static int MatView_MPIBAIJ_Binary(Mat mat,Viewer viewer) 38157b952d6SSatish Balay { 38257b952d6SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *) mat->data; 38357b952d6SSatish Balay int ierr; 38457b952d6SSatish Balay 38557b952d6SSatish Balay if (baij->size == 1) { 38657b952d6SSatish Balay ierr = MatView(baij->A,viewer); CHKERRQ(ierr); 38757b952d6SSatish Balay } 38857b952d6SSatish Balay else SETERRQ(1,"MatView_MPIBAIJ_Binary:Only uniprocessor output supported"); 38957b952d6SSatish Balay return 0; 39057b952d6SSatish Balay } 39157b952d6SSatish Balay 39257b952d6SSatish Balay static int MatView_MPIBAIJ_ASCIIorDraworMatlab(Mat mat,Viewer viewer) 39357b952d6SSatish Balay { 39457b952d6SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *) mat->data; 395cee3aa6bSSatish Balay int ierr, format,rank,bs=baij->bs; 39657b952d6SSatish Balay FILE *fd; 39757b952d6SSatish Balay ViewerType vtype; 39857b952d6SSatish Balay 39957b952d6SSatish Balay ierr = ViewerGetType(viewer,&vtype); CHKERRQ(ierr); 40057b952d6SSatish Balay if (vtype == ASCII_FILES_VIEWER || vtype == ASCII_FILE_VIEWER) { 40157b952d6SSatish Balay ierr = ViewerGetFormat(viewer,&format); 402*639f9d9dSBarry Smith if (format == VIEWER_FORMAT_ASCII_INFO_LONG) { 4034e220ebcSLois Curfman McInnes MatInfo info; 40457b952d6SSatish Balay MPI_Comm_rank(mat->comm,&rank); 40557b952d6SSatish Balay ierr = ViewerASCIIGetPointer(viewer,&fd); CHKERRQ(ierr); 4064e220ebcSLois Curfman McInnes ierr = MatGetInfo(mat,MAT_LOCAL,&info); 40757b952d6SSatish Balay PetscSequentialPhaseBegin(mat->comm,1); 40857b952d6SSatish Balay fprintf(fd,"[%d] Local rows %d nz %d nz alloced %d bs %d mem %d\n", 4094e220ebcSLois Curfman McInnes rank,baij->m,(int)info.nz_used*bs,(int)info.nz_allocated*bs, 4104e220ebcSLois Curfman McInnes baij->bs,(int)info.memory); 4114e220ebcSLois Curfman McInnes ierr = MatGetInfo(baij->A,MAT_LOCAL,&info); 4124e220ebcSLois Curfman McInnes fprintf(fd,"[%d] on-diagonal part: nz %d \n",rank,(int)info.nz_used*bs); 4134e220ebcSLois Curfman McInnes ierr = MatGetInfo(baij->B,MAT_LOCAL,&info); 4144e220ebcSLois Curfman McInnes fprintf(fd,"[%d] off-diagonal part: nz %d \n",rank,(int)info.nz_used*bs); 41557b952d6SSatish Balay fflush(fd); 41657b952d6SSatish Balay PetscSequentialPhaseEnd(mat->comm,1); 41757b952d6SSatish Balay ierr = VecScatterView(baij->Mvctx,viewer); CHKERRQ(ierr); 41857b952d6SSatish Balay return 0; 41957b952d6SSatish Balay } 420*639f9d9dSBarry Smith else if (format == VIEWER_FORMAT_ASCII_INFO) { 42157b952d6SSatish Balay return 0; 42257b952d6SSatish Balay } 42357b952d6SSatish Balay } 42457b952d6SSatish Balay 42557b952d6SSatish Balay if (vtype == DRAW_VIEWER) { 42657b952d6SSatish Balay Draw draw; 42757b952d6SSatish Balay PetscTruth isnull; 42857b952d6SSatish Balay ierr = ViewerDrawGetDraw(viewer,&draw); CHKERRQ(ierr); 42957b952d6SSatish Balay ierr = DrawIsNull(draw,&isnull); CHKERRQ(ierr); if (isnull) return 0; 43057b952d6SSatish Balay } 43157b952d6SSatish Balay 43257b952d6SSatish Balay if (vtype == ASCII_FILE_VIEWER) { 43357b952d6SSatish Balay ierr = ViewerASCIIGetPointer(viewer,&fd); CHKERRQ(ierr); 43457b952d6SSatish Balay PetscSequentialPhaseBegin(mat->comm,1); 43557b952d6SSatish Balay fprintf(fd,"[%d] rows %d starts %d ends %d cols %d starts %d ends %d\n", 43657b952d6SSatish Balay baij->rank,baij->m,baij->rstart*bs,baij->rend*bs,baij->n, 43757b952d6SSatish Balay baij->cstart*bs,baij->cend*bs); 43857b952d6SSatish Balay ierr = MatView(baij->A,viewer); CHKERRQ(ierr); 43957b952d6SSatish Balay ierr = MatView(baij->B,viewer); CHKERRQ(ierr); 44057b952d6SSatish Balay fflush(fd); 44157b952d6SSatish Balay PetscSequentialPhaseEnd(mat->comm,1); 44257b952d6SSatish Balay } 44357b952d6SSatish Balay else { 44457b952d6SSatish Balay int size = baij->size; 44557b952d6SSatish Balay rank = baij->rank; 44657b952d6SSatish Balay if (size == 1) { 44757b952d6SSatish Balay ierr = MatView(baij->A,viewer); CHKERRQ(ierr); 44857b952d6SSatish Balay } 44957b952d6SSatish Balay else { 45057b952d6SSatish Balay /* assemble the entire matrix onto first processor. */ 45157b952d6SSatish Balay Mat A; 45257b952d6SSatish Balay Mat_SeqBAIJ *Aloc; 45357b952d6SSatish Balay int M = baij->M, N = baij->N,*ai,*aj,row,col,i,j,k,*rvals; 45457b952d6SSatish Balay int mbs=baij->mbs; 45557b952d6SSatish Balay Scalar *a; 45657b952d6SSatish Balay 45757b952d6SSatish Balay if (!rank) { 458cee3aa6bSSatish Balay ierr = MatCreateMPIBAIJ(mat->comm,baij->bs,M,N,M,N,0,PETSC_NULL,0,PETSC_NULL,&A); 45957b952d6SSatish Balay CHKERRQ(ierr); 46057b952d6SSatish Balay } 46157b952d6SSatish Balay else { 462cee3aa6bSSatish Balay ierr = MatCreateMPIBAIJ(mat->comm,baij->bs,0,0,M,N,0,PETSC_NULL,0,PETSC_NULL,&A); 46357b952d6SSatish Balay CHKERRQ(ierr); 46457b952d6SSatish Balay } 46557b952d6SSatish Balay PLogObjectParent(mat,A); 46657b952d6SSatish Balay 46757b952d6SSatish Balay /* copy over the A part */ 46857b952d6SSatish Balay Aloc = (Mat_SeqBAIJ*) baij->A->data; 46957b952d6SSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 47057b952d6SSatish Balay row = baij->rstart; 47157b952d6SSatish Balay rvals = (int *) PetscMalloc(bs*sizeof(int)); CHKPTRQ(rvals); 47257b952d6SSatish Balay 47357b952d6SSatish Balay for ( i=0; i<mbs; i++ ) { 47457b952d6SSatish Balay rvals[0] = bs*(baij->rstart + i); 47557b952d6SSatish Balay for ( j=1; j<bs; j++ ) { rvals[j] = rvals[j-1] + 1; } 47657b952d6SSatish Balay for ( j=ai[i]; j<ai[i+1]; j++ ) { 47757b952d6SSatish Balay col = (baij->cstart+aj[j])*bs; 47857b952d6SSatish Balay for (k=0; k<bs; k++ ) { 479cee3aa6bSSatish Balay ierr = MatSetValues(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 480cee3aa6bSSatish Balay col++; a += bs; 48157b952d6SSatish Balay } 48257b952d6SSatish Balay } 48357b952d6SSatish Balay } 48457b952d6SSatish Balay /* copy over the B part */ 48557b952d6SSatish Balay Aloc = (Mat_SeqBAIJ*) baij->B->data; 48657b952d6SSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 48757b952d6SSatish Balay row = baij->rstart*bs; 48857b952d6SSatish Balay for ( i=0; i<mbs; i++ ) { 48957b952d6SSatish Balay rvals[0] = bs*(baij->rstart + i); 49057b952d6SSatish Balay for ( j=1; j<bs; j++ ) { rvals[j] = rvals[j-1] + 1; } 49157b952d6SSatish Balay for ( j=ai[i]; j<ai[i+1]; j++ ) { 49257b952d6SSatish Balay col = baij->garray[aj[j]]*bs; 49357b952d6SSatish Balay for (k=0; k<bs; k++ ) { 494cee3aa6bSSatish Balay ierr = MatSetValues(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 495cee3aa6bSSatish Balay col++; a += bs; 49657b952d6SSatish Balay } 49757b952d6SSatish Balay } 49857b952d6SSatish Balay } 49957b952d6SSatish Balay PetscFree(rvals); 5006d4a8577SBarry Smith ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY); CHKERRQ(ierr); 5016d4a8577SBarry Smith ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY); CHKERRQ(ierr); 50257b952d6SSatish Balay if (!rank) { 50357b952d6SSatish Balay ierr = MatView(((Mat_MPIBAIJ*)(A->data))->A,viewer); CHKERRQ(ierr); 50457b952d6SSatish Balay } 50557b952d6SSatish Balay ierr = MatDestroy(A); CHKERRQ(ierr); 50657b952d6SSatish Balay } 50757b952d6SSatish Balay } 50857b952d6SSatish Balay return 0; 50957b952d6SSatish Balay } 51057b952d6SSatish Balay 51157b952d6SSatish Balay 51257b952d6SSatish Balay 51357b952d6SSatish Balay static int MatView_MPIBAIJ(PetscObject obj,Viewer viewer) 51457b952d6SSatish Balay { 51557b952d6SSatish Balay Mat mat = (Mat) obj; 51657b952d6SSatish Balay int ierr; 51757b952d6SSatish Balay ViewerType vtype; 51857b952d6SSatish Balay 51957b952d6SSatish Balay ierr = ViewerGetType(viewer,&vtype); CHKERRQ(ierr); 52057b952d6SSatish Balay if (vtype == ASCII_FILE_VIEWER || vtype == ASCII_FILES_VIEWER || 52157b952d6SSatish Balay vtype == DRAW_VIEWER || vtype == MATLAB_VIEWER) { 52257b952d6SSatish Balay ierr = MatView_MPIBAIJ_ASCIIorDraworMatlab(mat,viewer); CHKERRQ(ierr); 52357b952d6SSatish Balay } 52457b952d6SSatish Balay else if (vtype == BINARY_FILE_VIEWER) { 52557b952d6SSatish Balay return MatView_MPIBAIJ_Binary(mat,viewer); 52657b952d6SSatish Balay } 52757b952d6SSatish Balay return 0; 52857b952d6SSatish Balay } 52957b952d6SSatish Balay 53079bdfe76SSatish Balay static int MatDestroy_MPIBAIJ(PetscObject obj) 53179bdfe76SSatish Balay { 53279bdfe76SSatish Balay Mat mat = (Mat) obj; 53379bdfe76SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *) mat->data; 53479bdfe76SSatish Balay int ierr; 53579bdfe76SSatish Balay 53679bdfe76SSatish Balay #if defined(PETSC_LOG) 53779bdfe76SSatish Balay PLogObjectState(obj,"Rows=%d, Cols=%d",baij->M,baij->N); 53879bdfe76SSatish Balay #endif 53979bdfe76SSatish Balay 54079bdfe76SSatish Balay PetscFree(baij->rowners); 54179bdfe76SSatish Balay ierr = MatDestroy(baij->A); CHKERRQ(ierr); 54279bdfe76SSatish Balay ierr = MatDestroy(baij->B); CHKERRQ(ierr); 54379bdfe76SSatish Balay if (baij->colmap) PetscFree(baij->colmap); 54479bdfe76SSatish Balay if (baij->garray) PetscFree(baij->garray); 54579bdfe76SSatish Balay if (baij->lvec) VecDestroy(baij->lvec); 54679bdfe76SSatish Balay if (baij->Mvctx) VecScatterDestroy(baij->Mvctx); 54779bdfe76SSatish Balay if (baij->rowvalues) PetscFree(baij->rowvalues); 54879bdfe76SSatish Balay PetscFree(baij); 54979bdfe76SSatish Balay PLogObjectDestroy(mat); 55079bdfe76SSatish Balay PetscHeaderDestroy(mat); 55179bdfe76SSatish Balay return 0; 55279bdfe76SSatish Balay } 55379bdfe76SSatish Balay 554cee3aa6bSSatish Balay static int MatMult_MPIBAIJ(Mat A,Vec xx,Vec yy) 555cee3aa6bSSatish Balay { 556cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ *) A->data; 55747b4a8eaSLois Curfman McInnes int ierr, nt; 558cee3aa6bSSatish Balay 559c16cb8f2SBarry Smith VecGetLocalSize_Fast(xx,nt); 56047b4a8eaSLois Curfman McInnes if (nt != a->n) { 5610ac07820SSatish Balay SETERRQ(1,"MatMult_MPIBAIJ:Incompatible parition of A and xx"); 56247b4a8eaSLois Curfman McInnes } 563c16cb8f2SBarry Smith VecGetLocalSize_Fast(yy,nt); 56447b4a8eaSLois Curfman McInnes if (nt != a->m) { 5650ac07820SSatish Balay SETERRQ(1,"MatMult_MPIBAIJ:Incompatible parition of A and yy"); 56647b4a8eaSLois Curfman McInnes } 567cee3aa6bSSatish Balay ierr = VecScatterBegin(xx,a->lvec,INSERT_VALUES,SCATTER_ALL,a->Mvctx);CHKERRQ(ierr); 568cee3aa6bSSatish Balay ierr = (*a->A->ops.mult)(a->A,xx,yy); CHKERRQ(ierr); 569cee3aa6bSSatish Balay ierr = VecScatterEnd(xx,a->lvec,INSERT_VALUES,SCATTER_ALL,a->Mvctx);CHKERRQ(ierr); 570cee3aa6bSSatish Balay ierr = (*a->B->ops.multadd)(a->B,a->lvec,yy,yy); CHKERRQ(ierr); 571cee3aa6bSSatish Balay return 0; 572cee3aa6bSSatish Balay } 573cee3aa6bSSatish Balay 574cee3aa6bSSatish Balay static int MatMultAdd_MPIBAIJ(Mat A,Vec xx,Vec yy,Vec zz) 575cee3aa6bSSatish Balay { 576cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ *) A->data; 577cee3aa6bSSatish Balay int ierr; 578cee3aa6bSSatish Balay ierr = VecScatterBegin(xx,a->lvec,INSERT_VALUES,SCATTER_ALL,a->Mvctx);CHKERRQ(ierr); 579cee3aa6bSSatish Balay ierr = (*a->A->ops.multadd)(a->A,xx,yy,zz); CHKERRQ(ierr); 580cee3aa6bSSatish Balay ierr = VecScatterEnd(xx,a->lvec,INSERT_VALUES,SCATTER_ALL,a->Mvctx);CHKERRQ(ierr); 581cee3aa6bSSatish Balay ierr = (*a->B->ops.multadd)(a->B,a->lvec,zz,zz); CHKERRQ(ierr); 582cee3aa6bSSatish Balay return 0; 583cee3aa6bSSatish Balay } 584cee3aa6bSSatish Balay 585cee3aa6bSSatish Balay static int MatMultTrans_MPIBAIJ(Mat A,Vec xx,Vec yy) 586cee3aa6bSSatish Balay { 587cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ *) A->data; 588cee3aa6bSSatish Balay int ierr; 589cee3aa6bSSatish Balay 590cee3aa6bSSatish Balay /* do nondiagonal part */ 591cee3aa6bSSatish Balay ierr = (*a->B->ops.multtrans)(a->B,xx,a->lvec); CHKERRQ(ierr); 592cee3aa6bSSatish Balay /* send it on its way */ 593537820f0SBarry Smith ierr = VecScatterBegin(a->lvec,yy,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr); 594cee3aa6bSSatish Balay /* do local part */ 595cee3aa6bSSatish Balay ierr = (*a->A->ops.multtrans)(a->A,xx,yy); CHKERRQ(ierr); 596cee3aa6bSSatish Balay /* receive remote parts: note this assumes the values are not actually */ 597cee3aa6bSSatish Balay /* inserted in yy until the next line, which is true for my implementation*/ 598cee3aa6bSSatish Balay /* but is not perhaps always true. */ 599*639f9d9dSBarry Smith ierr = VecScatterEnd(a->lvec,yy,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr); 600cee3aa6bSSatish Balay return 0; 601cee3aa6bSSatish Balay } 602cee3aa6bSSatish Balay 603cee3aa6bSSatish Balay static int MatMultTransAdd_MPIBAIJ(Mat A,Vec xx,Vec yy,Vec zz) 604cee3aa6bSSatish Balay { 605cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ *) A->data; 606cee3aa6bSSatish Balay int ierr; 607cee3aa6bSSatish Balay 608cee3aa6bSSatish Balay /* do nondiagonal part */ 609cee3aa6bSSatish Balay ierr = (*a->B->ops.multtrans)(a->B,xx,a->lvec); CHKERRQ(ierr); 610cee3aa6bSSatish Balay /* send it on its way */ 611537820f0SBarry Smith ierr = VecScatterBegin(a->lvec,zz,ADD_VALUES,SCATTER_REVERSE,a->Mvctx); CHKERRQ(ierr); 612cee3aa6bSSatish Balay /* do local part */ 613cee3aa6bSSatish Balay ierr = (*a->A->ops.multtransadd)(a->A,xx,yy,zz); CHKERRQ(ierr); 614cee3aa6bSSatish Balay /* receive remote parts: note this assumes the values are not actually */ 615cee3aa6bSSatish Balay /* inserted in yy until the next line, which is true for my implementation*/ 616cee3aa6bSSatish Balay /* but is not perhaps always true. */ 617537820f0SBarry Smith ierr = VecScatterEnd(a->lvec,zz,ADD_VALUES,SCATTER_REVERSE,a->Mvctx); CHKERRQ(ierr); 618cee3aa6bSSatish Balay return 0; 619cee3aa6bSSatish Balay } 620cee3aa6bSSatish Balay 621cee3aa6bSSatish Balay /* 622cee3aa6bSSatish Balay This only works correctly for square matrices where the subblock A->A is the 623cee3aa6bSSatish Balay diagonal block 624cee3aa6bSSatish Balay */ 625cee3aa6bSSatish Balay static int MatGetDiagonal_MPIBAIJ(Mat A,Vec v) 626cee3aa6bSSatish Balay { 627cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ *) A->data; 628cee3aa6bSSatish Balay if (a->M != a->N) 629cee3aa6bSSatish Balay SETERRQ(1,"MatGetDiagonal_MPIBAIJ:Supports only square matrix where A->A is diag block"); 630cee3aa6bSSatish Balay return MatGetDiagonal(a->A,v); 631cee3aa6bSSatish Balay } 632cee3aa6bSSatish Balay 633cee3aa6bSSatish Balay static int MatScale_MPIBAIJ(Scalar *aa,Mat A) 634cee3aa6bSSatish Balay { 635cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ *) A->data; 636cee3aa6bSSatish Balay int ierr; 637cee3aa6bSSatish Balay ierr = MatScale(aa,a->A); CHKERRQ(ierr); 638cee3aa6bSSatish Balay ierr = MatScale(aa,a->B); CHKERRQ(ierr); 639cee3aa6bSSatish Balay return 0; 640cee3aa6bSSatish Balay } 64157b952d6SSatish Balay static int MatGetSize_MPIBAIJ(Mat matin,int *m,int *n) 64257b952d6SSatish Balay { 64357b952d6SSatish Balay Mat_MPIBAIJ *mat = (Mat_MPIBAIJ *) matin->data; 64457b952d6SSatish Balay *m = mat->M; *n = mat->N; 64557b952d6SSatish Balay return 0; 64657b952d6SSatish Balay } 64757b952d6SSatish Balay 64857b952d6SSatish Balay static int MatGetLocalSize_MPIBAIJ(Mat matin,int *m,int *n) 64957b952d6SSatish Balay { 65057b952d6SSatish Balay Mat_MPIBAIJ *mat = (Mat_MPIBAIJ *) matin->data; 65157b952d6SSatish Balay *m = mat->m; *n = mat->N; 65257b952d6SSatish Balay return 0; 65357b952d6SSatish Balay } 65457b952d6SSatish Balay 65557b952d6SSatish Balay static int MatGetOwnershipRange_MPIBAIJ(Mat matin,int *m,int *n) 65657b952d6SSatish Balay { 65757b952d6SSatish Balay Mat_MPIBAIJ *mat = (Mat_MPIBAIJ *) matin->data; 65857b952d6SSatish Balay *m = mat->rstart*mat->bs; *n = mat->rend*mat->bs; 65957b952d6SSatish Balay return 0; 66057b952d6SSatish Balay } 66157b952d6SSatish Balay 662acdf5bf4SSatish Balay extern int MatGetRow_SeqBAIJ(Mat,int,int*,int**,Scalar**); 663acdf5bf4SSatish Balay extern int MatRestoreRow_SeqBAIJ(Mat,int,int*,int**,Scalar**); 664acdf5bf4SSatish Balay 665acdf5bf4SSatish Balay int MatGetRow_MPIBAIJ(Mat matin,int row,int *nz,int **idx,Scalar **v) 666acdf5bf4SSatish Balay { 667acdf5bf4SSatish Balay Mat_MPIBAIJ *mat = (Mat_MPIBAIJ *) matin->data; 668acdf5bf4SSatish Balay Scalar *vworkA, *vworkB, **pvA, **pvB,*v_p; 669acdf5bf4SSatish Balay int bs = mat->bs, bs2 = mat->bs2, i, ierr, *cworkA, *cworkB, **pcA, **pcB; 670d9d09a02SSatish Balay int nztot, nzA, nzB, lrow, brstart = mat->rstart*bs, brend = mat->rend*bs; 671d9d09a02SSatish Balay int *cmap, *idx_p,cstart = mat->cstart; 672acdf5bf4SSatish Balay 673acdf5bf4SSatish Balay if (mat->getrowactive == PETSC_TRUE) SETERRQ(1,"MatGetRow_MPIBAIJ:Already active"); 674acdf5bf4SSatish Balay mat->getrowactive = PETSC_TRUE; 675acdf5bf4SSatish Balay 676acdf5bf4SSatish Balay if (!mat->rowvalues && (idx || v)) { 677acdf5bf4SSatish Balay /* 678acdf5bf4SSatish Balay allocate enough space to hold information from the longest row. 679acdf5bf4SSatish Balay */ 680acdf5bf4SSatish Balay Mat_SeqBAIJ *Aa = (Mat_SeqBAIJ *) mat->A->data,*Ba = (Mat_SeqBAIJ *) mat->B->data; 681bd16c2feSSatish Balay int max = 1,mbs = mat->mbs,tmp; 682bd16c2feSSatish Balay for ( i=0; i<mbs; i++ ) { 683acdf5bf4SSatish Balay tmp = Aa->i[i+1] - Aa->i[i] + Ba->i[i+1] - Ba->i[i]; 684acdf5bf4SSatish Balay if (max < tmp) { max = tmp; } 685acdf5bf4SSatish Balay } 686acdf5bf4SSatish Balay mat->rowvalues = (Scalar *) PetscMalloc( max*bs2*(sizeof(int)+sizeof(Scalar))); 687acdf5bf4SSatish Balay CHKPTRQ(mat->rowvalues); 688acdf5bf4SSatish Balay mat->rowindices = (int *) (mat->rowvalues + max*bs2); 689acdf5bf4SSatish Balay } 690acdf5bf4SSatish Balay 691acdf5bf4SSatish Balay 692d9d09a02SSatish Balay if (row < brstart || row >= brend) SETERRQ(1,"MatGetRow_MPIBAIJ:Only local rows") 693d9d09a02SSatish Balay lrow = row - brstart; 694acdf5bf4SSatish Balay 695acdf5bf4SSatish Balay pvA = &vworkA; pcA = &cworkA; pvB = &vworkB; pcB = &cworkB; 696acdf5bf4SSatish Balay if (!v) {pvA = 0; pvB = 0;} 697acdf5bf4SSatish Balay if (!idx) {pcA = 0; if (!v) pcB = 0;} 698acdf5bf4SSatish Balay ierr = (*mat->A->ops.getrow)(mat->A,lrow,&nzA,pcA,pvA); CHKERRQ(ierr); 699acdf5bf4SSatish Balay ierr = (*mat->B->ops.getrow)(mat->B,lrow,&nzB,pcB,pvB); CHKERRQ(ierr); 700acdf5bf4SSatish Balay nztot = nzA + nzB; 701acdf5bf4SSatish Balay 702acdf5bf4SSatish Balay cmap = mat->garray; 703acdf5bf4SSatish Balay if (v || idx) { 704acdf5bf4SSatish Balay if (nztot) { 705acdf5bf4SSatish Balay /* Sort by increasing column numbers, assuming A and B already sorted */ 706acdf5bf4SSatish Balay int imark = -1; 707acdf5bf4SSatish Balay if (v) { 708acdf5bf4SSatish Balay *v = v_p = mat->rowvalues; 709acdf5bf4SSatish Balay for ( i=0; i<nzB; i++ ) { 710d9d09a02SSatish Balay if (cmap[cworkB[i]/bs] < cstart) v_p[i] = vworkB[i]; 711acdf5bf4SSatish Balay else break; 712acdf5bf4SSatish Balay } 713acdf5bf4SSatish Balay imark = i; 714acdf5bf4SSatish Balay for ( i=0; i<nzA; i++ ) v_p[imark+i] = vworkA[i]; 715acdf5bf4SSatish Balay for ( i=imark; i<nzB; i++ ) v_p[nzA+i] = vworkB[i]; 716acdf5bf4SSatish Balay } 717acdf5bf4SSatish Balay if (idx) { 718acdf5bf4SSatish Balay *idx = idx_p = mat->rowindices; 719acdf5bf4SSatish Balay if (imark > -1) { 720acdf5bf4SSatish Balay for ( i=0; i<imark; i++ ) { 721bd16c2feSSatish Balay idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs; 722acdf5bf4SSatish Balay } 723acdf5bf4SSatish Balay } else { 724acdf5bf4SSatish Balay for ( i=0; i<nzB; i++ ) { 725d9d09a02SSatish Balay if (cmap[cworkB[i]/bs] < cstart) 726d9d09a02SSatish Balay idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ; 727acdf5bf4SSatish Balay else break; 728acdf5bf4SSatish Balay } 729acdf5bf4SSatish Balay imark = i; 730acdf5bf4SSatish Balay } 731d9d09a02SSatish Balay for ( i=0; i<nzA; i++ ) idx_p[imark+i] = cstart*bs + cworkA[i]; 732d9d09a02SSatish Balay for ( i=imark; i<nzB; i++ ) idx_p[nzA+i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ; 733acdf5bf4SSatish Balay } 734acdf5bf4SSatish Balay } 735d212a18eSSatish Balay else { 736d212a18eSSatish Balay if (idx) *idx = 0; 737d212a18eSSatish Balay if (v) *v = 0; 738d212a18eSSatish Balay } 739acdf5bf4SSatish Balay } 740acdf5bf4SSatish Balay *nz = nztot; 741acdf5bf4SSatish Balay ierr = (*mat->A->ops.restorerow)(mat->A,lrow,&nzA,pcA,pvA); CHKERRQ(ierr); 742acdf5bf4SSatish Balay ierr = (*mat->B->ops.restorerow)(mat->B,lrow,&nzB,pcB,pvB); CHKERRQ(ierr); 743acdf5bf4SSatish Balay return 0; 744acdf5bf4SSatish Balay } 745acdf5bf4SSatish Balay 746acdf5bf4SSatish Balay int MatRestoreRow_MPIBAIJ(Mat mat,int row,int *nz,int **idx,Scalar **v) 747acdf5bf4SSatish Balay { 748acdf5bf4SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *) mat->data; 749acdf5bf4SSatish Balay if (baij->getrowactive == PETSC_FALSE) { 750acdf5bf4SSatish Balay SETERRQ(1,"MatRestoreRow_MPIBAIJ:MatGetRow not called"); 751acdf5bf4SSatish Balay } 752acdf5bf4SSatish Balay baij->getrowactive = PETSC_FALSE; 753acdf5bf4SSatish Balay return 0; 754acdf5bf4SSatish Balay } 755acdf5bf4SSatish Balay 7565a838052SSatish Balay static int MatGetBlockSize_MPIBAIJ(Mat mat,int *bs) 7575a838052SSatish Balay { 7585a838052SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *) mat->data; 7595a838052SSatish Balay *bs = baij->bs; 7605a838052SSatish Balay return 0; 7615a838052SSatish Balay } 7625a838052SSatish Balay 76358667388SSatish Balay static int MatZeroEntries_MPIBAIJ(Mat A) 76458667388SSatish Balay { 76558667388SSatish Balay Mat_MPIBAIJ *l = (Mat_MPIBAIJ *) A->data; 76658667388SSatish Balay int ierr; 76758667388SSatish Balay ierr = MatZeroEntries(l->A); CHKERRQ(ierr); 76858667388SSatish Balay ierr = MatZeroEntries(l->B); CHKERRQ(ierr); 76958667388SSatish Balay return 0; 77058667388SSatish Balay } 7710ac07820SSatish Balay 7724e220ebcSLois Curfman McInnes static int MatGetInfo_MPIBAIJ(Mat matin,MatInfoType flag,MatInfo *info) 7730ac07820SSatish Balay { 7744e220ebcSLois Curfman McInnes Mat_MPIBAIJ *a = (Mat_MPIBAIJ *) matin->data; 7754e220ebcSLois Curfman McInnes Mat A = a->A, B = a->B; 7767d57db60SLois Curfman McInnes int ierr; 7777d57db60SLois Curfman McInnes double isend[5], irecv[5]; 7780ac07820SSatish Balay 7794e220ebcSLois Curfman McInnes info->rows_global = (double)a->M; 7804e220ebcSLois Curfman McInnes info->columns_global = (double)a->N; 7814e220ebcSLois Curfman McInnes info->rows_local = (double)a->m; 7824e220ebcSLois Curfman McInnes info->columns_local = (double)a->N; 7834e220ebcSLois Curfman McInnes info->block_size = (double)a->bs; 7844e220ebcSLois Curfman McInnes ierr = MatGetInfo(A,MAT_LOCAL,info); CHKERRQ(ierr); 7854e220ebcSLois Curfman McInnes isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->memory; 7864e220ebcSLois Curfman McInnes ierr = MatGetInfo(B,MAT_LOCAL,info); CHKERRQ(ierr); 7874e220ebcSLois Curfman McInnes isend[0] += info->nz_used; isend[1] += info->nz_allocated; isend[2] += info->memory; 7880ac07820SSatish Balay if (flag == MAT_LOCAL) { 7894e220ebcSLois Curfman McInnes info->nz_used = isend[0]; 7904e220ebcSLois Curfman McInnes info->nz_allocated = isend[1]; 7914e220ebcSLois Curfman McInnes info->nz_unneeded = isend[2]; 7924e220ebcSLois Curfman McInnes info->memory = isend[3]; 7934e220ebcSLois Curfman McInnes info->mallocs = isend[4]; 7940ac07820SSatish Balay } else if (flag == MAT_GLOBAL_MAX) { 7950ac07820SSatish Balay MPI_Allreduce(isend,irecv,3,MPI_INT,MPI_MAX,matin->comm); 7964e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 7974e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 7984e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 7994e220ebcSLois Curfman McInnes info->memory = irecv[3]; 8004e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 8010ac07820SSatish Balay } else if (flag == MAT_GLOBAL_SUM) { 8020ac07820SSatish Balay MPI_Allreduce(isend,irecv,3,MPI_INT,MPI_SUM,matin->comm); 8034e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 8044e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 8054e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 8064e220ebcSLois Curfman McInnes info->memory = irecv[3]; 8074e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 8080ac07820SSatish Balay } 8094e220ebcSLois Curfman McInnes info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */ 8104e220ebcSLois Curfman McInnes info->fill_ratio_needed = 0; 8114e220ebcSLois Curfman McInnes info->factor_mallocs = 0; 8120ac07820SSatish Balay return 0; 8130ac07820SSatish Balay } 8140ac07820SSatish Balay 81558667388SSatish Balay static int MatSetOption_MPIBAIJ(Mat A,MatOption op) 81658667388SSatish Balay { 81758667388SSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ *) A->data; 81858667388SSatish Balay 81958667388SSatish Balay if (op == MAT_NO_NEW_NONZERO_LOCATIONS || 82058667388SSatish Balay op == MAT_YES_NEW_NONZERO_LOCATIONS || 82158667388SSatish Balay op == MAT_COLUMNS_SORTED || 82258667388SSatish Balay op == MAT_ROW_ORIENTED) { 82358667388SSatish Balay MatSetOption(a->A,op); 82458667388SSatish Balay MatSetOption(a->B,op); 82558667388SSatish Balay } 82658667388SSatish Balay else if (op == MAT_ROWS_SORTED || 82758667388SSatish Balay op == MAT_SYMMETRIC || 82858667388SSatish Balay op == MAT_STRUCTURALLY_SYMMETRIC || 82958667388SSatish Balay op == MAT_YES_NEW_DIAGONALS) 83058667388SSatish Balay PLogInfo(A,"Info:MatSetOption_MPIBAIJ:Option ignored\n"); 83158667388SSatish Balay else if (op == MAT_COLUMN_ORIENTED) { 83258667388SSatish Balay a->roworiented = 0; 83358667388SSatish Balay MatSetOption(a->A,op); 83458667388SSatish Balay MatSetOption(a->B,op); 83558667388SSatish Balay } 83658667388SSatish Balay else if (op == MAT_NO_NEW_DIAGONALS) 8370ac07820SSatish Balay {SETERRQ(PETSC_ERR_SUP,"MatSetOption_MPIBAIJ:MAT_NO_NEW_DIAGONALS");} 83858667388SSatish Balay else 8390ac07820SSatish Balay {SETERRQ(PETSC_ERR_SUP,"MatSetOption_MPIBAIJ:unknown option");} 84058667388SSatish Balay return 0; 84158667388SSatish Balay } 84258667388SSatish Balay 8430ac07820SSatish Balay static int MatTranspose_MPIBAIJ(Mat A,Mat *matout) 8440ac07820SSatish Balay { 8450ac07820SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *) A->data; 8460ac07820SSatish Balay Mat_SeqBAIJ *Aloc; 8470ac07820SSatish Balay Mat B; 8480ac07820SSatish Balay int ierr,M=baij->M,N=baij->N,*ai,*aj,row,i,*rvals,j,k,col; 8490ac07820SSatish Balay int bs=baij->bs,mbs=baij->mbs; 8500ac07820SSatish Balay Scalar *a; 8510ac07820SSatish Balay 8520ac07820SSatish Balay if (matout == PETSC_NULL && M != N) 8530ac07820SSatish Balay SETERRQ(1,"MatTranspose_MPIBAIJ:Square matrix only for in-place"); 8540ac07820SSatish Balay ierr = MatCreateMPIBAIJ(A->comm,baij->bs,PETSC_DECIDE,PETSC_DECIDE,N,M,0,PETSC_NULL,0,PETSC_NULL,&B); 8550ac07820SSatish Balay CHKERRQ(ierr); 8560ac07820SSatish Balay 8570ac07820SSatish Balay /* copy over the A part */ 8580ac07820SSatish Balay Aloc = (Mat_SeqBAIJ*) baij->A->data; 8590ac07820SSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 8600ac07820SSatish Balay row = baij->rstart; 8610ac07820SSatish Balay rvals = (int *) PetscMalloc(bs*sizeof(int)); CHKPTRQ(rvals); 8620ac07820SSatish Balay 8630ac07820SSatish Balay for ( i=0; i<mbs; i++ ) { 8640ac07820SSatish Balay rvals[0] = bs*(baij->rstart + i); 8650ac07820SSatish Balay for ( j=1; j<bs; j++ ) { rvals[j] = rvals[j-1] + 1; } 8660ac07820SSatish Balay for ( j=ai[i]; j<ai[i+1]; j++ ) { 8670ac07820SSatish Balay col = (baij->cstart+aj[j])*bs; 8680ac07820SSatish Balay for (k=0; k<bs; k++ ) { 8690ac07820SSatish Balay ierr = MatSetValues(B,1,&col,bs,rvals,a,INSERT_VALUES);CHKERRQ(ierr); 8700ac07820SSatish Balay col++; a += bs; 8710ac07820SSatish Balay } 8720ac07820SSatish Balay } 8730ac07820SSatish Balay } 8740ac07820SSatish Balay /* copy over the B part */ 8750ac07820SSatish Balay Aloc = (Mat_SeqBAIJ*) baij->B->data; 8760ac07820SSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 8770ac07820SSatish Balay row = baij->rstart*bs; 8780ac07820SSatish Balay for ( i=0; i<mbs; i++ ) { 8790ac07820SSatish Balay rvals[0] = bs*(baij->rstart + i); 8800ac07820SSatish Balay for ( j=1; j<bs; j++ ) { rvals[j] = rvals[j-1] + 1; } 8810ac07820SSatish Balay for ( j=ai[i]; j<ai[i+1]; j++ ) { 8820ac07820SSatish Balay col = baij->garray[aj[j]]*bs; 8830ac07820SSatish Balay for (k=0; k<bs; k++ ) { 8840ac07820SSatish Balay ierr = MatSetValues(B,1,&col,bs,rvals,a,INSERT_VALUES);CHKERRQ(ierr); 8850ac07820SSatish Balay col++; a += bs; 8860ac07820SSatish Balay } 8870ac07820SSatish Balay } 8880ac07820SSatish Balay } 8890ac07820SSatish Balay PetscFree(rvals); 8900ac07820SSatish Balay ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY); CHKERRQ(ierr); 8910ac07820SSatish Balay ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY); CHKERRQ(ierr); 8920ac07820SSatish Balay 8930ac07820SSatish Balay if (matout != PETSC_NULL) { 8940ac07820SSatish Balay *matout = B; 8950ac07820SSatish Balay } else { 8960ac07820SSatish Balay /* This isn't really an in-place transpose .... but free data structures from baij */ 8970ac07820SSatish Balay PetscFree(baij->rowners); 8980ac07820SSatish Balay ierr = MatDestroy(baij->A); CHKERRQ(ierr); 8990ac07820SSatish Balay ierr = MatDestroy(baij->B); CHKERRQ(ierr); 9000ac07820SSatish Balay if (baij->colmap) PetscFree(baij->colmap); 9010ac07820SSatish Balay if (baij->garray) PetscFree(baij->garray); 9020ac07820SSatish Balay if (baij->lvec) VecDestroy(baij->lvec); 9030ac07820SSatish Balay if (baij->Mvctx) VecScatterDestroy(baij->Mvctx); 9040ac07820SSatish Balay PetscFree(baij); 9050ac07820SSatish Balay PetscMemcpy(A,B,sizeof(struct _Mat)); 9060ac07820SSatish Balay PetscHeaderDestroy(B); 9070ac07820SSatish Balay } 9080ac07820SSatish Balay return 0; 9090ac07820SSatish Balay } 9100e95ebc0SSatish Balay 9110e95ebc0SSatish Balay int MatDiagonalScale_MPIBAIJ(Mat A,Vec ll,Vec rr) 9120e95ebc0SSatish Balay { 9130e95ebc0SSatish Balay Mat a = ((Mat_MPIBAIJ *) A->data)->A; 9140e95ebc0SSatish Balay Mat b = ((Mat_MPIBAIJ *) A->data)->B; 9150e95ebc0SSatish Balay int ierr,s1,s2,s3; 9160e95ebc0SSatish Balay 9170e95ebc0SSatish Balay if (ll) { 9180e95ebc0SSatish Balay ierr = VecGetLocalSize(ll,&s1); CHKERRQ(ierr); 9190e95ebc0SSatish Balay ierr = MatGetLocalSize(A,&s2,&s3); CHKERRQ(ierr); 9200e95ebc0SSatish Balay if (s1!=s2) SETERRQ(1,"MatDiagonalScale_MPIBAIJ: non-conforming local sizes"); 9210e95ebc0SSatish Balay ierr = MatDiagonalScale(a,ll,0); CHKERRQ(ierr); 9220e95ebc0SSatish Balay ierr = MatDiagonalScale(b,ll,0); CHKERRQ(ierr); 9230e95ebc0SSatish Balay } 9240e95ebc0SSatish Balay if (rr) SETERRQ(1,"MatDiagonalScale_MPIBAIJ:not supported for right vector"); 9250e95ebc0SSatish Balay return 0; 9260e95ebc0SSatish Balay } 9270e95ebc0SSatish Balay 9280ac07820SSatish Balay /* the code does not do the diagonal entries correctly unless the 9290ac07820SSatish Balay matrix is square and the column and row owerships are identical. 9300ac07820SSatish Balay This is a BUG. The only way to fix it seems to be to access 9310ac07820SSatish Balay baij->A and baij->B directly and not through the MatZeroRows() 9320ac07820SSatish Balay routine. 9330ac07820SSatish Balay */ 9340ac07820SSatish Balay static int MatZeroRows_MPIBAIJ(Mat A,IS is,Scalar *diag) 9350ac07820SSatish Balay { 9360ac07820SSatish Balay Mat_MPIBAIJ *l = (Mat_MPIBAIJ *) A->data; 9370ac07820SSatish Balay int i,ierr,N, *rows,*owners = l->rowners,size = l->size; 9380ac07820SSatish Balay int *procs,*nprocs,j,found,idx,nsends,*work; 9390ac07820SSatish Balay int nmax,*svalues,*starts,*owner,nrecvs,rank = l->rank; 9400ac07820SSatish Balay int *rvalues,tag = A->tag,count,base,slen,n,*source; 9410ac07820SSatish Balay int *lens,imdex,*lrows,*values,bs=l->bs; 9420ac07820SSatish Balay MPI_Comm comm = A->comm; 9430ac07820SSatish Balay MPI_Request *send_waits,*recv_waits; 9440ac07820SSatish Balay MPI_Status recv_status,*send_status; 9450ac07820SSatish Balay IS istmp; 9460ac07820SSatish Balay 9470ac07820SSatish Balay ierr = ISGetSize(is,&N); CHKERRQ(ierr); 9480ac07820SSatish Balay ierr = ISGetIndices(is,&rows); CHKERRQ(ierr); 9490ac07820SSatish Balay 9500ac07820SSatish Balay /* first count number of contributors to each processor */ 9510ac07820SSatish Balay nprocs = (int *) PetscMalloc( 2*size*sizeof(int) ); CHKPTRQ(nprocs); 9520ac07820SSatish Balay PetscMemzero(nprocs,2*size*sizeof(int)); procs = nprocs + size; 9530ac07820SSatish Balay owner = (int *) PetscMalloc((N+1)*sizeof(int)); CHKPTRQ(owner); /* see note*/ 9540ac07820SSatish Balay for ( i=0; i<N; i++ ) { 9550ac07820SSatish Balay idx = rows[i]; 9560ac07820SSatish Balay found = 0; 9570ac07820SSatish Balay for ( j=0; j<size; j++ ) { 9580ac07820SSatish Balay if (idx >= owners[j]*bs && idx < owners[j+1]*bs) { 9590ac07820SSatish Balay nprocs[j]++; procs[j] = 1; owner[i] = j; found = 1; break; 9600ac07820SSatish Balay } 9610ac07820SSatish Balay } 9620ac07820SSatish Balay if (!found) SETERRQ(1,"MatZeroRows_MPIBAIJ:Index out of range"); 9630ac07820SSatish Balay } 9640ac07820SSatish Balay nsends = 0; for ( i=0; i<size; i++ ) { nsends += procs[i];} 9650ac07820SSatish Balay 9660ac07820SSatish Balay /* inform other processors of number of messages and max length*/ 9670ac07820SSatish Balay work = (int *) PetscMalloc( size*sizeof(int) ); CHKPTRQ(work); 9680ac07820SSatish Balay MPI_Allreduce( procs, work,size,MPI_INT,MPI_SUM,comm); 9690ac07820SSatish Balay nrecvs = work[rank]; 9700ac07820SSatish Balay MPI_Allreduce( nprocs, work,size,MPI_INT,MPI_MAX,comm); 9710ac07820SSatish Balay nmax = work[rank]; 9720ac07820SSatish Balay PetscFree(work); 9730ac07820SSatish Balay 9740ac07820SSatish Balay /* post receives: */ 9750ac07820SSatish Balay rvalues = (int *) PetscMalloc((nrecvs+1)*(nmax+1)*sizeof(int)); /*see note */ 9760ac07820SSatish Balay CHKPTRQ(rvalues); 9770ac07820SSatish Balay recv_waits = (MPI_Request *) PetscMalloc((nrecvs+1)*sizeof(MPI_Request)); 9780ac07820SSatish Balay CHKPTRQ(recv_waits); 9790ac07820SSatish Balay for ( i=0; i<nrecvs; i++ ) { 9800ac07820SSatish Balay MPI_Irecv(rvalues+nmax*i,nmax,MPI_INT,MPI_ANY_SOURCE,tag,comm,recv_waits+i); 9810ac07820SSatish Balay } 9820ac07820SSatish Balay 9830ac07820SSatish Balay /* do sends: 9840ac07820SSatish Balay 1) starts[i] gives the starting index in svalues for stuff going to 9850ac07820SSatish Balay the ith processor 9860ac07820SSatish Balay */ 9870ac07820SSatish Balay svalues = (int *) PetscMalloc( (N+1)*sizeof(int) ); CHKPTRQ(svalues); 9880ac07820SSatish Balay send_waits = (MPI_Request *) PetscMalloc( (nsends+1)*sizeof(MPI_Request)); 9890ac07820SSatish Balay CHKPTRQ(send_waits); 9900ac07820SSatish Balay starts = (int *) PetscMalloc( (size+1)*sizeof(int) ); CHKPTRQ(starts); 9910ac07820SSatish Balay starts[0] = 0; 9920ac07820SSatish Balay for ( i=1; i<size; i++ ) { starts[i] = starts[i-1] + nprocs[i-1];} 9930ac07820SSatish Balay for ( i=0; i<N; i++ ) { 9940ac07820SSatish Balay svalues[starts[owner[i]]++] = rows[i]; 9950ac07820SSatish Balay } 9960ac07820SSatish Balay ISRestoreIndices(is,&rows); 9970ac07820SSatish Balay 9980ac07820SSatish Balay starts[0] = 0; 9990ac07820SSatish Balay for ( i=1; i<size+1; i++ ) { starts[i] = starts[i-1] + nprocs[i-1];} 10000ac07820SSatish Balay count = 0; 10010ac07820SSatish Balay for ( i=0; i<size; i++ ) { 10020ac07820SSatish Balay if (procs[i]) { 10030ac07820SSatish Balay MPI_Isend(svalues+starts[i],nprocs[i],MPI_INT,i,tag,comm,send_waits+count++); 10040ac07820SSatish Balay } 10050ac07820SSatish Balay } 10060ac07820SSatish Balay PetscFree(starts); 10070ac07820SSatish Balay 10080ac07820SSatish Balay base = owners[rank]*bs; 10090ac07820SSatish Balay 10100ac07820SSatish Balay /* wait on receives */ 10110ac07820SSatish Balay lens = (int *) PetscMalloc( 2*(nrecvs+1)*sizeof(int) ); CHKPTRQ(lens); 10120ac07820SSatish Balay source = lens + nrecvs; 10130ac07820SSatish Balay count = nrecvs; slen = 0; 10140ac07820SSatish Balay while (count) { 10150ac07820SSatish Balay MPI_Waitany(nrecvs,recv_waits,&imdex,&recv_status); 10160ac07820SSatish Balay /* unpack receives into our local space */ 10170ac07820SSatish Balay MPI_Get_count(&recv_status,MPI_INT,&n); 10180ac07820SSatish Balay source[imdex] = recv_status.MPI_SOURCE; 10190ac07820SSatish Balay lens[imdex] = n; 10200ac07820SSatish Balay slen += n; 10210ac07820SSatish Balay count--; 10220ac07820SSatish Balay } 10230ac07820SSatish Balay PetscFree(recv_waits); 10240ac07820SSatish Balay 10250ac07820SSatish Balay /* move the data into the send scatter */ 10260ac07820SSatish Balay lrows = (int *) PetscMalloc( (slen+1)*sizeof(int) ); CHKPTRQ(lrows); 10270ac07820SSatish Balay count = 0; 10280ac07820SSatish Balay for ( i=0; i<nrecvs; i++ ) { 10290ac07820SSatish Balay values = rvalues + i*nmax; 10300ac07820SSatish Balay for ( j=0; j<lens[i]; j++ ) { 10310ac07820SSatish Balay lrows[count++] = values[j] - base; 10320ac07820SSatish Balay } 10330ac07820SSatish Balay } 10340ac07820SSatish Balay PetscFree(rvalues); PetscFree(lens); 10350ac07820SSatish Balay PetscFree(owner); PetscFree(nprocs); 10360ac07820SSatish Balay 10370ac07820SSatish Balay /* actually zap the local rows */ 1038537820f0SBarry Smith ierr = ISCreateGeneral(MPI_COMM_SELF,slen,lrows,&istmp);CHKERRQ(ierr); 10390ac07820SSatish Balay PLogObjectParent(A,istmp); 10400ac07820SSatish Balay PetscFree(lrows); 10410ac07820SSatish Balay ierr = MatZeroRows(l->A,istmp,diag); CHKERRQ(ierr); 10420ac07820SSatish Balay ierr = MatZeroRows(l->B,istmp,0); CHKERRQ(ierr); 10430ac07820SSatish Balay ierr = ISDestroy(istmp); CHKERRQ(ierr); 10440ac07820SSatish Balay 10450ac07820SSatish Balay /* wait on sends */ 10460ac07820SSatish Balay if (nsends) { 10470ac07820SSatish Balay send_status = (MPI_Status *) PetscMalloc(nsends*sizeof(MPI_Status)); 10480ac07820SSatish Balay CHKPTRQ(send_status); 10490ac07820SSatish Balay MPI_Waitall(nsends,send_waits,send_status); 10500ac07820SSatish Balay PetscFree(send_status); 10510ac07820SSatish Balay } 10520ac07820SSatish Balay PetscFree(send_waits); PetscFree(svalues); 10530ac07820SSatish Balay 10540ac07820SSatish Balay return 0; 10550ac07820SSatish Balay } 1056ba4ca20aSSatish Balay extern int MatPrintHelp_SeqBAIJ(Mat); 1057ba4ca20aSSatish Balay static int MatPrintHelp_MPIBAIJ(Mat A) 1058ba4ca20aSSatish Balay { 1059ba4ca20aSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*) A->data; 1060ba4ca20aSSatish Balay 1061ba4ca20aSSatish Balay if (!a->rank) return MatPrintHelp_SeqBAIJ(a->A); 1062ba4ca20aSSatish Balay else return 0; 1063ba4ca20aSSatish Balay } 10640ac07820SSatish Balay 10650ac07820SSatish Balay static int MatConvertSameType_MPIBAIJ(Mat,Mat *,int); 10660ac07820SSatish Balay 106779bdfe76SSatish Balay /* -------------------------------------------------------------------*/ 106879bdfe76SSatish Balay static struct _MatOps MatOps = { 1069bd16c2feSSatish Balay MatSetValues_MPIBAIJ,MatGetRow_MPIBAIJ,MatRestoreRow_MPIBAIJ,MatMult_MPIBAIJ, 10704c50302cSBarry Smith MatMultAdd_MPIBAIJ,MatMultTrans_MPIBAIJ,MatMultTransAdd_MPIBAIJ,0, 10714c50302cSBarry Smith 0,0,0,0, 10720ac07820SSatish Balay 0,0,MatTranspose_MPIBAIJ,MatGetInfo_MPIBAIJ, 10730e95ebc0SSatish Balay 0,MatGetDiagonal_MPIBAIJ,MatDiagonalScale_MPIBAIJ,MatNorm_MPIBAIJ, 107458667388SSatish Balay MatAssemblyBegin_MPIBAIJ,MatAssemblyEnd_MPIBAIJ,0,MatSetOption_MPIBAIJ, 10754c50302cSBarry Smith MatZeroEntries_MPIBAIJ,MatZeroRows_MPIBAIJ,0, 10764c50302cSBarry Smith 0,0,0,MatGetSize_MPIBAIJ, 10774c50302cSBarry Smith MatGetLocalSize_MPIBAIJ,MatGetOwnershipRange_MPIBAIJ,0,0, 1078905e6a2fSBarry Smith 0,0,0,MatConvertSameType_MPIBAIJ,0,0, 1079d212a18eSSatish Balay 0,0,0,MatGetSubMatrices_MPIBAIJ, 1080ba4ca20aSSatish Balay MatIncreaseOverlap_MPIBAIJ,MatGetValues_MPIBAIJ,0,MatPrintHelp_MPIBAIJ, 10814c50302cSBarry Smith MatScale_MPIBAIJ,0,0,0,MatGetBlockSize_MPIBAIJ}; 108279bdfe76SSatish Balay 108379bdfe76SSatish Balay 108479bdfe76SSatish Balay /*@C 108579bdfe76SSatish Balay MatCreateMPIBAIJ - Creates a sparse parallel matrix in block AIJ format 108679bdfe76SSatish Balay (block compressed row). For good matrix assembly performance 108779bdfe76SSatish Balay the user should preallocate the matrix storage by setting the parameters 108879bdfe76SSatish Balay d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 108979bdfe76SSatish Balay performance can be increased by more than a factor of 50. 109079bdfe76SSatish Balay 109179bdfe76SSatish Balay Input Parameters: 109279bdfe76SSatish Balay . comm - MPI communicator 109379bdfe76SSatish Balay . bs - size of blockk 109479bdfe76SSatish Balay . m - number of local rows (or PETSC_DECIDE to have calculated if M is given) 109592e8d321SLois Curfman McInnes This value should be the same as the local size used in creating the 109692e8d321SLois Curfman McInnes y vector for the matrix-vector product y = Ax. 109792e8d321SLois Curfman McInnes . n - number of local columns (or PETSC_DECIDE to have calculated if N is given) 109892e8d321SLois Curfman McInnes This value should be the same as the local size used in creating the 109992e8d321SLois Curfman McInnes x vector for the matrix-vector product y = Ax. 110079bdfe76SSatish Balay . M - number of global rows (or PETSC_DECIDE to have calculated if m is given) 110192e8d321SLois Curfman McInnes . N - number of global columns (or PETSC_DECIDE to have calculated if n is given) 110279bdfe76SSatish Balay . d_nz - number of block nonzeros per block row in diagonal portion of local 110379bdfe76SSatish Balay submatrix (same for all local rows) 110492e8d321SLois Curfman McInnes . d_nzz - array containing the number of block nonzeros in the various block rows 110592e8d321SLois Curfman McInnes of the in diagonal portion of the local (possibly different for each block 110692e8d321SLois Curfman McInnes row) or PETSC_NULL. You must leave room for the diagonal entry even if 110792e8d321SLois Curfman McInnes it is zero. 110892e8d321SLois Curfman McInnes . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 110979bdfe76SSatish Balay submatrix (same for all local rows). 111092e8d321SLois Curfman McInnes . o_nzz - array containing the number of nonzeros in the various block rows of the 111192e8d321SLois Curfman McInnes off-diagonal portion of the local submatrix (possibly different for 111292e8d321SLois Curfman McInnes each block row) or PETSC_NULL. 111379bdfe76SSatish Balay 111479bdfe76SSatish Balay Output Parameter: 111579bdfe76SSatish Balay . A - the matrix 111679bdfe76SSatish Balay 111779bdfe76SSatish Balay Notes: 111879bdfe76SSatish Balay The user MUST specify either the local or global matrix dimensions 111979bdfe76SSatish Balay (possibly both). 112079bdfe76SSatish Balay 112179bdfe76SSatish Balay Storage Information: 112279bdfe76SSatish Balay For a square global matrix we define each processor's diagonal portion 112379bdfe76SSatish Balay to be its local rows and the corresponding columns (a square submatrix); 112479bdfe76SSatish Balay each processor's off-diagonal portion encompasses the remainder of the 112579bdfe76SSatish Balay local matrix (a rectangular submatrix). 112679bdfe76SSatish Balay 112779bdfe76SSatish Balay The user can specify preallocated storage for the diagonal part of 112879bdfe76SSatish Balay the local submatrix with either d_nz or d_nnz (not both). Set 112979bdfe76SSatish Balay d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic 113079bdfe76SSatish Balay memory allocation. Likewise, specify preallocated storage for the 113179bdfe76SSatish Balay off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 113279bdfe76SSatish Balay 113379bdfe76SSatish Balay Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 113479bdfe76SSatish Balay the figure below we depict these three local rows and all columns (0-11). 113579bdfe76SSatish Balay 113679bdfe76SSatish Balay $ 0 1 2 3 4 5 6 7 8 9 10 11 113779bdfe76SSatish Balay $ ------------------- 113879bdfe76SSatish Balay $ row 3 | o o o d d d o o o o o o 113979bdfe76SSatish Balay $ row 4 | o o o d d d o o o o o o 114079bdfe76SSatish Balay $ row 5 | o o o d d d o o o o o o 114179bdfe76SSatish Balay $ ------------------- 114279bdfe76SSatish Balay $ 114379bdfe76SSatish Balay 114479bdfe76SSatish Balay Thus, any entries in the d locations are stored in the d (diagonal) 114579bdfe76SSatish Balay submatrix, and any entries in the o locations are stored in the 114679bdfe76SSatish Balay o (off-diagonal) submatrix. Note that the d and the o submatrices are 114757b952d6SSatish Balay stored simply in the MATSEQBAIJ format for compressed row storage. 114879bdfe76SSatish Balay 114979bdfe76SSatish Balay Now d_nz should indicate the number of nonzeros per row in the d matrix, 115079bdfe76SSatish Balay and o_nz should indicate the number of nonzeros per row in the o matrix. 115179bdfe76SSatish Balay In general, for PDE problems in which most nonzeros are near the diagonal, 115292e8d321SLois Curfman McInnes one expects d_nz >> o_nz. For large problems you MUST preallocate memory 115392e8d321SLois Curfman McInnes or you will get TERRIBLE performance; see the users' manual chapter on 115492e8d321SLois Curfman McInnes matrices and the file $(PETSC_DIR)/Performance. 115579bdfe76SSatish Balay 115692e8d321SLois Curfman McInnes .keywords: matrix, block, aij, compressed row, sparse, parallel 115779bdfe76SSatish Balay 115879bdfe76SSatish Balay .seealso: MatCreate(), MatCreateSeqBAIJ(), MatSetValues() 115979bdfe76SSatish Balay @*/ 116079bdfe76SSatish Balay int MatCreateMPIBAIJ(MPI_Comm comm,int bs,int m,int n,int M,int N, 116179bdfe76SSatish Balay int d_nz,int *d_nnz,int o_nz,int *o_nnz,Mat *A) 116279bdfe76SSatish Balay { 116379bdfe76SSatish Balay Mat B; 116479bdfe76SSatish Balay Mat_MPIBAIJ *b; 11654c50302cSBarry Smith int ierr, i,sum[2],work[2],mbs,nbs,Mbs=PETSC_DECIDE,Nbs=PETSC_DECIDE,size; 116679bdfe76SSatish Balay 116779bdfe76SSatish Balay if (bs < 1) SETERRQ(1,"MatCreateMPIBAIJ: invalid block size specified"); 116879bdfe76SSatish Balay *A = 0; 116979bdfe76SSatish Balay PetscHeaderCreate(B,_Mat,MAT_COOKIE,MATMPIBAIJ,comm); 117079bdfe76SSatish Balay PLogObjectCreate(B); 117179bdfe76SSatish Balay B->data = (void *) (b = PetscNew(Mat_MPIBAIJ)); CHKPTRQ(b); 117279bdfe76SSatish Balay PetscMemzero(b,sizeof(Mat_MPIBAIJ)); 117379bdfe76SSatish Balay PetscMemcpy(&B->ops,&MatOps,sizeof(struct _MatOps)); 11744c50302cSBarry Smith MPI_Comm_size(comm,&size); 11754c50302cSBarry Smith if (size == 1) { 11764c50302cSBarry Smith B->ops.getrowij = MatGetRowIJ_MPIBAIJ; 11774c50302cSBarry Smith B->ops.restorerowij = MatRestoreRowIJ_MPIBAIJ; 11784c50302cSBarry Smith B->ops.lufactorsymbolic = MatLUFactorSymbolic_MPIBAIJ; 11794c50302cSBarry Smith B->ops.lufactornumeric = MatLUFactorNumeric_MPIBAIJ; 11804c50302cSBarry Smith B->ops.lufactor = MatLUFactor_MPIBAIJ; 11814c50302cSBarry Smith B->ops.solve = MatSolve_MPIBAIJ; 11824c50302cSBarry Smith B->ops.solveadd = MatSolveAdd_MPIBAIJ; 11834c50302cSBarry Smith B->ops.solvetrans = MatSolveTrans_MPIBAIJ; 11844c50302cSBarry Smith B->ops.solvetransadd = MatSolveTransAdd_MPIBAIJ; 11854c50302cSBarry Smith B->ops.ilufactorsymbolic = MatILUFactorSymbolic_MPIBAIJ; 11864c50302cSBarry Smith } 11874c50302cSBarry Smith 118879bdfe76SSatish Balay B->destroy = MatDestroy_MPIBAIJ; 118979bdfe76SSatish Balay B->view = MatView_MPIBAIJ; 119057b952d6SSatish Balay 119179bdfe76SSatish Balay B->factor = 0; 119279bdfe76SSatish Balay B->assembled = PETSC_FALSE; 119379bdfe76SSatish Balay 119479bdfe76SSatish Balay b->insertmode = NOT_SET_VALUES; 119579bdfe76SSatish Balay MPI_Comm_rank(comm,&b->rank); 119679bdfe76SSatish Balay MPI_Comm_size(comm,&b->size); 119779bdfe76SSatish Balay 119879bdfe76SSatish Balay if ( m == PETSC_DECIDE && (d_nnz != PETSC_NULL || o_nnz != PETSC_NULL)) 119957b952d6SSatish Balay SETERRQ(1,"MatCreateMPIBAIJ:Cannot have PETSC_DECIDE rows but set d_nnz or o_nnz"); 1200cee3aa6bSSatish Balay if ( M == PETSC_DECIDE && m == PETSC_DECIDE) SETERRQ(1,"MatCreateMPIBAIJ: either M or m should be specified"); 1201cee3aa6bSSatish Balay if ( M == PETSC_DECIDE && n == PETSC_DECIDE)SETERRQ(1,"MatCreateMPIBAIJ: either N or n should be specified"); 1202cee3aa6bSSatish Balay if ( M != PETSC_DECIDE && m != PETSC_DECIDE) M = PETSC_DECIDE; 1203cee3aa6bSSatish Balay if ( N != PETSC_DECIDE && n != PETSC_DECIDE) N = PETSC_DECIDE; 120479bdfe76SSatish Balay 120579bdfe76SSatish Balay if (M == PETSC_DECIDE || N == PETSC_DECIDE) { 120679bdfe76SSatish Balay work[0] = m; work[1] = n; 120779bdfe76SSatish Balay mbs = m/bs; nbs = n/bs; 120879bdfe76SSatish Balay MPI_Allreduce( work, sum,2,MPI_INT,MPI_SUM,comm ); 120979bdfe76SSatish Balay if (M == PETSC_DECIDE) {M = sum[0]; Mbs = M/bs;} 121079bdfe76SSatish Balay if (N == PETSC_DECIDE) {N = sum[1]; Nbs = N/bs;} 121179bdfe76SSatish Balay } 121279bdfe76SSatish Balay if (m == PETSC_DECIDE) { 121379bdfe76SSatish Balay Mbs = M/bs; 121479bdfe76SSatish Balay if (Mbs*bs != M) SETERRQ(1,"MatCreateMPIBAIJ: No of global rows must be divisible by blocksize"); 121579bdfe76SSatish Balay mbs = Mbs/b->size + ((Mbs % b->size) > b->rank); 121679bdfe76SSatish Balay m = mbs*bs; 121779bdfe76SSatish Balay } 121879bdfe76SSatish Balay if (n == PETSC_DECIDE) { 121979bdfe76SSatish Balay Nbs = N/bs; 122079bdfe76SSatish Balay if (Nbs*bs != N) SETERRQ(1,"MatCreateMPIBAIJ: No of global cols must be divisible by blocksize"); 122179bdfe76SSatish Balay nbs = Nbs/b->size + ((Nbs % b->size) > b->rank); 122279bdfe76SSatish Balay n = nbs*bs; 122379bdfe76SSatish Balay } 1224cee3aa6bSSatish Balay if (mbs*bs != m || nbs*bs != n) SETERRQ(1,"MatCreateMPIBAIJ: No of local rows, cols must be divisible by blocksize"); 122579bdfe76SSatish Balay 122679bdfe76SSatish Balay b->m = m; B->m = m; 122779bdfe76SSatish Balay b->n = n; B->n = n; 122879bdfe76SSatish Balay b->N = N; B->N = N; 122979bdfe76SSatish Balay b->M = M; B->M = M; 123079bdfe76SSatish Balay b->bs = bs; 123179bdfe76SSatish Balay b->bs2 = bs*bs; 123279bdfe76SSatish Balay b->mbs = mbs; 123379bdfe76SSatish Balay b->nbs = nbs; 123479bdfe76SSatish Balay b->Mbs = Mbs; 123579bdfe76SSatish Balay b->Nbs = Nbs; 123679bdfe76SSatish Balay 123779bdfe76SSatish Balay /* build local table of row and column ownerships */ 123879bdfe76SSatish Balay b->rowners = (int *) PetscMalloc(2*(b->size+2)*sizeof(int)); CHKPTRQ(b->rowners); 123979bdfe76SSatish Balay PLogObjectMemory(B,2*(b->size+2)*sizeof(int)+sizeof(struct _Mat)+sizeof(Mat_MPIBAIJ)); 12400ac07820SSatish Balay b->cowners = b->rowners + b->size + 2; 124179bdfe76SSatish Balay MPI_Allgather(&mbs,1,MPI_INT,b->rowners+1,1,MPI_INT,comm); 124279bdfe76SSatish Balay b->rowners[0] = 0; 124379bdfe76SSatish Balay for ( i=2; i<=b->size; i++ ) { 124479bdfe76SSatish Balay b->rowners[i] += b->rowners[i-1]; 124579bdfe76SSatish Balay } 124679bdfe76SSatish Balay b->rstart = b->rowners[b->rank]; 124779bdfe76SSatish Balay b->rend = b->rowners[b->rank+1]; 124879bdfe76SSatish Balay MPI_Allgather(&nbs,1,MPI_INT,b->cowners+1,1,MPI_INT,comm); 124979bdfe76SSatish Balay b->cowners[0] = 0; 125079bdfe76SSatish Balay for ( i=2; i<=b->size; i++ ) { 125179bdfe76SSatish Balay b->cowners[i] += b->cowners[i-1]; 125279bdfe76SSatish Balay } 125379bdfe76SSatish Balay b->cstart = b->cowners[b->rank]; 125479bdfe76SSatish Balay b->cend = b->cowners[b->rank+1]; 125579bdfe76SSatish Balay 125679bdfe76SSatish Balay if (d_nz == PETSC_DEFAULT) d_nz = 5; 125779bdfe76SSatish Balay ierr = MatCreateSeqBAIJ(MPI_COMM_SELF,bs,m,n,d_nz,d_nnz,&b->A); CHKERRQ(ierr); 125879bdfe76SSatish Balay PLogObjectParent(B,b->A); 125979bdfe76SSatish Balay if (o_nz == PETSC_DEFAULT) o_nz = 0; 126079bdfe76SSatish Balay ierr = MatCreateSeqBAIJ(MPI_COMM_SELF,bs,m,N,o_nz,o_nnz,&b->B); CHKERRQ(ierr); 126179bdfe76SSatish Balay PLogObjectParent(B,b->B); 126279bdfe76SSatish Balay 126379bdfe76SSatish Balay /* build cache for off array entries formed */ 126479bdfe76SSatish Balay ierr = StashBuild_Private(&b->stash); CHKERRQ(ierr); 126579bdfe76SSatish Balay b->colmap = 0; 126679bdfe76SSatish Balay b->garray = 0; 126779bdfe76SSatish Balay b->roworiented = 1; 126879bdfe76SSatish Balay 126979bdfe76SSatish Balay /* stuff used for matrix vector multiply */ 127079bdfe76SSatish Balay b->lvec = 0; 127179bdfe76SSatish Balay b->Mvctx = 0; 127279bdfe76SSatish Balay 127379bdfe76SSatish Balay /* stuff for MatGetRow() */ 127479bdfe76SSatish Balay b->rowindices = 0; 127579bdfe76SSatish Balay b->rowvalues = 0; 127679bdfe76SSatish Balay b->getrowactive = PETSC_FALSE; 127779bdfe76SSatish Balay 127879bdfe76SSatish Balay *A = B; 127979bdfe76SSatish Balay return 0; 128079bdfe76SSatish Balay } 12810ac07820SSatish Balay static int MatConvertSameType_MPIBAIJ(Mat matin,Mat *newmat,int cpvalues) 12820ac07820SSatish Balay { 12830ac07820SSatish Balay Mat mat; 12840ac07820SSatish Balay Mat_MPIBAIJ *a,*oldmat = (Mat_MPIBAIJ *) matin->data; 12850ac07820SSatish Balay int ierr, len=0, flg; 12860ac07820SSatish Balay 12870ac07820SSatish Balay *newmat = 0; 12880ac07820SSatish Balay PetscHeaderCreate(mat,_Mat,MAT_COOKIE,MATMPIBAIJ,matin->comm); 12890ac07820SSatish Balay PLogObjectCreate(mat); 12900ac07820SSatish Balay mat->data = (void *) (a = PetscNew(Mat_MPIBAIJ)); CHKPTRQ(a); 12910ac07820SSatish Balay PetscMemcpy(&mat->ops,&MatOps,sizeof(struct _MatOps)); 12920ac07820SSatish Balay mat->destroy = MatDestroy_MPIBAIJ; 12930ac07820SSatish Balay mat->view = MatView_MPIBAIJ; 12940ac07820SSatish Balay mat->factor = matin->factor; 12950ac07820SSatish Balay mat->assembled = PETSC_TRUE; 12960ac07820SSatish Balay 12970ac07820SSatish Balay a->m = mat->m = oldmat->m; 12980ac07820SSatish Balay a->n = mat->n = oldmat->n; 12990ac07820SSatish Balay a->M = mat->M = oldmat->M; 13000ac07820SSatish Balay a->N = mat->N = oldmat->N; 13010ac07820SSatish Balay 13020ac07820SSatish Balay a->bs = oldmat->bs; 13030ac07820SSatish Balay a->bs2 = oldmat->bs2; 13040ac07820SSatish Balay a->mbs = oldmat->mbs; 13050ac07820SSatish Balay a->nbs = oldmat->nbs; 13060ac07820SSatish Balay a->Mbs = oldmat->Mbs; 13070ac07820SSatish Balay a->Nbs = oldmat->Nbs; 13080ac07820SSatish Balay 13090ac07820SSatish Balay a->rstart = oldmat->rstart; 13100ac07820SSatish Balay a->rend = oldmat->rend; 13110ac07820SSatish Balay a->cstart = oldmat->cstart; 13120ac07820SSatish Balay a->cend = oldmat->cend; 13130ac07820SSatish Balay a->size = oldmat->size; 13140ac07820SSatish Balay a->rank = oldmat->rank; 13150ac07820SSatish Balay a->insertmode = NOT_SET_VALUES; 13160ac07820SSatish Balay a->rowvalues = 0; 13170ac07820SSatish Balay a->getrowactive = PETSC_FALSE; 13180ac07820SSatish Balay 13190ac07820SSatish Balay a->rowners = (int *) PetscMalloc(2*(a->size+2)*sizeof(int)); CHKPTRQ(a->rowners); 13200ac07820SSatish Balay PLogObjectMemory(mat,2*(a->size+2)*sizeof(int)+sizeof(struct _Mat)+sizeof(Mat_MPIBAIJ)); 13210ac07820SSatish Balay a->cowners = a->rowners + a->size + 2; 13220ac07820SSatish Balay PetscMemcpy(a->rowners,oldmat->rowners,2*(a->size+2)*sizeof(int)); 13230ac07820SSatish Balay ierr = StashInitialize_Private(&a->stash); CHKERRQ(ierr); 13240ac07820SSatish Balay if (oldmat->colmap) { 13250ac07820SSatish Balay a->colmap = (int *) PetscMalloc((a->Nbs)*sizeof(int));CHKPTRQ(a->colmap); 13260ac07820SSatish Balay PLogObjectMemory(mat,(a->Nbs)*sizeof(int)); 13270ac07820SSatish Balay PetscMemcpy(a->colmap,oldmat->colmap,(a->Nbs)*sizeof(int)); 13280ac07820SSatish Balay } else a->colmap = 0; 13290ac07820SSatish Balay if (oldmat->garray && (len = ((Mat_SeqBAIJ *) (oldmat->B->data))->nbs)) { 13300ac07820SSatish Balay a->garray = (int *) PetscMalloc(len*sizeof(int)); CHKPTRQ(a->garray); 13310ac07820SSatish Balay PLogObjectMemory(mat,len*sizeof(int)); 13320ac07820SSatish Balay PetscMemcpy(a->garray,oldmat->garray,len*sizeof(int)); 13330ac07820SSatish Balay } else a->garray = 0; 13340ac07820SSatish Balay 13350ac07820SSatish Balay ierr = VecDuplicate(oldmat->lvec,&a->lvec); CHKERRQ(ierr); 13360ac07820SSatish Balay PLogObjectParent(mat,a->lvec); 13370ac07820SSatish Balay ierr = VecScatterCopy(oldmat->Mvctx,&a->Mvctx); CHKERRQ(ierr); 13380ac07820SSatish Balay PLogObjectParent(mat,a->Mvctx); 13390ac07820SSatish Balay ierr = MatConvert(oldmat->A,MATSAME,&a->A); CHKERRQ(ierr); 13400ac07820SSatish Balay PLogObjectParent(mat,a->A); 13410ac07820SSatish Balay ierr = MatConvert(oldmat->B,MATSAME,&a->B); CHKERRQ(ierr); 13420ac07820SSatish Balay PLogObjectParent(mat,a->B); 13430ac07820SSatish Balay ierr = OptionsHasName(PETSC_NULL,"-help",&flg); CHKERRQ(ierr); 13440ac07820SSatish Balay if (flg) { 13450ac07820SSatish Balay ierr = MatPrintHelp(mat); CHKERRQ(ierr); 13460ac07820SSatish Balay } 13470ac07820SSatish Balay *newmat = mat; 13480ac07820SSatish Balay return 0; 13490ac07820SSatish Balay } 135057b952d6SSatish Balay 135157b952d6SSatish Balay #include "sys.h" 135257b952d6SSatish Balay 135357b952d6SSatish Balay int MatLoad_MPIBAIJ(Viewer viewer,MatType type,Mat *newmat) 135457b952d6SSatish Balay { 135557b952d6SSatish Balay Mat A; 135657b952d6SSatish Balay int i, nz, ierr, j,rstart, rend, fd; 135757b952d6SSatish Balay Scalar *vals,*buf; 135857b952d6SSatish Balay MPI_Comm comm = ((PetscObject)viewer)->comm; 135957b952d6SSatish Balay MPI_Status status; 1360cee3aa6bSSatish Balay int header[4],rank,size,*rowlengths = 0,M,N,m,*rowners,*browners,maxnz,*cols; 136157b952d6SSatish Balay int *locrowlens,*sndcounts = 0,*procsnz = 0, jj,*mycols,*ibuf; 136257b952d6SSatish Balay int flg,tag = ((PetscObject)viewer)->tag,bs=1,bs2,Mbs,mbs,extra_rows; 136357b952d6SSatish Balay int *dlens,*odlens,*mask,*masked1,*masked2,rowcount,odcount; 136457b952d6SSatish Balay int dcount,kmax,k,nzcount,tmp; 136557b952d6SSatish Balay 136657b952d6SSatish Balay 136757b952d6SSatish Balay ierr = OptionsGetInt(PETSC_NULL,"-matload_block_size",&bs,&flg);CHKERRQ(ierr); 136857b952d6SSatish Balay bs2 = bs*bs; 136957b952d6SSatish Balay 137057b952d6SSatish Balay MPI_Comm_size(comm,&size); MPI_Comm_rank(comm,&rank); 137157b952d6SSatish Balay if (!rank) { 137257b952d6SSatish Balay ierr = ViewerBinaryGetDescriptor(viewer,&fd); CHKERRQ(ierr); 137357b952d6SSatish Balay ierr = PetscBinaryRead(fd,(char *)header,4,BINARY_INT); CHKERRQ(ierr); 1374cee3aa6bSSatish Balay if (header[0] != MAT_COOKIE) SETERRQ(1,"MatLoad_MPIBAIJ:not matrix object"); 137557b952d6SSatish Balay } 137657b952d6SSatish Balay 137757b952d6SSatish Balay MPI_Bcast(header+1,3,MPI_INT,0,comm); 137857b952d6SSatish Balay M = header[1]; N = header[2]; 137957b952d6SSatish Balay 138057b952d6SSatish Balay if (M != N) SETERRQ(1,"MatLoad_SeqBAIJ:Can only do square matrices"); 138157b952d6SSatish Balay 138257b952d6SSatish Balay /* 138357b952d6SSatish Balay This code adds extra rows to make sure the number of rows is 138457b952d6SSatish Balay divisible by the blocksize 138557b952d6SSatish Balay */ 138657b952d6SSatish Balay Mbs = M/bs; 138757b952d6SSatish Balay extra_rows = bs - M + bs*(Mbs); 138857b952d6SSatish Balay if (extra_rows == bs) extra_rows = 0; 138957b952d6SSatish Balay else Mbs++; 139057b952d6SSatish Balay if (extra_rows &&!rank) { 1391537820f0SBarry Smith PLogInfo(0,"MatLoad_SeqBAIJ:Padding loaded matrix to match blocksize\n"); 139257b952d6SSatish Balay } 1393537820f0SBarry Smith 139457b952d6SSatish Balay /* determine ownership of all rows */ 139557b952d6SSatish Balay mbs = Mbs/size + ((Mbs % size) > rank); 139657b952d6SSatish Balay m = mbs * bs; 1397cee3aa6bSSatish Balay rowners = (int *) PetscMalloc(2*(size+2)*sizeof(int)); CHKPTRQ(rowners); 1398cee3aa6bSSatish Balay browners = rowners + size + 1; 139957b952d6SSatish Balay MPI_Allgather(&mbs,1,MPI_INT,rowners+1,1,MPI_INT,comm); 140057b952d6SSatish Balay rowners[0] = 0; 1401cee3aa6bSSatish Balay for ( i=2; i<=size; i++ ) rowners[i] += rowners[i-1]; 1402cee3aa6bSSatish Balay for ( i=0; i<=size; i++ ) browners[i] = rowners[i]*bs; 140357b952d6SSatish Balay rstart = rowners[rank]; 140457b952d6SSatish Balay rend = rowners[rank+1]; 140557b952d6SSatish Balay 140657b952d6SSatish Balay /* distribute row lengths to all processors */ 140757b952d6SSatish Balay locrowlens = (int*) PetscMalloc( (rend-rstart)*bs*sizeof(int) ); CHKPTRQ(locrowlens); 140857b952d6SSatish Balay if (!rank) { 140957b952d6SSatish Balay rowlengths = (int*) PetscMalloc( (M+extra_rows)*sizeof(int) ); CHKPTRQ(rowlengths); 141057b952d6SSatish Balay ierr = PetscBinaryRead(fd,rowlengths,M,BINARY_INT); CHKERRQ(ierr); 141157b952d6SSatish Balay for ( i=0; i<extra_rows; i++ ) rowlengths[M+i] = 1; 141257b952d6SSatish Balay sndcounts = (int*) PetscMalloc( size*sizeof(int) ); CHKPTRQ(sndcounts); 1413cee3aa6bSSatish Balay for ( i=0; i<size; i++ ) sndcounts[i] = browners[i+1] - browners[i]; 1414cee3aa6bSSatish Balay MPI_Scatterv(rowlengths,sndcounts,browners,MPI_INT,locrowlens,(rend-rstart)*bs,MPI_INT,0,comm); 141557b952d6SSatish Balay PetscFree(sndcounts); 141657b952d6SSatish Balay } 141757b952d6SSatish Balay else { 141857b952d6SSatish Balay MPI_Scatterv(0,0,0,MPI_INT,locrowlens,(rend-rstart)*bs,MPI_INT, 0,comm); 141957b952d6SSatish Balay } 142057b952d6SSatish Balay 142157b952d6SSatish Balay if (!rank) { 142257b952d6SSatish Balay /* calculate the number of nonzeros on each processor */ 142357b952d6SSatish Balay procsnz = (int*) PetscMalloc( size*sizeof(int) ); CHKPTRQ(procsnz); 142457b952d6SSatish Balay PetscMemzero(procsnz,size*sizeof(int)); 142557b952d6SSatish Balay for ( i=0; i<size; i++ ) { 142657b952d6SSatish Balay for ( j=rowners[i]*bs; j< rowners[i+1]*bs; j++ ) { 142757b952d6SSatish Balay procsnz[i] += rowlengths[j]; 142857b952d6SSatish Balay } 142957b952d6SSatish Balay } 143057b952d6SSatish Balay PetscFree(rowlengths); 143157b952d6SSatish Balay 143257b952d6SSatish Balay /* determine max buffer needed and allocate it */ 143357b952d6SSatish Balay maxnz = 0; 143457b952d6SSatish Balay for ( i=0; i<size; i++ ) { 143557b952d6SSatish Balay maxnz = PetscMax(maxnz,procsnz[i]); 143657b952d6SSatish Balay } 143757b952d6SSatish Balay cols = (int *) PetscMalloc( maxnz*sizeof(int) ); CHKPTRQ(cols); 143857b952d6SSatish Balay 143957b952d6SSatish Balay /* read in my part of the matrix column indices */ 144057b952d6SSatish Balay nz = procsnz[0]; 144157b952d6SSatish Balay ibuf = (int *) PetscMalloc( nz*sizeof(int) ); CHKPTRQ(ibuf); 144257b952d6SSatish Balay mycols = ibuf; 1443cee3aa6bSSatish Balay if (size == 1) nz -= extra_rows; 144457b952d6SSatish Balay ierr = PetscBinaryRead(fd,mycols,nz,BINARY_INT); CHKERRQ(ierr); 1445cee3aa6bSSatish Balay if (size == 1) for (i=0; i< extra_rows; i++) { mycols[nz+i] = M+i; } 1446cee3aa6bSSatish Balay 144757b952d6SSatish Balay /* read in every ones (except the last) and ship off */ 144857b952d6SSatish Balay for ( i=1; i<size-1; i++ ) { 144957b952d6SSatish Balay nz = procsnz[i]; 145057b952d6SSatish Balay ierr = PetscBinaryRead(fd,cols,nz,BINARY_INT); CHKERRQ(ierr); 145157b952d6SSatish Balay MPI_Send(cols,nz,MPI_INT,i,tag,comm); 145257b952d6SSatish Balay } 145357b952d6SSatish Balay /* read in the stuff for the last proc */ 145457b952d6SSatish Balay if ( size != 1 ) { 145557b952d6SSatish Balay nz = procsnz[size-1] - extra_rows; /* the extra rows are not on the disk */ 145657b952d6SSatish Balay ierr = PetscBinaryRead(fd,cols,nz,BINARY_INT); CHKERRQ(ierr); 145757b952d6SSatish Balay for ( i=0; i<extra_rows; i++ ) cols[nz+i] = M+i; 1458cee3aa6bSSatish Balay MPI_Send(cols,nz+extra_rows,MPI_INT,size-1,tag,comm); 145957b952d6SSatish Balay } 146057b952d6SSatish Balay PetscFree(cols); 146157b952d6SSatish Balay } 146257b952d6SSatish Balay else { 146357b952d6SSatish Balay /* determine buffer space needed for message */ 146457b952d6SSatish Balay nz = 0; 146557b952d6SSatish Balay for ( i=0; i<m; i++ ) { 146657b952d6SSatish Balay nz += locrowlens[i]; 146757b952d6SSatish Balay } 146857b952d6SSatish Balay ibuf = (int*) PetscMalloc( nz*sizeof(int) ); CHKPTRQ(ibuf); 146957b952d6SSatish Balay mycols = ibuf; 147057b952d6SSatish Balay /* receive message of column indices*/ 147157b952d6SSatish Balay MPI_Recv(mycols,nz,MPI_INT,0,tag,comm,&status); 147257b952d6SSatish Balay MPI_Get_count(&status,MPI_INT,&maxnz); 1473cee3aa6bSSatish Balay if (maxnz != nz) SETERRQ(1,"MatLoad_MPIBAIJ:something is wrong with file"); 147457b952d6SSatish Balay } 147557b952d6SSatish Balay 147657b952d6SSatish Balay /* loop over local rows, determining number of off diagonal entries */ 1477cee3aa6bSSatish Balay dlens = (int *) PetscMalloc( 2*(rend-rstart+1)*sizeof(int) ); CHKPTRQ(dlens); 1478cee3aa6bSSatish Balay odlens = dlens + (rend-rstart); 147957b952d6SSatish Balay mask = (int *) PetscMalloc( 3*Mbs*sizeof(int) ); CHKPTRQ(mask); 1480cee3aa6bSSatish Balay PetscMemzero(mask,3*Mbs*sizeof(int)); 148157b952d6SSatish Balay masked1 = mask + Mbs; 148257b952d6SSatish Balay masked2 = masked1 + Mbs; 148357b952d6SSatish Balay rowcount = 0; nzcount = 0; 148457b952d6SSatish Balay for ( i=0; i<mbs; i++ ) { 148557b952d6SSatish Balay dcount = 0; 148657b952d6SSatish Balay odcount = 0; 148757b952d6SSatish Balay for ( j=0; j<bs; j++ ) { 148857b952d6SSatish Balay kmax = locrowlens[rowcount]; 148957b952d6SSatish Balay for ( k=0; k<kmax; k++ ) { 149057b952d6SSatish Balay tmp = mycols[nzcount++]/bs; 149157b952d6SSatish Balay if (!mask[tmp]) { 149257b952d6SSatish Balay mask[tmp] = 1; 149357b952d6SSatish Balay if (tmp < rstart || tmp >= rend ) masked2[odcount++] = tmp; 149457b952d6SSatish Balay else masked1[dcount++] = tmp; 149557b952d6SSatish Balay } 149657b952d6SSatish Balay } 149757b952d6SSatish Balay rowcount++; 149857b952d6SSatish Balay } 1499cee3aa6bSSatish Balay 150057b952d6SSatish Balay dlens[i] = dcount; 150157b952d6SSatish Balay odlens[i] = odcount; 1502cee3aa6bSSatish Balay 150357b952d6SSatish Balay /* zero out the mask elements we set */ 150457b952d6SSatish Balay for ( j=0; j<dcount; j++ ) mask[masked1[j]] = 0; 150557b952d6SSatish Balay for ( j=0; j<odcount; j++ ) mask[masked2[j]] = 0; 150657b952d6SSatish Balay } 1507cee3aa6bSSatish Balay 150857b952d6SSatish Balay /* create our matrix */ 1509537820f0SBarry Smith ierr = MatCreateMPIBAIJ(comm,bs,m,PETSC_DECIDE,M+extra_rows,N+extra_rows,0,dlens,0,odlens,newmat); 1510537820f0SBarry Smith CHKERRQ(ierr); 151157b952d6SSatish Balay A = *newmat; 15126d4a8577SBarry Smith MatSetOption(A,MAT_COLUMNS_SORTED); 151357b952d6SSatish Balay 151457b952d6SSatish Balay if (!rank) { 151557b952d6SSatish Balay buf = (Scalar *) PetscMalloc( maxnz*sizeof(Scalar) ); CHKPTRQ(buf); 151657b952d6SSatish Balay /* read in my part of the matrix numerical values */ 151757b952d6SSatish Balay nz = procsnz[0]; 151857b952d6SSatish Balay vals = buf; 1519cee3aa6bSSatish Balay mycols = ibuf; 1520cee3aa6bSSatish Balay if (size == 1) nz -= extra_rows; 152157b952d6SSatish Balay ierr = PetscBinaryRead(fd,vals,nz,BINARY_SCALAR); CHKERRQ(ierr); 1522cee3aa6bSSatish Balay if (size == 1) for (i=0; i< extra_rows; i++) { vals[nz+i] = 1.0; } 1523537820f0SBarry Smith 152457b952d6SSatish Balay /* insert into matrix */ 152557b952d6SSatish Balay jj = rstart*bs; 152657b952d6SSatish Balay for ( i=0; i<m; i++ ) { 152757b952d6SSatish Balay ierr = MatSetValues(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr); 152857b952d6SSatish Balay mycols += locrowlens[i]; 152957b952d6SSatish Balay vals += locrowlens[i]; 153057b952d6SSatish Balay jj++; 153157b952d6SSatish Balay } 153257b952d6SSatish Balay /* read in other processors (except the last one) and ship out */ 153357b952d6SSatish Balay for ( i=1; i<size-1; i++ ) { 153457b952d6SSatish Balay nz = procsnz[i]; 153557b952d6SSatish Balay vals = buf; 153657b952d6SSatish Balay ierr = PetscBinaryRead(fd,vals,nz,BINARY_SCALAR); CHKERRQ(ierr); 153757b952d6SSatish Balay MPI_Send(vals,nz,MPIU_SCALAR,i,A->tag,comm); 153857b952d6SSatish Balay } 153957b952d6SSatish Balay /* the last proc */ 154057b952d6SSatish Balay if ( size != 1 ){ 154157b952d6SSatish Balay nz = procsnz[i] - extra_rows; 1542cee3aa6bSSatish Balay vals = buf; 154357b952d6SSatish Balay ierr = PetscBinaryRead(fd,vals,nz,BINARY_SCALAR); CHKERRQ(ierr); 154457b952d6SSatish Balay for ( i=0; i<extra_rows; i++ ) vals[nz+i] = 1.0; 1545cee3aa6bSSatish Balay MPI_Send(vals,nz+extra_rows,MPIU_SCALAR,size-1,A->tag,comm); 154657b952d6SSatish Balay } 154757b952d6SSatish Balay PetscFree(procsnz); 154857b952d6SSatish Balay } 154957b952d6SSatish Balay else { 155057b952d6SSatish Balay /* receive numeric values */ 155157b952d6SSatish Balay buf = (Scalar*) PetscMalloc( nz*sizeof(Scalar) ); CHKPTRQ(buf); 155257b952d6SSatish Balay 155357b952d6SSatish Balay /* receive message of values*/ 155457b952d6SSatish Balay vals = buf; 1555cee3aa6bSSatish Balay mycols = ibuf; 155657b952d6SSatish Balay MPI_Recv(vals,nz,MPIU_SCALAR,0,A->tag,comm,&status); 155757b952d6SSatish Balay MPI_Get_count(&status,MPIU_SCALAR,&maxnz); 1558cee3aa6bSSatish Balay if (maxnz != nz) SETERRQ(1,"MatLoad_MPIBAIJ:something is wrong with file"); 155957b952d6SSatish Balay 156057b952d6SSatish Balay /* insert into matrix */ 156157b952d6SSatish Balay jj = rstart*bs; 1562cee3aa6bSSatish Balay for ( i=0; i<m; i++ ) { 156357b952d6SSatish Balay ierr = MatSetValues(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr); 156457b952d6SSatish Balay mycols += locrowlens[i]; 156557b952d6SSatish Balay vals += locrowlens[i]; 156657b952d6SSatish Balay jj++; 156757b952d6SSatish Balay } 156857b952d6SSatish Balay } 156957b952d6SSatish Balay PetscFree(locrowlens); 157057b952d6SSatish Balay PetscFree(buf); 157157b952d6SSatish Balay PetscFree(ibuf); 157257b952d6SSatish Balay PetscFree(rowners); 157357b952d6SSatish Balay PetscFree(dlens); 1574cee3aa6bSSatish Balay PetscFree(mask); 15756d4a8577SBarry Smith ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY); CHKERRQ(ierr); 15766d4a8577SBarry Smith ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY); CHKERRQ(ierr); 157757b952d6SSatish Balay return 0; 157857b952d6SSatish Balay } 157957b952d6SSatish Balay 158057b952d6SSatish Balay 1581