1c6db04a5SJed Brown #include <../src/mat/impls/baij/mpi/mpibaij.h> /*I "petscmat.h" I*/ 2c5d9258eSSatish Balay 3b51a4376SLisandro Dalcin #include <petsc/private/hashseti.h> 4c6db04a5SJed Brown #include <petscblaslapack.h> 565a92638SMatthew G. Knepley #include <petscsf.h> 679bdfe76SSatish Balay 766976f2fSJacob Faibussowitsch static PetscErrorCode MatDestroy_MPIBAIJ(Mat mat) 826cec326SBarry Smith { 926cec326SBarry Smith Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 1026cec326SBarry Smith 1126cec326SBarry Smith PetscFunctionBegin; 1226cec326SBarry Smith PetscCall(PetscLogObjectState((PetscObject)mat, "Rows=%" PetscInt_FMT ",Cols=%" PetscInt_FMT, mat->rmap->N, mat->cmap->N)); 1326cec326SBarry Smith PetscCall(MatStashDestroy_Private(&mat->stash)); 1426cec326SBarry Smith PetscCall(MatStashDestroy_Private(&mat->bstash)); 1526cec326SBarry Smith PetscCall(MatDestroy(&baij->A)); 1626cec326SBarry Smith PetscCall(MatDestroy(&baij->B)); 1726cec326SBarry Smith #if defined(PETSC_USE_CTABLE) 1826cec326SBarry Smith PetscCall(PetscHMapIDestroy(&baij->colmap)); 1926cec326SBarry Smith #else 2026cec326SBarry Smith PetscCall(PetscFree(baij->colmap)); 2126cec326SBarry Smith #endif 2226cec326SBarry Smith PetscCall(PetscFree(baij->garray)); 2326cec326SBarry Smith PetscCall(VecDestroy(&baij->lvec)); 2426cec326SBarry Smith PetscCall(VecScatterDestroy(&baij->Mvctx)); 2526cec326SBarry Smith PetscCall(PetscFree2(baij->rowvalues, baij->rowindices)); 2626cec326SBarry Smith PetscCall(PetscFree(baij->barray)); 2726cec326SBarry Smith PetscCall(PetscFree2(baij->hd, baij->ht)); 2826cec326SBarry Smith PetscCall(PetscFree(baij->rangebs)); 2926cec326SBarry Smith PetscCall(PetscFree(mat->data)); 3026cec326SBarry Smith 3126cec326SBarry Smith PetscCall(PetscObjectChangeTypeName((PetscObject)mat, NULL)); 3226cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatStoreValues_C", NULL)); 3326cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatRetrieveValues_C", NULL)); 3426cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMPIBAIJSetPreallocation_C", NULL)); 3526cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMPIBAIJSetPreallocationCSR_C", NULL)); 3626cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDiagonalScaleLocal_C", NULL)); 3726cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatSetHashTableFactor_C", NULL)); 3826cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpibaij_mpisbaij_C", NULL)); 3926cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpibaij_mpiadj_C", NULL)); 4026cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpibaij_mpiaij_C", NULL)); 4126cec326SBarry Smith #if defined(PETSC_HAVE_HYPRE) 4226cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpibaij_hypre_C", NULL)); 4326cec326SBarry Smith #endif 4426cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpibaij_is_C", NULL)); 4526cec326SBarry Smith PetscFunctionReturn(PETSC_SUCCESS); 4626cec326SBarry Smith } 4726cec326SBarry Smith 4826cec326SBarry Smith /* defines MatSetValues_MPI_Hash(), MatAssemblyBegin_MPI_Hash(), and MatAssemblyEnd_MPI_Hash() */ 4926cec326SBarry Smith #define TYPE BAIJ 5026cec326SBarry Smith #include "../src/mat/impls/aij/mpi/mpihashmat.h" 5126cec326SBarry Smith #undef TYPE 5226cec326SBarry Smith 537ea3e4caSstefano_zampini #if defined(PETSC_HAVE_HYPRE) 547ea3e4caSstefano_zampini PETSC_INTERN PetscErrorCode MatConvert_AIJ_HYPRE(Mat, MatType, MatReuse, Mat *); 557ea3e4caSstefano_zampini #endif 567ea3e4caSstefano_zampini 5766976f2fSJacob Faibussowitsch static PetscErrorCode MatGetRowMaxAbs_MPIBAIJ(Mat A, Vec v, PetscInt idx[]) 58d71ae5a4SJacob Faibussowitsch { 597843d17aSBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 604e879edeSHong Zhang PetscInt i, *idxb = NULL, m = A->rmap->n, bs = A->cmap->bs; 61db161fc6SPierre Jolivet PetscScalar *vv; 624e879edeSHong Zhang Vec vB, vA; 63db161fc6SPierre Jolivet const PetscScalar *va, *vb; 647843d17aSBarry Smith 657843d17aSBarry Smith PetscFunctionBegin; 66c7b600bfSPierre Jolivet PetscCall(MatCreateVecs(a->A, NULL, &vA)); 679566063dSJacob Faibussowitsch PetscCall(MatGetRowMaxAbs(a->A, vA, idx)); 684e879edeSHong Zhang 69db161fc6SPierre Jolivet PetscCall(VecGetArrayRead(vA, &va)); 70985db425SBarry Smith if (idx) { 714e879edeSHong Zhang for (i = 0; i < m; i++) { 7226fbe8dcSKarl Rupp if (PetscAbsScalar(va[i])) idx[i] += A->cmap->rstart; 7326fbe8dcSKarl Rupp } 74985db425SBarry Smith } 757843d17aSBarry Smith 76c7b600bfSPierre Jolivet PetscCall(MatCreateVecs(a->B, NULL, &vB)); 779566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m, &idxb)); 789566063dSJacob Faibussowitsch PetscCall(MatGetRowMaxAbs(a->B, vB, idxb)); 797843d17aSBarry Smith 809566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(v, &vv)); 819566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(vB, &vb)); 824e879edeSHong Zhang for (i = 0; i < m; i++) { 8326fbe8dcSKarl Rupp if (PetscAbsScalar(va[i]) < PetscAbsScalar(vb[i])) { 844e879edeSHong Zhang vv[i] = vb[i]; 854e879edeSHong Zhang if (idx) idx[i] = bs * a->garray[idxb[i] / bs] + (idxb[i] % bs); 864e879edeSHong Zhang } else { 874e879edeSHong Zhang vv[i] = va[i]; 889371c9d4SSatish Balay if (idx && PetscAbsScalar(va[i]) == PetscAbsScalar(vb[i]) && idxb[i] != -1 && idx[i] > bs * a->garray[idxb[i] / bs] + (idxb[i] % bs)) idx[i] = bs * a->garray[idxb[i] / bs] + (idxb[i] % bs); 8926fbe8dcSKarl Rupp } 907843d17aSBarry Smith } 91db161fc6SPierre Jolivet PetscCall(VecRestoreArrayWrite(v, &vv)); 92db161fc6SPierre Jolivet PetscCall(VecRestoreArrayRead(vA, &va)); 939566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(vB, &vb)); 949566063dSJacob Faibussowitsch PetscCall(PetscFree(idxb)); 959566063dSJacob Faibussowitsch PetscCall(VecDestroy(&vA)); 969566063dSJacob Faibussowitsch PetscCall(VecDestroy(&vB)); 973ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 987843d17aSBarry Smith } 997843d17aSBarry Smith 100c7b600bfSPierre Jolivet static PetscErrorCode MatGetRowSumAbs_MPIBAIJ(Mat A, Vec v) 101c7b600bfSPierre Jolivet { 102c7b600bfSPierre Jolivet Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 103c7b600bfSPierre Jolivet Vec vB, vA; 104c7b600bfSPierre Jolivet 105c7b600bfSPierre Jolivet PetscFunctionBegin; 106c7b600bfSPierre Jolivet PetscCall(MatCreateVecs(a->A, NULL, &vA)); 107c7b600bfSPierre Jolivet PetscCall(MatGetRowSumAbs(a->A, vA)); 108c7b600bfSPierre Jolivet PetscCall(MatCreateVecs(a->B, NULL, &vB)); 109c7b600bfSPierre Jolivet PetscCall(MatGetRowSumAbs(a->B, vB)); 110c7b600bfSPierre Jolivet PetscCall(VecAXPY(vA, 1.0, vB)); 111c7b600bfSPierre Jolivet PetscCall(VecDestroy(&vB)); 112c7b600bfSPierre Jolivet PetscCall(VecCopy(vA, v)); 113c7b600bfSPierre Jolivet PetscCall(VecDestroy(&vA)); 114c7b600bfSPierre Jolivet PetscFunctionReturn(PETSC_SUCCESS); 115c7b600bfSPierre Jolivet } 116c7b600bfSPierre Jolivet 11766976f2fSJacob Faibussowitsch static PetscErrorCode MatStoreValues_MPIBAIJ(Mat mat) 118d71ae5a4SJacob Faibussowitsch { 1197fc3c18eSBarry Smith Mat_MPIBAIJ *aij = (Mat_MPIBAIJ *)mat->data; 1207fc3c18eSBarry Smith 1217fc3c18eSBarry Smith PetscFunctionBegin; 1229566063dSJacob Faibussowitsch PetscCall(MatStoreValues(aij->A)); 1239566063dSJacob Faibussowitsch PetscCall(MatStoreValues(aij->B)); 1243ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1257fc3c18eSBarry Smith } 1267fc3c18eSBarry Smith 12766976f2fSJacob Faibussowitsch static PetscErrorCode MatRetrieveValues_MPIBAIJ(Mat mat) 128d71ae5a4SJacob Faibussowitsch { 1297fc3c18eSBarry Smith Mat_MPIBAIJ *aij = (Mat_MPIBAIJ *)mat->data; 1307fc3c18eSBarry Smith 1317fc3c18eSBarry Smith PetscFunctionBegin; 1329566063dSJacob Faibussowitsch PetscCall(MatRetrieveValues(aij->A)); 1339566063dSJacob Faibussowitsch PetscCall(MatRetrieveValues(aij->B)); 1343ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1357fc3c18eSBarry Smith } 1367fc3c18eSBarry Smith 137537820f0SBarry Smith /* 138537820f0SBarry Smith Local utility routine that creates a mapping from the global column 13957b952d6SSatish Balay number to the local number in the off-diagonal part of the local 140e06f6af7SJed Brown storage of the matrix. This is done in a non scalable way since the 14157b952d6SSatish Balay length of colmap equals the global matrix length. 14257b952d6SSatish Balay */ 143d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateColmap_MPIBAIJ_Private(Mat mat) 144d71ae5a4SJacob Faibussowitsch { 14557b952d6SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 14657b952d6SSatish Balay Mat_SeqBAIJ *B = (Mat_SeqBAIJ *)baij->B->data; 147d0f46423SBarry Smith PetscInt nbs = B->nbs, i, bs = mat->rmap->bs; 14857b952d6SSatish Balay 149d64ed03dSBarry Smith PetscFunctionBegin; 150aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 151eec179cfSJacob Faibussowitsch PetscCall(PetscHMapICreateWithSize(baij->nbs, &baij->colmap)); 152c76ffc5fSJacob Faibussowitsch for (i = 0; i < nbs; i++) PetscCall(PetscHMapISet(baij->colmap, baij->garray[i] + 1, i * bs + 1)); 15348e59246SSatish Balay #else 1549566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(baij->Nbs + 1, &baij->colmap)); 155928fc39bSSatish Balay for (i = 0; i < nbs; i++) baij->colmap[baij->garray[i]] = i * bs + 1; 15648e59246SSatish Balay #endif 1573ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 15857b952d6SSatish Balay } 15957b952d6SSatish Balay 160d40312a9SBarry Smith #define MatSetValues_SeqBAIJ_A_Private(row, col, value, addv, orow, ocol) \ 161a8f51744SPierre Jolivet do { \ 16280c1aa95SSatish Balay brow = row / bs; \ 1638e3a54c0SPierre Jolivet rp = PetscSafePointerPlusOffset(aj, ai[brow]); \ 1648e3a54c0SPierre Jolivet ap = PetscSafePointerPlusOffset(aa, bs2 * ai[brow]); \ 1659371c9d4SSatish Balay rmax = aimax[brow]; \ 1669371c9d4SSatish Balay nrow = ailen[brow]; \ 16780c1aa95SSatish Balay bcol = col / bs; \ 1689371c9d4SSatish Balay ridx = row % bs; \ 1699371c9d4SSatish Balay cidx = col % bs; \ 1709371c9d4SSatish Balay low = 0; \ 1719371c9d4SSatish Balay high = nrow; \ 172ab26458aSBarry Smith while (high - low > 3) { \ 173ab26458aSBarry Smith t = (low + high) / 2; \ 174ab26458aSBarry Smith if (rp[t] > bcol) high = t; \ 175ab26458aSBarry Smith else low = t; \ 176ab26458aSBarry Smith } \ 177ab26458aSBarry Smith for (_i = low; _i < high; _i++) { \ 17880c1aa95SSatish Balay if (rp[_i] > bcol) break; \ 17980c1aa95SSatish Balay if (rp[_i] == bcol) { \ 18080c1aa95SSatish Balay bap = ap + bs2 * _i + bs * cidx + ridx; \ 181eada6651SSatish Balay if (addv == ADD_VALUES) *bap += value; \ 182eada6651SSatish Balay else *bap = value; \ 183ac7a638eSSatish Balay goto a_noinsert; \ 18480c1aa95SSatish Balay } \ 18580c1aa95SSatish Balay } \ 18689280ab3SLois Curfman McInnes if (a->nonew == 1) goto a_noinsert; \ 1875f80ce2aSJacob Faibussowitsch PetscCheck(a->nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", orow, ocol); \ 188fef13f97SBarry Smith MatSeqXAIJReallocateAIJ(A, a->mbs, bs2, nrow, brow, bcol, rmax, aa, ai, aj, rp, ap, aimax, a->nonew, MatScalar); \ 18980c1aa95SSatish Balay N = nrow++ - 1; \ 19080c1aa95SSatish Balay /* shift up all the later entries in this row */ \ 1919566063dSJacob Faibussowitsch PetscCall(PetscArraymove(rp + _i + 1, rp + _i, N - _i + 1)); \ 1929566063dSJacob Faibussowitsch PetscCall(PetscArraymove(ap + bs2 * (_i + 1), ap + bs2 * _i, bs2 * (N - _i + 1))); \ 1939566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(ap + bs2 * _i, bs2)); \ 19480c1aa95SSatish Balay rp[_i] = bcol; \ 19580c1aa95SSatish Balay ap[bs2 * _i + bs * cidx + ridx] = value; \ 196ac7a638eSSatish Balay a_noinsert:; \ 19780c1aa95SSatish Balay ailen[brow] = nrow; \ 198a8f51744SPierre Jolivet } while (0) 19957b952d6SSatish Balay 200d40312a9SBarry Smith #define MatSetValues_SeqBAIJ_B_Private(row, col, value, addv, orow, ocol) \ 201a8f51744SPierre Jolivet do { \ 202ac7a638eSSatish Balay brow = row / bs; \ 2038e3a54c0SPierre Jolivet rp = PetscSafePointerPlusOffset(bj, bi[brow]); \ 2048e3a54c0SPierre Jolivet ap = PetscSafePointerPlusOffset(ba, bs2 * bi[brow]); \ 2059371c9d4SSatish Balay rmax = bimax[brow]; \ 2069371c9d4SSatish Balay nrow = bilen[brow]; \ 207ac7a638eSSatish Balay bcol = col / bs; \ 2089371c9d4SSatish Balay ridx = row % bs; \ 2099371c9d4SSatish Balay cidx = col % bs; \ 2109371c9d4SSatish Balay low = 0; \ 2119371c9d4SSatish Balay high = nrow; \ 212ac7a638eSSatish Balay while (high - low > 3) { \ 213ac7a638eSSatish Balay t = (low + high) / 2; \ 214ac7a638eSSatish Balay if (rp[t] > bcol) high = t; \ 215ac7a638eSSatish Balay else low = t; \ 216ac7a638eSSatish Balay } \ 217ac7a638eSSatish Balay for (_i = low; _i < high; _i++) { \ 218ac7a638eSSatish Balay if (rp[_i] > bcol) break; \ 219ac7a638eSSatish Balay if (rp[_i] == bcol) { \ 220ac7a638eSSatish Balay bap = ap + bs2 * _i + bs * cidx + ridx; \ 221ac7a638eSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 222ac7a638eSSatish Balay else *bap = value; \ 223ac7a638eSSatish Balay goto b_noinsert; \ 224ac7a638eSSatish Balay } \ 225ac7a638eSSatish Balay } \ 22689280ab3SLois Curfman McInnes if (b->nonew == 1) goto b_noinsert; \ 2275f80ce2aSJacob Faibussowitsch PetscCheck(b->nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", orow, ocol); \ 228fef13f97SBarry Smith MatSeqXAIJReallocateAIJ(B, b->mbs, bs2, nrow, brow, bcol, rmax, ba, bi, bj, rp, ap, bimax, b->nonew, MatScalar); \ 229ac7a638eSSatish Balay N = nrow++ - 1; \ 230ac7a638eSSatish Balay /* shift up all the later entries in this row */ \ 2319566063dSJacob Faibussowitsch PetscCall(PetscArraymove(rp + _i + 1, rp + _i, N - _i + 1)); \ 2329566063dSJacob Faibussowitsch PetscCall(PetscArraymove(ap + bs2 * (_i + 1), ap + bs2 * _i, bs2 * (N - _i + 1))); \ 2339566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(ap + bs2 * _i, bs2)); \ 234ac7a638eSSatish Balay rp[_i] = bcol; \ 235ac7a638eSSatish Balay ap[bs2 * _i + bs * cidx + ridx] = value; \ 236ac7a638eSSatish Balay b_noinsert:; \ 237ac7a638eSSatish Balay bilen[brow] = nrow; \ 238a8f51744SPierre Jolivet } while (0) 239ac7a638eSSatish Balay 240d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetValues_MPIBAIJ(Mat mat, PetscInt m, const PetscInt im[], PetscInt n, const PetscInt in[], const PetscScalar v[], InsertMode addv) 241d71ae5a4SJacob Faibussowitsch { 24257b952d6SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 24393fea6afSBarry Smith MatScalar value; 244ace3abfcSBarry Smith PetscBool roworiented = baij->roworiented; 245b24ad042SBarry Smith PetscInt i, j, row, col; 246d0f46423SBarry Smith PetscInt rstart_orig = mat->rmap->rstart; 247d0f46423SBarry Smith PetscInt rend_orig = mat->rmap->rend, cstart_orig = mat->cmap->rstart; 248d0f46423SBarry Smith PetscInt cend_orig = mat->cmap->rend, bs = mat->rmap->bs; 24957b952d6SSatish Balay 250eada6651SSatish Balay /* Some Variables required in the macro */ 25180c1aa95SSatish Balay Mat A = baij->A; 25257508eceSPierre Jolivet Mat_SeqBAIJ *a = (Mat_SeqBAIJ *)A->data; 253b24ad042SBarry Smith PetscInt *aimax = a->imax, *ai = a->i, *ailen = a->ilen, *aj = a->j; 2543eda8832SBarry Smith MatScalar *aa = a->a; 255ac7a638eSSatish Balay 256ac7a638eSSatish Balay Mat B = baij->B; 25757508eceSPierre Jolivet Mat_SeqBAIJ *b = (Mat_SeqBAIJ *)B->data; 258b24ad042SBarry Smith PetscInt *bimax = b->imax, *bi = b->i, *bilen = b->ilen, *bj = b->j; 2593eda8832SBarry Smith MatScalar *ba = b->a; 260ac7a638eSSatish Balay 261b24ad042SBarry Smith PetscInt *rp, ii, nrow, _i, rmax, N, brow, bcol; 262b24ad042SBarry Smith PetscInt low, high, t, ridx, cidx, bs2 = a->bs2; 2633eda8832SBarry Smith MatScalar *ap, *bap; 26480c1aa95SSatish Balay 265d64ed03dSBarry Smith PetscFunctionBegin; 26657b952d6SSatish Balay for (i = 0; i < m; i++) { 2675ef9f2a5SBarry Smith if (im[i] < 0) continue; 2685f80ce2aSJacob Faibussowitsch PetscCheck(im[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, im[i], mat->rmap->N - 1); 26957b952d6SSatish Balay if (im[i] >= rstart_orig && im[i] < rend_orig) { 27057b952d6SSatish Balay row = im[i] - rstart_orig; 27157b952d6SSatish Balay for (j = 0; j < n; j++) { 27257b952d6SSatish Balay if (in[j] >= cstart_orig && in[j] < cend_orig) { 27357b952d6SSatish Balay col = in[j] - cstart_orig; 274db4deed7SKarl Rupp if (roworiented) value = v[i * n + j]; 275db4deed7SKarl Rupp else value = v[i + j * m]; 276d40312a9SBarry Smith MatSetValues_SeqBAIJ_A_Private(row, col, value, addv, im[i], in[j]); 277f7d195e4SLawrence Mitchell } else if (in[j] < 0) { 278f7d195e4SLawrence Mitchell continue; 279f7d195e4SLawrence Mitchell } else { 280f7d195e4SLawrence Mitchell PetscCheck(in[j] < mat->cmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, in[j], mat->cmap->N - 1); 28157b952d6SSatish Balay if (mat->was_assembled) { 28248a46eb9SPierre Jolivet if (!baij->colmap) PetscCall(MatCreateColmap_MPIBAIJ_Private(mat)); 283aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 284eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIGetWithDefault(baij->colmap, in[j] / bs + 1, 0, &col)); 285bba1ac68SSatish Balay col = col - 1; 28648e59246SSatish Balay #else 287bba1ac68SSatish Balay col = baij->colmap[in[j] / bs] - 1; 28848e59246SSatish Balay #endif 289f4f49eeaSPierre Jolivet if (col < 0 && !((Mat_SeqBAIJ *)baij->B->data)->nonew) { 2909566063dSJacob Faibussowitsch PetscCall(MatDisAssemble_MPIBAIJ(mat)); 2918295de27SSatish Balay col = in[j]; 2929bf004c3SSatish Balay /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */ 2939bf004c3SSatish Balay B = baij->B; 29457508eceSPierre Jolivet b = (Mat_SeqBAIJ *)B->data; 2959371c9d4SSatish Balay bimax = b->imax; 2969371c9d4SSatish Balay bi = b->i; 2979371c9d4SSatish Balay bilen = b->ilen; 2989371c9d4SSatish Balay bj = b->j; 2999bf004c3SSatish Balay ba = b->a; 300f7d195e4SLawrence Mitchell } else { 301f7d195e4SLawrence Mitchell PetscCheck(col >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", im[i], in[j]); 302f7d195e4SLawrence Mitchell col += in[j] % bs; 303f7d195e4SLawrence Mitchell } 3048295de27SSatish Balay } else col = in[j]; 305db4deed7SKarl Rupp if (roworiented) value = v[i * n + j]; 306db4deed7SKarl Rupp else value = v[i + j * m]; 307d40312a9SBarry Smith MatSetValues_SeqBAIJ_B_Private(row, col, value, addv, im[i], in[j]); 3089566063dSJacob Faibussowitsch /* PetscCall(MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv)); */ 30957b952d6SSatish Balay } 31057b952d6SSatish Balay } 311d64ed03dSBarry Smith } else { 3125f80ce2aSJacob Faibussowitsch PetscCheck(!mat->nooffprocentries, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Setting off process row %" PetscInt_FMT " even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set", im[i]); 31390f02eecSBarry Smith if (!baij->donotstash) { 3145080c13bSMatthew G Knepley mat->assembled = PETSC_FALSE; 315ff2fd236SBarry Smith if (roworiented) { 3169566063dSJacob Faibussowitsch PetscCall(MatStashValuesRow_Private(&mat->stash, im[i], n, in, v + i * n, PETSC_FALSE)); 317ff2fd236SBarry Smith } else { 3189566063dSJacob Faibussowitsch PetscCall(MatStashValuesCol_Private(&mat->stash, im[i], n, in, v + i, m, PETSC_FALSE)); 31957b952d6SSatish Balay } 32057b952d6SSatish Balay } 32157b952d6SSatish Balay } 32290f02eecSBarry Smith } 3233ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 32457b952d6SSatish Balay } 32557b952d6SSatish Balay 326d71ae5a4SJacob Faibussowitsch static inline PetscErrorCode MatSetValuesBlocked_SeqBAIJ_Inlined(Mat A, PetscInt row, PetscInt col, const PetscScalar v[], InsertMode is, PetscInt orow, PetscInt ocol) 327d71ae5a4SJacob Faibussowitsch { 328880c6e6aSBarry Smith Mat_SeqBAIJ *a = (Mat_SeqBAIJ *)A->data; 3298ab52850SBarry Smith PetscInt *rp, low, high, t, ii, jj, nrow, i, rmax, N; 330880c6e6aSBarry Smith PetscInt *imax = a->imax, *ai = a->i, *ailen = a->ilen; 3318ab52850SBarry Smith PetscInt *aj = a->j, nonew = a->nonew, bs2 = a->bs2, bs = A->rmap->bs; 332880c6e6aSBarry Smith PetscBool roworiented = a->roworiented; 333880c6e6aSBarry Smith const PetscScalar *value = v; 334880c6e6aSBarry Smith MatScalar *ap, *aa = a->a, *bap; 335880c6e6aSBarry Smith 336880c6e6aSBarry Smith PetscFunctionBegin; 337880c6e6aSBarry Smith rp = aj + ai[row]; 338880c6e6aSBarry Smith ap = aa + bs2 * ai[row]; 339880c6e6aSBarry Smith rmax = imax[row]; 340880c6e6aSBarry Smith nrow = ailen[row]; 3418ab52850SBarry Smith value = v; 3428ab52850SBarry Smith low = 0; 3438ab52850SBarry Smith high = nrow; 344880c6e6aSBarry Smith while (high - low > 7) { 345880c6e6aSBarry Smith t = (low + high) / 2; 346880c6e6aSBarry Smith if (rp[t] > col) high = t; 347880c6e6aSBarry Smith else low = t; 348880c6e6aSBarry Smith } 349880c6e6aSBarry Smith for (i = low; i < high; i++) { 350880c6e6aSBarry Smith if (rp[i] > col) break; 351880c6e6aSBarry Smith if (rp[i] == col) { 352880c6e6aSBarry Smith bap = ap + bs2 * i; 353880c6e6aSBarry Smith if (roworiented) { 354880c6e6aSBarry Smith if (is == ADD_VALUES) { 3558ab52850SBarry Smith for (ii = 0; ii < bs; ii++) { 356ad540459SPierre Jolivet for (jj = ii; jj < bs2; jj += bs) bap[jj] += *value++; 357880c6e6aSBarry Smith } 358880c6e6aSBarry Smith } else { 3598ab52850SBarry Smith for (ii = 0; ii < bs; ii++) { 360ad540459SPierre Jolivet for (jj = ii; jj < bs2; jj += bs) bap[jj] = *value++; 361880c6e6aSBarry Smith } 362880c6e6aSBarry Smith } 363880c6e6aSBarry Smith } else { 364880c6e6aSBarry Smith if (is == ADD_VALUES) { 3658ab52850SBarry Smith for (ii = 0; ii < bs; ii++, value += bs) { 366ad540459SPierre Jolivet for (jj = 0; jj < bs; jj++) bap[jj] += value[jj]; 367880c6e6aSBarry Smith bap += bs; 368880c6e6aSBarry Smith } 369880c6e6aSBarry Smith } else { 3708ab52850SBarry Smith for (ii = 0; ii < bs; ii++, value += bs) { 371ad540459SPierre Jolivet for (jj = 0; jj < bs; jj++) bap[jj] = value[jj]; 372880c6e6aSBarry Smith bap += bs; 373880c6e6aSBarry Smith } 374880c6e6aSBarry Smith } 375880c6e6aSBarry Smith } 376880c6e6aSBarry Smith goto noinsert2; 377880c6e6aSBarry Smith } 378880c6e6aSBarry Smith } 379880c6e6aSBarry Smith if (nonew == 1) goto noinsert2; 3805f80ce2aSJacob Faibussowitsch PetscCheck(nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new global block indexed nonzero block (%" PetscInt_FMT ", %" PetscInt_FMT ") in the matrix", orow, ocol); 381880c6e6aSBarry Smith MatSeqXAIJReallocateAIJ(A, a->mbs, bs2, nrow, row, col, rmax, aa, ai, aj, rp, ap, imax, nonew, MatScalar); 3829371c9d4SSatish Balay N = nrow++ - 1; 3839371c9d4SSatish Balay high++; 384880c6e6aSBarry Smith /* shift up all the later entries in this row */ 3859566063dSJacob Faibussowitsch PetscCall(PetscArraymove(rp + i + 1, rp + i, N - i + 1)); 3869566063dSJacob Faibussowitsch PetscCall(PetscArraymove(ap + bs2 * (i + 1), ap + bs2 * i, bs2 * (N - i + 1))); 387880c6e6aSBarry Smith rp[i] = col; 388880c6e6aSBarry Smith bap = ap + bs2 * i; 389880c6e6aSBarry Smith if (roworiented) { 3908ab52850SBarry Smith for (ii = 0; ii < bs; ii++) { 391ad540459SPierre Jolivet for (jj = ii; jj < bs2; jj += bs) bap[jj] = *value++; 392880c6e6aSBarry Smith } 393880c6e6aSBarry Smith } else { 3948ab52850SBarry Smith for (ii = 0; ii < bs; ii++) { 395ad540459SPierre Jolivet for (jj = 0; jj < bs; jj++) *bap++ = *value++; 396880c6e6aSBarry Smith } 397880c6e6aSBarry Smith } 398880c6e6aSBarry Smith noinsert2:; 399880c6e6aSBarry Smith ailen[row] = nrow; 4003ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 401880c6e6aSBarry Smith } 402880c6e6aSBarry Smith 4038ab52850SBarry Smith /* 4048ab52850SBarry Smith This routine should be optimized so that the block copy at ** Here a copy is required ** below is not needed 4058ab52850SBarry Smith by passing additional stride information into the MatSetValuesBlocked_SeqBAIJ_Inlined() routine 4068ab52850SBarry Smith */ 40766976f2fSJacob Faibussowitsch static PetscErrorCode MatSetValuesBlocked_MPIBAIJ(Mat mat, PetscInt m, const PetscInt im[], PetscInt n, const PetscInt in[], const PetscScalar v[], InsertMode addv) 408d71ae5a4SJacob Faibussowitsch { 409ab26458aSBarry Smith Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 410dd6ea824SBarry Smith const PetscScalar *value; 411f15d580aSBarry Smith MatScalar *barray = baij->barray; 412ace3abfcSBarry Smith PetscBool roworiented = baij->roworiented; 413899cda47SBarry Smith PetscInt i, j, ii, jj, row, col, rstart = baij->rstartbs; 414899cda47SBarry Smith PetscInt rend = baij->rendbs, cstart = baij->cstartbs, stepval; 415d0f46423SBarry Smith PetscInt cend = baij->cendbs, bs = mat->rmap->bs, bs2 = baij->bs2; 416ab26458aSBarry Smith 417b16ae2b1SBarry Smith PetscFunctionBegin; 41830793edcSSatish Balay if (!barray) { 4199566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(bs2, &barray)); 42082502324SSatish Balay baij->barray = barray; 42130793edcSSatish Balay } 42230793edcSSatish Balay 42326fbe8dcSKarl Rupp if (roworiented) stepval = (n - 1) * bs; 42426fbe8dcSKarl Rupp else stepval = (m - 1) * bs; 42526fbe8dcSKarl Rupp 426ab26458aSBarry Smith for (i = 0; i < m; i++) { 4275ef9f2a5SBarry Smith if (im[i] < 0) continue; 4286bdcaf15SBarry Smith PetscCheck(im[i] < baij->Mbs, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Block indexed row too large %" PetscInt_FMT " max %" PetscInt_FMT, im[i], baij->Mbs - 1); 429ab26458aSBarry Smith if (im[i] >= rstart && im[i] < rend) { 430ab26458aSBarry Smith row = im[i] - rstart; 431ab26458aSBarry Smith for (j = 0; j < n; j++) { 43215b57d14SSatish Balay /* If NumCol = 1 then a copy is not required */ 43315b57d14SSatish Balay if ((roworiented) && (n == 1)) { 434f15d580aSBarry Smith barray = (MatScalar *)v + i * bs2; 43515b57d14SSatish Balay } else if ((!roworiented) && (m == 1)) { 436f15d580aSBarry Smith barray = (MatScalar *)v + j * bs2; 43715b57d14SSatish Balay } else { /* Here a copy is required */ 438ab26458aSBarry Smith if (roworiented) { 43953ef36baSBarry Smith value = v + (i * (stepval + bs) + j) * bs; 440ab26458aSBarry Smith } else { 44153ef36baSBarry Smith value = v + (j * (stepval + bs) + i) * bs; 442abef11f7SSatish Balay } 44353ef36baSBarry Smith for (ii = 0; ii < bs; ii++, value += bs + stepval) { 44426fbe8dcSKarl Rupp for (jj = 0; jj < bs; jj++) barray[jj] = value[jj]; 44553ef36baSBarry Smith barray += bs; 44647513183SBarry Smith } 44730793edcSSatish Balay barray -= bs2; 44815b57d14SSatish Balay } 449abef11f7SSatish Balay 450abef11f7SSatish Balay if (in[j] >= cstart && in[j] < cend) { 451abef11f7SSatish Balay col = in[j] - cstart; 4529566063dSJacob Faibussowitsch PetscCall(MatSetValuesBlocked_SeqBAIJ_Inlined(baij->A, row, col, barray, addv, im[i], in[j])); 453f7d195e4SLawrence Mitchell } else if (in[j] < 0) { 454f7d195e4SLawrence Mitchell continue; 455f7d195e4SLawrence Mitchell } else { 456f7d195e4SLawrence Mitchell PetscCheck(in[j] < baij->Nbs, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Block indexed column too large %" PetscInt_FMT " max %" PetscInt_FMT, in[j], baij->Nbs - 1); 457ab26458aSBarry Smith if (mat->was_assembled) { 45848a46eb9SPierre Jolivet if (!baij->colmap) PetscCall(MatCreateColmap_MPIBAIJ_Private(mat)); 459a5eb4965SSatish Balay 460aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 461eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIGetWithDefault(baij->colmap, in[j] + 1, 0, &col)); 462b758ae8cSBarry Smith col = col < 1 ? -1 : (col - 1) / bs; 46348e59246SSatish Balay #else 464b758ae8cSBarry Smith col = baij->colmap[in[j]] < 1 ? -1 : (baij->colmap[in[j]] - 1) / bs; 46548e59246SSatish Balay #endif 466f4f49eeaSPierre Jolivet if (col < 0 && !((Mat_SeqBAIJ *)baij->B->data)->nonew) { 4679566063dSJacob Faibussowitsch PetscCall(MatDisAssemble_MPIBAIJ(mat)); 468ab26458aSBarry Smith col = in[j]; 4695f80ce2aSJacob Faibussowitsch } else PetscCheck(col >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new blocked indexed nonzero block (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", im[i], in[j]); 470db4deed7SKarl Rupp } else col = in[j]; 4719566063dSJacob Faibussowitsch PetscCall(MatSetValuesBlocked_SeqBAIJ_Inlined(baij->B, row, col, barray, addv, im[i], in[j])); 472ab26458aSBarry Smith } 473ab26458aSBarry Smith } 474d64ed03dSBarry Smith } else { 4755f80ce2aSJacob Faibussowitsch PetscCheck(!mat->nooffprocentries, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Setting off process block indexed row %" PetscInt_FMT " even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set", im[i]); 476ab26458aSBarry Smith if (!baij->donotstash) { 477ff2fd236SBarry Smith if (roworiented) { 4789566063dSJacob Faibussowitsch PetscCall(MatStashValuesRowBlocked_Private(&mat->bstash, im[i], n, in, v, m, n, i)); 479ff2fd236SBarry Smith } else { 4809566063dSJacob Faibussowitsch PetscCall(MatStashValuesColBlocked_Private(&mat->bstash, im[i], n, in, v, m, n, i)); 481ff2fd236SBarry Smith } 482abef11f7SSatish Balay } 483ab26458aSBarry Smith } 484ab26458aSBarry Smith } 4853ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 486ab26458aSBarry Smith } 4876fa18ffdSBarry Smith 4880bdbc534SSatish Balay #define HASH_KEY 0.6180339887 489b24ad042SBarry Smith #define HASH(size, key, tmp) (tmp = (key) * HASH_KEY, (PetscInt)((size) * (tmp - (PetscInt)tmp))) 490b24ad042SBarry Smith /* #define HASH(size,key) ((PetscInt)((size)*fmod(((key)*HASH_KEY),1))) */ 491b24ad042SBarry Smith /* #define HASH(size,key,tmp) ((PetscInt)((size)*fmod(((key)*HASH_KEY),1))) */ 49266976f2fSJacob Faibussowitsch static PetscErrorCode MatSetValues_MPIBAIJ_HT(Mat mat, PetscInt m, const PetscInt im[], PetscInt n, const PetscInt in[], const PetscScalar v[], InsertMode addv) 493d71ae5a4SJacob Faibussowitsch { 4940bdbc534SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 495ace3abfcSBarry Smith PetscBool roworiented = baij->roworiented; 496b24ad042SBarry Smith PetscInt i, j, row, col; 497d0f46423SBarry Smith PetscInt rstart_orig = mat->rmap->rstart; 498d0f46423SBarry Smith PetscInt rend_orig = mat->rmap->rend, Nbs = baij->Nbs; 499d0f46423SBarry Smith PetscInt h1, key, size = baij->ht_size, bs = mat->rmap->bs, *HT = baij->ht, idx; 500329f5518SBarry Smith PetscReal tmp; 5013eda8832SBarry Smith MatScalar **HD = baij->hd, value; 502b24ad042SBarry Smith PetscInt total_ct = baij->ht_total_ct, insert_ct = baij->ht_insert_ct; 5030bdbc534SSatish Balay 5040bdbc534SSatish Balay PetscFunctionBegin; 5050bdbc534SSatish Balay for (i = 0; i < m; i++) { 50676bd3646SJed Brown if (PetscDefined(USE_DEBUG)) { 5075f80ce2aSJacob Faibussowitsch PetscCheck(im[i] >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Negative row"); 5085f80ce2aSJacob Faibussowitsch PetscCheck(im[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, im[i], mat->rmap->N - 1); 50976bd3646SJed Brown } 5100bdbc534SSatish Balay row = im[i]; 511c2760754SSatish Balay if (row >= rstart_orig && row < rend_orig) { 5120bdbc534SSatish Balay for (j = 0; j < n; j++) { 5130bdbc534SSatish Balay col = in[j]; 514db4deed7SKarl Rupp if (roworiented) value = v[i * n + j]; 515db4deed7SKarl Rupp else value = v[i + j * m]; 516b24ad042SBarry Smith /* Look up PetscInto the Hash Table */ 517c2760754SSatish Balay key = (row / bs) * Nbs + (col / bs) + 1; 518c2760754SSatish Balay h1 = HASH(size, key, tmp); 5190bdbc534SSatish Balay 520c2760754SSatish Balay idx = h1; 52176bd3646SJed Brown if (PetscDefined(USE_DEBUG)) { 522187ce0cbSSatish Balay insert_ct++; 523187ce0cbSSatish Balay total_ct++; 524187ce0cbSSatish Balay if (HT[idx] != key) { 525fbccb6d4SPierre Jolivet for (idx = h1; (idx < size) && (HT[idx] != key); idx++, total_ct++); 526187ce0cbSSatish Balay if (idx == size) { 527fbccb6d4SPierre Jolivet for (idx = 0; (idx < h1) && (HT[idx] != key); idx++, total_ct++); 5285f80ce2aSJacob Faibussowitsch PetscCheck(idx != h1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "(%" PetscInt_FMT ",%" PetscInt_FMT ") has no entry in the hash table", row, col); 529187ce0cbSSatish Balay } 530187ce0cbSSatish Balay } 53176bd3646SJed Brown } else if (HT[idx] != key) { 532fbccb6d4SPierre Jolivet for (idx = h1; (idx < size) && (HT[idx] != key); idx++); 533c2760754SSatish Balay if (idx == size) { 534fbccb6d4SPierre Jolivet for (idx = 0; (idx < h1) && (HT[idx] != key); idx++); 5355f80ce2aSJacob Faibussowitsch PetscCheck(idx != h1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "(%" PetscInt_FMT ",%" PetscInt_FMT ") has no entry in the hash table", row, col); 536c2760754SSatish Balay } 537c2760754SSatish Balay } 538c2760754SSatish Balay /* A HASH table entry is found, so insert the values at the correct address */ 539c2760754SSatish Balay if (addv == ADD_VALUES) *(HD[idx] + (col % bs) * bs + (row % bs)) += value; 540c2760754SSatish Balay else *(HD[idx] + (col % bs) * bs + (row % bs)) = value; 5410bdbc534SSatish Balay } 54226fbe8dcSKarl Rupp } else if (!baij->donotstash) { 543ff2fd236SBarry Smith if (roworiented) { 5449566063dSJacob Faibussowitsch PetscCall(MatStashValuesRow_Private(&mat->stash, im[i], n, in, v + i * n, PETSC_FALSE)); 545ff2fd236SBarry Smith } else { 5469566063dSJacob Faibussowitsch PetscCall(MatStashValuesCol_Private(&mat->stash, im[i], n, in, v + i, m, PETSC_FALSE)); 5470bdbc534SSatish Balay } 5480bdbc534SSatish Balay } 5490bdbc534SSatish Balay } 55076bd3646SJed Brown if (PetscDefined(USE_DEBUG)) { 551abf3b562SBarry Smith baij->ht_total_ct += total_ct; 552abf3b562SBarry Smith baij->ht_insert_ct += insert_ct; 55376bd3646SJed Brown } 5543ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5550bdbc534SSatish Balay } 5560bdbc534SSatish Balay 55766976f2fSJacob Faibussowitsch static PetscErrorCode MatSetValuesBlocked_MPIBAIJ_HT(Mat mat, PetscInt m, const PetscInt im[], PetscInt n, const PetscInt in[], const PetscScalar v[], InsertMode addv) 558d71ae5a4SJacob Faibussowitsch { 5590bdbc534SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 560ace3abfcSBarry Smith PetscBool roworiented = baij->roworiented; 561b24ad042SBarry Smith PetscInt i, j, ii, jj, row, col; 562899cda47SBarry Smith PetscInt rstart = baij->rstartbs; 563d0f46423SBarry Smith PetscInt rend = mat->rmap->rend, stepval, bs = mat->rmap->bs, bs2 = baij->bs2, nbs2 = n * bs2; 564b24ad042SBarry Smith PetscInt h1, key, size = baij->ht_size, idx, *HT = baij->ht, Nbs = baij->Nbs; 565329f5518SBarry Smith PetscReal tmp; 5663eda8832SBarry Smith MatScalar **HD = baij->hd, *baij_a; 567dd6ea824SBarry Smith const PetscScalar *v_t, *value; 568b24ad042SBarry Smith PetscInt total_ct = baij->ht_total_ct, insert_ct = baij->ht_insert_ct; 5690bdbc534SSatish Balay 570d0a41580SSatish Balay PetscFunctionBegin; 57126fbe8dcSKarl Rupp if (roworiented) stepval = (n - 1) * bs; 57226fbe8dcSKarl Rupp else stepval = (m - 1) * bs; 57326fbe8dcSKarl Rupp 5740bdbc534SSatish Balay for (i = 0; i < m; i++) { 57576bd3646SJed Brown if (PetscDefined(USE_DEBUG)) { 5765f80ce2aSJacob Faibussowitsch PetscCheck(im[i] >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Negative row: %" PetscInt_FMT, im[i]); 5775f80ce2aSJacob Faibussowitsch PetscCheck(im[i] < baij->Mbs, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, im[i], baij->Mbs - 1); 57876bd3646SJed Brown } 5790bdbc534SSatish Balay row = im[i]; 580ab715e2cSSatish Balay v_t = v + i * nbs2; 581c2760754SSatish Balay if (row >= rstart && row < rend) { 5820bdbc534SSatish Balay for (j = 0; j < n; j++) { 5830bdbc534SSatish Balay col = in[j]; 5840bdbc534SSatish Balay 5850bdbc534SSatish Balay /* Look up into the Hash Table */ 586c2760754SSatish Balay key = row * Nbs + col + 1; 587c2760754SSatish Balay h1 = HASH(size, key, tmp); 5880bdbc534SSatish Balay 589c2760754SSatish Balay idx = h1; 59076bd3646SJed Brown if (PetscDefined(USE_DEBUG)) { 591187ce0cbSSatish Balay total_ct++; 592187ce0cbSSatish Balay insert_ct++; 593187ce0cbSSatish Balay if (HT[idx] != key) { 594fbccb6d4SPierre Jolivet for (idx = h1; (idx < size) && (HT[idx] != key); idx++, total_ct++); 595187ce0cbSSatish Balay if (idx == size) { 596fbccb6d4SPierre Jolivet for (idx = 0; (idx < h1) && (HT[idx] != key); idx++, total_ct++); 5975f80ce2aSJacob Faibussowitsch PetscCheck(idx != h1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "(%" PetscInt_FMT ",%" PetscInt_FMT ") has no entry in the hash table", row, col); 598187ce0cbSSatish Balay } 599187ce0cbSSatish Balay } 60076bd3646SJed Brown } else if (HT[idx] != key) { 601fbccb6d4SPierre Jolivet for (idx = h1; (idx < size) && (HT[idx] != key); idx++); 602c2760754SSatish Balay if (idx == size) { 603fbccb6d4SPierre Jolivet for (idx = 0; (idx < h1) && (HT[idx] != key); idx++); 6045f80ce2aSJacob Faibussowitsch PetscCheck(idx != h1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "(%" PetscInt_FMT ",%" PetscInt_FMT ") has no entry in the hash table", row, col); 605c2760754SSatish Balay } 606c2760754SSatish Balay } 607c2760754SSatish Balay baij_a = HD[idx]; 6080bdbc534SSatish Balay if (roworiented) { 609c2760754SSatish Balay /*value = v + i*(stepval+bs)*bs + j*bs;*/ 610187ce0cbSSatish Balay /* value = v + (i*(stepval+bs)+j)*bs; */ 611187ce0cbSSatish Balay value = v_t; 612187ce0cbSSatish Balay v_t += bs; 613fef45726SSatish Balay if (addv == ADD_VALUES) { 614c2760754SSatish Balay for (ii = 0; ii < bs; ii++, value += stepval) { 615ad540459SPierre Jolivet for (jj = ii; jj < bs2; jj += bs) baij_a[jj] += *value++; 616b4cc0f5aSSatish Balay } 617fef45726SSatish Balay } else { 618c2760754SSatish Balay for (ii = 0; ii < bs; ii++, value += stepval) { 619ad540459SPierre Jolivet for (jj = ii; jj < bs2; jj += bs) baij_a[jj] = *value++; 620fef45726SSatish Balay } 621fef45726SSatish Balay } 6220bdbc534SSatish Balay } else { 6230bdbc534SSatish Balay value = v + j * (stepval + bs) * bs + i * bs; 624fef45726SSatish Balay if (addv == ADD_VALUES) { 625b4cc0f5aSSatish Balay for (ii = 0; ii < bs; ii++, value += stepval, baij_a += bs) { 626ad540459SPierre Jolivet for (jj = 0; jj < bs; jj++) baij_a[jj] += *value++; 627fef45726SSatish Balay } 628fef45726SSatish Balay } else { 629fef45726SSatish Balay for (ii = 0; ii < bs; ii++, value += stepval, baij_a += bs) { 630ad540459SPierre Jolivet for (jj = 0; jj < bs; jj++) baij_a[jj] = *value++; 631b4cc0f5aSSatish Balay } 6320bdbc534SSatish Balay } 6330bdbc534SSatish Balay } 6340bdbc534SSatish Balay } 6350bdbc534SSatish Balay } else { 6360bdbc534SSatish Balay if (!baij->donotstash) { 6370bdbc534SSatish Balay if (roworiented) { 6389566063dSJacob Faibussowitsch PetscCall(MatStashValuesRowBlocked_Private(&mat->bstash, im[i], n, in, v, m, n, i)); 6390bdbc534SSatish Balay } else { 6409566063dSJacob Faibussowitsch PetscCall(MatStashValuesColBlocked_Private(&mat->bstash, im[i], n, in, v, m, n, i)); 6410bdbc534SSatish Balay } 6420bdbc534SSatish Balay } 6430bdbc534SSatish Balay } 6440bdbc534SSatish Balay } 64576bd3646SJed Brown if (PetscDefined(USE_DEBUG)) { 646abf3b562SBarry Smith baij->ht_total_ct += total_ct; 647abf3b562SBarry Smith baij->ht_insert_ct += insert_ct; 64876bd3646SJed Brown } 6493ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6500bdbc534SSatish Balay } 651133cdb44SSatish Balay 65266976f2fSJacob Faibussowitsch static PetscErrorCode MatGetValues_MPIBAIJ(Mat mat, PetscInt m, const PetscInt idxm[], PetscInt n, const PetscInt idxn[], PetscScalar v[]) 653d71ae5a4SJacob Faibussowitsch { 654d6de1c52SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 655d0f46423SBarry Smith PetscInt bs = mat->rmap->bs, i, j, bsrstart = mat->rmap->rstart, bsrend = mat->rmap->rend; 656d0f46423SBarry Smith PetscInt bscstart = mat->cmap->rstart, bscend = mat->cmap->rend, row, col, data; 657d6de1c52SSatish Balay 658133cdb44SSatish Balay PetscFunctionBegin; 659d6de1c52SSatish Balay for (i = 0; i < m; i++) { 66054c59aa7SJacob Faibussowitsch if (idxm[i] < 0) continue; /* negative row */ 66154c59aa7SJacob Faibussowitsch PetscCheck(idxm[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, idxm[i], mat->rmap->N - 1); 662966bd95aSPierre Jolivet PetscCheck(idxm[i] >= bsrstart && idxm[i] < bsrend, PETSC_COMM_SELF, PETSC_ERR_SUP, "Only local values currently supported"); 663d6de1c52SSatish Balay row = idxm[i] - bsrstart; 664d6de1c52SSatish Balay for (j = 0; j < n; j++) { 66554c59aa7SJacob Faibussowitsch if (idxn[j] < 0) continue; /* negative column */ 66654c59aa7SJacob Faibussowitsch PetscCheck(idxn[j] < mat->cmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, idxn[j], mat->cmap->N - 1); 667d6de1c52SSatish Balay if (idxn[j] >= bscstart && idxn[j] < bscend) { 668d6de1c52SSatish Balay col = idxn[j] - bscstart; 6699566063dSJacob Faibussowitsch PetscCall(MatGetValues_SeqBAIJ(baij->A, 1, &row, 1, &col, v + i * n + j)); 670d64ed03dSBarry Smith } else { 67148a46eb9SPierre Jolivet if (!baij->colmap) PetscCall(MatCreateColmap_MPIBAIJ_Private(mat)); 672aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 673eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIGetWithDefault(baij->colmap, idxn[j] / bs + 1, 0, &data)); 674fa46199cSSatish Balay data--; 67548e59246SSatish Balay #else 67648e59246SSatish Balay data = baij->colmap[idxn[j] / bs] - 1; 67748e59246SSatish Balay #endif 678966bd95aSPierre Jolivet if (data < 0 || baij->garray[data / bs] != idxn[j] / bs) *(v + i * n + j) = 0.0; 679d9d09a02SSatish Balay else { 68048e59246SSatish Balay col = data + idxn[j] % bs; 6819566063dSJacob Faibussowitsch PetscCall(MatGetValues_SeqBAIJ(baij->B, 1, &row, 1, &col, v + i * n + j)); 682d6de1c52SSatish Balay } 683d6de1c52SSatish Balay } 684d6de1c52SSatish Balay } 685d6de1c52SSatish Balay } 6863ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 687d6de1c52SSatish Balay } 688d6de1c52SSatish Balay 68966976f2fSJacob Faibussowitsch static PetscErrorCode MatNorm_MPIBAIJ(Mat mat, NormType type, PetscReal *nrm) 690d71ae5a4SJacob Faibussowitsch { 691d6de1c52SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 692d6de1c52SSatish Balay Mat_SeqBAIJ *amat = (Mat_SeqBAIJ *)baij->A->data, *bmat = (Mat_SeqBAIJ *)baij->B->data; 693d0f46423SBarry Smith PetscInt i, j, bs2 = baij->bs2, bs = baij->A->rmap->bs, nz, row, col; 694329f5518SBarry Smith PetscReal sum = 0.0; 6953eda8832SBarry Smith MatScalar *v; 696d6de1c52SSatish Balay 697d64ed03dSBarry Smith PetscFunctionBegin; 698d6de1c52SSatish Balay if (baij->size == 1) { 6999566063dSJacob Faibussowitsch PetscCall(MatNorm(baij->A, type, nrm)); 700d6de1c52SSatish Balay } else { 701d6de1c52SSatish Balay if (type == NORM_FROBENIUS) { 702d6de1c52SSatish Balay v = amat->a; 7038a62d963SHong Zhang nz = amat->nz * bs2; 7048a62d963SHong Zhang for (i = 0; i < nz; i++) { 7059371c9d4SSatish Balay sum += PetscRealPart(PetscConj(*v) * (*v)); 7069371c9d4SSatish Balay v++; 707d6de1c52SSatish Balay } 708d6de1c52SSatish Balay v = bmat->a; 7098a62d963SHong Zhang nz = bmat->nz * bs2; 7108a62d963SHong Zhang for (i = 0; i < nz; i++) { 7119371c9d4SSatish Balay sum += PetscRealPart(PetscConj(*v) * (*v)); 7129371c9d4SSatish Balay v++; 713d6de1c52SSatish Balay } 714462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&sum, nrm, 1, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)mat))); 7158f1a2a5eSBarry Smith *nrm = PetscSqrtReal(*nrm); 7168a62d963SHong Zhang } else if (type == NORM_1) { /* max column sum */ 717*75dbe01dSPierre Jolivet Vec col; 718*75dbe01dSPierre Jolivet PetscScalar *array; 719*75dbe01dSPierre Jolivet PetscInt *jj, *garray = baij->garray; 7206497c311SBarry Smith 721*75dbe01dSPierre Jolivet PetscCall(MatCreateVecs(mat, &col, NULL)); 722*75dbe01dSPierre Jolivet PetscCall(VecSet(col, 0.0)); 723*75dbe01dSPierre Jolivet PetscCall(VecGetArrayWrite(col, &array)); 7249371c9d4SSatish Balay v = amat->a; 7259371c9d4SSatish Balay jj = amat->j; 7268a62d963SHong Zhang for (i = 0; i < amat->nz; i++) { 7278a62d963SHong Zhang for (j = 0; j < bs; j++) { 728*75dbe01dSPierre Jolivet PetscInt col = bs * *jj + j; /* column index */ 729*75dbe01dSPierre Jolivet 730*75dbe01dSPierre Jolivet for (row = 0; row < bs; row++) array[col] += PetscAbsScalar(*v++); 7318a62d963SHong Zhang } 7328a62d963SHong Zhang jj++; 7338a62d963SHong Zhang } 734*75dbe01dSPierre Jolivet PetscCall(VecRestoreArrayWrite(col, &array)); 7359371c9d4SSatish Balay v = bmat->a; 7369371c9d4SSatish Balay jj = bmat->j; 7378a62d963SHong Zhang for (i = 0; i < bmat->nz; i++) { 7388a62d963SHong Zhang for (j = 0; j < bs; j++) { 739*75dbe01dSPierre Jolivet PetscScalar tmp = 0.0; 740*75dbe01dSPierre Jolivet 741*75dbe01dSPierre Jolivet for (row = 0; row < bs; row++) tmp += PetscAbsScalar(*v++); 742*75dbe01dSPierre Jolivet PetscCall(VecSetValue(col, bs * garray[*jj] + j, tmp, ADD_VALUES)); 7438a62d963SHong Zhang } 7448a62d963SHong Zhang jj++; 7458a62d963SHong Zhang } 746*75dbe01dSPierre Jolivet PetscCall(VecAssemblyBegin(col)); 747*75dbe01dSPierre Jolivet PetscCall(VecAssemblyEnd(col)); 748*75dbe01dSPierre Jolivet PetscCall(VecNorm(col, NORM_INFINITY, nrm)); 749*75dbe01dSPierre Jolivet PetscCall(VecDestroy(&col)); 7508a62d963SHong Zhang } else if (type == NORM_INFINITY) { /* max row sum */ 751577dd1f9SKris Buschelman PetscReal *sums; 7529566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(bs, &sums)); 7538a62d963SHong Zhang sum = 0.0; 7548a62d963SHong Zhang for (j = 0; j < amat->mbs; j++) { 7558a62d963SHong Zhang for (row = 0; row < bs; row++) sums[row] = 0.0; 7568a62d963SHong Zhang v = amat->a + bs2 * amat->i[j]; 7578a62d963SHong Zhang nz = amat->i[j + 1] - amat->i[j]; 7588a62d963SHong Zhang for (i = 0; i < nz; i++) { 7598a62d963SHong Zhang for (col = 0; col < bs; col++) { 7608a62d963SHong Zhang for (row = 0; row < bs; row++) { 7619371c9d4SSatish Balay sums[row] += PetscAbsScalar(*v); 7629371c9d4SSatish Balay v++; 7638a62d963SHong Zhang } 7648a62d963SHong Zhang } 7658a62d963SHong Zhang } 7668a62d963SHong Zhang v = bmat->a + bs2 * bmat->i[j]; 7678a62d963SHong Zhang nz = bmat->i[j + 1] - bmat->i[j]; 7688a62d963SHong Zhang for (i = 0; i < nz; i++) { 7698a62d963SHong Zhang for (col = 0; col < bs; col++) { 7708a62d963SHong Zhang for (row = 0; row < bs; row++) { 7719371c9d4SSatish Balay sums[row] += PetscAbsScalar(*v); 7729371c9d4SSatish Balay v++; 7738a62d963SHong Zhang } 7748a62d963SHong Zhang } 7758a62d963SHong Zhang } 7768a62d963SHong Zhang for (row = 0; row < bs; row++) { 7778a62d963SHong Zhang if (sums[row] > sum) sum = sums[row]; 7788a62d963SHong Zhang } 7798a62d963SHong Zhang } 780462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&sum, nrm, 1, MPIU_REAL, MPIU_MAX, PetscObjectComm((PetscObject)mat))); 7819566063dSJacob Faibussowitsch PetscCall(PetscFree(sums)); 782ce94432eSBarry Smith } else SETERRQ(PetscObjectComm((PetscObject)mat), PETSC_ERR_SUP, "No support for this norm yet"); 783d64ed03dSBarry Smith } 7843ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 785d6de1c52SSatish Balay } 78657b952d6SSatish Balay 787fef45726SSatish Balay /* 788fef45726SSatish Balay Creates the hash table, and sets the table 789fef45726SSatish Balay This table is created only once. 79046091a0eSPierre Jolivet If new entries need to be added to the matrix 791fef45726SSatish Balay then the hash table has to be destroyed and 792fef45726SSatish Balay recreated. 793fef45726SSatish Balay */ 79466976f2fSJacob Faibussowitsch static PetscErrorCode MatCreateHashTable_MPIBAIJ_Private(Mat mat, PetscReal factor) 795d71ae5a4SJacob Faibussowitsch { 796596b8d2eSBarry Smith Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 797596b8d2eSBarry Smith Mat A = baij->A, B = baij->B; 798596b8d2eSBarry Smith Mat_SeqBAIJ *a = (Mat_SeqBAIJ *)A->data, *b = (Mat_SeqBAIJ *)B->data; 799b24ad042SBarry Smith PetscInt i, j, k, nz = a->nz + b->nz, h1, *ai = a->i, *aj = a->j, *bi = b->i, *bj = b->j; 800fca92195SBarry Smith PetscInt ht_size, bs2 = baij->bs2, rstart = baij->rstartbs; 801899cda47SBarry Smith PetscInt cstart = baij->cstartbs, *garray = baij->garray, row, col, Nbs = baij->Nbs; 802b24ad042SBarry Smith PetscInt *HT, key; 8033eda8832SBarry Smith MatScalar **HD; 804329f5518SBarry Smith PetscReal tmp; 8056cf91177SBarry Smith #if defined(PETSC_USE_INFO) 806b24ad042SBarry Smith PetscInt ct = 0, max = 0; 8074a15367fSSatish Balay #endif 808fef45726SSatish Balay 809d64ed03dSBarry Smith PetscFunctionBegin; 8103ba16761SJacob Faibussowitsch if (baij->ht) PetscFunctionReturn(PETSC_SUCCESS); 811fef45726SSatish Balay 812fca92195SBarry Smith baij->ht_size = (PetscInt)(factor * nz); 813fca92195SBarry Smith ht_size = baij->ht_size; 8140bdbc534SSatish Balay 815fef45726SSatish Balay /* Allocate Memory for Hash Table */ 8169566063dSJacob Faibussowitsch PetscCall(PetscCalloc2(ht_size, &baij->hd, ht_size, &baij->ht)); 817b9e4cc15SSatish Balay HD = baij->hd; 818a07cd24cSSatish Balay HT = baij->ht; 819b9e4cc15SSatish Balay 820596b8d2eSBarry Smith /* Loop Over A */ 8210bdbc534SSatish Balay for (i = 0; i < a->mbs; i++) { 822596b8d2eSBarry Smith for (j = ai[i]; j < ai[i + 1]; j++) { 8230bdbc534SSatish Balay row = i + rstart; 8240bdbc534SSatish Balay col = aj[j] + cstart; 825596b8d2eSBarry Smith 826187ce0cbSSatish Balay key = row * Nbs + col + 1; 827fca92195SBarry Smith h1 = HASH(ht_size, key, tmp); 828fca92195SBarry Smith for (k = 0; k < ht_size; k++) { 829fca92195SBarry Smith if (!HT[(h1 + k) % ht_size]) { 830fca92195SBarry Smith HT[(h1 + k) % ht_size] = key; 831fca92195SBarry Smith HD[(h1 + k) % ht_size] = a->a + j * bs2; 832596b8d2eSBarry Smith break; 8336cf91177SBarry Smith #if defined(PETSC_USE_INFO) 834187ce0cbSSatish Balay } else { 835187ce0cbSSatish Balay ct++; 836187ce0cbSSatish Balay #endif 837596b8d2eSBarry Smith } 838187ce0cbSSatish Balay } 8396cf91177SBarry Smith #if defined(PETSC_USE_INFO) 840187ce0cbSSatish Balay if (k > max) max = k; 841187ce0cbSSatish Balay #endif 842596b8d2eSBarry Smith } 843596b8d2eSBarry Smith } 844596b8d2eSBarry Smith /* Loop Over B */ 8450bdbc534SSatish Balay for (i = 0; i < b->mbs; i++) { 846596b8d2eSBarry Smith for (j = bi[i]; j < bi[i + 1]; j++) { 8470bdbc534SSatish Balay row = i + rstart; 8480bdbc534SSatish Balay col = garray[bj[j]]; 849187ce0cbSSatish Balay key = row * Nbs + col + 1; 850fca92195SBarry Smith h1 = HASH(ht_size, key, tmp); 851fca92195SBarry Smith for (k = 0; k < ht_size; k++) { 852fca92195SBarry Smith if (!HT[(h1 + k) % ht_size]) { 853fca92195SBarry Smith HT[(h1 + k) % ht_size] = key; 854fca92195SBarry Smith HD[(h1 + k) % ht_size] = b->a + j * bs2; 855596b8d2eSBarry Smith break; 8566cf91177SBarry Smith #if defined(PETSC_USE_INFO) 857187ce0cbSSatish Balay } else { 858187ce0cbSSatish Balay ct++; 859187ce0cbSSatish Balay #endif 860596b8d2eSBarry Smith } 861187ce0cbSSatish Balay } 8626cf91177SBarry Smith #if defined(PETSC_USE_INFO) 863187ce0cbSSatish Balay if (k > max) max = k; 864187ce0cbSSatish Balay #endif 865596b8d2eSBarry Smith } 866596b8d2eSBarry Smith } 867596b8d2eSBarry Smith 868596b8d2eSBarry Smith /* Print Summary */ 8696cf91177SBarry Smith #if defined(PETSC_USE_INFO) 870fca92195SBarry Smith for (i = 0, j = 0; i < ht_size; i++) { 87126fbe8dcSKarl Rupp if (HT[i]) j++; 872c38d4ed2SBarry Smith } 873835f2295SStefano Zampini PetscCall(PetscInfo(mat, "Average Search = %5.2g,max search = %" PetscInt_FMT "\n", (!j) ? 0.0 : (double)(((PetscReal)(ct + j)) / j), max)); 874187ce0cbSSatish Balay #endif 8753ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 876596b8d2eSBarry Smith } 87757b952d6SSatish Balay 87866976f2fSJacob Faibussowitsch static PetscErrorCode MatAssemblyBegin_MPIBAIJ(Mat mat, MatAssemblyType mode) 879d71ae5a4SJacob Faibussowitsch { 880bbb85fb3SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 881b24ad042SBarry Smith PetscInt nstash, reallocs; 882bbb85fb3SSatish Balay 883bbb85fb3SSatish Balay PetscFunctionBegin; 8843ba16761SJacob Faibussowitsch if (baij->donotstash || mat->nooffprocentries) PetscFunctionReturn(PETSC_SUCCESS); 885bbb85fb3SSatish Balay 8869566063dSJacob Faibussowitsch PetscCall(MatStashScatterBegin_Private(mat, &mat->stash, mat->rmap->range)); 8879566063dSJacob Faibussowitsch PetscCall(MatStashScatterBegin_Private(mat, &mat->bstash, baij->rangebs)); 8889566063dSJacob Faibussowitsch PetscCall(MatStashGetInfo_Private(&mat->stash, &nstash, &reallocs)); 8899566063dSJacob Faibussowitsch PetscCall(PetscInfo(mat, "Stash has %" PetscInt_FMT " entries,uses %" PetscInt_FMT " mallocs.\n", nstash, reallocs)); 8909566063dSJacob Faibussowitsch PetscCall(MatStashGetInfo_Private(&mat->bstash, &nstash, &reallocs)); 8919566063dSJacob Faibussowitsch PetscCall(PetscInfo(mat, "Block-Stash has %" PetscInt_FMT " entries, uses %" PetscInt_FMT " mallocs.\n", nstash, reallocs)); 8923ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 893bbb85fb3SSatish Balay } 894bbb85fb3SSatish Balay 89566976f2fSJacob Faibussowitsch static PetscErrorCode MatAssemblyEnd_MPIBAIJ(Mat mat, MatAssemblyType mode) 896d71ae5a4SJacob Faibussowitsch { 897bbb85fb3SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 89891c97fd4SSatish Balay Mat_SeqBAIJ *a = (Mat_SeqBAIJ *)baij->A->data; 899b24ad042SBarry Smith PetscInt i, j, rstart, ncols, flg, bs2 = baij->bs2; 900e44c0bd4SBarry Smith PetscInt *row, *col; 901c0edf612SJunchao Zhang PetscBool r1, r2, r3, all_assembled; 9023eda8832SBarry Smith MatScalar *val; 903b24ad042SBarry Smith PetscMPIInt n; 904bbb85fb3SSatish Balay 905bbb85fb3SSatish Balay PetscFunctionBegin; 9065fd66863SKarl Rupp /* do not use 'b=(Mat_SeqBAIJ*)baij->B->data' as B can be reset in disassembly */ 9074cb17eb5SBarry Smith if (!baij->donotstash && !mat->nooffprocentries) { 908a2d1c673SSatish Balay while (1) { 9099566063dSJacob Faibussowitsch PetscCall(MatStashScatterGetMesg_Private(&mat->stash, &n, &row, &col, &val, &flg)); 910a2d1c673SSatish Balay if (!flg) break; 911a2d1c673SSatish Balay 912bbb85fb3SSatish Balay for (i = 0; i < n;) { 913bbb85fb3SSatish Balay /* Now identify the consecutive vals belonging to the same row */ 91426fbe8dcSKarl Rupp for (j = i, rstart = row[j]; j < n; j++) { 91526fbe8dcSKarl Rupp if (row[j] != rstart) break; 91626fbe8dcSKarl Rupp } 917bbb85fb3SSatish Balay if (j < n) ncols = j - i; 918bbb85fb3SSatish Balay else ncols = n - i; 919bbb85fb3SSatish Balay /* Now assemble all these values with a single function call */ 9209566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPIBAIJ(mat, 1, row + i, ncols, col + i, val + i, mat->insertmode)); 921bbb85fb3SSatish Balay i = j; 922bbb85fb3SSatish Balay } 923bbb85fb3SSatish Balay } 9249566063dSJacob Faibussowitsch PetscCall(MatStashScatterEnd_Private(&mat->stash)); 925a2d1c673SSatish Balay /* Now process the block-stash. Since the values are stashed column-oriented, 9265e116b59SBarry Smith set the row-oriented flag to column-oriented, and after MatSetValues() 927a2d1c673SSatish Balay restore the original flags */ 928a2d1c673SSatish Balay r1 = baij->roworiented; 929a2d1c673SSatish Balay r2 = a->roworiented; 93091c97fd4SSatish Balay r3 = ((Mat_SeqBAIJ *)baij->B->data)->roworiented; 93126fbe8dcSKarl Rupp 9327c922b88SBarry Smith baij->roworiented = PETSC_FALSE; 9337c922b88SBarry Smith a->roworiented = PETSC_FALSE; 934f4f49eeaSPierre Jolivet ((Mat_SeqBAIJ *)baij->B->data)->roworiented = PETSC_FALSE; 935a2d1c673SSatish Balay while (1) { 9369566063dSJacob Faibussowitsch PetscCall(MatStashScatterGetMesg_Private(&mat->bstash, &n, &row, &col, &val, &flg)); 937a2d1c673SSatish Balay if (!flg) break; 938a2d1c673SSatish Balay 939a2d1c673SSatish Balay for (i = 0; i < n;) { 940a2d1c673SSatish Balay /* Now identify the consecutive vals belonging to the same row */ 94126fbe8dcSKarl Rupp for (j = i, rstart = row[j]; j < n; j++) { 94226fbe8dcSKarl Rupp if (row[j] != rstart) break; 94326fbe8dcSKarl Rupp } 944a2d1c673SSatish Balay if (j < n) ncols = j - i; 945a2d1c673SSatish Balay else ncols = n - i; 9469566063dSJacob Faibussowitsch PetscCall(MatSetValuesBlocked_MPIBAIJ(mat, 1, row + i, ncols, col + i, val + i * bs2, mat->insertmode)); 947a2d1c673SSatish Balay i = j; 948a2d1c673SSatish Balay } 949a2d1c673SSatish Balay } 9509566063dSJacob Faibussowitsch PetscCall(MatStashScatterEnd_Private(&mat->bstash)); 95126fbe8dcSKarl Rupp 952a2d1c673SSatish Balay baij->roworiented = r1; 953a2d1c673SSatish Balay a->roworiented = r2; 9545e116b59SBarry Smith ((Mat_SeqBAIJ *)baij->B->data)->roworiented = r3; 955bbb85fb3SSatish Balay } 956bbb85fb3SSatish Balay 9579566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(baij->A, mode)); 9589566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(baij->A, mode)); 959bbb85fb3SSatish Balay 960b638e6b4SJunchao Zhang /* determine if any process has disassembled, if so we must 9616aad120cSJose E. Roman also disassemble ourselves, in order that we may reassemble. */ 962bbb85fb3SSatish Balay /* 963bbb85fb3SSatish Balay if nonzero structure of submatrix B cannot change then we know that 964b638e6b4SJunchao Zhang no process disassembled thus we can skip this stuff 965bbb85fb3SSatish Balay */ 966bbb85fb3SSatish Balay if (!((Mat_SeqBAIJ *)baij->B->data)->nonew) { 9675440e5dcSBarry Smith PetscCallMPI(MPIU_Allreduce(&mat->was_assembled, &all_assembled, 1, MPI_C_BOOL, MPI_LAND, PetscObjectComm((PetscObject)mat))); 968c0edf612SJunchao Zhang if (mat->was_assembled && !all_assembled) PetscCall(MatDisAssemble_MPIBAIJ(mat)); 969bbb85fb3SSatish Balay } 970bbb85fb3SSatish Balay 97148a46eb9SPierre Jolivet if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) PetscCall(MatSetUpMultiply_MPIBAIJ(mat)); 9729566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(baij->B, mode)); 9739566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(baij->B, mode)); 974bbb85fb3SSatish Balay 9756cf91177SBarry Smith #if defined(PETSC_USE_INFO) 976bbb85fb3SSatish Balay if (baij->ht && mode == MAT_FINAL_ASSEMBLY) { 9779566063dSJacob Faibussowitsch PetscCall(PetscInfo(mat, "Average Hash Table Search in MatSetValues = %5.2f\n", (double)((PetscReal)baij->ht_total_ct) / baij->ht_insert_ct)); 97826fbe8dcSKarl Rupp 979bbb85fb3SSatish Balay baij->ht_total_ct = 0; 980bbb85fb3SSatish Balay baij->ht_insert_ct = 0; 981bbb85fb3SSatish Balay } 982bbb85fb3SSatish Balay #endif 983bbb85fb3SSatish Balay if (baij->ht_flag && !baij->ht && mode == MAT_FINAL_ASSEMBLY) { 9849566063dSJacob Faibussowitsch PetscCall(MatCreateHashTable_MPIBAIJ_Private(mat, baij->ht_fact)); 98526fbe8dcSKarl Rupp 986bbb85fb3SSatish Balay mat->ops->setvalues = MatSetValues_MPIBAIJ_HT; 987bbb85fb3SSatish Balay mat->ops->setvaluesblocked = MatSetValuesBlocked_MPIBAIJ_HT; 988bbb85fb3SSatish Balay } 989bbb85fb3SSatish Balay 9909566063dSJacob Faibussowitsch PetscCall(PetscFree2(baij->rowvalues, baij->rowindices)); 99126fbe8dcSKarl Rupp 992f4259b30SLisandro Dalcin baij->rowvalues = NULL; 9934f9cfa9eSBarry Smith 9944f9cfa9eSBarry Smith /* if no new nonzero locations are allowed in matrix then only set the matrix state the first time through */ 995f4f49eeaSPierre Jolivet if ((!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) || !((Mat_SeqBAIJ *)baij->A->data)->nonew) { 996e56f5c9eSBarry Smith PetscObjectState state = baij->A->nonzerostate + baij->B->nonzerostate; 997462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&state, &mat->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)mat))); 998e56f5c9eSBarry Smith } 9993ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1000bbb85fb3SSatish Balay } 100157b952d6SSatish Balay 10029804daf3SBarry Smith #include <petscdraw.h> 1003d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatView_MPIBAIJ_ASCIIorDraworSocket(Mat mat, PetscViewer viewer) 1004d71ae5a4SJacob Faibussowitsch { 100557b952d6SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 10067da1fb6eSBarry Smith PetscMPIInt rank = baij->rank; 1007d0f46423SBarry Smith PetscInt bs = mat->rmap->bs; 10089f196a02SMartin Diehl PetscBool isascii, isdraw; 1009b0a32e0cSBarry Smith PetscViewer sviewer; 1010f3ef73ceSBarry Smith PetscViewerFormat format; 101157b952d6SSatish Balay 1012d64ed03dSBarry Smith PetscFunctionBegin; 10139f196a02SMartin Diehl PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &isascii)); 10149566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERDRAW, &isdraw)); 10159f196a02SMartin Diehl if (isascii) { 10169566063dSJacob Faibussowitsch PetscCall(PetscViewerGetFormat(viewer, &format)); 1017456192e2SBarry Smith if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 10184e220ebcSLois Curfman McInnes MatInfo info; 10199566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)mat), &rank)); 10209566063dSJacob Faibussowitsch PetscCall(MatGetInfo(mat, MAT_LOCAL, &info)); 10219566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPushSynchronized(viewer)); 10229371c9d4SSatish Balay PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] Local rows %" PetscInt_FMT " nz %" PetscInt_FMT " nz alloced %" PetscInt_FMT " bs %" PetscInt_FMT " mem %g\n", rank, mat->rmap->n, (PetscInt)info.nz_used, (PetscInt)info.nz_allocated, 1023835f2295SStefano Zampini mat->rmap->bs, info.memory)); 10249566063dSJacob Faibussowitsch PetscCall(MatGetInfo(baij->A, MAT_LOCAL, &info)); 10259566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] on-diagonal part: nz %" PetscInt_FMT " \n", rank, (PetscInt)info.nz_used)); 10269566063dSJacob Faibussowitsch PetscCall(MatGetInfo(baij->B, MAT_LOCAL, &info)); 10279566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] off-diagonal part: nz %" PetscInt_FMT " \n", rank, (PetscInt)info.nz_used)); 10289566063dSJacob Faibussowitsch PetscCall(PetscViewerFlush(viewer)); 10299566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPopSynchronized(viewer)); 10309566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "Information on VecScatter used in matrix-vector product: \n")); 10319566063dSJacob Faibussowitsch PetscCall(VecScatterView(baij->Mvctx, viewer)); 10323ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1033fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_INFO) { 10349566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, " block size is %" PetscInt_FMT "\n", bs)); 10353ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 103604929863SHong Zhang } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) { 10373ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 103857b952d6SSatish Balay } 103957b952d6SSatish Balay } 104057b952d6SSatish Balay 10410f5bd95cSBarry Smith if (isdraw) { 1042b0a32e0cSBarry Smith PetscDraw draw; 1043ace3abfcSBarry Smith PetscBool isnull; 10449566063dSJacob Faibussowitsch PetscCall(PetscViewerDrawGetDraw(viewer, 0, &draw)); 10459566063dSJacob Faibussowitsch PetscCall(PetscDrawIsNull(draw, &isnull)); 10463ba16761SJacob Faibussowitsch if (isnull) PetscFunctionReturn(PETSC_SUCCESS); 104757b952d6SSatish Balay } 104857b952d6SSatish Balay 10497da1fb6eSBarry Smith { 105057b952d6SSatish Balay /* assemble the entire matrix onto first processor. */ 105157b952d6SSatish Balay Mat A; 105257b952d6SSatish Balay Mat_SeqBAIJ *Aloc; 1053d0f46423SBarry Smith PetscInt M = mat->rmap->N, N = mat->cmap->N, *ai, *aj, col, i, j, k, *rvals, mbs = baij->mbs; 10543eda8832SBarry Smith MatScalar *a; 10553e219373SBarry Smith const char *matname; 105657b952d6SSatish Balay 1057f204ca49SKris Buschelman /* Here we are creating a temporary matrix, so will assume MPIBAIJ is acceptable */ 1058f204ca49SKris Buschelman /* Perhaps this should be the type of mat? */ 10599566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)mat), &A)); 1060dd400576SPatrick Sanan if (rank == 0) { 10619566063dSJacob Faibussowitsch PetscCall(MatSetSizes(A, M, N, M, N)); 1062d64ed03dSBarry Smith } else { 10639566063dSJacob Faibussowitsch PetscCall(MatSetSizes(A, 0, 0, M, N)); 106457b952d6SSatish Balay } 10659566063dSJacob Faibussowitsch PetscCall(MatSetType(A, MATMPIBAIJ)); 10669566063dSJacob Faibussowitsch PetscCall(MatMPIBAIJSetPreallocation(A, mat->rmap->bs, 0, NULL, 0, NULL)); 10679566063dSJacob Faibussowitsch PetscCall(MatSetOption(A, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_FALSE)); 106857b952d6SSatish Balay 106957b952d6SSatish Balay /* copy over the A part */ 107057b952d6SSatish Balay Aloc = (Mat_SeqBAIJ *)baij->A->data; 10719371c9d4SSatish Balay ai = Aloc->i; 10729371c9d4SSatish Balay aj = Aloc->j; 10739371c9d4SSatish Balay a = Aloc->a; 10749566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(bs, &rvals)); 107557b952d6SSatish Balay 107657b952d6SSatish Balay for (i = 0; i < mbs; i++) { 1077899cda47SBarry Smith rvals[0] = bs * (baij->rstartbs + i); 107826fbe8dcSKarl Rupp for (j = 1; j < bs; j++) rvals[j] = rvals[j - 1] + 1; 107957b952d6SSatish Balay for (j = ai[i]; j < ai[i + 1]; j++) { 1080899cda47SBarry Smith col = (baij->cstartbs + aj[j]) * bs; 108157b952d6SSatish Balay for (k = 0; k < bs; k++) { 10829566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPIBAIJ(A, bs, rvals, 1, &col, a, INSERT_VALUES)); 10839371c9d4SSatish Balay col++; 10849371c9d4SSatish Balay a += bs; 108557b952d6SSatish Balay } 108657b952d6SSatish Balay } 108757b952d6SSatish Balay } 108857b952d6SSatish Balay /* copy over the B part */ 108957b952d6SSatish Balay Aloc = (Mat_SeqBAIJ *)baij->B->data; 10909371c9d4SSatish Balay ai = Aloc->i; 10919371c9d4SSatish Balay aj = Aloc->j; 10929371c9d4SSatish Balay a = Aloc->a; 109357b952d6SSatish Balay for (i = 0; i < mbs; i++) { 1094899cda47SBarry Smith rvals[0] = bs * (baij->rstartbs + i); 109526fbe8dcSKarl Rupp for (j = 1; j < bs; j++) rvals[j] = rvals[j - 1] + 1; 109657b952d6SSatish Balay for (j = ai[i]; j < ai[i + 1]; j++) { 109757b952d6SSatish Balay col = baij->garray[aj[j]] * bs; 109857b952d6SSatish Balay for (k = 0; k < bs; k++) { 10999566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPIBAIJ(A, bs, rvals, 1, &col, a, INSERT_VALUES)); 11009371c9d4SSatish Balay col++; 11019371c9d4SSatish Balay a += bs; 110257b952d6SSatish Balay } 110357b952d6SSatish Balay } 110457b952d6SSatish Balay } 11059566063dSJacob Faibussowitsch PetscCall(PetscFree(rvals)); 11069566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(A, MAT_FINAL_ASSEMBLY)); 11079566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(A, MAT_FINAL_ASSEMBLY)); 110855843e3eSBarry Smith /* 110955843e3eSBarry Smith Everyone has to call to draw the matrix since the graphics waits are 1110b0a32e0cSBarry Smith synchronized across all processors that share the PetscDraw object 111155843e3eSBarry Smith */ 11129566063dSJacob Faibussowitsch PetscCall(PetscViewerGetSubViewer(viewer, PETSC_COMM_SELF, &sviewer)); 111323a3927dSBarry Smith if (((PetscObject)mat)->name) PetscCall(PetscObjectGetName((PetscObject)mat, &matname)); 1114dd400576SPatrick Sanan if (rank == 0) { 1115f4f49eeaSPierre Jolivet if (((PetscObject)mat)->name) PetscCall(PetscObjectSetName((PetscObject)((Mat_MPIBAIJ *)A->data)->A, matname)); 1116f4f49eeaSPierre Jolivet PetscCall(MatView_SeqBAIJ(((Mat_MPIBAIJ *)A->data)->A, sviewer)); 111757b952d6SSatish Balay } 11189566063dSJacob Faibussowitsch PetscCall(PetscViewerRestoreSubViewer(viewer, PETSC_COMM_SELF, &sviewer)); 11199566063dSJacob Faibussowitsch PetscCall(MatDestroy(&A)); 112057b952d6SSatish Balay } 11213ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 112257b952d6SSatish Balay } 112357b952d6SSatish Balay 1124618cc2edSLisandro Dalcin /* Used for both MPIBAIJ and MPISBAIJ matrices */ 1125d71ae5a4SJacob Faibussowitsch PetscErrorCode MatView_MPIBAIJ_Binary(Mat mat, PetscViewer viewer) 1126d71ae5a4SJacob Faibussowitsch { 1127b51a4376SLisandro Dalcin Mat_MPIBAIJ *aij = (Mat_MPIBAIJ *)mat->data; 1128b51a4376SLisandro Dalcin Mat_SeqBAIJ *A = (Mat_SeqBAIJ *)aij->A->data; 1129b51a4376SLisandro Dalcin Mat_SeqBAIJ *B = (Mat_SeqBAIJ *)aij->B->data; 1130b51a4376SLisandro Dalcin const PetscInt *garray = aij->garray; 113117a3732bSBarry Smith PetscInt header[4], M, N, m, rs, cs, bs, cnt, i, j, ja, jb, k, l; 11326497c311SBarry Smith PetscCount nz, hnz; 1133b51a4376SLisandro Dalcin PetscInt *rowlens, *colidxs; 1134b51a4376SLisandro Dalcin PetscScalar *matvals; 113517a3732bSBarry Smith PetscMPIInt rank; 1136660746e0SBarry Smith 1137660746e0SBarry Smith PetscFunctionBegin; 11389566063dSJacob Faibussowitsch PetscCall(PetscViewerSetUp(viewer)); 1139b51a4376SLisandro Dalcin 1140b51a4376SLisandro Dalcin M = mat->rmap->N; 1141b51a4376SLisandro Dalcin N = mat->cmap->N; 1142b51a4376SLisandro Dalcin m = mat->rmap->n; 1143b51a4376SLisandro Dalcin rs = mat->rmap->rstart; 1144b51a4376SLisandro Dalcin cs = mat->cmap->rstart; 1145b51a4376SLisandro Dalcin bs = mat->rmap->bs; 1146b51a4376SLisandro Dalcin nz = bs * bs * (A->nz + B->nz); 1147b51a4376SLisandro Dalcin 1148b51a4376SLisandro Dalcin /* write matrix header */ 1149660746e0SBarry Smith header[0] = MAT_FILE_CLASSID; 11509371c9d4SSatish Balay header[1] = M; 11519371c9d4SSatish Balay header[2] = N; 11526497c311SBarry Smith PetscCallMPI(MPI_Reduce(&nz, &hnz, 1, MPIU_COUNT, MPI_SUM, 0, PetscObjectComm((PetscObject)mat))); 115317a3732bSBarry Smith PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)mat), &rank)); 115417a3732bSBarry Smith if (rank == 0) PetscCall(PetscIntCast(hnz, &header[3])); 11559566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryWrite(viewer, header, 4, PETSC_INT)); 1156660746e0SBarry Smith 1157b51a4376SLisandro Dalcin /* fill in and store row lengths */ 11589566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m, &rowlens)); 1159b51a4376SLisandro Dalcin for (cnt = 0, i = 0; i < A->mbs; i++) 11609371c9d4SSatish Balay for (j = 0; j < bs; j++) rowlens[cnt++] = bs * (A->i[i + 1] - A->i[i] + B->i[i + 1] - B->i[i]); 11619566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryWriteAll(viewer, rowlens, m, rs, M, PETSC_INT)); 11629566063dSJacob Faibussowitsch PetscCall(PetscFree(rowlens)); 1163660746e0SBarry Smith 1164b51a4376SLisandro Dalcin /* fill in and store column indices */ 11659566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nz, &colidxs)); 1166b51a4376SLisandro Dalcin for (cnt = 0, i = 0; i < A->mbs; i++) { 1167b51a4376SLisandro Dalcin for (k = 0; k < bs; k++) { 1168b51a4376SLisandro Dalcin for (jb = B->i[i]; jb < B->i[i + 1]; jb++) { 1169b51a4376SLisandro Dalcin if (garray[B->j[jb]] > cs / bs) break; 11709371c9d4SSatish Balay for (l = 0; l < bs; l++) colidxs[cnt++] = bs * garray[B->j[jb]] + l; 1171660746e0SBarry Smith } 1172b51a4376SLisandro Dalcin for (ja = A->i[i]; ja < A->i[i + 1]; ja++) 11739371c9d4SSatish Balay for (l = 0; l < bs; l++) colidxs[cnt++] = bs * A->j[ja] + l + cs; 1174b51a4376SLisandro Dalcin for (; jb < B->i[i + 1]; jb++) 11759371c9d4SSatish Balay for (l = 0; l < bs; l++) colidxs[cnt++] = bs * garray[B->j[jb]] + l; 1176660746e0SBarry Smith } 1177660746e0SBarry Smith } 11786497c311SBarry Smith PetscCheck(cnt == nz, PETSC_COMM_SELF, PETSC_ERR_LIB, "Internal PETSc error: cnt = %" PetscInt_FMT " nz = %" PetscCount_FMT, cnt, nz); 11799566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryWriteAll(viewer, colidxs, nz, PETSC_DECIDE, PETSC_DECIDE, PETSC_INT)); 11809566063dSJacob Faibussowitsch PetscCall(PetscFree(colidxs)); 1181660746e0SBarry Smith 1182b51a4376SLisandro Dalcin /* fill in and store nonzero values */ 11839566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nz, &matvals)); 1184b51a4376SLisandro Dalcin for (cnt = 0, i = 0; i < A->mbs; i++) { 1185b51a4376SLisandro Dalcin for (k = 0; k < bs; k++) { 1186b51a4376SLisandro Dalcin for (jb = B->i[i]; jb < B->i[i + 1]; jb++) { 1187b51a4376SLisandro Dalcin if (garray[B->j[jb]] > cs / bs) break; 11889371c9d4SSatish Balay for (l = 0; l < bs; l++) matvals[cnt++] = B->a[bs * (bs * jb + l) + k]; 1189660746e0SBarry Smith } 1190b51a4376SLisandro Dalcin for (ja = A->i[i]; ja < A->i[i + 1]; ja++) 11919371c9d4SSatish Balay for (l = 0; l < bs; l++) matvals[cnt++] = A->a[bs * (bs * ja + l) + k]; 1192b51a4376SLisandro Dalcin for (; jb < B->i[i + 1]; jb++) 11939371c9d4SSatish Balay for (l = 0; l < bs; l++) matvals[cnt++] = B->a[bs * (bs * jb + l) + k]; 1194660746e0SBarry Smith } 1195b51a4376SLisandro Dalcin } 11969566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryWriteAll(viewer, matvals, nz, PETSC_DECIDE, PETSC_DECIDE, PETSC_SCALAR)); 11979566063dSJacob Faibussowitsch PetscCall(PetscFree(matvals)); 1198660746e0SBarry Smith 1199b51a4376SLisandro Dalcin /* write block size option to the viewer's .info file */ 12009566063dSJacob Faibussowitsch PetscCall(MatView_Binary_BlockSizes(mat, viewer)); 12013ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1202660746e0SBarry Smith } 1203660746e0SBarry Smith 1204d71ae5a4SJacob Faibussowitsch PetscErrorCode MatView_MPIBAIJ(Mat mat, PetscViewer viewer) 1205d71ae5a4SJacob Faibussowitsch { 12069f196a02SMartin Diehl PetscBool isascii, isdraw, issocket, isbinary; 120757b952d6SSatish Balay 1208d64ed03dSBarry Smith PetscFunctionBegin; 12099f196a02SMartin Diehl PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &isascii)); 12109566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERDRAW, &isdraw)); 12119566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERSOCKET, &issocket)); 12129566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary)); 1213ac530a7eSPierre Jolivet if (isascii || isdraw || issocket) PetscCall(MatView_MPIBAIJ_ASCIIorDraworSocket(mat, viewer)); 1214ac530a7eSPierre Jolivet else if (isbinary) PetscCall(MatView_MPIBAIJ_Binary(mat, viewer)); 12153ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 121657b952d6SSatish Balay } 121757b952d6SSatish Balay 121866976f2fSJacob Faibussowitsch static PetscErrorCode MatMult_MPIBAIJ(Mat A, Vec xx, Vec yy) 1219d71ae5a4SJacob Faibussowitsch { 1220cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 1221b24ad042SBarry Smith PetscInt nt; 1222cee3aa6bSSatish Balay 1223d64ed03dSBarry Smith PetscFunctionBegin; 12249566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(xx, &nt)); 12255f80ce2aSJacob Faibussowitsch PetscCheck(nt == A->cmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Incompatible partition of A and xx"); 12269566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(yy, &nt)); 1227da81f932SPierre Jolivet PetscCheck(nt == A->rmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Incompatible partition of A and yy"); 12289566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(a->Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD)); 12299566063dSJacob Faibussowitsch PetscCall((*a->A->ops->mult)(a->A, xx, yy)); 12309566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(a->Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD)); 12319566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multadd)(a->B, a->lvec, yy, yy)); 12323ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1233cee3aa6bSSatish Balay } 1234cee3aa6bSSatish Balay 123566976f2fSJacob Faibussowitsch static PetscErrorCode MatMultAdd_MPIBAIJ(Mat A, Vec xx, Vec yy, Vec zz) 1236d71ae5a4SJacob Faibussowitsch { 1237cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 1238d64ed03dSBarry Smith 1239d64ed03dSBarry Smith PetscFunctionBegin; 12409566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(a->Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD)); 12419566063dSJacob Faibussowitsch PetscCall((*a->A->ops->multadd)(a->A, xx, yy, zz)); 12429566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(a->Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD)); 12439566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multadd)(a->B, a->lvec, zz, zz)); 12443ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1245cee3aa6bSSatish Balay } 1246cee3aa6bSSatish Balay 124766976f2fSJacob Faibussowitsch static PetscErrorCode MatMultTranspose_MPIBAIJ(Mat A, Vec xx, Vec yy) 1248d71ae5a4SJacob Faibussowitsch { 1249cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 1250cee3aa6bSSatish Balay 1251d64ed03dSBarry Smith PetscFunctionBegin; 1252cee3aa6bSSatish Balay /* do nondiagonal part */ 12539566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multtranspose)(a->B, xx, a->lvec)); 1254cee3aa6bSSatish Balay /* do local part */ 12559566063dSJacob Faibussowitsch PetscCall((*a->A->ops->multtranspose)(a->A, xx, yy)); 1256e4a140f6SJunchao Zhang /* add partial results together */ 12579566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(a->Mvctx, a->lvec, yy, ADD_VALUES, SCATTER_REVERSE)); 12589566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(a->Mvctx, a->lvec, yy, ADD_VALUES, SCATTER_REVERSE)); 12593ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1260cee3aa6bSSatish Balay } 1261cee3aa6bSSatish Balay 126266976f2fSJacob Faibussowitsch static PetscErrorCode MatMultTransposeAdd_MPIBAIJ(Mat A, Vec xx, Vec yy, Vec zz) 1263d71ae5a4SJacob Faibussowitsch { 1264cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 1265cee3aa6bSSatish Balay 1266d64ed03dSBarry Smith PetscFunctionBegin; 1267cee3aa6bSSatish Balay /* do nondiagonal part */ 12689566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multtranspose)(a->B, xx, a->lvec)); 1269cee3aa6bSSatish Balay /* do local part */ 12709566063dSJacob Faibussowitsch PetscCall((*a->A->ops->multtransposeadd)(a->A, xx, yy, zz)); 1271e4a140f6SJunchao Zhang /* add partial results together */ 12729566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(a->Mvctx, a->lvec, zz, ADD_VALUES, SCATTER_REVERSE)); 12739566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(a->Mvctx, a->lvec, zz, ADD_VALUES, SCATTER_REVERSE)); 12743ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1275cee3aa6bSSatish Balay } 1276cee3aa6bSSatish Balay 1277cee3aa6bSSatish Balay /* 1278cee3aa6bSSatish Balay This only works correctly for square matrices where the subblock A->A is the 1279cee3aa6bSSatish Balay diagonal block 1280cee3aa6bSSatish Balay */ 128166976f2fSJacob Faibussowitsch static PetscErrorCode MatGetDiagonal_MPIBAIJ(Mat A, Vec v) 1282d71ae5a4SJacob Faibussowitsch { 1283d64ed03dSBarry Smith PetscFunctionBegin; 12845f80ce2aSJacob Faibussowitsch PetscCheck(A->rmap->N == A->cmap->N, PETSC_COMM_SELF, PETSC_ERR_SUP, "Supports only square matrix where A->A is diag block"); 12859566063dSJacob Faibussowitsch PetscCall(MatGetDiagonal(((Mat_MPIBAIJ *)A->data)->A, v)); 12863ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1287cee3aa6bSSatish Balay } 1288cee3aa6bSSatish Balay 128966976f2fSJacob Faibussowitsch static PetscErrorCode MatScale_MPIBAIJ(Mat A, PetscScalar aa) 1290d71ae5a4SJacob Faibussowitsch { 1291cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 1292d64ed03dSBarry Smith 1293d64ed03dSBarry Smith PetscFunctionBegin; 12949566063dSJacob Faibussowitsch PetscCall(MatScale(a->A, aa)); 12959566063dSJacob Faibussowitsch PetscCall(MatScale(a->B, aa)); 12963ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1297cee3aa6bSSatish Balay } 1298026e39d0SSatish Balay 1299523895eeSPierre Jolivet static PetscErrorCode MatGetRow_MPIBAIJ(Mat matin, PetscInt row, PetscInt *nz, PetscInt **idx, PetscScalar **v) 1300d71ae5a4SJacob Faibussowitsch { 1301acdf5bf4SSatish Balay Mat_MPIBAIJ *mat = (Mat_MPIBAIJ *)matin->data; 130287828ca2SBarry Smith PetscScalar *vworkA, *vworkB, **pvA, **pvB, *v_p; 1303d0f46423SBarry Smith PetscInt bs = matin->rmap->bs, bs2 = mat->bs2, i, *cworkA, *cworkB, **pcA, **pcB; 1304d0f46423SBarry Smith PetscInt nztot, nzA, nzB, lrow, brstart = matin->rmap->rstart, brend = matin->rmap->rend; 1305899cda47SBarry Smith PetscInt *cmap, *idx_p, cstart = mat->cstartbs; 1306acdf5bf4SSatish Balay 1307d64ed03dSBarry Smith PetscFunctionBegin; 13085f80ce2aSJacob Faibussowitsch PetscCheck(row >= brstart && row < brend, PETSC_COMM_SELF, PETSC_ERR_SUP, "Only local rows"); 13095f80ce2aSJacob Faibussowitsch PetscCheck(!mat->getrowactive, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Already active"); 1310acdf5bf4SSatish Balay mat->getrowactive = PETSC_TRUE; 1311acdf5bf4SSatish Balay 1312acdf5bf4SSatish Balay if (!mat->rowvalues && (idx || v)) { 1313acdf5bf4SSatish Balay /* 1314acdf5bf4SSatish Balay allocate enough space to hold information from the longest row. 1315acdf5bf4SSatish Balay */ 1316acdf5bf4SSatish Balay Mat_SeqBAIJ *Aa = (Mat_SeqBAIJ *)mat->A->data, *Ba = (Mat_SeqBAIJ *)mat->B->data; 1317b24ad042SBarry Smith PetscInt max = 1, mbs = mat->mbs, tmp; 1318bd16c2feSSatish Balay for (i = 0; i < mbs; i++) { 1319acdf5bf4SSatish Balay tmp = Aa->i[i + 1] - Aa->i[i] + Ba->i[i + 1] - Ba->i[i]; 132026fbe8dcSKarl Rupp if (max < tmp) max = tmp; 1321acdf5bf4SSatish Balay } 13229566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(max * bs2, &mat->rowvalues, max * bs2, &mat->rowindices)); 1323acdf5bf4SSatish Balay } 1324d9d09a02SSatish Balay lrow = row - brstart; 1325acdf5bf4SSatish Balay 13269371c9d4SSatish Balay pvA = &vworkA; 13279371c9d4SSatish Balay pcA = &cworkA; 13289371c9d4SSatish Balay pvB = &vworkB; 13299371c9d4SSatish Balay pcB = &cworkB; 13309371c9d4SSatish Balay if (!v) { 13319371c9d4SSatish Balay pvA = NULL; 13329371c9d4SSatish Balay pvB = NULL; 13339371c9d4SSatish Balay } 13349371c9d4SSatish Balay if (!idx) { 13359371c9d4SSatish Balay pcA = NULL; 13369371c9d4SSatish Balay if (!v) pcB = NULL; 13379371c9d4SSatish Balay } 13389566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->getrow)(mat->A, lrow, &nzA, pcA, pvA)); 13399566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->getrow)(mat->B, lrow, &nzB, pcB, pvB)); 1340acdf5bf4SSatish Balay nztot = nzA + nzB; 1341acdf5bf4SSatish Balay 1342acdf5bf4SSatish Balay cmap = mat->garray; 1343acdf5bf4SSatish Balay if (v || idx) { 1344acdf5bf4SSatish Balay if (nztot) { 1345acdf5bf4SSatish Balay /* Sort by increasing column numbers, assuming A and B already sorted */ 1346b24ad042SBarry Smith PetscInt imark = -1; 1347acdf5bf4SSatish Balay if (v) { 1348acdf5bf4SSatish Balay *v = v_p = mat->rowvalues; 1349acdf5bf4SSatish Balay for (i = 0; i < nzB; i++) { 1350d9d09a02SSatish Balay if (cmap[cworkB[i] / bs] < cstart) v_p[i] = vworkB[i]; 1351acdf5bf4SSatish Balay else break; 1352acdf5bf4SSatish Balay } 1353acdf5bf4SSatish Balay imark = i; 1354acdf5bf4SSatish Balay for (i = 0; i < nzA; i++) v_p[imark + i] = vworkA[i]; 1355acdf5bf4SSatish Balay for (i = imark; i < nzB; i++) v_p[nzA + i] = vworkB[i]; 1356acdf5bf4SSatish Balay } 1357acdf5bf4SSatish Balay if (idx) { 1358acdf5bf4SSatish Balay *idx = idx_p = mat->rowindices; 1359acdf5bf4SSatish Balay if (imark > -1) { 1360ad540459SPierre Jolivet for (i = 0; i < imark; i++) idx_p[i] = cmap[cworkB[i] / bs] * bs + cworkB[i] % bs; 1361acdf5bf4SSatish Balay } else { 1362acdf5bf4SSatish Balay for (i = 0; i < nzB; i++) { 136326fbe8dcSKarl Rupp if (cmap[cworkB[i] / bs] < cstart) idx_p[i] = cmap[cworkB[i] / bs] * bs + cworkB[i] % bs; 1364acdf5bf4SSatish Balay else break; 1365acdf5bf4SSatish Balay } 1366acdf5bf4SSatish Balay imark = i; 1367acdf5bf4SSatish Balay } 1368d9d09a02SSatish Balay for (i = 0; i < nzA; i++) idx_p[imark + i] = cstart * bs + cworkA[i]; 1369d9d09a02SSatish Balay for (i = imark; i < nzB; i++) idx_p[nzA + i] = cmap[cworkB[i] / bs] * bs + cworkB[i] % bs; 1370acdf5bf4SSatish Balay } 1371d64ed03dSBarry Smith } else { 1372f4259b30SLisandro Dalcin if (idx) *idx = NULL; 1373f4259b30SLisandro Dalcin if (v) *v = NULL; 1374d212a18eSSatish Balay } 1375acdf5bf4SSatish Balay } 1376acdf5bf4SSatish Balay *nz = nztot; 13779566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->restorerow)(mat->A, lrow, &nzA, pcA, pvA)); 13789566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->restorerow)(mat->B, lrow, &nzB, pcB, pvB)); 13793ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1380acdf5bf4SSatish Balay } 1381acdf5bf4SSatish Balay 1382523895eeSPierre Jolivet static PetscErrorCode MatRestoreRow_MPIBAIJ(Mat mat, PetscInt row, PetscInt *nz, PetscInt **idx, PetscScalar **v) 1383d71ae5a4SJacob Faibussowitsch { 1384acdf5bf4SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 1385d64ed03dSBarry Smith 1386d64ed03dSBarry Smith PetscFunctionBegin; 13875f80ce2aSJacob Faibussowitsch PetscCheck(baij->getrowactive, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "MatGetRow not called"); 1388acdf5bf4SSatish Balay baij->getrowactive = PETSC_FALSE; 13893ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1390acdf5bf4SSatish Balay } 1391acdf5bf4SSatish Balay 139266976f2fSJacob Faibussowitsch static PetscErrorCode MatZeroEntries_MPIBAIJ(Mat A) 1393d71ae5a4SJacob Faibussowitsch { 139458667388SSatish Balay Mat_MPIBAIJ *l = (Mat_MPIBAIJ *)A->data; 1395d64ed03dSBarry Smith 1396d64ed03dSBarry Smith PetscFunctionBegin; 13979566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(l->A)); 13989566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(l->B)); 13993ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 140058667388SSatish Balay } 14010ac07820SSatish Balay 140266976f2fSJacob Faibussowitsch static PetscErrorCode MatGetInfo_MPIBAIJ(Mat matin, MatInfoType flag, MatInfo *info) 1403d71ae5a4SJacob Faibussowitsch { 14044e220ebcSLois Curfman McInnes Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)matin->data; 14054e220ebcSLois Curfman McInnes Mat A = a->A, B = a->B; 14063966268fSBarry Smith PetscLogDouble isend[5], irecv[5]; 14070ac07820SSatish Balay 1408d64ed03dSBarry Smith PetscFunctionBegin; 1409d0f46423SBarry Smith info->block_size = (PetscReal)matin->rmap->bs; 141026fbe8dcSKarl Rupp 14119566063dSJacob Faibussowitsch PetscCall(MatGetInfo(A, MAT_LOCAL, info)); 141226fbe8dcSKarl Rupp 14139371c9d4SSatish Balay isend[0] = info->nz_used; 14149371c9d4SSatish Balay isend[1] = info->nz_allocated; 14159371c9d4SSatish Balay isend[2] = info->nz_unneeded; 14169371c9d4SSatish Balay isend[3] = info->memory; 14179371c9d4SSatish Balay isend[4] = info->mallocs; 141826fbe8dcSKarl Rupp 14199566063dSJacob Faibussowitsch PetscCall(MatGetInfo(B, MAT_LOCAL, info)); 142026fbe8dcSKarl Rupp 14219371c9d4SSatish Balay isend[0] += info->nz_used; 14229371c9d4SSatish Balay isend[1] += info->nz_allocated; 14239371c9d4SSatish Balay isend[2] += info->nz_unneeded; 14249371c9d4SSatish Balay isend[3] += info->memory; 14259371c9d4SSatish Balay isend[4] += info->mallocs; 142626fbe8dcSKarl Rupp 14270ac07820SSatish Balay if (flag == MAT_LOCAL) { 14284e220ebcSLois Curfman McInnes info->nz_used = isend[0]; 14294e220ebcSLois Curfman McInnes info->nz_allocated = isend[1]; 14304e220ebcSLois Curfman McInnes info->nz_unneeded = isend[2]; 14314e220ebcSLois Curfman McInnes info->memory = isend[3]; 14324e220ebcSLois Curfman McInnes info->mallocs = isend[4]; 14330ac07820SSatish Balay } else if (flag == MAT_GLOBAL_MAX) { 1434462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(isend, irecv, 5, MPIU_PETSCLOGDOUBLE, MPI_MAX, PetscObjectComm((PetscObject)matin))); 143526fbe8dcSKarl Rupp 14364e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 14374e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 14384e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 14394e220ebcSLois Curfman McInnes info->memory = irecv[3]; 14404e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 14410ac07820SSatish Balay } else if (flag == MAT_GLOBAL_SUM) { 1442462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(isend, irecv, 5, MPIU_PETSCLOGDOUBLE, MPI_SUM, PetscObjectComm((PetscObject)matin))); 144326fbe8dcSKarl Rupp 14444e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 14454e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 14464e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 14474e220ebcSLois Curfman McInnes info->memory = irecv[3]; 14484e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 144998921bdaSJacob Faibussowitsch } else SETERRQ(PetscObjectComm((PetscObject)matin), PETSC_ERR_ARG_WRONG, "Unknown MatInfoType argument %d", (int)flag); 14504e220ebcSLois Curfman McInnes info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */ 14514e220ebcSLois Curfman McInnes info->fill_ratio_needed = 0; 14524e220ebcSLois Curfman McInnes info->factor_mallocs = 0; 14533ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 14540ac07820SSatish Balay } 14550ac07820SSatish Balay 145666976f2fSJacob Faibussowitsch static PetscErrorCode MatSetOption_MPIBAIJ(Mat A, MatOption op, PetscBool flg) 1457d71ae5a4SJacob Faibussowitsch { 145858667388SSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 145958667388SSatish Balay 1460d64ed03dSBarry Smith PetscFunctionBegin; 146112c028f9SKris Buschelman switch (op) { 1462512a5fc5SBarry Smith case MAT_NEW_NONZERO_LOCATIONS: 146312c028f9SKris Buschelman case MAT_NEW_NONZERO_ALLOCATION_ERR: 146428b2fa4aSMatthew Knepley case MAT_UNUSED_NONZERO_LOCATION_ERR: 1465a9817697SBarry Smith case MAT_KEEP_NONZERO_PATTERN: 146612c028f9SKris Buschelman case MAT_NEW_NONZERO_LOCATION_ERR: 146743674050SBarry Smith MatCheckPreallocated(A, 1); 14689566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->A, op, flg)); 14699566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->B, op, flg)); 147012c028f9SKris Buschelman break; 147112c028f9SKris Buschelman case MAT_ROW_ORIENTED: 147243674050SBarry Smith MatCheckPreallocated(A, 1); 14734e0d8c25SBarry Smith a->roworiented = flg; 147426fbe8dcSKarl Rupp 14759566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->A, op, flg)); 14769566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->B, op, flg)); 147712c028f9SKris Buschelman break; 1478d71ae5a4SJacob Faibussowitsch case MAT_IGNORE_OFF_PROC_ENTRIES: 1479d71ae5a4SJacob Faibussowitsch a->donotstash = flg; 1480d71ae5a4SJacob Faibussowitsch break; 148112c028f9SKris Buschelman case MAT_USE_HASH_TABLE: 14824e0d8c25SBarry Smith a->ht_flag = flg; 1483abf3b562SBarry Smith a->ht_fact = 1.39; 148412c028f9SKris Buschelman break; 148577e54ba9SKris Buschelman case MAT_SYMMETRIC: 148677e54ba9SKris Buschelman case MAT_STRUCTURALLY_SYMMETRIC: 14872188ac68SBarry Smith case MAT_HERMITIAN: 14882188ac68SBarry Smith case MAT_SYMMETRY_ETERNAL: 1489b94d7dedSBarry Smith case MAT_STRUCTURAL_SYMMETRY_ETERNAL: 1490b94d7dedSBarry Smith case MAT_SPD_ETERNAL: 1491b94d7dedSBarry Smith /* if the diagonal matrix is square it inherits some of the properties above */ 14929725ddffSPierre Jolivet if (a->A && A->rmap->n == A->cmap->n) PetscCall(MatSetOption(a->A, op, flg)); 149377e54ba9SKris Buschelman break; 1494d71ae5a4SJacob Faibussowitsch default: 1495888c827cSStefano Zampini break; 1496d64ed03dSBarry Smith } 14973ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 149858667388SSatish Balay } 149958667388SSatish Balay 150066976f2fSJacob Faibussowitsch static PetscErrorCode MatTranspose_MPIBAIJ(Mat A, MatReuse reuse, Mat *matout) 1501d71ae5a4SJacob Faibussowitsch { 15020ac07820SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)A->data; 15030ac07820SSatish Balay Mat_SeqBAIJ *Aloc; 15040ac07820SSatish Balay Mat B; 1505d0f46423SBarry Smith PetscInt M = A->rmap->N, N = A->cmap->N, *ai, *aj, i, *rvals, j, k, col; 1506d0f46423SBarry Smith PetscInt bs = A->rmap->bs, mbs = baij->mbs; 15073eda8832SBarry Smith MatScalar *a; 15080ac07820SSatish Balay 1509d64ed03dSBarry Smith PetscFunctionBegin; 15107fb60732SBarry Smith if (reuse == MAT_REUSE_MATRIX) PetscCall(MatTransposeCheckNonzeroState_Private(A, *matout)); 1511cf37664fSBarry Smith if (reuse == MAT_INITIAL_MATRIX || reuse == MAT_INPLACE_MATRIX) { 15129566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)A), &B)); 15139566063dSJacob Faibussowitsch PetscCall(MatSetSizes(B, A->cmap->n, A->rmap->n, N, M)); 15149566063dSJacob Faibussowitsch PetscCall(MatSetType(B, ((PetscObject)A)->type_name)); 15152e72b8d9SBarry Smith /* Do not know preallocation information, but must set block size */ 15169566063dSJacob Faibussowitsch PetscCall(MatMPIBAIJSetPreallocation(B, A->rmap->bs, PETSC_DECIDE, NULL, PETSC_DECIDE, NULL)); 1517fc4dec0aSBarry Smith } else { 1518fc4dec0aSBarry Smith B = *matout; 1519fc4dec0aSBarry Smith } 15200ac07820SSatish Balay 15210ac07820SSatish Balay /* copy over the A part */ 15220ac07820SSatish Balay Aloc = (Mat_SeqBAIJ *)baij->A->data; 15239371c9d4SSatish Balay ai = Aloc->i; 15249371c9d4SSatish Balay aj = Aloc->j; 15259371c9d4SSatish Balay a = Aloc->a; 15269566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(bs, &rvals)); 15270ac07820SSatish Balay 15280ac07820SSatish Balay for (i = 0; i < mbs; i++) { 1529899cda47SBarry Smith rvals[0] = bs * (baij->rstartbs + i); 153026fbe8dcSKarl Rupp for (j = 1; j < bs; j++) rvals[j] = rvals[j - 1] + 1; 15310ac07820SSatish Balay for (j = ai[i]; j < ai[i + 1]; j++) { 1532899cda47SBarry Smith col = (baij->cstartbs + aj[j]) * bs; 15330ac07820SSatish Balay for (k = 0; k < bs; k++) { 15349566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPIBAIJ(B, 1, &col, bs, rvals, a, INSERT_VALUES)); 153526fbe8dcSKarl Rupp 15369371c9d4SSatish Balay col++; 15379371c9d4SSatish Balay a += bs; 15380ac07820SSatish Balay } 15390ac07820SSatish Balay } 15400ac07820SSatish Balay } 15410ac07820SSatish Balay /* copy over the B part */ 15420ac07820SSatish Balay Aloc = (Mat_SeqBAIJ *)baij->B->data; 15439371c9d4SSatish Balay ai = Aloc->i; 15449371c9d4SSatish Balay aj = Aloc->j; 15459371c9d4SSatish Balay a = Aloc->a; 15460ac07820SSatish Balay for (i = 0; i < mbs; i++) { 1547899cda47SBarry Smith rvals[0] = bs * (baij->rstartbs + i); 154826fbe8dcSKarl Rupp for (j = 1; j < bs; j++) rvals[j] = rvals[j - 1] + 1; 15490ac07820SSatish Balay for (j = ai[i]; j < ai[i + 1]; j++) { 15500ac07820SSatish Balay col = baij->garray[aj[j]] * bs; 15510ac07820SSatish Balay for (k = 0; k < bs; k++) { 15529566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPIBAIJ(B, 1, &col, bs, rvals, a, INSERT_VALUES)); 155326fbe8dcSKarl Rupp col++; 155426fbe8dcSKarl Rupp a += bs; 15550ac07820SSatish Balay } 15560ac07820SSatish Balay } 15570ac07820SSatish Balay } 15589566063dSJacob Faibussowitsch PetscCall(PetscFree(rvals)); 15599566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY)); 15609566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY)); 15610ac07820SSatish Balay 1562cf37664fSBarry Smith if (reuse == MAT_INITIAL_MATRIX || reuse == MAT_REUSE_MATRIX) *matout = B; 156348a46eb9SPierre Jolivet else PetscCall(MatHeaderMerge(A, &B)); 15643ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 15650ac07820SSatish Balay } 15660e95ebc0SSatish Balay 156766976f2fSJacob Faibussowitsch static PetscErrorCode MatDiagonalScale_MPIBAIJ(Mat mat, Vec ll, Vec rr) 1568d71ae5a4SJacob Faibussowitsch { 156936c4a09eSSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 157036c4a09eSSatish Balay Mat a = baij->A, b = baij->B; 1571b24ad042SBarry Smith PetscInt s1, s2, s3; 15720e95ebc0SSatish Balay 1573d64ed03dSBarry Smith PetscFunctionBegin; 15749566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(mat, &s2, &s3)); 157536c4a09eSSatish Balay if (rr) { 15769566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(rr, &s1)); 15775f80ce2aSJacob Faibussowitsch PetscCheck(s1 == s3, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "right vector non-conforming local size"); 157836c4a09eSSatish Balay /* Overlap communication with computation. */ 15799566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(baij->Mvctx, rr, baij->lvec, INSERT_VALUES, SCATTER_FORWARD)); 158036c4a09eSSatish Balay } 15810e95ebc0SSatish Balay if (ll) { 15829566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(ll, &s1)); 15835f80ce2aSJacob Faibussowitsch PetscCheck(s1 == s2, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "left vector non-conforming local size"); 1584dbbe0bcdSBarry Smith PetscUseTypeMethod(b, diagonalscale, ll, NULL); 15850e95ebc0SSatish Balay } 158636c4a09eSSatish Balay /* scale the diagonal block */ 1587dbbe0bcdSBarry Smith PetscUseTypeMethod(a, diagonalscale, ll, rr); 158836c4a09eSSatish Balay 158936c4a09eSSatish Balay if (rr) { 159036c4a09eSSatish Balay /* Do a scatter end and then right scale the off-diagonal block */ 15919566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(baij->Mvctx, rr, baij->lvec, INSERT_VALUES, SCATTER_FORWARD)); 1592dbbe0bcdSBarry Smith PetscUseTypeMethod(b, diagonalscale, NULL, baij->lvec); 159336c4a09eSSatish Balay } 15943ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 15950e95ebc0SSatish Balay } 15960e95ebc0SSatish Balay 159766976f2fSJacob Faibussowitsch static PetscErrorCode MatZeroRows_MPIBAIJ(Mat A, PetscInt N, const PetscInt rows[], PetscScalar diag, Vec x, Vec b) 1598d71ae5a4SJacob Faibussowitsch { 15990ac07820SSatish Balay Mat_MPIBAIJ *l = (Mat_MPIBAIJ *)A->data; 160065a92638SMatthew G. Knepley PetscInt *lrows; 16016e520ac8SStefano Zampini PetscInt r, len; 160294342113SStefano Zampini PetscBool cong; 16030ac07820SSatish Balay 1604d64ed03dSBarry Smith PetscFunctionBegin; 16056e520ac8SStefano Zampini /* get locally owned rows */ 16069566063dSJacob Faibussowitsch PetscCall(MatZeroRowsMapLocal_Private(A, N, rows, &len, &lrows)); 1607dd8e379bSPierre Jolivet /* fix right-hand side if needed */ 160897b48c8fSBarry Smith if (x && b) { 160965a92638SMatthew G. Knepley const PetscScalar *xx; 161065a92638SMatthew G. Knepley PetscScalar *bb; 161165a92638SMatthew G. Knepley 16129566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(x, &xx)); 16139566063dSJacob Faibussowitsch PetscCall(VecGetArray(b, &bb)); 161465a92638SMatthew G. Knepley for (r = 0; r < len; ++r) bb[lrows[r]] = diag * xx[lrows[r]]; 16159566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(x, &xx)); 16169566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(b, &bb)); 161797b48c8fSBarry Smith } 161897b48c8fSBarry Smith 16190ac07820SSatish Balay /* actually zap the local rows */ 162072dacd9aSBarry Smith /* 162172dacd9aSBarry Smith Zero the required rows. If the "diagonal block" of the matrix 1622a8c7a070SBarry Smith is square and the user wishes to set the diagonal we use separate 162372dacd9aSBarry Smith code so that MatSetValues() is not called for each diagonal allocating 162472dacd9aSBarry Smith new memory, thus calling lots of mallocs and slowing things down. 162572dacd9aSBarry Smith 162672dacd9aSBarry Smith */ 16279c957beeSSatish Balay /* must zero l->B before l->A because the (diag) case below may put values into l->B*/ 16289566063dSJacob Faibussowitsch PetscCall(MatZeroRows_SeqBAIJ(l->B, len, lrows, 0.0, NULL, NULL)); 16299566063dSJacob Faibussowitsch PetscCall(MatHasCongruentLayouts(A, &cong)); 163094342113SStefano Zampini if ((diag != 0.0) && cong) { 16319566063dSJacob Faibussowitsch PetscCall(MatZeroRows_SeqBAIJ(l->A, len, lrows, diag, NULL, NULL)); 1632f4df32b1SMatthew Knepley } else if (diag != 0.0) { 16339566063dSJacob Faibussowitsch PetscCall(MatZeroRows_SeqBAIJ(l->A, len, lrows, 0.0, NULL, NULL)); 163400045ab3SPierre Jolivet PetscCheck(!((Mat_SeqBAIJ *)l->A->data)->nonew, PETSC_COMM_SELF, PETSC_ERR_SUP, "MatZeroRows() on rectangular matrices cannot be used with the Mat options MAT_NEW_NONZERO_LOCATIONS, MAT_NEW_NONZERO_LOCATION_ERR, and MAT_NEW_NONZERO_ALLOCATION_ERR"); 163565a92638SMatthew G. Knepley for (r = 0; r < len; ++r) { 163665a92638SMatthew G. Knepley const PetscInt row = lrows[r] + A->rmap->rstart; 16379566063dSJacob Faibussowitsch PetscCall(MatSetValues(A, 1, &row, 1, &row, &diag, INSERT_VALUES)); 1638a07cd24cSSatish Balay } 16399566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(A, MAT_FINAL_ASSEMBLY)); 16409566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(A, MAT_FINAL_ASSEMBLY)); 16419c957beeSSatish Balay } else { 16429566063dSJacob Faibussowitsch PetscCall(MatZeroRows_SeqBAIJ(l->A, len, lrows, 0.0, NULL, NULL)); 1643a07cd24cSSatish Balay } 16449566063dSJacob Faibussowitsch PetscCall(PetscFree(lrows)); 16454f9cfa9eSBarry Smith 16464f9cfa9eSBarry Smith /* only change matrix nonzero state if pattern was allowed to be changed */ 1647f4f49eeaSPierre Jolivet if (!((Mat_SeqBAIJ *)l->A->data)->keepnonzeropattern || !((Mat_SeqBAIJ *)l->A->data)->nonew) { 1648e56f5c9eSBarry Smith PetscObjectState state = l->A->nonzerostate + l->B->nonzerostate; 1649462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&state, &A->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)A))); 1650e56f5c9eSBarry Smith } 16513ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 16520ac07820SSatish Balay } 165372dacd9aSBarry Smith 165466976f2fSJacob Faibussowitsch static PetscErrorCode MatZeroRowsColumns_MPIBAIJ(Mat A, PetscInt N, const PetscInt rows[], PetscScalar diag, Vec x, Vec b) 1655d71ae5a4SJacob Faibussowitsch { 16566f0a72daSMatthew G. Knepley Mat_MPIBAIJ *l = (Mat_MPIBAIJ *)A->data; 16576497c311SBarry Smith PetscMPIInt n, p = 0; 1658131c27b5Sprj- PetscInt i, j, k, r, len = 0, row, col, count; 16596f0a72daSMatthew G. Knepley PetscInt *lrows, *owners = A->rmap->range; 16606f0a72daSMatthew G. Knepley PetscSFNode *rrows; 16616f0a72daSMatthew G. Knepley PetscSF sf; 16626f0a72daSMatthew G. Knepley const PetscScalar *xx; 16636f0a72daSMatthew G. Knepley PetscScalar *bb, *mask; 16646f0a72daSMatthew G. Knepley Vec xmask, lmask; 16656f0a72daSMatthew G. Knepley Mat_SeqBAIJ *baij = (Mat_SeqBAIJ *)l->B->data; 16666f0a72daSMatthew G. Knepley PetscInt bs = A->rmap->bs, bs2 = baij->bs2; 16676f0a72daSMatthew G. Knepley PetscScalar *aa; 16686f0a72daSMatthew G. Knepley 16696f0a72daSMatthew G. Knepley PetscFunctionBegin; 16706497c311SBarry Smith PetscCall(PetscMPIIntCast(A->rmap->n, &n)); 16716f0a72daSMatthew G. Knepley /* Create SF where leaves are input rows and roots are owned rows */ 16729566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(n, &lrows)); 16736f0a72daSMatthew G. Knepley for (r = 0; r < n; ++r) lrows[r] = -1; 16749566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(N, &rrows)); 16756f0a72daSMatthew G. Knepley for (r = 0; r < N; ++r) { 16766f0a72daSMatthew G. Knepley const PetscInt idx = rows[r]; 16775f80ce2aSJacob Faibussowitsch PetscCheck(idx >= 0 && A->rmap->N > idx, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row %" PetscInt_FMT " out of range [0,%" PetscInt_FMT ")", idx, A->rmap->N); 16785ba17502SJed Brown if (idx < owners[p] || owners[p + 1] <= idx) { /* short-circuit the search if the last p owns this row too */ 16799566063dSJacob Faibussowitsch PetscCall(PetscLayoutFindOwner(A->rmap, idx, &p)); 16805ba17502SJed Brown } 16816f0a72daSMatthew G. Knepley rrows[r].rank = p; 16826f0a72daSMatthew G. Knepley rrows[r].index = rows[r] - owners[p]; 16836f0a72daSMatthew G. Knepley } 16849566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)A), &sf)); 16859566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(sf, n, N, NULL, PETSC_OWN_POINTER, rrows, PETSC_OWN_POINTER)); 16866f0a72daSMatthew G. Knepley /* Collect flags for rows to be zeroed */ 16879566063dSJacob Faibussowitsch PetscCall(PetscSFReduceBegin(sf, MPIU_INT, (PetscInt *)rows, lrows, MPI_LOR)); 16889566063dSJacob Faibussowitsch PetscCall(PetscSFReduceEnd(sf, MPIU_INT, (PetscInt *)rows, lrows, MPI_LOR)); 16899566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&sf)); 16906f0a72daSMatthew G. Knepley /* Compress and put in row numbers */ 16919371c9d4SSatish Balay for (r = 0; r < n; ++r) 16929371c9d4SSatish Balay if (lrows[r] >= 0) lrows[len++] = r; 16936f0a72daSMatthew G. Knepley /* zero diagonal part of matrix */ 16949566063dSJacob Faibussowitsch PetscCall(MatZeroRowsColumns(l->A, len, lrows, diag, x, b)); 16954cf0e950SBarry Smith /* handle off-diagonal part of matrix */ 16969566063dSJacob Faibussowitsch PetscCall(MatCreateVecs(A, &xmask, NULL)); 16979566063dSJacob Faibussowitsch PetscCall(VecDuplicate(l->lvec, &lmask)); 16989566063dSJacob Faibussowitsch PetscCall(VecGetArray(xmask, &bb)); 16996f0a72daSMatthew G. Knepley for (i = 0; i < len; i++) bb[lrows[i]] = 1; 17009566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(xmask, &bb)); 17019566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(l->Mvctx, xmask, lmask, ADD_VALUES, SCATTER_FORWARD)); 17029566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(l->Mvctx, xmask, lmask, ADD_VALUES, SCATTER_FORWARD)); 17039566063dSJacob Faibussowitsch PetscCall(VecDestroy(&xmask)); 17046f0a72daSMatthew G. Knepley if (x) { 17059566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(l->Mvctx, x, l->lvec, INSERT_VALUES, SCATTER_FORWARD)); 17069566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(l->Mvctx, x, l->lvec, INSERT_VALUES, SCATTER_FORWARD)); 17079566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(l->lvec, &xx)); 17089566063dSJacob Faibussowitsch PetscCall(VecGetArray(b, &bb)); 17096f0a72daSMatthew G. Knepley } 17109566063dSJacob Faibussowitsch PetscCall(VecGetArray(lmask, &mask)); 17114cf0e950SBarry Smith /* remove zeroed rows of off-diagonal matrix */ 17126f0a72daSMatthew G. Knepley for (i = 0; i < len; ++i) { 17136f0a72daSMatthew G. Knepley row = lrows[i]; 17146f0a72daSMatthew G. Knepley count = (baij->i[row / bs + 1] - baij->i[row / bs]) * bs; 1715835f2295SStefano Zampini aa = baij->a + baij->i[row / bs] * bs2 + (row % bs); 17166f0a72daSMatthew G. Knepley for (k = 0; k < count; ++k) { 17176f0a72daSMatthew G. Knepley aa[0] = 0.0; 17186f0a72daSMatthew G. Knepley aa += bs; 17196f0a72daSMatthew G. Knepley } 17206f0a72daSMatthew G. Knepley } 17216f0a72daSMatthew G. Knepley /* loop over all elements of off process part of matrix zeroing removed columns*/ 17226f0a72daSMatthew G. Knepley for (i = 0; i < l->B->rmap->N; ++i) { 17236f0a72daSMatthew G. Knepley row = i / bs; 17246f0a72daSMatthew G. Knepley for (j = baij->i[row]; j < baij->i[row + 1]; ++j) { 17256f0a72daSMatthew G. Knepley for (k = 0; k < bs; ++k) { 17266f0a72daSMatthew G. Knepley col = bs * baij->j[j] + k; 17276f0a72daSMatthew G. Knepley if (PetscAbsScalar(mask[col])) { 1728835f2295SStefano Zampini aa = baij->a + j * bs2 + (i % bs) + bs * k; 172989ae1891SBarry Smith if (x) bb[i] -= aa[0] * xx[col]; 17306f0a72daSMatthew G. Knepley aa[0] = 0.0; 17316f0a72daSMatthew G. Knepley } 17326f0a72daSMatthew G. Knepley } 17336f0a72daSMatthew G. Knepley } 17346f0a72daSMatthew G. Knepley } 17356f0a72daSMatthew G. Knepley if (x) { 17369566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(b, &bb)); 17379566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(l->lvec, &xx)); 17386f0a72daSMatthew G. Knepley } 17399566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(lmask, &mask)); 17409566063dSJacob Faibussowitsch PetscCall(VecDestroy(&lmask)); 17419566063dSJacob Faibussowitsch PetscCall(PetscFree(lrows)); 17424f9cfa9eSBarry Smith 17434f9cfa9eSBarry Smith /* only change matrix nonzero state if pattern was allowed to be changed */ 1744f4f49eeaSPierre Jolivet if (!((Mat_SeqBAIJ *)l->A->data)->nonew) { 17454f9cfa9eSBarry Smith PetscObjectState state = l->A->nonzerostate + l->B->nonzerostate; 1746462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&state, &A->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)A))); 17474f9cfa9eSBarry Smith } 17483ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 17496f0a72daSMatthew G. Knepley } 17506f0a72daSMatthew G. Knepley 175166976f2fSJacob Faibussowitsch static PetscErrorCode MatSetUnfactored_MPIBAIJ(Mat A) 1752d71ae5a4SJacob Faibussowitsch { 1753bb5a7306SBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 1754d64ed03dSBarry Smith 1755d64ed03dSBarry Smith PetscFunctionBegin; 17569566063dSJacob Faibussowitsch PetscCall(MatSetUnfactored(a->A)); 17573ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1758bb5a7306SBarry Smith } 1759bb5a7306SBarry Smith 17606849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIBAIJ(Mat, MatDuplicateOption, Mat *); 17610ac07820SSatish Balay 176266976f2fSJacob Faibussowitsch static PetscErrorCode MatEqual_MPIBAIJ(Mat A, Mat B, PetscBool *flag) 1763d71ae5a4SJacob Faibussowitsch { 17647fc3c18eSBarry Smith Mat_MPIBAIJ *matB = (Mat_MPIBAIJ *)B->data, *matA = (Mat_MPIBAIJ *)A->data; 17657fc3c18eSBarry Smith Mat a, b, c, d; 1766ace3abfcSBarry Smith PetscBool flg; 17677fc3c18eSBarry Smith 17687fc3c18eSBarry Smith PetscFunctionBegin; 17699371c9d4SSatish Balay a = matA->A; 17709371c9d4SSatish Balay b = matA->B; 17719371c9d4SSatish Balay c = matB->A; 17729371c9d4SSatish Balay d = matB->B; 17737fc3c18eSBarry Smith 17749566063dSJacob Faibussowitsch PetscCall(MatEqual(a, c, &flg)); 177548a46eb9SPierre Jolivet if (flg) PetscCall(MatEqual(b, d, &flg)); 17765440e5dcSBarry Smith PetscCallMPI(MPIU_Allreduce(&flg, flag, 1, MPI_C_BOOL, MPI_LAND, PetscObjectComm((PetscObject)A))); 17773ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 17787fc3c18eSBarry Smith } 17797fc3c18eSBarry Smith 178066976f2fSJacob Faibussowitsch static PetscErrorCode MatCopy_MPIBAIJ(Mat A, Mat B, MatStructure str) 1781d71ae5a4SJacob Faibussowitsch { 17823c896bc6SHong Zhang Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 17833c896bc6SHong Zhang Mat_MPIBAIJ *b = (Mat_MPIBAIJ *)B->data; 17843c896bc6SHong Zhang 17853c896bc6SHong Zhang PetscFunctionBegin; 17863c896bc6SHong Zhang /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */ 17873c896bc6SHong Zhang if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) { 17889566063dSJacob Faibussowitsch PetscCall(MatCopy_Basic(A, B, str)); 17893c896bc6SHong Zhang } else { 17909566063dSJacob Faibussowitsch PetscCall(MatCopy(a->A, b->A, str)); 17919566063dSJacob Faibussowitsch PetscCall(MatCopy(a->B, b->B, str)); 17923c896bc6SHong Zhang } 17939566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)B)); 17943ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 17953c896bc6SHong Zhang } 1796273d9f13SBarry Smith 1797d71ae5a4SJacob Faibussowitsch PetscErrorCode MatAXPYGetPreallocation_MPIBAIJ(Mat Y, const PetscInt *yltog, Mat X, const PetscInt *xltog, PetscInt *nnz) 1798d71ae5a4SJacob Faibussowitsch { 1799001ddc4fSHong Zhang PetscInt bs = Y->rmap->bs, m = Y->rmap->N / bs; 18004de5dceeSHong Zhang Mat_SeqBAIJ *x = (Mat_SeqBAIJ *)X->data; 18014de5dceeSHong Zhang Mat_SeqBAIJ *y = (Mat_SeqBAIJ *)Y->data; 18024de5dceeSHong Zhang 18034de5dceeSHong Zhang PetscFunctionBegin; 18049566063dSJacob Faibussowitsch PetscCall(MatAXPYGetPreallocation_MPIX_private(m, x->i, x->j, xltog, y->i, y->j, yltog, nnz)); 18053ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 18064de5dceeSHong Zhang } 18074de5dceeSHong Zhang 180866976f2fSJacob Faibussowitsch static PetscErrorCode MatAXPY_MPIBAIJ(Mat Y, PetscScalar a, Mat X, MatStructure str) 1809d71ae5a4SJacob Faibussowitsch { 18104fe895cdSHong Zhang Mat_MPIBAIJ *xx = (Mat_MPIBAIJ *)X->data, *yy = (Mat_MPIBAIJ *)Y->data; 18114fe895cdSHong Zhang PetscBLASInt bnz, one = 1; 18124fe895cdSHong Zhang Mat_SeqBAIJ *x, *y; 1813b31f67cfSBarry Smith PetscInt bs2 = Y->rmap->bs * Y->rmap->bs; 18144fe895cdSHong Zhang 18154fe895cdSHong Zhang PetscFunctionBegin; 18164fe895cdSHong Zhang if (str == SAME_NONZERO_PATTERN) { 18174fe895cdSHong Zhang PetscScalar alpha = a; 18184fe895cdSHong Zhang x = (Mat_SeqBAIJ *)xx->A->data; 18194fe895cdSHong Zhang y = (Mat_SeqBAIJ *)yy->A->data; 18209566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(x->nz * bs2, &bnz)); 1821792fecdfSBarry Smith PetscCallBLAS("BLASaxpy", BLASaxpy_(&bnz, &alpha, x->a, &one, y->a, &one)); 18224fe895cdSHong Zhang x = (Mat_SeqBAIJ *)xx->B->data; 18234fe895cdSHong Zhang y = (Mat_SeqBAIJ *)yy->B->data; 18249566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(x->nz * bs2, &bnz)); 1825792fecdfSBarry Smith PetscCallBLAS("BLASaxpy", BLASaxpy_(&bnz, &alpha, x->a, &one, y->a, &one)); 18269566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)Y)); 1827ab784542SHong Zhang } else if (str == SUBSET_NONZERO_PATTERN) { /* nonzeros of X is a subset of Y's */ 18289566063dSJacob Faibussowitsch PetscCall(MatAXPY_Basic(Y, a, X, str)); 18294fe895cdSHong Zhang } else { 18304de5dceeSHong Zhang Mat B; 18314de5dceeSHong Zhang PetscInt *nnz_d, *nnz_o, bs = Y->rmap->bs; 18329566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(yy->A->rmap->N, &nnz_d)); 18339566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(yy->B->rmap->N, &nnz_o)); 18349566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)Y), &B)); 18359566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)B, ((PetscObject)Y)->name)); 18369566063dSJacob Faibussowitsch PetscCall(MatSetSizes(B, Y->rmap->n, Y->cmap->n, Y->rmap->N, Y->cmap->N)); 18379566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizesFromMats(B, Y, Y)); 18389566063dSJacob Faibussowitsch PetscCall(MatSetType(B, MATMPIBAIJ)); 18399566063dSJacob Faibussowitsch PetscCall(MatAXPYGetPreallocation_SeqBAIJ(yy->A, xx->A, nnz_d)); 18409566063dSJacob Faibussowitsch PetscCall(MatAXPYGetPreallocation_MPIBAIJ(yy->B, yy->garray, xx->B, xx->garray, nnz_o)); 18419566063dSJacob Faibussowitsch PetscCall(MatMPIBAIJSetPreallocation(B, bs, 0, nnz_d, 0, nnz_o)); 18424de5dceeSHong Zhang /* MatAXPY_BasicWithPreallocation() for BAIJ matrix is much slower than AIJ, even for bs=1 ! */ 18439566063dSJacob Faibussowitsch PetscCall(MatAXPY_BasicWithPreallocation(B, Y, a, X, str)); 18449566063dSJacob Faibussowitsch PetscCall(MatHeaderMerge(Y, &B)); 18459566063dSJacob Faibussowitsch PetscCall(PetscFree(nnz_d)); 18469566063dSJacob Faibussowitsch PetscCall(PetscFree(nnz_o)); 18474fe895cdSHong Zhang } 18483ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 18494fe895cdSHong Zhang } 18504fe895cdSHong Zhang 185166976f2fSJacob Faibussowitsch static PetscErrorCode MatConjugate_MPIBAIJ(Mat mat) 1852d71ae5a4SJacob Faibussowitsch { 18535f80ce2aSJacob Faibussowitsch PetscFunctionBegin; 18545f80ce2aSJacob Faibussowitsch if (PetscDefined(USE_COMPLEX)) { 18552726fb6dSPierre Jolivet Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)mat->data; 18562726fb6dSPierre Jolivet 18579566063dSJacob Faibussowitsch PetscCall(MatConjugate_SeqBAIJ(a->A)); 18589566063dSJacob Faibussowitsch PetscCall(MatConjugate_SeqBAIJ(a->B)); 18595f80ce2aSJacob Faibussowitsch } 18603ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 18612726fb6dSPierre Jolivet } 18622726fb6dSPierre Jolivet 186366976f2fSJacob Faibussowitsch static PetscErrorCode MatRealPart_MPIBAIJ(Mat A) 1864d71ae5a4SJacob Faibussowitsch { 186599cafbc1SBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 186699cafbc1SBarry Smith 186799cafbc1SBarry Smith PetscFunctionBegin; 18689566063dSJacob Faibussowitsch PetscCall(MatRealPart(a->A)); 18699566063dSJacob Faibussowitsch PetscCall(MatRealPart(a->B)); 18703ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 187199cafbc1SBarry Smith } 187299cafbc1SBarry Smith 187366976f2fSJacob Faibussowitsch static PetscErrorCode MatImaginaryPart_MPIBAIJ(Mat A) 1874d71ae5a4SJacob Faibussowitsch { 187599cafbc1SBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 187699cafbc1SBarry Smith 187799cafbc1SBarry Smith PetscFunctionBegin; 18789566063dSJacob Faibussowitsch PetscCall(MatImaginaryPart(a->A)); 18799566063dSJacob Faibussowitsch PetscCall(MatImaginaryPart(a->B)); 18803ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 188199cafbc1SBarry Smith } 188299cafbc1SBarry Smith 188366976f2fSJacob Faibussowitsch static PetscErrorCode MatCreateSubMatrix_MPIBAIJ(Mat mat, IS isrow, IS iscol, MatReuse call, Mat *newmat) 1884d71ae5a4SJacob Faibussowitsch { 18854aa3045dSJed Brown IS iscol_local; 18864aa3045dSJed Brown PetscInt csize; 18874aa3045dSJed Brown 18884aa3045dSJed Brown PetscFunctionBegin; 18899566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol, &csize)); 1890b79d0421SJed Brown if (call == MAT_REUSE_MATRIX) { 18919566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*newmat, "ISAllGather", (PetscObject *)&iscol_local)); 18925f80ce2aSJacob Faibussowitsch PetscCheck(iscol_local, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Submatrix passed in was not used before, cannot reuse"); 1893b79d0421SJed Brown } else { 18949566063dSJacob Faibussowitsch PetscCall(ISAllGather(iscol, &iscol_local)); 1895b79d0421SJed Brown } 1896fdfbdca6SPierre Jolivet PetscCall(MatCreateSubMatrix_MPIBAIJ_Private(mat, isrow, iscol_local, csize, call, newmat, PETSC_FALSE)); 1897b79d0421SJed Brown if (call == MAT_INITIAL_MATRIX) { 18989566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)*newmat, "ISAllGather", (PetscObject)iscol_local)); 18999566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscol_local)); 1900b79d0421SJed Brown } 19013ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 19024aa3045dSJed Brown } 190317df9f7cSHong Zhang 190482094794SBarry Smith /* 190582094794SBarry Smith Not great since it makes two copies of the submatrix, first an SeqBAIJ 190682094794SBarry Smith in local and then by concatenating the local matrices the end result. 19077dae84e0SHong Zhang Writing it directly would be much like MatCreateSubMatrices_MPIBAIJ(). 19088f46ffcaSHong Zhang This routine is used for BAIJ and SBAIJ matrices (unfortunate dependency). 190982094794SBarry Smith */ 1910fdfbdca6SPierre Jolivet PetscErrorCode MatCreateSubMatrix_MPIBAIJ_Private(Mat mat, IS isrow, IS iscol, PetscInt csize, MatReuse call, Mat *newmat, PetscBool sym) 1911d71ae5a4SJacob Faibussowitsch { 191282094794SBarry Smith PetscMPIInt rank, size; 191382094794SBarry Smith PetscInt i, m, n, rstart, row, rend, nz, *cwork, j, bs; 1914c9ffca76SHong Zhang PetscInt *ii, *jj, nlocal, *dlens, *olens, dlen, olen, jend, mglobal; 191529dcf524SDmitry Karpeev Mat M, Mreuse; 191682094794SBarry Smith MatScalar *vwork, *aa; 1917ce94432eSBarry Smith MPI_Comm comm; 191829dcf524SDmitry Karpeev IS isrow_new, iscol_new; 191982094794SBarry Smith Mat_SeqBAIJ *aij; 192082094794SBarry Smith 192182094794SBarry Smith PetscFunctionBegin; 19229566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)mat, &comm)); 19239566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 19249566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 192529dcf524SDmitry Karpeev /* The compression and expansion should be avoided. Doesn't point 192629dcf524SDmitry Karpeev out errors, might change the indices, hence buggey */ 19279566063dSJacob Faibussowitsch PetscCall(ISCompressIndicesGeneral(mat->rmap->N, mat->rmap->n, mat->rmap->bs, 1, &isrow, &isrow_new)); 1928864bd19bSPierre Jolivet if (isrow == iscol) { 1929864bd19bSPierre Jolivet iscol_new = isrow_new; 1930864bd19bSPierre Jolivet PetscCall(PetscObjectReference((PetscObject)iscol_new)); 1931864bd19bSPierre Jolivet } else PetscCall(ISCompressIndicesGeneral(mat->cmap->N, mat->cmap->n, mat->cmap->bs, 1, &iscol, &iscol_new)); 193282094794SBarry Smith 193382094794SBarry Smith if (call == MAT_REUSE_MATRIX) { 19349566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*newmat, "SubMatrix", (PetscObject *)&Mreuse)); 19355f80ce2aSJacob Faibussowitsch PetscCheck(Mreuse, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Submatrix passed in was not used before, cannot reuse"); 1936fdfbdca6SPierre Jolivet PetscCall(MatCreateSubMatrices_MPIBAIJ_local(mat, 1, &isrow_new, &iscol_new, MAT_REUSE_MATRIX, &Mreuse, sym)); 193782094794SBarry Smith } else { 1938fdfbdca6SPierre Jolivet PetscCall(MatCreateSubMatrices_MPIBAIJ_local(mat, 1, &isrow_new, &iscol_new, MAT_INITIAL_MATRIX, &Mreuse, sym)); 193982094794SBarry Smith } 19409566063dSJacob Faibussowitsch PetscCall(ISDestroy(&isrow_new)); 19419566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscol_new)); 194282094794SBarry Smith /* 194382094794SBarry Smith m - number of local rows 194482094794SBarry Smith n - number of columns (same on all processors) 194582094794SBarry Smith rstart - first row in new global matrix generated 194682094794SBarry Smith */ 19479566063dSJacob Faibussowitsch PetscCall(MatGetBlockSize(mat, &bs)); 19489566063dSJacob Faibussowitsch PetscCall(MatGetSize(Mreuse, &m, &n)); 194982094794SBarry Smith m = m / bs; 195082094794SBarry Smith n = n / bs; 195182094794SBarry Smith 195282094794SBarry Smith if (call == MAT_INITIAL_MATRIX) { 195357508eceSPierre Jolivet aij = (Mat_SeqBAIJ *)Mreuse->data; 195482094794SBarry Smith ii = aij->i; 195582094794SBarry Smith jj = aij->j; 195682094794SBarry Smith 195782094794SBarry Smith /* 195882094794SBarry Smith Determine the number of non-zeros in the diagonal and off-diagonal 195982094794SBarry Smith portions of the matrix in order to do correct preallocation 196082094794SBarry Smith */ 196182094794SBarry Smith 196282094794SBarry Smith /* first get start and end of "diagonal" columns */ 196382094794SBarry Smith if (csize == PETSC_DECIDE) { 19649566063dSJacob Faibussowitsch PetscCall(ISGetSize(isrow, &mglobal)); 196582094794SBarry Smith if (mglobal == n * bs) { /* square matrix */ 196682094794SBarry Smith nlocal = m; 196782094794SBarry Smith } else { 196882094794SBarry Smith nlocal = n / size + ((n % size) > rank); 196982094794SBarry Smith } 197082094794SBarry Smith } else { 197182094794SBarry Smith nlocal = csize / bs; 197282094794SBarry Smith } 19739566063dSJacob Faibussowitsch PetscCallMPI(MPI_Scan(&nlocal, &rend, 1, MPIU_INT, MPI_SUM, comm)); 197482094794SBarry Smith rstart = rend - nlocal; 1975aed4548fSBarry Smith PetscCheck(rank != size - 1 || rend == n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Local column sizes %" PetscInt_FMT " do not add up to total number of columns %" PetscInt_FMT, rend, n); 197682094794SBarry Smith 197782094794SBarry Smith /* next, compute all the lengths */ 19789566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(m + 1, &dlens, m + 1, &olens)); 197982094794SBarry Smith for (i = 0; i < m; i++) { 198082094794SBarry Smith jend = ii[i + 1] - ii[i]; 198182094794SBarry Smith olen = 0; 198282094794SBarry Smith dlen = 0; 198382094794SBarry Smith for (j = 0; j < jend; j++) { 198482094794SBarry Smith if (*jj < rstart || *jj >= rend) olen++; 198582094794SBarry Smith else dlen++; 198682094794SBarry Smith jj++; 198782094794SBarry Smith } 198882094794SBarry Smith olens[i] = olen; 198982094794SBarry Smith dlens[i] = dlen; 199082094794SBarry Smith } 19919566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, &M)); 19929566063dSJacob Faibussowitsch PetscCall(MatSetSizes(M, bs * m, bs * nlocal, PETSC_DECIDE, bs * n)); 1993fdfbdca6SPierre Jolivet PetscCall(MatSetType(M, sym ? ((PetscObject)mat)->type_name : MATMPIBAIJ)); 19949566063dSJacob Faibussowitsch PetscCall(MatMPIBAIJSetPreallocation(M, bs, 0, dlens, 0, olens)); 19959566063dSJacob Faibussowitsch PetscCall(MatMPISBAIJSetPreallocation(M, bs, 0, dlens, 0, olens)); 19969566063dSJacob Faibussowitsch PetscCall(PetscFree2(dlens, olens)); 199782094794SBarry Smith } else { 199882094794SBarry Smith PetscInt ml, nl; 199982094794SBarry Smith 200082094794SBarry Smith M = *newmat; 20019566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(M, &ml, &nl)); 20025f80ce2aSJacob Faibussowitsch PetscCheck(ml == m, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Previous matrix must be same size/layout as request"); 20039566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(M)); 200482094794SBarry Smith /* 200582094794SBarry Smith The next two lines are needed so we may call MatSetValues_MPIAIJ() below directly, 200682094794SBarry Smith rather than the slower MatSetValues(). 200782094794SBarry Smith */ 200882094794SBarry Smith M->was_assembled = PETSC_TRUE; 200982094794SBarry Smith M->assembled = PETSC_FALSE; 201082094794SBarry Smith } 20119566063dSJacob Faibussowitsch PetscCall(MatSetOption(M, MAT_ROW_ORIENTED, PETSC_FALSE)); 20129566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(M, &rstart, &rend)); 201357508eceSPierre Jolivet aij = (Mat_SeqBAIJ *)Mreuse->data; 201482094794SBarry Smith ii = aij->i; 201582094794SBarry Smith jj = aij->j; 201682094794SBarry Smith aa = aij->a; 201782094794SBarry Smith for (i = 0; i < m; i++) { 201882094794SBarry Smith row = rstart / bs + i; 201982094794SBarry Smith nz = ii[i + 1] - ii[i]; 20209371c9d4SSatish Balay cwork = jj; 20218e3a54c0SPierre Jolivet jj = PetscSafePointerPlusOffset(jj, nz); 20229371c9d4SSatish Balay vwork = aa; 20238e3a54c0SPierre Jolivet aa = PetscSafePointerPlusOffset(aa, nz * bs * bs); 20249566063dSJacob Faibussowitsch PetscCall(MatSetValuesBlocked_MPIBAIJ(M, 1, &row, nz, cwork, vwork, INSERT_VALUES)); 202582094794SBarry Smith } 202682094794SBarry Smith 20279566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(M, MAT_FINAL_ASSEMBLY)); 20289566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(M, MAT_FINAL_ASSEMBLY)); 202982094794SBarry Smith *newmat = M; 203082094794SBarry Smith 203182094794SBarry Smith /* save submatrix used in processor for next request */ 203282094794SBarry Smith if (call == MAT_INITIAL_MATRIX) { 20339566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)M, "SubMatrix", (PetscObject)Mreuse)); 20349566063dSJacob Faibussowitsch PetscCall(PetscObjectDereference((PetscObject)Mreuse)); 203582094794SBarry Smith } 20363ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 203782094794SBarry Smith } 203882094794SBarry Smith 203966976f2fSJacob Faibussowitsch static PetscErrorCode MatPermute_MPIBAIJ(Mat A, IS rowp, IS colp, Mat *B) 2040d71ae5a4SJacob Faibussowitsch { 204182094794SBarry Smith MPI_Comm comm, pcomm; 2042a0a83eb5SRémi Lacroix PetscInt clocal_size, nrows; 204382094794SBarry Smith const PetscInt *rows; 2044dbf0e21dSBarry Smith PetscMPIInt size; 2045a0a83eb5SRémi Lacroix IS crowp, lcolp; 204682094794SBarry Smith 204782094794SBarry Smith PetscFunctionBegin; 20489566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)A, &comm)); 204982094794SBarry Smith /* make a collective version of 'rowp' */ 20509566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)rowp, &pcomm)); 205182094794SBarry Smith if (pcomm == comm) { 205282094794SBarry Smith crowp = rowp; 205382094794SBarry Smith } else { 20549566063dSJacob Faibussowitsch PetscCall(ISGetSize(rowp, &nrows)); 20559566063dSJacob Faibussowitsch PetscCall(ISGetIndices(rowp, &rows)); 20569566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(comm, nrows, rows, PETSC_COPY_VALUES, &crowp)); 20579566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(rowp, &rows)); 205882094794SBarry Smith } 20599566063dSJacob Faibussowitsch PetscCall(ISSetPermutation(crowp)); 2060a0a83eb5SRémi Lacroix /* make a local version of 'colp' */ 20619566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)colp, &pcomm)); 20629566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(pcomm, &size)); 2063dbf0e21dSBarry Smith if (size == 1) { 206482094794SBarry Smith lcolp = colp; 206582094794SBarry Smith } else { 20669566063dSJacob Faibussowitsch PetscCall(ISAllGather(colp, &lcolp)); 206782094794SBarry Smith } 20689566063dSJacob Faibussowitsch PetscCall(ISSetPermutation(lcolp)); 206975f6568bSJed Brown /* now we just get the submatrix */ 20709566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(A, NULL, &clocal_size)); 2071fdfbdca6SPierre Jolivet PetscCall(MatCreateSubMatrix_MPIBAIJ_Private(A, crowp, lcolp, clocal_size, MAT_INITIAL_MATRIX, B, PETSC_FALSE)); 2072a0a83eb5SRémi Lacroix /* clean up */ 207348a46eb9SPierre Jolivet if (pcomm != comm) PetscCall(ISDestroy(&crowp)); 207448a46eb9SPierre Jolivet if (size > 1) PetscCall(ISDestroy(&lcolp)); 20753ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 207682094794SBarry Smith } 207782094794SBarry Smith 207866976f2fSJacob Faibussowitsch static PetscErrorCode MatGetGhosts_MPIBAIJ(Mat mat, PetscInt *nghosts, const PetscInt *ghosts[]) 2079d71ae5a4SJacob Faibussowitsch { 20808c7482ecSBarry Smith Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 20818c7482ecSBarry Smith Mat_SeqBAIJ *B = (Mat_SeqBAIJ *)baij->B->data; 20828c7482ecSBarry Smith 20838c7482ecSBarry Smith PetscFunctionBegin; 208426fbe8dcSKarl Rupp if (nghosts) *nghosts = B->nbs; 208526fbe8dcSKarl Rupp if (ghosts) *ghosts = baij->garray; 20863ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 20878c7482ecSBarry Smith } 20888c7482ecSBarry Smith 208966976f2fSJacob Faibussowitsch static PetscErrorCode MatGetSeqNonzeroStructure_MPIBAIJ(Mat A, Mat *newmat) 2090d71ae5a4SJacob Faibussowitsch { 2091f6d58c54SBarry Smith Mat B; 2092f6d58c54SBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 2093f6d58c54SBarry Smith Mat_SeqBAIJ *ad = (Mat_SeqBAIJ *)a->A->data, *bd = (Mat_SeqBAIJ *)a->B->data; 2094f6d58c54SBarry Smith Mat_SeqAIJ *b; 2095f4259b30SLisandro Dalcin PetscMPIInt size, rank, *recvcounts = NULL, *displs = NULL; 2096f6d58c54SBarry Smith PetscInt sendcount, i, *rstarts = A->rmap->range, n, cnt, j, bs = A->rmap->bs; 2097f6d58c54SBarry Smith PetscInt m, *garray = a->garray, *lens, *jsendbuf, *a_jsendbuf, *b_jsendbuf; 2098f6d58c54SBarry Smith 2099f6d58c54SBarry Smith PetscFunctionBegin; 21009566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)A), &size)); 21019566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)A), &rank)); 2102f6d58c54SBarry Smith 21032ef1f0ffSBarry Smith /* Tell every processor the number of nonzeros per row */ 21049566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(A->rmap->N / bs, &lens)); 2105ad540459SPierre Jolivet for (i = A->rmap->rstart / bs; i < A->rmap->rend / bs; i++) lens[i] = ad->i[i - A->rmap->rstart / bs + 1] - ad->i[i - A->rmap->rstart / bs] + bd->i[i - A->rmap->rstart / bs + 1] - bd->i[i - A->rmap->rstart / bs]; 21069566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(2 * size, &recvcounts)); 2107f6d58c54SBarry Smith displs = recvcounts + size; 2108f6d58c54SBarry Smith for (i = 0; i < size; i++) { 21096497c311SBarry Smith PetscCall(PetscMPIIntCast(A->rmap->range[i + 1] / bs - A->rmap->range[i] / bs, &recvcounts[i])); 21106497c311SBarry Smith PetscCall(PetscMPIIntCast(A->rmap->range[i] / bs, &displs[i])); 2111f6d58c54SBarry Smith } 21129566063dSJacob Faibussowitsch PetscCallMPI(MPI_Allgatherv(MPI_IN_PLACE, 0, MPI_DATATYPE_NULL, lens, recvcounts, displs, MPIU_INT, PetscObjectComm((PetscObject)A))); 21132ef1f0ffSBarry Smith /* Create the sequential matrix of the same type as the local block diagonal */ 21149566063dSJacob Faibussowitsch PetscCall(MatCreate(PETSC_COMM_SELF, &B)); 21159566063dSJacob Faibussowitsch PetscCall(MatSetSizes(B, A->rmap->N / bs, A->cmap->N / bs, PETSC_DETERMINE, PETSC_DETERMINE)); 21169566063dSJacob Faibussowitsch PetscCall(MatSetType(B, MATSEQAIJ)); 21179566063dSJacob Faibussowitsch PetscCall(MatSeqAIJSetPreallocation(B, 0, lens)); 2118f6d58c54SBarry Smith b = (Mat_SeqAIJ *)B->data; 2119f6d58c54SBarry Smith 21202ef1f0ffSBarry Smith /* Copy my part of matrix column indices over */ 2121f6d58c54SBarry Smith sendcount = ad->nz + bd->nz; 2122f6d58c54SBarry Smith jsendbuf = b->j + b->i[rstarts[rank] / bs]; 2123f6d58c54SBarry Smith a_jsendbuf = ad->j; 2124f6d58c54SBarry Smith b_jsendbuf = bd->j; 2125f6d58c54SBarry Smith n = A->rmap->rend / bs - A->rmap->rstart / bs; 2126f6d58c54SBarry Smith cnt = 0; 2127f6d58c54SBarry Smith for (i = 0; i < n; i++) { 2128f6d58c54SBarry Smith /* put in lower diagonal portion */ 2129f6d58c54SBarry Smith m = bd->i[i + 1] - bd->i[i]; 2130f6d58c54SBarry Smith while (m > 0) { 2131f6d58c54SBarry Smith /* is it above diagonal (in bd (compressed) numbering) */ 2132f6d58c54SBarry Smith if (garray[*b_jsendbuf] > A->rmap->rstart / bs + i) break; 2133f6d58c54SBarry Smith jsendbuf[cnt++] = garray[*b_jsendbuf++]; 2134f6d58c54SBarry Smith m--; 2135f6d58c54SBarry Smith } 2136f6d58c54SBarry Smith 2137f6d58c54SBarry Smith /* put in diagonal portion */ 2138ad540459SPierre Jolivet for (j = ad->i[i]; j < ad->i[i + 1]; j++) jsendbuf[cnt++] = A->rmap->rstart / bs + *a_jsendbuf++; 2139f6d58c54SBarry Smith 2140f6d58c54SBarry Smith /* put in upper diagonal portion */ 2141ad540459SPierre Jolivet while (m-- > 0) jsendbuf[cnt++] = garray[*b_jsendbuf++]; 2142f6d58c54SBarry Smith } 21435f80ce2aSJacob Faibussowitsch PetscCheck(cnt == sendcount, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Corrupted PETSc matrix: nz given %" PetscInt_FMT " actual nz %" PetscInt_FMT, sendcount, cnt); 2144f6d58c54SBarry Smith 21452ef1f0ffSBarry Smith /* Gather all column indices to all processors */ 2146f6d58c54SBarry Smith for (i = 0; i < size; i++) { 2147f6d58c54SBarry Smith recvcounts[i] = 0; 2148ad540459SPierre Jolivet for (j = A->rmap->range[i] / bs; j < A->rmap->range[i + 1] / bs; j++) recvcounts[i] += lens[j]; 2149f6d58c54SBarry Smith } 2150f6d58c54SBarry Smith displs[0] = 0; 2151ad540459SPierre Jolivet for (i = 1; i < size; i++) displs[i] = displs[i - 1] + recvcounts[i - 1]; 21529566063dSJacob Faibussowitsch PetscCallMPI(MPI_Allgatherv(MPI_IN_PLACE, 0, MPI_DATATYPE_NULL, b->j, recvcounts, displs, MPIU_INT, PetscObjectComm((PetscObject)A))); 21535804573cSPierre Jolivet /* Assemble the matrix into usable form (note numerical values not yet set) */ 2154f6d58c54SBarry Smith /* set the b->ilen (length of each row) values */ 21559566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(b->ilen, lens, A->rmap->N / bs)); 2156f6d58c54SBarry Smith /* set the b->i indices */ 2157f6d58c54SBarry Smith b->i[0] = 0; 2158ad540459SPierre Jolivet for (i = 1; i <= A->rmap->N / bs; i++) b->i[i] = b->i[i - 1] + lens[i - 1]; 21599566063dSJacob Faibussowitsch PetscCall(PetscFree(lens)); 21609566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY)); 21619566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY)); 21629566063dSJacob Faibussowitsch PetscCall(PetscFree(recvcounts)); 2163f6d58c54SBarry Smith 2164b94d7dedSBarry Smith PetscCall(MatPropagateSymmetryOptions(A, B)); 2165f6d58c54SBarry Smith *newmat = B; 21663ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2167f6d58c54SBarry Smith } 2168f6d58c54SBarry Smith 216966976f2fSJacob Faibussowitsch static PetscErrorCode MatSOR_MPIBAIJ(Mat matin, Vec bb, PetscReal omega, MatSORType flag, PetscReal fshift, PetscInt its, PetscInt lits, Vec xx) 2170d71ae5a4SJacob Faibussowitsch { 2171b1a666ecSBarry Smith Mat_MPIBAIJ *mat = (Mat_MPIBAIJ *)matin->data; 2172f4259b30SLisandro Dalcin Vec bb1 = NULL; 2173b1a666ecSBarry Smith 2174b1a666ecSBarry Smith PetscFunctionBegin; 2175b1a666ecSBarry Smith if (flag == SOR_APPLY_UPPER) { 21769566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx)); 21773ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2178b1a666ecSBarry Smith } 2179b1a666ecSBarry Smith 218048a46eb9SPierre Jolivet if (its > 1 || ~flag & SOR_ZERO_INITIAL_GUESS) PetscCall(VecDuplicate(bb, &bb1)); 21814e980039SJed Brown 2182b1a666ecSBarry Smith if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP) { 2183b1a666ecSBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 21849566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx)); 2185b1a666ecSBarry Smith its--; 2186b1a666ecSBarry Smith } 2187b1a666ecSBarry Smith 2188b1a666ecSBarry Smith while (its--) { 21899566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 21909566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 2191b1a666ecSBarry Smith 2192b1a666ecSBarry Smith /* update rhs: bb1 = bb - B*x */ 21939566063dSJacob Faibussowitsch PetscCall(VecScale(mat->lvec, -1.0)); 21949566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->multadd)(mat->B, mat->lvec, bb, bb1)); 2195b1a666ecSBarry Smith 2196b1a666ecSBarry Smith /* local sweep */ 21979566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, SOR_SYMMETRIC_SWEEP, fshift, lits, 1, xx)); 2198b1a666ecSBarry Smith } 2199b1a666ecSBarry Smith } else if (flag & SOR_LOCAL_FORWARD_SWEEP) { 2200b1a666ecSBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 22019566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx)); 2202b1a666ecSBarry Smith its--; 2203b1a666ecSBarry Smith } 2204b1a666ecSBarry Smith while (its--) { 22059566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 22069566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 2207b1a666ecSBarry Smith 2208b1a666ecSBarry Smith /* update rhs: bb1 = bb - B*x */ 22099566063dSJacob Faibussowitsch PetscCall(VecScale(mat->lvec, -1.0)); 22109566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->multadd)(mat->B, mat->lvec, bb, bb1)); 2211b1a666ecSBarry Smith 2212b1a666ecSBarry Smith /* local sweep */ 22139566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, SOR_FORWARD_SWEEP, fshift, lits, 1, xx)); 2214b1a666ecSBarry Smith } 2215b1a666ecSBarry Smith } else if (flag & SOR_LOCAL_BACKWARD_SWEEP) { 2216b1a666ecSBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 22179566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx)); 2218b1a666ecSBarry Smith its--; 2219b1a666ecSBarry Smith } 2220b1a666ecSBarry Smith while (its--) { 22219566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 22229566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 2223b1a666ecSBarry Smith 2224b1a666ecSBarry Smith /* update rhs: bb1 = bb - B*x */ 22259566063dSJacob Faibussowitsch PetscCall(VecScale(mat->lvec, -1.0)); 22269566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->multadd)(mat->B, mat->lvec, bb, bb1)); 2227b1a666ecSBarry Smith 2228b1a666ecSBarry Smith /* local sweep */ 22299566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, SOR_BACKWARD_SWEEP, fshift, lits, 1, xx)); 2230b1a666ecSBarry Smith } 2231ce94432eSBarry Smith } else SETERRQ(PetscObjectComm((PetscObject)matin), PETSC_ERR_SUP, "Parallel version of SOR requested not supported"); 2232b1a666ecSBarry Smith 22339566063dSJacob Faibussowitsch PetscCall(VecDestroy(&bb1)); 22343ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2235b1a666ecSBarry Smith } 2236b1a666ecSBarry Smith 223766976f2fSJacob Faibussowitsch static PetscErrorCode MatGetColumnReductions_MPIBAIJ(Mat A, PetscInt type, PetscReal *reductions) 2238d71ae5a4SJacob Faibussowitsch { 223947f7623dSRémi Lacroix Mat_MPIBAIJ *aij = (Mat_MPIBAIJ *)A->data; 2240a873a8cdSSam Reynolds PetscInt m, N, i, *garray = aij->garray; 224147f7623dSRémi Lacroix PetscInt ib, jb, bs = A->rmap->bs; 224247f7623dSRémi Lacroix Mat_SeqBAIJ *a_aij = (Mat_SeqBAIJ *)aij->A->data; 224347f7623dSRémi Lacroix MatScalar *a_val = a_aij->a; 224447f7623dSRémi Lacroix Mat_SeqBAIJ *b_aij = (Mat_SeqBAIJ *)aij->B->data; 224547f7623dSRémi Lacroix MatScalar *b_val = b_aij->a; 224647f7623dSRémi Lacroix PetscReal *work; 224747f7623dSRémi Lacroix 224847f7623dSRémi Lacroix PetscFunctionBegin; 22499566063dSJacob Faibussowitsch PetscCall(MatGetSize(A, &m, &N)); 22509566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(N, &work)); 2251857cbf51SRichard Tran Mills if (type == NORM_2) { 225247f7623dSRémi Lacroix for (i = a_aij->i[0]; i < a_aij->i[aij->A->rmap->n / bs]; i++) { 225347f7623dSRémi Lacroix for (jb = 0; jb < bs; jb++) { 225447f7623dSRémi Lacroix for (ib = 0; ib < bs; ib++) { 225547f7623dSRémi Lacroix work[A->cmap->rstart + a_aij->j[i] * bs + jb] += PetscAbsScalar(*a_val * *a_val); 225647f7623dSRémi Lacroix a_val++; 225747f7623dSRémi Lacroix } 225847f7623dSRémi Lacroix } 225947f7623dSRémi Lacroix } 226047f7623dSRémi Lacroix for (i = b_aij->i[0]; i < b_aij->i[aij->B->rmap->n / bs]; i++) { 226147f7623dSRémi Lacroix for (jb = 0; jb < bs; jb++) { 226247f7623dSRémi Lacroix for (ib = 0; ib < bs; ib++) { 226347f7623dSRémi Lacroix work[garray[b_aij->j[i]] * bs + jb] += PetscAbsScalar(*b_val * *b_val); 226447f7623dSRémi Lacroix b_val++; 226547f7623dSRémi Lacroix } 226647f7623dSRémi Lacroix } 226747f7623dSRémi Lacroix } 2268857cbf51SRichard Tran Mills } else if (type == NORM_1) { 226947f7623dSRémi Lacroix for (i = a_aij->i[0]; i < a_aij->i[aij->A->rmap->n / bs]; i++) { 227047f7623dSRémi Lacroix for (jb = 0; jb < bs; jb++) { 227147f7623dSRémi Lacroix for (ib = 0; ib < bs; ib++) { 227247f7623dSRémi Lacroix work[A->cmap->rstart + a_aij->j[i] * bs + jb] += PetscAbsScalar(*a_val); 227347f7623dSRémi Lacroix a_val++; 227447f7623dSRémi Lacroix } 227547f7623dSRémi Lacroix } 227647f7623dSRémi Lacroix } 227747f7623dSRémi Lacroix for (i = b_aij->i[0]; i < b_aij->i[aij->B->rmap->n / bs]; i++) { 227847f7623dSRémi Lacroix for (jb = 0; jb < bs; jb++) { 227947f7623dSRémi Lacroix for (ib = 0; ib < bs; ib++) { 228047f7623dSRémi Lacroix work[garray[b_aij->j[i]] * bs + jb] += PetscAbsScalar(*b_val); 228147f7623dSRémi Lacroix b_val++; 228247f7623dSRémi Lacroix } 228347f7623dSRémi Lacroix } 228447f7623dSRémi Lacroix } 2285857cbf51SRichard Tran Mills } else if (type == NORM_INFINITY) { 228647f7623dSRémi Lacroix for (i = a_aij->i[0]; i < a_aij->i[aij->A->rmap->n / bs]; i++) { 228747f7623dSRémi Lacroix for (jb = 0; jb < bs; jb++) { 228847f7623dSRémi Lacroix for (ib = 0; ib < bs; ib++) { 22896497c311SBarry Smith PetscInt col = A->cmap->rstart + a_aij->j[i] * bs + jb; 229047f7623dSRémi Lacroix work[col] = PetscMax(PetscAbsScalar(*a_val), work[col]); 229147f7623dSRémi Lacroix a_val++; 229247f7623dSRémi Lacroix } 229347f7623dSRémi Lacroix } 229447f7623dSRémi Lacroix } 229547f7623dSRémi Lacroix for (i = b_aij->i[0]; i < b_aij->i[aij->B->rmap->n / bs]; i++) { 229647f7623dSRémi Lacroix for (jb = 0; jb < bs; jb++) { 229747f7623dSRémi Lacroix for (ib = 0; ib < bs; ib++) { 22986497c311SBarry Smith PetscInt col = garray[b_aij->j[i]] * bs + jb; 229947f7623dSRémi Lacroix work[col] = PetscMax(PetscAbsScalar(*b_val), work[col]); 230047f7623dSRémi Lacroix b_val++; 230147f7623dSRémi Lacroix } 230247f7623dSRémi Lacroix } 230347f7623dSRémi Lacroix } 2304857cbf51SRichard Tran Mills } else if (type == REDUCTION_SUM_REALPART || type == REDUCTION_MEAN_REALPART) { 2305a873a8cdSSam Reynolds for (i = a_aij->i[0]; i < a_aij->i[aij->A->rmap->n / bs]; i++) { 2306a873a8cdSSam Reynolds for (jb = 0; jb < bs; jb++) { 2307a873a8cdSSam Reynolds for (ib = 0; ib < bs; ib++) { 2308857cbf51SRichard Tran Mills work[A->cmap->rstart + a_aij->j[i] * bs + jb] += PetscRealPart(*a_val); 2309a873a8cdSSam Reynolds a_val++; 2310a873a8cdSSam Reynolds } 2311a873a8cdSSam Reynolds } 2312a873a8cdSSam Reynolds } 2313a873a8cdSSam Reynolds for (i = b_aij->i[0]; i < b_aij->i[aij->B->rmap->n / bs]; i++) { 2314a873a8cdSSam Reynolds for (jb = 0; jb < bs; jb++) { 2315a873a8cdSSam Reynolds for (ib = 0; ib < bs; ib++) { 2316857cbf51SRichard Tran Mills work[garray[b_aij->j[i]] * bs + jb] += PetscRealPart(*b_val); 2317a873a8cdSSam Reynolds b_val++; 2318a873a8cdSSam Reynolds } 2319a873a8cdSSam Reynolds } 2320a873a8cdSSam Reynolds } 2321857cbf51SRichard Tran Mills } else if (type == REDUCTION_SUM_IMAGINARYPART || type == REDUCTION_MEAN_IMAGINARYPART) { 2322857cbf51SRichard Tran Mills for (i = a_aij->i[0]; i < a_aij->i[aij->A->rmap->n / bs]; i++) { 2323857cbf51SRichard Tran Mills for (jb = 0; jb < bs; jb++) { 2324857cbf51SRichard Tran Mills for (ib = 0; ib < bs; ib++) { 2325857cbf51SRichard Tran Mills work[A->cmap->rstart + a_aij->j[i] * bs + jb] += PetscImaginaryPart(*a_val); 2326857cbf51SRichard Tran Mills a_val++; 2327857cbf51SRichard Tran Mills } 2328857cbf51SRichard Tran Mills } 2329857cbf51SRichard Tran Mills } 2330857cbf51SRichard Tran Mills for (i = b_aij->i[0]; i < b_aij->i[aij->B->rmap->n / bs]; i++) { 2331857cbf51SRichard Tran Mills for (jb = 0; jb < bs; jb++) { 2332857cbf51SRichard Tran Mills for (ib = 0; ib < bs; ib++) { 2333857cbf51SRichard Tran Mills work[garray[b_aij->j[i]] * bs + jb] += PetscImaginaryPart(*b_val); 2334857cbf51SRichard Tran Mills b_val++; 2335857cbf51SRichard Tran Mills } 2336857cbf51SRichard Tran Mills } 2337857cbf51SRichard Tran Mills } 2338857cbf51SRichard Tran Mills } else SETERRQ(PetscObjectComm((PetscObject)A), PETSC_ERR_ARG_WRONG, "Unknown reduction type"); 2339857cbf51SRichard Tran Mills if (type == NORM_INFINITY) { 2340e91c04dfSPierre Jolivet PetscCallMPI(MPIU_Allreduce(work, reductions, N, MPIU_REAL, MPIU_MAX, PetscObjectComm((PetscObject)A))); 234147f7623dSRémi Lacroix } else { 2342e91c04dfSPierre Jolivet PetscCallMPI(MPIU_Allreduce(work, reductions, N, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)A))); 234347f7623dSRémi Lacroix } 23449566063dSJacob Faibussowitsch PetscCall(PetscFree(work)); 2345857cbf51SRichard Tran Mills if (type == NORM_2) { 2346a873a8cdSSam Reynolds for (i = 0; i < N; i++) reductions[i] = PetscSqrtReal(reductions[i]); 2347857cbf51SRichard Tran Mills } else if (type == REDUCTION_MEAN_REALPART || type == REDUCTION_MEAN_IMAGINARYPART) { 2348a873a8cdSSam Reynolds for (i = 0; i < N; i++) reductions[i] /= m; 234947f7623dSRémi Lacroix } 23503ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 235147f7623dSRémi Lacroix } 235247f7623dSRémi Lacroix 235366976f2fSJacob Faibussowitsch static PetscErrorCode MatInvertBlockDiagonal_MPIBAIJ(Mat A, const PetscScalar **values) 2354d71ae5a4SJacob Faibussowitsch { 2355bbead8a2SBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 2356bbead8a2SBarry Smith 2357bbead8a2SBarry Smith PetscFunctionBegin; 23589566063dSJacob Faibussowitsch PetscCall(MatInvertBlockDiagonal(a->A, values)); 23597b6c816cSBarry Smith A->factorerrortype = a->A->factorerrortype; 23607b6c816cSBarry Smith A->factorerror_zeropivot_value = a->A->factorerror_zeropivot_value; 23617b6c816cSBarry Smith A->factorerror_zeropivot_row = a->A->factorerror_zeropivot_row; 23623ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2363bbead8a2SBarry Smith } 2364bbead8a2SBarry Smith 236566976f2fSJacob Faibussowitsch static PetscErrorCode MatShift_MPIBAIJ(Mat Y, PetscScalar a) 2366d71ae5a4SJacob Faibussowitsch { 23677d68702bSBarry Smith Mat_MPIBAIJ *maij = (Mat_MPIBAIJ *)Y->data; 23686f33a894SBarry Smith Mat_SeqBAIJ *aij = (Mat_SeqBAIJ *)maij->A->data; 23697d68702bSBarry Smith 23707d68702bSBarry Smith PetscFunctionBegin; 23716f33a894SBarry Smith if (!Y->preallocated) { 23729566063dSJacob Faibussowitsch PetscCall(MatMPIBAIJSetPreallocation(Y, Y->rmap->bs, 1, NULL, 0, NULL)); 23736f33a894SBarry Smith } else if (!aij->nz) { 2374b83222d8SBarry Smith PetscInt nonew = aij->nonew; 23759566063dSJacob Faibussowitsch PetscCall(MatSeqBAIJSetPreallocation(maij->A, Y->rmap->bs, 1, NULL)); 2376b83222d8SBarry Smith aij->nonew = nonew; 23777d68702bSBarry Smith } 23789566063dSJacob Faibussowitsch PetscCall(MatShift_Basic(Y, a)); 23793ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 23807d68702bSBarry Smith } 23818c7482ecSBarry Smith 238266976f2fSJacob Faibussowitsch static PetscErrorCode MatGetDiagonalBlock_MPIBAIJ(Mat A, Mat *a) 2383d71ae5a4SJacob Faibussowitsch { 2384a5b7ff6bSBarry Smith PetscFunctionBegin; 2385a5b7ff6bSBarry Smith *a = ((Mat_MPIBAIJ *)A->data)->A; 23863ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2387a5b7ff6bSBarry Smith } 2388a5b7ff6bSBarry Smith 238917ea310bSPierre Jolivet static PetscErrorCode MatEliminateZeros_MPIBAIJ(Mat A, PetscBool keep) 239017ea310bSPierre Jolivet { 239117ea310bSPierre Jolivet Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 239217ea310bSPierre Jolivet 239317ea310bSPierre Jolivet PetscFunctionBegin; 239417ea310bSPierre Jolivet PetscCall(MatEliminateZeros_SeqBAIJ(a->A, keep)); // possibly keep zero diagonal coefficients 239517ea310bSPierre Jolivet PetscCall(MatEliminateZeros_SeqBAIJ(a->B, PETSC_FALSE)); // never keep zero diagonal coefficients 239617ea310bSPierre Jolivet PetscFunctionReturn(PETSC_SUCCESS); 239717ea310bSPierre Jolivet } 239817ea310bSPierre Jolivet 23993964eb88SJed Brown static struct _MatOps MatOps_Values = {MatSetValues_MPIBAIJ, 2400cc2dc46cSBarry Smith MatGetRow_MPIBAIJ, 2401cc2dc46cSBarry Smith MatRestoreRow_MPIBAIJ, 2402cc2dc46cSBarry Smith MatMult_MPIBAIJ, 240397304618SKris Buschelman /* 4*/ MatMultAdd_MPIBAIJ, 24047c922b88SBarry Smith MatMultTranspose_MPIBAIJ, 24057c922b88SBarry Smith MatMultTransposeAdd_MPIBAIJ, 2406f4259b30SLisandro Dalcin NULL, 2407f4259b30SLisandro Dalcin NULL, 2408f4259b30SLisandro Dalcin NULL, 2409f4259b30SLisandro Dalcin /*10*/ NULL, 2410f4259b30SLisandro Dalcin NULL, 2411f4259b30SLisandro Dalcin NULL, 2412b1a666ecSBarry Smith MatSOR_MPIBAIJ, 2413cc2dc46cSBarry Smith MatTranspose_MPIBAIJ, 241497304618SKris Buschelman /*15*/ MatGetInfo_MPIBAIJ, 24157fc3c18eSBarry Smith MatEqual_MPIBAIJ, 2416cc2dc46cSBarry Smith MatGetDiagonal_MPIBAIJ, 2417cc2dc46cSBarry Smith MatDiagonalScale_MPIBAIJ, 2418cc2dc46cSBarry Smith MatNorm_MPIBAIJ, 241997304618SKris Buschelman /*20*/ MatAssemblyBegin_MPIBAIJ, 2420cc2dc46cSBarry Smith MatAssemblyEnd_MPIBAIJ, 2421cc2dc46cSBarry Smith MatSetOption_MPIBAIJ, 2422cc2dc46cSBarry Smith MatZeroEntries_MPIBAIJ, 2423d519adbfSMatthew Knepley /*24*/ MatZeroRows_MPIBAIJ, 2424f4259b30SLisandro Dalcin NULL, 2425f4259b30SLisandro Dalcin NULL, 2426f4259b30SLisandro Dalcin NULL, 2427f4259b30SLisandro Dalcin NULL, 242826cec326SBarry Smith /*29*/ MatSetUp_MPI_Hash, 2429f4259b30SLisandro Dalcin NULL, 2430f4259b30SLisandro Dalcin NULL, 2431a5b7ff6bSBarry Smith MatGetDiagonalBlock_MPIBAIJ, 2432f4259b30SLisandro Dalcin NULL, 2433d519adbfSMatthew Knepley /*34*/ MatDuplicate_MPIBAIJ, 2434f4259b30SLisandro Dalcin NULL, 2435f4259b30SLisandro Dalcin NULL, 2436f4259b30SLisandro Dalcin NULL, 2437f4259b30SLisandro Dalcin NULL, 2438d519adbfSMatthew Knepley /*39*/ MatAXPY_MPIBAIJ, 24397dae84e0SHong Zhang MatCreateSubMatrices_MPIBAIJ, 2440cc2dc46cSBarry Smith MatIncreaseOverlap_MPIBAIJ, 2441cc2dc46cSBarry Smith MatGetValues_MPIBAIJ, 24423c896bc6SHong Zhang MatCopy_MPIBAIJ, 2443f4259b30SLisandro Dalcin /*44*/ NULL, 2444cc2dc46cSBarry Smith MatScale_MPIBAIJ, 24457d68702bSBarry Smith MatShift_MPIBAIJ, 2446f4259b30SLisandro Dalcin NULL, 24476f0a72daSMatthew G. Knepley MatZeroRowsColumns_MPIBAIJ, 2448f4259b30SLisandro Dalcin /*49*/ NULL, 2449f4259b30SLisandro Dalcin NULL, 2450f4259b30SLisandro Dalcin NULL, 2451f4259b30SLisandro Dalcin NULL, 2452f4259b30SLisandro Dalcin NULL, 245393dfae19SHong Zhang /*54*/ MatFDColoringCreate_MPIXAIJ, 2454f4259b30SLisandro Dalcin NULL, 2455cc2dc46cSBarry Smith MatSetUnfactored_MPIBAIJ, 245682094794SBarry Smith MatPermute_MPIBAIJ, 2457cc2dc46cSBarry Smith MatSetValuesBlocked_MPIBAIJ, 24587dae84e0SHong Zhang /*59*/ MatCreateSubMatrix_MPIBAIJ, 2459f14a1c24SBarry Smith MatDestroy_MPIBAIJ, 2460f14a1c24SBarry Smith MatView_MPIBAIJ, 2461f4259b30SLisandro Dalcin NULL, 2462f4259b30SLisandro Dalcin NULL, 2463f4259b30SLisandro Dalcin /*64*/ NULL, 2464f4259b30SLisandro Dalcin NULL, 2465f4259b30SLisandro Dalcin NULL, 2466f4259b30SLisandro Dalcin NULL, 24678bb0f5c6SPierre Jolivet MatGetRowMaxAbs_MPIBAIJ, 24688bb0f5c6SPierre Jolivet /*69*/ NULL, 2469f4259b30SLisandro Dalcin NULL, 2470f4259b30SLisandro Dalcin NULL, 2471f6d58c54SBarry Smith MatFDColoringApply_BAIJ, 2472f4259b30SLisandro Dalcin NULL, 24738bb0f5c6SPierre Jolivet /*74*/ NULL, 2474f4259b30SLisandro Dalcin NULL, 2475f4259b30SLisandro Dalcin NULL, 2476f4259b30SLisandro Dalcin NULL, 24775bba2384SShri Abhyankar MatLoad_MPIBAIJ, 24788bb0f5c6SPierre Jolivet /*79*/ NULL, 24798bb0f5c6SPierre Jolivet NULL, 24808bb0f5c6SPierre Jolivet NULL, 24818bb0f5c6SPierre Jolivet NULL, 24828bb0f5c6SPierre Jolivet NULL, 2483f4259b30SLisandro Dalcin /*84*/ NULL, 2484f4259b30SLisandro Dalcin NULL, 2485f4259b30SLisandro Dalcin NULL, 2486f4259b30SLisandro Dalcin NULL, 2487f4259b30SLisandro Dalcin NULL, 2488f4259b30SLisandro Dalcin /*89*/ NULL, 2489f4259b30SLisandro Dalcin NULL, 2490f4259b30SLisandro Dalcin NULL, 2491f4259b30SLisandro Dalcin NULL, 24928bb0f5c6SPierre Jolivet MatConjugate_MPIBAIJ, 2493f4259b30SLisandro Dalcin /*94*/ NULL, 2494f4259b30SLisandro Dalcin NULL, 24958bb0f5c6SPierre Jolivet MatRealPart_MPIBAIJ, 24968bb0f5c6SPierre Jolivet MatImaginaryPart_MPIBAIJ, 2497f4259b30SLisandro Dalcin NULL, 2498f4259b30SLisandro Dalcin /*99*/ NULL, 2499f4259b30SLisandro Dalcin NULL, 2500f4259b30SLisandro Dalcin NULL, 2501f4259b30SLisandro Dalcin NULL, 2502f4259b30SLisandro Dalcin NULL, 2503421480d9SBarry Smith /*104*/ MatGetSeqNonzeroStructure_MPIBAIJ, 25048bb0f5c6SPierre Jolivet NULL, 25058bb0f5c6SPierre Jolivet MatGetGhosts_MPIBAIJ, 2506f4259b30SLisandro Dalcin NULL, 2507421480d9SBarry Smith NULL, 2508f4259b30SLisandro Dalcin /*109*/ NULL, 2509f4259b30SLisandro Dalcin NULL, 2510f4259b30SLisandro Dalcin NULL, 2511f4259b30SLisandro Dalcin NULL, 2512421480d9SBarry Smith MatGetMultiProcBlock_MPIBAIJ, 2513421480d9SBarry Smith /*114*/ NULL, 25148bb0f5c6SPierre Jolivet MatGetColumnReductions_MPIBAIJ, 25158bb0f5c6SPierre Jolivet MatInvertBlockDiagonal_MPIBAIJ, 2516f4259b30SLisandro Dalcin NULL, 2517421480d9SBarry Smith NULL, 2518f4259b30SLisandro Dalcin /*119*/ NULL, 2519f4259b30SLisandro Dalcin NULL, 2520f4259b30SLisandro Dalcin NULL, 2521f4259b30SLisandro Dalcin NULL, 25228bb0f5c6SPierre Jolivet NULL, 2523f4259b30SLisandro Dalcin /*124*/ NULL, 2524f4259b30SLisandro Dalcin NULL, 25258bb0f5c6SPierre Jolivet MatSetBlockSizes_Default, 2526f4259b30SLisandro Dalcin NULL, 2527421480d9SBarry Smith MatFDColoringSetUp_MPIXAIJ, 2528421480d9SBarry Smith /*129*/ NULL, 25298bb0f5c6SPierre Jolivet MatCreateMPIMatConcatenateSeqMat_MPIBAIJ, 2530f4259b30SLisandro Dalcin NULL, 2531f4259b30SLisandro Dalcin NULL, 2532421480d9SBarry Smith NULL, 2533f4259b30SLisandro Dalcin /*134*/ NULL, 2534f4259b30SLisandro Dalcin NULL, 2535eede4a3fSMark Adams MatEliminateZeros_MPIBAIJ, 25364cc2b5b5SPierre Jolivet MatGetRowSumAbs_MPIBAIJ, 253742ce410bSJunchao Zhang NULL, 2538421480d9SBarry Smith /*139*/ NULL, 253942ce410bSJunchao Zhang NULL, 254003db1824SAlex Lindsay MatCopyHashToXAIJ_MPI_Hash, 2541c2be7ffeSStefano Zampini NULL, 254203db1824SAlex Lindsay NULL}; 254379bdfe76SSatish Balay 2544cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIBAIJ_MPISBAIJ(Mat, MatType, MatReuse, Mat *); 2545c9225affSStefano Zampini PETSC_INTERN PetscErrorCode MatConvert_XAIJ_IS(Mat, MatType, MatReuse, Mat *); 2546d94109b8SHong Zhang 254766976f2fSJacob Faibussowitsch static PetscErrorCode MatMPIBAIJSetPreallocationCSR_MPIBAIJ(Mat B, PetscInt bs, const PetscInt ii[], const PetscInt jj[], const PetscScalar V[]) 2548d71ae5a4SJacob Faibussowitsch { 2549b8d659d7SLisandro Dalcin PetscInt m, rstart, cstart, cend; 2550f4259b30SLisandro Dalcin PetscInt i, j, dlen, olen, nz, nz_max = 0, *d_nnz = NULL, *o_nnz = NULL; 2551f4259b30SLisandro Dalcin const PetscInt *JJ = NULL; 2552f4259b30SLisandro Dalcin PetscScalar *values = NULL; 2553d47bf9aaSJed Brown PetscBool roworiented = ((Mat_MPIBAIJ *)B->data)->roworiented; 25543bd0feecSPierre Jolivet PetscBool nooffprocentries; 2555aac34f13SBarry Smith 2556aac34f13SBarry Smith PetscFunctionBegin; 25579566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetBlockSize(B->rmap, bs)); 25589566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetBlockSize(B->cmap, bs)); 25599566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->rmap)); 25609566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->cmap)); 25619566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetBlockSize(B->rmap, &bs)); 2562d0f46423SBarry Smith m = B->rmap->n / bs; 2563d0f46423SBarry Smith rstart = B->rmap->rstart / bs; 2564d0f46423SBarry Smith cstart = B->cmap->rstart / bs; 2565d0f46423SBarry Smith cend = B->cmap->rend / bs; 2566b8d659d7SLisandro Dalcin 25675f80ce2aSJacob Faibussowitsch PetscCheck(!ii[0], PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "ii[0] must be 0 but it is %" PetscInt_FMT, ii[0]); 25689566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(m, &d_nnz, m, &o_nnz)); 2569aac34f13SBarry Smith for (i = 0; i < m; i++) { 2570cf12db73SBarry Smith nz = ii[i + 1] - ii[i]; 25715f80ce2aSJacob Faibussowitsch PetscCheck(nz >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Local row %" PetscInt_FMT " has a negative number of columns %" PetscInt_FMT, i, nz); 2572b8d659d7SLisandro Dalcin nz_max = PetscMax(nz_max, nz); 257337cd3c0dSBarry Smith dlen = 0; 257437cd3c0dSBarry Smith olen = 0; 2575cf12db73SBarry Smith JJ = jj + ii[i]; 2576b8d659d7SLisandro Dalcin for (j = 0; j < nz; j++) { 257737cd3c0dSBarry Smith if (*JJ < cstart || *JJ >= cend) olen++; 257837cd3c0dSBarry Smith else dlen++; 2579aac34f13SBarry Smith JJ++; 2580aac34f13SBarry Smith } 258137cd3c0dSBarry Smith d_nnz[i] = dlen; 258237cd3c0dSBarry Smith o_nnz[i] = olen; 2583aac34f13SBarry Smith } 25849566063dSJacob Faibussowitsch PetscCall(MatMPIBAIJSetPreallocation(B, bs, 0, d_nnz, 0, o_nnz)); 25859566063dSJacob Faibussowitsch PetscCall(PetscFree2(d_nnz, o_nnz)); 2586aac34f13SBarry Smith 2587b8d659d7SLisandro Dalcin values = (PetscScalar *)V; 258848a46eb9SPierre Jolivet if (!values) PetscCall(PetscCalloc1(bs * bs * nz_max, &values)); 2589b8d659d7SLisandro Dalcin for (i = 0; i < m; i++) { 2590b8d659d7SLisandro Dalcin PetscInt row = i + rstart; 2591cf12db73SBarry Smith PetscInt ncols = ii[i + 1] - ii[i]; 2592cf12db73SBarry Smith const PetscInt *icols = jj + ii[i]; 2593bb80cfbbSStefano Zampini if (bs == 1 || !roworiented) { /* block ordering matches the non-nested layout of MatSetValues so we can insert entire rows */ 2594cf12db73SBarry Smith const PetscScalar *svals = values + (V ? (bs * bs * ii[i]) : 0); 25959566063dSJacob Faibussowitsch PetscCall(MatSetValuesBlocked_MPIBAIJ(B, 1, &row, ncols, icols, svals, INSERT_VALUES)); 25963adadaf3SJed Brown } else { /* block ordering does not match so we can only insert one block at a time. */ 25973adadaf3SJed Brown PetscInt j; 25983adadaf3SJed Brown for (j = 0; j < ncols; j++) { 25993adadaf3SJed Brown const PetscScalar *svals = values + (V ? (bs * bs * (ii[i] + j)) : 0); 26009566063dSJacob Faibussowitsch PetscCall(MatSetValuesBlocked_MPIBAIJ(B, 1, &row, 1, &icols[j], svals, INSERT_VALUES)); 26013adadaf3SJed Brown } 26023adadaf3SJed Brown } 2603aac34f13SBarry Smith } 2604aac34f13SBarry Smith 26059566063dSJacob Faibussowitsch if (!V) PetscCall(PetscFree(values)); 26063bd0feecSPierre Jolivet nooffprocentries = B->nooffprocentries; 26073bd0feecSPierre Jolivet B->nooffprocentries = PETSC_TRUE; 26089566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY)); 26099566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY)); 26103bd0feecSPierre Jolivet B->nooffprocentries = nooffprocentries; 26113bd0feecSPierre Jolivet 26129566063dSJacob Faibussowitsch PetscCall(MatSetOption(B, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE)); 26133ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2614aac34f13SBarry Smith } 2615aac34f13SBarry Smith 2616aac34f13SBarry Smith /*@C 261711a5261eSBarry Smith MatMPIBAIJSetPreallocationCSR - Creates a sparse parallel matrix in `MATBAIJ` format using the given nonzero structure and (optional) numerical values 2618aac34f13SBarry Smith 2619d083f849SBarry Smith Collective 2620aac34f13SBarry Smith 2621aac34f13SBarry Smith Input Parameters: 26221c4f3114SJed Brown + B - the matrix 2623dfb205c3SBarry Smith . bs - the block size 262420f4b53cSBarry Smith . i - the indices into `j` for the start of each local row (starts with zero) 2625aac34f13SBarry Smith . j - the column indices for each local row (starts with zero) these must be sorted for each row 2626d8a51d2aSBarry Smith - v - optional values in the matrix, use `NULL` if not provided 2627aac34f13SBarry Smith 2628664954b6SBarry Smith Level: advanced 2629aac34f13SBarry Smith 263095452b02SPatrick Sanan Notes: 2631d8a51d2aSBarry Smith The `i`, `j`, and `v` arrays ARE copied by this routine into the internal format used by PETSc; 2632d8a51d2aSBarry Smith thus you CANNOT change the matrix entries by changing the values of `v` after you have 2633d8a51d2aSBarry Smith called this routine. 2634d8a51d2aSBarry Smith 263511a5261eSBarry Smith The order of the entries in values is specified by the `MatOption` `MAT_ROW_ORIENTED`. For example, C programs 263611a5261eSBarry Smith may want to use the default `MAT_ROW_ORIENTED` with value `PETSC_TRUE` and use an array v[nnz][bs][bs] where the second index is 26373adadaf3SJed Brown over rows within a block and the last index is over columns within a block row. Fortran programs will likely set 263811a5261eSBarry Smith `MAT_ROW_ORIENTED` with value `PETSC_FALSE` and use a Fortran array v(bs,bs,nnz) in which the first index is over rows within a 26393adadaf3SJed Brown block column and the second index is over columns within a block. 26403adadaf3SJed Brown 2641664954b6SBarry Smith Though this routine has Preallocation() in the name it also sets the exact nonzero locations of the matrix entries and usually the numerical values as well 2642664954b6SBarry Smith 26437d2c085eSPierre Jolivet .seealso: `Mat`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIBAIJSetPreallocation()`, `MatCreateAIJ()`, `MATMPIAIJ`, `MatCreateMPIBAIJWithArrays()`, `MATMPIBAIJ` 2644aac34f13SBarry Smith @*/ 2645d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIBAIJSetPreallocationCSR(Mat B, PetscInt bs, const PetscInt i[], const PetscInt j[], const PetscScalar v[]) 2646d71ae5a4SJacob Faibussowitsch { 2647aac34f13SBarry Smith PetscFunctionBegin; 26486ba663aaSJed Brown PetscValidHeaderSpecific(B, MAT_CLASSID, 1); 26496ba663aaSJed Brown PetscValidType(B, 1); 26506ba663aaSJed Brown PetscValidLogicalCollectiveInt(B, bs, 2); 2651cac4c232SBarry Smith PetscTryMethod(B, "MatMPIBAIJSetPreallocationCSR_C", (Mat, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[]), (B, bs, i, j, v)); 26523ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2653aac34f13SBarry Smith } 2654aac34f13SBarry Smith 2655d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIBAIJSetPreallocation_MPIBAIJ(Mat B, PetscInt bs, PetscInt d_nz, const PetscInt *d_nnz, PetscInt o_nz, const PetscInt *o_nnz) 2656d71ae5a4SJacob Faibussowitsch { 2657ad79cf63SBarry Smith Mat_MPIBAIJ *b = (Mat_MPIBAIJ *)B->data; 2658535b19f3SBarry Smith PetscInt i; 26595d2a9ed1SStefano Zampini PetscMPIInt size; 2660a23d5eceSKris Buschelman 2661a23d5eceSKris Buschelman PetscFunctionBegin; 2662ad79cf63SBarry Smith if (B->hash_active) { 2663aea10558SJacob Faibussowitsch B->ops[0] = b->cops; 2664ad79cf63SBarry Smith B->hash_active = PETSC_FALSE; 2665ad79cf63SBarry Smith } 2666ad79cf63SBarry Smith if (!B->preallocated) PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)B), bs, &B->bstash)); 266758b7e2c1SStefano Zampini PetscCall(MatSetBlockSize(B, bs)); 26689566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->rmap)); 26699566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->cmap)); 26709566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetBlockSize(B->rmap, &bs)); 2671899cda47SBarry Smith 2672a23d5eceSKris Buschelman if (d_nnz) { 2673ad540459SPierre Jolivet for (i = 0; i < B->rmap->n / bs; i++) PetscCheck(d_nnz[i] >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "d_nnz cannot be less than -1: local row %" PetscInt_FMT " value %" PetscInt_FMT, i, d_nnz[i]); 2674a23d5eceSKris Buschelman } 2675a23d5eceSKris Buschelman if (o_nnz) { 2676ad540459SPierre Jolivet for (i = 0; i < B->rmap->n / bs; i++) PetscCheck(o_nnz[i] >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "o_nnz cannot be less than -1: local row %" PetscInt_FMT " value %" PetscInt_FMT, i, o_nnz[i]); 2677a23d5eceSKris Buschelman } 2678a23d5eceSKris Buschelman 2679a23d5eceSKris Buschelman b->bs2 = bs * bs; 2680d0f46423SBarry Smith b->mbs = B->rmap->n / bs; 2681d0f46423SBarry Smith b->nbs = B->cmap->n / bs; 2682d0f46423SBarry Smith b->Mbs = B->rmap->N / bs; 2683d0f46423SBarry Smith b->Nbs = B->cmap->N / bs; 2684a23d5eceSKris Buschelman 2685ad540459SPierre Jolivet for (i = 0; i <= b->size; i++) b->rangebs[i] = B->rmap->range[i] / bs; 2686d0f46423SBarry Smith b->rstartbs = B->rmap->rstart / bs; 2687d0f46423SBarry Smith b->rendbs = B->rmap->rend / bs; 2688d0f46423SBarry Smith b->cstartbs = B->cmap->rstart / bs; 2689d0f46423SBarry Smith b->cendbs = B->cmap->rend / bs; 2690a23d5eceSKris Buschelman 2691cb7b82ddSBarry Smith #if defined(PETSC_USE_CTABLE) 2692eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIDestroy(&b->colmap)); 2693cb7b82ddSBarry Smith #else 26949566063dSJacob Faibussowitsch PetscCall(PetscFree(b->colmap)); 2695cb7b82ddSBarry Smith #endif 26969566063dSJacob Faibussowitsch PetscCall(PetscFree(b->garray)); 26979566063dSJacob Faibussowitsch PetscCall(VecDestroy(&b->lvec)); 26989566063dSJacob Faibussowitsch PetscCall(VecScatterDestroy(&b->Mvctx)); 2699cb7b82ddSBarry Smith 27009566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)B), &size)); 2701c508b908SBarry Smith 2702c508b908SBarry Smith MatSeqXAIJGetOptions_Private(b->B); 27039566063dSJacob Faibussowitsch PetscCall(MatDestroy(&b->B)); 27049566063dSJacob Faibussowitsch PetscCall(MatCreate(PETSC_COMM_SELF, &b->B)); 27059566063dSJacob Faibussowitsch PetscCall(MatSetSizes(b->B, B->rmap->n, size > 1 ? B->cmap->N : 0, B->rmap->n, size > 1 ? B->cmap->N : 0)); 27069566063dSJacob Faibussowitsch PetscCall(MatSetType(b->B, MATSEQBAIJ)); 2707c508b908SBarry Smith MatSeqXAIJRestoreOptions_Private(b->B); 2708cb7b82ddSBarry Smith 2709c508b908SBarry Smith MatSeqXAIJGetOptions_Private(b->A); 2710ad79cf63SBarry Smith PetscCall(MatDestroy(&b->A)); 27119566063dSJacob Faibussowitsch PetscCall(MatCreate(PETSC_COMM_SELF, &b->A)); 27129566063dSJacob Faibussowitsch PetscCall(MatSetSizes(b->A, B->rmap->n, B->cmap->n, B->rmap->n, B->cmap->n)); 27139566063dSJacob Faibussowitsch PetscCall(MatSetType(b->A, MATSEQBAIJ)); 2714c508b908SBarry Smith MatSeqXAIJRestoreOptions_Private(b->A); 2715a23d5eceSKris Buschelman 27169566063dSJacob Faibussowitsch PetscCall(MatSeqBAIJSetPreallocation(b->A, bs, d_nz, d_nnz)); 27179566063dSJacob Faibussowitsch PetscCall(MatSeqBAIJSetPreallocation(b->B, bs, o_nz, o_nnz)); 2718526dfc15SBarry Smith B->preallocated = PETSC_TRUE; 2719cb7b82ddSBarry Smith B->was_assembled = PETSC_FALSE; 2720cb7b82ddSBarry Smith B->assembled = PETSC_FALSE; 27213ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2722a23d5eceSKris Buschelman } 2723a23d5eceSKris Buschelman 27247087cfbeSBarry Smith extern PetscErrorCode MatDiagonalScaleLocal_MPIBAIJ(Mat, Vec); 27257087cfbeSBarry Smith extern PetscErrorCode MatSetHashTableFactor_MPIBAIJ(Mat, PetscReal); 27265bf65638SKris Buschelman 2727d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode MatConvert_MPIBAIJ_MPIAdj(Mat B, MatType newtype, MatReuse reuse, Mat *adj) 2728d71ae5a4SJacob Faibussowitsch { 272982094794SBarry Smith Mat_MPIBAIJ *b = (Mat_MPIBAIJ *)B->data; 273082094794SBarry Smith Mat_SeqBAIJ *d = (Mat_SeqBAIJ *)b->A->data, *o = (Mat_SeqBAIJ *)b->B->data; 273182094794SBarry Smith PetscInt M = B->rmap->n / B->rmap->bs, i, *ii, *jj, cnt, j, k, rstart = B->rmap->rstart / B->rmap->bs; 273282094794SBarry Smith const PetscInt *id = d->i, *jd = d->j, *io = o->i, *jo = o->j, *garray = b->garray; 273382094794SBarry Smith 273482094794SBarry Smith PetscFunctionBegin; 27359566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(M + 1, &ii)); 273682094794SBarry Smith ii[0] = 0; 273782094794SBarry Smith for (i = 0; i < M; i++) { 273808401ef6SPierre Jolivet PetscCheck((id[i + 1] - id[i]) >= 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Indices wrong %" PetscInt_FMT " %" PetscInt_FMT " %" PetscInt_FMT, i, id[i], id[i + 1]); 273908401ef6SPierre Jolivet PetscCheck((io[i + 1] - io[i]) >= 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Indices wrong %" PetscInt_FMT " %" PetscInt_FMT " %" PetscInt_FMT, i, io[i], io[i + 1]); 274082094794SBarry Smith ii[i + 1] = ii[i] + id[i + 1] - id[i] + io[i + 1] - io[i]; 27415ee9ba1cSJed Brown /* remove one from count of matrix has diagonal */ 27425ee9ba1cSJed Brown for (j = id[i]; j < id[i + 1]; j++) { 27439371c9d4SSatish Balay if (jd[j] == i) { 27449371c9d4SSatish Balay ii[i + 1]--; 27459371c9d4SSatish Balay break; 27469371c9d4SSatish Balay } 27475ee9ba1cSJed Brown } 274882094794SBarry Smith } 27499566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(ii[M], &jj)); 275082094794SBarry Smith cnt = 0; 275182094794SBarry Smith for (i = 0; i < M; i++) { 275282094794SBarry Smith for (j = io[i]; j < io[i + 1]; j++) { 275382094794SBarry Smith if (garray[jo[j]] > rstart) break; 275482094794SBarry Smith jj[cnt++] = garray[jo[j]]; 275582094794SBarry Smith } 275682094794SBarry Smith for (k = id[i]; k < id[i + 1]; k++) { 2757ad540459SPierre Jolivet if (jd[k] != i) jj[cnt++] = rstart + jd[k]; 275882094794SBarry Smith } 2759ad540459SPierre Jolivet for (; j < io[i + 1]; j++) jj[cnt++] = garray[jo[j]]; 276082094794SBarry Smith } 27619566063dSJacob Faibussowitsch PetscCall(MatCreateMPIAdj(PetscObjectComm((PetscObject)B), M, B->cmap->N / B->rmap->bs, ii, jj, NULL, adj)); 27623ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 276382094794SBarry Smith } 276482094794SBarry Smith 2765c6db04a5SJed Brown #include <../src/mat/impls/aij/mpi/mpiaij.h> 276662471d69SBarry Smith 2767cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_SeqBAIJ_SeqAIJ(Mat, MatType, MatReuse, Mat *); 2768b2573a8aSBarry Smith 2769d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode MatConvert_MPIBAIJ_MPIAIJ(Mat A, MatType newtype, MatReuse reuse, Mat *newmat) 2770d71ae5a4SJacob Faibussowitsch { 277162471d69SBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 277285a69837SSatish Balay Mat_MPIAIJ *b; 27735f80ce2aSJacob Faibussowitsch Mat B; 277462471d69SBarry Smith 277562471d69SBarry Smith PetscFunctionBegin; 27765f80ce2aSJacob Faibussowitsch PetscCheck(A->assembled, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Matrix must be assembled"); 277762471d69SBarry Smith 27780f6d62edSLisandro Dalcin if (reuse == MAT_REUSE_MATRIX) { 27790f6d62edSLisandro Dalcin B = *newmat; 27800f6d62edSLisandro Dalcin } else { 27819566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)A), &B)); 27829566063dSJacob Faibussowitsch PetscCall(MatSetType(B, MATMPIAIJ)); 27839566063dSJacob Faibussowitsch PetscCall(MatSetSizes(B, A->rmap->n, A->cmap->n, A->rmap->N, A->cmap->N)); 27849566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizes(B, A->rmap->bs, A->cmap->bs)); 27859566063dSJacob Faibussowitsch PetscCall(MatSeqAIJSetPreallocation(B, 0, NULL)); 27869566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(B, 0, NULL, 0, NULL)); 27870f6d62edSLisandro Dalcin } 278862471d69SBarry Smith b = (Mat_MPIAIJ *)B->data; 278962471d69SBarry Smith 27900f6d62edSLisandro Dalcin if (reuse == MAT_REUSE_MATRIX) { 27919566063dSJacob Faibussowitsch PetscCall(MatConvert_SeqBAIJ_SeqAIJ(a->A, MATSEQAIJ, MAT_REUSE_MATRIX, &b->A)); 27929566063dSJacob Faibussowitsch PetscCall(MatConvert_SeqBAIJ_SeqAIJ(a->B, MATSEQAIJ, MAT_REUSE_MATRIX, &b->B)); 27930f6d62edSLisandro Dalcin } else { 27947c612885SStefano Zampini PetscInt *garray = a->garray; 27957c612885SStefano Zampini Mat_SeqAIJ *bB; 27967c612885SStefano Zampini PetscInt bs, nnz; 27979566063dSJacob Faibussowitsch PetscCall(MatDestroy(&b->A)); 27989566063dSJacob Faibussowitsch PetscCall(MatDestroy(&b->B)); 27997c612885SStefano Zampini /* just clear out the data structure */ 2800eb14dd14SAlex Lindsay PetscCall(MatDisAssemble_MPIAIJ(B, PETSC_FALSE)); 28019566063dSJacob Faibussowitsch PetscCall(MatConvert_SeqBAIJ_SeqAIJ(a->A, MATSEQAIJ, MAT_INITIAL_MATRIX, &b->A)); 28029566063dSJacob Faibussowitsch PetscCall(MatConvert_SeqBAIJ_SeqAIJ(a->B, MATSEQAIJ, MAT_INITIAL_MATRIX, &b->B)); 28037c612885SStefano Zampini 28047c612885SStefano Zampini /* Global numbering for b->B columns */ 28057c612885SStefano Zampini bB = (Mat_SeqAIJ *)b->B->data; 28067c612885SStefano Zampini bs = A->rmap->bs; 28077c612885SStefano Zampini nnz = bB->i[A->rmap->n]; 28087c612885SStefano Zampini for (PetscInt k = 0; k < nnz; k++) { 28097c612885SStefano Zampini PetscInt bj = bB->j[k] / bs; 28107c612885SStefano Zampini PetscInt br = bB->j[k] % bs; 28117c612885SStefano Zampini bB->j[k] = garray[bj] * bs + br; 28127c612885SStefano Zampini } 28130f6d62edSLisandro Dalcin } 28149566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY)); 28159566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY)); 28160f6d62edSLisandro Dalcin 2817511c6705SHong Zhang if (reuse == MAT_INPLACE_MATRIX) { 28189566063dSJacob Faibussowitsch PetscCall(MatHeaderReplace(A, &B)); 281962471d69SBarry Smith } else { 282062471d69SBarry Smith *newmat = B; 282162471d69SBarry Smith } 28223ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 282362471d69SBarry Smith } 282462471d69SBarry Smith 28250bad9183SKris Buschelman /*MC 2826fafad747SKris Buschelman MATMPIBAIJ - MATMPIBAIJ = "mpibaij" - A matrix type to be used for distributed block sparse matrices. 28270bad9183SKris Buschelman 28280bad9183SKris Buschelman Options Database Keys: 282911a5261eSBarry Smith + -mat_type mpibaij - sets the matrix type to `MATMPIBAIJ` during a call to `MatSetFromOptions()` 28308c07d4e3SBarry Smith . -mat_block_size <bs> - set the blocksize used to store the matrix 28316679dcc1SBarry Smith . -mat_baij_mult_version version - indicate the version of the matrix-vector product to use (0 often indicates using BLAS) 283267b8a455SSatish Balay - -mat_use_hash_table <fact> - set hash table factor 28330bad9183SKris Buschelman 28340bad9183SKris Buschelman Level: beginner 28350cd7f59aSBarry Smith 283611a5261eSBarry Smith Note: 28375e0ad47dSPierre Jolivet `MatSetOption(A, MAT_STRUCTURE_ONLY, PETSC_TRUE)` may be called for this matrix type. In this no 283811a5261eSBarry Smith space is allocated for the nonzero entries and any entries passed with `MatSetValues()` are ignored 28390bad9183SKris Buschelman 28405e0ad47dSPierre Jolivet .seealso: `Mat`, `MATBAIJ`, `MATSEQBAIJ`, `MatCreateBAIJ` 28410bad9183SKris Buschelman M*/ 28420bad9183SKris Buschelman 2843cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIBAIJ_MPIBSTRM(Mat, MatType, MatReuse, Mat *); 2844c0cdd4a1SDahai Guo 2845d71ae5a4SJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatCreate_MPIBAIJ(Mat B) 2846d71ae5a4SJacob Faibussowitsch { 2847273d9f13SBarry Smith Mat_MPIBAIJ *b; 284894ae4db5SBarry Smith PetscBool flg = PETSC_FALSE; 2849273d9f13SBarry Smith 2850273d9f13SBarry Smith PetscFunctionBegin; 28514dfa11a4SJacob Faibussowitsch PetscCall(PetscNew(&b)); 285282502324SSatish Balay B->data = (void *)b; 2853aea10558SJacob Faibussowitsch B->ops[0] = MatOps_Values; 2854273d9f13SBarry Smith B->assembled = PETSC_FALSE; 2855273d9f13SBarry Smith 2856273d9f13SBarry Smith B->insertmode = NOT_SET_VALUES; 28579566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)B), &b->rank)); 28589566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)B), &b->size)); 2859273d9f13SBarry Smith 2860273d9f13SBarry Smith /* build local table of row and column ownerships */ 28619566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(b->size + 1, &b->rangebs)); 2862273d9f13SBarry Smith 2863273d9f13SBarry Smith /* build cache for off array entries formed */ 28649566063dSJacob Faibussowitsch PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)B), 1, &B->stash)); 286526fbe8dcSKarl Rupp 2866273d9f13SBarry Smith b->donotstash = PETSC_FALSE; 28670298fd71SBarry Smith b->colmap = NULL; 28680298fd71SBarry Smith b->garray = NULL; 2869273d9f13SBarry Smith b->roworiented = PETSC_TRUE; 2870273d9f13SBarry Smith 2871273d9f13SBarry Smith /* stuff used in block assembly */ 2872f4259b30SLisandro Dalcin b->barray = NULL; 2873273d9f13SBarry Smith 2874273d9f13SBarry Smith /* stuff used for matrix vector multiply */ 2875f4259b30SLisandro Dalcin b->lvec = NULL; 2876f4259b30SLisandro Dalcin b->Mvctx = NULL; 2877273d9f13SBarry Smith 2878273d9f13SBarry Smith /* stuff for MatGetRow() */ 2879f4259b30SLisandro Dalcin b->rowindices = NULL; 2880f4259b30SLisandro Dalcin b->rowvalues = NULL; 2881273d9f13SBarry Smith b->getrowactive = PETSC_FALSE; 2882273d9f13SBarry Smith 2883273d9f13SBarry Smith /* hash table stuff */ 2884f4259b30SLisandro Dalcin b->ht = NULL; 2885f4259b30SLisandro Dalcin b->hd = NULL; 2886273d9f13SBarry Smith b->ht_size = 0; 2887273d9f13SBarry Smith b->ht_flag = PETSC_FALSE; 2888273d9f13SBarry Smith b->ht_fact = 0; 2889273d9f13SBarry Smith b->ht_total_ct = 0; 2890273d9f13SBarry Smith b->ht_insert_ct = 0; 2891273d9f13SBarry Smith 28927dae84e0SHong Zhang /* stuff for MatCreateSubMatrices_MPIBAIJ_local() */ 28937a868f3eSHong Zhang b->ijonly = PETSC_FALSE; 28947a868f3eSHong Zhang 28959566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpibaij_mpiadj_C", MatConvert_MPIBAIJ_MPIAdj)); 28969566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpibaij_mpiaij_C", MatConvert_MPIBAIJ_MPIAIJ)); 28979566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpibaij_mpisbaij_C", MatConvert_MPIBAIJ_MPISBAIJ)); 28987ea3e4caSstefano_zampini #if defined(PETSC_HAVE_HYPRE) 28999566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpibaij_hypre_C", MatConvert_AIJ_HYPRE)); 29007ea3e4caSstefano_zampini #endif 29019566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatStoreValues_C", MatStoreValues_MPIBAIJ)); 29029566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatRetrieveValues_C", MatRetrieveValues_MPIBAIJ)); 29039566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMPIBAIJSetPreallocation_C", MatMPIBAIJSetPreallocation_MPIBAIJ)); 29049566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMPIBAIJSetPreallocationCSR_C", MatMPIBAIJSetPreallocationCSR_MPIBAIJ)); 29059566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatDiagonalScaleLocal_C", MatDiagonalScaleLocal_MPIBAIJ)); 29069566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatSetHashTableFactor_C", MatSetHashTableFactor_MPIBAIJ)); 29079566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpibaij_is_C", MatConvert_XAIJ_IS)); 29089566063dSJacob Faibussowitsch PetscCall(PetscObjectChangeTypeName((PetscObject)B, MATMPIBAIJ)); 290994ae4db5SBarry Smith 2910d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)B), NULL, "Options for loading MPIBAIJ matrix 1", "Mat"); 29119566063dSJacob Faibussowitsch PetscCall(PetscOptionsName("-mat_use_hash_table", "Use hash table to save time in constructing matrix", "MatSetOption", &flg)); 291294ae4db5SBarry Smith if (flg) { 291394ae4db5SBarry Smith PetscReal fact = 1.39; 29149566063dSJacob Faibussowitsch PetscCall(MatSetOption(B, MAT_USE_HASH_TABLE, PETSC_TRUE)); 29159566063dSJacob Faibussowitsch PetscCall(PetscOptionsReal("-mat_use_hash_table", "Use hash table factor", "MatMPIBAIJSetHashTableFactor", fact, &fact, NULL)); 291694ae4db5SBarry Smith if (fact <= 1.0) fact = 1.39; 29179566063dSJacob Faibussowitsch PetscCall(MatMPIBAIJSetHashTableFactor(B, fact)); 29189566063dSJacob Faibussowitsch PetscCall(PetscInfo(B, "Hash table Factor used %5.2g\n", (double)fact)); 291994ae4db5SBarry Smith } 2920d0609cedSBarry Smith PetscOptionsEnd(); 29213ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2922273d9f13SBarry Smith } 2923273d9f13SBarry Smith 29242920cce0SJacob Faibussowitsch // PetscClangLinter pragma disable: -fdoc-section-header-unknown 2925209238afSKris Buschelman /*MC 2926002d173eSKris Buschelman MATBAIJ - MATBAIJ = "baij" - A matrix type to be used for block sparse matrices. 2927209238afSKris Buschelman 292811a5261eSBarry Smith This matrix type is identical to `MATSEQBAIJ` when constructed with a single process communicator, 292911a5261eSBarry Smith and `MATMPIBAIJ` otherwise. 2930209238afSKris Buschelman 2931209238afSKris Buschelman Options Database Keys: 293211a5261eSBarry Smith . -mat_type baij - sets the matrix type to `MATBAIJ` during a call to `MatSetFromOptions()` 2933209238afSKris Buschelman 2934209238afSKris Buschelman Level: beginner 2935209238afSKris Buschelman 293667be906fSBarry Smith .seealso: `Mat`, `MatCreateBAIJ()`, `MATSEQBAIJ`, `MATMPIBAIJ`, `MatMPIBAIJSetPreallocation()`, `MatMPIBAIJSetPreallocationCSR()` 2937209238afSKris Buschelman M*/ 2938209238afSKris Buschelman 29395d83a8b1SBarry Smith /*@ 294011a5261eSBarry Smith MatMPIBAIJSetPreallocation - Allocates memory for a sparse parallel matrix in `MATMPIBAIJ` format 294167be906fSBarry Smith (block compressed row). 2942273d9f13SBarry Smith 2943c3339decSBarry Smith Collective 2944273d9f13SBarry Smith 2945273d9f13SBarry Smith Input Parameters: 29461c4f3114SJed Brown + B - the matrix 294711a5261eSBarry Smith . bs - size of block, the blocks are ALWAYS square. One can use `MatSetBlockSizes()` to set a different row and column blocksize but the row 294867be906fSBarry Smith blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with `MatCreateVecs()` 2949273d9f13SBarry Smith . d_nz - number of block nonzeros per block row in diagonal portion of local 2950273d9f13SBarry Smith submatrix (same for all local rows) 2951273d9f13SBarry Smith . d_nnz - array containing the number of block nonzeros in the various block rows 2952273d9f13SBarry Smith of the in diagonal portion of the local (possibly different for each block 295367be906fSBarry Smith row) or `NULL`. If you plan to factor the matrix you must leave room for the diagonal entry and 295495742e49SBarry Smith set it even if it is zero. 2955273d9f13SBarry Smith . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 2956273d9f13SBarry Smith submatrix (same for all local rows). 2957273d9f13SBarry Smith - o_nnz - array containing the number of nonzeros in the various block rows of the 2958273d9f13SBarry Smith off-diagonal portion of the local submatrix (possibly different for 295967be906fSBarry Smith each block row) or `NULL`. 2960273d9f13SBarry Smith 296149a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 2962273d9f13SBarry Smith 2963273d9f13SBarry Smith Options Database Keys: 29648c07d4e3SBarry Smith + -mat_block_size - size of the blocks to use 296567b8a455SSatish Balay - -mat_use_hash_table <fact> - set hash table factor 2966273d9f13SBarry Smith 296767be906fSBarry Smith Level: intermediate 296867be906fSBarry Smith 2969273d9f13SBarry Smith Notes: 297067be906fSBarry Smith For good matrix assembly performance 297167be906fSBarry Smith the user should preallocate the matrix storage by setting the parameters 297267be906fSBarry Smith `d_nz` (or `d_nnz`) and `o_nz` (or `o_nnz`). By setting these parameters accurately, 297367be906fSBarry Smith performance can be increased by more than a factor of 50. 297467be906fSBarry Smith 297511a5261eSBarry Smith If `PETSC_DECIDE` or `PETSC_DETERMINE` is used for a particular argument on one processor 2976273d9f13SBarry Smith than it must be used on all processors that share the object for that argument. 2977273d9f13SBarry Smith 2978273d9f13SBarry Smith Storage Information: 2979273d9f13SBarry Smith For a square global matrix we define each processor's diagonal portion 2980273d9f13SBarry Smith to be its local rows and the corresponding columns (a square submatrix); 2981273d9f13SBarry Smith each processor's off-diagonal portion encompasses the remainder of the 2982273d9f13SBarry Smith local matrix (a rectangular submatrix). 2983273d9f13SBarry Smith 2984273d9f13SBarry Smith The user can specify preallocated storage for the diagonal part of 298567be906fSBarry Smith the local submatrix with either `d_nz` or `d_nnz` (not both). Set 298667be906fSBarry Smith `d_nz` = `PETSC_DEFAULT` and `d_nnz` = `NULL` for PETSc to control dynamic 2987273d9f13SBarry Smith memory allocation. Likewise, specify preallocated storage for the 298867be906fSBarry Smith off-diagonal part of the local submatrix with `o_nz` or `o_nnz` (not both). 2989273d9f13SBarry Smith 2990273d9f13SBarry Smith Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 2991273d9f13SBarry Smith the figure below we depict these three local rows and all columns (0-11). 2992273d9f13SBarry Smith 2993273d9f13SBarry Smith .vb 2994273d9f13SBarry Smith 0 1 2 3 4 5 6 7 8 9 10 11 2995a4b1a0f6SJed Brown -------------------------- 2996273d9f13SBarry Smith row 3 |o o o d d d o o o o o o 2997273d9f13SBarry Smith row 4 |o o o d d d o o o o o o 2998273d9f13SBarry Smith row 5 |o o o d d d o o o o o o 2999a4b1a0f6SJed Brown -------------------------- 3000273d9f13SBarry Smith .ve 3001273d9f13SBarry Smith 3002273d9f13SBarry Smith Thus, any entries in the d locations are stored in the d (diagonal) 3003273d9f13SBarry Smith submatrix, and any entries in the o locations are stored in the 3004273d9f13SBarry Smith o (off-diagonal) submatrix. Note that the d and the o submatrices are 300511a5261eSBarry Smith stored simply in the `MATSEQBAIJ` format for compressed row storage. 3006273d9f13SBarry Smith 300767be906fSBarry Smith Now `d_nz` should indicate the number of block nonzeros per row in the d matrix, 300867be906fSBarry Smith and `o_nz` should indicate the number of block nonzeros per row in the o matrix. 3009273d9f13SBarry Smith In general, for PDE problems in which most nonzeros are near the diagonal, 301020f4b53cSBarry Smith one expects `d_nz` >> `o_nz`. 3011273d9f13SBarry Smith 301211a5261eSBarry Smith You can call `MatGetInfo()` to get information on how effective the preallocation was; 3013aa95bbe8SBarry Smith for example the fields mallocs,nz_allocated,nz_used,nz_unneeded; 301467be906fSBarry Smith You can also run with the option `-info` and look for messages with the string 3015aa95bbe8SBarry Smith malloc in them to see if additional memory allocation was needed. 3016aa95bbe8SBarry Smith 301767be906fSBarry Smith .seealso: `Mat`, `MATMPIBAIJ`, `MatCreate()`, `MatCreateSeqBAIJ()`, `MatSetValues()`, `MatCreateBAIJ()`, `MatMPIBAIJSetPreallocationCSR()`, `PetscSplitOwnership()` 3018273d9f13SBarry Smith @*/ 3019d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIBAIJSetPreallocation(Mat B, PetscInt bs, PetscInt d_nz, const PetscInt d_nnz[], PetscInt o_nz, const PetscInt o_nnz[]) 3020d71ae5a4SJacob Faibussowitsch { 3021273d9f13SBarry Smith PetscFunctionBegin; 30226ba663aaSJed Brown PetscValidHeaderSpecific(B, MAT_CLASSID, 1); 30236ba663aaSJed Brown PetscValidType(B, 1); 30246ba663aaSJed Brown PetscValidLogicalCollectiveInt(B, bs, 2); 3025cac4c232SBarry Smith PetscTryMethod(B, "MatMPIBAIJSetPreallocation_C", (Mat, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[]), (B, bs, d_nz, d_nnz, o_nz, o_nnz)); 30263ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3027273d9f13SBarry Smith } 3028273d9f13SBarry Smith 30292920cce0SJacob Faibussowitsch // PetscClangLinter pragma disable: -fdoc-section-header-unknown 30305d83a8b1SBarry Smith /*@ 303111a5261eSBarry Smith MatCreateBAIJ - Creates a sparse parallel matrix in `MATBAIJ` format 303267be906fSBarry Smith (block compressed row). 303379bdfe76SSatish Balay 3034d083f849SBarry Smith Collective 3035db81eaa0SLois Curfman McInnes 303679bdfe76SSatish Balay Input Parameters: 3037db81eaa0SLois Curfman McInnes + comm - MPI communicator 303811a5261eSBarry Smith . bs - size of block, the blocks are ALWAYS square. One can use `MatSetBlockSizes()` to set a different row and column blocksize but the row 303911a5261eSBarry Smith blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with `MatCreateVecs()` 304011a5261eSBarry Smith . m - number of local rows (or `PETSC_DECIDE` to have calculated if M is given) 304192e8d321SLois Curfman McInnes This value should be the same as the local size used in creating the 304292e8d321SLois Curfman McInnes y vector for the matrix-vector product y = Ax. 304311a5261eSBarry Smith . n - number of local columns (or `PETSC_DECIDE` to have calculated if N is given) 304492e8d321SLois Curfman McInnes This value should be the same as the local size used in creating the 304592e8d321SLois Curfman McInnes x vector for the matrix-vector product y = Ax. 304611a5261eSBarry Smith . M - number of global rows (or `PETSC_DETERMINE` to have calculated if m is given) 304711a5261eSBarry Smith . N - number of global columns (or `PETSC_DETERMINE` to have calculated if n is given) 304847a75d0bSBarry Smith . d_nz - number of nonzero blocks per block row in diagonal portion of local 304979bdfe76SSatish Balay submatrix (same for all local rows) 305047a75d0bSBarry Smith . d_nnz - array containing the number of nonzero blocks in the various block rows 305192e8d321SLois Curfman McInnes of the in diagonal portion of the local (possibly different for each block 30520298fd71SBarry Smith row) or NULL. If you plan to factor the matrix you must leave room for the diagonal entry 305395742e49SBarry Smith and set it even if it is zero. 305447a75d0bSBarry Smith . o_nz - number of nonzero blocks per block row in the off-diagonal portion of local 305579bdfe76SSatish Balay submatrix (same for all local rows). 305647a75d0bSBarry Smith - o_nnz - array containing the number of nonzero blocks in the various block rows of the 305792e8d321SLois Curfman McInnes off-diagonal portion of the local submatrix (possibly different for 30580298fd71SBarry Smith each block row) or NULL. 305979bdfe76SSatish Balay 306079bdfe76SSatish Balay Output Parameter: 306179bdfe76SSatish Balay . A - the matrix 306279bdfe76SSatish Balay 3063db81eaa0SLois Curfman McInnes Options Database Keys: 30648c07d4e3SBarry Smith + -mat_block_size - size of the blocks to use 306567b8a455SSatish Balay - -mat_use_hash_table <fact> - set hash table factor 30663ffaccefSLois Curfman McInnes 306767be906fSBarry Smith Level: intermediate 306867be906fSBarry Smith 306967be906fSBarry Smith Notes: 307077433607SBarry Smith It is recommended that one use `MatCreateFromOptions()` or the `MatCreate()`, `MatSetType()` and/or `MatSetFromOptions()`, 307177433607SBarry Smith MatXXXXSetPreallocation() paradigm instead of this routine directly. 307277433607SBarry Smith [MatXXXXSetPreallocation() is, for example, `MatSeqBAIJSetPreallocation()`] 307377433607SBarry Smith 307467be906fSBarry Smith For good matrix assembly performance 307567be906fSBarry Smith the user should preallocate the matrix storage by setting the parameters 307667be906fSBarry Smith `d_nz` (or `d_nnz`) and `o_nz` (or `o_nnz`). By setting these parameters accurately, 307767be906fSBarry Smith performance can be increased by more than a factor of 50. 307867be906fSBarry Smith 307949a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 308049a6f317SBarry Smith 308147a75d0bSBarry Smith A nonzero block is any block that as 1 or more nonzeros in it 308247a75d0bSBarry Smith 308379bdfe76SSatish Balay The user MUST specify either the local or global matrix dimensions 308479bdfe76SSatish Balay (possibly both). 308579bdfe76SSatish Balay 308611a5261eSBarry Smith If `PETSC_DECIDE` or `PETSC_DETERMINE` is used for a particular argument on one processor 3087be79a94dSBarry Smith than it must be used on all processors that share the object for that argument. 3088be79a94dSBarry Smith 3089727bdf9bSBarry Smith If `m` and `n` are not `PETSC_DECIDE`, then the values determine the `PetscLayout` of the matrix and the ranges returned by 3090727bdf9bSBarry Smith `MatGetOwnershipRange()`, `MatGetOwnershipRanges()`, `MatGetOwnershipRangeColumn()`, and `MatGetOwnershipRangesColumn()`. 3091727bdf9bSBarry Smith 309279bdfe76SSatish Balay Storage Information: 309379bdfe76SSatish Balay For a square global matrix we define each processor's diagonal portion 309479bdfe76SSatish Balay to be its local rows and the corresponding columns (a square submatrix); 309579bdfe76SSatish Balay each processor's off-diagonal portion encompasses the remainder of the 309679bdfe76SSatish Balay local matrix (a rectangular submatrix). 309779bdfe76SSatish Balay 309879bdfe76SSatish Balay The user can specify preallocated storage for the diagonal part of 309979bdfe76SSatish Balay the local submatrix with either d_nz or d_nnz (not both). Set 310067be906fSBarry Smith `d_nz` = `PETSC_DEFAULT` and `d_nnz` = `NULL` for PETSc to control dynamic 310179bdfe76SSatish Balay memory allocation. Likewise, specify preallocated storage for the 310267be906fSBarry Smith off-diagonal part of the local submatrix with `o_nz` or `o_nnz` (not both). 310379bdfe76SSatish Balay 310479bdfe76SSatish Balay Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 310579bdfe76SSatish Balay the figure below we depict these three local rows and all columns (0-11). 310679bdfe76SSatish Balay 3107db81eaa0SLois Curfman McInnes .vb 3108db81eaa0SLois Curfman McInnes 0 1 2 3 4 5 6 7 8 9 10 11 3109a4b1a0f6SJed Brown -------------------------- 3110db81eaa0SLois Curfman McInnes row 3 |o o o d d d o o o o o o 3111db81eaa0SLois Curfman McInnes row 4 |o o o d d d o o o o o o 3112db81eaa0SLois Curfman McInnes row 5 |o o o d d d o o o o o o 3113a4b1a0f6SJed Brown -------------------------- 3114db81eaa0SLois Curfman McInnes .ve 311579bdfe76SSatish Balay 311679bdfe76SSatish Balay Thus, any entries in the d locations are stored in the d (diagonal) 311779bdfe76SSatish Balay submatrix, and any entries in the o locations are stored in the 311879bdfe76SSatish Balay o (off-diagonal) submatrix. Note that the d and the o submatrices are 311911a5261eSBarry Smith stored simply in the `MATSEQBAIJ` format for compressed row storage. 312079bdfe76SSatish Balay 312167be906fSBarry Smith Now `d_nz` should indicate the number of block nonzeros per row in the d matrix, 312267be906fSBarry Smith and `o_nz` should indicate the number of block nonzeros per row in the o matrix. 312379bdfe76SSatish Balay In general, for PDE problems in which most nonzeros are near the diagonal, 312420f4b53cSBarry Smith one expects `d_nz` >> `o_nz`. 312579bdfe76SSatish Balay 3126727bdf9bSBarry Smith .seealso: `Mat`, `MatCreate()`, `MatCreateSeqBAIJ()`, `MatSetValues()`, `MatMPIBAIJSetPreallocation()`, `MatMPIBAIJSetPreallocationCSR()`, 3127727bdf9bSBarry Smith `MatGetOwnershipRange()`, `MatGetOwnershipRanges()`, `MatGetOwnershipRangeColumn()`, `MatGetOwnershipRangesColumn()`, `PetscLayout` 312879bdfe76SSatish Balay @*/ 3129d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateBAIJ(MPI_Comm comm, PetscInt bs, PetscInt m, PetscInt n, PetscInt M, PetscInt N, PetscInt d_nz, const PetscInt d_nnz[], PetscInt o_nz, const PetscInt o_nnz[], Mat *A) 3130d71ae5a4SJacob Faibussowitsch { 3131b24ad042SBarry Smith PetscMPIInt size; 313279bdfe76SSatish Balay 3133d64ed03dSBarry Smith PetscFunctionBegin; 31349566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, A)); 31359566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*A, m, n, M, N)); 31369566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 3137273d9f13SBarry Smith if (size > 1) { 31389566063dSJacob Faibussowitsch PetscCall(MatSetType(*A, MATMPIBAIJ)); 31399566063dSJacob Faibussowitsch PetscCall(MatMPIBAIJSetPreallocation(*A, bs, d_nz, d_nnz, o_nz, o_nnz)); 3140273d9f13SBarry Smith } else { 31419566063dSJacob Faibussowitsch PetscCall(MatSetType(*A, MATSEQBAIJ)); 31429566063dSJacob Faibussowitsch PetscCall(MatSeqBAIJSetPreallocation(*A, bs, d_nz, d_nnz)); 31433914022bSBarry Smith } 31443ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 314579bdfe76SSatish Balay } 3146026e39d0SSatish Balay 3147d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatDuplicate_MPIBAIJ(Mat matin, MatDuplicateOption cpvalues, Mat *newmat) 3148d71ae5a4SJacob Faibussowitsch { 31490ac07820SSatish Balay Mat mat; 31500ac07820SSatish Balay Mat_MPIBAIJ *a, *oldmat = (Mat_MPIBAIJ *)matin->data; 3151b24ad042SBarry Smith PetscInt len = 0; 31520ac07820SSatish Balay 3153d64ed03dSBarry Smith PetscFunctionBegin; 3154f4259b30SLisandro Dalcin *newmat = NULL; 31559566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)matin), &mat)); 31569566063dSJacob Faibussowitsch PetscCall(MatSetSizes(mat, matin->rmap->n, matin->cmap->n, matin->rmap->N, matin->cmap->N)); 31579566063dSJacob Faibussowitsch PetscCall(MatSetType(mat, ((PetscObject)matin)->type_name)); 31587fff6886SHong Zhang 3159420957c1SBarry Smith PetscCall(PetscLayoutReference(matin->rmap, &mat->rmap)); 3160420957c1SBarry Smith PetscCall(PetscLayoutReference(matin->cmap, &mat->cmap)); 3161420957c1SBarry Smith if (matin->hash_active) { 3162420957c1SBarry Smith PetscCall(MatSetUp(mat)); 3163420957c1SBarry Smith } else { 3164d5f3da31SBarry Smith mat->factortype = matin->factortype; 3165273d9f13SBarry Smith mat->preallocated = PETSC_TRUE; 31660ac07820SSatish Balay mat->assembled = PETSC_TRUE; 31677fff6886SHong Zhang mat->insertmode = NOT_SET_VALUES; 31687fff6886SHong Zhang 3169273d9f13SBarry Smith a = (Mat_MPIBAIJ *)mat->data; 3170d0f46423SBarry Smith mat->rmap->bs = matin->rmap->bs; 31710ac07820SSatish Balay a->bs2 = oldmat->bs2; 31720ac07820SSatish Balay a->mbs = oldmat->mbs; 31730ac07820SSatish Balay a->nbs = oldmat->nbs; 31740ac07820SSatish Balay a->Mbs = oldmat->Mbs; 31750ac07820SSatish Balay a->Nbs = oldmat->Nbs; 31760ac07820SSatish Balay 31770ac07820SSatish Balay a->size = oldmat->size; 31780ac07820SSatish Balay a->rank = oldmat->rank; 3179aef5e8e0SSatish Balay a->donotstash = oldmat->donotstash; 3180aef5e8e0SSatish Balay a->roworiented = oldmat->roworiented; 3181f4259b30SLisandro Dalcin a->rowindices = NULL; 3182f4259b30SLisandro Dalcin a->rowvalues = NULL; 31830ac07820SSatish Balay a->getrowactive = PETSC_FALSE; 3184f4259b30SLisandro Dalcin a->barray = NULL; 3185899cda47SBarry Smith a->rstartbs = oldmat->rstartbs; 3186899cda47SBarry Smith a->rendbs = oldmat->rendbs; 3187899cda47SBarry Smith a->cstartbs = oldmat->cstartbs; 3188899cda47SBarry Smith a->cendbs = oldmat->cendbs; 31890ac07820SSatish Balay 3190133cdb44SSatish Balay /* hash table stuff */ 3191f4259b30SLisandro Dalcin a->ht = NULL; 3192f4259b30SLisandro Dalcin a->hd = NULL; 3193133cdb44SSatish Balay a->ht_size = 0; 3194133cdb44SSatish Balay a->ht_flag = oldmat->ht_flag; 319525fdafccSSatish Balay a->ht_fact = oldmat->ht_fact; 3196133cdb44SSatish Balay a->ht_total_ct = 0; 3197133cdb44SSatish Balay a->ht_insert_ct = 0; 3198133cdb44SSatish Balay 31999566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(a->rangebs, oldmat->rangebs, a->size + 1)); 32000ac07820SSatish Balay if (oldmat->colmap) { 3201aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 3202eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIDuplicate(oldmat->colmap, &a->colmap)); 320348e59246SSatish Balay #else 32049566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(a->Nbs, &a->colmap)); 32059566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(a->colmap, oldmat->colmap, a->Nbs)); 320648e59246SSatish Balay #endif 3207f4259b30SLisandro Dalcin } else a->colmap = NULL; 32084beb1cfeSHong Zhang 3209f4f49eeaSPierre Jolivet if (oldmat->garray && (len = ((Mat_SeqBAIJ *)oldmat->B->data)->nbs)) { 32109566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(len, &a->garray)); 32119566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(a->garray, oldmat->garray, len)); 3212f4259b30SLisandro Dalcin } else a->garray = NULL; 32130ac07820SSatish Balay 32149566063dSJacob Faibussowitsch PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)matin), matin->rmap->bs, &mat->bstash)); 32159566063dSJacob Faibussowitsch PetscCall(VecDuplicate(oldmat->lvec, &a->lvec)); 32169566063dSJacob Faibussowitsch PetscCall(VecScatterCopy(oldmat->Mvctx, &a->Mvctx)); 32177fff6886SHong Zhang 32189566063dSJacob Faibussowitsch PetscCall(MatDuplicate(oldmat->A, cpvalues, &a->A)); 32199566063dSJacob Faibussowitsch PetscCall(MatDuplicate(oldmat->B, cpvalues, &a->B)); 3220420957c1SBarry Smith } 32219566063dSJacob Faibussowitsch PetscCall(PetscFunctionListDuplicate(((PetscObject)matin)->qlist, &((PetscObject)mat)->qlist)); 32220ac07820SSatish Balay *newmat = mat; 32233ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 32240ac07820SSatish Balay } 322557b952d6SSatish Balay 3226618cc2edSLisandro Dalcin /* Used for both MPIBAIJ and MPISBAIJ matrices */ 3227d71ae5a4SJacob Faibussowitsch PetscErrorCode MatLoad_MPIBAIJ_Binary(Mat mat, PetscViewer viewer) 3228d71ae5a4SJacob Faibussowitsch { 3229b51a4376SLisandro Dalcin PetscInt header[4], M, N, nz, bs, m, n, mbs, nbs, rows, cols, sum, i, j, k; 3230b51a4376SLisandro Dalcin PetscInt *rowidxs, *colidxs, rs, cs, ce; 3231b51a4376SLisandro Dalcin PetscScalar *matvals; 3232b51a4376SLisandro Dalcin 3233b51a4376SLisandro Dalcin PetscFunctionBegin; 32349566063dSJacob Faibussowitsch PetscCall(PetscViewerSetUp(viewer)); 3235b51a4376SLisandro Dalcin 3236b51a4376SLisandro Dalcin /* read in matrix header */ 32379566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryRead(viewer, header, 4, NULL, PETSC_INT)); 32385f80ce2aSJacob Faibussowitsch PetscCheck(header[0] == MAT_FILE_CLASSID, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Not a matrix object in file"); 32399371c9d4SSatish Balay M = header[1]; 32409371c9d4SSatish Balay N = header[2]; 32419371c9d4SSatish Balay nz = header[3]; 32425f80ce2aSJacob Faibussowitsch PetscCheck(M >= 0, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Matrix row size (%" PetscInt_FMT ") in file is negative", M); 32435f80ce2aSJacob Faibussowitsch PetscCheck(N >= 0, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Matrix column size (%" PetscInt_FMT ") in file is negative", N); 32445f80ce2aSJacob Faibussowitsch PetscCheck(nz >= 0, PETSC_COMM_SELF, PETSC_ERR_FILE_UNEXPECTED, "Matrix stored in special format on disk, cannot load as MPIBAIJ"); 3245b51a4376SLisandro Dalcin 3246b51a4376SLisandro Dalcin /* set block sizes from the viewer's .info file */ 32479566063dSJacob Faibussowitsch PetscCall(MatLoad_Binary_BlockSizes(mat, viewer)); 3248618cc2edSLisandro Dalcin /* set local sizes if not set already */ 3249618cc2edSLisandro Dalcin if (mat->rmap->n < 0 && M == N) mat->rmap->n = mat->cmap->n; 3250618cc2edSLisandro Dalcin if (mat->cmap->n < 0 && M == N) mat->cmap->n = mat->rmap->n; 3251b51a4376SLisandro Dalcin /* set global sizes if not set already */ 3252b51a4376SLisandro Dalcin if (mat->rmap->N < 0) mat->rmap->N = M; 3253b51a4376SLisandro Dalcin if (mat->cmap->N < 0) mat->cmap->N = N; 32549566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(mat->rmap)); 32559566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(mat->cmap)); 3256b51a4376SLisandro Dalcin 3257b51a4376SLisandro Dalcin /* check if the matrix sizes are correct */ 32589566063dSJacob Faibussowitsch PetscCall(MatGetSize(mat, &rows, &cols)); 32595f80ce2aSJacob Faibussowitsch PetscCheck(M == rows && N == cols, PETSC_COMM_SELF, PETSC_ERR_FILE_UNEXPECTED, "Matrix in file of different sizes (%" PetscInt_FMT ", %" PetscInt_FMT ") than the input matrix (%" PetscInt_FMT ", %" PetscInt_FMT ")", M, N, rows, cols); 32609566063dSJacob Faibussowitsch PetscCall(MatGetBlockSize(mat, &bs)); 32619566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(mat, &m, &n)); 32629566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetRange(mat->rmap, &rs, NULL)); 32639566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetRange(mat->cmap, &cs, &ce)); 32649371c9d4SSatish Balay mbs = m / bs; 32659371c9d4SSatish Balay nbs = n / bs; 3266b51a4376SLisandro Dalcin 3267b51a4376SLisandro Dalcin /* read in row lengths and build row indices */ 32689566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m + 1, &rowidxs)); 32699566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryReadAll(viewer, rowidxs + 1, m, PETSC_DECIDE, M, PETSC_INT)); 32709371c9d4SSatish Balay rowidxs[0] = 0; 32719371c9d4SSatish Balay for (i = 0; i < m; i++) rowidxs[i + 1] += rowidxs[i]; 3272462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&rowidxs[m], &sum, 1, MPIU_INT, MPI_SUM, PetscObjectComm((PetscObject)viewer))); 32735f80ce2aSJacob Faibussowitsch PetscCheck(sum == nz, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Inconsistent matrix data in file: nonzeros = %" PetscInt_FMT ", sum-row-lengths = %" PetscInt_FMT, nz, sum); 3274b51a4376SLisandro Dalcin 3275b51a4376SLisandro Dalcin /* read in column indices and matrix values */ 32769566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(rowidxs[m], &colidxs, rowidxs[m], &matvals)); 32779566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryReadAll(viewer, colidxs, rowidxs[m], PETSC_DETERMINE, PETSC_DETERMINE, PETSC_INT)); 32789566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryReadAll(viewer, matvals, rowidxs[m], PETSC_DETERMINE, PETSC_DETERMINE, PETSC_SCALAR)); 3279b51a4376SLisandro Dalcin 3280b51a4376SLisandro Dalcin { /* preallocate matrix storage */ 3281b51a4376SLisandro Dalcin PetscBT bt; /* helper bit set to count diagonal nonzeros */ 3282b51a4376SLisandro Dalcin PetscHSetI ht; /* helper hash set to count off-diagonal nonzeros */ 3283618cc2edSLisandro Dalcin PetscBool sbaij, done; 3284b51a4376SLisandro Dalcin PetscInt *d_nnz, *o_nnz; 3285b51a4376SLisandro Dalcin 32869566063dSJacob Faibussowitsch PetscCall(PetscBTCreate(nbs, &bt)); 32879566063dSJacob Faibussowitsch PetscCall(PetscHSetICreate(&ht)); 32889566063dSJacob Faibussowitsch PetscCall(PetscCalloc2(mbs, &d_nnz, mbs, &o_nnz)); 32899566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)mat, MATMPISBAIJ, &sbaij)); 3290b51a4376SLisandro Dalcin for (i = 0; i < mbs; i++) { 32919566063dSJacob Faibussowitsch PetscCall(PetscBTMemzero(nbs, bt)); 32929566063dSJacob Faibussowitsch PetscCall(PetscHSetIClear(ht)); 3293618cc2edSLisandro Dalcin for (k = 0; k < bs; k++) { 3294618cc2edSLisandro Dalcin PetscInt row = bs * i + k; 3295618cc2edSLisandro Dalcin for (j = rowidxs[row]; j < rowidxs[row + 1]; j++) { 3296618cc2edSLisandro Dalcin PetscInt col = colidxs[j]; 3297618cc2edSLisandro Dalcin if (!sbaij || col >= row) { 3298618cc2edSLisandro Dalcin if (col >= cs && col < ce) { 3299618cc2edSLisandro Dalcin if (!PetscBTLookupSet(bt, (col - cs) / bs)) d_nnz[i]++; 3300b51a4376SLisandro Dalcin } else { 33019566063dSJacob Faibussowitsch PetscCall(PetscHSetIQueryAdd(ht, col / bs, &done)); 3302b51a4376SLisandro Dalcin if (done) o_nnz[i]++; 3303b51a4376SLisandro Dalcin } 3304b51a4376SLisandro Dalcin } 3305618cc2edSLisandro Dalcin } 3306618cc2edSLisandro Dalcin } 3307618cc2edSLisandro Dalcin } 33089566063dSJacob Faibussowitsch PetscCall(PetscBTDestroy(&bt)); 33099566063dSJacob Faibussowitsch PetscCall(PetscHSetIDestroy(&ht)); 33109566063dSJacob Faibussowitsch PetscCall(MatMPIBAIJSetPreallocation(mat, bs, 0, d_nnz, 0, o_nnz)); 33119566063dSJacob Faibussowitsch PetscCall(MatMPISBAIJSetPreallocation(mat, bs, 0, d_nnz, 0, o_nnz)); 33129566063dSJacob Faibussowitsch PetscCall(PetscFree2(d_nnz, o_nnz)); 3313b51a4376SLisandro Dalcin } 3314b51a4376SLisandro Dalcin 3315b51a4376SLisandro Dalcin /* store matrix values */ 3316b51a4376SLisandro Dalcin for (i = 0; i < m; i++) { 3317b51a4376SLisandro Dalcin PetscInt row = rs + i, s = rowidxs[i], e = rowidxs[i + 1]; 33189927e4dfSBarry Smith PetscUseTypeMethod(mat, setvalues, 1, &row, e - s, colidxs + s, matvals + s, INSERT_VALUES); 3319b51a4376SLisandro Dalcin } 3320b51a4376SLisandro Dalcin 33219566063dSJacob Faibussowitsch PetscCall(PetscFree(rowidxs)); 33229566063dSJacob Faibussowitsch PetscCall(PetscFree2(colidxs, matvals)); 33239566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(mat, MAT_FINAL_ASSEMBLY)); 33249566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(mat, MAT_FINAL_ASSEMBLY)); 33253ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3326b51a4376SLisandro Dalcin } 3327b51a4376SLisandro Dalcin 3328d71ae5a4SJacob Faibussowitsch PetscErrorCode MatLoad_MPIBAIJ(Mat mat, PetscViewer viewer) 3329d71ae5a4SJacob Faibussowitsch { 33307f489da9SVaclav Hapla PetscBool isbinary; 33314683f7a4SShri Abhyankar 33324683f7a4SShri Abhyankar PetscFunctionBegin; 33339566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary)); 33345f80ce2aSJacob Faibussowitsch PetscCheck(isbinary, PetscObjectComm((PetscObject)viewer), PETSC_ERR_SUP, "Viewer type %s not yet supported for reading %s matrices", ((PetscObject)viewer)->type_name, ((PetscObject)mat)->type_name); 33359566063dSJacob Faibussowitsch PetscCall(MatLoad_MPIBAIJ_Binary(mat, viewer)); 33363ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 33374683f7a4SShri Abhyankar } 33384683f7a4SShri Abhyankar 3339133cdb44SSatish Balay /*@ 334011a5261eSBarry Smith MatMPIBAIJSetHashTableFactor - Sets the factor required to compute the size of the matrices hash table 3341133cdb44SSatish Balay 3342133cdb44SSatish Balay Input Parameters: 3343a2b725a8SWilliam Gropp + mat - the matrix 3344a2b725a8SWilliam Gropp - fact - factor 3345133cdb44SSatish Balay 334611a5261eSBarry Smith Options Database Key: 334711a5261eSBarry Smith . -mat_use_hash_table <fact> - provide the factor 3348fee21e36SBarry Smith 33498c890885SBarry Smith Level: advanced 33508c890885SBarry Smith 335167be906fSBarry Smith .seealso: `Mat`, `MATMPIBAIJ`, `MatSetOption()` 3352133cdb44SSatish Balay @*/ 3353d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIBAIJSetHashTableFactor(Mat mat, PetscReal fact) 3354d71ae5a4SJacob Faibussowitsch { 33555bf65638SKris Buschelman PetscFunctionBegin; 3356cac4c232SBarry Smith PetscTryMethod(mat, "MatSetHashTableFactor_C", (Mat, PetscReal), (mat, fact)); 33573ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 33585bf65638SKris Buschelman } 33595bf65638SKris Buschelman 3360d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetHashTableFactor_MPIBAIJ(Mat mat, PetscReal fact) 3361d71ae5a4SJacob Faibussowitsch { 336225fdafccSSatish Balay Mat_MPIBAIJ *baij; 3363133cdb44SSatish Balay 3364133cdb44SSatish Balay PetscFunctionBegin; 3365133cdb44SSatish Balay baij = (Mat_MPIBAIJ *)mat->data; 3366133cdb44SSatish Balay baij->ht_fact = fact; 33673ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3368133cdb44SSatish Balay } 3369f2a5309cSSatish Balay 3370d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIBAIJGetSeqBAIJ(Mat A, Mat *Ad, Mat *Ao, const PetscInt *colmap[]) 3371d71ae5a4SJacob Faibussowitsch { 3372f2a5309cSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 3373ab4d48faSStefano Zampini PetscBool flg; 33745fd66863SKarl Rupp 3375f2a5309cSSatish Balay PetscFunctionBegin; 33769566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)A, MATMPIBAIJ, &flg)); 33775f80ce2aSJacob Faibussowitsch PetscCheck(flg, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "This function requires a MATMPIBAIJ matrix as input"); 337821e72a00SBarry Smith if (Ad) *Ad = a->A; 337921e72a00SBarry Smith if (Ao) *Ao = a->B; 338021e72a00SBarry Smith if (colmap) *colmap = a->garray; 33813ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3382f2a5309cSSatish Balay } 338385535b8eSBarry Smith 338485535b8eSBarry Smith /* 338585535b8eSBarry Smith Special version for direct calls from Fortran (to eliminate two function call overheads 338685535b8eSBarry Smith */ 338785535b8eSBarry Smith #if defined(PETSC_HAVE_FORTRAN_CAPS) 338885535b8eSBarry Smith #define matmpibaijsetvaluesblocked_ MATMPIBAIJSETVALUESBLOCKED 338985535b8eSBarry Smith #elif !defined(PETSC_HAVE_FORTRAN_UNDERSCORE) 339085535b8eSBarry Smith #define matmpibaijsetvaluesblocked_ matmpibaijsetvaluesblocked 339185535b8eSBarry Smith #endif 339285535b8eSBarry Smith 33932920cce0SJacob Faibussowitsch // PetscClangLinter pragma disable: -fdoc-synopsis-matching-symbol-name 339485535b8eSBarry Smith /*@C 339511a5261eSBarry Smith MatMPIBAIJSetValuesBlocked - Direct Fortran call to replace call to `MatSetValuesBlocked()` 339685535b8eSBarry Smith 3397c3339decSBarry Smith Collective 339885535b8eSBarry Smith 339985535b8eSBarry Smith Input Parameters: 3400fe59aa6dSJacob Faibussowitsch + matin - the matrix 340185535b8eSBarry Smith . min - number of input rows 340285535b8eSBarry Smith . im - input rows 340385535b8eSBarry Smith . nin - number of input columns 340485535b8eSBarry Smith . in - input columns 340585535b8eSBarry Smith . v - numerical values input 340611a5261eSBarry Smith - addvin - `INSERT_VALUES` or `ADD_VALUES` 340785535b8eSBarry Smith 340820f4b53cSBarry Smith Level: advanced 340920f4b53cSBarry Smith 3410fe59aa6dSJacob Faibussowitsch Developer Notes: 341111a5261eSBarry Smith This has a complete copy of `MatSetValuesBlocked_MPIBAIJ()` which is terrible code un-reuse. 341285535b8eSBarry Smith 341367be906fSBarry Smith .seealso: `Mat`, `MatSetValuesBlocked()` 341485535b8eSBarry Smith @*/ 341566976f2fSJacob Faibussowitsch PETSC_EXTERN PetscErrorCode matmpibaijsetvaluesblocked_(Mat *matin, PetscInt *min, const PetscInt im[], PetscInt *nin, const PetscInt in[], const MatScalar v[], InsertMode *addvin) 3416d71ae5a4SJacob Faibussowitsch { 341785535b8eSBarry Smith /* convert input arguments to C version */ 341885535b8eSBarry Smith Mat mat = *matin; 341985535b8eSBarry Smith PetscInt m = *min, n = *nin; 342085535b8eSBarry Smith InsertMode addv = *addvin; 342185535b8eSBarry Smith 342285535b8eSBarry Smith Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 342385535b8eSBarry Smith const MatScalar *value; 342485535b8eSBarry Smith MatScalar *barray = baij->barray; 3425ace3abfcSBarry Smith PetscBool roworiented = baij->roworiented; 342685535b8eSBarry Smith PetscInt i, j, ii, jj, row, col, rstart = baij->rstartbs; 342785535b8eSBarry Smith PetscInt rend = baij->rendbs, cstart = baij->cstartbs, stepval; 3428d0f46423SBarry Smith PetscInt cend = baij->cendbs, bs = mat->rmap->bs, bs2 = baij->bs2; 342985535b8eSBarry Smith 343085535b8eSBarry Smith PetscFunctionBegin; 343185535b8eSBarry Smith /* tasks normally handled by MatSetValuesBlocked() */ 343226fbe8dcSKarl Rupp if (mat->insertmode == NOT_SET_VALUES) mat->insertmode = addv; 34335f80ce2aSJacob Faibussowitsch else PetscCheck(mat->insertmode == addv, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Cannot mix add values and insert values"); 34345f80ce2aSJacob Faibussowitsch PetscCheck(!mat->factortype, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Not for factored matrix"); 343585535b8eSBarry Smith if (mat->assembled) { 343685535b8eSBarry Smith mat->was_assembled = PETSC_TRUE; 343785535b8eSBarry Smith mat->assembled = PETSC_FALSE; 343885535b8eSBarry Smith } 34399566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(MAT_SetValues, mat, 0, 0, 0)); 344085535b8eSBarry Smith 344185535b8eSBarry Smith if (!barray) { 34429566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(bs2, &barray)); 344385535b8eSBarry Smith baij->barray = barray; 344485535b8eSBarry Smith } 344585535b8eSBarry Smith 344626fbe8dcSKarl Rupp if (roworiented) stepval = (n - 1) * bs; 344726fbe8dcSKarl Rupp else stepval = (m - 1) * bs; 344826fbe8dcSKarl Rupp 344985535b8eSBarry Smith for (i = 0; i < m; i++) { 345085535b8eSBarry Smith if (im[i] < 0) continue; 34516bdcaf15SBarry Smith PetscCheck(im[i] < baij->Mbs, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large, row %" PetscInt_FMT " max %" PetscInt_FMT, im[i], baij->Mbs - 1); 345285535b8eSBarry Smith if (im[i] >= rstart && im[i] < rend) { 345385535b8eSBarry Smith row = im[i] - rstart; 345485535b8eSBarry Smith for (j = 0; j < n; j++) { 345585535b8eSBarry Smith /* If NumCol = 1 then a copy is not required */ 345685535b8eSBarry Smith if ((roworiented) && (n == 1)) { 345785535b8eSBarry Smith barray = (MatScalar *)v + i * bs2; 345885535b8eSBarry Smith } else if ((!roworiented) && (m == 1)) { 345985535b8eSBarry Smith barray = (MatScalar *)v + j * bs2; 346085535b8eSBarry Smith } else { /* Here a copy is required */ 346185535b8eSBarry Smith if (roworiented) { 346285535b8eSBarry Smith value = v + i * (stepval + bs) * bs + j * bs; 346385535b8eSBarry Smith } else { 346485535b8eSBarry Smith value = v + j * (stepval + bs) * bs + i * bs; 346585535b8eSBarry Smith } 346685535b8eSBarry Smith for (ii = 0; ii < bs; ii++, value += stepval) { 3467ad540459SPierre Jolivet for (jj = 0; jj < bs; jj++) *barray++ = *value++; 346885535b8eSBarry Smith } 346985535b8eSBarry Smith barray -= bs2; 347085535b8eSBarry Smith } 347185535b8eSBarry Smith 347285535b8eSBarry Smith if (in[j] >= cstart && in[j] < cend) { 347385535b8eSBarry Smith col = in[j] - cstart; 34749566063dSJacob Faibussowitsch PetscCall(MatSetValuesBlocked_SeqBAIJ_Inlined(baij->A, row, col, barray, addv, im[i], in[j])); 3475f7d195e4SLawrence Mitchell } else if (in[j] < 0) { 3476f7d195e4SLawrence Mitchell continue; 3477f7d195e4SLawrence Mitchell } else { 3478f7d195e4SLawrence Mitchell PetscCheck(in[j] < baij->Nbs, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large, col %" PetscInt_FMT " max %" PetscInt_FMT, in[j], baij->Nbs - 1); 347985535b8eSBarry Smith if (mat->was_assembled) { 348048a46eb9SPierre Jolivet if (!baij->colmap) PetscCall(MatCreateColmap_MPIBAIJ_Private(mat)); 348185535b8eSBarry Smith 348285535b8eSBarry Smith #if defined(PETSC_USE_DEBUG) 348385535b8eSBarry Smith #if defined(PETSC_USE_CTABLE) 34849371c9d4SSatish Balay { 34859371c9d4SSatish Balay PetscInt data; 3486eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIGetWithDefault(baij->colmap, in[j] + 1, 0, &data)); 348708401ef6SPierre Jolivet PetscCheck((data - 1) % bs == 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Incorrect colmap"); 348885535b8eSBarry Smith } 348985535b8eSBarry Smith #else 349008401ef6SPierre Jolivet PetscCheck((baij->colmap[in[j]] - 1) % bs == 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Incorrect colmap"); 349185535b8eSBarry Smith #endif 349285535b8eSBarry Smith #endif 349385535b8eSBarry Smith #if defined(PETSC_USE_CTABLE) 3494eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIGetWithDefault(baij->colmap, in[j] + 1, 0, &col)); 349585535b8eSBarry Smith col = (col - 1) / bs; 349685535b8eSBarry Smith #else 349785535b8eSBarry Smith col = (baij->colmap[in[j]] - 1) / bs; 349885535b8eSBarry Smith #endif 3499f4f49eeaSPierre Jolivet if (col < 0 && !((Mat_SeqBAIJ *)baij->A->data)->nonew) { 35009566063dSJacob Faibussowitsch PetscCall(MatDisAssemble_MPIBAIJ(mat)); 350185535b8eSBarry Smith col = in[j]; 350285535b8eSBarry Smith } 350326fbe8dcSKarl Rupp } else col = in[j]; 35049566063dSJacob Faibussowitsch PetscCall(MatSetValuesBlocked_SeqBAIJ_Inlined(baij->B, row, col, barray, addv, im[i], in[j])); 350585535b8eSBarry Smith } 350685535b8eSBarry Smith } 350785535b8eSBarry Smith } else { 350885535b8eSBarry Smith if (!baij->donotstash) { 350985535b8eSBarry Smith if (roworiented) { 35109566063dSJacob Faibussowitsch PetscCall(MatStashValuesRowBlocked_Private(&mat->bstash, im[i], n, in, v, m, n, i)); 351185535b8eSBarry Smith } else { 35129566063dSJacob Faibussowitsch PetscCall(MatStashValuesColBlocked_Private(&mat->bstash, im[i], n, in, v, m, n, i)); 351385535b8eSBarry Smith } 351485535b8eSBarry Smith } 351585535b8eSBarry Smith } 351685535b8eSBarry Smith } 351785535b8eSBarry Smith 351885535b8eSBarry Smith /* task normally handled by MatSetValuesBlocked() */ 35199566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(MAT_SetValues, mat, 0, 0, 0)); 35203ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 352185535b8eSBarry Smith } 3522dfb205c3SBarry Smith 3523dfb205c3SBarry Smith /*@ 3524d8a51d2aSBarry Smith MatCreateMPIBAIJWithArrays - creates a `MATMPIBAIJ` matrix using arrays that contain in standard block CSR format for the local rows. 3525dfb205c3SBarry Smith 3526d083f849SBarry Smith Collective 3527dfb205c3SBarry Smith 3528dfb205c3SBarry Smith Input Parameters: 3529dfb205c3SBarry Smith + comm - MPI communicator 3530dfb205c3SBarry Smith . bs - the block size, only a block size of 1 is supported 353111a5261eSBarry Smith . m - number of local rows (Cannot be `PETSC_DECIDE`) 3532dfb205c3SBarry Smith . n - This value should be the same as the local size used in creating the 3533d8a51d2aSBarry Smith x vector for the matrix-vector product $ y = Ax $. (or `PETSC_DECIDE` to have 3534d8a51d2aSBarry Smith calculated if `N` is given) For square matrices `n` is almost always `m`. 3535d8a51d2aSBarry Smith . M - number of global rows (or `PETSC_DETERMINE` to have calculated if `m` is given) 3536d8a51d2aSBarry Smith . N - number of global columns (or `PETSC_DETERMINE` to have calculated if `n` is given) 3537483a2f95SBarry Smith . i - row indices; that is i[0] = 0, i[row] = i[row-1] + number of block elements in that rowth block row of the matrix 3538dfb205c3SBarry Smith . j - column indices 3539dfb205c3SBarry Smith - a - matrix values 3540dfb205c3SBarry Smith 3541dfb205c3SBarry Smith Output Parameter: 3542dfb205c3SBarry Smith . mat - the matrix 3543dfb205c3SBarry Smith 3544dfb205c3SBarry Smith Level: intermediate 3545dfb205c3SBarry Smith 3546dfb205c3SBarry Smith Notes: 354767be906fSBarry Smith The `i`, `j`, and `a` arrays ARE copied by this routine into the internal format used by PETSc; 3548dfb205c3SBarry Smith thus you CANNOT change the matrix entries by changing the values of a[] after you have 354911a5261eSBarry Smith called this routine. Use `MatCreateMPIAIJWithSplitArrays()` to avoid needing to copy the arrays. 3550dfb205c3SBarry Smith 35513adadaf3SJed Brown The order of the entries in values is the same as the block compressed sparse row storage format; that is, it is 35523adadaf3SJed Brown the same as a three dimensional array in Fortran values(bs,bs,nnz) that contains the first column of the first 35533adadaf3SJed Brown block, followed by the second column of the first block etc etc. That is, the blocks are contiguous in memory 35543adadaf3SJed Brown with column-major ordering within blocks. 35553adadaf3SJed Brown 3556d8a51d2aSBarry Smith The `i` and `j` indices are 0 based, and `i` indices are indices corresponding to the local `j` array. 3557dfb205c3SBarry Smith 355867be906fSBarry Smith .seealso: `Mat`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`, 35597d2c085eSPierre Jolivet `MATMPIAIJ`, `MatCreateAIJ()`, `MatCreateMPIAIJWithSplitArrays()` 3560dfb205c3SBarry Smith @*/ 3561d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIBAIJWithArrays(MPI_Comm comm, PetscInt bs, PetscInt m, PetscInt n, PetscInt M, PetscInt N, const PetscInt i[], const PetscInt j[], const PetscScalar a[], Mat *mat) 3562d71ae5a4SJacob Faibussowitsch { 3563dfb205c3SBarry Smith PetscFunctionBegin; 35645f80ce2aSJacob Faibussowitsch PetscCheck(!i[0], PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "i (row indices) must start with 0"); 35655f80ce2aSJacob Faibussowitsch PetscCheck(m >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "local number of rows (m) cannot be PETSC_DECIDE, or negative"); 35669566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, mat)); 35679566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*mat, m, n, M, N)); 35689566063dSJacob Faibussowitsch PetscCall(MatSetType(*mat, MATMPIBAIJ)); 35699566063dSJacob Faibussowitsch PetscCall(MatSetBlockSize(*mat, bs)); 35709566063dSJacob Faibussowitsch PetscCall(MatSetUp(*mat)); 35719566063dSJacob Faibussowitsch PetscCall(MatSetOption(*mat, MAT_ROW_ORIENTED, PETSC_FALSE)); 35729566063dSJacob Faibussowitsch PetscCall(MatMPIBAIJSetPreallocationCSR(*mat, bs, i, j, a)); 35739566063dSJacob Faibussowitsch PetscCall(MatSetOption(*mat, MAT_ROW_ORIENTED, PETSC_TRUE)); 35743ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3575dfb205c3SBarry Smith } 3576e561ad89SHong Zhang 3577d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIMatConcatenateSeqMat_MPIBAIJ(MPI_Comm comm, Mat inmat, PetscInt n, MatReuse scall, Mat *outmat) 3578d71ae5a4SJacob Faibussowitsch { 3579bd153df0SHong Zhang PetscInt m, N, i, rstart, nnz, Ii, bs, cbs; 3580bd153df0SHong Zhang PetscInt *indx; 3581bd153df0SHong Zhang PetscScalar *values; 3582e561ad89SHong Zhang 3583e561ad89SHong Zhang PetscFunctionBegin; 35849566063dSJacob Faibussowitsch PetscCall(MatGetSize(inmat, &m, &N)); 3585bd153df0SHong Zhang if (scall == MAT_INITIAL_MATRIX) { /* symbolic phase */ 3586bd153df0SHong Zhang Mat_SeqBAIJ *a = (Mat_SeqBAIJ *)inmat->data; 35872c6ba4edSHong Zhang PetscInt *dnz, *onz, mbs, Nbs, nbs; 3588bd153df0SHong Zhang PetscInt *bindx, rmax = a->rmax, j; 358977f764caSHong Zhang PetscMPIInt rank, size; 3590e561ad89SHong Zhang 35919566063dSJacob Faibussowitsch PetscCall(MatGetBlockSizes(inmat, &bs, &cbs)); 35929371c9d4SSatish Balay mbs = m / bs; 35939371c9d4SSatish Balay Nbs = N / cbs; 359448a46eb9SPierre Jolivet if (n == PETSC_DECIDE) PetscCall(PetscSplitOwnershipBlock(comm, cbs, &n, &N)); 3595da91a574SPierre Jolivet nbs = n / cbs; 3596e561ad89SHong Zhang 35979566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(rmax, &bindx)); 3598d0609cedSBarry Smith MatPreallocateBegin(comm, mbs, nbs, dnz, onz); /* inline function, output __end and __rstart are used below */ 359977f764caSHong Zhang 36009566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 36019566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &size)); 360277f764caSHong Zhang if (rank == size - 1) { 360377f764caSHong Zhang /* Check sum(nbs) = Nbs */ 36045f80ce2aSJacob Faibussowitsch PetscCheck(__end == Nbs, PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "Sum of local block columns %" PetscInt_FMT " != global block columns %" PetscInt_FMT, __end, Nbs); 360577f764caSHong Zhang } 360677f764caSHong Zhang 3607d0609cedSBarry Smith rstart = __rstart; /* block rstart of *outmat; see inline function MatPreallocateBegin */ 3608bd153df0SHong Zhang for (i = 0; i < mbs; i++) { 36099566063dSJacob Faibussowitsch PetscCall(MatGetRow_SeqBAIJ(inmat, i * bs, &nnz, &indx, NULL)); /* non-blocked nnz and indx */ 3610647a6520SHong Zhang nnz = nnz / bs; 3611647a6520SHong Zhang for (j = 0; j < nnz; j++) bindx[j] = indx[j * bs] / bs; 36129566063dSJacob Faibussowitsch PetscCall(MatPreallocateSet(i + rstart, nnz, bindx, dnz, onz)); 36139566063dSJacob Faibussowitsch PetscCall(MatRestoreRow_SeqBAIJ(inmat, i * bs, &nnz, &indx, NULL)); 3614e561ad89SHong Zhang } 36159566063dSJacob Faibussowitsch PetscCall(PetscFree(bindx)); 3616e561ad89SHong Zhang 36179566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, outmat)); 36189566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*outmat, m, n, PETSC_DETERMINE, PETSC_DETERMINE)); 36199566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizes(*outmat, bs, cbs)); 36209566063dSJacob Faibussowitsch PetscCall(MatSetType(*outmat, MATBAIJ)); 36219566063dSJacob Faibussowitsch PetscCall(MatSeqBAIJSetPreallocation(*outmat, bs, 0, dnz)); 36229566063dSJacob Faibussowitsch PetscCall(MatMPIBAIJSetPreallocation(*outmat, bs, 0, dnz, 0, onz)); 3623d0609cedSBarry Smith MatPreallocateEnd(dnz, onz); 36249566063dSJacob Faibussowitsch PetscCall(MatSetOption(*outmat, MAT_NO_OFF_PROC_ENTRIES, PETSC_TRUE)); 3625e561ad89SHong Zhang } 3626e561ad89SHong Zhang 3627bd153df0SHong Zhang /* numeric phase */ 36289566063dSJacob Faibussowitsch PetscCall(MatGetBlockSizes(inmat, &bs, &cbs)); 36299566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(*outmat, &rstart, NULL)); 3630e561ad89SHong Zhang 3631e561ad89SHong Zhang for (i = 0; i < m; i++) { 36329566063dSJacob Faibussowitsch PetscCall(MatGetRow_SeqBAIJ(inmat, i, &nnz, &indx, &values)); 3633e561ad89SHong Zhang Ii = i + rstart; 36349566063dSJacob Faibussowitsch PetscCall(MatSetValues(*outmat, 1, &Ii, nnz, indx, values, INSERT_VALUES)); 36359566063dSJacob Faibussowitsch PetscCall(MatRestoreRow_SeqBAIJ(inmat, i, &nnz, &indx, &values)); 3636e561ad89SHong Zhang } 36379566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(*outmat, MAT_FINAL_ASSEMBLY)); 36389566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(*outmat, MAT_FINAL_ASSEMBLY)); 36393ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3640e561ad89SHong Zhang } 3641