xref: /petsc/src/mat/impls/baij/mpi/mpibaij.c (revision 7c4f633dc6bb6149cca88d301ead35a99e103cbb)
1be1d678aSKris Buschelman #define PETSCMAT_DLL
279bdfe76SSatish Balay 
3*7c4f633dSBarry Smith #include "../src/mat/impls/baij/mpi/mpibaij.h"   /*I  "petscmat.h"  I*/
479bdfe76SSatish Balay 
5dfbe8321SBarry Smith EXTERN PetscErrorCode MatSetUpMultiply_MPIBAIJ(Mat);
6dfbe8321SBarry Smith EXTERN PetscErrorCode DisAssemble_MPIBAIJ(Mat);
7b24ad042SBarry Smith EXTERN PetscErrorCode MatIncreaseOverlap_MPIBAIJ(Mat,PetscInt,IS[],PetscInt);
8b24ad042SBarry Smith EXTERN PetscErrorCode MatGetSubMatrices_MPIBAIJ(Mat,PetscInt,const IS[],const IS[],MatReuse,Mat *[]);
9b24ad042SBarry Smith EXTERN PetscErrorCode MatGetValues_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt [],PetscScalar []);
10b24ad042SBarry Smith EXTERN PetscErrorCode MatSetValues_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt [],const PetscScalar [],InsertMode);
11b24ad042SBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode);
12b24ad042SBarry Smith EXTERN PetscErrorCode MatGetRow_SeqBAIJ(Mat,PetscInt,PetscInt*,PetscInt*[],PetscScalar*[]);
13b24ad042SBarry Smith EXTERN PetscErrorCode MatRestoreRow_SeqBAIJ(Mat,PetscInt,PetscInt*,PetscInt*[],PetscScalar*[]);
14f4df32b1SMatthew Knepley EXTERN PetscErrorCode MatZeroRows_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscScalar);
1593fea6afSBarry Smith 
164a2ae208SSatish Balay #undef __FUNCT__
17985db425SBarry Smith #define __FUNCT__ "MatGetRowMaxAbs_MPIBAIJ"
18985db425SBarry Smith PetscErrorCode MatGetRowMaxAbs_MPIBAIJ(Mat A,Vec v,PetscInt idx[])
197843d17aSBarry Smith {
207843d17aSBarry Smith   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)A->data;
21dfbe8321SBarry Smith   PetscErrorCode ierr;
22985db425SBarry Smith   PetscInt       i,*idxb = 0;
2387828ca2SBarry Smith   PetscScalar    *va,*vb;
247843d17aSBarry Smith   Vec            vtmp;
257843d17aSBarry Smith 
267843d17aSBarry Smith   PetscFunctionBegin;
27985db425SBarry Smith   ierr = MatGetRowMaxAbs(a->A,v,idx);CHKERRQ(ierr);
281ebc52fbSHong Zhang   ierr = VecGetArray(v,&va);CHKERRQ(ierr);
29985db425SBarry Smith   if (idx) {
30d0f46423SBarry Smith     for (i=0; i<A->cmap->n; i++) {if (PetscAbsScalar(va[i])) idx[i] += A->cmap->rstart;}
31985db425SBarry Smith   }
327843d17aSBarry Smith 
33d0f46423SBarry Smith   ierr = VecCreateSeq(PETSC_COMM_SELF,A->rmap->n,&vtmp);CHKERRQ(ierr);
34d0f46423SBarry Smith   if (idx) {ierr = PetscMalloc(A->rmap->n*sizeof(PetscInt),&idxb);CHKERRQ(ierr);}
35985db425SBarry Smith   ierr = MatGetRowMaxAbs(a->B,vtmp,idxb);CHKERRQ(ierr);
361ebc52fbSHong Zhang   ierr = VecGetArray(vtmp,&vb);CHKERRQ(ierr);
377843d17aSBarry Smith 
38d0f46423SBarry Smith   for (i=0; i<A->rmap->n; i++){
39d0f46423SBarry Smith     if (PetscAbsScalar(va[i]) < PetscAbsScalar(vb[i])) {va[i] = vb[i]; if (idx) idx[i] = A->cmap->bs*a->garray[idxb[i]/A->cmap->bs] + (idxb[i] % A->cmap->bs);}
407843d17aSBarry Smith   }
417843d17aSBarry Smith 
421ebc52fbSHong Zhang   ierr = VecRestoreArray(v,&va);CHKERRQ(ierr);
431ebc52fbSHong Zhang   ierr = VecRestoreArray(vtmp,&vb);CHKERRQ(ierr);
44985db425SBarry Smith   if (idxb) {ierr = PetscFree(idxb);CHKERRQ(ierr);}
45ac355199SBarry Smith   ierr = VecDestroy(vtmp);CHKERRQ(ierr);
467843d17aSBarry Smith   PetscFunctionReturn(0);
477843d17aSBarry Smith }
487843d17aSBarry Smith 
497fc3c18eSBarry Smith EXTERN_C_BEGIN
504a2ae208SSatish Balay #undef __FUNCT__
514a2ae208SSatish Balay #define __FUNCT__ "MatStoreValues_MPIBAIJ"
52be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatStoreValues_MPIBAIJ(Mat mat)
537fc3c18eSBarry Smith {
547fc3c18eSBarry Smith   Mat_MPIBAIJ    *aij = (Mat_MPIBAIJ *)mat->data;
55dfbe8321SBarry Smith   PetscErrorCode ierr;
567fc3c18eSBarry Smith 
577fc3c18eSBarry Smith   PetscFunctionBegin;
587fc3c18eSBarry Smith   ierr = MatStoreValues(aij->A);CHKERRQ(ierr);
597fc3c18eSBarry Smith   ierr = MatStoreValues(aij->B);CHKERRQ(ierr);
607fc3c18eSBarry Smith   PetscFunctionReturn(0);
617fc3c18eSBarry Smith }
627fc3c18eSBarry Smith EXTERN_C_END
637fc3c18eSBarry Smith 
647fc3c18eSBarry Smith EXTERN_C_BEGIN
654a2ae208SSatish Balay #undef __FUNCT__
664a2ae208SSatish Balay #define __FUNCT__ "MatRetrieveValues_MPIBAIJ"
67be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatRetrieveValues_MPIBAIJ(Mat mat)
687fc3c18eSBarry Smith {
697fc3c18eSBarry Smith   Mat_MPIBAIJ    *aij = (Mat_MPIBAIJ *)mat->data;
70dfbe8321SBarry Smith   PetscErrorCode ierr;
717fc3c18eSBarry Smith 
727fc3c18eSBarry Smith   PetscFunctionBegin;
737fc3c18eSBarry Smith   ierr = MatRetrieveValues(aij->A);CHKERRQ(ierr);
747fc3c18eSBarry Smith   ierr = MatRetrieveValues(aij->B);CHKERRQ(ierr);
757fc3c18eSBarry Smith   PetscFunctionReturn(0);
767fc3c18eSBarry Smith }
777fc3c18eSBarry Smith EXTERN_C_END
787fc3c18eSBarry Smith 
79537820f0SBarry Smith /*
80537820f0SBarry Smith      Local utility routine that creates a mapping from the global column
8157b952d6SSatish Balay    number to the local number in the off-diagonal part of the local
8257b952d6SSatish Balay    storage of the matrix.  This is done in a non scable way since the
8357b952d6SSatish Balay    length of colmap equals the global matrix length.
8457b952d6SSatish Balay */
854a2ae208SSatish Balay #undef __FUNCT__
864a2ae208SSatish Balay #define __FUNCT__ "CreateColmap_MPIBAIJ_Private"
87dfbe8321SBarry Smith PetscErrorCode CreateColmap_MPIBAIJ_Private(Mat mat)
8857b952d6SSatish Balay {
8957b952d6SSatish Balay   Mat_MPIBAIJ    *baij = (Mat_MPIBAIJ*)mat->data;
9057b952d6SSatish Balay   Mat_SeqBAIJ    *B = (Mat_SeqBAIJ*)baij->B->data;
916849ba73SBarry Smith   PetscErrorCode ierr;
92d0f46423SBarry Smith   PetscInt       nbs = B->nbs,i,bs=mat->rmap->bs;
9357b952d6SSatish Balay 
94d64ed03dSBarry Smith   PetscFunctionBegin;
95aa482453SBarry Smith #if defined (PETSC_USE_CTABLE)
96f14a1c24SBarry Smith   ierr = PetscTableCreate(baij->nbs,&baij->colmap);CHKERRQ(ierr);
9748e59246SSatish Balay   for (i=0; i<nbs; i++){
980f5bd95cSBarry Smith     ierr = PetscTableAdd(baij->colmap,baij->garray[i]+1,i*bs+1);CHKERRQ(ierr);
9948e59246SSatish Balay   }
10048e59246SSatish Balay #else
101b24ad042SBarry Smith   ierr = PetscMalloc((baij->Nbs+1)*sizeof(PetscInt),&baij->colmap);CHKERRQ(ierr);
10252e6d16bSBarry Smith   ierr = PetscLogObjectMemory(mat,baij->Nbs*sizeof(PetscInt));CHKERRQ(ierr);
103b24ad042SBarry Smith   ierr = PetscMemzero(baij->colmap,baij->Nbs*sizeof(PetscInt));CHKERRQ(ierr);
104928fc39bSSatish Balay   for (i=0; i<nbs; i++) baij->colmap[baij->garray[i]] = i*bs+1;
10548e59246SSatish Balay #endif
1063a40ed3dSBarry Smith   PetscFunctionReturn(0);
10757b952d6SSatish Balay }
10857b952d6SSatish Balay 
10980c1aa95SSatish Balay #define CHUNKSIZE  10
11080c1aa95SSatish Balay 
111f5e9677aSSatish Balay #define  MatSetValues_SeqBAIJ_A_Private(row,col,value,addv) \
11280c1aa95SSatish Balay { \
11380c1aa95SSatish Balay  \
11480c1aa95SSatish Balay     brow = row/bs;  \
11580c1aa95SSatish Balay     rp   = aj + ai[brow]; ap = aa + bs2*ai[brow]; \
116ac7a638eSSatish Balay     rmax = aimax[brow]; nrow = ailen[brow]; \
11780c1aa95SSatish Balay       bcol = col/bs; \
11880c1aa95SSatish Balay       ridx = row % bs; cidx = col % bs; \
119ab26458aSBarry Smith       low = 0; high = nrow; \
120ab26458aSBarry Smith       while (high-low > 3) { \
121ab26458aSBarry Smith         t = (low+high)/2; \
122ab26458aSBarry Smith         if (rp[t] > bcol) high = t; \
123ab26458aSBarry Smith         else              low  = t; \
124ab26458aSBarry Smith       } \
125ab26458aSBarry Smith       for (_i=low; _i<high; _i++) { \
12680c1aa95SSatish Balay         if (rp[_i] > bcol) break; \
12780c1aa95SSatish Balay         if (rp[_i] == bcol) { \
12880c1aa95SSatish Balay           bap  = ap +  bs2*_i + bs*cidx + ridx; \
129eada6651SSatish Balay           if (addv == ADD_VALUES) *bap += value;  \
130eada6651SSatish Balay           else                    *bap  = value;  \
131ac7a638eSSatish Balay           goto a_noinsert; \
13280c1aa95SSatish Balay         } \
13380c1aa95SSatish Balay       } \
13489280ab3SLois Curfman McInnes       if (a->nonew == 1) goto a_noinsert; \
135085a36d4SBarry Smith       if (a->nonew == -1) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \
136421e10b8SBarry Smith       MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,brow,bcol,rmax,aa,ai,aj,rp,ap,aimax,a->nonew,MatScalar); \
13780c1aa95SSatish Balay       N = nrow++ - 1;  \
13880c1aa95SSatish Balay       /* shift up all the later entries in this row */ \
13980c1aa95SSatish Balay       for (ii=N; ii>=_i; ii--) { \
14080c1aa95SSatish Balay         rp[ii+1] = rp[ii]; \
1413eda8832SBarry Smith         ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \
14280c1aa95SSatish Balay       } \
1433eda8832SBarry Smith       if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr); }  \
14480c1aa95SSatish Balay       rp[_i]                      = bcol;  \
14580c1aa95SSatish Balay       ap[bs2*_i + bs*cidx + ridx] = value;  \
146ac7a638eSSatish Balay       a_noinsert:; \
14780c1aa95SSatish Balay     ailen[brow] = nrow; \
14880c1aa95SSatish Balay }
14957b952d6SSatish Balay 
150ac7a638eSSatish Balay #define  MatSetValues_SeqBAIJ_B_Private(row,col,value,addv) \
151ac7a638eSSatish Balay { \
152ac7a638eSSatish Balay     brow = row/bs;  \
153ac7a638eSSatish Balay     rp   = bj + bi[brow]; ap = ba + bs2*bi[brow]; \
154ac7a638eSSatish Balay     rmax = bimax[brow]; nrow = bilen[brow]; \
155ac7a638eSSatish Balay       bcol = col/bs; \
156ac7a638eSSatish Balay       ridx = row % bs; cidx = col % bs; \
157ac7a638eSSatish Balay       low = 0; high = nrow; \
158ac7a638eSSatish Balay       while (high-low > 3) { \
159ac7a638eSSatish Balay         t = (low+high)/2; \
160ac7a638eSSatish Balay         if (rp[t] > bcol) high = t; \
161ac7a638eSSatish Balay         else              low  = t; \
162ac7a638eSSatish Balay       } \
163ac7a638eSSatish Balay       for (_i=low; _i<high; _i++) { \
164ac7a638eSSatish Balay         if (rp[_i] > bcol) break; \
165ac7a638eSSatish Balay         if (rp[_i] == bcol) { \
166ac7a638eSSatish Balay           bap  = ap +  bs2*_i + bs*cidx + ridx; \
167ac7a638eSSatish Balay           if (addv == ADD_VALUES) *bap += value;  \
168ac7a638eSSatish Balay           else                    *bap  = value;  \
169ac7a638eSSatish Balay           goto b_noinsert; \
170ac7a638eSSatish Balay         } \
171ac7a638eSSatish Balay       } \
17289280ab3SLois Curfman McInnes       if (b->nonew == 1) goto b_noinsert; \
173085a36d4SBarry Smith       if (b->nonew == -1) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \
174421e10b8SBarry Smith       MatSeqXAIJReallocateAIJ(B,b->mbs,bs2,nrow,brow,bcol,rmax,ba,bi,bj,rp,ap,bimax,b->nonew,MatScalar); \
175085a36d4SBarry Smith       CHKMEMQ;\
176ac7a638eSSatish Balay       N = nrow++ - 1;  \
177ac7a638eSSatish Balay       /* shift up all the later entries in this row */ \
178ac7a638eSSatish Balay       for (ii=N; ii>=_i; ii--) { \
179ac7a638eSSatish Balay         rp[ii+1] = rp[ii]; \
1803eda8832SBarry Smith         ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \
181ac7a638eSSatish Balay       } \
1823eda8832SBarry Smith       if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr);}  \
183ac7a638eSSatish Balay       rp[_i]                      = bcol;  \
184ac7a638eSSatish Balay       ap[bs2*_i + bs*cidx + ridx] = value;  \
185ac7a638eSSatish Balay       b_noinsert:; \
186ac7a638eSSatish Balay     bilen[brow] = nrow; \
187ac7a638eSSatish Balay }
188ac7a638eSSatish Balay 
1894a2ae208SSatish Balay #undef __FUNCT__
1904a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_MPIBAIJ"
191b24ad042SBarry Smith PetscErrorCode MatSetValues_MPIBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv)
19257b952d6SSatish Balay {
19357b952d6SSatish Balay   Mat_MPIBAIJ    *baij = (Mat_MPIBAIJ*)mat->data;
19493fea6afSBarry Smith   MatScalar      value;
195273d9f13SBarry Smith   PetscTruth     roworiented = baij->roworiented;
196dfbe8321SBarry Smith   PetscErrorCode ierr;
197b24ad042SBarry Smith   PetscInt       i,j,row,col;
198d0f46423SBarry Smith   PetscInt       rstart_orig=mat->rmap->rstart;
199d0f46423SBarry Smith   PetscInt       rend_orig=mat->rmap->rend,cstart_orig=mat->cmap->rstart;
200d0f46423SBarry Smith   PetscInt       cend_orig=mat->cmap->rend,bs=mat->rmap->bs;
20157b952d6SSatish Balay 
202eada6651SSatish Balay   /* Some Variables required in the macro */
20380c1aa95SSatish Balay   Mat            A = baij->A;
20480c1aa95SSatish Balay   Mat_SeqBAIJ    *a = (Mat_SeqBAIJ*)(A)->data;
205b24ad042SBarry Smith   PetscInt       *aimax=a->imax,*ai=a->i,*ailen=a->ilen,*aj=a->j;
2063eda8832SBarry Smith   MatScalar      *aa=a->a;
207ac7a638eSSatish Balay 
208ac7a638eSSatish Balay   Mat            B = baij->B;
209ac7a638eSSatish Balay   Mat_SeqBAIJ    *b = (Mat_SeqBAIJ*)(B)->data;
210b24ad042SBarry Smith   PetscInt       *bimax=b->imax,*bi=b->i,*bilen=b->ilen,*bj=b->j;
2113eda8832SBarry Smith   MatScalar      *ba=b->a;
212ac7a638eSSatish Balay 
213b24ad042SBarry Smith   PetscInt       *rp,ii,nrow,_i,rmax,N,brow,bcol;
214b24ad042SBarry Smith   PetscInt       low,high,t,ridx,cidx,bs2=a->bs2;
2153eda8832SBarry Smith   MatScalar      *ap,*bap;
21680c1aa95SSatish Balay 
217d64ed03dSBarry Smith   PetscFunctionBegin;
21857b952d6SSatish Balay   for (i=0; i<m; i++) {
2195ef9f2a5SBarry Smith     if (im[i] < 0) continue;
2202515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
221d0f46423SBarry Smith     if (im[i] >= mat->rmap->N) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],mat->rmap->N-1);
222639f9d9dSBarry Smith #endif
22357b952d6SSatish Balay     if (im[i] >= rstart_orig && im[i] < rend_orig) {
22457b952d6SSatish Balay       row = im[i] - rstart_orig;
22557b952d6SSatish Balay       for (j=0; j<n; j++) {
22657b952d6SSatish Balay         if (in[j] >= cstart_orig && in[j] < cend_orig){
22757b952d6SSatish Balay           col = in[j] - cstart_orig;
22857b952d6SSatish Balay           if (roworiented) value = v[i*n+j]; else value = v[i+j*m];
229f5e9677aSSatish Balay           MatSetValues_SeqBAIJ_A_Private(row,col,value,addv);
23080c1aa95SSatish Balay           /* ierr = MatSetValues_SeqBAIJ(baij->A,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */
23173959e64SBarry Smith         } else if (in[j] < 0) continue;
2322515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
233d0f46423SBarry Smith         else if (in[j] >= mat->cmap->N) {SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",in[i],mat->cmap->N-1);}
234639f9d9dSBarry Smith #endif
23557b952d6SSatish Balay         else {
23657b952d6SSatish Balay           if (mat->was_assembled) {
237905e6a2fSBarry Smith             if (!baij->colmap) {
238905e6a2fSBarry Smith               ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
239905e6a2fSBarry Smith             }
240aa482453SBarry Smith #if defined (PETSC_USE_CTABLE)
2410f5bd95cSBarry Smith             ierr = PetscTableFind(baij->colmap,in[j]/bs + 1,&col);CHKERRQ(ierr);
242bba1ac68SSatish Balay             col  = col - 1;
24348e59246SSatish Balay #else
244bba1ac68SSatish Balay             col = baij->colmap[in[j]/bs] - 1;
24548e59246SSatish Balay #endif
24657b952d6SSatish Balay             if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) {
24757b952d6SSatish Balay               ierr = DisAssemble_MPIBAIJ(mat);CHKERRQ(ierr);
2488295de27SSatish Balay               col =  in[j];
2499bf004c3SSatish Balay               /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */
2509bf004c3SSatish Balay               B = baij->B;
2519bf004c3SSatish Balay               b = (Mat_SeqBAIJ*)(B)->data;
2529bf004c3SSatish Balay               bimax=b->imax;bi=b->i;bilen=b->ilen;bj=b->j;
2539bf004c3SSatish Balay               ba=b->a;
254bba1ac68SSatish Balay             } else col += in[j]%bs;
2558295de27SSatish Balay           } else col = in[j];
25657b952d6SSatish Balay           if (roworiented) value = v[i*n+j]; else value = v[i+j*m];
25790da58bdSSatish Balay           MatSetValues_SeqBAIJ_B_Private(row,col,value,addv);
25890da58bdSSatish Balay           /* ierr = MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */
25957b952d6SSatish Balay         }
26057b952d6SSatish Balay       }
261d64ed03dSBarry Smith     } else {
26290f02eecSBarry Smith       if (!baij->donotstash) {
263ff2fd236SBarry Smith         if (roworiented) {
2646fa18ffdSBarry Smith           ierr = MatStashValuesRow_Private(&mat->stash,im[i],n,in,v+i*n);CHKERRQ(ierr);
265ff2fd236SBarry Smith         } else {
2666fa18ffdSBarry Smith           ierr = MatStashValuesCol_Private(&mat->stash,im[i],n,in,v+i,m);CHKERRQ(ierr);
26757b952d6SSatish Balay         }
26857b952d6SSatish Balay       }
26957b952d6SSatish Balay     }
27090f02eecSBarry Smith   }
2713a40ed3dSBarry Smith   PetscFunctionReturn(0);
27257b952d6SSatish Balay }
27357b952d6SSatish Balay 
2744a2ae208SSatish Balay #undef __FUNCT__
27597e5c40aSBarry Smith #define __FUNCT__ "MatSetValuesBlocked_MPIBAIJ"
27697e5c40aSBarry Smith PetscErrorCode MatSetValuesBlocked_MPIBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv)
277ab26458aSBarry Smith {
278ab26458aSBarry Smith   Mat_MPIBAIJ       *baij = (Mat_MPIBAIJ*)mat->data;
279dd6ea824SBarry Smith   const PetscScalar *value;
280f15d580aSBarry Smith   MatScalar         *barray=baij->barray;
281273d9f13SBarry Smith   PetscTruth        roworiented = baij->roworiented;
282dfbe8321SBarry Smith   PetscErrorCode    ierr;
283899cda47SBarry Smith   PetscInt          i,j,ii,jj,row,col,rstart=baij->rstartbs;
284899cda47SBarry Smith   PetscInt          rend=baij->rendbs,cstart=baij->cstartbs,stepval;
285d0f46423SBarry Smith   PetscInt          cend=baij->cendbs,bs=mat->rmap->bs,bs2=baij->bs2;
286ab26458aSBarry Smith 
287b16ae2b1SBarry Smith   PetscFunctionBegin;
28830793edcSSatish Balay   if(!barray) {
28982502324SSatish Balay     ierr         = PetscMalloc(bs2*sizeof(MatScalar),&barray);CHKERRQ(ierr);
29082502324SSatish Balay     baij->barray = barray;
29130793edcSSatish Balay   }
29230793edcSSatish Balay 
293ab26458aSBarry Smith   if (roworiented) {
294ab26458aSBarry Smith     stepval = (n-1)*bs;
295ab26458aSBarry Smith   } else {
296ab26458aSBarry Smith     stepval = (m-1)*bs;
297ab26458aSBarry Smith   }
298ab26458aSBarry Smith   for (i=0; i<m; i++) {
2995ef9f2a5SBarry Smith     if (im[i] < 0) continue;
3002515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
30177431f27SBarry Smith     if (im[i] >= baij->Mbs) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large, row %D max %D",im[i],baij->Mbs-1);
302ab26458aSBarry Smith #endif
303ab26458aSBarry Smith     if (im[i] >= rstart && im[i] < rend) {
304ab26458aSBarry Smith       row = im[i] - rstart;
305ab26458aSBarry Smith       for (j=0; j<n; j++) {
30615b57d14SSatish Balay         /* If NumCol = 1 then a copy is not required */
30715b57d14SSatish Balay         if ((roworiented) && (n == 1)) {
308f15d580aSBarry Smith           barray = (MatScalar*)v + i*bs2;
30915b57d14SSatish Balay         } else if((!roworiented) && (m == 1)) {
310f15d580aSBarry Smith           barray = (MatScalar*)v + j*bs2;
31115b57d14SSatish Balay         } else { /* Here a copy is required */
312ab26458aSBarry Smith           if (roworiented) {
313ab26458aSBarry Smith             value = v + i*(stepval+bs)*bs + j*bs;
314ab26458aSBarry Smith           } else {
315ab26458aSBarry Smith             value = v + j*(stepval+bs)*bs + i*bs;
316abef11f7SSatish Balay           }
31747513183SBarry Smith           for (ii=0; ii<bs; ii++,value+=stepval) {
31847513183SBarry Smith             for (jj=0; jj<bs; jj++) {
31930793edcSSatish Balay               *barray++  = *value++;
32047513183SBarry Smith             }
32147513183SBarry Smith           }
32230793edcSSatish Balay           barray -=bs2;
32315b57d14SSatish Balay         }
324abef11f7SSatish Balay 
325abef11f7SSatish Balay         if (in[j] >= cstart && in[j] < cend){
326abef11f7SSatish Balay           col  = in[j] - cstart;
32797e5c40aSBarry Smith           ierr = MatSetValuesBlocked_SeqBAIJ(baij->A,1,&row,1,&col,barray,addv);CHKERRQ(ierr);
328ab26458aSBarry Smith         }
3295ef9f2a5SBarry Smith         else if (in[j] < 0) continue;
3302515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
33177431f27SBarry Smith         else if (in[j] >= baij->Nbs) {SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large, col %D max %D",in[j],baij->Nbs-1);}
332ab26458aSBarry Smith #endif
333ab26458aSBarry Smith         else {
334ab26458aSBarry Smith           if (mat->was_assembled) {
335ab26458aSBarry Smith             if (!baij->colmap) {
336ab26458aSBarry Smith               ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
337ab26458aSBarry Smith             }
338a5eb4965SSatish Balay 
3392515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
340aa482453SBarry Smith #if defined (PETSC_USE_CTABLE)
341b24ad042SBarry Smith             { PetscInt data;
3420f5bd95cSBarry Smith               ierr = PetscTableFind(baij->colmap,in[j]+1,&data);CHKERRQ(ierr);
34329bbc08cSBarry Smith               if ((data - 1) % bs) SETERRQ(PETSC_ERR_PLIB,"Incorrect colmap");
344fa46199cSSatish Balay             }
34548e59246SSatish Balay #else
34629bbc08cSBarry Smith             if ((baij->colmap[in[j]] - 1) % bs) SETERRQ(PETSC_ERR_PLIB,"Incorrect colmap");
347a5eb4965SSatish Balay #endif
34848e59246SSatish Balay #endif
349aa482453SBarry Smith #if defined (PETSC_USE_CTABLE)
3500f5bd95cSBarry Smith 	    ierr = PetscTableFind(baij->colmap,in[j]+1,&col);CHKERRQ(ierr);
351fa46199cSSatish Balay             col  = (col - 1)/bs;
35248e59246SSatish Balay #else
353a5eb4965SSatish Balay             col = (baij->colmap[in[j]] - 1)/bs;
35448e59246SSatish Balay #endif
355ab26458aSBarry Smith             if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) {
356ab26458aSBarry Smith               ierr = DisAssemble_MPIBAIJ(mat);CHKERRQ(ierr);
357ab26458aSBarry Smith               col =  in[j];
358ab26458aSBarry Smith             }
359ab26458aSBarry Smith           }
360ab26458aSBarry Smith           else col = in[j];
36197e5c40aSBarry Smith           ierr = MatSetValuesBlocked_SeqBAIJ(baij->B,1,&row,1,&col,barray,addv);CHKERRQ(ierr);
362ab26458aSBarry Smith         }
363ab26458aSBarry Smith       }
364d64ed03dSBarry Smith     } else {
365ab26458aSBarry Smith       if (!baij->donotstash) {
366ff2fd236SBarry Smith         if (roworiented) {
3676fa18ffdSBarry Smith           ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
368ff2fd236SBarry Smith         } else {
3696fa18ffdSBarry Smith           ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
370ff2fd236SBarry Smith         }
371abef11f7SSatish Balay       }
372ab26458aSBarry Smith     }
373ab26458aSBarry Smith   }
3743a40ed3dSBarry Smith   PetscFunctionReturn(0);
375ab26458aSBarry Smith }
3766fa18ffdSBarry Smith 
3770bdbc534SSatish Balay #define HASH_KEY 0.6180339887
378b24ad042SBarry Smith #define HASH(size,key,tmp) (tmp = (key)*HASH_KEY,(PetscInt)((size)*(tmp-(PetscInt)tmp)))
379b24ad042SBarry Smith /* #define HASH(size,key) ((PetscInt)((size)*fmod(((key)*HASH_KEY),1))) */
380b24ad042SBarry Smith /* #define HASH(size,key,tmp) ((PetscInt)((size)*fmod(((key)*HASH_KEY),1))) */
3814a2ae208SSatish Balay #undef __FUNCT__
38297e5c40aSBarry Smith #define __FUNCT__ "MatSetValues_MPIBAIJ_HT"
38397e5c40aSBarry Smith PetscErrorCode MatSetValues_MPIBAIJ_HT(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv)
3840bdbc534SSatish Balay {
3850bdbc534SSatish Balay   Mat_MPIBAIJ    *baij = (Mat_MPIBAIJ*)mat->data;
386273d9f13SBarry Smith   PetscTruth     roworiented = baij->roworiented;
387dfbe8321SBarry Smith   PetscErrorCode ierr;
388b24ad042SBarry Smith   PetscInt       i,j,row,col;
389d0f46423SBarry Smith   PetscInt       rstart_orig=mat->rmap->rstart;
390d0f46423SBarry Smith   PetscInt       rend_orig=mat->rmap->rend,Nbs=baij->Nbs;
391d0f46423SBarry Smith   PetscInt       h1,key,size=baij->ht_size,bs=mat->rmap->bs,*HT=baij->ht,idx;
392329f5518SBarry Smith   PetscReal      tmp;
3933eda8832SBarry Smith   MatScalar      **HD = baij->hd,value;
3942515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
395b24ad042SBarry Smith   PetscInt       total_ct=baij->ht_total_ct,insert_ct=baij->ht_insert_ct;
3964a15367fSSatish Balay #endif
3970bdbc534SSatish Balay 
3980bdbc534SSatish Balay   PetscFunctionBegin;
3990bdbc534SSatish Balay 
4000bdbc534SSatish Balay   for (i=0; i<m; i++) {
4012515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
40229bbc08cSBarry Smith     if (im[i] < 0) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Negative row");
403d0f46423SBarry Smith     if (im[i] >= mat->rmap->N) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],mat->rmap->N-1);
4040bdbc534SSatish Balay #endif
4050bdbc534SSatish Balay       row = im[i];
406c2760754SSatish Balay     if (row >= rstart_orig && row < rend_orig) {
4070bdbc534SSatish Balay       for (j=0; j<n; j++) {
4080bdbc534SSatish Balay         col = in[j];
4096fa18ffdSBarry Smith         if (roworiented) value = v[i*n+j]; else value = v[i+j*m];
410b24ad042SBarry Smith         /* Look up PetscInto the Hash Table */
411c2760754SSatish Balay         key = (row/bs)*Nbs+(col/bs)+1;
412c2760754SSatish Balay         h1  = HASH(size,key,tmp);
4130bdbc534SSatish Balay 
414c2760754SSatish Balay 
415c2760754SSatish Balay         idx = h1;
4162515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
417187ce0cbSSatish Balay         insert_ct++;
418187ce0cbSSatish Balay         total_ct++;
419187ce0cbSSatish Balay         if (HT[idx] != key) {
420187ce0cbSSatish Balay           for (idx=h1; (idx<size) && (HT[idx]!=key); idx++,total_ct++);
421187ce0cbSSatish Balay           if (idx == size) {
422187ce0cbSSatish Balay             for (idx=0; (idx<h1) && (HT[idx]!=key); idx++,total_ct++);
423187ce0cbSSatish Balay             if (idx == h1) {
42477431f27SBarry Smith               SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"(%D,%D) has no entry in the hash table", row, col);
425187ce0cbSSatish Balay             }
426187ce0cbSSatish Balay           }
427187ce0cbSSatish Balay         }
428187ce0cbSSatish Balay #else
429c2760754SSatish Balay         if (HT[idx] != key) {
430c2760754SSatish Balay           for (idx=h1; (idx<size) && (HT[idx]!=key); idx++);
431c2760754SSatish Balay           if (idx == size) {
432c2760754SSatish Balay             for (idx=0; (idx<h1) && (HT[idx]!=key); idx++);
433c2760754SSatish Balay             if (idx == h1) {
43477431f27SBarry Smith               SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"(%D,%D) has no entry in the hash table", row, col);
435c2760754SSatish Balay             }
436c2760754SSatish Balay           }
437c2760754SSatish Balay         }
438187ce0cbSSatish Balay #endif
439c2760754SSatish Balay         /* A HASH table entry is found, so insert the values at the correct address */
440c2760754SSatish Balay         if (addv == ADD_VALUES) *(HD[idx]+ (col % bs)*bs + (row % bs)) += value;
441c2760754SSatish Balay         else                    *(HD[idx]+ (col % bs)*bs + (row % bs))  = value;
4420bdbc534SSatish Balay       }
4430bdbc534SSatish Balay     } else {
4440bdbc534SSatish Balay       if (!baij->donotstash) {
445ff2fd236SBarry Smith         if (roworiented) {
4468798bf22SSatish Balay           ierr = MatStashValuesRow_Private(&mat->stash,im[i],n,in,v+i*n);CHKERRQ(ierr);
447ff2fd236SBarry Smith         } else {
4488798bf22SSatish Balay           ierr = MatStashValuesCol_Private(&mat->stash,im[i],n,in,v+i,m);CHKERRQ(ierr);
4490bdbc534SSatish Balay         }
4500bdbc534SSatish Balay       }
4510bdbc534SSatish Balay     }
4520bdbc534SSatish Balay   }
4532515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
454187ce0cbSSatish Balay   baij->ht_total_ct = total_ct;
455187ce0cbSSatish Balay   baij->ht_insert_ct = insert_ct;
456187ce0cbSSatish Balay #endif
4570bdbc534SSatish Balay   PetscFunctionReturn(0);
4580bdbc534SSatish Balay }
4590bdbc534SSatish Balay 
4604a2ae208SSatish Balay #undef __FUNCT__
46197e5c40aSBarry Smith #define __FUNCT__ "MatSetValuesBlocked_MPIBAIJ_HT"
46297e5c40aSBarry Smith PetscErrorCode MatSetValuesBlocked_MPIBAIJ_HT(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv)
4630bdbc534SSatish Balay {
4640bdbc534SSatish Balay   Mat_MPIBAIJ       *baij = (Mat_MPIBAIJ*)mat->data;
465273d9f13SBarry Smith   PetscTruth        roworiented = baij->roworiented;
466dfbe8321SBarry Smith   PetscErrorCode    ierr;
467b24ad042SBarry Smith   PetscInt          i,j,ii,jj,row,col;
468899cda47SBarry Smith   PetscInt          rstart=baij->rstartbs;
469d0f46423SBarry Smith   PetscInt          rend=mat->rmap->rend,stepval,bs=mat->rmap->bs,bs2=baij->bs2,nbs2=n*bs2;
470b24ad042SBarry Smith   PetscInt          h1,key,size=baij->ht_size,idx,*HT=baij->ht,Nbs=baij->Nbs;
471329f5518SBarry Smith   PetscReal         tmp;
4723eda8832SBarry Smith   MatScalar         **HD = baij->hd,*baij_a;
473dd6ea824SBarry Smith   const PetscScalar *v_t,*value;
4742515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
475b24ad042SBarry Smith   PetscInt          total_ct=baij->ht_total_ct,insert_ct=baij->ht_insert_ct;
4764a15367fSSatish Balay #endif
4770bdbc534SSatish Balay 
478d0a41580SSatish Balay   PetscFunctionBegin;
479d0a41580SSatish Balay 
4800bdbc534SSatish Balay   if (roworiented) {
4810bdbc534SSatish Balay     stepval = (n-1)*bs;
4820bdbc534SSatish Balay   } else {
4830bdbc534SSatish Balay     stepval = (m-1)*bs;
4840bdbc534SSatish Balay   }
4850bdbc534SSatish Balay   for (i=0; i<m; i++) {
4862515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
48777431f27SBarry Smith     if (im[i] < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %D",im[i]);
48877431f27SBarry Smith     if (im[i] >= baij->Mbs) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],baij->Mbs-1);
4890bdbc534SSatish Balay #endif
4900bdbc534SSatish Balay     row   = im[i];
491ab715e2cSSatish Balay     v_t   = v + i*nbs2;
492c2760754SSatish Balay     if (row >= rstart && row < rend) {
4930bdbc534SSatish Balay       for (j=0; j<n; j++) {
4940bdbc534SSatish Balay         col = in[j];
4950bdbc534SSatish Balay 
4960bdbc534SSatish Balay         /* Look up into the Hash Table */
497c2760754SSatish Balay         key = row*Nbs+col+1;
498c2760754SSatish Balay         h1  = HASH(size,key,tmp);
4990bdbc534SSatish Balay 
500c2760754SSatish Balay         idx = h1;
5012515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
502187ce0cbSSatish Balay         total_ct++;
503187ce0cbSSatish Balay         insert_ct++;
504187ce0cbSSatish Balay        if (HT[idx] != key) {
505187ce0cbSSatish Balay           for (idx=h1; (idx<size) && (HT[idx]!=key); idx++,total_ct++);
506187ce0cbSSatish Balay           if (idx == size) {
507187ce0cbSSatish Balay             for (idx=0; (idx<h1) && (HT[idx]!=key); idx++,total_ct++);
508187ce0cbSSatish Balay             if (idx == h1) {
50977431f27SBarry Smith               SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"(%D,%D) has no entry in the hash table", row, col);
510187ce0cbSSatish Balay             }
511187ce0cbSSatish Balay           }
512187ce0cbSSatish Balay         }
513187ce0cbSSatish Balay #else
514c2760754SSatish Balay         if (HT[idx] != key) {
515c2760754SSatish Balay           for (idx=h1; (idx<size) && (HT[idx]!=key); idx++);
516c2760754SSatish Balay           if (idx == size) {
517c2760754SSatish Balay             for (idx=0; (idx<h1) && (HT[idx]!=key); idx++);
518c2760754SSatish Balay             if (idx == h1) {
51977431f27SBarry Smith               SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"(%D,%D) has no entry in the hash table", row, col);
520c2760754SSatish Balay             }
521c2760754SSatish Balay           }
522c2760754SSatish Balay         }
523187ce0cbSSatish Balay #endif
524c2760754SSatish Balay         baij_a = HD[idx];
5250bdbc534SSatish Balay         if (roworiented) {
526c2760754SSatish Balay           /*value = v + i*(stepval+bs)*bs + j*bs;*/
527187ce0cbSSatish Balay           /* value = v + (i*(stepval+bs)+j)*bs; */
528187ce0cbSSatish Balay           value = v_t;
529187ce0cbSSatish Balay           v_t  += bs;
530fef45726SSatish Balay           if (addv == ADD_VALUES) {
531c2760754SSatish Balay             for (ii=0; ii<bs; ii++,value+=stepval) {
532c2760754SSatish Balay               for (jj=ii; jj<bs2; jj+=bs) {
533fef45726SSatish Balay                 baij_a[jj]  += *value++;
534b4cc0f5aSSatish Balay               }
535b4cc0f5aSSatish Balay             }
536fef45726SSatish Balay           } else {
537c2760754SSatish Balay             for (ii=0; ii<bs; ii++,value+=stepval) {
538c2760754SSatish Balay               for (jj=ii; jj<bs2; jj+=bs) {
539fef45726SSatish Balay                 baij_a[jj]  = *value++;
540fef45726SSatish Balay               }
541fef45726SSatish Balay             }
542fef45726SSatish Balay           }
5430bdbc534SSatish Balay         } else {
5440bdbc534SSatish Balay           value = v + j*(stepval+bs)*bs + i*bs;
545fef45726SSatish Balay           if (addv == ADD_VALUES) {
546b4cc0f5aSSatish Balay             for (ii=0; ii<bs; ii++,value+=stepval,baij_a+=bs) {
5470bdbc534SSatish Balay               for (jj=0; jj<bs; jj++) {
548fef45726SSatish Balay                 baij_a[jj]  += *value++;
549fef45726SSatish Balay               }
550fef45726SSatish Balay             }
551fef45726SSatish Balay           } else {
552fef45726SSatish Balay             for (ii=0; ii<bs; ii++,value+=stepval,baij_a+=bs) {
553fef45726SSatish Balay               for (jj=0; jj<bs; jj++) {
554fef45726SSatish Balay                 baij_a[jj]  = *value++;
555fef45726SSatish Balay               }
556b4cc0f5aSSatish Balay             }
5570bdbc534SSatish Balay           }
5580bdbc534SSatish Balay         }
5590bdbc534SSatish Balay       }
5600bdbc534SSatish Balay     } else {
5610bdbc534SSatish Balay       if (!baij->donotstash) {
5620bdbc534SSatish Balay         if (roworiented) {
5638798bf22SSatish Balay           ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
5640bdbc534SSatish Balay         } else {
5658798bf22SSatish Balay           ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
5660bdbc534SSatish Balay         }
5670bdbc534SSatish Balay       }
5680bdbc534SSatish Balay     }
5690bdbc534SSatish Balay   }
5702515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
571187ce0cbSSatish Balay   baij->ht_total_ct = total_ct;
572187ce0cbSSatish Balay   baij->ht_insert_ct = insert_ct;
573187ce0cbSSatish Balay #endif
5740bdbc534SSatish Balay   PetscFunctionReturn(0);
5750bdbc534SSatish Balay }
576133cdb44SSatish Balay 
5774a2ae208SSatish Balay #undef __FUNCT__
5784a2ae208SSatish Balay #define __FUNCT__ "MatGetValues_MPIBAIJ"
579b24ad042SBarry Smith PetscErrorCode MatGetValues_MPIBAIJ(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[])
580d6de1c52SSatish Balay {
581d6de1c52SSatish Balay   Mat_MPIBAIJ    *baij = (Mat_MPIBAIJ*)mat->data;
5826849ba73SBarry Smith   PetscErrorCode ierr;
583d0f46423SBarry Smith   PetscInt       bs=mat->rmap->bs,i,j,bsrstart = mat->rmap->rstart,bsrend = mat->rmap->rend;
584d0f46423SBarry Smith   PetscInt       bscstart = mat->cmap->rstart,bscend = mat->cmap->rend,row,col,data;
585d6de1c52SSatish Balay 
586133cdb44SSatish Balay   PetscFunctionBegin;
587d6de1c52SSatish Balay   for (i=0; i<m; i++) {
58897e567efSBarry Smith     if (idxm[i] < 0) continue; /* SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %D",idxm[i]);*/
589d0f46423SBarry Smith     if (idxm[i] >= mat->rmap->N) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",idxm[i],mat->rmap->N-1);
590d6de1c52SSatish Balay     if (idxm[i] >= bsrstart && idxm[i] < bsrend) {
591d6de1c52SSatish Balay       row = idxm[i] - bsrstart;
592d6de1c52SSatish Balay       for (j=0; j<n; j++) {
59397e567efSBarry Smith         if (idxn[j] < 0) continue; /* SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Negative column: %D",idxn[j]); */
594d0f46423SBarry Smith         if (idxn[j] >= mat->cmap->N) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",idxn[j],mat->cmap->N-1);
595d6de1c52SSatish Balay         if (idxn[j] >= bscstart && idxn[j] < bscend){
596d6de1c52SSatish Balay           col = idxn[j] - bscstart;
59798dd23e9SBarry Smith           ierr = MatGetValues_SeqBAIJ(baij->A,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr);
598d64ed03dSBarry Smith         } else {
599905e6a2fSBarry Smith           if (!baij->colmap) {
600905e6a2fSBarry Smith             ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
601905e6a2fSBarry Smith           }
602aa482453SBarry Smith #if defined (PETSC_USE_CTABLE)
6030f5bd95cSBarry Smith           ierr = PetscTableFind(baij->colmap,idxn[j]/bs+1,&data);CHKERRQ(ierr);
604fa46199cSSatish Balay           data --;
60548e59246SSatish Balay #else
60648e59246SSatish Balay           data = baij->colmap[idxn[j]/bs]-1;
60748e59246SSatish Balay #endif
60848e59246SSatish Balay           if((data < 0) || (baij->garray[data/bs] != idxn[j]/bs)) *(v+i*n+j) = 0.0;
609d9d09a02SSatish Balay           else {
61048e59246SSatish Balay             col  = data + idxn[j]%bs;
61198dd23e9SBarry Smith             ierr = MatGetValues_SeqBAIJ(baij->B,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr);
612d6de1c52SSatish Balay           }
613d6de1c52SSatish Balay         }
614d6de1c52SSatish Balay       }
615d64ed03dSBarry Smith     } else {
61629bbc08cSBarry Smith       SETERRQ(PETSC_ERR_SUP,"Only local values currently supported");
617d6de1c52SSatish Balay     }
618d6de1c52SSatish Balay   }
6193a40ed3dSBarry Smith  PetscFunctionReturn(0);
620d6de1c52SSatish Balay }
621d6de1c52SSatish Balay 
6224a2ae208SSatish Balay #undef __FUNCT__
6234a2ae208SSatish Balay #define __FUNCT__ "MatNorm_MPIBAIJ"
624dfbe8321SBarry Smith PetscErrorCode MatNorm_MPIBAIJ(Mat mat,NormType type,PetscReal *nrm)
625d6de1c52SSatish Balay {
626d6de1c52SSatish Balay   Mat_MPIBAIJ    *baij = (Mat_MPIBAIJ*)mat->data;
627d6de1c52SSatish Balay   Mat_SeqBAIJ    *amat = (Mat_SeqBAIJ*)baij->A->data,*bmat = (Mat_SeqBAIJ*)baij->B->data;
628dfbe8321SBarry Smith   PetscErrorCode ierr;
629d0f46423SBarry Smith   PetscInt       i,j,bs2=baij->bs2,bs=baij->A->rmap->bs,nz,row,col;
630329f5518SBarry Smith   PetscReal      sum = 0.0;
6313eda8832SBarry Smith   MatScalar      *v;
632d6de1c52SSatish Balay 
633d64ed03dSBarry Smith   PetscFunctionBegin;
634d6de1c52SSatish Balay   if (baij->size == 1) {
635064f8208SBarry Smith     ierr =  MatNorm(baij->A,type,nrm);CHKERRQ(ierr);
636d6de1c52SSatish Balay   } else {
637d6de1c52SSatish Balay     if (type == NORM_FROBENIUS) {
638d6de1c52SSatish Balay       v = amat->a;
6398a62d963SHong Zhang       nz = amat->nz*bs2;
6408a62d963SHong Zhang       for (i=0; i<nz; i++) {
641aa482453SBarry Smith #if defined(PETSC_USE_COMPLEX)
642329f5518SBarry Smith         sum += PetscRealPart(PetscConj(*v)*(*v)); v++;
643d6de1c52SSatish Balay #else
644d6de1c52SSatish Balay         sum += (*v)*(*v); v++;
645d6de1c52SSatish Balay #endif
646d6de1c52SSatish Balay       }
647d6de1c52SSatish Balay       v = bmat->a;
6488a62d963SHong Zhang       nz = bmat->nz*bs2;
6498a62d963SHong Zhang       for (i=0; i<nz; i++) {
650aa482453SBarry Smith #if defined(PETSC_USE_COMPLEX)
651329f5518SBarry Smith         sum += PetscRealPart(PetscConj(*v)*(*v)); v++;
652d6de1c52SSatish Balay #else
653d6de1c52SSatish Balay         sum += (*v)*(*v); v++;
654d6de1c52SSatish Balay #endif
655d6de1c52SSatish Balay       }
6567adad957SLisandro Dalcin       ierr = MPI_Allreduce(&sum,nrm,1,MPIU_REAL,MPI_SUM,((PetscObject)mat)->comm);CHKERRQ(ierr);
657064f8208SBarry Smith       *nrm = sqrt(*nrm);
6588a62d963SHong Zhang     } else if (type == NORM_1) { /* max column sum */
6598a62d963SHong Zhang       PetscReal *tmp,*tmp2;
660899cda47SBarry Smith       PetscInt  *jj,*garray=baij->garray,cstart=baij->rstartbs;
661d0f46423SBarry Smith       ierr = PetscMalloc((2*mat->cmap->N+1)*sizeof(PetscReal),&tmp);CHKERRQ(ierr);
662d0f46423SBarry Smith       tmp2 = tmp + mat->cmap->N;
663d0f46423SBarry Smith       ierr = PetscMemzero(tmp,mat->cmap->N*sizeof(PetscReal));CHKERRQ(ierr);
6648a62d963SHong Zhang       v = amat->a; jj = amat->j;
6658a62d963SHong Zhang       for (i=0; i<amat->nz; i++) {
6668a62d963SHong Zhang         for (j=0; j<bs; j++){
6678a62d963SHong Zhang           col = bs*(cstart + *jj) + j; /* column index */
6688a62d963SHong Zhang           for (row=0; row<bs; row++){
6698a62d963SHong Zhang             tmp[col] += PetscAbsScalar(*v);  v++;
6708a62d963SHong Zhang           }
6718a62d963SHong Zhang         }
6728a62d963SHong Zhang         jj++;
6738a62d963SHong Zhang       }
6748a62d963SHong Zhang       v = bmat->a; jj = bmat->j;
6758a62d963SHong Zhang       for (i=0; i<bmat->nz; i++) {
6768a62d963SHong Zhang         for (j=0; j<bs; j++){
6778a62d963SHong Zhang           col = bs*garray[*jj] + j;
6788a62d963SHong Zhang           for (row=0; row<bs; row++){
6798a62d963SHong Zhang             tmp[col] += PetscAbsScalar(*v); v++;
6808a62d963SHong Zhang           }
6818a62d963SHong Zhang         }
6828a62d963SHong Zhang         jj++;
6838a62d963SHong Zhang       }
684d0f46423SBarry Smith       ierr = MPI_Allreduce(tmp,tmp2,mat->cmap->N,MPIU_REAL,MPI_SUM,((PetscObject)mat)->comm);CHKERRQ(ierr);
6858a62d963SHong Zhang       *nrm = 0.0;
686d0f46423SBarry Smith       for (j=0; j<mat->cmap->N; j++) {
6878a62d963SHong Zhang         if (tmp2[j] > *nrm) *nrm = tmp2[j];
6888a62d963SHong Zhang       }
6898a62d963SHong Zhang       ierr = PetscFree(tmp);CHKERRQ(ierr);
6908a62d963SHong Zhang     } else if (type == NORM_INFINITY) { /* max row sum */
691577dd1f9SKris Buschelman       PetscReal *sums;
692577dd1f9SKris Buschelman       ierr = PetscMalloc(bs*sizeof(PetscReal),&sums);CHKERRQ(ierr)
6938a62d963SHong Zhang       sum = 0.0;
6948a62d963SHong Zhang       for (j=0; j<amat->mbs; j++) {
6958a62d963SHong Zhang         for (row=0; row<bs; row++) sums[row] = 0.0;
6968a62d963SHong Zhang         v = amat->a + bs2*amat->i[j];
6978a62d963SHong Zhang         nz = amat->i[j+1]-amat->i[j];
6988a62d963SHong Zhang         for (i=0; i<nz; i++) {
6998a62d963SHong Zhang           for (col=0; col<bs; col++){
7008a62d963SHong Zhang             for (row=0; row<bs; row++){
7018a62d963SHong Zhang               sums[row] += PetscAbsScalar(*v); v++;
7028a62d963SHong Zhang             }
7038a62d963SHong Zhang           }
7048a62d963SHong Zhang         }
7058a62d963SHong Zhang         v = bmat->a + bs2*bmat->i[j];
7068a62d963SHong Zhang         nz = bmat->i[j+1]-bmat->i[j];
7078a62d963SHong Zhang         for (i=0; i<nz; i++) {
7088a62d963SHong Zhang           for (col=0; col<bs; col++){
7098a62d963SHong Zhang             for (row=0; row<bs; row++){
7108a62d963SHong Zhang               sums[row] += PetscAbsScalar(*v); v++;
7118a62d963SHong Zhang             }
7128a62d963SHong Zhang           }
7138a62d963SHong Zhang         }
7148a62d963SHong Zhang         for (row=0; row<bs; row++){
7158a62d963SHong Zhang           if (sums[row] > sum) sum = sums[row];
7168a62d963SHong Zhang         }
7178a62d963SHong Zhang       }
7187adad957SLisandro Dalcin       ierr = MPI_Allreduce(&sum,nrm,1,MPIU_REAL,MPI_MAX,((PetscObject)mat)->comm);CHKERRQ(ierr);
719577dd1f9SKris Buschelman       ierr = PetscFree(sums);CHKERRQ(ierr);
720d64ed03dSBarry Smith     } else {
72129bbc08cSBarry Smith       SETERRQ(PETSC_ERR_SUP,"No support for this norm yet");
722d6de1c52SSatish Balay     }
723d64ed03dSBarry Smith   }
7243a40ed3dSBarry Smith   PetscFunctionReturn(0);
725d6de1c52SSatish Balay }
72657b952d6SSatish Balay 
727fef45726SSatish Balay /*
728fef45726SSatish Balay   Creates the hash table, and sets the table
729fef45726SSatish Balay   This table is created only once.
730fef45726SSatish Balay   If new entried need to be added to the matrix
731fef45726SSatish Balay   then the hash table has to be destroyed and
732fef45726SSatish Balay   recreated.
733fef45726SSatish Balay */
7344a2ae208SSatish Balay #undef __FUNCT__
7354a2ae208SSatish Balay #define __FUNCT__ "MatCreateHashTable_MPIBAIJ_Private"
736dfbe8321SBarry Smith PetscErrorCode MatCreateHashTable_MPIBAIJ_Private(Mat mat,PetscReal factor)
737596b8d2eSBarry Smith {
738596b8d2eSBarry Smith   Mat_MPIBAIJ    *baij = (Mat_MPIBAIJ*)mat->data;
739596b8d2eSBarry Smith   Mat            A = baij->A,B=baij->B;
740596b8d2eSBarry Smith   Mat_SeqBAIJ    *a=(Mat_SeqBAIJ *)A->data,*b=(Mat_SeqBAIJ *)B->data;
741b24ad042SBarry Smith   PetscInt       i,j,k,nz=a->nz+b->nz,h1,*ai=a->i,*aj=a->j,*bi=b->i,*bj=b->j;
7426849ba73SBarry Smith   PetscErrorCode ierr;
743899cda47SBarry Smith   PetscInt       size,bs2=baij->bs2,rstart=baij->rstartbs;
744899cda47SBarry Smith   PetscInt       cstart=baij->cstartbs,*garray=baij->garray,row,col,Nbs=baij->Nbs;
745b24ad042SBarry Smith   PetscInt       *HT,key;
7463eda8832SBarry Smith   MatScalar      **HD;
747329f5518SBarry Smith   PetscReal      tmp;
7486cf91177SBarry Smith #if defined(PETSC_USE_INFO)
749b24ad042SBarry Smith   PetscInt       ct=0,max=0;
7504a15367fSSatish Balay #endif
751fef45726SSatish Balay 
752d64ed03dSBarry Smith   PetscFunctionBegin;
753b24ad042SBarry Smith   baij->ht_size=(PetscInt)(factor*nz);
7540bdbc534SSatish Balay   size = baij->ht_size;
755fef45726SSatish Balay 
7560bdbc534SSatish Balay   if (baij->ht) {
7570bdbc534SSatish Balay     PetscFunctionReturn(0);
758596b8d2eSBarry Smith   }
7590bdbc534SSatish Balay 
760fef45726SSatish Balay   /* Allocate Memory for Hash Table */
761b24ad042SBarry Smith   ierr     = PetscMalloc((size)*(sizeof(PetscInt)+sizeof(MatScalar*))+1,&baij->hd);CHKERRQ(ierr);
762b24ad042SBarry Smith   baij->ht = (PetscInt*)(baij->hd + size);
763b9e4cc15SSatish Balay   HD       = baij->hd;
764a07cd24cSSatish Balay   HT       = baij->ht;
765b9e4cc15SSatish Balay 
766b9e4cc15SSatish Balay 
767b24ad042SBarry Smith   ierr = PetscMemzero(HD,size*(sizeof(PetscInt)+sizeof(PetscScalar*)));CHKERRQ(ierr);
7680bdbc534SSatish Balay 
769596b8d2eSBarry Smith 
770596b8d2eSBarry Smith   /* Loop Over A */
7710bdbc534SSatish Balay   for (i=0; i<a->mbs; i++) {
772596b8d2eSBarry Smith     for (j=ai[i]; j<ai[i+1]; j++) {
7730bdbc534SSatish Balay       row = i+rstart;
7740bdbc534SSatish Balay       col = aj[j]+cstart;
775596b8d2eSBarry Smith 
776187ce0cbSSatish Balay       key = row*Nbs + col + 1;
777c2760754SSatish Balay       h1  = HASH(size,key,tmp);
7780bdbc534SSatish Balay       for (k=0; k<size; k++){
779958c9bccSBarry Smith         if (!HT[(h1+k)%size]) {
7800bdbc534SSatish Balay           HT[(h1+k)%size] = key;
7810bdbc534SSatish Balay           HD[(h1+k)%size] = a->a + j*bs2;
782596b8d2eSBarry Smith           break;
7836cf91177SBarry Smith #if defined(PETSC_USE_INFO)
784187ce0cbSSatish Balay         } else {
785187ce0cbSSatish Balay           ct++;
786187ce0cbSSatish Balay #endif
787596b8d2eSBarry Smith         }
788187ce0cbSSatish Balay       }
7896cf91177SBarry Smith #if defined(PETSC_USE_INFO)
790187ce0cbSSatish Balay       if (k> max) max = k;
791187ce0cbSSatish Balay #endif
792596b8d2eSBarry Smith     }
793596b8d2eSBarry Smith   }
794596b8d2eSBarry Smith   /* Loop Over B */
7950bdbc534SSatish Balay   for (i=0; i<b->mbs; i++) {
796596b8d2eSBarry Smith     for (j=bi[i]; j<bi[i+1]; j++) {
7970bdbc534SSatish Balay       row = i+rstart;
7980bdbc534SSatish Balay       col = garray[bj[j]];
799187ce0cbSSatish Balay       key = row*Nbs + col + 1;
800c2760754SSatish Balay       h1  = HASH(size,key,tmp);
8010bdbc534SSatish Balay       for (k=0; k<size; k++){
802958c9bccSBarry Smith         if (!HT[(h1+k)%size]) {
8030bdbc534SSatish Balay           HT[(h1+k)%size] = key;
8040bdbc534SSatish Balay           HD[(h1+k)%size] = b->a + j*bs2;
805596b8d2eSBarry Smith           break;
8066cf91177SBarry Smith #if defined(PETSC_USE_INFO)
807187ce0cbSSatish Balay         } else {
808187ce0cbSSatish Balay           ct++;
809187ce0cbSSatish Balay #endif
810596b8d2eSBarry Smith         }
811187ce0cbSSatish Balay       }
8126cf91177SBarry Smith #if defined(PETSC_USE_INFO)
813187ce0cbSSatish Balay       if (k> max) max = k;
814187ce0cbSSatish Balay #endif
815596b8d2eSBarry Smith     }
816596b8d2eSBarry Smith   }
817596b8d2eSBarry Smith 
818596b8d2eSBarry Smith   /* Print Summary */
8196cf91177SBarry Smith #if defined(PETSC_USE_INFO)
820c38d4ed2SBarry Smith   for (i=0,j=0; i<size; i++) {
821596b8d2eSBarry Smith     if (HT[i]) {j++;}
822c38d4ed2SBarry Smith   }
8231e2582c4SBarry Smith   ierr = PetscInfo2(mat,"Average Search = %5.2f,max search = %D\n",(!j)? 0.0:((PetscReal)(ct+j))/j,max);CHKERRQ(ierr);
824187ce0cbSSatish Balay #endif
8253a40ed3dSBarry Smith   PetscFunctionReturn(0);
826596b8d2eSBarry Smith }
82757b952d6SSatish Balay 
8284a2ae208SSatish Balay #undef __FUNCT__
8294a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyBegin_MPIBAIJ"
830dfbe8321SBarry Smith PetscErrorCode MatAssemblyBegin_MPIBAIJ(Mat mat,MatAssemblyType mode)
831bbb85fb3SSatish Balay {
832bbb85fb3SSatish Balay   Mat_MPIBAIJ    *baij = (Mat_MPIBAIJ*)mat->data;
833dfbe8321SBarry Smith   PetscErrorCode ierr;
834b24ad042SBarry Smith   PetscInt       nstash,reallocs;
835bbb85fb3SSatish Balay   InsertMode     addv;
836bbb85fb3SSatish Balay 
837bbb85fb3SSatish Balay   PetscFunctionBegin;
838bbb85fb3SSatish Balay   if (baij->donotstash) {
839bbb85fb3SSatish Balay     PetscFunctionReturn(0);
840bbb85fb3SSatish Balay   }
841bbb85fb3SSatish Balay 
842bbb85fb3SSatish Balay   /* make sure all processors are either in INSERTMODE or ADDMODE */
8437adad957SLisandro Dalcin   ierr = MPI_Allreduce(&mat->insertmode,&addv,1,MPI_INT,MPI_BOR,((PetscObject)mat)->comm);CHKERRQ(ierr);
844bbb85fb3SSatish Balay   if (addv == (ADD_VALUES|INSERT_VALUES)) {
84529bbc08cSBarry Smith     SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Some processors inserted others added");
846bbb85fb3SSatish Balay   }
847bbb85fb3SSatish Balay   mat->insertmode = addv; /* in case this processor had no cache */
848bbb85fb3SSatish Balay 
849d0f46423SBarry Smith   ierr = MatStashScatterBegin_Private(mat,&mat->stash,mat->rmap->range);CHKERRQ(ierr);
8501e2582c4SBarry Smith   ierr = MatStashScatterBegin_Private(mat,&mat->bstash,baij->rangebs);CHKERRQ(ierr);
8518798bf22SSatish Balay   ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr);
8521e2582c4SBarry Smith   ierr = PetscInfo2(mat,"Stash has %D entries,uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr);
85346680499SSatish Balay   ierr = MatStashGetInfo_Private(&mat->bstash,&nstash,&reallocs);CHKERRQ(ierr);
8541e2582c4SBarry Smith   ierr = PetscInfo2(mat,"Block-Stash has %D entries, uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr);
855bbb85fb3SSatish Balay   PetscFunctionReturn(0);
856bbb85fb3SSatish Balay }
857bbb85fb3SSatish Balay 
8584a2ae208SSatish Balay #undef __FUNCT__
8594a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyEnd_MPIBAIJ"
860dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_MPIBAIJ(Mat mat,MatAssemblyType mode)
861bbb85fb3SSatish Balay {
862bbb85fb3SSatish Balay   Mat_MPIBAIJ    *baij=(Mat_MPIBAIJ*)mat->data;
86391c97fd4SSatish Balay   Mat_SeqBAIJ    *a=(Mat_SeqBAIJ*)baij->A->data;
8646849ba73SBarry Smith   PetscErrorCode ierr;
865b24ad042SBarry Smith   PetscInt       i,j,rstart,ncols,flg,bs2=baij->bs2;
866e44c0bd4SBarry Smith   PetscInt       *row,*col;
867e44c0bd4SBarry Smith   PetscTruth     r1,r2,r3,other_disassembled;
8683eda8832SBarry Smith   MatScalar      *val;
869bbb85fb3SSatish Balay   InsertMode     addv = mat->insertmode;
870b24ad042SBarry Smith   PetscMPIInt    n;
871bbb85fb3SSatish Balay 
87291c97fd4SSatish Balay   /* do not use 'b=(Mat_SeqBAIJ*)baij->B->data' as B can be reset in disassembly */
873bbb85fb3SSatish Balay   PetscFunctionBegin;
874bbb85fb3SSatish Balay   if (!baij->donotstash) {
875a2d1c673SSatish Balay     while (1) {
8768798bf22SSatish Balay       ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr);
877a2d1c673SSatish Balay       if (!flg) break;
878a2d1c673SSatish Balay 
879bbb85fb3SSatish Balay       for (i=0; i<n;) {
880bbb85fb3SSatish Balay         /* Now identify the consecutive vals belonging to the same row */
881bbb85fb3SSatish Balay         for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; }
882bbb85fb3SSatish Balay         if (j < n) ncols = j-i;
883bbb85fb3SSatish Balay         else       ncols = n-i;
884bbb85fb3SSatish Balay         /* Now assemble all these values with a single function call */
88597e5c40aSBarry Smith         ierr = MatSetValues_MPIBAIJ(mat,1,row+i,ncols,col+i,val+i,addv);CHKERRQ(ierr);
886bbb85fb3SSatish Balay         i = j;
887bbb85fb3SSatish Balay       }
888bbb85fb3SSatish Balay     }
8898798bf22SSatish Balay     ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr);
890a2d1c673SSatish Balay     /* Now process the block-stash. Since the values are stashed column-oriented,
891a2d1c673SSatish Balay        set the roworiented flag to column oriented, and after MatSetValues()
892a2d1c673SSatish Balay        restore the original flags */
893a2d1c673SSatish Balay     r1 = baij->roworiented;
894a2d1c673SSatish Balay     r2 = a->roworiented;
89591c97fd4SSatish Balay     r3 = ((Mat_SeqBAIJ*)baij->B->data)->roworiented;
8967c922b88SBarry Smith     baij->roworiented = PETSC_FALSE;
8977c922b88SBarry Smith     a->roworiented    = PETSC_FALSE;
89891c97fd4SSatish Balay     (((Mat_SeqBAIJ*)baij->B->data))->roworiented    = PETSC_FALSE; /* b->roworiented */
899a2d1c673SSatish Balay     while (1) {
9008798bf22SSatish Balay       ierr = MatStashScatterGetMesg_Private(&mat->bstash,&n,&row,&col,&val,&flg);CHKERRQ(ierr);
901a2d1c673SSatish Balay       if (!flg) break;
902a2d1c673SSatish Balay 
903a2d1c673SSatish Balay       for (i=0; i<n;) {
904a2d1c673SSatish Balay         /* Now identify the consecutive vals belonging to the same row */
905a2d1c673SSatish Balay         for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; }
906a2d1c673SSatish Balay         if (j < n) ncols = j-i;
907a2d1c673SSatish Balay         else       ncols = n-i;
90897e5c40aSBarry Smith         ierr = MatSetValuesBlocked_MPIBAIJ(mat,1,row+i,ncols,col+i,val+i*bs2,addv);CHKERRQ(ierr);
909a2d1c673SSatish Balay         i = j;
910a2d1c673SSatish Balay       }
911a2d1c673SSatish Balay     }
9128798bf22SSatish Balay     ierr = MatStashScatterEnd_Private(&mat->bstash);CHKERRQ(ierr);
913a2d1c673SSatish Balay     baij->roworiented = r1;
914a2d1c673SSatish Balay     a->roworiented    = r2;
91591c97fd4SSatish Balay     ((Mat_SeqBAIJ*)baij->B->data)->roworiented    = r3; /* b->roworiented */
916bbb85fb3SSatish Balay   }
917bbb85fb3SSatish Balay 
918bbb85fb3SSatish Balay   ierr = MatAssemblyBegin(baij->A,mode);CHKERRQ(ierr);
919bbb85fb3SSatish Balay   ierr = MatAssemblyEnd(baij->A,mode);CHKERRQ(ierr);
920bbb85fb3SSatish Balay 
921bbb85fb3SSatish Balay   /* determine if any processor has disassembled, if so we must
922bbb85fb3SSatish Balay      also disassemble ourselfs, in order that we may reassemble. */
923bbb85fb3SSatish Balay   /*
924bbb85fb3SSatish Balay      if nonzero structure of submatrix B cannot change then we know that
925bbb85fb3SSatish Balay      no processor disassembled thus we can skip this stuff
926bbb85fb3SSatish Balay   */
927bbb85fb3SSatish Balay   if (!((Mat_SeqBAIJ*)baij->B->data)->nonew)  {
9287adad957SLisandro Dalcin     ierr = MPI_Allreduce(&mat->was_assembled,&other_disassembled,1,MPI_INT,MPI_PROD,((PetscObject)mat)->comm);CHKERRQ(ierr);
929bbb85fb3SSatish Balay     if (mat->was_assembled && !other_disassembled) {
930bbb85fb3SSatish Balay       ierr = DisAssemble_MPIBAIJ(mat);CHKERRQ(ierr);
931bbb85fb3SSatish Balay     }
932bbb85fb3SSatish Balay   }
933bbb85fb3SSatish Balay 
934bbb85fb3SSatish Balay   if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) {
935bbb85fb3SSatish Balay     ierr = MatSetUpMultiply_MPIBAIJ(mat);CHKERRQ(ierr);
936bbb85fb3SSatish Balay   }
93791c97fd4SSatish Balay   ((Mat_SeqBAIJ*)baij->B->data)->compressedrow.use = PETSC_TRUE; /* b->compressedrow.use */
938bbb85fb3SSatish Balay   ierr = MatAssemblyBegin(baij->B,mode);CHKERRQ(ierr);
939bbb85fb3SSatish Balay   ierr = MatAssemblyEnd(baij->B,mode);CHKERRQ(ierr);
940bbb85fb3SSatish Balay 
9416cf91177SBarry Smith #if defined(PETSC_USE_INFO)
942bbb85fb3SSatish Balay   if (baij->ht && mode== MAT_FINAL_ASSEMBLY) {
9431e2582c4SBarry Smith     ierr = PetscInfo1(mat,"Average Hash Table Search in MatSetValues = %5.2f\n",((PetscReal)baij->ht_total_ct)/baij->ht_insert_ct);CHKERRQ(ierr);
944bbb85fb3SSatish Balay     baij->ht_total_ct  = 0;
945bbb85fb3SSatish Balay     baij->ht_insert_ct = 0;
946bbb85fb3SSatish Balay   }
947bbb85fb3SSatish Balay #endif
948bbb85fb3SSatish Balay   if (baij->ht_flag && !baij->ht && mode == MAT_FINAL_ASSEMBLY) {
949bbb85fb3SSatish Balay     ierr = MatCreateHashTable_MPIBAIJ_Private(mat,baij->ht_fact);CHKERRQ(ierr);
950bbb85fb3SSatish Balay     mat->ops->setvalues        = MatSetValues_MPIBAIJ_HT;
951bbb85fb3SSatish Balay     mat->ops->setvaluesblocked = MatSetValuesBlocked_MPIBAIJ_HT;
952bbb85fb3SSatish Balay   }
953bbb85fb3SSatish Balay 
954606d414cSSatish Balay   ierr = PetscFree(baij->rowvalues);CHKERRQ(ierr);
955606d414cSSatish Balay   baij->rowvalues = 0;
956bbb85fb3SSatish Balay   PetscFunctionReturn(0);
957bbb85fb3SSatish Balay }
95857b952d6SSatish Balay 
9594a2ae208SSatish Balay #undef __FUNCT__
9604a2ae208SSatish Balay #define __FUNCT__ "MatView_MPIBAIJ_ASCIIorDraworSocket"
9616849ba73SBarry Smith static PetscErrorCode MatView_MPIBAIJ_ASCIIorDraworSocket(Mat mat,PetscViewer viewer)
96257b952d6SSatish Balay {
96357b952d6SSatish Balay   Mat_MPIBAIJ       *baij = (Mat_MPIBAIJ*)mat->data;
964dfbe8321SBarry Smith   PetscErrorCode    ierr;
965b24ad042SBarry Smith   PetscMPIInt       size = baij->size,rank = baij->rank;
966d0f46423SBarry Smith   PetscInt          bs = mat->rmap->bs;
96732077d6dSBarry Smith   PetscTruth        iascii,isdraw;
968b0a32e0cSBarry Smith   PetscViewer       sviewer;
969f3ef73ceSBarry Smith   PetscViewerFormat format;
97057b952d6SSatish Balay 
971d64ed03dSBarry Smith   PetscFunctionBegin;
97232077d6dSBarry Smith   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&iascii);CHKERRQ(ierr);
973fb9695e5SSatish Balay   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr);
97432077d6dSBarry Smith   if (iascii) {
975b0a32e0cSBarry Smith     ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr);
976456192e2SBarry Smith     if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) {
9774e220ebcSLois Curfman McInnes       MatInfo info;
9787adad957SLisandro Dalcin       ierr = MPI_Comm_rank(((PetscObject)mat)->comm,&rank);CHKERRQ(ierr);
979d41123aaSBarry Smith       ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr);
98077431f27SBarry Smith       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Local rows %D nz %D nz alloced %D bs %D mem %D\n",
981d0f46423SBarry Smith               rank,mat->rmap->N,(PetscInt)info.nz_used*bs,(PetscInt)info.nz_allocated*bs,
982d0f46423SBarry Smith               mat->rmap->bs,(PetscInt)info.memory);CHKERRQ(ierr);
983d132466eSBarry Smith       ierr = MatGetInfo(baij->A,MAT_LOCAL,&info);CHKERRQ(ierr);
98477431f27SBarry Smith       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] on-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used*bs);CHKERRQ(ierr);
985d132466eSBarry Smith       ierr = MatGetInfo(baij->B,MAT_LOCAL,&info);CHKERRQ(ierr);
98677431f27SBarry Smith       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] off-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used*bs);CHKERRQ(ierr);
987b0a32e0cSBarry Smith       ierr = PetscViewerFlush(viewer);CHKERRQ(ierr);
98807d81ca4SBarry Smith       ierr = PetscViewerASCIIPrintf(viewer,"Information on VecScatter used in matrix-vector product: \n");CHKERRQ(ierr);
98957b952d6SSatish Balay       ierr = VecScatterView(baij->Mvctx,viewer);CHKERRQ(ierr);
9903a40ed3dSBarry Smith       PetscFunctionReturn(0);
991fb9695e5SSatish Balay     } else if (format == PETSC_VIEWER_ASCII_INFO) {
99277431f27SBarry Smith       ierr = PetscViewerASCIIPrintf(viewer,"  block size is %D\n",bs);CHKERRQ(ierr);
9933a40ed3dSBarry Smith       PetscFunctionReturn(0);
99404929863SHong Zhang     } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) {
99504929863SHong Zhang       PetscFunctionReturn(0);
99657b952d6SSatish Balay     }
99757b952d6SSatish Balay   }
99857b952d6SSatish Balay 
9990f5bd95cSBarry Smith   if (isdraw) {
1000b0a32e0cSBarry Smith     PetscDraw       draw;
100157b952d6SSatish Balay     PetscTruth isnull;
1002b0a32e0cSBarry Smith     ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr);
1003b0a32e0cSBarry Smith     ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); if (isnull) PetscFunctionReturn(0);
100457b952d6SSatish Balay   }
100557b952d6SSatish Balay 
100657b952d6SSatish Balay   if (size == 1) {
10077adad957SLisandro Dalcin     ierr = PetscObjectSetName((PetscObject)baij->A,((PetscObject)mat)->name);CHKERRQ(ierr);
100857b952d6SSatish Balay     ierr = MatView(baij->A,viewer);CHKERRQ(ierr);
1009d64ed03dSBarry Smith   } else {
101057b952d6SSatish Balay     /* assemble the entire matrix onto first processor. */
101157b952d6SSatish Balay     Mat         A;
101257b952d6SSatish Balay     Mat_SeqBAIJ *Aloc;
1013d0f46423SBarry Smith     PetscInt    M = mat->rmap->N,N = mat->cmap->N,*ai,*aj,col,i,j,k,*rvals,mbs = baij->mbs;
10143eda8832SBarry Smith     MatScalar   *a;
101557b952d6SSatish Balay 
1016f204ca49SKris Buschelman     /* Here we are creating a temporary matrix, so will assume MPIBAIJ is acceptable */
1017f204ca49SKris Buschelman     /* Perhaps this should be the type of mat? */
10187adad957SLisandro Dalcin     ierr = MatCreate(((PetscObject)mat)->comm,&A);CHKERRQ(ierr);
101957b952d6SSatish Balay     if (!rank) {
1020f69a0ea3SMatthew Knepley       ierr = MatSetSizes(A,M,N,M,N);CHKERRQ(ierr);
1021d64ed03dSBarry Smith     } else {
1022f69a0ea3SMatthew Knepley       ierr = MatSetSizes(A,0,0,M,N);CHKERRQ(ierr);
102357b952d6SSatish Balay     }
1024f204ca49SKris Buschelman     ierr = MatSetType(A,MATMPIBAIJ);CHKERRQ(ierr);
1025d0f46423SBarry Smith     ierr = MatMPIBAIJSetPreallocation(A,mat->rmap->bs,0,PETSC_NULL,0,PETSC_NULL);CHKERRQ(ierr);
102652e6d16bSBarry Smith     ierr = PetscLogObjectParent(mat,A);CHKERRQ(ierr);
102757b952d6SSatish Balay 
102857b952d6SSatish Balay     /* copy over the A part */
102957b952d6SSatish Balay     Aloc = (Mat_SeqBAIJ*)baij->A->data;
103057b952d6SSatish Balay     ai   = Aloc->i; aj = Aloc->j; a = Aloc->a;
1031b24ad042SBarry Smith     ierr = PetscMalloc(bs*sizeof(PetscInt),&rvals);CHKERRQ(ierr);
103257b952d6SSatish Balay 
103357b952d6SSatish Balay     for (i=0; i<mbs; i++) {
1034899cda47SBarry Smith       rvals[0] = bs*(baij->rstartbs + i);
103557b952d6SSatish Balay       for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; }
103657b952d6SSatish Balay       for (j=ai[i]; j<ai[i+1]; j++) {
1037899cda47SBarry Smith         col = (baij->cstartbs+aj[j])*bs;
103857b952d6SSatish Balay         for (k=0; k<bs; k++) {
103997e5c40aSBarry Smith           ierr = MatSetValues_MPIBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr);
1040cee3aa6bSSatish Balay           col++; a += bs;
104157b952d6SSatish Balay         }
104257b952d6SSatish Balay       }
104357b952d6SSatish Balay     }
104457b952d6SSatish Balay     /* copy over the B part */
104557b952d6SSatish Balay     Aloc = (Mat_SeqBAIJ*)baij->B->data;
104657b952d6SSatish Balay     ai = Aloc->i; aj = Aloc->j; a = Aloc->a;
104757b952d6SSatish Balay     for (i=0; i<mbs; i++) {
1048899cda47SBarry Smith       rvals[0] = bs*(baij->rstartbs + i);
104957b952d6SSatish Balay       for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; }
105057b952d6SSatish Balay       for (j=ai[i]; j<ai[i+1]; j++) {
105157b952d6SSatish Balay         col = baij->garray[aj[j]]*bs;
105257b952d6SSatish Balay         for (k=0; k<bs; k++) {
105397e5c40aSBarry Smith           ierr = MatSetValues_MPIBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr);
1054cee3aa6bSSatish Balay           col++; a += bs;
105557b952d6SSatish Balay         }
105657b952d6SSatish Balay       }
105757b952d6SSatish Balay     }
1058606d414cSSatish Balay     ierr = PetscFree(rvals);CHKERRQ(ierr);
10596d4a8577SBarry Smith     ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
10606d4a8577SBarry Smith     ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
106155843e3eSBarry Smith     /*
106255843e3eSBarry Smith        Everyone has to call to draw the matrix since the graphics waits are
1063b0a32e0cSBarry Smith        synchronized across all processors that share the PetscDraw object
106455843e3eSBarry Smith     */
1065b0a32e0cSBarry Smith     ierr = PetscViewerGetSingleton(viewer,&sviewer);CHKERRQ(ierr);
1066f14a1c24SBarry Smith     if (!rank) {
10677adad957SLisandro Dalcin       ierr = PetscObjectSetName((PetscObject)((Mat_MPIBAIJ*)(A->data))->A,((PetscObject)mat)->name);CHKERRQ(ierr);
10686831982aSBarry Smith       ierr = MatView(((Mat_MPIBAIJ*)(A->data))->A,sviewer);CHKERRQ(ierr);
106957b952d6SSatish Balay     }
1070b0a32e0cSBarry Smith     ierr = PetscViewerRestoreSingleton(viewer,&sviewer);CHKERRQ(ierr);
107157b952d6SSatish Balay     ierr = MatDestroy(A);CHKERRQ(ierr);
107257b952d6SSatish Balay   }
10733a40ed3dSBarry Smith   PetscFunctionReturn(0);
107457b952d6SSatish Balay }
107557b952d6SSatish Balay 
10764a2ae208SSatish Balay #undef __FUNCT__
10774a2ae208SSatish Balay #define __FUNCT__ "MatView_MPIBAIJ"
1078dfbe8321SBarry Smith PetscErrorCode MatView_MPIBAIJ(Mat mat,PetscViewer viewer)
107957b952d6SSatish Balay {
1080dfbe8321SBarry Smith   PetscErrorCode ierr;
108132077d6dSBarry Smith   PetscTruth     iascii,isdraw,issocket,isbinary;
108257b952d6SSatish Balay 
1083d64ed03dSBarry Smith   PetscFunctionBegin;
108432077d6dSBarry Smith   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&iascii);CHKERRQ(ierr);
1085fb9695e5SSatish Balay   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr);
1086b0a32e0cSBarry Smith   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_SOCKET,&issocket);CHKERRQ(ierr);
1087fb9695e5SSatish Balay   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_BINARY,&isbinary);CHKERRQ(ierr);
108832077d6dSBarry Smith   if (iascii || isdraw || issocket || isbinary) {
10897b2a1423SBarry Smith     ierr = MatView_MPIBAIJ_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr);
10905cd90555SBarry Smith   } else {
109179a5c55eSBarry Smith     SETERRQ1(PETSC_ERR_SUP,"Viewer type %s not supported by MPIBAIJ matrices",((PetscObject)viewer)->type_name);
109257b952d6SSatish Balay   }
10933a40ed3dSBarry Smith   PetscFunctionReturn(0);
109457b952d6SSatish Balay }
109557b952d6SSatish Balay 
10964a2ae208SSatish Balay #undef __FUNCT__
10974a2ae208SSatish Balay #define __FUNCT__ "MatDestroy_MPIBAIJ"
1098dfbe8321SBarry Smith PetscErrorCode MatDestroy_MPIBAIJ(Mat mat)
109979bdfe76SSatish Balay {
110079bdfe76SSatish Balay   Mat_MPIBAIJ    *baij = (Mat_MPIBAIJ*)mat->data;
1101dfbe8321SBarry Smith   PetscErrorCode ierr;
110279bdfe76SSatish Balay 
1103d64ed03dSBarry Smith   PetscFunctionBegin;
1104aa482453SBarry Smith #if defined(PETSC_USE_LOG)
1105d0f46423SBarry Smith   PetscLogObjectState((PetscObject)mat,"Rows=%D,Cols=%D",mat->rmap->N,mat->cmap->N);
110679bdfe76SSatish Balay #endif
11078798bf22SSatish Balay   ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr);
11088798bf22SSatish Balay   ierr = MatStashDestroy_Private(&mat->bstash);CHKERRQ(ierr);
110979bdfe76SSatish Balay   ierr = MatDestroy(baij->A);CHKERRQ(ierr);
111079bdfe76SSatish Balay   ierr = MatDestroy(baij->B);CHKERRQ(ierr);
1111aa482453SBarry Smith #if defined (PETSC_USE_CTABLE)
11129c666560SBarry Smith   if (baij->colmap) {ierr = PetscTableDestroy(baij->colmap);CHKERRQ(ierr);}
111348e59246SSatish Balay #else
111405b42c5fSBarry Smith   ierr = PetscFree(baij->colmap);CHKERRQ(ierr);
111548e59246SSatish Balay #endif
111605b42c5fSBarry Smith   ierr = PetscFree(baij->garray);CHKERRQ(ierr);
1117606d414cSSatish Balay   if (baij->lvec)   {ierr = VecDestroy(baij->lvec);CHKERRQ(ierr);}
1118606d414cSSatish Balay   if (baij->Mvctx)  {ierr = VecScatterDestroy(baij->Mvctx);CHKERRQ(ierr);}
111905b42c5fSBarry Smith   ierr = PetscFree(baij->rowvalues);CHKERRQ(ierr);
112005b42c5fSBarry Smith   ierr = PetscFree(baij->barray);CHKERRQ(ierr);
112105b42c5fSBarry Smith   ierr = PetscFree(baij->hd);CHKERRQ(ierr);
1122899cda47SBarry Smith   ierr = PetscFree(baij->rangebs);CHKERRQ(ierr);
1123606d414cSSatish Balay   ierr = PetscFree(baij);CHKERRQ(ierr);
1124901853e0SKris Buschelman 
1125dbd8c25aSHong Zhang   ierr = PetscObjectChangeTypeName((PetscObject)mat,0);CHKERRQ(ierr);
1126901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatStoreValues_C","",PETSC_NULL);CHKERRQ(ierr);
1127901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatRetrieveValues_C","",PETSC_NULL);CHKERRQ(ierr);
1128901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatGetDiagonalBlock_C","",PETSC_NULL);CHKERRQ(ierr);
1129901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPIBAIJSetPreallocation_C","",PETSC_NULL);CHKERRQ(ierr);
1130aac34f13SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPIBAIJSetPreallocationCSR_C","",PETSC_NULL);CHKERRQ(ierr);
1131901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDiagonalScaleLocal_C","",PETSC_NULL);CHKERRQ(ierr);
1132901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatSetHashTableFactor_C","",PETSC_NULL);CHKERRQ(ierr);
11333a40ed3dSBarry Smith   PetscFunctionReturn(0);
113479bdfe76SSatish Balay }
113579bdfe76SSatish Balay 
11364a2ae208SSatish Balay #undef __FUNCT__
11374a2ae208SSatish Balay #define __FUNCT__ "MatMult_MPIBAIJ"
1138dfbe8321SBarry Smith PetscErrorCode MatMult_MPIBAIJ(Mat A,Vec xx,Vec yy)
1139cee3aa6bSSatish Balay {
1140cee3aa6bSSatish Balay   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)A->data;
1141dfbe8321SBarry Smith   PetscErrorCode ierr;
1142b24ad042SBarry Smith   PetscInt       nt;
1143cee3aa6bSSatish Balay 
1144d64ed03dSBarry Smith   PetscFunctionBegin;
1145e1311b90SBarry Smith   ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr);
1146d0f46423SBarry Smith   if (nt != A->cmap->n) {
114729bbc08cSBarry Smith     SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx");
114847b4a8eaSLois Curfman McInnes   }
1149e1311b90SBarry Smith   ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr);
1150d0f46423SBarry Smith   if (nt != A->rmap->n) {
115129bbc08cSBarry Smith     SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible parition of A and yy");
115247b4a8eaSLois Curfman McInnes   }
1153ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1154f830108cSBarry Smith   ierr = (*a->A->ops->mult)(a->A,xx,yy);CHKERRQ(ierr);
1155ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1156f830108cSBarry Smith   ierr = (*a->B->ops->multadd)(a->B,a->lvec,yy,yy);CHKERRQ(ierr);
11573a40ed3dSBarry Smith   PetscFunctionReturn(0);
1158cee3aa6bSSatish Balay }
1159cee3aa6bSSatish Balay 
11604a2ae208SSatish Balay #undef __FUNCT__
11614a2ae208SSatish Balay #define __FUNCT__ "MatMultAdd_MPIBAIJ"
1162dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPIBAIJ(Mat A,Vec xx,Vec yy,Vec zz)
1163cee3aa6bSSatish Balay {
1164cee3aa6bSSatish Balay   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)A->data;
1165dfbe8321SBarry Smith   PetscErrorCode ierr;
1166d64ed03dSBarry Smith 
1167d64ed03dSBarry Smith   PetscFunctionBegin;
1168ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1169f830108cSBarry Smith   ierr = (*a->A->ops->multadd)(a->A,xx,yy,zz);CHKERRQ(ierr);
1170ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1171f830108cSBarry Smith   ierr = (*a->B->ops->multadd)(a->B,a->lvec,zz,zz);CHKERRQ(ierr);
11723a40ed3dSBarry Smith   PetscFunctionReturn(0);
1173cee3aa6bSSatish Balay }
1174cee3aa6bSSatish Balay 
11754a2ae208SSatish Balay #undef __FUNCT__
11764a2ae208SSatish Balay #define __FUNCT__ "MatMultTranspose_MPIBAIJ"
1177dfbe8321SBarry Smith PetscErrorCode MatMultTranspose_MPIBAIJ(Mat A,Vec xx,Vec yy)
1178cee3aa6bSSatish Balay {
1179cee3aa6bSSatish Balay   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)A->data;
1180dfbe8321SBarry Smith   PetscErrorCode ierr;
1181a5ff213dSBarry Smith   PetscTruth     merged;
1182cee3aa6bSSatish Balay 
1183d64ed03dSBarry Smith   PetscFunctionBegin;
1184a5ff213dSBarry Smith   ierr = VecScatterGetMerged(a->Mvctx,&merged);CHKERRQ(ierr);
1185cee3aa6bSSatish Balay   /* do nondiagonal part */
11867c922b88SBarry Smith   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr);
1187a5ff213dSBarry Smith   if (!merged) {
1188cee3aa6bSSatish Balay     /* send it on its way */
1189ca9f406cSSatish Balay     ierr = VecScatterBegin(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
1190cee3aa6bSSatish Balay     /* do local part */
11917c922b88SBarry Smith     ierr = (*a->A->ops->multtranspose)(a->A,xx,yy);CHKERRQ(ierr);
1192cee3aa6bSSatish Balay     /* receive remote parts: note this assumes the values are not actually */
1193a5ff213dSBarry Smith     /* inserted in yy until the next line */
1194ca9f406cSSatish Balay     ierr = VecScatterEnd(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
1195a5ff213dSBarry Smith   } else {
1196a5ff213dSBarry Smith     /* do local part */
1197a5ff213dSBarry Smith     ierr = (*a->A->ops->multtranspose)(a->A,xx,yy);CHKERRQ(ierr);
1198a5ff213dSBarry Smith     /* send it on its way */
1199ca9f406cSSatish Balay     ierr = VecScatterBegin(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
1200a5ff213dSBarry Smith     /* values actually were received in the Begin() but we need to call this nop */
1201ca9f406cSSatish Balay     ierr = VecScatterEnd(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
1202a5ff213dSBarry Smith   }
12033a40ed3dSBarry Smith   PetscFunctionReturn(0);
1204cee3aa6bSSatish Balay }
1205cee3aa6bSSatish Balay 
12064a2ae208SSatish Balay #undef __FUNCT__
12074a2ae208SSatish Balay #define __FUNCT__ "MatMultTransposeAdd_MPIBAIJ"
1208dfbe8321SBarry Smith PetscErrorCode MatMultTransposeAdd_MPIBAIJ(Mat A,Vec xx,Vec yy,Vec zz)
1209cee3aa6bSSatish Balay {
1210cee3aa6bSSatish Balay   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)A->data;
1211dfbe8321SBarry Smith   PetscErrorCode ierr;
1212cee3aa6bSSatish Balay 
1213d64ed03dSBarry Smith   PetscFunctionBegin;
1214cee3aa6bSSatish Balay   /* do nondiagonal part */
12157c922b88SBarry Smith   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr);
1216cee3aa6bSSatish Balay   /* send it on its way */
1217ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
1218cee3aa6bSSatish Balay   /* do local part */
12197c922b88SBarry Smith   ierr = (*a->A->ops->multtransposeadd)(a->A,xx,yy,zz);CHKERRQ(ierr);
1220cee3aa6bSSatish Balay   /* receive remote parts: note this assumes the values are not actually */
1221cee3aa6bSSatish Balay   /* inserted in yy until the next line, which is true for my implementation*/
1222cee3aa6bSSatish Balay   /* but is not perhaps always true. */
1223ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
12243a40ed3dSBarry Smith   PetscFunctionReturn(0);
1225cee3aa6bSSatish Balay }
1226cee3aa6bSSatish Balay 
1227cee3aa6bSSatish Balay /*
1228cee3aa6bSSatish Balay   This only works correctly for square matrices where the subblock A->A is the
1229cee3aa6bSSatish Balay    diagonal block
1230cee3aa6bSSatish Balay */
12314a2ae208SSatish Balay #undef __FUNCT__
12324a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonal_MPIBAIJ"
1233dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_MPIBAIJ(Mat A,Vec v)
1234cee3aa6bSSatish Balay {
1235cee3aa6bSSatish Balay   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)A->data;
1236dfbe8321SBarry Smith   PetscErrorCode ierr;
1237d64ed03dSBarry Smith 
1238d64ed03dSBarry Smith   PetscFunctionBegin;
1239d0f46423SBarry Smith   if (A->rmap->N != A->cmap->N) SETERRQ(PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block");
12403a40ed3dSBarry Smith   ierr = MatGetDiagonal(a->A,v);CHKERRQ(ierr);
12413a40ed3dSBarry Smith   PetscFunctionReturn(0);
1242cee3aa6bSSatish Balay }
1243cee3aa6bSSatish Balay 
12444a2ae208SSatish Balay #undef __FUNCT__
12454a2ae208SSatish Balay #define __FUNCT__ "MatScale_MPIBAIJ"
1246f4df32b1SMatthew Knepley PetscErrorCode MatScale_MPIBAIJ(Mat A,PetscScalar aa)
1247cee3aa6bSSatish Balay {
1248cee3aa6bSSatish Balay   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)A->data;
1249dfbe8321SBarry Smith   PetscErrorCode ierr;
1250d64ed03dSBarry Smith 
1251d64ed03dSBarry Smith   PetscFunctionBegin;
1252f4df32b1SMatthew Knepley   ierr = MatScale(a->A,aa);CHKERRQ(ierr);
1253f4df32b1SMatthew Knepley   ierr = MatScale(a->B,aa);CHKERRQ(ierr);
12543a40ed3dSBarry Smith   PetscFunctionReturn(0);
1255cee3aa6bSSatish Balay }
1256026e39d0SSatish Balay 
12574a2ae208SSatish Balay #undef __FUNCT__
12584a2ae208SSatish Balay #define __FUNCT__ "MatGetRow_MPIBAIJ"
1259b24ad042SBarry Smith PetscErrorCode MatGetRow_MPIBAIJ(Mat matin,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v)
1260acdf5bf4SSatish Balay {
1261acdf5bf4SSatish Balay   Mat_MPIBAIJ    *mat = (Mat_MPIBAIJ*)matin->data;
126287828ca2SBarry Smith   PetscScalar    *vworkA,*vworkB,**pvA,**pvB,*v_p;
12636849ba73SBarry Smith   PetscErrorCode ierr;
1264d0f46423SBarry Smith   PetscInt       bs = matin->rmap->bs,bs2 = mat->bs2,i,*cworkA,*cworkB,**pcA,**pcB;
1265d0f46423SBarry Smith   PetscInt       nztot,nzA,nzB,lrow,brstart = matin->rmap->rstart,brend = matin->rmap->rend;
1266899cda47SBarry Smith   PetscInt       *cmap,*idx_p,cstart = mat->cstartbs;
1267acdf5bf4SSatish Balay 
1268d64ed03dSBarry Smith   PetscFunctionBegin;
1269abc0a331SBarry Smith   if (mat->getrowactive) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Already active");
1270acdf5bf4SSatish Balay   mat->getrowactive = PETSC_TRUE;
1271acdf5bf4SSatish Balay 
1272acdf5bf4SSatish Balay   if (!mat->rowvalues && (idx || v)) {
1273acdf5bf4SSatish Balay     /*
1274acdf5bf4SSatish Balay         allocate enough space to hold information from the longest row.
1275acdf5bf4SSatish Balay     */
1276acdf5bf4SSatish Balay     Mat_SeqBAIJ *Aa = (Mat_SeqBAIJ*)mat->A->data,*Ba = (Mat_SeqBAIJ*)mat->B->data;
1277b24ad042SBarry Smith     PetscInt     max = 1,mbs = mat->mbs,tmp;
1278bd16c2feSSatish Balay     for (i=0; i<mbs; i++) {
1279acdf5bf4SSatish Balay       tmp = Aa->i[i+1] - Aa->i[i] + Ba->i[i+1] - Ba->i[i];
1280acdf5bf4SSatish Balay       if (max < tmp) { max = tmp; }
1281acdf5bf4SSatish Balay     }
1282b24ad042SBarry Smith     ierr = PetscMalloc(max*bs2*(sizeof(PetscInt)+sizeof(PetscScalar)),&mat->rowvalues);CHKERRQ(ierr);
1283b24ad042SBarry Smith     mat->rowindices = (PetscInt*)(mat->rowvalues + max*bs2);
1284acdf5bf4SSatish Balay   }
1285acdf5bf4SSatish Balay 
128629bbc08cSBarry Smith   if (row < brstart || row >= brend) SETERRQ(PETSC_ERR_SUP,"Only local rows")
1287d9d09a02SSatish Balay   lrow = row - brstart;
1288acdf5bf4SSatish Balay 
1289acdf5bf4SSatish Balay   pvA = &vworkA; pcA = &cworkA; pvB = &vworkB; pcB = &cworkB;
1290acdf5bf4SSatish Balay   if (!v)   {pvA = 0; pvB = 0;}
1291acdf5bf4SSatish Balay   if (!idx) {pcA = 0; if (!v) pcB = 0;}
1292f830108cSBarry Smith   ierr = (*mat->A->ops->getrow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr);
1293f830108cSBarry Smith   ierr = (*mat->B->ops->getrow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr);
1294acdf5bf4SSatish Balay   nztot = nzA + nzB;
1295acdf5bf4SSatish Balay 
1296acdf5bf4SSatish Balay   cmap  = mat->garray;
1297acdf5bf4SSatish Balay   if (v  || idx) {
1298acdf5bf4SSatish Balay     if (nztot) {
1299acdf5bf4SSatish Balay       /* Sort by increasing column numbers, assuming A and B already sorted */
1300b24ad042SBarry Smith       PetscInt imark = -1;
1301acdf5bf4SSatish Balay       if (v) {
1302acdf5bf4SSatish Balay         *v = v_p = mat->rowvalues;
1303acdf5bf4SSatish Balay         for (i=0; i<nzB; i++) {
1304d9d09a02SSatish Balay           if (cmap[cworkB[i]/bs] < cstart)   v_p[i] = vworkB[i];
1305acdf5bf4SSatish Balay           else break;
1306acdf5bf4SSatish Balay         }
1307acdf5bf4SSatish Balay         imark = i;
1308acdf5bf4SSatish Balay         for (i=0; i<nzA; i++)     v_p[imark+i] = vworkA[i];
1309acdf5bf4SSatish Balay         for (i=imark; i<nzB; i++) v_p[nzA+i]   = vworkB[i];
1310acdf5bf4SSatish Balay       }
1311acdf5bf4SSatish Balay       if (idx) {
1312acdf5bf4SSatish Balay         *idx = idx_p = mat->rowindices;
1313acdf5bf4SSatish Balay         if (imark > -1) {
1314acdf5bf4SSatish Balay           for (i=0; i<imark; i++) {
1315bd16c2feSSatish Balay             idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs;
1316acdf5bf4SSatish Balay           }
1317acdf5bf4SSatish Balay         } else {
1318acdf5bf4SSatish Balay           for (i=0; i<nzB; i++) {
1319d9d09a02SSatish Balay             if (cmap[cworkB[i]/bs] < cstart)
1320d9d09a02SSatish Balay               idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ;
1321acdf5bf4SSatish Balay             else break;
1322acdf5bf4SSatish Balay           }
1323acdf5bf4SSatish Balay           imark = i;
1324acdf5bf4SSatish Balay         }
1325d9d09a02SSatish Balay         for (i=0; i<nzA; i++)     idx_p[imark+i] = cstart*bs + cworkA[i];
1326d9d09a02SSatish Balay         for (i=imark; i<nzB; i++) idx_p[nzA+i]   = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ;
1327acdf5bf4SSatish Balay       }
1328d64ed03dSBarry Smith     } else {
1329d212a18eSSatish Balay       if (idx) *idx = 0;
1330d212a18eSSatish Balay       if (v)   *v   = 0;
1331d212a18eSSatish Balay     }
1332acdf5bf4SSatish Balay   }
1333acdf5bf4SSatish Balay   *nz = nztot;
1334f830108cSBarry Smith   ierr = (*mat->A->ops->restorerow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr);
1335f830108cSBarry Smith   ierr = (*mat->B->ops->restorerow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr);
13363a40ed3dSBarry Smith   PetscFunctionReturn(0);
1337acdf5bf4SSatish Balay }
1338acdf5bf4SSatish Balay 
13394a2ae208SSatish Balay #undef __FUNCT__
13404a2ae208SSatish Balay #define __FUNCT__ "MatRestoreRow_MPIBAIJ"
1341b24ad042SBarry Smith PetscErrorCode MatRestoreRow_MPIBAIJ(Mat mat,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v)
1342acdf5bf4SSatish Balay {
1343acdf5bf4SSatish Balay   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data;
1344d64ed03dSBarry Smith 
1345d64ed03dSBarry Smith   PetscFunctionBegin;
1346abc0a331SBarry Smith   if (!baij->getrowactive) {
134729bbc08cSBarry Smith     SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"MatGetRow not called");
1348acdf5bf4SSatish Balay   }
1349acdf5bf4SSatish Balay   baij->getrowactive = PETSC_FALSE;
13503a40ed3dSBarry Smith   PetscFunctionReturn(0);
1351acdf5bf4SSatish Balay }
1352acdf5bf4SSatish Balay 
13534a2ae208SSatish Balay #undef __FUNCT__
13544a2ae208SSatish Balay #define __FUNCT__ "MatZeroEntries_MPIBAIJ"
1355dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_MPIBAIJ(Mat A)
135658667388SSatish Balay {
135758667388SSatish Balay   Mat_MPIBAIJ    *l = (Mat_MPIBAIJ*)A->data;
1358dfbe8321SBarry Smith   PetscErrorCode ierr;
1359d64ed03dSBarry Smith 
1360d64ed03dSBarry Smith   PetscFunctionBegin;
136158667388SSatish Balay   ierr = MatZeroEntries(l->A);CHKERRQ(ierr);
136258667388SSatish Balay   ierr = MatZeroEntries(l->B);CHKERRQ(ierr);
13633a40ed3dSBarry Smith   PetscFunctionReturn(0);
136458667388SSatish Balay }
13650ac07820SSatish Balay 
13664a2ae208SSatish Balay #undef __FUNCT__
13674a2ae208SSatish Balay #define __FUNCT__ "MatGetInfo_MPIBAIJ"
1368dfbe8321SBarry Smith PetscErrorCode MatGetInfo_MPIBAIJ(Mat matin,MatInfoType flag,MatInfo *info)
13690ac07820SSatish Balay {
13704e220ebcSLois Curfman McInnes   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)matin->data;
13714e220ebcSLois Curfman McInnes   Mat            A = a->A,B = a->B;
1372dfbe8321SBarry Smith   PetscErrorCode ierr;
1373329f5518SBarry Smith   PetscReal      isend[5],irecv[5];
13740ac07820SSatish Balay 
1375d64ed03dSBarry Smith   PetscFunctionBegin;
1376d0f46423SBarry Smith   info->block_size     = (PetscReal)matin->rmap->bs;
13774e220ebcSLois Curfman McInnes   ierr = MatGetInfo(A,MAT_LOCAL,info);CHKERRQ(ierr);
13780e4b21beSBarry Smith   isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded;
1379de87f314SBarry Smith   isend[3] = info->memory;  isend[4] = info->mallocs;
13804e220ebcSLois Curfman McInnes   ierr = MatGetInfo(B,MAT_LOCAL,info);CHKERRQ(ierr);
13810e4b21beSBarry Smith   isend[0] += info->nz_used; isend[1] += info->nz_allocated; isend[2] += info->nz_unneeded;
1382de87f314SBarry Smith   isend[3] += info->memory;  isend[4] += info->mallocs;
13830ac07820SSatish Balay   if (flag == MAT_LOCAL) {
13844e220ebcSLois Curfman McInnes     info->nz_used      = isend[0];
13854e220ebcSLois Curfman McInnes     info->nz_allocated = isend[1];
13864e220ebcSLois Curfman McInnes     info->nz_unneeded  = isend[2];
13874e220ebcSLois Curfman McInnes     info->memory       = isend[3];
13884e220ebcSLois Curfman McInnes     info->mallocs      = isend[4];
13890ac07820SSatish Balay   } else if (flag == MAT_GLOBAL_MAX) {
13907adad957SLisandro Dalcin     ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_MAX,((PetscObject)matin)->comm);CHKERRQ(ierr);
13914e220ebcSLois Curfman McInnes     info->nz_used      = irecv[0];
13924e220ebcSLois Curfman McInnes     info->nz_allocated = irecv[1];
13934e220ebcSLois Curfman McInnes     info->nz_unneeded  = irecv[2];
13944e220ebcSLois Curfman McInnes     info->memory       = irecv[3];
13954e220ebcSLois Curfman McInnes     info->mallocs      = irecv[4];
13960ac07820SSatish Balay   } else if (flag == MAT_GLOBAL_SUM) {
13977adad957SLisandro Dalcin     ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_SUM,((PetscObject)matin)->comm);CHKERRQ(ierr);
13984e220ebcSLois Curfman McInnes     info->nz_used      = irecv[0];
13994e220ebcSLois Curfman McInnes     info->nz_allocated = irecv[1];
14004e220ebcSLois Curfman McInnes     info->nz_unneeded  = irecv[2];
14014e220ebcSLois Curfman McInnes     info->memory       = irecv[3];
14024e220ebcSLois Curfman McInnes     info->mallocs      = irecv[4];
1403d41123aaSBarry Smith   } else {
140477431f27SBarry Smith     SETERRQ1(PETSC_ERR_ARG_WRONG,"Unknown MatInfoType argument %d",(int)flag);
14050ac07820SSatish Balay   }
14064e220ebcSLois Curfman McInnes   info->fill_ratio_given  = 0; /* no parallel LU/ILU/Cholesky */
14074e220ebcSLois Curfman McInnes   info->fill_ratio_needed = 0;
14084e220ebcSLois Curfman McInnes   info->factor_mallocs    = 0;
14093a40ed3dSBarry Smith   PetscFunctionReturn(0);
14100ac07820SSatish Balay }
14110ac07820SSatish Balay 
14124a2ae208SSatish Balay #undef __FUNCT__
14134a2ae208SSatish Balay #define __FUNCT__ "MatSetOption_MPIBAIJ"
14144e0d8c25SBarry Smith PetscErrorCode MatSetOption_MPIBAIJ(Mat A,MatOption op,PetscTruth flg)
141558667388SSatish Balay {
141658667388SSatish Balay   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)A->data;
1417dfbe8321SBarry Smith   PetscErrorCode ierr;
141858667388SSatish Balay 
1419d64ed03dSBarry Smith   PetscFunctionBegin;
142012c028f9SKris Buschelman   switch (op) {
1421512a5fc5SBarry Smith   case MAT_NEW_NONZERO_LOCATIONS:
142212c028f9SKris Buschelman   case MAT_NEW_NONZERO_ALLOCATION_ERR:
142312c028f9SKris Buschelman   case MAT_KEEP_ZEROED_ROWS:
142412c028f9SKris Buschelman   case MAT_NEW_NONZERO_LOCATION_ERR:
14254e0d8c25SBarry Smith     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
14264e0d8c25SBarry Smith     ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr);
142712c028f9SKris Buschelman     break;
142812c028f9SKris Buschelman   case MAT_ROW_ORIENTED:
14294e0d8c25SBarry Smith     a->roworiented = flg;
14304e0d8c25SBarry Smith     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
14314e0d8c25SBarry Smith     ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr);
143212c028f9SKris Buschelman     break;
14334e0d8c25SBarry Smith   case MAT_NEW_DIAGONALS:
1434290bbb0aSBarry Smith     ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr);
143512c028f9SKris Buschelman     break;
143612c028f9SKris Buschelman   case MAT_IGNORE_OFF_PROC_ENTRIES:
14374e0d8c25SBarry Smith     a->donotstash = flg;
143812c028f9SKris Buschelman     break;
143912c028f9SKris Buschelman   case MAT_USE_HASH_TABLE:
14404e0d8c25SBarry Smith     a->ht_flag = flg;
144112c028f9SKris Buschelman     break;
144277e54ba9SKris Buschelman   case MAT_SYMMETRIC:
144377e54ba9SKris Buschelman   case MAT_STRUCTURALLY_SYMMETRIC:
14442188ac68SBarry Smith   case MAT_HERMITIAN:
14452188ac68SBarry Smith   case MAT_SYMMETRY_ETERNAL:
14464e0d8c25SBarry Smith     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
144777e54ba9SKris Buschelman     break;
144812c028f9SKris Buschelman   default:
1449ad86a440SBarry Smith     SETERRQ1(PETSC_ERR_SUP,"unknown option %d",op);
1450d64ed03dSBarry Smith   }
14513a40ed3dSBarry Smith   PetscFunctionReturn(0);
145258667388SSatish Balay }
145358667388SSatish Balay 
14544a2ae208SSatish Balay #undef __FUNCT__
14554a2ae208SSatish Balay #define __FUNCT__ "MatTranspose_MPIBAIJ("
1456fc4dec0aSBarry Smith PetscErrorCode MatTranspose_MPIBAIJ(Mat A,MatReuse reuse,Mat *matout)
14570ac07820SSatish Balay {
14580ac07820SSatish Balay   Mat_MPIBAIJ    *baij = (Mat_MPIBAIJ*)A->data;
14590ac07820SSatish Balay   Mat_SeqBAIJ    *Aloc;
14600ac07820SSatish Balay   Mat            B;
1461dfbe8321SBarry Smith   PetscErrorCode ierr;
1462d0f46423SBarry Smith   PetscInt       M=A->rmap->N,N=A->cmap->N,*ai,*aj,i,*rvals,j,k,col;
1463d0f46423SBarry Smith   PetscInt       bs=A->rmap->bs,mbs=baij->mbs;
14643eda8832SBarry Smith   MatScalar      *a;
14650ac07820SSatish Balay 
1466d64ed03dSBarry Smith   PetscFunctionBegin;
1467e9695a30SBarry Smith   if (reuse == MAT_REUSE_MATRIX && A == *matout && M != N) SETERRQ(PETSC_ERR_ARG_SIZ,"Square matrix only for in-place");
1468fc4dec0aSBarry Smith   if (reuse == MAT_INITIAL_MATRIX || *matout == A) {
14697adad957SLisandro Dalcin     ierr = MatCreate(((PetscObject)A)->comm,&B);CHKERRQ(ierr);
1470d0f46423SBarry Smith     ierr = MatSetSizes(B,A->cmap->n,A->rmap->n,N,M);CHKERRQ(ierr);
14717adad957SLisandro Dalcin     ierr = MatSetType(B,((PetscObject)A)->type_name);CHKERRQ(ierr);
1472d0f46423SBarry Smith     ierr = MatMPIBAIJSetPreallocation(B,A->rmap->bs,0,PETSC_NULL,0,PETSC_NULL);CHKERRQ(ierr);
1473fc4dec0aSBarry Smith   } else {
1474fc4dec0aSBarry Smith     B = *matout;
1475fc4dec0aSBarry Smith   }
14760ac07820SSatish Balay 
14770ac07820SSatish Balay   /* copy over the A part */
14780ac07820SSatish Balay   Aloc = (Mat_SeqBAIJ*)baij->A->data;
14790ac07820SSatish Balay   ai   = Aloc->i; aj = Aloc->j; a = Aloc->a;
1480b24ad042SBarry Smith   ierr = PetscMalloc(bs*sizeof(PetscInt),&rvals);CHKERRQ(ierr);
14810ac07820SSatish Balay 
14820ac07820SSatish Balay   for (i=0; i<mbs; i++) {
1483899cda47SBarry Smith     rvals[0] = bs*(baij->rstartbs + i);
14840ac07820SSatish Balay     for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; }
14850ac07820SSatish Balay     for (j=ai[i]; j<ai[i+1]; j++) {
1486899cda47SBarry Smith       col = (baij->cstartbs+aj[j])*bs;
14870ac07820SSatish Balay       for (k=0; k<bs; k++) {
148897e5c40aSBarry Smith         ierr = MatSetValues_MPIBAIJ(B,1,&col,bs,rvals,a,INSERT_VALUES);CHKERRQ(ierr);
14890ac07820SSatish Balay         col++; a += bs;
14900ac07820SSatish Balay       }
14910ac07820SSatish Balay     }
14920ac07820SSatish Balay   }
14930ac07820SSatish Balay   /* copy over the B part */
14940ac07820SSatish Balay   Aloc = (Mat_SeqBAIJ*)baij->B->data;
14950ac07820SSatish Balay   ai = Aloc->i; aj = Aloc->j; a = Aloc->a;
14960ac07820SSatish Balay   for (i=0; i<mbs; i++) {
1497899cda47SBarry Smith     rvals[0] = bs*(baij->rstartbs + i);
14980ac07820SSatish Balay     for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; }
14990ac07820SSatish Balay     for (j=ai[i]; j<ai[i+1]; j++) {
15000ac07820SSatish Balay       col = baij->garray[aj[j]]*bs;
15010ac07820SSatish Balay       for (k=0; k<bs; k++) {
150297e5c40aSBarry Smith         ierr = MatSetValues_MPIBAIJ(B,1,&col,bs,rvals,a,INSERT_VALUES);CHKERRQ(ierr);
15030ac07820SSatish Balay         col++; a += bs;
15040ac07820SSatish Balay       }
15050ac07820SSatish Balay     }
15060ac07820SSatish Balay   }
1507606d414cSSatish Balay   ierr = PetscFree(rvals);CHKERRQ(ierr);
15080ac07820SSatish Balay   ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
15090ac07820SSatish Balay   ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
15100ac07820SSatish Balay 
1511815cbec1SBarry Smith   if (reuse == MAT_INITIAL_MATRIX || *matout != A) {
15120ac07820SSatish Balay     *matout = B;
15130ac07820SSatish Balay   } else {
1514273d9f13SBarry Smith     ierr = MatHeaderCopy(A,B);CHKERRQ(ierr);
15150ac07820SSatish Balay   }
15163a40ed3dSBarry Smith   PetscFunctionReturn(0);
15170ac07820SSatish Balay }
15180e95ebc0SSatish Balay 
15194a2ae208SSatish Balay #undef __FUNCT__
15204a2ae208SSatish Balay #define __FUNCT__ "MatDiagonalScale_MPIBAIJ"
1521dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_MPIBAIJ(Mat mat,Vec ll,Vec rr)
15220e95ebc0SSatish Balay {
152336c4a09eSSatish Balay   Mat_MPIBAIJ    *baij = (Mat_MPIBAIJ*)mat->data;
152436c4a09eSSatish Balay   Mat            a = baij->A,b = baij->B;
1525dfbe8321SBarry Smith   PetscErrorCode ierr;
1526b24ad042SBarry Smith   PetscInt       s1,s2,s3;
15270e95ebc0SSatish Balay 
1528d64ed03dSBarry Smith   PetscFunctionBegin;
152936c4a09eSSatish Balay   ierr = MatGetLocalSize(mat,&s2,&s3);CHKERRQ(ierr);
153036c4a09eSSatish Balay   if (rr) {
153136c4a09eSSatish Balay     ierr = VecGetLocalSize(rr,&s1);CHKERRQ(ierr);
153229bbc08cSBarry Smith     if (s1!=s3) SETERRQ(PETSC_ERR_ARG_SIZ,"right vector non-conforming local size");
153336c4a09eSSatish Balay     /* Overlap communication with computation. */
1534ca9f406cSSatish Balay     ierr = VecScatterBegin(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
153536c4a09eSSatish Balay   }
15360e95ebc0SSatish Balay   if (ll) {
15370e95ebc0SSatish Balay     ierr = VecGetLocalSize(ll,&s1);CHKERRQ(ierr);
153829bbc08cSBarry Smith     if (s1!=s2) SETERRQ(PETSC_ERR_ARG_SIZ,"left vector non-conforming local size");
1539a21fb8cbSBarry Smith     ierr = (*b->ops->diagonalscale)(b,ll,PETSC_NULL);CHKERRQ(ierr);
15400e95ebc0SSatish Balay   }
154136c4a09eSSatish Balay   /* scale  the diagonal block */
154236c4a09eSSatish Balay   ierr = (*a->ops->diagonalscale)(a,ll,rr);CHKERRQ(ierr);
154336c4a09eSSatish Balay 
154436c4a09eSSatish Balay   if (rr) {
154536c4a09eSSatish Balay     /* Do a scatter end and then right scale the off-diagonal block */
1546ca9f406cSSatish Balay     ierr = VecScatterEnd(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1547a21fb8cbSBarry Smith     ierr = (*b->ops->diagonalscale)(b,PETSC_NULL,baij->lvec);CHKERRQ(ierr);
154836c4a09eSSatish Balay   }
154936c4a09eSSatish Balay 
15503a40ed3dSBarry Smith   PetscFunctionReturn(0);
15510e95ebc0SSatish Balay }
15520e95ebc0SSatish Balay 
15534a2ae208SSatish Balay #undef __FUNCT__
15544a2ae208SSatish Balay #define __FUNCT__ "MatZeroRows_MPIBAIJ"
1555f4df32b1SMatthew Knepley PetscErrorCode MatZeroRows_MPIBAIJ(Mat A,PetscInt N,const PetscInt rows[],PetscScalar diag)
15560ac07820SSatish Balay {
15570ac07820SSatish Balay   Mat_MPIBAIJ    *l = (Mat_MPIBAIJ*)A->data;
15586849ba73SBarry Smith   PetscErrorCode ierr;
1559b24ad042SBarry Smith   PetscMPIInt    imdex,size = l->size,n,rank = l->rank;
1560d0f46423SBarry Smith   PetscInt       i,*owners = A->rmap->range;
1561b24ad042SBarry Smith   PetscInt       *nprocs,j,idx,nsends,row;
1562b24ad042SBarry Smith   PetscInt       nmax,*svalues,*starts,*owner,nrecvs;
15637adad957SLisandro Dalcin   PetscInt       *rvalues,tag = ((PetscObject)A)->tag,count,base,slen,*source,lastidx = -1;
1564d0f46423SBarry Smith   PetscInt       *lens,*lrows,*values,rstart_bs=A->rmap->rstart;
15657adad957SLisandro Dalcin   MPI_Comm       comm = ((PetscObject)A)->comm;
15660ac07820SSatish Balay   MPI_Request    *send_waits,*recv_waits;
15670ac07820SSatish Balay   MPI_Status     recv_status,*send_status;
15686543fbbaSBarry Smith #if defined(PETSC_DEBUG)
15696543fbbaSBarry Smith   PetscTruth     found = PETSC_FALSE;
15706543fbbaSBarry Smith #endif
15710ac07820SSatish Balay 
1572d64ed03dSBarry Smith   PetscFunctionBegin;
15730ac07820SSatish Balay   /*  first count number of contributors to each processor */
1574b24ad042SBarry Smith   ierr  = PetscMalloc(2*size*sizeof(PetscInt),&nprocs);CHKERRQ(ierr);
1575b24ad042SBarry Smith   ierr  = PetscMemzero(nprocs,2*size*sizeof(PetscInt));CHKERRQ(ierr);
1576b24ad042SBarry Smith   ierr  = PetscMalloc((N+1)*sizeof(PetscInt),&owner);CHKERRQ(ierr); /* see note*/
15776543fbbaSBarry Smith   j = 0;
15780ac07820SSatish Balay   for (i=0; i<N; i++) {
15796543fbbaSBarry Smith     if (lastidx > (idx = rows[i])) j = 0;
15806543fbbaSBarry Smith     lastidx = idx;
15816543fbbaSBarry Smith     for (; j<size; j++) {
1582357c27ecSBarry Smith       if (idx >= owners[j] && idx < owners[j+1]) {
15836543fbbaSBarry Smith         nprocs[2*j]++;
15846543fbbaSBarry Smith         nprocs[2*j+1] = 1;
15856543fbbaSBarry Smith         owner[i] = j;
15866543fbbaSBarry Smith #if defined(PETSC_DEBUG)
15876543fbbaSBarry Smith         found = PETSC_TRUE;
15886543fbbaSBarry Smith #endif
15896543fbbaSBarry Smith         break;
15900ac07820SSatish Balay       }
15910ac07820SSatish Balay     }
15926543fbbaSBarry Smith #if defined(PETSC_DEBUG)
159329bbc08cSBarry Smith     if (!found) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Index out of range");
15946543fbbaSBarry Smith     found = PETSC_FALSE;
15956543fbbaSBarry Smith #endif
15960ac07820SSatish Balay   }
1597c1dc657dSBarry Smith   nsends = 0;  for (i=0; i<size; i++) { nsends += nprocs[2*i+1];}
15980ac07820SSatish Balay 
15990ac07820SSatish Balay   /* inform other processors of number of messages and max length*/
1600c1dc657dSBarry Smith   ierr = PetscMaxSum(comm,nprocs,&nmax,&nrecvs);CHKERRQ(ierr);
16010ac07820SSatish Balay 
16020ac07820SSatish Balay   /* post receives:   */
1603b24ad042SBarry Smith   ierr = PetscMalloc((nrecvs+1)*(nmax+1)*sizeof(PetscInt),&rvalues);CHKERRQ(ierr);
1604b0a32e0cSBarry Smith   ierr = PetscMalloc((nrecvs+1)*sizeof(MPI_Request),&recv_waits);CHKERRQ(ierr);
16050ac07820SSatish Balay   for (i=0; i<nrecvs; i++) {
1606b24ad042SBarry Smith     ierr = MPI_Irecv(rvalues+nmax*i,nmax,MPIU_INT,MPI_ANY_SOURCE,tag,comm,recv_waits+i);CHKERRQ(ierr);
16070ac07820SSatish Balay   }
16080ac07820SSatish Balay 
16090ac07820SSatish Balay   /* do sends:
16100ac07820SSatish Balay      1) starts[i] gives the starting index in svalues for stuff going to
16110ac07820SSatish Balay      the ith processor
16120ac07820SSatish Balay   */
1613b24ad042SBarry Smith   ierr = PetscMalloc((N+1)*sizeof(PetscInt),&svalues);CHKERRQ(ierr);
1614b0a32e0cSBarry Smith   ierr = PetscMalloc((nsends+1)*sizeof(MPI_Request),&send_waits);CHKERRQ(ierr);
1615b24ad042SBarry Smith   ierr = PetscMalloc((size+1)*sizeof(PetscInt),&starts);CHKERRQ(ierr);
16160ac07820SSatish Balay   starts[0]  = 0;
1617c1dc657dSBarry Smith   for (i=1; i<size; i++) { starts[i] = starts[i-1] + nprocs[2*i-2];}
16180ac07820SSatish Balay   for (i=0; i<N; i++) {
16190ac07820SSatish Balay     svalues[starts[owner[i]]++] = rows[i];
16200ac07820SSatish Balay   }
16210ac07820SSatish Balay 
16220ac07820SSatish Balay   starts[0] = 0;
1623c1dc657dSBarry Smith   for (i=1; i<size+1; i++) { starts[i] = starts[i-1] + nprocs[2*i-2];}
16240ac07820SSatish Balay   count = 0;
16250ac07820SSatish Balay   for (i=0; i<size; i++) {
1626c1dc657dSBarry Smith     if (nprocs[2*i+1]) {
1627b24ad042SBarry Smith       ierr = MPI_Isend(svalues+starts[i],nprocs[2*i],MPIU_INT,i,tag,comm,send_waits+count++);CHKERRQ(ierr);
16280ac07820SSatish Balay     }
16290ac07820SSatish Balay   }
1630606d414cSSatish Balay   ierr = PetscFree(starts);CHKERRQ(ierr);
16310ac07820SSatish Balay 
1632357c27ecSBarry Smith   base = owners[rank];
16330ac07820SSatish Balay 
16340ac07820SSatish Balay   /*  wait on receives */
1635b24ad042SBarry Smith   ierr   = PetscMalloc(2*(nrecvs+1)*sizeof(PetscInt),&lens);CHKERRQ(ierr);
16360ac07820SSatish Balay   source = lens + nrecvs;
16370ac07820SSatish Balay   count  = nrecvs; slen = 0;
16380ac07820SSatish Balay   while (count) {
1639ca161407SBarry Smith     ierr = MPI_Waitany(nrecvs,recv_waits,&imdex,&recv_status);CHKERRQ(ierr);
16400ac07820SSatish Balay     /* unpack receives into our local space */
1641b24ad042SBarry Smith     ierr = MPI_Get_count(&recv_status,MPIU_INT,&n);CHKERRQ(ierr);
16420ac07820SSatish Balay     source[imdex]  = recv_status.MPI_SOURCE;
16430ac07820SSatish Balay     lens[imdex]    = n;
16440ac07820SSatish Balay     slen          += n;
16450ac07820SSatish Balay     count--;
16460ac07820SSatish Balay   }
1647606d414cSSatish Balay   ierr = PetscFree(recv_waits);CHKERRQ(ierr);
16480ac07820SSatish Balay 
16490ac07820SSatish Balay   /* move the data into the send scatter */
1650b24ad042SBarry Smith   ierr = PetscMalloc((slen+1)*sizeof(PetscInt),&lrows);CHKERRQ(ierr);
16510ac07820SSatish Balay   count = 0;
16520ac07820SSatish Balay   for (i=0; i<nrecvs; i++) {
16530ac07820SSatish Balay     values = rvalues + i*nmax;
16540ac07820SSatish Balay     for (j=0; j<lens[i]; j++) {
16550ac07820SSatish Balay       lrows[count++] = values[j] - base;
16560ac07820SSatish Balay     }
16570ac07820SSatish Balay   }
1658606d414cSSatish Balay   ierr = PetscFree(rvalues);CHKERRQ(ierr);
1659606d414cSSatish Balay   ierr = PetscFree(lens);CHKERRQ(ierr);
1660606d414cSSatish Balay   ierr = PetscFree(owner);CHKERRQ(ierr);
1661606d414cSSatish Balay   ierr = PetscFree(nprocs);CHKERRQ(ierr);
16620ac07820SSatish Balay 
16630ac07820SSatish Balay   /* actually zap the local rows */
166472dacd9aSBarry Smith   /*
166572dacd9aSBarry Smith         Zero the required rows. If the "diagonal block" of the matrix
1666a8c7a070SBarry Smith      is square and the user wishes to set the diagonal we use separate
166772dacd9aSBarry Smith      code so that MatSetValues() is not called for each diagonal allocating
166872dacd9aSBarry Smith      new memory, thus calling lots of mallocs and slowing things down.
166972dacd9aSBarry Smith 
1670f4df32b1SMatthew Knepley        Contributed by: Matthew Knepley
167172dacd9aSBarry Smith   */
16729c957beeSSatish Balay   /* must zero l->B before l->A because the (diag) case below may put values into l->B*/
1673f4df32b1SMatthew Knepley   ierr = MatZeroRows_SeqBAIJ(l->B,slen,lrows,0.0);CHKERRQ(ierr);
1674d0f46423SBarry Smith   if ((diag != 0.0) && (l->A->rmap->N == l->A->cmap->N)) {
1675f4df32b1SMatthew Knepley     ierr = MatZeroRows_SeqBAIJ(l->A,slen,lrows,diag);CHKERRQ(ierr);
1676f4df32b1SMatthew Knepley   } else if (diag != 0.0) {
1677f4df32b1SMatthew Knepley     ierr = MatZeroRows_SeqBAIJ(l->A,slen,lrows,0.0);CHKERRQ(ierr);
1678fa46199cSSatish Balay     if (((Mat_SeqBAIJ*)l->A->data)->nonew) {
167929bbc08cSBarry Smith       SETERRQ(PETSC_ERR_SUP,"MatZeroRows() on rectangular matrices cannot be used with the Mat options \n\
1680512a5fc5SBarry Smith MAT_NEW_NONZERO_LOCATIONS,MAT_NEW_NONZERO_LOCATION_ERR,MAT_NEW_NONZERO_ALLOCATION_ERR");
16816525c446SSatish Balay     }
1682a07cd24cSSatish Balay     for (i=0; i<slen; i++) {
1683a07cd24cSSatish Balay       row  = lrows[i] + rstart_bs;
1684f4df32b1SMatthew Knepley       ierr = MatSetValues(A,1,&row,1,&row,&diag,INSERT_VALUES);CHKERRQ(ierr);
1685a07cd24cSSatish Balay     }
1686a07cd24cSSatish Balay     ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
1687a07cd24cSSatish Balay     ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
16889c957beeSSatish Balay   } else {
1689f4df32b1SMatthew Knepley     ierr = MatZeroRows_SeqBAIJ(l->A,slen,lrows,0.0);CHKERRQ(ierr);
1690a07cd24cSSatish Balay   }
16919c957beeSSatish Balay 
1692606d414cSSatish Balay   ierr = PetscFree(lrows);CHKERRQ(ierr);
1693a07cd24cSSatish Balay 
16940ac07820SSatish Balay   /* wait on sends */
16950ac07820SSatish Balay   if (nsends) {
169682502324SSatish Balay     ierr = PetscMalloc(nsends*sizeof(MPI_Status),&send_status);CHKERRQ(ierr);
1697ca161407SBarry Smith     ierr = MPI_Waitall(nsends,send_waits,send_status);CHKERRQ(ierr);
1698606d414cSSatish Balay     ierr = PetscFree(send_status);CHKERRQ(ierr);
16990ac07820SSatish Balay   }
1700606d414cSSatish Balay   ierr = PetscFree(send_waits);CHKERRQ(ierr);
1701606d414cSSatish Balay   ierr = PetscFree(svalues);CHKERRQ(ierr);
17020ac07820SSatish Balay 
17033a40ed3dSBarry Smith   PetscFunctionReturn(0);
17040ac07820SSatish Balay }
170572dacd9aSBarry Smith 
17064a2ae208SSatish Balay #undef __FUNCT__
17074a2ae208SSatish Balay #define __FUNCT__ "MatSetUnfactored_MPIBAIJ"
1708dfbe8321SBarry Smith PetscErrorCode MatSetUnfactored_MPIBAIJ(Mat A)
1709bb5a7306SBarry Smith {
1710bb5a7306SBarry Smith   Mat_MPIBAIJ    *a   = (Mat_MPIBAIJ*)A->data;
1711dfbe8321SBarry Smith   PetscErrorCode ierr;
1712d64ed03dSBarry Smith 
1713d64ed03dSBarry Smith   PetscFunctionBegin;
1714bb5a7306SBarry Smith   ierr = MatSetUnfactored(a->A);CHKERRQ(ierr);
17153a40ed3dSBarry Smith   PetscFunctionReturn(0);
1716bb5a7306SBarry Smith }
1717bb5a7306SBarry Smith 
17186849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIBAIJ(Mat,MatDuplicateOption,Mat *);
17190ac07820SSatish Balay 
17204a2ae208SSatish Balay #undef __FUNCT__
17214a2ae208SSatish Balay #define __FUNCT__ "MatEqual_MPIBAIJ"
1722dfbe8321SBarry Smith PetscErrorCode MatEqual_MPIBAIJ(Mat A,Mat B,PetscTruth *flag)
17237fc3c18eSBarry Smith {
17247fc3c18eSBarry Smith   Mat_MPIBAIJ    *matB = (Mat_MPIBAIJ*)B->data,*matA = (Mat_MPIBAIJ*)A->data;
17257fc3c18eSBarry Smith   Mat            a,b,c,d;
17267fc3c18eSBarry Smith   PetscTruth     flg;
1727dfbe8321SBarry Smith   PetscErrorCode ierr;
17287fc3c18eSBarry Smith 
17297fc3c18eSBarry Smith   PetscFunctionBegin;
17307fc3c18eSBarry Smith   a = matA->A; b = matA->B;
17317fc3c18eSBarry Smith   c = matB->A; d = matB->B;
17327fc3c18eSBarry Smith 
17337fc3c18eSBarry Smith   ierr = MatEqual(a,c,&flg);CHKERRQ(ierr);
1734abc0a331SBarry Smith   if (flg) {
17357fc3c18eSBarry Smith     ierr = MatEqual(b,d,&flg);CHKERRQ(ierr);
17367fc3c18eSBarry Smith   }
17377adad957SLisandro Dalcin   ierr = MPI_Allreduce(&flg,flag,1,MPI_INT,MPI_LAND,((PetscObject)A)->comm);CHKERRQ(ierr);
17387fc3c18eSBarry Smith   PetscFunctionReturn(0);
17397fc3c18eSBarry Smith }
17407fc3c18eSBarry Smith 
17413c896bc6SHong Zhang #undef __FUNCT__
17423c896bc6SHong Zhang #define __FUNCT__ "MatCopy_MPIBAIJ"
17433c896bc6SHong Zhang PetscErrorCode MatCopy_MPIBAIJ(Mat A,Mat B,MatStructure str)
17443c896bc6SHong Zhang {
17453c896bc6SHong Zhang   PetscErrorCode ierr;
17463c896bc6SHong Zhang   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ *)A->data;
17473c896bc6SHong Zhang   Mat_MPIBAIJ    *b = (Mat_MPIBAIJ *)B->data;
17483c896bc6SHong Zhang 
17493c896bc6SHong Zhang   PetscFunctionBegin;
17503c896bc6SHong Zhang   /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */
17513c896bc6SHong Zhang   if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) {
17523c896bc6SHong Zhang     ierr = MatCopy_Basic(A,B,str);CHKERRQ(ierr);
17533c896bc6SHong Zhang   } else {
17543c896bc6SHong Zhang     ierr = MatCopy(a->A,b->A,str);CHKERRQ(ierr);
17553c896bc6SHong Zhang     ierr = MatCopy(a->B,b->B,str);CHKERRQ(ierr);
17563c896bc6SHong Zhang   }
17573c896bc6SHong Zhang   PetscFunctionReturn(0);
17583c896bc6SHong Zhang }
1759273d9f13SBarry Smith 
17604a2ae208SSatish Balay #undef __FUNCT__
17614a2ae208SSatish Balay #define __FUNCT__ "MatSetUpPreallocation_MPIBAIJ"
1762dfbe8321SBarry Smith PetscErrorCode MatSetUpPreallocation_MPIBAIJ(Mat A)
1763273d9f13SBarry Smith {
1764dfbe8321SBarry Smith   PetscErrorCode ierr;
1765273d9f13SBarry Smith 
1766273d9f13SBarry Smith   PetscFunctionBegin;
1767db4efbfdSBarry Smith   ierr =  MatMPIBAIJSetPreallocation(A,-PetscMax(A->rmap->bs,1),PETSC_DEFAULT,0,PETSC_DEFAULT,0);CHKERRQ(ierr);
1768273d9f13SBarry Smith   PetscFunctionReturn(0);
1769273d9f13SBarry Smith }
1770273d9f13SBarry Smith 
17714fe895cdSHong Zhang #include "petscblaslapack.h"
17724fe895cdSHong Zhang #undef __FUNCT__
17734fe895cdSHong Zhang #define __FUNCT__ "MatAXPY_MPIBAIJ"
17744fe895cdSHong Zhang PetscErrorCode MatAXPY_MPIBAIJ(Mat Y,PetscScalar a,Mat X,MatStructure str)
17754fe895cdSHong Zhang {
17764fe895cdSHong Zhang   PetscErrorCode ierr;
17774fe895cdSHong Zhang   Mat_MPIBAIJ    *xx=(Mat_MPIBAIJ *)X->data,*yy=(Mat_MPIBAIJ *)Y->data;
17784fe895cdSHong Zhang   PetscBLASInt   bnz,one=1;
17794fe895cdSHong Zhang   Mat_SeqBAIJ    *x,*y;
17804fe895cdSHong Zhang 
17814fe895cdSHong Zhang   PetscFunctionBegin;
17824fe895cdSHong Zhang   if (str == SAME_NONZERO_PATTERN) {
17834fe895cdSHong Zhang     PetscScalar alpha = a;
17844fe895cdSHong Zhang     x = (Mat_SeqBAIJ *)xx->A->data;
17854fe895cdSHong Zhang     y = (Mat_SeqBAIJ *)yy->A->data;
17860805154bSBarry Smith     bnz = PetscBLASIntCast(x->nz);
17874fe895cdSHong Zhang     BLASaxpy_(&bnz,&alpha,x->a,&one,y->a,&one);
17884fe895cdSHong Zhang     x = (Mat_SeqBAIJ *)xx->B->data;
17894fe895cdSHong Zhang     y = (Mat_SeqBAIJ *)yy->B->data;
17900805154bSBarry Smith     bnz = PetscBLASIntCast(x->nz);
17914fe895cdSHong Zhang     BLASaxpy_(&bnz,&alpha,x->a,&one,y->a,&one);
17924fe895cdSHong Zhang   } else {
17934fe895cdSHong Zhang     ierr = MatAXPY_Basic(Y,a,X,str);CHKERRQ(ierr);
17944fe895cdSHong Zhang   }
17954fe895cdSHong Zhang   PetscFunctionReturn(0);
17964fe895cdSHong Zhang }
17974fe895cdSHong Zhang 
179899cafbc1SBarry Smith #undef __FUNCT__
179999cafbc1SBarry Smith #define __FUNCT__ "MatRealPart_MPIBAIJ"
180099cafbc1SBarry Smith PetscErrorCode MatRealPart_MPIBAIJ(Mat A)
180199cafbc1SBarry Smith {
180299cafbc1SBarry Smith   Mat_MPIBAIJ   *a = (Mat_MPIBAIJ*)A->data;
180399cafbc1SBarry Smith   PetscErrorCode ierr;
180499cafbc1SBarry Smith 
180599cafbc1SBarry Smith   PetscFunctionBegin;
180699cafbc1SBarry Smith   ierr = MatRealPart(a->A);CHKERRQ(ierr);
180799cafbc1SBarry Smith   ierr = MatRealPart(a->B);CHKERRQ(ierr);
180899cafbc1SBarry Smith   PetscFunctionReturn(0);
180999cafbc1SBarry Smith }
181099cafbc1SBarry Smith 
181199cafbc1SBarry Smith #undef __FUNCT__
181299cafbc1SBarry Smith #define __FUNCT__ "MatImaginaryPart_MPIBAIJ"
181399cafbc1SBarry Smith PetscErrorCode MatImaginaryPart_MPIBAIJ(Mat A)
181499cafbc1SBarry Smith {
181599cafbc1SBarry Smith   Mat_MPIBAIJ   *a = (Mat_MPIBAIJ*)A->data;
181699cafbc1SBarry Smith   PetscErrorCode ierr;
181799cafbc1SBarry Smith 
181899cafbc1SBarry Smith   PetscFunctionBegin;
181999cafbc1SBarry Smith   ierr = MatImaginaryPart(a->A);CHKERRQ(ierr);
182099cafbc1SBarry Smith   ierr = MatImaginaryPart(a->B);CHKERRQ(ierr);
182199cafbc1SBarry Smith   PetscFunctionReturn(0);
182299cafbc1SBarry Smith }
182399cafbc1SBarry Smith 
182479bdfe76SSatish Balay /* -------------------------------------------------------------------*/
1825cc2dc46cSBarry Smith static struct _MatOps MatOps_Values = {
1826cc2dc46cSBarry Smith        MatSetValues_MPIBAIJ,
1827cc2dc46cSBarry Smith        MatGetRow_MPIBAIJ,
1828cc2dc46cSBarry Smith        MatRestoreRow_MPIBAIJ,
1829cc2dc46cSBarry Smith        MatMult_MPIBAIJ,
183097304618SKris Buschelman /* 4*/ MatMultAdd_MPIBAIJ,
18317c922b88SBarry Smith        MatMultTranspose_MPIBAIJ,
18327c922b88SBarry Smith        MatMultTransposeAdd_MPIBAIJ,
1833cc2dc46cSBarry Smith        0,
1834cc2dc46cSBarry Smith        0,
1835cc2dc46cSBarry Smith        0,
183697304618SKris Buschelman /*10*/ 0,
1837cc2dc46cSBarry Smith        0,
1838cc2dc46cSBarry Smith        0,
1839cc2dc46cSBarry Smith        0,
1840cc2dc46cSBarry Smith        MatTranspose_MPIBAIJ,
184197304618SKris Buschelman /*15*/ MatGetInfo_MPIBAIJ,
18427fc3c18eSBarry Smith        MatEqual_MPIBAIJ,
1843cc2dc46cSBarry Smith        MatGetDiagonal_MPIBAIJ,
1844cc2dc46cSBarry Smith        MatDiagonalScale_MPIBAIJ,
1845cc2dc46cSBarry Smith        MatNorm_MPIBAIJ,
184697304618SKris Buschelman /*20*/ MatAssemblyBegin_MPIBAIJ,
1847cc2dc46cSBarry Smith        MatAssemblyEnd_MPIBAIJ,
1848cc2dc46cSBarry Smith        0,
1849cc2dc46cSBarry Smith        MatSetOption_MPIBAIJ,
1850cc2dc46cSBarry Smith        MatZeroEntries_MPIBAIJ,
185197304618SKris Buschelman /*25*/ MatZeroRows_MPIBAIJ,
1852cc2dc46cSBarry Smith        0,
1853cc2dc46cSBarry Smith        0,
1854cc2dc46cSBarry Smith        0,
1855cc2dc46cSBarry Smith        0,
185697304618SKris Buschelman /*30*/ MatSetUpPreallocation_MPIBAIJ,
1857273d9f13SBarry Smith        0,
1858cc2dc46cSBarry Smith        0,
1859cc2dc46cSBarry Smith        0,
1860cc2dc46cSBarry Smith        0,
186197304618SKris Buschelman /*35*/ MatDuplicate_MPIBAIJ,
1862cc2dc46cSBarry Smith        0,
1863cc2dc46cSBarry Smith        0,
1864cc2dc46cSBarry Smith        0,
1865cc2dc46cSBarry Smith        0,
18664fe895cdSHong Zhang /*40*/ MatAXPY_MPIBAIJ,
1867cc2dc46cSBarry Smith        MatGetSubMatrices_MPIBAIJ,
1868cc2dc46cSBarry Smith        MatIncreaseOverlap_MPIBAIJ,
1869cc2dc46cSBarry Smith        MatGetValues_MPIBAIJ,
18703c896bc6SHong Zhang        MatCopy_MPIBAIJ,
18718c07d4e3SBarry Smith /*45*/ 0,
1872cc2dc46cSBarry Smith        MatScale_MPIBAIJ,
1873cc2dc46cSBarry Smith        0,
1874cc2dc46cSBarry Smith        0,
1875cc2dc46cSBarry Smith        0,
1876521d7252SBarry Smith /*50*/ 0,
1877cc2dc46cSBarry Smith        0,
1878cc2dc46cSBarry Smith        0,
1879cc2dc46cSBarry Smith        0,
1880cc2dc46cSBarry Smith        0,
188197304618SKris Buschelman /*55*/ 0,
1882cc2dc46cSBarry Smith        0,
1883cc2dc46cSBarry Smith        MatSetUnfactored_MPIBAIJ,
1884cc2dc46cSBarry Smith        0,
1885cc2dc46cSBarry Smith        MatSetValuesBlocked_MPIBAIJ,
188697304618SKris Buschelman /*60*/ 0,
1887f14a1c24SBarry Smith        MatDestroy_MPIBAIJ,
1888f14a1c24SBarry Smith        MatView_MPIBAIJ,
1889357abbc8SBarry Smith        0,
18907843d17aSBarry Smith        0,
189197304618SKris Buschelman /*65*/ 0,
18927843d17aSBarry Smith        0,
18937843d17aSBarry Smith        0,
18947843d17aSBarry Smith        0,
18957843d17aSBarry Smith        0,
1896985db425SBarry Smith /*70*/ MatGetRowMaxAbs_MPIBAIJ,
18977843d17aSBarry Smith        0,
189897304618SKris Buschelman        0,
189997304618SKris Buschelman        0,
190097304618SKris Buschelman        0,
190197304618SKris Buschelman /*75*/ 0,
190297304618SKris Buschelman        0,
190397304618SKris Buschelman        0,
190497304618SKris Buschelman        0,
190597304618SKris Buschelman        0,
190697304618SKris Buschelman /*80*/ 0,
190797304618SKris Buschelman        0,
190897304618SKris Buschelman        0,
190997304618SKris Buschelman        0,
1910865e5f61SKris Buschelman        MatLoad_MPIBAIJ,
1911865e5f61SKris Buschelman /*85*/ 0,
1912865e5f61SKris Buschelman        0,
1913865e5f61SKris Buschelman        0,
1914865e5f61SKris Buschelman        0,
1915865e5f61SKris Buschelman        0,
1916865e5f61SKris Buschelman /*90*/ 0,
1917865e5f61SKris Buschelman        0,
1918865e5f61SKris Buschelman        0,
1919865e5f61SKris Buschelman        0,
1920865e5f61SKris Buschelman        0,
1921865e5f61SKris Buschelman /*95*/ 0,
1922865e5f61SKris Buschelman        0,
1923865e5f61SKris Buschelman        0,
192499cafbc1SBarry Smith        0,
192599cafbc1SBarry Smith        0,
192699cafbc1SBarry Smith /*100*/0,
192799cafbc1SBarry Smith        0,
192899cafbc1SBarry Smith        0,
192999cafbc1SBarry Smith        0,
193099cafbc1SBarry Smith        0,
193199cafbc1SBarry Smith /*105*/0,
193299cafbc1SBarry Smith        MatRealPart_MPIBAIJ,
193399cafbc1SBarry Smith        MatImaginaryPart_MPIBAIJ};
193479bdfe76SSatish Balay 
19355ef9f2a5SBarry Smith 
1936e18c124aSSatish Balay EXTERN_C_BEGIN
19374a2ae208SSatish Balay #undef __FUNCT__
19384a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonalBlock_MPIBAIJ"
1939be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatGetDiagonalBlock_MPIBAIJ(Mat A,PetscTruth *iscopy,MatReuse reuse,Mat *a)
19405ef9f2a5SBarry Smith {
19415ef9f2a5SBarry Smith   PetscFunctionBegin;
19425ef9f2a5SBarry Smith   *a      = ((Mat_MPIBAIJ *)A->data)->A;
19435ef9f2a5SBarry Smith   *iscopy = PETSC_FALSE;
19445ef9f2a5SBarry Smith   PetscFunctionReturn(0);
19455ef9f2a5SBarry Smith }
1946e18c124aSSatish Balay EXTERN_C_END
194779bdfe76SSatish Balay 
1948273d9f13SBarry Smith EXTERN_C_BEGIN
1949f69a0ea3SMatthew Knepley extern PetscErrorCode PETSCMAT_DLLEXPORT MatConvert_MPIBAIJ_MPISBAIJ(Mat, MatType,MatReuse,Mat*);
1950d94109b8SHong Zhang EXTERN_C_END
1951d94109b8SHong Zhang 
1952b8d659d7SLisandro Dalcin EXTERN_C_BEGIN
1953aac34f13SBarry Smith #undef __FUNCT__
1954aac34f13SBarry Smith #define __FUNCT__ "MatMPIBAIJSetPreallocationCSR_MPIBAIJ"
1955cf12db73SBarry Smith PetscErrorCode MatMPIBAIJSetPreallocationCSR_MPIBAIJ(Mat B,PetscInt bs,const PetscInt ii[],const PetscInt jj[],const PetscScalar V[])
1956aac34f13SBarry Smith {
1957b8d659d7SLisandro Dalcin   PetscInt       m,rstart,cstart,cend;
1958b8d659d7SLisandro Dalcin   PetscInt       i,j,d,nz,nz_max=0,*d_nnz=0,*o_nnz=0;
1959b8d659d7SLisandro Dalcin   const PetscInt *JJ=0;
1960b8d659d7SLisandro Dalcin   PetscScalar    *values=0;
1961aac34f13SBarry Smith   PetscErrorCode ierr;
1962aac34f13SBarry Smith 
1963aac34f13SBarry Smith   PetscFunctionBegin;
1964b8d659d7SLisandro Dalcin 
1965b8d659d7SLisandro Dalcin   if (bs < 1) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Invalid block size specified, must be positive but it is %D",bs);
1966d0f46423SBarry Smith   B->rmap->bs = bs;
1967d0f46423SBarry Smith   B->cmap->bs = bs;
1968d0f46423SBarry Smith   ierr = PetscMapSetUp(B->rmap);CHKERRQ(ierr);
1969d0f46423SBarry Smith   ierr = PetscMapSetUp(B->cmap);CHKERRQ(ierr);
1970d0f46423SBarry Smith   m      = B->rmap->n/bs;
1971d0f46423SBarry Smith   rstart = B->rmap->rstart/bs;
1972d0f46423SBarry Smith   cstart = B->cmap->rstart/bs;
1973d0f46423SBarry Smith   cend   = B->cmap->rend/bs;
1974b8d659d7SLisandro Dalcin 
1975cf12db73SBarry Smith   if (ii[0]) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"ii[0] must be 0 but it is %D",ii[0]);
1976aac34f13SBarry Smith   ierr  = PetscMalloc((2*m+1)*sizeof(PetscInt),&d_nnz);CHKERRQ(ierr);
1977aac34f13SBarry Smith   o_nnz = d_nnz + m;
1978aac34f13SBarry Smith   for (i=0; i<m; i++) {
1979cf12db73SBarry Smith     nz = ii[i+1] - ii[i];
1980b8d659d7SLisandro Dalcin     if (nz < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Local row %D has a negative number of columns %D",i,nz);
1981b8d659d7SLisandro Dalcin     nz_max = PetscMax(nz_max,nz);
1982cf12db73SBarry Smith     JJ  = jj + ii[i];
1983b8d659d7SLisandro Dalcin     for (j=0; j<nz; j++) {
1984aac34f13SBarry Smith       if (*JJ >= cstart) break;
1985aac34f13SBarry Smith       JJ++;
1986aac34f13SBarry Smith     }
1987aac34f13SBarry Smith     d = 0;
1988b8d659d7SLisandro Dalcin     for (; j<nz; j++) {
1989aac34f13SBarry Smith       if (*JJ++ >= cend) break;
1990aac34f13SBarry Smith       d++;
1991aac34f13SBarry Smith     }
1992aac34f13SBarry Smith     d_nnz[i] = d;
1993b8d659d7SLisandro Dalcin     o_nnz[i] = nz - d;
1994aac34f13SBarry Smith   }
1995aac34f13SBarry Smith   ierr = MatMPIBAIJSetPreallocation(B,bs,0,d_nnz,0,o_nnz);CHKERRQ(ierr);
1996aac34f13SBarry Smith   ierr = PetscFree(d_nnz);CHKERRQ(ierr);
1997aac34f13SBarry Smith 
1998b8d659d7SLisandro Dalcin   values = (PetscScalar*)V;
1999b8d659d7SLisandro Dalcin   if (!values) {
2000b8d659d7SLisandro Dalcin     ierr = PetscMalloc(bs*bs*(nz_max+1)*sizeof(PetscScalar),&values);CHKERRQ(ierr);
2001b8d659d7SLisandro Dalcin     ierr = PetscMemzero(values,bs*bs*nz_max*sizeof(PetscScalar));CHKERRQ(ierr);
2002b8d659d7SLisandro Dalcin   }
2003b8d659d7SLisandro Dalcin   for (i=0; i<m; i++) {
2004b8d659d7SLisandro Dalcin     PetscInt          row    = i + rstart;
2005cf12db73SBarry Smith     PetscInt          ncols  = ii[i+1] - ii[i];
2006cf12db73SBarry Smith     const PetscInt    *icols = jj + ii[i];
2007cf12db73SBarry Smith     const PetscScalar *svals = values + (V ? (bs*bs*ii[i]) : 0);
2008b8d659d7SLisandro Dalcin     ierr = MatSetValuesBlocked_MPIBAIJ(B,1,&row,ncols,icols,svals,INSERT_VALUES);CHKERRQ(ierr);
2009aac34f13SBarry Smith   }
2010aac34f13SBarry Smith 
2011b8d659d7SLisandro Dalcin   if (!V) { ierr = PetscFree(values);CHKERRQ(ierr); }
2012aac34f13SBarry Smith   ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
2013aac34f13SBarry Smith   ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
2014aac34f13SBarry Smith 
2015aac34f13SBarry Smith   PetscFunctionReturn(0);
2016aac34f13SBarry Smith }
2017b8d659d7SLisandro Dalcin EXTERN_C_END
2018aac34f13SBarry Smith 
2019aac34f13SBarry Smith #undef __FUNCT__
2020aac34f13SBarry Smith #define __FUNCT__ "MatMPIBAIJSetPreallocationCSR"
2021aac34f13SBarry Smith /*@C
2022aac34f13SBarry Smith    MatMPIBAIJSetPreallocationCSR - Allocates memory for a sparse parallel matrix in AIJ format
2023aac34f13SBarry Smith    (the default parallel PETSc format).
2024aac34f13SBarry Smith 
2025aac34f13SBarry Smith    Collective on MPI_Comm
2026aac34f13SBarry Smith 
2027aac34f13SBarry Smith    Input Parameters:
2028aac34f13SBarry Smith +  A - the matrix
2029aac34f13SBarry Smith .  i - the indices into j for the start of each local row (starts with zero)
2030aac34f13SBarry Smith .  j - the column indices for each local row (starts with zero) these must be sorted for each row
2031aac34f13SBarry Smith -  v - optional values in the matrix
2032aac34f13SBarry Smith 
2033aac34f13SBarry Smith    Level: developer
2034aac34f13SBarry Smith 
2035aac34f13SBarry Smith .keywords: matrix, aij, compressed row, sparse, parallel
2036aac34f13SBarry Smith 
2037aac34f13SBarry Smith .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatMPIBAIJSetPreallocation(), MatCreateMPIAIJ(), MPIAIJ
2038aac34f13SBarry Smith @*/
2039be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPIBAIJSetPreallocationCSR(Mat B,PetscInt bs,const PetscInt i[],const PetscInt j[], const PetscScalar v[])
2040aac34f13SBarry Smith {
2041aac34f13SBarry Smith   PetscErrorCode ierr,(*f)(Mat,PetscInt,const PetscInt[],const PetscInt[],const PetscScalar[]);
2042aac34f13SBarry Smith 
2043aac34f13SBarry Smith   PetscFunctionBegin;
2044aac34f13SBarry Smith   ierr = PetscObjectQueryFunction((PetscObject)B,"MatMPIBAIJSetPreallocationCSR_C",(void (**)(void))&f);CHKERRQ(ierr);
2045aac34f13SBarry Smith   if (f) {
2046aac34f13SBarry Smith     ierr = (*f)(B,bs,i,j,v);CHKERRQ(ierr);
2047aac34f13SBarry Smith   }
2048aac34f13SBarry Smith   PetscFunctionReturn(0);
2049aac34f13SBarry Smith }
2050aac34f13SBarry Smith 
2051d94109b8SHong Zhang EXTERN_C_BEGIN
20524a2ae208SSatish Balay #undef __FUNCT__
2053a23d5eceSKris Buschelman #define __FUNCT__ "MatMPIBAIJSetPreallocation_MPIBAIJ"
2054be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPIBAIJSetPreallocation_MPIBAIJ(Mat B,PetscInt bs,PetscInt d_nz,PetscInt *d_nnz,PetscInt o_nz,PetscInt *o_nnz)
2055a23d5eceSKris Buschelman {
2056a23d5eceSKris Buschelman   Mat_MPIBAIJ    *b;
2057dfbe8321SBarry Smith   PetscErrorCode ierr;
2058db4efbfdSBarry Smith   PetscInt       i, newbs = PetscAbs(bs);
2059a23d5eceSKris Buschelman 
2060a23d5eceSKris Buschelman   PetscFunctionBegin;
2061a23d5eceSKris Buschelman   B->preallocated = PETSC_TRUE;
2062db4efbfdSBarry Smith   if (bs < 0) {
20637adad957SLisandro Dalcin     ierr = PetscOptionsBegin(((PetscObject)B)->comm,((PetscObject)B)->prefix,"Options for MPIBAIJ matrix","Mat");CHKERRQ(ierr);
2064db4efbfdSBarry Smith       ierr = PetscOptionsInt("-mat_block_size","Set the blocksize used to store the matrix","MatMPIBAIJSetPreallocation",newbs,&newbs,PETSC_NULL);CHKERRQ(ierr);
20658c07d4e3SBarry Smith     ierr = PetscOptionsEnd();CHKERRQ(ierr);
2066db4efbfdSBarry Smith     bs   = PetscAbs(bs);
2067db4efbfdSBarry Smith   }
2068db4efbfdSBarry Smith   if ((d_nnz || o_nnz) && newbs != bs) {
2069db4efbfdSBarry Smith     SETERRQ(PETSC_ERR_ARG_WRONG,"Cannot change blocksize from command line if setting d_nnz or o_nnz");
2070db4efbfdSBarry Smith   }
2071db4efbfdSBarry Smith   bs = newbs;
2072db4efbfdSBarry Smith 
2073a23d5eceSKris Buschelman 
2074a23d5eceSKris Buschelman   if (bs < 1) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Invalid block size specified, must be positive");
2075a23d5eceSKris Buschelman   if (d_nz == PETSC_DEFAULT || d_nz == PETSC_DECIDE) d_nz = 5;
2076a23d5eceSKris Buschelman   if (o_nz == PETSC_DEFAULT || o_nz == PETSC_DECIDE) o_nz = 2;
207777431f27SBarry Smith   if (d_nz < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"d_nz cannot be less than 0: value %D",d_nz);
207877431f27SBarry Smith   if (o_nz < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"o_nz cannot be less than 0: value %D",o_nz);
2079899cda47SBarry Smith 
2080d0f46423SBarry Smith   B->rmap->bs  = bs;
2081d0f46423SBarry Smith   B->cmap->bs  = bs;
2082d0f46423SBarry Smith   ierr = PetscMapSetUp(B->rmap);CHKERRQ(ierr);
2083d0f46423SBarry Smith   ierr = PetscMapSetUp(B->cmap);CHKERRQ(ierr);
2084899cda47SBarry Smith 
2085a23d5eceSKris Buschelman   if (d_nnz) {
2086d0f46423SBarry Smith     for (i=0; i<B->rmap->n/bs; i++) {
208777431f27SBarry Smith       if (d_nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"d_nnz cannot be less than -1: local row %D value %D",i,d_nnz[i]);
2088a23d5eceSKris Buschelman     }
2089a23d5eceSKris Buschelman   }
2090a23d5eceSKris Buschelman   if (o_nnz) {
2091d0f46423SBarry Smith     for (i=0; i<B->rmap->n/bs; i++) {
209277431f27SBarry Smith       if (o_nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"o_nnz cannot be less than -1: local row %D value %D",i,o_nnz[i]);
2093a23d5eceSKris Buschelman     }
2094a23d5eceSKris Buschelman   }
2095a23d5eceSKris Buschelman 
2096a23d5eceSKris Buschelman   b = (Mat_MPIBAIJ*)B->data;
2097a23d5eceSKris Buschelman   b->bs2 = bs*bs;
2098d0f46423SBarry Smith   b->mbs = B->rmap->n/bs;
2099d0f46423SBarry Smith   b->nbs = B->cmap->n/bs;
2100d0f46423SBarry Smith   b->Mbs = B->rmap->N/bs;
2101d0f46423SBarry Smith   b->Nbs = B->cmap->N/bs;
2102a23d5eceSKris Buschelman 
2103a23d5eceSKris Buschelman   for (i=0; i<=b->size; i++) {
2104d0f46423SBarry Smith     b->rangebs[i] = B->rmap->range[i]/bs;
2105a23d5eceSKris Buschelman   }
2106d0f46423SBarry Smith   b->rstartbs = B->rmap->rstart/bs;
2107d0f46423SBarry Smith   b->rendbs   = B->rmap->rend/bs;
2108d0f46423SBarry Smith   b->cstartbs = B->cmap->rstart/bs;
2109d0f46423SBarry Smith   b->cendbs   = B->cmap->rend/bs;
2110a23d5eceSKris Buschelman 
2111f69a0ea3SMatthew Knepley   ierr = MatCreate(PETSC_COMM_SELF,&b->A);CHKERRQ(ierr);
2112d0f46423SBarry Smith   ierr = MatSetSizes(b->A,B->rmap->n,B->cmap->n,B->rmap->n,B->cmap->n);CHKERRQ(ierr);
21139c097c71SKris Buschelman   ierr = MatSetType(b->A,MATSEQBAIJ);CHKERRQ(ierr);
2114c60e587dSKris Buschelman   ierr = MatSeqBAIJSetPreallocation(b->A,bs,d_nz,d_nnz);CHKERRQ(ierr);
211552e6d16bSBarry Smith   ierr = PetscLogObjectParent(B,b->A);CHKERRQ(ierr);
2116f69a0ea3SMatthew Knepley   ierr = MatCreate(PETSC_COMM_SELF,&b->B);CHKERRQ(ierr);
2117d0f46423SBarry Smith   ierr = MatSetSizes(b->B,B->rmap->n,B->cmap->N,B->rmap->n,B->cmap->N);CHKERRQ(ierr);
21189c097c71SKris Buschelman   ierr = MatSetType(b->B,MATSEQBAIJ);CHKERRQ(ierr);
2119c60e587dSKris Buschelman   ierr = MatSeqBAIJSetPreallocation(b->B,bs,o_nz,o_nnz);CHKERRQ(ierr);
212052e6d16bSBarry Smith   ierr = PetscLogObjectParent(B,b->B);CHKERRQ(ierr);
2121c60e587dSKris Buschelman 
21227adad957SLisandro Dalcin   ierr = MatStashCreate_Private(((PetscObject)B)->comm,bs,&B->bstash);CHKERRQ(ierr);
2123a23d5eceSKris Buschelman 
2124a23d5eceSKris Buschelman   PetscFunctionReturn(0);
2125a23d5eceSKris Buschelman }
2126a23d5eceSKris Buschelman EXTERN_C_END
2127a23d5eceSKris Buschelman 
2128a23d5eceSKris Buschelman EXTERN_C_BEGIN
2129be1d678aSKris Buschelman EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatDiagonalScaleLocal_MPIBAIJ(Mat,Vec);
2130be1d678aSKris Buschelman EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatSetHashTableFactor_MPIBAIJ(Mat,PetscReal);
213192b32695SKris Buschelman EXTERN_C_END
21325bf65638SKris Buschelman 
21330bad9183SKris Buschelman /*MC
2134fafad747SKris Buschelman    MATMPIBAIJ - MATMPIBAIJ = "mpibaij" - A matrix type to be used for distributed block sparse matrices.
21350bad9183SKris Buschelman 
21360bad9183SKris Buschelman    Options Database Keys:
21378c07d4e3SBarry Smith + -mat_type mpibaij - sets the matrix type to "mpibaij" during a call to MatSetFromOptions()
21388c07d4e3SBarry Smith . -mat_block_size <bs> - set the blocksize used to store the matrix
21398c07d4e3SBarry Smith - -mat_use_hash_table <fact>
21400bad9183SKris Buschelman 
21410bad9183SKris Buschelman   Level: beginner
21420bad9183SKris Buschelman 
21430bad9183SKris Buschelman .seealso: MatCreateMPIBAIJ
21440bad9183SKris Buschelman M*/
21450bad9183SKris Buschelman 
214692b32695SKris Buschelman EXTERN_C_BEGIN
2147a23d5eceSKris Buschelman #undef __FUNCT__
21484a2ae208SSatish Balay #define __FUNCT__ "MatCreate_MPIBAIJ"
2149be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreate_MPIBAIJ(Mat B)
2150273d9f13SBarry Smith {
2151273d9f13SBarry Smith   Mat_MPIBAIJ    *b;
2152dfbe8321SBarry Smith   PetscErrorCode ierr;
2153273d9f13SBarry Smith   PetscTruth     flg;
2154273d9f13SBarry Smith 
2155273d9f13SBarry Smith   PetscFunctionBegin;
215638f2d2fdSLisandro Dalcin   ierr = PetscNewLog(B,Mat_MPIBAIJ,&b);CHKERRQ(ierr);
215782502324SSatish Balay   B->data = (void*)b;
215882502324SSatish Balay 
2159085a36d4SBarry Smith 
2160273d9f13SBarry Smith   ierr    = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr);
2161273d9f13SBarry Smith   B->mapping    = 0;
2162273d9f13SBarry Smith   B->assembled  = PETSC_FALSE;
2163273d9f13SBarry Smith 
2164273d9f13SBarry Smith   B->insertmode = NOT_SET_VALUES;
21657adad957SLisandro Dalcin   ierr = MPI_Comm_rank(((PetscObject)B)->comm,&b->rank);CHKERRQ(ierr);
21667adad957SLisandro Dalcin   ierr = MPI_Comm_size(((PetscObject)B)->comm,&b->size);CHKERRQ(ierr);
2167273d9f13SBarry Smith 
2168273d9f13SBarry Smith   /* build local table of row and column ownerships */
2169899cda47SBarry Smith   ierr = PetscMalloc((b->size+1)*sizeof(PetscInt),&b->rangebs);CHKERRQ(ierr);
2170273d9f13SBarry Smith 
2171273d9f13SBarry Smith   /* build cache for off array entries formed */
21727adad957SLisandro Dalcin   ierr = MatStashCreate_Private(((PetscObject)B)->comm,1,&B->stash);CHKERRQ(ierr);
2173273d9f13SBarry Smith   b->donotstash  = PETSC_FALSE;
2174273d9f13SBarry Smith   b->colmap      = PETSC_NULL;
2175273d9f13SBarry Smith   b->garray      = PETSC_NULL;
2176273d9f13SBarry Smith   b->roworiented = PETSC_TRUE;
2177273d9f13SBarry Smith 
2178273d9f13SBarry Smith   /* stuff used in block assembly */
2179273d9f13SBarry Smith   b->barray       = 0;
2180273d9f13SBarry Smith 
2181273d9f13SBarry Smith   /* stuff used for matrix vector multiply */
2182273d9f13SBarry Smith   b->lvec         = 0;
2183273d9f13SBarry Smith   b->Mvctx        = 0;
2184273d9f13SBarry Smith 
2185273d9f13SBarry Smith   /* stuff for MatGetRow() */
2186273d9f13SBarry Smith   b->rowindices   = 0;
2187273d9f13SBarry Smith   b->rowvalues    = 0;
2188273d9f13SBarry Smith   b->getrowactive = PETSC_FALSE;
2189273d9f13SBarry Smith 
2190273d9f13SBarry Smith   /* hash table stuff */
2191273d9f13SBarry Smith   b->ht           = 0;
2192273d9f13SBarry Smith   b->hd           = 0;
2193273d9f13SBarry Smith   b->ht_size      = 0;
2194273d9f13SBarry Smith   b->ht_flag      = PETSC_FALSE;
2195273d9f13SBarry Smith   b->ht_fact      = 0;
2196273d9f13SBarry Smith   b->ht_total_ct  = 0;
2197273d9f13SBarry Smith   b->ht_insert_ct = 0;
2198273d9f13SBarry Smith 
21997adad957SLisandro Dalcin   ierr = PetscOptionsBegin(((PetscObject)B)->comm,PETSC_NULL,"Options for loading MPIBAIJ matrix 1","Mat");CHKERRQ(ierr);
22008c07d4e3SBarry Smith     ierr = PetscOptionsTruth("-mat_use_hash_table","Use hash table to save memory in constructing matrix","MatSetOption",PETSC_FALSE,&flg,PETSC_NULL);CHKERRQ(ierr);
2201273d9f13SBarry Smith     if (flg) {
2202f6275e2eSBarry Smith       PetscReal fact = 1.39;
22034e0d8c25SBarry Smith       ierr = MatSetOption(B,MAT_USE_HASH_TABLE,PETSC_TRUE);CHKERRQ(ierr);
22048c07d4e3SBarry Smith       ierr = PetscOptionsReal("-mat_use_hash_table","Use hash table factor","MatMPIBAIJSetHashTableFactor",fact,&fact,PETSC_NULL);CHKERRQ(ierr);
2205273d9f13SBarry Smith       if (fact <= 1.0) fact = 1.39;
2206273d9f13SBarry Smith       ierr = MatMPIBAIJSetHashTableFactor(B,fact);CHKERRQ(ierr);
22071e2582c4SBarry Smith       ierr = PetscInfo1(B,"Hash table Factor used %5.2f\n",fact);CHKERRQ(ierr);
2208273d9f13SBarry Smith     }
22098c07d4e3SBarry Smith   ierr = PetscOptionsEnd();CHKERRQ(ierr);
22108c07d4e3SBarry Smith 
2211273d9f13SBarry Smith   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatStoreValues_C",
2212273d9f13SBarry Smith                                      "MatStoreValues_MPIBAIJ",
2213273d9f13SBarry Smith                                      MatStoreValues_MPIBAIJ);CHKERRQ(ierr);
2214273d9f13SBarry Smith   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatRetrieveValues_C",
2215273d9f13SBarry Smith                                      "MatRetrieveValues_MPIBAIJ",
2216273d9f13SBarry Smith                                      MatRetrieveValues_MPIBAIJ);CHKERRQ(ierr);
2217273d9f13SBarry Smith   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetDiagonalBlock_C",
2218273d9f13SBarry Smith                                      "MatGetDiagonalBlock_MPIBAIJ",
2219273d9f13SBarry Smith                                      MatGetDiagonalBlock_MPIBAIJ);CHKERRQ(ierr);
2220a23d5eceSKris Buschelman   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatMPIBAIJSetPreallocation_C",
2221a23d5eceSKris Buschelman                                      "MatMPIBAIJSetPreallocation_MPIBAIJ",
2222a23d5eceSKris Buschelman                                      MatMPIBAIJSetPreallocation_MPIBAIJ);CHKERRQ(ierr);
2223aac34f13SBarry Smith   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatMPIBAIJSetPreallocationCSR_C",
222444ec7894SLisandro Dalcin 				     "MatMPIBAIJSetPreallocationCSR_MPIBAIJ",
2225aac34f13SBarry Smith 				     MatMPIBAIJSetPreallocationCSR_MPIBAIJ);CHKERRQ(ierr);
222692b32695SKris Buschelman   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatDiagonalScaleLocal_C",
222792b32695SKris Buschelman                                      "MatDiagonalScaleLocal_MPIBAIJ",
222892b32695SKris Buschelman                                      MatDiagonalScaleLocal_MPIBAIJ);CHKERRQ(ierr);
22295bf65638SKris Buschelman   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatSetHashTableFactor_C",
22305bf65638SKris Buschelman                                      "MatSetHashTableFactor_MPIBAIJ",
22315bf65638SKris Buschelman                                      MatSetHashTableFactor_MPIBAIJ);CHKERRQ(ierr);
223217667f90SBarry Smith   ierr = PetscObjectChangeTypeName((PetscObject)B,MATMPIBAIJ);CHKERRQ(ierr);
2233273d9f13SBarry Smith   PetscFunctionReturn(0);
2234273d9f13SBarry Smith }
2235273d9f13SBarry Smith EXTERN_C_END
2236273d9f13SBarry Smith 
2237209238afSKris Buschelman /*MC
2238002d173eSKris Buschelman    MATBAIJ - MATBAIJ = "baij" - A matrix type to be used for block sparse matrices.
2239209238afSKris Buschelman 
2240209238afSKris Buschelman    This matrix type is identical to MATSEQBAIJ when constructed with a single process communicator,
2241209238afSKris Buschelman    and MATMPIBAIJ otherwise.
2242209238afSKris Buschelman 
2243209238afSKris Buschelman    Options Database Keys:
2244209238afSKris Buschelman . -mat_type baij - sets the matrix type to "baij" during a call to MatSetFromOptions()
2245209238afSKris Buschelman 
2246209238afSKris Buschelman   Level: beginner
2247209238afSKris Buschelman 
2248aac34f13SBarry Smith .seealso: MatCreateMPIBAIJ(),MATSEQBAIJ,MATMPIBAIJ, MatMPIBAIJSetPreallocation(), MatMPIBAIJSetPreallocationCSR()
2249209238afSKris Buschelman M*/
2250209238afSKris Buschelman 
2251209238afSKris Buschelman EXTERN_C_BEGIN
2252209238afSKris Buschelman #undef __FUNCT__
2253209238afSKris Buschelman #define __FUNCT__ "MatCreate_BAIJ"
2254be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreate_BAIJ(Mat A)
2255dfbe8321SBarry Smith {
22566849ba73SBarry Smith   PetscErrorCode ierr;
2257b24ad042SBarry Smith   PetscMPIInt    size;
2258209238afSKris Buschelman 
2259209238afSKris Buschelman   PetscFunctionBegin;
22607adad957SLisandro Dalcin   ierr = MPI_Comm_size(((PetscObject)A)->comm,&size);CHKERRQ(ierr);
2261209238afSKris Buschelman   if (size == 1) {
2262209238afSKris Buschelman     ierr = MatSetType(A,MATSEQBAIJ);CHKERRQ(ierr);
2263209238afSKris Buschelman   } else {
2264209238afSKris Buschelman     ierr = MatSetType(A,MATMPIBAIJ);CHKERRQ(ierr);
2265209238afSKris Buschelman   }
2266209238afSKris Buschelman   PetscFunctionReturn(0);
2267209238afSKris Buschelman }
2268209238afSKris Buschelman EXTERN_C_END
2269209238afSKris Buschelman 
22704a2ae208SSatish Balay #undef __FUNCT__
22714a2ae208SSatish Balay #define __FUNCT__ "MatMPIBAIJSetPreallocation"
2272273d9f13SBarry Smith /*@C
2273aac34f13SBarry Smith    MatMPIBAIJSetPreallocation - Allocates memory for a sparse parallel matrix in block AIJ format
2274273d9f13SBarry Smith    (block compressed row).  For good matrix assembly performance
2275273d9f13SBarry Smith    the user should preallocate the matrix storage by setting the parameters
2276273d9f13SBarry Smith    d_nz (or d_nnz) and o_nz (or o_nnz).  By setting these parameters accurately,
2277273d9f13SBarry Smith    performance can be increased by more than a factor of 50.
2278273d9f13SBarry Smith 
2279273d9f13SBarry Smith    Collective on Mat
2280273d9f13SBarry Smith 
2281273d9f13SBarry Smith    Input Parameters:
2282273d9f13SBarry Smith +  A - the matrix
2283273d9f13SBarry Smith .  bs   - size of blockk
2284273d9f13SBarry Smith .  d_nz  - number of block nonzeros per block row in diagonal portion of local
2285273d9f13SBarry Smith            submatrix  (same for all local rows)
2286273d9f13SBarry Smith .  d_nnz - array containing the number of block nonzeros in the various block rows
2287273d9f13SBarry Smith            of the in diagonal portion of the local (possibly different for each block
2288273d9f13SBarry Smith            row) or PETSC_NULL.  You must leave room for the diagonal entry even if it is zero.
2289273d9f13SBarry Smith .  o_nz  - number of block nonzeros per block row in the off-diagonal portion of local
2290273d9f13SBarry Smith            submatrix (same for all local rows).
2291273d9f13SBarry Smith -  o_nnz - array containing the number of nonzeros in the various block rows of the
2292273d9f13SBarry Smith            off-diagonal portion of the local submatrix (possibly different for
2293273d9f13SBarry Smith            each block row) or PETSC_NULL.
2294273d9f13SBarry Smith 
229549a6f317SBarry Smith    If the *_nnz parameter is given then the *_nz parameter is ignored
2296273d9f13SBarry Smith 
2297273d9f13SBarry Smith    Options Database Keys:
22988c07d4e3SBarry Smith +   -mat_block_size - size of the blocks to use
22998c07d4e3SBarry Smith -   -mat_use_hash_table <fact>
2300273d9f13SBarry Smith 
2301273d9f13SBarry Smith    Notes:
2302273d9f13SBarry Smith    If PETSC_DECIDE or  PETSC_DETERMINE is used for a particular argument on one processor
2303273d9f13SBarry Smith    than it must be used on all processors that share the object for that argument.
2304273d9f13SBarry Smith 
2305273d9f13SBarry Smith    Storage Information:
2306273d9f13SBarry Smith    For a square global matrix we define each processor's diagonal portion
2307273d9f13SBarry Smith    to be its local rows and the corresponding columns (a square submatrix);
2308273d9f13SBarry Smith    each processor's off-diagonal portion encompasses the remainder of the
2309273d9f13SBarry Smith    local matrix (a rectangular submatrix).
2310273d9f13SBarry Smith 
2311273d9f13SBarry Smith    The user can specify preallocated storage for the diagonal part of
2312273d9f13SBarry Smith    the local submatrix with either d_nz or d_nnz (not both).  Set
2313273d9f13SBarry Smith    d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic
2314273d9f13SBarry Smith    memory allocation.  Likewise, specify preallocated storage for the
2315273d9f13SBarry Smith    off-diagonal part of the local submatrix with o_nz or o_nnz (not both).
2316273d9f13SBarry Smith 
2317273d9f13SBarry Smith    Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
2318273d9f13SBarry Smith    the figure below we depict these three local rows and all columns (0-11).
2319273d9f13SBarry Smith 
2320273d9f13SBarry Smith .vb
2321273d9f13SBarry Smith            0 1 2 3 4 5 6 7 8 9 10 11
2322273d9f13SBarry Smith           -------------------
2323273d9f13SBarry Smith    row 3  |  o o o d d d o o o o o o
2324273d9f13SBarry Smith    row 4  |  o o o d d d o o o o o o
2325273d9f13SBarry Smith    row 5  |  o o o d d d o o o o o o
2326273d9f13SBarry Smith           -------------------
2327273d9f13SBarry Smith .ve
2328273d9f13SBarry Smith 
2329273d9f13SBarry Smith    Thus, any entries in the d locations are stored in the d (diagonal)
2330273d9f13SBarry Smith    submatrix, and any entries in the o locations are stored in the
2331273d9f13SBarry Smith    o (off-diagonal) submatrix.  Note that the d and the o submatrices are
2332273d9f13SBarry Smith    stored simply in the MATSEQBAIJ format for compressed row storage.
2333273d9f13SBarry Smith 
2334273d9f13SBarry Smith    Now d_nz should indicate the number of block nonzeros per row in the d matrix,
2335273d9f13SBarry Smith    and o_nz should indicate the number of block nonzeros per row in the o matrix.
2336273d9f13SBarry Smith    In general, for PDE problems in which most nonzeros are near the diagonal,
2337273d9f13SBarry Smith    one expects d_nz >> o_nz.   For large problems you MUST preallocate memory
2338273d9f13SBarry Smith    or you will get TERRIBLE performance; see the users' manual chapter on
2339273d9f13SBarry Smith    matrices.
2340273d9f13SBarry Smith 
2341aa95bbe8SBarry Smith    You can call MatGetInfo() to get information on how effective the preallocation was;
2342aa95bbe8SBarry Smith    for example the fields mallocs,nz_allocated,nz_used,nz_unneeded;
2343aa95bbe8SBarry Smith    You can also run with the option -info and look for messages with the string
2344aa95bbe8SBarry Smith    malloc in them to see if additional memory allocation was needed.
2345aa95bbe8SBarry Smith 
2346273d9f13SBarry Smith    Level: intermediate
2347273d9f13SBarry Smith 
2348273d9f13SBarry Smith .keywords: matrix, block, aij, compressed row, sparse, parallel
2349273d9f13SBarry Smith 
2350aac34f13SBarry Smith .seealso: MatCreate(), MatCreateSeqBAIJ(), MatSetValues(), MatCreateMPIBAIJ(), MatMPIBAIJSetPreallocationCSR()
2351273d9f13SBarry Smith @*/
2352be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPIBAIJSetPreallocation(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[])
2353273d9f13SBarry Smith {
2354b24ad042SBarry Smith   PetscErrorCode ierr,(*f)(Mat,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[]);
2355273d9f13SBarry Smith 
2356273d9f13SBarry Smith   PetscFunctionBegin;
2357a23d5eceSKris Buschelman   ierr = PetscObjectQueryFunction((PetscObject)B,"MatMPIBAIJSetPreallocation_C",(void (**)(void))&f);CHKERRQ(ierr);
2358a23d5eceSKris Buschelman   if (f) {
2359a23d5eceSKris Buschelman     ierr = (*f)(B,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr);
2360273d9f13SBarry Smith   }
2361273d9f13SBarry Smith   PetscFunctionReturn(0);
2362273d9f13SBarry Smith }
2363273d9f13SBarry Smith 
23644a2ae208SSatish Balay #undef __FUNCT__
23654a2ae208SSatish Balay #define __FUNCT__ "MatCreateMPIBAIJ"
236679bdfe76SSatish Balay /*@C
236779bdfe76SSatish Balay    MatCreateMPIBAIJ - Creates a sparse parallel matrix in block AIJ format
236879bdfe76SSatish Balay    (block compressed row).  For good matrix assembly performance
236979bdfe76SSatish Balay    the user should preallocate the matrix storage by setting the parameters
237079bdfe76SSatish Balay    d_nz (or d_nnz) and o_nz (or o_nnz).  By setting these parameters accurately,
237179bdfe76SSatish Balay    performance can be increased by more than a factor of 50.
237279bdfe76SSatish Balay 
2373db81eaa0SLois Curfman McInnes    Collective on MPI_Comm
2374db81eaa0SLois Curfman McInnes 
237579bdfe76SSatish Balay    Input Parameters:
2376db81eaa0SLois Curfman McInnes +  comm - MPI communicator
237779bdfe76SSatish Balay .  bs   - size of blockk
237879bdfe76SSatish Balay .  m - number of local rows (or PETSC_DECIDE to have calculated if M is given)
237992e8d321SLois Curfman McInnes            This value should be the same as the local size used in creating the
238092e8d321SLois Curfman McInnes            y vector for the matrix-vector product y = Ax.
238192e8d321SLois Curfman McInnes .  n - number of local columns (or PETSC_DECIDE to have calculated if N is given)
238292e8d321SLois Curfman McInnes            This value should be the same as the local size used in creating the
238392e8d321SLois Curfman McInnes            x vector for the matrix-vector product y = Ax.
2384be79a94dSBarry Smith .  M - number of global rows (or PETSC_DETERMINE to have calculated if m is given)
2385be79a94dSBarry Smith .  N - number of global columns (or PETSC_DETERMINE to have calculated if n is given)
238647a75d0bSBarry Smith .  d_nz  - number of nonzero blocks per block row in diagonal portion of local
238779bdfe76SSatish Balay            submatrix  (same for all local rows)
238847a75d0bSBarry Smith .  d_nnz - array containing the number of nonzero blocks in the various block rows
238992e8d321SLois Curfman McInnes            of the in diagonal portion of the local (possibly different for each block
2390db81eaa0SLois Curfman McInnes            row) or PETSC_NULL.  You must leave room for the diagonal entry even if it is zero.
239147a75d0bSBarry Smith .  o_nz  - number of nonzero blocks per block row in the off-diagonal portion of local
239279bdfe76SSatish Balay            submatrix (same for all local rows).
239347a75d0bSBarry Smith -  o_nnz - array containing the number of nonzero blocks in the various block rows of the
239492e8d321SLois Curfman McInnes            off-diagonal portion of the local submatrix (possibly different for
239592e8d321SLois Curfman McInnes            each block row) or PETSC_NULL.
239679bdfe76SSatish Balay 
239779bdfe76SSatish Balay    Output Parameter:
239879bdfe76SSatish Balay .  A - the matrix
239979bdfe76SSatish Balay 
2400db81eaa0SLois Curfman McInnes    Options Database Keys:
24018c07d4e3SBarry Smith +   -mat_block_size - size of the blocks to use
24028c07d4e3SBarry Smith -   -mat_use_hash_table <fact>
24033ffaccefSLois Curfman McInnes 
2404175b88e8SBarry Smith    It is recommended that one use the MatCreate(), MatSetType() and/or MatSetFromOptions(),
2405175b88e8SBarry Smith    MatXXXXSetPreallocation() paradgm instead of this routine directly. This is definitely
2406175b88e8SBarry Smith    true if you plan to use the external direct solvers such as SuperLU, MUMPS or Spooles.
2407175b88e8SBarry Smith    [MatXXXXSetPreallocation() is, for example, MatSeqAIJSetPreallocation]
2408175b88e8SBarry Smith 
2409b259b22eSLois Curfman McInnes    Notes:
241049a6f317SBarry Smith    If the *_nnz parameter is given then the *_nz parameter is ignored
241149a6f317SBarry Smith 
241247a75d0bSBarry Smith    A nonzero block is any block that as 1 or more nonzeros in it
241347a75d0bSBarry Smith 
241479bdfe76SSatish Balay    The user MUST specify either the local or global matrix dimensions
241579bdfe76SSatish Balay    (possibly both).
241679bdfe76SSatish Balay 
2417be79a94dSBarry Smith    If PETSC_DECIDE or  PETSC_DETERMINE is used for a particular argument on one processor
2418be79a94dSBarry Smith    than it must be used on all processors that share the object for that argument.
2419be79a94dSBarry Smith 
242079bdfe76SSatish Balay    Storage Information:
242179bdfe76SSatish Balay    For a square global matrix we define each processor's diagonal portion
242279bdfe76SSatish Balay    to be its local rows and the corresponding columns (a square submatrix);
242379bdfe76SSatish Balay    each processor's off-diagonal portion encompasses the remainder of the
242479bdfe76SSatish Balay    local matrix (a rectangular submatrix).
242579bdfe76SSatish Balay 
242679bdfe76SSatish Balay    The user can specify preallocated storage for the diagonal part of
242779bdfe76SSatish Balay    the local submatrix with either d_nz or d_nnz (not both).  Set
242879bdfe76SSatish Balay    d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic
242979bdfe76SSatish Balay    memory allocation.  Likewise, specify preallocated storage for the
243079bdfe76SSatish Balay    off-diagonal part of the local submatrix with o_nz or o_nnz (not both).
243179bdfe76SSatish Balay 
243279bdfe76SSatish Balay    Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
243379bdfe76SSatish Balay    the figure below we depict these three local rows and all columns (0-11).
243479bdfe76SSatish Balay 
2435db81eaa0SLois Curfman McInnes .vb
2436db81eaa0SLois Curfman McInnes            0 1 2 3 4 5 6 7 8 9 10 11
2437db81eaa0SLois Curfman McInnes           -------------------
2438db81eaa0SLois Curfman McInnes    row 3  |  o o o d d d o o o o o o
2439db81eaa0SLois Curfman McInnes    row 4  |  o o o d d d o o o o o o
2440db81eaa0SLois Curfman McInnes    row 5  |  o o o d d d o o o o o o
2441db81eaa0SLois Curfman McInnes           -------------------
2442db81eaa0SLois Curfman McInnes .ve
244379bdfe76SSatish Balay 
244479bdfe76SSatish Balay    Thus, any entries in the d locations are stored in the d (diagonal)
244579bdfe76SSatish Balay    submatrix, and any entries in the o locations are stored in the
244679bdfe76SSatish Balay    o (off-diagonal) submatrix.  Note that the d and the o submatrices are
244757b952d6SSatish Balay    stored simply in the MATSEQBAIJ format for compressed row storage.
244879bdfe76SSatish Balay 
2449d64ed03dSBarry Smith    Now d_nz should indicate the number of block nonzeros per row in the d matrix,
2450d64ed03dSBarry Smith    and o_nz should indicate the number of block nonzeros per row in the o matrix.
245179bdfe76SSatish Balay    In general, for PDE problems in which most nonzeros are near the diagonal,
245292e8d321SLois Curfman McInnes    one expects d_nz >> o_nz.   For large problems you MUST preallocate memory
245392e8d321SLois Curfman McInnes    or you will get TERRIBLE performance; see the users' manual chapter on
24546da5968aSLois Curfman McInnes    matrices.
245579bdfe76SSatish Balay 
2456027ccd11SLois Curfman McInnes    Level: intermediate
2457027ccd11SLois Curfman McInnes 
245892e8d321SLois Curfman McInnes .keywords: matrix, block, aij, compressed row, sparse, parallel
245979bdfe76SSatish Balay 
2460aac34f13SBarry Smith .seealso: MatCreate(), MatCreateSeqBAIJ(), MatSetValues(), MatCreateMPIBAIJ(), MatMPIBAIJSetPreallocation(), MatMPIBAIJSetPreallocationCSR()
246179bdfe76SSatish Balay @*/
2462be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreateMPIBAIJ(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[],Mat *A)
246379bdfe76SSatish Balay {
24646849ba73SBarry Smith   PetscErrorCode ierr;
2465b24ad042SBarry Smith   PetscMPIInt    size;
246679bdfe76SSatish Balay 
2467d64ed03dSBarry Smith   PetscFunctionBegin;
2468f69a0ea3SMatthew Knepley   ierr = MatCreate(comm,A);CHKERRQ(ierr);
2469f69a0ea3SMatthew Knepley   ierr = MatSetSizes(*A,m,n,M,N);CHKERRQ(ierr);
2470d132466eSBarry Smith   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
2471273d9f13SBarry Smith   if (size > 1) {
2472273d9f13SBarry Smith     ierr = MatSetType(*A,MATMPIBAIJ);CHKERRQ(ierr);
2473273d9f13SBarry Smith     ierr = MatMPIBAIJSetPreallocation(*A,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr);
2474273d9f13SBarry Smith   } else {
2475273d9f13SBarry Smith     ierr = MatSetType(*A,MATSEQBAIJ);CHKERRQ(ierr);
2476273d9f13SBarry Smith     ierr = MatSeqBAIJSetPreallocation(*A,bs,d_nz,d_nnz);CHKERRQ(ierr);
24773914022bSBarry Smith   }
24783a40ed3dSBarry Smith   PetscFunctionReturn(0);
247979bdfe76SSatish Balay }
2480026e39d0SSatish Balay 
24814a2ae208SSatish Balay #undef __FUNCT__
24824a2ae208SSatish Balay #define __FUNCT__ "MatDuplicate_MPIBAIJ"
24836849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIBAIJ(Mat matin,MatDuplicateOption cpvalues,Mat *newmat)
24840ac07820SSatish Balay {
24850ac07820SSatish Balay   Mat            mat;
24860ac07820SSatish Balay   Mat_MPIBAIJ    *a,*oldmat = (Mat_MPIBAIJ*)matin->data;
2487dfbe8321SBarry Smith   PetscErrorCode ierr;
2488b24ad042SBarry Smith   PetscInt       len=0;
24890ac07820SSatish Balay 
2490d64ed03dSBarry Smith   PetscFunctionBegin;
24910ac07820SSatish Balay   *newmat       = 0;
24927adad957SLisandro Dalcin   ierr = MatCreate(((PetscObject)matin)->comm,&mat);CHKERRQ(ierr);
2493d0f46423SBarry Smith   ierr = MatSetSizes(mat,matin->rmap->n,matin->cmap->n,matin->rmap->N,matin->cmap->N);CHKERRQ(ierr);
24947adad957SLisandro Dalcin   ierr = MatSetType(mat,((PetscObject)matin)->type_name);CHKERRQ(ierr);
24951d5dac46SHong Zhang   ierr = PetscMemcpy(mat->ops,matin->ops,sizeof(struct _MatOps));CHKERRQ(ierr);
24967fff6886SHong Zhang 
24974beb1cfeSHong Zhang   mat->factor       = matin->factor;
2498273d9f13SBarry Smith   mat->preallocated = PETSC_TRUE;
24990ac07820SSatish Balay   mat->assembled    = PETSC_TRUE;
25007fff6886SHong Zhang   mat->insertmode   = NOT_SET_VALUES;
25017fff6886SHong Zhang 
2502273d9f13SBarry Smith   a      = (Mat_MPIBAIJ*)mat->data;
2503d0f46423SBarry Smith   mat->rmap->bs  = matin->rmap->bs;
25040ac07820SSatish Balay   a->bs2   = oldmat->bs2;
25050ac07820SSatish Balay   a->mbs   = oldmat->mbs;
25060ac07820SSatish Balay   a->nbs   = oldmat->nbs;
25070ac07820SSatish Balay   a->Mbs   = oldmat->Mbs;
25080ac07820SSatish Balay   a->Nbs   = oldmat->Nbs;
25090ac07820SSatish Balay 
2510d0f46423SBarry Smith   ierr = PetscMapCopy(((PetscObject)matin)->comm,matin->rmap,mat->rmap);CHKERRQ(ierr);
2511d0f46423SBarry Smith   ierr = PetscMapCopy(((PetscObject)matin)->comm,matin->cmap,mat->cmap);CHKERRQ(ierr);
2512899cda47SBarry Smith 
25130ac07820SSatish Balay   a->size         = oldmat->size;
25140ac07820SSatish Balay   a->rank         = oldmat->rank;
2515aef5e8e0SSatish Balay   a->donotstash   = oldmat->donotstash;
2516aef5e8e0SSatish Balay   a->roworiented  = oldmat->roworiented;
2517aef5e8e0SSatish Balay   a->rowindices   = 0;
25180ac07820SSatish Balay   a->rowvalues    = 0;
25190ac07820SSatish Balay   a->getrowactive = PETSC_FALSE;
252030793edcSSatish Balay   a->barray       = 0;
2521899cda47SBarry Smith   a->rstartbs     = oldmat->rstartbs;
2522899cda47SBarry Smith   a->rendbs       = oldmat->rendbs;
2523899cda47SBarry Smith   a->cstartbs     = oldmat->cstartbs;
2524899cda47SBarry Smith   a->cendbs       = oldmat->cendbs;
25250ac07820SSatish Balay 
2526133cdb44SSatish Balay   /* hash table stuff */
2527133cdb44SSatish Balay   a->ht           = 0;
2528133cdb44SSatish Balay   a->hd           = 0;
2529133cdb44SSatish Balay   a->ht_size      = 0;
2530133cdb44SSatish Balay   a->ht_flag      = oldmat->ht_flag;
253125fdafccSSatish Balay   a->ht_fact      = oldmat->ht_fact;
2532133cdb44SSatish Balay   a->ht_total_ct  = 0;
2533133cdb44SSatish Balay   a->ht_insert_ct = 0;
2534133cdb44SSatish Balay 
2535899cda47SBarry Smith   ierr = PetscMemcpy(a->rangebs,oldmat->rangebs,(a->size+1)*sizeof(PetscInt));CHKERRQ(ierr);
25367adad957SLisandro Dalcin   ierr = MatStashCreate_Private(((PetscObject)matin)->comm,1,&mat->stash);CHKERRQ(ierr);
2537d0f46423SBarry Smith   ierr = MatStashCreate_Private(((PetscObject)matin)->comm,matin->rmap->bs,&mat->bstash);CHKERRQ(ierr);
25380ac07820SSatish Balay   if (oldmat->colmap) {
2539aa482453SBarry Smith #if defined (PETSC_USE_CTABLE)
25400f5bd95cSBarry Smith   ierr = PetscTableCreateCopy(oldmat->colmap,&a->colmap);CHKERRQ(ierr);
254148e59246SSatish Balay #else
2542b24ad042SBarry Smith   ierr = PetscMalloc((a->Nbs)*sizeof(PetscInt),&a->colmap);CHKERRQ(ierr);
254352e6d16bSBarry Smith   ierr = PetscLogObjectMemory(mat,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr);
2544b24ad042SBarry Smith   ierr = PetscMemcpy(a->colmap,oldmat->colmap,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr);
254548e59246SSatish Balay #endif
25460ac07820SSatish Balay   } else a->colmap = 0;
25474beb1cfeSHong Zhang 
25480ac07820SSatish Balay   if (oldmat->garray && (len = ((Mat_SeqBAIJ*)(oldmat->B->data))->nbs)) {
2549b24ad042SBarry Smith     ierr = PetscMalloc(len*sizeof(PetscInt),&a->garray);CHKERRQ(ierr);
255052e6d16bSBarry Smith     ierr = PetscLogObjectMemory(mat,len*sizeof(PetscInt));CHKERRQ(ierr);
2551b24ad042SBarry Smith     ierr = PetscMemcpy(a->garray,oldmat->garray,len*sizeof(PetscInt));CHKERRQ(ierr);
25520ac07820SSatish Balay   } else a->garray = 0;
25530ac07820SSatish Balay 
25540ac07820SSatish Balay   ierr = VecDuplicate(oldmat->lvec,&a->lvec);CHKERRQ(ierr);
255552e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->lvec);CHKERRQ(ierr);
25560ac07820SSatish Balay   ierr = VecScatterCopy(oldmat->Mvctx,&a->Mvctx);CHKERRQ(ierr);
255752e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->Mvctx);CHKERRQ(ierr);
25587fff6886SHong Zhang 
25592e8a6d31SBarry Smith   ierr =  MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr);
256052e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->A);CHKERRQ(ierr);
25612e8a6d31SBarry Smith   ierr =  MatDuplicate(oldmat->B,cpvalues,&a->B);CHKERRQ(ierr);
256252e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->B);CHKERRQ(ierr);
25637adad957SLisandro Dalcin   ierr = PetscFListDuplicate(((PetscObject)matin)->qlist,&((PetscObject)mat)->qlist);CHKERRQ(ierr);
25640ac07820SSatish Balay   *newmat = mat;
25654beb1cfeSHong Zhang 
25663a40ed3dSBarry Smith   PetscFunctionReturn(0);
25670ac07820SSatish Balay }
256857b952d6SSatish Balay 
2569e090d566SSatish Balay #include "petscsys.h"
257057b952d6SSatish Balay 
25714a2ae208SSatish Balay #undef __FUNCT__
25724a2ae208SSatish Balay #define __FUNCT__ "MatLoad_MPIBAIJ"
2573a313700dSBarry Smith PetscErrorCode MatLoad_MPIBAIJ(PetscViewer viewer, const MatType type,Mat *newmat)
257457b952d6SSatish Balay {
257557b952d6SSatish Balay   Mat            A;
25766849ba73SBarry Smith   PetscErrorCode ierr;
2577b24ad042SBarry Smith   int            fd;
2578b24ad042SBarry Smith   PetscInt       i,nz,j,rstart,rend;
257987828ca2SBarry Smith   PetscScalar    *vals,*buf;
258057b952d6SSatish Balay   MPI_Comm       comm = ((PetscObject)viewer)->comm;
258157b952d6SSatish Balay   MPI_Status     status;
2582b24ad042SBarry Smith   PetscMPIInt    rank,size,maxnz;
2583b24ad042SBarry Smith   PetscInt       header[4],*rowlengths = 0,M,N,m,*rowners,*cols;
2584910ba992SMatthew Knepley   PetscInt       *locrowlens = PETSC_NULL,*procsnz = PETSC_NULL,*browners = PETSC_NULL;
2585167e7480SBarry Smith   PetscInt       jj,*mycols,*ibuf,bs=1,Mbs,mbs,extra_rows,mmax;
2586dc231df0SBarry Smith   PetscMPIInt    tag = ((PetscObject)viewer)->tag;
2587910ba992SMatthew Knepley   PetscInt       *dlens = PETSC_NULL,*odlens = PETSC_NULL,*mask = PETSC_NULL,*masked1 = PETSC_NULL,*masked2 = PETSC_NULL,rowcount,odcount;
2588dc231df0SBarry Smith   PetscInt       dcount,kmax,k,nzcount,tmp,mend;
258957b952d6SSatish Balay 
2590d64ed03dSBarry Smith   PetscFunctionBegin;
259177925062SSatish Balay   ierr = PetscOptionsBegin(comm,PETSC_NULL,"Options for loading MPIBAIJ matrix 2","Mat");CHKERRQ(ierr);
25928c07d4e3SBarry Smith     ierr = PetscOptionsInt("-matload_block_size","Set the blocksize used to store the matrix","MatLoad",bs,&bs,PETSC_NULL);CHKERRQ(ierr);
25938c07d4e3SBarry Smith   ierr = PetscOptionsEnd();CHKERRQ(ierr);
259457b952d6SSatish Balay 
2595d132466eSBarry Smith   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
2596d132466eSBarry Smith   ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr);
259757b952d6SSatish Balay   if (!rank) {
2598b0a32e0cSBarry Smith     ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr);
2599e5638eb3SBarry Smith     ierr = PetscBinaryRead(fd,(char *)header,4,PETSC_INT);CHKERRQ(ierr);
2600552e946dSBarry Smith     if (header[0] != MAT_FILE_COOKIE) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"not matrix object");
26016c5fab8fSBarry Smith   }
2602d64ed03dSBarry Smith 
2603b24ad042SBarry Smith   ierr = MPI_Bcast(header+1,3,MPIU_INT,0,comm);CHKERRQ(ierr);
260457b952d6SSatish Balay   M = header[1]; N = header[2];
260557b952d6SSatish Balay 
260629bbc08cSBarry Smith   if (M != N) SETERRQ(PETSC_ERR_SUP,"Can only do square matrices");
260757b952d6SSatish Balay 
260857b952d6SSatish Balay   /*
260957b952d6SSatish Balay      This code adds extra rows to make sure the number of rows is
261057b952d6SSatish Balay      divisible by the blocksize
261157b952d6SSatish Balay   */
261257b952d6SSatish Balay   Mbs        = M/bs;
2613dc231df0SBarry Smith   extra_rows = bs - M + bs*Mbs;
261457b952d6SSatish Balay   if (extra_rows == bs) extra_rows = 0;
261557b952d6SSatish Balay   else                  Mbs++;
261657b952d6SSatish Balay   if (extra_rows && !rank) {
26171e2582c4SBarry Smith     ierr = PetscInfo(viewer,"Padding loaded matrix to match blocksize\n");CHKERRQ(ierr);
261857b952d6SSatish Balay   }
2619537820f0SBarry Smith 
262057b952d6SSatish Balay   /* determine ownership of all rows */
262157b952d6SSatish Balay   mbs        = Mbs/size + ((Mbs % size) > rank);
262257b952d6SSatish Balay   m          = mbs*bs;
2623dc231df0SBarry Smith   ierr       = PetscMalloc2(size+1,PetscInt,&rowners,size+1,PetscInt,&browners);CHKERRQ(ierr);
2624b24ad042SBarry Smith   ierr       = MPI_Allgather(&mbs,1,MPIU_INT,rowners+1,1,MPIU_INT,comm);CHKERRQ(ierr);
2625167e7480SBarry Smith 
2626167e7480SBarry Smith   /* process 0 needs enough room for process with most rows */
2627167e7480SBarry Smith   if (!rank) {
2628167e7480SBarry Smith     mmax = rowners[1];
2629167e7480SBarry Smith     for (i=2; i<size; i++) {
2630167e7480SBarry Smith       mmax = PetscMax(mmax,rowners[i]);
2631167e7480SBarry Smith     }
2632ca02efcfSSatish Balay     mmax*=bs;
2633167e7480SBarry Smith   } else mmax = m;
2634167e7480SBarry Smith 
263557b952d6SSatish Balay   rowners[0] = 0;
2636cee3aa6bSSatish Balay   for (i=2; i<=size; i++)  rowners[i] += rowners[i-1];
2637cee3aa6bSSatish Balay   for (i=0; i<=size;  i++) browners[i] = rowners[i]*bs;
263857b952d6SSatish Balay   rstart = rowners[rank];
263957b952d6SSatish Balay   rend   = rowners[rank+1];
264057b952d6SSatish Balay 
264157b952d6SSatish Balay   /* distribute row lengths to all processors */
264219c38ff2SBarry Smith   ierr = PetscMalloc((mmax+1)*sizeof(PetscInt),&locrowlens);CHKERRQ(ierr);
264357b952d6SSatish Balay   if (!rank) {
2644dc231df0SBarry Smith     mend = m;
2645dc231df0SBarry Smith     if (size == 1) mend = mend - extra_rows;
2646dc231df0SBarry Smith     ierr = PetscBinaryRead(fd,locrowlens,mend,PETSC_INT);CHKERRQ(ierr);
2647dc231df0SBarry Smith     for (j=mend; j<m; j++) locrowlens[j] = 1;
2648dc231df0SBarry Smith     ierr = PetscMalloc(m*sizeof(PetscInt),&rowlengths);CHKERRQ(ierr);
2649b24ad042SBarry Smith     ierr = PetscMalloc(size*sizeof(PetscInt),&procsnz);CHKERRQ(ierr);
2650b24ad042SBarry Smith     ierr = PetscMemzero(procsnz,size*sizeof(PetscInt));CHKERRQ(ierr);
2651dc231df0SBarry Smith     for (j=0; j<m; j++) {
2652dc231df0SBarry Smith       procsnz[0] += locrowlens[j];
2653dc231df0SBarry Smith     }
2654dc231df0SBarry Smith     for (i=1; i<size; i++) {
2655dc231df0SBarry Smith       mend = browners[i+1] - browners[i];
2656dc231df0SBarry Smith       if (i == size-1) mend = mend - extra_rows;
2657dc231df0SBarry Smith       ierr = PetscBinaryRead(fd,rowlengths,mend,PETSC_INT);CHKERRQ(ierr);
2658dc231df0SBarry Smith       for (j=mend; j<browners[i+1] - browners[i]; j++) rowlengths[j] = 1;
2659dc231df0SBarry Smith       /* calculate the number of nonzeros on each processor */
2660dc231df0SBarry Smith       for (j=0; j<browners[i+1]-browners[i]; j++) {
266157b952d6SSatish Balay         procsnz[i] += rowlengths[j];
266257b952d6SSatish Balay       }
2663dc231df0SBarry Smith       ierr = MPI_Send(rowlengths,browners[i+1]-browners[i],MPIU_INT,i,tag,comm);CHKERRQ(ierr);
266457b952d6SSatish Balay     }
2665606d414cSSatish Balay     ierr = PetscFree(rowlengths);CHKERRQ(ierr);
2666dc231df0SBarry Smith   } else {
2667dc231df0SBarry Smith     ierr = MPI_Recv(locrowlens,m,MPIU_INT,0,tag,comm,&status);CHKERRQ(ierr);
2668dc231df0SBarry Smith   }
266957b952d6SSatish Balay 
2670dc231df0SBarry Smith   if (!rank) {
267157b952d6SSatish Balay     /* determine max buffer needed and allocate it */
26728a8e0b3aSBarry Smith     maxnz = procsnz[0];
2673cdc0ba36SBarry Smith     for (i=1; i<size; i++) {
267457b952d6SSatish Balay       maxnz = PetscMax(maxnz,procsnz[i]);
267557b952d6SSatish Balay     }
2676b24ad042SBarry Smith     ierr = PetscMalloc(maxnz*sizeof(PetscInt),&cols);CHKERRQ(ierr);
267757b952d6SSatish Balay 
267857b952d6SSatish Balay     /* read in my part of the matrix column indices  */
267957b952d6SSatish Balay     nz     = procsnz[0];
268019c38ff2SBarry Smith     ierr   = PetscMalloc((nz+1)*sizeof(PetscInt),&ibuf);CHKERRQ(ierr);
268157b952d6SSatish Balay     mycols = ibuf;
2682cee3aa6bSSatish Balay     if (size == 1)  nz -= extra_rows;
2683e5638eb3SBarry Smith     ierr = PetscBinaryRead(fd,mycols,nz,PETSC_INT);CHKERRQ(ierr);
2684cee3aa6bSSatish Balay     if (size == 1)  for (i=0; i< extra_rows; i++) { mycols[nz+i] = M+i; }
2685cee3aa6bSSatish Balay 
268657b952d6SSatish Balay     /* read in every ones (except the last) and ship off */
268757b952d6SSatish Balay     for (i=1; i<size-1; i++) {
268857b952d6SSatish Balay       nz   = procsnz[i];
2689e5638eb3SBarry Smith       ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr);
2690b24ad042SBarry Smith       ierr = MPI_Send(cols,nz,MPIU_INT,i,tag,comm);CHKERRQ(ierr);
269157b952d6SSatish Balay     }
269257b952d6SSatish Balay     /* read in the stuff for the last proc */
269357b952d6SSatish Balay     if (size != 1) {
269457b952d6SSatish Balay       nz   = procsnz[size-1] - extra_rows;  /* the extra rows are not on the disk */
2695e5638eb3SBarry Smith       ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr);
269657b952d6SSatish Balay       for (i=0; i<extra_rows; i++) cols[nz+i] = M+i;
2697b24ad042SBarry Smith       ierr = MPI_Send(cols,nz+extra_rows,MPIU_INT,size-1,tag,comm);CHKERRQ(ierr);
269857b952d6SSatish Balay     }
2699606d414cSSatish Balay     ierr = PetscFree(cols);CHKERRQ(ierr);
2700d64ed03dSBarry Smith   } else {
270157b952d6SSatish Balay     /* determine buffer space needed for message */
270257b952d6SSatish Balay     nz = 0;
270357b952d6SSatish Balay     for (i=0; i<m; i++) {
270457b952d6SSatish Balay       nz += locrowlens[i];
270557b952d6SSatish Balay     }
270619c38ff2SBarry Smith     ierr   = PetscMalloc((nz+1)*sizeof(PetscInt),&ibuf);CHKERRQ(ierr);
270757b952d6SSatish Balay     mycols = ibuf;
270857b952d6SSatish Balay     /* receive message of column indices*/
2709b24ad042SBarry Smith     ierr = MPI_Recv(mycols,nz,MPIU_INT,0,tag,comm,&status);CHKERRQ(ierr);
2710b24ad042SBarry Smith     ierr = MPI_Get_count(&status,MPIU_INT,&maxnz);CHKERRQ(ierr);
271129bbc08cSBarry Smith     if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file");
271257b952d6SSatish Balay   }
271357b952d6SSatish Balay 
271457b952d6SSatish Balay   /* loop over local rows, determining number of off diagonal entries */
2715dc231df0SBarry Smith   ierr     = PetscMalloc2(rend-rstart,PetscInt,&dlens,rend-rstart,PetscInt,&odlens);CHKERRQ(ierr);
2716dc231df0SBarry Smith   ierr     = PetscMalloc3(Mbs,PetscInt,&mask,Mbs,PetscInt,&masked1,Mbs,PetscInt,&masked2);CHKERRQ(ierr);
2717dc231df0SBarry Smith   ierr     = PetscMemzero(mask,Mbs*sizeof(PetscInt));CHKERRQ(ierr);
2718dc231df0SBarry Smith   ierr     = PetscMemzero(masked1,Mbs*sizeof(PetscInt));CHKERRQ(ierr);
2719dc231df0SBarry Smith   ierr     = PetscMemzero(masked2,Mbs*sizeof(PetscInt));CHKERRQ(ierr);
272057b952d6SSatish Balay   rowcount = 0; nzcount = 0;
272157b952d6SSatish Balay   for (i=0; i<mbs; i++) {
272257b952d6SSatish Balay     dcount  = 0;
272357b952d6SSatish Balay     odcount = 0;
272457b952d6SSatish Balay     for (j=0; j<bs; j++) {
272557b952d6SSatish Balay       kmax = locrowlens[rowcount];
272657b952d6SSatish Balay       for (k=0; k<kmax; k++) {
272757b952d6SSatish Balay         tmp = mycols[nzcount++]/bs;
272857b952d6SSatish Balay         if (!mask[tmp]) {
272957b952d6SSatish Balay           mask[tmp] = 1;
273057b952d6SSatish Balay           if (tmp < rstart || tmp >= rend) masked2[odcount++] = tmp;
273157b952d6SSatish Balay           else masked1[dcount++] = tmp;
273257b952d6SSatish Balay         }
273357b952d6SSatish Balay       }
273457b952d6SSatish Balay       rowcount++;
273557b952d6SSatish Balay     }
2736cee3aa6bSSatish Balay 
273757b952d6SSatish Balay     dlens[i]  = dcount;
273857b952d6SSatish Balay     odlens[i] = odcount;
2739cee3aa6bSSatish Balay 
274057b952d6SSatish Balay     /* zero out the mask elements we set */
274157b952d6SSatish Balay     for (j=0; j<dcount; j++) mask[masked1[j]] = 0;
274257b952d6SSatish Balay     for (j=0; j<odcount; j++) mask[masked2[j]] = 0;
274357b952d6SSatish Balay   }
2744cee3aa6bSSatish Balay 
274557b952d6SSatish Balay   /* create our matrix */
2746f69a0ea3SMatthew Knepley   ierr = MatCreate(comm,&A);CHKERRQ(ierr);
2747f69a0ea3SMatthew Knepley   ierr = MatSetSizes(A,m,m,M+extra_rows,N+extra_rows);CHKERRQ(ierr);
274878ae41b4SKris Buschelman   ierr = MatSetType(A,type);CHKERRQ(ierr)
274978ae41b4SKris Buschelman   ierr = MatMPIBAIJSetPreallocation(A,bs,0,dlens,0,odlens);CHKERRQ(ierr);
275078ae41b4SKris Buschelman 
275157b952d6SSatish Balay   if (!rank) {
275219c38ff2SBarry Smith     ierr = PetscMalloc((maxnz+1)*sizeof(PetscScalar),&buf);CHKERRQ(ierr);
275357b952d6SSatish Balay     /* read in my part of the matrix numerical values  */
275457b952d6SSatish Balay     nz = procsnz[0];
275557b952d6SSatish Balay     vals = buf;
2756cee3aa6bSSatish Balay     mycols = ibuf;
2757cee3aa6bSSatish Balay     if (size == 1)  nz -= extra_rows;
2758e5638eb3SBarry Smith     ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
2759cee3aa6bSSatish Balay     if (size == 1)  for (i=0; i< extra_rows; i++) { vals[nz+i] = 1.0; }
2760537820f0SBarry Smith 
276157b952d6SSatish Balay     /* insert into matrix */
276257b952d6SSatish Balay     jj      = rstart*bs;
276357b952d6SSatish Balay     for (i=0; i<m; i++) {
2764dc231df0SBarry Smith       ierr = MatSetValues_MPIBAIJ(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr);
276557b952d6SSatish Balay       mycols += locrowlens[i];
276657b952d6SSatish Balay       vals   += locrowlens[i];
276757b952d6SSatish Balay       jj++;
276857b952d6SSatish Balay     }
276957b952d6SSatish Balay     /* read in other processors (except the last one) and ship out */
277057b952d6SSatish Balay     for (i=1; i<size-1; i++) {
277157b952d6SSatish Balay       nz   = procsnz[i];
277257b952d6SSatish Balay       vals = buf;
2773e5638eb3SBarry Smith       ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
27747adad957SLisandro Dalcin       ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,((PetscObject)A)->tag,comm);CHKERRQ(ierr);
277557b952d6SSatish Balay     }
277657b952d6SSatish Balay     /* the last proc */
277757b952d6SSatish Balay     if (size != 1){
277857b952d6SSatish Balay       nz   = procsnz[i] - extra_rows;
2779cee3aa6bSSatish Balay       vals = buf;
2780e5638eb3SBarry Smith       ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
278157b952d6SSatish Balay       for (i=0; i<extra_rows; i++) vals[nz+i] = 1.0;
27827adad957SLisandro Dalcin       ierr = MPI_Send(vals,nz+extra_rows,MPIU_SCALAR,size-1,((PetscObject)A)->tag,comm);CHKERRQ(ierr);
278357b952d6SSatish Balay     }
2784606d414cSSatish Balay     ierr = PetscFree(procsnz);CHKERRQ(ierr);
2785d64ed03dSBarry Smith   } else {
278657b952d6SSatish Balay     /* receive numeric values */
278719c38ff2SBarry Smith     ierr = PetscMalloc((nz+1)*sizeof(PetscScalar),&buf);CHKERRQ(ierr);
278857b952d6SSatish Balay 
278957b952d6SSatish Balay     /* receive message of values*/
279057b952d6SSatish Balay     vals   = buf;
2791cee3aa6bSSatish Balay     mycols = ibuf;
27927adad957SLisandro Dalcin     ierr   = MPI_Recv(vals,nz,MPIU_SCALAR,0,((PetscObject)A)->tag,comm,&status);CHKERRQ(ierr);
2793ca161407SBarry Smith     ierr   = MPI_Get_count(&status,MPIU_SCALAR,&maxnz);CHKERRQ(ierr);
279429bbc08cSBarry Smith     if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file");
279557b952d6SSatish Balay 
279657b952d6SSatish Balay     /* insert into matrix */
279757b952d6SSatish Balay     jj      = rstart*bs;
2798cee3aa6bSSatish Balay     for (i=0; i<m; i++) {
2799dc231df0SBarry Smith       ierr    = MatSetValues_MPIBAIJ(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr);
280057b952d6SSatish Balay       mycols += locrowlens[i];
280157b952d6SSatish Balay       vals   += locrowlens[i];
280257b952d6SSatish Balay       jj++;
280357b952d6SSatish Balay     }
280457b952d6SSatish Balay   }
2805606d414cSSatish Balay   ierr = PetscFree(locrowlens);CHKERRQ(ierr);
2806606d414cSSatish Balay   ierr = PetscFree(buf);CHKERRQ(ierr);
2807606d414cSSatish Balay   ierr = PetscFree(ibuf);CHKERRQ(ierr);
2808dc231df0SBarry Smith   ierr = PetscFree2(rowners,browners);CHKERRQ(ierr);
2809dc231df0SBarry Smith   ierr = PetscFree2(dlens,odlens);CHKERRQ(ierr);
2810dc231df0SBarry Smith   ierr = PetscFree3(mask,masked1,masked2);CHKERRQ(ierr);
28116d4a8577SBarry Smith   ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
28126d4a8577SBarry Smith   ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
281378ae41b4SKris Buschelman 
281478ae41b4SKris Buschelman   *newmat = A;
28153a40ed3dSBarry Smith   PetscFunctionReturn(0);
281657b952d6SSatish Balay }
281757b952d6SSatish Balay 
28184a2ae208SSatish Balay #undef __FUNCT__
28194a2ae208SSatish Balay #define __FUNCT__ "MatMPIBAIJSetHashTableFactor"
2820133cdb44SSatish Balay /*@
2821133cdb44SSatish Balay    MatMPIBAIJSetHashTableFactor - Sets the factor required to compute the size of the HashTable.
2822133cdb44SSatish Balay 
2823133cdb44SSatish Balay    Input Parameters:
2824133cdb44SSatish Balay .  mat  - the matrix
2825133cdb44SSatish Balay .  fact - factor
2826133cdb44SSatish Balay 
2827fee21e36SBarry Smith    Collective on Mat
2828fee21e36SBarry Smith 
28298c890885SBarry Smith    Level: advanced
28308c890885SBarry Smith 
2831133cdb44SSatish Balay   Notes:
28328c07d4e3SBarry Smith    This can also be set by the command line option: -mat_use_hash_table <fact>
2833133cdb44SSatish Balay 
2834133cdb44SSatish Balay .keywords: matrix, hashtable, factor, HT
2835133cdb44SSatish Balay 
2836133cdb44SSatish Balay .seealso: MatSetOption()
2837133cdb44SSatish Balay @*/
2838be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPIBAIJSetHashTableFactor(Mat mat,PetscReal fact)
2839133cdb44SSatish Balay {
2840dfbe8321SBarry Smith   PetscErrorCode ierr,(*f)(Mat,PetscReal);
28415bf65638SKris Buschelman 
28425bf65638SKris Buschelman   PetscFunctionBegin;
28435bf65638SKris Buschelman   ierr = PetscObjectQueryFunction((PetscObject)mat,"MatSetHashTableFactor_C",(void (**)(void))&f);CHKERRQ(ierr);
28445bf65638SKris Buschelman   if (f) {
28455bf65638SKris Buschelman     ierr = (*f)(mat,fact);CHKERRQ(ierr);
28465bf65638SKris Buschelman   }
28475bf65638SKris Buschelman   PetscFunctionReturn(0);
28485bf65638SKris Buschelman }
28495bf65638SKris Buschelman 
2850be1d678aSKris Buschelman EXTERN_C_BEGIN
28515bf65638SKris Buschelman #undef __FUNCT__
28525bf65638SKris Buschelman #define __FUNCT__ "MatSetHashTableFactor_MPIBAIJ"
2853be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatSetHashTableFactor_MPIBAIJ(Mat mat,PetscReal fact)
28545bf65638SKris Buschelman {
285525fdafccSSatish Balay   Mat_MPIBAIJ *baij;
2856133cdb44SSatish Balay 
2857133cdb44SSatish Balay   PetscFunctionBegin;
2858133cdb44SSatish Balay   baij = (Mat_MPIBAIJ*)mat->data;
2859133cdb44SSatish Balay   baij->ht_fact = fact;
2860133cdb44SSatish Balay   PetscFunctionReturn(0);
2861133cdb44SSatish Balay }
2862be1d678aSKris Buschelman EXTERN_C_END
2863f2a5309cSSatish Balay 
28644a2ae208SSatish Balay #undef __FUNCT__
28654a2ae208SSatish Balay #define __FUNCT__ "MatMPIBAIJGetSeqBAIJ"
2866be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPIBAIJGetSeqBAIJ(Mat A,Mat *Ad,Mat *Ao,PetscInt *colmap[])
2867f2a5309cSSatish Balay {
2868f2a5309cSSatish Balay   Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data;
2869f2a5309cSSatish Balay   PetscFunctionBegin;
2870f2a5309cSSatish Balay   *Ad     = a->A;
2871f2a5309cSSatish Balay   *Ao     = a->B;
2872195d93cdSBarry Smith   *colmap = a->garray;
2873f2a5309cSSatish Balay   PetscFunctionReturn(0);
2874f2a5309cSSatish Balay }
287585535b8eSBarry Smith 
287685535b8eSBarry Smith /*
287785535b8eSBarry Smith     Special version for direct calls from Fortran (to eliminate two function call overheads
287885535b8eSBarry Smith */
287985535b8eSBarry Smith #if defined(PETSC_HAVE_FORTRAN_CAPS)
288085535b8eSBarry Smith #define matmpibaijsetvaluesblocked_ MATMPIBAIJSETVALUESBLOCKED
288185535b8eSBarry Smith #elif !defined(PETSC_HAVE_FORTRAN_UNDERSCORE)
288285535b8eSBarry Smith #define matmpibaijsetvaluesblocked_ matmpibaijsetvaluesblocked
288385535b8eSBarry Smith #endif
288485535b8eSBarry Smith 
288585535b8eSBarry Smith #undef __FUNCT__
288685535b8eSBarry Smith #define __FUNCT__ "matmpibiajsetvaluesblocked"
288785535b8eSBarry Smith /*@C
288885535b8eSBarry Smith   MatMPIBAIJSetValuesBlocked - Direct Fortran call to replace call to MatSetValuesBlocked()
288985535b8eSBarry Smith 
289085535b8eSBarry Smith   Collective on Mat
289185535b8eSBarry Smith 
289285535b8eSBarry Smith   Input Parameters:
289385535b8eSBarry Smith + mat - the matrix
289485535b8eSBarry Smith . min - number of input rows
289585535b8eSBarry Smith . im - input rows
289685535b8eSBarry Smith . nin - number of input columns
289785535b8eSBarry Smith . in - input columns
289885535b8eSBarry Smith . v - numerical values input
289985535b8eSBarry Smith - addvin - INSERT_VALUES or ADD_VALUES
290085535b8eSBarry Smith 
290185535b8eSBarry Smith   Notes: This has a complete copy of MatSetValuesBlocked_MPIBAIJ() which is terrible code un-reuse.
290285535b8eSBarry Smith 
290385535b8eSBarry Smith   Level: advanced
290485535b8eSBarry Smith 
290585535b8eSBarry Smith .seealso:   MatSetValuesBlocked()
290685535b8eSBarry Smith @*/
290785535b8eSBarry Smith PetscErrorCode matmpibaijsetvaluesblocked_(Mat *matin,PetscInt *min,const PetscInt im[],PetscInt *nin,const PetscInt in[],const MatScalar v[],InsertMode *addvin)
290885535b8eSBarry Smith {
290985535b8eSBarry Smith   /* convert input arguments to C version */
291085535b8eSBarry Smith   Mat             mat = *matin;
291185535b8eSBarry Smith   PetscInt        m = *min, n = *nin;
291285535b8eSBarry Smith   InsertMode      addv = *addvin;
291385535b8eSBarry Smith 
291485535b8eSBarry Smith   Mat_MPIBAIJ     *baij = (Mat_MPIBAIJ*)mat->data;
291585535b8eSBarry Smith   const MatScalar *value;
291685535b8eSBarry Smith   MatScalar       *barray=baij->barray;
291785535b8eSBarry Smith   PetscTruth      roworiented = baij->roworiented;
291885535b8eSBarry Smith   PetscErrorCode  ierr;
291985535b8eSBarry Smith   PetscInt        i,j,ii,jj,row,col,rstart=baij->rstartbs;
292085535b8eSBarry Smith   PetscInt        rend=baij->rendbs,cstart=baij->cstartbs,stepval;
2921d0f46423SBarry Smith   PetscInt        cend=baij->cendbs,bs=mat->rmap->bs,bs2=baij->bs2;
292285535b8eSBarry Smith 
292385535b8eSBarry Smith   PetscFunctionBegin;
292485535b8eSBarry Smith   /* tasks normally handled by MatSetValuesBlocked() */
292585535b8eSBarry Smith   if (mat->insertmode == NOT_SET_VALUES) {
292685535b8eSBarry Smith     mat->insertmode = addv;
292785535b8eSBarry Smith   }
292885535b8eSBarry Smith #if defined(PETSC_USE_DEBUG)
292985535b8eSBarry Smith   else if (mat->insertmode != addv) {
293085535b8eSBarry Smith     SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Cannot mix add values and insert values");
293185535b8eSBarry Smith   }
293285535b8eSBarry Smith   if (mat->factor) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Not for factored matrix");
293385535b8eSBarry Smith #endif
293485535b8eSBarry Smith   if (mat->assembled) {
293585535b8eSBarry Smith     mat->was_assembled = PETSC_TRUE;
293685535b8eSBarry Smith     mat->assembled     = PETSC_FALSE;
293785535b8eSBarry Smith   }
293885535b8eSBarry Smith   ierr = PetscLogEventBegin(MAT_SetValues,mat,0,0,0);CHKERRQ(ierr);
293985535b8eSBarry Smith 
294085535b8eSBarry Smith 
294185535b8eSBarry Smith   if(!barray) {
294285535b8eSBarry Smith     ierr         = PetscMalloc(bs2*sizeof(MatScalar),&barray);CHKERRQ(ierr);
294385535b8eSBarry Smith     baij->barray = barray;
294485535b8eSBarry Smith   }
294585535b8eSBarry Smith 
294685535b8eSBarry Smith   if (roworiented) {
294785535b8eSBarry Smith     stepval = (n-1)*bs;
294885535b8eSBarry Smith   } else {
294985535b8eSBarry Smith     stepval = (m-1)*bs;
295085535b8eSBarry Smith   }
295185535b8eSBarry Smith   for (i=0; i<m; i++) {
295285535b8eSBarry Smith     if (im[i] < 0) continue;
295385535b8eSBarry Smith #if defined(PETSC_USE_DEBUG)
295485535b8eSBarry Smith     if (im[i] >= baij->Mbs) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large, row %D max %D",im[i],baij->Mbs-1);
295585535b8eSBarry Smith #endif
295685535b8eSBarry Smith     if (im[i] >= rstart && im[i] < rend) {
295785535b8eSBarry Smith       row = im[i] - rstart;
295885535b8eSBarry Smith       for (j=0; j<n; j++) {
295985535b8eSBarry Smith         /* If NumCol = 1 then a copy is not required */
296085535b8eSBarry Smith         if ((roworiented) && (n == 1)) {
296185535b8eSBarry Smith           barray = (MatScalar*)v + i*bs2;
296285535b8eSBarry Smith         } else if((!roworiented) && (m == 1)) {
296385535b8eSBarry Smith           barray = (MatScalar*)v + j*bs2;
296485535b8eSBarry Smith         } else { /* Here a copy is required */
296585535b8eSBarry Smith           if (roworiented) {
296685535b8eSBarry Smith             value = v + i*(stepval+bs)*bs + j*bs;
296785535b8eSBarry Smith           } else {
296885535b8eSBarry Smith             value = v + j*(stepval+bs)*bs + i*bs;
296985535b8eSBarry Smith           }
297085535b8eSBarry Smith           for (ii=0; ii<bs; ii++,value+=stepval) {
297185535b8eSBarry Smith             for (jj=0; jj<bs; jj++) {
297285535b8eSBarry Smith               *barray++  = *value++;
297385535b8eSBarry Smith             }
297485535b8eSBarry Smith           }
297585535b8eSBarry Smith           barray -=bs2;
297685535b8eSBarry Smith         }
297785535b8eSBarry Smith 
297885535b8eSBarry Smith         if (in[j] >= cstart && in[j] < cend){
297985535b8eSBarry Smith           col  = in[j] - cstart;
298097e5c40aSBarry Smith           ierr = MatSetValuesBlocked_SeqBAIJ(baij->A,1,&row,1,&col,barray,addv);CHKERRQ(ierr);
298185535b8eSBarry Smith         }
298285535b8eSBarry Smith         else if (in[j] < 0) continue;
298385535b8eSBarry Smith #if defined(PETSC_USE_DEBUG)
298485535b8eSBarry Smith         else if (in[j] >= baij->Nbs) {SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large, col %D max %D",in[j],baij->Nbs-1);}
298585535b8eSBarry Smith #endif
298685535b8eSBarry Smith         else {
298785535b8eSBarry Smith           if (mat->was_assembled) {
298885535b8eSBarry Smith             if (!baij->colmap) {
298985535b8eSBarry Smith               ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
299085535b8eSBarry Smith             }
299185535b8eSBarry Smith 
299285535b8eSBarry Smith #if defined(PETSC_USE_DEBUG)
299385535b8eSBarry Smith #if defined (PETSC_USE_CTABLE)
299485535b8eSBarry Smith             { PetscInt data;
299585535b8eSBarry Smith               ierr = PetscTableFind(baij->colmap,in[j]+1,&data);CHKERRQ(ierr);
299685535b8eSBarry Smith               if ((data - 1) % bs) SETERRQ(PETSC_ERR_PLIB,"Incorrect colmap");
299785535b8eSBarry Smith             }
299885535b8eSBarry Smith #else
299985535b8eSBarry Smith             if ((baij->colmap[in[j]] - 1) % bs) SETERRQ(PETSC_ERR_PLIB,"Incorrect colmap");
300085535b8eSBarry Smith #endif
300185535b8eSBarry Smith #endif
300285535b8eSBarry Smith #if defined (PETSC_USE_CTABLE)
300385535b8eSBarry Smith 	    ierr = PetscTableFind(baij->colmap,in[j]+1,&col);CHKERRQ(ierr);
300485535b8eSBarry Smith             col  = (col - 1)/bs;
300585535b8eSBarry Smith #else
300685535b8eSBarry Smith             col = (baij->colmap[in[j]] - 1)/bs;
300785535b8eSBarry Smith #endif
300885535b8eSBarry Smith             if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) {
300985535b8eSBarry Smith               ierr = DisAssemble_MPIBAIJ(mat);CHKERRQ(ierr);
301085535b8eSBarry Smith               col =  in[j];
301185535b8eSBarry Smith             }
301285535b8eSBarry Smith           }
301385535b8eSBarry Smith           else col = in[j];
301497e5c40aSBarry Smith           ierr = MatSetValuesBlocked_SeqBAIJ(baij->B,1,&row,1,&col,barray,addv);CHKERRQ(ierr);
301585535b8eSBarry Smith         }
301685535b8eSBarry Smith       }
301785535b8eSBarry Smith     } else {
301885535b8eSBarry Smith       if (!baij->donotstash) {
301985535b8eSBarry Smith         if (roworiented) {
302085535b8eSBarry Smith           ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
302185535b8eSBarry Smith         } else {
302285535b8eSBarry Smith           ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
302385535b8eSBarry Smith         }
302485535b8eSBarry Smith       }
302585535b8eSBarry Smith     }
302685535b8eSBarry Smith   }
302785535b8eSBarry Smith 
302885535b8eSBarry Smith   /* task normally handled by MatSetValuesBlocked() */
302985535b8eSBarry Smith   ierr = PetscLogEventEnd(MAT_SetValues,mat,0,0,0);CHKERRQ(ierr);
303085535b8eSBarry Smith   PetscFunctionReturn(0);
303185535b8eSBarry Smith }
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