179bdfe76SSatish Balay 2c6db04a5SJed Brown #include <../src/mat/impls/baij/mpi/mpibaij.h> /*I "petscmat.h" I*/ 3c5d9258eSSatish Balay 4c6db04a5SJed Brown #include <petscblaslapack.h> 565a92638SMatthew G. Knepley #include <petscsf.h> 679bdfe76SSatish Balay 77ea3e4caSstefano_zampini #if defined(PETSC_HAVE_HYPRE) 87ea3e4caSstefano_zampini PETSC_INTERN PetscErrorCode MatConvert_AIJ_HYPRE(Mat,MatType,MatReuse,Mat*); 97ea3e4caSstefano_zampini #endif 107ea3e4caSstefano_zampini 11985db425SBarry Smith PetscErrorCode MatGetRowMaxAbs_MPIBAIJ(Mat A,Vec v,PetscInt idx[]) 127843d17aSBarry Smith { 137843d17aSBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 14dfbe8321SBarry Smith PetscErrorCode ierr; 15985db425SBarry Smith PetscInt i,*idxb = 0; 1687828ca2SBarry Smith PetscScalar *va,*vb; 177843d17aSBarry Smith Vec vtmp; 187843d17aSBarry Smith 197843d17aSBarry Smith PetscFunctionBegin; 20985db425SBarry Smith ierr = MatGetRowMaxAbs(a->A,v,idx);CHKERRQ(ierr); 211ebc52fbSHong Zhang ierr = VecGetArray(v,&va);CHKERRQ(ierr); 22985db425SBarry Smith if (idx) { 2326fbe8dcSKarl Rupp for (i=0; i<A->rmap->n; i++) { 2426fbe8dcSKarl Rupp if (PetscAbsScalar(va[i])) idx[i] += A->cmap->rstart; 2526fbe8dcSKarl Rupp } 26985db425SBarry Smith } 277843d17aSBarry Smith 28d0f46423SBarry Smith ierr = VecCreateSeq(PETSC_COMM_SELF,A->rmap->n,&vtmp);CHKERRQ(ierr); 29785e854fSJed Brown if (idx) {ierr = PetscMalloc1(A->rmap->n,&idxb);CHKERRQ(ierr);} 30985db425SBarry Smith ierr = MatGetRowMaxAbs(a->B,vtmp,idxb);CHKERRQ(ierr); 311ebc52fbSHong Zhang ierr = VecGetArray(vtmp,&vb);CHKERRQ(ierr); 327843d17aSBarry Smith 33d0f46423SBarry Smith for (i=0; i<A->rmap->n; i++) { 3426fbe8dcSKarl Rupp if (PetscAbsScalar(va[i]) < PetscAbsScalar(vb[i])) { 3526fbe8dcSKarl Rupp va[i] = vb[i]; 3626fbe8dcSKarl Rupp if (idx) idx[i] = A->cmap->bs*a->garray[idxb[i]/A->cmap->bs] + (idxb[i] % A->cmap->bs); 3726fbe8dcSKarl Rupp } 387843d17aSBarry Smith } 397843d17aSBarry Smith 401ebc52fbSHong Zhang ierr = VecRestoreArray(v,&va);CHKERRQ(ierr); 411ebc52fbSHong Zhang ierr = VecRestoreArray(vtmp,&vb);CHKERRQ(ierr); 42c31cb41cSBarry Smith ierr = PetscFree(idxb);CHKERRQ(ierr); 436bf464f9SBarry Smith ierr = VecDestroy(&vtmp);CHKERRQ(ierr); 447843d17aSBarry Smith PetscFunctionReturn(0); 457843d17aSBarry Smith } 467843d17aSBarry Smith 477087cfbeSBarry Smith PetscErrorCode MatStoreValues_MPIBAIJ(Mat mat) 487fc3c18eSBarry Smith { 497fc3c18eSBarry Smith Mat_MPIBAIJ *aij = (Mat_MPIBAIJ*)mat->data; 50dfbe8321SBarry Smith PetscErrorCode ierr; 517fc3c18eSBarry Smith 527fc3c18eSBarry Smith PetscFunctionBegin; 537fc3c18eSBarry Smith ierr = MatStoreValues(aij->A);CHKERRQ(ierr); 547fc3c18eSBarry Smith ierr = MatStoreValues(aij->B);CHKERRQ(ierr); 557fc3c18eSBarry Smith PetscFunctionReturn(0); 567fc3c18eSBarry Smith } 577fc3c18eSBarry Smith 587087cfbeSBarry Smith PetscErrorCode MatRetrieveValues_MPIBAIJ(Mat mat) 597fc3c18eSBarry Smith { 607fc3c18eSBarry Smith Mat_MPIBAIJ *aij = (Mat_MPIBAIJ*)mat->data; 61dfbe8321SBarry Smith PetscErrorCode ierr; 627fc3c18eSBarry Smith 637fc3c18eSBarry Smith PetscFunctionBegin; 647fc3c18eSBarry Smith ierr = MatRetrieveValues(aij->A);CHKERRQ(ierr); 657fc3c18eSBarry Smith ierr = MatRetrieveValues(aij->B);CHKERRQ(ierr); 667fc3c18eSBarry Smith PetscFunctionReturn(0); 677fc3c18eSBarry Smith } 687fc3c18eSBarry Smith 69537820f0SBarry Smith /* 70537820f0SBarry Smith Local utility routine that creates a mapping from the global column 7157b952d6SSatish Balay number to the local number in the off-diagonal part of the local 72e06f6af7SJed Brown storage of the matrix. This is done in a non scalable way since the 7357b952d6SSatish Balay length of colmap equals the global matrix length. 7457b952d6SSatish Balay */ 75ab9863d7SBarry Smith PetscErrorCode MatCreateColmap_MPIBAIJ_Private(Mat mat) 7657b952d6SSatish Balay { 7757b952d6SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 7857b952d6SSatish Balay Mat_SeqBAIJ *B = (Mat_SeqBAIJ*)baij->B->data; 796849ba73SBarry Smith PetscErrorCode ierr; 80d0f46423SBarry Smith PetscInt nbs = B->nbs,i,bs=mat->rmap->bs; 8157b952d6SSatish Balay 82d64ed03dSBarry Smith PetscFunctionBegin; 83aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 84e23dfa41SBarry Smith ierr = PetscTableCreate(baij->nbs,baij->Nbs+1,&baij->colmap);CHKERRQ(ierr); 8548e59246SSatish Balay for (i=0; i<nbs; i++) { 863861aac3SJed Brown ierr = PetscTableAdd(baij->colmap,baij->garray[i]+1,i*bs+1,INSERT_VALUES);CHKERRQ(ierr); 8748e59246SSatish Balay } 8848e59246SSatish Balay #else 89854ce69bSBarry Smith ierr = PetscMalloc1(baij->Nbs+1,&baij->colmap);CHKERRQ(ierr); 903bb1ff40SBarry Smith ierr = PetscLogObjectMemory((PetscObject)mat,baij->Nbs*sizeof(PetscInt));CHKERRQ(ierr); 91b24ad042SBarry Smith ierr = PetscMemzero(baij->colmap,baij->Nbs*sizeof(PetscInt));CHKERRQ(ierr); 92928fc39bSSatish Balay for (i=0; i<nbs; i++) baij->colmap[baij->garray[i]] = i*bs+1; 9348e59246SSatish Balay #endif 943a40ed3dSBarry Smith PetscFunctionReturn(0); 9557b952d6SSatish Balay } 9657b952d6SSatish Balay 97d40312a9SBarry Smith #define MatSetValues_SeqBAIJ_A_Private(row,col,value,addv,orow,ocol) \ 9880c1aa95SSatish Balay { \ 9980c1aa95SSatish Balay \ 10080c1aa95SSatish Balay brow = row/bs; \ 10180c1aa95SSatish Balay rp = aj + ai[brow]; ap = aa + bs2*ai[brow]; \ 102ac7a638eSSatish Balay rmax = aimax[brow]; nrow = ailen[brow]; \ 10380c1aa95SSatish Balay bcol = col/bs; \ 10480c1aa95SSatish Balay ridx = row % bs; cidx = col % bs; \ 105ab26458aSBarry Smith low = 0; high = nrow; \ 106ab26458aSBarry Smith while (high-low > 3) { \ 107ab26458aSBarry Smith t = (low+high)/2; \ 108ab26458aSBarry Smith if (rp[t] > bcol) high = t; \ 109ab26458aSBarry Smith else low = t; \ 110ab26458aSBarry Smith } \ 111ab26458aSBarry Smith for (_i=low; _i<high; _i++) { \ 11280c1aa95SSatish Balay if (rp[_i] > bcol) break; \ 11380c1aa95SSatish Balay if (rp[_i] == bcol) { \ 11480c1aa95SSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 115eada6651SSatish Balay if (addv == ADD_VALUES) *bap += value; \ 116eada6651SSatish Balay else *bap = value; \ 117ac7a638eSSatish Balay goto a_noinsert; \ 11880c1aa95SSatish Balay } \ 11980c1aa95SSatish Balay } \ 12089280ab3SLois Curfman McInnes if (a->nonew == 1) goto a_noinsert; \ 121d40312a9SBarry Smith if (a->nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero at global row/column (%D, %D) into matrix", orow, ocol); \ 122fef13f97SBarry Smith MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,brow,bcol,rmax,aa,ai,aj,rp,ap,aimax,a->nonew,MatScalar); \ 12380c1aa95SSatish Balay N = nrow++ - 1; \ 12480c1aa95SSatish Balay /* shift up all the later entries in this row */ \ 12580c1aa95SSatish Balay for (ii=N; ii>=_i; ii--) { \ 12680c1aa95SSatish Balay rp[ii+1] = rp[ii]; \ 1273eda8832SBarry Smith ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 12880c1aa95SSatish Balay } \ 1293eda8832SBarry Smith if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr); } \ 13080c1aa95SSatish Balay rp[_i] = bcol; \ 13180c1aa95SSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 132ac7a638eSSatish Balay a_noinsert:; \ 13380c1aa95SSatish Balay ailen[brow] = nrow; \ 13480c1aa95SSatish Balay } 13557b952d6SSatish Balay 136d40312a9SBarry Smith #define MatSetValues_SeqBAIJ_B_Private(row,col,value,addv,orow,ocol) \ 137ac7a638eSSatish Balay { \ 138ac7a638eSSatish Balay brow = row/bs; \ 139ac7a638eSSatish Balay rp = bj + bi[brow]; ap = ba + bs2*bi[brow]; \ 140ac7a638eSSatish Balay rmax = bimax[brow]; nrow = bilen[brow]; \ 141ac7a638eSSatish Balay bcol = col/bs; \ 142ac7a638eSSatish Balay ridx = row % bs; cidx = col % bs; \ 143ac7a638eSSatish Balay low = 0; high = nrow; \ 144ac7a638eSSatish Balay while (high-low > 3) { \ 145ac7a638eSSatish Balay t = (low+high)/2; \ 146ac7a638eSSatish Balay if (rp[t] > bcol) high = t; \ 147ac7a638eSSatish Balay else low = t; \ 148ac7a638eSSatish Balay } \ 149ac7a638eSSatish Balay for (_i=low; _i<high; _i++) { \ 150ac7a638eSSatish Balay if (rp[_i] > bcol) break; \ 151ac7a638eSSatish Balay if (rp[_i] == bcol) { \ 152ac7a638eSSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 153ac7a638eSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 154ac7a638eSSatish Balay else *bap = value; \ 155ac7a638eSSatish Balay goto b_noinsert; \ 156ac7a638eSSatish Balay } \ 157ac7a638eSSatish Balay } \ 15889280ab3SLois Curfman McInnes if (b->nonew == 1) goto b_noinsert; \ 159d40312a9SBarry Smith if (b->nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero at global row/column (%D, %D) into matrix", orow, ocol); \ 160fef13f97SBarry Smith MatSeqXAIJReallocateAIJ(B,b->mbs,bs2,nrow,brow,bcol,rmax,ba,bi,bj,rp,ap,bimax,b->nonew,MatScalar); \ 161ac7a638eSSatish Balay N = nrow++ - 1; \ 162ac7a638eSSatish Balay /* shift up all the later entries in this row */ \ 163ac7a638eSSatish Balay for (ii=N; ii>=_i; ii--) { \ 164ac7a638eSSatish Balay rp[ii+1] = rp[ii]; \ 1653eda8832SBarry Smith ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 166ac7a638eSSatish Balay } \ 1673eda8832SBarry Smith if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr);} \ 168ac7a638eSSatish Balay rp[_i] = bcol; \ 169ac7a638eSSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 170ac7a638eSSatish Balay b_noinsert:; \ 171ac7a638eSSatish Balay bilen[brow] = nrow; \ 172ac7a638eSSatish Balay } 173ac7a638eSSatish Balay 174b24ad042SBarry Smith PetscErrorCode MatSetValues_MPIBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv) 17557b952d6SSatish Balay { 17657b952d6SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 17793fea6afSBarry Smith MatScalar value; 178ace3abfcSBarry Smith PetscBool roworiented = baij->roworiented; 179dfbe8321SBarry Smith PetscErrorCode ierr; 180b24ad042SBarry Smith PetscInt i,j,row,col; 181d0f46423SBarry Smith PetscInt rstart_orig=mat->rmap->rstart; 182d0f46423SBarry Smith PetscInt rend_orig =mat->rmap->rend,cstart_orig=mat->cmap->rstart; 183d0f46423SBarry Smith PetscInt cend_orig =mat->cmap->rend,bs=mat->rmap->bs; 18457b952d6SSatish Balay 185eada6651SSatish Balay /* Some Variables required in the macro */ 18680c1aa95SSatish Balay Mat A = baij->A; 18780c1aa95SSatish Balay Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)(A)->data; 188b24ad042SBarry Smith PetscInt *aimax=a->imax,*ai=a->i,*ailen=a->ilen,*aj=a->j; 1893eda8832SBarry Smith MatScalar *aa =a->a; 190ac7a638eSSatish Balay 191ac7a638eSSatish Balay Mat B = baij->B; 192ac7a638eSSatish Balay Mat_SeqBAIJ *b = (Mat_SeqBAIJ*)(B)->data; 193b24ad042SBarry Smith PetscInt *bimax=b->imax,*bi=b->i,*bilen=b->ilen,*bj=b->j; 1943eda8832SBarry Smith MatScalar *ba =b->a; 195ac7a638eSSatish Balay 196b24ad042SBarry Smith PetscInt *rp,ii,nrow,_i,rmax,N,brow,bcol; 197b24ad042SBarry Smith PetscInt low,high,t,ridx,cidx,bs2=a->bs2; 1983eda8832SBarry Smith MatScalar *ap,*bap; 19980c1aa95SSatish Balay 200d64ed03dSBarry Smith PetscFunctionBegin; 20157b952d6SSatish Balay for (i=0; i<m; i++) { 2025ef9f2a5SBarry Smith if (im[i] < 0) continue; 2032515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 204e32f2f54SBarry Smith if (im[i] >= mat->rmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],mat->rmap->N-1); 205639f9d9dSBarry Smith #endif 20657b952d6SSatish Balay if (im[i] >= rstart_orig && im[i] < rend_orig) { 20757b952d6SSatish Balay row = im[i] - rstart_orig; 20857b952d6SSatish Balay for (j=0; j<n; j++) { 20957b952d6SSatish Balay if (in[j] >= cstart_orig && in[j] < cend_orig) { 21057b952d6SSatish Balay col = in[j] - cstart_orig; 211db4deed7SKarl Rupp if (roworiented) value = v[i*n+j]; 212db4deed7SKarl Rupp else value = v[i+j*m]; 213d40312a9SBarry Smith MatSetValues_SeqBAIJ_A_Private(row,col,value,addv,im[i],in[j]); 21480c1aa95SSatish Balay /* ierr = MatSetValues_SeqBAIJ(baij->A,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 21573959e64SBarry Smith } else if (in[j] < 0) continue; 2162515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 217660746e0SBarry Smith else if (in[j] >= mat->cmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",in[j],mat->cmap->N-1); 218639f9d9dSBarry Smith #endif 21957b952d6SSatish Balay else { 22057b952d6SSatish Balay if (mat->was_assembled) { 221905e6a2fSBarry Smith if (!baij->colmap) { 222ab9863d7SBarry Smith ierr = MatCreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 223905e6a2fSBarry Smith } 224aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 2250f5bd95cSBarry Smith ierr = PetscTableFind(baij->colmap,in[j]/bs + 1,&col);CHKERRQ(ierr); 226bba1ac68SSatish Balay col = col - 1; 22748e59246SSatish Balay #else 228bba1ac68SSatish Balay col = baij->colmap[in[j]/bs] - 1; 22948e59246SSatish Balay #endif 230c9ef50b2SBarry Smith if (col < 0 && !((Mat_SeqBAIJ*)(baij->B->data))->nonew) { 231ab9863d7SBarry Smith ierr = MatDisAssemble_MPIBAIJ(mat);CHKERRQ(ierr); 2328295de27SSatish Balay col = in[j]; 2339bf004c3SSatish Balay /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */ 2349bf004c3SSatish Balay B = baij->B; 2359bf004c3SSatish Balay b = (Mat_SeqBAIJ*)(B)->data; 2369bf004c3SSatish Balay bimax=b->imax;bi=b->i;bilen=b->ilen;bj=b->j; 2379bf004c3SSatish Balay ba =b->a; 238c9ef50b2SBarry Smith } else if (col < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", im[i], in[j]); 239c9ef50b2SBarry Smith else col += in[j]%bs; 2408295de27SSatish Balay } else col = in[j]; 241db4deed7SKarl Rupp if (roworiented) value = v[i*n+j]; 242db4deed7SKarl Rupp else value = v[i+j*m]; 243d40312a9SBarry Smith MatSetValues_SeqBAIJ_B_Private(row,col,value,addv,im[i],in[j]); 24490da58bdSSatish Balay /* ierr = MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 24557b952d6SSatish Balay } 24657b952d6SSatish Balay } 247d64ed03dSBarry Smith } else { 2484cb17eb5SBarry Smith if (mat->nooffprocentries) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Setting off process row %D even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set",im[i]); 24990f02eecSBarry Smith if (!baij->donotstash) { 2505080c13bSMatthew G Knepley mat->assembled = PETSC_FALSE; 251ff2fd236SBarry Smith if (roworiented) { 252b400d20cSBarry Smith ierr = MatStashValuesRow_Private(&mat->stash,im[i],n,in,v+i*n,PETSC_FALSE);CHKERRQ(ierr); 253ff2fd236SBarry Smith } else { 254b400d20cSBarry Smith ierr = MatStashValuesCol_Private(&mat->stash,im[i],n,in,v+i,m,PETSC_FALSE);CHKERRQ(ierr); 25557b952d6SSatish Balay } 25657b952d6SSatish Balay } 25757b952d6SSatish Balay } 25890f02eecSBarry Smith } 2593a40ed3dSBarry Smith PetscFunctionReturn(0); 26057b952d6SSatish Balay } 26157b952d6SSatish Balay 2628ab52850SBarry Smith PETSC_STATIC_INLINE PetscErrorCode MatSetValuesBlocked_SeqBAIJ_Inlined(Mat A,PetscInt row,PetscInt col,const PetscScalar v[],InsertMode is,PetscInt orow,PetscInt ocol) 263880c6e6aSBarry Smith { 264880c6e6aSBarry Smith Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data; 2658ab52850SBarry Smith PetscInt *rp,low,high,t,ii,jj,nrow,i,rmax,N; 266880c6e6aSBarry Smith PetscInt *imax=a->imax,*ai=a->i,*ailen=a->ilen; 267880c6e6aSBarry Smith PetscErrorCode ierr; 2688ab52850SBarry Smith PetscInt *aj =a->j,nonew=a->nonew,bs2=a->bs2,bs=A->rmap->bs; 269880c6e6aSBarry Smith PetscBool roworiented=a->roworiented; 270880c6e6aSBarry Smith const PetscScalar *value = v; 271880c6e6aSBarry Smith MatScalar *ap,*aa = a->a,*bap; 272880c6e6aSBarry Smith 273880c6e6aSBarry Smith PetscFunctionBegin; 274880c6e6aSBarry Smith rp = aj + ai[row]; 275880c6e6aSBarry Smith ap = aa + bs2*ai[row]; 276880c6e6aSBarry Smith rmax = imax[row]; 277880c6e6aSBarry Smith nrow = ailen[row]; 2788ab52850SBarry Smith value = v; 2798ab52850SBarry Smith low = 0; 2808ab52850SBarry Smith high = nrow; 281880c6e6aSBarry Smith while (high-low > 7) { 282880c6e6aSBarry Smith t = (low+high)/2; 283880c6e6aSBarry Smith if (rp[t] > col) high = t; 284880c6e6aSBarry Smith else low = t; 285880c6e6aSBarry Smith } 286880c6e6aSBarry Smith for (i=low; i<high; i++) { 287880c6e6aSBarry Smith if (rp[i] > col) break; 288880c6e6aSBarry Smith if (rp[i] == col) { 289880c6e6aSBarry Smith bap = ap + bs2*i; 290880c6e6aSBarry Smith if (roworiented) { 291880c6e6aSBarry Smith if (is == ADD_VALUES) { 2928ab52850SBarry Smith for (ii=0; ii<bs; ii++) { 293880c6e6aSBarry Smith for (jj=ii; jj<bs2; jj+=bs) { 294880c6e6aSBarry Smith bap[jj] += *value++; 295880c6e6aSBarry Smith } 296880c6e6aSBarry Smith } 297880c6e6aSBarry Smith } else { 2988ab52850SBarry Smith for (ii=0; ii<bs; ii++) { 299880c6e6aSBarry Smith for (jj=ii; jj<bs2; jj+=bs) { 300880c6e6aSBarry Smith bap[jj] = *value++; 301880c6e6aSBarry Smith } 302880c6e6aSBarry Smith } 303880c6e6aSBarry Smith } 304880c6e6aSBarry Smith } else { 305880c6e6aSBarry Smith if (is == ADD_VALUES) { 3068ab52850SBarry Smith for (ii=0; ii<bs; ii++,value+=bs) { 307880c6e6aSBarry Smith for (jj=0; jj<bs; jj++) { 308880c6e6aSBarry Smith bap[jj] += value[jj]; 309880c6e6aSBarry Smith } 310880c6e6aSBarry Smith bap += bs; 311880c6e6aSBarry Smith } 312880c6e6aSBarry Smith } else { 3138ab52850SBarry Smith for (ii=0; ii<bs; ii++,value+=bs) { 314880c6e6aSBarry Smith for (jj=0; jj<bs; jj++) { 315880c6e6aSBarry Smith bap[jj] = value[jj]; 316880c6e6aSBarry Smith } 317880c6e6aSBarry Smith bap += bs; 318880c6e6aSBarry Smith } 319880c6e6aSBarry Smith } 320880c6e6aSBarry Smith } 321880c6e6aSBarry Smith goto noinsert2; 322880c6e6aSBarry Smith } 323880c6e6aSBarry Smith } 324880c6e6aSBarry Smith if (nonew == 1) goto noinsert2; 325880c6e6aSBarry Smith if (nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new global block indexed nonzero block (%D, %D) in the matrix", orow, ocol); 326880c6e6aSBarry Smith MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,row,col,rmax,aa,ai,aj,rp,ap,imax,nonew,MatScalar); 327880c6e6aSBarry Smith N = nrow++ - 1; high++; 328880c6e6aSBarry Smith /* shift up all the later entries in this row */ 329880c6e6aSBarry Smith for (ii=N; ii>=i; ii--) { 330880c6e6aSBarry Smith rp[ii+1] = rp[ii]; 331880c6e6aSBarry Smith ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); 332880c6e6aSBarry Smith } 333880c6e6aSBarry Smith if (N >= i) { 334880c6e6aSBarry Smith ierr = PetscMemzero(ap+bs2*i,bs2*sizeof(MatScalar));CHKERRQ(ierr); 335880c6e6aSBarry Smith } 336880c6e6aSBarry Smith rp[i] = col; 337880c6e6aSBarry Smith bap = ap + bs2*i; 338880c6e6aSBarry Smith if (roworiented) { 3398ab52850SBarry Smith for (ii=0; ii<bs; ii++) { 340880c6e6aSBarry Smith for (jj=ii; jj<bs2; jj+=bs) { 341880c6e6aSBarry Smith bap[jj] = *value++; 342880c6e6aSBarry Smith } 343880c6e6aSBarry Smith } 344880c6e6aSBarry Smith } else { 3458ab52850SBarry Smith for (ii=0; ii<bs; ii++) { 346880c6e6aSBarry Smith for (jj=0; jj<bs; jj++) { 347880c6e6aSBarry Smith *bap++ = *value++; 348880c6e6aSBarry Smith } 349880c6e6aSBarry Smith } 350880c6e6aSBarry Smith } 351880c6e6aSBarry Smith noinsert2:; 352880c6e6aSBarry Smith ailen[row] = nrow; 353880c6e6aSBarry Smith PetscFunctionReturn(0); 354880c6e6aSBarry Smith } 355880c6e6aSBarry Smith 3568ab52850SBarry Smith /* 3578ab52850SBarry Smith This routine should be optimized so that the block copy at ** Here a copy is required ** below is not needed 3588ab52850SBarry Smith by passing additional stride information into the MatSetValuesBlocked_SeqBAIJ_Inlined() routine 3598ab52850SBarry Smith */ 36097e5c40aSBarry Smith PetscErrorCode MatSetValuesBlocked_MPIBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv) 361ab26458aSBarry Smith { 362ab26458aSBarry Smith Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 363dd6ea824SBarry Smith const PetscScalar *value; 364f15d580aSBarry Smith MatScalar *barray = baij->barray; 365ace3abfcSBarry Smith PetscBool roworiented = baij->roworiented; 366dfbe8321SBarry Smith PetscErrorCode ierr; 367899cda47SBarry Smith PetscInt i,j,ii,jj,row,col,rstart=baij->rstartbs; 368899cda47SBarry Smith PetscInt rend=baij->rendbs,cstart=baij->cstartbs,stepval; 369d0f46423SBarry Smith PetscInt cend=baij->cendbs,bs=mat->rmap->bs,bs2=baij->bs2; 370ab26458aSBarry Smith 371b16ae2b1SBarry Smith PetscFunctionBegin; 37230793edcSSatish Balay if (!barray) { 373785e854fSJed Brown ierr = PetscMalloc1(bs2,&barray);CHKERRQ(ierr); 37482502324SSatish Balay baij->barray = barray; 37530793edcSSatish Balay } 37630793edcSSatish Balay 37726fbe8dcSKarl Rupp if (roworiented) stepval = (n-1)*bs; 37826fbe8dcSKarl Rupp else stepval = (m-1)*bs; 37926fbe8dcSKarl Rupp 380ab26458aSBarry Smith for (i=0; i<m; i++) { 3815ef9f2a5SBarry Smith if (im[i] < 0) continue; 3822515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 383bb003d0fSBarry Smith if (im[i] >= baij->Mbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Block indexed row too large %D max %D",im[i],baij->Mbs-1); 384ab26458aSBarry Smith #endif 385ab26458aSBarry Smith if (im[i] >= rstart && im[i] < rend) { 386ab26458aSBarry Smith row = im[i] - rstart; 387ab26458aSBarry Smith for (j=0; j<n; j++) { 38815b57d14SSatish Balay /* If NumCol = 1 then a copy is not required */ 38915b57d14SSatish Balay if ((roworiented) && (n == 1)) { 390f15d580aSBarry Smith barray = (MatScalar*)v + i*bs2; 39115b57d14SSatish Balay } else if ((!roworiented) && (m == 1)) { 392f15d580aSBarry Smith barray = (MatScalar*)v + j*bs2; 39315b57d14SSatish Balay } else { /* Here a copy is required */ 394ab26458aSBarry Smith if (roworiented) { 39553ef36baSBarry Smith value = v + (i*(stepval+bs) + j)*bs; 396ab26458aSBarry Smith } else { 39753ef36baSBarry Smith value = v + (j*(stepval+bs) + i)*bs; 398abef11f7SSatish Balay } 39953ef36baSBarry Smith for (ii=0; ii<bs; ii++,value+=bs+stepval) { 40026fbe8dcSKarl Rupp for (jj=0; jj<bs; jj++) barray[jj] = value[jj]; 40153ef36baSBarry Smith barray += bs; 40247513183SBarry Smith } 40330793edcSSatish Balay barray -= bs2; 40415b57d14SSatish Balay } 405abef11f7SSatish Balay 406abef11f7SSatish Balay if (in[j] >= cstart && in[j] < cend) { 407abef11f7SSatish Balay col = in[j] - cstart; 4088ab52850SBarry Smith ierr = MatSetValuesBlocked_SeqBAIJ_Inlined(baij->A,row,col,barray,addv,im[i],in[j]);CHKERRQ(ierr); 40926fbe8dcSKarl Rupp } else if (in[j] < 0) continue; 4102515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 4118ab52850SBarry Smith else if (in[j] >= baij->Nbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Block indexed column too large %D max %D",in[j],baij->Nbs-1); 412ab26458aSBarry Smith #endif 413ab26458aSBarry Smith else { 414ab26458aSBarry Smith if (mat->was_assembled) { 415ab26458aSBarry Smith if (!baij->colmap) { 416ab9863d7SBarry Smith ierr = MatCreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 417ab26458aSBarry Smith } 418a5eb4965SSatish Balay 4192515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 420aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 421b24ad042SBarry Smith { PetscInt data; 4220f5bd95cSBarry Smith ierr = PetscTableFind(baij->colmap,in[j]+1,&data);CHKERRQ(ierr); 423e32f2f54SBarry Smith if ((data - 1) % bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap"); 424fa46199cSSatish Balay } 42548e59246SSatish Balay #else 426e32f2f54SBarry Smith if ((baij->colmap[in[j]] - 1) % bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap"); 427a5eb4965SSatish Balay #endif 42848e59246SSatish Balay #endif 429aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 4300f5bd95cSBarry Smith ierr = PetscTableFind(baij->colmap,in[j]+1,&col);CHKERRQ(ierr); 431fa46199cSSatish Balay col = (col - 1)/bs; 43248e59246SSatish Balay #else 433a5eb4965SSatish Balay col = (baij->colmap[in[j]] - 1)/bs; 43448e59246SSatish Balay #endif 4350e9bae81SBarry Smith if (col < 0 && !((Mat_SeqBAIJ*)(baij->B->data))->nonew) { 436ab9863d7SBarry Smith ierr = MatDisAssemble_MPIBAIJ(mat);CHKERRQ(ierr); 437ab26458aSBarry Smith col = in[j]; 438bb003d0fSBarry Smith } else if (col < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new blocked indexed nonzero block (%D, %D) into matrix",im[i],in[j]); 439db4deed7SKarl Rupp } else col = in[j]; 4408ab52850SBarry Smith ierr = MatSetValuesBlocked_SeqBAIJ_Inlined(baij->B,row,col,barray,addv,im[i],in[j]);CHKERRQ(ierr); 441ab26458aSBarry Smith } 442ab26458aSBarry Smith } 443d64ed03dSBarry Smith } else { 444bb003d0fSBarry Smith if (mat->nooffprocentries) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Setting off process block indexed row %D even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set",im[i]); 445ab26458aSBarry Smith if (!baij->donotstash) { 446ff2fd236SBarry Smith if (roworiented) { 4476fa18ffdSBarry Smith ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 448ff2fd236SBarry Smith } else { 4496fa18ffdSBarry Smith ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 450ff2fd236SBarry Smith } 451abef11f7SSatish Balay } 452ab26458aSBarry Smith } 453ab26458aSBarry Smith } 4543a40ed3dSBarry Smith PetscFunctionReturn(0); 455ab26458aSBarry Smith } 4566fa18ffdSBarry Smith 4570bdbc534SSatish Balay #define HASH_KEY 0.6180339887 458b24ad042SBarry Smith #define HASH(size,key,tmp) (tmp = (key)*HASH_KEY,(PetscInt)((size)*(tmp-(PetscInt)tmp))) 459b24ad042SBarry Smith /* #define HASH(size,key) ((PetscInt)((size)*fmod(((key)*HASH_KEY),1))) */ 460b24ad042SBarry Smith /* #define HASH(size,key,tmp) ((PetscInt)((size)*fmod(((key)*HASH_KEY),1))) */ 46197e5c40aSBarry Smith PetscErrorCode MatSetValues_MPIBAIJ_HT(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv) 4620bdbc534SSatish Balay { 4630bdbc534SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 464ace3abfcSBarry Smith PetscBool roworiented = baij->roworiented; 465dfbe8321SBarry Smith PetscErrorCode ierr; 466b24ad042SBarry Smith PetscInt i,j,row,col; 467d0f46423SBarry Smith PetscInt rstart_orig=mat->rmap->rstart; 468d0f46423SBarry Smith PetscInt rend_orig =mat->rmap->rend,Nbs=baij->Nbs; 469d0f46423SBarry Smith PetscInt h1,key,size=baij->ht_size,bs=mat->rmap->bs,*HT=baij->ht,idx; 470329f5518SBarry Smith PetscReal tmp; 4713eda8832SBarry Smith MatScalar **HD = baij->hd,value; 4722515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 473b24ad042SBarry Smith PetscInt total_ct=baij->ht_total_ct,insert_ct=baij->ht_insert_ct; 4744a15367fSSatish Balay #endif 4750bdbc534SSatish Balay 4760bdbc534SSatish Balay PetscFunctionBegin; 4770bdbc534SSatish Balay for (i=0; i<m; i++) { 4782515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 479e32f2f54SBarry Smith if (im[i] < 0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative row"); 480e32f2f54SBarry Smith if (im[i] >= mat->rmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],mat->rmap->N-1); 4810bdbc534SSatish Balay #endif 4820bdbc534SSatish Balay row = im[i]; 483c2760754SSatish Balay if (row >= rstart_orig && row < rend_orig) { 4840bdbc534SSatish Balay for (j=0; j<n; j++) { 4850bdbc534SSatish Balay col = in[j]; 486db4deed7SKarl Rupp if (roworiented) value = v[i*n+j]; 487db4deed7SKarl Rupp else value = v[i+j*m]; 488b24ad042SBarry Smith /* Look up PetscInto the Hash Table */ 489c2760754SSatish Balay key = (row/bs)*Nbs+(col/bs)+1; 490c2760754SSatish Balay h1 = HASH(size,key,tmp); 4910bdbc534SSatish Balay 492c2760754SSatish Balay 493c2760754SSatish Balay idx = h1; 4942515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 495187ce0cbSSatish Balay insert_ct++; 496187ce0cbSSatish Balay total_ct++; 497187ce0cbSSatish Balay if (HT[idx] != key) { 498187ce0cbSSatish Balay for (idx=h1; (idx<size) && (HT[idx]!=key); idx++,total_ct++) ; 499187ce0cbSSatish Balay if (idx == size) { 500187ce0cbSSatish Balay for (idx=0; (idx<h1) && (HT[idx]!=key); idx++,total_ct++) ; 501f23aa3ddSBarry Smith if (idx == h1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"(%D,%D) has no entry in the hash table", row, col); 502187ce0cbSSatish Balay } 503187ce0cbSSatish Balay } 504187ce0cbSSatish Balay #else 505c2760754SSatish Balay if (HT[idx] != key) { 506c2760754SSatish Balay for (idx=h1; (idx<size) && (HT[idx]!=key); idx++) ; 507c2760754SSatish Balay if (idx == size) { 508c2760754SSatish Balay for (idx=0; (idx<h1) && (HT[idx]!=key); idx++) ; 509f23aa3ddSBarry Smith if (idx == h1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"(%D,%D) has no entry in the hash table", row, col); 510c2760754SSatish Balay } 511c2760754SSatish Balay } 512187ce0cbSSatish Balay #endif 513c2760754SSatish Balay /* A HASH table entry is found, so insert the values at the correct address */ 514c2760754SSatish Balay if (addv == ADD_VALUES) *(HD[idx]+ (col % bs)*bs + (row % bs)) += value; 515c2760754SSatish Balay else *(HD[idx]+ (col % bs)*bs + (row % bs)) = value; 5160bdbc534SSatish Balay } 51726fbe8dcSKarl Rupp } else if (!baij->donotstash) { 518ff2fd236SBarry Smith if (roworiented) { 519b400d20cSBarry Smith ierr = MatStashValuesRow_Private(&mat->stash,im[i],n,in,v+i*n,PETSC_FALSE);CHKERRQ(ierr); 520ff2fd236SBarry Smith } else { 521b400d20cSBarry Smith ierr = MatStashValuesCol_Private(&mat->stash,im[i],n,in,v+i,m,PETSC_FALSE);CHKERRQ(ierr); 5220bdbc534SSatish Balay } 5230bdbc534SSatish Balay } 5240bdbc534SSatish Balay } 5252515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 526abf3b562SBarry Smith baij->ht_total_ct += total_ct; 527abf3b562SBarry Smith baij->ht_insert_ct += insert_ct; 528187ce0cbSSatish Balay #endif 5290bdbc534SSatish Balay PetscFunctionReturn(0); 5300bdbc534SSatish Balay } 5310bdbc534SSatish Balay 53297e5c40aSBarry Smith PetscErrorCode MatSetValuesBlocked_MPIBAIJ_HT(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv) 5330bdbc534SSatish Balay { 5340bdbc534SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 535ace3abfcSBarry Smith PetscBool roworiented = baij->roworiented; 536dfbe8321SBarry Smith PetscErrorCode ierr; 537b24ad042SBarry Smith PetscInt i,j,ii,jj,row,col; 538899cda47SBarry Smith PetscInt rstart=baij->rstartbs; 539d0f46423SBarry Smith PetscInt rend =mat->rmap->rend,stepval,bs=mat->rmap->bs,bs2=baij->bs2,nbs2=n*bs2; 540b24ad042SBarry Smith PetscInt h1,key,size=baij->ht_size,idx,*HT=baij->ht,Nbs=baij->Nbs; 541329f5518SBarry Smith PetscReal tmp; 5423eda8832SBarry Smith MatScalar **HD = baij->hd,*baij_a; 543dd6ea824SBarry Smith const PetscScalar *v_t,*value; 5442515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 545b24ad042SBarry Smith PetscInt total_ct=baij->ht_total_ct,insert_ct=baij->ht_insert_ct; 5464a15367fSSatish Balay #endif 5470bdbc534SSatish Balay 548d0a41580SSatish Balay PetscFunctionBegin; 54926fbe8dcSKarl Rupp if (roworiented) stepval = (n-1)*bs; 55026fbe8dcSKarl Rupp else stepval = (m-1)*bs; 55126fbe8dcSKarl Rupp 5520bdbc534SSatish Balay for (i=0; i<m; i++) { 5532515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 554e32f2f54SBarry Smith if (im[i] < 0) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %D",im[i]); 555e32f2f54SBarry Smith if (im[i] >= baij->Mbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],baij->Mbs-1); 5560bdbc534SSatish Balay #endif 5570bdbc534SSatish Balay row = im[i]; 558ab715e2cSSatish Balay v_t = v + i*nbs2; 559c2760754SSatish Balay if (row >= rstart && row < rend) { 5600bdbc534SSatish Balay for (j=0; j<n; j++) { 5610bdbc534SSatish Balay col = in[j]; 5620bdbc534SSatish Balay 5630bdbc534SSatish Balay /* Look up into the Hash Table */ 564c2760754SSatish Balay key = row*Nbs+col+1; 565c2760754SSatish Balay h1 = HASH(size,key,tmp); 5660bdbc534SSatish Balay 567c2760754SSatish Balay idx = h1; 5682515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 569187ce0cbSSatish Balay total_ct++; 570187ce0cbSSatish Balay insert_ct++; 571187ce0cbSSatish Balay if (HT[idx] != key) { 572187ce0cbSSatish Balay for (idx=h1; (idx<size) && (HT[idx]!=key); idx++,total_ct++) ; 573187ce0cbSSatish Balay if (idx == size) { 574187ce0cbSSatish Balay for (idx=0; (idx<h1) && (HT[idx]!=key); idx++,total_ct++) ; 575f23aa3ddSBarry Smith if (idx == h1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"(%D,%D) has no entry in the hash table", row, col); 576187ce0cbSSatish Balay } 577187ce0cbSSatish Balay } 578187ce0cbSSatish Balay #else 579c2760754SSatish Balay if (HT[idx] != key) { 580c2760754SSatish Balay for (idx=h1; (idx<size) && (HT[idx]!=key); idx++) ; 581c2760754SSatish Balay if (idx == size) { 582c2760754SSatish Balay for (idx=0; (idx<h1) && (HT[idx]!=key); idx++) ; 583f23aa3ddSBarry Smith if (idx == h1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"(%D,%D) has no entry in the hash table", row, col); 584c2760754SSatish Balay } 585c2760754SSatish Balay } 586187ce0cbSSatish Balay #endif 587c2760754SSatish Balay baij_a = HD[idx]; 5880bdbc534SSatish Balay if (roworiented) { 589c2760754SSatish Balay /*value = v + i*(stepval+bs)*bs + j*bs;*/ 590187ce0cbSSatish Balay /* value = v + (i*(stepval+bs)+j)*bs; */ 591187ce0cbSSatish Balay value = v_t; 592187ce0cbSSatish Balay v_t += bs; 593fef45726SSatish Balay if (addv == ADD_VALUES) { 594c2760754SSatish Balay for (ii=0; ii<bs; ii++,value+=stepval) { 595c2760754SSatish Balay for (jj=ii; jj<bs2; jj+=bs) { 596fef45726SSatish Balay baij_a[jj] += *value++; 597b4cc0f5aSSatish Balay } 598b4cc0f5aSSatish Balay } 599fef45726SSatish Balay } else { 600c2760754SSatish Balay for (ii=0; ii<bs; ii++,value+=stepval) { 601c2760754SSatish Balay for (jj=ii; jj<bs2; jj+=bs) { 602fef45726SSatish Balay baij_a[jj] = *value++; 603fef45726SSatish Balay } 604fef45726SSatish Balay } 605fef45726SSatish Balay } 6060bdbc534SSatish Balay } else { 6070bdbc534SSatish Balay value = v + j*(stepval+bs)*bs + i*bs; 608fef45726SSatish Balay if (addv == ADD_VALUES) { 609b4cc0f5aSSatish Balay for (ii=0; ii<bs; ii++,value+=stepval,baij_a+=bs) { 6100bdbc534SSatish Balay for (jj=0; jj<bs; jj++) { 611fef45726SSatish Balay baij_a[jj] += *value++; 612fef45726SSatish Balay } 613fef45726SSatish Balay } 614fef45726SSatish Balay } else { 615fef45726SSatish Balay for (ii=0; ii<bs; ii++,value+=stepval,baij_a+=bs) { 616fef45726SSatish Balay for (jj=0; jj<bs; jj++) { 617fef45726SSatish Balay baij_a[jj] = *value++; 618fef45726SSatish Balay } 619b4cc0f5aSSatish Balay } 6200bdbc534SSatish Balay } 6210bdbc534SSatish Balay } 6220bdbc534SSatish Balay } 6230bdbc534SSatish Balay } else { 6240bdbc534SSatish Balay if (!baij->donotstash) { 6250bdbc534SSatish Balay if (roworiented) { 6268798bf22SSatish Balay ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 6270bdbc534SSatish Balay } else { 6288798bf22SSatish Balay ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 6290bdbc534SSatish Balay } 6300bdbc534SSatish Balay } 6310bdbc534SSatish Balay } 6320bdbc534SSatish Balay } 6332515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 634abf3b562SBarry Smith baij->ht_total_ct += total_ct; 635abf3b562SBarry Smith baij->ht_insert_ct += insert_ct; 636187ce0cbSSatish Balay #endif 6370bdbc534SSatish Balay PetscFunctionReturn(0); 6380bdbc534SSatish Balay } 639133cdb44SSatish Balay 640b24ad042SBarry Smith PetscErrorCode MatGetValues_MPIBAIJ(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[]) 641d6de1c52SSatish Balay { 642d6de1c52SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 6436849ba73SBarry Smith PetscErrorCode ierr; 644d0f46423SBarry Smith PetscInt bs = mat->rmap->bs,i,j,bsrstart = mat->rmap->rstart,bsrend = mat->rmap->rend; 645d0f46423SBarry Smith PetscInt bscstart = mat->cmap->rstart,bscend = mat->cmap->rend,row,col,data; 646d6de1c52SSatish Balay 647133cdb44SSatish Balay PetscFunctionBegin; 648d6de1c52SSatish Balay for (i=0; i<m; i++) { 649e32f2f54SBarry Smith if (idxm[i] < 0) continue; /* SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %D",idxm[i]);*/ 650e32f2f54SBarry Smith if (idxm[i] >= mat->rmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",idxm[i],mat->rmap->N-1); 651d6de1c52SSatish Balay if (idxm[i] >= bsrstart && idxm[i] < bsrend) { 652d6de1c52SSatish Balay row = idxm[i] - bsrstart; 653d6de1c52SSatish Balay for (j=0; j<n; j++) { 654e32f2f54SBarry Smith if (idxn[j] < 0) continue; /* SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative column: %D",idxn[j]); */ 655e32f2f54SBarry Smith if (idxn[j] >= mat->cmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",idxn[j],mat->cmap->N-1); 656d6de1c52SSatish Balay if (idxn[j] >= bscstart && idxn[j] < bscend) { 657d6de1c52SSatish Balay col = idxn[j] - bscstart; 65898dd23e9SBarry Smith ierr = MatGetValues_SeqBAIJ(baij->A,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr); 659d64ed03dSBarry Smith } else { 660905e6a2fSBarry Smith if (!baij->colmap) { 661ab9863d7SBarry Smith ierr = MatCreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 662905e6a2fSBarry Smith } 663aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 6640f5bd95cSBarry Smith ierr = PetscTableFind(baij->colmap,idxn[j]/bs+1,&data);CHKERRQ(ierr); 665fa46199cSSatish Balay data--; 66648e59246SSatish Balay #else 66748e59246SSatish Balay data = baij->colmap[idxn[j]/bs]-1; 66848e59246SSatish Balay #endif 66948e59246SSatish Balay if ((data < 0) || (baij->garray[data/bs] != idxn[j]/bs)) *(v+i*n+j) = 0.0; 670d9d09a02SSatish Balay else { 67148e59246SSatish Balay col = data + idxn[j]%bs; 67298dd23e9SBarry Smith ierr = MatGetValues_SeqBAIJ(baij->B,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr); 673d6de1c52SSatish Balay } 674d6de1c52SSatish Balay } 675d6de1c52SSatish Balay } 676f23aa3ddSBarry Smith } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local values currently supported"); 677d6de1c52SSatish Balay } 6783a40ed3dSBarry Smith PetscFunctionReturn(0); 679d6de1c52SSatish Balay } 680d6de1c52SSatish Balay 681dfbe8321SBarry Smith PetscErrorCode MatNorm_MPIBAIJ(Mat mat,NormType type,PetscReal *nrm) 682d6de1c52SSatish Balay { 683d6de1c52SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 684d6de1c52SSatish Balay Mat_SeqBAIJ *amat = (Mat_SeqBAIJ*)baij->A->data,*bmat = (Mat_SeqBAIJ*)baij->B->data; 685dfbe8321SBarry Smith PetscErrorCode ierr; 686d0f46423SBarry Smith PetscInt i,j,bs2=baij->bs2,bs=baij->A->rmap->bs,nz,row,col; 687329f5518SBarry Smith PetscReal sum = 0.0; 6883eda8832SBarry Smith MatScalar *v; 689d6de1c52SSatish Balay 690d64ed03dSBarry Smith PetscFunctionBegin; 691d6de1c52SSatish Balay if (baij->size == 1) { 692064f8208SBarry Smith ierr = MatNorm(baij->A,type,nrm);CHKERRQ(ierr); 693d6de1c52SSatish Balay } else { 694d6de1c52SSatish Balay if (type == NORM_FROBENIUS) { 695d6de1c52SSatish Balay v = amat->a; 6968a62d963SHong Zhang nz = amat->nz*bs2; 6978a62d963SHong Zhang for (i=0; i<nz; i++) { 698329f5518SBarry Smith sum += PetscRealPart(PetscConj(*v)*(*v)); v++; 699d6de1c52SSatish Balay } 700d6de1c52SSatish Balay v = bmat->a; 7018a62d963SHong Zhang nz = bmat->nz*bs2; 7028a62d963SHong Zhang for (i=0; i<nz; i++) { 703329f5518SBarry Smith sum += PetscRealPart(PetscConj(*v)*(*v)); v++; 704d6de1c52SSatish Balay } 705b2566f29SBarry Smith ierr = MPIU_Allreduce(&sum,nrm,1,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 7068f1a2a5eSBarry Smith *nrm = PetscSqrtReal(*nrm); 7078a62d963SHong Zhang } else if (type == NORM_1) { /* max column sum */ 7088a62d963SHong Zhang PetscReal *tmp,*tmp2; 709899cda47SBarry Smith PetscInt *jj,*garray=baij->garray,cstart=baij->rstartbs; 710dcca6d9dSJed Brown ierr = PetscMalloc2(mat->cmap->N,&tmp,mat->cmap->N,&tmp2);CHKERRQ(ierr); 711d0f46423SBarry Smith ierr = PetscMemzero(tmp,mat->cmap->N*sizeof(PetscReal));CHKERRQ(ierr); 7128a62d963SHong Zhang v = amat->a; jj = amat->j; 7138a62d963SHong Zhang for (i=0; i<amat->nz; i++) { 7148a62d963SHong Zhang for (j=0; j<bs; j++) { 7158a62d963SHong Zhang col = bs*(cstart + *jj) + j; /* column index */ 7168a62d963SHong Zhang for (row=0; row<bs; row++) { 7178a62d963SHong Zhang tmp[col] += PetscAbsScalar(*v); v++; 7188a62d963SHong Zhang } 7198a62d963SHong Zhang } 7208a62d963SHong Zhang jj++; 7218a62d963SHong Zhang } 7228a62d963SHong Zhang v = bmat->a; jj = bmat->j; 7238a62d963SHong Zhang for (i=0; i<bmat->nz; i++) { 7248a62d963SHong Zhang for (j=0; j<bs; j++) { 7258a62d963SHong Zhang col = bs*garray[*jj] + j; 7268a62d963SHong Zhang for (row=0; row<bs; row++) { 7278a62d963SHong Zhang tmp[col] += PetscAbsScalar(*v); v++; 7288a62d963SHong Zhang } 7298a62d963SHong Zhang } 7308a62d963SHong Zhang jj++; 7318a62d963SHong Zhang } 732b2566f29SBarry Smith ierr = MPIU_Allreduce(tmp,tmp2,mat->cmap->N,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 7338a62d963SHong Zhang *nrm = 0.0; 734d0f46423SBarry Smith for (j=0; j<mat->cmap->N; j++) { 7358a62d963SHong Zhang if (tmp2[j] > *nrm) *nrm = tmp2[j]; 7368a62d963SHong Zhang } 737fca92195SBarry Smith ierr = PetscFree2(tmp,tmp2);CHKERRQ(ierr); 7388a62d963SHong Zhang } else if (type == NORM_INFINITY) { /* max row sum */ 739577dd1f9SKris Buschelman PetscReal *sums; 740785e854fSJed Brown ierr = PetscMalloc1(bs,&sums);CHKERRQ(ierr); 7418a62d963SHong Zhang sum = 0.0; 7428a62d963SHong Zhang for (j=0; j<amat->mbs; j++) { 7438a62d963SHong Zhang for (row=0; row<bs; row++) sums[row] = 0.0; 7448a62d963SHong Zhang v = amat->a + bs2*amat->i[j]; 7458a62d963SHong Zhang nz = amat->i[j+1]-amat->i[j]; 7468a62d963SHong Zhang for (i=0; i<nz; i++) { 7478a62d963SHong Zhang for (col=0; col<bs; col++) { 7488a62d963SHong Zhang for (row=0; row<bs; row++) { 7498a62d963SHong Zhang sums[row] += PetscAbsScalar(*v); v++; 7508a62d963SHong Zhang } 7518a62d963SHong Zhang } 7528a62d963SHong Zhang } 7538a62d963SHong Zhang v = bmat->a + bs2*bmat->i[j]; 7548a62d963SHong Zhang nz = bmat->i[j+1]-bmat->i[j]; 7558a62d963SHong Zhang for (i=0; i<nz; i++) { 7568a62d963SHong Zhang for (col=0; col<bs; col++) { 7578a62d963SHong Zhang for (row=0; row<bs; row++) { 7588a62d963SHong Zhang sums[row] += PetscAbsScalar(*v); v++; 7598a62d963SHong Zhang } 7608a62d963SHong Zhang } 7618a62d963SHong Zhang } 7628a62d963SHong Zhang for (row=0; row<bs; row++) { 7638a62d963SHong Zhang if (sums[row] > sum) sum = sums[row]; 7648a62d963SHong Zhang } 7658a62d963SHong Zhang } 766b2566f29SBarry Smith ierr = MPIU_Allreduce(&sum,nrm,1,MPIU_REAL,MPIU_MAX,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 767577dd1f9SKris Buschelman ierr = PetscFree(sums);CHKERRQ(ierr); 768ce94432eSBarry Smith } else SETERRQ(PetscObjectComm((PetscObject)mat),PETSC_ERR_SUP,"No support for this norm yet"); 769d64ed03dSBarry Smith } 7703a40ed3dSBarry Smith PetscFunctionReturn(0); 771d6de1c52SSatish Balay } 77257b952d6SSatish Balay 773fef45726SSatish Balay /* 774fef45726SSatish Balay Creates the hash table, and sets the table 775fef45726SSatish Balay This table is created only once. 776fef45726SSatish Balay If new entried need to be added to the matrix 777fef45726SSatish Balay then the hash table has to be destroyed and 778fef45726SSatish Balay recreated. 779fef45726SSatish Balay */ 780dfbe8321SBarry Smith PetscErrorCode MatCreateHashTable_MPIBAIJ_Private(Mat mat,PetscReal factor) 781596b8d2eSBarry Smith { 782596b8d2eSBarry Smith Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 783596b8d2eSBarry Smith Mat A = baij->A,B=baij->B; 784596b8d2eSBarry Smith Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data,*b=(Mat_SeqBAIJ*)B->data; 785b24ad042SBarry Smith PetscInt i,j,k,nz=a->nz+b->nz,h1,*ai=a->i,*aj=a->j,*bi=b->i,*bj=b->j; 7866849ba73SBarry Smith PetscErrorCode ierr; 787fca92195SBarry Smith PetscInt ht_size,bs2=baij->bs2,rstart=baij->rstartbs; 788899cda47SBarry Smith PetscInt cstart=baij->cstartbs,*garray=baij->garray,row,col,Nbs=baij->Nbs; 789b24ad042SBarry Smith PetscInt *HT,key; 7903eda8832SBarry Smith MatScalar **HD; 791329f5518SBarry Smith PetscReal tmp; 7926cf91177SBarry Smith #if defined(PETSC_USE_INFO) 793b24ad042SBarry Smith PetscInt ct=0,max=0; 7944a15367fSSatish Balay #endif 795fef45726SSatish Balay 796d64ed03dSBarry Smith PetscFunctionBegin; 797fca92195SBarry Smith if (baij->ht) PetscFunctionReturn(0); 798fef45726SSatish Balay 799fca92195SBarry Smith baij->ht_size = (PetscInt)(factor*nz); 800fca92195SBarry Smith ht_size = baij->ht_size; 8010bdbc534SSatish Balay 802fef45726SSatish Balay /* Allocate Memory for Hash Table */ 8031795a4d1SJed Brown ierr = PetscCalloc2(ht_size,&baij->hd,ht_size,&baij->ht);CHKERRQ(ierr); 804b9e4cc15SSatish Balay HD = baij->hd; 805a07cd24cSSatish Balay HT = baij->ht; 806b9e4cc15SSatish Balay 807596b8d2eSBarry Smith /* Loop Over A */ 8080bdbc534SSatish Balay for (i=0; i<a->mbs; i++) { 809596b8d2eSBarry Smith for (j=ai[i]; j<ai[i+1]; j++) { 8100bdbc534SSatish Balay row = i+rstart; 8110bdbc534SSatish Balay col = aj[j]+cstart; 812596b8d2eSBarry Smith 813187ce0cbSSatish Balay key = row*Nbs + col + 1; 814fca92195SBarry Smith h1 = HASH(ht_size,key,tmp); 815fca92195SBarry Smith for (k=0; k<ht_size; k++) { 816fca92195SBarry Smith if (!HT[(h1+k)%ht_size]) { 817fca92195SBarry Smith HT[(h1+k)%ht_size] = key; 818fca92195SBarry Smith HD[(h1+k)%ht_size] = a->a + j*bs2; 819596b8d2eSBarry Smith break; 8206cf91177SBarry Smith #if defined(PETSC_USE_INFO) 821187ce0cbSSatish Balay } else { 822187ce0cbSSatish Balay ct++; 823187ce0cbSSatish Balay #endif 824596b8d2eSBarry Smith } 825187ce0cbSSatish Balay } 8266cf91177SBarry Smith #if defined(PETSC_USE_INFO) 827187ce0cbSSatish Balay if (k> max) max = k; 828187ce0cbSSatish Balay #endif 829596b8d2eSBarry Smith } 830596b8d2eSBarry Smith } 831596b8d2eSBarry Smith /* Loop Over B */ 8320bdbc534SSatish Balay for (i=0; i<b->mbs; i++) { 833596b8d2eSBarry Smith for (j=bi[i]; j<bi[i+1]; j++) { 8340bdbc534SSatish Balay row = i+rstart; 8350bdbc534SSatish Balay col = garray[bj[j]]; 836187ce0cbSSatish Balay key = row*Nbs + col + 1; 837fca92195SBarry Smith h1 = HASH(ht_size,key,tmp); 838fca92195SBarry Smith for (k=0; k<ht_size; k++) { 839fca92195SBarry Smith if (!HT[(h1+k)%ht_size]) { 840fca92195SBarry Smith HT[(h1+k)%ht_size] = key; 841fca92195SBarry Smith HD[(h1+k)%ht_size] = b->a + j*bs2; 842596b8d2eSBarry Smith break; 8436cf91177SBarry Smith #if defined(PETSC_USE_INFO) 844187ce0cbSSatish Balay } else { 845187ce0cbSSatish Balay ct++; 846187ce0cbSSatish Balay #endif 847596b8d2eSBarry Smith } 848187ce0cbSSatish Balay } 8496cf91177SBarry Smith #if defined(PETSC_USE_INFO) 850187ce0cbSSatish Balay if (k> max) max = k; 851187ce0cbSSatish Balay #endif 852596b8d2eSBarry Smith } 853596b8d2eSBarry Smith } 854596b8d2eSBarry Smith 855596b8d2eSBarry Smith /* Print Summary */ 8566cf91177SBarry Smith #if defined(PETSC_USE_INFO) 857fca92195SBarry Smith for (i=0,j=0; i<ht_size; i++) { 85826fbe8dcSKarl Rupp if (HT[i]) j++; 859c38d4ed2SBarry Smith } 8601e2582c4SBarry Smith ierr = PetscInfo2(mat,"Average Search = %5.2f,max search = %D\n",(!j)? 0.0:((PetscReal)(ct+j))/j,max);CHKERRQ(ierr); 861187ce0cbSSatish Balay #endif 8623a40ed3dSBarry Smith PetscFunctionReturn(0); 863596b8d2eSBarry Smith } 86457b952d6SSatish Balay 865dfbe8321SBarry Smith PetscErrorCode MatAssemblyBegin_MPIBAIJ(Mat mat,MatAssemblyType mode) 866bbb85fb3SSatish Balay { 867bbb85fb3SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 868dfbe8321SBarry Smith PetscErrorCode ierr; 869b24ad042SBarry Smith PetscInt nstash,reallocs; 870bbb85fb3SSatish Balay 871bbb85fb3SSatish Balay PetscFunctionBegin; 87226fbe8dcSKarl Rupp if (baij->donotstash || mat->nooffprocentries) PetscFunctionReturn(0); 873bbb85fb3SSatish Balay 874d0f46423SBarry Smith ierr = MatStashScatterBegin_Private(mat,&mat->stash,mat->rmap->range);CHKERRQ(ierr); 8751e2582c4SBarry Smith ierr = MatStashScatterBegin_Private(mat,&mat->bstash,baij->rangebs);CHKERRQ(ierr); 8768798bf22SSatish Balay ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr); 8771e2582c4SBarry Smith ierr = PetscInfo2(mat,"Stash has %D entries,uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr); 87846680499SSatish Balay ierr = MatStashGetInfo_Private(&mat->bstash,&nstash,&reallocs);CHKERRQ(ierr); 8791e2582c4SBarry Smith ierr = PetscInfo2(mat,"Block-Stash has %D entries, uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr); 880bbb85fb3SSatish Balay PetscFunctionReturn(0); 881bbb85fb3SSatish Balay } 882bbb85fb3SSatish Balay 883dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_MPIBAIJ(Mat mat,MatAssemblyType mode) 884bbb85fb3SSatish Balay { 885bbb85fb3SSatish Balay Mat_MPIBAIJ *baij=(Mat_MPIBAIJ*)mat->data; 88691c97fd4SSatish Balay Mat_SeqBAIJ *a =(Mat_SeqBAIJ*)baij->A->data; 8876849ba73SBarry Smith PetscErrorCode ierr; 888b24ad042SBarry Smith PetscInt i,j,rstart,ncols,flg,bs2=baij->bs2; 889e44c0bd4SBarry Smith PetscInt *row,*col; 890ace3abfcSBarry Smith PetscBool r1,r2,r3,other_disassembled; 8913eda8832SBarry Smith MatScalar *val; 892b24ad042SBarry Smith PetscMPIInt n; 893bbb85fb3SSatish Balay 894bbb85fb3SSatish Balay PetscFunctionBegin; 8955fd66863SKarl Rupp /* do not use 'b=(Mat_SeqBAIJ*)baij->B->data' as B can be reset in disassembly */ 8964cb17eb5SBarry Smith if (!baij->donotstash && !mat->nooffprocentries) { 897a2d1c673SSatish Balay while (1) { 8988798bf22SSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 899a2d1c673SSatish Balay if (!flg) break; 900a2d1c673SSatish Balay 901bbb85fb3SSatish Balay for (i=0; i<n;) { 902bbb85fb3SSatish Balay /* Now identify the consecutive vals belonging to the same row */ 90326fbe8dcSKarl Rupp for (j=i,rstart=row[j]; j<n; j++) { 90426fbe8dcSKarl Rupp if (row[j] != rstart) break; 90526fbe8dcSKarl Rupp } 906bbb85fb3SSatish Balay if (j < n) ncols = j-i; 907bbb85fb3SSatish Balay else ncols = n-i; 908bbb85fb3SSatish Balay /* Now assemble all these values with a single function call */ 9094b4eb8d3SJed Brown ierr = MatSetValues_MPIBAIJ(mat,1,row+i,ncols,col+i,val+i,mat->insertmode);CHKERRQ(ierr); 910bbb85fb3SSatish Balay i = j; 911bbb85fb3SSatish Balay } 912bbb85fb3SSatish Balay } 9138798bf22SSatish Balay ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr); 914a2d1c673SSatish Balay /* Now process the block-stash. Since the values are stashed column-oriented, 915a2d1c673SSatish Balay set the roworiented flag to column oriented, and after MatSetValues() 916a2d1c673SSatish Balay restore the original flags */ 917a2d1c673SSatish Balay r1 = baij->roworiented; 918a2d1c673SSatish Balay r2 = a->roworiented; 91991c97fd4SSatish Balay r3 = ((Mat_SeqBAIJ*)baij->B->data)->roworiented; 92026fbe8dcSKarl Rupp 9217c922b88SBarry Smith baij->roworiented = PETSC_FALSE; 9227c922b88SBarry Smith a->roworiented = PETSC_FALSE; 92326fbe8dcSKarl Rupp 92491c97fd4SSatish Balay (((Mat_SeqBAIJ*)baij->B->data))->roworiented = PETSC_FALSE; /* b->roworiented */ 925a2d1c673SSatish Balay while (1) { 9268798bf22SSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->bstash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 927a2d1c673SSatish Balay if (!flg) break; 928a2d1c673SSatish Balay 929a2d1c673SSatish Balay for (i=0; i<n;) { 930a2d1c673SSatish Balay /* Now identify the consecutive vals belonging to the same row */ 93126fbe8dcSKarl Rupp for (j=i,rstart=row[j]; j<n; j++) { 93226fbe8dcSKarl Rupp if (row[j] != rstart) break; 93326fbe8dcSKarl Rupp } 934a2d1c673SSatish Balay if (j < n) ncols = j-i; 935a2d1c673SSatish Balay else ncols = n-i; 9364b4eb8d3SJed Brown ierr = MatSetValuesBlocked_MPIBAIJ(mat,1,row+i,ncols,col+i,val+i*bs2,mat->insertmode);CHKERRQ(ierr); 937a2d1c673SSatish Balay i = j; 938a2d1c673SSatish Balay } 939a2d1c673SSatish Balay } 9408798bf22SSatish Balay ierr = MatStashScatterEnd_Private(&mat->bstash);CHKERRQ(ierr); 94126fbe8dcSKarl Rupp 942a2d1c673SSatish Balay baij->roworiented = r1; 943a2d1c673SSatish Balay a->roworiented = r2; 94426fbe8dcSKarl Rupp 94591c97fd4SSatish Balay ((Mat_SeqBAIJ*)baij->B->data)->roworiented = r3; /* b->roworiented */ 946bbb85fb3SSatish Balay } 947bbb85fb3SSatish Balay 948bbb85fb3SSatish Balay ierr = MatAssemblyBegin(baij->A,mode);CHKERRQ(ierr); 949bbb85fb3SSatish Balay ierr = MatAssemblyEnd(baij->A,mode);CHKERRQ(ierr); 950bbb85fb3SSatish Balay 951bbb85fb3SSatish Balay /* determine if any processor has disassembled, if so we must 952bbb85fb3SSatish Balay also disassemble ourselfs, in order that we may reassemble. */ 953bbb85fb3SSatish Balay /* 954bbb85fb3SSatish Balay if nonzero structure of submatrix B cannot change then we know that 955bbb85fb3SSatish Balay no processor disassembled thus we can skip this stuff 956bbb85fb3SSatish Balay */ 957bbb85fb3SSatish Balay if (!((Mat_SeqBAIJ*)baij->B->data)->nonew) { 958b2566f29SBarry Smith ierr = MPIU_Allreduce(&mat->was_assembled,&other_disassembled,1,MPIU_BOOL,MPI_PROD,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 959bbb85fb3SSatish Balay if (mat->was_assembled && !other_disassembled) { 960ab9863d7SBarry Smith ierr = MatDisAssemble_MPIBAIJ(mat);CHKERRQ(ierr); 961bbb85fb3SSatish Balay } 962bbb85fb3SSatish Balay } 963bbb85fb3SSatish Balay 964bbb85fb3SSatish Balay if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) { 965bbb85fb3SSatish Balay ierr = MatSetUpMultiply_MPIBAIJ(mat);CHKERRQ(ierr); 966bbb85fb3SSatish Balay } 967bbb85fb3SSatish Balay ierr = MatAssemblyBegin(baij->B,mode);CHKERRQ(ierr); 968bbb85fb3SSatish Balay ierr = MatAssemblyEnd(baij->B,mode);CHKERRQ(ierr); 969bbb85fb3SSatish Balay 9706cf91177SBarry Smith #if defined(PETSC_USE_INFO) 971bbb85fb3SSatish Balay if (baij->ht && mode== MAT_FINAL_ASSEMBLY) { 972abf3b562SBarry Smith ierr = PetscInfo1(mat,"Average Hash Table Search in MatSetValues = %5.2f\n",(double)((PetscReal)baij->ht_total_ct)/baij->ht_insert_ct);CHKERRQ(ierr); 97326fbe8dcSKarl Rupp 974bbb85fb3SSatish Balay baij->ht_total_ct = 0; 975bbb85fb3SSatish Balay baij->ht_insert_ct = 0; 976bbb85fb3SSatish Balay } 977bbb85fb3SSatish Balay #endif 978bbb85fb3SSatish Balay if (baij->ht_flag && !baij->ht && mode == MAT_FINAL_ASSEMBLY) { 979bbb85fb3SSatish Balay ierr = MatCreateHashTable_MPIBAIJ_Private(mat,baij->ht_fact);CHKERRQ(ierr); 98026fbe8dcSKarl Rupp 981bbb85fb3SSatish Balay mat->ops->setvalues = MatSetValues_MPIBAIJ_HT; 982bbb85fb3SSatish Balay mat->ops->setvaluesblocked = MatSetValuesBlocked_MPIBAIJ_HT; 983bbb85fb3SSatish Balay } 984bbb85fb3SSatish Balay 985fca92195SBarry Smith ierr = PetscFree2(baij->rowvalues,baij->rowindices);CHKERRQ(ierr); 98626fbe8dcSKarl Rupp 987606d414cSSatish Balay baij->rowvalues = 0; 9884f9cfa9eSBarry Smith 9894f9cfa9eSBarry Smith /* if no new nonzero locations are allowed in matrix then only set the matrix state the first time through */ 9904f9cfa9eSBarry Smith if ((!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) || !((Mat_SeqBAIJ*)(baij->A->data))->nonew) { 991e56f5c9eSBarry Smith PetscObjectState state = baij->A->nonzerostate + baij->B->nonzerostate; 992b2566f29SBarry Smith ierr = MPIU_Allreduce(&state,&mat->nonzerostate,1,MPIU_INT64,MPI_SUM,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 993e56f5c9eSBarry Smith } 994bbb85fb3SSatish Balay PetscFunctionReturn(0); 995bbb85fb3SSatish Balay } 99657b952d6SSatish Balay 9977da1fb6eSBarry Smith extern PetscErrorCode MatView_SeqBAIJ(Mat,PetscViewer); 9989804daf3SBarry Smith #include <petscdraw.h> 9996849ba73SBarry Smith static PetscErrorCode MatView_MPIBAIJ_ASCIIorDraworSocket(Mat mat,PetscViewer viewer) 100057b952d6SSatish Balay { 100157b952d6SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 1002dfbe8321SBarry Smith PetscErrorCode ierr; 10037da1fb6eSBarry Smith PetscMPIInt rank = baij->rank; 1004d0f46423SBarry Smith PetscInt bs = mat->rmap->bs; 1005ace3abfcSBarry Smith PetscBool iascii,isdraw; 1006b0a32e0cSBarry Smith PetscViewer sviewer; 1007f3ef73ceSBarry Smith PetscViewerFormat format; 100857b952d6SSatish Balay 1009d64ed03dSBarry Smith PetscFunctionBegin; 1010251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr); 1011251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr); 101232077d6dSBarry Smith if (iascii) { 1013b0a32e0cSBarry Smith ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr); 1014456192e2SBarry Smith if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 10154e220ebcSLois Curfman McInnes MatInfo info; 1016ce94432eSBarry Smith ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)mat),&rank);CHKERRQ(ierr); 1017d41123aaSBarry Smith ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr); 10181575c14dSBarry Smith ierr = PetscViewerASCIIPushSynchronized(viewer);CHKERRQ(ierr); 1019b1e9c6f1SBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Local rows %D nz %D nz alloced %D bs %D mem %g\n", 1020b1e9c6f1SBarry Smith rank,mat->rmap->n,(PetscInt)info.nz_used,(PetscInt)info.nz_allocated,mat->rmap->bs,(double)info.memory);CHKERRQ(ierr); 1021d132466eSBarry Smith ierr = MatGetInfo(baij->A,MAT_LOCAL,&info);CHKERRQ(ierr); 1022e6dd01d4SJed Brown ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] on-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used);CHKERRQ(ierr); 1023d132466eSBarry Smith ierr = MatGetInfo(baij->B,MAT_LOCAL,&info);CHKERRQ(ierr); 1024e6dd01d4SJed Brown ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] off-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used);CHKERRQ(ierr); 1025b0a32e0cSBarry Smith ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 10261575c14dSBarry Smith ierr = PetscViewerASCIIPopSynchronized(viewer);CHKERRQ(ierr); 102707d81ca4SBarry Smith ierr = PetscViewerASCIIPrintf(viewer,"Information on VecScatter used in matrix-vector product: \n");CHKERRQ(ierr); 102857b952d6SSatish Balay ierr = VecScatterView(baij->Mvctx,viewer);CHKERRQ(ierr); 10293a40ed3dSBarry Smith PetscFunctionReturn(0); 1030fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_INFO) { 103177431f27SBarry Smith ierr = PetscViewerASCIIPrintf(viewer," block size is %D\n",bs);CHKERRQ(ierr); 10323a40ed3dSBarry Smith PetscFunctionReturn(0); 103304929863SHong Zhang } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) { 103404929863SHong Zhang PetscFunctionReturn(0); 103557b952d6SSatish Balay } 103657b952d6SSatish Balay } 103757b952d6SSatish Balay 10380f5bd95cSBarry Smith if (isdraw) { 1039b0a32e0cSBarry Smith PetscDraw draw; 1040ace3abfcSBarry Smith PetscBool isnull; 1041b0a32e0cSBarry Smith ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr); 104245f3bb6eSLisandro Dalcin ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); 104345f3bb6eSLisandro Dalcin if (isnull) PetscFunctionReturn(0); 104457b952d6SSatish Balay } 104557b952d6SSatish Balay 10467da1fb6eSBarry Smith { 104757b952d6SSatish Balay /* assemble the entire matrix onto first processor. */ 104857b952d6SSatish Balay Mat A; 104957b952d6SSatish Balay Mat_SeqBAIJ *Aloc; 1050d0f46423SBarry Smith PetscInt M = mat->rmap->N,N = mat->cmap->N,*ai,*aj,col,i,j,k,*rvals,mbs = baij->mbs; 10513eda8832SBarry Smith MatScalar *a; 10523e219373SBarry Smith const char *matname; 105357b952d6SSatish Balay 1054f204ca49SKris Buschelman /* Here we are creating a temporary matrix, so will assume MPIBAIJ is acceptable */ 1055f204ca49SKris Buschelman /* Perhaps this should be the type of mat? */ 1056ce94432eSBarry Smith ierr = MatCreate(PetscObjectComm((PetscObject)mat),&A);CHKERRQ(ierr); 105757b952d6SSatish Balay if (!rank) { 1058f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,M,N,M,N);CHKERRQ(ierr); 1059d64ed03dSBarry Smith } else { 1060f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,0,0,M,N);CHKERRQ(ierr); 106157b952d6SSatish Balay } 1062f204ca49SKris Buschelman ierr = MatSetType(A,MATMPIBAIJ);CHKERRQ(ierr); 10630298fd71SBarry Smith ierr = MatMPIBAIJSetPreallocation(A,mat->rmap->bs,0,NULL,0,NULL);CHKERRQ(ierr); 10642b82e772SSatish Balay ierr = MatSetOption(A,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_FALSE);CHKERRQ(ierr); 10653bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)A);CHKERRQ(ierr); 106657b952d6SSatish Balay 106757b952d6SSatish Balay /* copy over the A part */ 106857b952d6SSatish Balay Aloc = (Mat_SeqBAIJ*)baij->A->data; 106957b952d6SSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 1070785e854fSJed Brown ierr = PetscMalloc1(bs,&rvals);CHKERRQ(ierr); 107157b952d6SSatish Balay 107257b952d6SSatish Balay for (i=0; i<mbs; i++) { 1073899cda47SBarry Smith rvals[0] = bs*(baij->rstartbs + i); 107426fbe8dcSKarl Rupp for (j=1; j<bs; j++) rvals[j] = rvals[j-1] + 1; 107557b952d6SSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 1076899cda47SBarry Smith col = (baij->cstartbs+aj[j])*bs; 107757b952d6SSatish Balay for (k=0; k<bs; k++) { 107897e5c40aSBarry Smith ierr = MatSetValues_MPIBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 1079cee3aa6bSSatish Balay col++; a += bs; 108057b952d6SSatish Balay } 108157b952d6SSatish Balay } 108257b952d6SSatish Balay } 108357b952d6SSatish Balay /* copy over the B part */ 108457b952d6SSatish Balay Aloc = (Mat_SeqBAIJ*)baij->B->data; 108557b952d6SSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 108657b952d6SSatish Balay for (i=0; i<mbs; i++) { 1087899cda47SBarry Smith rvals[0] = bs*(baij->rstartbs + i); 108826fbe8dcSKarl Rupp for (j=1; j<bs; j++) rvals[j] = rvals[j-1] + 1; 108957b952d6SSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 109057b952d6SSatish Balay col = baij->garray[aj[j]]*bs; 109157b952d6SSatish Balay for (k=0; k<bs; k++) { 109297e5c40aSBarry Smith ierr = MatSetValues_MPIBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 1093cee3aa6bSSatish Balay col++; a += bs; 109457b952d6SSatish Balay } 109557b952d6SSatish Balay } 109657b952d6SSatish Balay } 1097606d414cSSatish Balay ierr = PetscFree(rvals);CHKERRQ(ierr); 10986d4a8577SBarry Smith ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 10996d4a8577SBarry Smith ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 110055843e3eSBarry Smith /* 110155843e3eSBarry Smith Everyone has to call to draw the matrix since the graphics waits are 1102b0a32e0cSBarry Smith synchronized across all processors that share the PetscDraw object 110355843e3eSBarry Smith */ 11043f08860eSBarry Smith ierr = PetscViewerGetSubViewer(viewer,PETSC_COMM_SELF,&sviewer);CHKERRQ(ierr); 1105ade3a672SBarry Smith ierr = PetscObjectGetName((PetscObject)mat,&matname);CHKERRQ(ierr); 11063e219373SBarry Smith if (!rank) { 1107ade3a672SBarry Smith ierr = PetscObjectSetName((PetscObject)((Mat_MPIBAIJ*)(A->data))->A,matname);CHKERRQ(ierr); 11087da1fb6eSBarry Smith ierr = MatView_SeqBAIJ(((Mat_MPIBAIJ*)(A->data))->A,sviewer);CHKERRQ(ierr); 110957b952d6SSatish Balay } 11103f08860eSBarry Smith ierr = PetscViewerRestoreSubViewer(viewer,PETSC_COMM_SELF,&sviewer);CHKERRQ(ierr); 11111575c14dSBarry Smith ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 11126bf464f9SBarry Smith ierr = MatDestroy(&A);CHKERRQ(ierr); 111357b952d6SSatish Balay } 11143a40ed3dSBarry Smith PetscFunctionReturn(0); 111557b952d6SSatish Balay } 111657b952d6SSatish Balay 1117660746e0SBarry Smith static PetscErrorCode MatView_MPIBAIJ_Binary(Mat mat,PetscViewer viewer) 1118660746e0SBarry Smith { 1119660746e0SBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)mat->data; 1120660746e0SBarry Smith Mat_SeqBAIJ *A = (Mat_SeqBAIJ*)a->A->data; 1121660746e0SBarry Smith Mat_SeqBAIJ *B = (Mat_SeqBAIJ*)a->B->data; 1122660746e0SBarry Smith PetscErrorCode ierr; 11235f48b12bSBarry Smith PetscInt i,*row_lens,*crow_lens,bs = mat->rmap->bs,j,k,bs2=a->bs2,header[4],nz,rlen; 1124e96a6426SSatish Balay PetscInt *range=0,nzmax,*column_indices,cnt,col,*garray = a->garray,cstart = mat->cmap->rstart/bs,len,pcnt,l,ll; 1125660746e0SBarry Smith int fd; 1126660746e0SBarry Smith PetscScalar *column_values; 1127660746e0SBarry Smith FILE *file; 1128660746e0SBarry Smith PetscMPIInt rank,size,tag = ((PetscObject)viewer)->tag; 1129638eb2ebSBarry Smith PetscInt message_count,flowcontrolcount; 1130660746e0SBarry Smith 1131660746e0SBarry Smith PetscFunctionBegin; 1132ce94432eSBarry Smith ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)mat),&rank);CHKERRQ(ierr); 1133ce94432eSBarry Smith ierr = MPI_Comm_size(PetscObjectComm((PetscObject)mat),&size);CHKERRQ(ierr); 1134660746e0SBarry Smith nz = bs2*(A->nz + B->nz); 1135660746e0SBarry Smith rlen = mat->rmap->n; 11365872f025SBarry Smith ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr); 1137660746e0SBarry Smith if (!rank) { 1138660746e0SBarry Smith header[0] = MAT_FILE_CLASSID; 1139660746e0SBarry Smith header[1] = mat->rmap->N; 1140660746e0SBarry Smith header[2] = mat->cmap->N; 114126fbe8dcSKarl Rupp 1142ce94432eSBarry Smith ierr = MPI_Reduce(&nz,&header[3],1,MPIU_INT,MPI_SUM,0,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 1143660746e0SBarry Smith ierr = PetscBinaryWrite(fd,header,4,PETSC_INT,PETSC_TRUE);CHKERRQ(ierr); 1144660746e0SBarry Smith /* get largest number of rows any processor has */ 1145660746e0SBarry Smith range = mat->rmap->range; 1146660746e0SBarry Smith for (i=1; i<size; i++) { 1147660746e0SBarry Smith rlen = PetscMax(rlen,range[i+1] - range[i]); 1148660746e0SBarry Smith } 1149660746e0SBarry Smith } else { 1150ce94432eSBarry Smith ierr = MPI_Reduce(&nz,0,1,MPIU_INT,MPI_SUM,0,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 1151660746e0SBarry Smith } 1152660746e0SBarry Smith 1153854ce69bSBarry Smith ierr = PetscMalloc1(rlen/bs,&crow_lens);CHKERRQ(ierr); 1154660746e0SBarry Smith /* compute lengths of each row */ 1155660746e0SBarry Smith for (i=0; i<a->mbs; i++) { 1156660746e0SBarry Smith crow_lens[i] = A->i[i+1] - A->i[i] + B->i[i+1] - B->i[i]; 1157660746e0SBarry Smith } 1158660746e0SBarry Smith /* store the row lengths to the file */ 1159638eb2ebSBarry Smith ierr = PetscViewerFlowControlStart(viewer,&message_count,&flowcontrolcount);CHKERRQ(ierr); 1160660746e0SBarry Smith if (!rank) { 1161660746e0SBarry Smith MPI_Status status; 1162785e854fSJed Brown ierr = PetscMalloc1(rlen,&row_lens);CHKERRQ(ierr); 1163660746e0SBarry Smith rlen = (range[1] - range[0])/bs; 1164660746e0SBarry Smith for (i=0; i<rlen; i++) { 1165660746e0SBarry Smith for (j=0; j<bs; j++) { 1166660746e0SBarry Smith row_lens[i*bs+j] = bs*crow_lens[i]; 1167660746e0SBarry Smith } 1168660746e0SBarry Smith } 1169660746e0SBarry Smith ierr = PetscBinaryWrite(fd,row_lens,bs*rlen,PETSC_INT,PETSC_TRUE);CHKERRQ(ierr); 1170660746e0SBarry Smith for (i=1; i<size; i++) { 1171660746e0SBarry Smith rlen = (range[i+1] - range[i])/bs; 1172639ff905SBarry Smith ierr = PetscViewerFlowControlStepMaster(viewer,i,&message_count,flowcontrolcount);CHKERRQ(ierr); 1173ce94432eSBarry Smith ierr = MPI_Recv(crow_lens,rlen,MPIU_INT,i,tag,PetscObjectComm((PetscObject)mat),&status);CHKERRQ(ierr); 1174660746e0SBarry Smith for (k=0; k<rlen; k++) { 1175660746e0SBarry Smith for (j=0; j<bs; j++) { 1176660746e0SBarry Smith row_lens[k*bs+j] = bs*crow_lens[k]; 1177660746e0SBarry Smith } 1178660746e0SBarry Smith } 1179660746e0SBarry Smith ierr = PetscBinaryWrite(fd,row_lens,bs*rlen,PETSC_INT,PETSC_TRUE);CHKERRQ(ierr); 1180660746e0SBarry Smith } 1181639ff905SBarry Smith ierr = PetscViewerFlowControlEndMaster(viewer,&message_count);CHKERRQ(ierr); 1182660746e0SBarry Smith ierr = PetscFree(row_lens);CHKERRQ(ierr); 1183660746e0SBarry Smith } else { 1184639ff905SBarry Smith ierr = PetscViewerFlowControlStepWorker(viewer,rank,&message_count);CHKERRQ(ierr); 1185ce94432eSBarry Smith ierr = MPI_Send(crow_lens,mat->rmap->n/bs,MPIU_INT,0,tag,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 1186639ff905SBarry Smith ierr = PetscViewerFlowControlEndWorker(viewer,&message_count);CHKERRQ(ierr); 1187660746e0SBarry Smith } 1188660746e0SBarry Smith ierr = PetscFree(crow_lens);CHKERRQ(ierr); 1189660746e0SBarry Smith 1190660746e0SBarry Smith /* load up the local column indices. Include for all rows not just one for each block row since process 0 does not have the 1191660746e0SBarry Smith information needed to make it for each row from a block row. This does require more communication but still not more than 1192660746e0SBarry Smith the communication needed for the nonzero values */ 1193660746e0SBarry Smith nzmax = nz; /* space a largest processor needs */ 1194ce94432eSBarry Smith ierr = MPI_Reduce(&nz,&nzmax,1,MPIU_INT,MPI_MAX,0,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 1195785e854fSJed Brown ierr = PetscMalloc1(nzmax,&column_indices);CHKERRQ(ierr); 1196660746e0SBarry Smith cnt = 0; 1197660746e0SBarry Smith for (i=0; i<a->mbs; i++) { 1198660746e0SBarry Smith pcnt = cnt; 1199660746e0SBarry Smith for (j=B->i[i]; j<B->i[i+1]; j++) { 1200660746e0SBarry Smith if ((col = garray[B->j[j]]) > cstart) break; 1201660746e0SBarry Smith for (l=0; l<bs; l++) { 1202660746e0SBarry Smith column_indices[cnt++] = bs*col+l; 1203660746e0SBarry Smith } 1204660746e0SBarry Smith } 1205660746e0SBarry Smith for (k=A->i[i]; k<A->i[i+1]; k++) { 1206660746e0SBarry Smith for (l=0; l<bs; l++) { 1207660746e0SBarry Smith column_indices[cnt++] = bs*(A->j[k] + cstart)+l; 1208660746e0SBarry Smith } 1209660746e0SBarry Smith } 1210660746e0SBarry Smith for (; j<B->i[i+1]; j++) { 1211660746e0SBarry Smith for (l=0; l<bs; l++) { 1212660746e0SBarry Smith column_indices[cnt++] = bs*garray[B->j[j]]+l; 1213660746e0SBarry Smith } 1214660746e0SBarry Smith } 1215660746e0SBarry Smith len = cnt - pcnt; 1216660746e0SBarry Smith for (k=1; k<bs; k++) { 1217660746e0SBarry Smith ierr = PetscMemcpy(&column_indices[cnt],&column_indices[pcnt],len*sizeof(PetscInt));CHKERRQ(ierr); 1218660746e0SBarry Smith cnt += len; 1219660746e0SBarry Smith } 1220660746e0SBarry Smith } 1221660746e0SBarry Smith if (cnt != nz) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_LIB,"Internal PETSc error: cnt = %D nz = %D",cnt,nz); 1222660746e0SBarry Smith 1223660746e0SBarry Smith /* store the columns to the file */ 1224638eb2ebSBarry Smith ierr = PetscViewerFlowControlStart(viewer,&message_count,&flowcontrolcount);CHKERRQ(ierr); 1225660746e0SBarry Smith if (!rank) { 1226660746e0SBarry Smith MPI_Status status; 1227660746e0SBarry Smith ierr = PetscBinaryWrite(fd,column_indices,nz,PETSC_INT,PETSC_TRUE);CHKERRQ(ierr); 1228660746e0SBarry Smith for (i=1; i<size; i++) { 1229639ff905SBarry Smith ierr = PetscViewerFlowControlStepMaster(viewer,i,&message_count,flowcontrolcount);CHKERRQ(ierr); 1230ce94432eSBarry Smith ierr = MPI_Recv(&cnt,1,MPIU_INT,i,tag,PetscObjectComm((PetscObject)mat),&status);CHKERRQ(ierr); 1231ce94432eSBarry Smith ierr = MPI_Recv(column_indices,cnt,MPIU_INT,i,tag,PetscObjectComm((PetscObject)mat),&status);CHKERRQ(ierr); 1232660746e0SBarry Smith ierr = PetscBinaryWrite(fd,column_indices,cnt,PETSC_INT,PETSC_TRUE);CHKERRQ(ierr); 1233660746e0SBarry Smith } 1234639ff905SBarry Smith ierr = PetscViewerFlowControlEndMaster(viewer,&message_count);CHKERRQ(ierr); 1235660746e0SBarry Smith } else { 1236639ff905SBarry Smith ierr = PetscViewerFlowControlStepWorker(viewer,rank,&message_count);CHKERRQ(ierr); 1237ce94432eSBarry Smith ierr = MPI_Send(&cnt,1,MPIU_INT,0,tag,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 1238ce94432eSBarry Smith ierr = MPI_Send(column_indices,cnt,MPIU_INT,0,tag,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 1239639ff905SBarry Smith ierr = PetscViewerFlowControlEndWorker(viewer,&message_count);CHKERRQ(ierr); 1240660746e0SBarry Smith } 1241660746e0SBarry Smith ierr = PetscFree(column_indices);CHKERRQ(ierr); 1242660746e0SBarry Smith 1243660746e0SBarry Smith /* load up the numerical values */ 1244785e854fSJed Brown ierr = PetscMalloc1(nzmax,&column_values);CHKERRQ(ierr); 1245660746e0SBarry Smith cnt = 0; 1246660746e0SBarry Smith for (i=0; i<a->mbs; i++) { 1247660746e0SBarry Smith rlen = bs*(B->i[i+1] - B->i[i] + A->i[i+1] - A->i[i]); 1248660746e0SBarry Smith for (j=B->i[i]; j<B->i[i+1]; j++) { 1249660746e0SBarry Smith if (garray[B->j[j]] > cstart) break; 1250660746e0SBarry Smith for (l=0; l<bs; l++) { 1251660746e0SBarry Smith for (ll=0; ll<bs; ll++) { 1252660746e0SBarry Smith column_values[cnt + l*rlen + ll] = B->a[bs2*j+l+bs*ll]; 1253660746e0SBarry Smith } 1254660746e0SBarry Smith } 1255660746e0SBarry Smith cnt += bs; 1256660746e0SBarry Smith } 1257660746e0SBarry Smith for (k=A->i[i]; k<A->i[i+1]; k++) { 1258660746e0SBarry Smith for (l=0; l<bs; l++) { 1259660746e0SBarry Smith for (ll=0; ll<bs; ll++) { 1260660746e0SBarry Smith column_values[cnt + l*rlen + ll] = A->a[bs2*k+l+bs*ll]; 1261660746e0SBarry Smith } 1262660746e0SBarry Smith } 1263660746e0SBarry Smith cnt += bs; 1264660746e0SBarry Smith } 1265660746e0SBarry Smith for (; j<B->i[i+1]; j++) { 1266660746e0SBarry Smith for (l=0; l<bs; l++) { 1267660746e0SBarry Smith for (ll=0; ll<bs; ll++) { 1268660746e0SBarry Smith column_values[cnt + l*rlen + ll] = B->a[bs2*j+l+bs*ll]; 1269660746e0SBarry Smith } 1270660746e0SBarry Smith } 1271660746e0SBarry Smith cnt += bs; 1272660746e0SBarry Smith } 1273660746e0SBarry Smith cnt += (bs-1)*rlen; 1274660746e0SBarry Smith } 1275660746e0SBarry Smith if (cnt != nz) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Internal PETSc error: cnt = %D nz = %D",cnt,nz); 1276660746e0SBarry Smith 1277660746e0SBarry Smith /* store the column values to the file */ 1278638eb2ebSBarry Smith ierr = PetscViewerFlowControlStart(viewer,&message_count,&flowcontrolcount);CHKERRQ(ierr); 1279660746e0SBarry Smith if (!rank) { 1280660746e0SBarry Smith MPI_Status status; 1281660746e0SBarry Smith ierr = PetscBinaryWrite(fd,column_values,nz,PETSC_SCALAR,PETSC_TRUE);CHKERRQ(ierr); 1282660746e0SBarry Smith for (i=1; i<size; i++) { 1283639ff905SBarry Smith ierr = PetscViewerFlowControlStepMaster(viewer,i,&message_count,flowcontrolcount);CHKERRQ(ierr); 1284ce94432eSBarry Smith ierr = MPI_Recv(&cnt,1,MPIU_INT,i,tag,PetscObjectComm((PetscObject)mat),&status);CHKERRQ(ierr); 1285ce94432eSBarry Smith ierr = MPI_Recv(column_values,cnt,MPIU_SCALAR,i,tag,PetscObjectComm((PetscObject)mat),&status);CHKERRQ(ierr); 1286660746e0SBarry Smith ierr = PetscBinaryWrite(fd,column_values,cnt,PETSC_SCALAR,PETSC_TRUE);CHKERRQ(ierr); 1287660746e0SBarry Smith } 1288639ff905SBarry Smith ierr = PetscViewerFlowControlEndMaster(viewer,&message_count);CHKERRQ(ierr); 1289660746e0SBarry Smith } else { 1290639ff905SBarry Smith ierr = PetscViewerFlowControlStepWorker(viewer,rank,&message_count);CHKERRQ(ierr); 1291ce94432eSBarry Smith ierr = MPI_Send(&nz,1,MPIU_INT,0,tag,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 1292ce94432eSBarry Smith ierr = MPI_Send(column_values,nz,MPIU_SCALAR,0,tag,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 1293639ff905SBarry Smith ierr = PetscViewerFlowControlEndWorker(viewer,&message_count);CHKERRQ(ierr); 1294660746e0SBarry Smith } 1295660746e0SBarry Smith ierr = PetscFree(column_values);CHKERRQ(ierr); 1296660746e0SBarry Smith 1297660746e0SBarry Smith ierr = PetscViewerBinaryGetInfoPointer(viewer,&file);CHKERRQ(ierr); 1298660746e0SBarry Smith if (file) { 1299660746e0SBarry Smith fprintf(file,"-matload_block_size %d\n",(int)mat->rmap->bs); 1300660746e0SBarry Smith } 1301660746e0SBarry Smith PetscFunctionReturn(0); 1302660746e0SBarry Smith } 1303660746e0SBarry Smith 1304dfbe8321SBarry Smith PetscErrorCode MatView_MPIBAIJ(Mat mat,PetscViewer viewer) 130557b952d6SSatish Balay { 1306dfbe8321SBarry Smith PetscErrorCode ierr; 1307ace3abfcSBarry Smith PetscBool iascii,isdraw,issocket,isbinary; 130857b952d6SSatish Balay 1309d64ed03dSBarry Smith PetscFunctionBegin; 1310251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr); 1311251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr); 1312251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERSOCKET,&issocket);CHKERRQ(ierr); 1313251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary);CHKERRQ(ierr); 1314660746e0SBarry Smith if (iascii || isdraw || issocket) { 13157b2a1423SBarry Smith ierr = MatView_MPIBAIJ_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr); 1316660746e0SBarry Smith } else if (isbinary) { 1317660746e0SBarry Smith ierr = MatView_MPIBAIJ_Binary(mat,viewer);CHKERRQ(ierr); 131857b952d6SSatish Balay } 13193a40ed3dSBarry Smith PetscFunctionReturn(0); 132057b952d6SSatish Balay } 132157b952d6SSatish Balay 1322dfbe8321SBarry Smith PetscErrorCode MatDestroy_MPIBAIJ(Mat mat) 132379bdfe76SSatish Balay { 132479bdfe76SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 1325dfbe8321SBarry Smith PetscErrorCode ierr; 132679bdfe76SSatish Balay 1327d64ed03dSBarry Smith PetscFunctionBegin; 1328aa482453SBarry Smith #if defined(PETSC_USE_LOG) 1329d0f46423SBarry Smith PetscLogObjectState((PetscObject)mat,"Rows=%D,Cols=%D",mat->rmap->N,mat->cmap->N); 133079bdfe76SSatish Balay #endif 13318798bf22SSatish Balay ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr); 13328798bf22SSatish Balay ierr = MatStashDestroy_Private(&mat->bstash);CHKERRQ(ierr); 13336bf464f9SBarry Smith ierr = MatDestroy(&baij->A);CHKERRQ(ierr); 13346bf464f9SBarry Smith ierr = MatDestroy(&baij->B);CHKERRQ(ierr); 1335aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 13366bc0bbbfSBarry Smith ierr = PetscTableDestroy(&baij->colmap);CHKERRQ(ierr); 133748e59246SSatish Balay #else 133805b42c5fSBarry Smith ierr = PetscFree(baij->colmap);CHKERRQ(ierr); 133948e59246SSatish Balay #endif 134005b42c5fSBarry Smith ierr = PetscFree(baij->garray);CHKERRQ(ierr); 13416bf464f9SBarry Smith ierr = VecDestroy(&baij->lvec);CHKERRQ(ierr); 13426bf464f9SBarry Smith ierr = VecScatterDestroy(&baij->Mvctx);CHKERRQ(ierr); 1343fca92195SBarry Smith ierr = PetscFree2(baij->rowvalues,baij->rowindices);CHKERRQ(ierr); 134405b42c5fSBarry Smith ierr = PetscFree(baij->barray);CHKERRQ(ierr); 1345fca92195SBarry Smith ierr = PetscFree2(baij->hd,baij->ht);CHKERRQ(ierr); 1346899cda47SBarry Smith ierr = PetscFree(baij->rangebs);CHKERRQ(ierr); 1347bf0cc555SLisandro Dalcin ierr = PetscFree(mat->data);CHKERRQ(ierr); 1348901853e0SKris Buschelman 1349dbd8c25aSHong Zhang ierr = PetscObjectChangeTypeName((PetscObject)mat,0);CHKERRQ(ierr); 1350bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatStoreValues_C",NULL);CHKERRQ(ierr); 1351bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatRetrieveValues_C",NULL);CHKERRQ(ierr); 1352bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPIBAIJSetPreallocation_C",NULL);CHKERRQ(ierr); 1353bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPIBAIJSetPreallocationCSR_C",NULL);CHKERRQ(ierr); 1354bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDiagonalScaleLocal_C",NULL);CHKERRQ(ierr); 1355bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatSetHashTableFactor_C",NULL);CHKERRQ(ierr); 1356bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpibaij_mpisbaij_C",NULL);CHKERRQ(ierr); 1357bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpibaij_mpibstrm_C",NULL);CHKERRQ(ierr); 13587ea3e4caSstefano_zampini #if defined(PETSC_HAVE_HYPRE) 13597ea3e4caSstefano_zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpibaij_hypre_C",NULL);CHKERRQ(ierr); 13607ea3e4caSstefano_zampini #endif 1361c9225affSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpibaij_is_C",NULL);CHKERRQ(ierr); 136275d48cdbSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatPtAP_is_mpibaij_C",NULL);CHKERRQ(ierr); 13633a40ed3dSBarry Smith PetscFunctionReturn(0); 136479bdfe76SSatish Balay } 136579bdfe76SSatish Balay 1366dfbe8321SBarry Smith PetscErrorCode MatMult_MPIBAIJ(Mat A,Vec xx,Vec yy) 1367cee3aa6bSSatish Balay { 1368cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1369dfbe8321SBarry Smith PetscErrorCode ierr; 1370b24ad042SBarry Smith PetscInt nt; 1371cee3aa6bSSatish Balay 1372d64ed03dSBarry Smith PetscFunctionBegin; 1373e1311b90SBarry Smith ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr); 1374e7e72b3dSBarry Smith if (nt != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx"); 1375e1311b90SBarry Smith ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr); 1376e7e72b3dSBarry Smith if (nt != A->rmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible parition of A and yy"); 1377ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1378f830108cSBarry Smith ierr = (*a->A->ops->mult)(a->A,xx,yy);CHKERRQ(ierr); 1379ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1380f830108cSBarry Smith ierr = (*a->B->ops->multadd)(a->B,a->lvec,yy,yy);CHKERRQ(ierr); 13813a40ed3dSBarry Smith PetscFunctionReturn(0); 1382cee3aa6bSSatish Balay } 1383cee3aa6bSSatish Balay 1384dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPIBAIJ(Mat A,Vec xx,Vec yy,Vec zz) 1385cee3aa6bSSatish Balay { 1386cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1387dfbe8321SBarry Smith PetscErrorCode ierr; 1388d64ed03dSBarry Smith 1389d64ed03dSBarry Smith PetscFunctionBegin; 1390ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1391f830108cSBarry Smith ierr = (*a->A->ops->multadd)(a->A,xx,yy,zz);CHKERRQ(ierr); 1392ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1393f830108cSBarry Smith ierr = (*a->B->ops->multadd)(a->B,a->lvec,zz,zz);CHKERRQ(ierr); 13943a40ed3dSBarry Smith PetscFunctionReturn(0); 1395cee3aa6bSSatish Balay } 1396cee3aa6bSSatish Balay 1397dfbe8321SBarry Smith PetscErrorCode MatMultTranspose_MPIBAIJ(Mat A,Vec xx,Vec yy) 1398cee3aa6bSSatish Balay { 1399cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1400dfbe8321SBarry Smith PetscErrorCode ierr; 1401ace3abfcSBarry Smith PetscBool merged; 1402cee3aa6bSSatish Balay 1403d64ed03dSBarry Smith PetscFunctionBegin; 1404a5ff213dSBarry Smith ierr = VecScatterGetMerged(a->Mvctx,&merged);CHKERRQ(ierr); 1405cee3aa6bSSatish Balay /* do nondiagonal part */ 14067c922b88SBarry Smith ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr); 1407a5ff213dSBarry Smith if (!merged) { 1408cee3aa6bSSatish Balay /* send it on its way */ 1409ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 1410cee3aa6bSSatish Balay /* do local part */ 14117c922b88SBarry Smith ierr = (*a->A->ops->multtranspose)(a->A,xx,yy);CHKERRQ(ierr); 1412cee3aa6bSSatish Balay /* receive remote parts: note this assumes the values are not actually */ 1413a5ff213dSBarry Smith /* inserted in yy until the next line */ 1414ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 1415a5ff213dSBarry Smith } else { 1416a5ff213dSBarry Smith /* do local part */ 1417a5ff213dSBarry Smith ierr = (*a->A->ops->multtranspose)(a->A,xx,yy);CHKERRQ(ierr); 1418a5ff213dSBarry Smith /* send it on its way */ 1419ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 1420a5ff213dSBarry Smith /* values actually were received in the Begin() but we need to call this nop */ 1421ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 1422a5ff213dSBarry Smith } 14233a40ed3dSBarry Smith PetscFunctionReturn(0); 1424cee3aa6bSSatish Balay } 1425cee3aa6bSSatish Balay 1426dfbe8321SBarry Smith PetscErrorCode MatMultTransposeAdd_MPIBAIJ(Mat A,Vec xx,Vec yy,Vec zz) 1427cee3aa6bSSatish Balay { 1428cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1429dfbe8321SBarry Smith PetscErrorCode ierr; 1430cee3aa6bSSatish Balay 1431d64ed03dSBarry Smith PetscFunctionBegin; 1432cee3aa6bSSatish Balay /* do nondiagonal part */ 14337c922b88SBarry Smith ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr); 1434cee3aa6bSSatish Balay /* send it on its way */ 1435ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 1436cee3aa6bSSatish Balay /* do local part */ 14377c922b88SBarry Smith ierr = (*a->A->ops->multtransposeadd)(a->A,xx,yy,zz);CHKERRQ(ierr); 1438cee3aa6bSSatish Balay /* receive remote parts: note this assumes the values are not actually */ 1439cee3aa6bSSatish Balay /* inserted in yy until the next line, which is true for my implementation*/ 1440cee3aa6bSSatish Balay /* but is not perhaps always true. */ 1441ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 14423a40ed3dSBarry Smith PetscFunctionReturn(0); 1443cee3aa6bSSatish Balay } 1444cee3aa6bSSatish Balay 1445cee3aa6bSSatish Balay /* 1446cee3aa6bSSatish Balay This only works correctly for square matrices where the subblock A->A is the 1447cee3aa6bSSatish Balay diagonal block 1448cee3aa6bSSatish Balay */ 1449dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_MPIBAIJ(Mat A,Vec v) 1450cee3aa6bSSatish Balay { 1451cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1452dfbe8321SBarry Smith PetscErrorCode ierr; 1453d64ed03dSBarry Smith 1454d64ed03dSBarry Smith PetscFunctionBegin; 1455e32f2f54SBarry Smith if (A->rmap->N != A->cmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block"); 14563a40ed3dSBarry Smith ierr = MatGetDiagonal(a->A,v);CHKERRQ(ierr); 14573a40ed3dSBarry Smith PetscFunctionReturn(0); 1458cee3aa6bSSatish Balay } 1459cee3aa6bSSatish Balay 1460f4df32b1SMatthew Knepley PetscErrorCode MatScale_MPIBAIJ(Mat A,PetscScalar aa) 1461cee3aa6bSSatish Balay { 1462cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1463dfbe8321SBarry Smith PetscErrorCode ierr; 1464d64ed03dSBarry Smith 1465d64ed03dSBarry Smith PetscFunctionBegin; 1466f4df32b1SMatthew Knepley ierr = MatScale(a->A,aa);CHKERRQ(ierr); 1467f4df32b1SMatthew Knepley ierr = MatScale(a->B,aa);CHKERRQ(ierr); 14683a40ed3dSBarry Smith PetscFunctionReturn(0); 1469cee3aa6bSSatish Balay } 1470026e39d0SSatish Balay 1471b24ad042SBarry Smith PetscErrorCode MatGetRow_MPIBAIJ(Mat matin,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 1472acdf5bf4SSatish Balay { 1473acdf5bf4SSatish Balay Mat_MPIBAIJ *mat = (Mat_MPIBAIJ*)matin->data; 147487828ca2SBarry Smith PetscScalar *vworkA,*vworkB,**pvA,**pvB,*v_p; 14756849ba73SBarry Smith PetscErrorCode ierr; 1476d0f46423SBarry Smith PetscInt bs = matin->rmap->bs,bs2 = mat->bs2,i,*cworkA,*cworkB,**pcA,**pcB; 1477d0f46423SBarry Smith PetscInt nztot,nzA,nzB,lrow,brstart = matin->rmap->rstart,brend = matin->rmap->rend; 1478899cda47SBarry Smith PetscInt *cmap,*idx_p,cstart = mat->cstartbs; 1479acdf5bf4SSatish Balay 1480d64ed03dSBarry Smith PetscFunctionBegin; 1481e7e72b3dSBarry Smith if (row < brstart || row >= brend) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local rows"); 1482e32f2f54SBarry Smith if (mat->getrowactive) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Already active"); 1483acdf5bf4SSatish Balay mat->getrowactive = PETSC_TRUE; 1484acdf5bf4SSatish Balay 1485acdf5bf4SSatish Balay if (!mat->rowvalues && (idx || v)) { 1486acdf5bf4SSatish Balay /* 1487acdf5bf4SSatish Balay allocate enough space to hold information from the longest row. 1488acdf5bf4SSatish Balay */ 1489acdf5bf4SSatish Balay Mat_SeqBAIJ *Aa = (Mat_SeqBAIJ*)mat->A->data,*Ba = (Mat_SeqBAIJ*)mat->B->data; 1490b24ad042SBarry Smith PetscInt max = 1,mbs = mat->mbs,tmp; 1491bd16c2feSSatish Balay for (i=0; i<mbs; i++) { 1492acdf5bf4SSatish Balay tmp = Aa->i[i+1] - Aa->i[i] + Ba->i[i+1] - Ba->i[i]; 149326fbe8dcSKarl Rupp if (max < tmp) max = tmp; 1494acdf5bf4SSatish Balay } 1495dcca6d9dSJed Brown ierr = PetscMalloc2(max*bs2,&mat->rowvalues,max*bs2,&mat->rowindices);CHKERRQ(ierr); 1496acdf5bf4SSatish Balay } 1497d9d09a02SSatish Balay lrow = row - brstart; 1498acdf5bf4SSatish Balay 1499acdf5bf4SSatish Balay pvA = &vworkA; pcA = &cworkA; pvB = &vworkB; pcB = &cworkB; 1500acdf5bf4SSatish Balay if (!v) {pvA = 0; pvB = 0;} 1501acdf5bf4SSatish Balay if (!idx) {pcA = 0; if (!v) pcB = 0;} 1502f830108cSBarry Smith ierr = (*mat->A->ops->getrow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr); 1503f830108cSBarry Smith ierr = (*mat->B->ops->getrow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr); 1504acdf5bf4SSatish Balay nztot = nzA + nzB; 1505acdf5bf4SSatish Balay 1506acdf5bf4SSatish Balay cmap = mat->garray; 1507acdf5bf4SSatish Balay if (v || idx) { 1508acdf5bf4SSatish Balay if (nztot) { 1509acdf5bf4SSatish Balay /* Sort by increasing column numbers, assuming A and B already sorted */ 1510b24ad042SBarry Smith PetscInt imark = -1; 1511acdf5bf4SSatish Balay if (v) { 1512acdf5bf4SSatish Balay *v = v_p = mat->rowvalues; 1513acdf5bf4SSatish Balay for (i=0; i<nzB; i++) { 1514d9d09a02SSatish Balay if (cmap[cworkB[i]/bs] < cstart) v_p[i] = vworkB[i]; 1515acdf5bf4SSatish Balay else break; 1516acdf5bf4SSatish Balay } 1517acdf5bf4SSatish Balay imark = i; 1518acdf5bf4SSatish Balay for (i=0; i<nzA; i++) v_p[imark+i] = vworkA[i]; 1519acdf5bf4SSatish Balay for (i=imark; i<nzB; i++) v_p[nzA+i] = vworkB[i]; 1520acdf5bf4SSatish Balay } 1521acdf5bf4SSatish Balay if (idx) { 1522acdf5bf4SSatish Balay *idx = idx_p = mat->rowindices; 1523acdf5bf4SSatish Balay if (imark > -1) { 1524acdf5bf4SSatish Balay for (i=0; i<imark; i++) { 1525bd16c2feSSatish Balay idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs; 1526acdf5bf4SSatish Balay } 1527acdf5bf4SSatish Balay } else { 1528acdf5bf4SSatish Balay for (i=0; i<nzB; i++) { 152926fbe8dcSKarl Rupp if (cmap[cworkB[i]/bs] < cstart) idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs; 1530acdf5bf4SSatish Balay else break; 1531acdf5bf4SSatish Balay } 1532acdf5bf4SSatish Balay imark = i; 1533acdf5bf4SSatish Balay } 1534d9d09a02SSatish Balay for (i=0; i<nzA; i++) idx_p[imark+i] = cstart*bs + cworkA[i]; 1535d9d09a02SSatish Balay for (i=imark; i<nzB; i++) idx_p[nzA+i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ; 1536acdf5bf4SSatish Balay } 1537d64ed03dSBarry Smith } else { 1538d212a18eSSatish Balay if (idx) *idx = 0; 1539d212a18eSSatish Balay if (v) *v = 0; 1540d212a18eSSatish Balay } 1541acdf5bf4SSatish Balay } 1542acdf5bf4SSatish Balay *nz = nztot; 1543f830108cSBarry Smith ierr = (*mat->A->ops->restorerow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr); 1544f830108cSBarry Smith ierr = (*mat->B->ops->restorerow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr); 15453a40ed3dSBarry Smith PetscFunctionReturn(0); 1546acdf5bf4SSatish Balay } 1547acdf5bf4SSatish Balay 1548b24ad042SBarry Smith PetscErrorCode MatRestoreRow_MPIBAIJ(Mat mat,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 1549acdf5bf4SSatish Balay { 1550acdf5bf4SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 1551d64ed03dSBarry Smith 1552d64ed03dSBarry Smith PetscFunctionBegin; 1553e7e72b3dSBarry Smith if (!baij->getrowactive) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"MatGetRow not called"); 1554acdf5bf4SSatish Balay baij->getrowactive = PETSC_FALSE; 15553a40ed3dSBarry Smith PetscFunctionReturn(0); 1556acdf5bf4SSatish Balay } 1557acdf5bf4SSatish Balay 1558dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_MPIBAIJ(Mat A) 155958667388SSatish Balay { 156058667388SSatish Balay Mat_MPIBAIJ *l = (Mat_MPIBAIJ*)A->data; 1561dfbe8321SBarry Smith PetscErrorCode ierr; 1562d64ed03dSBarry Smith 1563d64ed03dSBarry Smith PetscFunctionBegin; 156458667388SSatish Balay ierr = MatZeroEntries(l->A);CHKERRQ(ierr); 156558667388SSatish Balay ierr = MatZeroEntries(l->B);CHKERRQ(ierr); 15663a40ed3dSBarry Smith PetscFunctionReturn(0); 156758667388SSatish Balay } 15680ac07820SSatish Balay 1569dfbe8321SBarry Smith PetscErrorCode MatGetInfo_MPIBAIJ(Mat matin,MatInfoType flag,MatInfo *info) 15700ac07820SSatish Balay { 15714e220ebcSLois Curfman McInnes Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)matin->data; 15724e220ebcSLois Curfman McInnes Mat A = a->A,B = a->B; 1573dfbe8321SBarry Smith PetscErrorCode ierr; 1574329f5518SBarry Smith PetscReal isend[5],irecv[5]; 15750ac07820SSatish Balay 1576d64ed03dSBarry Smith PetscFunctionBegin; 1577d0f46423SBarry Smith info->block_size = (PetscReal)matin->rmap->bs; 157826fbe8dcSKarl Rupp 15794e220ebcSLois Curfman McInnes ierr = MatGetInfo(A,MAT_LOCAL,info);CHKERRQ(ierr); 158026fbe8dcSKarl Rupp 15810e4b21beSBarry Smith isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded; 1582de87f314SBarry Smith isend[3] = info->memory; isend[4] = info->mallocs; 158326fbe8dcSKarl Rupp 15844e220ebcSLois Curfman McInnes ierr = MatGetInfo(B,MAT_LOCAL,info);CHKERRQ(ierr); 158526fbe8dcSKarl Rupp 15860e4b21beSBarry Smith isend[0] += info->nz_used; isend[1] += info->nz_allocated; isend[2] += info->nz_unneeded; 1587de87f314SBarry Smith isend[3] += info->memory; isend[4] += info->mallocs; 158826fbe8dcSKarl Rupp 15890ac07820SSatish Balay if (flag == MAT_LOCAL) { 15904e220ebcSLois Curfman McInnes info->nz_used = isend[0]; 15914e220ebcSLois Curfman McInnes info->nz_allocated = isend[1]; 15924e220ebcSLois Curfman McInnes info->nz_unneeded = isend[2]; 15934e220ebcSLois Curfman McInnes info->memory = isend[3]; 15944e220ebcSLois Curfman McInnes info->mallocs = isend[4]; 15950ac07820SSatish Balay } else if (flag == MAT_GLOBAL_MAX) { 1596b2566f29SBarry Smith ierr = MPIU_Allreduce(isend,irecv,5,MPIU_REAL,MPIU_MAX,PetscObjectComm((PetscObject)matin));CHKERRQ(ierr); 159726fbe8dcSKarl Rupp 15984e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 15994e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 16004e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 16014e220ebcSLois Curfman McInnes info->memory = irecv[3]; 16024e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 16030ac07820SSatish Balay } else if (flag == MAT_GLOBAL_SUM) { 1604b2566f29SBarry Smith ierr = MPIU_Allreduce(isend,irecv,5,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)matin));CHKERRQ(ierr); 160526fbe8dcSKarl Rupp 16064e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 16074e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 16084e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 16094e220ebcSLois Curfman McInnes info->memory = irecv[3]; 16104e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 1611ce94432eSBarry Smith } else SETERRQ1(PetscObjectComm((PetscObject)matin),PETSC_ERR_ARG_WRONG,"Unknown MatInfoType argument %d",(int)flag); 16124e220ebcSLois Curfman McInnes info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */ 16134e220ebcSLois Curfman McInnes info->fill_ratio_needed = 0; 16144e220ebcSLois Curfman McInnes info->factor_mallocs = 0; 16153a40ed3dSBarry Smith PetscFunctionReturn(0); 16160ac07820SSatish Balay } 16170ac07820SSatish Balay 1618ace3abfcSBarry Smith PetscErrorCode MatSetOption_MPIBAIJ(Mat A,MatOption op,PetscBool flg) 161958667388SSatish Balay { 162058667388SSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1621dfbe8321SBarry Smith PetscErrorCode ierr; 162258667388SSatish Balay 1623d64ed03dSBarry Smith PetscFunctionBegin; 162412c028f9SKris Buschelman switch (op) { 1625512a5fc5SBarry Smith case MAT_NEW_NONZERO_LOCATIONS: 162612c028f9SKris Buschelman case MAT_NEW_NONZERO_ALLOCATION_ERR: 162728b2fa4aSMatthew Knepley case MAT_UNUSED_NONZERO_LOCATION_ERR: 1628a9817697SBarry Smith case MAT_KEEP_NONZERO_PATTERN: 162912c028f9SKris Buschelman case MAT_NEW_NONZERO_LOCATION_ERR: 163043674050SBarry Smith MatCheckPreallocated(A,1); 16314e0d8c25SBarry Smith ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 16324e0d8c25SBarry Smith ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr); 163312c028f9SKris Buschelman break; 163412c028f9SKris Buschelman case MAT_ROW_ORIENTED: 163543674050SBarry Smith MatCheckPreallocated(A,1); 16364e0d8c25SBarry Smith a->roworiented = flg; 163726fbe8dcSKarl Rupp 16384e0d8c25SBarry Smith ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 16394e0d8c25SBarry Smith ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr); 164012c028f9SKris Buschelman break; 16414e0d8c25SBarry Smith case MAT_NEW_DIAGONALS: 1642290bbb0aSBarry Smith ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr); 164312c028f9SKris Buschelman break; 164412c028f9SKris Buschelman case MAT_IGNORE_OFF_PROC_ENTRIES: 16454e0d8c25SBarry Smith a->donotstash = flg; 164612c028f9SKris Buschelman break; 164712c028f9SKris Buschelman case MAT_USE_HASH_TABLE: 16484e0d8c25SBarry Smith a->ht_flag = flg; 1649abf3b562SBarry Smith a->ht_fact = 1.39; 165012c028f9SKris Buschelman break; 165177e54ba9SKris Buschelman case MAT_SYMMETRIC: 165277e54ba9SKris Buschelman case MAT_STRUCTURALLY_SYMMETRIC: 16532188ac68SBarry Smith case MAT_HERMITIAN: 1654c10200c1SHong Zhang case MAT_SUBMAT_SINGLEIS: 16552188ac68SBarry Smith case MAT_SYMMETRY_ETERNAL: 165643674050SBarry Smith MatCheckPreallocated(A,1); 16574e0d8c25SBarry Smith ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 165877e54ba9SKris Buschelman break; 165912c028f9SKris Buschelman default: 1660ce94432eSBarry Smith SETERRQ1(PetscObjectComm((PetscObject)A),PETSC_ERR_SUP,"unknown option %d",op); 1661d64ed03dSBarry Smith } 16623a40ed3dSBarry Smith PetscFunctionReturn(0); 166358667388SSatish Balay } 166458667388SSatish Balay 1665fc4dec0aSBarry Smith PetscErrorCode MatTranspose_MPIBAIJ(Mat A,MatReuse reuse,Mat *matout) 16660ac07820SSatish Balay { 16670ac07820SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)A->data; 16680ac07820SSatish Balay Mat_SeqBAIJ *Aloc; 16690ac07820SSatish Balay Mat B; 1670dfbe8321SBarry Smith PetscErrorCode ierr; 1671d0f46423SBarry Smith PetscInt M =A->rmap->N,N=A->cmap->N,*ai,*aj,i,*rvals,j,k,col; 1672d0f46423SBarry Smith PetscInt bs=A->rmap->bs,mbs=baij->mbs; 16733eda8832SBarry Smith MatScalar *a; 16740ac07820SSatish Balay 1675d64ed03dSBarry Smith PetscFunctionBegin; 1676cf37664fSBarry Smith if (reuse == MAT_INITIAL_MATRIX || reuse == MAT_INPLACE_MATRIX) { 1677ce94432eSBarry Smith ierr = MatCreate(PetscObjectComm((PetscObject)A),&B);CHKERRQ(ierr); 1678d0f46423SBarry Smith ierr = MatSetSizes(B,A->cmap->n,A->rmap->n,N,M);CHKERRQ(ierr); 16797adad957SLisandro Dalcin ierr = MatSetType(B,((PetscObject)A)->type_name);CHKERRQ(ierr); 16802e72b8d9SBarry Smith /* Do not know preallocation information, but must set block size */ 16810298fd71SBarry Smith ierr = MatMPIBAIJSetPreallocation(B,A->rmap->bs,PETSC_DECIDE,NULL,PETSC_DECIDE,NULL);CHKERRQ(ierr); 1682fc4dec0aSBarry Smith } else { 1683fc4dec0aSBarry Smith B = *matout; 1684fc4dec0aSBarry Smith } 16850ac07820SSatish Balay 16860ac07820SSatish Balay /* copy over the A part */ 16870ac07820SSatish Balay Aloc = (Mat_SeqBAIJ*)baij->A->data; 16880ac07820SSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 1689785e854fSJed Brown ierr = PetscMalloc1(bs,&rvals);CHKERRQ(ierr); 16900ac07820SSatish Balay 16910ac07820SSatish Balay for (i=0; i<mbs; i++) { 1692899cda47SBarry Smith rvals[0] = bs*(baij->rstartbs + i); 169326fbe8dcSKarl Rupp for (j=1; j<bs; j++) rvals[j] = rvals[j-1] + 1; 16940ac07820SSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 1695899cda47SBarry Smith col = (baij->cstartbs+aj[j])*bs; 16960ac07820SSatish Balay for (k=0; k<bs; k++) { 169797e5c40aSBarry Smith ierr = MatSetValues_MPIBAIJ(B,1,&col,bs,rvals,a,INSERT_VALUES);CHKERRQ(ierr); 169826fbe8dcSKarl Rupp 16990ac07820SSatish Balay col++; a += bs; 17000ac07820SSatish Balay } 17010ac07820SSatish Balay } 17020ac07820SSatish Balay } 17030ac07820SSatish Balay /* copy over the B part */ 17040ac07820SSatish Balay Aloc = (Mat_SeqBAIJ*)baij->B->data; 17050ac07820SSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 17060ac07820SSatish Balay for (i=0; i<mbs; i++) { 1707899cda47SBarry Smith rvals[0] = bs*(baij->rstartbs + i); 170826fbe8dcSKarl Rupp for (j=1; j<bs; j++) rvals[j] = rvals[j-1] + 1; 17090ac07820SSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 17100ac07820SSatish Balay col = baij->garray[aj[j]]*bs; 17110ac07820SSatish Balay for (k=0; k<bs; k++) { 171297e5c40aSBarry Smith ierr = MatSetValues_MPIBAIJ(B,1,&col,bs,rvals,a,INSERT_VALUES);CHKERRQ(ierr); 171326fbe8dcSKarl Rupp col++; 171426fbe8dcSKarl Rupp a += bs; 17150ac07820SSatish Balay } 17160ac07820SSatish Balay } 17170ac07820SSatish Balay } 1718606d414cSSatish Balay ierr = PetscFree(rvals);CHKERRQ(ierr); 17190ac07820SSatish Balay ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 17200ac07820SSatish Balay ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 17210ac07820SSatish Balay 1722cf37664fSBarry Smith if (reuse == MAT_INITIAL_MATRIX || reuse == MAT_REUSE_MATRIX) *matout = B; 172326fbe8dcSKarl Rupp else { 172428be2f97SBarry Smith ierr = MatHeaderMerge(A,&B);CHKERRQ(ierr); 17250ac07820SSatish Balay } 17263a40ed3dSBarry Smith PetscFunctionReturn(0); 17270ac07820SSatish Balay } 17280e95ebc0SSatish Balay 1729dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_MPIBAIJ(Mat mat,Vec ll,Vec rr) 17300e95ebc0SSatish Balay { 173136c4a09eSSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 173236c4a09eSSatish Balay Mat a = baij->A,b = baij->B; 1733dfbe8321SBarry Smith PetscErrorCode ierr; 1734b24ad042SBarry Smith PetscInt s1,s2,s3; 17350e95ebc0SSatish Balay 1736d64ed03dSBarry Smith PetscFunctionBegin; 173736c4a09eSSatish Balay ierr = MatGetLocalSize(mat,&s2,&s3);CHKERRQ(ierr); 173836c4a09eSSatish Balay if (rr) { 173936c4a09eSSatish Balay ierr = VecGetLocalSize(rr,&s1);CHKERRQ(ierr); 1740e32f2f54SBarry Smith if (s1!=s3) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"right vector non-conforming local size"); 174136c4a09eSSatish Balay /* Overlap communication with computation. */ 1742ca9f406cSSatish Balay ierr = VecScatterBegin(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 174336c4a09eSSatish Balay } 17440e95ebc0SSatish Balay if (ll) { 17450e95ebc0SSatish Balay ierr = VecGetLocalSize(ll,&s1);CHKERRQ(ierr); 1746e32f2f54SBarry Smith if (s1!=s2) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"left vector non-conforming local size"); 17470298fd71SBarry Smith ierr = (*b->ops->diagonalscale)(b,ll,NULL);CHKERRQ(ierr); 17480e95ebc0SSatish Balay } 174936c4a09eSSatish Balay /* scale the diagonal block */ 175036c4a09eSSatish Balay ierr = (*a->ops->diagonalscale)(a,ll,rr);CHKERRQ(ierr); 175136c4a09eSSatish Balay 175236c4a09eSSatish Balay if (rr) { 175336c4a09eSSatish Balay /* Do a scatter end and then right scale the off-diagonal block */ 1754ca9f406cSSatish Balay ierr = VecScatterEnd(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 17550298fd71SBarry Smith ierr = (*b->ops->diagonalscale)(b,NULL,baij->lvec);CHKERRQ(ierr); 175636c4a09eSSatish Balay } 17573a40ed3dSBarry Smith PetscFunctionReturn(0); 17580e95ebc0SSatish Balay } 17590e95ebc0SSatish Balay 17602b40b63fSBarry Smith PetscErrorCode MatZeroRows_MPIBAIJ(Mat A,PetscInt N,const PetscInt rows[],PetscScalar diag,Vec x,Vec b) 17610ac07820SSatish Balay { 17620ac07820SSatish Balay Mat_MPIBAIJ *l = (Mat_MPIBAIJ *) A->data; 176365a92638SMatthew G. Knepley PetscInt *lrows; 17646e520ac8SStefano Zampini PetscInt r, len; 176594342113SStefano Zampini PetscBool cong; 17666849ba73SBarry Smith PetscErrorCode ierr; 17670ac07820SSatish Balay 1768d64ed03dSBarry Smith PetscFunctionBegin; 17696e520ac8SStefano Zampini /* get locally owned rows */ 17706e520ac8SStefano Zampini ierr = MatZeroRowsMapLocal_Private(A,N,rows,&len,&lrows);CHKERRQ(ierr); 177197b48c8fSBarry Smith /* fix right hand side if needed */ 177297b48c8fSBarry Smith if (x && b) { 177365a92638SMatthew G. Knepley const PetscScalar *xx; 177465a92638SMatthew G. Knepley PetscScalar *bb; 177565a92638SMatthew G. Knepley 177697b48c8fSBarry Smith ierr = VecGetArrayRead(x,&xx);CHKERRQ(ierr); 177797b48c8fSBarry Smith ierr = VecGetArray(b,&bb);CHKERRQ(ierr); 177865a92638SMatthew G. Knepley for (r = 0; r < len; ++r) bb[lrows[r]] = diag*xx[lrows[r]]; 177997b48c8fSBarry Smith ierr = VecRestoreArrayRead(x,&xx);CHKERRQ(ierr); 178097b48c8fSBarry Smith ierr = VecRestoreArray(b,&bb);CHKERRQ(ierr); 178197b48c8fSBarry Smith } 178297b48c8fSBarry Smith 17830ac07820SSatish Balay /* actually zap the local rows */ 178472dacd9aSBarry Smith /* 178572dacd9aSBarry Smith Zero the required rows. If the "diagonal block" of the matrix 1786a8c7a070SBarry Smith is square and the user wishes to set the diagonal we use separate 178772dacd9aSBarry Smith code so that MatSetValues() is not called for each diagonal allocating 178872dacd9aSBarry Smith new memory, thus calling lots of mallocs and slowing things down. 178972dacd9aSBarry Smith 179072dacd9aSBarry Smith */ 17919c957beeSSatish Balay /* must zero l->B before l->A because the (diag) case below may put values into l->B*/ 1792a34163a4SJed Brown ierr = MatZeroRows_SeqBAIJ(l->B,len,lrows,0.0,NULL,NULL);CHKERRQ(ierr); 179394342113SStefano Zampini ierr = MatHasCongruentLayouts(A,&cong);CHKERRQ(ierr); 179494342113SStefano Zampini if ((diag != 0.0) && cong) { 1795a34163a4SJed Brown ierr = MatZeroRows_SeqBAIJ(l->A,len,lrows,diag,NULL,NULL);CHKERRQ(ierr); 1796f4df32b1SMatthew Knepley } else if (diag != 0.0) { 179765a92638SMatthew G. Knepley ierr = MatZeroRows_SeqBAIJ(l->A,len,lrows,0.0,0,0);CHKERRQ(ierr); 1798e7e72b3dSBarry Smith if (((Mat_SeqBAIJ*)l->A->data)->nonew) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"MatZeroRows() on rectangular matrices cannot be used with the Mat options \n\ 1799512a5fc5SBarry Smith MAT_NEW_NONZERO_LOCATIONS,MAT_NEW_NONZERO_LOCATION_ERR,MAT_NEW_NONZERO_ALLOCATION_ERR"); 180065a92638SMatthew G. Knepley for (r = 0; r < len; ++r) { 180165a92638SMatthew G. Knepley const PetscInt row = lrows[r] + A->rmap->rstart; 1802f4df32b1SMatthew Knepley ierr = MatSetValues(A,1,&row,1,&row,&diag,INSERT_VALUES);CHKERRQ(ierr); 1803a07cd24cSSatish Balay } 1804a07cd24cSSatish Balay ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 1805a07cd24cSSatish Balay ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 18069c957beeSSatish Balay } else { 1807a34163a4SJed Brown ierr = MatZeroRows_SeqBAIJ(l->A,len,lrows,0.0,NULL,NULL);CHKERRQ(ierr); 1808a07cd24cSSatish Balay } 1809606d414cSSatish Balay ierr = PetscFree(lrows);CHKERRQ(ierr); 18104f9cfa9eSBarry Smith 18114f9cfa9eSBarry Smith /* only change matrix nonzero state if pattern was allowed to be changed */ 18124f9cfa9eSBarry Smith if (!((Mat_SeqBAIJ*)(l->A->data))->keepnonzeropattern) { 1813e56f5c9eSBarry Smith PetscObjectState state = l->A->nonzerostate + l->B->nonzerostate; 1814b2566f29SBarry Smith ierr = MPIU_Allreduce(&state,&A->nonzerostate,1,MPIU_INT64,MPI_SUM,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 1815e56f5c9eSBarry Smith } 18163a40ed3dSBarry Smith PetscFunctionReturn(0); 18170ac07820SSatish Balay } 181872dacd9aSBarry Smith 18196f0a72daSMatthew G. Knepley PetscErrorCode MatZeroRowsColumns_MPIBAIJ(Mat A,PetscInt N,const PetscInt rows[],PetscScalar diag,Vec x,Vec b) 18206f0a72daSMatthew G. Knepley { 18216f0a72daSMatthew G. Knepley Mat_MPIBAIJ *l = (Mat_MPIBAIJ*)A->data; 18226f0a72daSMatthew G. Knepley PetscErrorCode ierr; 18235ba17502SJed Brown PetscMPIInt n = A->rmap->n; 1824fbb64d0eSMatthew G. Knepley PetscInt i,j,k,r,p = 0,len = 0,row,col,count; 18256f0a72daSMatthew G. Knepley PetscInt *lrows,*owners = A->rmap->range; 18266f0a72daSMatthew G. Knepley PetscSFNode *rrows; 18276f0a72daSMatthew G. Knepley PetscSF sf; 18286f0a72daSMatthew G. Knepley const PetscScalar *xx; 18296f0a72daSMatthew G. Knepley PetscScalar *bb,*mask; 18306f0a72daSMatthew G. Knepley Vec xmask,lmask; 18316f0a72daSMatthew G. Knepley Mat_SeqBAIJ *baij = (Mat_SeqBAIJ*)l->B->data; 18326f0a72daSMatthew G. Knepley PetscInt bs = A->rmap->bs, bs2 = baij->bs2; 18336f0a72daSMatthew G. Knepley PetscScalar *aa; 18346f0a72daSMatthew G. Knepley 18356f0a72daSMatthew G. Knepley PetscFunctionBegin; 18366f0a72daSMatthew G. Knepley /* Create SF where leaves are input rows and roots are owned rows */ 18376f0a72daSMatthew G. Knepley ierr = PetscMalloc1(n, &lrows);CHKERRQ(ierr); 18386f0a72daSMatthew G. Knepley for (r = 0; r < n; ++r) lrows[r] = -1; 18396f0a72daSMatthew G. Knepley ierr = PetscMalloc1(N, &rrows);CHKERRQ(ierr); 18406f0a72daSMatthew G. Knepley for (r = 0; r < N; ++r) { 18416f0a72daSMatthew G. Knepley const PetscInt idx = rows[r]; 18425ba17502SJed Brown if (idx < 0 || A->rmap->N <= idx) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row %D out of range [0,%D)",idx,A->rmap->N); 18435ba17502SJed Brown if (idx < owners[p] || owners[p+1] <= idx) { /* short-circuit the search if the last p owns this row too */ 18445ba17502SJed Brown ierr = PetscLayoutFindOwner(A->rmap,idx,&p);CHKERRQ(ierr); 18455ba17502SJed Brown } 18466f0a72daSMatthew G. Knepley rrows[r].rank = p; 18476f0a72daSMatthew G. Knepley rrows[r].index = rows[r] - owners[p]; 18486f0a72daSMatthew G. Knepley } 18496f0a72daSMatthew G. Knepley ierr = PetscSFCreate(PetscObjectComm((PetscObject) A), &sf);CHKERRQ(ierr); 18506f0a72daSMatthew G. Knepley ierr = PetscSFSetGraph(sf, n, N, NULL, PETSC_OWN_POINTER, rrows, PETSC_OWN_POINTER);CHKERRQ(ierr); 18516f0a72daSMatthew G. Knepley /* Collect flags for rows to be zeroed */ 18526f0a72daSMatthew G. Knepley ierr = PetscSFReduceBegin(sf, MPIU_INT, (PetscInt *) rows, lrows, MPI_LOR);CHKERRQ(ierr); 18536f0a72daSMatthew G. Knepley ierr = PetscSFReduceEnd(sf, MPIU_INT, (PetscInt *) rows, lrows, MPI_LOR);CHKERRQ(ierr); 18546f0a72daSMatthew G. Knepley ierr = PetscSFDestroy(&sf);CHKERRQ(ierr); 18556f0a72daSMatthew G. Knepley /* Compress and put in row numbers */ 18566f0a72daSMatthew G. Knepley for (r = 0; r < n; ++r) if (lrows[r] >= 0) lrows[len++] = r; 18576f0a72daSMatthew G. Knepley /* zero diagonal part of matrix */ 18586f0a72daSMatthew G. Knepley ierr = MatZeroRowsColumns(l->A,len,lrows,diag,x,b);CHKERRQ(ierr); 18596f0a72daSMatthew G. Knepley /* handle off diagonal part of matrix */ 18602a7a6963SBarry Smith ierr = MatCreateVecs(A,&xmask,NULL);CHKERRQ(ierr); 18616f0a72daSMatthew G. Knepley ierr = VecDuplicate(l->lvec,&lmask);CHKERRQ(ierr); 18626f0a72daSMatthew G. Knepley ierr = VecGetArray(xmask,&bb);CHKERRQ(ierr); 18636f0a72daSMatthew G. Knepley for (i=0; i<len; i++) bb[lrows[i]] = 1; 18646f0a72daSMatthew G. Knepley ierr = VecRestoreArray(xmask,&bb);CHKERRQ(ierr); 18656f0a72daSMatthew G. Knepley ierr = VecScatterBegin(l->Mvctx,xmask,lmask,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 18666f0a72daSMatthew G. Knepley ierr = VecScatterEnd(l->Mvctx,xmask,lmask,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 18676f0a72daSMatthew G. Knepley ierr = VecDestroy(&xmask);CHKERRQ(ierr); 18686f0a72daSMatthew G. Knepley if (x) { 18696f0a72daSMatthew G. Knepley ierr = VecScatterBegin(l->Mvctx,x,l->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 18706f0a72daSMatthew G. Knepley ierr = VecScatterEnd(l->Mvctx,x,l->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 18716f0a72daSMatthew G. Knepley ierr = VecGetArrayRead(l->lvec,&xx);CHKERRQ(ierr); 18726f0a72daSMatthew G. Knepley ierr = VecGetArray(b,&bb);CHKERRQ(ierr); 18736f0a72daSMatthew G. Knepley } 18746f0a72daSMatthew G. Knepley ierr = VecGetArray(lmask,&mask);CHKERRQ(ierr); 18756f0a72daSMatthew G. Knepley /* remove zeroed rows of off diagonal matrix */ 18766f0a72daSMatthew G. Knepley for (i = 0; i < len; ++i) { 18776f0a72daSMatthew G. Knepley row = lrows[i]; 18786f0a72daSMatthew G. Knepley count = (baij->i[row/bs +1] - baij->i[row/bs])*bs; 18796f0a72daSMatthew G. Knepley aa = ((MatScalar*)(baij->a)) + baij->i[row/bs]*bs2 + (row%bs); 18806f0a72daSMatthew G. Knepley for (k = 0; k < count; ++k) { 18816f0a72daSMatthew G. Knepley aa[0] = 0.0; 18826f0a72daSMatthew G. Knepley aa += bs; 18836f0a72daSMatthew G. Knepley } 18846f0a72daSMatthew G. Knepley } 18856f0a72daSMatthew G. Knepley /* loop over all elements of off process part of matrix zeroing removed columns*/ 18866f0a72daSMatthew G. Knepley for (i = 0; i < l->B->rmap->N; ++i) { 18876f0a72daSMatthew G. Knepley row = i/bs; 18886f0a72daSMatthew G. Knepley for (j = baij->i[row]; j < baij->i[row+1]; ++j) { 18896f0a72daSMatthew G. Knepley for (k = 0; k < bs; ++k) { 18906f0a72daSMatthew G. Knepley col = bs*baij->j[j] + k; 18916f0a72daSMatthew G. Knepley if (PetscAbsScalar(mask[col])) { 18926f0a72daSMatthew G. Knepley aa = ((MatScalar*)(baij->a)) + j*bs2 + (i%bs) + bs*k; 189389ae1891SBarry Smith if (x) bb[i] -= aa[0]*xx[col]; 18946f0a72daSMatthew G. Knepley aa[0] = 0.0; 18956f0a72daSMatthew G. Knepley } 18966f0a72daSMatthew G. Knepley } 18976f0a72daSMatthew G. Knepley } 18986f0a72daSMatthew G. Knepley } 18996f0a72daSMatthew G. Knepley if (x) { 19006f0a72daSMatthew G. Knepley ierr = VecRestoreArray(b,&bb);CHKERRQ(ierr); 19016f0a72daSMatthew G. Knepley ierr = VecRestoreArrayRead(l->lvec,&xx);CHKERRQ(ierr); 19026f0a72daSMatthew G. Knepley } 19036f0a72daSMatthew G. Knepley ierr = VecRestoreArray(lmask,&mask);CHKERRQ(ierr); 19046f0a72daSMatthew G. Knepley ierr = VecDestroy(&lmask);CHKERRQ(ierr); 19056f0a72daSMatthew G. Knepley ierr = PetscFree(lrows);CHKERRQ(ierr); 19064f9cfa9eSBarry Smith 19074f9cfa9eSBarry Smith /* only change matrix nonzero state if pattern was allowed to be changed */ 19084f9cfa9eSBarry Smith if (!((Mat_SeqBAIJ*)(l->A->data))->keepnonzeropattern) { 19094f9cfa9eSBarry Smith PetscObjectState state = l->A->nonzerostate + l->B->nonzerostate; 1910b2566f29SBarry Smith ierr = MPIU_Allreduce(&state,&A->nonzerostate,1,MPIU_INT64,MPI_SUM,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 19114f9cfa9eSBarry Smith } 19126f0a72daSMatthew G. Knepley PetscFunctionReturn(0); 19136f0a72daSMatthew G. Knepley } 19146f0a72daSMatthew G. Knepley 1915dfbe8321SBarry Smith PetscErrorCode MatSetUnfactored_MPIBAIJ(Mat A) 1916bb5a7306SBarry Smith { 1917bb5a7306SBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1918dfbe8321SBarry Smith PetscErrorCode ierr; 1919d64ed03dSBarry Smith 1920d64ed03dSBarry Smith PetscFunctionBegin; 1921bb5a7306SBarry Smith ierr = MatSetUnfactored(a->A);CHKERRQ(ierr); 19223a40ed3dSBarry Smith PetscFunctionReturn(0); 1923bb5a7306SBarry Smith } 1924bb5a7306SBarry Smith 19256849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIBAIJ(Mat,MatDuplicateOption,Mat*); 19260ac07820SSatish Balay 1927ace3abfcSBarry Smith PetscErrorCode MatEqual_MPIBAIJ(Mat A,Mat B,PetscBool *flag) 19287fc3c18eSBarry Smith { 19297fc3c18eSBarry Smith Mat_MPIBAIJ *matB = (Mat_MPIBAIJ*)B->data,*matA = (Mat_MPIBAIJ*)A->data; 19307fc3c18eSBarry Smith Mat a,b,c,d; 1931ace3abfcSBarry Smith PetscBool flg; 1932dfbe8321SBarry Smith PetscErrorCode ierr; 19337fc3c18eSBarry Smith 19347fc3c18eSBarry Smith PetscFunctionBegin; 19357fc3c18eSBarry Smith a = matA->A; b = matA->B; 19367fc3c18eSBarry Smith c = matB->A; d = matB->B; 19377fc3c18eSBarry Smith 19387fc3c18eSBarry Smith ierr = MatEqual(a,c,&flg);CHKERRQ(ierr); 1939abc0a331SBarry Smith if (flg) { 19407fc3c18eSBarry Smith ierr = MatEqual(b,d,&flg);CHKERRQ(ierr); 19417fc3c18eSBarry Smith } 1942b2566f29SBarry Smith ierr = MPIU_Allreduce(&flg,flag,1,MPIU_BOOL,MPI_LAND,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 19437fc3c18eSBarry Smith PetscFunctionReturn(0); 19447fc3c18eSBarry Smith } 19457fc3c18eSBarry Smith 19463c896bc6SHong Zhang PetscErrorCode MatCopy_MPIBAIJ(Mat A,Mat B,MatStructure str) 19473c896bc6SHong Zhang { 19483c896bc6SHong Zhang PetscErrorCode ierr; 19493c896bc6SHong Zhang Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 19503c896bc6SHong Zhang Mat_MPIBAIJ *b = (Mat_MPIBAIJ*)B->data; 19513c896bc6SHong Zhang 19523c896bc6SHong Zhang PetscFunctionBegin; 19533c896bc6SHong Zhang /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */ 19543c896bc6SHong Zhang if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) { 19553c896bc6SHong Zhang ierr = MatCopy_Basic(A,B,str);CHKERRQ(ierr); 19563c896bc6SHong Zhang } else { 19573c896bc6SHong Zhang ierr = MatCopy(a->A,b->A,str);CHKERRQ(ierr); 19583c896bc6SHong Zhang ierr = MatCopy(a->B,b->B,str);CHKERRQ(ierr); 19593c896bc6SHong Zhang } 1960cdc753b6SBarry Smith ierr = PetscObjectStateIncrease((PetscObject)B);CHKERRQ(ierr); 19613c896bc6SHong Zhang PetscFunctionReturn(0); 19623c896bc6SHong Zhang } 1963273d9f13SBarry Smith 19644994cf47SJed Brown PetscErrorCode MatSetUp_MPIBAIJ(Mat A) 1965273d9f13SBarry Smith { 1966dfbe8321SBarry Smith PetscErrorCode ierr; 1967273d9f13SBarry Smith 1968273d9f13SBarry Smith PetscFunctionBegin; 1969535b19f3SBarry Smith ierr = MatMPIBAIJSetPreallocation(A,A->rmap->bs,PETSC_DEFAULT,0,PETSC_DEFAULT,0);CHKERRQ(ierr); 1970273d9f13SBarry Smith PetscFunctionReturn(0); 1971273d9f13SBarry Smith } 1972273d9f13SBarry Smith 19734de5dceeSHong Zhang PetscErrorCode MatAXPYGetPreallocation_MPIBAIJ(Mat Y,const PetscInt *yltog,Mat X,const PetscInt *xltog,PetscInt *nnz) 19744de5dceeSHong Zhang { 1975001ddc4fSHong Zhang PetscErrorCode ierr; 1976001ddc4fSHong Zhang PetscInt bs = Y->rmap->bs,m = Y->rmap->N/bs; 19774de5dceeSHong Zhang Mat_SeqBAIJ *x = (Mat_SeqBAIJ*)X->data; 19784de5dceeSHong Zhang Mat_SeqBAIJ *y = (Mat_SeqBAIJ*)Y->data; 19794de5dceeSHong Zhang 19804de5dceeSHong Zhang PetscFunctionBegin; 1981001ddc4fSHong Zhang ierr = MatAXPYGetPreallocation_MPIX_private(m,x->i,x->j,xltog,y->i,y->j,yltog,nnz);CHKERRQ(ierr); 19824de5dceeSHong Zhang PetscFunctionReturn(0); 19834de5dceeSHong Zhang } 19844de5dceeSHong Zhang 19854fe895cdSHong Zhang PetscErrorCode MatAXPY_MPIBAIJ(Mat Y,PetscScalar a,Mat X,MatStructure str) 19864fe895cdSHong Zhang { 19874fe895cdSHong Zhang PetscErrorCode ierr; 19884fe895cdSHong Zhang Mat_MPIBAIJ *xx=(Mat_MPIBAIJ*)X->data,*yy=(Mat_MPIBAIJ*)Y->data; 19894fe895cdSHong Zhang PetscBLASInt bnz,one=1; 19904fe895cdSHong Zhang Mat_SeqBAIJ *x,*y; 1991b31f67cfSBarry Smith PetscInt bs2 = Y->rmap->bs*Y->rmap->bs; 19924fe895cdSHong Zhang 19934fe895cdSHong Zhang PetscFunctionBegin; 19944fe895cdSHong Zhang if (str == SAME_NONZERO_PATTERN) { 19954fe895cdSHong Zhang PetscScalar alpha = a; 19964fe895cdSHong Zhang x = (Mat_SeqBAIJ*)xx->A->data; 19974fe895cdSHong Zhang y = (Mat_SeqBAIJ*)yy->A->data; 1998b31f67cfSBarry Smith ierr = PetscBLASIntCast(x->nz*bs2,&bnz);CHKERRQ(ierr); 19998b83055fSJed Brown PetscStackCallBLAS("BLASaxpy",BLASaxpy_(&bnz,&alpha,x->a,&one,y->a,&one)); 20004fe895cdSHong Zhang x = (Mat_SeqBAIJ*)xx->B->data; 20014fe895cdSHong Zhang y = (Mat_SeqBAIJ*)yy->B->data; 2002b31f67cfSBarry Smith ierr = PetscBLASIntCast(x->nz*bs2,&bnz);CHKERRQ(ierr); 20038b83055fSJed Brown PetscStackCallBLAS("BLASaxpy",BLASaxpy_(&bnz,&alpha,x->a,&one,y->a,&one)); 2004a3fa217bSJose E. Roman ierr = PetscObjectStateIncrease((PetscObject)Y);CHKERRQ(ierr); 2005ab784542SHong Zhang } else if (str == SUBSET_NONZERO_PATTERN) { /* nonzeros of X is a subset of Y's */ 2006ab784542SHong Zhang ierr = MatAXPY_Basic(Y,a,X,str);CHKERRQ(ierr); 20074fe895cdSHong Zhang } else { 20084de5dceeSHong Zhang Mat B; 20094de5dceeSHong Zhang PetscInt *nnz_d,*nnz_o,bs=Y->rmap->bs; 20104de5dceeSHong Zhang ierr = PetscMalloc1(yy->A->rmap->N,&nnz_d);CHKERRQ(ierr); 20114de5dceeSHong Zhang ierr = PetscMalloc1(yy->B->rmap->N,&nnz_o);CHKERRQ(ierr); 20124de5dceeSHong Zhang ierr = MatCreate(PetscObjectComm((PetscObject)Y),&B);CHKERRQ(ierr); 20134de5dceeSHong Zhang ierr = PetscObjectSetName((PetscObject)B,((PetscObject)Y)->name);CHKERRQ(ierr); 20144de5dceeSHong Zhang ierr = MatSetSizes(B,Y->rmap->n,Y->cmap->n,Y->rmap->N,Y->cmap->N);CHKERRQ(ierr); 20154de5dceeSHong Zhang ierr = MatSetBlockSizesFromMats(B,Y,Y);CHKERRQ(ierr); 20164de5dceeSHong Zhang ierr = MatSetType(B,MATMPIBAIJ);CHKERRQ(ierr); 20174de5dceeSHong Zhang ierr = MatAXPYGetPreallocation_SeqBAIJ(yy->A,xx->A,nnz_d);CHKERRQ(ierr); 20184de5dceeSHong Zhang ierr = MatAXPYGetPreallocation_MPIBAIJ(yy->B,yy->garray,xx->B,xx->garray,nnz_o);CHKERRQ(ierr); 20194de5dceeSHong Zhang ierr = MatMPIBAIJSetPreallocation(B,bs,0,nnz_d,0,nnz_o);CHKERRQ(ierr); 20204de5dceeSHong Zhang /* MatAXPY_BasicWithPreallocation() for BAIJ matrix is much slower than AIJ, even for bs=1 ! */ 20214de5dceeSHong Zhang ierr = MatAXPY_BasicWithPreallocation(B,Y,a,X,str);CHKERRQ(ierr); 202228be2f97SBarry Smith ierr = MatHeaderReplace(Y,&B);CHKERRQ(ierr); 20234de5dceeSHong Zhang ierr = PetscFree(nnz_d);CHKERRQ(ierr); 20244de5dceeSHong Zhang ierr = PetscFree(nnz_o);CHKERRQ(ierr); 20254fe895cdSHong Zhang } 20264fe895cdSHong Zhang PetscFunctionReturn(0); 20274fe895cdSHong Zhang } 20284fe895cdSHong Zhang 202999cafbc1SBarry Smith PetscErrorCode MatRealPart_MPIBAIJ(Mat A) 203099cafbc1SBarry Smith { 203199cafbc1SBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 203299cafbc1SBarry Smith PetscErrorCode ierr; 203399cafbc1SBarry Smith 203499cafbc1SBarry Smith PetscFunctionBegin; 203599cafbc1SBarry Smith ierr = MatRealPart(a->A);CHKERRQ(ierr); 203699cafbc1SBarry Smith ierr = MatRealPart(a->B);CHKERRQ(ierr); 203799cafbc1SBarry Smith PetscFunctionReturn(0); 203899cafbc1SBarry Smith } 203999cafbc1SBarry Smith 204099cafbc1SBarry Smith PetscErrorCode MatImaginaryPart_MPIBAIJ(Mat A) 204199cafbc1SBarry Smith { 204299cafbc1SBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 204399cafbc1SBarry Smith PetscErrorCode ierr; 204499cafbc1SBarry Smith 204599cafbc1SBarry Smith PetscFunctionBegin; 204699cafbc1SBarry Smith ierr = MatImaginaryPart(a->A);CHKERRQ(ierr); 204799cafbc1SBarry Smith ierr = MatImaginaryPart(a->B);CHKERRQ(ierr); 204899cafbc1SBarry Smith PetscFunctionReturn(0); 204999cafbc1SBarry Smith } 205099cafbc1SBarry Smith 20517dae84e0SHong Zhang PetscErrorCode MatCreateSubMatrix_MPIBAIJ(Mat mat,IS isrow,IS iscol,MatReuse call,Mat *newmat) 20524aa3045dSJed Brown { 20534aa3045dSJed Brown PetscErrorCode ierr; 20544aa3045dSJed Brown IS iscol_local; 20554aa3045dSJed Brown PetscInt csize; 20564aa3045dSJed Brown 20574aa3045dSJed Brown PetscFunctionBegin; 20584aa3045dSJed Brown ierr = ISGetLocalSize(iscol,&csize);CHKERRQ(ierr); 2059b79d0421SJed Brown if (call == MAT_REUSE_MATRIX) { 2060b79d0421SJed Brown ierr = PetscObjectQuery((PetscObject)*newmat,"ISAllGather",(PetscObject*)&iscol_local);CHKERRQ(ierr); 2061e32f2f54SBarry Smith if (!iscol_local) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Submatrix passed in was not used before, cannot reuse"); 2062b79d0421SJed Brown } else { 20634aa3045dSJed Brown ierr = ISAllGather(iscol,&iscol_local);CHKERRQ(ierr); 2064b79d0421SJed Brown } 20657dae84e0SHong Zhang ierr = MatCreateSubMatrix_MPIBAIJ_Private(mat,isrow,iscol_local,csize,call,newmat);CHKERRQ(ierr); 2066b79d0421SJed Brown if (call == MAT_INITIAL_MATRIX) { 2067b79d0421SJed Brown ierr = PetscObjectCompose((PetscObject)*newmat,"ISAllGather",(PetscObject)iscol_local);CHKERRQ(ierr); 20686bf464f9SBarry Smith ierr = ISDestroy(&iscol_local);CHKERRQ(ierr); 2069b79d0421SJed Brown } 20704aa3045dSJed Brown PetscFunctionReturn(0); 20714aa3045dSJed Brown } 207217df9f7cSHong Zhang 207382094794SBarry Smith /* 207482094794SBarry Smith Not great since it makes two copies of the submatrix, first an SeqBAIJ 207582094794SBarry Smith in local and then by concatenating the local matrices the end result. 20767dae84e0SHong Zhang Writing it directly would be much like MatCreateSubMatrices_MPIBAIJ(). 20778f46ffcaSHong Zhang This routine is used for BAIJ and SBAIJ matrices (unfortunate dependency). 207882094794SBarry Smith */ 20797dae84e0SHong Zhang PetscErrorCode MatCreateSubMatrix_MPIBAIJ_Private(Mat mat,IS isrow,IS iscol,PetscInt csize,MatReuse call,Mat *newmat) 208082094794SBarry Smith { 208182094794SBarry Smith PetscErrorCode ierr; 208282094794SBarry Smith PetscMPIInt rank,size; 208382094794SBarry Smith PetscInt i,m,n,rstart,row,rend,nz,*cwork,j,bs; 2084c9ffca76SHong Zhang PetscInt *ii,*jj,nlocal,*dlens,*olens,dlen,olen,jend,mglobal; 208529dcf524SDmitry Karpeev Mat M,Mreuse; 208682094794SBarry Smith MatScalar *vwork,*aa; 2087ce94432eSBarry Smith MPI_Comm comm; 208829dcf524SDmitry Karpeev IS isrow_new, iscol_new; 208982094794SBarry Smith Mat_SeqBAIJ *aij; 209082094794SBarry Smith 209182094794SBarry Smith PetscFunctionBegin; 2092ce94432eSBarry Smith ierr = PetscObjectGetComm((PetscObject)mat,&comm);CHKERRQ(ierr); 209382094794SBarry Smith ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 209482094794SBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 209529dcf524SDmitry Karpeev /* The compression and expansion should be avoided. Doesn't point 209629dcf524SDmitry Karpeev out errors, might change the indices, hence buggey */ 209729dcf524SDmitry Karpeev ierr = ISCompressIndicesGeneral(mat->rmap->N,mat->rmap->n,mat->rmap->bs,1,&isrow,&isrow_new);CHKERRQ(ierr); 209829dcf524SDmitry Karpeev ierr = ISCompressIndicesGeneral(mat->cmap->N,mat->cmap->n,mat->cmap->bs,1,&iscol,&iscol_new);CHKERRQ(ierr); 209982094794SBarry Smith 210082094794SBarry Smith if (call == MAT_REUSE_MATRIX) { 210182094794SBarry Smith ierr = PetscObjectQuery((PetscObject)*newmat,"SubMatrix",(PetscObject*)&Mreuse);CHKERRQ(ierr); 2102e32f2f54SBarry Smith if (!Mreuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Submatrix passed in was not used before, cannot reuse"); 21037dae84e0SHong Zhang ierr = MatCreateSubMatrices_MPIBAIJ_local(mat,1,&isrow_new,&iscol_new,MAT_REUSE_MATRIX,&Mreuse);CHKERRQ(ierr); 210482094794SBarry Smith } else { 21057dae84e0SHong Zhang ierr = MatCreateSubMatrices_MPIBAIJ_local(mat,1,&isrow_new,&iscol_new,MAT_INITIAL_MATRIX,&Mreuse);CHKERRQ(ierr); 210682094794SBarry Smith } 210729dcf524SDmitry Karpeev ierr = ISDestroy(&isrow_new);CHKERRQ(ierr); 210829dcf524SDmitry Karpeev ierr = ISDestroy(&iscol_new);CHKERRQ(ierr); 210982094794SBarry Smith /* 211082094794SBarry Smith m - number of local rows 211182094794SBarry Smith n - number of columns (same on all processors) 211282094794SBarry Smith rstart - first row in new global matrix generated 211382094794SBarry Smith */ 211482094794SBarry Smith ierr = MatGetBlockSize(mat,&bs);CHKERRQ(ierr); 211582094794SBarry Smith ierr = MatGetSize(Mreuse,&m,&n);CHKERRQ(ierr); 211682094794SBarry Smith m = m/bs; 211782094794SBarry Smith n = n/bs; 211882094794SBarry Smith 211982094794SBarry Smith if (call == MAT_INITIAL_MATRIX) { 212082094794SBarry Smith aij = (Mat_SeqBAIJ*)(Mreuse)->data; 212182094794SBarry Smith ii = aij->i; 212282094794SBarry Smith jj = aij->j; 212382094794SBarry Smith 212482094794SBarry Smith /* 212582094794SBarry Smith Determine the number of non-zeros in the diagonal and off-diagonal 212682094794SBarry Smith portions of the matrix in order to do correct preallocation 212782094794SBarry Smith */ 212882094794SBarry Smith 212982094794SBarry Smith /* first get start and end of "diagonal" columns */ 213082094794SBarry Smith if (csize == PETSC_DECIDE) { 213182094794SBarry Smith ierr = ISGetSize(isrow,&mglobal);CHKERRQ(ierr); 213282094794SBarry Smith if (mglobal == n*bs) { /* square matrix */ 213382094794SBarry Smith nlocal = m; 213482094794SBarry Smith } else { 213582094794SBarry Smith nlocal = n/size + ((n % size) > rank); 213682094794SBarry Smith } 213782094794SBarry Smith } else { 213882094794SBarry Smith nlocal = csize/bs; 213982094794SBarry Smith } 214082094794SBarry Smith ierr = MPI_Scan(&nlocal,&rend,1,MPIU_INT,MPI_SUM,comm);CHKERRQ(ierr); 214182094794SBarry Smith rstart = rend - nlocal; 214265e19b50SBarry Smith if (rank == size - 1 && rend != n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Local column sizes %D do not add up to total number of columns %D",rend,n); 214382094794SBarry Smith 214482094794SBarry Smith /* next, compute all the lengths */ 2145dcca6d9dSJed Brown ierr = PetscMalloc2(m+1,&dlens,m+1,&olens);CHKERRQ(ierr); 214682094794SBarry Smith for (i=0; i<m; i++) { 214782094794SBarry Smith jend = ii[i+1] - ii[i]; 214882094794SBarry Smith olen = 0; 214982094794SBarry Smith dlen = 0; 215082094794SBarry Smith for (j=0; j<jend; j++) { 215182094794SBarry Smith if (*jj < rstart || *jj >= rend) olen++; 215282094794SBarry Smith else dlen++; 215382094794SBarry Smith jj++; 215482094794SBarry Smith } 215582094794SBarry Smith olens[i] = olen; 215682094794SBarry Smith dlens[i] = dlen; 215782094794SBarry Smith } 215882094794SBarry Smith ierr = MatCreate(comm,&M);CHKERRQ(ierr); 215982094794SBarry Smith ierr = MatSetSizes(M,bs*m,bs*nlocal,PETSC_DECIDE,bs*n);CHKERRQ(ierr); 216082094794SBarry Smith ierr = MatSetType(M,((PetscObject)mat)->type_name);CHKERRQ(ierr); 216182094794SBarry Smith ierr = MatMPIBAIJSetPreallocation(M,bs,0,dlens,0,olens);CHKERRQ(ierr); 21628f46ffcaSHong Zhang ierr = MatMPISBAIJSetPreallocation(M,bs,0,dlens,0,olens);CHKERRQ(ierr); 2163eb9baa12SBarry Smith ierr = PetscFree2(dlens,olens);CHKERRQ(ierr); 216482094794SBarry Smith } else { 216582094794SBarry Smith PetscInt ml,nl; 216682094794SBarry Smith 216782094794SBarry Smith M = *newmat; 216882094794SBarry Smith ierr = MatGetLocalSize(M,&ml,&nl);CHKERRQ(ierr); 2169e32f2f54SBarry Smith if (ml != m) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Previous matrix must be same size/layout as request"); 217082094794SBarry Smith ierr = MatZeroEntries(M);CHKERRQ(ierr); 217182094794SBarry Smith /* 217282094794SBarry Smith The next two lines are needed so we may call MatSetValues_MPIAIJ() below directly, 217382094794SBarry Smith rather than the slower MatSetValues(). 217482094794SBarry Smith */ 217582094794SBarry Smith M->was_assembled = PETSC_TRUE; 217682094794SBarry Smith M->assembled = PETSC_FALSE; 217782094794SBarry Smith } 217882094794SBarry Smith ierr = MatSetOption(M,MAT_ROW_ORIENTED,PETSC_FALSE);CHKERRQ(ierr); 217982094794SBarry Smith ierr = MatGetOwnershipRange(M,&rstart,&rend);CHKERRQ(ierr); 218082094794SBarry Smith aij = (Mat_SeqBAIJ*)(Mreuse)->data; 218182094794SBarry Smith ii = aij->i; 218282094794SBarry Smith jj = aij->j; 218382094794SBarry Smith aa = aij->a; 218482094794SBarry Smith for (i=0; i<m; i++) { 218582094794SBarry Smith row = rstart/bs + i; 218682094794SBarry Smith nz = ii[i+1] - ii[i]; 218782094794SBarry Smith cwork = jj; jj += nz; 218875f6568bSJed Brown vwork = aa; aa += nz*bs*bs; 218982094794SBarry Smith ierr = MatSetValuesBlocked_MPIBAIJ(M,1,&row,nz,cwork,vwork,INSERT_VALUES);CHKERRQ(ierr); 219082094794SBarry Smith } 219182094794SBarry Smith 219282094794SBarry Smith ierr = MatAssemblyBegin(M,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 219382094794SBarry Smith ierr = MatAssemblyEnd(M,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 219482094794SBarry Smith *newmat = M; 219582094794SBarry Smith 219682094794SBarry Smith /* save submatrix used in processor for next request */ 219782094794SBarry Smith if (call == MAT_INITIAL_MATRIX) { 219882094794SBarry Smith ierr = PetscObjectCompose((PetscObject)M,"SubMatrix",(PetscObject)Mreuse);CHKERRQ(ierr); 219982094794SBarry Smith ierr = PetscObjectDereference((PetscObject)Mreuse);CHKERRQ(ierr); 220082094794SBarry Smith } 220182094794SBarry Smith PetscFunctionReturn(0); 220282094794SBarry Smith } 220382094794SBarry Smith 220482094794SBarry Smith PetscErrorCode MatPermute_MPIBAIJ(Mat A,IS rowp,IS colp,Mat *B) 220582094794SBarry Smith { 220682094794SBarry Smith MPI_Comm comm,pcomm; 2207a0a83eb5SRémi Lacroix PetscInt clocal_size,nrows; 220882094794SBarry Smith const PetscInt *rows; 2209dbf0e21dSBarry Smith PetscMPIInt size; 2210a0a83eb5SRémi Lacroix IS crowp,lcolp; 221182094794SBarry Smith PetscErrorCode ierr; 221282094794SBarry Smith 221382094794SBarry Smith PetscFunctionBegin; 221482094794SBarry Smith ierr = PetscObjectGetComm((PetscObject)A,&comm);CHKERRQ(ierr); 221582094794SBarry Smith /* make a collective version of 'rowp' */ 221682094794SBarry Smith ierr = PetscObjectGetComm((PetscObject)rowp,&pcomm);CHKERRQ(ierr); 221782094794SBarry Smith if (pcomm==comm) { 221882094794SBarry Smith crowp = rowp; 221982094794SBarry Smith } else { 222082094794SBarry Smith ierr = ISGetSize(rowp,&nrows);CHKERRQ(ierr); 222182094794SBarry Smith ierr = ISGetIndices(rowp,&rows);CHKERRQ(ierr); 222270b3c8c7SBarry Smith ierr = ISCreateGeneral(comm,nrows,rows,PETSC_COPY_VALUES,&crowp);CHKERRQ(ierr); 222382094794SBarry Smith ierr = ISRestoreIndices(rowp,&rows);CHKERRQ(ierr); 222482094794SBarry Smith } 2225a0a83eb5SRémi Lacroix ierr = ISSetPermutation(crowp);CHKERRQ(ierr); 2226a0a83eb5SRémi Lacroix /* make a local version of 'colp' */ 222782094794SBarry Smith ierr = PetscObjectGetComm((PetscObject)colp,&pcomm);CHKERRQ(ierr); 2228dbf0e21dSBarry Smith ierr = MPI_Comm_size(pcomm,&size);CHKERRQ(ierr); 2229dbf0e21dSBarry Smith if (size==1) { 223082094794SBarry Smith lcolp = colp; 223182094794SBarry Smith } else { 223275f6568bSJed Brown ierr = ISAllGather(colp,&lcolp);CHKERRQ(ierr); 223382094794SBarry Smith } 2234dbf0e21dSBarry Smith ierr = ISSetPermutation(lcolp);CHKERRQ(ierr); 223575f6568bSJed Brown /* now we just get the submatrix */ 22367afc1a8bSJed Brown ierr = MatGetLocalSize(A,NULL,&clocal_size);CHKERRQ(ierr); 22377dae84e0SHong Zhang ierr = MatCreateSubMatrix_MPIBAIJ_Private(A,crowp,lcolp,clocal_size,MAT_INITIAL_MATRIX,B);CHKERRQ(ierr); 2238a0a83eb5SRémi Lacroix /* clean up */ 2239a0a83eb5SRémi Lacroix if (pcomm!=comm) { 2240a0a83eb5SRémi Lacroix ierr = ISDestroy(&crowp);CHKERRQ(ierr); 2241a0a83eb5SRémi Lacroix } 2242dbf0e21dSBarry Smith if (size>1) { 22436bf464f9SBarry Smith ierr = ISDestroy(&lcolp);CHKERRQ(ierr); 224482094794SBarry Smith } 224582094794SBarry Smith PetscFunctionReturn(0); 224682094794SBarry Smith } 224782094794SBarry Smith 22487087cfbeSBarry Smith PetscErrorCode MatGetGhosts_MPIBAIJ(Mat mat,PetscInt *nghosts,const PetscInt *ghosts[]) 22498c7482ecSBarry Smith { 22508c7482ecSBarry Smith Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*) mat->data; 22518c7482ecSBarry Smith Mat_SeqBAIJ *B = (Mat_SeqBAIJ*)baij->B->data; 22528c7482ecSBarry Smith 22538c7482ecSBarry Smith PetscFunctionBegin; 225426fbe8dcSKarl Rupp if (nghosts) *nghosts = B->nbs; 225526fbe8dcSKarl Rupp if (ghosts) *ghosts = baij->garray; 22568c7482ecSBarry Smith PetscFunctionReturn(0); 22578c7482ecSBarry Smith } 22588c7482ecSBarry Smith 2259d1adec66SJed Brown PetscErrorCode MatGetSeqNonzeroStructure_MPIBAIJ(Mat A,Mat *newmat) 2260f6d58c54SBarry Smith { 2261f6d58c54SBarry Smith Mat B; 2262f6d58c54SBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 2263f6d58c54SBarry Smith Mat_SeqBAIJ *ad = (Mat_SeqBAIJ*)a->A->data,*bd = (Mat_SeqBAIJ*)a->B->data; 2264f6d58c54SBarry Smith Mat_SeqAIJ *b; 2265f6d58c54SBarry Smith PetscErrorCode ierr; 2266f6d58c54SBarry Smith PetscMPIInt size,rank,*recvcounts = 0,*displs = 0; 2267f6d58c54SBarry Smith PetscInt sendcount,i,*rstarts = A->rmap->range,n,cnt,j,bs = A->rmap->bs; 2268f6d58c54SBarry Smith PetscInt m,*garray = a->garray,*lens,*jsendbuf,*a_jsendbuf,*b_jsendbuf; 2269f6d58c54SBarry Smith 2270f6d58c54SBarry Smith PetscFunctionBegin; 2271ce94432eSBarry Smith ierr = MPI_Comm_size(PetscObjectComm((PetscObject)A),&size);CHKERRQ(ierr); 2272ce94432eSBarry Smith ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)A),&rank);CHKERRQ(ierr); 2273f6d58c54SBarry Smith 2274f6d58c54SBarry Smith /* ---------------------------------------------------------------- 2275f6d58c54SBarry Smith Tell every processor the number of nonzeros per row 2276f6d58c54SBarry Smith */ 2277854ce69bSBarry Smith ierr = PetscMalloc1(A->rmap->N/bs,&lens);CHKERRQ(ierr); 2278f6d58c54SBarry Smith for (i=A->rmap->rstart/bs; i<A->rmap->rend/bs; i++) { 2279f6d58c54SBarry Smith lens[i] = ad->i[i-A->rmap->rstart/bs+1] - ad->i[i-A->rmap->rstart/bs] + bd->i[i-A->rmap->rstart/bs+1] - bd->i[i-A->rmap->rstart/bs]; 2280f6d58c54SBarry Smith } 2281785e854fSJed Brown ierr = PetscMalloc1(2*size,&recvcounts);CHKERRQ(ierr); 2282f6d58c54SBarry Smith displs = recvcounts + size; 2283f6d58c54SBarry Smith for (i=0; i<size; i++) { 2284f6d58c54SBarry Smith recvcounts[i] = A->rmap->range[i+1]/bs - A->rmap->range[i]/bs; 2285f6d58c54SBarry Smith displs[i] = A->rmap->range[i]/bs; 2286f6d58c54SBarry Smith } 2287f6d58c54SBarry Smith #if defined(PETSC_HAVE_MPI_IN_PLACE) 2288ce94432eSBarry Smith ierr = MPI_Allgatherv(MPI_IN_PLACE,0,MPI_DATATYPE_NULL,lens,recvcounts,displs,MPIU_INT,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 2289f6d58c54SBarry Smith #else 22903d3eaba7SBarry Smith sendcount = A->rmap->rend/bs - A->rmap->rstart/bs; 2291ce94432eSBarry Smith ierr = MPI_Allgatherv(lens+A->rmap->rstart/bs,sendcount,MPIU_INT,lens,recvcounts,displs,MPIU_INT,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 2292f6d58c54SBarry Smith #endif 2293f6d58c54SBarry Smith /* --------------------------------------------------------------- 2294f6d58c54SBarry Smith Create the sequential matrix of the same type as the local block diagonal 2295f6d58c54SBarry Smith */ 2296f6d58c54SBarry Smith ierr = MatCreate(PETSC_COMM_SELF,&B);CHKERRQ(ierr); 2297f6d58c54SBarry Smith ierr = MatSetSizes(B,A->rmap->N/bs,A->cmap->N/bs,PETSC_DETERMINE,PETSC_DETERMINE);CHKERRQ(ierr); 2298f6d58c54SBarry Smith ierr = MatSetType(B,MATSEQAIJ);CHKERRQ(ierr); 2299f6d58c54SBarry Smith ierr = MatSeqAIJSetPreallocation(B,0,lens);CHKERRQ(ierr); 2300f6d58c54SBarry Smith b = (Mat_SeqAIJ*)B->data; 2301f6d58c54SBarry Smith 2302f6d58c54SBarry Smith /*-------------------------------------------------------------------- 2303f6d58c54SBarry Smith Copy my part of matrix column indices over 2304f6d58c54SBarry Smith */ 2305f6d58c54SBarry Smith sendcount = ad->nz + bd->nz; 2306f6d58c54SBarry Smith jsendbuf = b->j + b->i[rstarts[rank]/bs]; 2307f6d58c54SBarry Smith a_jsendbuf = ad->j; 2308f6d58c54SBarry Smith b_jsendbuf = bd->j; 2309f6d58c54SBarry Smith n = A->rmap->rend/bs - A->rmap->rstart/bs; 2310f6d58c54SBarry Smith cnt = 0; 2311f6d58c54SBarry Smith for (i=0; i<n; i++) { 2312f6d58c54SBarry Smith 2313f6d58c54SBarry Smith /* put in lower diagonal portion */ 2314f6d58c54SBarry Smith m = bd->i[i+1] - bd->i[i]; 2315f6d58c54SBarry Smith while (m > 0) { 2316f6d58c54SBarry Smith /* is it above diagonal (in bd (compressed) numbering) */ 2317f6d58c54SBarry Smith if (garray[*b_jsendbuf] > A->rmap->rstart/bs + i) break; 2318f6d58c54SBarry Smith jsendbuf[cnt++] = garray[*b_jsendbuf++]; 2319f6d58c54SBarry Smith m--; 2320f6d58c54SBarry Smith } 2321f6d58c54SBarry Smith 2322f6d58c54SBarry Smith /* put in diagonal portion */ 2323f6d58c54SBarry Smith for (j=ad->i[i]; j<ad->i[i+1]; j++) { 2324f6d58c54SBarry Smith jsendbuf[cnt++] = A->rmap->rstart/bs + *a_jsendbuf++; 2325f6d58c54SBarry Smith } 2326f6d58c54SBarry Smith 2327f6d58c54SBarry Smith /* put in upper diagonal portion */ 2328f6d58c54SBarry Smith while (m-- > 0) { 2329f6d58c54SBarry Smith jsendbuf[cnt++] = garray[*b_jsendbuf++]; 2330f6d58c54SBarry Smith } 2331f6d58c54SBarry Smith } 2332e32f2f54SBarry Smith if (cnt != sendcount) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Corrupted PETSc matrix: nz given %D actual nz %D",sendcount,cnt); 2333f6d58c54SBarry Smith 2334f6d58c54SBarry Smith /*-------------------------------------------------------------------- 2335f6d58c54SBarry Smith Gather all column indices to all processors 2336f6d58c54SBarry Smith */ 2337f6d58c54SBarry Smith for (i=0; i<size; i++) { 2338f6d58c54SBarry Smith recvcounts[i] = 0; 2339f6d58c54SBarry Smith for (j=A->rmap->range[i]/bs; j<A->rmap->range[i+1]/bs; j++) { 2340f6d58c54SBarry Smith recvcounts[i] += lens[j]; 2341f6d58c54SBarry Smith } 2342f6d58c54SBarry Smith } 2343f6d58c54SBarry Smith displs[0] = 0; 2344f6d58c54SBarry Smith for (i=1; i<size; i++) { 2345f6d58c54SBarry Smith displs[i] = displs[i-1] + recvcounts[i-1]; 2346f6d58c54SBarry Smith } 2347f6d58c54SBarry Smith #if defined(PETSC_HAVE_MPI_IN_PLACE) 2348ce94432eSBarry Smith ierr = MPI_Allgatherv(MPI_IN_PLACE,0,MPI_DATATYPE_NULL,b->j,recvcounts,displs,MPIU_INT,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 2349f6d58c54SBarry Smith #else 2350ce94432eSBarry Smith ierr = MPI_Allgatherv(jsendbuf,sendcount,MPIU_INT,b->j,recvcounts,displs,MPIU_INT,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 2351f6d58c54SBarry Smith #endif 2352f6d58c54SBarry Smith /*-------------------------------------------------------------------- 2353f6d58c54SBarry Smith Assemble the matrix into useable form (note numerical values not yet set) 2354f6d58c54SBarry Smith */ 2355f6d58c54SBarry Smith /* set the b->ilen (length of each row) values */ 2356f6d58c54SBarry Smith ierr = PetscMemcpy(b->ilen,lens,(A->rmap->N/bs)*sizeof(PetscInt));CHKERRQ(ierr); 2357f6d58c54SBarry Smith /* set the b->i indices */ 2358f6d58c54SBarry Smith b->i[0] = 0; 2359f6d58c54SBarry Smith for (i=1; i<=A->rmap->N/bs; i++) { 2360f6d58c54SBarry Smith b->i[i] = b->i[i-1] + lens[i-1]; 2361f6d58c54SBarry Smith } 2362f6d58c54SBarry Smith ierr = PetscFree(lens);CHKERRQ(ierr); 2363f6d58c54SBarry Smith ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 2364f6d58c54SBarry Smith ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 2365f6d58c54SBarry Smith ierr = PetscFree(recvcounts);CHKERRQ(ierr); 2366f6d58c54SBarry Smith 2367f6d58c54SBarry Smith if (A->symmetric) { 2368f6d58c54SBarry Smith ierr = MatSetOption(B,MAT_SYMMETRIC,PETSC_TRUE);CHKERRQ(ierr); 2369f6d58c54SBarry Smith } else if (A->hermitian) { 2370f6d58c54SBarry Smith ierr = MatSetOption(B,MAT_HERMITIAN,PETSC_TRUE);CHKERRQ(ierr); 2371f6d58c54SBarry Smith } else if (A->structurally_symmetric) { 2372f6d58c54SBarry Smith ierr = MatSetOption(B,MAT_STRUCTURALLY_SYMMETRIC,PETSC_TRUE);CHKERRQ(ierr); 2373f6d58c54SBarry Smith } 2374f6d58c54SBarry Smith *newmat = B; 2375f6d58c54SBarry Smith PetscFunctionReturn(0); 2376f6d58c54SBarry Smith } 2377f6d58c54SBarry Smith 2378b1a666ecSBarry Smith PetscErrorCode MatSOR_MPIBAIJ(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx) 2379b1a666ecSBarry Smith { 2380b1a666ecSBarry Smith Mat_MPIBAIJ *mat = (Mat_MPIBAIJ*)matin->data; 2381b1a666ecSBarry Smith PetscErrorCode ierr; 2382b1a666ecSBarry Smith Vec bb1 = 0; 2383b1a666ecSBarry Smith 2384b1a666ecSBarry Smith PetscFunctionBegin; 2385b1a666ecSBarry Smith if (flag == SOR_APPLY_UPPER) { 2386b1a666ecSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr); 2387b1a666ecSBarry Smith PetscFunctionReturn(0); 2388b1a666ecSBarry Smith } 2389b1a666ecSBarry Smith 23904e980039SJed Brown if (its > 1 || ~flag & SOR_ZERO_INITIAL_GUESS) { 23914e980039SJed Brown ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr); 23924e980039SJed Brown } 23934e980039SJed Brown 2394b1a666ecSBarry Smith if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP) { 2395b1a666ecSBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 2396b1a666ecSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr); 2397b1a666ecSBarry Smith its--; 2398b1a666ecSBarry Smith } 2399b1a666ecSBarry Smith 2400b1a666ecSBarry Smith while (its--) { 2401b1a666ecSBarry Smith ierr = VecScatterBegin(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 2402b1a666ecSBarry Smith ierr = VecScatterEnd(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 2403b1a666ecSBarry Smith 2404b1a666ecSBarry Smith /* update rhs: bb1 = bb - B*x */ 2405b1a666ecSBarry Smith ierr = VecScale(mat->lvec,-1.0);CHKERRQ(ierr); 2406b1a666ecSBarry Smith ierr = (*mat->B->ops->multadd)(mat->B,mat->lvec,bb,bb1);CHKERRQ(ierr); 2407b1a666ecSBarry Smith 2408b1a666ecSBarry Smith /* local sweep */ 2409b1a666ecSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,1,xx);CHKERRQ(ierr); 2410b1a666ecSBarry Smith } 2411b1a666ecSBarry Smith } else if (flag & SOR_LOCAL_FORWARD_SWEEP) { 2412b1a666ecSBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 2413b1a666ecSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr); 2414b1a666ecSBarry Smith its--; 2415b1a666ecSBarry Smith } 2416b1a666ecSBarry Smith while (its--) { 2417b1a666ecSBarry Smith ierr = VecScatterBegin(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 2418b1a666ecSBarry Smith ierr = VecScatterEnd(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 2419b1a666ecSBarry Smith 2420b1a666ecSBarry Smith /* update rhs: bb1 = bb - B*x */ 2421b1a666ecSBarry Smith ierr = VecScale(mat->lvec,-1.0);CHKERRQ(ierr); 2422b1a666ecSBarry Smith ierr = (*mat->B->ops->multadd)(mat->B,mat->lvec,bb,bb1);CHKERRQ(ierr); 2423b1a666ecSBarry Smith 2424b1a666ecSBarry Smith /* local sweep */ 2425b1a666ecSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_FORWARD_SWEEP,fshift,lits,1,xx);CHKERRQ(ierr); 2426b1a666ecSBarry Smith } 2427b1a666ecSBarry Smith } else if (flag & SOR_LOCAL_BACKWARD_SWEEP) { 2428b1a666ecSBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 2429b1a666ecSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr); 2430b1a666ecSBarry Smith its--; 2431b1a666ecSBarry Smith } 2432b1a666ecSBarry Smith while (its--) { 2433b1a666ecSBarry Smith ierr = VecScatterBegin(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 2434b1a666ecSBarry Smith ierr = VecScatterEnd(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 2435b1a666ecSBarry Smith 2436b1a666ecSBarry Smith /* update rhs: bb1 = bb - B*x */ 2437b1a666ecSBarry Smith ierr = VecScale(mat->lvec,-1.0);CHKERRQ(ierr); 2438b1a666ecSBarry Smith ierr = (*mat->B->ops->multadd)(mat->B,mat->lvec,bb,bb1);CHKERRQ(ierr); 2439b1a666ecSBarry Smith 2440b1a666ecSBarry Smith /* local sweep */ 2441b1a666ecSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_BACKWARD_SWEEP,fshift,lits,1,xx);CHKERRQ(ierr); 2442b1a666ecSBarry Smith } 2443ce94432eSBarry Smith } else SETERRQ(PetscObjectComm((PetscObject)matin),PETSC_ERR_SUP,"Parallel version of SOR requested not supported"); 2444b1a666ecSBarry Smith 24456bf464f9SBarry Smith ierr = VecDestroy(&bb1);CHKERRQ(ierr); 2446b1a666ecSBarry Smith PetscFunctionReturn(0); 2447b1a666ecSBarry Smith } 2448b1a666ecSBarry Smith 244947f7623dSRémi Lacroix PetscErrorCode MatGetColumnNorms_MPIBAIJ(Mat A,NormType type,PetscReal *norms) 245047f7623dSRémi Lacroix { 245147f7623dSRémi Lacroix PetscErrorCode ierr; 245247f7623dSRémi Lacroix Mat_MPIBAIJ *aij = (Mat_MPIBAIJ*)A->data; 245347f7623dSRémi Lacroix PetscInt N,i,*garray = aij->garray; 245447f7623dSRémi Lacroix PetscInt ib,jb,bs = A->rmap->bs; 245547f7623dSRémi Lacroix Mat_SeqBAIJ *a_aij = (Mat_SeqBAIJ*) aij->A->data; 245647f7623dSRémi Lacroix MatScalar *a_val = a_aij->a; 245747f7623dSRémi Lacroix Mat_SeqBAIJ *b_aij = (Mat_SeqBAIJ*) aij->B->data; 245847f7623dSRémi Lacroix MatScalar *b_val = b_aij->a; 245947f7623dSRémi Lacroix PetscReal *work; 246047f7623dSRémi Lacroix 246147f7623dSRémi Lacroix PetscFunctionBegin; 246247f7623dSRémi Lacroix ierr = MatGetSize(A,NULL,&N);CHKERRQ(ierr); 24631795a4d1SJed Brown ierr = PetscCalloc1(N,&work);CHKERRQ(ierr); 246447f7623dSRémi Lacroix if (type == NORM_2) { 246547f7623dSRémi Lacroix for (i=a_aij->i[0]; i<a_aij->i[aij->A->rmap->n/bs]; i++) { 246647f7623dSRémi Lacroix for (jb=0; jb<bs; jb++) { 246747f7623dSRémi Lacroix for (ib=0; ib<bs; ib++) { 246847f7623dSRémi Lacroix work[A->cmap->rstart + a_aij->j[i] * bs + jb] += PetscAbsScalar(*a_val * *a_val); 246947f7623dSRémi Lacroix a_val++; 247047f7623dSRémi Lacroix } 247147f7623dSRémi Lacroix } 247247f7623dSRémi Lacroix } 247347f7623dSRémi Lacroix for (i=b_aij->i[0]; i<b_aij->i[aij->B->rmap->n/bs]; i++) { 247447f7623dSRémi Lacroix for (jb=0; jb<bs; jb++) { 247547f7623dSRémi Lacroix for (ib=0; ib<bs; ib++) { 247647f7623dSRémi Lacroix work[garray[b_aij->j[i]] * bs + jb] += PetscAbsScalar(*b_val * *b_val); 247747f7623dSRémi Lacroix b_val++; 247847f7623dSRémi Lacroix } 247947f7623dSRémi Lacroix } 248047f7623dSRémi Lacroix } 248147f7623dSRémi Lacroix } else if (type == NORM_1) { 248247f7623dSRémi Lacroix for (i=a_aij->i[0]; i<a_aij->i[aij->A->rmap->n/bs]; i++) { 248347f7623dSRémi Lacroix for (jb=0; jb<bs; jb++) { 248447f7623dSRémi Lacroix for (ib=0; ib<bs; ib++) { 248547f7623dSRémi Lacroix work[A->cmap->rstart + a_aij->j[i] * bs + jb] += PetscAbsScalar(*a_val); 248647f7623dSRémi Lacroix a_val++; 248747f7623dSRémi Lacroix } 248847f7623dSRémi Lacroix } 248947f7623dSRémi Lacroix } 249047f7623dSRémi Lacroix for (i=b_aij->i[0]; i<b_aij->i[aij->B->rmap->n/bs]; i++) { 249147f7623dSRémi Lacroix for (jb=0; jb<bs; jb++) { 249247f7623dSRémi Lacroix for (ib=0; ib<bs; ib++) { 249347f7623dSRémi Lacroix work[garray[b_aij->j[i]] * bs + jb] += PetscAbsScalar(*b_val); 249447f7623dSRémi Lacroix b_val++; 249547f7623dSRémi Lacroix } 249647f7623dSRémi Lacroix } 249747f7623dSRémi Lacroix } 249847f7623dSRémi Lacroix } else if (type == NORM_INFINITY) { 249947f7623dSRémi Lacroix for (i=a_aij->i[0]; i<a_aij->i[aij->A->rmap->n/bs]; i++) { 250047f7623dSRémi Lacroix for (jb=0; jb<bs; jb++) { 250147f7623dSRémi Lacroix for (ib=0; ib<bs; ib++) { 250247f7623dSRémi Lacroix int col = A->cmap->rstart + a_aij->j[i] * bs + jb; 250347f7623dSRémi Lacroix work[col] = PetscMax(PetscAbsScalar(*a_val), work[col]); 250447f7623dSRémi Lacroix a_val++; 250547f7623dSRémi Lacroix } 250647f7623dSRémi Lacroix } 250747f7623dSRémi Lacroix } 250847f7623dSRémi Lacroix for (i=b_aij->i[0]; i<b_aij->i[aij->B->rmap->n/bs]; i++) { 250947f7623dSRémi Lacroix for (jb=0; jb<bs; jb++) { 251047f7623dSRémi Lacroix for (ib=0; ib<bs; ib++) { 251147f7623dSRémi Lacroix int col = garray[b_aij->j[i]] * bs + jb; 251247f7623dSRémi Lacroix work[col] = PetscMax(PetscAbsScalar(*b_val), work[col]); 251347f7623dSRémi Lacroix b_val++; 251447f7623dSRémi Lacroix } 251547f7623dSRémi Lacroix } 251647f7623dSRémi Lacroix } 251747f7623dSRémi Lacroix } else SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ARG_WRONG,"Unknown NormType"); 251847f7623dSRémi Lacroix if (type == NORM_INFINITY) { 2519b2566f29SBarry Smith ierr = MPIU_Allreduce(work,norms,N,MPIU_REAL,MPIU_MAX,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 252047f7623dSRémi Lacroix } else { 2521b2566f29SBarry Smith ierr = MPIU_Allreduce(work,norms,N,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 252247f7623dSRémi Lacroix } 252347f7623dSRémi Lacroix ierr = PetscFree(work);CHKERRQ(ierr); 252447f7623dSRémi Lacroix if (type == NORM_2) { 252547f7623dSRémi Lacroix for (i=0; i<N; i++) norms[i] = PetscSqrtReal(norms[i]); 252647f7623dSRémi Lacroix } 252747f7623dSRémi Lacroix PetscFunctionReturn(0); 252847f7623dSRémi Lacroix } 252947f7623dSRémi Lacroix 2530713ccfa9SJed Brown PetscErrorCode MatInvertBlockDiagonal_MPIBAIJ(Mat A,const PetscScalar **values) 2531bbead8a2SBarry Smith { 2532bbead8a2SBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ*) A->data; 2533bbead8a2SBarry Smith PetscErrorCode ierr; 2534bbead8a2SBarry Smith 2535bbead8a2SBarry Smith PetscFunctionBegin; 2536bbead8a2SBarry Smith ierr = MatInvertBlockDiagonal(a->A,values);CHKERRQ(ierr); 25377b6c816cSBarry Smith A->factorerrortype = a->A->factorerrortype; 25387b6c816cSBarry Smith A->factorerror_zeropivot_value = a->A->factorerror_zeropivot_value; 25397b6c816cSBarry Smith A->factorerror_zeropivot_row = a->A->factorerror_zeropivot_row; 2540bbead8a2SBarry Smith PetscFunctionReturn(0); 2541bbead8a2SBarry Smith } 2542bbead8a2SBarry Smith 25437d68702bSBarry Smith PetscErrorCode MatShift_MPIBAIJ(Mat Y,PetscScalar a) 25447d68702bSBarry Smith { 25457d68702bSBarry Smith PetscErrorCode ierr; 25467d68702bSBarry Smith Mat_MPIBAIJ *maij = (Mat_MPIBAIJ*)Y->data; 25476f33a894SBarry Smith Mat_SeqBAIJ *aij = (Mat_SeqBAIJ*)maij->A->data; 25487d68702bSBarry Smith 25497d68702bSBarry Smith PetscFunctionBegin; 25506f33a894SBarry Smith if (!Y->preallocated) { 25517d68702bSBarry Smith ierr = MatMPIBAIJSetPreallocation(Y,Y->rmap->bs,1,NULL,0,NULL);CHKERRQ(ierr); 25526f33a894SBarry Smith } else if (!aij->nz) { 2553b83222d8SBarry Smith PetscInt nonew = aij->nonew; 25546f33a894SBarry Smith ierr = MatSeqBAIJSetPreallocation(maij->A,Y->rmap->bs,1,NULL);CHKERRQ(ierr); 2555b83222d8SBarry Smith aij->nonew = nonew; 25567d68702bSBarry Smith } 25577d68702bSBarry Smith ierr = MatShift_Basic(Y,a);CHKERRQ(ierr); 25587d68702bSBarry Smith PetscFunctionReturn(0); 25597d68702bSBarry Smith } 25608c7482ecSBarry Smith 25613b49f96aSBarry Smith PetscErrorCode MatMissingDiagonal_MPIBAIJ(Mat A,PetscBool *missing,PetscInt *d) 25623b49f96aSBarry Smith { 25633b49f96aSBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 25643b49f96aSBarry Smith PetscErrorCode ierr; 25653b49f96aSBarry Smith 25663b49f96aSBarry Smith PetscFunctionBegin; 25673b49f96aSBarry Smith if (A->rmap->n != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only works for square matrices"); 25683b49f96aSBarry Smith ierr = MatMissingDiagonal(a->A,missing,d);CHKERRQ(ierr); 25693b49f96aSBarry Smith if (d) { 25703b49f96aSBarry Smith PetscInt rstart; 25713b49f96aSBarry Smith ierr = MatGetOwnershipRange(A,&rstart,NULL);CHKERRQ(ierr); 25723b49f96aSBarry Smith *d += rstart/A->rmap->bs; 25733b49f96aSBarry Smith 25743b49f96aSBarry Smith } 25753b49f96aSBarry Smith PetscFunctionReturn(0); 25763b49f96aSBarry Smith } 25773b49f96aSBarry Smith 2578a5b7ff6bSBarry Smith PetscErrorCode MatGetDiagonalBlock_MPIBAIJ(Mat A,Mat *a) 2579a5b7ff6bSBarry Smith { 2580a5b7ff6bSBarry Smith PetscFunctionBegin; 2581a5b7ff6bSBarry Smith *a = ((Mat_MPIBAIJ*)A->data)->A; 2582a5b7ff6bSBarry Smith PetscFunctionReturn(0); 2583a5b7ff6bSBarry Smith } 2584a5b7ff6bSBarry Smith 258579bdfe76SSatish Balay /* -------------------------------------------------------------------*/ 25863964eb88SJed Brown static struct _MatOps MatOps_Values = {MatSetValues_MPIBAIJ, 2587cc2dc46cSBarry Smith MatGetRow_MPIBAIJ, 2588cc2dc46cSBarry Smith MatRestoreRow_MPIBAIJ, 2589cc2dc46cSBarry Smith MatMult_MPIBAIJ, 259097304618SKris Buschelman /* 4*/ MatMultAdd_MPIBAIJ, 25917c922b88SBarry Smith MatMultTranspose_MPIBAIJ, 25927c922b88SBarry Smith MatMultTransposeAdd_MPIBAIJ, 2593cc2dc46cSBarry Smith 0, 2594cc2dc46cSBarry Smith 0, 2595cc2dc46cSBarry Smith 0, 259697304618SKris Buschelman /*10*/ 0, 2597cc2dc46cSBarry Smith 0, 2598cc2dc46cSBarry Smith 0, 2599b1a666ecSBarry Smith MatSOR_MPIBAIJ, 2600cc2dc46cSBarry Smith MatTranspose_MPIBAIJ, 260197304618SKris Buschelman /*15*/ MatGetInfo_MPIBAIJ, 26027fc3c18eSBarry Smith MatEqual_MPIBAIJ, 2603cc2dc46cSBarry Smith MatGetDiagonal_MPIBAIJ, 2604cc2dc46cSBarry Smith MatDiagonalScale_MPIBAIJ, 2605cc2dc46cSBarry Smith MatNorm_MPIBAIJ, 260697304618SKris Buschelman /*20*/ MatAssemblyBegin_MPIBAIJ, 2607cc2dc46cSBarry Smith MatAssemblyEnd_MPIBAIJ, 2608cc2dc46cSBarry Smith MatSetOption_MPIBAIJ, 2609cc2dc46cSBarry Smith MatZeroEntries_MPIBAIJ, 2610d519adbfSMatthew Knepley /*24*/ MatZeroRows_MPIBAIJ, 2611cc2dc46cSBarry Smith 0, 2612cc2dc46cSBarry Smith 0, 2613cc2dc46cSBarry Smith 0, 2614cc2dc46cSBarry Smith 0, 26154994cf47SJed Brown /*29*/ MatSetUp_MPIBAIJ, 2616273d9f13SBarry Smith 0, 2617cc2dc46cSBarry Smith 0, 2618a5b7ff6bSBarry Smith MatGetDiagonalBlock_MPIBAIJ, 2619cc2dc46cSBarry Smith 0, 2620d519adbfSMatthew Knepley /*34*/ MatDuplicate_MPIBAIJ, 2621cc2dc46cSBarry Smith 0, 2622cc2dc46cSBarry Smith 0, 2623cc2dc46cSBarry Smith 0, 2624cc2dc46cSBarry Smith 0, 2625d519adbfSMatthew Knepley /*39*/ MatAXPY_MPIBAIJ, 26267dae84e0SHong Zhang MatCreateSubMatrices_MPIBAIJ, 2627cc2dc46cSBarry Smith MatIncreaseOverlap_MPIBAIJ, 2628cc2dc46cSBarry Smith MatGetValues_MPIBAIJ, 26293c896bc6SHong Zhang MatCopy_MPIBAIJ, 2630d519adbfSMatthew Knepley /*44*/ 0, 2631cc2dc46cSBarry Smith MatScale_MPIBAIJ, 26327d68702bSBarry Smith MatShift_MPIBAIJ, 2633cc2dc46cSBarry Smith 0, 26346f0a72daSMatthew G. Knepley MatZeroRowsColumns_MPIBAIJ, 2635f73d5cc4SBarry Smith /*49*/ 0, 2636cc2dc46cSBarry Smith 0, 2637cc2dc46cSBarry Smith 0, 2638cc2dc46cSBarry Smith 0, 2639cc2dc46cSBarry Smith 0, 264093dfae19SHong Zhang /*54*/ MatFDColoringCreate_MPIXAIJ, 2641cc2dc46cSBarry Smith 0, 2642cc2dc46cSBarry Smith MatSetUnfactored_MPIBAIJ, 264382094794SBarry Smith MatPermute_MPIBAIJ, 2644cc2dc46cSBarry Smith MatSetValuesBlocked_MPIBAIJ, 26457dae84e0SHong Zhang /*59*/ MatCreateSubMatrix_MPIBAIJ, 2646f14a1c24SBarry Smith MatDestroy_MPIBAIJ, 2647f14a1c24SBarry Smith MatView_MPIBAIJ, 2648357abbc8SBarry Smith 0, 26497843d17aSBarry Smith 0, 2650d519adbfSMatthew Knepley /*64*/ 0, 26517843d17aSBarry Smith 0, 26527843d17aSBarry Smith 0, 26537843d17aSBarry Smith 0, 26547843d17aSBarry Smith 0, 2655d519adbfSMatthew Knepley /*69*/ MatGetRowMaxAbs_MPIBAIJ, 26567843d17aSBarry Smith 0, 265797304618SKris Buschelman 0, 265897304618SKris Buschelman 0, 265997304618SKris Buschelman 0, 2660d519adbfSMatthew Knepley /*74*/ 0, 2661f6d58c54SBarry Smith MatFDColoringApply_BAIJ, 266297304618SKris Buschelman 0, 266397304618SKris Buschelman 0, 266497304618SKris Buschelman 0, 2665d519adbfSMatthew Knepley /*79*/ 0, 266697304618SKris Buschelman 0, 266797304618SKris Buschelman 0, 266897304618SKris Buschelman 0, 26695bba2384SShri Abhyankar MatLoad_MPIBAIJ, 2670d519adbfSMatthew Knepley /*84*/ 0, 2671865e5f61SKris Buschelman 0, 2672865e5f61SKris Buschelman 0, 2673865e5f61SKris Buschelman 0, 2674865e5f61SKris Buschelman 0, 2675d519adbfSMatthew Knepley /*89*/ 0, 2676865e5f61SKris Buschelman 0, 2677865e5f61SKris Buschelman 0, 2678865e5f61SKris Buschelman 0, 2679865e5f61SKris Buschelman 0, 2680d519adbfSMatthew Knepley /*94*/ 0, 2681865e5f61SKris Buschelman 0, 2682865e5f61SKris Buschelman 0, 268399cafbc1SBarry Smith 0, 268499cafbc1SBarry Smith 0, 2685d519adbfSMatthew Knepley /*99*/ 0, 268699cafbc1SBarry Smith 0, 268799cafbc1SBarry Smith 0, 268899cafbc1SBarry Smith 0, 268999cafbc1SBarry Smith 0, 2690d519adbfSMatthew Knepley /*104*/0, 269199cafbc1SBarry Smith MatRealPart_MPIBAIJ, 26928c7482ecSBarry Smith MatImaginaryPart_MPIBAIJ, 26938c7482ecSBarry Smith 0, 26948c7482ecSBarry Smith 0, 2695d519adbfSMatthew Knepley /*109*/0, 26968c7482ecSBarry Smith 0, 26978c7482ecSBarry Smith 0, 26988c7482ecSBarry Smith 0, 26993b49f96aSBarry Smith MatMissingDiagonal_MPIBAIJ, 2700d1adec66SJed Brown /*114*/MatGetSeqNonzeroStructure_MPIBAIJ, 27018c7482ecSBarry Smith 0, 27024683f7a4SShri Abhyankar MatGetGhosts_MPIBAIJ, 27034683f7a4SShri Abhyankar 0, 27044683f7a4SShri Abhyankar 0, 27054683f7a4SShri Abhyankar /*119*/0, 27064683f7a4SShri Abhyankar 0, 27074683f7a4SShri Abhyankar 0, 2708bbead8a2SBarry Smith 0, 2709e8271787SHong Zhang MatGetMultiProcBlock_MPIBAIJ, 2710bbead8a2SBarry Smith /*124*/0, 271147f7623dSRémi Lacroix MatGetColumnNorms_MPIBAIJ, 27123964eb88SJed Brown MatInvertBlockDiagonal_MPIBAIJ, 27133964eb88SJed Brown 0, 27143964eb88SJed Brown 0, 27153964eb88SJed Brown /*129*/ 0, 27163964eb88SJed Brown 0, 27173964eb88SJed Brown 0, 27183964eb88SJed Brown 0, 27193964eb88SJed Brown 0, 27203964eb88SJed Brown /*134*/ 0, 27213964eb88SJed Brown 0, 27223964eb88SJed Brown 0, 27233964eb88SJed Brown 0, 27243964eb88SJed Brown 0, 272546533700Sstefano_zampini /*139*/ MatSetBlockSizes_Default, 2726f9426fe0SMark Adams 0, 27271919a2e2SJed Brown 0, 2728bdf6f3fcSHong Zhang MatFDColoringSetUp_MPIXAIJ, 2729bdf6f3fcSHong Zhang 0, 2730bdf6f3fcSHong Zhang /*144*/MatCreateMPIMatConcatenateSeqMat_MPIBAIJ 27318c7482ecSBarry Smith }; 273279bdfe76SSatish Balay 273379bdfe76SSatish Balay 2734cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIBAIJ_MPISBAIJ(Mat,MatType,MatReuse,Mat*); 2735c9225affSStefano Zampini PETSC_INTERN PetscErrorCode MatConvert_XAIJ_IS(Mat,MatType,MatReuse,Mat*); 2736d94109b8SHong Zhang 2737cf12db73SBarry Smith PetscErrorCode MatMPIBAIJSetPreallocationCSR_MPIBAIJ(Mat B,PetscInt bs,const PetscInt ii[],const PetscInt jj[],const PetscScalar V[]) 2738aac34f13SBarry Smith { 2739b8d659d7SLisandro Dalcin PetscInt m,rstart,cstart,cend; 274037cd3c0dSBarry Smith PetscInt i,j,dlen,olen,nz,nz_max=0,*d_nnz=0,*o_nnz=0; 2741b8d659d7SLisandro Dalcin const PetscInt *JJ =0; 2742b8d659d7SLisandro Dalcin PetscScalar *values=0; 2743d47bf9aaSJed Brown PetscBool roworiented = ((Mat_MPIBAIJ*)B->data)->roworiented; 2744aac34f13SBarry Smith PetscErrorCode ierr; 2745aac34f13SBarry Smith 2746aac34f13SBarry Smith PetscFunctionBegin; 274726283091SBarry Smith ierr = PetscLayoutSetBlockSize(B->rmap,bs);CHKERRQ(ierr); 274826283091SBarry Smith ierr = PetscLayoutSetBlockSize(B->cmap,bs);CHKERRQ(ierr); 274926283091SBarry Smith ierr = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr); 275026283091SBarry Smith ierr = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr); 2751e02043d6SBarry Smith ierr = PetscLayoutGetBlockSize(B->rmap,&bs);CHKERRQ(ierr); 2752d0f46423SBarry Smith m = B->rmap->n/bs; 2753d0f46423SBarry Smith rstart = B->rmap->rstart/bs; 2754d0f46423SBarry Smith cstart = B->cmap->rstart/bs; 2755d0f46423SBarry Smith cend = B->cmap->rend/bs; 2756b8d659d7SLisandro Dalcin 2757e32f2f54SBarry Smith if (ii[0]) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"ii[0] must be 0 but it is %D",ii[0]); 2758dcca6d9dSJed Brown ierr = PetscMalloc2(m,&d_nnz,m,&o_nnz);CHKERRQ(ierr); 2759aac34f13SBarry Smith for (i=0; i<m; i++) { 2760cf12db73SBarry Smith nz = ii[i+1] - ii[i]; 2761e32f2f54SBarry Smith if (nz < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Local row %D has a negative number of columns %D",i,nz); 2762b8d659d7SLisandro Dalcin nz_max = PetscMax(nz_max,nz); 276337cd3c0dSBarry Smith dlen = 0; 276437cd3c0dSBarry Smith olen = 0; 2765cf12db73SBarry Smith JJ = jj + ii[i]; 2766b8d659d7SLisandro Dalcin for (j=0; j<nz; j++) { 276737cd3c0dSBarry Smith if (*JJ < cstart || *JJ >= cend) olen++; 276837cd3c0dSBarry Smith else dlen++; 2769aac34f13SBarry Smith JJ++; 2770aac34f13SBarry Smith } 277137cd3c0dSBarry Smith d_nnz[i] = dlen; 277237cd3c0dSBarry Smith o_nnz[i] = olen; 2773aac34f13SBarry Smith } 2774aac34f13SBarry Smith ierr = MatMPIBAIJSetPreallocation(B,bs,0,d_nnz,0,o_nnz);CHKERRQ(ierr); 2775fca92195SBarry Smith ierr = PetscFree2(d_nnz,o_nnz);CHKERRQ(ierr); 2776aac34f13SBarry Smith 2777b8d659d7SLisandro Dalcin values = (PetscScalar*)V; 2778b8d659d7SLisandro Dalcin if (!values) { 277937cd3c0dSBarry Smith ierr = PetscCalloc1(bs*bs*nz_max,&values);CHKERRQ(ierr); 2780b8d659d7SLisandro Dalcin } 2781b8d659d7SLisandro Dalcin for (i=0; i<m; i++) { 2782b8d659d7SLisandro Dalcin PetscInt row = i + rstart; 2783cf12db73SBarry Smith PetscInt ncols = ii[i+1] - ii[i]; 2784cf12db73SBarry Smith const PetscInt *icols = jj + ii[i]; 27853adadaf3SJed Brown if (!roworiented) { /* block ordering matches the non-nested layout of MatSetValues so we can insert entire rows */ 2786cf12db73SBarry Smith const PetscScalar *svals = values + (V ? (bs*bs*ii[i]) : 0); 2787b8d659d7SLisandro Dalcin ierr = MatSetValuesBlocked_MPIBAIJ(B,1,&row,ncols,icols,svals,INSERT_VALUES);CHKERRQ(ierr); 27883adadaf3SJed Brown } else { /* block ordering does not match so we can only insert one block at a time. */ 27893adadaf3SJed Brown PetscInt j; 27903adadaf3SJed Brown for (j=0; j<ncols; j++) { 27913adadaf3SJed Brown const PetscScalar *svals = values + (V ? (bs*bs*(ii[i]+j)) : 0); 27923adadaf3SJed Brown ierr = MatSetValuesBlocked_MPIBAIJ(B,1,&row,1,&icols[j],svals,INSERT_VALUES);CHKERRQ(ierr); 27933adadaf3SJed Brown } 27943adadaf3SJed Brown } 2795aac34f13SBarry Smith } 2796aac34f13SBarry Smith 2797b8d659d7SLisandro Dalcin if (!V) { ierr = PetscFree(values);CHKERRQ(ierr); } 2798aac34f13SBarry Smith ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 2799aac34f13SBarry Smith ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 28007827cd58SJed Brown ierr = MatSetOption(B,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_TRUE);CHKERRQ(ierr); 2801aac34f13SBarry Smith PetscFunctionReturn(0); 2802aac34f13SBarry Smith } 2803aac34f13SBarry Smith 2804aac34f13SBarry Smith /*@C 2805dfb205c3SBarry Smith MatMPIBAIJSetPreallocationCSR - Allocates memory for a sparse parallel matrix in BAIJ format 2806aac34f13SBarry Smith (the default parallel PETSc format). 2807aac34f13SBarry Smith 2808aac34f13SBarry Smith Collective on MPI_Comm 2809aac34f13SBarry Smith 2810aac34f13SBarry Smith Input Parameters: 28111c4f3114SJed Brown + B - the matrix 2812dfb205c3SBarry Smith . bs - the block size 2813aac34f13SBarry Smith . i - the indices into j for the start of each local row (starts with zero) 2814aac34f13SBarry Smith . j - the column indices for each local row (starts with zero) these must be sorted for each row 2815aac34f13SBarry Smith - v - optional values in the matrix 2816aac34f13SBarry Smith 2817aac34f13SBarry Smith Level: developer 2818aac34f13SBarry Smith 281995452b02SPatrick Sanan Notes: 282095452b02SPatrick Sanan The order of the entries in values is specified by the MatOption MAT_ROW_ORIENTED. For example, C programs 28213adadaf3SJed Brown may want to use the default MAT_ROW_ORIENTED=PETSC_TRUE and use an array v[nnz][bs][bs] where the second index is 28223adadaf3SJed Brown over rows within a block and the last index is over columns within a block row. Fortran programs will likely set 28233adadaf3SJed Brown MAT_ROW_ORIENTED=PETSC_FALSE and use a Fortran array v(bs,bs,nnz) in which the first index is over rows within a 28243adadaf3SJed Brown block column and the second index is over columns within a block. 28253adadaf3SJed Brown 2826aac34f13SBarry Smith .keywords: matrix, aij, compressed row, sparse, parallel 2827aac34f13SBarry Smith 28283adadaf3SJed Brown .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatMPIBAIJSetPreallocation(), MatCreateAIJ(), MPIAIJ, MatCreateMPIBAIJWithArrays(), MPIBAIJ 2829aac34f13SBarry Smith @*/ 28307087cfbeSBarry Smith PetscErrorCode MatMPIBAIJSetPreallocationCSR(Mat B,PetscInt bs,const PetscInt i[],const PetscInt j[], const PetscScalar v[]) 2831aac34f13SBarry Smith { 28324ac538c5SBarry Smith PetscErrorCode ierr; 2833aac34f13SBarry Smith 2834aac34f13SBarry Smith PetscFunctionBegin; 28356ba663aaSJed Brown PetscValidHeaderSpecific(B,MAT_CLASSID,1); 28366ba663aaSJed Brown PetscValidType(B,1); 28376ba663aaSJed Brown PetscValidLogicalCollectiveInt(B,bs,2); 28384ac538c5SBarry Smith ierr = PetscTryMethod(B,"MatMPIBAIJSetPreallocationCSR_C",(Mat,PetscInt,const PetscInt[],const PetscInt[],const PetscScalar[]),(B,bs,i,j,v));CHKERRQ(ierr); 2839aac34f13SBarry Smith PetscFunctionReturn(0); 2840aac34f13SBarry Smith } 2841aac34f13SBarry Smith 2842b2573a8aSBarry Smith PetscErrorCode MatMPIBAIJSetPreallocation_MPIBAIJ(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt *d_nnz,PetscInt o_nz,const PetscInt *o_nnz) 2843a23d5eceSKris Buschelman { 2844a23d5eceSKris Buschelman Mat_MPIBAIJ *b; 2845dfbe8321SBarry Smith PetscErrorCode ierr; 2846535b19f3SBarry Smith PetscInt i; 2847a23d5eceSKris Buschelman 2848a23d5eceSKris Buschelman PetscFunctionBegin; 284933d57670SJed Brown ierr = MatSetBlockSize(B,PetscAbs(bs));CHKERRQ(ierr); 285026283091SBarry Smith ierr = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr); 285126283091SBarry Smith ierr = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr); 2852e02043d6SBarry Smith ierr = PetscLayoutGetBlockSize(B->rmap,&bs);CHKERRQ(ierr); 2853899cda47SBarry Smith 2854a23d5eceSKris Buschelman if (d_nnz) { 2855d0f46423SBarry Smith for (i=0; i<B->rmap->n/bs; i++) { 2856e32f2f54SBarry Smith if (d_nnz[i] < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"d_nnz cannot be less than -1: local row %D value %D",i,d_nnz[i]); 2857a23d5eceSKris Buschelman } 2858a23d5eceSKris Buschelman } 2859a23d5eceSKris Buschelman if (o_nnz) { 2860d0f46423SBarry Smith for (i=0; i<B->rmap->n/bs; i++) { 2861e32f2f54SBarry Smith if (o_nnz[i] < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"o_nnz cannot be less than -1: local row %D value %D",i,o_nnz[i]); 2862a23d5eceSKris Buschelman } 2863a23d5eceSKris Buschelman } 2864a23d5eceSKris Buschelman 2865a23d5eceSKris Buschelman b = (Mat_MPIBAIJ*)B->data; 2866a23d5eceSKris Buschelman b->bs2 = bs*bs; 2867d0f46423SBarry Smith b->mbs = B->rmap->n/bs; 2868d0f46423SBarry Smith b->nbs = B->cmap->n/bs; 2869d0f46423SBarry Smith b->Mbs = B->rmap->N/bs; 2870d0f46423SBarry Smith b->Nbs = B->cmap->N/bs; 2871a23d5eceSKris Buschelman 2872a23d5eceSKris Buschelman for (i=0; i<=b->size; i++) { 2873d0f46423SBarry Smith b->rangebs[i] = B->rmap->range[i]/bs; 2874a23d5eceSKris Buschelman } 2875d0f46423SBarry Smith b->rstartbs = B->rmap->rstart/bs; 2876d0f46423SBarry Smith b->rendbs = B->rmap->rend/bs; 2877d0f46423SBarry Smith b->cstartbs = B->cmap->rstart/bs; 2878d0f46423SBarry Smith b->cendbs = B->cmap->rend/bs; 2879a23d5eceSKris Buschelman 2880cb7b82ddSBarry Smith #if defined(PETSC_USE_CTABLE) 2881cb7b82ddSBarry Smith ierr = PetscTableDestroy(&b->colmap);CHKERRQ(ierr); 2882cb7b82ddSBarry Smith #else 2883cb7b82ddSBarry Smith ierr = PetscFree(b->colmap);CHKERRQ(ierr); 2884cb7b82ddSBarry Smith #endif 2885cb7b82ddSBarry Smith ierr = PetscFree(b->garray);CHKERRQ(ierr); 2886cb7b82ddSBarry Smith ierr = VecDestroy(&b->lvec);CHKERRQ(ierr); 2887cb7b82ddSBarry Smith ierr = VecScatterDestroy(&b->Mvctx);CHKERRQ(ierr); 2888cb7b82ddSBarry Smith 2889cb7b82ddSBarry Smith /* Because the B will have been resized we simply destroy it and create a new one each time */ 2890cb7b82ddSBarry Smith ierr = MatDestroy(&b->B);CHKERRQ(ierr); 2891cb7b82ddSBarry Smith ierr = MatCreate(PETSC_COMM_SELF,&b->B);CHKERRQ(ierr); 2892cb7b82ddSBarry Smith ierr = MatSetSizes(b->B,B->rmap->n,B->cmap->N,B->rmap->n,B->cmap->N);CHKERRQ(ierr); 2893cb7b82ddSBarry Smith ierr = MatSetType(b->B,MATSEQBAIJ);CHKERRQ(ierr); 2894cb7b82ddSBarry Smith ierr = PetscLogObjectParent((PetscObject)B,(PetscObject)b->B);CHKERRQ(ierr); 2895cb7b82ddSBarry Smith 2896526dfc15SBarry Smith if (!B->preallocated) { 2897f69a0ea3SMatthew Knepley ierr = MatCreate(PETSC_COMM_SELF,&b->A);CHKERRQ(ierr); 2898d0f46423SBarry Smith ierr = MatSetSizes(b->A,B->rmap->n,B->cmap->n,B->rmap->n,B->cmap->n);CHKERRQ(ierr); 28999c097c71SKris Buschelman ierr = MatSetType(b->A,MATSEQBAIJ);CHKERRQ(ierr); 29003bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)B,(PetscObject)b->A);CHKERRQ(ierr); 2901ce94432eSBarry Smith ierr = MatStashCreate_Private(PetscObjectComm((PetscObject)B),bs,&B->bstash);CHKERRQ(ierr); 2902526dfc15SBarry Smith } 2903a23d5eceSKris Buschelman 2904526dfc15SBarry Smith ierr = MatSeqBAIJSetPreallocation(b->A,bs,d_nz,d_nnz);CHKERRQ(ierr); 2905526dfc15SBarry Smith ierr = MatSeqBAIJSetPreallocation(b->B,bs,o_nz,o_nnz);CHKERRQ(ierr); 2906526dfc15SBarry Smith B->preallocated = PETSC_TRUE; 2907cb7b82ddSBarry Smith B->was_assembled = PETSC_FALSE; 2908cb7b82ddSBarry Smith B->assembled = PETSC_FALSE; 2909a23d5eceSKris Buschelman PetscFunctionReturn(0); 2910a23d5eceSKris Buschelman } 2911a23d5eceSKris Buschelman 29127087cfbeSBarry Smith extern PetscErrorCode MatDiagonalScaleLocal_MPIBAIJ(Mat,Vec); 29137087cfbeSBarry Smith extern PetscErrorCode MatSetHashTableFactor_MPIBAIJ(Mat,PetscReal); 29145bf65638SKris Buschelman 2915cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIBAIJ_MPIAdj(Mat B, MatType newtype,MatReuse reuse,Mat *adj) 291682094794SBarry Smith { 291782094794SBarry Smith Mat_MPIBAIJ *b = (Mat_MPIBAIJ*)B->data; 291882094794SBarry Smith PetscErrorCode ierr; 291982094794SBarry Smith Mat_SeqBAIJ *d = (Mat_SeqBAIJ*) b->A->data,*o = (Mat_SeqBAIJ*) b->B->data; 292082094794SBarry Smith PetscInt M = B->rmap->n/B->rmap->bs,i,*ii,*jj,cnt,j,k,rstart = B->rmap->rstart/B->rmap->bs; 292182094794SBarry Smith const PetscInt *id = d->i, *jd = d->j, *io = o->i, *jo = o->j, *garray = b->garray; 292282094794SBarry Smith 292382094794SBarry Smith PetscFunctionBegin; 2924854ce69bSBarry Smith ierr = PetscMalloc1(M+1,&ii);CHKERRQ(ierr); 292582094794SBarry Smith ii[0] = 0; 292682094794SBarry Smith for (i=0; i<M; i++) { 2927e32f2f54SBarry Smith if ((id[i+1] - id[i]) < 0) SETERRQ3(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Indices wrong %D %D %D",i,id[i],id[i+1]); 2928e32f2f54SBarry Smith if ((io[i+1] - io[i]) < 0) SETERRQ3(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Indices wrong %D %D %D",i,io[i],io[i+1]); 292982094794SBarry Smith ii[i+1] = ii[i] + id[i+1] - id[i] + io[i+1] - io[i]; 29305ee9ba1cSJed Brown /* remove one from count of matrix has diagonal */ 29315ee9ba1cSJed Brown for (j=id[i]; j<id[i+1]; j++) { 29325ee9ba1cSJed Brown if (jd[j] == i) {ii[i+1]--;break;} 29335ee9ba1cSJed Brown } 293482094794SBarry Smith } 2935785e854fSJed Brown ierr = PetscMalloc1(ii[M],&jj);CHKERRQ(ierr); 293682094794SBarry Smith cnt = 0; 293782094794SBarry Smith for (i=0; i<M; i++) { 293882094794SBarry Smith for (j=io[i]; j<io[i+1]; j++) { 293982094794SBarry Smith if (garray[jo[j]] > rstart) break; 294082094794SBarry Smith jj[cnt++] = garray[jo[j]]; 294182094794SBarry Smith } 294282094794SBarry Smith for (k=id[i]; k<id[i+1]; k++) { 29435ee9ba1cSJed Brown if (jd[k] != i) { 294482094794SBarry Smith jj[cnt++] = rstart + jd[k]; 294582094794SBarry Smith } 29465ee9ba1cSJed Brown } 294782094794SBarry Smith for (; j<io[i+1]; j++) { 294882094794SBarry Smith jj[cnt++] = garray[jo[j]]; 294982094794SBarry Smith } 295082094794SBarry Smith } 2951ce94432eSBarry Smith ierr = MatCreateMPIAdj(PetscObjectComm((PetscObject)B),M,B->cmap->N/B->rmap->bs,ii,jj,NULL,adj);CHKERRQ(ierr); 295282094794SBarry Smith PetscFunctionReturn(0); 295382094794SBarry Smith } 295482094794SBarry Smith 2955c6db04a5SJed Brown #include <../src/mat/impls/aij/mpi/mpiaij.h> 295662471d69SBarry Smith 2957cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_SeqBAIJ_SeqAIJ(Mat,MatType,MatReuse,Mat*); 2958b2573a8aSBarry Smith 2959cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIBAIJ_MPIAIJ(Mat A,MatType newtype,MatReuse reuse,Mat *newmat) 296062471d69SBarry Smith { 296162471d69SBarry Smith PetscErrorCode ierr; 296262471d69SBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 296362471d69SBarry Smith Mat B; 296485a69837SSatish Balay Mat_MPIAIJ *b; 296562471d69SBarry Smith 296662471d69SBarry Smith PetscFunctionBegin; 2967ce94432eSBarry Smith if (!A->assembled) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_SUP,"Matrix must be assembled"); 296862471d69SBarry Smith 29690f6d62edSLisandro Dalcin if (reuse == MAT_REUSE_MATRIX) { 29700f6d62edSLisandro Dalcin B = *newmat; 29710f6d62edSLisandro Dalcin } else { 2972ce94432eSBarry Smith ierr = MatCreate(PetscObjectComm((PetscObject)A),&B);CHKERRQ(ierr); 29736d0a4a0eSHong Zhang ierr = MatSetType(B,MATMPIAIJ);CHKERRQ(ierr); 2974f090d951SRémi Lacroix ierr = MatSetSizes(B,A->rmap->n,A->cmap->n,A->rmap->N,A->cmap->N);CHKERRQ(ierr); 2975f090d951SRémi Lacroix ierr = MatSetBlockSizes(B,A->rmap->bs,A->cmap->bs);CHKERRQ(ierr); 29760298fd71SBarry Smith ierr = MatSeqAIJSetPreallocation(B,0,NULL);CHKERRQ(ierr); 29770298fd71SBarry Smith ierr = MatMPIAIJSetPreallocation(B,0,NULL,0,NULL);CHKERRQ(ierr); 29780f6d62edSLisandro Dalcin } 297962471d69SBarry Smith b = (Mat_MPIAIJ*) B->data; 298062471d69SBarry Smith 29810f6d62edSLisandro Dalcin if (reuse == MAT_REUSE_MATRIX) { 29820f6d62edSLisandro Dalcin ierr = MatConvert_SeqBAIJ_SeqAIJ(a->A, MATSEQAIJ, MAT_REUSE_MATRIX, &b->A);CHKERRQ(ierr); 29830f6d62edSLisandro Dalcin ierr = MatConvert_SeqBAIJ_SeqAIJ(a->B, MATSEQAIJ, MAT_REUSE_MATRIX, &b->B);CHKERRQ(ierr); 29840f6d62edSLisandro Dalcin } else { 29856bf464f9SBarry Smith ierr = MatDestroy(&b->A);CHKERRQ(ierr); 29866bf464f9SBarry Smith ierr = MatDestroy(&b->B);CHKERRQ(ierr); 2987ab9863d7SBarry Smith ierr = MatDisAssemble_MPIBAIJ(A);CHKERRQ(ierr); 298862471d69SBarry Smith ierr = MatConvert_SeqBAIJ_SeqAIJ(a->A, MATSEQAIJ, MAT_INITIAL_MATRIX, &b->A);CHKERRQ(ierr); 298962471d69SBarry Smith ierr = MatConvert_SeqBAIJ_SeqAIJ(a->B, MATSEQAIJ, MAT_INITIAL_MATRIX, &b->B);CHKERRQ(ierr); 29906a719282SBarry Smith ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 29916a719282SBarry Smith ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 29920f6d62edSLisandro Dalcin } 29930f6d62edSLisandro Dalcin ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 29940f6d62edSLisandro Dalcin ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 29950f6d62edSLisandro Dalcin 2996511c6705SHong Zhang if (reuse == MAT_INPLACE_MATRIX) { 299728be2f97SBarry Smith ierr = MatHeaderReplace(A,&B);CHKERRQ(ierr); 299862471d69SBarry Smith } else { 299962471d69SBarry Smith *newmat = B; 300062471d69SBarry Smith } 300162471d69SBarry Smith PetscFunctionReturn(0); 300262471d69SBarry Smith } 300362471d69SBarry Smith 30040bad9183SKris Buschelman /*MC 3005fafad747SKris Buschelman MATMPIBAIJ - MATMPIBAIJ = "mpibaij" - A matrix type to be used for distributed block sparse matrices. 30060bad9183SKris Buschelman 30070bad9183SKris Buschelman Options Database Keys: 30088c07d4e3SBarry Smith + -mat_type mpibaij - sets the matrix type to "mpibaij" during a call to MatSetFromOptions() 30098c07d4e3SBarry Smith . -mat_block_size <bs> - set the blocksize used to store the matrix 30108c07d4e3SBarry Smith - -mat_use_hash_table <fact> 30110bad9183SKris Buschelman 30120bad9183SKris Buschelman Level: beginner 30130bad9183SKris Buschelman 30140bad9183SKris Buschelman .seealso: MatCreateMPIBAIJ 30150bad9183SKris Buschelman M*/ 30160bad9183SKris Buschelman 3017cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIBAIJ_MPIBSTRM(Mat,MatType,MatReuse,Mat*); 301875d48cdbSStefano Zampini PETSC_INTERN PetscErrorCode MatPtAP_IS_XAIJ(Mat,Mat,MatReuse,PetscReal,Mat*); 3019c0cdd4a1SDahai Guo 30208cc058d9SJed Brown PETSC_EXTERN PetscErrorCode MatCreate_MPIBAIJ(Mat B) 3021273d9f13SBarry Smith { 3022273d9f13SBarry Smith Mat_MPIBAIJ *b; 3023dfbe8321SBarry Smith PetscErrorCode ierr; 302494ae4db5SBarry Smith PetscBool flg = PETSC_FALSE; 3025273d9f13SBarry Smith 3026273d9f13SBarry Smith PetscFunctionBegin; 3027b00a9115SJed Brown ierr = PetscNewLog(B,&b);CHKERRQ(ierr); 302882502324SSatish Balay B->data = (void*)b; 302982502324SSatish Balay 3030273d9f13SBarry Smith ierr = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr); 3031273d9f13SBarry Smith B->assembled = PETSC_FALSE; 3032273d9f13SBarry Smith 3033273d9f13SBarry Smith B->insertmode = NOT_SET_VALUES; 3034ce94432eSBarry Smith ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)B),&b->rank);CHKERRQ(ierr); 3035ce94432eSBarry Smith ierr = MPI_Comm_size(PetscObjectComm((PetscObject)B),&b->size);CHKERRQ(ierr); 3036273d9f13SBarry Smith 3037273d9f13SBarry Smith /* build local table of row and column ownerships */ 3038854ce69bSBarry Smith ierr = PetscMalloc1(b->size+1,&b->rangebs);CHKERRQ(ierr); 3039273d9f13SBarry Smith 3040273d9f13SBarry Smith /* build cache for off array entries formed */ 3041ce94432eSBarry Smith ierr = MatStashCreate_Private(PetscObjectComm((PetscObject)B),1,&B->stash);CHKERRQ(ierr); 304226fbe8dcSKarl Rupp 3043273d9f13SBarry Smith b->donotstash = PETSC_FALSE; 30440298fd71SBarry Smith b->colmap = NULL; 30450298fd71SBarry Smith b->garray = NULL; 3046273d9f13SBarry Smith b->roworiented = PETSC_TRUE; 3047273d9f13SBarry Smith 3048273d9f13SBarry Smith /* stuff used in block assembly */ 3049273d9f13SBarry Smith b->barray = 0; 3050273d9f13SBarry Smith 3051273d9f13SBarry Smith /* stuff used for matrix vector multiply */ 3052273d9f13SBarry Smith b->lvec = 0; 3053273d9f13SBarry Smith b->Mvctx = 0; 3054273d9f13SBarry Smith 3055273d9f13SBarry Smith /* stuff for MatGetRow() */ 3056273d9f13SBarry Smith b->rowindices = 0; 3057273d9f13SBarry Smith b->rowvalues = 0; 3058273d9f13SBarry Smith b->getrowactive = PETSC_FALSE; 3059273d9f13SBarry Smith 3060273d9f13SBarry Smith /* hash table stuff */ 3061273d9f13SBarry Smith b->ht = 0; 3062273d9f13SBarry Smith b->hd = 0; 3063273d9f13SBarry Smith b->ht_size = 0; 3064273d9f13SBarry Smith b->ht_flag = PETSC_FALSE; 3065273d9f13SBarry Smith b->ht_fact = 0; 3066273d9f13SBarry Smith b->ht_total_ct = 0; 3067273d9f13SBarry Smith b->ht_insert_ct = 0; 3068273d9f13SBarry Smith 30697dae84e0SHong Zhang /* stuff for MatCreateSubMatrices_MPIBAIJ_local() */ 30707a868f3eSHong Zhang b->ijonly = PETSC_FALSE; 30717a868f3eSHong Zhang 30728c07d4e3SBarry Smith 3073bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpibaij_mpiadj_C",MatConvert_MPIBAIJ_MPIAdj);CHKERRQ(ierr); 3074bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpibaij_mpiaij_C",MatConvert_MPIBAIJ_MPIAIJ);CHKERRQ(ierr); 3075bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpibaij_mpisbaij_C",MatConvert_MPIBAIJ_MPISBAIJ);CHKERRQ(ierr); 30767ea3e4caSstefano_zampini #if defined(PETSC_HAVE_HYPRE) 30777ea3e4caSstefano_zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpibaij_hypre_C",MatConvert_AIJ_HYPRE);CHKERRQ(ierr); 30787ea3e4caSstefano_zampini #endif 3079bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatStoreValues_C",MatStoreValues_MPIBAIJ);CHKERRQ(ierr); 3080bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatRetrieveValues_C",MatRetrieveValues_MPIBAIJ);CHKERRQ(ierr); 3081bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatMPIBAIJSetPreallocation_C",MatMPIBAIJSetPreallocation_MPIBAIJ);CHKERRQ(ierr); 3082bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatMPIBAIJSetPreallocationCSR_C",MatMPIBAIJSetPreallocationCSR_MPIBAIJ);CHKERRQ(ierr); 3083bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatDiagonalScaleLocal_C",MatDiagonalScaleLocal_MPIBAIJ);CHKERRQ(ierr); 3084bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatSetHashTableFactor_C",MatSetHashTableFactor_MPIBAIJ);CHKERRQ(ierr); 308575d48cdbSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatPtAP_is_mpibaij_C",MatPtAP_IS_XAIJ);CHKERRQ(ierr); 3086c9225affSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpibaij_is_C",MatConvert_XAIJ_IS);CHKERRQ(ierr); 308717667f90SBarry Smith ierr = PetscObjectChangeTypeName((PetscObject)B,MATMPIBAIJ);CHKERRQ(ierr); 308894ae4db5SBarry Smith 308994ae4db5SBarry Smith ierr = PetscOptionsBegin(PetscObjectComm((PetscObject)B),NULL,"Options for loading MPIBAIJ matrix 1","Mat");CHKERRQ(ierr); 3090abf3b562SBarry Smith ierr = PetscOptionsName("-mat_use_hash_table","Use hash table to save time in constructing matrix","MatSetOption",&flg);CHKERRQ(ierr); 309194ae4db5SBarry Smith if (flg) { 309294ae4db5SBarry Smith PetscReal fact = 1.39; 309394ae4db5SBarry Smith ierr = MatSetOption(B,MAT_USE_HASH_TABLE,PETSC_TRUE);CHKERRQ(ierr); 309494ae4db5SBarry Smith ierr = PetscOptionsReal("-mat_use_hash_table","Use hash table factor","MatMPIBAIJSetHashTableFactor",fact,&fact,NULL);CHKERRQ(ierr); 309594ae4db5SBarry Smith if (fact <= 1.0) fact = 1.39; 309694ae4db5SBarry Smith ierr = MatMPIBAIJSetHashTableFactor(B,fact);CHKERRQ(ierr); 309794ae4db5SBarry Smith ierr = PetscInfo1(B,"Hash table Factor used %5.2f\n",fact);CHKERRQ(ierr); 309894ae4db5SBarry Smith } 309994ae4db5SBarry Smith ierr = PetscOptionsEnd();CHKERRQ(ierr); 3100273d9f13SBarry Smith PetscFunctionReturn(0); 3101273d9f13SBarry Smith } 3102273d9f13SBarry Smith 3103209238afSKris Buschelman /*MC 3104002d173eSKris Buschelman MATBAIJ - MATBAIJ = "baij" - A matrix type to be used for block sparse matrices. 3105209238afSKris Buschelman 3106209238afSKris Buschelman This matrix type is identical to MATSEQBAIJ when constructed with a single process communicator, 3107209238afSKris Buschelman and MATMPIBAIJ otherwise. 3108209238afSKris Buschelman 3109209238afSKris Buschelman Options Database Keys: 3110209238afSKris Buschelman . -mat_type baij - sets the matrix type to "baij" during a call to MatSetFromOptions() 3111209238afSKris Buschelman 3112209238afSKris Buschelman Level: beginner 3113209238afSKris Buschelman 311469b1f4b7SBarry Smith .seealso: MatCreateBAIJ(),MATSEQBAIJ,MATMPIBAIJ, MatMPIBAIJSetPreallocation(), MatMPIBAIJSetPreallocationCSR() 3115209238afSKris Buschelman M*/ 3116209238afSKris Buschelman 3117273d9f13SBarry Smith /*@C 3118aac34f13SBarry Smith MatMPIBAIJSetPreallocation - Allocates memory for a sparse parallel matrix in block AIJ format 3119273d9f13SBarry Smith (block compressed row). For good matrix assembly performance 3120273d9f13SBarry Smith the user should preallocate the matrix storage by setting the parameters 3121273d9f13SBarry Smith d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 3122273d9f13SBarry Smith performance can be increased by more than a factor of 50. 3123273d9f13SBarry Smith 3124273d9f13SBarry Smith Collective on Mat 3125273d9f13SBarry Smith 3126273d9f13SBarry Smith Input Parameters: 31271c4f3114SJed Brown + B - the matrix 3128bb7ae925SBarry Smith . bs - size of block, the blocks are ALWAYS square. One can use MatSetBlockSizes() to set a different row and column blocksize but the row 3129bb7ae925SBarry Smith blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with MatCreateVecs() 3130273d9f13SBarry Smith . d_nz - number of block nonzeros per block row in diagonal portion of local 3131273d9f13SBarry Smith submatrix (same for all local rows) 3132273d9f13SBarry Smith . d_nnz - array containing the number of block nonzeros in the various block rows 3133273d9f13SBarry Smith of the in diagonal portion of the local (possibly different for each block 31340298fd71SBarry Smith row) or NULL. If you plan to factor the matrix you must leave room for the diagonal entry and 313595742e49SBarry Smith set it even if it is zero. 3136273d9f13SBarry Smith . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 3137273d9f13SBarry Smith submatrix (same for all local rows). 3138273d9f13SBarry Smith - o_nnz - array containing the number of nonzeros in the various block rows of the 3139273d9f13SBarry Smith off-diagonal portion of the local submatrix (possibly different for 31400298fd71SBarry Smith each block row) or NULL. 3141273d9f13SBarry Smith 314249a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 3143273d9f13SBarry Smith 3144273d9f13SBarry Smith Options Database Keys: 31458c07d4e3SBarry Smith + -mat_block_size - size of the blocks to use 31468c07d4e3SBarry Smith - -mat_use_hash_table <fact> 3147273d9f13SBarry Smith 3148273d9f13SBarry Smith Notes: 3149273d9f13SBarry Smith If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one processor 3150273d9f13SBarry Smith than it must be used on all processors that share the object for that argument. 3151273d9f13SBarry Smith 3152273d9f13SBarry Smith Storage Information: 3153273d9f13SBarry Smith For a square global matrix we define each processor's diagonal portion 3154273d9f13SBarry Smith to be its local rows and the corresponding columns (a square submatrix); 3155273d9f13SBarry Smith each processor's off-diagonal portion encompasses the remainder of the 3156273d9f13SBarry Smith local matrix (a rectangular submatrix). 3157273d9f13SBarry Smith 3158273d9f13SBarry Smith The user can specify preallocated storage for the diagonal part of 3159273d9f13SBarry Smith the local submatrix with either d_nz or d_nnz (not both). Set 31600298fd71SBarry Smith d_nz=PETSC_DEFAULT and d_nnz=NULL for PETSc to control dynamic 3161273d9f13SBarry Smith memory allocation. Likewise, specify preallocated storage for the 3162273d9f13SBarry Smith off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 3163273d9f13SBarry Smith 3164273d9f13SBarry Smith Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 3165273d9f13SBarry Smith the figure below we depict these three local rows and all columns (0-11). 3166273d9f13SBarry Smith 3167273d9f13SBarry Smith .vb 3168273d9f13SBarry Smith 0 1 2 3 4 5 6 7 8 9 10 11 3169a4b1a0f6SJed Brown -------------------------- 3170273d9f13SBarry Smith row 3 |o o o d d d o o o o o o 3171273d9f13SBarry Smith row 4 |o o o d d d o o o o o o 3172273d9f13SBarry Smith row 5 |o o o d d d o o o o o o 3173a4b1a0f6SJed Brown -------------------------- 3174273d9f13SBarry Smith .ve 3175273d9f13SBarry Smith 3176273d9f13SBarry Smith Thus, any entries in the d locations are stored in the d (diagonal) 3177273d9f13SBarry Smith submatrix, and any entries in the o locations are stored in the 3178273d9f13SBarry Smith o (off-diagonal) submatrix. Note that the d and the o submatrices are 3179273d9f13SBarry Smith stored simply in the MATSEQBAIJ format for compressed row storage. 3180273d9f13SBarry Smith 3181273d9f13SBarry Smith Now d_nz should indicate the number of block nonzeros per row in the d matrix, 3182273d9f13SBarry Smith and o_nz should indicate the number of block nonzeros per row in the o matrix. 3183273d9f13SBarry Smith In general, for PDE problems in which most nonzeros are near the diagonal, 3184273d9f13SBarry Smith one expects d_nz >> o_nz. For large problems you MUST preallocate memory 3185273d9f13SBarry Smith or you will get TERRIBLE performance; see the users' manual chapter on 3186273d9f13SBarry Smith matrices. 3187273d9f13SBarry Smith 3188aa95bbe8SBarry Smith You can call MatGetInfo() to get information on how effective the preallocation was; 3189aa95bbe8SBarry Smith for example the fields mallocs,nz_allocated,nz_used,nz_unneeded; 3190aa95bbe8SBarry Smith You can also run with the option -info and look for messages with the string 3191aa95bbe8SBarry Smith malloc in them to see if additional memory allocation was needed. 3192aa95bbe8SBarry Smith 3193273d9f13SBarry Smith Level: intermediate 3194273d9f13SBarry Smith 3195273d9f13SBarry Smith .keywords: matrix, block, aij, compressed row, sparse, parallel 3196273d9f13SBarry Smith 3197ab978733SBarry Smith .seealso: MatCreate(), MatCreateSeqBAIJ(), MatSetValues(), MatCreateBAIJ(), MatMPIBAIJSetPreallocationCSR(), PetscSplitOwnership() 3198273d9f13SBarry Smith @*/ 31997087cfbeSBarry Smith PetscErrorCode MatMPIBAIJSetPreallocation(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[]) 3200273d9f13SBarry Smith { 32014ac538c5SBarry Smith PetscErrorCode ierr; 3202273d9f13SBarry Smith 3203273d9f13SBarry Smith PetscFunctionBegin; 32046ba663aaSJed Brown PetscValidHeaderSpecific(B,MAT_CLASSID,1); 32056ba663aaSJed Brown PetscValidType(B,1); 32066ba663aaSJed Brown PetscValidLogicalCollectiveInt(B,bs,2); 32074ac538c5SBarry Smith ierr = PetscTryMethod(B,"MatMPIBAIJSetPreallocation_C",(Mat,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[]),(B,bs,d_nz,d_nnz,o_nz,o_nnz));CHKERRQ(ierr); 3208273d9f13SBarry Smith PetscFunctionReturn(0); 3209273d9f13SBarry Smith } 3210273d9f13SBarry Smith 321179bdfe76SSatish Balay /*@C 321269b1f4b7SBarry Smith MatCreateBAIJ - Creates a sparse parallel matrix in block AIJ format 321379bdfe76SSatish Balay (block compressed row). For good matrix assembly performance 321479bdfe76SSatish Balay the user should preallocate the matrix storage by setting the parameters 321579bdfe76SSatish Balay d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 321679bdfe76SSatish Balay performance can be increased by more than a factor of 50. 321779bdfe76SSatish Balay 3218db81eaa0SLois Curfman McInnes Collective on MPI_Comm 3219db81eaa0SLois Curfman McInnes 322079bdfe76SSatish Balay Input Parameters: 3221db81eaa0SLois Curfman McInnes + comm - MPI communicator 3222bb7ae925SBarry Smith . bs - size of block, the blocks are ALWAYS square. One can use MatSetBlockSizes() to set a different row and column blocksize but the row 3223bb7ae925SBarry Smith blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with MatCreateVecs() 322479bdfe76SSatish Balay . m - number of local rows (or PETSC_DECIDE to have calculated if M is given) 322592e8d321SLois Curfman McInnes This value should be the same as the local size used in creating the 322692e8d321SLois Curfman McInnes y vector for the matrix-vector product y = Ax. 322792e8d321SLois Curfman McInnes . n - number of local columns (or PETSC_DECIDE to have calculated if N is given) 322892e8d321SLois Curfman McInnes This value should be the same as the local size used in creating the 322992e8d321SLois Curfman McInnes x vector for the matrix-vector product y = Ax. 3230be79a94dSBarry Smith . M - number of global rows (or PETSC_DETERMINE to have calculated if m is given) 3231be79a94dSBarry Smith . N - number of global columns (or PETSC_DETERMINE to have calculated if n is given) 323247a75d0bSBarry Smith . d_nz - number of nonzero blocks per block row in diagonal portion of local 323379bdfe76SSatish Balay submatrix (same for all local rows) 323447a75d0bSBarry Smith . d_nnz - array containing the number of nonzero blocks in the various block rows 323592e8d321SLois Curfman McInnes of the in diagonal portion of the local (possibly different for each block 32360298fd71SBarry Smith row) or NULL. If you plan to factor the matrix you must leave room for the diagonal entry 323795742e49SBarry Smith and set it even if it is zero. 323847a75d0bSBarry Smith . o_nz - number of nonzero blocks per block row in the off-diagonal portion of local 323979bdfe76SSatish Balay submatrix (same for all local rows). 324047a75d0bSBarry Smith - o_nnz - array containing the number of nonzero blocks in the various block rows of the 324192e8d321SLois Curfman McInnes off-diagonal portion of the local submatrix (possibly different for 32420298fd71SBarry Smith each block row) or NULL. 324379bdfe76SSatish Balay 324479bdfe76SSatish Balay Output Parameter: 324579bdfe76SSatish Balay . A - the matrix 324679bdfe76SSatish Balay 3247db81eaa0SLois Curfman McInnes Options Database Keys: 32488c07d4e3SBarry Smith + -mat_block_size - size of the blocks to use 32498c07d4e3SBarry Smith - -mat_use_hash_table <fact> 32503ffaccefSLois Curfman McInnes 3251175b88e8SBarry Smith It is recommended that one use the MatCreate(), MatSetType() and/or MatSetFromOptions(), 3252ae1d86c5SBarry Smith MatXXXXSetPreallocation() paradgm instead of this routine directly. 3253175b88e8SBarry Smith [MatXXXXSetPreallocation() is, for example, MatSeqAIJSetPreallocation] 3254175b88e8SBarry Smith 3255b259b22eSLois Curfman McInnes Notes: 325649a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 325749a6f317SBarry Smith 325847a75d0bSBarry Smith A nonzero block is any block that as 1 or more nonzeros in it 325947a75d0bSBarry Smith 326079bdfe76SSatish Balay The user MUST specify either the local or global matrix dimensions 326179bdfe76SSatish Balay (possibly both). 326279bdfe76SSatish Balay 3263be79a94dSBarry Smith If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one processor 3264be79a94dSBarry Smith than it must be used on all processors that share the object for that argument. 3265be79a94dSBarry Smith 326679bdfe76SSatish Balay Storage Information: 326779bdfe76SSatish Balay For a square global matrix we define each processor's diagonal portion 326879bdfe76SSatish Balay to be its local rows and the corresponding columns (a square submatrix); 326979bdfe76SSatish Balay each processor's off-diagonal portion encompasses the remainder of the 327079bdfe76SSatish Balay local matrix (a rectangular submatrix). 327179bdfe76SSatish Balay 327279bdfe76SSatish Balay The user can specify preallocated storage for the diagonal part of 327379bdfe76SSatish Balay the local submatrix with either d_nz or d_nnz (not both). Set 32740298fd71SBarry Smith d_nz=PETSC_DEFAULT and d_nnz=NULL for PETSc to control dynamic 327579bdfe76SSatish Balay memory allocation. Likewise, specify preallocated storage for the 327679bdfe76SSatish Balay off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 327779bdfe76SSatish Balay 327879bdfe76SSatish Balay Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 327979bdfe76SSatish Balay the figure below we depict these three local rows and all columns (0-11). 328079bdfe76SSatish Balay 3281db81eaa0SLois Curfman McInnes .vb 3282db81eaa0SLois Curfman McInnes 0 1 2 3 4 5 6 7 8 9 10 11 3283a4b1a0f6SJed Brown -------------------------- 3284db81eaa0SLois Curfman McInnes row 3 |o o o d d d o o o o o o 3285db81eaa0SLois Curfman McInnes row 4 |o o o d d d o o o o o o 3286db81eaa0SLois Curfman McInnes row 5 |o o o d d d o o o o o o 3287a4b1a0f6SJed Brown -------------------------- 3288db81eaa0SLois Curfman McInnes .ve 328979bdfe76SSatish Balay 329079bdfe76SSatish Balay Thus, any entries in the d locations are stored in the d (diagonal) 329179bdfe76SSatish Balay submatrix, and any entries in the o locations are stored in the 329279bdfe76SSatish Balay o (off-diagonal) submatrix. Note that the d and the o submatrices are 329357b952d6SSatish Balay stored simply in the MATSEQBAIJ format for compressed row storage. 329479bdfe76SSatish Balay 3295d64ed03dSBarry Smith Now d_nz should indicate the number of block nonzeros per row in the d matrix, 3296d64ed03dSBarry Smith and o_nz should indicate the number of block nonzeros per row in the o matrix. 329779bdfe76SSatish Balay In general, for PDE problems in which most nonzeros are near the diagonal, 329892e8d321SLois Curfman McInnes one expects d_nz >> o_nz. For large problems you MUST preallocate memory 329992e8d321SLois Curfman McInnes or you will get TERRIBLE performance; see the users' manual chapter on 33006da5968aSLois Curfman McInnes matrices. 330179bdfe76SSatish Balay 3302027ccd11SLois Curfman McInnes Level: intermediate 3303027ccd11SLois Curfman McInnes 330492e8d321SLois Curfman McInnes .keywords: matrix, block, aij, compressed row, sparse, parallel 330579bdfe76SSatish Balay 330669b1f4b7SBarry Smith .seealso: MatCreate(), MatCreateSeqBAIJ(), MatSetValues(), MatCreateBAIJ(), MatMPIBAIJSetPreallocation(), MatMPIBAIJSetPreallocationCSR() 330779bdfe76SSatish Balay @*/ 330869b1f4b7SBarry Smith PetscErrorCode MatCreateBAIJ(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[],Mat *A) 330979bdfe76SSatish Balay { 33106849ba73SBarry Smith PetscErrorCode ierr; 3311b24ad042SBarry Smith PetscMPIInt size; 331279bdfe76SSatish Balay 3313d64ed03dSBarry Smith PetscFunctionBegin; 3314f69a0ea3SMatthew Knepley ierr = MatCreate(comm,A);CHKERRQ(ierr); 3315f69a0ea3SMatthew Knepley ierr = MatSetSizes(*A,m,n,M,N);CHKERRQ(ierr); 3316d132466eSBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 3317273d9f13SBarry Smith if (size > 1) { 3318273d9f13SBarry Smith ierr = MatSetType(*A,MATMPIBAIJ);CHKERRQ(ierr); 3319273d9f13SBarry Smith ierr = MatMPIBAIJSetPreallocation(*A,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr); 3320273d9f13SBarry Smith } else { 3321273d9f13SBarry Smith ierr = MatSetType(*A,MATSEQBAIJ);CHKERRQ(ierr); 3322273d9f13SBarry Smith ierr = MatSeqBAIJSetPreallocation(*A,bs,d_nz,d_nnz);CHKERRQ(ierr); 33233914022bSBarry Smith } 33243a40ed3dSBarry Smith PetscFunctionReturn(0); 332579bdfe76SSatish Balay } 3326026e39d0SSatish Balay 33276849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIBAIJ(Mat matin,MatDuplicateOption cpvalues,Mat *newmat) 33280ac07820SSatish Balay { 33290ac07820SSatish Balay Mat mat; 33300ac07820SSatish Balay Mat_MPIBAIJ *a,*oldmat = (Mat_MPIBAIJ*)matin->data; 3331dfbe8321SBarry Smith PetscErrorCode ierr; 3332b24ad042SBarry Smith PetscInt len=0; 33330ac07820SSatish Balay 3334d64ed03dSBarry Smith PetscFunctionBegin; 33350ac07820SSatish Balay *newmat = 0; 3336ce94432eSBarry Smith ierr = MatCreate(PetscObjectComm((PetscObject)matin),&mat);CHKERRQ(ierr); 3337d0f46423SBarry Smith ierr = MatSetSizes(mat,matin->rmap->n,matin->cmap->n,matin->rmap->N,matin->cmap->N);CHKERRQ(ierr); 33387adad957SLisandro Dalcin ierr = MatSetType(mat,((PetscObject)matin)->type_name);CHKERRQ(ierr); 33391d5dac46SHong Zhang ierr = PetscMemcpy(mat->ops,matin->ops,sizeof(struct _MatOps));CHKERRQ(ierr); 33407fff6886SHong Zhang 3341d5f3da31SBarry Smith mat->factortype = matin->factortype; 3342273d9f13SBarry Smith mat->preallocated = PETSC_TRUE; 33430ac07820SSatish Balay mat->assembled = PETSC_TRUE; 33447fff6886SHong Zhang mat->insertmode = NOT_SET_VALUES; 33457fff6886SHong Zhang 3346273d9f13SBarry Smith a = (Mat_MPIBAIJ*)mat->data; 3347d0f46423SBarry Smith mat->rmap->bs = matin->rmap->bs; 33480ac07820SSatish Balay a->bs2 = oldmat->bs2; 33490ac07820SSatish Balay a->mbs = oldmat->mbs; 33500ac07820SSatish Balay a->nbs = oldmat->nbs; 33510ac07820SSatish Balay a->Mbs = oldmat->Mbs; 33520ac07820SSatish Balay a->Nbs = oldmat->Nbs; 33530ac07820SSatish Balay 33541e1e43feSBarry Smith ierr = PetscLayoutReference(matin->rmap,&mat->rmap);CHKERRQ(ierr); 33551e1e43feSBarry Smith ierr = PetscLayoutReference(matin->cmap,&mat->cmap);CHKERRQ(ierr); 3356899cda47SBarry Smith 33570ac07820SSatish Balay a->size = oldmat->size; 33580ac07820SSatish Balay a->rank = oldmat->rank; 3359aef5e8e0SSatish Balay a->donotstash = oldmat->donotstash; 3360aef5e8e0SSatish Balay a->roworiented = oldmat->roworiented; 3361aef5e8e0SSatish Balay a->rowindices = 0; 33620ac07820SSatish Balay a->rowvalues = 0; 33630ac07820SSatish Balay a->getrowactive = PETSC_FALSE; 336430793edcSSatish Balay a->barray = 0; 3365899cda47SBarry Smith a->rstartbs = oldmat->rstartbs; 3366899cda47SBarry Smith a->rendbs = oldmat->rendbs; 3367899cda47SBarry Smith a->cstartbs = oldmat->cstartbs; 3368899cda47SBarry Smith a->cendbs = oldmat->cendbs; 33690ac07820SSatish Balay 3370133cdb44SSatish Balay /* hash table stuff */ 3371133cdb44SSatish Balay a->ht = 0; 3372133cdb44SSatish Balay a->hd = 0; 3373133cdb44SSatish Balay a->ht_size = 0; 3374133cdb44SSatish Balay a->ht_flag = oldmat->ht_flag; 337525fdafccSSatish Balay a->ht_fact = oldmat->ht_fact; 3376133cdb44SSatish Balay a->ht_total_ct = 0; 3377133cdb44SSatish Balay a->ht_insert_ct = 0; 3378133cdb44SSatish Balay 3379899cda47SBarry Smith ierr = PetscMemcpy(a->rangebs,oldmat->rangebs,(a->size+1)*sizeof(PetscInt));CHKERRQ(ierr); 33800ac07820SSatish Balay if (oldmat->colmap) { 3381aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 33820f5bd95cSBarry Smith ierr = PetscTableCreateCopy(oldmat->colmap,&a->colmap);CHKERRQ(ierr); 338348e59246SSatish Balay #else 3384854ce69bSBarry Smith ierr = PetscMalloc1(a->Nbs,&a->colmap);CHKERRQ(ierr); 33853bb1ff40SBarry Smith ierr = PetscLogObjectMemory((PetscObject)mat,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr); 3386b24ad042SBarry Smith ierr = PetscMemcpy(a->colmap,oldmat->colmap,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr); 338748e59246SSatish Balay #endif 33880ac07820SSatish Balay } else a->colmap = 0; 33894beb1cfeSHong Zhang 33900ac07820SSatish Balay if (oldmat->garray && (len = ((Mat_SeqBAIJ*)(oldmat->B->data))->nbs)) { 3391785e854fSJed Brown ierr = PetscMalloc1(len,&a->garray);CHKERRQ(ierr); 33923bb1ff40SBarry Smith ierr = PetscLogObjectMemory((PetscObject)mat,len*sizeof(PetscInt));CHKERRQ(ierr); 3393b24ad042SBarry Smith ierr = PetscMemcpy(a->garray,oldmat->garray,len*sizeof(PetscInt));CHKERRQ(ierr); 33940ac07820SSatish Balay } else a->garray = 0; 33950ac07820SSatish Balay 3396ce94432eSBarry Smith ierr = MatStashCreate_Private(PetscObjectComm((PetscObject)matin),matin->rmap->bs,&mat->bstash);CHKERRQ(ierr); 33970ac07820SSatish Balay ierr = VecDuplicate(oldmat->lvec,&a->lvec);CHKERRQ(ierr); 33983bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->lvec);CHKERRQ(ierr); 33990ac07820SSatish Balay ierr = VecScatterCopy(oldmat->Mvctx,&a->Mvctx);CHKERRQ(ierr); 34003bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->Mvctx);CHKERRQ(ierr); 34017fff6886SHong Zhang 34022e8a6d31SBarry Smith ierr = MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr); 34033bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->A);CHKERRQ(ierr); 34042e8a6d31SBarry Smith ierr = MatDuplicate(oldmat->B,cpvalues,&a->B);CHKERRQ(ierr); 34053bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->B);CHKERRQ(ierr); 3406140e18c1SBarry Smith ierr = PetscFunctionListDuplicate(((PetscObject)matin)->qlist,&((PetscObject)mat)->qlist);CHKERRQ(ierr); 34070ac07820SSatish Balay *newmat = mat; 34083a40ed3dSBarry Smith PetscFunctionReturn(0); 34090ac07820SSatish Balay } 341057b952d6SSatish Balay 3411112444f4SShri Abhyankar PetscErrorCode MatLoad_MPIBAIJ(Mat newmat,PetscViewer viewer) 34124683f7a4SShri Abhyankar { 34134683f7a4SShri Abhyankar PetscErrorCode ierr; 34144683f7a4SShri Abhyankar int fd; 34154683f7a4SShri Abhyankar PetscInt i,nz,j,rstart,rend; 34164683f7a4SShri Abhyankar PetscScalar *vals,*buf; 3417ce94432eSBarry Smith MPI_Comm comm; 34184683f7a4SShri Abhyankar MPI_Status status; 34194683f7a4SShri Abhyankar PetscMPIInt rank,size,maxnz; 34204683f7a4SShri Abhyankar PetscInt header[4],*rowlengths = 0,M,N,m,*rowners,*cols; 34210298fd71SBarry Smith PetscInt *locrowlens = NULL,*procsnz = NULL,*browners = NULL; 34223059b6faSBarry Smith PetscInt jj,*mycols,*ibuf,bs = newmat->rmap->bs,Mbs,mbs,extra_rows,mmax; 34234683f7a4SShri Abhyankar PetscMPIInt tag = ((PetscObject)viewer)->tag; 34240298fd71SBarry Smith PetscInt *dlens = NULL,*odlens = NULL,*mask = NULL,*masked1 = NULL,*masked2 = NULL,rowcount,odcount; 3425461878b2SBarry Smith PetscInt dcount,kmax,k,nzcount,tmp,mend; 3426*7f489da9SVaclav Hapla PetscBool isbinary; 34274683f7a4SShri Abhyankar 34284683f7a4SShri Abhyankar PetscFunctionBegin; 3429*7f489da9SVaclav Hapla ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary);CHKERRQ(ierr); 3430*7f489da9SVaclav Hapla if (!isbinary) SETERRQ2(PetscObjectComm((PetscObject)newmat),PETSC_ERR_SUP,"Viewer type %s not yet supported for reading %s matrices",((PetscObject)viewer)->type_name,((PetscObject)newmat)->type_name); 3431*7f489da9SVaclav Hapla 3432c98fd787SBarry Smith /* force binary viewer to load .info file if it has not yet done so */ 3433c98fd787SBarry Smith ierr = PetscViewerSetUp(viewer);CHKERRQ(ierr); 3434ce94432eSBarry Smith ierr = PetscObjectGetComm((PetscObject)viewer,&comm);CHKERRQ(ierr); 34350298fd71SBarry Smith ierr = PetscOptionsBegin(comm,NULL,"Options for loading MPIBAIJ matrix 2","Mat");CHKERRQ(ierr); 34360298fd71SBarry Smith ierr = PetscOptionsInt("-matload_block_size","Set the blocksize used to store the matrix","MatLoad",bs,&bs,NULL);CHKERRQ(ierr); 34374683f7a4SShri Abhyankar ierr = PetscOptionsEnd();CHKERRQ(ierr); 34383059b6faSBarry Smith if (bs < 0) bs = 1; 34394683f7a4SShri Abhyankar 34404683f7a4SShri Abhyankar ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 34414683f7a4SShri Abhyankar ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 34424683f7a4SShri Abhyankar ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr); 34435872f025SBarry Smith if (!rank) { 34444683f7a4SShri Abhyankar ierr = PetscBinaryRead(fd,(char*)header,4,PETSC_INT);CHKERRQ(ierr); 34454683f7a4SShri Abhyankar if (header[0] != MAT_FILE_CLASSID) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"not matrix object"); 344602f61395SBarry Smith if (header[3] < 0) SETERRQ(PetscObjectComm((PetscObject)newmat),PETSC_ERR_FILE_UNEXPECTED,"Matrix stored in special format on disk, cannot load as MPIAIJ"); 34474683f7a4SShri Abhyankar } 34484683f7a4SShri Abhyankar ierr = MPI_Bcast(header+1,3,MPIU_INT,0,comm);CHKERRQ(ierr); 34494683f7a4SShri Abhyankar M = header[1]; N = header[2]; 34504683f7a4SShri Abhyankar 34514683f7a4SShri Abhyankar /* If global sizes are set, check if they are consistent with that given in the file */ 3452461878b2SBarry Smith if (newmat->rmap->N >= 0 && newmat->rmap->N != M) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"Inconsistent # of rows:Matrix in file has (%D) and input matrix has (%D)",newmat->rmap->N,M); 3453461878b2SBarry Smith if (newmat->cmap->N >= 0 && newmat->cmap->N != N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"Inconsistent # of cols:Matrix in file has (%D) and input matrix has (%D)",newmat->cmap->N,N); 34544683f7a4SShri Abhyankar 3455ce94432eSBarry Smith if (M != N) SETERRQ(PetscObjectComm((PetscObject)viewer),PETSC_ERR_SUP,"Can only do square matrices"); 34564683f7a4SShri Abhyankar 34574683f7a4SShri Abhyankar /* 34584683f7a4SShri Abhyankar This code adds extra rows to make sure the number of rows is 34594683f7a4SShri Abhyankar divisible by the blocksize 34604683f7a4SShri Abhyankar */ 34614683f7a4SShri Abhyankar Mbs = M/bs; 34624683f7a4SShri Abhyankar extra_rows = bs - M + bs*Mbs; 34634683f7a4SShri Abhyankar if (extra_rows == bs) extra_rows = 0; 34644683f7a4SShri Abhyankar else Mbs++; 34654683f7a4SShri Abhyankar if (extra_rows && !rank) { 34664683f7a4SShri Abhyankar ierr = PetscInfo(viewer,"Padding loaded matrix to match blocksize\n");CHKERRQ(ierr); 34674683f7a4SShri Abhyankar } 34684683f7a4SShri Abhyankar 34694683f7a4SShri Abhyankar /* determine ownership of all rows */ 34704683f7a4SShri Abhyankar if (newmat->rmap->n < 0) { /* PETSC_DECIDE */ 34714683f7a4SShri Abhyankar mbs = Mbs/size + ((Mbs % size) > rank); 34724683f7a4SShri Abhyankar m = mbs*bs; 34734683f7a4SShri Abhyankar } else { /* User set */ 34744683f7a4SShri Abhyankar m = newmat->rmap->n; 34754683f7a4SShri Abhyankar mbs = m/bs; 34764683f7a4SShri Abhyankar } 3477dcca6d9dSJed Brown ierr = PetscMalloc2(size+1,&rowners,size+1,&browners);CHKERRQ(ierr); 34784683f7a4SShri Abhyankar ierr = MPI_Allgather(&mbs,1,MPIU_INT,rowners+1,1,MPIU_INT,comm);CHKERRQ(ierr); 34794683f7a4SShri Abhyankar 34804683f7a4SShri Abhyankar /* process 0 needs enough room for process with most rows */ 34814683f7a4SShri Abhyankar if (!rank) { 34824683f7a4SShri Abhyankar mmax = rowners[1]; 34831251c579SMatthew G Knepley for (i=2; i<=size; i++) { 34844683f7a4SShri Abhyankar mmax = PetscMax(mmax,rowners[i]); 34854683f7a4SShri Abhyankar } 34864683f7a4SShri Abhyankar mmax*=bs; 34873964eb88SJed Brown } else mmax = -1; /* unused, but compiler warns anyway */ 34884683f7a4SShri Abhyankar 34894683f7a4SShri Abhyankar rowners[0] = 0; 34904683f7a4SShri Abhyankar for (i=2; i<=size; i++) rowners[i] += rowners[i-1]; 34914683f7a4SShri Abhyankar for (i=0; i<=size; i++) browners[i] = rowners[i]*bs; 34924683f7a4SShri Abhyankar rstart = rowners[rank]; 34934683f7a4SShri Abhyankar rend = rowners[rank+1]; 34944683f7a4SShri Abhyankar 34954683f7a4SShri Abhyankar /* distribute row lengths to all processors */ 3496785e854fSJed Brown ierr = PetscMalloc1(m,&locrowlens);CHKERRQ(ierr); 34974683f7a4SShri Abhyankar if (!rank) { 34984683f7a4SShri Abhyankar mend = m; 34994683f7a4SShri Abhyankar if (size == 1) mend = mend - extra_rows; 35004683f7a4SShri Abhyankar ierr = PetscBinaryRead(fd,locrowlens,mend,PETSC_INT);CHKERRQ(ierr); 35014683f7a4SShri Abhyankar for (j=mend; j<m; j++) locrowlens[j] = 1; 3502785e854fSJed Brown ierr = PetscMalloc1(mmax,&rowlengths);CHKERRQ(ierr); 35031795a4d1SJed Brown ierr = PetscCalloc1(size,&procsnz);CHKERRQ(ierr); 35044683f7a4SShri Abhyankar for (j=0; j<m; j++) { 35054683f7a4SShri Abhyankar procsnz[0] += locrowlens[j]; 35064683f7a4SShri Abhyankar } 35074683f7a4SShri Abhyankar for (i=1; i<size; i++) { 35084683f7a4SShri Abhyankar mend = browners[i+1] - browners[i]; 35094683f7a4SShri Abhyankar if (i == size-1) mend = mend - extra_rows; 35104683f7a4SShri Abhyankar ierr = PetscBinaryRead(fd,rowlengths,mend,PETSC_INT);CHKERRQ(ierr); 35114683f7a4SShri Abhyankar for (j=mend; j<browners[i+1] - browners[i]; j++) rowlengths[j] = 1; 35124683f7a4SShri Abhyankar /* calculate the number of nonzeros on each processor */ 35134683f7a4SShri Abhyankar for (j=0; j<browners[i+1]-browners[i]; j++) { 35144683f7a4SShri Abhyankar procsnz[i] += rowlengths[j]; 35154683f7a4SShri Abhyankar } 35164683f7a4SShri Abhyankar ierr = MPI_Send(rowlengths,browners[i+1]-browners[i],MPIU_INT,i,tag,comm);CHKERRQ(ierr); 35174683f7a4SShri Abhyankar } 35184683f7a4SShri Abhyankar ierr = PetscFree(rowlengths);CHKERRQ(ierr); 35194683f7a4SShri Abhyankar } else { 35204683f7a4SShri Abhyankar ierr = MPI_Recv(locrowlens,m,MPIU_INT,0,tag,comm,&status);CHKERRQ(ierr); 35214683f7a4SShri Abhyankar } 35224683f7a4SShri Abhyankar 35234683f7a4SShri Abhyankar if (!rank) { 35244683f7a4SShri Abhyankar /* determine max buffer needed and allocate it */ 35254683f7a4SShri Abhyankar maxnz = procsnz[0]; 35264683f7a4SShri Abhyankar for (i=1; i<size; i++) { 35274683f7a4SShri Abhyankar maxnz = PetscMax(maxnz,procsnz[i]); 35284683f7a4SShri Abhyankar } 3529785e854fSJed Brown ierr = PetscMalloc1(maxnz,&cols);CHKERRQ(ierr); 35304683f7a4SShri Abhyankar 35314683f7a4SShri Abhyankar /* read in my part of the matrix column indices */ 35324683f7a4SShri Abhyankar nz = procsnz[0]; 3533854ce69bSBarry Smith ierr = PetscMalloc1(nz+1,&ibuf);CHKERRQ(ierr); 35344683f7a4SShri Abhyankar mycols = ibuf; 35354683f7a4SShri Abhyankar if (size == 1) nz -= extra_rows; 35364683f7a4SShri Abhyankar ierr = PetscBinaryRead(fd,mycols,nz,PETSC_INT);CHKERRQ(ierr); 353726fbe8dcSKarl Rupp if (size == 1) { 353826fbe8dcSKarl Rupp for (i=0; i< extra_rows; i++) mycols[nz+i] = M+i; 353926fbe8dcSKarl Rupp } 35404683f7a4SShri Abhyankar 35414683f7a4SShri Abhyankar /* read in every ones (except the last) and ship off */ 35424683f7a4SShri Abhyankar for (i=1; i<size-1; i++) { 35434683f7a4SShri Abhyankar nz = procsnz[i]; 35444683f7a4SShri Abhyankar ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr); 35454683f7a4SShri Abhyankar ierr = MPI_Send(cols,nz,MPIU_INT,i,tag,comm);CHKERRQ(ierr); 35464683f7a4SShri Abhyankar } 35474683f7a4SShri Abhyankar /* read in the stuff for the last proc */ 35484683f7a4SShri Abhyankar if (size != 1) { 35494683f7a4SShri Abhyankar nz = procsnz[size-1] - extra_rows; /* the extra rows are not on the disk */ 35504683f7a4SShri Abhyankar ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr); 35514683f7a4SShri Abhyankar for (i=0; i<extra_rows; i++) cols[nz+i] = M+i; 35524683f7a4SShri Abhyankar ierr = MPI_Send(cols,nz+extra_rows,MPIU_INT,size-1,tag,comm);CHKERRQ(ierr); 35534683f7a4SShri Abhyankar } 35544683f7a4SShri Abhyankar ierr = PetscFree(cols);CHKERRQ(ierr); 35554683f7a4SShri Abhyankar } else { 35564683f7a4SShri Abhyankar /* determine buffer space needed for message */ 35574683f7a4SShri Abhyankar nz = 0; 35584683f7a4SShri Abhyankar for (i=0; i<m; i++) { 35594683f7a4SShri Abhyankar nz += locrowlens[i]; 35604683f7a4SShri Abhyankar } 3561854ce69bSBarry Smith ierr = PetscMalloc1(nz+1,&ibuf);CHKERRQ(ierr); 35624683f7a4SShri Abhyankar mycols = ibuf; 35634683f7a4SShri Abhyankar /* receive message of column indices*/ 35644683f7a4SShri Abhyankar ierr = MPI_Recv(mycols,nz,MPIU_INT,0,tag,comm,&status);CHKERRQ(ierr); 35654683f7a4SShri Abhyankar ierr = MPI_Get_count(&status,MPIU_INT,&maxnz);CHKERRQ(ierr); 35664683f7a4SShri Abhyankar if (maxnz != nz) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 35674683f7a4SShri Abhyankar } 35684683f7a4SShri Abhyankar 35694683f7a4SShri Abhyankar /* loop over local rows, determining number of off diagonal entries */ 3570dcca6d9dSJed Brown ierr = PetscMalloc2(rend-rstart,&dlens,rend-rstart,&odlens);CHKERRQ(ierr); 35711795a4d1SJed Brown ierr = PetscCalloc3(Mbs,&mask,Mbs,&masked1,Mbs,&masked2);CHKERRQ(ierr); 35724683f7a4SShri Abhyankar rowcount = 0; nzcount = 0; 35734683f7a4SShri Abhyankar for (i=0; i<mbs; i++) { 35744683f7a4SShri Abhyankar dcount = 0; 35754683f7a4SShri Abhyankar odcount = 0; 35764683f7a4SShri Abhyankar for (j=0; j<bs; j++) { 35774683f7a4SShri Abhyankar kmax = locrowlens[rowcount]; 35784683f7a4SShri Abhyankar for (k=0; k<kmax; k++) { 35794683f7a4SShri Abhyankar tmp = mycols[nzcount++]/bs; 35804683f7a4SShri Abhyankar if (!mask[tmp]) { 35814683f7a4SShri Abhyankar mask[tmp] = 1; 35824683f7a4SShri Abhyankar if (tmp < rstart || tmp >= rend) masked2[odcount++] = tmp; 35834683f7a4SShri Abhyankar else masked1[dcount++] = tmp; 35844683f7a4SShri Abhyankar } 35854683f7a4SShri Abhyankar } 35864683f7a4SShri Abhyankar rowcount++; 35874683f7a4SShri Abhyankar } 35884683f7a4SShri Abhyankar 35894683f7a4SShri Abhyankar dlens[i] = dcount; 35904683f7a4SShri Abhyankar odlens[i] = odcount; 35914683f7a4SShri Abhyankar 35924683f7a4SShri Abhyankar /* zero out the mask elements we set */ 35934683f7a4SShri Abhyankar for (j=0; j<dcount; j++) mask[masked1[j]] = 0; 35944683f7a4SShri Abhyankar for (j=0; j<odcount; j++) mask[masked2[j]] = 0; 35954683f7a4SShri Abhyankar } 35964683f7a4SShri Abhyankar 35974683f7a4SShri Abhyankar ierr = MatSetSizes(newmat,m,m,M+extra_rows,N+extra_rows);CHKERRQ(ierr); 35984683f7a4SShri Abhyankar ierr = MatMPIBAIJSetPreallocation(newmat,bs,0,dlens,0,odlens);CHKERRQ(ierr); 35994683f7a4SShri Abhyankar 36004683f7a4SShri Abhyankar if (!rank) { 3601854ce69bSBarry Smith ierr = PetscMalloc1(maxnz+1,&buf);CHKERRQ(ierr); 36024683f7a4SShri Abhyankar /* read in my part of the matrix numerical values */ 36034683f7a4SShri Abhyankar nz = procsnz[0]; 36044683f7a4SShri Abhyankar vals = buf; 36054683f7a4SShri Abhyankar mycols = ibuf; 36064683f7a4SShri Abhyankar if (size == 1) nz -= extra_rows; 36074683f7a4SShri Abhyankar ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 360826fbe8dcSKarl Rupp if (size == 1) { 360926fbe8dcSKarl Rupp for (i=0; i< extra_rows; i++) vals[nz+i] = 1.0; 361026fbe8dcSKarl Rupp } 36114683f7a4SShri Abhyankar 36124683f7a4SShri Abhyankar /* insert into matrix */ 36134683f7a4SShri Abhyankar jj = rstart*bs; 36144683f7a4SShri Abhyankar for (i=0; i<m; i++) { 36154683f7a4SShri Abhyankar ierr = MatSetValues_MPIBAIJ(newmat,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr); 36164683f7a4SShri Abhyankar mycols += locrowlens[i]; 36174683f7a4SShri Abhyankar vals += locrowlens[i]; 36184683f7a4SShri Abhyankar jj++; 36194683f7a4SShri Abhyankar } 36204683f7a4SShri Abhyankar /* read in other processors (except the last one) and ship out */ 36214683f7a4SShri Abhyankar for (i=1; i<size-1; i++) { 36224683f7a4SShri Abhyankar nz = procsnz[i]; 36234683f7a4SShri Abhyankar vals = buf; 36244683f7a4SShri Abhyankar ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 3625479e424cSMichael Lange ierr = MPIULong_Send(vals,nz,MPIU_SCALAR,i,((PetscObject)newmat)->tag,comm);CHKERRQ(ierr); 36264683f7a4SShri Abhyankar } 36274683f7a4SShri Abhyankar /* the last proc */ 36284683f7a4SShri Abhyankar if (size != 1) { 36294683f7a4SShri Abhyankar nz = procsnz[i] - extra_rows; 36304683f7a4SShri Abhyankar vals = buf; 36314683f7a4SShri Abhyankar ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 36324683f7a4SShri Abhyankar for (i=0; i<extra_rows; i++) vals[nz+i] = 1.0; 3633479e424cSMichael Lange ierr = MPIULong_Send(vals,nz+extra_rows,MPIU_SCALAR,size-1,((PetscObject)newmat)->tag,comm);CHKERRQ(ierr); 36344683f7a4SShri Abhyankar } 36354683f7a4SShri Abhyankar ierr = PetscFree(procsnz);CHKERRQ(ierr); 36364683f7a4SShri Abhyankar } else { 36374683f7a4SShri Abhyankar /* receive numeric values */ 3638854ce69bSBarry Smith ierr = PetscMalloc1(nz+1,&buf);CHKERRQ(ierr); 36394683f7a4SShri Abhyankar 36404683f7a4SShri Abhyankar /* receive message of values*/ 36414683f7a4SShri Abhyankar vals = buf; 36424683f7a4SShri Abhyankar mycols = ibuf; 3643479e424cSMichael Lange ierr = MPIULong_Recv(vals,nz,MPIU_SCALAR,0,((PetscObject)newmat)->tag,comm);CHKERRQ(ierr); 36444683f7a4SShri Abhyankar 36454683f7a4SShri Abhyankar /* insert into matrix */ 36464683f7a4SShri Abhyankar jj = rstart*bs; 36474683f7a4SShri Abhyankar for (i=0; i<m; i++) { 36484683f7a4SShri Abhyankar ierr = MatSetValues_MPIBAIJ(newmat,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr); 36494683f7a4SShri Abhyankar mycols += locrowlens[i]; 36504683f7a4SShri Abhyankar vals += locrowlens[i]; 36514683f7a4SShri Abhyankar jj++; 36524683f7a4SShri Abhyankar } 36534683f7a4SShri Abhyankar } 36544683f7a4SShri Abhyankar ierr = PetscFree(locrowlens);CHKERRQ(ierr); 36554683f7a4SShri Abhyankar ierr = PetscFree(buf);CHKERRQ(ierr); 36564683f7a4SShri Abhyankar ierr = PetscFree(ibuf);CHKERRQ(ierr); 36574683f7a4SShri Abhyankar ierr = PetscFree2(rowners,browners);CHKERRQ(ierr); 36584683f7a4SShri Abhyankar ierr = PetscFree2(dlens,odlens);CHKERRQ(ierr); 36594683f7a4SShri Abhyankar ierr = PetscFree3(mask,masked1,masked2);CHKERRQ(ierr); 36604683f7a4SShri Abhyankar ierr = MatAssemblyBegin(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 36614683f7a4SShri Abhyankar ierr = MatAssemblyEnd(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 36624683f7a4SShri Abhyankar PetscFunctionReturn(0); 36634683f7a4SShri Abhyankar } 36644683f7a4SShri Abhyankar 3665133cdb44SSatish Balay /*@ 3666133cdb44SSatish Balay MatMPIBAIJSetHashTableFactor - Sets the factor required to compute the size of the HashTable. 3667133cdb44SSatish Balay 3668133cdb44SSatish Balay Input Parameters: 3669133cdb44SSatish Balay . mat - the matrix 3670133cdb44SSatish Balay . fact - factor 3671133cdb44SSatish Balay 3672c5eb9154SBarry Smith Not Collective, each process can use a different factor 3673fee21e36SBarry Smith 36748c890885SBarry Smith Level: advanced 36758c890885SBarry Smith 3676133cdb44SSatish Balay Notes: 36778c07d4e3SBarry Smith This can also be set by the command line option: -mat_use_hash_table <fact> 3678133cdb44SSatish Balay 3679133cdb44SSatish Balay .keywords: matrix, hashtable, factor, HT 3680133cdb44SSatish Balay 3681133cdb44SSatish Balay .seealso: MatSetOption() 3682133cdb44SSatish Balay @*/ 36837087cfbeSBarry Smith PetscErrorCode MatMPIBAIJSetHashTableFactor(Mat mat,PetscReal fact) 3684133cdb44SSatish Balay { 36854ac538c5SBarry Smith PetscErrorCode ierr; 36865bf65638SKris Buschelman 36875bf65638SKris Buschelman PetscFunctionBegin; 36884ac538c5SBarry Smith ierr = PetscTryMethod(mat,"MatSetHashTableFactor_C",(Mat,PetscReal),(mat,fact));CHKERRQ(ierr); 36895bf65638SKris Buschelman PetscFunctionReturn(0); 36905bf65638SKris Buschelman } 36915bf65638SKris Buschelman 36927087cfbeSBarry Smith PetscErrorCode MatSetHashTableFactor_MPIBAIJ(Mat mat,PetscReal fact) 36935bf65638SKris Buschelman { 369425fdafccSSatish Balay Mat_MPIBAIJ *baij; 3695133cdb44SSatish Balay 3696133cdb44SSatish Balay PetscFunctionBegin; 3697133cdb44SSatish Balay baij = (Mat_MPIBAIJ*)mat->data; 3698133cdb44SSatish Balay baij->ht_fact = fact; 3699133cdb44SSatish Balay PetscFunctionReturn(0); 3700133cdb44SSatish Balay } 3701f2a5309cSSatish Balay 37029230625dSJed Brown PetscErrorCode MatMPIBAIJGetSeqBAIJ(Mat A,Mat *Ad,Mat *Ao,const PetscInt *colmap[]) 3703f2a5309cSSatish Balay { 3704f2a5309cSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 3705ab4d48faSStefano Zampini PetscBool flg; 3706ab4d48faSStefano Zampini PetscErrorCode ierr; 37075fd66863SKarl Rupp 3708f2a5309cSSatish Balay PetscFunctionBegin; 3709ab4d48faSStefano Zampini ierr = PetscObjectTypeCompare((PetscObject)A,MATMPIBAIJ,&flg);CHKERRQ(ierr); 3710ab4d48faSStefano Zampini if (!flg) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_SUP,"This function requires a MATMPIBAIJ matrix as input"); 371121e72a00SBarry Smith if (Ad) *Ad = a->A; 371221e72a00SBarry Smith if (Ao) *Ao = a->B; 371321e72a00SBarry Smith if (colmap) *colmap = a->garray; 3714f2a5309cSSatish Balay PetscFunctionReturn(0); 3715f2a5309cSSatish Balay } 371685535b8eSBarry Smith 371785535b8eSBarry Smith /* 371885535b8eSBarry Smith Special version for direct calls from Fortran (to eliminate two function call overheads 371985535b8eSBarry Smith */ 372085535b8eSBarry Smith #if defined(PETSC_HAVE_FORTRAN_CAPS) 372185535b8eSBarry Smith #define matmpibaijsetvaluesblocked_ MATMPIBAIJSETVALUESBLOCKED 372285535b8eSBarry Smith #elif !defined(PETSC_HAVE_FORTRAN_UNDERSCORE) 372385535b8eSBarry Smith #define matmpibaijsetvaluesblocked_ matmpibaijsetvaluesblocked 372485535b8eSBarry Smith #endif 372585535b8eSBarry Smith 372685535b8eSBarry Smith /*@C 372785535b8eSBarry Smith MatMPIBAIJSetValuesBlocked - Direct Fortran call to replace call to MatSetValuesBlocked() 372885535b8eSBarry Smith 372985535b8eSBarry Smith Collective on Mat 373085535b8eSBarry Smith 373185535b8eSBarry Smith Input Parameters: 373285535b8eSBarry Smith + mat - the matrix 373385535b8eSBarry Smith . min - number of input rows 373485535b8eSBarry Smith . im - input rows 373585535b8eSBarry Smith . nin - number of input columns 373685535b8eSBarry Smith . in - input columns 373785535b8eSBarry Smith . v - numerical values input 373885535b8eSBarry Smith - addvin - INSERT_VALUES or ADD_VALUES 373985535b8eSBarry Smith 374095452b02SPatrick Sanan Notes: 374195452b02SPatrick Sanan This has a complete copy of MatSetValuesBlocked_MPIBAIJ() which is terrible code un-reuse. 374285535b8eSBarry Smith 374385535b8eSBarry Smith Level: advanced 374485535b8eSBarry Smith 374585535b8eSBarry Smith .seealso: MatSetValuesBlocked() 374685535b8eSBarry Smith @*/ 374785535b8eSBarry Smith PetscErrorCode matmpibaijsetvaluesblocked_(Mat *matin,PetscInt *min,const PetscInt im[],PetscInt *nin,const PetscInt in[],const MatScalar v[],InsertMode *addvin) 374885535b8eSBarry Smith { 374985535b8eSBarry Smith /* convert input arguments to C version */ 375085535b8eSBarry Smith Mat mat = *matin; 375185535b8eSBarry Smith PetscInt m = *min, n = *nin; 375285535b8eSBarry Smith InsertMode addv = *addvin; 375385535b8eSBarry Smith 375485535b8eSBarry Smith Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 375585535b8eSBarry Smith const MatScalar *value; 375685535b8eSBarry Smith MatScalar *barray = baij->barray; 3757ace3abfcSBarry Smith PetscBool roworiented = baij->roworiented; 375885535b8eSBarry Smith PetscErrorCode ierr; 375985535b8eSBarry Smith PetscInt i,j,ii,jj,row,col,rstart=baij->rstartbs; 376085535b8eSBarry Smith PetscInt rend=baij->rendbs,cstart=baij->cstartbs,stepval; 3761d0f46423SBarry Smith PetscInt cend=baij->cendbs,bs=mat->rmap->bs,bs2=baij->bs2; 376285535b8eSBarry Smith 376385535b8eSBarry Smith PetscFunctionBegin; 376485535b8eSBarry Smith /* tasks normally handled by MatSetValuesBlocked() */ 376526fbe8dcSKarl Rupp if (mat->insertmode == NOT_SET_VALUES) mat->insertmode = addv; 376685535b8eSBarry Smith #if defined(PETSC_USE_DEBUG) 3767e7e72b3dSBarry Smith else if (mat->insertmode != addv) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Cannot mix add values and insert values"); 3768e32f2f54SBarry Smith if (mat->factortype) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Not for factored matrix"); 376985535b8eSBarry Smith #endif 377085535b8eSBarry Smith if (mat->assembled) { 377185535b8eSBarry Smith mat->was_assembled = PETSC_TRUE; 377285535b8eSBarry Smith mat->assembled = PETSC_FALSE; 377385535b8eSBarry Smith } 377485535b8eSBarry Smith ierr = PetscLogEventBegin(MAT_SetValues,mat,0,0,0);CHKERRQ(ierr); 377585535b8eSBarry Smith 377685535b8eSBarry Smith 377785535b8eSBarry Smith if (!barray) { 3778785e854fSJed Brown ierr = PetscMalloc1(bs2,&barray);CHKERRQ(ierr); 377985535b8eSBarry Smith baij->barray = barray; 378085535b8eSBarry Smith } 378185535b8eSBarry Smith 378226fbe8dcSKarl Rupp if (roworiented) stepval = (n-1)*bs; 378326fbe8dcSKarl Rupp else stepval = (m-1)*bs; 378426fbe8dcSKarl Rupp 378585535b8eSBarry Smith for (i=0; i<m; i++) { 378685535b8eSBarry Smith if (im[i] < 0) continue; 378785535b8eSBarry Smith #if defined(PETSC_USE_DEBUG) 3788e32f2f54SBarry Smith if (im[i] >= baij->Mbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large, row %D max %D",im[i],baij->Mbs-1); 378985535b8eSBarry Smith #endif 379085535b8eSBarry Smith if (im[i] >= rstart && im[i] < rend) { 379185535b8eSBarry Smith row = im[i] - rstart; 379285535b8eSBarry Smith for (j=0; j<n; j++) { 379385535b8eSBarry Smith /* If NumCol = 1 then a copy is not required */ 379485535b8eSBarry Smith if ((roworiented) && (n == 1)) { 379585535b8eSBarry Smith barray = (MatScalar*)v + i*bs2; 379685535b8eSBarry Smith } else if ((!roworiented) && (m == 1)) { 379785535b8eSBarry Smith barray = (MatScalar*)v + j*bs2; 379885535b8eSBarry Smith } else { /* Here a copy is required */ 379985535b8eSBarry Smith if (roworiented) { 380085535b8eSBarry Smith value = v + i*(stepval+bs)*bs + j*bs; 380185535b8eSBarry Smith } else { 380285535b8eSBarry Smith value = v + j*(stepval+bs)*bs + i*bs; 380385535b8eSBarry Smith } 380485535b8eSBarry Smith for (ii=0; ii<bs; ii++,value+=stepval) { 380585535b8eSBarry Smith for (jj=0; jj<bs; jj++) { 380685535b8eSBarry Smith *barray++ = *value++; 380785535b8eSBarry Smith } 380885535b8eSBarry Smith } 380985535b8eSBarry Smith barray -=bs2; 381085535b8eSBarry Smith } 381185535b8eSBarry Smith 381285535b8eSBarry Smith if (in[j] >= cstart && in[j] < cend) { 381385535b8eSBarry Smith col = in[j] - cstart; 38148ab52850SBarry Smith ierr = MatSetValuesBlocked_SeqBAIJ_Inlined(baij->A,row,col,barray,addv,im[i],in[j]);CHKERRQ(ierr); 381526fbe8dcSKarl Rupp } else if (in[j] < 0) continue; 381685535b8eSBarry Smith #if defined(PETSC_USE_DEBUG) 3817cb9801acSJed Brown else if (in[j] >= baij->Nbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large, col %D max %D",in[j],baij->Nbs-1); 381885535b8eSBarry Smith #endif 381985535b8eSBarry Smith else { 382085535b8eSBarry Smith if (mat->was_assembled) { 382185535b8eSBarry Smith if (!baij->colmap) { 3822ab9863d7SBarry Smith ierr = MatCreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 382385535b8eSBarry Smith } 382485535b8eSBarry Smith 382585535b8eSBarry Smith #if defined(PETSC_USE_DEBUG) 382685535b8eSBarry Smith #if defined(PETSC_USE_CTABLE) 382785535b8eSBarry Smith { PetscInt data; 382885535b8eSBarry Smith ierr = PetscTableFind(baij->colmap,in[j]+1,&data);CHKERRQ(ierr); 3829e32f2f54SBarry Smith if ((data - 1) % bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap"); 383085535b8eSBarry Smith } 383185535b8eSBarry Smith #else 3832e32f2f54SBarry Smith if ((baij->colmap[in[j]] - 1) % bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap"); 383385535b8eSBarry Smith #endif 383485535b8eSBarry Smith #endif 383585535b8eSBarry Smith #if defined(PETSC_USE_CTABLE) 383685535b8eSBarry Smith ierr = PetscTableFind(baij->colmap,in[j]+1,&col);CHKERRQ(ierr); 383785535b8eSBarry Smith col = (col - 1)/bs; 383885535b8eSBarry Smith #else 383985535b8eSBarry Smith col = (baij->colmap[in[j]] - 1)/bs; 384085535b8eSBarry Smith #endif 384185535b8eSBarry Smith if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) { 3842ab9863d7SBarry Smith ierr = MatDisAssemble_MPIBAIJ(mat);CHKERRQ(ierr); 384385535b8eSBarry Smith col = in[j]; 384485535b8eSBarry Smith } 384526fbe8dcSKarl Rupp } else col = in[j]; 38468ab52850SBarry Smith ierr = MatSetValuesBlocked_SeqBAIJ_Inlined(baij->B,row,col,barray,addv,im[i],in[j]);CHKERRQ(ierr); 384785535b8eSBarry Smith } 384885535b8eSBarry Smith } 384985535b8eSBarry Smith } else { 385085535b8eSBarry Smith if (!baij->donotstash) { 385185535b8eSBarry Smith if (roworiented) { 385285535b8eSBarry Smith ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 385385535b8eSBarry Smith } else { 385485535b8eSBarry Smith ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 385585535b8eSBarry Smith } 385685535b8eSBarry Smith } 385785535b8eSBarry Smith } 385885535b8eSBarry Smith } 385985535b8eSBarry Smith 386085535b8eSBarry Smith /* task normally handled by MatSetValuesBlocked() */ 386185535b8eSBarry Smith ierr = PetscLogEventEnd(MAT_SetValues,mat,0,0,0);CHKERRQ(ierr); 386285535b8eSBarry Smith PetscFunctionReturn(0); 386385535b8eSBarry Smith } 3864dfb205c3SBarry Smith 3865dfb205c3SBarry Smith /*@ 3866483a2f95SBarry Smith MatCreateMPIBAIJWithArrays - creates a MPI BAIJ matrix using arrays that contain in standard block 3867dfb205c3SBarry Smith CSR format the local rows. 3868dfb205c3SBarry Smith 3869dfb205c3SBarry Smith Collective on MPI_Comm 3870dfb205c3SBarry Smith 3871dfb205c3SBarry Smith Input Parameters: 3872dfb205c3SBarry Smith + comm - MPI communicator 3873dfb205c3SBarry Smith . bs - the block size, only a block size of 1 is supported 3874dfb205c3SBarry Smith . m - number of local rows (Cannot be PETSC_DECIDE) 3875dfb205c3SBarry Smith . n - This value should be the same as the local size used in creating the 3876dfb205c3SBarry Smith x vector for the matrix-vector product y = Ax. (or PETSC_DECIDE to have 3877dfb205c3SBarry Smith calculated if N is given) For square matrices n is almost always m. 3878dfb205c3SBarry Smith . M - number of global rows (or PETSC_DETERMINE to have calculated if m is given) 3879dfb205c3SBarry Smith . N - number of global columns (or PETSC_DETERMINE to have calculated if n is given) 3880483a2f95SBarry Smith . i - row indices; that is i[0] = 0, i[row] = i[row-1] + number of block elements in that rowth block row of the matrix 3881dfb205c3SBarry Smith . j - column indices 3882dfb205c3SBarry Smith - a - matrix values 3883dfb205c3SBarry Smith 3884dfb205c3SBarry Smith Output Parameter: 3885dfb205c3SBarry Smith . mat - the matrix 3886dfb205c3SBarry Smith 3887dfb205c3SBarry Smith Level: intermediate 3888dfb205c3SBarry Smith 3889dfb205c3SBarry Smith Notes: 3890dfb205c3SBarry Smith The i, j, and a arrays ARE copied by this routine into the internal format used by PETSc; 3891dfb205c3SBarry Smith thus you CANNOT change the matrix entries by changing the values of a[] after you have 3892dfb205c3SBarry Smith called this routine. Use MatCreateMPIAIJWithSplitArrays() to avoid needing to copy the arrays. 3893dfb205c3SBarry Smith 38943adadaf3SJed Brown The order of the entries in values is the same as the block compressed sparse row storage format; that is, it is 38953adadaf3SJed Brown the same as a three dimensional array in Fortran values(bs,bs,nnz) that contains the first column of the first 38963adadaf3SJed Brown block, followed by the second column of the first block etc etc. That is, the blocks are contiguous in memory 38973adadaf3SJed Brown with column-major ordering within blocks. 38983adadaf3SJed Brown 3899dfb205c3SBarry Smith The i and j indices are 0 based, and i indices are indices corresponding to the local j array. 3900dfb205c3SBarry Smith 3901dfb205c3SBarry Smith .keywords: matrix, aij, compressed row, sparse, parallel 3902dfb205c3SBarry Smith 3903dfb205c3SBarry Smith .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatMPIAIJSetPreallocation(), MatMPIAIJSetPreallocationCSR(), 390469b1f4b7SBarry Smith MPIAIJ, MatCreateAIJ(), MatCreateMPIAIJWithSplitArrays() 3905dfb205c3SBarry Smith @*/ 39067087cfbeSBarry Smith PetscErrorCode MatCreateMPIBAIJWithArrays(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,const PetscInt i[],const PetscInt j[],const PetscScalar a[],Mat *mat) 3907dfb205c3SBarry Smith { 3908dfb205c3SBarry Smith PetscErrorCode ierr; 3909dfb205c3SBarry Smith 3910dfb205c3SBarry Smith PetscFunctionBegin; 3911f23aa3ddSBarry Smith if (i[0]) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"i (row indices) must start with 0"); 3912dfb205c3SBarry Smith if (m < 0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"local number of rows (m) cannot be PETSC_DECIDE, or negative"); 3913dfb205c3SBarry Smith ierr = MatCreate(comm,mat);CHKERRQ(ierr); 3914dfb205c3SBarry Smith ierr = MatSetSizes(*mat,m,n,M,N);CHKERRQ(ierr); 39159a43d2d5SJed Brown ierr = MatSetType(*mat,MATMPIBAIJ);CHKERRQ(ierr); 391627f91139SJed Brown ierr = MatSetBlockSize(*mat,bs);CHKERRQ(ierr); 391727f91139SJed Brown ierr = MatSetUp(*mat);CHKERRQ(ierr); 3918d47bf9aaSJed Brown ierr = MatSetOption(*mat,MAT_ROW_ORIENTED,PETSC_FALSE);CHKERRQ(ierr); 3919dfb205c3SBarry Smith ierr = MatMPIBAIJSetPreallocationCSR(*mat,bs,i,j,a);CHKERRQ(ierr); 3920d47bf9aaSJed Brown ierr = MatSetOption(*mat,MAT_ROW_ORIENTED,PETSC_TRUE);CHKERRQ(ierr); 3921dfb205c3SBarry Smith PetscFunctionReturn(0); 3922dfb205c3SBarry Smith } 3923e561ad89SHong Zhang 3924bd153df0SHong Zhang PetscErrorCode MatCreateMPIMatConcatenateSeqMat_MPIBAIJ(MPI_Comm comm,Mat inmat,PetscInt n,MatReuse scall,Mat *outmat) 3925e561ad89SHong Zhang { 3926e561ad89SHong Zhang PetscErrorCode ierr; 3927bd153df0SHong Zhang PetscInt m,N,i,rstart,nnz,Ii,bs,cbs; 3928bd153df0SHong Zhang PetscInt *indx; 3929bd153df0SHong Zhang PetscScalar *values; 3930e561ad89SHong Zhang 3931e561ad89SHong Zhang PetscFunctionBegin; 3932e561ad89SHong Zhang ierr = MatGetSize(inmat,&m,&N);CHKERRQ(ierr); 3933bd153df0SHong Zhang if (scall == MAT_INITIAL_MATRIX) { /* symbolic phase */ 3934bd153df0SHong Zhang Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)inmat->data; 39352c6ba4edSHong Zhang PetscInt *dnz,*onz,mbs,Nbs,nbs; 3936bd153df0SHong Zhang PetscInt *bindx,rmax=a->rmax,j; 393777f764caSHong Zhang PetscMPIInt rank,size; 3938e561ad89SHong Zhang 3939bd153df0SHong Zhang ierr = MatGetBlockSizes(inmat,&bs,&cbs);CHKERRQ(ierr); 3940bd153df0SHong Zhang mbs = m/bs; Nbs = N/cbs; 3941bd153df0SHong Zhang if (n == PETSC_DECIDE) { 394277f764caSHong Zhang nbs = n; 394377f764caSHong Zhang ierr = PetscSplitOwnership(comm,&nbs,&Nbs);CHKERRQ(ierr); 394477f764caSHong Zhang n = nbs*cbs; 394577f764caSHong Zhang } else { 394677f764caSHong Zhang nbs = n/cbs; 3947bd153df0SHong Zhang } 3948e561ad89SHong Zhang 3949647a6520SHong Zhang ierr = PetscMalloc1(rmax,&bindx);CHKERRQ(ierr); 395077f764caSHong Zhang ierr = MatPreallocateInitialize(comm,mbs,nbs,dnz,onz);CHKERRQ(ierr); /* inline function, output __end and __rstart are used below */ 395177f764caSHong Zhang 395277f764caSHong Zhang ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 395377f764caSHong Zhang ierr = MPI_Comm_rank(comm,&size);CHKERRQ(ierr); 395477f764caSHong Zhang if (rank == size-1) { 395577f764caSHong Zhang /* Check sum(nbs) = Nbs */ 39562c6ba4edSHong Zhang if (__end != Nbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"Sum of local block columns %D != global block columns %D",__end,Nbs); 395777f764caSHong Zhang } 395877f764caSHong Zhang 395977f764caSHong Zhang rstart = __rstart; /* block rstart of *outmat; see inline function MatPreallocateInitialize */ 3960bd153df0SHong Zhang for (i=0; i<mbs; i++) { 3961647a6520SHong Zhang ierr = MatGetRow_SeqBAIJ(inmat,i*bs,&nnz,&indx,NULL);CHKERRQ(ierr); /* non-blocked nnz and indx */ 3962647a6520SHong Zhang nnz = nnz/bs; 3963647a6520SHong Zhang for (j=0; j<nnz; j++) bindx[j] = indx[j*bs]/bs; 3964647a6520SHong Zhang ierr = MatPreallocateSet(i+rstart,nnz,bindx,dnz,onz);CHKERRQ(ierr); 3965647a6520SHong Zhang ierr = MatRestoreRow_SeqBAIJ(inmat,i*bs,&nnz,&indx,NULL);CHKERRQ(ierr); 3966e561ad89SHong Zhang } 3967647a6520SHong Zhang ierr = PetscFree(bindx);CHKERRQ(ierr); 3968e561ad89SHong Zhang 3969e561ad89SHong Zhang ierr = MatCreate(comm,outmat);CHKERRQ(ierr); 397077f764caSHong Zhang ierr = MatSetSizes(*outmat,m,n,PETSC_DETERMINE,PETSC_DETERMINE);CHKERRQ(ierr); 3971e561ad89SHong Zhang ierr = MatSetBlockSizes(*outmat,bs,cbs);CHKERRQ(ierr); 39728761c3d6SHong Zhang ierr = MatSetType(*outmat,MATBAIJ);CHKERRQ(ierr); 39738761c3d6SHong Zhang ierr = MatSeqBAIJSetPreallocation(*outmat,bs,0,dnz);CHKERRQ(ierr); 3974e561ad89SHong Zhang ierr = MatMPIBAIJSetPreallocation(*outmat,bs,0,dnz,0,onz);CHKERRQ(ierr); 3975e561ad89SHong Zhang ierr = MatPreallocateFinalize(dnz,onz);CHKERRQ(ierr); 3976e561ad89SHong Zhang } 3977e561ad89SHong Zhang 3978bd153df0SHong Zhang /* numeric phase */ 3979647a6520SHong Zhang ierr = MatGetBlockSizes(inmat,&bs,&cbs);CHKERRQ(ierr); 3980bd153df0SHong Zhang ierr = MatGetOwnershipRange(*outmat,&rstart,NULL);CHKERRQ(ierr); 3981e561ad89SHong Zhang 3982e561ad89SHong Zhang for (i=0; i<m; i++) { 3983e561ad89SHong Zhang ierr = MatGetRow_SeqBAIJ(inmat,i,&nnz,&indx,&values);CHKERRQ(ierr); 3984e561ad89SHong Zhang Ii = i + rstart; 3985bd153df0SHong Zhang ierr = MatSetValues(*outmat,1,&Ii,nnz,indx,values,INSERT_VALUES);CHKERRQ(ierr); 3986e561ad89SHong Zhang ierr = MatRestoreRow_SeqBAIJ(inmat,i,&nnz,&indx,&values);CHKERRQ(ierr); 3987e561ad89SHong Zhang } 3988bd153df0SHong Zhang ierr = MatAssemblyBegin(*outmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 3989bd153df0SHong Zhang ierr = MatAssemblyEnd(*outmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 3990e561ad89SHong Zhang PetscFunctionReturn(0); 3991e561ad89SHong Zhang } 3992