1be1d678aSKris Buschelman #define PETSCMAT_DLL 279bdfe76SSatish Balay 37c4f633dSBarry Smith #include "../src/mat/impls/baij/mpi/mpibaij.h" /*I "petscmat.h" I*/ 479bdfe76SSatish Balay 5dfbe8321SBarry Smith EXTERN PetscErrorCode MatSetUpMultiply_MPIBAIJ(Mat); 6dfbe8321SBarry Smith EXTERN PetscErrorCode DisAssemble_MPIBAIJ(Mat); 7b24ad042SBarry Smith EXTERN PetscErrorCode MatIncreaseOverlap_MPIBAIJ(Mat,PetscInt,IS[],PetscInt); 8b24ad042SBarry Smith EXTERN PetscErrorCode MatGetSubMatrices_MPIBAIJ(Mat,PetscInt,const IS[],const IS[],MatReuse,Mat *[]); 9b24ad042SBarry Smith EXTERN PetscErrorCode MatGetValues_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt [],PetscScalar []); 10b24ad042SBarry Smith EXTERN PetscErrorCode MatSetValues_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt [],const PetscScalar [],InsertMode); 11b24ad042SBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode); 12b24ad042SBarry Smith EXTERN PetscErrorCode MatGetRow_SeqBAIJ(Mat,PetscInt,PetscInt*,PetscInt*[],PetscScalar*[]); 13b24ad042SBarry Smith EXTERN PetscErrorCode MatRestoreRow_SeqBAIJ(Mat,PetscInt,PetscInt*,PetscInt*[],PetscScalar*[]); 14f4df32b1SMatthew Knepley EXTERN PetscErrorCode MatZeroRows_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscScalar); 1593fea6afSBarry Smith 164a2ae208SSatish Balay #undef __FUNCT__ 17985db425SBarry Smith #define __FUNCT__ "MatGetRowMaxAbs_MPIBAIJ" 18985db425SBarry Smith PetscErrorCode MatGetRowMaxAbs_MPIBAIJ(Mat A,Vec v,PetscInt idx[]) 197843d17aSBarry Smith { 207843d17aSBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 21dfbe8321SBarry Smith PetscErrorCode ierr; 22985db425SBarry Smith PetscInt i,*idxb = 0; 2387828ca2SBarry Smith PetscScalar *va,*vb; 247843d17aSBarry Smith Vec vtmp; 257843d17aSBarry Smith 267843d17aSBarry Smith PetscFunctionBegin; 27985db425SBarry Smith ierr = MatGetRowMaxAbs(a->A,v,idx);CHKERRQ(ierr); 281ebc52fbSHong Zhang ierr = VecGetArray(v,&va);CHKERRQ(ierr); 29985db425SBarry Smith if (idx) { 30192daf7cSBarry Smith for (i=0; i<A->rmap->n; i++) {if (PetscAbsScalar(va[i])) idx[i] += A->cmap->rstart;} 31985db425SBarry Smith } 327843d17aSBarry Smith 33d0f46423SBarry Smith ierr = VecCreateSeq(PETSC_COMM_SELF,A->rmap->n,&vtmp);CHKERRQ(ierr); 34d0f46423SBarry Smith if (idx) {ierr = PetscMalloc(A->rmap->n*sizeof(PetscInt),&idxb);CHKERRQ(ierr);} 35985db425SBarry Smith ierr = MatGetRowMaxAbs(a->B,vtmp,idxb);CHKERRQ(ierr); 361ebc52fbSHong Zhang ierr = VecGetArray(vtmp,&vb);CHKERRQ(ierr); 377843d17aSBarry Smith 38d0f46423SBarry Smith for (i=0; i<A->rmap->n; i++){ 39d0f46423SBarry Smith if (PetscAbsScalar(va[i]) < PetscAbsScalar(vb[i])) {va[i] = vb[i]; if (idx) idx[i] = A->cmap->bs*a->garray[idxb[i]/A->cmap->bs] + (idxb[i] % A->cmap->bs);} 407843d17aSBarry Smith } 417843d17aSBarry Smith 421ebc52fbSHong Zhang ierr = VecRestoreArray(v,&va);CHKERRQ(ierr); 431ebc52fbSHong Zhang ierr = VecRestoreArray(vtmp,&vb);CHKERRQ(ierr); 44985db425SBarry Smith if (idxb) {ierr = PetscFree(idxb);CHKERRQ(ierr);} 45ac355199SBarry Smith ierr = VecDestroy(vtmp);CHKERRQ(ierr); 467843d17aSBarry Smith PetscFunctionReturn(0); 477843d17aSBarry Smith } 487843d17aSBarry Smith 497fc3c18eSBarry Smith EXTERN_C_BEGIN 504a2ae208SSatish Balay #undef __FUNCT__ 514a2ae208SSatish Balay #define __FUNCT__ "MatStoreValues_MPIBAIJ" 52be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatStoreValues_MPIBAIJ(Mat mat) 537fc3c18eSBarry Smith { 547fc3c18eSBarry Smith Mat_MPIBAIJ *aij = (Mat_MPIBAIJ *)mat->data; 55dfbe8321SBarry Smith PetscErrorCode ierr; 567fc3c18eSBarry Smith 577fc3c18eSBarry Smith PetscFunctionBegin; 587fc3c18eSBarry Smith ierr = MatStoreValues(aij->A);CHKERRQ(ierr); 597fc3c18eSBarry Smith ierr = MatStoreValues(aij->B);CHKERRQ(ierr); 607fc3c18eSBarry Smith PetscFunctionReturn(0); 617fc3c18eSBarry Smith } 627fc3c18eSBarry Smith EXTERN_C_END 637fc3c18eSBarry Smith 647fc3c18eSBarry Smith EXTERN_C_BEGIN 654a2ae208SSatish Balay #undef __FUNCT__ 664a2ae208SSatish Balay #define __FUNCT__ "MatRetrieveValues_MPIBAIJ" 67be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatRetrieveValues_MPIBAIJ(Mat mat) 687fc3c18eSBarry Smith { 697fc3c18eSBarry Smith Mat_MPIBAIJ *aij = (Mat_MPIBAIJ *)mat->data; 70dfbe8321SBarry Smith PetscErrorCode ierr; 717fc3c18eSBarry Smith 727fc3c18eSBarry Smith PetscFunctionBegin; 737fc3c18eSBarry Smith ierr = MatRetrieveValues(aij->A);CHKERRQ(ierr); 747fc3c18eSBarry Smith ierr = MatRetrieveValues(aij->B);CHKERRQ(ierr); 757fc3c18eSBarry Smith PetscFunctionReturn(0); 767fc3c18eSBarry Smith } 777fc3c18eSBarry Smith EXTERN_C_END 787fc3c18eSBarry Smith 79537820f0SBarry Smith /* 80537820f0SBarry Smith Local utility routine that creates a mapping from the global column 8157b952d6SSatish Balay number to the local number in the off-diagonal part of the local 8257b952d6SSatish Balay storage of the matrix. This is done in a non scable way since the 8357b952d6SSatish Balay length of colmap equals the global matrix length. 8457b952d6SSatish Balay */ 854a2ae208SSatish Balay #undef __FUNCT__ 864a2ae208SSatish Balay #define __FUNCT__ "CreateColmap_MPIBAIJ_Private" 87dfbe8321SBarry Smith PetscErrorCode CreateColmap_MPIBAIJ_Private(Mat mat) 8857b952d6SSatish Balay { 8957b952d6SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 9057b952d6SSatish Balay Mat_SeqBAIJ *B = (Mat_SeqBAIJ*)baij->B->data; 916849ba73SBarry Smith PetscErrorCode ierr; 92d0f46423SBarry Smith PetscInt nbs = B->nbs,i,bs=mat->rmap->bs; 9357b952d6SSatish Balay 94d64ed03dSBarry Smith PetscFunctionBegin; 95aa482453SBarry Smith #if defined (PETSC_USE_CTABLE) 96f14a1c24SBarry Smith ierr = PetscTableCreate(baij->nbs,&baij->colmap);CHKERRQ(ierr); 9748e59246SSatish Balay for (i=0; i<nbs; i++){ 980f5bd95cSBarry Smith ierr = PetscTableAdd(baij->colmap,baij->garray[i]+1,i*bs+1);CHKERRQ(ierr); 9948e59246SSatish Balay } 10048e59246SSatish Balay #else 101b24ad042SBarry Smith ierr = PetscMalloc((baij->Nbs+1)*sizeof(PetscInt),&baij->colmap);CHKERRQ(ierr); 10252e6d16bSBarry Smith ierr = PetscLogObjectMemory(mat,baij->Nbs*sizeof(PetscInt));CHKERRQ(ierr); 103b24ad042SBarry Smith ierr = PetscMemzero(baij->colmap,baij->Nbs*sizeof(PetscInt));CHKERRQ(ierr); 104928fc39bSSatish Balay for (i=0; i<nbs; i++) baij->colmap[baij->garray[i]] = i*bs+1; 10548e59246SSatish Balay #endif 1063a40ed3dSBarry Smith PetscFunctionReturn(0); 10757b952d6SSatish Balay } 10857b952d6SSatish Balay 10980c1aa95SSatish Balay #define CHUNKSIZE 10 11080c1aa95SSatish Balay 111f5e9677aSSatish Balay #define MatSetValues_SeqBAIJ_A_Private(row,col,value,addv) \ 11280c1aa95SSatish Balay { \ 11380c1aa95SSatish Balay \ 11480c1aa95SSatish Balay brow = row/bs; \ 11580c1aa95SSatish Balay rp = aj + ai[brow]; ap = aa + bs2*ai[brow]; \ 116ac7a638eSSatish Balay rmax = aimax[brow]; nrow = ailen[brow]; \ 11780c1aa95SSatish Balay bcol = col/bs; \ 11880c1aa95SSatish Balay ridx = row % bs; cidx = col % bs; \ 119ab26458aSBarry Smith low = 0; high = nrow; \ 120ab26458aSBarry Smith while (high-low > 3) { \ 121ab26458aSBarry Smith t = (low+high)/2; \ 122ab26458aSBarry Smith if (rp[t] > bcol) high = t; \ 123ab26458aSBarry Smith else low = t; \ 124ab26458aSBarry Smith } \ 125ab26458aSBarry Smith for (_i=low; _i<high; _i++) { \ 12680c1aa95SSatish Balay if (rp[_i] > bcol) break; \ 12780c1aa95SSatish Balay if (rp[_i] == bcol) { \ 12880c1aa95SSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 129eada6651SSatish Balay if (addv == ADD_VALUES) *bap += value; \ 130eada6651SSatish Balay else *bap = value; \ 131ac7a638eSSatish Balay goto a_noinsert; \ 13280c1aa95SSatish Balay } \ 13380c1aa95SSatish Balay } \ 13489280ab3SLois Curfman McInnes if (a->nonew == 1) goto a_noinsert; \ 135085a36d4SBarry Smith if (a->nonew == -1) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \ 136421e10b8SBarry Smith MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,brow,bcol,rmax,aa,ai,aj,rp,ap,aimax,a->nonew,MatScalar); \ 13780c1aa95SSatish Balay N = nrow++ - 1; \ 13880c1aa95SSatish Balay /* shift up all the later entries in this row */ \ 13980c1aa95SSatish Balay for (ii=N; ii>=_i; ii--) { \ 14080c1aa95SSatish Balay rp[ii+1] = rp[ii]; \ 1413eda8832SBarry Smith ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 14280c1aa95SSatish Balay } \ 1433eda8832SBarry Smith if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr); } \ 14480c1aa95SSatish Balay rp[_i] = bcol; \ 14580c1aa95SSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 146ac7a638eSSatish Balay a_noinsert:; \ 14780c1aa95SSatish Balay ailen[brow] = nrow; \ 14880c1aa95SSatish Balay } 14957b952d6SSatish Balay 150ac7a638eSSatish Balay #define MatSetValues_SeqBAIJ_B_Private(row,col,value,addv) \ 151ac7a638eSSatish Balay { \ 152ac7a638eSSatish Balay brow = row/bs; \ 153ac7a638eSSatish Balay rp = bj + bi[brow]; ap = ba + bs2*bi[brow]; \ 154ac7a638eSSatish Balay rmax = bimax[brow]; nrow = bilen[brow]; \ 155ac7a638eSSatish Balay bcol = col/bs; \ 156ac7a638eSSatish Balay ridx = row % bs; cidx = col % bs; \ 157ac7a638eSSatish Balay low = 0; high = nrow; \ 158ac7a638eSSatish Balay while (high-low > 3) { \ 159ac7a638eSSatish Balay t = (low+high)/2; \ 160ac7a638eSSatish Balay if (rp[t] > bcol) high = t; \ 161ac7a638eSSatish Balay else low = t; \ 162ac7a638eSSatish Balay } \ 163ac7a638eSSatish Balay for (_i=low; _i<high; _i++) { \ 164ac7a638eSSatish Balay if (rp[_i] > bcol) break; \ 165ac7a638eSSatish Balay if (rp[_i] == bcol) { \ 166ac7a638eSSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 167ac7a638eSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 168ac7a638eSSatish Balay else *bap = value; \ 169ac7a638eSSatish Balay goto b_noinsert; \ 170ac7a638eSSatish Balay } \ 171ac7a638eSSatish Balay } \ 17289280ab3SLois Curfman McInnes if (b->nonew == 1) goto b_noinsert; \ 173085a36d4SBarry Smith if (b->nonew == -1) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \ 174421e10b8SBarry Smith MatSeqXAIJReallocateAIJ(B,b->mbs,bs2,nrow,brow,bcol,rmax,ba,bi,bj,rp,ap,bimax,b->nonew,MatScalar); \ 175085a36d4SBarry Smith CHKMEMQ;\ 176ac7a638eSSatish Balay N = nrow++ - 1; \ 177ac7a638eSSatish Balay /* shift up all the later entries in this row */ \ 178ac7a638eSSatish Balay for (ii=N; ii>=_i; ii--) { \ 179ac7a638eSSatish Balay rp[ii+1] = rp[ii]; \ 1803eda8832SBarry Smith ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 181ac7a638eSSatish Balay } \ 1823eda8832SBarry Smith if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr);} \ 183ac7a638eSSatish Balay rp[_i] = bcol; \ 184ac7a638eSSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 185ac7a638eSSatish Balay b_noinsert:; \ 186ac7a638eSSatish Balay bilen[brow] = nrow; \ 187ac7a638eSSatish Balay } 188ac7a638eSSatish Balay 1894a2ae208SSatish Balay #undef __FUNCT__ 1904a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_MPIBAIJ" 191b24ad042SBarry Smith PetscErrorCode MatSetValues_MPIBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv) 19257b952d6SSatish Balay { 19357b952d6SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 19493fea6afSBarry Smith MatScalar value; 195273d9f13SBarry Smith PetscTruth roworiented = baij->roworiented; 196dfbe8321SBarry Smith PetscErrorCode ierr; 197b24ad042SBarry Smith PetscInt i,j,row,col; 198d0f46423SBarry Smith PetscInt rstart_orig=mat->rmap->rstart; 199d0f46423SBarry Smith PetscInt rend_orig=mat->rmap->rend,cstart_orig=mat->cmap->rstart; 200d0f46423SBarry Smith PetscInt cend_orig=mat->cmap->rend,bs=mat->rmap->bs; 20157b952d6SSatish Balay 202eada6651SSatish Balay /* Some Variables required in the macro */ 20380c1aa95SSatish Balay Mat A = baij->A; 20480c1aa95SSatish Balay Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)(A)->data; 205b24ad042SBarry Smith PetscInt *aimax=a->imax,*ai=a->i,*ailen=a->ilen,*aj=a->j; 2063eda8832SBarry Smith MatScalar *aa=a->a; 207ac7a638eSSatish Balay 208ac7a638eSSatish Balay Mat B = baij->B; 209ac7a638eSSatish Balay Mat_SeqBAIJ *b = (Mat_SeqBAIJ*)(B)->data; 210b24ad042SBarry Smith PetscInt *bimax=b->imax,*bi=b->i,*bilen=b->ilen,*bj=b->j; 2113eda8832SBarry Smith MatScalar *ba=b->a; 212ac7a638eSSatish Balay 213b24ad042SBarry Smith PetscInt *rp,ii,nrow,_i,rmax,N,brow,bcol; 214b24ad042SBarry Smith PetscInt low,high,t,ridx,cidx,bs2=a->bs2; 2153eda8832SBarry Smith MatScalar *ap,*bap; 21680c1aa95SSatish Balay 217d64ed03dSBarry Smith PetscFunctionBegin; 21871fd2e92SBarry Smith if (v) PetscValidScalarPointer(v,6); 21957b952d6SSatish Balay for (i=0; i<m; i++) { 2205ef9f2a5SBarry Smith if (im[i] < 0) continue; 2212515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 222d0f46423SBarry Smith if (im[i] >= mat->rmap->N) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],mat->rmap->N-1); 223639f9d9dSBarry Smith #endif 22457b952d6SSatish Balay if (im[i] >= rstart_orig && im[i] < rend_orig) { 22557b952d6SSatish Balay row = im[i] - rstart_orig; 22657b952d6SSatish Balay for (j=0; j<n; j++) { 22757b952d6SSatish Balay if (in[j] >= cstart_orig && in[j] < cend_orig){ 22857b952d6SSatish Balay col = in[j] - cstart_orig; 22957b952d6SSatish Balay if (roworiented) value = v[i*n+j]; else value = v[i+j*m]; 230f5e9677aSSatish Balay MatSetValues_SeqBAIJ_A_Private(row,col,value,addv); 23180c1aa95SSatish Balay /* ierr = MatSetValues_SeqBAIJ(baij->A,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 23273959e64SBarry Smith } else if (in[j] < 0) continue; 2332515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 234d0f46423SBarry Smith else if (in[j] >= mat->cmap->N) {SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",in[i],mat->cmap->N-1);} 235639f9d9dSBarry Smith #endif 23657b952d6SSatish Balay else { 23757b952d6SSatish Balay if (mat->was_assembled) { 238905e6a2fSBarry Smith if (!baij->colmap) { 239905e6a2fSBarry Smith ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 240905e6a2fSBarry Smith } 241aa482453SBarry Smith #if defined (PETSC_USE_CTABLE) 2420f5bd95cSBarry Smith ierr = PetscTableFind(baij->colmap,in[j]/bs + 1,&col);CHKERRQ(ierr); 243bba1ac68SSatish Balay col = col - 1; 24448e59246SSatish Balay #else 245bba1ac68SSatish Balay col = baij->colmap[in[j]/bs] - 1; 24648e59246SSatish Balay #endif 24757b952d6SSatish Balay if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) { 24857b952d6SSatish Balay ierr = DisAssemble_MPIBAIJ(mat);CHKERRQ(ierr); 2498295de27SSatish Balay col = in[j]; 2509bf004c3SSatish Balay /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */ 2519bf004c3SSatish Balay B = baij->B; 2529bf004c3SSatish Balay b = (Mat_SeqBAIJ*)(B)->data; 2539bf004c3SSatish Balay bimax=b->imax;bi=b->i;bilen=b->ilen;bj=b->j; 2549bf004c3SSatish Balay ba=b->a; 255bba1ac68SSatish Balay } else col += in[j]%bs; 2568295de27SSatish Balay } else col = in[j]; 25757b952d6SSatish Balay if (roworiented) value = v[i*n+j]; else value = v[i+j*m]; 25890da58bdSSatish Balay MatSetValues_SeqBAIJ_B_Private(row,col,value,addv); 25990da58bdSSatish Balay /* ierr = MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 26057b952d6SSatish Balay } 26157b952d6SSatish Balay } 262d64ed03dSBarry Smith } else { 26390f02eecSBarry Smith if (!baij->donotstash) { 264ff2fd236SBarry Smith if (roworiented) { 265b400d20cSBarry Smith ierr = MatStashValuesRow_Private(&mat->stash,im[i],n,in,v+i*n,PETSC_FALSE);CHKERRQ(ierr); 266ff2fd236SBarry Smith } else { 267b400d20cSBarry Smith ierr = MatStashValuesCol_Private(&mat->stash,im[i],n,in,v+i,m,PETSC_FALSE);CHKERRQ(ierr); 26857b952d6SSatish Balay } 26957b952d6SSatish Balay } 27057b952d6SSatish Balay } 27190f02eecSBarry Smith } 2723a40ed3dSBarry Smith PetscFunctionReturn(0); 27357b952d6SSatish Balay } 27457b952d6SSatish Balay 2754a2ae208SSatish Balay #undef __FUNCT__ 27697e5c40aSBarry Smith #define __FUNCT__ "MatSetValuesBlocked_MPIBAIJ" 27797e5c40aSBarry Smith PetscErrorCode MatSetValuesBlocked_MPIBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv) 278ab26458aSBarry Smith { 279ab26458aSBarry Smith Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 280dd6ea824SBarry Smith const PetscScalar *value; 281f15d580aSBarry Smith MatScalar *barray=baij->barray; 282273d9f13SBarry Smith PetscTruth roworiented = baij->roworiented; 283dfbe8321SBarry Smith PetscErrorCode ierr; 284899cda47SBarry Smith PetscInt i,j,ii,jj,row,col,rstart=baij->rstartbs; 285899cda47SBarry Smith PetscInt rend=baij->rendbs,cstart=baij->cstartbs,stepval; 286d0f46423SBarry Smith PetscInt cend=baij->cendbs,bs=mat->rmap->bs,bs2=baij->bs2; 287ab26458aSBarry Smith 288b16ae2b1SBarry Smith PetscFunctionBegin; 28930793edcSSatish Balay if(!barray) { 29082502324SSatish Balay ierr = PetscMalloc(bs2*sizeof(MatScalar),&barray);CHKERRQ(ierr); 29182502324SSatish Balay baij->barray = barray; 29230793edcSSatish Balay } 29330793edcSSatish Balay 294ab26458aSBarry Smith if (roworiented) { 295ab26458aSBarry Smith stepval = (n-1)*bs; 296ab26458aSBarry Smith } else { 297ab26458aSBarry Smith stepval = (m-1)*bs; 298ab26458aSBarry Smith } 299ab26458aSBarry Smith for (i=0; i<m; i++) { 3005ef9f2a5SBarry Smith if (im[i] < 0) continue; 3012515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 30277431f27SBarry Smith if (im[i] >= baij->Mbs) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large, row %D max %D",im[i],baij->Mbs-1); 303ab26458aSBarry Smith #endif 304ab26458aSBarry Smith if (im[i] >= rstart && im[i] < rend) { 305ab26458aSBarry Smith row = im[i] - rstart; 306ab26458aSBarry Smith for (j=0; j<n; j++) { 30715b57d14SSatish Balay /* If NumCol = 1 then a copy is not required */ 30815b57d14SSatish Balay if ((roworiented) && (n == 1)) { 309f15d580aSBarry Smith barray = (MatScalar*)v + i*bs2; 31015b57d14SSatish Balay } else if((!roworiented) && (m == 1)) { 311f15d580aSBarry Smith barray = (MatScalar*)v + j*bs2; 31215b57d14SSatish Balay } else { /* Here a copy is required */ 313ab26458aSBarry Smith if (roworiented) { 314ab26458aSBarry Smith value = v + i*(stepval+bs)*bs + j*bs; 315ab26458aSBarry Smith } else { 316ab26458aSBarry Smith value = v + j*(stepval+bs)*bs + i*bs; 317abef11f7SSatish Balay } 31847513183SBarry Smith for (ii=0; ii<bs; ii++,value+=stepval) { 31947513183SBarry Smith for (jj=0; jj<bs; jj++) { 32030793edcSSatish Balay *barray++ = *value++; 32147513183SBarry Smith } 32247513183SBarry Smith } 32330793edcSSatish Balay barray -=bs2; 32415b57d14SSatish Balay } 325abef11f7SSatish Balay 326abef11f7SSatish Balay if (in[j] >= cstart && in[j] < cend){ 327abef11f7SSatish Balay col = in[j] - cstart; 32897e5c40aSBarry Smith ierr = MatSetValuesBlocked_SeqBAIJ(baij->A,1,&row,1,&col,barray,addv);CHKERRQ(ierr); 329ab26458aSBarry Smith } 3305ef9f2a5SBarry Smith else if (in[j] < 0) continue; 3312515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 33277431f27SBarry Smith else if (in[j] >= baij->Nbs) {SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large, col %D max %D",in[j],baij->Nbs-1);} 333ab26458aSBarry Smith #endif 334ab26458aSBarry Smith else { 335ab26458aSBarry Smith if (mat->was_assembled) { 336ab26458aSBarry Smith if (!baij->colmap) { 337ab26458aSBarry Smith ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 338ab26458aSBarry Smith } 339a5eb4965SSatish Balay 3402515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 341aa482453SBarry Smith #if defined (PETSC_USE_CTABLE) 342b24ad042SBarry Smith { PetscInt data; 3430f5bd95cSBarry Smith ierr = PetscTableFind(baij->colmap,in[j]+1,&data);CHKERRQ(ierr); 34429bbc08cSBarry Smith if ((data - 1) % bs) SETERRQ(PETSC_ERR_PLIB,"Incorrect colmap"); 345fa46199cSSatish Balay } 34648e59246SSatish Balay #else 34729bbc08cSBarry Smith if ((baij->colmap[in[j]] - 1) % bs) SETERRQ(PETSC_ERR_PLIB,"Incorrect colmap"); 348a5eb4965SSatish Balay #endif 34948e59246SSatish Balay #endif 350aa482453SBarry Smith #if defined (PETSC_USE_CTABLE) 3510f5bd95cSBarry Smith ierr = PetscTableFind(baij->colmap,in[j]+1,&col);CHKERRQ(ierr); 352fa46199cSSatish Balay col = (col - 1)/bs; 35348e59246SSatish Balay #else 354a5eb4965SSatish Balay col = (baij->colmap[in[j]] - 1)/bs; 35548e59246SSatish Balay #endif 356ab26458aSBarry Smith if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) { 357ab26458aSBarry Smith ierr = DisAssemble_MPIBAIJ(mat);CHKERRQ(ierr); 358ab26458aSBarry Smith col = in[j]; 359ab26458aSBarry Smith } 360ab26458aSBarry Smith } 361ab26458aSBarry Smith else col = in[j]; 36297e5c40aSBarry Smith ierr = MatSetValuesBlocked_SeqBAIJ(baij->B,1,&row,1,&col,barray,addv);CHKERRQ(ierr); 363ab26458aSBarry Smith } 364ab26458aSBarry Smith } 365d64ed03dSBarry Smith } else { 366ab26458aSBarry Smith if (!baij->donotstash) { 367ff2fd236SBarry Smith if (roworiented) { 3686fa18ffdSBarry Smith ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 369ff2fd236SBarry Smith } else { 3706fa18ffdSBarry Smith ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 371ff2fd236SBarry Smith } 372abef11f7SSatish Balay } 373ab26458aSBarry Smith } 374ab26458aSBarry Smith } 3753a40ed3dSBarry Smith PetscFunctionReturn(0); 376ab26458aSBarry Smith } 3776fa18ffdSBarry Smith 3780bdbc534SSatish Balay #define HASH_KEY 0.6180339887 379b24ad042SBarry Smith #define HASH(size,key,tmp) (tmp = (key)*HASH_KEY,(PetscInt)((size)*(tmp-(PetscInt)tmp))) 380b24ad042SBarry Smith /* #define HASH(size,key) ((PetscInt)((size)*fmod(((key)*HASH_KEY),1))) */ 381b24ad042SBarry Smith /* #define HASH(size,key,tmp) ((PetscInt)((size)*fmod(((key)*HASH_KEY),1))) */ 3824a2ae208SSatish Balay #undef __FUNCT__ 38397e5c40aSBarry Smith #define __FUNCT__ "MatSetValues_MPIBAIJ_HT" 38497e5c40aSBarry Smith PetscErrorCode MatSetValues_MPIBAIJ_HT(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv) 3850bdbc534SSatish Balay { 3860bdbc534SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 387273d9f13SBarry Smith PetscTruth roworiented = baij->roworiented; 388dfbe8321SBarry Smith PetscErrorCode ierr; 389b24ad042SBarry Smith PetscInt i,j,row,col; 390d0f46423SBarry Smith PetscInt rstart_orig=mat->rmap->rstart; 391d0f46423SBarry Smith PetscInt rend_orig=mat->rmap->rend,Nbs=baij->Nbs; 392d0f46423SBarry Smith PetscInt h1,key,size=baij->ht_size,bs=mat->rmap->bs,*HT=baij->ht,idx; 393329f5518SBarry Smith PetscReal tmp; 3943eda8832SBarry Smith MatScalar **HD = baij->hd,value; 3952515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 396b24ad042SBarry Smith PetscInt total_ct=baij->ht_total_ct,insert_ct=baij->ht_insert_ct; 3974a15367fSSatish Balay #endif 3980bdbc534SSatish Balay 3990bdbc534SSatish Balay PetscFunctionBegin; 40071fd2e92SBarry Smith if (v) PetscValidScalarPointer(v,6); 4010bdbc534SSatish Balay for (i=0; i<m; i++) { 4022515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 40329bbc08cSBarry Smith if (im[i] < 0) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Negative row"); 404d0f46423SBarry Smith if (im[i] >= mat->rmap->N) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],mat->rmap->N-1); 4050bdbc534SSatish Balay #endif 4060bdbc534SSatish Balay row = im[i]; 407c2760754SSatish Balay if (row >= rstart_orig && row < rend_orig) { 4080bdbc534SSatish Balay for (j=0; j<n; j++) { 4090bdbc534SSatish Balay col = in[j]; 4106fa18ffdSBarry Smith if (roworiented) value = v[i*n+j]; else value = v[i+j*m]; 411b24ad042SBarry Smith /* Look up PetscInto the Hash Table */ 412c2760754SSatish Balay key = (row/bs)*Nbs+(col/bs)+1; 413c2760754SSatish Balay h1 = HASH(size,key,tmp); 4140bdbc534SSatish Balay 415c2760754SSatish Balay 416c2760754SSatish Balay idx = h1; 4172515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 418187ce0cbSSatish Balay insert_ct++; 419187ce0cbSSatish Balay total_ct++; 420187ce0cbSSatish Balay if (HT[idx] != key) { 421187ce0cbSSatish Balay for (idx=h1; (idx<size) && (HT[idx]!=key); idx++,total_ct++); 422187ce0cbSSatish Balay if (idx == size) { 423187ce0cbSSatish Balay for (idx=0; (idx<h1) && (HT[idx]!=key); idx++,total_ct++); 424187ce0cbSSatish Balay if (idx == h1) { 42577431f27SBarry Smith SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"(%D,%D) has no entry in the hash table", row, col); 426187ce0cbSSatish Balay } 427187ce0cbSSatish Balay } 428187ce0cbSSatish Balay } 429187ce0cbSSatish Balay #else 430c2760754SSatish Balay if (HT[idx] != key) { 431c2760754SSatish Balay for (idx=h1; (idx<size) && (HT[idx]!=key); idx++); 432c2760754SSatish Balay if (idx == size) { 433c2760754SSatish Balay for (idx=0; (idx<h1) && (HT[idx]!=key); idx++); 434c2760754SSatish Balay if (idx == h1) { 43577431f27SBarry Smith SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"(%D,%D) has no entry in the hash table", row, col); 436c2760754SSatish Balay } 437c2760754SSatish Balay } 438c2760754SSatish Balay } 439187ce0cbSSatish Balay #endif 440c2760754SSatish Balay /* A HASH table entry is found, so insert the values at the correct address */ 441c2760754SSatish Balay if (addv == ADD_VALUES) *(HD[idx]+ (col % bs)*bs + (row % bs)) += value; 442c2760754SSatish Balay else *(HD[idx]+ (col % bs)*bs + (row % bs)) = value; 4430bdbc534SSatish Balay } 4440bdbc534SSatish Balay } else { 4450bdbc534SSatish Balay if (!baij->donotstash) { 446ff2fd236SBarry Smith if (roworiented) { 447b400d20cSBarry Smith ierr = MatStashValuesRow_Private(&mat->stash,im[i],n,in,v+i*n,PETSC_FALSE);CHKERRQ(ierr); 448ff2fd236SBarry Smith } else { 449b400d20cSBarry Smith ierr = MatStashValuesCol_Private(&mat->stash,im[i],n,in,v+i,m,PETSC_FALSE);CHKERRQ(ierr); 4500bdbc534SSatish Balay } 4510bdbc534SSatish Balay } 4520bdbc534SSatish Balay } 4530bdbc534SSatish Balay } 4542515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 455187ce0cbSSatish Balay baij->ht_total_ct = total_ct; 456187ce0cbSSatish Balay baij->ht_insert_ct = insert_ct; 457187ce0cbSSatish Balay #endif 4580bdbc534SSatish Balay PetscFunctionReturn(0); 4590bdbc534SSatish Balay } 4600bdbc534SSatish Balay 4614a2ae208SSatish Balay #undef __FUNCT__ 46297e5c40aSBarry Smith #define __FUNCT__ "MatSetValuesBlocked_MPIBAIJ_HT" 46397e5c40aSBarry Smith PetscErrorCode MatSetValuesBlocked_MPIBAIJ_HT(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv) 4640bdbc534SSatish Balay { 4650bdbc534SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 466273d9f13SBarry Smith PetscTruth roworiented = baij->roworiented; 467dfbe8321SBarry Smith PetscErrorCode ierr; 468b24ad042SBarry Smith PetscInt i,j,ii,jj,row,col; 469899cda47SBarry Smith PetscInt rstart=baij->rstartbs; 470d0f46423SBarry Smith PetscInt rend=mat->rmap->rend,stepval,bs=mat->rmap->bs,bs2=baij->bs2,nbs2=n*bs2; 471b24ad042SBarry Smith PetscInt h1,key,size=baij->ht_size,idx,*HT=baij->ht,Nbs=baij->Nbs; 472329f5518SBarry Smith PetscReal tmp; 4733eda8832SBarry Smith MatScalar **HD = baij->hd,*baij_a; 474dd6ea824SBarry Smith const PetscScalar *v_t,*value; 4752515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 476b24ad042SBarry Smith PetscInt total_ct=baij->ht_total_ct,insert_ct=baij->ht_insert_ct; 4774a15367fSSatish Balay #endif 4780bdbc534SSatish Balay 479d0a41580SSatish Balay PetscFunctionBegin; 480d0a41580SSatish Balay 4810bdbc534SSatish Balay if (roworiented) { 4820bdbc534SSatish Balay stepval = (n-1)*bs; 4830bdbc534SSatish Balay } else { 4840bdbc534SSatish Balay stepval = (m-1)*bs; 4850bdbc534SSatish Balay } 4860bdbc534SSatish Balay for (i=0; i<m; i++) { 4872515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 48877431f27SBarry Smith if (im[i] < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %D",im[i]); 48977431f27SBarry Smith if (im[i] >= baij->Mbs) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],baij->Mbs-1); 4900bdbc534SSatish Balay #endif 4910bdbc534SSatish Balay row = im[i]; 492ab715e2cSSatish Balay v_t = v + i*nbs2; 493c2760754SSatish Balay if (row >= rstart && row < rend) { 4940bdbc534SSatish Balay for (j=0; j<n; j++) { 4950bdbc534SSatish Balay col = in[j]; 4960bdbc534SSatish Balay 4970bdbc534SSatish Balay /* Look up into the Hash Table */ 498c2760754SSatish Balay key = row*Nbs+col+1; 499c2760754SSatish Balay h1 = HASH(size,key,tmp); 5000bdbc534SSatish Balay 501c2760754SSatish Balay idx = h1; 5022515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 503187ce0cbSSatish Balay total_ct++; 504187ce0cbSSatish Balay insert_ct++; 505187ce0cbSSatish Balay if (HT[idx] != key) { 506187ce0cbSSatish Balay for (idx=h1; (idx<size) && (HT[idx]!=key); idx++,total_ct++); 507187ce0cbSSatish Balay if (idx == size) { 508187ce0cbSSatish Balay for (idx=0; (idx<h1) && (HT[idx]!=key); idx++,total_ct++); 509187ce0cbSSatish Balay if (idx == h1) { 51077431f27SBarry Smith SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"(%D,%D) has no entry in the hash table", row, col); 511187ce0cbSSatish Balay } 512187ce0cbSSatish Balay } 513187ce0cbSSatish Balay } 514187ce0cbSSatish Balay #else 515c2760754SSatish Balay if (HT[idx] != key) { 516c2760754SSatish Balay for (idx=h1; (idx<size) && (HT[idx]!=key); idx++); 517c2760754SSatish Balay if (idx == size) { 518c2760754SSatish Balay for (idx=0; (idx<h1) && (HT[idx]!=key); idx++); 519c2760754SSatish Balay if (idx == h1) { 52077431f27SBarry Smith SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"(%D,%D) has no entry in the hash table", row, col); 521c2760754SSatish Balay } 522c2760754SSatish Balay } 523c2760754SSatish Balay } 524187ce0cbSSatish Balay #endif 525c2760754SSatish Balay baij_a = HD[idx]; 5260bdbc534SSatish Balay if (roworiented) { 527c2760754SSatish Balay /*value = v + i*(stepval+bs)*bs + j*bs;*/ 528187ce0cbSSatish Balay /* value = v + (i*(stepval+bs)+j)*bs; */ 529187ce0cbSSatish Balay value = v_t; 530187ce0cbSSatish Balay v_t += bs; 531fef45726SSatish Balay if (addv == ADD_VALUES) { 532c2760754SSatish Balay for (ii=0; ii<bs; ii++,value+=stepval) { 533c2760754SSatish Balay for (jj=ii; jj<bs2; jj+=bs) { 534fef45726SSatish Balay baij_a[jj] += *value++; 535b4cc0f5aSSatish Balay } 536b4cc0f5aSSatish Balay } 537fef45726SSatish Balay } else { 538c2760754SSatish Balay for (ii=0; ii<bs; ii++,value+=stepval) { 539c2760754SSatish Balay for (jj=ii; jj<bs2; jj+=bs) { 540fef45726SSatish Balay baij_a[jj] = *value++; 541fef45726SSatish Balay } 542fef45726SSatish Balay } 543fef45726SSatish Balay } 5440bdbc534SSatish Balay } else { 5450bdbc534SSatish Balay value = v + j*(stepval+bs)*bs + i*bs; 546fef45726SSatish Balay if (addv == ADD_VALUES) { 547b4cc0f5aSSatish Balay for (ii=0; ii<bs; ii++,value+=stepval,baij_a+=bs) { 5480bdbc534SSatish Balay for (jj=0; jj<bs; jj++) { 549fef45726SSatish Balay baij_a[jj] += *value++; 550fef45726SSatish Balay } 551fef45726SSatish Balay } 552fef45726SSatish Balay } else { 553fef45726SSatish Balay for (ii=0; ii<bs; ii++,value+=stepval,baij_a+=bs) { 554fef45726SSatish Balay for (jj=0; jj<bs; jj++) { 555fef45726SSatish Balay baij_a[jj] = *value++; 556fef45726SSatish Balay } 557b4cc0f5aSSatish Balay } 5580bdbc534SSatish Balay } 5590bdbc534SSatish Balay } 5600bdbc534SSatish Balay } 5610bdbc534SSatish Balay } else { 5620bdbc534SSatish Balay if (!baij->donotstash) { 5630bdbc534SSatish Balay if (roworiented) { 5648798bf22SSatish Balay ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 5650bdbc534SSatish Balay } else { 5668798bf22SSatish Balay ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 5670bdbc534SSatish Balay } 5680bdbc534SSatish Balay } 5690bdbc534SSatish Balay } 5700bdbc534SSatish Balay } 5712515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 572187ce0cbSSatish Balay baij->ht_total_ct = total_ct; 573187ce0cbSSatish Balay baij->ht_insert_ct = insert_ct; 574187ce0cbSSatish Balay #endif 5750bdbc534SSatish Balay PetscFunctionReturn(0); 5760bdbc534SSatish Balay } 577133cdb44SSatish Balay 5784a2ae208SSatish Balay #undef __FUNCT__ 5794a2ae208SSatish Balay #define __FUNCT__ "MatGetValues_MPIBAIJ" 580b24ad042SBarry Smith PetscErrorCode MatGetValues_MPIBAIJ(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[]) 581d6de1c52SSatish Balay { 582d6de1c52SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 5836849ba73SBarry Smith PetscErrorCode ierr; 584d0f46423SBarry Smith PetscInt bs=mat->rmap->bs,i,j,bsrstart = mat->rmap->rstart,bsrend = mat->rmap->rend; 585d0f46423SBarry Smith PetscInt bscstart = mat->cmap->rstart,bscend = mat->cmap->rend,row,col,data; 586d6de1c52SSatish Balay 587133cdb44SSatish Balay PetscFunctionBegin; 588d6de1c52SSatish Balay for (i=0; i<m; i++) { 58997e567efSBarry Smith if (idxm[i] < 0) continue; /* SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %D",idxm[i]);*/ 590d0f46423SBarry Smith if (idxm[i] >= mat->rmap->N) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",idxm[i],mat->rmap->N-1); 591d6de1c52SSatish Balay if (idxm[i] >= bsrstart && idxm[i] < bsrend) { 592d6de1c52SSatish Balay row = idxm[i] - bsrstart; 593d6de1c52SSatish Balay for (j=0; j<n; j++) { 59497e567efSBarry Smith if (idxn[j] < 0) continue; /* SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Negative column: %D",idxn[j]); */ 595d0f46423SBarry Smith if (idxn[j] >= mat->cmap->N) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",idxn[j],mat->cmap->N-1); 596d6de1c52SSatish Balay if (idxn[j] >= bscstart && idxn[j] < bscend){ 597d6de1c52SSatish Balay col = idxn[j] - bscstart; 59898dd23e9SBarry Smith ierr = MatGetValues_SeqBAIJ(baij->A,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr); 599d64ed03dSBarry Smith } else { 600905e6a2fSBarry Smith if (!baij->colmap) { 601905e6a2fSBarry Smith ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 602905e6a2fSBarry Smith } 603aa482453SBarry Smith #if defined (PETSC_USE_CTABLE) 6040f5bd95cSBarry Smith ierr = PetscTableFind(baij->colmap,idxn[j]/bs+1,&data);CHKERRQ(ierr); 605fa46199cSSatish Balay data --; 60648e59246SSatish Balay #else 60748e59246SSatish Balay data = baij->colmap[idxn[j]/bs]-1; 60848e59246SSatish Balay #endif 60948e59246SSatish Balay if((data < 0) || (baij->garray[data/bs] != idxn[j]/bs)) *(v+i*n+j) = 0.0; 610d9d09a02SSatish Balay else { 61148e59246SSatish Balay col = data + idxn[j]%bs; 61298dd23e9SBarry Smith ierr = MatGetValues_SeqBAIJ(baij->B,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr); 613d6de1c52SSatish Balay } 614d6de1c52SSatish Balay } 615d6de1c52SSatish Balay } 616d64ed03dSBarry Smith } else { 61729bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"Only local values currently supported"); 618d6de1c52SSatish Balay } 619d6de1c52SSatish Balay } 6203a40ed3dSBarry Smith PetscFunctionReturn(0); 621d6de1c52SSatish Balay } 622d6de1c52SSatish Balay 6234a2ae208SSatish Balay #undef __FUNCT__ 6244a2ae208SSatish Balay #define __FUNCT__ "MatNorm_MPIBAIJ" 625dfbe8321SBarry Smith PetscErrorCode MatNorm_MPIBAIJ(Mat mat,NormType type,PetscReal *nrm) 626d6de1c52SSatish Balay { 627d6de1c52SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 628d6de1c52SSatish Balay Mat_SeqBAIJ *amat = (Mat_SeqBAIJ*)baij->A->data,*bmat = (Mat_SeqBAIJ*)baij->B->data; 629dfbe8321SBarry Smith PetscErrorCode ierr; 630d0f46423SBarry Smith PetscInt i,j,bs2=baij->bs2,bs=baij->A->rmap->bs,nz,row,col; 631329f5518SBarry Smith PetscReal sum = 0.0; 6323eda8832SBarry Smith MatScalar *v; 633d6de1c52SSatish Balay 634d64ed03dSBarry Smith PetscFunctionBegin; 635d6de1c52SSatish Balay if (baij->size == 1) { 636064f8208SBarry Smith ierr = MatNorm(baij->A,type,nrm);CHKERRQ(ierr); 637d6de1c52SSatish Balay } else { 638d6de1c52SSatish Balay if (type == NORM_FROBENIUS) { 639d6de1c52SSatish Balay v = amat->a; 6408a62d963SHong Zhang nz = amat->nz*bs2; 6418a62d963SHong Zhang for (i=0; i<nz; i++) { 642aa482453SBarry Smith #if defined(PETSC_USE_COMPLEX) 643329f5518SBarry Smith sum += PetscRealPart(PetscConj(*v)*(*v)); v++; 644d6de1c52SSatish Balay #else 645d6de1c52SSatish Balay sum += (*v)*(*v); v++; 646d6de1c52SSatish Balay #endif 647d6de1c52SSatish Balay } 648d6de1c52SSatish Balay v = bmat->a; 6498a62d963SHong Zhang nz = bmat->nz*bs2; 6508a62d963SHong Zhang for (i=0; i<nz; i++) { 651aa482453SBarry Smith #if defined(PETSC_USE_COMPLEX) 652329f5518SBarry Smith sum += PetscRealPart(PetscConj(*v)*(*v)); v++; 653d6de1c52SSatish Balay #else 654d6de1c52SSatish Balay sum += (*v)*(*v); v++; 655d6de1c52SSatish Balay #endif 656d6de1c52SSatish Balay } 6577adad957SLisandro Dalcin ierr = MPI_Allreduce(&sum,nrm,1,MPIU_REAL,MPI_SUM,((PetscObject)mat)->comm);CHKERRQ(ierr); 658064f8208SBarry Smith *nrm = sqrt(*nrm); 6598a62d963SHong Zhang } else if (type == NORM_1) { /* max column sum */ 6608a62d963SHong Zhang PetscReal *tmp,*tmp2; 661899cda47SBarry Smith PetscInt *jj,*garray=baij->garray,cstart=baij->rstartbs; 662d0f46423SBarry Smith ierr = PetscMalloc((2*mat->cmap->N+1)*sizeof(PetscReal),&tmp);CHKERRQ(ierr); 663d0f46423SBarry Smith tmp2 = tmp + mat->cmap->N; 664d0f46423SBarry Smith ierr = PetscMemzero(tmp,mat->cmap->N*sizeof(PetscReal));CHKERRQ(ierr); 6658a62d963SHong Zhang v = amat->a; jj = amat->j; 6668a62d963SHong Zhang for (i=0; i<amat->nz; i++) { 6678a62d963SHong Zhang for (j=0; j<bs; j++){ 6688a62d963SHong Zhang col = bs*(cstart + *jj) + j; /* column index */ 6698a62d963SHong Zhang for (row=0; row<bs; row++){ 6708a62d963SHong Zhang tmp[col] += PetscAbsScalar(*v); v++; 6718a62d963SHong Zhang } 6728a62d963SHong Zhang } 6738a62d963SHong Zhang jj++; 6748a62d963SHong Zhang } 6758a62d963SHong Zhang v = bmat->a; jj = bmat->j; 6768a62d963SHong Zhang for (i=0; i<bmat->nz; i++) { 6778a62d963SHong Zhang for (j=0; j<bs; j++){ 6788a62d963SHong Zhang col = bs*garray[*jj] + j; 6798a62d963SHong Zhang for (row=0; row<bs; row++){ 6808a62d963SHong Zhang tmp[col] += PetscAbsScalar(*v); v++; 6818a62d963SHong Zhang } 6828a62d963SHong Zhang } 6838a62d963SHong Zhang jj++; 6848a62d963SHong Zhang } 685d0f46423SBarry Smith ierr = MPI_Allreduce(tmp,tmp2,mat->cmap->N,MPIU_REAL,MPI_SUM,((PetscObject)mat)->comm);CHKERRQ(ierr); 6868a62d963SHong Zhang *nrm = 0.0; 687d0f46423SBarry Smith for (j=0; j<mat->cmap->N; j++) { 6888a62d963SHong Zhang if (tmp2[j] > *nrm) *nrm = tmp2[j]; 6898a62d963SHong Zhang } 6908a62d963SHong Zhang ierr = PetscFree(tmp);CHKERRQ(ierr); 6918a62d963SHong Zhang } else if (type == NORM_INFINITY) { /* max row sum */ 692577dd1f9SKris Buschelman PetscReal *sums; 693577dd1f9SKris Buschelman ierr = PetscMalloc(bs*sizeof(PetscReal),&sums);CHKERRQ(ierr) 6948a62d963SHong Zhang sum = 0.0; 6958a62d963SHong Zhang for (j=0; j<amat->mbs; j++) { 6968a62d963SHong Zhang for (row=0; row<bs; row++) sums[row] = 0.0; 6978a62d963SHong Zhang v = amat->a + bs2*amat->i[j]; 6988a62d963SHong Zhang nz = amat->i[j+1]-amat->i[j]; 6998a62d963SHong Zhang for (i=0; i<nz; i++) { 7008a62d963SHong Zhang for (col=0; col<bs; col++){ 7018a62d963SHong Zhang for (row=0; row<bs; row++){ 7028a62d963SHong Zhang sums[row] += PetscAbsScalar(*v); v++; 7038a62d963SHong Zhang } 7048a62d963SHong Zhang } 7058a62d963SHong Zhang } 7068a62d963SHong Zhang v = bmat->a + bs2*bmat->i[j]; 7078a62d963SHong Zhang nz = bmat->i[j+1]-bmat->i[j]; 7088a62d963SHong Zhang for (i=0; i<nz; i++) { 7098a62d963SHong Zhang for (col=0; col<bs; col++){ 7108a62d963SHong Zhang for (row=0; row<bs; row++){ 7118a62d963SHong Zhang sums[row] += PetscAbsScalar(*v); v++; 7128a62d963SHong Zhang } 7138a62d963SHong Zhang } 7148a62d963SHong Zhang } 7158a62d963SHong Zhang for (row=0; row<bs; row++){ 7168a62d963SHong Zhang if (sums[row] > sum) sum = sums[row]; 7178a62d963SHong Zhang } 7188a62d963SHong Zhang } 7197adad957SLisandro Dalcin ierr = MPI_Allreduce(&sum,nrm,1,MPIU_REAL,MPI_MAX,((PetscObject)mat)->comm);CHKERRQ(ierr); 720577dd1f9SKris Buschelman ierr = PetscFree(sums);CHKERRQ(ierr); 721d64ed03dSBarry Smith } else { 72229bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"No support for this norm yet"); 723d6de1c52SSatish Balay } 724d64ed03dSBarry Smith } 7253a40ed3dSBarry Smith PetscFunctionReturn(0); 726d6de1c52SSatish Balay } 72757b952d6SSatish Balay 728fef45726SSatish Balay /* 729fef45726SSatish Balay Creates the hash table, and sets the table 730fef45726SSatish Balay This table is created only once. 731fef45726SSatish Balay If new entried need to be added to the matrix 732fef45726SSatish Balay then the hash table has to be destroyed and 733fef45726SSatish Balay recreated. 734fef45726SSatish Balay */ 7354a2ae208SSatish Balay #undef __FUNCT__ 7364a2ae208SSatish Balay #define __FUNCT__ "MatCreateHashTable_MPIBAIJ_Private" 737dfbe8321SBarry Smith PetscErrorCode MatCreateHashTable_MPIBAIJ_Private(Mat mat,PetscReal factor) 738596b8d2eSBarry Smith { 739596b8d2eSBarry Smith Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 740596b8d2eSBarry Smith Mat A = baij->A,B=baij->B; 741596b8d2eSBarry Smith Mat_SeqBAIJ *a=(Mat_SeqBAIJ *)A->data,*b=(Mat_SeqBAIJ *)B->data; 742b24ad042SBarry Smith PetscInt i,j,k,nz=a->nz+b->nz,h1,*ai=a->i,*aj=a->j,*bi=b->i,*bj=b->j; 7436849ba73SBarry Smith PetscErrorCode ierr; 744899cda47SBarry Smith PetscInt size,bs2=baij->bs2,rstart=baij->rstartbs; 745899cda47SBarry Smith PetscInt cstart=baij->cstartbs,*garray=baij->garray,row,col,Nbs=baij->Nbs; 746b24ad042SBarry Smith PetscInt *HT,key; 7473eda8832SBarry Smith MatScalar **HD; 748329f5518SBarry Smith PetscReal tmp; 7496cf91177SBarry Smith #if defined(PETSC_USE_INFO) 750b24ad042SBarry Smith PetscInt ct=0,max=0; 7514a15367fSSatish Balay #endif 752fef45726SSatish Balay 753d64ed03dSBarry Smith PetscFunctionBegin; 754b24ad042SBarry Smith baij->ht_size=(PetscInt)(factor*nz); 7550bdbc534SSatish Balay size = baij->ht_size; 756fef45726SSatish Balay 7570bdbc534SSatish Balay if (baij->ht) { 7580bdbc534SSatish Balay PetscFunctionReturn(0); 759596b8d2eSBarry Smith } 7600bdbc534SSatish Balay 761fef45726SSatish Balay /* Allocate Memory for Hash Table */ 762b24ad042SBarry Smith ierr = PetscMalloc((size)*(sizeof(PetscInt)+sizeof(MatScalar*))+1,&baij->hd);CHKERRQ(ierr); 763b24ad042SBarry Smith baij->ht = (PetscInt*)(baij->hd + size); 764b9e4cc15SSatish Balay HD = baij->hd; 765a07cd24cSSatish Balay HT = baij->ht; 766b9e4cc15SSatish Balay 767b9e4cc15SSatish Balay 768b24ad042SBarry Smith ierr = PetscMemzero(HD,size*(sizeof(PetscInt)+sizeof(PetscScalar*)));CHKERRQ(ierr); 7690bdbc534SSatish Balay 770596b8d2eSBarry Smith 771596b8d2eSBarry Smith /* Loop Over A */ 7720bdbc534SSatish Balay for (i=0; i<a->mbs; i++) { 773596b8d2eSBarry Smith for (j=ai[i]; j<ai[i+1]; j++) { 7740bdbc534SSatish Balay row = i+rstart; 7750bdbc534SSatish Balay col = aj[j]+cstart; 776596b8d2eSBarry Smith 777187ce0cbSSatish Balay key = row*Nbs + col + 1; 778c2760754SSatish Balay h1 = HASH(size,key,tmp); 7790bdbc534SSatish Balay for (k=0; k<size; k++){ 780958c9bccSBarry Smith if (!HT[(h1+k)%size]) { 7810bdbc534SSatish Balay HT[(h1+k)%size] = key; 7820bdbc534SSatish Balay HD[(h1+k)%size] = a->a + j*bs2; 783596b8d2eSBarry Smith break; 7846cf91177SBarry Smith #if defined(PETSC_USE_INFO) 785187ce0cbSSatish Balay } else { 786187ce0cbSSatish Balay ct++; 787187ce0cbSSatish Balay #endif 788596b8d2eSBarry Smith } 789187ce0cbSSatish Balay } 7906cf91177SBarry Smith #if defined(PETSC_USE_INFO) 791187ce0cbSSatish Balay if (k> max) max = k; 792187ce0cbSSatish Balay #endif 793596b8d2eSBarry Smith } 794596b8d2eSBarry Smith } 795596b8d2eSBarry Smith /* Loop Over B */ 7960bdbc534SSatish Balay for (i=0; i<b->mbs; i++) { 797596b8d2eSBarry Smith for (j=bi[i]; j<bi[i+1]; j++) { 7980bdbc534SSatish Balay row = i+rstart; 7990bdbc534SSatish Balay col = garray[bj[j]]; 800187ce0cbSSatish Balay key = row*Nbs + col + 1; 801c2760754SSatish Balay h1 = HASH(size,key,tmp); 8020bdbc534SSatish Balay for (k=0; k<size; k++){ 803958c9bccSBarry Smith if (!HT[(h1+k)%size]) { 8040bdbc534SSatish Balay HT[(h1+k)%size] = key; 8050bdbc534SSatish Balay HD[(h1+k)%size] = b->a + j*bs2; 806596b8d2eSBarry Smith break; 8076cf91177SBarry Smith #if defined(PETSC_USE_INFO) 808187ce0cbSSatish Balay } else { 809187ce0cbSSatish Balay ct++; 810187ce0cbSSatish Balay #endif 811596b8d2eSBarry Smith } 812187ce0cbSSatish Balay } 8136cf91177SBarry Smith #if defined(PETSC_USE_INFO) 814187ce0cbSSatish Balay if (k> max) max = k; 815187ce0cbSSatish Balay #endif 816596b8d2eSBarry Smith } 817596b8d2eSBarry Smith } 818596b8d2eSBarry Smith 819596b8d2eSBarry Smith /* Print Summary */ 8206cf91177SBarry Smith #if defined(PETSC_USE_INFO) 821c38d4ed2SBarry Smith for (i=0,j=0; i<size; i++) { 822596b8d2eSBarry Smith if (HT[i]) {j++;} 823c38d4ed2SBarry Smith } 8241e2582c4SBarry Smith ierr = PetscInfo2(mat,"Average Search = %5.2f,max search = %D\n",(!j)? 0.0:((PetscReal)(ct+j))/j,max);CHKERRQ(ierr); 825187ce0cbSSatish Balay #endif 8263a40ed3dSBarry Smith PetscFunctionReturn(0); 827596b8d2eSBarry Smith } 82857b952d6SSatish Balay 8294a2ae208SSatish Balay #undef __FUNCT__ 8304a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyBegin_MPIBAIJ" 831dfbe8321SBarry Smith PetscErrorCode MatAssemblyBegin_MPIBAIJ(Mat mat,MatAssemblyType mode) 832bbb85fb3SSatish Balay { 833bbb85fb3SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 834dfbe8321SBarry Smith PetscErrorCode ierr; 835b24ad042SBarry Smith PetscInt nstash,reallocs; 836bbb85fb3SSatish Balay InsertMode addv; 837bbb85fb3SSatish Balay 838bbb85fb3SSatish Balay PetscFunctionBegin; 839bbb85fb3SSatish Balay if (baij->donotstash) { 840bbb85fb3SSatish Balay PetscFunctionReturn(0); 841bbb85fb3SSatish Balay } 842bbb85fb3SSatish Balay 843bbb85fb3SSatish Balay /* make sure all processors are either in INSERTMODE or ADDMODE */ 8447adad957SLisandro Dalcin ierr = MPI_Allreduce(&mat->insertmode,&addv,1,MPI_INT,MPI_BOR,((PetscObject)mat)->comm);CHKERRQ(ierr); 845bbb85fb3SSatish Balay if (addv == (ADD_VALUES|INSERT_VALUES)) { 84629bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Some processors inserted others added"); 847bbb85fb3SSatish Balay } 848bbb85fb3SSatish Balay mat->insertmode = addv; /* in case this processor had no cache */ 849bbb85fb3SSatish Balay 850d0f46423SBarry Smith ierr = MatStashScatterBegin_Private(mat,&mat->stash,mat->rmap->range);CHKERRQ(ierr); 8511e2582c4SBarry Smith ierr = MatStashScatterBegin_Private(mat,&mat->bstash,baij->rangebs);CHKERRQ(ierr); 8528798bf22SSatish Balay ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr); 8531e2582c4SBarry Smith ierr = PetscInfo2(mat,"Stash has %D entries,uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr); 85446680499SSatish Balay ierr = MatStashGetInfo_Private(&mat->bstash,&nstash,&reallocs);CHKERRQ(ierr); 8551e2582c4SBarry Smith ierr = PetscInfo2(mat,"Block-Stash has %D entries, uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr); 856bbb85fb3SSatish Balay PetscFunctionReturn(0); 857bbb85fb3SSatish Balay } 858bbb85fb3SSatish Balay 8594a2ae208SSatish Balay #undef __FUNCT__ 8604a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyEnd_MPIBAIJ" 861dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_MPIBAIJ(Mat mat,MatAssemblyType mode) 862bbb85fb3SSatish Balay { 863bbb85fb3SSatish Balay Mat_MPIBAIJ *baij=(Mat_MPIBAIJ*)mat->data; 86491c97fd4SSatish Balay Mat_SeqBAIJ *a=(Mat_SeqBAIJ*)baij->A->data; 8656849ba73SBarry Smith PetscErrorCode ierr; 866b24ad042SBarry Smith PetscInt i,j,rstart,ncols,flg,bs2=baij->bs2; 867e44c0bd4SBarry Smith PetscInt *row,*col; 868e44c0bd4SBarry Smith PetscTruth r1,r2,r3,other_disassembled; 8693eda8832SBarry Smith MatScalar *val; 870bbb85fb3SSatish Balay InsertMode addv = mat->insertmode; 871b24ad042SBarry Smith PetscMPIInt n; 872bbb85fb3SSatish Balay 87391c97fd4SSatish Balay /* do not use 'b=(Mat_SeqBAIJ*)baij->B->data' as B can be reset in disassembly */ 874bbb85fb3SSatish Balay PetscFunctionBegin; 875bbb85fb3SSatish Balay if (!baij->donotstash) { 876a2d1c673SSatish Balay while (1) { 8778798bf22SSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 878a2d1c673SSatish Balay if (!flg) break; 879a2d1c673SSatish Balay 880bbb85fb3SSatish Balay for (i=0; i<n;) { 881bbb85fb3SSatish Balay /* Now identify the consecutive vals belonging to the same row */ 882bbb85fb3SSatish Balay for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; } 883bbb85fb3SSatish Balay if (j < n) ncols = j-i; 884bbb85fb3SSatish Balay else ncols = n-i; 885bbb85fb3SSatish Balay /* Now assemble all these values with a single function call */ 88697e5c40aSBarry Smith ierr = MatSetValues_MPIBAIJ(mat,1,row+i,ncols,col+i,val+i,addv);CHKERRQ(ierr); 887bbb85fb3SSatish Balay i = j; 888bbb85fb3SSatish Balay } 889bbb85fb3SSatish Balay } 8908798bf22SSatish Balay ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr); 891a2d1c673SSatish Balay /* Now process the block-stash. Since the values are stashed column-oriented, 892a2d1c673SSatish Balay set the roworiented flag to column oriented, and after MatSetValues() 893a2d1c673SSatish Balay restore the original flags */ 894a2d1c673SSatish Balay r1 = baij->roworiented; 895a2d1c673SSatish Balay r2 = a->roworiented; 89691c97fd4SSatish Balay r3 = ((Mat_SeqBAIJ*)baij->B->data)->roworiented; 8977c922b88SBarry Smith baij->roworiented = PETSC_FALSE; 8987c922b88SBarry Smith a->roworiented = PETSC_FALSE; 89991c97fd4SSatish Balay (((Mat_SeqBAIJ*)baij->B->data))->roworiented = PETSC_FALSE; /* b->roworiented */ 900a2d1c673SSatish Balay while (1) { 9018798bf22SSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->bstash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 902a2d1c673SSatish Balay if (!flg) break; 903a2d1c673SSatish Balay 904a2d1c673SSatish Balay for (i=0; i<n;) { 905a2d1c673SSatish Balay /* Now identify the consecutive vals belonging to the same row */ 906a2d1c673SSatish Balay for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; } 907a2d1c673SSatish Balay if (j < n) ncols = j-i; 908a2d1c673SSatish Balay else ncols = n-i; 90997e5c40aSBarry Smith ierr = MatSetValuesBlocked_MPIBAIJ(mat,1,row+i,ncols,col+i,val+i*bs2,addv);CHKERRQ(ierr); 910a2d1c673SSatish Balay i = j; 911a2d1c673SSatish Balay } 912a2d1c673SSatish Balay } 9138798bf22SSatish Balay ierr = MatStashScatterEnd_Private(&mat->bstash);CHKERRQ(ierr); 914a2d1c673SSatish Balay baij->roworiented = r1; 915a2d1c673SSatish Balay a->roworiented = r2; 91691c97fd4SSatish Balay ((Mat_SeqBAIJ*)baij->B->data)->roworiented = r3; /* b->roworiented */ 917bbb85fb3SSatish Balay } 918bbb85fb3SSatish Balay 919bbb85fb3SSatish Balay ierr = MatAssemblyBegin(baij->A,mode);CHKERRQ(ierr); 920bbb85fb3SSatish Balay ierr = MatAssemblyEnd(baij->A,mode);CHKERRQ(ierr); 921bbb85fb3SSatish Balay 922bbb85fb3SSatish Balay /* determine if any processor has disassembled, if so we must 923bbb85fb3SSatish Balay also disassemble ourselfs, in order that we may reassemble. */ 924bbb85fb3SSatish Balay /* 925bbb85fb3SSatish Balay if nonzero structure of submatrix B cannot change then we know that 926bbb85fb3SSatish Balay no processor disassembled thus we can skip this stuff 927bbb85fb3SSatish Balay */ 928bbb85fb3SSatish Balay if (!((Mat_SeqBAIJ*)baij->B->data)->nonew) { 9297adad957SLisandro Dalcin ierr = MPI_Allreduce(&mat->was_assembled,&other_disassembled,1,MPI_INT,MPI_PROD,((PetscObject)mat)->comm);CHKERRQ(ierr); 930bbb85fb3SSatish Balay if (mat->was_assembled && !other_disassembled) { 931bbb85fb3SSatish Balay ierr = DisAssemble_MPIBAIJ(mat);CHKERRQ(ierr); 932bbb85fb3SSatish Balay } 933bbb85fb3SSatish Balay } 934bbb85fb3SSatish Balay 935bbb85fb3SSatish Balay if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) { 936bbb85fb3SSatish Balay ierr = MatSetUpMultiply_MPIBAIJ(mat);CHKERRQ(ierr); 937bbb85fb3SSatish Balay } 93891c97fd4SSatish Balay ((Mat_SeqBAIJ*)baij->B->data)->compressedrow.use = PETSC_TRUE; /* b->compressedrow.use */ 939bbb85fb3SSatish Balay ierr = MatAssemblyBegin(baij->B,mode);CHKERRQ(ierr); 940bbb85fb3SSatish Balay ierr = MatAssemblyEnd(baij->B,mode);CHKERRQ(ierr); 941bbb85fb3SSatish Balay 9426cf91177SBarry Smith #if defined(PETSC_USE_INFO) 943bbb85fb3SSatish Balay if (baij->ht && mode== MAT_FINAL_ASSEMBLY) { 9441e2582c4SBarry Smith ierr = PetscInfo1(mat,"Average Hash Table Search in MatSetValues = %5.2f\n",((PetscReal)baij->ht_total_ct)/baij->ht_insert_ct);CHKERRQ(ierr); 945bbb85fb3SSatish Balay baij->ht_total_ct = 0; 946bbb85fb3SSatish Balay baij->ht_insert_ct = 0; 947bbb85fb3SSatish Balay } 948bbb85fb3SSatish Balay #endif 949bbb85fb3SSatish Balay if (baij->ht_flag && !baij->ht && mode == MAT_FINAL_ASSEMBLY) { 950bbb85fb3SSatish Balay ierr = MatCreateHashTable_MPIBAIJ_Private(mat,baij->ht_fact);CHKERRQ(ierr); 951bbb85fb3SSatish Balay mat->ops->setvalues = MatSetValues_MPIBAIJ_HT; 952bbb85fb3SSatish Balay mat->ops->setvaluesblocked = MatSetValuesBlocked_MPIBAIJ_HT; 953bbb85fb3SSatish Balay } 954bbb85fb3SSatish Balay 955606d414cSSatish Balay ierr = PetscFree(baij->rowvalues);CHKERRQ(ierr); 956606d414cSSatish Balay baij->rowvalues = 0; 957bbb85fb3SSatish Balay PetscFunctionReturn(0); 958bbb85fb3SSatish Balay } 95957b952d6SSatish Balay 9604a2ae208SSatish Balay #undef __FUNCT__ 9614a2ae208SSatish Balay #define __FUNCT__ "MatView_MPIBAIJ_ASCIIorDraworSocket" 9626849ba73SBarry Smith static PetscErrorCode MatView_MPIBAIJ_ASCIIorDraworSocket(Mat mat,PetscViewer viewer) 96357b952d6SSatish Balay { 96457b952d6SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 965dfbe8321SBarry Smith PetscErrorCode ierr; 966b24ad042SBarry Smith PetscMPIInt size = baij->size,rank = baij->rank; 967d0f46423SBarry Smith PetscInt bs = mat->rmap->bs; 96832077d6dSBarry Smith PetscTruth iascii,isdraw; 969b0a32e0cSBarry Smith PetscViewer sviewer; 970f3ef73ceSBarry Smith PetscViewerFormat format; 97157b952d6SSatish Balay 972d64ed03dSBarry Smith PetscFunctionBegin; 97332077d6dSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&iascii);CHKERRQ(ierr); 974fb9695e5SSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr); 97532077d6dSBarry Smith if (iascii) { 976b0a32e0cSBarry Smith ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr); 977456192e2SBarry Smith if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 9784e220ebcSLois Curfman McInnes MatInfo info; 9797adad957SLisandro Dalcin ierr = MPI_Comm_rank(((PetscObject)mat)->comm,&rank);CHKERRQ(ierr); 980d41123aaSBarry Smith ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr); 98177431f27SBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Local rows %D nz %D nz alloced %D bs %D mem %D\n", 982d0f46423SBarry Smith rank,mat->rmap->N,(PetscInt)info.nz_used*bs,(PetscInt)info.nz_allocated*bs, 983d0f46423SBarry Smith mat->rmap->bs,(PetscInt)info.memory);CHKERRQ(ierr); 984d132466eSBarry Smith ierr = MatGetInfo(baij->A,MAT_LOCAL,&info);CHKERRQ(ierr); 98577431f27SBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] on-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used*bs);CHKERRQ(ierr); 986d132466eSBarry Smith ierr = MatGetInfo(baij->B,MAT_LOCAL,&info);CHKERRQ(ierr); 98777431f27SBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] off-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used*bs);CHKERRQ(ierr); 988b0a32e0cSBarry Smith ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 98907d81ca4SBarry Smith ierr = PetscViewerASCIIPrintf(viewer,"Information on VecScatter used in matrix-vector product: \n");CHKERRQ(ierr); 99057b952d6SSatish Balay ierr = VecScatterView(baij->Mvctx,viewer);CHKERRQ(ierr); 9913a40ed3dSBarry Smith PetscFunctionReturn(0); 992fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_INFO) { 99377431f27SBarry Smith ierr = PetscViewerASCIIPrintf(viewer," block size is %D\n",bs);CHKERRQ(ierr); 9943a40ed3dSBarry Smith PetscFunctionReturn(0); 99504929863SHong Zhang } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) { 99604929863SHong Zhang PetscFunctionReturn(0); 99757b952d6SSatish Balay } 99857b952d6SSatish Balay } 99957b952d6SSatish Balay 10000f5bd95cSBarry Smith if (isdraw) { 1001b0a32e0cSBarry Smith PetscDraw draw; 100257b952d6SSatish Balay PetscTruth isnull; 1003b0a32e0cSBarry Smith ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr); 1004b0a32e0cSBarry Smith ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); if (isnull) PetscFunctionReturn(0); 100557b952d6SSatish Balay } 100657b952d6SSatish Balay 100757b952d6SSatish Balay if (size == 1) { 10087adad957SLisandro Dalcin ierr = PetscObjectSetName((PetscObject)baij->A,((PetscObject)mat)->name);CHKERRQ(ierr); 100957b952d6SSatish Balay ierr = MatView(baij->A,viewer);CHKERRQ(ierr); 1010d64ed03dSBarry Smith } else { 101157b952d6SSatish Balay /* assemble the entire matrix onto first processor. */ 101257b952d6SSatish Balay Mat A; 101357b952d6SSatish Balay Mat_SeqBAIJ *Aloc; 1014d0f46423SBarry Smith PetscInt M = mat->rmap->N,N = mat->cmap->N,*ai,*aj,col,i,j,k,*rvals,mbs = baij->mbs; 10153eda8832SBarry Smith MatScalar *a; 101657b952d6SSatish Balay 1017f204ca49SKris Buschelman /* Here we are creating a temporary matrix, so will assume MPIBAIJ is acceptable */ 1018f204ca49SKris Buschelman /* Perhaps this should be the type of mat? */ 10197adad957SLisandro Dalcin ierr = MatCreate(((PetscObject)mat)->comm,&A);CHKERRQ(ierr); 102057b952d6SSatish Balay if (!rank) { 1021f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,M,N,M,N);CHKERRQ(ierr); 1022d64ed03dSBarry Smith } else { 1023f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,0,0,M,N);CHKERRQ(ierr); 102457b952d6SSatish Balay } 1025f204ca49SKris Buschelman ierr = MatSetType(A,MATMPIBAIJ);CHKERRQ(ierr); 1026d0f46423SBarry Smith ierr = MatMPIBAIJSetPreallocation(A,mat->rmap->bs,0,PETSC_NULL,0,PETSC_NULL);CHKERRQ(ierr); 102752e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,A);CHKERRQ(ierr); 102857b952d6SSatish Balay 102957b952d6SSatish Balay /* copy over the A part */ 103057b952d6SSatish Balay Aloc = (Mat_SeqBAIJ*)baij->A->data; 103157b952d6SSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 1032b24ad042SBarry Smith ierr = PetscMalloc(bs*sizeof(PetscInt),&rvals);CHKERRQ(ierr); 103357b952d6SSatish Balay 103457b952d6SSatish Balay for (i=0; i<mbs; i++) { 1035899cda47SBarry Smith rvals[0] = bs*(baij->rstartbs + i); 103657b952d6SSatish Balay for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; } 103757b952d6SSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 1038899cda47SBarry Smith col = (baij->cstartbs+aj[j])*bs; 103957b952d6SSatish Balay for (k=0; k<bs; k++) { 104097e5c40aSBarry Smith ierr = MatSetValues_MPIBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 1041cee3aa6bSSatish Balay col++; a += bs; 104257b952d6SSatish Balay } 104357b952d6SSatish Balay } 104457b952d6SSatish Balay } 104557b952d6SSatish Balay /* copy over the B part */ 104657b952d6SSatish Balay Aloc = (Mat_SeqBAIJ*)baij->B->data; 104757b952d6SSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 104857b952d6SSatish Balay for (i=0; i<mbs; i++) { 1049899cda47SBarry Smith rvals[0] = bs*(baij->rstartbs + i); 105057b952d6SSatish Balay for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; } 105157b952d6SSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 105257b952d6SSatish Balay col = baij->garray[aj[j]]*bs; 105357b952d6SSatish Balay for (k=0; k<bs; k++) { 105497e5c40aSBarry Smith ierr = MatSetValues_MPIBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 1055cee3aa6bSSatish Balay col++; a += bs; 105657b952d6SSatish Balay } 105757b952d6SSatish Balay } 105857b952d6SSatish Balay } 1059606d414cSSatish Balay ierr = PetscFree(rvals);CHKERRQ(ierr); 10606d4a8577SBarry Smith ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 10616d4a8577SBarry Smith ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 106255843e3eSBarry Smith /* 106355843e3eSBarry Smith Everyone has to call to draw the matrix since the graphics waits are 1064b0a32e0cSBarry Smith synchronized across all processors that share the PetscDraw object 106555843e3eSBarry Smith */ 1066b0a32e0cSBarry Smith ierr = PetscViewerGetSingleton(viewer,&sviewer);CHKERRQ(ierr); 1067f14a1c24SBarry Smith if (!rank) { 10687adad957SLisandro Dalcin ierr = PetscObjectSetName((PetscObject)((Mat_MPIBAIJ*)(A->data))->A,((PetscObject)mat)->name);CHKERRQ(ierr); 10696831982aSBarry Smith ierr = MatView(((Mat_MPIBAIJ*)(A->data))->A,sviewer);CHKERRQ(ierr); 107057b952d6SSatish Balay } 1071b0a32e0cSBarry Smith ierr = PetscViewerRestoreSingleton(viewer,&sviewer);CHKERRQ(ierr); 107257b952d6SSatish Balay ierr = MatDestroy(A);CHKERRQ(ierr); 107357b952d6SSatish Balay } 10743a40ed3dSBarry Smith PetscFunctionReturn(0); 107557b952d6SSatish Balay } 107657b952d6SSatish Balay 10774a2ae208SSatish Balay #undef __FUNCT__ 10784a2ae208SSatish Balay #define __FUNCT__ "MatView_MPIBAIJ" 1079dfbe8321SBarry Smith PetscErrorCode MatView_MPIBAIJ(Mat mat,PetscViewer viewer) 108057b952d6SSatish Balay { 1081dfbe8321SBarry Smith PetscErrorCode ierr; 108232077d6dSBarry Smith PetscTruth iascii,isdraw,issocket,isbinary; 108357b952d6SSatish Balay 1084d64ed03dSBarry Smith PetscFunctionBegin; 108532077d6dSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&iascii);CHKERRQ(ierr); 1086fb9695e5SSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr); 1087b0a32e0cSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_SOCKET,&issocket);CHKERRQ(ierr); 1088fb9695e5SSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_BINARY,&isbinary);CHKERRQ(ierr); 108932077d6dSBarry Smith if (iascii || isdraw || issocket || isbinary) { 10907b2a1423SBarry Smith ierr = MatView_MPIBAIJ_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr); 10915cd90555SBarry Smith } else { 109279a5c55eSBarry Smith SETERRQ1(PETSC_ERR_SUP,"Viewer type %s not supported by MPIBAIJ matrices",((PetscObject)viewer)->type_name); 109357b952d6SSatish Balay } 10943a40ed3dSBarry Smith PetscFunctionReturn(0); 109557b952d6SSatish Balay } 109657b952d6SSatish Balay 10974a2ae208SSatish Balay #undef __FUNCT__ 10984a2ae208SSatish Balay #define __FUNCT__ "MatDestroy_MPIBAIJ" 1099dfbe8321SBarry Smith PetscErrorCode MatDestroy_MPIBAIJ(Mat mat) 110079bdfe76SSatish Balay { 110179bdfe76SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 1102dfbe8321SBarry Smith PetscErrorCode ierr; 110379bdfe76SSatish Balay 1104d64ed03dSBarry Smith PetscFunctionBegin; 1105aa482453SBarry Smith #if defined(PETSC_USE_LOG) 1106d0f46423SBarry Smith PetscLogObjectState((PetscObject)mat,"Rows=%D,Cols=%D",mat->rmap->N,mat->cmap->N); 110779bdfe76SSatish Balay #endif 11088798bf22SSatish Balay ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr); 11098798bf22SSatish Balay ierr = MatStashDestroy_Private(&mat->bstash);CHKERRQ(ierr); 111079bdfe76SSatish Balay ierr = MatDestroy(baij->A);CHKERRQ(ierr); 111179bdfe76SSatish Balay ierr = MatDestroy(baij->B);CHKERRQ(ierr); 1112aa482453SBarry Smith #if defined (PETSC_USE_CTABLE) 11139c666560SBarry Smith if (baij->colmap) {ierr = PetscTableDestroy(baij->colmap);CHKERRQ(ierr);} 111448e59246SSatish Balay #else 111505b42c5fSBarry Smith ierr = PetscFree(baij->colmap);CHKERRQ(ierr); 111648e59246SSatish Balay #endif 111705b42c5fSBarry Smith ierr = PetscFree(baij->garray);CHKERRQ(ierr); 1118606d414cSSatish Balay if (baij->lvec) {ierr = VecDestroy(baij->lvec);CHKERRQ(ierr);} 1119606d414cSSatish Balay if (baij->Mvctx) {ierr = VecScatterDestroy(baij->Mvctx);CHKERRQ(ierr);} 112005b42c5fSBarry Smith ierr = PetscFree(baij->rowvalues);CHKERRQ(ierr); 112105b42c5fSBarry Smith ierr = PetscFree(baij->barray);CHKERRQ(ierr); 112205b42c5fSBarry Smith ierr = PetscFree(baij->hd);CHKERRQ(ierr); 1123899cda47SBarry Smith ierr = PetscFree(baij->rangebs);CHKERRQ(ierr); 1124606d414cSSatish Balay ierr = PetscFree(baij);CHKERRQ(ierr); 1125901853e0SKris Buschelman 1126dbd8c25aSHong Zhang ierr = PetscObjectChangeTypeName((PetscObject)mat,0);CHKERRQ(ierr); 1127901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatStoreValues_C","",PETSC_NULL);CHKERRQ(ierr); 1128901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatRetrieveValues_C","",PETSC_NULL);CHKERRQ(ierr); 1129901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatGetDiagonalBlock_C","",PETSC_NULL);CHKERRQ(ierr); 1130901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPIBAIJSetPreallocation_C","",PETSC_NULL);CHKERRQ(ierr); 1131aac34f13SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPIBAIJSetPreallocationCSR_C","",PETSC_NULL);CHKERRQ(ierr); 1132901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDiagonalScaleLocal_C","",PETSC_NULL);CHKERRQ(ierr); 1133901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatSetHashTableFactor_C","",PETSC_NULL);CHKERRQ(ierr); 11343a40ed3dSBarry Smith PetscFunctionReturn(0); 113579bdfe76SSatish Balay } 113679bdfe76SSatish Balay 11374a2ae208SSatish Balay #undef __FUNCT__ 11384a2ae208SSatish Balay #define __FUNCT__ "MatMult_MPIBAIJ" 1139dfbe8321SBarry Smith PetscErrorCode MatMult_MPIBAIJ(Mat A,Vec xx,Vec yy) 1140cee3aa6bSSatish Balay { 1141cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1142dfbe8321SBarry Smith PetscErrorCode ierr; 1143b24ad042SBarry Smith PetscInt nt; 1144cee3aa6bSSatish Balay 1145d64ed03dSBarry Smith PetscFunctionBegin; 1146e1311b90SBarry Smith ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr); 1147d0f46423SBarry Smith if (nt != A->cmap->n) { 114829bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx"); 114947b4a8eaSLois Curfman McInnes } 1150e1311b90SBarry Smith ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr); 1151d0f46423SBarry Smith if (nt != A->rmap->n) { 115229bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible parition of A and yy"); 115347b4a8eaSLois Curfman McInnes } 1154ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1155f830108cSBarry Smith ierr = (*a->A->ops->mult)(a->A,xx,yy);CHKERRQ(ierr); 1156ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1157f830108cSBarry Smith ierr = (*a->B->ops->multadd)(a->B,a->lvec,yy,yy);CHKERRQ(ierr); 11583a40ed3dSBarry Smith PetscFunctionReturn(0); 1159cee3aa6bSSatish Balay } 1160cee3aa6bSSatish Balay 11614a2ae208SSatish Balay #undef __FUNCT__ 11624a2ae208SSatish Balay #define __FUNCT__ "MatMultAdd_MPIBAIJ" 1163dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPIBAIJ(Mat A,Vec xx,Vec yy,Vec zz) 1164cee3aa6bSSatish Balay { 1165cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1166dfbe8321SBarry Smith PetscErrorCode ierr; 1167d64ed03dSBarry Smith 1168d64ed03dSBarry Smith PetscFunctionBegin; 1169ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1170f830108cSBarry Smith ierr = (*a->A->ops->multadd)(a->A,xx,yy,zz);CHKERRQ(ierr); 1171ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1172f830108cSBarry Smith ierr = (*a->B->ops->multadd)(a->B,a->lvec,zz,zz);CHKERRQ(ierr); 11733a40ed3dSBarry Smith PetscFunctionReturn(0); 1174cee3aa6bSSatish Balay } 1175cee3aa6bSSatish Balay 11764a2ae208SSatish Balay #undef __FUNCT__ 11774a2ae208SSatish Balay #define __FUNCT__ "MatMultTranspose_MPIBAIJ" 1178dfbe8321SBarry Smith PetscErrorCode MatMultTranspose_MPIBAIJ(Mat A,Vec xx,Vec yy) 1179cee3aa6bSSatish Balay { 1180cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1181dfbe8321SBarry Smith PetscErrorCode ierr; 1182a5ff213dSBarry Smith PetscTruth merged; 1183cee3aa6bSSatish Balay 1184d64ed03dSBarry Smith PetscFunctionBegin; 1185a5ff213dSBarry Smith ierr = VecScatterGetMerged(a->Mvctx,&merged);CHKERRQ(ierr); 1186cee3aa6bSSatish Balay /* do nondiagonal part */ 11877c922b88SBarry Smith ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr); 1188a5ff213dSBarry Smith if (!merged) { 1189cee3aa6bSSatish Balay /* send it on its way */ 1190ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 1191cee3aa6bSSatish Balay /* do local part */ 11927c922b88SBarry Smith ierr = (*a->A->ops->multtranspose)(a->A,xx,yy);CHKERRQ(ierr); 1193cee3aa6bSSatish Balay /* receive remote parts: note this assumes the values are not actually */ 1194a5ff213dSBarry Smith /* inserted in yy until the next line */ 1195ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 1196a5ff213dSBarry Smith } else { 1197a5ff213dSBarry Smith /* do local part */ 1198a5ff213dSBarry Smith ierr = (*a->A->ops->multtranspose)(a->A,xx,yy);CHKERRQ(ierr); 1199a5ff213dSBarry Smith /* send it on its way */ 1200ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 1201a5ff213dSBarry Smith /* values actually were received in the Begin() but we need to call this nop */ 1202ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 1203a5ff213dSBarry Smith } 12043a40ed3dSBarry Smith PetscFunctionReturn(0); 1205cee3aa6bSSatish Balay } 1206cee3aa6bSSatish Balay 12074a2ae208SSatish Balay #undef __FUNCT__ 12084a2ae208SSatish Balay #define __FUNCT__ "MatMultTransposeAdd_MPIBAIJ" 1209dfbe8321SBarry Smith PetscErrorCode MatMultTransposeAdd_MPIBAIJ(Mat A,Vec xx,Vec yy,Vec zz) 1210cee3aa6bSSatish Balay { 1211cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1212dfbe8321SBarry Smith PetscErrorCode ierr; 1213cee3aa6bSSatish Balay 1214d64ed03dSBarry Smith PetscFunctionBegin; 1215cee3aa6bSSatish Balay /* do nondiagonal part */ 12167c922b88SBarry Smith ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr); 1217cee3aa6bSSatish Balay /* send it on its way */ 1218ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 1219cee3aa6bSSatish Balay /* do local part */ 12207c922b88SBarry Smith ierr = (*a->A->ops->multtransposeadd)(a->A,xx,yy,zz);CHKERRQ(ierr); 1221cee3aa6bSSatish Balay /* receive remote parts: note this assumes the values are not actually */ 1222cee3aa6bSSatish Balay /* inserted in yy until the next line, which is true for my implementation*/ 1223cee3aa6bSSatish Balay /* but is not perhaps always true. */ 1224ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 12253a40ed3dSBarry Smith PetscFunctionReturn(0); 1226cee3aa6bSSatish Balay } 1227cee3aa6bSSatish Balay 1228cee3aa6bSSatish Balay /* 1229cee3aa6bSSatish Balay This only works correctly for square matrices where the subblock A->A is the 1230cee3aa6bSSatish Balay diagonal block 1231cee3aa6bSSatish Balay */ 12324a2ae208SSatish Balay #undef __FUNCT__ 12334a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonal_MPIBAIJ" 1234dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_MPIBAIJ(Mat A,Vec v) 1235cee3aa6bSSatish Balay { 1236cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1237dfbe8321SBarry Smith PetscErrorCode ierr; 1238d64ed03dSBarry Smith 1239d64ed03dSBarry Smith PetscFunctionBegin; 1240d0f46423SBarry Smith if (A->rmap->N != A->cmap->N) SETERRQ(PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block"); 12413a40ed3dSBarry Smith ierr = MatGetDiagonal(a->A,v);CHKERRQ(ierr); 12423a40ed3dSBarry Smith PetscFunctionReturn(0); 1243cee3aa6bSSatish Balay } 1244cee3aa6bSSatish Balay 12454a2ae208SSatish Balay #undef __FUNCT__ 12464a2ae208SSatish Balay #define __FUNCT__ "MatScale_MPIBAIJ" 1247f4df32b1SMatthew Knepley PetscErrorCode MatScale_MPIBAIJ(Mat A,PetscScalar aa) 1248cee3aa6bSSatish Balay { 1249cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1250dfbe8321SBarry Smith PetscErrorCode ierr; 1251d64ed03dSBarry Smith 1252d64ed03dSBarry Smith PetscFunctionBegin; 1253f4df32b1SMatthew Knepley ierr = MatScale(a->A,aa);CHKERRQ(ierr); 1254f4df32b1SMatthew Knepley ierr = MatScale(a->B,aa);CHKERRQ(ierr); 12553a40ed3dSBarry Smith PetscFunctionReturn(0); 1256cee3aa6bSSatish Balay } 1257026e39d0SSatish Balay 12584a2ae208SSatish Balay #undef __FUNCT__ 12594a2ae208SSatish Balay #define __FUNCT__ "MatGetRow_MPIBAIJ" 1260b24ad042SBarry Smith PetscErrorCode MatGetRow_MPIBAIJ(Mat matin,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 1261acdf5bf4SSatish Balay { 1262acdf5bf4SSatish Balay Mat_MPIBAIJ *mat = (Mat_MPIBAIJ*)matin->data; 126387828ca2SBarry Smith PetscScalar *vworkA,*vworkB,**pvA,**pvB,*v_p; 12646849ba73SBarry Smith PetscErrorCode ierr; 1265d0f46423SBarry Smith PetscInt bs = matin->rmap->bs,bs2 = mat->bs2,i,*cworkA,*cworkB,**pcA,**pcB; 1266d0f46423SBarry Smith PetscInt nztot,nzA,nzB,lrow,brstart = matin->rmap->rstart,brend = matin->rmap->rend; 1267899cda47SBarry Smith PetscInt *cmap,*idx_p,cstart = mat->cstartbs; 1268acdf5bf4SSatish Balay 1269d64ed03dSBarry Smith PetscFunctionBegin; 1270abc0a331SBarry Smith if (mat->getrowactive) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Already active"); 1271acdf5bf4SSatish Balay mat->getrowactive = PETSC_TRUE; 1272acdf5bf4SSatish Balay 1273acdf5bf4SSatish Balay if (!mat->rowvalues && (idx || v)) { 1274acdf5bf4SSatish Balay /* 1275acdf5bf4SSatish Balay allocate enough space to hold information from the longest row. 1276acdf5bf4SSatish Balay */ 1277acdf5bf4SSatish Balay Mat_SeqBAIJ *Aa = (Mat_SeqBAIJ*)mat->A->data,*Ba = (Mat_SeqBAIJ*)mat->B->data; 1278b24ad042SBarry Smith PetscInt max = 1,mbs = mat->mbs,tmp; 1279bd16c2feSSatish Balay for (i=0; i<mbs; i++) { 1280acdf5bf4SSatish Balay tmp = Aa->i[i+1] - Aa->i[i] + Ba->i[i+1] - Ba->i[i]; 1281acdf5bf4SSatish Balay if (max < tmp) { max = tmp; } 1282acdf5bf4SSatish Balay } 1283b24ad042SBarry Smith ierr = PetscMalloc(max*bs2*(sizeof(PetscInt)+sizeof(PetscScalar)),&mat->rowvalues);CHKERRQ(ierr); 1284b24ad042SBarry Smith mat->rowindices = (PetscInt*)(mat->rowvalues + max*bs2); 1285acdf5bf4SSatish Balay } 1286acdf5bf4SSatish Balay 128729bbc08cSBarry Smith if (row < brstart || row >= brend) SETERRQ(PETSC_ERR_SUP,"Only local rows") 1288d9d09a02SSatish Balay lrow = row - brstart; 1289acdf5bf4SSatish Balay 1290acdf5bf4SSatish Balay pvA = &vworkA; pcA = &cworkA; pvB = &vworkB; pcB = &cworkB; 1291acdf5bf4SSatish Balay if (!v) {pvA = 0; pvB = 0;} 1292acdf5bf4SSatish Balay if (!idx) {pcA = 0; if (!v) pcB = 0;} 1293f830108cSBarry Smith ierr = (*mat->A->ops->getrow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr); 1294f830108cSBarry Smith ierr = (*mat->B->ops->getrow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr); 1295acdf5bf4SSatish Balay nztot = nzA + nzB; 1296acdf5bf4SSatish Balay 1297acdf5bf4SSatish Balay cmap = mat->garray; 1298acdf5bf4SSatish Balay if (v || idx) { 1299acdf5bf4SSatish Balay if (nztot) { 1300acdf5bf4SSatish Balay /* Sort by increasing column numbers, assuming A and B already sorted */ 1301b24ad042SBarry Smith PetscInt imark = -1; 1302acdf5bf4SSatish Balay if (v) { 1303acdf5bf4SSatish Balay *v = v_p = mat->rowvalues; 1304acdf5bf4SSatish Balay for (i=0; i<nzB; i++) { 1305d9d09a02SSatish Balay if (cmap[cworkB[i]/bs] < cstart) v_p[i] = vworkB[i]; 1306acdf5bf4SSatish Balay else break; 1307acdf5bf4SSatish Balay } 1308acdf5bf4SSatish Balay imark = i; 1309acdf5bf4SSatish Balay for (i=0; i<nzA; i++) v_p[imark+i] = vworkA[i]; 1310acdf5bf4SSatish Balay for (i=imark; i<nzB; i++) v_p[nzA+i] = vworkB[i]; 1311acdf5bf4SSatish Balay } 1312acdf5bf4SSatish Balay if (idx) { 1313acdf5bf4SSatish Balay *idx = idx_p = mat->rowindices; 1314acdf5bf4SSatish Balay if (imark > -1) { 1315acdf5bf4SSatish Balay for (i=0; i<imark; i++) { 1316bd16c2feSSatish Balay idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs; 1317acdf5bf4SSatish Balay } 1318acdf5bf4SSatish Balay } else { 1319acdf5bf4SSatish Balay for (i=0; i<nzB; i++) { 1320d9d09a02SSatish Balay if (cmap[cworkB[i]/bs] < cstart) 1321d9d09a02SSatish Balay idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ; 1322acdf5bf4SSatish Balay else break; 1323acdf5bf4SSatish Balay } 1324acdf5bf4SSatish Balay imark = i; 1325acdf5bf4SSatish Balay } 1326d9d09a02SSatish Balay for (i=0; i<nzA; i++) idx_p[imark+i] = cstart*bs + cworkA[i]; 1327d9d09a02SSatish Balay for (i=imark; i<nzB; i++) idx_p[nzA+i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ; 1328acdf5bf4SSatish Balay } 1329d64ed03dSBarry Smith } else { 1330d212a18eSSatish Balay if (idx) *idx = 0; 1331d212a18eSSatish Balay if (v) *v = 0; 1332d212a18eSSatish Balay } 1333acdf5bf4SSatish Balay } 1334acdf5bf4SSatish Balay *nz = nztot; 1335f830108cSBarry Smith ierr = (*mat->A->ops->restorerow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr); 1336f830108cSBarry Smith ierr = (*mat->B->ops->restorerow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr); 13373a40ed3dSBarry Smith PetscFunctionReturn(0); 1338acdf5bf4SSatish Balay } 1339acdf5bf4SSatish Balay 13404a2ae208SSatish Balay #undef __FUNCT__ 13414a2ae208SSatish Balay #define __FUNCT__ "MatRestoreRow_MPIBAIJ" 1342b24ad042SBarry Smith PetscErrorCode MatRestoreRow_MPIBAIJ(Mat mat,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 1343acdf5bf4SSatish Balay { 1344acdf5bf4SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 1345d64ed03dSBarry Smith 1346d64ed03dSBarry Smith PetscFunctionBegin; 1347abc0a331SBarry Smith if (!baij->getrowactive) { 134829bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"MatGetRow not called"); 1349acdf5bf4SSatish Balay } 1350acdf5bf4SSatish Balay baij->getrowactive = PETSC_FALSE; 13513a40ed3dSBarry Smith PetscFunctionReturn(0); 1352acdf5bf4SSatish Balay } 1353acdf5bf4SSatish Balay 13544a2ae208SSatish Balay #undef __FUNCT__ 13554a2ae208SSatish Balay #define __FUNCT__ "MatZeroEntries_MPIBAIJ" 1356dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_MPIBAIJ(Mat A) 135758667388SSatish Balay { 135858667388SSatish Balay Mat_MPIBAIJ *l = (Mat_MPIBAIJ*)A->data; 1359dfbe8321SBarry Smith PetscErrorCode ierr; 1360d64ed03dSBarry Smith 1361d64ed03dSBarry Smith PetscFunctionBegin; 136258667388SSatish Balay ierr = MatZeroEntries(l->A);CHKERRQ(ierr); 136358667388SSatish Balay ierr = MatZeroEntries(l->B);CHKERRQ(ierr); 13643a40ed3dSBarry Smith PetscFunctionReturn(0); 136558667388SSatish Balay } 13660ac07820SSatish Balay 13674a2ae208SSatish Balay #undef __FUNCT__ 13684a2ae208SSatish Balay #define __FUNCT__ "MatGetInfo_MPIBAIJ" 1369dfbe8321SBarry Smith PetscErrorCode MatGetInfo_MPIBAIJ(Mat matin,MatInfoType flag,MatInfo *info) 13700ac07820SSatish Balay { 13714e220ebcSLois Curfman McInnes Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)matin->data; 13724e220ebcSLois Curfman McInnes Mat A = a->A,B = a->B; 1373dfbe8321SBarry Smith PetscErrorCode ierr; 1374329f5518SBarry Smith PetscReal isend[5],irecv[5]; 13750ac07820SSatish Balay 1376d64ed03dSBarry Smith PetscFunctionBegin; 1377d0f46423SBarry Smith info->block_size = (PetscReal)matin->rmap->bs; 13784e220ebcSLois Curfman McInnes ierr = MatGetInfo(A,MAT_LOCAL,info);CHKERRQ(ierr); 13790e4b21beSBarry Smith isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded; 1380de87f314SBarry Smith isend[3] = info->memory; isend[4] = info->mallocs; 13814e220ebcSLois Curfman McInnes ierr = MatGetInfo(B,MAT_LOCAL,info);CHKERRQ(ierr); 13820e4b21beSBarry Smith isend[0] += info->nz_used; isend[1] += info->nz_allocated; isend[2] += info->nz_unneeded; 1383de87f314SBarry Smith isend[3] += info->memory; isend[4] += info->mallocs; 13840ac07820SSatish Balay if (flag == MAT_LOCAL) { 13854e220ebcSLois Curfman McInnes info->nz_used = isend[0]; 13864e220ebcSLois Curfman McInnes info->nz_allocated = isend[1]; 13874e220ebcSLois Curfman McInnes info->nz_unneeded = isend[2]; 13884e220ebcSLois Curfman McInnes info->memory = isend[3]; 13894e220ebcSLois Curfman McInnes info->mallocs = isend[4]; 13900ac07820SSatish Balay } else if (flag == MAT_GLOBAL_MAX) { 13917adad957SLisandro Dalcin ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_MAX,((PetscObject)matin)->comm);CHKERRQ(ierr); 13924e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 13934e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 13944e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 13954e220ebcSLois Curfman McInnes info->memory = irecv[3]; 13964e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 13970ac07820SSatish Balay } else if (flag == MAT_GLOBAL_SUM) { 13987adad957SLisandro Dalcin ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_SUM,((PetscObject)matin)->comm);CHKERRQ(ierr); 13994e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 14004e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 14014e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 14024e220ebcSLois Curfman McInnes info->memory = irecv[3]; 14034e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 1404d41123aaSBarry Smith } else { 140577431f27SBarry Smith SETERRQ1(PETSC_ERR_ARG_WRONG,"Unknown MatInfoType argument %d",(int)flag); 14060ac07820SSatish Balay } 14074e220ebcSLois Curfman McInnes info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */ 14084e220ebcSLois Curfman McInnes info->fill_ratio_needed = 0; 14094e220ebcSLois Curfman McInnes info->factor_mallocs = 0; 14103a40ed3dSBarry Smith PetscFunctionReturn(0); 14110ac07820SSatish Balay } 14120ac07820SSatish Balay 14134a2ae208SSatish Balay #undef __FUNCT__ 14144a2ae208SSatish Balay #define __FUNCT__ "MatSetOption_MPIBAIJ" 14154e0d8c25SBarry Smith PetscErrorCode MatSetOption_MPIBAIJ(Mat A,MatOption op,PetscTruth flg) 141658667388SSatish Balay { 141758667388SSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1418dfbe8321SBarry Smith PetscErrorCode ierr; 141958667388SSatish Balay 1420d64ed03dSBarry Smith PetscFunctionBegin; 142112c028f9SKris Buschelman switch (op) { 1422512a5fc5SBarry Smith case MAT_NEW_NONZERO_LOCATIONS: 142312c028f9SKris Buschelman case MAT_NEW_NONZERO_ALLOCATION_ERR: 142428b2fa4aSMatthew Knepley case MAT_UNUSED_NONZERO_LOCATION_ERR: 1425a9817697SBarry Smith case MAT_KEEP_NONZERO_PATTERN: 142612c028f9SKris Buschelman case MAT_NEW_NONZERO_LOCATION_ERR: 14274e0d8c25SBarry Smith ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 14284e0d8c25SBarry Smith ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr); 142912c028f9SKris Buschelman break; 143012c028f9SKris Buschelman case MAT_ROW_ORIENTED: 14314e0d8c25SBarry Smith a->roworiented = flg; 14324e0d8c25SBarry Smith ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 14334e0d8c25SBarry Smith ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr); 143412c028f9SKris Buschelman break; 14354e0d8c25SBarry Smith case MAT_NEW_DIAGONALS: 1436290bbb0aSBarry Smith ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr); 143712c028f9SKris Buschelman break; 143812c028f9SKris Buschelman case MAT_IGNORE_OFF_PROC_ENTRIES: 14394e0d8c25SBarry Smith a->donotstash = flg; 144012c028f9SKris Buschelman break; 144112c028f9SKris Buschelman case MAT_USE_HASH_TABLE: 14424e0d8c25SBarry Smith a->ht_flag = flg; 144312c028f9SKris Buschelman break; 144477e54ba9SKris Buschelman case MAT_SYMMETRIC: 144577e54ba9SKris Buschelman case MAT_STRUCTURALLY_SYMMETRIC: 14462188ac68SBarry Smith case MAT_HERMITIAN: 14472188ac68SBarry Smith case MAT_SYMMETRY_ETERNAL: 14484e0d8c25SBarry Smith ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 144977e54ba9SKris Buschelman break; 145012c028f9SKris Buschelman default: 1451ad86a440SBarry Smith SETERRQ1(PETSC_ERR_SUP,"unknown option %d",op); 1452d64ed03dSBarry Smith } 14533a40ed3dSBarry Smith PetscFunctionReturn(0); 145458667388SSatish Balay } 145558667388SSatish Balay 14564a2ae208SSatish Balay #undef __FUNCT__ 14574a2ae208SSatish Balay #define __FUNCT__ "MatTranspose_MPIBAIJ(" 1458fc4dec0aSBarry Smith PetscErrorCode MatTranspose_MPIBAIJ(Mat A,MatReuse reuse,Mat *matout) 14590ac07820SSatish Balay { 14600ac07820SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)A->data; 14610ac07820SSatish Balay Mat_SeqBAIJ *Aloc; 14620ac07820SSatish Balay Mat B; 1463dfbe8321SBarry Smith PetscErrorCode ierr; 1464d0f46423SBarry Smith PetscInt M=A->rmap->N,N=A->cmap->N,*ai,*aj,i,*rvals,j,k,col; 1465d0f46423SBarry Smith PetscInt bs=A->rmap->bs,mbs=baij->mbs; 14663eda8832SBarry Smith MatScalar *a; 14670ac07820SSatish Balay 1468d64ed03dSBarry Smith PetscFunctionBegin; 1469e9695a30SBarry Smith if (reuse == MAT_REUSE_MATRIX && A == *matout && M != N) SETERRQ(PETSC_ERR_ARG_SIZ,"Square matrix only for in-place"); 1470fc4dec0aSBarry Smith if (reuse == MAT_INITIAL_MATRIX || *matout == A) { 14717adad957SLisandro Dalcin ierr = MatCreate(((PetscObject)A)->comm,&B);CHKERRQ(ierr); 1472d0f46423SBarry Smith ierr = MatSetSizes(B,A->cmap->n,A->rmap->n,N,M);CHKERRQ(ierr); 14737adad957SLisandro Dalcin ierr = MatSetType(B,((PetscObject)A)->type_name);CHKERRQ(ierr); 1474d0f46423SBarry Smith ierr = MatMPIBAIJSetPreallocation(B,A->rmap->bs,0,PETSC_NULL,0,PETSC_NULL);CHKERRQ(ierr); 1475fc4dec0aSBarry Smith } else { 1476fc4dec0aSBarry Smith B = *matout; 1477fc4dec0aSBarry Smith } 14780ac07820SSatish Balay 14790ac07820SSatish Balay /* copy over the A part */ 14800ac07820SSatish Balay Aloc = (Mat_SeqBAIJ*)baij->A->data; 14810ac07820SSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 1482b24ad042SBarry Smith ierr = PetscMalloc(bs*sizeof(PetscInt),&rvals);CHKERRQ(ierr); 14830ac07820SSatish Balay 14840ac07820SSatish Balay for (i=0; i<mbs; i++) { 1485899cda47SBarry Smith rvals[0] = bs*(baij->rstartbs + i); 14860ac07820SSatish Balay for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; } 14870ac07820SSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 1488899cda47SBarry Smith col = (baij->cstartbs+aj[j])*bs; 14890ac07820SSatish Balay for (k=0; k<bs; k++) { 149097e5c40aSBarry Smith ierr = MatSetValues_MPIBAIJ(B,1,&col,bs,rvals,a,INSERT_VALUES);CHKERRQ(ierr); 14910ac07820SSatish Balay col++; a += bs; 14920ac07820SSatish Balay } 14930ac07820SSatish Balay } 14940ac07820SSatish Balay } 14950ac07820SSatish Balay /* copy over the B part */ 14960ac07820SSatish Balay Aloc = (Mat_SeqBAIJ*)baij->B->data; 14970ac07820SSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 14980ac07820SSatish Balay for (i=0; i<mbs; i++) { 1499899cda47SBarry Smith rvals[0] = bs*(baij->rstartbs + i); 15000ac07820SSatish Balay for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; } 15010ac07820SSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 15020ac07820SSatish Balay col = baij->garray[aj[j]]*bs; 15030ac07820SSatish Balay for (k=0; k<bs; k++) { 150497e5c40aSBarry Smith ierr = MatSetValues_MPIBAIJ(B,1,&col,bs,rvals,a,INSERT_VALUES);CHKERRQ(ierr); 15050ac07820SSatish Balay col++; a += bs; 15060ac07820SSatish Balay } 15070ac07820SSatish Balay } 15080ac07820SSatish Balay } 1509606d414cSSatish Balay ierr = PetscFree(rvals);CHKERRQ(ierr); 15100ac07820SSatish Balay ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 15110ac07820SSatish Balay ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 15120ac07820SSatish Balay 1513815cbec1SBarry Smith if (reuse == MAT_INITIAL_MATRIX || *matout != A) { 15140ac07820SSatish Balay *matout = B; 15150ac07820SSatish Balay } else { 1516273d9f13SBarry Smith ierr = MatHeaderCopy(A,B);CHKERRQ(ierr); 15170ac07820SSatish Balay } 15183a40ed3dSBarry Smith PetscFunctionReturn(0); 15190ac07820SSatish Balay } 15200e95ebc0SSatish Balay 15214a2ae208SSatish Balay #undef __FUNCT__ 15224a2ae208SSatish Balay #define __FUNCT__ "MatDiagonalScale_MPIBAIJ" 1523dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_MPIBAIJ(Mat mat,Vec ll,Vec rr) 15240e95ebc0SSatish Balay { 152536c4a09eSSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 152636c4a09eSSatish Balay Mat a = baij->A,b = baij->B; 1527dfbe8321SBarry Smith PetscErrorCode ierr; 1528b24ad042SBarry Smith PetscInt s1,s2,s3; 15290e95ebc0SSatish Balay 1530d64ed03dSBarry Smith PetscFunctionBegin; 153136c4a09eSSatish Balay ierr = MatGetLocalSize(mat,&s2,&s3);CHKERRQ(ierr); 153236c4a09eSSatish Balay if (rr) { 153336c4a09eSSatish Balay ierr = VecGetLocalSize(rr,&s1);CHKERRQ(ierr); 153429bbc08cSBarry Smith if (s1!=s3) SETERRQ(PETSC_ERR_ARG_SIZ,"right vector non-conforming local size"); 153536c4a09eSSatish Balay /* Overlap communication with computation. */ 1536ca9f406cSSatish Balay ierr = VecScatterBegin(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 153736c4a09eSSatish Balay } 15380e95ebc0SSatish Balay if (ll) { 15390e95ebc0SSatish Balay ierr = VecGetLocalSize(ll,&s1);CHKERRQ(ierr); 154029bbc08cSBarry Smith if (s1!=s2) SETERRQ(PETSC_ERR_ARG_SIZ,"left vector non-conforming local size"); 1541a21fb8cbSBarry Smith ierr = (*b->ops->diagonalscale)(b,ll,PETSC_NULL);CHKERRQ(ierr); 15420e95ebc0SSatish Balay } 154336c4a09eSSatish Balay /* scale the diagonal block */ 154436c4a09eSSatish Balay ierr = (*a->ops->diagonalscale)(a,ll,rr);CHKERRQ(ierr); 154536c4a09eSSatish Balay 154636c4a09eSSatish Balay if (rr) { 154736c4a09eSSatish Balay /* Do a scatter end and then right scale the off-diagonal block */ 1548ca9f406cSSatish Balay ierr = VecScatterEnd(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1549a21fb8cbSBarry Smith ierr = (*b->ops->diagonalscale)(b,PETSC_NULL,baij->lvec);CHKERRQ(ierr); 155036c4a09eSSatish Balay } 155136c4a09eSSatish Balay 15523a40ed3dSBarry Smith PetscFunctionReturn(0); 15530e95ebc0SSatish Balay } 15540e95ebc0SSatish Balay 15554a2ae208SSatish Balay #undef __FUNCT__ 15564a2ae208SSatish Balay #define __FUNCT__ "MatZeroRows_MPIBAIJ" 1557f4df32b1SMatthew Knepley PetscErrorCode MatZeroRows_MPIBAIJ(Mat A,PetscInt N,const PetscInt rows[],PetscScalar diag) 15580ac07820SSatish Balay { 15590ac07820SSatish Balay Mat_MPIBAIJ *l = (Mat_MPIBAIJ*)A->data; 15606849ba73SBarry Smith PetscErrorCode ierr; 1561b24ad042SBarry Smith PetscMPIInt imdex,size = l->size,n,rank = l->rank; 1562d0f46423SBarry Smith PetscInt i,*owners = A->rmap->range; 1563b24ad042SBarry Smith PetscInt *nprocs,j,idx,nsends,row; 1564b24ad042SBarry Smith PetscInt nmax,*svalues,*starts,*owner,nrecvs; 15657adad957SLisandro Dalcin PetscInt *rvalues,tag = ((PetscObject)A)->tag,count,base,slen,*source,lastidx = -1; 1566d0f46423SBarry Smith PetscInt *lens,*lrows,*values,rstart_bs=A->rmap->rstart; 15677adad957SLisandro Dalcin MPI_Comm comm = ((PetscObject)A)->comm; 15680ac07820SSatish Balay MPI_Request *send_waits,*recv_waits; 15690ac07820SSatish Balay MPI_Status recv_status,*send_status; 15706543fbbaSBarry Smith #if defined(PETSC_DEBUG) 15716543fbbaSBarry Smith PetscTruth found = PETSC_FALSE; 15726543fbbaSBarry Smith #endif 15730ac07820SSatish Balay 1574d64ed03dSBarry Smith PetscFunctionBegin; 15750ac07820SSatish Balay /* first count number of contributors to each processor */ 1576b24ad042SBarry Smith ierr = PetscMalloc(2*size*sizeof(PetscInt),&nprocs);CHKERRQ(ierr); 1577b24ad042SBarry Smith ierr = PetscMemzero(nprocs,2*size*sizeof(PetscInt));CHKERRQ(ierr); 1578b24ad042SBarry Smith ierr = PetscMalloc((N+1)*sizeof(PetscInt),&owner);CHKERRQ(ierr); /* see note*/ 15796543fbbaSBarry Smith j = 0; 15800ac07820SSatish Balay for (i=0; i<N; i++) { 15816543fbbaSBarry Smith if (lastidx > (idx = rows[i])) j = 0; 15826543fbbaSBarry Smith lastidx = idx; 15836543fbbaSBarry Smith for (; j<size; j++) { 1584357c27ecSBarry Smith if (idx >= owners[j] && idx < owners[j+1]) { 15856543fbbaSBarry Smith nprocs[2*j]++; 15866543fbbaSBarry Smith nprocs[2*j+1] = 1; 15876543fbbaSBarry Smith owner[i] = j; 15886543fbbaSBarry Smith #if defined(PETSC_DEBUG) 15896543fbbaSBarry Smith found = PETSC_TRUE; 15906543fbbaSBarry Smith #endif 15916543fbbaSBarry Smith break; 15920ac07820SSatish Balay } 15930ac07820SSatish Balay } 15946543fbbaSBarry Smith #if defined(PETSC_DEBUG) 159529bbc08cSBarry Smith if (!found) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Index out of range"); 15966543fbbaSBarry Smith found = PETSC_FALSE; 15976543fbbaSBarry Smith #endif 15980ac07820SSatish Balay } 1599c1dc657dSBarry Smith nsends = 0; for (i=0; i<size; i++) { nsends += nprocs[2*i+1];} 16000ac07820SSatish Balay 16010ac07820SSatish Balay /* inform other processors of number of messages and max length*/ 1602c1dc657dSBarry Smith ierr = PetscMaxSum(comm,nprocs,&nmax,&nrecvs);CHKERRQ(ierr); 16030ac07820SSatish Balay 16040ac07820SSatish Balay /* post receives: */ 1605b24ad042SBarry Smith ierr = PetscMalloc((nrecvs+1)*(nmax+1)*sizeof(PetscInt),&rvalues);CHKERRQ(ierr); 1606b0a32e0cSBarry Smith ierr = PetscMalloc((nrecvs+1)*sizeof(MPI_Request),&recv_waits);CHKERRQ(ierr); 16070ac07820SSatish Balay for (i=0; i<nrecvs; i++) { 1608b24ad042SBarry Smith ierr = MPI_Irecv(rvalues+nmax*i,nmax,MPIU_INT,MPI_ANY_SOURCE,tag,comm,recv_waits+i);CHKERRQ(ierr); 16090ac07820SSatish Balay } 16100ac07820SSatish Balay 16110ac07820SSatish Balay /* do sends: 16120ac07820SSatish Balay 1) starts[i] gives the starting index in svalues for stuff going to 16130ac07820SSatish Balay the ith processor 16140ac07820SSatish Balay */ 1615b24ad042SBarry Smith ierr = PetscMalloc((N+1)*sizeof(PetscInt),&svalues);CHKERRQ(ierr); 1616b0a32e0cSBarry Smith ierr = PetscMalloc((nsends+1)*sizeof(MPI_Request),&send_waits);CHKERRQ(ierr); 1617b24ad042SBarry Smith ierr = PetscMalloc((size+1)*sizeof(PetscInt),&starts);CHKERRQ(ierr); 16180ac07820SSatish Balay starts[0] = 0; 1619c1dc657dSBarry Smith for (i=1; i<size; i++) { starts[i] = starts[i-1] + nprocs[2*i-2];} 16200ac07820SSatish Balay for (i=0; i<N; i++) { 16210ac07820SSatish Balay svalues[starts[owner[i]]++] = rows[i]; 16220ac07820SSatish Balay } 16230ac07820SSatish Balay 16240ac07820SSatish Balay starts[0] = 0; 1625c1dc657dSBarry Smith for (i=1; i<size+1; i++) { starts[i] = starts[i-1] + nprocs[2*i-2];} 16260ac07820SSatish Balay count = 0; 16270ac07820SSatish Balay for (i=0; i<size; i++) { 1628c1dc657dSBarry Smith if (nprocs[2*i+1]) { 1629b24ad042SBarry Smith ierr = MPI_Isend(svalues+starts[i],nprocs[2*i],MPIU_INT,i,tag,comm,send_waits+count++);CHKERRQ(ierr); 16300ac07820SSatish Balay } 16310ac07820SSatish Balay } 1632606d414cSSatish Balay ierr = PetscFree(starts);CHKERRQ(ierr); 16330ac07820SSatish Balay 1634357c27ecSBarry Smith base = owners[rank]; 16350ac07820SSatish Balay 16360ac07820SSatish Balay /* wait on receives */ 1637b24ad042SBarry Smith ierr = PetscMalloc(2*(nrecvs+1)*sizeof(PetscInt),&lens);CHKERRQ(ierr); 16380ac07820SSatish Balay source = lens + nrecvs; 16390ac07820SSatish Balay count = nrecvs; slen = 0; 16400ac07820SSatish Balay while (count) { 1641ca161407SBarry Smith ierr = MPI_Waitany(nrecvs,recv_waits,&imdex,&recv_status);CHKERRQ(ierr); 16420ac07820SSatish Balay /* unpack receives into our local space */ 1643b24ad042SBarry Smith ierr = MPI_Get_count(&recv_status,MPIU_INT,&n);CHKERRQ(ierr); 16440ac07820SSatish Balay source[imdex] = recv_status.MPI_SOURCE; 16450ac07820SSatish Balay lens[imdex] = n; 16460ac07820SSatish Balay slen += n; 16470ac07820SSatish Balay count--; 16480ac07820SSatish Balay } 1649606d414cSSatish Balay ierr = PetscFree(recv_waits);CHKERRQ(ierr); 16500ac07820SSatish Balay 16510ac07820SSatish Balay /* move the data into the send scatter */ 1652b24ad042SBarry Smith ierr = PetscMalloc((slen+1)*sizeof(PetscInt),&lrows);CHKERRQ(ierr); 16530ac07820SSatish Balay count = 0; 16540ac07820SSatish Balay for (i=0; i<nrecvs; i++) { 16550ac07820SSatish Balay values = rvalues + i*nmax; 16560ac07820SSatish Balay for (j=0; j<lens[i]; j++) { 16570ac07820SSatish Balay lrows[count++] = values[j] - base; 16580ac07820SSatish Balay } 16590ac07820SSatish Balay } 1660606d414cSSatish Balay ierr = PetscFree(rvalues);CHKERRQ(ierr); 1661606d414cSSatish Balay ierr = PetscFree(lens);CHKERRQ(ierr); 1662606d414cSSatish Balay ierr = PetscFree(owner);CHKERRQ(ierr); 1663606d414cSSatish Balay ierr = PetscFree(nprocs);CHKERRQ(ierr); 16640ac07820SSatish Balay 16650ac07820SSatish Balay /* actually zap the local rows */ 166672dacd9aSBarry Smith /* 166772dacd9aSBarry Smith Zero the required rows. If the "diagonal block" of the matrix 1668a8c7a070SBarry Smith is square and the user wishes to set the diagonal we use separate 166972dacd9aSBarry Smith code so that MatSetValues() is not called for each diagonal allocating 167072dacd9aSBarry Smith new memory, thus calling lots of mallocs and slowing things down. 167172dacd9aSBarry Smith 167272dacd9aSBarry Smith */ 16739c957beeSSatish Balay /* must zero l->B before l->A because the (diag) case below may put values into l->B*/ 1674f4df32b1SMatthew Knepley ierr = MatZeroRows_SeqBAIJ(l->B,slen,lrows,0.0);CHKERRQ(ierr); 1675d0f46423SBarry Smith if ((diag != 0.0) && (l->A->rmap->N == l->A->cmap->N)) { 1676f4df32b1SMatthew Knepley ierr = MatZeroRows_SeqBAIJ(l->A,slen,lrows,diag);CHKERRQ(ierr); 1677f4df32b1SMatthew Knepley } else if (diag != 0.0) { 1678f4df32b1SMatthew Knepley ierr = MatZeroRows_SeqBAIJ(l->A,slen,lrows,0.0);CHKERRQ(ierr); 1679fa46199cSSatish Balay if (((Mat_SeqBAIJ*)l->A->data)->nonew) { 168029bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"MatZeroRows() on rectangular matrices cannot be used with the Mat options \n\ 1681512a5fc5SBarry Smith MAT_NEW_NONZERO_LOCATIONS,MAT_NEW_NONZERO_LOCATION_ERR,MAT_NEW_NONZERO_ALLOCATION_ERR"); 16826525c446SSatish Balay } 1683a07cd24cSSatish Balay for (i=0; i<slen; i++) { 1684a07cd24cSSatish Balay row = lrows[i] + rstart_bs; 1685f4df32b1SMatthew Knepley ierr = MatSetValues(A,1,&row,1,&row,&diag,INSERT_VALUES);CHKERRQ(ierr); 1686a07cd24cSSatish Balay } 1687a07cd24cSSatish Balay ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 1688a07cd24cSSatish Balay ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 16899c957beeSSatish Balay } else { 1690f4df32b1SMatthew Knepley ierr = MatZeroRows_SeqBAIJ(l->A,slen,lrows,0.0);CHKERRQ(ierr); 1691a07cd24cSSatish Balay } 16929c957beeSSatish Balay 1693606d414cSSatish Balay ierr = PetscFree(lrows);CHKERRQ(ierr); 1694a07cd24cSSatish Balay 16950ac07820SSatish Balay /* wait on sends */ 16960ac07820SSatish Balay if (nsends) { 169782502324SSatish Balay ierr = PetscMalloc(nsends*sizeof(MPI_Status),&send_status);CHKERRQ(ierr); 1698ca161407SBarry Smith ierr = MPI_Waitall(nsends,send_waits,send_status);CHKERRQ(ierr); 1699606d414cSSatish Balay ierr = PetscFree(send_status);CHKERRQ(ierr); 17000ac07820SSatish Balay } 1701606d414cSSatish Balay ierr = PetscFree(send_waits);CHKERRQ(ierr); 1702606d414cSSatish Balay ierr = PetscFree(svalues);CHKERRQ(ierr); 17030ac07820SSatish Balay 17043a40ed3dSBarry Smith PetscFunctionReturn(0); 17050ac07820SSatish Balay } 170672dacd9aSBarry Smith 17074a2ae208SSatish Balay #undef __FUNCT__ 17084a2ae208SSatish Balay #define __FUNCT__ "MatSetUnfactored_MPIBAIJ" 1709dfbe8321SBarry Smith PetscErrorCode MatSetUnfactored_MPIBAIJ(Mat A) 1710bb5a7306SBarry Smith { 1711bb5a7306SBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1712dfbe8321SBarry Smith PetscErrorCode ierr; 1713d64ed03dSBarry Smith 1714d64ed03dSBarry Smith PetscFunctionBegin; 1715bb5a7306SBarry Smith ierr = MatSetUnfactored(a->A);CHKERRQ(ierr); 17163a40ed3dSBarry Smith PetscFunctionReturn(0); 1717bb5a7306SBarry Smith } 1718bb5a7306SBarry Smith 17196849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIBAIJ(Mat,MatDuplicateOption,Mat *); 17200ac07820SSatish Balay 17214a2ae208SSatish Balay #undef __FUNCT__ 17224a2ae208SSatish Balay #define __FUNCT__ "MatEqual_MPIBAIJ" 1723dfbe8321SBarry Smith PetscErrorCode MatEqual_MPIBAIJ(Mat A,Mat B,PetscTruth *flag) 17247fc3c18eSBarry Smith { 17257fc3c18eSBarry Smith Mat_MPIBAIJ *matB = (Mat_MPIBAIJ*)B->data,*matA = (Mat_MPIBAIJ*)A->data; 17267fc3c18eSBarry Smith Mat a,b,c,d; 17277fc3c18eSBarry Smith PetscTruth flg; 1728dfbe8321SBarry Smith PetscErrorCode ierr; 17297fc3c18eSBarry Smith 17307fc3c18eSBarry Smith PetscFunctionBegin; 17317fc3c18eSBarry Smith a = matA->A; b = matA->B; 17327fc3c18eSBarry Smith c = matB->A; d = matB->B; 17337fc3c18eSBarry Smith 17347fc3c18eSBarry Smith ierr = MatEqual(a,c,&flg);CHKERRQ(ierr); 1735abc0a331SBarry Smith if (flg) { 17367fc3c18eSBarry Smith ierr = MatEqual(b,d,&flg);CHKERRQ(ierr); 17377fc3c18eSBarry Smith } 17387adad957SLisandro Dalcin ierr = MPI_Allreduce(&flg,flag,1,MPI_INT,MPI_LAND,((PetscObject)A)->comm);CHKERRQ(ierr); 17397fc3c18eSBarry Smith PetscFunctionReturn(0); 17407fc3c18eSBarry Smith } 17417fc3c18eSBarry Smith 17423c896bc6SHong Zhang #undef __FUNCT__ 17433c896bc6SHong Zhang #define __FUNCT__ "MatCopy_MPIBAIJ" 17443c896bc6SHong Zhang PetscErrorCode MatCopy_MPIBAIJ(Mat A,Mat B,MatStructure str) 17453c896bc6SHong Zhang { 17463c896bc6SHong Zhang PetscErrorCode ierr; 17473c896bc6SHong Zhang Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 17483c896bc6SHong Zhang Mat_MPIBAIJ *b = (Mat_MPIBAIJ *)B->data; 17493c896bc6SHong Zhang 17503c896bc6SHong Zhang PetscFunctionBegin; 17513c896bc6SHong Zhang /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */ 17523c896bc6SHong Zhang if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) { 17533c896bc6SHong Zhang ierr = MatCopy_Basic(A,B,str);CHKERRQ(ierr); 17543c896bc6SHong Zhang } else { 17553c896bc6SHong Zhang ierr = MatCopy(a->A,b->A,str);CHKERRQ(ierr); 17563c896bc6SHong Zhang ierr = MatCopy(a->B,b->B,str);CHKERRQ(ierr); 17573c896bc6SHong Zhang } 17583c896bc6SHong Zhang PetscFunctionReturn(0); 17593c896bc6SHong Zhang } 1760273d9f13SBarry Smith 17614a2ae208SSatish Balay #undef __FUNCT__ 17624a2ae208SSatish Balay #define __FUNCT__ "MatSetUpPreallocation_MPIBAIJ" 1763dfbe8321SBarry Smith PetscErrorCode MatSetUpPreallocation_MPIBAIJ(Mat A) 1764273d9f13SBarry Smith { 1765dfbe8321SBarry Smith PetscErrorCode ierr; 1766273d9f13SBarry Smith 1767273d9f13SBarry Smith PetscFunctionBegin; 1768db4efbfdSBarry Smith ierr = MatMPIBAIJSetPreallocation(A,-PetscMax(A->rmap->bs,1),PETSC_DEFAULT,0,PETSC_DEFAULT,0);CHKERRQ(ierr); 1769273d9f13SBarry Smith PetscFunctionReturn(0); 1770273d9f13SBarry Smith } 1771273d9f13SBarry Smith 17724fe895cdSHong Zhang #include "petscblaslapack.h" 17734fe895cdSHong Zhang #undef __FUNCT__ 17744fe895cdSHong Zhang #define __FUNCT__ "MatAXPY_MPIBAIJ" 17754fe895cdSHong Zhang PetscErrorCode MatAXPY_MPIBAIJ(Mat Y,PetscScalar a,Mat X,MatStructure str) 17764fe895cdSHong Zhang { 17774fe895cdSHong Zhang PetscErrorCode ierr; 17784fe895cdSHong Zhang Mat_MPIBAIJ *xx=(Mat_MPIBAIJ *)X->data,*yy=(Mat_MPIBAIJ *)Y->data; 17794fe895cdSHong Zhang PetscBLASInt bnz,one=1; 17804fe895cdSHong Zhang Mat_SeqBAIJ *x,*y; 17814fe895cdSHong Zhang 17824fe895cdSHong Zhang PetscFunctionBegin; 17834fe895cdSHong Zhang if (str == SAME_NONZERO_PATTERN) { 17844fe895cdSHong Zhang PetscScalar alpha = a; 17854fe895cdSHong Zhang x = (Mat_SeqBAIJ *)xx->A->data; 17864fe895cdSHong Zhang y = (Mat_SeqBAIJ *)yy->A->data; 17870805154bSBarry Smith bnz = PetscBLASIntCast(x->nz); 17884fe895cdSHong Zhang BLASaxpy_(&bnz,&alpha,x->a,&one,y->a,&one); 17894fe895cdSHong Zhang x = (Mat_SeqBAIJ *)xx->B->data; 17904fe895cdSHong Zhang y = (Mat_SeqBAIJ *)yy->B->data; 17910805154bSBarry Smith bnz = PetscBLASIntCast(x->nz); 17924fe895cdSHong Zhang BLASaxpy_(&bnz,&alpha,x->a,&one,y->a,&one); 17934fe895cdSHong Zhang } else { 17944fe895cdSHong Zhang ierr = MatAXPY_Basic(Y,a,X,str);CHKERRQ(ierr); 17954fe895cdSHong Zhang } 17964fe895cdSHong Zhang PetscFunctionReturn(0); 17974fe895cdSHong Zhang } 17984fe895cdSHong Zhang 179999cafbc1SBarry Smith #undef __FUNCT__ 180041c166b1SJed Brown #define __FUNCT__ "MatSetBlockSize_MPIBAIJ" 180141c166b1SJed Brown PetscErrorCode MatSetBlockSize_MPIBAIJ(Mat A,PetscInt bs) 180241c166b1SJed Brown { 180341c166b1SJed Brown Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1804*829b6ff0SJed Brown PetscInt rbs,cbs; 180541c166b1SJed Brown PetscErrorCode ierr; 180641c166b1SJed Brown 180741c166b1SJed Brown PetscFunctionBegin; 180841c166b1SJed Brown ierr = MatSetBlockSize(a->A,bs);CHKERRQ(ierr); 180941c166b1SJed Brown ierr = MatSetBlockSize(a->B,bs);CHKERRQ(ierr); 1810*829b6ff0SJed Brown ierr = PetscLayoutGetBlockSize(A->rmap,&rbs);CHKERRQ(ierr); 1811*829b6ff0SJed Brown ierr = PetscLayoutGetBlockSize(A->cmap,&cbs);CHKERRQ(ierr); 1812*829b6ff0SJed Brown if (rbs != bs) SETERRQ2(PETSC_ERR_ARG_SIZ,"Attempt to set block size %d with BAIJ %d",bs,rbs); 1813*829b6ff0SJed Brown if (cbs != bs) SETERRQ2(PETSC_ERR_ARG_SIZ,"Attempt to set block size %d with BAIJ %d",bs,cbs); 181441c166b1SJed Brown PetscFunctionReturn(0); 181541c166b1SJed Brown } 181641c166b1SJed Brown 181741c166b1SJed Brown #undef __FUNCT__ 181899cafbc1SBarry Smith #define __FUNCT__ "MatRealPart_MPIBAIJ" 181999cafbc1SBarry Smith PetscErrorCode MatRealPart_MPIBAIJ(Mat A) 182099cafbc1SBarry Smith { 182199cafbc1SBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 182299cafbc1SBarry Smith PetscErrorCode ierr; 182399cafbc1SBarry Smith 182499cafbc1SBarry Smith PetscFunctionBegin; 182599cafbc1SBarry Smith ierr = MatRealPart(a->A);CHKERRQ(ierr); 182699cafbc1SBarry Smith ierr = MatRealPart(a->B);CHKERRQ(ierr); 182799cafbc1SBarry Smith PetscFunctionReturn(0); 182899cafbc1SBarry Smith } 182999cafbc1SBarry Smith 183099cafbc1SBarry Smith #undef __FUNCT__ 183199cafbc1SBarry Smith #define __FUNCT__ "MatImaginaryPart_MPIBAIJ" 183299cafbc1SBarry Smith PetscErrorCode MatImaginaryPart_MPIBAIJ(Mat A) 183399cafbc1SBarry Smith { 183499cafbc1SBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 183599cafbc1SBarry Smith PetscErrorCode ierr; 183699cafbc1SBarry Smith 183799cafbc1SBarry Smith PetscFunctionBegin; 183899cafbc1SBarry Smith ierr = MatImaginaryPart(a->A);CHKERRQ(ierr); 183999cafbc1SBarry Smith ierr = MatImaginaryPart(a->B);CHKERRQ(ierr); 184099cafbc1SBarry Smith PetscFunctionReturn(0); 184199cafbc1SBarry Smith } 184299cafbc1SBarry Smith 184382094794SBarry Smith #undef __FUNCT__ 184482094794SBarry Smith #define __FUNCT__ "MatGetSubMatrix_MPIBAIJ" 18454aa3045dSJed Brown PetscErrorCode MatGetSubMatrix_MPIBAIJ(Mat mat,IS isrow,IS iscol,MatReuse call,Mat *newmat) 18464aa3045dSJed Brown { 18474aa3045dSJed Brown PetscErrorCode ierr; 18484aa3045dSJed Brown IS iscol_local; 18494aa3045dSJed Brown PetscInt csize; 18504aa3045dSJed Brown 18514aa3045dSJed Brown PetscFunctionBegin; 18524aa3045dSJed Brown ierr = ISGetLocalSize(iscol,&csize);CHKERRQ(ierr); 1853b79d0421SJed Brown if (call == MAT_REUSE_MATRIX) { 1854b79d0421SJed Brown ierr = PetscObjectQuery((PetscObject)*newmat,"ISAllGather",(PetscObject*)&iscol_local);CHKERRQ(ierr); 1855b79d0421SJed Brown if (!iscol_local) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Submatrix passed in was not used before, cannot reuse"); 1856b79d0421SJed Brown } else { 18574aa3045dSJed Brown ierr = ISAllGather(iscol,&iscol_local);CHKERRQ(ierr); 1858b79d0421SJed Brown } 18594aa3045dSJed Brown ierr = MatGetSubMatrix_MPIBAIJ_Private(mat,isrow,iscol_local,csize,call,newmat);CHKERRQ(ierr); 1860b79d0421SJed Brown if (call == MAT_INITIAL_MATRIX) { 1861b79d0421SJed Brown ierr = PetscObjectCompose((PetscObject)*newmat,"ISAllGather",(PetscObject)iscol_local);CHKERRQ(ierr); 18624aa3045dSJed Brown ierr = ISDestroy(iscol_local);CHKERRQ(ierr); 1863b79d0421SJed Brown } 18644aa3045dSJed Brown PetscFunctionReturn(0); 18654aa3045dSJed Brown } 18664aa3045dSJed Brown 18674aa3045dSJed Brown #undef __FUNCT__ 18684aa3045dSJed Brown #define __FUNCT__ "MatGetSubMatrix_MPIBAIJ" 186982094794SBarry Smith /* 187082094794SBarry Smith Not great since it makes two copies of the submatrix, first an SeqBAIJ 187182094794SBarry Smith in local and then by concatenating the local matrices the end result. 187282094794SBarry Smith Writing it directly would be much like MatGetSubMatrices_MPIBAIJ() 187382094794SBarry Smith */ 18744aa3045dSJed Brown PetscErrorCode MatGetSubMatrix_MPIBAIJ_Private(Mat mat,IS isrow,IS iscol,PetscInt csize,MatReuse call,Mat *newmat) 187582094794SBarry Smith { 187682094794SBarry Smith PetscErrorCode ierr; 187782094794SBarry Smith PetscMPIInt rank,size; 187882094794SBarry Smith PetscInt i,m,n,rstart,row,rend,nz,*cwork,j,bs; 187982094794SBarry Smith PetscInt *ii,*jj,nlocal,*dlens,*olens,dlen,olen,jend,mglobal; 188082094794SBarry Smith Mat *local,M,Mreuse; 188182094794SBarry Smith MatScalar *vwork,*aa; 188282094794SBarry Smith MPI_Comm comm = ((PetscObject)mat)->comm; 188382094794SBarry Smith Mat_SeqBAIJ *aij; 188482094794SBarry Smith 188582094794SBarry Smith 188682094794SBarry Smith PetscFunctionBegin; 188782094794SBarry Smith ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 188882094794SBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 188982094794SBarry Smith 189082094794SBarry Smith if (call == MAT_REUSE_MATRIX) { 189182094794SBarry Smith ierr = PetscObjectQuery((PetscObject)*newmat,"SubMatrix",(PetscObject *)&Mreuse);CHKERRQ(ierr); 189282094794SBarry Smith if (!Mreuse) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Submatrix passed in was not used before, cannot reuse"); 189382094794SBarry Smith local = &Mreuse; 189482094794SBarry Smith ierr = MatGetSubMatrices(mat,1,&isrow,&iscol,MAT_REUSE_MATRIX,&local);CHKERRQ(ierr); 189582094794SBarry Smith } else { 189682094794SBarry Smith ierr = MatGetSubMatrices(mat,1,&isrow,&iscol,MAT_INITIAL_MATRIX,&local);CHKERRQ(ierr); 189782094794SBarry Smith Mreuse = *local; 189882094794SBarry Smith ierr = PetscFree(local);CHKERRQ(ierr); 189982094794SBarry Smith } 190082094794SBarry Smith 190182094794SBarry Smith /* 190282094794SBarry Smith m - number of local rows 190382094794SBarry Smith n - number of columns (same on all processors) 190482094794SBarry Smith rstart - first row in new global matrix generated 190582094794SBarry Smith */ 190682094794SBarry Smith ierr = MatGetBlockSize(mat,&bs);CHKERRQ(ierr); 190782094794SBarry Smith ierr = MatGetSize(Mreuse,&m,&n);CHKERRQ(ierr); 190882094794SBarry Smith m = m/bs; 190982094794SBarry Smith n = n/bs; 191082094794SBarry Smith 191182094794SBarry Smith if (call == MAT_INITIAL_MATRIX) { 191282094794SBarry Smith aij = (Mat_SeqBAIJ*)(Mreuse)->data; 191382094794SBarry Smith ii = aij->i; 191482094794SBarry Smith jj = aij->j; 191582094794SBarry Smith 191682094794SBarry Smith /* 191782094794SBarry Smith Determine the number of non-zeros in the diagonal and off-diagonal 191882094794SBarry Smith portions of the matrix in order to do correct preallocation 191982094794SBarry Smith */ 192082094794SBarry Smith 192182094794SBarry Smith /* first get start and end of "diagonal" columns */ 192282094794SBarry Smith if (csize == PETSC_DECIDE) { 192382094794SBarry Smith ierr = ISGetSize(isrow,&mglobal);CHKERRQ(ierr); 192482094794SBarry Smith if (mglobal == n*bs) { /* square matrix */ 192582094794SBarry Smith nlocal = m; 192682094794SBarry Smith } else { 192782094794SBarry Smith nlocal = n/size + ((n % size) > rank); 192882094794SBarry Smith } 192982094794SBarry Smith } else { 193082094794SBarry Smith nlocal = csize/bs; 193182094794SBarry Smith } 193282094794SBarry Smith ierr = MPI_Scan(&nlocal,&rend,1,MPIU_INT,MPI_SUM,comm);CHKERRQ(ierr); 193382094794SBarry Smith rstart = rend - nlocal; 193482094794SBarry Smith if (rank == size - 1 && rend != n) { 193582094794SBarry Smith SETERRQ2(PETSC_ERR_ARG_SIZ,"Local column sizes %D do not add up to total number of columns %D",rend,n); 193682094794SBarry Smith } 193782094794SBarry Smith 193882094794SBarry Smith /* next, compute all the lengths */ 193982094794SBarry Smith ierr = PetscMalloc((2*m+1)*sizeof(PetscInt),&dlens);CHKERRQ(ierr); 194082094794SBarry Smith olens = dlens + m; 194182094794SBarry Smith for (i=0; i<m; i++) { 194282094794SBarry Smith jend = ii[i+1] - ii[i]; 194382094794SBarry Smith olen = 0; 194482094794SBarry Smith dlen = 0; 194582094794SBarry Smith for (j=0; j<jend; j++) { 194682094794SBarry Smith if (*jj < rstart || *jj >= rend) olen++; 194782094794SBarry Smith else dlen++; 194882094794SBarry Smith jj++; 194982094794SBarry Smith } 195082094794SBarry Smith olens[i] = olen; 195182094794SBarry Smith dlens[i] = dlen; 195282094794SBarry Smith } 195382094794SBarry Smith ierr = MatCreate(comm,&M);CHKERRQ(ierr); 195482094794SBarry Smith ierr = MatSetSizes(M,bs*m,bs*nlocal,PETSC_DECIDE,bs*n);CHKERRQ(ierr); 195582094794SBarry Smith ierr = MatSetType(M,((PetscObject)mat)->type_name);CHKERRQ(ierr); 195682094794SBarry Smith ierr = MatMPIBAIJSetPreallocation(M,bs,0,dlens,0,olens);CHKERRQ(ierr); 195782094794SBarry Smith ierr = PetscFree(dlens);CHKERRQ(ierr); 195882094794SBarry Smith } else { 195982094794SBarry Smith PetscInt ml,nl; 196082094794SBarry Smith 196182094794SBarry Smith M = *newmat; 196282094794SBarry Smith ierr = MatGetLocalSize(M,&ml,&nl);CHKERRQ(ierr); 196382094794SBarry Smith if (ml != m) SETERRQ(PETSC_ERR_ARG_SIZ,"Previous matrix must be same size/layout as request"); 196482094794SBarry Smith ierr = MatZeroEntries(M);CHKERRQ(ierr); 196582094794SBarry Smith /* 196682094794SBarry Smith The next two lines are needed so we may call MatSetValues_MPIAIJ() below directly, 196782094794SBarry Smith rather than the slower MatSetValues(). 196882094794SBarry Smith */ 196982094794SBarry Smith M->was_assembled = PETSC_TRUE; 197082094794SBarry Smith M->assembled = PETSC_FALSE; 197182094794SBarry Smith } 197282094794SBarry Smith ierr = MatSetOption(M,MAT_ROW_ORIENTED,PETSC_FALSE);CHKERRQ(ierr); 197382094794SBarry Smith ierr = MatGetOwnershipRange(M,&rstart,&rend);CHKERRQ(ierr); 197482094794SBarry Smith aij = (Mat_SeqBAIJ*)(Mreuse)->data; 197582094794SBarry Smith ii = aij->i; 197682094794SBarry Smith jj = aij->j; 197782094794SBarry Smith aa = aij->a; 197882094794SBarry Smith for (i=0; i<m; i++) { 197982094794SBarry Smith row = rstart/bs + i; 198082094794SBarry Smith nz = ii[i+1] - ii[i]; 198182094794SBarry Smith cwork = jj; jj += nz; 198282094794SBarry Smith vwork = aa; aa += nz; 198382094794SBarry Smith ierr = MatSetValuesBlocked_MPIBAIJ(M,1,&row,nz,cwork,vwork,INSERT_VALUES);CHKERRQ(ierr); 198482094794SBarry Smith } 198582094794SBarry Smith 198682094794SBarry Smith ierr = MatAssemblyBegin(M,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 198782094794SBarry Smith ierr = MatAssemblyEnd(M,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 198882094794SBarry Smith *newmat = M; 198982094794SBarry Smith 199082094794SBarry Smith /* save submatrix used in processor for next request */ 199182094794SBarry Smith if (call == MAT_INITIAL_MATRIX) { 199282094794SBarry Smith ierr = PetscObjectCompose((PetscObject)M,"SubMatrix",(PetscObject)Mreuse);CHKERRQ(ierr); 199382094794SBarry Smith ierr = PetscObjectDereference((PetscObject)Mreuse);CHKERRQ(ierr); 199482094794SBarry Smith } 199582094794SBarry Smith 199682094794SBarry Smith PetscFunctionReturn(0); 199782094794SBarry Smith } 199882094794SBarry Smith 199982094794SBarry Smith #undef __FUNCT__ 200082094794SBarry Smith #define __FUNCT__ "MatPermute_MPIBAIJ" 200182094794SBarry Smith PetscErrorCode MatPermute_MPIBAIJ(Mat A,IS rowp,IS colp,Mat *B) 200282094794SBarry Smith { 200382094794SBarry Smith MPI_Comm comm,pcomm; 200482094794SBarry Smith PetscInt first,local_size,nrows; 200582094794SBarry Smith const PetscInt *rows; 2006dbf0e21dSBarry Smith PetscMPIInt size; 200782094794SBarry Smith IS crowp,growp,irowp,lrowp,lcolp,icolp; 200882094794SBarry Smith PetscErrorCode ierr; 200982094794SBarry Smith 201082094794SBarry Smith PetscFunctionBegin; 201182094794SBarry Smith ierr = PetscObjectGetComm((PetscObject)A,&comm);CHKERRQ(ierr); 201282094794SBarry Smith /* make a collective version of 'rowp' */ 201382094794SBarry Smith ierr = PetscObjectGetComm((PetscObject)rowp,&pcomm);CHKERRQ(ierr); 201482094794SBarry Smith if (pcomm==comm) { 201582094794SBarry Smith crowp = rowp; 201682094794SBarry Smith } else { 201782094794SBarry Smith ierr = ISGetSize(rowp,&nrows);CHKERRQ(ierr); 201882094794SBarry Smith ierr = ISGetIndices(rowp,&rows);CHKERRQ(ierr); 201982094794SBarry Smith ierr = ISCreateGeneral(comm,nrows,rows,&crowp);CHKERRQ(ierr); 202082094794SBarry Smith ierr = ISRestoreIndices(rowp,&rows);CHKERRQ(ierr); 202182094794SBarry Smith } 202282094794SBarry Smith /* collect the global row permutation and invert it */ 202382094794SBarry Smith ierr = ISAllGather(crowp,&growp);CHKERRQ(ierr); 202482094794SBarry Smith ierr = ISSetPermutation(growp);CHKERRQ(ierr); 202582094794SBarry Smith if (pcomm!=comm) { 202682094794SBarry Smith ierr = ISDestroy(crowp);CHKERRQ(ierr); 202782094794SBarry Smith } 202882094794SBarry Smith ierr = ISInvertPermutation(growp,PETSC_DECIDE,&irowp);CHKERRQ(ierr); 202982094794SBarry Smith /* get the local target indices */ 203082094794SBarry Smith ierr = MatGetOwnershipRange(A,&first,PETSC_NULL);CHKERRQ(ierr); 203182094794SBarry Smith ierr = MatGetLocalSize(A,&local_size,PETSC_NULL);CHKERRQ(ierr); 203282094794SBarry Smith ierr = ISGetIndices(irowp,&rows);CHKERRQ(ierr); 203382094794SBarry Smith ierr = ISCreateGeneral(MPI_COMM_SELF,local_size,rows+first,&lrowp);CHKERRQ(ierr); 203482094794SBarry Smith ierr = ISRestoreIndices(irowp,&rows);CHKERRQ(ierr); 203582094794SBarry Smith ierr = ISDestroy(irowp);CHKERRQ(ierr); 203682094794SBarry Smith /* the column permutation is so much easier; 203782094794SBarry Smith make a local version of 'colp' and invert it */ 203882094794SBarry Smith ierr = PetscObjectGetComm((PetscObject)colp,&pcomm);CHKERRQ(ierr); 2039dbf0e21dSBarry Smith ierr = MPI_Comm_size(pcomm,&size);CHKERRQ(ierr); 2040dbf0e21dSBarry Smith if (size==1) { 204182094794SBarry Smith lcolp = colp; 204282094794SBarry Smith } else { 204382094794SBarry Smith ierr = ISGetSize(colp,&nrows);CHKERRQ(ierr); 204482094794SBarry Smith ierr = ISGetIndices(colp,&rows);CHKERRQ(ierr); 204582094794SBarry Smith ierr = ISCreateGeneral(MPI_COMM_SELF,nrows,rows,&lcolp);CHKERRQ(ierr); 204682094794SBarry Smith } 2047dbf0e21dSBarry Smith ierr = ISSetPermutation(lcolp);CHKERRQ(ierr); 204882094794SBarry Smith ierr = ISInvertPermutation(lcolp,PETSC_DECIDE,&icolp);CHKERRQ(ierr); 20494aa3045dSJed Brown ierr = ISSetPermutation(icolp);CHKERRQ(ierr); 2050dbf0e21dSBarry Smith if (size>1) { 205182094794SBarry Smith ierr = ISRestoreIndices(colp,&rows);CHKERRQ(ierr); 205282094794SBarry Smith ierr = ISDestroy(lcolp);CHKERRQ(ierr); 205382094794SBarry Smith } 205482094794SBarry Smith /* now we just get the submatrix */ 20554aa3045dSJed Brown ierr = MatGetSubMatrix_MPIBAIJ_Private(A,lrowp,icolp,local_size,MAT_INITIAL_MATRIX,B);CHKERRQ(ierr); 205682094794SBarry Smith /* clean up */ 205782094794SBarry Smith ierr = ISDestroy(lrowp);CHKERRQ(ierr); 205882094794SBarry Smith ierr = ISDestroy(icolp);CHKERRQ(ierr); 205982094794SBarry Smith PetscFunctionReturn(0); 206082094794SBarry Smith } 206182094794SBarry Smith 20628c7482ecSBarry Smith #undef __FUNCT__ 20638c7482ecSBarry Smith #define __FUNCT__ "MatGetGhosts_MPIBAIJ" 20648c7482ecSBarry Smith PetscErrorCode PETSCMAT_DLLEXPORT MatGetGhosts_MPIBAIJ(Mat mat,PetscInt *nghosts,const PetscInt *ghosts[]) 20658c7482ecSBarry Smith { 20668c7482ecSBarry Smith Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*) mat->data; 20678c7482ecSBarry Smith Mat_SeqBAIJ *B = (Mat_SeqBAIJ*)baij->B->data; 20688c7482ecSBarry Smith 20698c7482ecSBarry Smith PetscFunctionBegin; 20708c7482ecSBarry Smith if (nghosts) { *nghosts = B->nbs;} 20718c7482ecSBarry Smith if (ghosts) {*ghosts = baij->garray;} 20728c7482ecSBarry Smith PetscFunctionReturn(0); 20738c7482ecSBarry Smith } 20748c7482ecSBarry Smith 2075f6d58c54SBarry Smith EXTERN PetscErrorCode CreateColmap_MPIBAIJ_Private(Mat); 2076f6d58c54SBarry Smith 2077f6d58c54SBarry Smith #undef __FUNCT__ 2078f6d58c54SBarry Smith #define __FUNCT__ "MatFDColoringCreate_MPIBAIJ" 2079f6d58c54SBarry Smith /* 2080f6d58c54SBarry Smith This routine is almost identical to MatFDColoringCreate_MPIBAIJ()! 2081f6d58c54SBarry Smith */ 2082f6d58c54SBarry Smith PetscErrorCode MatFDColoringCreate_MPIBAIJ(Mat mat,ISColoring iscoloring,MatFDColoring c) 2083f6d58c54SBarry Smith { 2084f6d58c54SBarry Smith Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 2085f6d58c54SBarry Smith PetscErrorCode ierr; 2086f6d58c54SBarry Smith PetscMPIInt size,*ncolsonproc,*disp,nn; 2087f6d58c54SBarry Smith PetscInt bs,i,n,nrows,j,k,m,*rows = 0,*A_ci,*A_cj,ncols,col; 2088f6d58c54SBarry Smith const PetscInt *is; 2089f6d58c54SBarry Smith PetscInt nis = iscoloring->n,nctot,*cols,*B_ci,*B_cj; 2090f6d58c54SBarry Smith PetscInt *rowhit,M,cstart,cend,colb; 2091f6d58c54SBarry Smith PetscInt *columnsforrow,l; 2092f6d58c54SBarry Smith IS *isa; 2093f6d58c54SBarry Smith PetscTruth done,flg; 2094f6d58c54SBarry Smith ISLocalToGlobalMapping map = mat->bmapping; 2095f6d58c54SBarry Smith PetscInt *ltog = (map ? map->indices : (PetscInt*) PETSC_NULL) ,ctype=c->ctype; 2096f6d58c54SBarry Smith 2097f6d58c54SBarry Smith PetscFunctionBegin; 2098f6d58c54SBarry Smith if (!mat->assembled) { 2099f6d58c54SBarry Smith SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Matrix must be assembled first; MatAssemblyBegin/End();"); 2100f6d58c54SBarry Smith } 2101f6d58c54SBarry Smith if (ctype == IS_COLORING_GHOSTED && !map) SETERRQ(PETSC_ERR_ARG_INCOMP,"When using ghosted differencing matrix must have local to global mapping provided with MatSetLocalToGlobalMappingBlock"); 2102f6d58c54SBarry Smith 2103f6d58c54SBarry Smith ierr = ISColoringGetIS(iscoloring,PETSC_IGNORE,&isa);CHKERRQ(ierr); 2104f6d58c54SBarry Smith 2105f6d58c54SBarry Smith ierr = MatGetBlockSize(mat,&bs);CHKERRQ(ierr); 2106f6d58c54SBarry Smith M = mat->rmap->n/bs; 2107f6d58c54SBarry Smith cstart = mat->cmap->rstart/bs; 2108f6d58c54SBarry Smith cend = mat->cmap->rend/bs; 2109f6d58c54SBarry Smith c->M = mat->rmap->N/bs; /* set the global rows and columns and local rows */ 2110f6d58c54SBarry Smith c->N = mat->cmap->N/bs; 2111f6d58c54SBarry Smith c->m = mat->rmap->n/bs; 2112f6d58c54SBarry Smith c->rstart = mat->rmap->rstart/bs; 2113f6d58c54SBarry Smith 2114f6d58c54SBarry Smith c->ncolors = nis; 2115f6d58c54SBarry Smith ierr = PetscMalloc(nis*sizeof(PetscInt),&c->ncolumns);CHKERRQ(ierr); 2116f6d58c54SBarry Smith ierr = PetscMalloc(nis*sizeof(PetscInt*),&c->columns);CHKERRQ(ierr); 2117f6d58c54SBarry Smith ierr = PetscMalloc(nis*sizeof(PetscInt),&c->nrows);CHKERRQ(ierr); 2118f6d58c54SBarry Smith ierr = PetscMalloc(nis*sizeof(PetscInt*),&c->rows);CHKERRQ(ierr); 2119f6d58c54SBarry Smith ierr = PetscMalloc(nis*sizeof(PetscInt*),&c->columnsforrow);CHKERRQ(ierr); 2120f6d58c54SBarry Smith ierr = PetscLogObjectMemory(c,5*nis*sizeof(PetscInt));CHKERRQ(ierr); 2121f6d58c54SBarry Smith 2122f6d58c54SBarry Smith /* Allow access to data structures of local part of matrix */ 2123f6d58c54SBarry Smith if (!baij->colmap) { 2124f6d58c54SBarry Smith ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 2125f6d58c54SBarry Smith } 2126f6d58c54SBarry Smith ierr = MatGetColumnIJ(baij->A,0,PETSC_FALSE,PETSC_FALSE,&ncols,&A_ci,&A_cj,&done);CHKERRQ(ierr); 2127f6d58c54SBarry Smith ierr = MatGetColumnIJ(baij->B,0,PETSC_FALSE,PETSC_FALSE,&ncols,&B_ci,&B_cj,&done);CHKERRQ(ierr); 2128f6d58c54SBarry Smith 2129f6d58c54SBarry Smith ierr = PetscMalloc((M+1)*sizeof(PetscInt),&rowhit);CHKERRQ(ierr); 2130f6d58c54SBarry Smith ierr = PetscMalloc((M+1)*sizeof(PetscInt),&columnsforrow);CHKERRQ(ierr); 2131f6d58c54SBarry Smith 2132f6d58c54SBarry Smith for (i=0; i<nis; i++) { 2133f6d58c54SBarry Smith ierr = ISGetLocalSize(isa[i],&n);CHKERRQ(ierr); 2134f6d58c54SBarry Smith ierr = ISGetIndices(isa[i],&is);CHKERRQ(ierr); 2135f6d58c54SBarry Smith c->ncolumns[i] = n; 2136f6d58c54SBarry Smith if (n) { 2137f6d58c54SBarry Smith ierr = PetscMalloc(n*sizeof(PetscInt),&c->columns[i]);CHKERRQ(ierr); 2138f6d58c54SBarry Smith ierr = PetscLogObjectMemory(c,n*sizeof(PetscInt));CHKERRQ(ierr); 2139f6d58c54SBarry Smith ierr = PetscMemcpy(c->columns[i],is,n*sizeof(PetscInt));CHKERRQ(ierr); 2140f6d58c54SBarry Smith } else { 2141f6d58c54SBarry Smith c->columns[i] = 0; 2142f6d58c54SBarry Smith } 2143f6d58c54SBarry Smith 2144f6d58c54SBarry Smith if (ctype == IS_COLORING_GLOBAL){ 2145f6d58c54SBarry Smith /* Determine the total (parallel) number of columns of this color */ 2146f6d58c54SBarry Smith ierr = MPI_Comm_size(((PetscObject)mat)->comm,&size);CHKERRQ(ierr); 2147f6d58c54SBarry Smith ierr = PetscMalloc(2*size*sizeof(PetscInt*),&ncolsonproc);CHKERRQ(ierr); 2148f6d58c54SBarry Smith disp = ncolsonproc + size; 2149f6d58c54SBarry Smith 2150f6d58c54SBarry Smith nn = PetscMPIIntCast(n); 2151f6d58c54SBarry Smith ierr = MPI_Allgather(&nn,1,MPI_INT,ncolsonproc,1,MPI_INT,((PetscObject)mat)->comm);CHKERRQ(ierr); 2152f6d58c54SBarry Smith nctot = 0; for (j=0; j<size; j++) {nctot += ncolsonproc[j];} 2153f6d58c54SBarry Smith if (!nctot) { 2154f6d58c54SBarry Smith ierr = PetscInfo(mat,"Coloring of matrix has some unneeded colors with no corresponding rows\n");CHKERRQ(ierr); 2155f6d58c54SBarry Smith } 2156f6d58c54SBarry Smith 2157f6d58c54SBarry Smith disp[0] = 0; 2158f6d58c54SBarry Smith for (j=1; j<size; j++) { 2159f6d58c54SBarry Smith disp[j] = disp[j-1] + ncolsonproc[j-1]; 2160f6d58c54SBarry Smith } 2161f6d58c54SBarry Smith 2162f6d58c54SBarry Smith /* Get complete list of columns for color on each processor */ 2163f6d58c54SBarry Smith ierr = PetscMalloc((nctot+1)*sizeof(PetscInt),&cols);CHKERRQ(ierr); 2164f6d58c54SBarry Smith ierr = MPI_Allgatherv((void*)is,n,MPIU_INT,cols,ncolsonproc,disp,MPIU_INT,((PetscObject)mat)->comm);CHKERRQ(ierr); 2165f6d58c54SBarry Smith ierr = PetscFree(ncolsonproc);CHKERRQ(ierr); 2166f6d58c54SBarry Smith } else if (ctype == IS_COLORING_GHOSTED){ 2167f6d58c54SBarry Smith /* Determine local number of columns of this color on this process, including ghost points */ 2168f6d58c54SBarry Smith nctot = n; 2169f6d58c54SBarry Smith ierr = PetscMalloc((nctot+1)*sizeof(PetscInt),&cols);CHKERRQ(ierr); 2170f6d58c54SBarry Smith ierr = PetscMemcpy(cols,is,n*sizeof(PetscInt));CHKERRQ(ierr); 2171f6d58c54SBarry Smith } else { 2172f6d58c54SBarry Smith SETERRQ(PETSC_ERR_SUP,"Not provided for this MatFDColoring type"); 2173f6d58c54SBarry Smith } 2174f6d58c54SBarry Smith 2175f6d58c54SBarry Smith /* 2176f6d58c54SBarry Smith Mark all rows affect by these columns 2177f6d58c54SBarry Smith */ 2178f6d58c54SBarry Smith /* Temporary option to allow for debugging/testing */ 2179f6d58c54SBarry Smith flg = PETSC_FALSE; 2180f6d58c54SBarry Smith ierr = PetscOptionsGetTruth(PETSC_NULL,"-matfdcoloring_slow",&flg,PETSC_NULL);CHKERRQ(ierr); 2181f6d58c54SBarry Smith if (!flg) {/*-----------------------------------------------------------------------------*/ 2182f6d58c54SBarry Smith /* crude, fast version */ 2183f6d58c54SBarry Smith ierr = PetscMemzero(rowhit,M*sizeof(PetscInt));CHKERRQ(ierr); 2184f6d58c54SBarry Smith /* loop over columns*/ 2185f6d58c54SBarry Smith for (j=0; j<nctot; j++) { 2186f6d58c54SBarry Smith if (ctype == IS_COLORING_GHOSTED) { 2187f6d58c54SBarry Smith col = ltog[cols[j]]; 2188f6d58c54SBarry Smith } else { 2189f6d58c54SBarry Smith col = cols[j]; 2190f6d58c54SBarry Smith } 2191f6d58c54SBarry Smith if (col >= cstart && col < cend) { 2192f6d58c54SBarry Smith /* column is in diagonal block of matrix */ 2193f6d58c54SBarry Smith rows = A_cj + A_ci[col-cstart]; 2194f6d58c54SBarry Smith m = A_ci[col-cstart+1] - A_ci[col-cstart]; 2195f6d58c54SBarry Smith } else { 2196f6d58c54SBarry Smith #if defined (PETSC_USE_CTABLE) 2197f6d58c54SBarry Smith ierr = PetscTableFind(baij->colmap,col+1,&colb);CHKERRQ(ierr) 2198f6d58c54SBarry Smith colb --; 2199f6d58c54SBarry Smith #else 2200f6d58c54SBarry Smith colb = baij->colmap[col] - 1; 2201f6d58c54SBarry Smith #endif 2202f6d58c54SBarry Smith if (colb == -1) { 2203f6d58c54SBarry Smith m = 0; 2204f6d58c54SBarry Smith } else { 2205f6d58c54SBarry Smith colb = colb/bs; 2206f6d58c54SBarry Smith rows = B_cj + B_ci[colb]; 2207f6d58c54SBarry Smith m = B_ci[colb+1] - B_ci[colb]; 2208f6d58c54SBarry Smith } 2209f6d58c54SBarry Smith } 2210f6d58c54SBarry Smith /* loop over columns marking them in rowhit */ 2211f6d58c54SBarry Smith for (k=0; k<m; k++) { 2212f6d58c54SBarry Smith rowhit[*rows++] = col + 1; 2213f6d58c54SBarry Smith } 2214f6d58c54SBarry Smith } 2215f6d58c54SBarry Smith 2216f6d58c54SBarry Smith /* count the number of hits */ 2217f6d58c54SBarry Smith nrows = 0; 2218f6d58c54SBarry Smith for (j=0; j<M; j++) { 2219f6d58c54SBarry Smith if (rowhit[j]) nrows++; 2220f6d58c54SBarry Smith } 2221f6d58c54SBarry Smith c->nrows[i] = nrows; 2222f6d58c54SBarry Smith ierr = PetscMalloc((nrows+1)*sizeof(PetscInt),&c->rows[i]);CHKERRQ(ierr); 2223f6d58c54SBarry Smith ierr = PetscMalloc((nrows+1)*sizeof(PetscInt),&c->columnsforrow[i]);CHKERRQ(ierr); 2224f6d58c54SBarry Smith ierr = PetscLogObjectMemory(c,2*(nrows+1)*sizeof(PetscInt));CHKERRQ(ierr); 2225f6d58c54SBarry Smith nrows = 0; 2226f6d58c54SBarry Smith for (j=0; j<M; j++) { 2227f6d58c54SBarry Smith if (rowhit[j]) { 2228f6d58c54SBarry Smith c->rows[i][nrows] = j; 2229f6d58c54SBarry Smith c->columnsforrow[i][nrows] = rowhit[j] - 1; 2230f6d58c54SBarry Smith nrows++; 2231f6d58c54SBarry Smith } 2232f6d58c54SBarry Smith } 2233f6d58c54SBarry Smith } else {/*-------------------------------------------------------------------------------*/ 2234f6d58c54SBarry Smith /* slow version, using rowhit as a linked list */ 2235f6d58c54SBarry Smith PetscInt currentcol,fm,mfm; 2236f6d58c54SBarry Smith rowhit[M] = M; 2237f6d58c54SBarry Smith nrows = 0; 2238f6d58c54SBarry Smith /* loop over columns*/ 2239f6d58c54SBarry Smith for (j=0; j<nctot; j++) { 2240f6d58c54SBarry Smith if (ctype == IS_COLORING_GHOSTED) { 2241f6d58c54SBarry Smith col = ltog[cols[j]]; 2242f6d58c54SBarry Smith } else { 2243f6d58c54SBarry Smith col = cols[j]; 2244f6d58c54SBarry Smith } 2245f6d58c54SBarry Smith if (col >= cstart && col < cend) { 2246f6d58c54SBarry Smith /* column is in diagonal block of matrix */ 2247f6d58c54SBarry Smith rows = A_cj + A_ci[col-cstart]; 2248f6d58c54SBarry Smith m = A_ci[col-cstart+1] - A_ci[col-cstart]; 2249f6d58c54SBarry Smith } else { 2250f6d58c54SBarry Smith #if defined (PETSC_USE_CTABLE) 2251f6d58c54SBarry Smith ierr = PetscTableFind(baij->colmap,col+1,&colb);CHKERRQ(ierr); 2252f6d58c54SBarry Smith colb --; 2253f6d58c54SBarry Smith #else 2254f6d58c54SBarry Smith colb = baij->colmap[col] - 1; 2255f6d58c54SBarry Smith #endif 2256f6d58c54SBarry Smith if (colb == -1) { 2257f6d58c54SBarry Smith m = 0; 2258f6d58c54SBarry Smith } else { 2259f6d58c54SBarry Smith colb = colb/bs; 2260f6d58c54SBarry Smith rows = B_cj + B_ci[colb]; 2261f6d58c54SBarry Smith m = B_ci[colb+1] - B_ci[colb]; 2262f6d58c54SBarry Smith } 2263f6d58c54SBarry Smith } 2264f6d58c54SBarry Smith 2265f6d58c54SBarry Smith /* loop over columns marking them in rowhit */ 2266f6d58c54SBarry Smith fm = M; /* fm points to first entry in linked list */ 2267f6d58c54SBarry Smith for (k=0; k<m; k++) { 2268f6d58c54SBarry Smith currentcol = *rows++; 2269f6d58c54SBarry Smith /* is it already in the list? */ 2270f6d58c54SBarry Smith do { 2271f6d58c54SBarry Smith mfm = fm; 2272f6d58c54SBarry Smith fm = rowhit[fm]; 2273f6d58c54SBarry Smith } while (fm < currentcol); 2274f6d58c54SBarry Smith /* not in list so add it */ 2275f6d58c54SBarry Smith if (fm != currentcol) { 2276f6d58c54SBarry Smith nrows++; 2277f6d58c54SBarry Smith columnsforrow[currentcol] = col; 2278f6d58c54SBarry Smith /* next three lines insert new entry into linked list */ 2279f6d58c54SBarry Smith rowhit[mfm] = currentcol; 2280f6d58c54SBarry Smith rowhit[currentcol] = fm; 2281f6d58c54SBarry Smith fm = currentcol; 2282f6d58c54SBarry Smith /* fm points to present position in list since we know the columns are sorted */ 2283f6d58c54SBarry Smith } else { 2284f6d58c54SBarry Smith SETERRQ(PETSC_ERR_PLIB,"Invalid coloring of matrix detected"); 2285f6d58c54SBarry Smith } 2286f6d58c54SBarry Smith } 2287f6d58c54SBarry Smith } 2288f6d58c54SBarry Smith c->nrows[i] = nrows; 2289f6d58c54SBarry Smith ierr = PetscMalloc((nrows+1)*sizeof(PetscInt),&c->rows[i]);CHKERRQ(ierr); 2290f6d58c54SBarry Smith ierr = PetscMalloc((nrows+1)*sizeof(PetscInt),&c->columnsforrow[i]);CHKERRQ(ierr); 2291f6d58c54SBarry Smith ierr = PetscLogObjectMemory(c,(nrows+1)*sizeof(PetscInt));CHKERRQ(ierr); 2292f6d58c54SBarry Smith /* now store the linked list of rows into c->rows[i] */ 2293f6d58c54SBarry Smith nrows = 0; 2294f6d58c54SBarry Smith fm = rowhit[M]; 2295f6d58c54SBarry Smith do { 2296f6d58c54SBarry Smith c->rows[i][nrows] = fm; 2297f6d58c54SBarry Smith c->columnsforrow[i][nrows++] = columnsforrow[fm]; 2298f6d58c54SBarry Smith fm = rowhit[fm]; 2299f6d58c54SBarry Smith } while (fm < M); 2300f6d58c54SBarry Smith } /* ---------------------------------------------------------------------------------------*/ 2301f6d58c54SBarry Smith ierr = PetscFree(cols);CHKERRQ(ierr); 2302f6d58c54SBarry Smith } 2303f6d58c54SBarry Smith 2304f6d58c54SBarry Smith /* Optimize by adding the vscale, and scaleforrow[][] fields */ 2305f6d58c54SBarry Smith /* 2306f6d58c54SBarry Smith vscale will contain the "diagonal" on processor scalings followed by the off processor 2307f6d58c54SBarry Smith */ 2308f6d58c54SBarry Smith if (ctype == IS_COLORING_GLOBAL) { 2309f6d58c54SBarry Smith PetscInt *garray; 2310f6d58c54SBarry Smith ierr = PetscMalloc(baij->B->cmap->n*sizeof(PetscInt),&garray);CHKERRQ(ierr); 2311f6d58c54SBarry Smith for (i=0; i<baij->B->cmap->n/bs; i++) { 2312f6d58c54SBarry Smith for (j=0; j<bs; j++) { 2313f6d58c54SBarry Smith garray[i*bs+j] = bs*baij->garray[i]+j; 2314f6d58c54SBarry Smith } 2315f6d58c54SBarry Smith } 2316f6d58c54SBarry Smith ierr = VecCreateGhost(((PetscObject)mat)->comm,baij->A->rmap->n,PETSC_DETERMINE,baij->B->cmap->n,garray,&c->vscale);CHKERRQ(ierr); 2317f6d58c54SBarry Smith ierr = PetscFree(garray);CHKERRQ(ierr); 2318f6d58c54SBarry Smith CHKMEMQ; 2319f6d58c54SBarry Smith ierr = PetscMalloc(c->ncolors*sizeof(PetscInt*),&c->vscaleforrow);CHKERRQ(ierr); 2320f6d58c54SBarry Smith for (k=0; k<c->ncolors; k++) { 2321f6d58c54SBarry Smith ierr = PetscMalloc((c->nrows[k]+1)*sizeof(PetscInt),&c->vscaleforrow[k]);CHKERRQ(ierr); 2322f6d58c54SBarry Smith for (l=0; l<c->nrows[k]; l++) { 2323f6d58c54SBarry Smith col = c->columnsforrow[k][l]; 2324f6d58c54SBarry Smith if (col >= cstart && col < cend) { 2325f6d58c54SBarry Smith /* column is in diagonal block of matrix */ 2326f6d58c54SBarry Smith colb = col - cstart; 2327f6d58c54SBarry Smith } else { 2328f6d58c54SBarry Smith /* column is in "off-processor" part */ 2329f6d58c54SBarry Smith #if defined (PETSC_USE_CTABLE) 2330f6d58c54SBarry Smith ierr = PetscTableFind(baij->colmap,col+1,&colb);CHKERRQ(ierr); 2331f6d58c54SBarry Smith colb --; 2332f6d58c54SBarry Smith #else 2333f6d58c54SBarry Smith colb = baij->colmap[col] - 1; 2334f6d58c54SBarry Smith #endif 2335f6d58c54SBarry Smith colb = colb/bs; 2336f6d58c54SBarry Smith colb += cend - cstart; 2337f6d58c54SBarry Smith } 2338f6d58c54SBarry Smith c->vscaleforrow[k][l] = colb; 2339f6d58c54SBarry Smith } 2340f6d58c54SBarry Smith } 2341f6d58c54SBarry Smith } else if (ctype == IS_COLORING_GHOSTED) { 2342f6d58c54SBarry Smith /* Get gtol mapping */ 2343f6d58c54SBarry Smith PetscInt N = mat->cmap->N, *gtol; 2344f6d58c54SBarry Smith ierr = PetscMalloc((N+1)*sizeof(PetscInt),>ol);CHKERRQ(ierr); 2345f6d58c54SBarry Smith for (i=0; i<N; i++) gtol[i] = -1; 2346f6d58c54SBarry Smith for (i=0; i<map->n; i++) gtol[ltog[i]] = i; 2347f6d58c54SBarry Smith 2348f6d58c54SBarry Smith c->vscale = 0; /* will be created in MatFDColoringApply() */ 2349f6d58c54SBarry Smith ierr = PetscMalloc(c->ncolors*sizeof(PetscInt*),&c->vscaleforrow);CHKERRQ(ierr); 2350f6d58c54SBarry Smith for (k=0; k<c->ncolors; k++) { 2351f6d58c54SBarry Smith ierr = PetscMalloc((c->nrows[k]+1)*sizeof(PetscInt),&c->vscaleforrow[k]);CHKERRQ(ierr); 2352f6d58c54SBarry Smith for (l=0; l<c->nrows[k]; l++) { 2353f6d58c54SBarry Smith col = c->columnsforrow[k][l]; /* global column index */ 2354f6d58c54SBarry Smith c->vscaleforrow[k][l] = gtol[col]; /* local column index */ 2355f6d58c54SBarry Smith } 2356f6d58c54SBarry Smith } 2357f6d58c54SBarry Smith ierr = PetscFree(gtol);CHKERRQ(ierr); 2358f6d58c54SBarry Smith } 2359f6d58c54SBarry Smith ierr = ISColoringRestoreIS(iscoloring,&isa);CHKERRQ(ierr); 2360f6d58c54SBarry Smith 2361f6d58c54SBarry Smith ierr = PetscFree(rowhit);CHKERRQ(ierr); 2362f6d58c54SBarry Smith ierr = PetscFree(columnsforrow);CHKERRQ(ierr); 2363f6d58c54SBarry Smith ierr = MatRestoreColumnIJ(baij->A,0,PETSC_FALSE,PETSC_FALSE,&ncols,&A_ci,&A_cj,&done);CHKERRQ(ierr); 2364f6d58c54SBarry Smith ierr = MatRestoreColumnIJ(baij->B,0,PETSC_FALSE,PETSC_FALSE,&ncols,&B_ci,&B_cj,&done);CHKERRQ(ierr); 2365f6d58c54SBarry Smith CHKMEMQ; 2366f6d58c54SBarry Smith PetscFunctionReturn(0); 2367f6d58c54SBarry Smith } 2368f6d58c54SBarry Smith 2369f6d58c54SBarry Smith #undef __FUNCT__ 2370f6d58c54SBarry Smith #define __FUNCT__ "MatGetSeqNonzerostructure_MPIBAIJ" 2371f6d58c54SBarry Smith PetscErrorCode MatGetSeqNonzerostructure_MPIBAIJ(Mat A,Mat *newmat) 2372f6d58c54SBarry Smith { 2373f6d58c54SBarry Smith Mat B; 2374f6d58c54SBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 2375f6d58c54SBarry Smith Mat_SeqBAIJ *ad = (Mat_SeqBAIJ*)a->A->data,*bd = (Mat_SeqBAIJ*)a->B->data; 2376f6d58c54SBarry Smith Mat_SeqAIJ *b; 2377f6d58c54SBarry Smith PetscErrorCode ierr; 2378f6d58c54SBarry Smith PetscMPIInt size,rank,*recvcounts = 0,*displs = 0; 2379f6d58c54SBarry Smith PetscInt sendcount,i,*rstarts = A->rmap->range,n,cnt,j,bs = A->rmap->bs; 2380f6d58c54SBarry Smith PetscInt m,*garray = a->garray,*lens,*jsendbuf,*a_jsendbuf,*b_jsendbuf; 2381f6d58c54SBarry Smith 2382f6d58c54SBarry Smith PetscFunctionBegin; 2383f6d58c54SBarry Smith ierr = MPI_Comm_size(((PetscObject)A)->comm,&size);CHKERRQ(ierr); 2384f6d58c54SBarry Smith ierr = MPI_Comm_rank(((PetscObject)A)->comm,&rank);CHKERRQ(ierr); 2385f6d58c54SBarry Smith 2386f6d58c54SBarry Smith /* ---------------------------------------------------------------- 2387f6d58c54SBarry Smith Tell every processor the number of nonzeros per row 2388f6d58c54SBarry Smith */ 2389f6d58c54SBarry Smith ierr = PetscMalloc((A->rmap->N/bs)*sizeof(PetscInt),&lens);CHKERRQ(ierr); 2390f6d58c54SBarry Smith for (i=A->rmap->rstart/bs; i<A->rmap->rend/bs; i++) { 2391f6d58c54SBarry Smith lens[i] = ad->i[i-A->rmap->rstart/bs+1] - ad->i[i-A->rmap->rstart/bs] + bd->i[i-A->rmap->rstart/bs+1] - bd->i[i-A->rmap->rstart/bs]; 2392f6d58c54SBarry Smith } 2393f6d58c54SBarry Smith sendcount = A->rmap->rend/bs - A->rmap->rstart/bs; 2394f6d58c54SBarry Smith ierr = PetscMalloc(2*size*sizeof(PetscMPIInt),&recvcounts);CHKERRQ(ierr); 2395f6d58c54SBarry Smith displs = recvcounts + size; 2396f6d58c54SBarry Smith for (i=0; i<size; i++) { 2397f6d58c54SBarry Smith recvcounts[i] = A->rmap->range[i+1]/bs - A->rmap->range[i]/bs; 2398f6d58c54SBarry Smith displs[i] = A->rmap->range[i]/bs; 2399f6d58c54SBarry Smith } 2400f6d58c54SBarry Smith #if defined(PETSC_HAVE_MPI_IN_PLACE) 2401f6d58c54SBarry Smith ierr = MPI_Allgatherv(MPI_IN_PLACE,0,MPI_DATATYPE_NULL,lens,recvcounts,displs,MPIU_INT,((PetscObject)A)->comm);CHKERRQ(ierr); 2402f6d58c54SBarry Smith #else 2403f6d58c54SBarry Smith ierr = MPI_Allgatherv(lens+A->rmap->rstart/bs,sendcount,MPIU_INT,lens,recvcounts,displs,MPIU_INT,((PetscObject)A)->comm);CHKERRQ(ierr); 2404f6d58c54SBarry Smith #endif 2405f6d58c54SBarry Smith /* --------------------------------------------------------------- 2406f6d58c54SBarry Smith Create the sequential matrix of the same type as the local block diagonal 2407f6d58c54SBarry Smith */ 2408f6d58c54SBarry Smith ierr = MatCreate(PETSC_COMM_SELF,&B);CHKERRQ(ierr); 2409f6d58c54SBarry Smith ierr = MatSetSizes(B,A->rmap->N/bs,A->cmap->N/bs,PETSC_DETERMINE,PETSC_DETERMINE);CHKERRQ(ierr); 2410f6d58c54SBarry Smith ierr = MatSetType(B,MATSEQAIJ);CHKERRQ(ierr); 2411f6d58c54SBarry Smith ierr = MatSeqAIJSetPreallocation(B,0,lens);CHKERRQ(ierr); 2412f6d58c54SBarry Smith b = (Mat_SeqAIJ *)B->data; 2413f6d58c54SBarry Smith 2414f6d58c54SBarry Smith /*-------------------------------------------------------------------- 2415f6d58c54SBarry Smith Copy my part of matrix column indices over 2416f6d58c54SBarry Smith */ 2417f6d58c54SBarry Smith sendcount = ad->nz + bd->nz; 2418f6d58c54SBarry Smith jsendbuf = b->j + b->i[rstarts[rank]/bs]; 2419f6d58c54SBarry Smith a_jsendbuf = ad->j; 2420f6d58c54SBarry Smith b_jsendbuf = bd->j; 2421f6d58c54SBarry Smith n = A->rmap->rend/bs - A->rmap->rstart/bs; 2422f6d58c54SBarry Smith cnt = 0; 2423f6d58c54SBarry Smith for (i=0; i<n; i++) { 2424f6d58c54SBarry Smith 2425f6d58c54SBarry Smith /* put in lower diagonal portion */ 2426f6d58c54SBarry Smith m = bd->i[i+1] - bd->i[i]; 2427f6d58c54SBarry Smith while (m > 0) { 2428f6d58c54SBarry Smith /* is it above diagonal (in bd (compressed) numbering) */ 2429f6d58c54SBarry Smith if (garray[*b_jsendbuf] > A->rmap->rstart/bs + i) break; 2430f6d58c54SBarry Smith jsendbuf[cnt++] = garray[*b_jsendbuf++]; 2431f6d58c54SBarry Smith m--; 2432f6d58c54SBarry Smith } 2433f6d58c54SBarry Smith 2434f6d58c54SBarry Smith /* put in diagonal portion */ 2435f6d58c54SBarry Smith for (j=ad->i[i]; j<ad->i[i+1]; j++) { 2436f6d58c54SBarry Smith jsendbuf[cnt++] = A->rmap->rstart/bs + *a_jsendbuf++; 2437f6d58c54SBarry Smith } 2438f6d58c54SBarry Smith 2439f6d58c54SBarry Smith /* put in upper diagonal portion */ 2440f6d58c54SBarry Smith while (m-- > 0) { 2441f6d58c54SBarry Smith jsendbuf[cnt++] = garray[*b_jsendbuf++]; 2442f6d58c54SBarry Smith } 2443f6d58c54SBarry Smith } 2444f6d58c54SBarry Smith if (cnt != sendcount) SETERRQ2(PETSC_ERR_PLIB,"Corrupted PETSc matrix: nz given %D actual nz %D",sendcount,cnt); 2445f6d58c54SBarry Smith 2446f6d58c54SBarry Smith /*-------------------------------------------------------------------- 2447f6d58c54SBarry Smith Gather all column indices to all processors 2448f6d58c54SBarry Smith */ 2449f6d58c54SBarry Smith for (i=0; i<size; i++) { 2450f6d58c54SBarry Smith recvcounts[i] = 0; 2451f6d58c54SBarry Smith for (j=A->rmap->range[i]/bs; j<A->rmap->range[i+1]/bs; j++) { 2452f6d58c54SBarry Smith recvcounts[i] += lens[j]; 2453f6d58c54SBarry Smith } 2454f6d58c54SBarry Smith } 2455f6d58c54SBarry Smith displs[0] = 0; 2456f6d58c54SBarry Smith for (i=1; i<size; i++) { 2457f6d58c54SBarry Smith displs[i] = displs[i-1] + recvcounts[i-1]; 2458f6d58c54SBarry Smith } 2459f6d58c54SBarry Smith #if defined(PETSC_HAVE_MPI_IN_PLACE) 2460f6d58c54SBarry Smith ierr = MPI_Allgatherv(MPI_IN_PLACE,0,MPI_DATATYPE_NULL,b->j,recvcounts,displs,MPIU_INT,((PetscObject)A)->comm);CHKERRQ(ierr); 2461f6d58c54SBarry Smith #else 2462f6d58c54SBarry Smith ierr = MPI_Allgatherv(jsendbuf,sendcount,MPIU_INT,b->j,recvcounts,displs,MPIU_INT,((PetscObject)A)->comm);CHKERRQ(ierr); 2463f6d58c54SBarry Smith #endif 2464f6d58c54SBarry Smith /*-------------------------------------------------------------------- 2465f6d58c54SBarry Smith Assemble the matrix into useable form (note numerical values not yet set) 2466f6d58c54SBarry Smith */ 2467f6d58c54SBarry Smith /* set the b->ilen (length of each row) values */ 2468f6d58c54SBarry Smith ierr = PetscMemcpy(b->ilen,lens,(A->rmap->N/bs)*sizeof(PetscInt));CHKERRQ(ierr); 2469f6d58c54SBarry Smith /* set the b->i indices */ 2470f6d58c54SBarry Smith b->i[0] = 0; 2471f6d58c54SBarry Smith for (i=1; i<=A->rmap->N/bs; i++) { 2472f6d58c54SBarry Smith b->i[i] = b->i[i-1] + lens[i-1]; 2473f6d58c54SBarry Smith } 2474f6d58c54SBarry Smith ierr = PetscFree(lens);CHKERRQ(ierr); 2475f6d58c54SBarry Smith ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 2476f6d58c54SBarry Smith ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 2477f6d58c54SBarry Smith ierr = PetscFree(recvcounts);CHKERRQ(ierr); 2478f6d58c54SBarry Smith 2479f6d58c54SBarry Smith if (A->symmetric){ 2480f6d58c54SBarry Smith ierr = MatSetOption(B,MAT_SYMMETRIC,PETSC_TRUE);CHKERRQ(ierr); 2481f6d58c54SBarry Smith } else if (A->hermitian) { 2482f6d58c54SBarry Smith ierr = MatSetOption(B,MAT_HERMITIAN,PETSC_TRUE);CHKERRQ(ierr); 2483f6d58c54SBarry Smith } else if (A->structurally_symmetric) { 2484f6d58c54SBarry Smith ierr = MatSetOption(B,MAT_STRUCTURALLY_SYMMETRIC,PETSC_TRUE);CHKERRQ(ierr); 2485f6d58c54SBarry Smith } 2486f6d58c54SBarry Smith *newmat = B; 2487f6d58c54SBarry Smith PetscFunctionReturn(0); 2488f6d58c54SBarry Smith } 2489f6d58c54SBarry Smith 2490b1a666ecSBarry Smith #undef __FUNCT__ 2491b1a666ecSBarry Smith #define __FUNCT__ "MatSOR_MPIBAIJ" 2492b1a666ecSBarry Smith PetscErrorCode MatSOR_MPIBAIJ(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx) 2493b1a666ecSBarry Smith { 2494b1a666ecSBarry Smith Mat_MPIBAIJ *mat = (Mat_MPIBAIJ*)matin->data; 2495b1a666ecSBarry Smith PetscErrorCode ierr; 2496b1a666ecSBarry Smith Vec bb1 = 0; 2497b1a666ecSBarry Smith 2498b1a666ecSBarry Smith PetscFunctionBegin; 2499b1a666ecSBarry Smith if (its > 1 || ~flag & SOR_ZERO_INITIAL_GUESS) { 2500b1a666ecSBarry Smith ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr); 2501b1a666ecSBarry Smith } 2502b1a666ecSBarry Smith 2503b1a666ecSBarry Smith if (flag == SOR_APPLY_UPPER) { 2504b1a666ecSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr); 2505b1a666ecSBarry Smith PetscFunctionReturn(0); 2506b1a666ecSBarry Smith } 2507b1a666ecSBarry Smith 2508b1a666ecSBarry Smith if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP){ 2509b1a666ecSBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 2510b1a666ecSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr); 2511b1a666ecSBarry Smith its--; 2512b1a666ecSBarry Smith } 2513b1a666ecSBarry Smith 2514b1a666ecSBarry Smith while (its--) { 2515b1a666ecSBarry Smith ierr = VecScatterBegin(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 2516b1a666ecSBarry Smith ierr = VecScatterEnd(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 2517b1a666ecSBarry Smith 2518b1a666ecSBarry Smith /* update rhs: bb1 = bb - B*x */ 2519b1a666ecSBarry Smith ierr = VecScale(mat->lvec,-1.0);CHKERRQ(ierr); 2520b1a666ecSBarry Smith ierr = (*mat->B->ops->multadd)(mat->B,mat->lvec,bb,bb1);CHKERRQ(ierr); 2521b1a666ecSBarry Smith 2522b1a666ecSBarry Smith /* local sweep */ 2523b1a666ecSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,1,xx);CHKERRQ(ierr); 2524b1a666ecSBarry Smith } 2525b1a666ecSBarry Smith } else if (flag & SOR_LOCAL_FORWARD_SWEEP){ 2526b1a666ecSBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 2527b1a666ecSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr); 2528b1a666ecSBarry Smith its--; 2529b1a666ecSBarry Smith } 2530b1a666ecSBarry Smith while (its--) { 2531b1a666ecSBarry Smith ierr = VecScatterBegin(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 2532b1a666ecSBarry Smith ierr = VecScatterEnd(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 2533b1a666ecSBarry Smith 2534b1a666ecSBarry Smith /* update rhs: bb1 = bb - B*x */ 2535b1a666ecSBarry Smith ierr = VecScale(mat->lvec,-1.0);CHKERRQ(ierr); 2536b1a666ecSBarry Smith ierr = (*mat->B->ops->multadd)(mat->B,mat->lvec,bb,bb1);CHKERRQ(ierr); 2537b1a666ecSBarry Smith 2538b1a666ecSBarry Smith /* local sweep */ 2539b1a666ecSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_FORWARD_SWEEP,fshift,lits,1,xx);CHKERRQ(ierr); 2540b1a666ecSBarry Smith } 2541b1a666ecSBarry Smith } else if (flag & SOR_LOCAL_BACKWARD_SWEEP){ 2542b1a666ecSBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 2543b1a666ecSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr); 2544b1a666ecSBarry Smith its--; 2545b1a666ecSBarry Smith } 2546b1a666ecSBarry Smith while (its--) { 2547b1a666ecSBarry Smith ierr = VecScatterBegin(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 2548b1a666ecSBarry Smith ierr = VecScatterEnd(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 2549b1a666ecSBarry Smith 2550b1a666ecSBarry Smith /* update rhs: bb1 = bb - B*x */ 2551b1a666ecSBarry Smith ierr = VecScale(mat->lvec,-1.0);CHKERRQ(ierr); 2552b1a666ecSBarry Smith ierr = (*mat->B->ops->multadd)(mat->B,mat->lvec,bb,bb1);CHKERRQ(ierr); 2553b1a666ecSBarry Smith 2554b1a666ecSBarry Smith /* local sweep */ 2555b1a666ecSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_BACKWARD_SWEEP,fshift,lits,1,xx);CHKERRQ(ierr); 2556b1a666ecSBarry Smith } 2557b1a666ecSBarry Smith } else { 2558b1a666ecSBarry Smith SETERRQ(PETSC_ERR_SUP,"Parallel version of SOR requested not supported"); 2559b1a666ecSBarry Smith } 2560b1a666ecSBarry Smith 2561b1a666ecSBarry Smith if (bb1) {ierr = VecDestroy(bb1);CHKERRQ(ierr);} 2562b1a666ecSBarry Smith PetscFunctionReturn(0); 2563b1a666ecSBarry Smith } 2564b1a666ecSBarry Smith 2565f6d58c54SBarry Smith extern PetscErrorCode PETSCMAT_DLLEXPORT MatFDColoringApply_BAIJ(Mat,MatFDColoring,Vec,MatStructure*,void*); 2566f6d58c54SBarry Smith 25678c7482ecSBarry Smith 256879bdfe76SSatish Balay /* -------------------------------------------------------------------*/ 2569cc2dc46cSBarry Smith static struct _MatOps MatOps_Values = { 2570cc2dc46cSBarry Smith MatSetValues_MPIBAIJ, 2571cc2dc46cSBarry Smith MatGetRow_MPIBAIJ, 2572cc2dc46cSBarry Smith MatRestoreRow_MPIBAIJ, 2573cc2dc46cSBarry Smith MatMult_MPIBAIJ, 257497304618SKris Buschelman /* 4*/ MatMultAdd_MPIBAIJ, 25757c922b88SBarry Smith MatMultTranspose_MPIBAIJ, 25767c922b88SBarry Smith MatMultTransposeAdd_MPIBAIJ, 2577cc2dc46cSBarry Smith 0, 2578cc2dc46cSBarry Smith 0, 2579cc2dc46cSBarry Smith 0, 258097304618SKris Buschelman /*10*/ 0, 2581cc2dc46cSBarry Smith 0, 2582cc2dc46cSBarry Smith 0, 2583b1a666ecSBarry Smith MatSOR_MPIBAIJ, 2584cc2dc46cSBarry Smith MatTranspose_MPIBAIJ, 258597304618SKris Buschelman /*15*/ MatGetInfo_MPIBAIJ, 25867fc3c18eSBarry Smith MatEqual_MPIBAIJ, 2587cc2dc46cSBarry Smith MatGetDiagonal_MPIBAIJ, 2588cc2dc46cSBarry Smith MatDiagonalScale_MPIBAIJ, 2589cc2dc46cSBarry Smith MatNorm_MPIBAIJ, 259097304618SKris Buschelman /*20*/ MatAssemblyBegin_MPIBAIJ, 2591cc2dc46cSBarry Smith MatAssemblyEnd_MPIBAIJ, 2592cc2dc46cSBarry Smith MatSetOption_MPIBAIJ, 2593cc2dc46cSBarry Smith MatZeroEntries_MPIBAIJ, 2594d519adbfSMatthew Knepley /*24*/ MatZeroRows_MPIBAIJ, 2595cc2dc46cSBarry Smith 0, 2596cc2dc46cSBarry Smith 0, 2597cc2dc46cSBarry Smith 0, 2598cc2dc46cSBarry Smith 0, 2599d519adbfSMatthew Knepley /*29*/ MatSetUpPreallocation_MPIBAIJ, 2600273d9f13SBarry Smith 0, 2601cc2dc46cSBarry Smith 0, 2602cc2dc46cSBarry Smith 0, 2603cc2dc46cSBarry Smith 0, 2604d519adbfSMatthew Knepley /*34*/ MatDuplicate_MPIBAIJ, 2605cc2dc46cSBarry Smith 0, 2606cc2dc46cSBarry Smith 0, 2607cc2dc46cSBarry Smith 0, 2608cc2dc46cSBarry Smith 0, 2609d519adbfSMatthew Knepley /*39*/ MatAXPY_MPIBAIJ, 2610cc2dc46cSBarry Smith MatGetSubMatrices_MPIBAIJ, 2611cc2dc46cSBarry Smith MatIncreaseOverlap_MPIBAIJ, 2612cc2dc46cSBarry Smith MatGetValues_MPIBAIJ, 26133c896bc6SHong Zhang MatCopy_MPIBAIJ, 2614d519adbfSMatthew Knepley /*44*/ 0, 2615cc2dc46cSBarry Smith MatScale_MPIBAIJ, 2616cc2dc46cSBarry Smith 0, 2617cc2dc46cSBarry Smith 0, 2618cc2dc46cSBarry Smith 0, 261941c166b1SJed Brown /*49*/ MatSetBlockSize_MPIBAIJ, 2620cc2dc46cSBarry Smith 0, 2621cc2dc46cSBarry Smith 0, 2622cc2dc46cSBarry Smith 0, 2623cc2dc46cSBarry Smith 0, 2624f6d58c54SBarry Smith /*54*/ MatFDColoringCreate_MPIBAIJ, 2625cc2dc46cSBarry Smith 0, 2626cc2dc46cSBarry Smith MatSetUnfactored_MPIBAIJ, 262782094794SBarry Smith MatPermute_MPIBAIJ, 2628cc2dc46cSBarry Smith MatSetValuesBlocked_MPIBAIJ, 2629d519adbfSMatthew Knepley /*59*/ MatGetSubMatrix_MPIBAIJ, 2630f14a1c24SBarry Smith MatDestroy_MPIBAIJ, 2631f14a1c24SBarry Smith MatView_MPIBAIJ, 2632357abbc8SBarry Smith 0, 26337843d17aSBarry Smith 0, 2634d519adbfSMatthew Knepley /*64*/ 0, 26357843d17aSBarry Smith 0, 26367843d17aSBarry Smith 0, 26377843d17aSBarry Smith 0, 26387843d17aSBarry Smith 0, 2639d519adbfSMatthew Knepley /*69*/ MatGetRowMaxAbs_MPIBAIJ, 26407843d17aSBarry Smith 0, 264197304618SKris Buschelman 0, 264297304618SKris Buschelman 0, 264397304618SKris Buschelman 0, 2644d519adbfSMatthew Knepley /*74*/ 0, 2645f6d58c54SBarry Smith MatFDColoringApply_BAIJ, 264697304618SKris Buschelman 0, 264797304618SKris Buschelman 0, 264897304618SKris Buschelman 0, 2649d519adbfSMatthew Knepley /*79*/ 0, 265097304618SKris Buschelman 0, 265197304618SKris Buschelman 0, 265297304618SKris Buschelman 0, 2653865e5f61SKris Buschelman MatLoad_MPIBAIJ, 2654d519adbfSMatthew Knepley /*84*/ 0, 2655865e5f61SKris Buschelman 0, 2656865e5f61SKris Buschelman 0, 2657865e5f61SKris Buschelman 0, 2658865e5f61SKris Buschelman 0, 2659d519adbfSMatthew Knepley /*89*/ 0, 2660865e5f61SKris Buschelman 0, 2661865e5f61SKris Buschelman 0, 2662865e5f61SKris Buschelman 0, 2663865e5f61SKris Buschelman 0, 2664d519adbfSMatthew Knepley /*94*/ 0, 2665865e5f61SKris Buschelman 0, 2666865e5f61SKris Buschelman 0, 266799cafbc1SBarry Smith 0, 266899cafbc1SBarry Smith 0, 2669d519adbfSMatthew Knepley /*99*/ 0, 267099cafbc1SBarry Smith 0, 267199cafbc1SBarry Smith 0, 267299cafbc1SBarry Smith 0, 267399cafbc1SBarry Smith 0, 2674d519adbfSMatthew Knepley /*104*/0, 267599cafbc1SBarry Smith MatRealPart_MPIBAIJ, 26768c7482ecSBarry Smith MatImaginaryPart_MPIBAIJ, 26778c7482ecSBarry Smith 0, 26788c7482ecSBarry Smith 0, 2679d519adbfSMatthew Knepley /*109*/0, 26808c7482ecSBarry Smith 0, 26818c7482ecSBarry Smith 0, 26828c7482ecSBarry Smith 0, 26838c7482ecSBarry Smith 0, 2684f6d58c54SBarry Smith /*114*/MatGetSeqNonzerostructure_MPIBAIJ, 26858c7482ecSBarry Smith 0, 26868c7482ecSBarry Smith MatGetGhosts_MPIBAIJ 26878c7482ecSBarry Smith }; 268879bdfe76SSatish Balay 2689e18c124aSSatish Balay EXTERN_C_BEGIN 26904a2ae208SSatish Balay #undef __FUNCT__ 26914a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonalBlock_MPIBAIJ" 2692be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatGetDiagonalBlock_MPIBAIJ(Mat A,PetscTruth *iscopy,MatReuse reuse,Mat *a) 26935ef9f2a5SBarry Smith { 26945ef9f2a5SBarry Smith PetscFunctionBegin; 26955ef9f2a5SBarry Smith *a = ((Mat_MPIBAIJ *)A->data)->A; 26965ef9f2a5SBarry Smith *iscopy = PETSC_FALSE; 26975ef9f2a5SBarry Smith PetscFunctionReturn(0); 26985ef9f2a5SBarry Smith } 2699e18c124aSSatish Balay EXTERN_C_END 270079bdfe76SSatish Balay 2701273d9f13SBarry Smith EXTERN_C_BEGIN 2702f69a0ea3SMatthew Knepley extern PetscErrorCode PETSCMAT_DLLEXPORT MatConvert_MPIBAIJ_MPISBAIJ(Mat, MatType,MatReuse,Mat*); 2703d94109b8SHong Zhang EXTERN_C_END 2704d94109b8SHong Zhang 2705b8d659d7SLisandro Dalcin EXTERN_C_BEGIN 2706aac34f13SBarry Smith #undef __FUNCT__ 2707aac34f13SBarry Smith #define __FUNCT__ "MatMPIBAIJSetPreallocationCSR_MPIBAIJ" 2708cf12db73SBarry Smith PetscErrorCode MatMPIBAIJSetPreallocationCSR_MPIBAIJ(Mat B,PetscInt bs,const PetscInt ii[],const PetscInt jj[],const PetscScalar V[]) 2709aac34f13SBarry Smith { 2710b8d659d7SLisandro Dalcin PetscInt m,rstart,cstart,cend; 2711b8d659d7SLisandro Dalcin PetscInt i,j,d,nz,nz_max=0,*d_nnz=0,*o_nnz=0; 2712b8d659d7SLisandro Dalcin const PetscInt *JJ=0; 2713b8d659d7SLisandro Dalcin PetscScalar *values=0; 2714aac34f13SBarry Smith PetscErrorCode ierr; 2715aac34f13SBarry Smith 2716aac34f13SBarry Smith PetscFunctionBegin; 2717b8d659d7SLisandro Dalcin 2718b8d659d7SLisandro Dalcin if (bs < 1) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Invalid block size specified, must be positive but it is %D",bs); 271926283091SBarry Smith ierr = PetscLayoutSetBlockSize(B->rmap,bs);CHKERRQ(ierr); 272026283091SBarry Smith ierr = PetscLayoutSetBlockSize(B->cmap,bs);CHKERRQ(ierr); 272126283091SBarry Smith ierr = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr); 272226283091SBarry Smith ierr = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr); 2723d0f46423SBarry Smith m = B->rmap->n/bs; 2724d0f46423SBarry Smith rstart = B->rmap->rstart/bs; 2725d0f46423SBarry Smith cstart = B->cmap->rstart/bs; 2726d0f46423SBarry Smith cend = B->cmap->rend/bs; 2727b8d659d7SLisandro Dalcin 2728cf12db73SBarry Smith if (ii[0]) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"ii[0] must be 0 but it is %D",ii[0]); 2729aac34f13SBarry Smith ierr = PetscMalloc((2*m+1)*sizeof(PetscInt),&d_nnz);CHKERRQ(ierr); 2730aac34f13SBarry Smith o_nnz = d_nnz + m; 2731aac34f13SBarry Smith for (i=0; i<m; i++) { 2732cf12db73SBarry Smith nz = ii[i+1] - ii[i]; 2733b8d659d7SLisandro Dalcin if (nz < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Local row %D has a negative number of columns %D",i,nz); 2734b8d659d7SLisandro Dalcin nz_max = PetscMax(nz_max,nz); 2735cf12db73SBarry Smith JJ = jj + ii[i]; 2736b8d659d7SLisandro Dalcin for (j=0; j<nz; j++) { 2737aac34f13SBarry Smith if (*JJ >= cstart) break; 2738aac34f13SBarry Smith JJ++; 2739aac34f13SBarry Smith } 2740aac34f13SBarry Smith d = 0; 2741b8d659d7SLisandro Dalcin for (; j<nz; j++) { 2742aac34f13SBarry Smith if (*JJ++ >= cend) break; 2743aac34f13SBarry Smith d++; 2744aac34f13SBarry Smith } 2745aac34f13SBarry Smith d_nnz[i] = d; 2746b8d659d7SLisandro Dalcin o_nnz[i] = nz - d; 2747aac34f13SBarry Smith } 2748aac34f13SBarry Smith ierr = MatMPIBAIJSetPreallocation(B,bs,0,d_nnz,0,o_nnz);CHKERRQ(ierr); 2749aac34f13SBarry Smith ierr = PetscFree(d_nnz);CHKERRQ(ierr); 2750aac34f13SBarry Smith 2751b8d659d7SLisandro Dalcin values = (PetscScalar*)V; 2752b8d659d7SLisandro Dalcin if (!values) { 2753b8d659d7SLisandro Dalcin ierr = PetscMalloc(bs*bs*(nz_max+1)*sizeof(PetscScalar),&values);CHKERRQ(ierr); 2754b8d659d7SLisandro Dalcin ierr = PetscMemzero(values,bs*bs*nz_max*sizeof(PetscScalar));CHKERRQ(ierr); 2755b8d659d7SLisandro Dalcin } 2756b8d659d7SLisandro Dalcin for (i=0; i<m; i++) { 2757b8d659d7SLisandro Dalcin PetscInt row = i + rstart; 2758cf12db73SBarry Smith PetscInt ncols = ii[i+1] - ii[i]; 2759cf12db73SBarry Smith const PetscInt *icols = jj + ii[i]; 2760cf12db73SBarry Smith const PetscScalar *svals = values + (V ? (bs*bs*ii[i]) : 0); 2761b8d659d7SLisandro Dalcin ierr = MatSetValuesBlocked_MPIBAIJ(B,1,&row,ncols,icols,svals,INSERT_VALUES);CHKERRQ(ierr); 2762aac34f13SBarry Smith } 2763aac34f13SBarry Smith 2764b8d659d7SLisandro Dalcin if (!V) { ierr = PetscFree(values);CHKERRQ(ierr); } 2765aac34f13SBarry Smith ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 2766aac34f13SBarry Smith ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 2767aac34f13SBarry Smith 2768aac34f13SBarry Smith PetscFunctionReturn(0); 2769aac34f13SBarry Smith } 2770b8d659d7SLisandro Dalcin EXTERN_C_END 2771aac34f13SBarry Smith 2772aac34f13SBarry Smith #undef __FUNCT__ 2773aac34f13SBarry Smith #define __FUNCT__ "MatMPIBAIJSetPreallocationCSR" 2774aac34f13SBarry Smith /*@C 2775aac34f13SBarry Smith MatMPIBAIJSetPreallocationCSR - Allocates memory for a sparse parallel matrix in AIJ format 2776aac34f13SBarry Smith (the default parallel PETSc format). 2777aac34f13SBarry Smith 2778aac34f13SBarry Smith Collective on MPI_Comm 2779aac34f13SBarry Smith 2780aac34f13SBarry Smith Input Parameters: 2781aac34f13SBarry Smith + A - the matrix 2782aac34f13SBarry Smith . i - the indices into j for the start of each local row (starts with zero) 2783aac34f13SBarry Smith . j - the column indices for each local row (starts with zero) these must be sorted for each row 2784aac34f13SBarry Smith - v - optional values in the matrix 2785aac34f13SBarry Smith 2786aac34f13SBarry Smith Level: developer 2787aac34f13SBarry Smith 2788aac34f13SBarry Smith .keywords: matrix, aij, compressed row, sparse, parallel 2789aac34f13SBarry Smith 2790aac34f13SBarry Smith .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatMPIBAIJSetPreallocation(), MatCreateMPIAIJ(), MPIAIJ 2791aac34f13SBarry Smith @*/ 2792be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPIBAIJSetPreallocationCSR(Mat B,PetscInt bs,const PetscInt i[],const PetscInt j[], const PetscScalar v[]) 2793aac34f13SBarry Smith { 2794aac34f13SBarry Smith PetscErrorCode ierr,(*f)(Mat,PetscInt,const PetscInt[],const PetscInt[],const PetscScalar[]); 2795aac34f13SBarry Smith 2796aac34f13SBarry Smith PetscFunctionBegin; 2797aac34f13SBarry Smith ierr = PetscObjectQueryFunction((PetscObject)B,"MatMPIBAIJSetPreallocationCSR_C",(void (**)(void))&f);CHKERRQ(ierr); 2798aac34f13SBarry Smith if (f) { 2799aac34f13SBarry Smith ierr = (*f)(B,bs,i,j,v);CHKERRQ(ierr); 2800aac34f13SBarry Smith } 2801aac34f13SBarry Smith PetscFunctionReturn(0); 2802aac34f13SBarry Smith } 2803aac34f13SBarry Smith 2804d94109b8SHong Zhang EXTERN_C_BEGIN 28054a2ae208SSatish Balay #undef __FUNCT__ 2806a23d5eceSKris Buschelman #define __FUNCT__ "MatMPIBAIJSetPreallocation_MPIBAIJ" 2807be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPIBAIJSetPreallocation_MPIBAIJ(Mat B,PetscInt bs,PetscInt d_nz,PetscInt *d_nnz,PetscInt o_nz,PetscInt *o_nnz) 2808a23d5eceSKris Buschelman { 2809a23d5eceSKris Buschelman Mat_MPIBAIJ *b; 2810dfbe8321SBarry Smith PetscErrorCode ierr; 2811db4efbfdSBarry Smith PetscInt i, newbs = PetscAbs(bs); 2812a23d5eceSKris Buschelman 2813a23d5eceSKris Buschelman PetscFunctionBegin; 2814db4efbfdSBarry Smith if (bs < 0) { 28157adad957SLisandro Dalcin ierr = PetscOptionsBegin(((PetscObject)B)->comm,((PetscObject)B)->prefix,"Options for MPIBAIJ matrix","Mat");CHKERRQ(ierr); 2816db4efbfdSBarry Smith ierr = PetscOptionsInt("-mat_block_size","Set the blocksize used to store the matrix","MatMPIBAIJSetPreallocation",newbs,&newbs,PETSC_NULL);CHKERRQ(ierr); 28178c07d4e3SBarry Smith ierr = PetscOptionsEnd();CHKERRQ(ierr); 2818db4efbfdSBarry Smith bs = PetscAbs(bs); 2819db4efbfdSBarry Smith } 2820db4efbfdSBarry Smith if ((d_nnz || o_nnz) && newbs != bs) { 2821db4efbfdSBarry Smith SETERRQ(PETSC_ERR_ARG_WRONG,"Cannot change blocksize from command line if setting d_nnz or o_nnz"); 2822db4efbfdSBarry Smith } 2823db4efbfdSBarry Smith bs = newbs; 2824db4efbfdSBarry Smith 2825a23d5eceSKris Buschelman 2826a23d5eceSKris Buschelman if (bs < 1) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Invalid block size specified, must be positive"); 2827a23d5eceSKris Buschelman if (d_nz == PETSC_DEFAULT || d_nz == PETSC_DECIDE) d_nz = 5; 2828a23d5eceSKris Buschelman if (o_nz == PETSC_DEFAULT || o_nz == PETSC_DECIDE) o_nz = 2; 282977431f27SBarry Smith if (d_nz < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"d_nz cannot be less than 0: value %D",d_nz); 283077431f27SBarry Smith if (o_nz < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"o_nz cannot be less than 0: value %D",o_nz); 2831899cda47SBarry Smith 283226283091SBarry Smith ierr = PetscLayoutSetBlockSize(B->rmap,bs);CHKERRQ(ierr); 283326283091SBarry Smith ierr = PetscLayoutSetBlockSize(B->cmap,bs);CHKERRQ(ierr); 283426283091SBarry Smith ierr = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr); 283526283091SBarry Smith ierr = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr); 2836899cda47SBarry Smith 2837a23d5eceSKris Buschelman if (d_nnz) { 2838d0f46423SBarry Smith for (i=0; i<B->rmap->n/bs; i++) { 283977431f27SBarry Smith if (d_nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"d_nnz cannot be less than -1: local row %D value %D",i,d_nnz[i]); 2840a23d5eceSKris Buschelman } 2841a23d5eceSKris Buschelman } 2842a23d5eceSKris Buschelman if (o_nnz) { 2843d0f46423SBarry Smith for (i=0; i<B->rmap->n/bs; i++) { 284477431f27SBarry Smith if (o_nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"o_nnz cannot be less than -1: local row %D value %D",i,o_nnz[i]); 2845a23d5eceSKris Buschelman } 2846a23d5eceSKris Buschelman } 2847a23d5eceSKris Buschelman 2848a23d5eceSKris Buschelman b = (Mat_MPIBAIJ*)B->data; 2849a23d5eceSKris Buschelman b->bs2 = bs*bs; 2850d0f46423SBarry Smith b->mbs = B->rmap->n/bs; 2851d0f46423SBarry Smith b->nbs = B->cmap->n/bs; 2852d0f46423SBarry Smith b->Mbs = B->rmap->N/bs; 2853d0f46423SBarry Smith b->Nbs = B->cmap->N/bs; 2854a23d5eceSKris Buschelman 2855a23d5eceSKris Buschelman for (i=0; i<=b->size; i++) { 2856d0f46423SBarry Smith b->rangebs[i] = B->rmap->range[i]/bs; 2857a23d5eceSKris Buschelman } 2858d0f46423SBarry Smith b->rstartbs = B->rmap->rstart/bs; 2859d0f46423SBarry Smith b->rendbs = B->rmap->rend/bs; 2860d0f46423SBarry Smith b->cstartbs = B->cmap->rstart/bs; 2861d0f46423SBarry Smith b->cendbs = B->cmap->rend/bs; 2862a23d5eceSKris Buschelman 2863526dfc15SBarry Smith if (!B->preallocated) { 2864f69a0ea3SMatthew Knepley ierr = MatCreate(PETSC_COMM_SELF,&b->A);CHKERRQ(ierr); 2865d0f46423SBarry Smith ierr = MatSetSizes(b->A,B->rmap->n,B->cmap->n,B->rmap->n,B->cmap->n);CHKERRQ(ierr); 28669c097c71SKris Buschelman ierr = MatSetType(b->A,MATSEQBAIJ);CHKERRQ(ierr); 286752e6d16bSBarry Smith ierr = PetscLogObjectParent(B,b->A);CHKERRQ(ierr); 2868f69a0ea3SMatthew Knepley ierr = MatCreate(PETSC_COMM_SELF,&b->B);CHKERRQ(ierr); 2869d0f46423SBarry Smith ierr = MatSetSizes(b->B,B->rmap->n,B->cmap->N,B->rmap->n,B->cmap->N);CHKERRQ(ierr); 28709c097c71SKris Buschelman ierr = MatSetType(b->B,MATSEQBAIJ);CHKERRQ(ierr); 287152e6d16bSBarry Smith ierr = PetscLogObjectParent(B,b->B);CHKERRQ(ierr); 28727adad957SLisandro Dalcin ierr = MatStashCreate_Private(((PetscObject)B)->comm,bs,&B->bstash);CHKERRQ(ierr); 2873526dfc15SBarry Smith } 2874a23d5eceSKris Buschelman 2875526dfc15SBarry Smith ierr = MatSeqBAIJSetPreallocation(b->A,bs,d_nz,d_nnz);CHKERRQ(ierr); 2876526dfc15SBarry Smith ierr = MatSeqBAIJSetPreallocation(b->B,bs,o_nz,o_nnz);CHKERRQ(ierr); 2877526dfc15SBarry Smith B->preallocated = PETSC_TRUE; 2878a23d5eceSKris Buschelman PetscFunctionReturn(0); 2879a23d5eceSKris Buschelman } 2880a23d5eceSKris Buschelman EXTERN_C_END 2881a23d5eceSKris Buschelman 2882a23d5eceSKris Buschelman EXTERN_C_BEGIN 2883be1d678aSKris Buschelman EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatDiagonalScaleLocal_MPIBAIJ(Mat,Vec); 2884be1d678aSKris Buschelman EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatSetHashTableFactor_MPIBAIJ(Mat,PetscReal); 288592b32695SKris Buschelman EXTERN_C_END 28865bf65638SKris Buschelman 288782094794SBarry Smith 288882094794SBarry Smith EXTERN_C_BEGIN 288982094794SBarry Smith #undef __FUNCT__ 289082094794SBarry Smith #define __FUNCT__ "MatConvert_MPIBAIJ_MPIAdj" 289182094794SBarry Smith PetscErrorCode PETSCMAT_DLLEXPORT MatConvert_MPIBAIJ_MPIAdj(Mat B, const MatType newtype,MatReuse reuse,Mat *adj) 289282094794SBarry Smith { 289382094794SBarry Smith Mat_MPIBAIJ *b = (Mat_MPIBAIJ*)B->data; 289482094794SBarry Smith PetscErrorCode ierr; 289582094794SBarry Smith Mat_SeqBAIJ *d = (Mat_SeqBAIJ*) b->A->data,*o = (Mat_SeqBAIJ*) b->B->data; 289682094794SBarry Smith PetscInt M = B->rmap->n/B->rmap->bs,i,*ii,*jj,cnt,j,k,rstart = B->rmap->rstart/B->rmap->bs; 289782094794SBarry Smith const PetscInt *id = d->i, *jd = d->j, *io = o->i, *jo = o->j, *garray = b->garray; 289882094794SBarry Smith 289982094794SBarry Smith PetscFunctionBegin; 290082094794SBarry Smith ierr = PetscMalloc((M+1)*sizeof(PetscInt),&ii);CHKERRQ(ierr); 290182094794SBarry Smith ii[0] = 0; 290282094794SBarry Smith CHKMEMQ; 290382094794SBarry Smith for (i=0; i<M; i++) { 290482094794SBarry Smith if ((id[i+1] - id[i]) < 0) SETERRQ3(PETSC_ERR_PLIB,"Indices wrong %D %D %D",i,id[i],id[i+1]); 290582094794SBarry Smith if ((io[i+1] - io[i]) < 0) SETERRQ3(PETSC_ERR_PLIB,"Indices wrong %D %D %D",i,io[i],io[i+1]); 290682094794SBarry Smith ii[i+1] = ii[i] + id[i+1] - id[i] + io[i+1] - io[i]; 290782094794SBarry Smith /* remove one from count of matrix has diagonal */ 290882094794SBarry Smith for (j=id[i]; j<id[i+1]; j++) { 290982094794SBarry Smith if (jd[j] == i) {ii[i+1]--;break;} 291082094794SBarry Smith } 291182094794SBarry Smith CHKMEMQ; 291282094794SBarry Smith } 291382094794SBarry Smith ierr = PetscMalloc(ii[M]*sizeof(PetscInt),&jj);CHKERRQ(ierr); 291482094794SBarry Smith cnt = 0; 291582094794SBarry Smith for (i=0; i<M; i++) { 291682094794SBarry Smith for (j=io[i]; j<io[i+1]; j++) { 291782094794SBarry Smith if (garray[jo[j]] > rstart) break; 291882094794SBarry Smith jj[cnt++] = garray[jo[j]]; 291982094794SBarry Smith CHKMEMQ; 292082094794SBarry Smith } 292182094794SBarry Smith for (k=id[i]; k<id[i+1]; k++) { 292282094794SBarry Smith if (jd[k] != i) { 292382094794SBarry Smith jj[cnt++] = rstart + jd[k]; 292482094794SBarry Smith CHKMEMQ; 292582094794SBarry Smith } 292682094794SBarry Smith } 292782094794SBarry Smith for (;j<io[i+1]; j++) { 292882094794SBarry Smith jj[cnt++] = garray[jo[j]]; 292982094794SBarry Smith CHKMEMQ; 293082094794SBarry Smith } 293182094794SBarry Smith } 293282094794SBarry Smith ierr = MatCreateMPIAdj(((PetscObject)B)->comm,M,B->cmap->N/B->rmap->bs,ii,jj,PETSC_NULL,adj);CHKERRQ(ierr); 293382094794SBarry Smith PetscFunctionReturn(0); 293482094794SBarry Smith } 2935dbf0e21dSBarry Smith EXTERN_C_END 293682094794SBarry Smith 29370bad9183SKris Buschelman /*MC 2938fafad747SKris Buschelman MATMPIBAIJ - MATMPIBAIJ = "mpibaij" - A matrix type to be used for distributed block sparse matrices. 29390bad9183SKris Buschelman 29400bad9183SKris Buschelman Options Database Keys: 29418c07d4e3SBarry Smith + -mat_type mpibaij - sets the matrix type to "mpibaij" during a call to MatSetFromOptions() 29428c07d4e3SBarry Smith . -mat_block_size <bs> - set the blocksize used to store the matrix 29438c07d4e3SBarry Smith - -mat_use_hash_table <fact> 29440bad9183SKris Buschelman 29450bad9183SKris Buschelman Level: beginner 29460bad9183SKris Buschelman 29470bad9183SKris Buschelman .seealso: MatCreateMPIBAIJ 29480bad9183SKris Buschelman M*/ 29490bad9183SKris Buschelman 295092b32695SKris Buschelman EXTERN_C_BEGIN 2951a23d5eceSKris Buschelman #undef __FUNCT__ 29524a2ae208SSatish Balay #define __FUNCT__ "MatCreate_MPIBAIJ" 2953be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreate_MPIBAIJ(Mat B) 2954273d9f13SBarry Smith { 2955273d9f13SBarry Smith Mat_MPIBAIJ *b; 2956dfbe8321SBarry Smith PetscErrorCode ierr; 2957273d9f13SBarry Smith PetscTruth flg; 2958273d9f13SBarry Smith 2959273d9f13SBarry Smith PetscFunctionBegin; 296038f2d2fdSLisandro Dalcin ierr = PetscNewLog(B,Mat_MPIBAIJ,&b);CHKERRQ(ierr); 296182502324SSatish Balay B->data = (void*)b; 296282502324SSatish Balay 2963085a36d4SBarry Smith 2964273d9f13SBarry Smith ierr = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr); 2965273d9f13SBarry Smith B->mapping = 0; 2966273d9f13SBarry Smith B->assembled = PETSC_FALSE; 2967273d9f13SBarry Smith 2968273d9f13SBarry Smith B->insertmode = NOT_SET_VALUES; 29697adad957SLisandro Dalcin ierr = MPI_Comm_rank(((PetscObject)B)->comm,&b->rank);CHKERRQ(ierr); 29707adad957SLisandro Dalcin ierr = MPI_Comm_size(((PetscObject)B)->comm,&b->size);CHKERRQ(ierr); 2971273d9f13SBarry Smith 2972273d9f13SBarry Smith /* build local table of row and column ownerships */ 2973899cda47SBarry Smith ierr = PetscMalloc((b->size+1)*sizeof(PetscInt),&b->rangebs);CHKERRQ(ierr); 2974273d9f13SBarry Smith 2975273d9f13SBarry Smith /* build cache for off array entries formed */ 29767adad957SLisandro Dalcin ierr = MatStashCreate_Private(((PetscObject)B)->comm,1,&B->stash);CHKERRQ(ierr); 2977273d9f13SBarry Smith b->donotstash = PETSC_FALSE; 2978273d9f13SBarry Smith b->colmap = PETSC_NULL; 2979273d9f13SBarry Smith b->garray = PETSC_NULL; 2980273d9f13SBarry Smith b->roworiented = PETSC_TRUE; 2981273d9f13SBarry Smith 2982273d9f13SBarry Smith /* stuff used in block assembly */ 2983273d9f13SBarry Smith b->barray = 0; 2984273d9f13SBarry Smith 2985273d9f13SBarry Smith /* stuff used for matrix vector multiply */ 2986273d9f13SBarry Smith b->lvec = 0; 2987273d9f13SBarry Smith b->Mvctx = 0; 2988273d9f13SBarry Smith 2989273d9f13SBarry Smith /* stuff for MatGetRow() */ 2990273d9f13SBarry Smith b->rowindices = 0; 2991273d9f13SBarry Smith b->rowvalues = 0; 2992273d9f13SBarry Smith b->getrowactive = PETSC_FALSE; 2993273d9f13SBarry Smith 2994273d9f13SBarry Smith /* hash table stuff */ 2995273d9f13SBarry Smith b->ht = 0; 2996273d9f13SBarry Smith b->hd = 0; 2997273d9f13SBarry Smith b->ht_size = 0; 2998273d9f13SBarry Smith b->ht_flag = PETSC_FALSE; 2999273d9f13SBarry Smith b->ht_fact = 0; 3000273d9f13SBarry Smith b->ht_total_ct = 0; 3001273d9f13SBarry Smith b->ht_insert_ct = 0; 3002273d9f13SBarry Smith 30037adad957SLisandro Dalcin ierr = PetscOptionsBegin(((PetscObject)B)->comm,PETSC_NULL,"Options for loading MPIBAIJ matrix 1","Mat");CHKERRQ(ierr); 30048c07d4e3SBarry Smith ierr = PetscOptionsTruth("-mat_use_hash_table","Use hash table to save memory in constructing matrix","MatSetOption",PETSC_FALSE,&flg,PETSC_NULL);CHKERRQ(ierr); 3005273d9f13SBarry Smith if (flg) { 3006f6275e2eSBarry Smith PetscReal fact = 1.39; 30074e0d8c25SBarry Smith ierr = MatSetOption(B,MAT_USE_HASH_TABLE,PETSC_TRUE);CHKERRQ(ierr); 30088c07d4e3SBarry Smith ierr = PetscOptionsReal("-mat_use_hash_table","Use hash table factor","MatMPIBAIJSetHashTableFactor",fact,&fact,PETSC_NULL);CHKERRQ(ierr); 3009273d9f13SBarry Smith if (fact <= 1.0) fact = 1.39; 3010273d9f13SBarry Smith ierr = MatMPIBAIJSetHashTableFactor(B,fact);CHKERRQ(ierr); 30111e2582c4SBarry Smith ierr = PetscInfo1(B,"Hash table Factor used %5.2f\n",fact);CHKERRQ(ierr); 3012273d9f13SBarry Smith } 30138c07d4e3SBarry Smith ierr = PetscOptionsEnd();CHKERRQ(ierr); 30148c07d4e3SBarry Smith 301582094794SBarry Smith ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatConvert_mpibaij_mpiadj_C", 301682094794SBarry Smith "MatConvert_MPIBAIJ_MPIAdj", 301782094794SBarry Smith MatConvert_MPIBAIJ_MPIAdj);CHKERRQ(ierr); 3018273d9f13SBarry Smith ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatStoreValues_C", 3019273d9f13SBarry Smith "MatStoreValues_MPIBAIJ", 3020273d9f13SBarry Smith MatStoreValues_MPIBAIJ);CHKERRQ(ierr); 3021273d9f13SBarry Smith ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatRetrieveValues_C", 3022273d9f13SBarry Smith "MatRetrieveValues_MPIBAIJ", 3023273d9f13SBarry Smith MatRetrieveValues_MPIBAIJ);CHKERRQ(ierr); 3024273d9f13SBarry Smith ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetDiagonalBlock_C", 3025273d9f13SBarry Smith "MatGetDiagonalBlock_MPIBAIJ", 3026273d9f13SBarry Smith MatGetDiagonalBlock_MPIBAIJ);CHKERRQ(ierr); 3027a23d5eceSKris Buschelman ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatMPIBAIJSetPreallocation_C", 3028a23d5eceSKris Buschelman "MatMPIBAIJSetPreallocation_MPIBAIJ", 3029a23d5eceSKris Buschelman MatMPIBAIJSetPreallocation_MPIBAIJ);CHKERRQ(ierr); 3030aac34f13SBarry Smith ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatMPIBAIJSetPreallocationCSR_C", 303144ec7894SLisandro Dalcin "MatMPIBAIJSetPreallocationCSR_MPIBAIJ", 3032aac34f13SBarry Smith MatMPIBAIJSetPreallocationCSR_MPIBAIJ);CHKERRQ(ierr); 303392b32695SKris Buschelman ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatDiagonalScaleLocal_C", 303492b32695SKris Buschelman "MatDiagonalScaleLocal_MPIBAIJ", 303592b32695SKris Buschelman MatDiagonalScaleLocal_MPIBAIJ);CHKERRQ(ierr); 30365bf65638SKris Buschelman ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatSetHashTableFactor_C", 30375bf65638SKris Buschelman "MatSetHashTableFactor_MPIBAIJ", 30385bf65638SKris Buschelman MatSetHashTableFactor_MPIBAIJ);CHKERRQ(ierr); 303917667f90SBarry Smith ierr = PetscObjectChangeTypeName((PetscObject)B,MATMPIBAIJ);CHKERRQ(ierr); 3040273d9f13SBarry Smith PetscFunctionReturn(0); 3041273d9f13SBarry Smith } 3042273d9f13SBarry Smith EXTERN_C_END 3043273d9f13SBarry Smith 3044209238afSKris Buschelman /*MC 3045002d173eSKris Buschelman MATBAIJ - MATBAIJ = "baij" - A matrix type to be used for block sparse matrices. 3046209238afSKris Buschelman 3047209238afSKris Buschelman This matrix type is identical to MATSEQBAIJ when constructed with a single process communicator, 3048209238afSKris Buschelman and MATMPIBAIJ otherwise. 3049209238afSKris Buschelman 3050209238afSKris Buschelman Options Database Keys: 3051209238afSKris Buschelman . -mat_type baij - sets the matrix type to "baij" during a call to MatSetFromOptions() 3052209238afSKris Buschelman 3053209238afSKris Buschelman Level: beginner 3054209238afSKris Buschelman 3055aac34f13SBarry Smith .seealso: MatCreateMPIBAIJ(),MATSEQBAIJ,MATMPIBAIJ, MatMPIBAIJSetPreallocation(), MatMPIBAIJSetPreallocationCSR() 3056209238afSKris Buschelman M*/ 3057209238afSKris Buschelman 3058209238afSKris Buschelman EXTERN_C_BEGIN 3059209238afSKris Buschelman #undef __FUNCT__ 3060209238afSKris Buschelman #define __FUNCT__ "MatCreate_BAIJ" 3061be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreate_BAIJ(Mat A) 3062dfbe8321SBarry Smith { 30636849ba73SBarry Smith PetscErrorCode ierr; 3064b24ad042SBarry Smith PetscMPIInt size; 3065209238afSKris Buschelman 3066209238afSKris Buschelman PetscFunctionBegin; 30677adad957SLisandro Dalcin ierr = MPI_Comm_size(((PetscObject)A)->comm,&size);CHKERRQ(ierr); 3068209238afSKris Buschelman if (size == 1) { 3069209238afSKris Buschelman ierr = MatSetType(A,MATSEQBAIJ);CHKERRQ(ierr); 3070209238afSKris Buschelman } else { 3071209238afSKris Buschelman ierr = MatSetType(A,MATMPIBAIJ);CHKERRQ(ierr); 3072209238afSKris Buschelman } 3073209238afSKris Buschelman PetscFunctionReturn(0); 3074209238afSKris Buschelman } 3075209238afSKris Buschelman EXTERN_C_END 3076209238afSKris Buschelman 30774a2ae208SSatish Balay #undef __FUNCT__ 30784a2ae208SSatish Balay #define __FUNCT__ "MatMPIBAIJSetPreallocation" 3079273d9f13SBarry Smith /*@C 3080aac34f13SBarry Smith MatMPIBAIJSetPreallocation - Allocates memory for a sparse parallel matrix in block AIJ format 3081273d9f13SBarry Smith (block compressed row). For good matrix assembly performance 3082273d9f13SBarry Smith the user should preallocate the matrix storage by setting the parameters 3083273d9f13SBarry Smith d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 3084273d9f13SBarry Smith performance can be increased by more than a factor of 50. 3085273d9f13SBarry Smith 3086273d9f13SBarry Smith Collective on Mat 3087273d9f13SBarry Smith 3088273d9f13SBarry Smith Input Parameters: 3089273d9f13SBarry Smith + A - the matrix 3090273d9f13SBarry Smith . bs - size of blockk 3091273d9f13SBarry Smith . d_nz - number of block nonzeros per block row in diagonal portion of local 3092273d9f13SBarry Smith submatrix (same for all local rows) 3093273d9f13SBarry Smith . d_nnz - array containing the number of block nonzeros in the various block rows 3094273d9f13SBarry Smith of the in diagonal portion of the local (possibly different for each block 3095273d9f13SBarry Smith row) or PETSC_NULL. You must leave room for the diagonal entry even if it is zero. 3096273d9f13SBarry Smith . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 3097273d9f13SBarry Smith submatrix (same for all local rows). 3098273d9f13SBarry Smith - o_nnz - array containing the number of nonzeros in the various block rows of the 3099273d9f13SBarry Smith off-diagonal portion of the local submatrix (possibly different for 3100273d9f13SBarry Smith each block row) or PETSC_NULL. 3101273d9f13SBarry Smith 310249a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 3103273d9f13SBarry Smith 3104273d9f13SBarry Smith Options Database Keys: 31058c07d4e3SBarry Smith + -mat_block_size - size of the blocks to use 31068c07d4e3SBarry Smith - -mat_use_hash_table <fact> 3107273d9f13SBarry Smith 3108273d9f13SBarry Smith Notes: 3109273d9f13SBarry Smith If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one processor 3110273d9f13SBarry Smith than it must be used on all processors that share the object for that argument. 3111273d9f13SBarry Smith 3112273d9f13SBarry Smith Storage Information: 3113273d9f13SBarry Smith For a square global matrix we define each processor's diagonal portion 3114273d9f13SBarry Smith to be its local rows and the corresponding columns (a square submatrix); 3115273d9f13SBarry Smith each processor's off-diagonal portion encompasses the remainder of the 3116273d9f13SBarry Smith local matrix (a rectangular submatrix). 3117273d9f13SBarry Smith 3118273d9f13SBarry Smith The user can specify preallocated storage for the diagonal part of 3119273d9f13SBarry Smith the local submatrix with either d_nz or d_nnz (not both). Set 3120273d9f13SBarry Smith d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic 3121273d9f13SBarry Smith memory allocation. Likewise, specify preallocated storage for the 3122273d9f13SBarry Smith off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 3123273d9f13SBarry Smith 3124273d9f13SBarry Smith Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 3125273d9f13SBarry Smith the figure below we depict these three local rows and all columns (0-11). 3126273d9f13SBarry Smith 3127273d9f13SBarry Smith .vb 3128273d9f13SBarry Smith 0 1 2 3 4 5 6 7 8 9 10 11 3129273d9f13SBarry Smith ------------------- 3130273d9f13SBarry Smith row 3 | o o o d d d o o o o o o 3131273d9f13SBarry Smith row 4 | o o o d d d o o o o o o 3132273d9f13SBarry Smith row 5 | o o o d d d o o o o o o 3133273d9f13SBarry Smith ------------------- 3134273d9f13SBarry Smith .ve 3135273d9f13SBarry Smith 3136273d9f13SBarry Smith Thus, any entries in the d locations are stored in the d (diagonal) 3137273d9f13SBarry Smith submatrix, and any entries in the o locations are stored in the 3138273d9f13SBarry Smith o (off-diagonal) submatrix. Note that the d and the o submatrices are 3139273d9f13SBarry Smith stored simply in the MATSEQBAIJ format for compressed row storage. 3140273d9f13SBarry Smith 3141273d9f13SBarry Smith Now d_nz should indicate the number of block nonzeros per row in the d matrix, 3142273d9f13SBarry Smith and o_nz should indicate the number of block nonzeros per row in the o matrix. 3143273d9f13SBarry Smith In general, for PDE problems in which most nonzeros are near the diagonal, 3144273d9f13SBarry Smith one expects d_nz >> o_nz. For large problems you MUST preallocate memory 3145273d9f13SBarry Smith or you will get TERRIBLE performance; see the users' manual chapter on 3146273d9f13SBarry Smith matrices. 3147273d9f13SBarry Smith 3148aa95bbe8SBarry Smith You can call MatGetInfo() to get information on how effective the preallocation was; 3149aa95bbe8SBarry Smith for example the fields mallocs,nz_allocated,nz_used,nz_unneeded; 3150aa95bbe8SBarry Smith You can also run with the option -info and look for messages with the string 3151aa95bbe8SBarry Smith malloc in them to see if additional memory allocation was needed. 3152aa95bbe8SBarry Smith 3153273d9f13SBarry Smith Level: intermediate 3154273d9f13SBarry Smith 3155273d9f13SBarry Smith .keywords: matrix, block, aij, compressed row, sparse, parallel 3156273d9f13SBarry Smith 3157aac34f13SBarry Smith .seealso: MatCreate(), MatCreateSeqBAIJ(), MatSetValues(), MatCreateMPIBAIJ(), MatMPIBAIJSetPreallocationCSR() 3158273d9f13SBarry Smith @*/ 3159be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPIBAIJSetPreallocation(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[]) 3160273d9f13SBarry Smith { 3161b24ad042SBarry Smith PetscErrorCode ierr,(*f)(Mat,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[]); 3162273d9f13SBarry Smith 3163273d9f13SBarry Smith PetscFunctionBegin; 3164a23d5eceSKris Buschelman ierr = PetscObjectQueryFunction((PetscObject)B,"MatMPIBAIJSetPreallocation_C",(void (**)(void))&f);CHKERRQ(ierr); 3165a23d5eceSKris Buschelman if (f) { 3166a23d5eceSKris Buschelman ierr = (*f)(B,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr); 3167273d9f13SBarry Smith } 3168273d9f13SBarry Smith PetscFunctionReturn(0); 3169273d9f13SBarry Smith } 3170273d9f13SBarry Smith 31714a2ae208SSatish Balay #undef __FUNCT__ 31724a2ae208SSatish Balay #define __FUNCT__ "MatCreateMPIBAIJ" 317379bdfe76SSatish Balay /*@C 317479bdfe76SSatish Balay MatCreateMPIBAIJ - Creates a sparse parallel matrix in block AIJ format 317579bdfe76SSatish Balay (block compressed row). For good matrix assembly performance 317679bdfe76SSatish Balay the user should preallocate the matrix storage by setting the parameters 317779bdfe76SSatish Balay d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 317879bdfe76SSatish Balay performance can be increased by more than a factor of 50. 317979bdfe76SSatish Balay 3180db81eaa0SLois Curfman McInnes Collective on MPI_Comm 3181db81eaa0SLois Curfman McInnes 318279bdfe76SSatish Balay Input Parameters: 3183db81eaa0SLois Curfman McInnes + comm - MPI communicator 318479bdfe76SSatish Balay . bs - size of blockk 318579bdfe76SSatish Balay . m - number of local rows (or PETSC_DECIDE to have calculated if M is given) 318692e8d321SLois Curfman McInnes This value should be the same as the local size used in creating the 318792e8d321SLois Curfman McInnes y vector for the matrix-vector product y = Ax. 318892e8d321SLois Curfman McInnes . n - number of local columns (or PETSC_DECIDE to have calculated if N is given) 318992e8d321SLois Curfman McInnes This value should be the same as the local size used in creating the 319092e8d321SLois Curfman McInnes x vector for the matrix-vector product y = Ax. 3191be79a94dSBarry Smith . M - number of global rows (or PETSC_DETERMINE to have calculated if m is given) 3192be79a94dSBarry Smith . N - number of global columns (or PETSC_DETERMINE to have calculated if n is given) 319347a75d0bSBarry Smith . d_nz - number of nonzero blocks per block row in diagonal portion of local 319479bdfe76SSatish Balay submatrix (same for all local rows) 319547a75d0bSBarry Smith . d_nnz - array containing the number of nonzero blocks in the various block rows 319692e8d321SLois Curfman McInnes of the in diagonal portion of the local (possibly different for each block 3197db81eaa0SLois Curfman McInnes row) or PETSC_NULL. You must leave room for the diagonal entry even if it is zero. 319847a75d0bSBarry Smith . o_nz - number of nonzero blocks per block row in the off-diagonal portion of local 319979bdfe76SSatish Balay submatrix (same for all local rows). 320047a75d0bSBarry Smith - o_nnz - array containing the number of nonzero blocks in the various block rows of the 320192e8d321SLois Curfman McInnes off-diagonal portion of the local submatrix (possibly different for 320292e8d321SLois Curfman McInnes each block row) or PETSC_NULL. 320379bdfe76SSatish Balay 320479bdfe76SSatish Balay Output Parameter: 320579bdfe76SSatish Balay . A - the matrix 320679bdfe76SSatish Balay 3207db81eaa0SLois Curfman McInnes Options Database Keys: 32088c07d4e3SBarry Smith + -mat_block_size - size of the blocks to use 32098c07d4e3SBarry Smith - -mat_use_hash_table <fact> 32103ffaccefSLois Curfman McInnes 3211175b88e8SBarry Smith It is recommended that one use the MatCreate(), MatSetType() and/or MatSetFromOptions(), 3212ae1d86c5SBarry Smith MatXXXXSetPreallocation() paradgm instead of this routine directly. 3213175b88e8SBarry Smith [MatXXXXSetPreallocation() is, for example, MatSeqAIJSetPreallocation] 3214175b88e8SBarry Smith 3215b259b22eSLois Curfman McInnes Notes: 321649a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 321749a6f317SBarry Smith 321847a75d0bSBarry Smith A nonzero block is any block that as 1 or more nonzeros in it 321947a75d0bSBarry Smith 322079bdfe76SSatish Balay The user MUST specify either the local or global matrix dimensions 322179bdfe76SSatish Balay (possibly both). 322279bdfe76SSatish Balay 3223be79a94dSBarry Smith If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one processor 3224be79a94dSBarry Smith than it must be used on all processors that share the object for that argument. 3225be79a94dSBarry Smith 322679bdfe76SSatish Balay Storage Information: 322779bdfe76SSatish Balay For a square global matrix we define each processor's diagonal portion 322879bdfe76SSatish Balay to be its local rows and the corresponding columns (a square submatrix); 322979bdfe76SSatish Balay each processor's off-diagonal portion encompasses the remainder of the 323079bdfe76SSatish Balay local matrix (a rectangular submatrix). 323179bdfe76SSatish Balay 323279bdfe76SSatish Balay The user can specify preallocated storage for the diagonal part of 323379bdfe76SSatish Balay the local submatrix with either d_nz or d_nnz (not both). Set 323479bdfe76SSatish Balay d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic 323579bdfe76SSatish Balay memory allocation. Likewise, specify preallocated storage for the 323679bdfe76SSatish Balay off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 323779bdfe76SSatish Balay 323879bdfe76SSatish Balay Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 323979bdfe76SSatish Balay the figure below we depict these three local rows and all columns (0-11). 324079bdfe76SSatish Balay 3241db81eaa0SLois Curfman McInnes .vb 3242db81eaa0SLois Curfman McInnes 0 1 2 3 4 5 6 7 8 9 10 11 3243db81eaa0SLois Curfman McInnes ------------------- 3244db81eaa0SLois Curfman McInnes row 3 | o o o d d d o o o o o o 3245db81eaa0SLois Curfman McInnes row 4 | o o o d d d o o o o o o 3246db81eaa0SLois Curfman McInnes row 5 | o o o d d d o o o o o o 3247db81eaa0SLois Curfman McInnes ------------------- 3248db81eaa0SLois Curfman McInnes .ve 324979bdfe76SSatish Balay 325079bdfe76SSatish Balay Thus, any entries in the d locations are stored in the d (diagonal) 325179bdfe76SSatish Balay submatrix, and any entries in the o locations are stored in the 325279bdfe76SSatish Balay o (off-diagonal) submatrix. Note that the d and the o submatrices are 325357b952d6SSatish Balay stored simply in the MATSEQBAIJ format for compressed row storage. 325479bdfe76SSatish Balay 3255d64ed03dSBarry Smith Now d_nz should indicate the number of block nonzeros per row in the d matrix, 3256d64ed03dSBarry Smith and o_nz should indicate the number of block nonzeros per row in the o matrix. 325779bdfe76SSatish Balay In general, for PDE problems in which most nonzeros are near the diagonal, 325892e8d321SLois Curfman McInnes one expects d_nz >> o_nz. For large problems you MUST preallocate memory 325992e8d321SLois Curfman McInnes or you will get TERRIBLE performance; see the users' manual chapter on 32606da5968aSLois Curfman McInnes matrices. 326179bdfe76SSatish Balay 3262027ccd11SLois Curfman McInnes Level: intermediate 3263027ccd11SLois Curfman McInnes 326492e8d321SLois Curfman McInnes .keywords: matrix, block, aij, compressed row, sparse, parallel 326579bdfe76SSatish Balay 3266aac34f13SBarry Smith .seealso: MatCreate(), MatCreateSeqBAIJ(), MatSetValues(), MatCreateMPIBAIJ(), MatMPIBAIJSetPreallocation(), MatMPIBAIJSetPreallocationCSR() 326779bdfe76SSatish Balay @*/ 3268be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreateMPIBAIJ(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[],Mat *A) 326979bdfe76SSatish Balay { 32706849ba73SBarry Smith PetscErrorCode ierr; 3271b24ad042SBarry Smith PetscMPIInt size; 327279bdfe76SSatish Balay 3273d64ed03dSBarry Smith PetscFunctionBegin; 3274f69a0ea3SMatthew Knepley ierr = MatCreate(comm,A);CHKERRQ(ierr); 3275f69a0ea3SMatthew Knepley ierr = MatSetSizes(*A,m,n,M,N);CHKERRQ(ierr); 3276d132466eSBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 3277273d9f13SBarry Smith if (size > 1) { 3278273d9f13SBarry Smith ierr = MatSetType(*A,MATMPIBAIJ);CHKERRQ(ierr); 3279273d9f13SBarry Smith ierr = MatMPIBAIJSetPreallocation(*A,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr); 3280273d9f13SBarry Smith } else { 3281273d9f13SBarry Smith ierr = MatSetType(*A,MATSEQBAIJ);CHKERRQ(ierr); 3282273d9f13SBarry Smith ierr = MatSeqBAIJSetPreallocation(*A,bs,d_nz,d_nnz);CHKERRQ(ierr); 32833914022bSBarry Smith } 32843a40ed3dSBarry Smith PetscFunctionReturn(0); 328579bdfe76SSatish Balay } 3286026e39d0SSatish Balay 32874a2ae208SSatish Balay #undef __FUNCT__ 32884a2ae208SSatish Balay #define __FUNCT__ "MatDuplicate_MPIBAIJ" 32896849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIBAIJ(Mat matin,MatDuplicateOption cpvalues,Mat *newmat) 32900ac07820SSatish Balay { 32910ac07820SSatish Balay Mat mat; 32920ac07820SSatish Balay Mat_MPIBAIJ *a,*oldmat = (Mat_MPIBAIJ*)matin->data; 3293dfbe8321SBarry Smith PetscErrorCode ierr; 3294b24ad042SBarry Smith PetscInt len=0; 32950ac07820SSatish Balay 3296d64ed03dSBarry Smith PetscFunctionBegin; 32970ac07820SSatish Balay *newmat = 0; 32987adad957SLisandro Dalcin ierr = MatCreate(((PetscObject)matin)->comm,&mat);CHKERRQ(ierr); 3299d0f46423SBarry Smith ierr = MatSetSizes(mat,matin->rmap->n,matin->cmap->n,matin->rmap->N,matin->cmap->N);CHKERRQ(ierr); 33007adad957SLisandro Dalcin ierr = MatSetType(mat,((PetscObject)matin)->type_name);CHKERRQ(ierr); 33011d5dac46SHong Zhang ierr = PetscMemcpy(mat->ops,matin->ops,sizeof(struct _MatOps));CHKERRQ(ierr); 33027fff6886SHong Zhang 33034beb1cfeSHong Zhang mat->factor = matin->factor; 3304273d9f13SBarry Smith mat->preallocated = PETSC_TRUE; 33050ac07820SSatish Balay mat->assembled = PETSC_TRUE; 33067fff6886SHong Zhang mat->insertmode = NOT_SET_VALUES; 33077fff6886SHong Zhang 3308273d9f13SBarry Smith a = (Mat_MPIBAIJ*)mat->data; 3309d0f46423SBarry Smith mat->rmap->bs = matin->rmap->bs; 33100ac07820SSatish Balay a->bs2 = oldmat->bs2; 33110ac07820SSatish Balay a->mbs = oldmat->mbs; 33120ac07820SSatish Balay a->nbs = oldmat->nbs; 33130ac07820SSatish Balay a->Mbs = oldmat->Mbs; 33140ac07820SSatish Balay a->Nbs = oldmat->Nbs; 33150ac07820SSatish Balay 331626283091SBarry Smith ierr = PetscLayoutCopy(matin->rmap,&mat->rmap);CHKERRQ(ierr); 331726283091SBarry Smith ierr = PetscLayoutCopy(matin->cmap,&mat->cmap);CHKERRQ(ierr); 3318899cda47SBarry Smith 33190ac07820SSatish Balay a->size = oldmat->size; 33200ac07820SSatish Balay a->rank = oldmat->rank; 3321aef5e8e0SSatish Balay a->donotstash = oldmat->donotstash; 3322aef5e8e0SSatish Balay a->roworiented = oldmat->roworiented; 3323aef5e8e0SSatish Balay a->rowindices = 0; 33240ac07820SSatish Balay a->rowvalues = 0; 33250ac07820SSatish Balay a->getrowactive = PETSC_FALSE; 332630793edcSSatish Balay a->barray = 0; 3327899cda47SBarry Smith a->rstartbs = oldmat->rstartbs; 3328899cda47SBarry Smith a->rendbs = oldmat->rendbs; 3329899cda47SBarry Smith a->cstartbs = oldmat->cstartbs; 3330899cda47SBarry Smith a->cendbs = oldmat->cendbs; 33310ac07820SSatish Balay 3332133cdb44SSatish Balay /* hash table stuff */ 3333133cdb44SSatish Balay a->ht = 0; 3334133cdb44SSatish Balay a->hd = 0; 3335133cdb44SSatish Balay a->ht_size = 0; 3336133cdb44SSatish Balay a->ht_flag = oldmat->ht_flag; 333725fdafccSSatish Balay a->ht_fact = oldmat->ht_fact; 3338133cdb44SSatish Balay a->ht_total_ct = 0; 3339133cdb44SSatish Balay a->ht_insert_ct = 0; 3340133cdb44SSatish Balay 3341899cda47SBarry Smith ierr = PetscMemcpy(a->rangebs,oldmat->rangebs,(a->size+1)*sizeof(PetscInt));CHKERRQ(ierr); 33427adad957SLisandro Dalcin ierr = MatStashCreate_Private(((PetscObject)matin)->comm,1,&mat->stash);CHKERRQ(ierr); 3343d0f46423SBarry Smith ierr = MatStashCreate_Private(((PetscObject)matin)->comm,matin->rmap->bs,&mat->bstash);CHKERRQ(ierr); 33440ac07820SSatish Balay if (oldmat->colmap) { 3345aa482453SBarry Smith #if defined (PETSC_USE_CTABLE) 33460f5bd95cSBarry Smith ierr = PetscTableCreateCopy(oldmat->colmap,&a->colmap);CHKERRQ(ierr); 334748e59246SSatish Balay #else 3348b24ad042SBarry Smith ierr = PetscMalloc((a->Nbs)*sizeof(PetscInt),&a->colmap);CHKERRQ(ierr); 334952e6d16bSBarry Smith ierr = PetscLogObjectMemory(mat,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr); 3350b24ad042SBarry Smith ierr = PetscMemcpy(a->colmap,oldmat->colmap,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr); 335148e59246SSatish Balay #endif 33520ac07820SSatish Balay } else a->colmap = 0; 33534beb1cfeSHong Zhang 33540ac07820SSatish Balay if (oldmat->garray && (len = ((Mat_SeqBAIJ*)(oldmat->B->data))->nbs)) { 3355b24ad042SBarry Smith ierr = PetscMalloc(len*sizeof(PetscInt),&a->garray);CHKERRQ(ierr); 335652e6d16bSBarry Smith ierr = PetscLogObjectMemory(mat,len*sizeof(PetscInt));CHKERRQ(ierr); 3357b24ad042SBarry Smith ierr = PetscMemcpy(a->garray,oldmat->garray,len*sizeof(PetscInt));CHKERRQ(ierr); 33580ac07820SSatish Balay } else a->garray = 0; 33590ac07820SSatish Balay 33600ac07820SSatish Balay ierr = VecDuplicate(oldmat->lvec,&a->lvec);CHKERRQ(ierr); 336152e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->lvec);CHKERRQ(ierr); 33620ac07820SSatish Balay ierr = VecScatterCopy(oldmat->Mvctx,&a->Mvctx);CHKERRQ(ierr); 336352e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->Mvctx);CHKERRQ(ierr); 33647fff6886SHong Zhang 33652e8a6d31SBarry Smith ierr = MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr); 336652e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->A);CHKERRQ(ierr); 33672e8a6d31SBarry Smith ierr = MatDuplicate(oldmat->B,cpvalues,&a->B);CHKERRQ(ierr); 336852e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->B);CHKERRQ(ierr); 33697adad957SLisandro Dalcin ierr = PetscFListDuplicate(((PetscObject)matin)->qlist,&((PetscObject)mat)->qlist);CHKERRQ(ierr); 33700ac07820SSatish Balay *newmat = mat; 33714beb1cfeSHong Zhang 33723a40ed3dSBarry Smith PetscFunctionReturn(0); 33730ac07820SSatish Balay } 337457b952d6SSatish Balay 3375e090d566SSatish Balay #include "petscsys.h" 337657b952d6SSatish Balay 33774a2ae208SSatish Balay #undef __FUNCT__ 33784a2ae208SSatish Balay #define __FUNCT__ "MatLoad_MPIBAIJ" 3379a313700dSBarry Smith PetscErrorCode MatLoad_MPIBAIJ(PetscViewer viewer, const MatType type,Mat *newmat) 338057b952d6SSatish Balay { 338157b952d6SSatish Balay Mat A; 33826849ba73SBarry Smith PetscErrorCode ierr; 3383b24ad042SBarry Smith int fd; 3384b24ad042SBarry Smith PetscInt i,nz,j,rstart,rend; 338587828ca2SBarry Smith PetscScalar *vals,*buf; 338657b952d6SSatish Balay MPI_Comm comm = ((PetscObject)viewer)->comm; 338757b952d6SSatish Balay MPI_Status status; 3388b24ad042SBarry Smith PetscMPIInt rank,size,maxnz; 3389b24ad042SBarry Smith PetscInt header[4],*rowlengths = 0,M,N,m,*rowners,*cols; 3390910ba992SMatthew Knepley PetscInt *locrowlens = PETSC_NULL,*procsnz = PETSC_NULL,*browners = PETSC_NULL; 3391167e7480SBarry Smith PetscInt jj,*mycols,*ibuf,bs=1,Mbs,mbs,extra_rows,mmax; 3392dc231df0SBarry Smith PetscMPIInt tag = ((PetscObject)viewer)->tag; 3393910ba992SMatthew Knepley PetscInt *dlens = PETSC_NULL,*odlens = PETSC_NULL,*mask = PETSC_NULL,*masked1 = PETSC_NULL,*masked2 = PETSC_NULL,rowcount,odcount; 3394dc231df0SBarry Smith PetscInt dcount,kmax,k,nzcount,tmp,mend; 339557b952d6SSatish Balay 3396d64ed03dSBarry Smith PetscFunctionBegin; 339777925062SSatish Balay ierr = PetscOptionsBegin(comm,PETSC_NULL,"Options for loading MPIBAIJ matrix 2","Mat");CHKERRQ(ierr); 33988c07d4e3SBarry Smith ierr = PetscOptionsInt("-matload_block_size","Set the blocksize used to store the matrix","MatLoad",bs,&bs,PETSC_NULL);CHKERRQ(ierr); 33998c07d4e3SBarry Smith ierr = PetscOptionsEnd();CHKERRQ(ierr); 340057b952d6SSatish Balay 3401d132466eSBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 3402d132466eSBarry Smith ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 340357b952d6SSatish Balay if (!rank) { 3404b0a32e0cSBarry Smith ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr); 3405e5638eb3SBarry Smith ierr = PetscBinaryRead(fd,(char *)header,4,PETSC_INT);CHKERRQ(ierr); 3406552e946dSBarry Smith if (header[0] != MAT_FILE_COOKIE) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"not matrix object"); 34076c5fab8fSBarry Smith } 3408d64ed03dSBarry Smith 3409b24ad042SBarry Smith ierr = MPI_Bcast(header+1,3,MPIU_INT,0,comm);CHKERRQ(ierr); 341057b952d6SSatish Balay M = header[1]; N = header[2]; 341157b952d6SSatish Balay 341229bbc08cSBarry Smith if (M != N) SETERRQ(PETSC_ERR_SUP,"Can only do square matrices"); 341357b952d6SSatish Balay 341457b952d6SSatish Balay /* 341557b952d6SSatish Balay This code adds extra rows to make sure the number of rows is 341657b952d6SSatish Balay divisible by the blocksize 341757b952d6SSatish Balay */ 341857b952d6SSatish Balay Mbs = M/bs; 3419dc231df0SBarry Smith extra_rows = bs - M + bs*Mbs; 342057b952d6SSatish Balay if (extra_rows == bs) extra_rows = 0; 342157b952d6SSatish Balay else Mbs++; 342257b952d6SSatish Balay if (extra_rows && !rank) { 34231e2582c4SBarry Smith ierr = PetscInfo(viewer,"Padding loaded matrix to match blocksize\n");CHKERRQ(ierr); 342457b952d6SSatish Balay } 3425537820f0SBarry Smith 342657b952d6SSatish Balay /* determine ownership of all rows */ 342757b952d6SSatish Balay mbs = Mbs/size + ((Mbs % size) > rank); 342857b952d6SSatish Balay m = mbs*bs; 3429dc231df0SBarry Smith ierr = PetscMalloc2(size+1,PetscInt,&rowners,size+1,PetscInt,&browners);CHKERRQ(ierr); 3430b24ad042SBarry Smith ierr = MPI_Allgather(&mbs,1,MPIU_INT,rowners+1,1,MPIU_INT,comm);CHKERRQ(ierr); 3431167e7480SBarry Smith 3432167e7480SBarry Smith /* process 0 needs enough room for process with most rows */ 3433167e7480SBarry Smith if (!rank) { 3434167e7480SBarry Smith mmax = rowners[1]; 3435167e7480SBarry Smith for (i=2; i<size; i++) { 3436167e7480SBarry Smith mmax = PetscMax(mmax,rowners[i]); 3437167e7480SBarry Smith } 3438ca02efcfSSatish Balay mmax*=bs; 3439167e7480SBarry Smith } else mmax = m; 3440167e7480SBarry Smith 344157b952d6SSatish Balay rowners[0] = 0; 3442cee3aa6bSSatish Balay for (i=2; i<=size; i++) rowners[i] += rowners[i-1]; 3443cee3aa6bSSatish Balay for (i=0; i<=size; i++) browners[i] = rowners[i]*bs; 344457b952d6SSatish Balay rstart = rowners[rank]; 344557b952d6SSatish Balay rend = rowners[rank+1]; 344657b952d6SSatish Balay 344757b952d6SSatish Balay /* distribute row lengths to all processors */ 344819c38ff2SBarry Smith ierr = PetscMalloc((mmax+1)*sizeof(PetscInt),&locrowlens);CHKERRQ(ierr); 344957b952d6SSatish Balay if (!rank) { 3450dc231df0SBarry Smith mend = m; 3451dc231df0SBarry Smith if (size == 1) mend = mend - extra_rows; 3452dc231df0SBarry Smith ierr = PetscBinaryRead(fd,locrowlens,mend,PETSC_INT);CHKERRQ(ierr); 3453dc231df0SBarry Smith for (j=mend; j<m; j++) locrowlens[j] = 1; 3454dc231df0SBarry Smith ierr = PetscMalloc(m*sizeof(PetscInt),&rowlengths);CHKERRQ(ierr); 3455b24ad042SBarry Smith ierr = PetscMalloc(size*sizeof(PetscInt),&procsnz);CHKERRQ(ierr); 3456b24ad042SBarry Smith ierr = PetscMemzero(procsnz,size*sizeof(PetscInt));CHKERRQ(ierr); 3457dc231df0SBarry Smith for (j=0; j<m; j++) { 3458dc231df0SBarry Smith procsnz[0] += locrowlens[j]; 3459dc231df0SBarry Smith } 3460dc231df0SBarry Smith for (i=1; i<size; i++) { 3461dc231df0SBarry Smith mend = browners[i+1] - browners[i]; 3462dc231df0SBarry Smith if (i == size-1) mend = mend - extra_rows; 3463dc231df0SBarry Smith ierr = PetscBinaryRead(fd,rowlengths,mend,PETSC_INT);CHKERRQ(ierr); 3464dc231df0SBarry Smith for (j=mend; j<browners[i+1] - browners[i]; j++) rowlengths[j] = 1; 3465dc231df0SBarry Smith /* calculate the number of nonzeros on each processor */ 3466dc231df0SBarry Smith for (j=0; j<browners[i+1]-browners[i]; j++) { 346757b952d6SSatish Balay procsnz[i] += rowlengths[j]; 346857b952d6SSatish Balay } 3469dc231df0SBarry Smith ierr = MPI_Send(rowlengths,browners[i+1]-browners[i],MPIU_INT,i,tag,comm);CHKERRQ(ierr); 347057b952d6SSatish Balay } 3471606d414cSSatish Balay ierr = PetscFree(rowlengths);CHKERRQ(ierr); 3472dc231df0SBarry Smith } else { 3473dc231df0SBarry Smith ierr = MPI_Recv(locrowlens,m,MPIU_INT,0,tag,comm,&status);CHKERRQ(ierr); 3474dc231df0SBarry Smith } 347557b952d6SSatish Balay 3476dc231df0SBarry Smith if (!rank) { 347757b952d6SSatish Balay /* determine max buffer needed and allocate it */ 34788a8e0b3aSBarry Smith maxnz = procsnz[0]; 3479cdc0ba36SBarry Smith for (i=1; i<size; i++) { 348057b952d6SSatish Balay maxnz = PetscMax(maxnz,procsnz[i]); 348157b952d6SSatish Balay } 3482b24ad042SBarry Smith ierr = PetscMalloc(maxnz*sizeof(PetscInt),&cols);CHKERRQ(ierr); 348357b952d6SSatish Balay 348457b952d6SSatish Balay /* read in my part of the matrix column indices */ 348557b952d6SSatish Balay nz = procsnz[0]; 348619c38ff2SBarry Smith ierr = PetscMalloc((nz+1)*sizeof(PetscInt),&ibuf);CHKERRQ(ierr); 348757b952d6SSatish Balay mycols = ibuf; 3488cee3aa6bSSatish Balay if (size == 1) nz -= extra_rows; 3489e5638eb3SBarry Smith ierr = PetscBinaryRead(fd,mycols,nz,PETSC_INT);CHKERRQ(ierr); 3490cee3aa6bSSatish Balay if (size == 1) for (i=0; i< extra_rows; i++) { mycols[nz+i] = M+i; } 3491cee3aa6bSSatish Balay 349257b952d6SSatish Balay /* read in every ones (except the last) and ship off */ 349357b952d6SSatish Balay for (i=1; i<size-1; i++) { 349457b952d6SSatish Balay nz = procsnz[i]; 3495e5638eb3SBarry Smith ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr); 3496b24ad042SBarry Smith ierr = MPI_Send(cols,nz,MPIU_INT,i,tag,comm);CHKERRQ(ierr); 349757b952d6SSatish Balay } 349857b952d6SSatish Balay /* read in the stuff for the last proc */ 349957b952d6SSatish Balay if (size != 1) { 350057b952d6SSatish Balay nz = procsnz[size-1] - extra_rows; /* the extra rows are not on the disk */ 3501e5638eb3SBarry Smith ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr); 350257b952d6SSatish Balay for (i=0; i<extra_rows; i++) cols[nz+i] = M+i; 3503b24ad042SBarry Smith ierr = MPI_Send(cols,nz+extra_rows,MPIU_INT,size-1,tag,comm);CHKERRQ(ierr); 350457b952d6SSatish Balay } 3505606d414cSSatish Balay ierr = PetscFree(cols);CHKERRQ(ierr); 3506d64ed03dSBarry Smith } else { 350757b952d6SSatish Balay /* determine buffer space needed for message */ 350857b952d6SSatish Balay nz = 0; 350957b952d6SSatish Balay for (i=0; i<m; i++) { 351057b952d6SSatish Balay nz += locrowlens[i]; 351157b952d6SSatish Balay } 351219c38ff2SBarry Smith ierr = PetscMalloc((nz+1)*sizeof(PetscInt),&ibuf);CHKERRQ(ierr); 351357b952d6SSatish Balay mycols = ibuf; 351457b952d6SSatish Balay /* receive message of column indices*/ 3515b24ad042SBarry Smith ierr = MPI_Recv(mycols,nz,MPIU_INT,0,tag,comm,&status);CHKERRQ(ierr); 3516b24ad042SBarry Smith ierr = MPI_Get_count(&status,MPIU_INT,&maxnz);CHKERRQ(ierr); 351729bbc08cSBarry Smith if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 351857b952d6SSatish Balay } 351957b952d6SSatish Balay 352057b952d6SSatish Balay /* loop over local rows, determining number of off diagonal entries */ 3521dc231df0SBarry Smith ierr = PetscMalloc2(rend-rstart,PetscInt,&dlens,rend-rstart,PetscInt,&odlens);CHKERRQ(ierr); 3522dc231df0SBarry Smith ierr = PetscMalloc3(Mbs,PetscInt,&mask,Mbs,PetscInt,&masked1,Mbs,PetscInt,&masked2);CHKERRQ(ierr); 3523dc231df0SBarry Smith ierr = PetscMemzero(mask,Mbs*sizeof(PetscInt));CHKERRQ(ierr); 3524dc231df0SBarry Smith ierr = PetscMemzero(masked1,Mbs*sizeof(PetscInt));CHKERRQ(ierr); 3525dc231df0SBarry Smith ierr = PetscMemzero(masked2,Mbs*sizeof(PetscInt));CHKERRQ(ierr); 352657b952d6SSatish Balay rowcount = 0; nzcount = 0; 352757b952d6SSatish Balay for (i=0; i<mbs; i++) { 352857b952d6SSatish Balay dcount = 0; 352957b952d6SSatish Balay odcount = 0; 353057b952d6SSatish Balay for (j=0; j<bs; j++) { 353157b952d6SSatish Balay kmax = locrowlens[rowcount]; 353257b952d6SSatish Balay for (k=0; k<kmax; k++) { 353357b952d6SSatish Balay tmp = mycols[nzcount++]/bs; 353457b952d6SSatish Balay if (!mask[tmp]) { 353557b952d6SSatish Balay mask[tmp] = 1; 353657b952d6SSatish Balay if (tmp < rstart || tmp >= rend) masked2[odcount++] = tmp; 353757b952d6SSatish Balay else masked1[dcount++] = tmp; 353857b952d6SSatish Balay } 353957b952d6SSatish Balay } 354057b952d6SSatish Balay rowcount++; 354157b952d6SSatish Balay } 3542cee3aa6bSSatish Balay 354357b952d6SSatish Balay dlens[i] = dcount; 354457b952d6SSatish Balay odlens[i] = odcount; 3545cee3aa6bSSatish Balay 354657b952d6SSatish Balay /* zero out the mask elements we set */ 354757b952d6SSatish Balay for (j=0; j<dcount; j++) mask[masked1[j]] = 0; 354857b952d6SSatish Balay for (j=0; j<odcount; j++) mask[masked2[j]] = 0; 354957b952d6SSatish Balay } 3550cee3aa6bSSatish Balay 355157b952d6SSatish Balay /* create our matrix */ 3552f69a0ea3SMatthew Knepley ierr = MatCreate(comm,&A);CHKERRQ(ierr); 3553f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,m,m,M+extra_rows,N+extra_rows);CHKERRQ(ierr); 355478ae41b4SKris Buschelman ierr = MatSetType(A,type);CHKERRQ(ierr) 355578ae41b4SKris Buschelman ierr = MatMPIBAIJSetPreallocation(A,bs,0,dlens,0,odlens);CHKERRQ(ierr); 355678ae41b4SKris Buschelman 355757b952d6SSatish Balay if (!rank) { 355819c38ff2SBarry Smith ierr = PetscMalloc((maxnz+1)*sizeof(PetscScalar),&buf);CHKERRQ(ierr); 355957b952d6SSatish Balay /* read in my part of the matrix numerical values */ 356057b952d6SSatish Balay nz = procsnz[0]; 356157b952d6SSatish Balay vals = buf; 3562cee3aa6bSSatish Balay mycols = ibuf; 3563cee3aa6bSSatish Balay if (size == 1) nz -= extra_rows; 3564e5638eb3SBarry Smith ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 3565cee3aa6bSSatish Balay if (size == 1) for (i=0; i< extra_rows; i++) { vals[nz+i] = 1.0; } 3566537820f0SBarry Smith 356757b952d6SSatish Balay /* insert into matrix */ 356857b952d6SSatish Balay jj = rstart*bs; 356957b952d6SSatish Balay for (i=0; i<m; i++) { 3570dc231df0SBarry Smith ierr = MatSetValues_MPIBAIJ(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr); 357157b952d6SSatish Balay mycols += locrowlens[i]; 357257b952d6SSatish Balay vals += locrowlens[i]; 357357b952d6SSatish Balay jj++; 357457b952d6SSatish Balay } 357557b952d6SSatish Balay /* read in other processors (except the last one) and ship out */ 357657b952d6SSatish Balay for (i=1; i<size-1; i++) { 357757b952d6SSatish Balay nz = procsnz[i]; 357857b952d6SSatish Balay vals = buf; 3579e5638eb3SBarry Smith ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 35807adad957SLisandro Dalcin ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,((PetscObject)A)->tag,comm);CHKERRQ(ierr); 358157b952d6SSatish Balay } 358257b952d6SSatish Balay /* the last proc */ 358357b952d6SSatish Balay if (size != 1){ 358457b952d6SSatish Balay nz = procsnz[i] - extra_rows; 3585cee3aa6bSSatish Balay vals = buf; 3586e5638eb3SBarry Smith ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 358757b952d6SSatish Balay for (i=0; i<extra_rows; i++) vals[nz+i] = 1.0; 35887adad957SLisandro Dalcin ierr = MPI_Send(vals,nz+extra_rows,MPIU_SCALAR,size-1,((PetscObject)A)->tag,comm);CHKERRQ(ierr); 358957b952d6SSatish Balay } 3590606d414cSSatish Balay ierr = PetscFree(procsnz);CHKERRQ(ierr); 3591d64ed03dSBarry Smith } else { 359257b952d6SSatish Balay /* receive numeric values */ 359319c38ff2SBarry Smith ierr = PetscMalloc((nz+1)*sizeof(PetscScalar),&buf);CHKERRQ(ierr); 359457b952d6SSatish Balay 359557b952d6SSatish Balay /* receive message of values*/ 359657b952d6SSatish Balay vals = buf; 3597cee3aa6bSSatish Balay mycols = ibuf; 35987adad957SLisandro Dalcin ierr = MPI_Recv(vals,nz,MPIU_SCALAR,0,((PetscObject)A)->tag,comm,&status);CHKERRQ(ierr); 3599ca161407SBarry Smith ierr = MPI_Get_count(&status,MPIU_SCALAR,&maxnz);CHKERRQ(ierr); 360029bbc08cSBarry Smith if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 360157b952d6SSatish Balay 360257b952d6SSatish Balay /* insert into matrix */ 360357b952d6SSatish Balay jj = rstart*bs; 3604cee3aa6bSSatish Balay for (i=0; i<m; i++) { 3605dc231df0SBarry Smith ierr = MatSetValues_MPIBAIJ(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr); 360657b952d6SSatish Balay mycols += locrowlens[i]; 360757b952d6SSatish Balay vals += locrowlens[i]; 360857b952d6SSatish Balay jj++; 360957b952d6SSatish Balay } 361057b952d6SSatish Balay } 3611606d414cSSatish Balay ierr = PetscFree(locrowlens);CHKERRQ(ierr); 3612606d414cSSatish Balay ierr = PetscFree(buf);CHKERRQ(ierr); 3613606d414cSSatish Balay ierr = PetscFree(ibuf);CHKERRQ(ierr); 3614dc231df0SBarry Smith ierr = PetscFree2(rowners,browners);CHKERRQ(ierr); 3615dc231df0SBarry Smith ierr = PetscFree2(dlens,odlens);CHKERRQ(ierr); 3616dc231df0SBarry Smith ierr = PetscFree3(mask,masked1,masked2);CHKERRQ(ierr); 36176d4a8577SBarry Smith ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 36186d4a8577SBarry Smith ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 361978ae41b4SKris Buschelman 362078ae41b4SKris Buschelman *newmat = A; 36213a40ed3dSBarry Smith PetscFunctionReturn(0); 362257b952d6SSatish Balay } 362357b952d6SSatish Balay 36244a2ae208SSatish Balay #undef __FUNCT__ 36254a2ae208SSatish Balay #define __FUNCT__ "MatMPIBAIJSetHashTableFactor" 3626133cdb44SSatish Balay /*@ 3627133cdb44SSatish Balay MatMPIBAIJSetHashTableFactor - Sets the factor required to compute the size of the HashTable. 3628133cdb44SSatish Balay 3629133cdb44SSatish Balay Input Parameters: 3630133cdb44SSatish Balay . mat - the matrix 3631133cdb44SSatish Balay . fact - factor 3632133cdb44SSatish Balay 3633fee21e36SBarry Smith Collective on Mat 3634fee21e36SBarry Smith 36358c890885SBarry Smith Level: advanced 36368c890885SBarry Smith 3637133cdb44SSatish Balay Notes: 36388c07d4e3SBarry Smith This can also be set by the command line option: -mat_use_hash_table <fact> 3639133cdb44SSatish Balay 3640133cdb44SSatish Balay .keywords: matrix, hashtable, factor, HT 3641133cdb44SSatish Balay 3642133cdb44SSatish Balay .seealso: MatSetOption() 3643133cdb44SSatish Balay @*/ 3644be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPIBAIJSetHashTableFactor(Mat mat,PetscReal fact) 3645133cdb44SSatish Balay { 3646dfbe8321SBarry Smith PetscErrorCode ierr,(*f)(Mat,PetscReal); 36475bf65638SKris Buschelman 36485bf65638SKris Buschelman PetscFunctionBegin; 36495bf65638SKris Buschelman ierr = PetscObjectQueryFunction((PetscObject)mat,"MatSetHashTableFactor_C",(void (**)(void))&f);CHKERRQ(ierr); 36505bf65638SKris Buschelman if (f) { 36515bf65638SKris Buschelman ierr = (*f)(mat,fact);CHKERRQ(ierr); 36525bf65638SKris Buschelman } 36535bf65638SKris Buschelman PetscFunctionReturn(0); 36545bf65638SKris Buschelman } 36555bf65638SKris Buschelman 3656be1d678aSKris Buschelman EXTERN_C_BEGIN 36575bf65638SKris Buschelman #undef __FUNCT__ 36585bf65638SKris Buschelman #define __FUNCT__ "MatSetHashTableFactor_MPIBAIJ" 3659be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatSetHashTableFactor_MPIBAIJ(Mat mat,PetscReal fact) 36605bf65638SKris Buschelman { 366125fdafccSSatish Balay Mat_MPIBAIJ *baij; 3662133cdb44SSatish Balay 3663133cdb44SSatish Balay PetscFunctionBegin; 3664133cdb44SSatish Balay baij = (Mat_MPIBAIJ*)mat->data; 3665133cdb44SSatish Balay baij->ht_fact = fact; 3666133cdb44SSatish Balay PetscFunctionReturn(0); 3667133cdb44SSatish Balay } 3668be1d678aSKris Buschelman EXTERN_C_END 3669f2a5309cSSatish Balay 36704a2ae208SSatish Balay #undef __FUNCT__ 36714a2ae208SSatish Balay #define __FUNCT__ "MatMPIBAIJGetSeqBAIJ" 3672be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPIBAIJGetSeqBAIJ(Mat A,Mat *Ad,Mat *Ao,PetscInt *colmap[]) 3673f2a5309cSSatish Balay { 3674f2a5309cSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 3675f2a5309cSSatish Balay PetscFunctionBegin; 3676f2a5309cSSatish Balay *Ad = a->A; 3677f2a5309cSSatish Balay *Ao = a->B; 3678195d93cdSBarry Smith *colmap = a->garray; 3679f2a5309cSSatish Balay PetscFunctionReturn(0); 3680f2a5309cSSatish Balay } 368185535b8eSBarry Smith 368285535b8eSBarry Smith /* 368385535b8eSBarry Smith Special version for direct calls from Fortran (to eliminate two function call overheads 368485535b8eSBarry Smith */ 368585535b8eSBarry Smith #if defined(PETSC_HAVE_FORTRAN_CAPS) 368685535b8eSBarry Smith #define matmpibaijsetvaluesblocked_ MATMPIBAIJSETVALUESBLOCKED 368785535b8eSBarry Smith #elif !defined(PETSC_HAVE_FORTRAN_UNDERSCORE) 368885535b8eSBarry Smith #define matmpibaijsetvaluesblocked_ matmpibaijsetvaluesblocked 368985535b8eSBarry Smith #endif 369085535b8eSBarry Smith 369185535b8eSBarry Smith #undef __FUNCT__ 369285535b8eSBarry Smith #define __FUNCT__ "matmpibiajsetvaluesblocked" 369385535b8eSBarry Smith /*@C 369485535b8eSBarry Smith MatMPIBAIJSetValuesBlocked - Direct Fortran call to replace call to MatSetValuesBlocked() 369585535b8eSBarry Smith 369685535b8eSBarry Smith Collective on Mat 369785535b8eSBarry Smith 369885535b8eSBarry Smith Input Parameters: 369985535b8eSBarry Smith + mat - the matrix 370085535b8eSBarry Smith . min - number of input rows 370185535b8eSBarry Smith . im - input rows 370285535b8eSBarry Smith . nin - number of input columns 370385535b8eSBarry Smith . in - input columns 370485535b8eSBarry Smith . v - numerical values input 370585535b8eSBarry Smith - addvin - INSERT_VALUES or ADD_VALUES 370685535b8eSBarry Smith 370785535b8eSBarry Smith Notes: This has a complete copy of MatSetValuesBlocked_MPIBAIJ() which is terrible code un-reuse. 370885535b8eSBarry Smith 370985535b8eSBarry Smith Level: advanced 371085535b8eSBarry Smith 371185535b8eSBarry Smith .seealso: MatSetValuesBlocked() 371285535b8eSBarry Smith @*/ 371385535b8eSBarry Smith PetscErrorCode matmpibaijsetvaluesblocked_(Mat *matin,PetscInt *min,const PetscInt im[],PetscInt *nin,const PetscInt in[],const MatScalar v[],InsertMode *addvin) 371485535b8eSBarry Smith { 371585535b8eSBarry Smith /* convert input arguments to C version */ 371685535b8eSBarry Smith Mat mat = *matin; 371785535b8eSBarry Smith PetscInt m = *min, n = *nin; 371885535b8eSBarry Smith InsertMode addv = *addvin; 371985535b8eSBarry Smith 372085535b8eSBarry Smith Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 372185535b8eSBarry Smith const MatScalar *value; 372285535b8eSBarry Smith MatScalar *barray=baij->barray; 372385535b8eSBarry Smith PetscTruth roworiented = baij->roworiented; 372485535b8eSBarry Smith PetscErrorCode ierr; 372585535b8eSBarry Smith PetscInt i,j,ii,jj,row,col,rstart=baij->rstartbs; 372685535b8eSBarry Smith PetscInt rend=baij->rendbs,cstart=baij->cstartbs,stepval; 3727d0f46423SBarry Smith PetscInt cend=baij->cendbs,bs=mat->rmap->bs,bs2=baij->bs2; 372885535b8eSBarry Smith 372985535b8eSBarry Smith PetscFunctionBegin; 373085535b8eSBarry Smith /* tasks normally handled by MatSetValuesBlocked() */ 373185535b8eSBarry Smith if (mat->insertmode == NOT_SET_VALUES) { 373285535b8eSBarry Smith mat->insertmode = addv; 373385535b8eSBarry Smith } 373485535b8eSBarry Smith #if defined(PETSC_USE_DEBUG) 373585535b8eSBarry Smith else if (mat->insertmode != addv) { 373685535b8eSBarry Smith SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Cannot mix add values and insert values"); 373785535b8eSBarry Smith } 373885535b8eSBarry Smith if (mat->factor) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Not for factored matrix"); 373985535b8eSBarry Smith #endif 374085535b8eSBarry Smith if (mat->assembled) { 374185535b8eSBarry Smith mat->was_assembled = PETSC_TRUE; 374285535b8eSBarry Smith mat->assembled = PETSC_FALSE; 374385535b8eSBarry Smith } 374485535b8eSBarry Smith ierr = PetscLogEventBegin(MAT_SetValues,mat,0,0,0);CHKERRQ(ierr); 374585535b8eSBarry Smith 374685535b8eSBarry Smith 374785535b8eSBarry Smith if(!barray) { 374885535b8eSBarry Smith ierr = PetscMalloc(bs2*sizeof(MatScalar),&barray);CHKERRQ(ierr); 374985535b8eSBarry Smith baij->barray = barray; 375085535b8eSBarry Smith } 375185535b8eSBarry Smith 375285535b8eSBarry Smith if (roworiented) { 375385535b8eSBarry Smith stepval = (n-1)*bs; 375485535b8eSBarry Smith } else { 375585535b8eSBarry Smith stepval = (m-1)*bs; 375685535b8eSBarry Smith } 375785535b8eSBarry Smith for (i=0; i<m; i++) { 375885535b8eSBarry Smith if (im[i] < 0) continue; 375985535b8eSBarry Smith #if defined(PETSC_USE_DEBUG) 376085535b8eSBarry Smith if (im[i] >= baij->Mbs) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large, row %D max %D",im[i],baij->Mbs-1); 376185535b8eSBarry Smith #endif 376285535b8eSBarry Smith if (im[i] >= rstart && im[i] < rend) { 376385535b8eSBarry Smith row = im[i] - rstart; 376485535b8eSBarry Smith for (j=0; j<n; j++) { 376585535b8eSBarry Smith /* If NumCol = 1 then a copy is not required */ 376685535b8eSBarry Smith if ((roworiented) && (n == 1)) { 376785535b8eSBarry Smith barray = (MatScalar*)v + i*bs2; 376885535b8eSBarry Smith } else if((!roworiented) && (m == 1)) { 376985535b8eSBarry Smith barray = (MatScalar*)v + j*bs2; 377085535b8eSBarry Smith } else { /* Here a copy is required */ 377185535b8eSBarry Smith if (roworiented) { 377285535b8eSBarry Smith value = v + i*(stepval+bs)*bs + j*bs; 377385535b8eSBarry Smith } else { 377485535b8eSBarry Smith value = v + j*(stepval+bs)*bs + i*bs; 377585535b8eSBarry Smith } 377685535b8eSBarry Smith for (ii=0; ii<bs; ii++,value+=stepval) { 377785535b8eSBarry Smith for (jj=0; jj<bs; jj++) { 377885535b8eSBarry Smith *barray++ = *value++; 377985535b8eSBarry Smith } 378085535b8eSBarry Smith } 378185535b8eSBarry Smith barray -=bs2; 378285535b8eSBarry Smith } 378385535b8eSBarry Smith 378485535b8eSBarry Smith if (in[j] >= cstart && in[j] < cend){ 378585535b8eSBarry Smith col = in[j] - cstart; 378697e5c40aSBarry Smith ierr = MatSetValuesBlocked_SeqBAIJ(baij->A,1,&row,1,&col,barray,addv);CHKERRQ(ierr); 378785535b8eSBarry Smith } 378885535b8eSBarry Smith else if (in[j] < 0) continue; 378985535b8eSBarry Smith #if defined(PETSC_USE_DEBUG) 379085535b8eSBarry Smith else if (in[j] >= baij->Nbs) {SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large, col %D max %D",in[j],baij->Nbs-1);} 379185535b8eSBarry Smith #endif 379285535b8eSBarry Smith else { 379385535b8eSBarry Smith if (mat->was_assembled) { 379485535b8eSBarry Smith if (!baij->colmap) { 379585535b8eSBarry Smith ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 379685535b8eSBarry Smith } 379785535b8eSBarry Smith 379885535b8eSBarry Smith #if defined(PETSC_USE_DEBUG) 379985535b8eSBarry Smith #if defined (PETSC_USE_CTABLE) 380085535b8eSBarry Smith { PetscInt data; 380185535b8eSBarry Smith ierr = PetscTableFind(baij->colmap,in[j]+1,&data);CHKERRQ(ierr); 380285535b8eSBarry Smith if ((data - 1) % bs) SETERRQ(PETSC_ERR_PLIB,"Incorrect colmap"); 380385535b8eSBarry Smith } 380485535b8eSBarry Smith #else 380585535b8eSBarry Smith if ((baij->colmap[in[j]] - 1) % bs) SETERRQ(PETSC_ERR_PLIB,"Incorrect colmap"); 380685535b8eSBarry Smith #endif 380785535b8eSBarry Smith #endif 380885535b8eSBarry Smith #if defined (PETSC_USE_CTABLE) 380985535b8eSBarry Smith ierr = PetscTableFind(baij->colmap,in[j]+1,&col);CHKERRQ(ierr); 381085535b8eSBarry Smith col = (col - 1)/bs; 381185535b8eSBarry Smith #else 381285535b8eSBarry Smith col = (baij->colmap[in[j]] - 1)/bs; 381385535b8eSBarry Smith #endif 381485535b8eSBarry Smith if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) { 381585535b8eSBarry Smith ierr = DisAssemble_MPIBAIJ(mat);CHKERRQ(ierr); 381685535b8eSBarry Smith col = in[j]; 381785535b8eSBarry Smith } 381885535b8eSBarry Smith } 381985535b8eSBarry Smith else col = in[j]; 382097e5c40aSBarry Smith ierr = MatSetValuesBlocked_SeqBAIJ(baij->B,1,&row,1,&col,barray,addv);CHKERRQ(ierr); 382185535b8eSBarry Smith } 382285535b8eSBarry Smith } 382385535b8eSBarry Smith } else { 382485535b8eSBarry Smith if (!baij->donotstash) { 382585535b8eSBarry Smith if (roworiented) { 382685535b8eSBarry Smith ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 382785535b8eSBarry Smith } else { 382885535b8eSBarry Smith ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 382985535b8eSBarry Smith } 383085535b8eSBarry Smith } 383185535b8eSBarry Smith } 383285535b8eSBarry Smith } 383385535b8eSBarry Smith 383485535b8eSBarry Smith /* task normally handled by MatSetValuesBlocked() */ 383585535b8eSBarry Smith ierr = PetscLogEventEnd(MAT_SetValues,mat,0,0,0);CHKERRQ(ierr); 383685535b8eSBarry Smith PetscFunctionReturn(0); 383785535b8eSBarry Smith } 3838