xref: /petsc/src/mat/impls/baij/mpi/mpibaij.c (revision 888c827cec923cebb7f4d355e4d985c1818c0baa)
1c6db04a5SJed Brown #include <../src/mat/impls/baij/mpi/mpibaij.h> /*I  "petscmat.h"  I*/
2c5d9258eSSatish Balay 
3b51a4376SLisandro Dalcin #include <petsc/private/hashseti.h>
4c6db04a5SJed Brown #include <petscblaslapack.h>
565a92638SMatthew G. Knepley #include <petscsf.h>
679bdfe76SSatish Balay 
766976f2fSJacob Faibussowitsch static PetscErrorCode MatDestroy_MPIBAIJ(Mat mat)
826cec326SBarry Smith {
926cec326SBarry Smith   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data;
1026cec326SBarry Smith 
1126cec326SBarry Smith   PetscFunctionBegin;
1226cec326SBarry Smith   PetscCall(PetscLogObjectState((PetscObject)mat, "Rows=%" PetscInt_FMT ",Cols=%" PetscInt_FMT, mat->rmap->N, mat->cmap->N));
1326cec326SBarry Smith   PetscCall(MatStashDestroy_Private(&mat->stash));
1426cec326SBarry Smith   PetscCall(MatStashDestroy_Private(&mat->bstash));
1526cec326SBarry Smith   PetscCall(MatDestroy(&baij->A));
1626cec326SBarry Smith   PetscCall(MatDestroy(&baij->B));
1726cec326SBarry Smith #if defined(PETSC_USE_CTABLE)
1826cec326SBarry Smith   PetscCall(PetscHMapIDestroy(&baij->colmap));
1926cec326SBarry Smith #else
2026cec326SBarry Smith   PetscCall(PetscFree(baij->colmap));
2126cec326SBarry Smith #endif
2226cec326SBarry Smith   PetscCall(PetscFree(baij->garray));
2326cec326SBarry Smith   PetscCall(VecDestroy(&baij->lvec));
2426cec326SBarry Smith   PetscCall(VecScatterDestroy(&baij->Mvctx));
2526cec326SBarry Smith   PetscCall(PetscFree2(baij->rowvalues, baij->rowindices));
2626cec326SBarry Smith   PetscCall(PetscFree(baij->barray));
2726cec326SBarry Smith   PetscCall(PetscFree2(baij->hd, baij->ht));
2826cec326SBarry Smith   PetscCall(PetscFree(baij->rangebs));
2926cec326SBarry Smith   PetscCall(PetscFree(mat->data));
3026cec326SBarry Smith 
3126cec326SBarry Smith   PetscCall(PetscObjectChangeTypeName((PetscObject)mat, NULL));
3226cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatStoreValues_C", NULL));
3326cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatRetrieveValues_C", NULL));
3426cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMPIBAIJSetPreallocation_C", NULL));
3526cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMPIBAIJSetPreallocationCSR_C", NULL));
3626cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDiagonalScaleLocal_C", NULL));
3726cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatSetHashTableFactor_C", NULL));
3826cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpibaij_mpisbaij_C", NULL));
3926cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpibaij_mpiadj_C", NULL));
4026cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpibaij_mpiaij_C", NULL));
4126cec326SBarry Smith #if defined(PETSC_HAVE_HYPRE)
4226cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpibaij_hypre_C", NULL));
4326cec326SBarry Smith #endif
4426cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpibaij_is_C", NULL));
4526cec326SBarry Smith   PetscFunctionReturn(PETSC_SUCCESS);
4626cec326SBarry Smith }
4726cec326SBarry Smith 
4826cec326SBarry Smith /* defines MatSetValues_MPI_Hash(), MatAssemblyBegin_MPI_Hash(), and  MatAssemblyEnd_MPI_Hash() */
4926cec326SBarry Smith #define TYPE BAIJ
5026cec326SBarry Smith #include "../src/mat/impls/aij/mpi/mpihashmat.h"
5126cec326SBarry Smith #undef TYPE
5226cec326SBarry Smith 
537ea3e4caSstefano_zampini #if defined(PETSC_HAVE_HYPRE)
547ea3e4caSstefano_zampini PETSC_INTERN PetscErrorCode MatConvert_AIJ_HYPRE(Mat, MatType, MatReuse, Mat *);
557ea3e4caSstefano_zampini #endif
567ea3e4caSstefano_zampini 
5766976f2fSJacob Faibussowitsch static PetscErrorCode MatGetRowMaxAbs_MPIBAIJ(Mat A, Vec v, PetscInt idx[])
58d71ae5a4SJacob Faibussowitsch {
597843d17aSBarry Smith   Mat_MPIBAIJ       *a = (Mat_MPIBAIJ *)A->data;
604e879edeSHong Zhang   PetscInt           i, *idxb = NULL, m = A->rmap->n, bs = A->cmap->bs;
61db161fc6SPierre Jolivet   PetscScalar       *vv;
624e879edeSHong Zhang   Vec                vB, vA;
63db161fc6SPierre Jolivet   const PetscScalar *va, *vb;
647843d17aSBarry Smith 
657843d17aSBarry Smith   PetscFunctionBegin;
66c7b600bfSPierre Jolivet   PetscCall(MatCreateVecs(a->A, NULL, &vA));
679566063dSJacob Faibussowitsch   PetscCall(MatGetRowMaxAbs(a->A, vA, idx));
684e879edeSHong Zhang 
69db161fc6SPierre Jolivet   PetscCall(VecGetArrayRead(vA, &va));
70985db425SBarry Smith   if (idx) {
714e879edeSHong Zhang     for (i = 0; i < m; i++) {
7226fbe8dcSKarl Rupp       if (PetscAbsScalar(va[i])) idx[i] += A->cmap->rstart;
7326fbe8dcSKarl Rupp     }
74985db425SBarry Smith   }
757843d17aSBarry Smith 
76c7b600bfSPierre Jolivet   PetscCall(MatCreateVecs(a->B, NULL, &vB));
779566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(m, &idxb));
789566063dSJacob Faibussowitsch   PetscCall(MatGetRowMaxAbs(a->B, vB, idxb));
797843d17aSBarry Smith 
809566063dSJacob Faibussowitsch   PetscCall(VecGetArrayWrite(v, &vv));
819566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(vB, &vb));
824e879edeSHong Zhang   for (i = 0; i < m; i++) {
8326fbe8dcSKarl Rupp     if (PetscAbsScalar(va[i]) < PetscAbsScalar(vb[i])) {
844e879edeSHong Zhang       vv[i] = vb[i];
854e879edeSHong Zhang       if (idx) idx[i] = bs * a->garray[idxb[i] / bs] + (idxb[i] % bs);
864e879edeSHong Zhang     } else {
874e879edeSHong Zhang       vv[i] = va[i];
889371c9d4SSatish Balay       if (idx && PetscAbsScalar(va[i]) == PetscAbsScalar(vb[i]) && idxb[i] != -1 && idx[i] > bs * a->garray[idxb[i] / bs] + (idxb[i] % bs)) idx[i] = bs * a->garray[idxb[i] / bs] + (idxb[i] % bs);
8926fbe8dcSKarl Rupp     }
907843d17aSBarry Smith   }
91db161fc6SPierre Jolivet   PetscCall(VecRestoreArrayWrite(v, &vv));
92db161fc6SPierre Jolivet   PetscCall(VecRestoreArrayRead(vA, &va));
939566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(vB, &vb));
949566063dSJacob Faibussowitsch   PetscCall(PetscFree(idxb));
959566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&vA));
969566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&vB));
973ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
987843d17aSBarry Smith }
997843d17aSBarry Smith 
100c7b600bfSPierre Jolivet static PetscErrorCode MatGetRowSumAbs_MPIBAIJ(Mat A, Vec v)
101c7b600bfSPierre Jolivet {
102c7b600bfSPierre Jolivet   Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data;
103c7b600bfSPierre Jolivet   Vec          vB, vA;
104c7b600bfSPierre Jolivet 
105c7b600bfSPierre Jolivet   PetscFunctionBegin;
106c7b600bfSPierre Jolivet   PetscCall(MatCreateVecs(a->A, NULL, &vA));
107c7b600bfSPierre Jolivet   PetscCall(MatGetRowSumAbs(a->A, vA));
108c7b600bfSPierre Jolivet   PetscCall(MatCreateVecs(a->B, NULL, &vB));
109c7b600bfSPierre Jolivet   PetscCall(MatGetRowSumAbs(a->B, vB));
110c7b600bfSPierre Jolivet   PetscCall(VecAXPY(vA, 1.0, vB));
111c7b600bfSPierre Jolivet   PetscCall(VecDestroy(&vB));
112c7b600bfSPierre Jolivet   PetscCall(VecCopy(vA, v));
113c7b600bfSPierre Jolivet   PetscCall(VecDestroy(&vA));
114c7b600bfSPierre Jolivet   PetscFunctionReturn(PETSC_SUCCESS);
115c7b600bfSPierre Jolivet }
116c7b600bfSPierre Jolivet 
11766976f2fSJacob Faibussowitsch static PetscErrorCode MatStoreValues_MPIBAIJ(Mat mat)
118d71ae5a4SJacob Faibussowitsch {
1197fc3c18eSBarry Smith   Mat_MPIBAIJ *aij = (Mat_MPIBAIJ *)mat->data;
1207fc3c18eSBarry Smith 
1217fc3c18eSBarry Smith   PetscFunctionBegin;
1229566063dSJacob Faibussowitsch   PetscCall(MatStoreValues(aij->A));
1239566063dSJacob Faibussowitsch   PetscCall(MatStoreValues(aij->B));
1243ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1257fc3c18eSBarry Smith }
1267fc3c18eSBarry Smith 
12766976f2fSJacob Faibussowitsch static PetscErrorCode MatRetrieveValues_MPIBAIJ(Mat mat)
128d71ae5a4SJacob Faibussowitsch {
1297fc3c18eSBarry Smith   Mat_MPIBAIJ *aij = (Mat_MPIBAIJ *)mat->data;
1307fc3c18eSBarry Smith 
1317fc3c18eSBarry Smith   PetscFunctionBegin;
1329566063dSJacob Faibussowitsch   PetscCall(MatRetrieveValues(aij->A));
1339566063dSJacob Faibussowitsch   PetscCall(MatRetrieveValues(aij->B));
1343ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1357fc3c18eSBarry Smith }
1367fc3c18eSBarry Smith 
137537820f0SBarry Smith /*
138537820f0SBarry Smith      Local utility routine that creates a mapping from the global column
13957b952d6SSatish Balay    number to the local number in the off-diagonal part of the local
140e06f6af7SJed Brown    storage of the matrix.  This is done in a non scalable way since the
14157b952d6SSatish Balay    length of colmap equals the global matrix length.
14257b952d6SSatish Balay */
143d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateColmap_MPIBAIJ_Private(Mat mat)
144d71ae5a4SJacob Faibussowitsch {
14557b952d6SSatish Balay   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data;
14657b952d6SSatish Balay   Mat_SeqBAIJ *B    = (Mat_SeqBAIJ *)baij->B->data;
147d0f46423SBarry Smith   PetscInt     nbs = B->nbs, i, bs = mat->rmap->bs;
14857b952d6SSatish Balay 
149d64ed03dSBarry Smith   PetscFunctionBegin;
150aa482453SBarry Smith #if defined(PETSC_USE_CTABLE)
151eec179cfSJacob Faibussowitsch   PetscCall(PetscHMapICreateWithSize(baij->nbs, &baij->colmap));
152c76ffc5fSJacob Faibussowitsch   for (i = 0; i < nbs; i++) PetscCall(PetscHMapISet(baij->colmap, baij->garray[i] + 1, i * bs + 1));
15348e59246SSatish Balay #else
1549566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(baij->Nbs + 1, &baij->colmap));
155928fc39bSSatish Balay   for (i = 0; i < nbs; i++) baij->colmap[baij->garray[i]] = i * bs + 1;
15648e59246SSatish Balay #endif
1573ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
15857b952d6SSatish Balay }
15957b952d6SSatish Balay 
160d40312a9SBarry Smith #define MatSetValues_SeqBAIJ_A_Private(row, col, value, addv, orow, ocol) \
161a8f51744SPierre Jolivet   do { \
16280c1aa95SSatish Balay     brow = row / bs; \
1638e3a54c0SPierre Jolivet     rp   = PetscSafePointerPlusOffset(aj, ai[brow]); \
1648e3a54c0SPierre Jolivet     ap   = PetscSafePointerPlusOffset(aa, bs2 * ai[brow]); \
1659371c9d4SSatish Balay     rmax = aimax[brow]; \
1669371c9d4SSatish Balay     nrow = ailen[brow]; \
16780c1aa95SSatish Balay     bcol = col / bs; \
1689371c9d4SSatish Balay     ridx = row % bs; \
1699371c9d4SSatish Balay     cidx = col % bs; \
1709371c9d4SSatish Balay     low  = 0; \
1719371c9d4SSatish Balay     high = nrow; \
172ab26458aSBarry Smith     while (high - low > 3) { \
173ab26458aSBarry Smith       t = (low + high) / 2; \
174ab26458aSBarry Smith       if (rp[t] > bcol) high = t; \
175ab26458aSBarry Smith       else low = t; \
176ab26458aSBarry Smith     } \
177ab26458aSBarry Smith     for (_i = low; _i < high; _i++) { \
17880c1aa95SSatish Balay       if (rp[_i] > bcol) break; \
17980c1aa95SSatish Balay       if (rp[_i] == bcol) { \
18080c1aa95SSatish Balay         bap = ap + bs2 * _i + bs * cidx + ridx; \
181eada6651SSatish Balay         if (addv == ADD_VALUES) *bap += value; \
182eada6651SSatish Balay         else *bap = value; \
183ac7a638eSSatish Balay         goto a_noinsert; \
18480c1aa95SSatish Balay       } \
18580c1aa95SSatish Balay     } \
18689280ab3SLois Curfman McInnes     if (a->nonew == 1) goto a_noinsert; \
1875f80ce2aSJacob Faibussowitsch     PetscCheck(a->nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", orow, ocol); \
188fef13f97SBarry Smith     MatSeqXAIJReallocateAIJ(A, a->mbs, bs2, nrow, brow, bcol, rmax, aa, ai, aj, rp, ap, aimax, a->nonew, MatScalar); \
18980c1aa95SSatish Balay     N = nrow++ - 1; \
19080c1aa95SSatish Balay     /* shift up all the later entries in this row */ \
1919566063dSJacob Faibussowitsch     PetscCall(PetscArraymove(rp + _i + 1, rp + _i, N - _i + 1)); \
1929566063dSJacob Faibussowitsch     PetscCall(PetscArraymove(ap + bs2 * (_i + 1), ap + bs2 * _i, bs2 * (N - _i + 1))); \
1939566063dSJacob Faibussowitsch     PetscCall(PetscArrayzero(ap + bs2 * _i, bs2)); \
19480c1aa95SSatish Balay     rp[_i]                          = bcol; \
19580c1aa95SSatish Balay     ap[bs2 * _i + bs * cidx + ridx] = value; \
196ac7a638eSSatish Balay   a_noinsert:; \
19780c1aa95SSatish Balay     ailen[brow] = nrow; \
198a8f51744SPierre Jolivet   } while (0)
19957b952d6SSatish Balay 
200d40312a9SBarry Smith #define MatSetValues_SeqBAIJ_B_Private(row, col, value, addv, orow, ocol) \
201a8f51744SPierre Jolivet   do { \
202ac7a638eSSatish Balay     brow = row / bs; \
2038e3a54c0SPierre Jolivet     rp   = PetscSafePointerPlusOffset(bj, bi[brow]); \
2048e3a54c0SPierre Jolivet     ap   = PetscSafePointerPlusOffset(ba, bs2 * bi[brow]); \
2059371c9d4SSatish Balay     rmax = bimax[brow]; \
2069371c9d4SSatish Balay     nrow = bilen[brow]; \
207ac7a638eSSatish Balay     bcol = col / bs; \
2089371c9d4SSatish Balay     ridx = row % bs; \
2099371c9d4SSatish Balay     cidx = col % bs; \
2109371c9d4SSatish Balay     low  = 0; \
2119371c9d4SSatish Balay     high = nrow; \
212ac7a638eSSatish Balay     while (high - low > 3) { \
213ac7a638eSSatish Balay       t = (low + high) / 2; \
214ac7a638eSSatish Balay       if (rp[t] > bcol) high = t; \
215ac7a638eSSatish Balay       else low = t; \
216ac7a638eSSatish Balay     } \
217ac7a638eSSatish Balay     for (_i = low; _i < high; _i++) { \
218ac7a638eSSatish Balay       if (rp[_i] > bcol) break; \
219ac7a638eSSatish Balay       if (rp[_i] == bcol) { \
220ac7a638eSSatish Balay         bap = ap + bs2 * _i + bs * cidx + ridx; \
221ac7a638eSSatish Balay         if (addv == ADD_VALUES) *bap += value; \
222ac7a638eSSatish Balay         else *bap = value; \
223ac7a638eSSatish Balay         goto b_noinsert; \
224ac7a638eSSatish Balay       } \
225ac7a638eSSatish Balay     } \
22689280ab3SLois Curfman McInnes     if (b->nonew == 1) goto b_noinsert; \
2275f80ce2aSJacob Faibussowitsch     PetscCheck(b->nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero at global row/column  (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", orow, ocol); \
228fef13f97SBarry Smith     MatSeqXAIJReallocateAIJ(B, b->mbs, bs2, nrow, brow, bcol, rmax, ba, bi, bj, rp, ap, bimax, b->nonew, MatScalar); \
229ac7a638eSSatish Balay     N = nrow++ - 1; \
230ac7a638eSSatish Balay     /* shift up all the later entries in this row */ \
2319566063dSJacob Faibussowitsch     PetscCall(PetscArraymove(rp + _i + 1, rp + _i, N - _i + 1)); \
2329566063dSJacob Faibussowitsch     PetscCall(PetscArraymove(ap + bs2 * (_i + 1), ap + bs2 * _i, bs2 * (N - _i + 1))); \
2339566063dSJacob Faibussowitsch     PetscCall(PetscArrayzero(ap + bs2 * _i, bs2)); \
234ac7a638eSSatish Balay     rp[_i]                          = bcol; \
235ac7a638eSSatish Balay     ap[bs2 * _i + bs * cidx + ridx] = value; \
236ac7a638eSSatish Balay   b_noinsert:; \
237ac7a638eSSatish Balay     bilen[brow] = nrow; \
238a8f51744SPierre Jolivet   } while (0)
239ac7a638eSSatish Balay 
240d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetValues_MPIBAIJ(Mat mat, PetscInt m, const PetscInt im[], PetscInt n, const PetscInt in[], const PetscScalar v[], InsertMode addv)
241d71ae5a4SJacob Faibussowitsch {
24257b952d6SSatish Balay   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data;
24393fea6afSBarry Smith   MatScalar    value;
244ace3abfcSBarry Smith   PetscBool    roworiented = baij->roworiented;
245b24ad042SBarry Smith   PetscInt     i, j, row, col;
246d0f46423SBarry Smith   PetscInt     rstart_orig = mat->rmap->rstart;
247d0f46423SBarry Smith   PetscInt     rend_orig = mat->rmap->rend, cstart_orig = mat->cmap->rstart;
248d0f46423SBarry Smith   PetscInt     cend_orig = mat->cmap->rend, bs = mat->rmap->bs;
24957b952d6SSatish Balay 
250eada6651SSatish Balay   /* Some Variables required in the macro */
25180c1aa95SSatish Balay   Mat          A     = baij->A;
25257508eceSPierre Jolivet   Mat_SeqBAIJ *a     = (Mat_SeqBAIJ *)A->data;
253b24ad042SBarry Smith   PetscInt    *aimax = a->imax, *ai = a->i, *ailen = a->ilen, *aj = a->j;
2543eda8832SBarry Smith   MatScalar   *aa = a->a;
255ac7a638eSSatish Balay 
256ac7a638eSSatish Balay   Mat          B     = baij->B;
25757508eceSPierre Jolivet   Mat_SeqBAIJ *b     = (Mat_SeqBAIJ *)B->data;
258b24ad042SBarry Smith   PetscInt    *bimax = b->imax, *bi = b->i, *bilen = b->ilen, *bj = b->j;
2593eda8832SBarry Smith   MatScalar   *ba = b->a;
260ac7a638eSSatish Balay 
261b24ad042SBarry Smith   PetscInt  *rp, ii, nrow, _i, rmax, N, brow, bcol;
262b24ad042SBarry Smith   PetscInt   low, high, t, ridx, cidx, bs2 = a->bs2;
2633eda8832SBarry Smith   MatScalar *ap, *bap;
26480c1aa95SSatish Balay 
265d64ed03dSBarry Smith   PetscFunctionBegin;
26657b952d6SSatish Balay   for (i = 0; i < m; i++) {
2675ef9f2a5SBarry Smith     if (im[i] < 0) continue;
2685f80ce2aSJacob Faibussowitsch     PetscCheck(im[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, im[i], mat->rmap->N - 1);
26957b952d6SSatish Balay     if (im[i] >= rstart_orig && im[i] < rend_orig) {
27057b952d6SSatish Balay       row = im[i] - rstart_orig;
27157b952d6SSatish Balay       for (j = 0; j < n; j++) {
27257b952d6SSatish Balay         if (in[j] >= cstart_orig && in[j] < cend_orig) {
27357b952d6SSatish Balay           col = in[j] - cstart_orig;
274db4deed7SKarl Rupp           if (roworiented) value = v[i * n + j];
275db4deed7SKarl Rupp           else value = v[i + j * m];
276d40312a9SBarry Smith           MatSetValues_SeqBAIJ_A_Private(row, col, value, addv, im[i], in[j]);
277f7d195e4SLawrence Mitchell         } else if (in[j] < 0) {
278f7d195e4SLawrence Mitchell           continue;
279f7d195e4SLawrence Mitchell         } else {
280f7d195e4SLawrence Mitchell           PetscCheck(in[j] < mat->cmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, in[j], mat->cmap->N - 1);
28157b952d6SSatish Balay           if (mat->was_assembled) {
28248a46eb9SPierre Jolivet             if (!baij->colmap) PetscCall(MatCreateColmap_MPIBAIJ_Private(mat));
283aa482453SBarry Smith #if defined(PETSC_USE_CTABLE)
284eec179cfSJacob Faibussowitsch             PetscCall(PetscHMapIGetWithDefault(baij->colmap, in[j] / bs + 1, 0, &col));
285bba1ac68SSatish Balay             col = col - 1;
28648e59246SSatish Balay #else
287bba1ac68SSatish Balay             col = baij->colmap[in[j] / bs] - 1;
28848e59246SSatish Balay #endif
289f4f49eeaSPierre Jolivet             if (col < 0 && !((Mat_SeqBAIJ *)baij->B->data)->nonew) {
2909566063dSJacob Faibussowitsch               PetscCall(MatDisAssemble_MPIBAIJ(mat));
2918295de27SSatish Balay               col = in[j];
2929bf004c3SSatish Balay               /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */
2939bf004c3SSatish Balay               B     = baij->B;
29457508eceSPierre Jolivet               b     = (Mat_SeqBAIJ *)B->data;
2959371c9d4SSatish Balay               bimax = b->imax;
2969371c9d4SSatish Balay               bi    = b->i;
2979371c9d4SSatish Balay               bilen = b->ilen;
2989371c9d4SSatish Balay               bj    = b->j;
2999bf004c3SSatish Balay               ba    = b->a;
300f7d195e4SLawrence Mitchell             } else {
301f7d195e4SLawrence Mitchell               PetscCheck(col >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", im[i], in[j]);
302f7d195e4SLawrence Mitchell               col += in[j] % bs;
303f7d195e4SLawrence Mitchell             }
3048295de27SSatish Balay           } else col = in[j];
305db4deed7SKarl Rupp           if (roworiented) value = v[i * n + j];
306db4deed7SKarl Rupp           else value = v[i + j * m];
307d40312a9SBarry Smith           MatSetValues_SeqBAIJ_B_Private(row, col, value, addv, im[i], in[j]);
3089566063dSJacob Faibussowitsch           /* PetscCall(MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv)); */
30957b952d6SSatish Balay         }
31057b952d6SSatish Balay       }
311d64ed03dSBarry Smith     } else {
3125f80ce2aSJacob Faibussowitsch       PetscCheck(!mat->nooffprocentries, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Setting off process row %" PetscInt_FMT " even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set", im[i]);
31390f02eecSBarry Smith       if (!baij->donotstash) {
3145080c13bSMatthew G Knepley         mat->assembled = PETSC_FALSE;
315ff2fd236SBarry Smith         if (roworiented) {
3169566063dSJacob Faibussowitsch           PetscCall(MatStashValuesRow_Private(&mat->stash, im[i], n, in, v + i * n, PETSC_FALSE));
317ff2fd236SBarry Smith         } else {
3189566063dSJacob Faibussowitsch           PetscCall(MatStashValuesCol_Private(&mat->stash, im[i], n, in, v + i, m, PETSC_FALSE));
31957b952d6SSatish Balay         }
32057b952d6SSatish Balay       }
32157b952d6SSatish Balay     }
32290f02eecSBarry Smith   }
3233ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
32457b952d6SSatish Balay }
32557b952d6SSatish Balay 
326d71ae5a4SJacob Faibussowitsch static inline PetscErrorCode MatSetValuesBlocked_SeqBAIJ_Inlined(Mat A, PetscInt row, PetscInt col, const PetscScalar v[], InsertMode is, PetscInt orow, PetscInt ocol)
327d71ae5a4SJacob Faibussowitsch {
328880c6e6aSBarry Smith   Mat_SeqBAIJ       *a = (Mat_SeqBAIJ *)A->data;
3298ab52850SBarry Smith   PetscInt          *rp, low, high, t, ii, jj, nrow, i, rmax, N;
330880c6e6aSBarry Smith   PetscInt          *imax = a->imax, *ai = a->i, *ailen = a->ilen;
3318ab52850SBarry Smith   PetscInt          *aj = a->j, nonew = a->nonew, bs2 = a->bs2, bs = A->rmap->bs;
332880c6e6aSBarry Smith   PetscBool          roworiented = a->roworiented;
333880c6e6aSBarry Smith   const PetscScalar *value       = v;
334880c6e6aSBarry Smith   MatScalar         *ap, *aa = a->a, *bap;
335880c6e6aSBarry Smith 
336880c6e6aSBarry Smith   PetscFunctionBegin;
337880c6e6aSBarry Smith   rp    = aj + ai[row];
338880c6e6aSBarry Smith   ap    = aa + bs2 * ai[row];
339880c6e6aSBarry Smith   rmax  = imax[row];
340880c6e6aSBarry Smith   nrow  = ailen[row];
3418ab52850SBarry Smith   value = v;
3428ab52850SBarry Smith   low   = 0;
3438ab52850SBarry Smith   high  = nrow;
344880c6e6aSBarry Smith   while (high - low > 7) {
345880c6e6aSBarry Smith     t = (low + high) / 2;
346880c6e6aSBarry Smith     if (rp[t] > col) high = t;
347880c6e6aSBarry Smith     else low = t;
348880c6e6aSBarry Smith   }
349880c6e6aSBarry Smith   for (i = low; i < high; i++) {
350880c6e6aSBarry Smith     if (rp[i] > col) break;
351880c6e6aSBarry Smith     if (rp[i] == col) {
352880c6e6aSBarry Smith       bap = ap + bs2 * i;
353880c6e6aSBarry Smith       if (roworiented) {
354880c6e6aSBarry Smith         if (is == ADD_VALUES) {
3558ab52850SBarry Smith           for (ii = 0; ii < bs; ii++) {
356ad540459SPierre Jolivet             for (jj = ii; jj < bs2; jj += bs) bap[jj] += *value++;
357880c6e6aSBarry Smith           }
358880c6e6aSBarry Smith         } else {
3598ab52850SBarry Smith           for (ii = 0; ii < bs; ii++) {
360ad540459SPierre Jolivet             for (jj = ii; jj < bs2; jj += bs) bap[jj] = *value++;
361880c6e6aSBarry Smith           }
362880c6e6aSBarry Smith         }
363880c6e6aSBarry Smith       } else {
364880c6e6aSBarry Smith         if (is == ADD_VALUES) {
3658ab52850SBarry Smith           for (ii = 0; ii < bs; ii++, value += bs) {
366ad540459SPierre Jolivet             for (jj = 0; jj < bs; jj++) bap[jj] += value[jj];
367880c6e6aSBarry Smith             bap += bs;
368880c6e6aSBarry Smith           }
369880c6e6aSBarry Smith         } else {
3708ab52850SBarry Smith           for (ii = 0; ii < bs; ii++, value += bs) {
371ad540459SPierre Jolivet             for (jj = 0; jj < bs; jj++) bap[jj] = value[jj];
372880c6e6aSBarry Smith             bap += bs;
373880c6e6aSBarry Smith           }
374880c6e6aSBarry Smith         }
375880c6e6aSBarry Smith       }
376880c6e6aSBarry Smith       goto noinsert2;
377880c6e6aSBarry Smith     }
378880c6e6aSBarry Smith   }
379880c6e6aSBarry Smith   if (nonew == 1) goto noinsert2;
3805f80ce2aSJacob Faibussowitsch   PetscCheck(nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new global block indexed nonzero block (%" PetscInt_FMT ", %" PetscInt_FMT ") in the matrix", orow, ocol);
381880c6e6aSBarry Smith   MatSeqXAIJReallocateAIJ(A, a->mbs, bs2, nrow, row, col, rmax, aa, ai, aj, rp, ap, imax, nonew, MatScalar);
3829371c9d4SSatish Balay   N = nrow++ - 1;
3839371c9d4SSatish Balay   high++;
384880c6e6aSBarry Smith   /* shift up all the later entries in this row */
3859566063dSJacob Faibussowitsch   PetscCall(PetscArraymove(rp + i + 1, rp + i, N - i + 1));
3869566063dSJacob Faibussowitsch   PetscCall(PetscArraymove(ap + bs2 * (i + 1), ap + bs2 * i, bs2 * (N - i + 1)));
387880c6e6aSBarry Smith   rp[i] = col;
388880c6e6aSBarry Smith   bap   = ap + bs2 * i;
389880c6e6aSBarry Smith   if (roworiented) {
3908ab52850SBarry Smith     for (ii = 0; ii < bs; ii++) {
391ad540459SPierre Jolivet       for (jj = ii; jj < bs2; jj += bs) bap[jj] = *value++;
392880c6e6aSBarry Smith     }
393880c6e6aSBarry Smith   } else {
3948ab52850SBarry Smith     for (ii = 0; ii < bs; ii++) {
395ad540459SPierre Jolivet       for (jj = 0; jj < bs; jj++) *bap++ = *value++;
396880c6e6aSBarry Smith     }
397880c6e6aSBarry Smith   }
398880c6e6aSBarry Smith noinsert2:;
399880c6e6aSBarry Smith   ailen[row] = nrow;
4003ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
401880c6e6aSBarry Smith }
402880c6e6aSBarry Smith 
4038ab52850SBarry Smith /*
4048ab52850SBarry Smith     This routine should be optimized so that the block copy at ** Here a copy is required ** below is not needed
4058ab52850SBarry Smith     by passing additional stride information into the MatSetValuesBlocked_SeqBAIJ_Inlined() routine
4068ab52850SBarry Smith */
40766976f2fSJacob Faibussowitsch static PetscErrorCode MatSetValuesBlocked_MPIBAIJ(Mat mat, PetscInt m, const PetscInt im[], PetscInt n, const PetscInt in[], const PetscScalar v[], InsertMode addv)
408d71ae5a4SJacob Faibussowitsch {
409ab26458aSBarry Smith   Mat_MPIBAIJ       *baij = (Mat_MPIBAIJ *)mat->data;
410dd6ea824SBarry Smith   const PetscScalar *value;
411f15d580aSBarry Smith   MatScalar         *barray      = baij->barray;
412ace3abfcSBarry Smith   PetscBool          roworiented = baij->roworiented;
413899cda47SBarry Smith   PetscInt           i, j, ii, jj, row, col, rstart = baij->rstartbs;
414899cda47SBarry Smith   PetscInt           rend = baij->rendbs, cstart = baij->cstartbs, stepval;
415d0f46423SBarry Smith   PetscInt           cend = baij->cendbs, bs = mat->rmap->bs, bs2 = baij->bs2;
416ab26458aSBarry Smith 
417b16ae2b1SBarry Smith   PetscFunctionBegin;
41830793edcSSatish Balay   if (!barray) {
4199566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(bs2, &barray));
42082502324SSatish Balay     baij->barray = barray;
42130793edcSSatish Balay   }
42230793edcSSatish Balay 
42326fbe8dcSKarl Rupp   if (roworiented) stepval = (n - 1) * bs;
42426fbe8dcSKarl Rupp   else stepval = (m - 1) * bs;
42526fbe8dcSKarl Rupp 
426ab26458aSBarry Smith   for (i = 0; i < m; i++) {
4275ef9f2a5SBarry Smith     if (im[i] < 0) continue;
4286bdcaf15SBarry Smith     PetscCheck(im[i] < baij->Mbs, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Block indexed row too large %" PetscInt_FMT " max %" PetscInt_FMT, im[i], baij->Mbs - 1);
429ab26458aSBarry Smith     if (im[i] >= rstart && im[i] < rend) {
430ab26458aSBarry Smith       row = im[i] - rstart;
431ab26458aSBarry Smith       for (j = 0; j < n; j++) {
43215b57d14SSatish Balay         /* If NumCol = 1 then a copy is not required */
43315b57d14SSatish Balay         if ((roworiented) && (n == 1)) {
434f15d580aSBarry Smith           barray = (MatScalar *)v + i * bs2;
43515b57d14SSatish Balay         } else if ((!roworiented) && (m == 1)) {
436f15d580aSBarry Smith           barray = (MatScalar *)v + j * bs2;
43715b57d14SSatish Balay         } else { /* Here a copy is required */
438ab26458aSBarry Smith           if (roworiented) {
43953ef36baSBarry Smith             value = v + (i * (stepval + bs) + j) * bs;
440ab26458aSBarry Smith           } else {
44153ef36baSBarry Smith             value = v + (j * (stepval + bs) + i) * bs;
442abef11f7SSatish Balay           }
44353ef36baSBarry Smith           for (ii = 0; ii < bs; ii++, value += bs + stepval) {
44426fbe8dcSKarl Rupp             for (jj = 0; jj < bs; jj++) barray[jj] = value[jj];
44553ef36baSBarry Smith             barray += bs;
44647513183SBarry Smith           }
44730793edcSSatish Balay           barray -= bs2;
44815b57d14SSatish Balay         }
449abef11f7SSatish Balay 
450abef11f7SSatish Balay         if (in[j] >= cstart && in[j] < cend) {
451abef11f7SSatish Balay           col = in[j] - cstart;
4529566063dSJacob Faibussowitsch           PetscCall(MatSetValuesBlocked_SeqBAIJ_Inlined(baij->A, row, col, barray, addv, im[i], in[j]));
453f7d195e4SLawrence Mitchell         } else if (in[j] < 0) {
454f7d195e4SLawrence Mitchell           continue;
455f7d195e4SLawrence Mitchell         } else {
456f7d195e4SLawrence Mitchell           PetscCheck(in[j] < baij->Nbs, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Block indexed column too large %" PetscInt_FMT " max %" PetscInt_FMT, in[j], baij->Nbs - 1);
457ab26458aSBarry Smith           if (mat->was_assembled) {
45848a46eb9SPierre Jolivet             if (!baij->colmap) PetscCall(MatCreateColmap_MPIBAIJ_Private(mat));
459a5eb4965SSatish Balay 
460aa482453SBarry Smith #if defined(PETSC_USE_CTABLE)
461eec179cfSJacob Faibussowitsch             PetscCall(PetscHMapIGetWithDefault(baij->colmap, in[j] + 1, 0, &col));
462b758ae8cSBarry Smith             col = col < 1 ? -1 : (col - 1) / bs;
46348e59246SSatish Balay #else
464b758ae8cSBarry Smith             col = baij->colmap[in[j]] < 1 ? -1 : (baij->colmap[in[j]] - 1) / bs;
46548e59246SSatish Balay #endif
466f4f49eeaSPierre Jolivet             if (col < 0 && !((Mat_SeqBAIJ *)baij->B->data)->nonew) {
4679566063dSJacob Faibussowitsch               PetscCall(MatDisAssemble_MPIBAIJ(mat));
468ab26458aSBarry Smith               col = in[j];
4695f80ce2aSJacob Faibussowitsch             } else PetscCheck(col >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new blocked indexed nonzero block (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", im[i], in[j]);
470db4deed7SKarl Rupp           } else col = in[j];
4719566063dSJacob Faibussowitsch           PetscCall(MatSetValuesBlocked_SeqBAIJ_Inlined(baij->B, row, col, barray, addv, im[i], in[j]));
472ab26458aSBarry Smith         }
473ab26458aSBarry Smith       }
474d64ed03dSBarry Smith     } else {
4755f80ce2aSJacob Faibussowitsch       PetscCheck(!mat->nooffprocentries, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Setting off process block indexed row %" PetscInt_FMT " even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set", im[i]);
476ab26458aSBarry Smith       if (!baij->donotstash) {
477ff2fd236SBarry Smith         if (roworiented) {
4789566063dSJacob Faibussowitsch           PetscCall(MatStashValuesRowBlocked_Private(&mat->bstash, im[i], n, in, v, m, n, i));
479ff2fd236SBarry Smith         } else {
4809566063dSJacob Faibussowitsch           PetscCall(MatStashValuesColBlocked_Private(&mat->bstash, im[i], n, in, v, m, n, i));
481ff2fd236SBarry Smith         }
482abef11f7SSatish Balay       }
483ab26458aSBarry Smith     }
484ab26458aSBarry Smith   }
4853ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
486ab26458aSBarry Smith }
4876fa18ffdSBarry Smith 
4880bdbc534SSatish Balay #define HASH_KEY             0.6180339887
489b24ad042SBarry Smith #define HASH(size, key, tmp) (tmp = (key) * HASH_KEY, (PetscInt)((size) * (tmp - (PetscInt)tmp)))
490b24ad042SBarry Smith /* #define HASH(size,key) ((PetscInt)((size)*fmod(((key)*HASH_KEY),1))) */
491b24ad042SBarry Smith /* #define HASH(size,key,tmp) ((PetscInt)((size)*fmod(((key)*HASH_KEY),1))) */
49266976f2fSJacob Faibussowitsch static PetscErrorCode MatSetValues_MPIBAIJ_HT(Mat mat, PetscInt m, const PetscInt im[], PetscInt n, const PetscInt in[], const PetscScalar v[], InsertMode addv)
493d71ae5a4SJacob Faibussowitsch {
4940bdbc534SSatish Balay   Mat_MPIBAIJ *baij        = (Mat_MPIBAIJ *)mat->data;
495ace3abfcSBarry Smith   PetscBool    roworiented = baij->roworiented;
496b24ad042SBarry Smith   PetscInt     i, j, row, col;
497d0f46423SBarry Smith   PetscInt     rstart_orig = mat->rmap->rstart;
498d0f46423SBarry Smith   PetscInt     rend_orig = mat->rmap->rend, Nbs = baij->Nbs;
499d0f46423SBarry Smith   PetscInt     h1, key, size = baij->ht_size, bs = mat->rmap->bs, *HT = baij->ht, idx;
500329f5518SBarry Smith   PetscReal    tmp;
5013eda8832SBarry Smith   MatScalar  **HD       = baij->hd, value;
502b24ad042SBarry Smith   PetscInt     total_ct = baij->ht_total_ct, insert_ct = baij->ht_insert_ct;
5030bdbc534SSatish Balay 
5040bdbc534SSatish Balay   PetscFunctionBegin;
5050bdbc534SSatish Balay   for (i = 0; i < m; i++) {
50676bd3646SJed Brown     if (PetscDefined(USE_DEBUG)) {
5075f80ce2aSJacob Faibussowitsch       PetscCheck(im[i] >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Negative row");
5085f80ce2aSJacob Faibussowitsch       PetscCheck(im[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, im[i], mat->rmap->N - 1);
50976bd3646SJed Brown     }
5100bdbc534SSatish Balay     row = im[i];
511c2760754SSatish Balay     if (row >= rstart_orig && row < rend_orig) {
5120bdbc534SSatish Balay       for (j = 0; j < n; j++) {
5130bdbc534SSatish Balay         col = in[j];
514db4deed7SKarl Rupp         if (roworiented) value = v[i * n + j];
515db4deed7SKarl Rupp         else value = v[i + j * m];
516b24ad042SBarry Smith         /* Look up PetscInto the Hash Table */
517c2760754SSatish Balay         key = (row / bs) * Nbs + (col / bs) + 1;
518c2760754SSatish Balay         h1  = HASH(size, key, tmp);
5190bdbc534SSatish Balay 
520c2760754SSatish Balay         idx = h1;
52176bd3646SJed Brown         if (PetscDefined(USE_DEBUG)) {
522187ce0cbSSatish Balay           insert_ct++;
523187ce0cbSSatish Balay           total_ct++;
524187ce0cbSSatish Balay           if (HT[idx] != key) {
525fbccb6d4SPierre Jolivet             for (idx = h1; (idx < size) && (HT[idx] != key); idx++, total_ct++);
526187ce0cbSSatish Balay             if (idx == size) {
527fbccb6d4SPierre Jolivet               for (idx = 0; (idx < h1) && (HT[idx] != key); idx++, total_ct++);
5285f80ce2aSJacob Faibussowitsch               PetscCheck(idx != h1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "(%" PetscInt_FMT ",%" PetscInt_FMT ") has no entry in the hash table", row, col);
529187ce0cbSSatish Balay             }
530187ce0cbSSatish Balay           }
53176bd3646SJed Brown         } else if (HT[idx] != key) {
532fbccb6d4SPierre Jolivet           for (idx = h1; (idx < size) && (HT[idx] != key); idx++);
533c2760754SSatish Balay           if (idx == size) {
534fbccb6d4SPierre Jolivet             for (idx = 0; (idx < h1) && (HT[idx] != key); idx++);
5355f80ce2aSJacob Faibussowitsch             PetscCheck(idx != h1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "(%" PetscInt_FMT ",%" PetscInt_FMT ") has no entry in the hash table", row, col);
536c2760754SSatish Balay           }
537c2760754SSatish Balay         }
538c2760754SSatish Balay         /* A HASH table entry is found, so insert the values at the correct address */
539c2760754SSatish Balay         if (addv == ADD_VALUES) *(HD[idx] + (col % bs) * bs + (row % bs)) += value;
540c2760754SSatish Balay         else *(HD[idx] + (col % bs) * bs + (row % bs)) = value;
5410bdbc534SSatish Balay       }
54226fbe8dcSKarl Rupp     } else if (!baij->donotstash) {
543ff2fd236SBarry Smith       if (roworiented) {
5449566063dSJacob Faibussowitsch         PetscCall(MatStashValuesRow_Private(&mat->stash, im[i], n, in, v + i * n, PETSC_FALSE));
545ff2fd236SBarry Smith       } else {
5469566063dSJacob Faibussowitsch         PetscCall(MatStashValuesCol_Private(&mat->stash, im[i], n, in, v + i, m, PETSC_FALSE));
5470bdbc534SSatish Balay       }
5480bdbc534SSatish Balay     }
5490bdbc534SSatish Balay   }
55076bd3646SJed Brown   if (PetscDefined(USE_DEBUG)) {
551abf3b562SBarry Smith     baij->ht_total_ct += total_ct;
552abf3b562SBarry Smith     baij->ht_insert_ct += insert_ct;
55376bd3646SJed Brown   }
5543ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
5550bdbc534SSatish Balay }
5560bdbc534SSatish Balay 
55766976f2fSJacob Faibussowitsch static PetscErrorCode MatSetValuesBlocked_MPIBAIJ_HT(Mat mat, PetscInt m, const PetscInt im[], PetscInt n, const PetscInt in[], const PetscScalar v[], InsertMode addv)
558d71ae5a4SJacob Faibussowitsch {
5590bdbc534SSatish Balay   Mat_MPIBAIJ       *baij        = (Mat_MPIBAIJ *)mat->data;
560ace3abfcSBarry Smith   PetscBool          roworiented = baij->roworiented;
561b24ad042SBarry Smith   PetscInt           i, j, ii, jj, row, col;
562899cda47SBarry Smith   PetscInt           rstart = baij->rstartbs;
563d0f46423SBarry Smith   PetscInt           rend = mat->rmap->rend, stepval, bs = mat->rmap->bs, bs2 = baij->bs2, nbs2 = n * bs2;
564b24ad042SBarry Smith   PetscInt           h1, key, size = baij->ht_size, idx, *HT = baij->ht, Nbs = baij->Nbs;
565329f5518SBarry Smith   PetscReal          tmp;
5663eda8832SBarry Smith   MatScalar        **HD = baij->hd, *baij_a;
567dd6ea824SBarry Smith   const PetscScalar *v_t, *value;
568b24ad042SBarry Smith   PetscInt           total_ct = baij->ht_total_ct, insert_ct = baij->ht_insert_ct;
5690bdbc534SSatish Balay 
570d0a41580SSatish Balay   PetscFunctionBegin;
57126fbe8dcSKarl Rupp   if (roworiented) stepval = (n - 1) * bs;
57226fbe8dcSKarl Rupp   else stepval = (m - 1) * bs;
57326fbe8dcSKarl Rupp 
5740bdbc534SSatish Balay   for (i = 0; i < m; i++) {
57576bd3646SJed Brown     if (PetscDefined(USE_DEBUG)) {
5765f80ce2aSJacob Faibussowitsch       PetscCheck(im[i] >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Negative row: %" PetscInt_FMT, im[i]);
5775f80ce2aSJacob Faibussowitsch       PetscCheck(im[i] < baij->Mbs, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, im[i], baij->Mbs - 1);
57876bd3646SJed Brown     }
5790bdbc534SSatish Balay     row = im[i];
580ab715e2cSSatish Balay     v_t = v + i * nbs2;
581c2760754SSatish Balay     if (row >= rstart && row < rend) {
5820bdbc534SSatish Balay       for (j = 0; j < n; j++) {
5830bdbc534SSatish Balay         col = in[j];
5840bdbc534SSatish Balay 
5850bdbc534SSatish Balay         /* Look up into the Hash Table */
586c2760754SSatish Balay         key = row * Nbs + col + 1;
587c2760754SSatish Balay         h1  = HASH(size, key, tmp);
5880bdbc534SSatish Balay 
589c2760754SSatish Balay         idx = h1;
59076bd3646SJed Brown         if (PetscDefined(USE_DEBUG)) {
591187ce0cbSSatish Balay           total_ct++;
592187ce0cbSSatish Balay           insert_ct++;
593187ce0cbSSatish Balay           if (HT[idx] != key) {
594fbccb6d4SPierre Jolivet             for (idx = h1; (idx < size) && (HT[idx] != key); idx++, total_ct++);
595187ce0cbSSatish Balay             if (idx == size) {
596fbccb6d4SPierre Jolivet               for (idx = 0; (idx < h1) && (HT[idx] != key); idx++, total_ct++);
5975f80ce2aSJacob Faibussowitsch               PetscCheck(idx != h1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "(%" PetscInt_FMT ",%" PetscInt_FMT ") has no entry in the hash table", row, col);
598187ce0cbSSatish Balay             }
599187ce0cbSSatish Balay           }
60076bd3646SJed Brown         } else if (HT[idx] != key) {
601fbccb6d4SPierre Jolivet           for (idx = h1; (idx < size) && (HT[idx] != key); idx++);
602c2760754SSatish Balay           if (idx == size) {
603fbccb6d4SPierre Jolivet             for (idx = 0; (idx < h1) && (HT[idx] != key); idx++);
6045f80ce2aSJacob Faibussowitsch             PetscCheck(idx != h1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "(%" PetscInt_FMT ",%" PetscInt_FMT ") has no entry in the hash table", row, col);
605c2760754SSatish Balay           }
606c2760754SSatish Balay         }
607c2760754SSatish Balay         baij_a = HD[idx];
6080bdbc534SSatish Balay         if (roworiented) {
609c2760754SSatish Balay           /*value = v + i*(stepval+bs)*bs + j*bs;*/
610187ce0cbSSatish Balay           /* value = v + (i*(stepval+bs)+j)*bs; */
611187ce0cbSSatish Balay           value = v_t;
612187ce0cbSSatish Balay           v_t += bs;
613fef45726SSatish Balay           if (addv == ADD_VALUES) {
614c2760754SSatish Balay             for (ii = 0; ii < bs; ii++, value += stepval) {
615ad540459SPierre Jolivet               for (jj = ii; jj < bs2; jj += bs) baij_a[jj] += *value++;
616b4cc0f5aSSatish Balay             }
617fef45726SSatish Balay           } else {
618c2760754SSatish Balay             for (ii = 0; ii < bs; ii++, value += stepval) {
619ad540459SPierre Jolivet               for (jj = ii; jj < bs2; jj += bs) baij_a[jj] = *value++;
620fef45726SSatish Balay             }
621fef45726SSatish Balay           }
6220bdbc534SSatish Balay         } else {
6230bdbc534SSatish Balay           value = v + j * (stepval + bs) * bs + i * bs;
624fef45726SSatish Balay           if (addv == ADD_VALUES) {
625b4cc0f5aSSatish Balay             for (ii = 0; ii < bs; ii++, value += stepval, baij_a += bs) {
626ad540459SPierre Jolivet               for (jj = 0; jj < bs; jj++) baij_a[jj] += *value++;
627fef45726SSatish Balay             }
628fef45726SSatish Balay           } else {
629fef45726SSatish Balay             for (ii = 0; ii < bs; ii++, value += stepval, baij_a += bs) {
630ad540459SPierre Jolivet               for (jj = 0; jj < bs; jj++) baij_a[jj] = *value++;
631b4cc0f5aSSatish Balay             }
6320bdbc534SSatish Balay           }
6330bdbc534SSatish Balay         }
6340bdbc534SSatish Balay       }
6350bdbc534SSatish Balay     } else {
6360bdbc534SSatish Balay       if (!baij->donotstash) {
6370bdbc534SSatish Balay         if (roworiented) {
6389566063dSJacob Faibussowitsch           PetscCall(MatStashValuesRowBlocked_Private(&mat->bstash, im[i], n, in, v, m, n, i));
6390bdbc534SSatish Balay         } else {
6409566063dSJacob Faibussowitsch           PetscCall(MatStashValuesColBlocked_Private(&mat->bstash, im[i], n, in, v, m, n, i));
6410bdbc534SSatish Balay         }
6420bdbc534SSatish Balay       }
6430bdbc534SSatish Balay     }
6440bdbc534SSatish Balay   }
64576bd3646SJed Brown   if (PetscDefined(USE_DEBUG)) {
646abf3b562SBarry Smith     baij->ht_total_ct += total_ct;
647abf3b562SBarry Smith     baij->ht_insert_ct += insert_ct;
64876bd3646SJed Brown   }
6493ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6500bdbc534SSatish Balay }
651133cdb44SSatish Balay 
65266976f2fSJacob Faibussowitsch static PetscErrorCode MatGetValues_MPIBAIJ(Mat mat, PetscInt m, const PetscInt idxm[], PetscInt n, const PetscInt idxn[], PetscScalar v[])
653d71ae5a4SJacob Faibussowitsch {
654d6de1c52SSatish Balay   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data;
655d0f46423SBarry Smith   PetscInt     bs = mat->rmap->bs, i, j, bsrstart = mat->rmap->rstart, bsrend = mat->rmap->rend;
656d0f46423SBarry Smith   PetscInt     bscstart = mat->cmap->rstart, bscend = mat->cmap->rend, row, col, data;
657d6de1c52SSatish Balay 
658133cdb44SSatish Balay   PetscFunctionBegin;
659d6de1c52SSatish Balay   for (i = 0; i < m; i++) {
66054c59aa7SJacob Faibussowitsch     if (idxm[i] < 0) continue; /* negative row */
66154c59aa7SJacob Faibussowitsch     PetscCheck(idxm[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, idxm[i], mat->rmap->N - 1);
662d6de1c52SSatish Balay     if (idxm[i] >= bsrstart && idxm[i] < bsrend) {
663d6de1c52SSatish Balay       row = idxm[i] - bsrstart;
664d6de1c52SSatish Balay       for (j = 0; j < n; j++) {
66554c59aa7SJacob Faibussowitsch         if (idxn[j] < 0) continue; /* negative column */
66654c59aa7SJacob Faibussowitsch         PetscCheck(idxn[j] < mat->cmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, idxn[j], mat->cmap->N - 1);
667d6de1c52SSatish Balay         if (idxn[j] >= bscstart && idxn[j] < bscend) {
668d6de1c52SSatish Balay           col = idxn[j] - bscstart;
6699566063dSJacob Faibussowitsch           PetscCall(MatGetValues_SeqBAIJ(baij->A, 1, &row, 1, &col, v + i * n + j));
670d64ed03dSBarry Smith         } else {
67148a46eb9SPierre Jolivet           if (!baij->colmap) PetscCall(MatCreateColmap_MPIBAIJ_Private(mat));
672aa482453SBarry Smith #if defined(PETSC_USE_CTABLE)
673eec179cfSJacob Faibussowitsch           PetscCall(PetscHMapIGetWithDefault(baij->colmap, idxn[j] / bs + 1, 0, &data));
674fa46199cSSatish Balay           data--;
67548e59246SSatish Balay #else
67648e59246SSatish Balay           data = baij->colmap[idxn[j] / bs] - 1;
67748e59246SSatish Balay #endif
67848e59246SSatish Balay           if ((data < 0) || (baij->garray[data / bs] != idxn[j] / bs)) *(v + i * n + j) = 0.0;
679d9d09a02SSatish Balay           else {
68048e59246SSatish Balay             col = data + idxn[j] % bs;
6819566063dSJacob Faibussowitsch             PetscCall(MatGetValues_SeqBAIJ(baij->B, 1, &row, 1, &col, v + i * n + j));
682d6de1c52SSatish Balay           }
683d6de1c52SSatish Balay         }
684d6de1c52SSatish Balay       }
685f23aa3ddSBarry Smith     } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "Only local values currently supported");
686d6de1c52SSatish Balay   }
6873ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
688d6de1c52SSatish Balay }
689d6de1c52SSatish Balay 
69066976f2fSJacob Faibussowitsch static PetscErrorCode MatNorm_MPIBAIJ(Mat mat, NormType type, PetscReal *nrm)
691d71ae5a4SJacob Faibussowitsch {
692d6de1c52SSatish Balay   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data;
693d6de1c52SSatish Balay   Mat_SeqBAIJ *amat = (Mat_SeqBAIJ *)baij->A->data, *bmat = (Mat_SeqBAIJ *)baij->B->data;
694d0f46423SBarry Smith   PetscInt     i, j, bs2 = baij->bs2, bs = baij->A->rmap->bs, nz, row, col;
695329f5518SBarry Smith   PetscReal    sum = 0.0;
6963eda8832SBarry Smith   MatScalar   *v;
697d6de1c52SSatish Balay 
698d64ed03dSBarry Smith   PetscFunctionBegin;
699d6de1c52SSatish Balay   if (baij->size == 1) {
7009566063dSJacob Faibussowitsch     PetscCall(MatNorm(baij->A, type, nrm));
701d6de1c52SSatish Balay   } else {
702d6de1c52SSatish Balay     if (type == NORM_FROBENIUS) {
703d6de1c52SSatish Balay       v  = amat->a;
7048a62d963SHong Zhang       nz = amat->nz * bs2;
7058a62d963SHong Zhang       for (i = 0; i < nz; i++) {
7069371c9d4SSatish Balay         sum += PetscRealPart(PetscConj(*v) * (*v));
7079371c9d4SSatish Balay         v++;
708d6de1c52SSatish Balay       }
709d6de1c52SSatish Balay       v  = bmat->a;
7108a62d963SHong Zhang       nz = bmat->nz * bs2;
7118a62d963SHong Zhang       for (i = 0; i < nz; i++) {
7129371c9d4SSatish Balay         sum += PetscRealPart(PetscConj(*v) * (*v));
7139371c9d4SSatish Balay         v++;
714d6de1c52SSatish Balay       }
715462c564dSBarry Smith       PetscCallMPI(MPIU_Allreduce(&sum, nrm, 1, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)mat)));
7168f1a2a5eSBarry Smith       *nrm = PetscSqrtReal(*nrm);
7178a62d963SHong Zhang     } else if (type == NORM_1) { /* max column sum */
718e91c04dfSPierre Jolivet       PetscReal *tmp;
719899cda47SBarry Smith       PetscInt  *jj, *garray = baij->garray, cstart = baij->rstartbs;
7206497c311SBarry Smith 
7219566063dSJacob Faibussowitsch       PetscCall(PetscCalloc1(mat->cmap->N, &tmp));
7229371c9d4SSatish Balay       v  = amat->a;
7239371c9d4SSatish Balay       jj = amat->j;
7248a62d963SHong Zhang       for (i = 0; i < amat->nz; i++) {
7258a62d963SHong Zhang         for (j = 0; j < bs; j++) {
7268a62d963SHong Zhang           col = bs * (cstart + *jj) + j; /* column index */
7278a62d963SHong Zhang           for (row = 0; row < bs; row++) {
7289371c9d4SSatish Balay             tmp[col] += PetscAbsScalar(*v);
7299371c9d4SSatish Balay             v++;
7308a62d963SHong Zhang           }
7318a62d963SHong Zhang         }
7328a62d963SHong Zhang         jj++;
7338a62d963SHong Zhang       }
7349371c9d4SSatish Balay       v  = bmat->a;
7359371c9d4SSatish Balay       jj = bmat->j;
7368a62d963SHong Zhang       for (i = 0; i < bmat->nz; i++) {
7378a62d963SHong Zhang         for (j = 0; j < bs; j++) {
7388a62d963SHong Zhang           col = bs * garray[*jj] + j;
7398a62d963SHong Zhang           for (row = 0; row < bs; row++) {
7409371c9d4SSatish Balay             tmp[col] += PetscAbsScalar(*v);
7419371c9d4SSatish Balay             v++;
7428a62d963SHong Zhang           }
7438a62d963SHong Zhang         }
7448a62d963SHong Zhang         jj++;
7458a62d963SHong Zhang       }
746e91c04dfSPierre Jolivet       PetscCallMPI(MPIU_Allreduce(MPI_IN_PLACE, tmp, mat->cmap->N, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)mat)));
7478a62d963SHong Zhang       *nrm = 0.0;
748d0f46423SBarry Smith       for (j = 0; j < mat->cmap->N; j++) {
749e91c04dfSPierre Jolivet         if (tmp[j] > *nrm) *nrm = tmp[j];
7508a62d963SHong Zhang       }
7519566063dSJacob Faibussowitsch       PetscCall(PetscFree(tmp));
7528a62d963SHong Zhang     } else if (type == NORM_INFINITY) { /* max row sum */
753577dd1f9SKris Buschelman       PetscReal *sums;
7549566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(bs, &sums));
7558a62d963SHong Zhang       sum = 0.0;
7568a62d963SHong Zhang       for (j = 0; j < amat->mbs; j++) {
7578a62d963SHong Zhang         for (row = 0; row < bs; row++) sums[row] = 0.0;
7588a62d963SHong Zhang         v  = amat->a + bs2 * amat->i[j];
7598a62d963SHong Zhang         nz = amat->i[j + 1] - amat->i[j];
7608a62d963SHong Zhang         for (i = 0; i < nz; i++) {
7618a62d963SHong Zhang           for (col = 0; col < bs; col++) {
7628a62d963SHong Zhang             for (row = 0; row < bs; row++) {
7639371c9d4SSatish Balay               sums[row] += PetscAbsScalar(*v);
7649371c9d4SSatish Balay               v++;
7658a62d963SHong Zhang             }
7668a62d963SHong Zhang           }
7678a62d963SHong Zhang         }
7688a62d963SHong Zhang         v  = bmat->a + bs2 * bmat->i[j];
7698a62d963SHong Zhang         nz = bmat->i[j + 1] - bmat->i[j];
7708a62d963SHong Zhang         for (i = 0; i < nz; i++) {
7718a62d963SHong Zhang           for (col = 0; col < bs; col++) {
7728a62d963SHong Zhang             for (row = 0; row < bs; row++) {
7739371c9d4SSatish Balay               sums[row] += PetscAbsScalar(*v);
7749371c9d4SSatish Balay               v++;
7758a62d963SHong Zhang             }
7768a62d963SHong Zhang           }
7778a62d963SHong Zhang         }
7788a62d963SHong Zhang         for (row = 0; row < bs; row++) {
7798a62d963SHong Zhang           if (sums[row] > sum) sum = sums[row];
7808a62d963SHong Zhang         }
7818a62d963SHong Zhang       }
782462c564dSBarry Smith       PetscCallMPI(MPIU_Allreduce(&sum, nrm, 1, MPIU_REAL, MPIU_MAX, PetscObjectComm((PetscObject)mat)));
7839566063dSJacob Faibussowitsch       PetscCall(PetscFree(sums));
784ce94432eSBarry Smith     } else SETERRQ(PetscObjectComm((PetscObject)mat), PETSC_ERR_SUP, "No support for this norm yet");
785d64ed03dSBarry Smith   }
7863ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
787d6de1c52SSatish Balay }
78857b952d6SSatish Balay 
789fef45726SSatish Balay /*
790fef45726SSatish Balay   Creates the hash table, and sets the table
791fef45726SSatish Balay   This table is created only once.
792fef45726SSatish Balay   If new entried need to be added to the matrix
793fef45726SSatish Balay   then the hash table has to be destroyed and
794fef45726SSatish Balay   recreated.
795fef45726SSatish Balay */
79666976f2fSJacob Faibussowitsch static PetscErrorCode MatCreateHashTable_MPIBAIJ_Private(Mat mat, PetscReal factor)
797d71ae5a4SJacob Faibussowitsch {
798596b8d2eSBarry Smith   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data;
799596b8d2eSBarry Smith   Mat          A = baij->A, B = baij->B;
800596b8d2eSBarry Smith   Mat_SeqBAIJ *a = (Mat_SeqBAIJ *)A->data, *b = (Mat_SeqBAIJ *)B->data;
801b24ad042SBarry Smith   PetscInt     i, j, k, nz = a->nz + b->nz, h1, *ai = a->i, *aj = a->j, *bi = b->i, *bj = b->j;
802fca92195SBarry Smith   PetscInt     ht_size, bs2 = baij->bs2, rstart = baij->rstartbs;
803899cda47SBarry Smith   PetscInt     cstart = baij->cstartbs, *garray = baij->garray, row, col, Nbs = baij->Nbs;
804b24ad042SBarry Smith   PetscInt    *HT, key;
8053eda8832SBarry Smith   MatScalar  **HD;
806329f5518SBarry Smith   PetscReal    tmp;
8076cf91177SBarry Smith #if defined(PETSC_USE_INFO)
808b24ad042SBarry Smith   PetscInt ct = 0, max = 0;
8094a15367fSSatish Balay #endif
810fef45726SSatish Balay 
811d64ed03dSBarry Smith   PetscFunctionBegin;
8123ba16761SJacob Faibussowitsch   if (baij->ht) PetscFunctionReturn(PETSC_SUCCESS);
813fef45726SSatish Balay 
814fca92195SBarry Smith   baij->ht_size = (PetscInt)(factor * nz);
815fca92195SBarry Smith   ht_size       = baij->ht_size;
8160bdbc534SSatish Balay 
817fef45726SSatish Balay   /* Allocate Memory for Hash Table */
8189566063dSJacob Faibussowitsch   PetscCall(PetscCalloc2(ht_size, &baij->hd, ht_size, &baij->ht));
819b9e4cc15SSatish Balay   HD = baij->hd;
820a07cd24cSSatish Balay   HT = baij->ht;
821b9e4cc15SSatish Balay 
822596b8d2eSBarry Smith   /* Loop Over A */
8230bdbc534SSatish Balay   for (i = 0; i < a->mbs; i++) {
824596b8d2eSBarry Smith     for (j = ai[i]; j < ai[i + 1]; j++) {
8250bdbc534SSatish Balay       row = i + rstart;
8260bdbc534SSatish Balay       col = aj[j] + cstart;
827596b8d2eSBarry Smith 
828187ce0cbSSatish Balay       key = row * Nbs + col + 1;
829fca92195SBarry Smith       h1  = HASH(ht_size, key, tmp);
830fca92195SBarry Smith       for (k = 0; k < ht_size; k++) {
831fca92195SBarry Smith         if (!HT[(h1 + k) % ht_size]) {
832fca92195SBarry Smith           HT[(h1 + k) % ht_size] = key;
833fca92195SBarry Smith           HD[(h1 + k) % ht_size] = a->a + j * bs2;
834596b8d2eSBarry Smith           break;
8356cf91177SBarry Smith #if defined(PETSC_USE_INFO)
836187ce0cbSSatish Balay         } else {
837187ce0cbSSatish Balay           ct++;
838187ce0cbSSatish Balay #endif
839596b8d2eSBarry Smith         }
840187ce0cbSSatish Balay       }
8416cf91177SBarry Smith #if defined(PETSC_USE_INFO)
842187ce0cbSSatish Balay       if (k > max) max = k;
843187ce0cbSSatish Balay #endif
844596b8d2eSBarry Smith     }
845596b8d2eSBarry Smith   }
846596b8d2eSBarry Smith   /* Loop Over B */
8470bdbc534SSatish Balay   for (i = 0; i < b->mbs; i++) {
848596b8d2eSBarry Smith     for (j = bi[i]; j < bi[i + 1]; j++) {
8490bdbc534SSatish Balay       row = i + rstart;
8500bdbc534SSatish Balay       col = garray[bj[j]];
851187ce0cbSSatish Balay       key = row * Nbs + col + 1;
852fca92195SBarry Smith       h1  = HASH(ht_size, key, tmp);
853fca92195SBarry Smith       for (k = 0; k < ht_size; k++) {
854fca92195SBarry Smith         if (!HT[(h1 + k) % ht_size]) {
855fca92195SBarry Smith           HT[(h1 + k) % ht_size] = key;
856fca92195SBarry Smith           HD[(h1 + k) % ht_size] = b->a + j * bs2;
857596b8d2eSBarry Smith           break;
8586cf91177SBarry Smith #if defined(PETSC_USE_INFO)
859187ce0cbSSatish Balay         } else {
860187ce0cbSSatish Balay           ct++;
861187ce0cbSSatish Balay #endif
862596b8d2eSBarry Smith         }
863187ce0cbSSatish Balay       }
8646cf91177SBarry Smith #if defined(PETSC_USE_INFO)
865187ce0cbSSatish Balay       if (k > max) max = k;
866187ce0cbSSatish Balay #endif
867596b8d2eSBarry Smith     }
868596b8d2eSBarry Smith   }
869596b8d2eSBarry Smith 
870596b8d2eSBarry Smith   /* Print Summary */
8716cf91177SBarry Smith #if defined(PETSC_USE_INFO)
872fca92195SBarry Smith   for (i = 0, j = 0; i < ht_size; i++) {
87326fbe8dcSKarl Rupp     if (HT[i]) j++;
874c38d4ed2SBarry Smith   }
875835f2295SStefano Zampini   PetscCall(PetscInfo(mat, "Average Search = %5.2g,max search = %" PetscInt_FMT "\n", (!j) ? 0.0 : (double)(((PetscReal)(ct + j)) / j), max));
876187ce0cbSSatish Balay #endif
8773ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
878596b8d2eSBarry Smith }
87957b952d6SSatish Balay 
88066976f2fSJacob Faibussowitsch static PetscErrorCode MatAssemblyBegin_MPIBAIJ(Mat mat, MatAssemblyType mode)
881d71ae5a4SJacob Faibussowitsch {
882bbb85fb3SSatish Balay   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data;
883b24ad042SBarry Smith   PetscInt     nstash, reallocs;
884bbb85fb3SSatish Balay 
885bbb85fb3SSatish Balay   PetscFunctionBegin;
8863ba16761SJacob Faibussowitsch   if (baij->donotstash || mat->nooffprocentries) PetscFunctionReturn(PETSC_SUCCESS);
887bbb85fb3SSatish Balay 
8889566063dSJacob Faibussowitsch   PetscCall(MatStashScatterBegin_Private(mat, &mat->stash, mat->rmap->range));
8899566063dSJacob Faibussowitsch   PetscCall(MatStashScatterBegin_Private(mat, &mat->bstash, baij->rangebs));
8909566063dSJacob Faibussowitsch   PetscCall(MatStashGetInfo_Private(&mat->stash, &nstash, &reallocs));
8919566063dSJacob Faibussowitsch   PetscCall(PetscInfo(mat, "Stash has %" PetscInt_FMT " entries,uses %" PetscInt_FMT " mallocs.\n", nstash, reallocs));
8929566063dSJacob Faibussowitsch   PetscCall(MatStashGetInfo_Private(&mat->bstash, &nstash, &reallocs));
8939566063dSJacob Faibussowitsch   PetscCall(PetscInfo(mat, "Block-Stash has %" PetscInt_FMT " entries, uses %" PetscInt_FMT " mallocs.\n", nstash, reallocs));
8943ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
895bbb85fb3SSatish Balay }
896bbb85fb3SSatish Balay 
89766976f2fSJacob Faibussowitsch static PetscErrorCode MatAssemblyEnd_MPIBAIJ(Mat mat, MatAssemblyType mode)
898d71ae5a4SJacob Faibussowitsch {
899bbb85fb3SSatish Balay   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data;
90091c97fd4SSatish Balay   Mat_SeqBAIJ *a    = (Mat_SeqBAIJ *)baij->A->data;
901b24ad042SBarry Smith   PetscInt     i, j, rstart, ncols, flg, bs2 = baij->bs2;
902e44c0bd4SBarry Smith   PetscInt    *row, *col;
903ace3abfcSBarry Smith   PetscBool    r1, r2, r3, other_disassembled;
9043eda8832SBarry Smith   MatScalar   *val;
905b24ad042SBarry Smith   PetscMPIInt  n;
906bbb85fb3SSatish Balay 
907bbb85fb3SSatish Balay   PetscFunctionBegin;
9085fd66863SKarl Rupp   /* do not use 'b=(Mat_SeqBAIJ*)baij->B->data' as B can be reset in disassembly */
9094cb17eb5SBarry Smith   if (!baij->donotstash && !mat->nooffprocentries) {
910a2d1c673SSatish Balay     while (1) {
9119566063dSJacob Faibussowitsch       PetscCall(MatStashScatterGetMesg_Private(&mat->stash, &n, &row, &col, &val, &flg));
912a2d1c673SSatish Balay       if (!flg) break;
913a2d1c673SSatish Balay 
914bbb85fb3SSatish Balay       for (i = 0; i < n;) {
915bbb85fb3SSatish Balay         /* Now identify the consecutive vals belonging to the same row */
91626fbe8dcSKarl Rupp         for (j = i, rstart = row[j]; j < n; j++) {
91726fbe8dcSKarl Rupp           if (row[j] != rstart) break;
91826fbe8dcSKarl Rupp         }
919bbb85fb3SSatish Balay         if (j < n) ncols = j - i;
920bbb85fb3SSatish Balay         else ncols = n - i;
921bbb85fb3SSatish Balay         /* Now assemble all these values with a single function call */
9229566063dSJacob Faibussowitsch         PetscCall(MatSetValues_MPIBAIJ(mat, 1, row + i, ncols, col + i, val + i, mat->insertmode));
923bbb85fb3SSatish Balay         i = j;
924bbb85fb3SSatish Balay       }
925bbb85fb3SSatish Balay     }
9269566063dSJacob Faibussowitsch     PetscCall(MatStashScatterEnd_Private(&mat->stash));
927a2d1c673SSatish Balay     /* Now process the block-stash. Since the values are stashed column-oriented,
9285e116b59SBarry Smith        set the row-oriented flag to column-oriented, and after MatSetValues()
929a2d1c673SSatish Balay        restore the original flags */
930a2d1c673SSatish Balay     r1 = baij->roworiented;
931a2d1c673SSatish Balay     r2 = a->roworiented;
93291c97fd4SSatish Balay     r3 = ((Mat_SeqBAIJ *)baij->B->data)->roworiented;
93326fbe8dcSKarl Rupp 
9347c922b88SBarry Smith     baij->roworiented                           = PETSC_FALSE;
9357c922b88SBarry Smith     a->roworiented                              = PETSC_FALSE;
936f4f49eeaSPierre Jolivet     ((Mat_SeqBAIJ *)baij->B->data)->roworiented = PETSC_FALSE;
937a2d1c673SSatish Balay     while (1) {
9389566063dSJacob Faibussowitsch       PetscCall(MatStashScatterGetMesg_Private(&mat->bstash, &n, &row, &col, &val, &flg));
939a2d1c673SSatish Balay       if (!flg) break;
940a2d1c673SSatish Balay 
941a2d1c673SSatish Balay       for (i = 0; i < n;) {
942a2d1c673SSatish Balay         /* Now identify the consecutive vals belonging to the same row */
94326fbe8dcSKarl Rupp         for (j = i, rstart = row[j]; j < n; j++) {
94426fbe8dcSKarl Rupp           if (row[j] != rstart) break;
94526fbe8dcSKarl Rupp         }
946a2d1c673SSatish Balay         if (j < n) ncols = j - i;
947a2d1c673SSatish Balay         else ncols = n - i;
9489566063dSJacob Faibussowitsch         PetscCall(MatSetValuesBlocked_MPIBAIJ(mat, 1, row + i, ncols, col + i, val + i * bs2, mat->insertmode));
949a2d1c673SSatish Balay         i = j;
950a2d1c673SSatish Balay       }
951a2d1c673SSatish Balay     }
9529566063dSJacob Faibussowitsch     PetscCall(MatStashScatterEnd_Private(&mat->bstash));
95326fbe8dcSKarl Rupp 
954a2d1c673SSatish Balay     baij->roworiented                           = r1;
955a2d1c673SSatish Balay     a->roworiented                              = r2;
9565e116b59SBarry Smith     ((Mat_SeqBAIJ *)baij->B->data)->roworiented = r3;
957bbb85fb3SSatish Balay   }
958bbb85fb3SSatish Balay 
9599566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(baij->A, mode));
9609566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(baij->A, mode));
961bbb85fb3SSatish Balay 
962bbb85fb3SSatish Balay   /* determine if any processor has disassembled, if so we must
9636aad120cSJose E. Roman      also disassemble ourselves, in order that we may reassemble. */
964bbb85fb3SSatish Balay   /*
965bbb85fb3SSatish Balay      if nonzero structure of submatrix B cannot change then we know that
966bbb85fb3SSatish Balay      no processor disassembled thus we can skip this stuff
967bbb85fb3SSatish Balay   */
968bbb85fb3SSatish Balay   if (!((Mat_SeqBAIJ *)baij->B->data)->nonew) {
969462c564dSBarry Smith     PetscCallMPI(MPIU_Allreduce(&mat->was_assembled, &other_disassembled, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)mat)));
97048a46eb9SPierre Jolivet     if (mat->was_assembled && !other_disassembled) PetscCall(MatDisAssemble_MPIBAIJ(mat));
971bbb85fb3SSatish Balay   }
972bbb85fb3SSatish Balay 
97348a46eb9SPierre Jolivet   if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) PetscCall(MatSetUpMultiply_MPIBAIJ(mat));
9749566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(baij->B, mode));
9759566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(baij->B, mode));
976bbb85fb3SSatish Balay 
9776cf91177SBarry Smith #if defined(PETSC_USE_INFO)
978bbb85fb3SSatish Balay   if (baij->ht && mode == MAT_FINAL_ASSEMBLY) {
9799566063dSJacob Faibussowitsch     PetscCall(PetscInfo(mat, "Average Hash Table Search in MatSetValues = %5.2f\n", (double)((PetscReal)baij->ht_total_ct) / baij->ht_insert_ct));
98026fbe8dcSKarl Rupp 
981bbb85fb3SSatish Balay     baij->ht_total_ct  = 0;
982bbb85fb3SSatish Balay     baij->ht_insert_ct = 0;
983bbb85fb3SSatish Balay   }
984bbb85fb3SSatish Balay #endif
985bbb85fb3SSatish Balay   if (baij->ht_flag && !baij->ht && mode == MAT_FINAL_ASSEMBLY) {
9869566063dSJacob Faibussowitsch     PetscCall(MatCreateHashTable_MPIBAIJ_Private(mat, baij->ht_fact));
98726fbe8dcSKarl Rupp 
988bbb85fb3SSatish Balay     mat->ops->setvalues        = MatSetValues_MPIBAIJ_HT;
989bbb85fb3SSatish Balay     mat->ops->setvaluesblocked = MatSetValuesBlocked_MPIBAIJ_HT;
990bbb85fb3SSatish Balay   }
991bbb85fb3SSatish Balay 
9929566063dSJacob Faibussowitsch   PetscCall(PetscFree2(baij->rowvalues, baij->rowindices));
99326fbe8dcSKarl Rupp 
994f4259b30SLisandro Dalcin   baij->rowvalues = NULL;
9954f9cfa9eSBarry Smith 
9964f9cfa9eSBarry Smith   /* if no new nonzero locations are allowed in matrix then only set the matrix state the first time through */
997f4f49eeaSPierre Jolivet   if ((!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) || !((Mat_SeqBAIJ *)baij->A->data)->nonew) {
998e56f5c9eSBarry Smith     PetscObjectState state = baij->A->nonzerostate + baij->B->nonzerostate;
999462c564dSBarry Smith     PetscCallMPI(MPIU_Allreduce(&state, &mat->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)mat)));
1000e56f5c9eSBarry Smith   }
10013ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1002bbb85fb3SSatish Balay }
100357b952d6SSatish Balay 
10047da1fb6eSBarry Smith extern PetscErrorCode MatView_SeqBAIJ(Mat, PetscViewer);
10059804daf3SBarry Smith #include <petscdraw.h>
1006d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatView_MPIBAIJ_ASCIIorDraworSocket(Mat mat, PetscViewer viewer)
1007d71ae5a4SJacob Faibussowitsch {
100857b952d6SSatish Balay   Mat_MPIBAIJ      *baij = (Mat_MPIBAIJ *)mat->data;
10097da1fb6eSBarry Smith   PetscMPIInt       rank = baij->rank;
1010d0f46423SBarry Smith   PetscInt          bs   = mat->rmap->bs;
1011ace3abfcSBarry Smith   PetscBool         iascii, isdraw;
1012b0a32e0cSBarry Smith   PetscViewer       sviewer;
1013f3ef73ceSBarry Smith   PetscViewerFormat format;
101457b952d6SSatish Balay 
1015d64ed03dSBarry Smith   PetscFunctionBegin;
10169566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &iascii));
10179566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERDRAW, &isdraw));
101832077d6dSBarry Smith   if (iascii) {
10199566063dSJacob Faibussowitsch     PetscCall(PetscViewerGetFormat(viewer, &format));
1020456192e2SBarry Smith     if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) {
10214e220ebcSLois Curfman McInnes       MatInfo info;
10229566063dSJacob Faibussowitsch       PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)mat), &rank));
10239566063dSJacob Faibussowitsch       PetscCall(MatGetInfo(mat, MAT_LOCAL, &info));
10249566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPushSynchronized(viewer));
10259371c9d4SSatish Balay       PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] Local rows %" PetscInt_FMT " nz %" PetscInt_FMT " nz alloced %" PetscInt_FMT " bs %" PetscInt_FMT " mem %g\n", rank, mat->rmap->n, (PetscInt)info.nz_used, (PetscInt)info.nz_allocated,
1026835f2295SStefano Zampini                                                    mat->rmap->bs, info.memory));
10279566063dSJacob Faibussowitsch       PetscCall(MatGetInfo(baij->A, MAT_LOCAL, &info));
10289566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] on-diagonal part: nz %" PetscInt_FMT " \n", rank, (PetscInt)info.nz_used));
10299566063dSJacob Faibussowitsch       PetscCall(MatGetInfo(baij->B, MAT_LOCAL, &info));
10309566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] off-diagonal part: nz %" PetscInt_FMT " \n", rank, (PetscInt)info.nz_used));
10319566063dSJacob Faibussowitsch       PetscCall(PetscViewerFlush(viewer));
10329566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPopSynchronized(viewer));
10339566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPrintf(viewer, "Information on VecScatter used in matrix-vector product: \n"));
10349566063dSJacob Faibussowitsch       PetscCall(VecScatterView(baij->Mvctx, viewer));
10353ba16761SJacob Faibussowitsch       PetscFunctionReturn(PETSC_SUCCESS);
1036fb9695e5SSatish Balay     } else if (format == PETSC_VIEWER_ASCII_INFO) {
10379566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPrintf(viewer, "  block size is %" PetscInt_FMT "\n", bs));
10383ba16761SJacob Faibussowitsch       PetscFunctionReturn(PETSC_SUCCESS);
103904929863SHong Zhang     } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) {
10403ba16761SJacob Faibussowitsch       PetscFunctionReturn(PETSC_SUCCESS);
104157b952d6SSatish Balay     }
104257b952d6SSatish Balay   }
104357b952d6SSatish Balay 
10440f5bd95cSBarry Smith   if (isdraw) {
1045b0a32e0cSBarry Smith     PetscDraw draw;
1046ace3abfcSBarry Smith     PetscBool isnull;
10479566063dSJacob Faibussowitsch     PetscCall(PetscViewerDrawGetDraw(viewer, 0, &draw));
10489566063dSJacob Faibussowitsch     PetscCall(PetscDrawIsNull(draw, &isnull));
10493ba16761SJacob Faibussowitsch     if (isnull) PetscFunctionReturn(PETSC_SUCCESS);
105057b952d6SSatish Balay   }
105157b952d6SSatish Balay 
10527da1fb6eSBarry Smith   {
105357b952d6SSatish Balay     /* assemble the entire matrix onto first processor. */
105457b952d6SSatish Balay     Mat          A;
105557b952d6SSatish Balay     Mat_SeqBAIJ *Aloc;
1056d0f46423SBarry Smith     PetscInt     M = mat->rmap->N, N = mat->cmap->N, *ai, *aj, col, i, j, k, *rvals, mbs = baij->mbs;
10573eda8832SBarry Smith     MatScalar   *a;
10583e219373SBarry Smith     const char  *matname;
105957b952d6SSatish Balay 
1060f204ca49SKris Buschelman     /* Here we are creating a temporary matrix, so will assume MPIBAIJ is acceptable */
1061f204ca49SKris Buschelman     /* Perhaps this should be the type of mat? */
10629566063dSJacob Faibussowitsch     PetscCall(MatCreate(PetscObjectComm((PetscObject)mat), &A));
1063dd400576SPatrick Sanan     if (rank == 0) {
10649566063dSJacob Faibussowitsch       PetscCall(MatSetSizes(A, M, N, M, N));
1065d64ed03dSBarry Smith     } else {
10669566063dSJacob Faibussowitsch       PetscCall(MatSetSizes(A, 0, 0, M, N));
106757b952d6SSatish Balay     }
10689566063dSJacob Faibussowitsch     PetscCall(MatSetType(A, MATMPIBAIJ));
10699566063dSJacob Faibussowitsch     PetscCall(MatMPIBAIJSetPreallocation(A, mat->rmap->bs, 0, NULL, 0, NULL));
10709566063dSJacob Faibussowitsch     PetscCall(MatSetOption(A, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_FALSE));
107157b952d6SSatish Balay 
107257b952d6SSatish Balay     /* copy over the A part */
107357b952d6SSatish Balay     Aloc = (Mat_SeqBAIJ *)baij->A->data;
10749371c9d4SSatish Balay     ai   = Aloc->i;
10759371c9d4SSatish Balay     aj   = Aloc->j;
10769371c9d4SSatish Balay     a    = Aloc->a;
10779566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(bs, &rvals));
107857b952d6SSatish Balay 
107957b952d6SSatish Balay     for (i = 0; i < mbs; i++) {
1080899cda47SBarry Smith       rvals[0] = bs * (baij->rstartbs + i);
108126fbe8dcSKarl Rupp       for (j = 1; j < bs; j++) rvals[j] = rvals[j - 1] + 1;
108257b952d6SSatish Balay       for (j = ai[i]; j < ai[i + 1]; j++) {
1083899cda47SBarry Smith         col = (baij->cstartbs + aj[j]) * bs;
108457b952d6SSatish Balay         for (k = 0; k < bs; k++) {
10859566063dSJacob Faibussowitsch           PetscCall(MatSetValues_MPIBAIJ(A, bs, rvals, 1, &col, a, INSERT_VALUES));
10869371c9d4SSatish Balay           col++;
10879371c9d4SSatish Balay           a += bs;
108857b952d6SSatish Balay         }
108957b952d6SSatish Balay       }
109057b952d6SSatish Balay     }
109157b952d6SSatish Balay     /* copy over the B part */
109257b952d6SSatish Balay     Aloc = (Mat_SeqBAIJ *)baij->B->data;
10939371c9d4SSatish Balay     ai   = Aloc->i;
10949371c9d4SSatish Balay     aj   = Aloc->j;
10959371c9d4SSatish Balay     a    = Aloc->a;
109657b952d6SSatish Balay     for (i = 0; i < mbs; i++) {
1097899cda47SBarry Smith       rvals[0] = bs * (baij->rstartbs + i);
109826fbe8dcSKarl Rupp       for (j = 1; j < bs; j++) rvals[j] = rvals[j - 1] + 1;
109957b952d6SSatish Balay       for (j = ai[i]; j < ai[i + 1]; j++) {
110057b952d6SSatish Balay         col = baij->garray[aj[j]] * bs;
110157b952d6SSatish Balay         for (k = 0; k < bs; k++) {
11029566063dSJacob Faibussowitsch           PetscCall(MatSetValues_MPIBAIJ(A, bs, rvals, 1, &col, a, INSERT_VALUES));
11039371c9d4SSatish Balay           col++;
11049371c9d4SSatish Balay           a += bs;
110557b952d6SSatish Balay         }
110657b952d6SSatish Balay       }
110757b952d6SSatish Balay     }
11089566063dSJacob Faibussowitsch     PetscCall(PetscFree(rvals));
11099566063dSJacob Faibussowitsch     PetscCall(MatAssemblyBegin(A, MAT_FINAL_ASSEMBLY));
11109566063dSJacob Faibussowitsch     PetscCall(MatAssemblyEnd(A, MAT_FINAL_ASSEMBLY));
111155843e3eSBarry Smith     /*
111255843e3eSBarry Smith        Everyone has to call to draw the matrix since the graphics waits are
1113b0a32e0cSBarry Smith        synchronized across all processors that share the PetscDraw object
111455843e3eSBarry Smith     */
11159566063dSJacob Faibussowitsch     PetscCall(PetscViewerGetSubViewer(viewer, PETSC_COMM_SELF, &sviewer));
111623a3927dSBarry Smith     if (((PetscObject)mat)->name) PetscCall(PetscObjectGetName((PetscObject)mat, &matname));
1117dd400576SPatrick Sanan     if (rank == 0) {
1118f4f49eeaSPierre Jolivet       if (((PetscObject)mat)->name) PetscCall(PetscObjectSetName((PetscObject)((Mat_MPIBAIJ *)A->data)->A, matname));
1119f4f49eeaSPierre Jolivet       PetscCall(MatView_SeqBAIJ(((Mat_MPIBAIJ *)A->data)->A, sviewer));
112057b952d6SSatish Balay     }
11219566063dSJacob Faibussowitsch     PetscCall(PetscViewerRestoreSubViewer(viewer, PETSC_COMM_SELF, &sviewer));
11229566063dSJacob Faibussowitsch     PetscCall(MatDestroy(&A));
112357b952d6SSatish Balay   }
11243ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
112557b952d6SSatish Balay }
112657b952d6SSatish Balay 
1127618cc2edSLisandro Dalcin /* Used for both MPIBAIJ and MPISBAIJ matrices */
1128d71ae5a4SJacob Faibussowitsch PetscErrorCode MatView_MPIBAIJ_Binary(Mat mat, PetscViewer viewer)
1129d71ae5a4SJacob Faibussowitsch {
1130b51a4376SLisandro Dalcin   Mat_MPIBAIJ    *aij    = (Mat_MPIBAIJ *)mat->data;
1131b51a4376SLisandro Dalcin   Mat_SeqBAIJ    *A      = (Mat_SeqBAIJ *)aij->A->data;
1132b51a4376SLisandro Dalcin   Mat_SeqBAIJ    *B      = (Mat_SeqBAIJ *)aij->B->data;
1133b51a4376SLisandro Dalcin   const PetscInt *garray = aij->garray;
113417a3732bSBarry Smith   PetscInt        header[4], M, N, m, rs, cs, bs, cnt, i, j, ja, jb, k, l;
11356497c311SBarry Smith   PetscCount      nz, hnz;
1136b51a4376SLisandro Dalcin   PetscInt       *rowlens, *colidxs;
1137b51a4376SLisandro Dalcin   PetscScalar    *matvals;
113817a3732bSBarry Smith   PetscMPIInt     rank;
1139660746e0SBarry Smith 
1140660746e0SBarry Smith   PetscFunctionBegin;
11419566063dSJacob Faibussowitsch   PetscCall(PetscViewerSetUp(viewer));
1142b51a4376SLisandro Dalcin 
1143b51a4376SLisandro Dalcin   M  = mat->rmap->N;
1144b51a4376SLisandro Dalcin   N  = mat->cmap->N;
1145b51a4376SLisandro Dalcin   m  = mat->rmap->n;
1146b51a4376SLisandro Dalcin   rs = mat->rmap->rstart;
1147b51a4376SLisandro Dalcin   cs = mat->cmap->rstart;
1148b51a4376SLisandro Dalcin   bs = mat->rmap->bs;
1149b51a4376SLisandro Dalcin   nz = bs * bs * (A->nz + B->nz);
1150b51a4376SLisandro Dalcin 
1151b51a4376SLisandro Dalcin   /* write matrix header */
1152660746e0SBarry Smith   header[0] = MAT_FILE_CLASSID;
11539371c9d4SSatish Balay   header[1] = M;
11549371c9d4SSatish Balay   header[2] = N;
11556497c311SBarry Smith   PetscCallMPI(MPI_Reduce(&nz, &hnz, 1, MPIU_COUNT, MPI_SUM, 0, PetscObjectComm((PetscObject)mat)));
115617a3732bSBarry Smith   PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)mat), &rank));
115717a3732bSBarry Smith   if (rank == 0) PetscCall(PetscIntCast(hnz, &header[3]));
11589566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryWrite(viewer, header, 4, PETSC_INT));
1159660746e0SBarry Smith 
1160b51a4376SLisandro Dalcin   /* fill in and store row lengths */
11619566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(m, &rowlens));
1162b51a4376SLisandro Dalcin   for (cnt = 0, i = 0; i < A->mbs; i++)
11639371c9d4SSatish Balay     for (j = 0; j < bs; j++) rowlens[cnt++] = bs * (A->i[i + 1] - A->i[i] + B->i[i + 1] - B->i[i]);
11649566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryWriteAll(viewer, rowlens, m, rs, M, PETSC_INT));
11659566063dSJacob Faibussowitsch   PetscCall(PetscFree(rowlens));
1166660746e0SBarry Smith 
1167b51a4376SLisandro Dalcin   /* fill in and store column indices */
11689566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(nz, &colidxs));
1169b51a4376SLisandro Dalcin   for (cnt = 0, i = 0; i < A->mbs; i++) {
1170b51a4376SLisandro Dalcin     for (k = 0; k < bs; k++) {
1171b51a4376SLisandro Dalcin       for (jb = B->i[i]; jb < B->i[i + 1]; jb++) {
1172b51a4376SLisandro Dalcin         if (garray[B->j[jb]] > cs / bs) break;
11739371c9d4SSatish Balay         for (l = 0; l < bs; l++) colidxs[cnt++] = bs * garray[B->j[jb]] + l;
1174660746e0SBarry Smith       }
1175b51a4376SLisandro Dalcin       for (ja = A->i[i]; ja < A->i[i + 1]; ja++)
11769371c9d4SSatish Balay         for (l = 0; l < bs; l++) colidxs[cnt++] = bs * A->j[ja] + l + cs;
1177b51a4376SLisandro Dalcin       for (; jb < B->i[i + 1]; jb++)
11789371c9d4SSatish Balay         for (l = 0; l < bs; l++) colidxs[cnt++] = bs * garray[B->j[jb]] + l;
1179660746e0SBarry Smith     }
1180660746e0SBarry Smith   }
11816497c311SBarry Smith   PetscCheck(cnt == nz, PETSC_COMM_SELF, PETSC_ERR_LIB, "Internal PETSc error: cnt = %" PetscInt_FMT " nz = %" PetscCount_FMT, cnt, nz);
11829566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryWriteAll(viewer, colidxs, nz, PETSC_DECIDE, PETSC_DECIDE, PETSC_INT));
11839566063dSJacob Faibussowitsch   PetscCall(PetscFree(colidxs));
1184660746e0SBarry Smith 
1185b51a4376SLisandro Dalcin   /* fill in and store nonzero values */
11869566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(nz, &matvals));
1187b51a4376SLisandro Dalcin   for (cnt = 0, i = 0; i < A->mbs; i++) {
1188b51a4376SLisandro Dalcin     for (k = 0; k < bs; k++) {
1189b51a4376SLisandro Dalcin       for (jb = B->i[i]; jb < B->i[i + 1]; jb++) {
1190b51a4376SLisandro Dalcin         if (garray[B->j[jb]] > cs / bs) break;
11919371c9d4SSatish Balay         for (l = 0; l < bs; l++) matvals[cnt++] = B->a[bs * (bs * jb + l) + k];
1192660746e0SBarry Smith       }
1193b51a4376SLisandro Dalcin       for (ja = A->i[i]; ja < A->i[i + 1]; ja++)
11949371c9d4SSatish Balay         for (l = 0; l < bs; l++) matvals[cnt++] = A->a[bs * (bs * ja + l) + k];
1195b51a4376SLisandro Dalcin       for (; jb < B->i[i + 1]; jb++)
11969371c9d4SSatish Balay         for (l = 0; l < bs; l++) matvals[cnt++] = B->a[bs * (bs * jb + l) + k];
1197660746e0SBarry Smith     }
1198b51a4376SLisandro Dalcin   }
11999566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryWriteAll(viewer, matvals, nz, PETSC_DECIDE, PETSC_DECIDE, PETSC_SCALAR));
12009566063dSJacob Faibussowitsch   PetscCall(PetscFree(matvals));
1201660746e0SBarry Smith 
1202b51a4376SLisandro Dalcin   /* write block size option to the viewer's .info file */
12039566063dSJacob Faibussowitsch   PetscCall(MatView_Binary_BlockSizes(mat, viewer));
12043ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1205660746e0SBarry Smith }
1206660746e0SBarry Smith 
1207d71ae5a4SJacob Faibussowitsch PetscErrorCode MatView_MPIBAIJ(Mat mat, PetscViewer viewer)
1208d71ae5a4SJacob Faibussowitsch {
1209ace3abfcSBarry Smith   PetscBool iascii, isdraw, issocket, isbinary;
121057b952d6SSatish Balay 
1211d64ed03dSBarry Smith   PetscFunctionBegin;
12129566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &iascii));
12139566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERDRAW, &isdraw));
12149566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERSOCKET, &issocket));
12159566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary));
1216660746e0SBarry Smith   if (iascii || isdraw || issocket) {
12179566063dSJacob Faibussowitsch     PetscCall(MatView_MPIBAIJ_ASCIIorDraworSocket(mat, viewer));
12181baa6e33SBarry Smith   } else if (isbinary) PetscCall(MatView_MPIBAIJ_Binary(mat, viewer));
12193ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
122057b952d6SSatish Balay }
122157b952d6SSatish Balay 
122266976f2fSJacob Faibussowitsch static PetscErrorCode MatMult_MPIBAIJ(Mat A, Vec xx, Vec yy)
1223d71ae5a4SJacob Faibussowitsch {
1224cee3aa6bSSatish Balay   Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data;
1225b24ad042SBarry Smith   PetscInt     nt;
1226cee3aa6bSSatish Balay 
1227d64ed03dSBarry Smith   PetscFunctionBegin;
12289566063dSJacob Faibussowitsch   PetscCall(VecGetLocalSize(xx, &nt));
12295f80ce2aSJacob Faibussowitsch   PetscCheck(nt == A->cmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Incompatible partition of A and xx");
12309566063dSJacob Faibussowitsch   PetscCall(VecGetLocalSize(yy, &nt));
1231da81f932SPierre Jolivet   PetscCheck(nt == A->rmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Incompatible partition of A and yy");
12329566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(a->Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD));
12339566063dSJacob Faibussowitsch   PetscCall((*a->A->ops->mult)(a->A, xx, yy));
12349566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(a->Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD));
12359566063dSJacob Faibussowitsch   PetscCall((*a->B->ops->multadd)(a->B, a->lvec, yy, yy));
12363ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1237cee3aa6bSSatish Balay }
1238cee3aa6bSSatish Balay 
123966976f2fSJacob Faibussowitsch static PetscErrorCode MatMultAdd_MPIBAIJ(Mat A, Vec xx, Vec yy, Vec zz)
1240d71ae5a4SJacob Faibussowitsch {
1241cee3aa6bSSatish Balay   Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data;
1242d64ed03dSBarry Smith 
1243d64ed03dSBarry Smith   PetscFunctionBegin;
12449566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(a->Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD));
12459566063dSJacob Faibussowitsch   PetscCall((*a->A->ops->multadd)(a->A, xx, yy, zz));
12469566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(a->Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD));
12479566063dSJacob Faibussowitsch   PetscCall((*a->B->ops->multadd)(a->B, a->lvec, zz, zz));
12483ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1249cee3aa6bSSatish Balay }
1250cee3aa6bSSatish Balay 
125166976f2fSJacob Faibussowitsch static PetscErrorCode MatMultTranspose_MPIBAIJ(Mat A, Vec xx, Vec yy)
1252d71ae5a4SJacob Faibussowitsch {
1253cee3aa6bSSatish Balay   Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data;
1254cee3aa6bSSatish Balay 
1255d64ed03dSBarry Smith   PetscFunctionBegin;
1256cee3aa6bSSatish Balay   /* do nondiagonal part */
12579566063dSJacob Faibussowitsch   PetscCall((*a->B->ops->multtranspose)(a->B, xx, a->lvec));
1258cee3aa6bSSatish Balay   /* do local part */
12599566063dSJacob Faibussowitsch   PetscCall((*a->A->ops->multtranspose)(a->A, xx, yy));
1260e4a140f6SJunchao Zhang   /* add partial results together */
12619566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(a->Mvctx, a->lvec, yy, ADD_VALUES, SCATTER_REVERSE));
12629566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(a->Mvctx, a->lvec, yy, ADD_VALUES, SCATTER_REVERSE));
12633ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1264cee3aa6bSSatish Balay }
1265cee3aa6bSSatish Balay 
126666976f2fSJacob Faibussowitsch static PetscErrorCode MatMultTransposeAdd_MPIBAIJ(Mat A, Vec xx, Vec yy, Vec zz)
1267d71ae5a4SJacob Faibussowitsch {
1268cee3aa6bSSatish Balay   Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data;
1269cee3aa6bSSatish Balay 
1270d64ed03dSBarry Smith   PetscFunctionBegin;
1271cee3aa6bSSatish Balay   /* do nondiagonal part */
12729566063dSJacob Faibussowitsch   PetscCall((*a->B->ops->multtranspose)(a->B, xx, a->lvec));
1273cee3aa6bSSatish Balay   /* do local part */
12749566063dSJacob Faibussowitsch   PetscCall((*a->A->ops->multtransposeadd)(a->A, xx, yy, zz));
1275e4a140f6SJunchao Zhang   /* add partial results together */
12769566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(a->Mvctx, a->lvec, zz, ADD_VALUES, SCATTER_REVERSE));
12779566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(a->Mvctx, a->lvec, zz, ADD_VALUES, SCATTER_REVERSE));
12783ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1279cee3aa6bSSatish Balay }
1280cee3aa6bSSatish Balay 
1281cee3aa6bSSatish Balay /*
1282cee3aa6bSSatish Balay   This only works correctly for square matrices where the subblock A->A is the
1283cee3aa6bSSatish Balay    diagonal block
1284cee3aa6bSSatish Balay */
128566976f2fSJacob Faibussowitsch static PetscErrorCode MatGetDiagonal_MPIBAIJ(Mat A, Vec v)
1286d71ae5a4SJacob Faibussowitsch {
1287d64ed03dSBarry Smith   PetscFunctionBegin;
12885f80ce2aSJacob Faibussowitsch   PetscCheck(A->rmap->N == A->cmap->N, PETSC_COMM_SELF, PETSC_ERR_SUP, "Supports only square matrix where A->A is diag block");
12899566063dSJacob Faibussowitsch   PetscCall(MatGetDiagonal(((Mat_MPIBAIJ *)A->data)->A, v));
12903ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1291cee3aa6bSSatish Balay }
1292cee3aa6bSSatish Balay 
129366976f2fSJacob Faibussowitsch static PetscErrorCode MatScale_MPIBAIJ(Mat A, PetscScalar aa)
1294d71ae5a4SJacob Faibussowitsch {
1295cee3aa6bSSatish Balay   Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data;
1296d64ed03dSBarry Smith 
1297d64ed03dSBarry Smith   PetscFunctionBegin;
12989566063dSJacob Faibussowitsch   PetscCall(MatScale(a->A, aa));
12999566063dSJacob Faibussowitsch   PetscCall(MatScale(a->B, aa));
13003ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1301cee3aa6bSSatish Balay }
1302026e39d0SSatish Balay 
1303d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetRow_MPIBAIJ(Mat matin, PetscInt row, PetscInt *nz, PetscInt **idx, PetscScalar **v)
1304d71ae5a4SJacob Faibussowitsch {
1305acdf5bf4SSatish Balay   Mat_MPIBAIJ *mat = (Mat_MPIBAIJ *)matin->data;
130687828ca2SBarry Smith   PetscScalar *vworkA, *vworkB, **pvA, **pvB, *v_p;
1307d0f46423SBarry Smith   PetscInt     bs = matin->rmap->bs, bs2 = mat->bs2, i, *cworkA, *cworkB, **pcA, **pcB;
1308d0f46423SBarry Smith   PetscInt     nztot, nzA, nzB, lrow, brstart = matin->rmap->rstart, brend = matin->rmap->rend;
1309899cda47SBarry Smith   PetscInt    *cmap, *idx_p, cstart = mat->cstartbs;
1310acdf5bf4SSatish Balay 
1311d64ed03dSBarry Smith   PetscFunctionBegin;
13125f80ce2aSJacob Faibussowitsch   PetscCheck(row >= brstart && row < brend, PETSC_COMM_SELF, PETSC_ERR_SUP, "Only local rows");
13135f80ce2aSJacob Faibussowitsch   PetscCheck(!mat->getrowactive, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Already active");
1314acdf5bf4SSatish Balay   mat->getrowactive = PETSC_TRUE;
1315acdf5bf4SSatish Balay 
1316acdf5bf4SSatish Balay   if (!mat->rowvalues && (idx || v)) {
1317acdf5bf4SSatish Balay     /*
1318acdf5bf4SSatish Balay         allocate enough space to hold information from the longest row.
1319acdf5bf4SSatish Balay     */
1320acdf5bf4SSatish Balay     Mat_SeqBAIJ *Aa = (Mat_SeqBAIJ *)mat->A->data, *Ba = (Mat_SeqBAIJ *)mat->B->data;
1321b24ad042SBarry Smith     PetscInt     max = 1, mbs = mat->mbs, tmp;
1322bd16c2feSSatish Balay     for (i = 0; i < mbs; i++) {
1323acdf5bf4SSatish Balay       tmp = Aa->i[i + 1] - Aa->i[i] + Ba->i[i + 1] - Ba->i[i];
132426fbe8dcSKarl Rupp       if (max < tmp) max = tmp;
1325acdf5bf4SSatish Balay     }
13269566063dSJacob Faibussowitsch     PetscCall(PetscMalloc2(max * bs2, &mat->rowvalues, max * bs2, &mat->rowindices));
1327acdf5bf4SSatish Balay   }
1328d9d09a02SSatish Balay   lrow = row - brstart;
1329acdf5bf4SSatish Balay 
13309371c9d4SSatish Balay   pvA = &vworkA;
13319371c9d4SSatish Balay   pcA = &cworkA;
13329371c9d4SSatish Balay   pvB = &vworkB;
13339371c9d4SSatish Balay   pcB = &cworkB;
13349371c9d4SSatish Balay   if (!v) {
13359371c9d4SSatish Balay     pvA = NULL;
13369371c9d4SSatish Balay     pvB = NULL;
13379371c9d4SSatish Balay   }
13389371c9d4SSatish Balay   if (!idx) {
13399371c9d4SSatish Balay     pcA = NULL;
13409371c9d4SSatish Balay     if (!v) pcB = NULL;
13419371c9d4SSatish Balay   }
13429566063dSJacob Faibussowitsch   PetscCall((*mat->A->ops->getrow)(mat->A, lrow, &nzA, pcA, pvA));
13439566063dSJacob Faibussowitsch   PetscCall((*mat->B->ops->getrow)(mat->B, lrow, &nzB, pcB, pvB));
1344acdf5bf4SSatish Balay   nztot = nzA + nzB;
1345acdf5bf4SSatish Balay 
1346acdf5bf4SSatish Balay   cmap = mat->garray;
1347acdf5bf4SSatish Balay   if (v || idx) {
1348acdf5bf4SSatish Balay     if (nztot) {
1349acdf5bf4SSatish Balay       /* Sort by increasing column numbers, assuming A and B already sorted */
1350b24ad042SBarry Smith       PetscInt imark = -1;
1351acdf5bf4SSatish Balay       if (v) {
1352acdf5bf4SSatish Balay         *v = v_p = mat->rowvalues;
1353acdf5bf4SSatish Balay         for (i = 0; i < nzB; i++) {
1354d9d09a02SSatish Balay           if (cmap[cworkB[i] / bs] < cstart) v_p[i] = vworkB[i];
1355acdf5bf4SSatish Balay           else break;
1356acdf5bf4SSatish Balay         }
1357acdf5bf4SSatish Balay         imark = i;
1358acdf5bf4SSatish Balay         for (i = 0; i < nzA; i++) v_p[imark + i] = vworkA[i];
1359acdf5bf4SSatish Balay         for (i = imark; i < nzB; i++) v_p[nzA + i] = vworkB[i];
1360acdf5bf4SSatish Balay       }
1361acdf5bf4SSatish Balay       if (idx) {
1362acdf5bf4SSatish Balay         *idx = idx_p = mat->rowindices;
1363acdf5bf4SSatish Balay         if (imark > -1) {
1364ad540459SPierre Jolivet           for (i = 0; i < imark; i++) idx_p[i] = cmap[cworkB[i] / bs] * bs + cworkB[i] % bs;
1365acdf5bf4SSatish Balay         } else {
1366acdf5bf4SSatish Balay           for (i = 0; i < nzB; i++) {
136726fbe8dcSKarl Rupp             if (cmap[cworkB[i] / bs] < cstart) idx_p[i] = cmap[cworkB[i] / bs] * bs + cworkB[i] % bs;
1368acdf5bf4SSatish Balay             else break;
1369acdf5bf4SSatish Balay           }
1370acdf5bf4SSatish Balay           imark = i;
1371acdf5bf4SSatish Balay         }
1372d9d09a02SSatish Balay         for (i = 0; i < nzA; i++) idx_p[imark + i] = cstart * bs + cworkA[i];
1373d9d09a02SSatish Balay         for (i = imark; i < nzB; i++) idx_p[nzA + i] = cmap[cworkB[i] / bs] * bs + cworkB[i] % bs;
1374acdf5bf4SSatish Balay       }
1375d64ed03dSBarry Smith     } else {
1376f4259b30SLisandro Dalcin       if (idx) *idx = NULL;
1377f4259b30SLisandro Dalcin       if (v) *v = NULL;
1378d212a18eSSatish Balay     }
1379acdf5bf4SSatish Balay   }
1380acdf5bf4SSatish Balay   *nz = nztot;
13819566063dSJacob Faibussowitsch   PetscCall((*mat->A->ops->restorerow)(mat->A, lrow, &nzA, pcA, pvA));
13829566063dSJacob Faibussowitsch   PetscCall((*mat->B->ops->restorerow)(mat->B, lrow, &nzB, pcB, pvB));
13833ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1384acdf5bf4SSatish Balay }
1385acdf5bf4SSatish Balay 
1386d71ae5a4SJacob Faibussowitsch PetscErrorCode MatRestoreRow_MPIBAIJ(Mat mat, PetscInt row, PetscInt *nz, PetscInt **idx, PetscScalar **v)
1387d71ae5a4SJacob Faibussowitsch {
1388acdf5bf4SSatish Balay   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data;
1389d64ed03dSBarry Smith 
1390d64ed03dSBarry Smith   PetscFunctionBegin;
13915f80ce2aSJacob Faibussowitsch   PetscCheck(baij->getrowactive, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "MatGetRow not called");
1392acdf5bf4SSatish Balay   baij->getrowactive = PETSC_FALSE;
13933ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1394acdf5bf4SSatish Balay }
1395acdf5bf4SSatish Balay 
139666976f2fSJacob Faibussowitsch static PetscErrorCode MatZeroEntries_MPIBAIJ(Mat A)
1397d71ae5a4SJacob Faibussowitsch {
139858667388SSatish Balay   Mat_MPIBAIJ *l = (Mat_MPIBAIJ *)A->data;
1399d64ed03dSBarry Smith 
1400d64ed03dSBarry Smith   PetscFunctionBegin;
14019566063dSJacob Faibussowitsch   PetscCall(MatZeroEntries(l->A));
14029566063dSJacob Faibussowitsch   PetscCall(MatZeroEntries(l->B));
14033ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
140458667388SSatish Balay }
14050ac07820SSatish Balay 
140666976f2fSJacob Faibussowitsch static PetscErrorCode MatGetInfo_MPIBAIJ(Mat matin, MatInfoType flag, MatInfo *info)
1407d71ae5a4SJacob Faibussowitsch {
14084e220ebcSLois Curfman McInnes   Mat_MPIBAIJ   *a = (Mat_MPIBAIJ *)matin->data;
14094e220ebcSLois Curfman McInnes   Mat            A = a->A, B = a->B;
14103966268fSBarry Smith   PetscLogDouble isend[5], irecv[5];
14110ac07820SSatish Balay 
1412d64ed03dSBarry Smith   PetscFunctionBegin;
1413d0f46423SBarry Smith   info->block_size = (PetscReal)matin->rmap->bs;
141426fbe8dcSKarl Rupp 
14159566063dSJacob Faibussowitsch   PetscCall(MatGetInfo(A, MAT_LOCAL, info));
141626fbe8dcSKarl Rupp 
14179371c9d4SSatish Balay   isend[0] = info->nz_used;
14189371c9d4SSatish Balay   isend[1] = info->nz_allocated;
14199371c9d4SSatish Balay   isend[2] = info->nz_unneeded;
14209371c9d4SSatish Balay   isend[3] = info->memory;
14219371c9d4SSatish Balay   isend[4] = info->mallocs;
142226fbe8dcSKarl Rupp 
14239566063dSJacob Faibussowitsch   PetscCall(MatGetInfo(B, MAT_LOCAL, info));
142426fbe8dcSKarl Rupp 
14259371c9d4SSatish Balay   isend[0] += info->nz_used;
14269371c9d4SSatish Balay   isend[1] += info->nz_allocated;
14279371c9d4SSatish Balay   isend[2] += info->nz_unneeded;
14289371c9d4SSatish Balay   isend[3] += info->memory;
14299371c9d4SSatish Balay   isend[4] += info->mallocs;
143026fbe8dcSKarl Rupp 
14310ac07820SSatish Balay   if (flag == MAT_LOCAL) {
14324e220ebcSLois Curfman McInnes     info->nz_used      = isend[0];
14334e220ebcSLois Curfman McInnes     info->nz_allocated = isend[1];
14344e220ebcSLois Curfman McInnes     info->nz_unneeded  = isend[2];
14354e220ebcSLois Curfman McInnes     info->memory       = isend[3];
14364e220ebcSLois Curfman McInnes     info->mallocs      = isend[4];
14370ac07820SSatish Balay   } else if (flag == MAT_GLOBAL_MAX) {
1438462c564dSBarry Smith     PetscCallMPI(MPIU_Allreduce(isend, irecv, 5, MPIU_PETSCLOGDOUBLE, MPI_MAX, PetscObjectComm((PetscObject)matin)));
143926fbe8dcSKarl Rupp 
14404e220ebcSLois Curfman McInnes     info->nz_used      = irecv[0];
14414e220ebcSLois Curfman McInnes     info->nz_allocated = irecv[1];
14424e220ebcSLois Curfman McInnes     info->nz_unneeded  = irecv[2];
14434e220ebcSLois Curfman McInnes     info->memory       = irecv[3];
14444e220ebcSLois Curfman McInnes     info->mallocs      = irecv[4];
14450ac07820SSatish Balay   } else if (flag == MAT_GLOBAL_SUM) {
1446462c564dSBarry Smith     PetscCallMPI(MPIU_Allreduce(isend, irecv, 5, MPIU_PETSCLOGDOUBLE, MPI_SUM, PetscObjectComm((PetscObject)matin)));
144726fbe8dcSKarl Rupp 
14484e220ebcSLois Curfman McInnes     info->nz_used      = irecv[0];
14494e220ebcSLois Curfman McInnes     info->nz_allocated = irecv[1];
14504e220ebcSLois Curfman McInnes     info->nz_unneeded  = irecv[2];
14514e220ebcSLois Curfman McInnes     info->memory       = irecv[3];
14524e220ebcSLois Curfman McInnes     info->mallocs      = irecv[4];
145398921bdaSJacob Faibussowitsch   } else SETERRQ(PetscObjectComm((PetscObject)matin), PETSC_ERR_ARG_WRONG, "Unknown MatInfoType argument %d", (int)flag);
14544e220ebcSLois Curfman McInnes   info->fill_ratio_given  = 0; /* no parallel LU/ILU/Cholesky */
14554e220ebcSLois Curfman McInnes   info->fill_ratio_needed = 0;
14564e220ebcSLois Curfman McInnes   info->factor_mallocs    = 0;
14573ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
14580ac07820SSatish Balay }
14590ac07820SSatish Balay 
146066976f2fSJacob Faibussowitsch static PetscErrorCode MatSetOption_MPIBAIJ(Mat A, MatOption op, PetscBool flg)
1461d71ae5a4SJacob Faibussowitsch {
146258667388SSatish Balay   Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data;
146358667388SSatish Balay 
1464d64ed03dSBarry Smith   PetscFunctionBegin;
146512c028f9SKris Buschelman   switch (op) {
1466512a5fc5SBarry Smith   case MAT_NEW_NONZERO_LOCATIONS:
146712c028f9SKris Buschelman   case MAT_NEW_NONZERO_ALLOCATION_ERR:
146828b2fa4aSMatthew Knepley   case MAT_UNUSED_NONZERO_LOCATION_ERR:
1469a9817697SBarry Smith   case MAT_KEEP_NONZERO_PATTERN:
147012c028f9SKris Buschelman   case MAT_NEW_NONZERO_LOCATION_ERR:
147143674050SBarry Smith     MatCheckPreallocated(A, 1);
14729566063dSJacob Faibussowitsch     PetscCall(MatSetOption(a->A, op, flg));
14739566063dSJacob Faibussowitsch     PetscCall(MatSetOption(a->B, op, flg));
147412c028f9SKris Buschelman     break;
147512c028f9SKris Buschelman   case MAT_ROW_ORIENTED:
147643674050SBarry Smith     MatCheckPreallocated(A, 1);
14774e0d8c25SBarry Smith     a->roworiented = flg;
147826fbe8dcSKarl Rupp 
14799566063dSJacob Faibussowitsch     PetscCall(MatSetOption(a->A, op, flg));
14809566063dSJacob Faibussowitsch     PetscCall(MatSetOption(a->B, op, flg));
148112c028f9SKris Buschelman     break;
1482d71ae5a4SJacob Faibussowitsch   case MAT_IGNORE_OFF_PROC_ENTRIES:
1483d71ae5a4SJacob Faibussowitsch     a->donotstash = flg;
1484d71ae5a4SJacob Faibussowitsch     break;
148512c028f9SKris Buschelman   case MAT_USE_HASH_TABLE:
14864e0d8c25SBarry Smith     a->ht_flag = flg;
1487abf3b562SBarry Smith     a->ht_fact = 1.39;
148812c028f9SKris Buschelman     break;
148977e54ba9SKris Buschelman   case MAT_SYMMETRIC:
149077e54ba9SKris Buschelman   case MAT_STRUCTURALLY_SYMMETRIC:
14912188ac68SBarry Smith   case MAT_HERMITIAN:
14922188ac68SBarry Smith   case MAT_SYMMETRY_ETERNAL:
1493b94d7dedSBarry Smith   case MAT_STRUCTURAL_SYMMETRY_ETERNAL:
1494b94d7dedSBarry Smith   case MAT_SPD_ETERNAL:
1495b94d7dedSBarry Smith     /* if the diagonal matrix is square it inherits some of the properties above */
14969725ddffSPierre Jolivet     if (a->A && A->rmap->n == A->cmap->n) PetscCall(MatSetOption(a->A, op, flg));
149777e54ba9SKris Buschelman     break;
1498d71ae5a4SJacob Faibussowitsch   default:
1499*888c827cSStefano Zampini     break;
1500d64ed03dSBarry Smith   }
15013ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
150258667388SSatish Balay }
150358667388SSatish Balay 
150466976f2fSJacob Faibussowitsch static PetscErrorCode MatTranspose_MPIBAIJ(Mat A, MatReuse reuse, Mat *matout)
1505d71ae5a4SJacob Faibussowitsch {
15060ac07820SSatish Balay   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)A->data;
15070ac07820SSatish Balay   Mat_SeqBAIJ *Aloc;
15080ac07820SSatish Balay   Mat          B;
1509d0f46423SBarry Smith   PetscInt     M = A->rmap->N, N = A->cmap->N, *ai, *aj, i, *rvals, j, k, col;
1510d0f46423SBarry Smith   PetscInt     bs = A->rmap->bs, mbs = baij->mbs;
15113eda8832SBarry Smith   MatScalar   *a;
15120ac07820SSatish Balay 
1513d64ed03dSBarry Smith   PetscFunctionBegin;
15147fb60732SBarry Smith   if (reuse == MAT_REUSE_MATRIX) PetscCall(MatTransposeCheckNonzeroState_Private(A, *matout));
1515cf37664fSBarry Smith   if (reuse == MAT_INITIAL_MATRIX || reuse == MAT_INPLACE_MATRIX) {
15169566063dSJacob Faibussowitsch     PetscCall(MatCreate(PetscObjectComm((PetscObject)A), &B));
15179566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(B, A->cmap->n, A->rmap->n, N, M));
15189566063dSJacob Faibussowitsch     PetscCall(MatSetType(B, ((PetscObject)A)->type_name));
15192e72b8d9SBarry Smith     /* Do not know preallocation information, but must set block size */
15209566063dSJacob Faibussowitsch     PetscCall(MatMPIBAIJSetPreallocation(B, A->rmap->bs, PETSC_DECIDE, NULL, PETSC_DECIDE, NULL));
1521fc4dec0aSBarry Smith   } else {
1522fc4dec0aSBarry Smith     B = *matout;
1523fc4dec0aSBarry Smith   }
15240ac07820SSatish Balay 
15250ac07820SSatish Balay   /* copy over the A part */
15260ac07820SSatish Balay   Aloc = (Mat_SeqBAIJ *)baij->A->data;
15279371c9d4SSatish Balay   ai   = Aloc->i;
15289371c9d4SSatish Balay   aj   = Aloc->j;
15299371c9d4SSatish Balay   a    = Aloc->a;
15309566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(bs, &rvals));
15310ac07820SSatish Balay 
15320ac07820SSatish Balay   for (i = 0; i < mbs; i++) {
1533899cda47SBarry Smith     rvals[0] = bs * (baij->rstartbs + i);
153426fbe8dcSKarl Rupp     for (j = 1; j < bs; j++) rvals[j] = rvals[j - 1] + 1;
15350ac07820SSatish Balay     for (j = ai[i]; j < ai[i + 1]; j++) {
1536899cda47SBarry Smith       col = (baij->cstartbs + aj[j]) * bs;
15370ac07820SSatish Balay       for (k = 0; k < bs; k++) {
15389566063dSJacob Faibussowitsch         PetscCall(MatSetValues_MPIBAIJ(B, 1, &col, bs, rvals, a, INSERT_VALUES));
153926fbe8dcSKarl Rupp 
15409371c9d4SSatish Balay         col++;
15419371c9d4SSatish Balay         a += bs;
15420ac07820SSatish Balay       }
15430ac07820SSatish Balay     }
15440ac07820SSatish Balay   }
15450ac07820SSatish Balay   /* copy over the B part */
15460ac07820SSatish Balay   Aloc = (Mat_SeqBAIJ *)baij->B->data;
15479371c9d4SSatish Balay   ai   = Aloc->i;
15489371c9d4SSatish Balay   aj   = Aloc->j;
15499371c9d4SSatish Balay   a    = Aloc->a;
15500ac07820SSatish Balay   for (i = 0; i < mbs; i++) {
1551899cda47SBarry Smith     rvals[0] = bs * (baij->rstartbs + i);
155226fbe8dcSKarl Rupp     for (j = 1; j < bs; j++) rvals[j] = rvals[j - 1] + 1;
15530ac07820SSatish Balay     for (j = ai[i]; j < ai[i + 1]; j++) {
15540ac07820SSatish Balay       col = baij->garray[aj[j]] * bs;
15550ac07820SSatish Balay       for (k = 0; k < bs; k++) {
15569566063dSJacob Faibussowitsch         PetscCall(MatSetValues_MPIBAIJ(B, 1, &col, bs, rvals, a, INSERT_VALUES));
155726fbe8dcSKarl Rupp         col++;
155826fbe8dcSKarl Rupp         a += bs;
15590ac07820SSatish Balay       }
15600ac07820SSatish Balay     }
15610ac07820SSatish Balay   }
15629566063dSJacob Faibussowitsch   PetscCall(PetscFree(rvals));
15639566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY));
15649566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY));
15650ac07820SSatish Balay 
1566cf37664fSBarry Smith   if (reuse == MAT_INITIAL_MATRIX || reuse == MAT_REUSE_MATRIX) *matout = B;
156748a46eb9SPierre Jolivet   else PetscCall(MatHeaderMerge(A, &B));
15683ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
15690ac07820SSatish Balay }
15700e95ebc0SSatish Balay 
157166976f2fSJacob Faibussowitsch static PetscErrorCode MatDiagonalScale_MPIBAIJ(Mat mat, Vec ll, Vec rr)
1572d71ae5a4SJacob Faibussowitsch {
157336c4a09eSSatish Balay   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data;
157436c4a09eSSatish Balay   Mat          a = baij->A, b = baij->B;
1575b24ad042SBarry Smith   PetscInt     s1, s2, s3;
15760e95ebc0SSatish Balay 
1577d64ed03dSBarry Smith   PetscFunctionBegin;
15789566063dSJacob Faibussowitsch   PetscCall(MatGetLocalSize(mat, &s2, &s3));
157936c4a09eSSatish Balay   if (rr) {
15809566063dSJacob Faibussowitsch     PetscCall(VecGetLocalSize(rr, &s1));
15815f80ce2aSJacob Faibussowitsch     PetscCheck(s1 == s3, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "right vector non-conforming local size");
158236c4a09eSSatish Balay     /* Overlap communication with computation. */
15839566063dSJacob Faibussowitsch     PetscCall(VecScatterBegin(baij->Mvctx, rr, baij->lvec, INSERT_VALUES, SCATTER_FORWARD));
158436c4a09eSSatish Balay   }
15850e95ebc0SSatish Balay   if (ll) {
15869566063dSJacob Faibussowitsch     PetscCall(VecGetLocalSize(ll, &s1));
15875f80ce2aSJacob Faibussowitsch     PetscCheck(s1 == s2, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "left vector non-conforming local size");
1588dbbe0bcdSBarry Smith     PetscUseTypeMethod(b, diagonalscale, ll, NULL);
15890e95ebc0SSatish Balay   }
159036c4a09eSSatish Balay   /* scale  the diagonal block */
1591dbbe0bcdSBarry Smith   PetscUseTypeMethod(a, diagonalscale, ll, rr);
159236c4a09eSSatish Balay 
159336c4a09eSSatish Balay   if (rr) {
159436c4a09eSSatish Balay     /* Do a scatter end and then right scale the off-diagonal block */
15959566063dSJacob Faibussowitsch     PetscCall(VecScatterEnd(baij->Mvctx, rr, baij->lvec, INSERT_VALUES, SCATTER_FORWARD));
1596dbbe0bcdSBarry Smith     PetscUseTypeMethod(b, diagonalscale, NULL, baij->lvec);
159736c4a09eSSatish Balay   }
15983ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
15990e95ebc0SSatish Balay }
16000e95ebc0SSatish Balay 
160166976f2fSJacob Faibussowitsch static PetscErrorCode MatZeroRows_MPIBAIJ(Mat A, PetscInt N, const PetscInt rows[], PetscScalar diag, Vec x, Vec b)
1602d71ae5a4SJacob Faibussowitsch {
16030ac07820SSatish Balay   Mat_MPIBAIJ *l = (Mat_MPIBAIJ *)A->data;
160465a92638SMatthew G. Knepley   PetscInt    *lrows;
16056e520ac8SStefano Zampini   PetscInt     r, len;
160694342113SStefano Zampini   PetscBool    cong;
16070ac07820SSatish Balay 
1608d64ed03dSBarry Smith   PetscFunctionBegin;
16096e520ac8SStefano Zampini   /* get locally owned rows */
16109566063dSJacob Faibussowitsch   PetscCall(MatZeroRowsMapLocal_Private(A, N, rows, &len, &lrows));
1611dd8e379bSPierre Jolivet   /* fix right-hand side if needed */
161297b48c8fSBarry Smith   if (x && b) {
161365a92638SMatthew G. Knepley     const PetscScalar *xx;
161465a92638SMatthew G. Knepley     PetscScalar       *bb;
161565a92638SMatthew G. Knepley 
16169566063dSJacob Faibussowitsch     PetscCall(VecGetArrayRead(x, &xx));
16179566063dSJacob Faibussowitsch     PetscCall(VecGetArray(b, &bb));
161865a92638SMatthew G. Knepley     for (r = 0; r < len; ++r) bb[lrows[r]] = diag * xx[lrows[r]];
16199566063dSJacob Faibussowitsch     PetscCall(VecRestoreArrayRead(x, &xx));
16209566063dSJacob Faibussowitsch     PetscCall(VecRestoreArray(b, &bb));
162197b48c8fSBarry Smith   }
162297b48c8fSBarry Smith 
16230ac07820SSatish Balay   /* actually zap the local rows */
162472dacd9aSBarry Smith   /*
162572dacd9aSBarry Smith         Zero the required rows. If the "diagonal block" of the matrix
1626a8c7a070SBarry Smith      is square and the user wishes to set the diagonal we use separate
162772dacd9aSBarry Smith      code so that MatSetValues() is not called for each diagonal allocating
162872dacd9aSBarry Smith      new memory, thus calling lots of mallocs and slowing things down.
162972dacd9aSBarry Smith 
163072dacd9aSBarry Smith   */
16319c957beeSSatish Balay   /* must zero l->B before l->A because the (diag) case below may put values into l->B*/
16329566063dSJacob Faibussowitsch   PetscCall(MatZeroRows_SeqBAIJ(l->B, len, lrows, 0.0, NULL, NULL));
16339566063dSJacob Faibussowitsch   PetscCall(MatHasCongruentLayouts(A, &cong));
163494342113SStefano Zampini   if ((diag != 0.0) && cong) {
16359566063dSJacob Faibussowitsch     PetscCall(MatZeroRows_SeqBAIJ(l->A, len, lrows, diag, NULL, NULL));
1636f4df32b1SMatthew Knepley   } else if (diag != 0.0) {
16379566063dSJacob Faibussowitsch     PetscCall(MatZeroRows_SeqBAIJ(l->A, len, lrows, 0.0, NULL, NULL));
163800045ab3SPierre Jolivet     PetscCheck(!((Mat_SeqBAIJ *)l->A->data)->nonew, PETSC_COMM_SELF, PETSC_ERR_SUP, "MatZeroRows() on rectangular matrices cannot be used with the Mat options MAT_NEW_NONZERO_LOCATIONS, MAT_NEW_NONZERO_LOCATION_ERR, and MAT_NEW_NONZERO_ALLOCATION_ERR");
163965a92638SMatthew G. Knepley     for (r = 0; r < len; ++r) {
164065a92638SMatthew G. Knepley       const PetscInt row = lrows[r] + A->rmap->rstart;
16419566063dSJacob Faibussowitsch       PetscCall(MatSetValues(A, 1, &row, 1, &row, &diag, INSERT_VALUES));
1642a07cd24cSSatish Balay     }
16439566063dSJacob Faibussowitsch     PetscCall(MatAssemblyBegin(A, MAT_FINAL_ASSEMBLY));
16449566063dSJacob Faibussowitsch     PetscCall(MatAssemblyEnd(A, MAT_FINAL_ASSEMBLY));
16459c957beeSSatish Balay   } else {
16469566063dSJacob Faibussowitsch     PetscCall(MatZeroRows_SeqBAIJ(l->A, len, lrows, 0.0, NULL, NULL));
1647a07cd24cSSatish Balay   }
16489566063dSJacob Faibussowitsch   PetscCall(PetscFree(lrows));
16494f9cfa9eSBarry Smith 
16504f9cfa9eSBarry Smith   /* only change matrix nonzero state if pattern was allowed to be changed */
1651f4f49eeaSPierre Jolivet   if (!((Mat_SeqBAIJ *)l->A->data)->keepnonzeropattern || !((Mat_SeqBAIJ *)l->A->data)->nonew) {
1652e56f5c9eSBarry Smith     PetscObjectState state = l->A->nonzerostate + l->B->nonzerostate;
1653462c564dSBarry Smith     PetscCallMPI(MPIU_Allreduce(&state, &A->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)A)));
1654e56f5c9eSBarry Smith   }
16553ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
16560ac07820SSatish Balay }
165772dacd9aSBarry Smith 
165866976f2fSJacob Faibussowitsch static PetscErrorCode MatZeroRowsColumns_MPIBAIJ(Mat A, PetscInt N, const PetscInt rows[], PetscScalar diag, Vec x, Vec b)
1659d71ae5a4SJacob Faibussowitsch {
16606f0a72daSMatthew G. Knepley   Mat_MPIBAIJ       *l = (Mat_MPIBAIJ *)A->data;
16616497c311SBarry Smith   PetscMPIInt        n, p = 0;
1662131c27b5Sprj-   PetscInt           i, j, k, r, len = 0, row, col, count;
16636f0a72daSMatthew G. Knepley   PetscInt          *lrows, *owners = A->rmap->range;
16646f0a72daSMatthew G. Knepley   PetscSFNode       *rrows;
16656f0a72daSMatthew G. Knepley   PetscSF            sf;
16666f0a72daSMatthew G. Knepley   const PetscScalar *xx;
16676f0a72daSMatthew G. Knepley   PetscScalar       *bb, *mask;
16686f0a72daSMatthew G. Knepley   Vec                xmask, lmask;
16696f0a72daSMatthew G. Knepley   Mat_SeqBAIJ       *baij = (Mat_SeqBAIJ *)l->B->data;
16706f0a72daSMatthew G. Knepley   PetscInt           bs = A->rmap->bs, bs2 = baij->bs2;
16716f0a72daSMatthew G. Knepley   PetscScalar       *aa;
16726f0a72daSMatthew G. Knepley 
16736f0a72daSMatthew G. Knepley   PetscFunctionBegin;
16746497c311SBarry Smith   PetscCall(PetscMPIIntCast(A->rmap->n, &n));
16756f0a72daSMatthew G. Knepley   /* Create SF where leaves are input rows and roots are owned rows */
16769566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(n, &lrows));
16776f0a72daSMatthew G. Knepley   for (r = 0; r < n; ++r) lrows[r] = -1;
16789566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(N, &rrows));
16796f0a72daSMatthew G. Knepley   for (r = 0; r < N; ++r) {
16806f0a72daSMatthew G. Knepley     const PetscInt idx = rows[r];
16815f80ce2aSJacob Faibussowitsch     PetscCheck(idx >= 0 && A->rmap->N > idx, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row %" PetscInt_FMT " out of range [0,%" PetscInt_FMT ")", idx, A->rmap->N);
16825ba17502SJed Brown     if (idx < owners[p] || owners[p + 1] <= idx) { /* short-circuit the search if the last p owns this row too */
16839566063dSJacob Faibussowitsch       PetscCall(PetscLayoutFindOwner(A->rmap, idx, &p));
16845ba17502SJed Brown     }
16856f0a72daSMatthew G. Knepley     rrows[r].rank  = p;
16866f0a72daSMatthew G. Knepley     rrows[r].index = rows[r] - owners[p];
16876f0a72daSMatthew G. Knepley   }
16889566063dSJacob Faibussowitsch   PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)A), &sf));
16899566063dSJacob Faibussowitsch   PetscCall(PetscSFSetGraph(sf, n, N, NULL, PETSC_OWN_POINTER, rrows, PETSC_OWN_POINTER));
16906f0a72daSMatthew G. Knepley   /* Collect flags for rows to be zeroed */
16919566063dSJacob Faibussowitsch   PetscCall(PetscSFReduceBegin(sf, MPIU_INT, (PetscInt *)rows, lrows, MPI_LOR));
16929566063dSJacob Faibussowitsch   PetscCall(PetscSFReduceEnd(sf, MPIU_INT, (PetscInt *)rows, lrows, MPI_LOR));
16939566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&sf));
16946f0a72daSMatthew G. Knepley   /* Compress and put in row numbers */
16959371c9d4SSatish Balay   for (r = 0; r < n; ++r)
16969371c9d4SSatish Balay     if (lrows[r] >= 0) lrows[len++] = r;
16976f0a72daSMatthew G. Knepley   /* zero diagonal part of matrix */
16989566063dSJacob Faibussowitsch   PetscCall(MatZeroRowsColumns(l->A, len, lrows, diag, x, b));
16994cf0e950SBarry Smith   /* handle off-diagonal part of matrix */
17009566063dSJacob Faibussowitsch   PetscCall(MatCreateVecs(A, &xmask, NULL));
17019566063dSJacob Faibussowitsch   PetscCall(VecDuplicate(l->lvec, &lmask));
17029566063dSJacob Faibussowitsch   PetscCall(VecGetArray(xmask, &bb));
17036f0a72daSMatthew G. Knepley   for (i = 0; i < len; i++) bb[lrows[i]] = 1;
17049566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(xmask, &bb));
17059566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(l->Mvctx, xmask, lmask, ADD_VALUES, SCATTER_FORWARD));
17069566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(l->Mvctx, xmask, lmask, ADD_VALUES, SCATTER_FORWARD));
17079566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&xmask));
17086f0a72daSMatthew G. Knepley   if (x) {
17099566063dSJacob Faibussowitsch     PetscCall(VecScatterBegin(l->Mvctx, x, l->lvec, INSERT_VALUES, SCATTER_FORWARD));
17109566063dSJacob Faibussowitsch     PetscCall(VecScatterEnd(l->Mvctx, x, l->lvec, INSERT_VALUES, SCATTER_FORWARD));
17119566063dSJacob Faibussowitsch     PetscCall(VecGetArrayRead(l->lvec, &xx));
17129566063dSJacob Faibussowitsch     PetscCall(VecGetArray(b, &bb));
17136f0a72daSMatthew G. Knepley   }
17149566063dSJacob Faibussowitsch   PetscCall(VecGetArray(lmask, &mask));
17154cf0e950SBarry Smith   /* remove zeroed rows of off-diagonal matrix */
17166f0a72daSMatthew G. Knepley   for (i = 0; i < len; ++i) {
17176f0a72daSMatthew G. Knepley     row   = lrows[i];
17186f0a72daSMatthew G. Knepley     count = (baij->i[row / bs + 1] - baij->i[row / bs]) * bs;
1719835f2295SStefano Zampini     aa    = baij->a + baij->i[row / bs] * bs2 + (row % bs);
17206f0a72daSMatthew G. Knepley     for (k = 0; k < count; ++k) {
17216f0a72daSMatthew G. Knepley       aa[0] = 0.0;
17226f0a72daSMatthew G. Knepley       aa += bs;
17236f0a72daSMatthew G. Knepley     }
17246f0a72daSMatthew G. Knepley   }
17256f0a72daSMatthew G. Knepley   /* loop over all elements of off process part of matrix zeroing removed columns*/
17266f0a72daSMatthew G. Knepley   for (i = 0; i < l->B->rmap->N; ++i) {
17276f0a72daSMatthew G. Knepley     row = i / bs;
17286f0a72daSMatthew G. Knepley     for (j = baij->i[row]; j < baij->i[row + 1]; ++j) {
17296f0a72daSMatthew G. Knepley       for (k = 0; k < bs; ++k) {
17306f0a72daSMatthew G. Knepley         col = bs * baij->j[j] + k;
17316f0a72daSMatthew G. Knepley         if (PetscAbsScalar(mask[col])) {
1732835f2295SStefano Zampini           aa = baij->a + j * bs2 + (i % bs) + bs * k;
173389ae1891SBarry Smith           if (x) bb[i] -= aa[0] * xx[col];
17346f0a72daSMatthew G. Knepley           aa[0] = 0.0;
17356f0a72daSMatthew G. Knepley         }
17366f0a72daSMatthew G. Knepley       }
17376f0a72daSMatthew G. Knepley     }
17386f0a72daSMatthew G. Knepley   }
17396f0a72daSMatthew G. Knepley   if (x) {
17409566063dSJacob Faibussowitsch     PetscCall(VecRestoreArray(b, &bb));
17419566063dSJacob Faibussowitsch     PetscCall(VecRestoreArrayRead(l->lvec, &xx));
17426f0a72daSMatthew G. Knepley   }
17439566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(lmask, &mask));
17449566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&lmask));
17459566063dSJacob Faibussowitsch   PetscCall(PetscFree(lrows));
17464f9cfa9eSBarry Smith 
17474f9cfa9eSBarry Smith   /* only change matrix nonzero state if pattern was allowed to be changed */
1748f4f49eeaSPierre Jolivet   if (!((Mat_SeqBAIJ *)l->A->data)->nonew) {
17494f9cfa9eSBarry Smith     PetscObjectState state = l->A->nonzerostate + l->B->nonzerostate;
1750462c564dSBarry Smith     PetscCallMPI(MPIU_Allreduce(&state, &A->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)A)));
17514f9cfa9eSBarry Smith   }
17523ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
17536f0a72daSMatthew G. Knepley }
17546f0a72daSMatthew G. Knepley 
175566976f2fSJacob Faibussowitsch static PetscErrorCode MatSetUnfactored_MPIBAIJ(Mat A)
1756d71ae5a4SJacob Faibussowitsch {
1757bb5a7306SBarry Smith   Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data;
1758d64ed03dSBarry Smith 
1759d64ed03dSBarry Smith   PetscFunctionBegin;
17609566063dSJacob Faibussowitsch   PetscCall(MatSetUnfactored(a->A));
17613ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1762bb5a7306SBarry Smith }
1763bb5a7306SBarry Smith 
17646849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIBAIJ(Mat, MatDuplicateOption, Mat *);
17650ac07820SSatish Balay 
176666976f2fSJacob Faibussowitsch static PetscErrorCode MatEqual_MPIBAIJ(Mat A, Mat B, PetscBool *flag)
1767d71ae5a4SJacob Faibussowitsch {
17687fc3c18eSBarry Smith   Mat_MPIBAIJ *matB = (Mat_MPIBAIJ *)B->data, *matA = (Mat_MPIBAIJ *)A->data;
17697fc3c18eSBarry Smith   Mat          a, b, c, d;
1770ace3abfcSBarry Smith   PetscBool    flg;
17717fc3c18eSBarry Smith 
17727fc3c18eSBarry Smith   PetscFunctionBegin;
17739371c9d4SSatish Balay   a = matA->A;
17749371c9d4SSatish Balay   b = matA->B;
17759371c9d4SSatish Balay   c = matB->A;
17769371c9d4SSatish Balay   d = matB->B;
17777fc3c18eSBarry Smith 
17789566063dSJacob Faibussowitsch   PetscCall(MatEqual(a, c, &flg));
177948a46eb9SPierre Jolivet   if (flg) PetscCall(MatEqual(b, d, &flg));
1780462c564dSBarry Smith   PetscCallMPI(MPIU_Allreduce(&flg, flag, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)A)));
17813ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
17827fc3c18eSBarry Smith }
17837fc3c18eSBarry Smith 
178466976f2fSJacob Faibussowitsch static PetscErrorCode MatCopy_MPIBAIJ(Mat A, Mat B, MatStructure str)
1785d71ae5a4SJacob Faibussowitsch {
17863c896bc6SHong Zhang   Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data;
17873c896bc6SHong Zhang   Mat_MPIBAIJ *b = (Mat_MPIBAIJ *)B->data;
17883c896bc6SHong Zhang 
17893c896bc6SHong Zhang   PetscFunctionBegin;
17903c896bc6SHong Zhang   /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */
17913c896bc6SHong Zhang   if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) {
17929566063dSJacob Faibussowitsch     PetscCall(MatCopy_Basic(A, B, str));
17933c896bc6SHong Zhang   } else {
17949566063dSJacob Faibussowitsch     PetscCall(MatCopy(a->A, b->A, str));
17959566063dSJacob Faibussowitsch     PetscCall(MatCopy(a->B, b->B, str));
17963c896bc6SHong Zhang   }
17979566063dSJacob Faibussowitsch   PetscCall(PetscObjectStateIncrease((PetscObject)B));
17983ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
17993c896bc6SHong Zhang }
1800273d9f13SBarry Smith 
1801d71ae5a4SJacob Faibussowitsch PetscErrorCode MatAXPYGetPreallocation_MPIBAIJ(Mat Y, const PetscInt *yltog, Mat X, const PetscInt *xltog, PetscInt *nnz)
1802d71ae5a4SJacob Faibussowitsch {
1803001ddc4fSHong Zhang   PetscInt     bs = Y->rmap->bs, m = Y->rmap->N / bs;
18044de5dceeSHong Zhang   Mat_SeqBAIJ *x = (Mat_SeqBAIJ *)X->data;
18054de5dceeSHong Zhang   Mat_SeqBAIJ *y = (Mat_SeqBAIJ *)Y->data;
18064de5dceeSHong Zhang 
18074de5dceeSHong Zhang   PetscFunctionBegin;
18089566063dSJacob Faibussowitsch   PetscCall(MatAXPYGetPreallocation_MPIX_private(m, x->i, x->j, xltog, y->i, y->j, yltog, nnz));
18093ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
18104de5dceeSHong Zhang }
18114de5dceeSHong Zhang 
181266976f2fSJacob Faibussowitsch static PetscErrorCode MatAXPY_MPIBAIJ(Mat Y, PetscScalar a, Mat X, MatStructure str)
1813d71ae5a4SJacob Faibussowitsch {
18144fe895cdSHong Zhang   Mat_MPIBAIJ *xx = (Mat_MPIBAIJ *)X->data, *yy = (Mat_MPIBAIJ *)Y->data;
18154fe895cdSHong Zhang   PetscBLASInt bnz, one                         = 1;
18164fe895cdSHong Zhang   Mat_SeqBAIJ *x, *y;
1817b31f67cfSBarry Smith   PetscInt     bs2 = Y->rmap->bs * Y->rmap->bs;
18184fe895cdSHong Zhang 
18194fe895cdSHong Zhang   PetscFunctionBegin;
18204fe895cdSHong Zhang   if (str == SAME_NONZERO_PATTERN) {
18214fe895cdSHong Zhang     PetscScalar alpha = a;
18224fe895cdSHong Zhang     x                 = (Mat_SeqBAIJ *)xx->A->data;
18234fe895cdSHong Zhang     y                 = (Mat_SeqBAIJ *)yy->A->data;
18249566063dSJacob Faibussowitsch     PetscCall(PetscBLASIntCast(x->nz * bs2, &bnz));
1825792fecdfSBarry Smith     PetscCallBLAS("BLASaxpy", BLASaxpy_(&bnz, &alpha, x->a, &one, y->a, &one));
18264fe895cdSHong Zhang     x = (Mat_SeqBAIJ *)xx->B->data;
18274fe895cdSHong Zhang     y = (Mat_SeqBAIJ *)yy->B->data;
18289566063dSJacob Faibussowitsch     PetscCall(PetscBLASIntCast(x->nz * bs2, &bnz));
1829792fecdfSBarry Smith     PetscCallBLAS("BLASaxpy", BLASaxpy_(&bnz, &alpha, x->a, &one, y->a, &one));
18309566063dSJacob Faibussowitsch     PetscCall(PetscObjectStateIncrease((PetscObject)Y));
1831ab784542SHong Zhang   } else if (str == SUBSET_NONZERO_PATTERN) { /* nonzeros of X is a subset of Y's */
18329566063dSJacob Faibussowitsch     PetscCall(MatAXPY_Basic(Y, a, X, str));
18334fe895cdSHong Zhang   } else {
18344de5dceeSHong Zhang     Mat       B;
18354de5dceeSHong Zhang     PetscInt *nnz_d, *nnz_o, bs = Y->rmap->bs;
18369566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(yy->A->rmap->N, &nnz_d));
18379566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(yy->B->rmap->N, &nnz_o));
18389566063dSJacob Faibussowitsch     PetscCall(MatCreate(PetscObjectComm((PetscObject)Y), &B));
18399566063dSJacob Faibussowitsch     PetscCall(PetscObjectSetName((PetscObject)B, ((PetscObject)Y)->name));
18409566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(B, Y->rmap->n, Y->cmap->n, Y->rmap->N, Y->cmap->N));
18419566063dSJacob Faibussowitsch     PetscCall(MatSetBlockSizesFromMats(B, Y, Y));
18429566063dSJacob Faibussowitsch     PetscCall(MatSetType(B, MATMPIBAIJ));
18439566063dSJacob Faibussowitsch     PetscCall(MatAXPYGetPreallocation_SeqBAIJ(yy->A, xx->A, nnz_d));
18449566063dSJacob Faibussowitsch     PetscCall(MatAXPYGetPreallocation_MPIBAIJ(yy->B, yy->garray, xx->B, xx->garray, nnz_o));
18459566063dSJacob Faibussowitsch     PetscCall(MatMPIBAIJSetPreallocation(B, bs, 0, nnz_d, 0, nnz_o));
18464de5dceeSHong Zhang     /* MatAXPY_BasicWithPreallocation() for BAIJ matrix is much slower than AIJ, even for bs=1 ! */
18479566063dSJacob Faibussowitsch     PetscCall(MatAXPY_BasicWithPreallocation(B, Y, a, X, str));
18489566063dSJacob Faibussowitsch     PetscCall(MatHeaderMerge(Y, &B));
18499566063dSJacob Faibussowitsch     PetscCall(PetscFree(nnz_d));
18509566063dSJacob Faibussowitsch     PetscCall(PetscFree(nnz_o));
18514fe895cdSHong Zhang   }
18523ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
18534fe895cdSHong Zhang }
18544fe895cdSHong Zhang 
185566976f2fSJacob Faibussowitsch static PetscErrorCode MatConjugate_MPIBAIJ(Mat mat)
1856d71ae5a4SJacob Faibussowitsch {
18575f80ce2aSJacob Faibussowitsch   PetscFunctionBegin;
18585f80ce2aSJacob Faibussowitsch   if (PetscDefined(USE_COMPLEX)) {
18592726fb6dSPierre Jolivet     Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)mat->data;
18602726fb6dSPierre Jolivet 
18619566063dSJacob Faibussowitsch     PetscCall(MatConjugate_SeqBAIJ(a->A));
18629566063dSJacob Faibussowitsch     PetscCall(MatConjugate_SeqBAIJ(a->B));
18635f80ce2aSJacob Faibussowitsch   }
18643ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
18652726fb6dSPierre Jolivet }
18662726fb6dSPierre Jolivet 
186766976f2fSJacob Faibussowitsch static PetscErrorCode MatRealPart_MPIBAIJ(Mat A)
1868d71ae5a4SJacob Faibussowitsch {
186999cafbc1SBarry Smith   Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data;
187099cafbc1SBarry Smith 
187199cafbc1SBarry Smith   PetscFunctionBegin;
18729566063dSJacob Faibussowitsch   PetscCall(MatRealPart(a->A));
18739566063dSJacob Faibussowitsch   PetscCall(MatRealPart(a->B));
18743ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
187599cafbc1SBarry Smith }
187699cafbc1SBarry Smith 
187766976f2fSJacob Faibussowitsch static PetscErrorCode MatImaginaryPart_MPIBAIJ(Mat A)
1878d71ae5a4SJacob Faibussowitsch {
187999cafbc1SBarry Smith   Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data;
188099cafbc1SBarry Smith 
188199cafbc1SBarry Smith   PetscFunctionBegin;
18829566063dSJacob Faibussowitsch   PetscCall(MatImaginaryPart(a->A));
18839566063dSJacob Faibussowitsch   PetscCall(MatImaginaryPart(a->B));
18843ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
188599cafbc1SBarry Smith }
188699cafbc1SBarry Smith 
188766976f2fSJacob Faibussowitsch static PetscErrorCode MatCreateSubMatrix_MPIBAIJ(Mat mat, IS isrow, IS iscol, MatReuse call, Mat *newmat)
1888d71ae5a4SJacob Faibussowitsch {
18894aa3045dSJed Brown   IS       iscol_local;
18904aa3045dSJed Brown   PetscInt csize;
18914aa3045dSJed Brown 
18924aa3045dSJed Brown   PetscFunctionBegin;
18939566063dSJacob Faibussowitsch   PetscCall(ISGetLocalSize(iscol, &csize));
1894b79d0421SJed Brown   if (call == MAT_REUSE_MATRIX) {
18959566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)*newmat, "ISAllGather", (PetscObject *)&iscol_local));
18965f80ce2aSJacob Faibussowitsch     PetscCheck(iscol_local, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Submatrix passed in was not used before, cannot reuse");
1897b79d0421SJed Brown   } else {
18989566063dSJacob Faibussowitsch     PetscCall(ISAllGather(iscol, &iscol_local));
1899b79d0421SJed Brown   }
1900fdfbdca6SPierre Jolivet   PetscCall(MatCreateSubMatrix_MPIBAIJ_Private(mat, isrow, iscol_local, csize, call, newmat, PETSC_FALSE));
1901b79d0421SJed Brown   if (call == MAT_INITIAL_MATRIX) {
19029566063dSJacob Faibussowitsch     PetscCall(PetscObjectCompose((PetscObject)*newmat, "ISAllGather", (PetscObject)iscol_local));
19039566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&iscol_local));
1904b79d0421SJed Brown   }
19053ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
19064aa3045dSJed Brown }
190717df9f7cSHong Zhang 
190882094794SBarry Smith /*
190982094794SBarry Smith   Not great since it makes two copies of the submatrix, first an SeqBAIJ
191082094794SBarry Smith   in local and then by concatenating the local matrices the end result.
19117dae84e0SHong Zhang   Writing it directly would be much like MatCreateSubMatrices_MPIBAIJ().
19128f46ffcaSHong Zhang   This routine is used for BAIJ and SBAIJ matrices (unfortunate dependency).
191382094794SBarry Smith */
1914fdfbdca6SPierre Jolivet PetscErrorCode MatCreateSubMatrix_MPIBAIJ_Private(Mat mat, IS isrow, IS iscol, PetscInt csize, MatReuse call, Mat *newmat, PetscBool sym)
1915d71ae5a4SJacob Faibussowitsch {
191682094794SBarry Smith   PetscMPIInt  rank, size;
191782094794SBarry Smith   PetscInt     i, m, n, rstart, row, rend, nz, *cwork, j, bs;
1918c9ffca76SHong Zhang   PetscInt    *ii, *jj, nlocal, *dlens, *olens, dlen, olen, jend, mglobal;
191929dcf524SDmitry Karpeev   Mat          M, Mreuse;
192082094794SBarry Smith   MatScalar   *vwork, *aa;
1921ce94432eSBarry Smith   MPI_Comm     comm;
192229dcf524SDmitry Karpeev   IS           isrow_new, iscol_new;
192382094794SBarry Smith   Mat_SeqBAIJ *aij;
192482094794SBarry Smith 
192582094794SBarry Smith   PetscFunctionBegin;
19269566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)mat, &comm));
19279566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(comm, &rank));
19289566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
192929dcf524SDmitry Karpeev   /* The compression and expansion should be avoided. Doesn't point
193029dcf524SDmitry Karpeev      out errors, might change the indices, hence buggey */
19319566063dSJacob Faibussowitsch   PetscCall(ISCompressIndicesGeneral(mat->rmap->N, mat->rmap->n, mat->rmap->bs, 1, &isrow, &isrow_new));
1932864bd19bSPierre Jolivet   if (isrow == iscol) {
1933864bd19bSPierre Jolivet     iscol_new = isrow_new;
1934864bd19bSPierre Jolivet     PetscCall(PetscObjectReference((PetscObject)iscol_new));
1935864bd19bSPierre Jolivet   } else PetscCall(ISCompressIndicesGeneral(mat->cmap->N, mat->cmap->n, mat->cmap->bs, 1, &iscol, &iscol_new));
193682094794SBarry Smith 
193782094794SBarry Smith   if (call == MAT_REUSE_MATRIX) {
19389566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)*newmat, "SubMatrix", (PetscObject *)&Mreuse));
19395f80ce2aSJacob Faibussowitsch     PetscCheck(Mreuse, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Submatrix passed in was not used before, cannot reuse");
1940fdfbdca6SPierre Jolivet     PetscCall(MatCreateSubMatrices_MPIBAIJ_local(mat, 1, &isrow_new, &iscol_new, MAT_REUSE_MATRIX, &Mreuse, sym));
194182094794SBarry Smith   } else {
1942fdfbdca6SPierre Jolivet     PetscCall(MatCreateSubMatrices_MPIBAIJ_local(mat, 1, &isrow_new, &iscol_new, MAT_INITIAL_MATRIX, &Mreuse, sym));
194382094794SBarry Smith   }
19449566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&isrow_new));
19459566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&iscol_new));
194682094794SBarry Smith   /*
194782094794SBarry Smith       m - number of local rows
194882094794SBarry Smith       n - number of columns (same on all processors)
194982094794SBarry Smith       rstart - first row in new global matrix generated
195082094794SBarry Smith   */
19519566063dSJacob Faibussowitsch   PetscCall(MatGetBlockSize(mat, &bs));
19529566063dSJacob Faibussowitsch   PetscCall(MatGetSize(Mreuse, &m, &n));
195382094794SBarry Smith   m = m / bs;
195482094794SBarry Smith   n = n / bs;
195582094794SBarry Smith 
195682094794SBarry Smith   if (call == MAT_INITIAL_MATRIX) {
195757508eceSPierre Jolivet     aij = (Mat_SeqBAIJ *)Mreuse->data;
195882094794SBarry Smith     ii  = aij->i;
195982094794SBarry Smith     jj  = aij->j;
196082094794SBarry Smith 
196182094794SBarry Smith     /*
196282094794SBarry Smith         Determine the number of non-zeros in the diagonal and off-diagonal
196382094794SBarry Smith         portions of the matrix in order to do correct preallocation
196482094794SBarry Smith     */
196582094794SBarry Smith 
196682094794SBarry Smith     /* first get start and end of "diagonal" columns */
196782094794SBarry Smith     if (csize == PETSC_DECIDE) {
19689566063dSJacob Faibussowitsch       PetscCall(ISGetSize(isrow, &mglobal));
196982094794SBarry Smith       if (mglobal == n * bs) { /* square matrix */
197082094794SBarry Smith         nlocal = m;
197182094794SBarry Smith       } else {
197282094794SBarry Smith         nlocal = n / size + ((n % size) > rank);
197382094794SBarry Smith       }
197482094794SBarry Smith     } else {
197582094794SBarry Smith       nlocal = csize / bs;
197682094794SBarry Smith     }
19779566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Scan(&nlocal, &rend, 1, MPIU_INT, MPI_SUM, comm));
197882094794SBarry Smith     rstart = rend - nlocal;
1979aed4548fSBarry Smith     PetscCheck(rank != size - 1 || rend == n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Local column sizes %" PetscInt_FMT " do not add up to total number of columns %" PetscInt_FMT, rend, n);
198082094794SBarry Smith 
198182094794SBarry Smith     /* next, compute all the lengths */
19829566063dSJacob Faibussowitsch     PetscCall(PetscMalloc2(m + 1, &dlens, m + 1, &olens));
198382094794SBarry Smith     for (i = 0; i < m; i++) {
198482094794SBarry Smith       jend = ii[i + 1] - ii[i];
198582094794SBarry Smith       olen = 0;
198682094794SBarry Smith       dlen = 0;
198782094794SBarry Smith       for (j = 0; j < jend; j++) {
198882094794SBarry Smith         if (*jj < rstart || *jj >= rend) olen++;
198982094794SBarry Smith         else dlen++;
199082094794SBarry Smith         jj++;
199182094794SBarry Smith       }
199282094794SBarry Smith       olens[i] = olen;
199382094794SBarry Smith       dlens[i] = dlen;
199482094794SBarry Smith     }
19959566063dSJacob Faibussowitsch     PetscCall(MatCreate(comm, &M));
19969566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(M, bs * m, bs * nlocal, PETSC_DECIDE, bs * n));
1997fdfbdca6SPierre Jolivet     PetscCall(MatSetType(M, sym ? ((PetscObject)mat)->type_name : MATMPIBAIJ));
19989566063dSJacob Faibussowitsch     PetscCall(MatMPIBAIJSetPreallocation(M, bs, 0, dlens, 0, olens));
19999566063dSJacob Faibussowitsch     PetscCall(MatMPISBAIJSetPreallocation(M, bs, 0, dlens, 0, olens));
20009566063dSJacob Faibussowitsch     PetscCall(PetscFree2(dlens, olens));
200182094794SBarry Smith   } else {
200282094794SBarry Smith     PetscInt ml, nl;
200382094794SBarry Smith 
200482094794SBarry Smith     M = *newmat;
20059566063dSJacob Faibussowitsch     PetscCall(MatGetLocalSize(M, &ml, &nl));
20065f80ce2aSJacob Faibussowitsch     PetscCheck(ml == m, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Previous matrix must be same size/layout as request");
20079566063dSJacob Faibussowitsch     PetscCall(MatZeroEntries(M));
200882094794SBarry Smith     /*
200982094794SBarry Smith          The next two lines are needed so we may call MatSetValues_MPIAIJ() below directly,
201082094794SBarry Smith        rather than the slower MatSetValues().
201182094794SBarry Smith     */
201282094794SBarry Smith     M->was_assembled = PETSC_TRUE;
201382094794SBarry Smith     M->assembled     = PETSC_FALSE;
201482094794SBarry Smith   }
20159566063dSJacob Faibussowitsch   PetscCall(MatSetOption(M, MAT_ROW_ORIENTED, PETSC_FALSE));
20169566063dSJacob Faibussowitsch   PetscCall(MatGetOwnershipRange(M, &rstart, &rend));
201757508eceSPierre Jolivet   aij = (Mat_SeqBAIJ *)Mreuse->data;
201882094794SBarry Smith   ii  = aij->i;
201982094794SBarry Smith   jj  = aij->j;
202082094794SBarry Smith   aa  = aij->a;
202182094794SBarry Smith   for (i = 0; i < m; i++) {
202282094794SBarry Smith     row   = rstart / bs + i;
202382094794SBarry Smith     nz    = ii[i + 1] - ii[i];
20249371c9d4SSatish Balay     cwork = jj;
20258e3a54c0SPierre Jolivet     jj    = PetscSafePointerPlusOffset(jj, nz);
20269371c9d4SSatish Balay     vwork = aa;
20278e3a54c0SPierre Jolivet     aa    = PetscSafePointerPlusOffset(aa, nz * bs * bs);
20289566063dSJacob Faibussowitsch     PetscCall(MatSetValuesBlocked_MPIBAIJ(M, 1, &row, nz, cwork, vwork, INSERT_VALUES));
202982094794SBarry Smith   }
203082094794SBarry Smith 
20319566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(M, MAT_FINAL_ASSEMBLY));
20329566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(M, MAT_FINAL_ASSEMBLY));
203382094794SBarry Smith   *newmat = M;
203482094794SBarry Smith 
203582094794SBarry Smith   /* save submatrix used in processor for next request */
203682094794SBarry Smith   if (call == MAT_INITIAL_MATRIX) {
20379566063dSJacob Faibussowitsch     PetscCall(PetscObjectCompose((PetscObject)M, "SubMatrix", (PetscObject)Mreuse));
20389566063dSJacob Faibussowitsch     PetscCall(PetscObjectDereference((PetscObject)Mreuse));
203982094794SBarry Smith   }
20403ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
204182094794SBarry Smith }
204282094794SBarry Smith 
204366976f2fSJacob Faibussowitsch static PetscErrorCode MatPermute_MPIBAIJ(Mat A, IS rowp, IS colp, Mat *B)
2044d71ae5a4SJacob Faibussowitsch {
204582094794SBarry Smith   MPI_Comm        comm, pcomm;
2046a0a83eb5SRémi Lacroix   PetscInt        clocal_size, nrows;
204782094794SBarry Smith   const PetscInt *rows;
2048dbf0e21dSBarry Smith   PetscMPIInt     size;
2049a0a83eb5SRémi Lacroix   IS              crowp, lcolp;
205082094794SBarry Smith 
205182094794SBarry Smith   PetscFunctionBegin;
20529566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)A, &comm));
205382094794SBarry Smith   /* make a collective version of 'rowp' */
20549566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)rowp, &pcomm));
205582094794SBarry Smith   if (pcomm == comm) {
205682094794SBarry Smith     crowp = rowp;
205782094794SBarry Smith   } else {
20589566063dSJacob Faibussowitsch     PetscCall(ISGetSize(rowp, &nrows));
20599566063dSJacob Faibussowitsch     PetscCall(ISGetIndices(rowp, &rows));
20609566063dSJacob Faibussowitsch     PetscCall(ISCreateGeneral(comm, nrows, rows, PETSC_COPY_VALUES, &crowp));
20619566063dSJacob Faibussowitsch     PetscCall(ISRestoreIndices(rowp, &rows));
206282094794SBarry Smith   }
20639566063dSJacob Faibussowitsch   PetscCall(ISSetPermutation(crowp));
2064a0a83eb5SRémi Lacroix   /* make a local version of 'colp' */
20659566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)colp, &pcomm));
20669566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(pcomm, &size));
2067dbf0e21dSBarry Smith   if (size == 1) {
206882094794SBarry Smith     lcolp = colp;
206982094794SBarry Smith   } else {
20709566063dSJacob Faibussowitsch     PetscCall(ISAllGather(colp, &lcolp));
207182094794SBarry Smith   }
20729566063dSJacob Faibussowitsch   PetscCall(ISSetPermutation(lcolp));
207375f6568bSJed Brown   /* now we just get the submatrix */
20749566063dSJacob Faibussowitsch   PetscCall(MatGetLocalSize(A, NULL, &clocal_size));
2075fdfbdca6SPierre Jolivet   PetscCall(MatCreateSubMatrix_MPIBAIJ_Private(A, crowp, lcolp, clocal_size, MAT_INITIAL_MATRIX, B, PETSC_FALSE));
2076a0a83eb5SRémi Lacroix   /* clean up */
207748a46eb9SPierre Jolivet   if (pcomm != comm) PetscCall(ISDestroy(&crowp));
207848a46eb9SPierre Jolivet   if (size > 1) PetscCall(ISDestroy(&lcolp));
20793ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
208082094794SBarry Smith }
208182094794SBarry Smith 
208266976f2fSJacob Faibussowitsch static PetscErrorCode MatGetGhosts_MPIBAIJ(Mat mat, PetscInt *nghosts, const PetscInt *ghosts[])
2083d71ae5a4SJacob Faibussowitsch {
20848c7482ecSBarry Smith   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data;
20858c7482ecSBarry Smith   Mat_SeqBAIJ *B    = (Mat_SeqBAIJ *)baij->B->data;
20868c7482ecSBarry Smith 
20878c7482ecSBarry Smith   PetscFunctionBegin;
208826fbe8dcSKarl Rupp   if (nghosts) *nghosts = B->nbs;
208926fbe8dcSKarl Rupp   if (ghosts) *ghosts = baij->garray;
20903ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
20918c7482ecSBarry Smith }
20928c7482ecSBarry Smith 
209366976f2fSJacob Faibussowitsch static PetscErrorCode MatGetSeqNonzeroStructure_MPIBAIJ(Mat A, Mat *newmat)
2094d71ae5a4SJacob Faibussowitsch {
2095f6d58c54SBarry Smith   Mat          B;
2096f6d58c54SBarry Smith   Mat_MPIBAIJ *a  = (Mat_MPIBAIJ *)A->data;
2097f6d58c54SBarry Smith   Mat_SeqBAIJ *ad = (Mat_SeqBAIJ *)a->A->data, *bd = (Mat_SeqBAIJ *)a->B->data;
2098f6d58c54SBarry Smith   Mat_SeqAIJ  *b;
2099f4259b30SLisandro Dalcin   PetscMPIInt  size, rank, *recvcounts = NULL, *displs = NULL;
2100f6d58c54SBarry Smith   PetscInt     sendcount, i, *rstarts = A->rmap->range, n, cnt, j, bs = A->rmap->bs;
2101f6d58c54SBarry Smith   PetscInt     m, *garray = a->garray, *lens, *jsendbuf, *a_jsendbuf, *b_jsendbuf;
2102f6d58c54SBarry Smith 
2103f6d58c54SBarry Smith   PetscFunctionBegin;
21049566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)A), &size));
21059566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)A), &rank));
2106f6d58c54SBarry Smith 
21072ef1f0ffSBarry Smith   /*   Tell every processor the number of nonzeros per row  */
21089566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(A->rmap->N / bs, &lens));
2109ad540459SPierre Jolivet   for (i = A->rmap->rstart / bs; i < A->rmap->rend / bs; i++) lens[i] = ad->i[i - A->rmap->rstart / bs + 1] - ad->i[i - A->rmap->rstart / bs] + bd->i[i - A->rmap->rstart / bs + 1] - bd->i[i - A->rmap->rstart / bs];
21109566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(2 * size, &recvcounts));
2111f6d58c54SBarry Smith   displs = recvcounts + size;
2112f6d58c54SBarry Smith   for (i = 0; i < size; i++) {
21136497c311SBarry Smith     PetscCall(PetscMPIIntCast(A->rmap->range[i + 1] / bs - A->rmap->range[i] / bs, &recvcounts[i]));
21146497c311SBarry Smith     PetscCall(PetscMPIIntCast(A->rmap->range[i] / bs, &displs[i]));
2115f6d58c54SBarry Smith   }
21169566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Allgatherv(MPI_IN_PLACE, 0, MPI_DATATYPE_NULL, lens, recvcounts, displs, MPIU_INT, PetscObjectComm((PetscObject)A)));
21172ef1f0ffSBarry Smith   /* Create the sequential matrix of the same type as the local block diagonal  */
21189566063dSJacob Faibussowitsch   PetscCall(MatCreate(PETSC_COMM_SELF, &B));
21199566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(B, A->rmap->N / bs, A->cmap->N / bs, PETSC_DETERMINE, PETSC_DETERMINE));
21209566063dSJacob Faibussowitsch   PetscCall(MatSetType(B, MATSEQAIJ));
21219566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJSetPreallocation(B, 0, lens));
2122f6d58c54SBarry Smith   b = (Mat_SeqAIJ *)B->data;
2123f6d58c54SBarry Smith 
21242ef1f0ffSBarry Smith   /*     Copy my part of matrix column indices over  */
2125f6d58c54SBarry Smith   sendcount  = ad->nz + bd->nz;
2126f6d58c54SBarry Smith   jsendbuf   = b->j + b->i[rstarts[rank] / bs];
2127f6d58c54SBarry Smith   a_jsendbuf = ad->j;
2128f6d58c54SBarry Smith   b_jsendbuf = bd->j;
2129f6d58c54SBarry Smith   n          = A->rmap->rend / bs - A->rmap->rstart / bs;
2130f6d58c54SBarry Smith   cnt        = 0;
2131f6d58c54SBarry Smith   for (i = 0; i < n; i++) {
2132f6d58c54SBarry Smith     /* put in lower diagonal portion */
2133f6d58c54SBarry Smith     m = bd->i[i + 1] - bd->i[i];
2134f6d58c54SBarry Smith     while (m > 0) {
2135f6d58c54SBarry Smith       /* is it above diagonal (in bd (compressed) numbering) */
2136f6d58c54SBarry Smith       if (garray[*b_jsendbuf] > A->rmap->rstart / bs + i) break;
2137f6d58c54SBarry Smith       jsendbuf[cnt++] = garray[*b_jsendbuf++];
2138f6d58c54SBarry Smith       m--;
2139f6d58c54SBarry Smith     }
2140f6d58c54SBarry Smith 
2141f6d58c54SBarry Smith     /* put in diagonal portion */
2142ad540459SPierre Jolivet     for (j = ad->i[i]; j < ad->i[i + 1]; j++) jsendbuf[cnt++] = A->rmap->rstart / bs + *a_jsendbuf++;
2143f6d58c54SBarry Smith 
2144f6d58c54SBarry Smith     /* put in upper diagonal portion */
2145ad540459SPierre Jolivet     while (m-- > 0) jsendbuf[cnt++] = garray[*b_jsendbuf++];
2146f6d58c54SBarry Smith   }
21475f80ce2aSJacob Faibussowitsch   PetscCheck(cnt == sendcount, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Corrupted PETSc matrix: nz given %" PetscInt_FMT " actual nz %" PetscInt_FMT, sendcount, cnt);
2148f6d58c54SBarry Smith 
21492ef1f0ffSBarry Smith   /*  Gather all column indices to all processors  */
2150f6d58c54SBarry Smith   for (i = 0; i < size; i++) {
2151f6d58c54SBarry Smith     recvcounts[i] = 0;
2152ad540459SPierre Jolivet     for (j = A->rmap->range[i] / bs; j < A->rmap->range[i + 1] / bs; j++) recvcounts[i] += lens[j];
2153f6d58c54SBarry Smith   }
2154f6d58c54SBarry Smith   displs[0] = 0;
2155ad540459SPierre Jolivet   for (i = 1; i < size; i++) displs[i] = displs[i - 1] + recvcounts[i - 1];
21569566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Allgatherv(MPI_IN_PLACE, 0, MPI_DATATYPE_NULL, b->j, recvcounts, displs, MPIU_INT, PetscObjectComm((PetscObject)A)));
21575804573cSPierre Jolivet   /*  Assemble the matrix into usable form (note numerical values not yet set)  */
2158f6d58c54SBarry Smith   /* set the b->ilen (length of each row) values */
21599566063dSJacob Faibussowitsch   PetscCall(PetscArraycpy(b->ilen, lens, A->rmap->N / bs));
2160f6d58c54SBarry Smith   /* set the b->i indices */
2161f6d58c54SBarry Smith   b->i[0] = 0;
2162ad540459SPierre Jolivet   for (i = 1; i <= A->rmap->N / bs; i++) b->i[i] = b->i[i - 1] + lens[i - 1];
21639566063dSJacob Faibussowitsch   PetscCall(PetscFree(lens));
21649566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY));
21659566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY));
21669566063dSJacob Faibussowitsch   PetscCall(PetscFree(recvcounts));
2167f6d58c54SBarry Smith 
2168b94d7dedSBarry Smith   PetscCall(MatPropagateSymmetryOptions(A, B));
2169f6d58c54SBarry Smith   *newmat = B;
21703ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2171f6d58c54SBarry Smith }
2172f6d58c54SBarry Smith 
217366976f2fSJacob Faibussowitsch static PetscErrorCode MatSOR_MPIBAIJ(Mat matin, Vec bb, PetscReal omega, MatSORType flag, PetscReal fshift, PetscInt its, PetscInt lits, Vec xx)
2174d71ae5a4SJacob Faibussowitsch {
2175b1a666ecSBarry Smith   Mat_MPIBAIJ *mat = (Mat_MPIBAIJ *)matin->data;
2176f4259b30SLisandro Dalcin   Vec          bb1 = NULL;
2177b1a666ecSBarry Smith 
2178b1a666ecSBarry Smith   PetscFunctionBegin;
2179b1a666ecSBarry Smith   if (flag == SOR_APPLY_UPPER) {
21809566063dSJacob Faibussowitsch     PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx));
21813ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
2182b1a666ecSBarry Smith   }
2183b1a666ecSBarry Smith 
218448a46eb9SPierre Jolivet   if (its > 1 || ~flag & SOR_ZERO_INITIAL_GUESS) PetscCall(VecDuplicate(bb, &bb1));
21854e980039SJed Brown 
2186b1a666ecSBarry Smith   if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP) {
2187b1a666ecSBarry Smith     if (flag & SOR_ZERO_INITIAL_GUESS) {
21889566063dSJacob Faibussowitsch       PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx));
2189b1a666ecSBarry Smith       its--;
2190b1a666ecSBarry Smith     }
2191b1a666ecSBarry Smith 
2192b1a666ecSBarry Smith     while (its--) {
21939566063dSJacob Faibussowitsch       PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD));
21949566063dSJacob Faibussowitsch       PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD));
2195b1a666ecSBarry Smith 
2196b1a666ecSBarry Smith       /* update rhs: bb1 = bb - B*x */
21979566063dSJacob Faibussowitsch       PetscCall(VecScale(mat->lvec, -1.0));
21989566063dSJacob Faibussowitsch       PetscCall((*mat->B->ops->multadd)(mat->B, mat->lvec, bb, bb1));
2199b1a666ecSBarry Smith 
2200b1a666ecSBarry Smith       /* local sweep */
22019566063dSJacob Faibussowitsch       PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, SOR_SYMMETRIC_SWEEP, fshift, lits, 1, xx));
2202b1a666ecSBarry Smith     }
2203b1a666ecSBarry Smith   } else if (flag & SOR_LOCAL_FORWARD_SWEEP) {
2204b1a666ecSBarry Smith     if (flag & SOR_ZERO_INITIAL_GUESS) {
22059566063dSJacob Faibussowitsch       PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx));
2206b1a666ecSBarry Smith       its--;
2207b1a666ecSBarry Smith     }
2208b1a666ecSBarry Smith     while (its--) {
22099566063dSJacob Faibussowitsch       PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD));
22109566063dSJacob Faibussowitsch       PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD));
2211b1a666ecSBarry Smith 
2212b1a666ecSBarry Smith       /* update rhs: bb1 = bb - B*x */
22139566063dSJacob Faibussowitsch       PetscCall(VecScale(mat->lvec, -1.0));
22149566063dSJacob Faibussowitsch       PetscCall((*mat->B->ops->multadd)(mat->B, mat->lvec, bb, bb1));
2215b1a666ecSBarry Smith 
2216b1a666ecSBarry Smith       /* local sweep */
22179566063dSJacob Faibussowitsch       PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, SOR_FORWARD_SWEEP, fshift, lits, 1, xx));
2218b1a666ecSBarry Smith     }
2219b1a666ecSBarry Smith   } else if (flag & SOR_LOCAL_BACKWARD_SWEEP) {
2220b1a666ecSBarry Smith     if (flag & SOR_ZERO_INITIAL_GUESS) {
22219566063dSJacob Faibussowitsch       PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx));
2222b1a666ecSBarry Smith       its--;
2223b1a666ecSBarry Smith     }
2224b1a666ecSBarry Smith     while (its--) {
22259566063dSJacob Faibussowitsch       PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD));
22269566063dSJacob Faibussowitsch       PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD));
2227b1a666ecSBarry Smith 
2228b1a666ecSBarry Smith       /* update rhs: bb1 = bb - B*x */
22299566063dSJacob Faibussowitsch       PetscCall(VecScale(mat->lvec, -1.0));
22309566063dSJacob Faibussowitsch       PetscCall((*mat->B->ops->multadd)(mat->B, mat->lvec, bb, bb1));
2231b1a666ecSBarry Smith 
2232b1a666ecSBarry Smith       /* local sweep */
22339566063dSJacob Faibussowitsch       PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, SOR_BACKWARD_SWEEP, fshift, lits, 1, xx));
2234b1a666ecSBarry Smith     }
2235ce94432eSBarry Smith   } else SETERRQ(PetscObjectComm((PetscObject)matin), PETSC_ERR_SUP, "Parallel version of SOR requested not supported");
2236b1a666ecSBarry Smith 
22379566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&bb1));
22383ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2239b1a666ecSBarry Smith }
2240b1a666ecSBarry Smith 
224166976f2fSJacob Faibussowitsch static PetscErrorCode MatGetColumnReductions_MPIBAIJ(Mat A, PetscInt type, PetscReal *reductions)
2242d71ae5a4SJacob Faibussowitsch {
224347f7623dSRémi Lacroix   Mat_MPIBAIJ *aij = (Mat_MPIBAIJ *)A->data;
2244a873a8cdSSam Reynolds   PetscInt     m, N, i, *garray = aij->garray;
224547f7623dSRémi Lacroix   PetscInt     ib, jb, bs = A->rmap->bs;
224647f7623dSRémi Lacroix   Mat_SeqBAIJ *a_aij = (Mat_SeqBAIJ *)aij->A->data;
224747f7623dSRémi Lacroix   MatScalar   *a_val = a_aij->a;
224847f7623dSRémi Lacroix   Mat_SeqBAIJ *b_aij = (Mat_SeqBAIJ *)aij->B->data;
224947f7623dSRémi Lacroix   MatScalar   *b_val = b_aij->a;
225047f7623dSRémi Lacroix   PetscReal   *work;
225147f7623dSRémi Lacroix 
225247f7623dSRémi Lacroix   PetscFunctionBegin;
22539566063dSJacob Faibussowitsch   PetscCall(MatGetSize(A, &m, &N));
22549566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(N, &work));
2255857cbf51SRichard Tran Mills   if (type == NORM_2) {
225647f7623dSRémi Lacroix     for (i = a_aij->i[0]; i < a_aij->i[aij->A->rmap->n / bs]; i++) {
225747f7623dSRémi Lacroix       for (jb = 0; jb < bs; jb++) {
225847f7623dSRémi Lacroix         for (ib = 0; ib < bs; ib++) {
225947f7623dSRémi Lacroix           work[A->cmap->rstart + a_aij->j[i] * bs + jb] += PetscAbsScalar(*a_val * *a_val);
226047f7623dSRémi Lacroix           a_val++;
226147f7623dSRémi Lacroix         }
226247f7623dSRémi Lacroix       }
226347f7623dSRémi Lacroix     }
226447f7623dSRémi Lacroix     for (i = b_aij->i[0]; i < b_aij->i[aij->B->rmap->n / bs]; i++) {
226547f7623dSRémi Lacroix       for (jb = 0; jb < bs; jb++) {
226647f7623dSRémi Lacroix         for (ib = 0; ib < bs; ib++) {
226747f7623dSRémi Lacroix           work[garray[b_aij->j[i]] * bs + jb] += PetscAbsScalar(*b_val * *b_val);
226847f7623dSRémi Lacroix           b_val++;
226947f7623dSRémi Lacroix         }
227047f7623dSRémi Lacroix       }
227147f7623dSRémi Lacroix     }
2272857cbf51SRichard Tran Mills   } else if (type == NORM_1) {
227347f7623dSRémi Lacroix     for (i = a_aij->i[0]; i < a_aij->i[aij->A->rmap->n / bs]; i++) {
227447f7623dSRémi Lacroix       for (jb = 0; jb < bs; jb++) {
227547f7623dSRémi Lacroix         for (ib = 0; ib < bs; ib++) {
227647f7623dSRémi Lacroix           work[A->cmap->rstart + a_aij->j[i] * bs + jb] += PetscAbsScalar(*a_val);
227747f7623dSRémi Lacroix           a_val++;
227847f7623dSRémi Lacroix         }
227947f7623dSRémi Lacroix       }
228047f7623dSRémi Lacroix     }
228147f7623dSRémi Lacroix     for (i = b_aij->i[0]; i < b_aij->i[aij->B->rmap->n / bs]; i++) {
228247f7623dSRémi Lacroix       for (jb = 0; jb < bs; jb++) {
228347f7623dSRémi Lacroix         for (ib = 0; ib < bs; ib++) {
228447f7623dSRémi Lacroix           work[garray[b_aij->j[i]] * bs + jb] += PetscAbsScalar(*b_val);
228547f7623dSRémi Lacroix           b_val++;
228647f7623dSRémi Lacroix         }
228747f7623dSRémi Lacroix       }
228847f7623dSRémi Lacroix     }
2289857cbf51SRichard Tran Mills   } else if (type == NORM_INFINITY) {
229047f7623dSRémi Lacroix     for (i = a_aij->i[0]; i < a_aij->i[aij->A->rmap->n / bs]; i++) {
229147f7623dSRémi Lacroix       for (jb = 0; jb < bs; jb++) {
229247f7623dSRémi Lacroix         for (ib = 0; ib < bs; ib++) {
22936497c311SBarry Smith           PetscInt col = A->cmap->rstart + a_aij->j[i] * bs + jb;
229447f7623dSRémi Lacroix           work[col]    = PetscMax(PetscAbsScalar(*a_val), work[col]);
229547f7623dSRémi Lacroix           a_val++;
229647f7623dSRémi Lacroix         }
229747f7623dSRémi Lacroix       }
229847f7623dSRémi Lacroix     }
229947f7623dSRémi Lacroix     for (i = b_aij->i[0]; i < b_aij->i[aij->B->rmap->n / bs]; i++) {
230047f7623dSRémi Lacroix       for (jb = 0; jb < bs; jb++) {
230147f7623dSRémi Lacroix         for (ib = 0; ib < bs; ib++) {
23026497c311SBarry Smith           PetscInt col = garray[b_aij->j[i]] * bs + jb;
230347f7623dSRémi Lacroix           work[col]    = PetscMax(PetscAbsScalar(*b_val), work[col]);
230447f7623dSRémi Lacroix           b_val++;
230547f7623dSRémi Lacroix         }
230647f7623dSRémi Lacroix       }
230747f7623dSRémi Lacroix     }
2308857cbf51SRichard Tran Mills   } else if (type == REDUCTION_SUM_REALPART || type == REDUCTION_MEAN_REALPART) {
2309a873a8cdSSam Reynolds     for (i = a_aij->i[0]; i < a_aij->i[aij->A->rmap->n / bs]; i++) {
2310a873a8cdSSam Reynolds       for (jb = 0; jb < bs; jb++) {
2311a873a8cdSSam Reynolds         for (ib = 0; ib < bs; ib++) {
2312857cbf51SRichard Tran Mills           work[A->cmap->rstart + a_aij->j[i] * bs + jb] += PetscRealPart(*a_val);
2313a873a8cdSSam Reynolds           a_val++;
2314a873a8cdSSam Reynolds         }
2315a873a8cdSSam Reynolds       }
2316a873a8cdSSam Reynolds     }
2317a873a8cdSSam Reynolds     for (i = b_aij->i[0]; i < b_aij->i[aij->B->rmap->n / bs]; i++) {
2318a873a8cdSSam Reynolds       for (jb = 0; jb < bs; jb++) {
2319a873a8cdSSam Reynolds         for (ib = 0; ib < bs; ib++) {
2320857cbf51SRichard Tran Mills           work[garray[b_aij->j[i]] * bs + jb] += PetscRealPart(*b_val);
2321a873a8cdSSam Reynolds           b_val++;
2322a873a8cdSSam Reynolds         }
2323a873a8cdSSam Reynolds       }
2324a873a8cdSSam Reynolds     }
2325857cbf51SRichard Tran Mills   } else if (type == REDUCTION_SUM_IMAGINARYPART || type == REDUCTION_MEAN_IMAGINARYPART) {
2326857cbf51SRichard Tran Mills     for (i = a_aij->i[0]; i < a_aij->i[aij->A->rmap->n / bs]; i++) {
2327857cbf51SRichard Tran Mills       for (jb = 0; jb < bs; jb++) {
2328857cbf51SRichard Tran Mills         for (ib = 0; ib < bs; ib++) {
2329857cbf51SRichard Tran Mills           work[A->cmap->rstart + a_aij->j[i] * bs + jb] += PetscImaginaryPart(*a_val);
2330857cbf51SRichard Tran Mills           a_val++;
2331857cbf51SRichard Tran Mills         }
2332857cbf51SRichard Tran Mills       }
2333857cbf51SRichard Tran Mills     }
2334857cbf51SRichard Tran Mills     for (i = b_aij->i[0]; i < b_aij->i[aij->B->rmap->n / bs]; i++) {
2335857cbf51SRichard Tran Mills       for (jb = 0; jb < bs; jb++) {
2336857cbf51SRichard Tran Mills         for (ib = 0; ib < bs; ib++) {
2337857cbf51SRichard Tran Mills           work[garray[b_aij->j[i]] * bs + jb] += PetscImaginaryPart(*b_val);
2338857cbf51SRichard Tran Mills           b_val++;
2339857cbf51SRichard Tran Mills         }
2340857cbf51SRichard Tran Mills       }
2341857cbf51SRichard Tran Mills     }
2342857cbf51SRichard Tran Mills   } else SETERRQ(PetscObjectComm((PetscObject)A), PETSC_ERR_ARG_WRONG, "Unknown reduction type");
2343857cbf51SRichard Tran Mills   if (type == NORM_INFINITY) {
2344e91c04dfSPierre Jolivet     PetscCallMPI(MPIU_Allreduce(work, reductions, N, MPIU_REAL, MPIU_MAX, PetscObjectComm((PetscObject)A)));
234547f7623dSRémi Lacroix   } else {
2346e91c04dfSPierre Jolivet     PetscCallMPI(MPIU_Allreduce(work, reductions, N, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)A)));
234747f7623dSRémi Lacroix   }
23489566063dSJacob Faibussowitsch   PetscCall(PetscFree(work));
2349857cbf51SRichard Tran Mills   if (type == NORM_2) {
2350a873a8cdSSam Reynolds     for (i = 0; i < N; i++) reductions[i] = PetscSqrtReal(reductions[i]);
2351857cbf51SRichard Tran Mills   } else if (type == REDUCTION_MEAN_REALPART || type == REDUCTION_MEAN_IMAGINARYPART) {
2352a873a8cdSSam Reynolds     for (i = 0; i < N; i++) reductions[i] /= m;
235347f7623dSRémi Lacroix   }
23543ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
235547f7623dSRémi Lacroix }
235647f7623dSRémi Lacroix 
235766976f2fSJacob Faibussowitsch static PetscErrorCode MatInvertBlockDiagonal_MPIBAIJ(Mat A, const PetscScalar **values)
2358d71ae5a4SJacob Faibussowitsch {
2359bbead8a2SBarry Smith   Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data;
2360bbead8a2SBarry Smith 
2361bbead8a2SBarry Smith   PetscFunctionBegin;
23629566063dSJacob Faibussowitsch   PetscCall(MatInvertBlockDiagonal(a->A, values));
23637b6c816cSBarry Smith   A->factorerrortype             = a->A->factorerrortype;
23647b6c816cSBarry Smith   A->factorerror_zeropivot_value = a->A->factorerror_zeropivot_value;
23657b6c816cSBarry Smith   A->factorerror_zeropivot_row   = a->A->factorerror_zeropivot_row;
23663ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2367bbead8a2SBarry Smith }
2368bbead8a2SBarry Smith 
236966976f2fSJacob Faibussowitsch static PetscErrorCode MatShift_MPIBAIJ(Mat Y, PetscScalar a)
2370d71ae5a4SJacob Faibussowitsch {
23717d68702bSBarry Smith   Mat_MPIBAIJ *maij = (Mat_MPIBAIJ *)Y->data;
23726f33a894SBarry Smith   Mat_SeqBAIJ *aij  = (Mat_SeqBAIJ *)maij->A->data;
23737d68702bSBarry Smith 
23747d68702bSBarry Smith   PetscFunctionBegin;
23756f33a894SBarry Smith   if (!Y->preallocated) {
23769566063dSJacob Faibussowitsch     PetscCall(MatMPIBAIJSetPreallocation(Y, Y->rmap->bs, 1, NULL, 0, NULL));
23776f33a894SBarry Smith   } else if (!aij->nz) {
2378b83222d8SBarry Smith     PetscInt nonew = aij->nonew;
23799566063dSJacob Faibussowitsch     PetscCall(MatSeqBAIJSetPreallocation(maij->A, Y->rmap->bs, 1, NULL));
2380b83222d8SBarry Smith     aij->nonew = nonew;
23817d68702bSBarry Smith   }
23829566063dSJacob Faibussowitsch   PetscCall(MatShift_Basic(Y, a));
23833ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
23847d68702bSBarry Smith }
23858c7482ecSBarry Smith 
238666976f2fSJacob Faibussowitsch static PetscErrorCode MatMissingDiagonal_MPIBAIJ(Mat A, PetscBool *missing, PetscInt *d)
2387d71ae5a4SJacob Faibussowitsch {
23883b49f96aSBarry Smith   Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data;
23893b49f96aSBarry Smith 
23903b49f96aSBarry Smith   PetscFunctionBegin;
23915f80ce2aSJacob Faibussowitsch   PetscCheck(A->rmap->n == A->cmap->n, PETSC_COMM_SELF, PETSC_ERR_SUP, "Only works for square matrices");
23929566063dSJacob Faibussowitsch   PetscCall(MatMissingDiagonal(a->A, missing, d));
23933b49f96aSBarry Smith   if (d) {
23943b49f96aSBarry Smith     PetscInt rstart;
23959566063dSJacob Faibussowitsch     PetscCall(MatGetOwnershipRange(A, &rstart, NULL));
23963b49f96aSBarry Smith     *d += rstart / A->rmap->bs;
23973b49f96aSBarry Smith   }
23983ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
23993b49f96aSBarry Smith }
24003b49f96aSBarry Smith 
240166976f2fSJacob Faibussowitsch static PetscErrorCode MatGetDiagonalBlock_MPIBAIJ(Mat A, Mat *a)
2402d71ae5a4SJacob Faibussowitsch {
2403a5b7ff6bSBarry Smith   PetscFunctionBegin;
2404a5b7ff6bSBarry Smith   *a = ((Mat_MPIBAIJ *)A->data)->A;
24053ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2406a5b7ff6bSBarry Smith }
2407a5b7ff6bSBarry Smith 
240817ea310bSPierre Jolivet static PetscErrorCode MatEliminateZeros_MPIBAIJ(Mat A, PetscBool keep)
240917ea310bSPierre Jolivet {
241017ea310bSPierre Jolivet   Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data;
241117ea310bSPierre Jolivet 
241217ea310bSPierre Jolivet   PetscFunctionBegin;
241317ea310bSPierre Jolivet   PetscCall(MatEliminateZeros_SeqBAIJ(a->A, keep));        // possibly keep zero diagonal coefficients
241417ea310bSPierre Jolivet   PetscCall(MatEliminateZeros_SeqBAIJ(a->B, PETSC_FALSE)); // never keep zero diagonal coefficients
241517ea310bSPierre Jolivet   PetscFunctionReturn(PETSC_SUCCESS);
241617ea310bSPierre Jolivet }
241717ea310bSPierre Jolivet 
24183964eb88SJed Brown static struct _MatOps MatOps_Values = {MatSetValues_MPIBAIJ,
2419cc2dc46cSBarry Smith                                        MatGetRow_MPIBAIJ,
2420cc2dc46cSBarry Smith                                        MatRestoreRow_MPIBAIJ,
2421cc2dc46cSBarry Smith                                        MatMult_MPIBAIJ,
242297304618SKris Buschelman                                        /* 4*/ MatMultAdd_MPIBAIJ,
24237c922b88SBarry Smith                                        MatMultTranspose_MPIBAIJ,
24247c922b88SBarry Smith                                        MatMultTransposeAdd_MPIBAIJ,
2425f4259b30SLisandro Dalcin                                        NULL,
2426f4259b30SLisandro Dalcin                                        NULL,
2427f4259b30SLisandro Dalcin                                        NULL,
2428f4259b30SLisandro Dalcin                                        /*10*/ NULL,
2429f4259b30SLisandro Dalcin                                        NULL,
2430f4259b30SLisandro Dalcin                                        NULL,
2431b1a666ecSBarry Smith                                        MatSOR_MPIBAIJ,
2432cc2dc46cSBarry Smith                                        MatTranspose_MPIBAIJ,
243397304618SKris Buschelman                                        /*15*/ MatGetInfo_MPIBAIJ,
24347fc3c18eSBarry Smith                                        MatEqual_MPIBAIJ,
2435cc2dc46cSBarry Smith                                        MatGetDiagonal_MPIBAIJ,
2436cc2dc46cSBarry Smith                                        MatDiagonalScale_MPIBAIJ,
2437cc2dc46cSBarry Smith                                        MatNorm_MPIBAIJ,
243897304618SKris Buschelman                                        /*20*/ MatAssemblyBegin_MPIBAIJ,
2439cc2dc46cSBarry Smith                                        MatAssemblyEnd_MPIBAIJ,
2440cc2dc46cSBarry Smith                                        MatSetOption_MPIBAIJ,
2441cc2dc46cSBarry Smith                                        MatZeroEntries_MPIBAIJ,
2442d519adbfSMatthew Knepley                                        /*24*/ MatZeroRows_MPIBAIJ,
2443f4259b30SLisandro Dalcin                                        NULL,
2444f4259b30SLisandro Dalcin                                        NULL,
2445f4259b30SLisandro Dalcin                                        NULL,
2446f4259b30SLisandro Dalcin                                        NULL,
244726cec326SBarry Smith                                        /*29*/ MatSetUp_MPI_Hash,
2448f4259b30SLisandro Dalcin                                        NULL,
2449f4259b30SLisandro Dalcin                                        NULL,
2450a5b7ff6bSBarry Smith                                        MatGetDiagonalBlock_MPIBAIJ,
2451f4259b30SLisandro Dalcin                                        NULL,
2452d519adbfSMatthew Knepley                                        /*34*/ MatDuplicate_MPIBAIJ,
2453f4259b30SLisandro Dalcin                                        NULL,
2454f4259b30SLisandro Dalcin                                        NULL,
2455f4259b30SLisandro Dalcin                                        NULL,
2456f4259b30SLisandro Dalcin                                        NULL,
2457d519adbfSMatthew Knepley                                        /*39*/ MatAXPY_MPIBAIJ,
24587dae84e0SHong Zhang                                        MatCreateSubMatrices_MPIBAIJ,
2459cc2dc46cSBarry Smith                                        MatIncreaseOverlap_MPIBAIJ,
2460cc2dc46cSBarry Smith                                        MatGetValues_MPIBAIJ,
24613c896bc6SHong Zhang                                        MatCopy_MPIBAIJ,
2462f4259b30SLisandro Dalcin                                        /*44*/ NULL,
2463cc2dc46cSBarry Smith                                        MatScale_MPIBAIJ,
24647d68702bSBarry Smith                                        MatShift_MPIBAIJ,
2465f4259b30SLisandro Dalcin                                        NULL,
24666f0a72daSMatthew G. Knepley                                        MatZeroRowsColumns_MPIBAIJ,
2467f4259b30SLisandro Dalcin                                        /*49*/ NULL,
2468f4259b30SLisandro Dalcin                                        NULL,
2469f4259b30SLisandro Dalcin                                        NULL,
2470f4259b30SLisandro Dalcin                                        NULL,
2471f4259b30SLisandro Dalcin                                        NULL,
247293dfae19SHong Zhang                                        /*54*/ MatFDColoringCreate_MPIXAIJ,
2473f4259b30SLisandro Dalcin                                        NULL,
2474cc2dc46cSBarry Smith                                        MatSetUnfactored_MPIBAIJ,
247582094794SBarry Smith                                        MatPermute_MPIBAIJ,
2476cc2dc46cSBarry Smith                                        MatSetValuesBlocked_MPIBAIJ,
24777dae84e0SHong Zhang                                        /*59*/ MatCreateSubMatrix_MPIBAIJ,
2478f14a1c24SBarry Smith                                        MatDestroy_MPIBAIJ,
2479f14a1c24SBarry Smith                                        MatView_MPIBAIJ,
2480f4259b30SLisandro Dalcin                                        NULL,
2481f4259b30SLisandro Dalcin                                        NULL,
2482f4259b30SLisandro Dalcin                                        /*64*/ NULL,
2483f4259b30SLisandro Dalcin                                        NULL,
2484f4259b30SLisandro Dalcin                                        NULL,
2485f4259b30SLisandro Dalcin                                        NULL,
2486f4259b30SLisandro Dalcin                                        NULL,
2487d519adbfSMatthew Knepley                                        /*69*/ MatGetRowMaxAbs_MPIBAIJ,
2488f4259b30SLisandro Dalcin                                        NULL,
2489f4259b30SLisandro Dalcin                                        NULL,
2490f4259b30SLisandro Dalcin                                        NULL,
2491f4259b30SLisandro Dalcin                                        NULL,
2492f4259b30SLisandro Dalcin                                        /*74*/ NULL,
2493f6d58c54SBarry Smith                                        MatFDColoringApply_BAIJ,
2494f4259b30SLisandro Dalcin                                        NULL,
2495f4259b30SLisandro Dalcin                                        NULL,
2496f4259b30SLisandro Dalcin                                        NULL,
2497f4259b30SLisandro Dalcin                                        /*79*/ NULL,
2498f4259b30SLisandro Dalcin                                        NULL,
2499f4259b30SLisandro Dalcin                                        NULL,
2500f4259b30SLisandro Dalcin                                        NULL,
25015bba2384SShri Abhyankar                                        MatLoad_MPIBAIJ,
2502f4259b30SLisandro Dalcin                                        /*84*/ NULL,
2503f4259b30SLisandro Dalcin                                        NULL,
2504f4259b30SLisandro Dalcin                                        NULL,
2505f4259b30SLisandro Dalcin                                        NULL,
2506f4259b30SLisandro Dalcin                                        NULL,
2507f4259b30SLisandro Dalcin                                        /*89*/ NULL,
2508f4259b30SLisandro Dalcin                                        NULL,
2509f4259b30SLisandro Dalcin                                        NULL,
2510f4259b30SLisandro Dalcin                                        NULL,
2511f4259b30SLisandro Dalcin                                        NULL,
2512f4259b30SLisandro Dalcin                                        /*94*/ NULL,
2513f4259b30SLisandro Dalcin                                        NULL,
2514f4259b30SLisandro Dalcin                                        NULL,
2515f4259b30SLisandro Dalcin                                        NULL,
2516f4259b30SLisandro Dalcin                                        NULL,
2517f4259b30SLisandro Dalcin                                        /*99*/ NULL,
2518f4259b30SLisandro Dalcin                                        NULL,
2519f4259b30SLisandro Dalcin                                        NULL,
25202726fb6dSPierre Jolivet                                        MatConjugate_MPIBAIJ,
2521f4259b30SLisandro Dalcin                                        NULL,
2522f4259b30SLisandro Dalcin                                        /*104*/ NULL,
252399cafbc1SBarry Smith                                        MatRealPart_MPIBAIJ,
25248c7482ecSBarry Smith                                        MatImaginaryPart_MPIBAIJ,
2525f4259b30SLisandro Dalcin                                        NULL,
2526f4259b30SLisandro Dalcin                                        NULL,
2527f4259b30SLisandro Dalcin                                        /*109*/ NULL,
2528f4259b30SLisandro Dalcin                                        NULL,
2529f4259b30SLisandro Dalcin                                        NULL,
2530f4259b30SLisandro Dalcin                                        NULL,
25313b49f96aSBarry Smith                                        MatMissingDiagonal_MPIBAIJ,
2532d1adec66SJed Brown                                        /*114*/ MatGetSeqNonzeroStructure_MPIBAIJ,
2533f4259b30SLisandro Dalcin                                        NULL,
25344683f7a4SShri Abhyankar                                        MatGetGhosts_MPIBAIJ,
2535f4259b30SLisandro Dalcin                                        NULL,
2536f4259b30SLisandro Dalcin                                        NULL,
2537f4259b30SLisandro Dalcin                                        /*119*/ NULL,
2538f4259b30SLisandro Dalcin                                        NULL,
2539f4259b30SLisandro Dalcin                                        NULL,
2540f4259b30SLisandro Dalcin                                        NULL,
2541e8271787SHong Zhang                                        MatGetMultiProcBlock_MPIBAIJ,
2542f4259b30SLisandro Dalcin                                        /*124*/ NULL,
2543a873a8cdSSam Reynolds                                        MatGetColumnReductions_MPIBAIJ,
25443964eb88SJed Brown                                        MatInvertBlockDiagonal_MPIBAIJ,
2545f4259b30SLisandro Dalcin                                        NULL,
2546f4259b30SLisandro Dalcin                                        NULL,
2547f4259b30SLisandro Dalcin                                        /*129*/ NULL,
2548f4259b30SLisandro Dalcin                                        NULL,
2549f4259b30SLisandro Dalcin                                        NULL,
2550f4259b30SLisandro Dalcin                                        NULL,
2551f4259b30SLisandro Dalcin                                        NULL,
2552f4259b30SLisandro Dalcin                                        /*134*/ NULL,
2553f4259b30SLisandro Dalcin                                        NULL,
2554f4259b30SLisandro Dalcin                                        NULL,
2555f4259b30SLisandro Dalcin                                        NULL,
2556f4259b30SLisandro Dalcin                                        NULL,
255746533700Sstefano_zampini                                        /*139*/ MatSetBlockSizes_Default,
2558f4259b30SLisandro Dalcin                                        NULL,
2559f4259b30SLisandro Dalcin                                        NULL,
2560bdf6f3fcSHong Zhang                                        MatFDColoringSetUp_MPIXAIJ,
2561f4259b30SLisandro Dalcin                                        NULL,
2562d70f29a3SPierre Jolivet                                        /*144*/ MatCreateMPIMatConcatenateSeqMat_MPIBAIJ,
2563d70f29a3SPierre Jolivet                                        NULL,
2564d70f29a3SPierre Jolivet                                        NULL,
256599a7f59eSMark Adams                                        NULL,
256699a7f59eSMark Adams                                        NULL,
25677fb60732SBarry Smith                                        NULL,
2568dec0b466SHong Zhang                                        /*150*/ NULL,
2569eede4a3fSMark Adams                                        MatEliminateZeros_MPIBAIJ,
25704cc2b5b5SPierre Jolivet                                        MatGetRowSumAbs_MPIBAIJ,
257142ce410bSJunchao Zhang                                        NULL,
257242ce410bSJunchao Zhang                                        NULL,
2573fe1fc275SAlexander                                        /*155*/ NULL,
2574fe1fc275SAlexander                                        MatCopyHashToXAIJ_MPI_Hash};
257579bdfe76SSatish Balay 
2576cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIBAIJ_MPISBAIJ(Mat, MatType, MatReuse, Mat *);
2577c9225affSStefano Zampini PETSC_INTERN PetscErrorCode MatConvert_XAIJ_IS(Mat, MatType, MatReuse, Mat *);
2578d94109b8SHong Zhang 
257966976f2fSJacob Faibussowitsch static PetscErrorCode MatMPIBAIJSetPreallocationCSR_MPIBAIJ(Mat B, PetscInt bs, const PetscInt ii[], const PetscInt jj[], const PetscScalar V[])
2580d71ae5a4SJacob Faibussowitsch {
2581b8d659d7SLisandro Dalcin   PetscInt        m, rstart, cstart, cend;
2582f4259b30SLisandro Dalcin   PetscInt        i, j, dlen, olen, nz, nz_max = 0, *d_nnz = NULL, *o_nnz = NULL;
2583f4259b30SLisandro Dalcin   const PetscInt *JJ          = NULL;
2584f4259b30SLisandro Dalcin   PetscScalar    *values      = NULL;
2585d47bf9aaSJed Brown   PetscBool       roworiented = ((Mat_MPIBAIJ *)B->data)->roworiented;
25863bd0feecSPierre Jolivet   PetscBool       nooffprocentries;
2587aac34f13SBarry Smith 
2588aac34f13SBarry Smith   PetscFunctionBegin;
25899566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetBlockSize(B->rmap, bs));
25909566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetBlockSize(B->cmap, bs));
25919566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(B->rmap));
25929566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(B->cmap));
25939566063dSJacob Faibussowitsch   PetscCall(PetscLayoutGetBlockSize(B->rmap, &bs));
2594d0f46423SBarry Smith   m      = B->rmap->n / bs;
2595d0f46423SBarry Smith   rstart = B->rmap->rstart / bs;
2596d0f46423SBarry Smith   cstart = B->cmap->rstart / bs;
2597d0f46423SBarry Smith   cend   = B->cmap->rend / bs;
2598b8d659d7SLisandro Dalcin 
25995f80ce2aSJacob Faibussowitsch   PetscCheck(!ii[0], PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "ii[0] must be 0 but it is %" PetscInt_FMT, ii[0]);
26009566063dSJacob Faibussowitsch   PetscCall(PetscMalloc2(m, &d_nnz, m, &o_nnz));
2601aac34f13SBarry Smith   for (i = 0; i < m; i++) {
2602cf12db73SBarry Smith     nz = ii[i + 1] - ii[i];
26035f80ce2aSJacob Faibussowitsch     PetscCheck(nz >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Local row %" PetscInt_FMT " has a negative number of columns %" PetscInt_FMT, i, nz);
2604b8d659d7SLisandro Dalcin     nz_max = PetscMax(nz_max, nz);
260537cd3c0dSBarry Smith     dlen   = 0;
260637cd3c0dSBarry Smith     olen   = 0;
2607cf12db73SBarry Smith     JJ     = jj + ii[i];
2608b8d659d7SLisandro Dalcin     for (j = 0; j < nz; j++) {
260937cd3c0dSBarry Smith       if (*JJ < cstart || *JJ >= cend) olen++;
261037cd3c0dSBarry Smith       else dlen++;
2611aac34f13SBarry Smith       JJ++;
2612aac34f13SBarry Smith     }
261337cd3c0dSBarry Smith     d_nnz[i] = dlen;
261437cd3c0dSBarry Smith     o_nnz[i] = olen;
2615aac34f13SBarry Smith   }
26169566063dSJacob Faibussowitsch   PetscCall(MatMPIBAIJSetPreallocation(B, bs, 0, d_nnz, 0, o_nnz));
26179566063dSJacob Faibussowitsch   PetscCall(PetscFree2(d_nnz, o_nnz));
2618aac34f13SBarry Smith 
2619b8d659d7SLisandro Dalcin   values = (PetscScalar *)V;
262048a46eb9SPierre Jolivet   if (!values) PetscCall(PetscCalloc1(bs * bs * nz_max, &values));
2621b8d659d7SLisandro Dalcin   for (i = 0; i < m; i++) {
2622b8d659d7SLisandro Dalcin     PetscInt        row   = i + rstart;
2623cf12db73SBarry Smith     PetscInt        ncols = ii[i + 1] - ii[i];
2624cf12db73SBarry Smith     const PetscInt *icols = jj + ii[i];
2625bb80cfbbSStefano Zampini     if (bs == 1 || !roworiented) { /* block ordering matches the non-nested layout of MatSetValues so we can insert entire rows */
2626cf12db73SBarry Smith       const PetscScalar *svals = values + (V ? (bs * bs * ii[i]) : 0);
26279566063dSJacob Faibussowitsch       PetscCall(MatSetValuesBlocked_MPIBAIJ(B, 1, &row, ncols, icols, svals, INSERT_VALUES));
26283adadaf3SJed Brown     } else { /* block ordering does not match so we can only insert one block at a time. */
26293adadaf3SJed Brown       PetscInt j;
26303adadaf3SJed Brown       for (j = 0; j < ncols; j++) {
26313adadaf3SJed Brown         const PetscScalar *svals = values + (V ? (bs * bs * (ii[i] + j)) : 0);
26329566063dSJacob Faibussowitsch         PetscCall(MatSetValuesBlocked_MPIBAIJ(B, 1, &row, 1, &icols[j], svals, INSERT_VALUES));
26333adadaf3SJed Brown       }
26343adadaf3SJed Brown     }
2635aac34f13SBarry Smith   }
2636aac34f13SBarry Smith 
26379566063dSJacob Faibussowitsch   if (!V) PetscCall(PetscFree(values));
26383bd0feecSPierre Jolivet   nooffprocentries    = B->nooffprocentries;
26393bd0feecSPierre Jolivet   B->nooffprocentries = PETSC_TRUE;
26409566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY));
26419566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY));
26423bd0feecSPierre Jolivet   B->nooffprocentries = nooffprocentries;
26433bd0feecSPierre Jolivet 
26449566063dSJacob Faibussowitsch   PetscCall(MatSetOption(B, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE));
26453ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2646aac34f13SBarry Smith }
2647aac34f13SBarry Smith 
2648aac34f13SBarry Smith /*@C
264911a5261eSBarry Smith   MatMPIBAIJSetPreallocationCSR - Creates a sparse parallel matrix in `MATBAIJ` format using the given nonzero structure and (optional) numerical values
2650aac34f13SBarry Smith 
2651d083f849SBarry Smith   Collective
2652aac34f13SBarry Smith 
2653aac34f13SBarry Smith   Input Parameters:
26541c4f3114SJed Brown + B  - the matrix
2655dfb205c3SBarry Smith . bs - the block size
265620f4b53cSBarry Smith . i  - the indices into `j` for the start of each local row (starts with zero)
2657aac34f13SBarry Smith . j  - the column indices for each local row (starts with zero) these must be sorted for each row
2658d8a51d2aSBarry Smith - v  - optional values in the matrix, use `NULL` if not provided
2659aac34f13SBarry Smith 
2660664954b6SBarry Smith   Level: advanced
2661aac34f13SBarry Smith 
266295452b02SPatrick Sanan   Notes:
2663d8a51d2aSBarry Smith   The `i`, `j`, and `v` arrays ARE copied by this routine into the internal format used by PETSc;
2664d8a51d2aSBarry Smith   thus you CANNOT change the matrix entries by changing the values of `v` after you have
2665d8a51d2aSBarry Smith   called this routine.
2666d8a51d2aSBarry Smith 
266711a5261eSBarry Smith   The order of the entries in values is specified by the `MatOption` `MAT_ROW_ORIENTED`.  For example, C programs
266811a5261eSBarry Smith   may want to use the default `MAT_ROW_ORIENTED` with value `PETSC_TRUE` and use an array v[nnz][bs][bs] where the second index is
26693adadaf3SJed Brown   over rows within a block and the last index is over columns within a block row.  Fortran programs will likely set
267011a5261eSBarry Smith   `MAT_ROW_ORIENTED` with value `PETSC_FALSE` and use a Fortran array v(bs,bs,nnz) in which the first index is over rows within a
26713adadaf3SJed Brown   block column and the second index is over columns within a block.
26723adadaf3SJed Brown 
2673664954b6SBarry Smith   Though this routine has Preallocation() in the name it also sets the exact nonzero locations of the matrix entries and usually the numerical values as well
2674664954b6SBarry Smith 
26757d2c085eSPierre Jolivet .seealso: `Mat`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIBAIJSetPreallocation()`, `MatCreateAIJ()`, `MATMPIAIJ`, `MatCreateMPIBAIJWithArrays()`, `MATMPIBAIJ`
2676aac34f13SBarry Smith @*/
2677d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIBAIJSetPreallocationCSR(Mat B, PetscInt bs, const PetscInt i[], const PetscInt j[], const PetscScalar v[])
2678d71ae5a4SJacob Faibussowitsch {
2679aac34f13SBarry Smith   PetscFunctionBegin;
26806ba663aaSJed Brown   PetscValidHeaderSpecific(B, MAT_CLASSID, 1);
26816ba663aaSJed Brown   PetscValidType(B, 1);
26826ba663aaSJed Brown   PetscValidLogicalCollectiveInt(B, bs, 2);
2683cac4c232SBarry Smith   PetscTryMethod(B, "MatMPIBAIJSetPreallocationCSR_C", (Mat, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[]), (B, bs, i, j, v));
26843ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2685aac34f13SBarry Smith }
2686aac34f13SBarry Smith 
2687d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIBAIJSetPreallocation_MPIBAIJ(Mat B, PetscInt bs, PetscInt d_nz, const PetscInt *d_nnz, PetscInt o_nz, const PetscInt *o_nnz)
2688d71ae5a4SJacob Faibussowitsch {
2689ad79cf63SBarry Smith   Mat_MPIBAIJ *b = (Mat_MPIBAIJ *)B->data;
2690535b19f3SBarry Smith   PetscInt     i;
26915d2a9ed1SStefano Zampini   PetscMPIInt  size;
2692a23d5eceSKris Buschelman 
2693a23d5eceSKris Buschelman   PetscFunctionBegin;
2694ad79cf63SBarry Smith   if (B->hash_active) {
2695aea10558SJacob Faibussowitsch     B->ops[0]      = b->cops;
2696ad79cf63SBarry Smith     B->hash_active = PETSC_FALSE;
2697ad79cf63SBarry Smith   }
2698ad79cf63SBarry Smith   if (!B->preallocated) PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)B), bs, &B->bstash));
26999566063dSJacob Faibussowitsch   PetscCall(MatSetBlockSize(B, PetscAbs(bs)));
27009566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(B->rmap));
27019566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(B->cmap));
27029566063dSJacob Faibussowitsch   PetscCall(PetscLayoutGetBlockSize(B->rmap, &bs));
2703899cda47SBarry Smith 
2704a23d5eceSKris Buschelman   if (d_nnz) {
2705ad540459SPierre Jolivet     for (i = 0; i < B->rmap->n / bs; i++) PetscCheck(d_nnz[i] >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "d_nnz cannot be less than -1: local row %" PetscInt_FMT " value %" PetscInt_FMT, i, d_nnz[i]);
2706a23d5eceSKris Buschelman   }
2707a23d5eceSKris Buschelman   if (o_nnz) {
2708ad540459SPierre Jolivet     for (i = 0; i < B->rmap->n / bs; i++) PetscCheck(o_nnz[i] >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "o_nnz cannot be less than -1: local row %" PetscInt_FMT " value %" PetscInt_FMT, i, o_nnz[i]);
2709a23d5eceSKris Buschelman   }
2710a23d5eceSKris Buschelman 
2711a23d5eceSKris Buschelman   b->bs2 = bs * bs;
2712d0f46423SBarry Smith   b->mbs = B->rmap->n / bs;
2713d0f46423SBarry Smith   b->nbs = B->cmap->n / bs;
2714d0f46423SBarry Smith   b->Mbs = B->rmap->N / bs;
2715d0f46423SBarry Smith   b->Nbs = B->cmap->N / bs;
2716a23d5eceSKris Buschelman 
2717ad540459SPierre Jolivet   for (i = 0; i <= b->size; i++) b->rangebs[i] = B->rmap->range[i] / bs;
2718d0f46423SBarry Smith   b->rstartbs = B->rmap->rstart / bs;
2719d0f46423SBarry Smith   b->rendbs   = B->rmap->rend / bs;
2720d0f46423SBarry Smith   b->cstartbs = B->cmap->rstart / bs;
2721d0f46423SBarry Smith   b->cendbs   = B->cmap->rend / bs;
2722a23d5eceSKris Buschelman 
2723cb7b82ddSBarry Smith #if defined(PETSC_USE_CTABLE)
2724eec179cfSJacob Faibussowitsch   PetscCall(PetscHMapIDestroy(&b->colmap));
2725cb7b82ddSBarry Smith #else
27269566063dSJacob Faibussowitsch   PetscCall(PetscFree(b->colmap));
2727cb7b82ddSBarry Smith #endif
27289566063dSJacob Faibussowitsch   PetscCall(PetscFree(b->garray));
27299566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&b->lvec));
27309566063dSJacob Faibussowitsch   PetscCall(VecScatterDestroy(&b->Mvctx));
2731cb7b82ddSBarry Smith 
27329566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)B), &size));
2733c508b908SBarry Smith 
2734c508b908SBarry Smith   MatSeqXAIJGetOptions_Private(b->B);
27359566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&b->B));
27369566063dSJacob Faibussowitsch   PetscCall(MatCreate(PETSC_COMM_SELF, &b->B));
27379566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(b->B, B->rmap->n, size > 1 ? B->cmap->N : 0, B->rmap->n, size > 1 ? B->cmap->N : 0));
27389566063dSJacob Faibussowitsch   PetscCall(MatSetType(b->B, MATSEQBAIJ));
2739c508b908SBarry Smith   MatSeqXAIJRestoreOptions_Private(b->B);
2740cb7b82ddSBarry Smith 
2741c508b908SBarry Smith   MatSeqXAIJGetOptions_Private(b->A);
2742ad79cf63SBarry Smith   PetscCall(MatDestroy(&b->A));
27439566063dSJacob Faibussowitsch   PetscCall(MatCreate(PETSC_COMM_SELF, &b->A));
27449566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(b->A, B->rmap->n, B->cmap->n, B->rmap->n, B->cmap->n));
27459566063dSJacob Faibussowitsch   PetscCall(MatSetType(b->A, MATSEQBAIJ));
2746c508b908SBarry Smith   MatSeqXAIJRestoreOptions_Private(b->A);
2747a23d5eceSKris Buschelman 
27489566063dSJacob Faibussowitsch   PetscCall(MatSeqBAIJSetPreallocation(b->A, bs, d_nz, d_nnz));
27499566063dSJacob Faibussowitsch   PetscCall(MatSeqBAIJSetPreallocation(b->B, bs, o_nz, o_nnz));
2750526dfc15SBarry Smith   B->preallocated  = PETSC_TRUE;
2751cb7b82ddSBarry Smith   B->was_assembled = PETSC_FALSE;
2752cb7b82ddSBarry Smith   B->assembled     = PETSC_FALSE;
27533ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2754a23d5eceSKris Buschelman }
2755a23d5eceSKris Buschelman 
27567087cfbeSBarry Smith extern PetscErrorCode MatDiagonalScaleLocal_MPIBAIJ(Mat, Vec);
27577087cfbeSBarry Smith extern PetscErrorCode MatSetHashTableFactor_MPIBAIJ(Mat, PetscReal);
27585bf65638SKris Buschelman 
2759d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode MatConvert_MPIBAIJ_MPIAdj(Mat B, MatType newtype, MatReuse reuse, Mat *adj)
2760d71ae5a4SJacob Faibussowitsch {
276182094794SBarry Smith   Mat_MPIBAIJ    *b = (Mat_MPIBAIJ *)B->data;
276282094794SBarry Smith   Mat_SeqBAIJ    *d = (Mat_SeqBAIJ *)b->A->data, *o = (Mat_SeqBAIJ *)b->B->data;
276382094794SBarry Smith   PetscInt        M = B->rmap->n / B->rmap->bs, i, *ii, *jj, cnt, j, k, rstart = B->rmap->rstart / B->rmap->bs;
276482094794SBarry Smith   const PetscInt *id = d->i, *jd = d->j, *io = o->i, *jo = o->j, *garray = b->garray;
276582094794SBarry Smith 
276682094794SBarry Smith   PetscFunctionBegin;
27679566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(M + 1, &ii));
276882094794SBarry Smith   ii[0] = 0;
276982094794SBarry Smith   for (i = 0; i < M; i++) {
277008401ef6SPierre Jolivet     PetscCheck((id[i + 1] - id[i]) >= 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Indices wrong %" PetscInt_FMT " %" PetscInt_FMT " %" PetscInt_FMT, i, id[i], id[i + 1]);
277108401ef6SPierre Jolivet     PetscCheck((io[i + 1] - io[i]) >= 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Indices wrong %" PetscInt_FMT " %" PetscInt_FMT " %" PetscInt_FMT, i, io[i], io[i + 1]);
277282094794SBarry Smith     ii[i + 1] = ii[i] + id[i + 1] - id[i] + io[i + 1] - io[i];
27735ee9ba1cSJed Brown     /* remove one from count of matrix has diagonal */
27745ee9ba1cSJed Brown     for (j = id[i]; j < id[i + 1]; j++) {
27759371c9d4SSatish Balay       if (jd[j] == i) {
27769371c9d4SSatish Balay         ii[i + 1]--;
27779371c9d4SSatish Balay         break;
27789371c9d4SSatish Balay       }
27795ee9ba1cSJed Brown     }
278082094794SBarry Smith   }
27819566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(ii[M], &jj));
278282094794SBarry Smith   cnt = 0;
278382094794SBarry Smith   for (i = 0; i < M; i++) {
278482094794SBarry Smith     for (j = io[i]; j < io[i + 1]; j++) {
278582094794SBarry Smith       if (garray[jo[j]] > rstart) break;
278682094794SBarry Smith       jj[cnt++] = garray[jo[j]];
278782094794SBarry Smith     }
278882094794SBarry Smith     for (k = id[i]; k < id[i + 1]; k++) {
2789ad540459SPierre Jolivet       if (jd[k] != i) jj[cnt++] = rstart + jd[k];
279082094794SBarry Smith     }
2791ad540459SPierre Jolivet     for (; j < io[i + 1]; j++) jj[cnt++] = garray[jo[j]];
279282094794SBarry Smith   }
27939566063dSJacob Faibussowitsch   PetscCall(MatCreateMPIAdj(PetscObjectComm((PetscObject)B), M, B->cmap->N / B->rmap->bs, ii, jj, NULL, adj));
27943ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
279582094794SBarry Smith }
279682094794SBarry Smith 
2797c6db04a5SJed Brown #include <../src/mat/impls/aij/mpi/mpiaij.h>
279862471d69SBarry Smith 
2799cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_SeqBAIJ_SeqAIJ(Mat, MatType, MatReuse, Mat *);
2800b2573a8aSBarry Smith 
2801d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode MatConvert_MPIBAIJ_MPIAIJ(Mat A, MatType newtype, MatReuse reuse, Mat *newmat)
2802d71ae5a4SJacob Faibussowitsch {
280362471d69SBarry Smith   Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data;
280485a69837SSatish Balay   Mat_MPIAIJ  *b;
28055f80ce2aSJacob Faibussowitsch   Mat          B;
280662471d69SBarry Smith 
280762471d69SBarry Smith   PetscFunctionBegin;
28085f80ce2aSJacob Faibussowitsch   PetscCheck(A->assembled, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Matrix must be assembled");
280962471d69SBarry Smith 
28100f6d62edSLisandro Dalcin   if (reuse == MAT_REUSE_MATRIX) {
28110f6d62edSLisandro Dalcin     B = *newmat;
28120f6d62edSLisandro Dalcin   } else {
28139566063dSJacob Faibussowitsch     PetscCall(MatCreate(PetscObjectComm((PetscObject)A), &B));
28149566063dSJacob Faibussowitsch     PetscCall(MatSetType(B, MATMPIAIJ));
28159566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(B, A->rmap->n, A->cmap->n, A->rmap->N, A->cmap->N));
28169566063dSJacob Faibussowitsch     PetscCall(MatSetBlockSizes(B, A->rmap->bs, A->cmap->bs));
28179566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJSetPreallocation(B, 0, NULL));
28189566063dSJacob Faibussowitsch     PetscCall(MatMPIAIJSetPreallocation(B, 0, NULL, 0, NULL));
28190f6d62edSLisandro Dalcin   }
282062471d69SBarry Smith   b = (Mat_MPIAIJ *)B->data;
282162471d69SBarry Smith 
28220f6d62edSLisandro Dalcin   if (reuse == MAT_REUSE_MATRIX) {
28239566063dSJacob Faibussowitsch     PetscCall(MatConvert_SeqBAIJ_SeqAIJ(a->A, MATSEQAIJ, MAT_REUSE_MATRIX, &b->A));
28249566063dSJacob Faibussowitsch     PetscCall(MatConvert_SeqBAIJ_SeqAIJ(a->B, MATSEQAIJ, MAT_REUSE_MATRIX, &b->B));
28250f6d62edSLisandro Dalcin   } else {
28267c612885SStefano Zampini     PetscInt   *garray = a->garray;
28277c612885SStefano Zampini     Mat_SeqAIJ *bB;
28287c612885SStefano Zampini     PetscInt    bs, nnz;
28299566063dSJacob Faibussowitsch     PetscCall(MatDestroy(&b->A));
28309566063dSJacob Faibussowitsch     PetscCall(MatDestroy(&b->B));
28317c612885SStefano Zampini     /* just clear out the data structure */
2832eb14dd14SAlex Lindsay     PetscCall(MatDisAssemble_MPIAIJ(B, PETSC_FALSE));
28339566063dSJacob Faibussowitsch     PetscCall(MatConvert_SeqBAIJ_SeqAIJ(a->A, MATSEQAIJ, MAT_INITIAL_MATRIX, &b->A));
28349566063dSJacob Faibussowitsch     PetscCall(MatConvert_SeqBAIJ_SeqAIJ(a->B, MATSEQAIJ, MAT_INITIAL_MATRIX, &b->B));
28357c612885SStefano Zampini 
28367c612885SStefano Zampini     /* Global numbering for b->B columns */
28377c612885SStefano Zampini     bB  = (Mat_SeqAIJ *)b->B->data;
28387c612885SStefano Zampini     bs  = A->rmap->bs;
28397c612885SStefano Zampini     nnz = bB->i[A->rmap->n];
28407c612885SStefano Zampini     for (PetscInt k = 0; k < nnz; k++) {
28417c612885SStefano Zampini       PetscInt bj = bB->j[k] / bs;
28427c612885SStefano Zampini       PetscInt br = bB->j[k] % bs;
28437c612885SStefano Zampini       bB->j[k]    = garray[bj] * bs + br;
28447c612885SStefano Zampini     }
28450f6d62edSLisandro Dalcin   }
28469566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY));
28479566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY));
28480f6d62edSLisandro Dalcin 
2849511c6705SHong Zhang   if (reuse == MAT_INPLACE_MATRIX) {
28509566063dSJacob Faibussowitsch     PetscCall(MatHeaderReplace(A, &B));
285162471d69SBarry Smith   } else {
285262471d69SBarry Smith     *newmat = B;
285362471d69SBarry Smith   }
28543ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
285562471d69SBarry Smith }
285662471d69SBarry Smith 
28570bad9183SKris Buschelman /*MC
2858fafad747SKris Buschelman    MATMPIBAIJ - MATMPIBAIJ = "mpibaij" - A matrix type to be used for distributed block sparse matrices.
28590bad9183SKris Buschelman 
28600bad9183SKris Buschelman    Options Database Keys:
286111a5261eSBarry Smith + -mat_type mpibaij - sets the matrix type to `MATMPIBAIJ` during a call to `MatSetFromOptions()`
28628c07d4e3SBarry Smith . -mat_block_size <bs> - set the blocksize used to store the matrix
28636679dcc1SBarry Smith . -mat_baij_mult_version version - indicate the version of the matrix-vector product to use  (0 often indicates using BLAS)
286467b8a455SSatish Balay - -mat_use_hash_table <fact> - set hash table factor
28650bad9183SKris Buschelman 
28660bad9183SKris Buschelman    Level: beginner
28670cd7f59aSBarry Smith 
286811a5261eSBarry Smith    Note:
28695e0ad47dSPierre Jolivet     `MatSetOption(A, MAT_STRUCTURE_ONLY, PETSC_TRUE)` may be called for this matrix type. In this no
287011a5261eSBarry Smith     space is allocated for the nonzero entries and any entries passed with `MatSetValues()` are ignored
28710bad9183SKris Buschelman 
28725e0ad47dSPierre Jolivet .seealso: `Mat`, `MATBAIJ`, `MATSEQBAIJ`, `MatCreateBAIJ`
28730bad9183SKris Buschelman M*/
28740bad9183SKris Buschelman 
2875cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIBAIJ_MPIBSTRM(Mat, MatType, MatReuse, Mat *);
2876c0cdd4a1SDahai Guo 
2877d71ae5a4SJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatCreate_MPIBAIJ(Mat B)
2878d71ae5a4SJacob Faibussowitsch {
2879273d9f13SBarry Smith   Mat_MPIBAIJ *b;
288094ae4db5SBarry Smith   PetscBool    flg = PETSC_FALSE;
2881273d9f13SBarry Smith 
2882273d9f13SBarry Smith   PetscFunctionBegin;
28834dfa11a4SJacob Faibussowitsch   PetscCall(PetscNew(&b));
288482502324SSatish Balay   B->data      = (void *)b;
2885aea10558SJacob Faibussowitsch   B->ops[0]    = MatOps_Values;
2886273d9f13SBarry Smith   B->assembled = PETSC_FALSE;
2887273d9f13SBarry Smith 
2888273d9f13SBarry Smith   B->insertmode = NOT_SET_VALUES;
28899566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)B), &b->rank));
28909566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)B), &b->size));
2891273d9f13SBarry Smith 
2892273d9f13SBarry Smith   /* build local table of row and column ownerships */
28939566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(b->size + 1, &b->rangebs));
2894273d9f13SBarry Smith 
2895273d9f13SBarry Smith   /* build cache for off array entries formed */
28969566063dSJacob Faibussowitsch   PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)B), 1, &B->stash));
289726fbe8dcSKarl Rupp 
2898273d9f13SBarry Smith   b->donotstash  = PETSC_FALSE;
28990298fd71SBarry Smith   b->colmap      = NULL;
29000298fd71SBarry Smith   b->garray      = NULL;
2901273d9f13SBarry Smith   b->roworiented = PETSC_TRUE;
2902273d9f13SBarry Smith 
2903273d9f13SBarry Smith   /* stuff used in block assembly */
2904f4259b30SLisandro Dalcin   b->barray = NULL;
2905273d9f13SBarry Smith 
2906273d9f13SBarry Smith   /* stuff used for matrix vector multiply */
2907f4259b30SLisandro Dalcin   b->lvec  = NULL;
2908f4259b30SLisandro Dalcin   b->Mvctx = NULL;
2909273d9f13SBarry Smith 
2910273d9f13SBarry Smith   /* stuff for MatGetRow() */
2911f4259b30SLisandro Dalcin   b->rowindices   = NULL;
2912f4259b30SLisandro Dalcin   b->rowvalues    = NULL;
2913273d9f13SBarry Smith   b->getrowactive = PETSC_FALSE;
2914273d9f13SBarry Smith 
2915273d9f13SBarry Smith   /* hash table stuff */
2916f4259b30SLisandro Dalcin   b->ht           = NULL;
2917f4259b30SLisandro Dalcin   b->hd           = NULL;
2918273d9f13SBarry Smith   b->ht_size      = 0;
2919273d9f13SBarry Smith   b->ht_flag      = PETSC_FALSE;
2920273d9f13SBarry Smith   b->ht_fact      = 0;
2921273d9f13SBarry Smith   b->ht_total_ct  = 0;
2922273d9f13SBarry Smith   b->ht_insert_ct = 0;
2923273d9f13SBarry Smith 
29247dae84e0SHong Zhang   /* stuff for MatCreateSubMatrices_MPIBAIJ_local() */
29257a868f3eSHong Zhang   b->ijonly = PETSC_FALSE;
29267a868f3eSHong Zhang 
29279566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpibaij_mpiadj_C", MatConvert_MPIBAIJ_MPIAdj));
29289566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpibaij_mpiaij_C", MatConvert_MPIBAIJ_MPIAIJ));
29299566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpibaij_mpisbaij_C", MatConvert_MPIBAIJ_MPISBAIJ));
29307ea3e4caSstefano_zampini #if defined(PETSC_HAVE_HYPRE)
29319566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpibaij_hypre_C", MatConvert_AIJ_HYPRE));
29327ea3e4caSstefano_zampini #endif
29339566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatStoreValues_C", MatStoreValues_MPIBAIJ));
29349566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatRetrieveValues_C", MatRetrieveValues_MPIBAIJ));
29359566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMPIBAIJSetPreallocation_C", MatMPIBAIJSetPreallocation_MPIBAIJ));
29369566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMPIBAIJSetPreallocationCSR_C", MatMPIBAIJSetPreallocationCSR_MPIBAIJ));
29379566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatDiagonalScaleLocal_C", MatDiagonalScaleLocal_MPIBAIJ));
29389566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatSetHashTableFactor_C", MatSetHashTableFactor_MPIBAIJ));
29399566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpibaij_is_C", MatConvert_XAIJ_IS));
29409566063dSJacob Faibussowitsch   PetscCall(PetscObjectChangeTypeName((PetscObject)B, MATMPIBAIJ));
294194ae4db5SBarry Smith 
2942d0609cedSBarry Smith   PetscOptionsBegin(PetscObjectComm((PetscObject)B), NULL, "Options for loading MPIBAIJ matrix 1", "Mat");
29439566063dSJacob Faibussowitsch   PetscCall(PetscOptionsName("-mat_use_hash_table", "Use hash table to save time in constructing matrix", "MatSetOption", &flg));
294494ae4db5SBarry Smith   if (flg) {
294594ae4db5SBarry Smith     PetscReal fact = 1.39;
29469566063dSJacob Faibussowitsch     PetscCall(MatSetOption(B, MAT_USE_HASH_TABLE, PETSC_TRUE));
29479566063dSJacob Faibussowitsch     PetscCall(PetscOptionsReal("-mat_use_hash_table", "Use hash table factor", "MatMPIBAIJSetHashTableFactor", fact, &fact, NULL));
294894ae4db5SBarry Smith     if (fact <= 1.0) fact = 1.39;
29499566063dSJacob Faibussowitsch     PetscCall(MatMPIBAIJSetHashTableFactor(B, fact));
29509566063dSJacob Faibussowitsch     PetscCall(PetscInfo(B, "Hash table Factor used %5.2g\n", (double)fact));
295194ae4db5SBarry Smith   }
2952d0609cedSBarry Smith   PetscOptionsEnd();
29533ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2954273d9f13SBarry Smith }
2955273d9f13SBarry Smith 
29562920cce0SJacob Faibussowitsch // PetscClangLinter pragma disable: -fdoc-section-header-unknown
2957209238afSKris Buschelman /*MC
2958002d173eSKris Buschelman    MATBAIJ - MATBAIJ = "baij" - A matrix type to be used for block sparse matrices.
2959209238afSKris Buschelman 
296011a5261eSBarry Smith    This matrix type is identical to `MATSEQBAIJ` when constructed with a single process communicator,
296111a5261eSBarry Smith    and `MATMPIBAIJ` otherwise.
2962209238afSKris Buschelman 
2963209238afSKris Buschelman    Options Database Keys:
296411a5261eSBarry Smith . -mat_type baij - sets the matrix type to `MATBAIJ` during a call to `MatSetFromOptions()`
2965209238afSKris Buschelman 
2966209238afSKris Buschelman   Level: beginner
2967209238afSKris Buschelman 
296867be906fSBarry Smith .seealso: `Mat`, `MatCreateBAIJ()`, `MATSEQBAIJ`, `MATMPIBAIJ`, `MatMPIBAIJSetPreallocation()`, `MatMPIBAIJSetPreallocationCSR()`
2969209238afSKris Buschelman M*/
2970209238afSKris Buschelman 
29715d83a8b1SBarry Smith /*@
297211a5261eSBarry Smith   MatMPIBAIJSetPreallocation - Allocates memory for a sparse parallel matrix in `MATMPIBAIJ` format
297367be906fSBarry Smith   (block compressed row).
2974273d9f13SBarry Smith 
2975c3339decSBarry Smith   Collective
2976273d9f13SBarry Smith 
2977273d9f13SBarry Smith   Input Parameters:
29781c4f3114SJed Brown + B     - the matrix
297911a5261eSBarry Smith . bs    - size of block, the blocks are ALWAYS square. One can use `MatSetBlockSizes()` to set a different row and column blocksize but the row
298067be906fSBarry Smith           blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with `MatCreateVecs()`
2981273d9f13SBarry Smith . d_nz  - number of block nonzeros per block row in diagonal portion of local
2982273d9f13SBarry Smith            submatrix  (same for all local rows)
2983273d9f13SBarry Smith . d_nnz - array containing the number of block nonzeros in the various block rows
2984273d9f13SBarry Smith            of the in diagonal portion of the local (possibly different for each block
298567be906fSBarry Smith            row) or `NULL`.  If you plan to factor the matrix you must leave room for the diagonal entry and
298695742e49SBarry Smith            set it even if it is zero.
2987273d9f13SBarry Smith . o_nz  - number of block nonzeros per block row in the off-diagonal portion of local
2988273d9f13SBarry Smith            submatrix (same for all local rows).
2989273d9f13SBarry Smith - o_nnz - array containing the number of nonzeros in the various block rows of the
2990273d9f13SBarry Smith            off-diagonal portion of the local submatrix (possibly different for
299167be906fSBarry Smith            each block row) or `NULL`.
2992273d9f13SBarry Smith 
299349a6f317SBarry Smith    If the *_nnz parameter is given then the *_nz parameter is ignored
2994273d9f13SBarry Smith 
2995273d9f13SBarry Smith   Options Database Keys:
29968c07d4e3SBarry Smith + -mat_block_size            - size of the blocks to use
299767b8a455SSatish Balay - -mat_use_hash_table <fact> - set hash table factor
2998273d9f13SBarry Smith 
299967be906fSBarry Smith   Level: intermediate
300067be906fSBarry Smith 
3001273d9f13SBarry Smith   Notes:
300267be906fSBarry Smith   For good matrix assembly performance
300367be906fSBarry Smith   the user should preallocate the matrix storage by setting the parameters
300467be906fSBarry Smith   `d_nz` (or `d_nnz`) and `o_nz` (or `o_nnz`).  By setting these parameters accurately,
300567be906fSBarry Smith   performance can be increased by more than a factor of 50.
300667be906fSBarry Smith 
300711a5261eSBarry Smith   If `PETSC_DECIDE` or  `PETSC_DETERMINE` is used for a particular argument on one processor
3008273d9f13SBarry Smith   than it must be used on all processors that share the object for that argument.
3009273d9f13SBarry Smith 
3010273d9f13SBarry Smith   Storage Information:
3011273d9f13SBarry Smith   For a square global matrix we define each processor's diagonal portion
3012273d9f13SBarry Smith   to be its local rows and the corresponding columns (a square submatrix);
3013273d9f13SBarry Smith   each processor's off-diagonal portion encompasses the remainder of the
3014273d9f13SBarry Smith   local matrix (a rectangular submatrix).
3015273d9f13SBarry Smith 
3016273d9f13SBarry Smith   The user can specify preallocated storage for the diagonal part of
301767be906fSBarry Smith   the local submatrix with either `d_nz` or `d_nnz` (not both).  Set
301867be906fSBarry Smith   `d_nz` = `PETSC_DEFAULT` and `d_nnz` = `NULL` for PETSc to control dynamic
3019273d9f13SBarry Smith   memory allocation.  Likewise, specify preallocated storage for the
302067be906fSBarry Smith   off-diagonal part of the local submatrix with `o_nz` or `o_nnz` (not both).
3021273d9f13SBarry Smith 
3022273d9f13SBarry Smith   Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
3023273d9f13SBarry Smith   the figure below we depict these three local rows and all columns (0-11).
3024273d9f13SBarry Smith 
3025273d9f13SBarry Smith .vb
3026273d9f13SBarry Smith            0 1 2 3 4 5 6 7 8 9 10 11
3027a4b1a0f6SJed Brown           --------------------------
3028273d9f13SBarry Smith    row 3  |o o o d d d o o o o  o  o
3029273d9f13SBarry Smith    row 4  |o o o d d d o o o o  o  o
3030273d9f13SBarry Smith    row 5  |o o o d d d o o o o  o  o
3031a4b1a0f6SJed Brown           --------------------------
3032273d9f13SBarry Smith .ve
3033273d9f13SBarry Smith 
3034273d9f13SBarry Smith   Thus, any entries in the d locations are stored in the d (diagonal)
3035273d9f13SBarry Smith   submatrix, and any entries in the o locations are stored in the
3036273d9f13SBarry Smith   o (off-diagonal) submatrix.  Note that the d and the o submatrices are
303711a5261eSBarry Smith   stored simply in the `MATSEQBAIJ` format for compressed row storage.
3038273d9f13SBarry Smith 
303967be906fSBarry Smith   Now `d_nz` should indicate the number of block nonzeros per row in the d matrix,
304067be906fSBarry Smith   and `o_nz` should indicate the number of block nonzeros per row in the o matrix.
3041273d9f13SBarry Smith   In general, for PDE problems in which most nonzeros are near the diagonal,
304220f4b53cSBarry Smith   one expects `d_nz` >> `o_nz`.
3043273d9f13SBarry Smith 
304411a5261eSBarry Smith   You can call `MatGetInfo()` to get information on how effective the preallocation was;
3045aa95bbe8SBarry Smith   for example the fields mallocs,nz_allocated,nz_used,nz_unneeded;
304667be906fSBarry Smith   You can also run with the option `-info` and look for messages with the string
3047aa95bbe8SBarry Smith   malloc in them to see if additional memory allocation was needed.
3048aa95bbe8SBarry Smith 
304967be906fSBarry Smith .seealso: `Mat`, `MATMPIBAIJ`, `MatCreate()`, `MatCreateSeqBAIJ()`, `MatSetValues()`, `MatCreateBAIJ()`, `MatMPIBAIJSetPreallocationCSR()`, `PetscSplitOwnership()`
3050273d9f13SBarry Smith @*/
3051d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIBAIJSetPreallocation(Mat B, PetscInt bs, PetscInt d_nz, const PetscInt d_nnz[], PetscInt o_nz, const PetscInt o_nnz[])
3052d71ae5a4SJacob Faibussowitsch {
3053273d9f13SBarry Smith   PetscFunctionBegin;
30546ba663aaSJed Brown   PetscValidHeaderSpecific(B, MAT_CLASSID, 1);
30556ba663aaSJed Brown   PetscValidType(B, 1);
30566ba663aaSJed Brown   PetscValidLogicalCollectiveInt(B, bs, 2);
3057cac4c232SBarry Smith   PetscTryMethod(B, "MatMPIBAIJSetPreallocation_C", (Mat, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[]), (B, bs, d_nz, d_nnz, o_nz, o_nnz));
30583ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3059273d9f13SBarry Smith }
3060273d9f13SBarry Smith 
30612920cce0SJacob Faibussowitsch // PetscClangLinter pragma disable: -fdoc-section-header-unknown
30625d83a8b1SBarry Smith /*@
306311a5261eSBarry Smith   MatCreateBAIJ - Creates a sparse parallel matrix in `MATBAIJ` format
306467be906fSBarry Smith   (block compressed row).
306579bdfe76SSatish Balay 
3066d083f849SBarry Smith   Collective
3067db81eaa0SLois Curfman McInnes 
306879bdfe76SSatish Balay   Input Parameters:
3069db81eaa0SLois Curfman McInnes + comm  - MPI communicator
307011a5261eSBarry Smith . bs    - size of block, the blocks are ALWAYS square. One can use `MatSetBlockSizes()` to set a different row and column blocksize but the row
307111a5261eSBarry Smith           blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with `MatCreateVecs()`
307211a5261eSBarry Smith . m     - number of local rows (or `PETSC_DECIDE` to have calculated if M is given)
307392e8d321SLois Curfman McInnes           This value should be the same as the local size used in creating the
307492e8d321SLois Curfman McInnes           y vector for the matrix-vector product y = Ax.
307511a5261eSBarry Smith . n     - number of local columns (or `PETSC_DECIDE` to have calculated if N is given)
307692e8d321SLois Curfman McInnes           This value should be the same as the local size used in creating the
307792e8d321SLois Curfman McInnes           x vector for the matrix-vector product y = Ax.
307811a5261eSBarry Smith . M     - number of global rows (or `PETSC_DETERMINE` to have calculated if m is given)
307911a5261eSBarry Smith . N     - number of global columns (or `PETSC_DETERMINE` to have calculated if n is given)
308047a75d0bSBarry Smith . d_nz  - number of nonzero blocks per block row in diagonal portion of local
308179bdfe76SSatish Balay           submatrix  (same for all local rows)
308247a75d0bSBarry Smith . d_nnz - array containing the number of nonzero blocks in the various block rows
308392e8d321SLois Curfman McInnes           of the in diagonal portion of the local (possibly different for each block
30840298fd71SBarry Smith           row) or NULL.  If you plan to factor the matrix you must leave room for the diagonal entry
308595742e49SBarry Smith           and set it even if it is zero.
308647a75d0bSBarry Smith . o_nz  - number of nonzero blocks per block row in the off-diagonal portion of local
308779bdfe76SSatish Balay           submatrix (same for all local rows).
308847a75d0bSBarry Smith - o_nnz - array containing the number of nonzero blocks in the various block rows of the
308992e8d321SLois Curfman McInnes           off-diagonal portion of the local submatrix (possibly different for
30900298fd71SBarry Smith           each block row) or NULL.
309179bdfe76SSatish Balay 
309279bdfe76SSatish Balay   Output Parameter:
309379bdfe76SSatish Balay . A - the matrix
309479bdfe76SSatish Balay 
3095db81eaa0SLois Curfman McInnes   Options Database Keys:
30968c07d4e3SBarry Smith + -mat_block_size            - size of the blocks to use
309767b8a455SSatish Balay - -mat_use_hash_table <fact> - set hash table factor
30983ffaccefSLois Curfman McInnes 
309967be906fSBarry Smith   Level: intermediate
310067be906fSBarry Smith 
310167be906fSBarry Smith   Notes:
310277433607SBarry Smith   It is recommended that one use `MatCreateFromOptions()` or the `MatCreate()`, `MatSetType()` and/or `MatSetFromOptions()`,
310377433607SBarry Smith   MatXXXXSetPreallocation() paradigm instead of this routine directly.
310477433607SBarry Smith   [MatXXXXSetPreallocation() is, for example, `MatSeqBAIJSetPreallocation()`]
310577433607SBarry Smith 
310667be906fSBarry Smith   For good matrix assembly performance
310767be906fSBarry Smith   the user should preallocate the matrix storage by setting the parameters
310867be906fSBarry Smith   `d_nz` (or `d_nnz`) and `o_nz` (or `o_nnz`).  By setting these parameters accurately,
310967be906fSBarry Smith   performance can be increased by more than a factor of 50.
311067be906fSBarry Smith 
311149a6f317SBarry Smith   If the *_nnz parameter is given then the *_nz parameter is ignored
311249a6f317SBarry Smith 
311347a75d0bSBarry Smith   A nonzero block is any block that as 1 or more nonzeros in it
311447a75d0bSBarry Smith 
311579bdfe76SSatish Balay   The user MUST specify either the local or global matrix dimensions
311679bdfe76SSatish Balay   (possibly both).
311779bdfe76SSatish Balay 
311811a5261eSBarry Smith   If `PETSC_DECIDE` or  `PETSC_DETERMINE` is used for a particular argument on one processor
3119be79a94dSBarry Smith   than it must be used on all processors that share the object for that argument.
3120be79a94dSBarry Smith 
3121727bdf9bSBarry Smith   If `m` and `n` are not `PETSC_DECIDE`, then the values determine the `PetscLayout` of the matrix and the ranges returned by
3122727bdf9bSBarry Smith   `MatGetOwnershipRange()`,  `MatGetOwnershipRanges()`, `MatGetOwnershipRangeColumn()`, and `MatGetOwnershipRangesColumn()`.
3123727bdf9bSBarry Smith 
312479bdfe76SSatish Balay   Storage Information:
312579bdfe76SSatish Balay   For a square global matrix we define each processor's diagonal portion
312679bdfe76SSatish Balay   to be its local rows and the corresponding columns (a square submatrix);
312779bdfe76SSatish Balay   each processor's off-diagonal portion encompasses the remainder of the
312879bdfe76SSatish Balay   local matrix (a rectangular submatrix).
312979bdfe76SSatish Balay 
313079bdfe76SSatish Balay   The user can specify preallocated storage for the diagonal part of
313179bdfe76SSatish Balay   the local submatrix with either d_nz or d_nnz (not both).  Set
313267be906fSBarry Smith   `d_nz` = `PETSC_DEFAULT` and `d_nnz` = `NULL` for PETSc to control dynamic
313379bdfe76SSatish Balay   memory allocation.  Likewise, specify preallocated storage for the
313467be906fSBarry Smith   off-diagonal part of the local submatrix with `o_nz` or `o_nnz` (not both).
313579bdfe76SSatish Balay 
313679bdfe76SSatish Balay   Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
313779bdfe76SSatish Balay   the figure below we depict these three local rows and all columns (0-11).
313879bdfe76SSatish Balay 
3139db81eaa0SLois Curfman McInnes .vb
3140db81eaa0SLois Curfman McInnes            0 1 2 3 4 5 6 7 8 9 10 11
3141a4b1a0f6SJed Brown           --------------------------
3142db81eaa0SLois Curfman McInnes    row 3  |o o o d d d o o o o  o  o
3143db81eaa0SLois Curfman McInnes    row 4  |o o o d d d o o o o  o  o
3144db81eaa0SLois Curfman McInnes    row 5  |o o o d d d o o o o  o  o
3145a4b1a0f6SJed Brown           --------------------------
3146db81eaa0SLois Curfman McInnes .ve
314779bdfe76SSatish Balay 
314879bdfe76SSatish Balay   Thus, any entries in the d locations are stored in the d (diagonal)
314979bdfe76SSatish Balay   submatrix, and any entries in the o locations are stored in the
315079bdfe76SSatish Balay   o (off-diagonal) submatrix.  Note that the d and the o submatrices are
315111a5261eSBarry Smith   stored simply in the `MATSEQBAIJ` format for compressed row storage.
315279bdfe76SSatish Balay 
315367be906fSBarry Smith   Now `d_nz` should indicate the number of block nonzeros per row in the d matrix,
315467be906fSBarry Smith   and `o_nz` should indicate the number of block nonzeros per row in the o matrix.
315579bdfe76SSatish Balay   In general, for PDE problems in which most nonzeros are near the diagonal,
315620f4b53cSBarry Smith   one expects `d_nz` >> `o_nz`.
315779bdfe76SSatish Balay 
3158727bdf9bSBarry Smith .seealso: `Mat`, `MatCreate()`, `MatCreateSeqBAIJ()`, `MatSetValues()`, `MatMPIBAIJSetPreallocation()`, `MatMPIBAIJSetPreallocationCSR()`,
3159727bdf9bSBarry Smith           `MatGetOwnershipRange()`,  `MatGetOwnershipRanges()`, `MatGetOwnershipRangeColumn()`, `MatGetOwnershipRangesColumn()`, `PetscLayout`
316079bdfe76SSatish Balay @*/
3161d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateBAIJ(MPI_Comm comm, PetscInt bs, PetscInt m, PetscInt n, PetscInt M, PetscInt N, PetscInt d_nz, const PetscInt d_nnz[], PetscInt o_nz, const PetscInt o_nnz[], Mat *A)
3162d71ae5a4SJacob Faibussowitsch {
3163b24ad042SBarry Smith   PetscMPIInt size;
316479bdfe76SSatish Balay 
3165d64ed03dSBarry Smith   PetscFunctionBegin;
31669566063dSJacob Faibussowitsch   PetscCall(MatCreate(comm, A));
31679566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(*A, m, n, M, N));
31689566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
3169273d9f13SBarry Smith   if (size > 1) {
31709566063dSJacob Faibussowitsch     PetscCall(MatSetType(*A, MATMPIBAIJ));
31719566063dSJacob Faibussowitsch     PetscCall(MatMPIBAIJSetPreallocation(*A, bs, d_nz, d_nnz, o_nz, o_nnz));
3172273d9f13SBarry Smith   } else {
31739566063dSJacob Faibussowitsch     PetscCall(MatSetType(*A, MATSEQBAIJ));
31749566063dSJacob Faibussowitsch     PetscCall(MatSeqBAIJSetPreallocation(*A, bs, d_nz, d_nnz));
31753914022bSBarry Smith   }
31763ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
317779bdfe76SSatish Balay }
3178026e39d0SSatish Balay 
3179d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatDuplicate_MPIBAIJ(Mat matin, MatDuplicateOption cpvalues, Mat *newmat)
3180d71ae5a4SJacob Faibussowitsch {
31810ac07820SSatish Balay   Mat          mat;
31820ac07820SSatish Balay   Mat_MPIBAIJ *a, *oldmat = (Mat_MPIBAIJ *)matin->data;
3183b24ad042SBarry Smith   PetscInt     len = 0;
31840ac07820SSatish Balay 
3185d64ed03dSBarry Smith   PetscFunctionBegin;
3186f4259b30SLisandro Dalcin   *newmat = NULL;
31879566063dSJacob Faibussowitsch   PetscCall(MatCreate(PetscObjectComm((PetscObject)matin), &mat));
31889566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(mat, matin->rmap->n, matin->cmap->n, matin->rmap->N, matin->cmap->N));
31899566063dSJacob Faibussowitsch   PetscCall(MatSetType(mat, ((PetscObject)matin)->type_name));
31907fff6886SHong Zhang 
3191420957c1SBarry Smith   PetscCall(PetscLayoutReference(matin->rmap, &mat->rmap));
3192420957c1SBarry Smith   PetscCall(PetscLayoutReference(matin->cmap, &mat->cmap));
3193420957c1SBarry Smith   if (matin->hash_active) {
3194420957c1SBarry Smith     PetscCall(MatSetUp(mat));
3195420957c1SBarry Smith   } else {
3196d5f3da31SBarry Smith     mat->factortype   = matin->factortype;
3197273d9f13SBarry Smith     mat->preallocated = PETSC_TRUE;
31980ac07820SSatish Balay     mat->assembled    = PETSC_TRUE;
31997fff6886SHong Zhang     mat->insertmode   = NOT_SET_VALUES;
32007fff6886SHong Zhang 
3201273d9f13SBarry Smith     a             = (Mat_MPIBAIJ *)mat->data;
3202d0f46423SBarry Smith     mat->rmap->bs = matin->rmap->bs;
32030ac07820SSatish Balay     a->bs2        = oldmat->bs2;
32040ac07820SSatish Balay     a->mbs        = oldmat->mbs;
32050ac07820SSatish Balay     a->nbs        = oldmat->nbs;
32060ac07820SSatish Balay     a->Mbs        = oldmat->Mbs;
32070ac07820SSatish Balay     a->Nbs        = oldmat->Nbs;
32080ac07820SSatish Balay 
32090ac07820SSatish Balay     a->size         = oldmat->size;
32100ac07820SSatish Balay     a->rank         = oldmat->rank;
3211aef5e8e0SSatish Balay     a->donotstash   = oldmat->donotstash;
3212aef5e8e0SSatish Balay     a->roworiented  = oldmat->roworiented;
3213f4259b30SLisandro Dalcin     a->rowindices   = NULL;
3214f4259b30SLisandro Dalcin     a->rowvalues    = NULL;
32150ac07820SSatish Balay     a->getrowactive = PETSC_FALSE;
3216f4259b30SLisandro Dalcin     a->barray       = NULL;
3217899cda47SBarry Smith     a->rstartbs     = oldmat->rstartbs;
3218899cda47SBarry Smith     a->rendbs       = oldmat->rendbs;
3219899cda47SBarry Smith     a->cstartbs     = oldmat->cstartbs;
3220899cda47SBarry Smith     a->cendbs       = oldmat->cendbs;
32210ac07820SSatish Balay 
3222133cdb44SSatish Balay     /* hash table stuff */
3223f4259b30SLisandro Dalcin     a->ht           = NULL;
3224f4259b30SLisandro Dalcin     a->hd           = NULL;
3225133cdb44SSatish Balay     a->ht_size      = 0;
3226133cdb44SSatish Balay     a->ht_flag      = oldmat->ht_flag;
322725fdafccSSatish Balay     a->ht_fact      = oldmat->ht_fact;
3228133cdb44SSatish Balay     a->ht_total_ct  = 0;
3229133cdb44SSatish Balay     a->ht_insert_ct = 0;
3230133cdb44SSatish Balay 
32319566063dSJacob Faibussowitsch     PetscCall(PetscArraycpy(a->rangebs, oldmat->rangebs, a->size + 1));
32320ac07820SSatish Balay     if (oldmat->colmap) {
3233aa482453SBarry Smith #if defined(PETSC_USE_CTABLE)
3234eec179cfSJacob Faibussowitsch       PetscCall(PetscHMapIDuplicate(oldmat->colmap, &a->colmap));
323548e59246SSatish Balay #else
32369566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(a->Nbs, &a->colmap));
32379566063dSJacob Faibussowitsch       PetscCall(PetscArraycpy(a->colmap, oldmat->colmap, a->Nbs));
323848e59246SSatish Balay #endif
3239f4259b30SLisandro Dalcin     } else a->colmap = NULL;
32404beb1cfeSHong Zhang 
3241f4f49eeaSPierre Jolivet     if (oldmat->garray && (len = ((Mat_SeqBAIJ *)oldmat->B->data)->nbs)) {
32429566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(len, &a->garray));
32439566063dSJacob Faibussowitsch       PetscCall(PetscArraycpy(a->garray, oldmat->garray, len));
3244f4259b30SLisandro Dalcin     } else a->garray = NULL;
32450ac07820SSatish Balay 
32469566063dSJacob Faibussowitsch     PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)matin), matin->rmap->bs, &mat->bstash));
32479566063dSJacob Faibussowitsch     PetscCall(VecDuplicate(oldmat->lvec, &a->lvec));
32489566063dSJacob Faibussowitsch     PetscCall(VecScatterCopy(oldmat->Mvctx, &a->Mvctx));
32497fff6886SHong Zhang 
32509566063dSJacob Faibussowitsch     PetscCall(MatDuplicate(oldmat->A, cpvalues, &a->A));
32519566063dSJacob Faibussowitsch     PetscCall(MatDuplicate(oldmat->B, cpvalues, &a->B));
3252420957c1SBarry Smith   }
32539566063dSJacob Faibussowitsch   PetscCall(PetscFunctionListDuplicate(((PetscObject)matin)->qlist, &((PetscObject)mat)->qlist));
32540ac07820SSatish Balay   *newmat = mat;
32553ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
32560ac07820SSatish Balay }
325757b952d6SSatish Balay 
3258618cc2edSLisandro Dalcin /* Used for both MPIBAIJ and MPISBAIJ matrices */
3259d71ae5a4SJacob Faibussowitsch PetscErrorCode MatLoad_MPIBAIJ_Binary(Mat mat, PetscViewer viewer)
3260d71ae5a4SJacob Faibussowitsch {
3261b51a4376SLisandro Dalcin   PetscInt     header[4], M, N, nz, bs, m, n, mbs, nbs, rows, cols, sum, i, j, k;
3262b51a4376SLisandro Dalcin   PetscInt    *rowidxs, *colidxs, rs, cs, ce;
3263b51a4376SLisandro Dalcin   PetscScalar *matvals;
3264b51a4376SLisandro Dalcin 
3265b51a4376SLisandro Dalcin   PetscFunctionBegin;
32669566063dSJacob Faibussowitsch   PetscCall(PetscViewerSetUp(viewer));
3267b51a4376SLisandro Dalcin 
3268b51a4376SLisandro Dalcin   /* read in matrix header */
32699566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryRead(viewer, header, 4, NULL, PETSC_INT));
32705f80ce2aSJacob Faibussowitsch   PetscCheck(header[0] == MAT_FILE_CLASSID, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Not a matrix object in file");
32719371c9d4SSatish Balay   M  = header[1];
32729371c9d4SSatish Balay   N  = header[2];
32739371c9d4SSatish Balay   nz = header[3];
32745f80ce2aSJacob Faibussowitsch   PetscCheck(M >= 0, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Matrix row size (%" PetscInt_FMT ") in file is negative", M);
32755f80ce2aSJacob Faibussowitsch   PetscCheck(N >= 0, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Matrix column size (%" PetscInt_FMT ") in file is negative", N);
32765f80ce2aSJacob Faibussowitsch   PetscCheck(nz >= 0, PETSC_COMM_SELF, PETSC_ERR_FILE_UNEXPECTED, "Matrix stored in special format on disk, cannot load as MPIBAIJ");
3277b51a4376SLisandro Dalcin 
3278b51a4376SLisandro Dalcin   /* set block sizes from the viewer's .info file */
32799566063dSJacob Faibussowitsch   PetscCall(MatLoad_Binary_BlockSizes(mat, viewer));
3280618cc2edSLisandro Dalcin   /* set local sizes if not set already */
3281618cc2edSLisandro Dalcin   if (mat->rmap->n < 0 && M == N) mat->rmap->n = mat->cmap->n;
3282618cc2edSLisandro Dalcin   if (mat->cmap->n < 0 && M == N) mat->cmap->n = mat->rmap->n;
3283b51a4376SLisandro Dalcin   /* set global sizes if not set already */
3284b51a4376SLisandro Dalcin   if (mat->rmap->N < 0) mat->rmap->N = M;
3285b51a4376SLisandro Dalcin   if (mat->cmap->N < 0) mat->cmap->N = N;
32869566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(mat->rmap));
32879566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(mat->cmap));
3288b51a4376SLisandro Dalcin 
3289b51a4376SLisandro Dalcin   /* check if the matrix sizes are correct */
32909566063dSJacob Faibussowitsch   PetscCall(MatGetSize(mat, &rows, &cols));
32915f80ce2aSJacob Faibussowitsch   PetscCheck(M == rows && N == cols, PETSC_COMM_SELF, PETSC_ERR_FILE_UNEXPECTED, "Matrix in file of different sizes (%" PetscInt_FMT ", %" PetscInt_FMT ") than the input matrix (%" PetscInt_FMT ", %" PetscInt_FMT ")", M, N, rows, cols);
32929566063dSJacob Faibussowitsch   PetscCall(MatGetBlockSize(mat, &bs));
32939566063dSJacob Faibussowitsch   PetscCall(MatGetLocalSize(mat, &m, &n));
32949566063dSJacob Faibussowitsch   PetscCall(PetscLayoutGetRange(mat->rmap, &rs, NULL));
32959566063dSJacob Faibussowitsch   PetscCall(PetscLayoutGetRange(mat->cmap, &cs, &ce));
32969371c9d4SSatish Balay   mbs = m / bs;
32979371c9d4SSatish Balay   nbs = n / bs;
3298b51a4376SLisandro Dalcin 
3299b51a4376SLisandro Dalcin   /* read in row lengths and build row indices */
33009566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(m + 1, &rowidxs));
33019566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryReadAll(viewer, rowidxs + 1, m, PETSC_DECIDE, M, PETSC_INT));
33029371c9d4SSatish Balay   rowidxs[0] = 0;
33039371c9d4SSatish Balay   for (i = 0; i < m; i++) rowidxs[i + 1] += rowidxs[i];
3304462c564dSBarry Smith   PetscCallMPI(MPIU_Allreduce(&rowidxs[m], &sum, 1, MPIU_INT, MPI_SUM, PetscObjectComm((PetscObject)viewer)));
33055f80ce2aSJacob Faibussowitsch   PetscCheck(sum == nz, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Inconsistent matrix data in file: nonzeros = %" PetscInt_FMT ", sum-row-lengths = %" PetscInt_FMT, nz, sum);
3306b51a4376SLisandro Dalcin 
3307b51a4376SLisandro Dalcin   /* read in column indices and matrix values */
33089566063dSJacob Faibussowitsch   PetscCall(PetscMalloc2(rowidxs[m], &colidxs, rowidxs[m], &matvals));
33099566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryReadAll(viewer, colidxs, rowidxs[m], PETSC_DETERMINE, PETSC_DETERMINE, PETSC_INT));
33109566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryReadAll(viewer, matvals, rowidxs[m], PETSC_DETERMINE, PETSC_DETERMINE, PETSC_SCALAR));
3311b51a4376SLisandro Dalcin 
3312b51a4376SLisandro Dalcin   {                /* preallocate matrix storage */
3313b51a4376SLisandro Dalcin     PetscBT    bt; /* helper bit set to count diagonal nonzeros */
3314b51a4376SLisandro Dalcin     PetscHSetI ht; /* helper hash set to count off-diagonal nonzeros */
3315618cc2edSLisandro Dalcin     PetscBool  sbaij, done;
3316b51a4376SLisandro Dalcin     PetscInt  *d_nnz, *o_nnz;
3317b51a4376SLisandro Dalcin 
33189566063dSJacob Faibussowitsch     PetscCall(PetscBTCreate(nbs, &bt));
33199566063dSJacob Faibussowitsch     PetscCall(PetscHSetICreate(&ht));
33209566063dSJacob Faibussowitsch     PetscCall(PetscCalloc2(mbs, &d_nnz, mbs, &o_nnz));
33219566063dSJacob Faibussowitsch     PetscCall(PetscObjectTypeCompare((PetscObject)mat, MATMPISBAIJ, &sbaij));
3322b51a4376SLisandro Dalcin     for (i = 0; i < mbs; i++) {
33239566063dSJacob Faibussowitsch       PetscCall(PetscBTMemzero(nbs, bt));
33249566063dSJacob Faibussowitsch       PetscCall(PetscHSetIClear(ht));
3325618cc2edSLisandro Dalcin       for (k = 0; k < bs; k++) {
3326618cc2edSLisandro Dalcin         PetscInt row = bs * i + k;
3327618cc2edSLisandro Dalcin         for (j = rowidxs[row]; j < rowidxs[row + 1]; j++) {
3328618cc2edSLisandro Dalcin           PetscInt col = colidxs[j];
3329618cc2edSLisandro Dalcin           if (!sbaij || col >= row) {
3330618cc2edSLisandro Dalcin             if (col >= cs && col < ce) {
3331618cc2edSLisandro Dalcin               if (!PetscBTLookupSet(bt, (col - cs) / bs)) d_nnz[i]++;
3332b51a4376SLisandro Dalcin             } else {
33339566063dSJacob Faibussowitsch               PetscCall(PetscHSetIQueryAdd(ht, col / bs, &done));
3334b51a4376SLisandro Dalcin               if (done) o_nnz[i]++;
3335b51a4376SLisandro Dalcin             }
3336b51a4376SLisandro Dalcin           }
3337618cc2edSLisandro Dalcin         }
3338618cc2edSLisandro Dalcin       }
3339618cc2edSLisandro Dalcin     }
33409566063dSJacob Faibussowitsch     PetscCall(PetscBTDestroy(&bt));
33419566063dSJacob Faibussowitsch     PetscCall(PetscHSetIDestroy(&ht));
33429566063dSJacob Faibussowitsch     PetscCall(MatMPIBAIJSetPreallocation(mat, bs, 0, d_nnz, 0, o_nnz));
33439566063dSJacob Faibussowitsch     PetscCall(MatMPISBAIJSetPreallocation(mat, bs, 0, d_nnz, 0, o_nnz));
33449566063dSJacob Faibussowitsch     PetscCall(PetscFree2(d_nnz, o_nnz));
3345b51a4376SLisandro Dalcin   }
3346b51a4376SLisandro Dalcin 
3347b51a4376SLisandro Dalcin   /* store matrix values */
3348b51a4376SLisandro Dalcin   for (i = 0; i < m; i++) {
3349b51a4376SLisandro Dalcin     PetscInt row = rs + i, s = rowidxs[i], e = rowidxs[i + 1];
33509927e4dfSBarry Smith     PetscUseTypeMethod(mat, setvalues, 1, &row, e - s, colidxs + s, matvals + s, INSERT_VALUES);
3351b51a4376SLisandro Dalcin   }
3352b51a4376SLisandro Dalcin 
33539566063dSJacob Faibussowitsch   PetscCall(PetscFree(rowidxs));
33549566063dSJacob Faibussowitsch   PetscCall(PetscFree2(colidxs, matvals));
33559566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(mat, MAT_FINAL_ASSEMBLY));
33569566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(mat, MAT_FINAL_ASSEMBLY));
33573ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3358b51a4376SLisandro Dalcin }
3359b51a4376SLisandro Dalcin 
3360d71ae5a4SJacob Faibussowitsch PetscErrorCode MatLoad_MPIBAIJ(Mat mat, PetscViewer viewer)
3361d71ae5a4SJacob Faibussowitsch {
33627f489da9SVaclav Hapla   PetscBool isbinary;
33634683f7a4SShri Abhyankar 
33644683f7a4SShri Abhyankar   PetscFunctionBegin;
33659566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary));
33665f80ce2aSJacob Faibussowitsch   PetscCheck(isbinary, PetscObjectComm((PetscObject)viewer), PETSC_ERR_SUP, "Viewer type %s not yet supported for reading %s matrices", ((PetscObject)viewer)->type_name, ((PetscObject)mat)->type_name);
33679566063dSJacob Faibussowitsch   PetscCall(MatLoad_MPIBAIJ_Binary(mat, viewer));
33683ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
33694683f7a4SShri Abhyankar }
33704683f7a4SShri Abhyankar 
3371133cdb44SSatish Balay /*@
337211a5261eSBarry Smith   MatMPIBAIJSetHashTableFactor - Sets the factor required to compute the size of the matrices hash table
3373133cdb44SSatish Balay 
3374133cdb44SSatish Balay   Input Parameters:
3375a2b725a8SWilliam Gropp + mat  - the matrix
3376a2b725a8SWilliam Gropp - fact - factor
3377133cdb44SSatish Balay 
337811a5261eSBarry Smith   Options Database Key:
337911a5261eSBarry Smith . -mat_use_hash_table <fact> - provide the factor
3380fee21e36SBarry Smith 
33818c890885SBarry Smith   Level: advanced
33828c890885SBarry Smith 
338367be906fSBarry Smith .seealso: `Mat`, `MATMPIBAIJ`, `MatSetOption()`
3384133cdb44SSatish Balay @*/
3385d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIBAIJSetHashTableFactor(Mat mat, PetscReal fact)
3386d71ae5a4SJacob Faibussowitsch {
33875bf65638SKris Buschelman   PetscFunctionBegin;
3388cac4c232SBarry Smith   PetscTryMethod(mat, "MatSetHashTableFactor_C", (Mat, PetscReal), (mat, fact));
33893ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
33905bf65638SKris Buschelman }
33915bf65638SKris Buschelman 
3392d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetHashTableFactor_MPIBAIJ(Mat mat, PetscReal fact)
3393d71ae5a4SJacob Faibussowitsch {
339425fdafccSSatish Balay   Mat_MPIBAIJ *baij;
3395133cdb44SSatish Balay 
3396133cdb44SSatish Balay   PetscFunctionBegin;
3397133cdb44SSatish Balay   baij          = (Mat_MPIBAIJ *)mat->data;
3398133cdb44SSatish Balay   baij->ht_fact = fact;
33993ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3400133cdb44SSatish Balay }
3401f2a5309cSSatish Balay 
3402d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIBAIJGetSeqBAIJ(Mat A, Mat *Ad, Mat *Ao, const PetscInt *colmap[])
3403d71ae5a4SJacob Faibussowitsch {
3404f2a5309cSSatish Balay   Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data;
3405ab4d48faSStefano Zampini   PetscBool    flg;
34065fd66863SKarl Rupp 
3407f2a5309cSSatish Balay   PetscFunctionBegin;
34089566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)A, MATMPIBAIJ, &flg));
34095f80ce2aSJacob Faibussowitsch   PetscCheck(flg, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "This function requires a MATMPIBAIJ matrix as input");
341021e72a00SBarry Smith   if (Ad) *Ad = a->A;
341121e72a00SBarry Smith   if (Ao) *Ao = a->B;
341221e72a00SBarry Smith   if (colmap) *colmap = a->garray;
34133ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3414f2a5309cSSatish Balay }
341585535b8eSBarry Smith 
341685535b8eSBarry Smith /*
341785535b8eSBarry Smith     Special version for direct calls from Fortran (to eliminate two function call overheads
341885535b8eSBarry Smith */
341985535b8eSBarry Smith #if defined(PETSC_HAVE_FORTRAN_CAPS)
342085535b8eSBarry Smith   #define matmpibaijsetvaluesblocked_ MATMPIBAIJSETVALUESBLOCKED
342185535b8eSBarry Smith #elif !defined(PETSC_HAVE_FORTRAN_UNDERSCORE)
342285535b8eSBarry Smith   #define matmpibaijsetvaluesblocked_ matmpibaijsetvaluesblocked
342385535b8eSBarry Smith #endif
342485535b8eSBarry Smith 
34252920cce0SJacob Faibussowitsch // PetscClangLinter pragma disable: -fdoc-synopsis-matching-symbol-name
342685535b8eSBarry Smith /*@C
342711a5261eSBarry Smith   MatMPIBAIJSetValuesBlocked - Direct Fortran call to replace call to `MatSetValuesBlocked()`
342885535b8eSBarry Smith 
3429c3339decSBarry Smith   Collective
343085535b8eSBarry Smith 
343185535b8eSBarry Smith   Input Parameters:
3432fe59aa6dSJacob Faibussowitsch + matin  - the matrix
343385535b8eSBarry Smith . min    - number of input rows
343485535b8eSBarry Smith . im     - input rows
343585535b8eSBarry Smith . nin    - number of input columns
343685535b8eSBarry Smith . in     - input columns
343785535b8eSBarry Smith . v      - numerical values input
343811a5261eSBarry Smith - addvin - `INSERT_VALUES` or `ADD_VALUES`
343985535b8eSBarry Smith 
344020f4b53cSBarry Smith   Level: advanced
344120f4b53cSBarry Smith 
3442fe59aa6dSJacob Faibussowitsch   Developer Notes:
344311a5261eSBarry Smith   This has a complete copy of `MatSetValuesBlocked_MPIBAIJ()` which is terrible code un-reuse.
344485535b8eSBarry Smith 
344567be906fSBarry Smith .seealso: `Mat`, `MatSetValuesBlocked()`
344685535b8eSBarry Smith @*/
344766976f2fSJacob Faibussowitsch PETSC_EXTERN PetscErrorCode matmpibaijsetvaluesblocked_(Mat *matin, PetscInt *min, const PetscInt im[], PetscInt *nin, const PetscInt in[], const MatScalar v[], InsertMode *addvin)
3448d71ae5a4SJacob Faibussowitsch {
344985535b8eSBarry Smith   /* convert input arguments to C version */
345085535b8eSBarry Smith   Mat        mat = *matin;
345185535b8eSBarry Smith   PetscInt   m = *min, n = *nin;
345285535b8eSBarry Smith   InsertMode addv = *addvin;
345385535b8eSBarry Smith 
345485535b8eSBarry Smith   Mat_MPIBAIJ     *baij = (Mat_MPIBAIJ *)mat->data;
345585535b8eSBarry Smith   const MatScalar *value;
345685535b8eSBarry Smith   MatScalar       *barray      = baij->barray;
3457ace3abfcSBarry Smith   PetscBool        roworiented = baij->roworiented;
345885535b8eSBarry Smith   PetscInt         i, j, ii, jj, row, col, rstart = baij->rstartbs;
345985535b8eSBarry Smith   PetscInt         rend = baij->rendbs, cstart = baij->cstartbs, stepval;
3460d0f46423SBarry Smith   PetscInt         cend = baij->cendbs, bs = mat->rmap->bs, bs2 = baij->bs2;
346185535b8eSBarry Smith 
346285535b8eSBarry Smith   PetscFunctionBegin;
346385535b8eSBarry Smith   /* tasks normally handled by MatSetValuesBlocked() */
346426fbe8dcSKarl Rupp   if (mat->insertmode == NOT_SET_VALUES) mat->insertmode = addv;
34655f80ce2aSJacob Faibussowitsch   else PetscCheck(mat->insertmode == addv, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Cannot mix add values and insert values");
34665f80ce2aSJacob Faibussowitsch   PetscCheck(!mat->factortype, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Not for factored matrix");
346785535b8eSBarry Smith   if (mat->assembled) {
346885535b8eSBarry Smith     mat->was_assembled = PETSC_TRUE;
346985535b8eSBarry Smith     mat->assembled     = PETSC_FALSE;
347085535b8eSBarry Smith   }
34719566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(MAT_SetValues, mat, 0, 0, 0));
347285535b8eSBarry Smith 
347385535b8eSBarry Smith   if (!barray) {
34749566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(bs2, &barray));
347585535b8eSBarry Smith     baij->barray = barray;
347685535b8eSBarry Smith   }
347785535b8eSBarry Smith 
347826fbe8dcSKarl Rupp   if (roworiented) stepval = (n - 1) * bs;
347926fbe8dcSKarl Rupp   else stepval = (m - 1) * bs;
348026fbe8dcSKarl Rupp 
348185535b8eSBarry Smith   for (i = 0; i < m; i++) {
348285535b8eSBarry Smith     if (im[i] < 0) continue;
34836bdcaf15SBarry Smith     PetscCheck(im[i] < baij->Mbs, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large, row %" PetscInt_FMT " max %" PetscInt_FMT, im[i], baij->Mbs - 1);
348485535b8eSBarry Smith     if (im[i] >= rstart && im[i] < rend) {
348585535b8eSBarry Smith       row = im[i] - rstart;
348685535b8eSBarry Smith       for (j = 0; j < n; j++) {
348785535b8eSBarry Smith         /* If NumCol = 1 then a copy is not required */
348885535b8eSBarry Smith         if ((roworiented) && (n == 1)) {
348985535b8eSBarry Smith           barray = (MatScalar *)v + i * bs2;
349085535b8eSBarry Smith         } else if ((!roworiented) && (m == 1)) {
349185535b8eSBarry Smith           barray = (MatScalar *)v + j * bs2;
349285535b8eSBarry Smith         } else { /* Here a copy is required */
349385535b8eSBarry Smith           if (roworiented) {
349485535b8eSBarry Smith             value = v + i * (stepval + bs) * bs + j * bs;
349585535b8eSBarry Smith           } else {
349685535b8eSBarry Smith             value = v + j * (stepval + bs) * bs + i * bs;
349785535b8eSBarry Smith           }
349885535b8eSBarry Smith           for (ii = 0; ii < bs; ii++, value += stepval) {
3499ad540459SPierre Jolivet             for (jj = 0; jj < bs; jj++) *barray++ = *value++;
350085535b8eSBarry Smith           }
350185535b8eSBarry Smith           barray -= bs2;
350285535b8eSBarry Smith         }
350385535b8eSBarry Smith 
350485535b8eSBarry Smith         if (in[j] >= cstart && in[j] < cend) {
350585535b8eSBarry Smith           col = in[j] - cstart;
35069566063dSJacob Faibussowitsch           PetscCall(MatSetValuesBlocked_SeqBAIJ_Inlined(baij->A, row, col, barray, addv, im[i], in[j]));
3507f7d195e4SLawrence Mitchell         } else if (in[j] < 0) {
3508f7d195e4SLawrence Mitchell           continue;
3509f7d195e4SLawrence Mitchell         } else {
3510f7d195e4SLawrence Mitchell           PetscCheck(in[j] < baij->Nbs, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large, col %" PetscInt_FMT " max %" PetscInt_FMT, in[j], baij->Nbs - 1);
351185535b8eSBarry Smith           if (mat->was_assembled) {
351248a46eb9SPierre Jolivet             if (!baij->colmap) PetscCall(MatCreateColmap_MPIBAIJ_Private(mat));
351385535b8eSBarry Smith 
351485535b8eSBarry Smith #if defined(PETSC_USE_DEBUG)
351585535b8eSBarry Smith   #if defined(PETSC_USE_CTABLE)
35169371c9d4SSatish Balay             {
35179371c9d4SSatish Balay               PetscInt data;
3518eec179cfSJacob Faibussowitsch               PetscCall(PetscHMapIGetWithDefault(baij->colmap, in[j] + 1, 0, &data));
351908401ef6SPierre Jolivet               PetscCheck((data - 1) % bs == 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Incorrect colmap");
352085535b8eSBarry Smith             }
352185535b8eSBarry Smith   #else
352208401ef6SPierre Jolivet             PetscCheck((baij->colmap[in[j]] - 1) % bs == 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Incorrect colmap");
352385535b8eSBarry Smith   #endif
352485535b8eSBarry Smith #endif
352585535b8eSBarry Smith #if defined(PETSC_USE_CTABLE)
3526eec179cfSJacob Faibussowitsch             PetscCall(PetscHMapIGetWithDefault(baij->colmap, in[j] + 1, 0, &col));
352785535b8eSBarry Smith             col = (col - 1) / bs;
352885535b8eSBarry Smith #else
352985535b8eSBarry Smith             col = (baij->colmap[in[j]] - 1) / bs;
353085535b8eSBarry Smith #endif
3531f4f49eeaSPierre Jolivet             if (col < 0 && !((Mat_SeqBAIJ *)baij->A->data)->nonew) {
35329566063dSJacob Faibussowitsch               PetscCall(MatDisAssemble_MPIBAIJ(mat));
353385535b8eSBarry Smith               col = in[j];
353485535b8eSBarry Smith             }
353526fbe8dcSKarl Rupp           } else col = in[j];
35369566063dSJacob Faibussowitsch           PetscCall(MatSetValuesBlocked_SeqBAIJ_Inlined(baij->B, row, col, barray, addv, im[i], in[j]));
353785535b8eSBarry Smith         }
353885535b8eSBarry Smith       }
353985535b8eSBarry Smith     } else {
354085535b8eSBarry Smith       if (!baij->donotstash) {
354185535b8eSBarry Smith         if (roworiented) {
35429566063dSJacob Faibussowitsch           PetscCall(MatStashValuesRowBlocked_Private(&mat->bstash, im[i], n, in, v, m, n, i));
354385535b8eSBarry Smith         } else {
35449566063dSJacob Faibussowitsch           PetscCall(MatStashValuesColBlocked_Private(&mat->bstash, im[i], n, in, v, m, n, i));
354585535b8eSBarry Smith         }
354685535b8eSBarry Smith       }
354785535b8eSBarry Smith     }
354885535b8eSBarry Smith   }
354985535b8eSBarry Smith 
355085535b8eSBarry Smith   /* task normally handled by MatSetValuesBlocked() */
35519566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(MAT_SetValues, mat, 0, 0, 0));
35523ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
355385535b8eSBarry Smith }
3554dfb205c3SBarry Smith 
3555dfb205c3SBarry Smith /*@
3556d8a51d2aSBarry Smith   MatCreateMPIBAIJWithArrays - creates a `MATMPIBAIJ` matrix using arrays that contain in standard block CSR format for the local rows.
3557dfb205c3SBarry Smith 
3558d083f849SBarry Smith   Collective
3559dfb205c3SBarry Smith 
3560dfb205c3SBarry Smith   Input Parameters:
3561dfb205c3SBarry Smith + comm - MPI communicator
3562dfb205c3SBarry Smith . bs   - the block size, only a block size of 1 is supported
356311a5261eSBarry Smith . m    - number of local rows (Cannot be `PETSC_DECIDE`)
3564dfb205c3SBarry Smith . n    - This value should be the same as the local size used in creating the
3565d8a51d2aSBarry Smith          x vector for the matrix-vector product $ y = Ax $. (or `PETSC_DECIDE` to have
3566d8a51d2aSBarry Smith          calculated if `N` is given) For square matrices `n` is almost always `m`.
3567d8a51d2aSBarry Smith . M    - number of global rows (or `PETSC_DETERMINE` to have calculated if `m` is given)
3568d8a51d2aSBarry Smith . N    - number of global columns (or `PETSC_DETERMINE` to have calculated if `n` is given)
3569483a2f95SBarry Smith . i    - row indices; that is i[0] = 0, i[row] = i[row-1] + number of block elements in that rowth block row of the matrix
3570dfb205c3SBarry Smith . j    - column indices
3571dfb205c3SBarry Smith - a    - matrix values
3572dfb205c3SBarry Smith 
3573dfb205c3SBarry Smith   Output Parameter:
3574dfb205c3SBarry Smith . mat - the matrix
3575dfb205c3SBarry Smith 
3576dfb205c3SBarry Smith   Level: intermediate
3577dfb205c3SBarry Smith 
3578dfb205c3SBarry Smith   Notes:
357967be906fSBarry Smith   The `i`, `j`, and `a` arrays ARE copied by this routine into the internal format used by PETSc;
3580dfb205c3SBarry Smith   thus you CANNOT change the matrix entries by changing the values of a[] after you have
358111a5261eSBarry Smith   called this routine. Use `MatCreateMPIAIJWithSplitArrays()` to avoid needing to copy the arrays.
3582dfb205c3SBarry Smith 
35833adadaf3SJed Brown   The order of the entries in values is the same as the block compressed sparse row storage format; that is, it is
35843adadaf3SJed Brown   the same as a three dimensional array in Fortran values(bs,bs,nnz) that contains the first column of the first
35853adadaf3SJed Brown   block, followed by the second column of the first block etc etc.  That is, the blocks are contiguous in memory
35863adadaf3SJed Brown   with column-major ordering within blocks.
35873adadaf3SJed Brown 
3588d8a51d2aSBarry Smith   The `i` and `j` indices are 0 based, and `i` indices are indices corresponding to the local `j` array.
3589dfb205c3SBarry Smith 
359067be906fSBarry Smith .seealso: `Mat`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`,
35917d2c085eSPierre Jolivet           `MATMPIAIJ`, `MatCreateAIJ()`, `MatCreateMPIAIJWithSplitArrays()`
3592dfb205c3SBarry Smith @*/
3593d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIBAIJWithArrays(MPI_Comm comm, PetscInt bs, PetscInt m, PetscInt n, PetscInt M, PetscInt N, const PetscInt i[], const PetscInt j[], const PetscScalar a[], Mat *mat)
3594d71ae5a4SJacob Faibussowitsch {
3595dfb205c3SBarry Smith   PetscFunctionBegin;
35965f80ce2aSJacob Faibussowitsch   PetscCheck(!i[0], PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "i (row indices) must start with 0");
35975f80ce2aSJacob Faibussowitsch   PetscCheck(m >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "local number of rows (m) cannot be PETSC_DECIDE, or negative");
35989566063dSJacob Faibussowitsch   PetscCall(MatCreate(comm, mat));
35999566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(*mat, m, n, M, N));
36009566063dSJacob Faibussowitsch   PetscCall(MatSetType(*mat, MATMPIBAIJ));
36019566063dSJacob Faibussowitsch   PetscCall(MatSetBlockSize(*mat, bs));
36029566063dSJacob Faibussowitsch   PetscCall(MatSetUp(*mat));
36039566063dSJacob Faibussowitsch   PetscCall(MatSetOption(*mat, MAT_ROW_ORIENTED, PETSC_FALSE));
36049566063dSJacob Faibussowitsch   PetscCall(MatMPIBAIJSetPreallocationCSR(*mat, bs, i, j, a));
36059566063dSJacob Faibussowitsch   PetscCall(MatSetOption(*mat, MAT_ROW_ORIENTED, PETSC_TRUE));
36063ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3607dfb205c3SBarry Smith }
3608e561ad89SHong Zhang 
3609d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIMatConcatenateSeqMat_MPIBAIJ(MPI_Comm comm, Mat inmat, PetscInt n, MatReuse scall, Mat *outmat)
3610d71ae5a4SJacob Faibussowitsch {
3611bd153df0SHong Zhang   PetscInt     m, N, i, rstart, nnz, Ii, bs, cbs;
3612bd153df0SHong Zhang   PetscInt    *indx;
3613bd153df0SHong Zhang   PetscScalar *values;
3614e561ad89SHong Zhang 
3615e561ad89SHong Zhang   PetscFunctionBegin;
36169566063dSJacob Faibussowitsch   PetscCall(MatGetSize(inmat, &m, &N));
3617bd153df0SHong Zhang   if (scall == MAT_INITIAL_MATRIX) { /* symbolic phase */
3618bd153df0SHong Zhang     Mat_SeqBAIJ *a = (Mat_SeqBAIJ *)inmat->data;
36192c6ba4edSHong Zhang     PetscInt    *dnz, *onz, mbs, Nbs, nbs;
3620bd153df0SHong Zhang     PetscInt    *bindx, rmax = a->rmax, j;
362177f764caSHong Zhang     PetscMPIInt  rank, size;
3622e561ad89SHong Zhang 
36239566063dSJacob Faibussowitsch     PetscCall(MatGetBlockSizes(inmat, &bs, &cbs));
36249371c9d4SSatish Balay     mbs = m / bs;
36259371c9d4SSatish Balay     Nbs = N / cbs;
362648a46eb9SPierre Jolivet     if (n == PETSC_DECIDE) PetscCall(PetscSplitOwnershipBlock(comm, cbs, &n, &N));
3627da91a574SPierre Jolivet     nbs = n / cbs;
3628e561ad89SHong Zhang 
36299566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(rmax, &bindx));
3630d0609cedSBarry Smith     MatPreallocateBegin(comm, mbs, nbs, dnz, onz); /* inline function, output __end and __rstart are used below */
363177f764caSHong Zhang 
36329566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Comm_rank(comm, &rank));
36339566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Comm_rank(comm, &size));
363477f764caSHong Zhang     if (rank == size - 1) {
363577f764caSHong Zhang       /* Check sum(nbs) = Nbs */
36365f80ce2aSJacob Faibussowitsch       PetscCheck(__end == Nbs, PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "Sum of local block columns %" PetscInt_FMT " != global block columns %" PetscInt_FMT, __end, Nbs);
363777f764caSHong Zhang     }
363877f764caSHong Zhang 
3639d0609cedSBarry Smith     rstart = __rstart; /* block rstart of *outmat; see inline function MatPreallocateBegin */
3640bd153df0SHong Zhang     for (i = 0; i < mbs; i++) {
36419566063dSJacob Faibussowitsch       PetscCall(MatGetRow_SeqBAIJ(inmat, i * bs, &nnz, &indx, NULL)); /* non-blocked nnz and indx */
3642647a6520SHong Zhang       nnz = nnz / bs;
3643647a6520SHong Zhang       for (j = 0; j < nnz; j++) bindx[j] = indx[j * bs] / bs;
36449566063dSJacob Faibussowitsch       PetscCall(MatPreallocateSet(i + rstart, nnz, bindx, dnz, onz));
36459566063dSJacob Faibussowitsch       PetscCall(MatRestoreRow_SeqBAIJ(inmat, i * bs, &nnz, &indx, NULL));
3646e561ad89SHong Zhang     }
36479566063dSJacob Faibussowitsch     PetscCall(PetscFree(bindx));
3648e561ad89SHong Zhang 
36499566063dSJacob Faibussowitsch     PetscCall(MatCreate(comm, outmat));
36509566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(*outmat, m, n, PETSC_DETERMINE, PETSC_DETERMINE));
36519566063dSJacob Faibussowitsch     PetscCall(MatSetBlockSizes(*outmat, bs, cbs));
36529566063dSJacob Faibussowitsch     PetscCall(MatSetType(*outmat, MATBAIJ));
36539566063dSJacob Faibussowitsch     PetscCall(MatSeqBAIJSetPreallocation(*outmat, bs, 0, dnz));
36549566063dSJacob Faibussowitsch     PetscCall(MatMPIBAIJSetPreallocation(*outmat, bs, 0, dnz, 0, onz));
3655d0609cedSBarry Smith     MatPreallocateEnd(dnz, onz);
36569566063dSJacob Faibussowitsch     PetscCall(MatSetOption(*outmat, MAT_NO_OFF_PROC_ENTRIES, PETSC_TRUE));
3657e561ad89SHong Zhang   }
3658e561ad89SHong Zhang 
3659bd153df0SHong Zhang   /* numeric phase */
36609566063dSJacob Faibussowitsch   PetscCall(MatGetBlockSizes(inmat, &bs, &cbs));
36619566063dSJacob Faibussowitsch   PetscCall(MatGetOwnershipRange(*outmat, &rstart, NULL));
3662e561ad89SHong Zhang 
3663e561ad89SHong Zhang   for (i = 0; i < m; i++) {
36649566063dSJacob Faibussowitsch     PetscCall(MatGetRow_SeqBAIJ(inmat, i, &nnz, &indx, &values));
3665e561ad89SHong Zhang     Ii = i + rstart;
36669566063dSJacob Faibussowitsch     PetscCall(MatSetValues(*outmat, 1, &Ii, nnz, indx, values, INSERT_VALUES));
36679566063dSJacob Faibussowitsch     PetscCall(MatRestoreRow_SeqBAIJ(inmat, i, &nnz, &indx, &values));
3668e561ad89SHong Zhang   }
36699566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(*outmat, MAT_FINAL_ASSEMBLY));
36709566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(*outmat, MAT_FINAL_ASSEMBLY));
36713ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3672e561ad89SHong Zhang }
3673