1c6db04a5SJed Brown #include <../src/mat/impls/baij/mpi/mpibaij.h> /*I "petscmat.h" I*/ 2c5d9258eSSatish Balay 3b51a4376SLisandro Dalcin #include <petsc/private/hashseti.h> 4c6db04a5SJed Brown #include <petscblaslapack.h> 565a92638SMatthew G. Knepley #include <petscsf.h> 679bdfe76SSatish Balay 766976f2fSJacob Faibussowitsch static PetscErrorCode MatDestroy_MPIBAIJ(Mat mat) 826cec326SBarry Smith { 926cec326SBarry Smith Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 1026cec326SBarry Smith 1126cec326SBarry Smith PetscFunctionBegin; 1226cec326SBarry Smith PetscCall(PetscLogObjectState((PetscObject)mat, "Rows=%" PetscInt_FMT ",Cols=%" PetscInt_FMT, mat->rmap->N, mat->cmap->N)); 1326cec326SBarry Smith PetscCall(MatStashDestroy_Private(&mat->stash)); 1426cec326SBarry Smith PetscCall(MatStashDestroy_Private(&mat->bstash)); 1526cec326SBarry Smith PetscCall(MatDestroy(&baij->A)); 1626cec326SBarry Smith PetscCall(MatDestroy(&baij->B)); 1726cec326SBarry Smith #if defined(PETSC_USE_CTABLE) 1826cec326SBarry Smith PetscCall(PetscHMapIDestroy(&baij->colmap)); 1926cec326SBarry Smith #else 2026cec326SBarry Smith PetscCall(PetscFree(baij->colmap)); 2126cec326SBarry Smith #endif 2226cec326SBarry Smith PetscCall(PetscFree(baij->garray)); 2326cec326SBarry Smith PetscCall(VecDestroy(&baij->lvec)); 2426cec326SBarry Smith PetscCall(VecScatterDestroy(&baij->Mvctx)); 2526cec326SBarry Smith PetscCall(PetscFree2(baij->rowvalues, baij->rowindices)); 2626cec326SBarry Smith PetscCall(PetscFree(baij->barray)); 2726cec326SBarry Smith PetscCall(PetscFree2(baij->hd, baij->ht)); 2826cec326SBarry Smith PetscCall(PetscFree(baij->rangebs)); 2926cec326SBarry Smith PetscCall(PetscFree(mat->data)); 3026cec326SBarry Smith 3126cec326SBarry Smith PetscCall(PetscObjectChangeTypeName((PetscObject)mat, NULL)); 3226cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatStoreValues_C", NULL)); 3326cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatRetrieveValues_C", NULL)); 3426cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMPIBAIJSetPreallocation_C", NULL)); 3526cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMPIBAIJSetPreallocationCSR_C", NULL)); 3626cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDiagonalScaleLocal_C", NULL)); 3726cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatSetHashTableFactor_C", NULL)); 3826cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpibaij_mpisbaij_C", NULL)); 3926cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpibaij_mpiadj_C", NULL)); 4026cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpibaij_mpiaij_C", NULL)); 4126cec326SBarry Smith #if defined(PETSC_HAVE_HYPRE) 4226cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpibaij_hypre_C", NULL)); 4326cec326SBarry Smith #endif 4426cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpibaij_is_C", NULL)); 4526cec326SBarry Smith PetscFunctionReturn(PETSC_SUCCESS); 4626cec326SBarry Smith } 4726cec326SBarry Smith 4826cec326SBarry Smith /* defines MatSetValues_MPI_Hash(), MatAssemblyBegin_MPI_Hash(), and MatAssemblyEnd_MPI_Hash() */ 4926cec326SBarry Smith #define TYPE BAIJ 5026cec326SBarry Smith #include "../src/mat/impls/aij/mpi/mpihashmat.h" 5126cec326SBarry Smith #undef TYPE 5226cec326SBarry Smith 537ea3e4caSstefano_zampini #if defined(PETSC_HAVE_HYPRE) 547ea3e4caSstefano_zampini PETSC_INTERN PetscErrorCode MatConvert_AIJ_HYPRE(Mat, MatType, MatReuse, Mat *); 557ea3e4caSstefano_zampini #endif 567ea3e4caSstefano_zampini 5766976f2fSJacob Faibussowitsch static PetscErrorCode MatGetRowMaxAbs_MPIBAIJ(Mat A, Vec v, PetscInt idx[]) 58d71ae5a4SJacob Faibussowitsch { 597843d17aSBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 604e879edeSHong Zhang PetscInt i, *idxb = NULL, m = A->rmap->n, bs = A->cmap->bs; 61db161fc6SPierre Jolivet PetscScalar *vv; 624e879edeSHong Zhang Vec vB, vA; 63db161fc6SPierre Jolivet const PetscScalar *va, *vb; 647843d17aSBarry Smith 657843d17aSBarry Smith PetscFunctionBegin; 66c7b600bfSPierre Jolivet PetscCall(MatCreateVecs(a->A, NULL, &vA)); 679566063dSJacob Faibussowitsch PetscCall(MatGetRowMaxAbs(a->A, vA, idx)); 684e879edeSHong Zhang 69db161fc6SPierre Jolivet PetscCall(VecGetArrayRead(vA, &va)); 70985db425SBarry Smith if (idx) { 714e879edeSHong Zhang for (i = 0; i < m; i++) { 7226fbe8dcSKarl Rupp if (PetscAbsScalar(va[i])) idx[i] += A->cmap->rstart; 7326fbe8dcSKarl Rupp } 74985db425SBarry Smith } 757843d17aSBarry Smith 76c7b600bfSPierre Jolivet PetscCall(MatCreateVecs(a->B, NULL, &vB)); 779566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m, &idxb)); 789566063dSJacob Faibussowitsch PetscCall(MatGetRowMaxAbs(a->B, vB, idxb)); 797843d17aSBarry Smith 809566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(v, &vv)); 819566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(vB, &vb)); 824e879edeSHong Zhang for (i = 0; i < m; i++) { 8326fbe8dcSKarl Rupp if (PetscAbsScalar(va[i]) < PetscAbsScalar(vb[i])) { 844e879edeSHong Zhang vv[i] = vb[i]; 854e879edeSHong Zhang if (idx) idx[i] = bs * a->garray[idxb[i] / bs] + (idxb[i] % bs); 864e879edeSHong Zhang } else { 874e879edeSHong Zhang vv[i] = va[i]; 889371c9d4SSatish Balay if (idx && PetscAbsScalar(va[i]) == PetscAbsScalar(vb[i]) && idxb[i] != -1 && idx[i] > bs * a->garray[idxb[i] / bs] + (idxb[i] % bs)) idx[i] = bs * a->garray[idxb[i] / bs] + (idxb[i] % bs); 8926fbe8dcSKarl Rupp } 907843d17aSBarry Smith } 91db161fc6SPierre Jolivet PetscCall(VecRestoreArrayWrite(v, &vv)); 92db161fc6SPierre Jolivet PetscCall(VecRestoreArrayRead(vA, &va)); 939566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(vB, &vb)); 949566063dSJacob Faibussowitsch PetscCall(PetscFree(idxb)); 959566063dSJacob Faibussowitsch PetscCall(VecDestroy(&vA)); 969566063dSJacob Faibussowitsch PetscCall(VecDestroy(&vB)); 973ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 987843d17aSBarry Smith } 997843d17aSBarry Smith 100c7b600bfSPierre Jolivet static PetscErrorCode MatGetRowSumAbs_MPIBAIJ(Mat A, Vec v) 101c7b600bfSPierre Jolivet { 102c7b600bfSPierre Jolivet Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 103c7b600bfSPierre Jolivet Vec vB, vA; 104c7b600bfSPierre Jolivet 105c7b600bfSPierre Jolivet PetscFunctionBegin; 106c7b600bfSPierre Jolivet PetscCall(MatCreateVecs(a->A, NULL, &vA)); 107c7b600bfSPierre Jolivet PetscCall(MatGetRowSumAbs(a->A, vA)); 108c7b600bfSPierre Jolivet PetscCall(MatCreateVecs(a->B, NULL, &vB)); 109c7b600bfSPierre Jolivet PetscCall(MatGetRowSumAbs(a->B, vB)); 110c7b600bfSPierre Jolivet PetscCall(VecAXPY(vA, 1.0, vB)); 111c7b600bfSPierre Jolivet PetscCall(VecDestroy(&vB)); 112c7b600bfSPierre Jolivet PetscCall(VecCopy(vA, v)); 113c7b600bfSPierre Jolivet PetscCall(VecDestroy(&vA)); 114c7b600bfSPierre Jolivet PetscFunctionReturn(PETSC_SUCCESS); 115c7b600bfSPierre Jolivet } 116c7b600bfSPierre Jolivet 11766976f2fSJacob Faibussowitsch static PetscErrorCode MatStoreValues_MPIBAIJ(Mat mat) 118d71ae5a4SJacob Faibussowitsch { 1197fc3c18eSBarry Smith Mat_MPIBAIJ *aij = (Mat_MPIBAIJ *)mat->data; 1207fc3c18eSBarry Smith 1217fc3c18eSBarry Smith PetscFunctionBegin; 1229566063dSJacob Faibussowitsch PetscCall(MatStoreValues(aij->A)); 1239566063dSJacob Faibussowitsch PetscCall(MatStoreValues(aij->B)); 1243ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1257fc3c18eSBarry Smith } 1267fc3c18eSBarry Smith 12766976f2fSJacob Faibussowitsch static PetscErrorCode MatRetrieveValues_MPIBAIJ(Mat mat) 128d71ae5a4SJacob Faibussowitsch { 1297fc3c18eSBarry Smith Mat_MPIBAIJ *aij = (Mat_MPIBAIJ *)mat->data; 1307fc3c18eSBarry Smith 1317fc3c18eSBarry Smith PetscFunctionBegin; 1329566063dSJacob Faibussowitsch PetscCall(MatRetrieveValues(aij->A)); 1339566063dSJacob Faibussowitsch PetscCall(MatRetrieveValues(aij->B)); 1343ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1357fc3c18eSBarry Smith } 1367fc3c18eSBarry Smith 137537820f0SBarry Smith /* 138537820f0SBarry Smith Local utility routine that creates a mapping from the global column 13957b952d6SSatish Balay number to the local number in the off-diagonal part of the local 140e06f6af7SJed Brown storage of the matrix. This is done in a non scalable way since the 14157b952d6SSatish Balay length of colmap equals the global matrix length. 14257b952d6SSatish Balay */ 143d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateColmap_MPIBAIJ_Private(Mat mat) 144d71ae5a4SJacob Faibussowitsch { 14557b952d6SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 14657b952d6SSatish Balay Mat_SeqBAIJ *B = (Mat_SeqBAIJ *)baij->B->data; 147d0f46423SBarry Smith PetscInt nbs = B->nbs, i, bs = mat->rmap->bs; 14857b952d6SSatish Balay 149d64ed03dSBarry Smith PetscFunctionBegin; 150aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 151eec179cfSJacob Faibussowitsch PetscCall(PetscHMapICreateWithSize(baij->nbs, &baij->colmap)); 152c76ffc5fSJacob Faibussowitsch for (i = 0; i < nbs; i++) PetscCall(PetscHMapISet(baij->colmap, baij->garray[i] + 1, i * bs + 1)); 15348e59246SSatish Balay #else 1549566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(baij->Nbs + 1, &baij->colmap)); 155928fc39bSSatish Balay for (i = 0; i < nbs; i++) baij->colmap[baij->garray[i]] = i * bs + 1; 15648e59246SSatish Balay #endif 1573ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 15857b952d6SSatish Balay } 15957b952d6SSatish Balay 160d40312a9SBarry Smith #define MatSetValues_SeqBAIJ_A_Private(row, col, value, addv, orow, ocol) \ 161a8f51744SPierre Jolivet do { \ 16280c1aa95SSatish Balay brow = row / bs; \ 1638e3a54c0SPierre Jolivet rp = PetscSafePointerPlusOffset(aj, ai[brow]); \ 1648e3a54c0SPierre Jolivet ap = PetscSafePointerPlusOffset(aa, bs2 * ai[brow]); \ 1659371c9d4SSatish Balay rmax = aimax[brow]; \ 1669371c9d4SSatish Balay nrow = ailen[brow]; \ 16780c1aa95SSatish Balay bcol = col / bs; \ 1689371c9d4SSatish Balay ridx = row % bs; \ 1699371c9d4SSatish Balay cidx = col % bs; \ 1709371c9d4SSatish Balay low = 0; \ 1719371c9d4SSatish Balay high = nrow; \ 172ab26458aSBarry Smith while (high - low > 3) { \ 173ab26458aSBarry Smith t = (low + high) / 2; \ 174ab26458aSBarry Smith if (rp[t] > bcol) high = t; \ 175ab26458aSBarry Smith else low = t; \ 176ab26458aSBarry Smith } \ 177ab26458aSBarry Smith for (_i = low; _i < high; _i++) { \ 17880c1aa95SSatish Balay if (rp[_i] > bcol) break; \ 17980c1aa95SSatish Balay if (rp[_i] == bcol) { \ 18080c1aa95SSatish Balay bap = ap + bs2 * _i + bs * cidx + ridx; \ 181eada6651SSatish Balay if (addv == ADD_VALUES) *bap += value; \ 182eada6651SSatish Balay else *bap = value; \ 183ac7a638eSSatish Balay goto a_noinsert; \ 18480c1aa95SSatish Balay } \ 18580c1aa95SSatish Balay } \ 18689280ab3SLois Curfman McInnes if (a->nonew == 1) goto a_noinsert; \ 1875f80ce2aSJacob Faibussowitsch PetscCheck(a->nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", orow, ocol); \ 188fef13f97SBarry Smith MatSeqXAIJReallocateAIJ(A, a->mbs, bs2, nrow, brow, bcol, rmax, aa, ai, aj, rp, ap, aimax, a->nonew, MatScalar); \ 18980c1aa95SSatish Balay N = nrow++ - 1; \ 19080c1aa95SSatish Balay /* shift up all the later entries in this row */ \ 1919566063dSJacob Faibussowitsch PetscCall(PetscArraymove(rp + _i + 1, rp + _i, N - _i + 1)); \ 1929566063dSJacob Faibussowitsch PetscCall(PetscArraymove(ap + bs2 * (_i + 1), ap + bs2 * _i, bs2 * (N - _i + 1))); \ 1939566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(ap + bs2 * _i, bs2)); \ 19480c1aa95SSatish Balay rp[_i] = bcol; \ 19580c1aa95SSatish Balay ap[bs2 * _i + bs * cidx + ridx] = value; \ 196ac7a638eSSatish Balay a_noinsert:; \ 19780c1aa95SSatish Balay ailen[brow] = nrow; \ 198a8f51744SPierre Jolivet } while (0) 19957b952d6SSatish Balay 200d40312a9SBarry Smith #define MatSetValues_SeqBAIJ_B_Private(row, col, value, addv, orow, ocol) \ 201a8f51744SPierre Jolivet do { \ 202ac7a638eSSatish Balay brow = row / bs; \ 2038e3a54c0SPierre Jolivet rp = PetscSafePointerPlusOffset(bj, bi[brow]); \ 2048e3a54c0SPierre Jolivet ap = PetscSafePointerPlusOffset(ba, bs2 * bi[brow]); \ 2059371c9d4SSatish Balay rmax = bimax[brow]; \ 2069371c9d4SSatish Balay nrow = bilen[brow]; \ 207ac7a638eSSatish Balay bcol = col / bs; \ 2089371c9d4SSatish Balay ridx = row % bs; \ 2099371c9d4SSatish Balay cidx = col % bs; \ 2109371c9d4SSatish Balay low = 0; \ 2119371c9d4SSatish Balay high = nrow; \ 212ac7a638eSSatish Balay while (high - low > 3) { \ 213ac7a638eSSatish Balay t = (low + high) / 2; \ 214ac7a638eSSatish Balay if (rp[t] > bcol) high = t; \ 215ac7a638eSSatish Balay else low = t; \ 216ac7a638eSSatish Balay } \ 217ac7a638eSSatish Balay for (_i = low; _i < high; _i++) { \ 218ac7a638eSSatish Balay if (rp[_i] > bcol) break; \ 219ac7a638eSSatish Balay if (rp[_i] == bcol) { \ 220ac7a638eSSatish Balay bap = ap + bs2 * _i + bs * cidx + ridx; \ 221ac7a638eSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 222ac7a638eSSatish Balay else *bap = value; \ 223ac7a638eSSatish Balay goto b_noinsert; \ 224ac7a638eSSatish Balay } \ 225ac7a638eSSatish Balay } \ 22689280ab3SLois Curfman McInnes if (b->nonew == 1) goto b_noinsert; \ 2275f80ce2aSJacob Faibussowitsch PetscCheck(b->nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", orow, ocol); \ 228fef13f97SBarry Smith MatSeqXAIJReallocateAIJ(B, b->mbs, bs2, nrow, brow, bcol, rmax, ba, bi, bj, rp, ap, bimax, b->nonew, MatScalar); \ 229ac7a638eSSatish Balay N = nrow++ - 1; \ 230ac7a638eSSatish Balay /* shift up all the later entries in this row */ \ 2319566063dSJacob Faibussowitsch PetscCall(PetscArraymove(rp + _i + 1, rp + _i, N - _i + 1)); \ 2329566063dSJacob Faibussowitsch PetscCall(PetscArraymove(ap + bs2 * (_i + 1), ap + bs2 * _i, bs2 * (N - _i + 1))); \ 2339566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(ap + bs2 * _i, bs2)); \ 234ac7a638eSSatish Balay rp[_i] = bcol; \ 235ac7a638eSSatish Balay ap[bs2 * _i + bs * cidx + ridx] = value; \ 236ac7a638eSSatish Balay b_noinsert:; \ 237ac7a638eSSatish Balay bilen[brow] = nrow; \ 238a8f51744SPierre Jolivet } while (0) 239ac7a638eSSatish Balay 240d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetValues_MPIBAIJ(Mat mat, PetscInt m, const PetscInt im[], PetscInt n, const PetscInt in[], const PetscScalar v[], InsertMode addv) 241d71ae5a4SJacob Faibussowitsch { 24257b952d6SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 24393fea6afSBarry Smith MatScalar value; 244ace3abfcSBarry Smith PetscBool roworiented = baij->roworiented; 245b24ad042SBarry Smith PetscInt i, j, row, col; 246d0f46423SBarry Smith PetscInt rstart_orig = mat->rmap->rstart; 247d0f46423SBarry Smith PetscInt rend_orig = mat->rmap->rend, cstart_orig = mat->cmap->rstart; 248d0f46423SBarry Smith PetscInt cend_orig = mat->cmap->rend, bs = mat->rmap->bs; 24957b952d6SSatish Balay 250eada6651SSatish Balay /* Some Variables required in the macro */ 25180c1aa95SSatish Balay Mat A = baij->A; 25257508eceSPierre Jolivet Mat_SeqBAIJ *a = (Mat_SeqBAIJ *)A->data; 253b24ad042SBarry Smith PetscInt *aimax = a->imax, *ai = a->i, *ailen = a->ilen, *aj = a->j; 2543eda8832SBarry Smith MatScalar *aa = a->a; 255ac7a638eSSatish Balay 256ac7a638eSSatish Balay Mat B = baij->B; 25757508eceSPierre Jolivet Mat_SeqBAIJ *b = (Mat_SeqBAIJ *)B->data; 258b24ad042SBarry Smith PetscInt *bimax = b->imax, *bi = b->i, *bilen = b->ilen, *bj = b->j; 2593eda8832SBarry Smith MatScalar *ba = b->a; 260ac7a638eSSatish Balay 261b24ad042SBarry Smith PetscInt *rp, ii, nrow, _i, rmax, N, brow, bcol; 262b24ad042SBarry Smith PetscInt low, high, t, ridx, cidx, bs2 = a->bs2; 2633eda8832SBarry Smith MatScalar *ap, *bap; 26480c1aa95SSatish Balay 265d64ed03dSBarry Smith PetscFunctionBegin; 26657b952d6SSatish Balay for (i = 0; i < m; i++) { 2675ef9f2a5SBarry Smith if (im[i] < 0) continue; 2685f80ce2aSJacob Faibussowitsch PetscCheck(im[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, im[i], mat->rmap->N - 1); 26957b952d6SSatish Balay if (im[i] >= rstart_orig && im[i] < rend_orig) { 27057b952d6SSatish Balay row = im[i] - rstart_orig; 27157b952d6SSatish Balay for (j = 0; j < n; j++) { 27257b952d6SSatish Balay if (in[j] >= cstart_orig && in[j] < cend_orig) { 27357b952d6SSatish Balay col = in[j] - cstart_orig; 274db4deed7SKarl Rupp if (roworiented) value = v[i * n + j]; 275db4deed7SKarl Rupp else value = v[i + j * m]; 276d40312a9SBarry Smith MatSetValues_SeqBAIJ_A_Private(row, col, value, addv, im[i], in[j]); 277f7d195e4SLawrence Mitchell } else if (in[j] < 0) { 278f7d195e4SLawrence Mitchell continue; 279f7d195e4SLawrence Mitchell } else { 280f7d195e4SLawrence Mitchell PetscCheck(in[j] < mat->cmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, in[j], mat->cmap->N - 1); 28157b952d6SSatish Balay if (mat->was_assembled) { 28248a46eb9SPierre Jolivet if (!baij->colmap) PetscCall(MatCreateColmap_MPIBAIJ_Private(mat)); 283aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 284eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIGetWithDefault(baij->colmap, in[j] / bs + 1, 0, &col)); 285bba1ac68SSatish Balay col = col - 1; 28648e59246SSatish Balay #else 287bba1ac68SSatish Balay col = baij->colmap[in[j] / bs] - 1; 28848e59246SSatish Balay #endif 289f4f49eeaSPierre Jolivet if (col < 0 && !((Mat_SeqBAIJ *)baij->B->data)->nonew) { 2909566063dSJacob Faibussowitsch PetscCall(MatDisAssemble_MPIBAIJ(mat)); 2918295de27SSatish Balay col = in[j]; 2929bf004c3SSatish Balay /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */ 2939bf004c3SSatish Balay B = baij->B; 29457508eceSPierre Jolivet b = (Mat_SeqBAIJ *)B->data; 2959371c9d4SSatish Balay bimax = b->imax; 2969371c9d4SSatish Balay bi = b->i; 2979371c9d4SSatish Balay bilen = b->ilen; 2989371c9d4SSatish Balay bj = b->j; 2999bf004c3SSatish Balay ba = b->a; 300f7d195e4SLawrence Mitchell } else { 301f7d195e4SLawrence Mitchell PetscCheck(col >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", im[i], in[j]); 302f7d195e4SLawrence Mitchell col += in[j] % bs; 303f7d195e4SLawrence Mitchell } 3048295de27SSatish Balay } else col = in[j]; 305db4deed7SKarl Rupp if (roworiented) value = v[i * n + j]; 306db4deed7SKarl Rupp else value = v[i + j * m]; 307d40312a9SBarry Smith MatSetValues_SeqBAIJ_B_Private(row, col, value, addv, im[i], in[j]); 3089566063dSJacob Faibussowitsch /* PetscCall(MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv)); */ 30957b952d6SSatish Balay } 31057b952d6SSatish Balay } 311d64ed03dSBarry Smith } else { 3125f80ce2aSJacob Faibussowitsch PetscCheck(!mat->nooffprocentries, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Setting off process row %" PetscInt_FMT " even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set", im[i]); 31390f02eecSBarry Smith if (!baij->donotstash) { 3145080c13bSMatthew G Knepley mat->assembled = PETSC_FALSE; 315ff2fd236SBarry Smith if (roworiented) { 3169566063dSJacob Faibussowitsch PetscCall(MatStashValuesRow_Private(&mat->stash, im[i], n, in, v + i * n, PETSC_FALSE)); 317ff2fd236SBarry Smith } else { 3189566063dSJacob Faibussowitsch PetscCall(MatStashValuesCol_Private(&mat->stash, im[i], n, in, v + i, m, PETSC_FALSE)); 31957b952d6SSatish Balay } 32057b952d6SSatish Balay } 32157b952d6SSatish Balay } 32290f02eecSBarry Smith } 3233ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 32457b952d6SSatish Balay } 32557b952d6SSatish Balay 326d71ae5a4SJacob Faibussowitsch static inline PetscErrorCode MatSetValuesBlocked_SeqBAIJ_Inlined(Mat A, PetscInt row, PetscInt col, const PetscScalar v[], InsertMode is, PetscInt orow, PetscInt ocol) 327d71ae5a4SJacob Faibussowitsch { 328880c6e6aSBarry Smith Mat_SeqBAIJ *a = (Mat_SeqBAIJ *)A->data; 3298ab52850SBarry Smith PetscInt *rp, low, high, t, ii, jj, nrow, i, rmax, N; 330880c6e6aSBarry Smith PetscInt *imax = a->imax, *ai = a->i, *ailen = a->ilen; 3318ab52850SBarry Smith PetscInt *aj = a->j, nonew = a->nonew, bs2 = a->bs2, bs = A->rmap->bs; 332880c6e6aSBarry Smith PetscBool roworiented = a->roworiented; 333880c6e6aSBarry Smith const PetscScalar *value = v; 334880c6e6aSBarry Smith MatScalar *ap, *aa = a->a, *bap; 335880c6e6aSBarry Smith 336880c6e6aSBarry Smith PetscFunctionBegin; 337880c6e6aSBarry Smith rp = aj + ai[row]; 338880c6e6aSBarry Smith ap = aa + bs2 * ai[row]; 339880c6e6aSBarry Smith rmax = imax[row]; 340880c6e6aSBarry Smith nrow = ailen[row]; 3418ab52850SBarry Smith value = v; 3428ab52850SBarry Smith low = 0; 3438ab52850SBarry Smith high = nrow; 344880c6e6aSBarry Smith while (high - low > 7) { 345880c6e6aSBarry Smith t = (low + high) / 2; 346880c6e6aSBarry Smith if (rp[t] > col) high = t; 347880c6e6aSBarry Smith else low = t; 348880c6e6aSBarry Smith } 349880c6e6aSBarry Smith for (i = low; i < high; i++) { 350880c6e6aSBarry Smith if (rp[i] > col) break; 351880c6e6aSBarry Smith if (rp[i] == col) { 352880c6e6aSBarry Smith bap = ap + bs2 * i; 353880c6e6aSBarry Smith if (roworiented) { 354880c6e6aSBarry Smith if (is == ADD_VALUES) { 3558ab52850SBarry Smith for (ii = 0; ii < bs; ii++) { 356ad540459SPierre Jolivet for (jj = ii; jj < bs2; jj += bs) bap[jj] += *value++; 357880c6e6aSBarry Smith } 358880c6e6aSBarry Smith } else { 3598ab52850SBarry Smith for (ii = 0; ii < bs; ii++) { 360ad540459SPierre Jolivet for (jj = ii; jj < bs2; jj += bs) bap[jj] = *value++; 361880c6e6aSBarry Smith } 362880c6e6aSBarry Smith } 363880c6e6aSBarry Smith } else { 364880c6e6aSBarry Smith if (is == ADD_VALUES) { 3658ab52850SBarry Smith for (ii = 0; ii < bs; ii++, value += bs) { 366ad540459SPierre Jolivet for (jj = 0; jj < bs; jj++) bap[jj] += value[jj]; 367880c6e6aSBarry Smith bap += bs; 368880c6e6aSBarry Smith } 369880c6e6aSBarry Smith } else { 3708ab52850SBarry Smith for (ii = 0; ii < bs; ii++, value += bs) { 371ad540459SPierre Jolivet for (jj = 0; jj < bs; jj++) bap[jj] = value[jj]; 372880c6e6aSBarry Smith bap += bs; 373880c6e6aSBarry Smith } 374880c6e6aSBarry Smith } 375880c6e6aSBarry Smith } 376880c6e6aSBarry Smith goto noinsert2; 377880c6e6aSBarry Smith } 378880c6e6aSBarry Smith } 379880c6e6aSBarry Smith if (nonew == 1) goto noinsert2; 3805f80ce2aSJacob Faibussowitsch PetscCheck(nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new global block indexed nonzero block (%" PetscInt_FMT ", %" PetscInt_FMT ") in the matrix", orow, ocol); 381880c6e6aSBarry Smith MatSeqXAIJReallocateAIJ(A, a->mbs, bs2, nrow, row, col, rmax, aa, ai, aj, rp, ap, imax, nonew, MatScalar); 3829371c9d4SSatish Balay N = nrow++ - 1; 3839371c9d4SSatish Balay high++; 384880c6e6aSBarry Smith /* shift up all the later entries in this row */ 3859566063dSJacob Faibussowitsch PetscCall(PetscArraymove(rp + i + 1, rp + i, N - i + 1)); 3869566063dSJacob Faibussowitsch PetscCall(PetscArraymove(ap + bs2 * (i + 1), ap + bs2 * i, bs2 * (N - i + 1))); 387880c6e6aSBarry Smith rp[i] = col; 388880c6e6aSBarry Smith bap = ap + bs2 * i; 389880c6e6aSBarry Smith if (roworiented) { 3908ab52850SBarry Smith for (ii = 0; ii < bs; ii++) { 391ad540459SPierre Jolivet for (jj = ii; jj < bs2; jj += bs) bap[jj] = *value++; 392880c6e6aSBarry Smith } 393880c6e6aSBarry Smith } else { 3948ab52850SBarry Smith for (ii = 0; ii < bs; ii++) { 395ad540459SPierre Jolivet for (jj = 0; jj < bs; jj++) *bap++ = *value++; 396880c6e6aSBarry Smith } 397880c6e6aSBarry Smith } 398880c6e6aSBarry Smith noinsert2:; 399880c6e6aSBarry Smith ailen[row] = nrow; 4003ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 401880c6e6aSBarry Smith } 402880c6e6aSBarry Smith 4038ab52850SBarry Smith /* 4048ab52850SBarry Smith This routine should be optimized so that the block copy at ** Here a copy is required ** below is not needed 4058ab52850SBarry Smith by passing additional stride information into the MatSetValuesBlocked_SeqBAIJ_Inlined() routine 4068ab52850SBarry Smith */ 40766976f2fSJacob Faibussowitsch static PetscErrorCode MatSetValuesBlocked_MPIBAIJ(Mat mat, PetscInt m, const PetscInt im[], PetscInt n, const PetscInt in[], const PetscScalar v[], InsertMode addv) 408d71ae5a4SJacob Faibussowitsch { 409ab26458aSBarry Smith Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 410dd6ea824SBarry Smith const PetscScalar *value; 411f15d580aSBarry Smith MatScalar *barray = baij->barray; 412ace3abfcSBarry Smith PetscBool roworiented = baij->roworiented; 413899cda47SBarry Smith PetscInt i, j, ii, jj, row, col, rstart = baij->rstartbs; 414899cda47SBarry Smith PetscInt rend = baij->rendbs, cstart = baij->cstartbs, stepval; 415d0f46423SBarry Smith PetscInt cend = baij->cendbs, bs = mat->rmap->bs, bs2 = baij->bs2; 416ab26458aSBarry Smith 417b16ae2b1SBarry Smith PetscFunctionBegin; 41830793edcSSatish Balay if (!barray) { 4199566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(bs2, &barray)); 42082502324SSatish Balay baij->barray = barray; 42130793edcSSatish Balay } 42230793edcSSatish Balay 42326fbe8dcSKarl Rupp if (roworiented) stepval = (n - 1) * bs; 42426fbe8dcSKarl Rupp else stepval = (m - 1) * bs; 42526fbe8dcSKarl Rupp 426ab26458aSBarry Smith for (i = 0; i < m; i++) { 4275ef9f2a5SBarry Smith if (im[i] < 0) continue; 4286bdcaf15SBarry Smith PetscCheck(im[i] < baij->Mbs, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Block indexed row too large %" PetscInt_FMT " max %" PetscInt_FMT, im[i], baij->Mbs - 1); 429ab26458aSBarry Smith if (im[i] >= rstart && im[i] < rend) { 430ab26458aSBarry Smith row = im[i] - rstart; 431ab26458aSBarry Smith for (j = 0; j < n; j++) { 43215b57d14SSatish Balay /* If NumCol = 1 then a copy is not required */ 43315b57d14SSatish Balay if ((roworiented) && (n == 1)) { 434f15d580aSBarry Smith barray = (MatScalar *)v + i * bs2; 43515b57d14SSatish Balay } else if ((!roworiented) && (m == 1)) { 436f15d580aSBarry Smith barray = (MatScalar *)v + j * bs2; 43715b57d14SSatish Balay } else { /* Here a copy is required */ 438ab26458aSBarry Smith if (roworiented) { 43953ef36baSBarry Smith value = v + (i * (stepval + bs) + j) * bs; 440ab26458aSBarry Smith } else { 44153ef36baSBarry Smith value = v + (j * (stepval + bs) + i) * bs; 442abef11f7SSatish Balay } 44353ef36baSBarry Smith for (ii = 0; ii < bs; ii++, value += bs + stepval) { 44426fbe8dcSKarl Rupp for (jj = 0; jj < bs; jj++) barray[jj] = value[jj]; 44553ef36baSBarry Smith barray += bs; 44647513183SBarry Smith } 44730793edcSSatish Balay barray -= bs2; 44815b57d14SSatish Balay } 449abef11f7SSatish Balay 450abef11f7SSatish Balay if (in[j] >= cstart && in[j] < cend) { 451abef11f7SSatish Balay col = in[j] - cstart; 4529566063dSJacob Faibussowitsch PetscCall(MatSetValuesBlocked_SeqBAIJ_Inlined(baij->A, row, col, barray, addv, im[i], in[j])); 453f7d195e4SLawrence Mitchell } else if (in[j] < 0) { 454f7d195e4SLawrence Mitchell continue; 455f7d195e4SLawrence Mitchell } else { 456f7d195e4SLawrence Mitchell PetscCheck(in[j] < baij->Nbs, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Block indexed column too large %" PetscInt_FMT " max %" PetscInt_FMT, in[j], baij->Nbs - 1); 457ab26458aSBarry Smith if (mat->was_assembled) { 45848a46eb9SPierre Jolivet if (!baij->colmap) PetscCall(MatCreateColmap_MPIBAIJ_Private(mat)); 459a5eb4965SSatish Balay 460aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 461eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIGetWithDefault(baij->colmap, in[j] + 1, 0, &col)); 462b758ae8cSBarry Smith col = col < 1 ? -1 : (col - 1) / bs; 46348e59246SSatish Balay #else 464b758ae8cSBarry Smith col = baij->colmap[in[j]] < 1 ? -1 : (baij->colmap[in[j]] - 1) / bs; 46548e59246SSatish Balay #endif 466f4f49eeaSPierre Jolivet if (col < 0 && !((Mat_SeqBAIJ *)baij->B->data)->nonew) { 4679566063dSJacob Faibussowitsch PetscCall(MatDisAssemble_MPIBAIJ(mat)); 468ab26458aSBarry Smith col = in[j]; 4695f80ce2aSJacob Faibussowitsch } else PetscCheck(col >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new blocked indexed nonzero block (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", im[i], in[j]); 470db4deed7SKarl Rupp } else col = in[j]; 4719566063dSJacob Faibussowitsch PetscCall(MatSetValuesBlocked_SeqBAIJ_Inlined(baij->B, row, col, barray, addv, im[i], in[j])); 472ab26458aSBarry Smith } 473ab26458aSBarry Smith } 474d64ed03dSBarry Smith } else { 4755f80ce2aSJacob Faibussowitsch PetscCheck(!mat->nooffprocentries, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Setting off process block indexed row %" PetscInt_FMT " even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set", im[i]); 476ab26458aSBarry Smith if (!baij->donotstash) { 477ff2fd236SBarry Smith if (roworiented) { 4789566063dSJacob Faibussowitsch PetscCall(MatStashValuesRowBlocked_Private(&mat->bstash, im[i], n, in, v, m, n, i)); 479ff2fd236SBarry Smith } else { 4809566063dSJacob Faibussowitsch PetscCall(MatStashValuesColBlocked_Private(&mat->bstash, im[i], n, in, v, m, n, i)); 481ff2fd236SBarry Smith } 482abef11f7SSatish Balay } 483ab26458aSBarry Smith } 484ab26458aSBarry Smith } 4853ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 486ab26458aSBarry Smith } 4876fa18ffdSBarry Smith 4880bdbc534SSatish Balay #define HASH_KEY 0.6180339887 489b24ad042SBarry Smith #define HASH(size, key, tmp) (tmp = (key) * HASH_KEY, (PetscInt)((size) * (tmp - (PetscInt)tmp))) 490b24ad042SBarry Smith /* #define HASH(size,key) ((PetscInt)((size)*fmod(((key)*HASH_KEY),1))) */ 491b24ad042SBarry Smith /* #define HASH(size,key,tmp) ((PetscInt)((size)*fmod(((key)*HASH_KEY),1))) */ 49266976f2fSJacob Faibussowitsch static PetscErrorCode MatSetValues_MPIBAIJ_HT(Mat mat, PetscInt m, const PetscInt im[], PetscInt n, const PetscInt in[], const PetscScalar v[], InsertMode addv) 493d71ae5a4SJacob Faibussowitsch { 4940bdbc534SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 495ace3abfcSBarry Smith PetscBool roworiented = baij->roworiented; 496b24ad042SBarry Smith PetscInt i, j, row, col; 497d0f46423SBarry Smith PetscInt rstart_orig = mat->rmap->rstart; 498d0f46423SBarry Smith PetscInt rend_orig = mat->rmap->rend, Nbs = baij->Nbs; 499d0f46423SBarry Smith PetscInt h1, key, size = baij->ht_size, bs = mat->rmap->bs, *HT = baij->ht, idx; 500329f5518SBarry Smith PetscReal tmp; 5013eda8832SBarry Smith MatScalar **HD = baij->hd, value; 502b24ad042SBarry Smith PetscInt total_ct = baij->ht_total_ct, insert_ct = baij->ht_insert_ct; 5030bdbc534SSatish Balay 5040bdbc534SSatish Balay PetscFunctionBegin; 5050bdbc534SSatish Balay for (i = 0; i < m; i++) { 50676bd3646SJed Brown if (PetscDefined(USE_DEBUG)) { 5075f80ce2aSJacob Faibussowitsch PetscCheck(im[i] >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Negative row"); 5085f80ce2aSJacob Faibussowitsch PetscCheck(im[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, im[i], mat->rmap->N - 1); 50976bd3646SJed Brown } 5100bdbc534SSatish Balay row = im[i]; 511c2760754SSatish Balay if (row >= rstart_orig && row < rend_orig) { 5120bdbc534SSatish Balay for (j = 0; j < n; j++) { 5130bdbc534SSatish Balay col = in[j]; 514db4deed7SKarl Rupp if (roworiented) value = v[i * n + j]; 515db4deed7SKarl Rupp else value = v[i + j * m]; 516b24ad042SBarry Smith /* Look up PetscInto the Hash Table */ 517c2760754SSatish Balay key = (row / bs) * Nbs + (col / bs) + 1; 518c2760754SSatish Balay h1 = HASH(size, key, tmp); 5190bdbc534SSatish Balay 520c2760754SSatish Balay idx = h1; 52176bd3646SJed Brown if (PetscDefined(USE_DEBUG)) { 522187ce0cbSSatish Balay insert_ct++; 523187ce0cbSSatish Balay total_ct++; 524187ce0cbSSatish Balay if (HT[idx] != key) { 525fbccb6d4SPierre Jolivet for (idx = h1; (idx < size) && (HT[idx] != key); idx++, total_ct++); 526187ce0cbSSatish Balay if (idx == size) { 527fbccb6d4SPierre Jolivet for (idx = 0; (idx < h1) && (HT[idx] != key); idx++, total_ct++); 5285f80ce2aSJacob Faibussowitsch PetscCheck(idx != h1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "(%" PetscInt_FMT ",%" PetscInt_FMT ") has no entry in the hash table", row, col); 529187ce0cbSSatish Balay } 530187ce0cbSSatish Balay } 53176bd3646SJed Brown } else if (HT[idx] != key) { 532fbccb6d4SPierre Jolivet for (idx = h1; (idx < size) && (HT[idx] != key); idx++); 533c2760754SSatish Balay if (idx == size) { 534fbccb6d4SPierre Jolivet for (idx = 0; (idx < h1) && (HT[idx] != key); idx++); 5355f80ce2aSJacob Faibussowitsch PetscCheck(idx != h1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "(%" PetscInt_FMT ",%" PetscInt_FMT ") has no entry in the hash table", row, col); 536c2760754SSatish Balay } 537c2760754SSatish Balay } 538c2760754SSatish Balay /* A HASH table entry is found, so insert the values at the correct address */ 539c2760754SSatish Balay if (addv == ADD_VALUES) *(HD[idx] + (col % bs) * bs + (row % bs)) += value; 540c2760754SSatish Balay else *(HD[idx] + (col % bs) * bs + (row % bs)) = value; 5410bdbc534SSatish Balay } 54226fbe8dcSKarl Rupp } else if (!baij->donotstash) { 543ff2fd236SBarry Smith if (roworiented) { 5449566063dSJacob Faibussowitsch PetscCall(MatStashValuesRow_Private(&mat->stash, im[i], n, in, v + i * n, PETSC_FALSE)); 545ff2fd236SBarry Smith } else { 5469566063dSJacob Faibussowitsch PetscCall(MatStashValuesCol_Private(&mat->stash, im[i], n, in, v + i, m, PETSC_FALSE)); 5470bdbc534SSatish Balay } 5480bdbc534SSatish Balay } 5490bdbc534SSatish Balay } 55076bd3646SJed Brown if (PetscDefined(USE_DEBUG)) { 551abf3b562SBarry Smith baij->ht_total_ct += total_ct; 552abf3b562SBarry Smith baij->ht_insert_ct += insert_ct; 55376bd3646SJed Brown } 5543ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5550bdbc534SSatish Balay } 5560bdbc534SSatish Balay 55766976f2fSJacob Faibussowitsch static PetscErrorCode MatSetValuesBlocked_MPIBAIJ_HT(Mat mat, PetscInt m, const PetscInt im[], PetscInt n, const PetscInt in[], const PetscScalar v[], InsertMode addv) 558d71ae5a4SJacob Faibussowitsch { 5590bdbc534SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 560ace3abfcSBarry Smith PetscBool roworiented = baij->roworiented; 561b24ad042SBarry Smith PetscInt i, j, ii, jj, row, col; 562899cda47SBarry Smith PetscInt rstart = baij->rstartbs; 563d0f46423SBarry Smith PetscInt rend = mat->rmap->rend, stepval, bs = mat->rmap->bs, bs2 = baij->bs2, nbs2 = n * bs2; 564b24ad042SBarry Smith PetscInt h1, key, size = baij->ht_size, idx, *HT = baij->ht, Nbs = baij->Nbs; 565329f5518SBarry Smith PetscReal tmp; 5663eda8832SBarry Smith MatScalar **HD = baij->hd, *baij_a; 567dd6ea824SBarry Smith const PetscScalar *v_t, *value; 568b24ad042SBarry Smith PetscInt total_ct = baij->ht_total_ct, insert_ct = baij->ht_insert_ct; 5690bdbc534SSatish Balay 570d0a41580SSatish Balay PetscFunctionBegin; 57126fbe8dcSKarl Rupp if (roworiented) stepval = (n - 1) * bs; 57226fbe8dcSKarl Rupp else stepval = (m - 1) * bs; 57326fbe8dcSKarl Rupp 5740bdbc534SSatish Balay for (i = 0; i < m; i++) { 57576bd3646SJed Brown if (PetscDefined(USE_DEBUG)) { 5765f80ce2aSJacob Faibussowitsch PetscCheck(im[i] >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Negative row: %" PetscInt_FMT, im[i]); 5775f80ce2aSJacob Faibussowitsch PetscCheck(im[i] < baij->Mbs, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, im[i], baij->Mbs - 1); 57876bd3646SJed Brown } 5790bdbc534SSatish Balay row = im[i]; 580ab715e2cSSatish Balay v_t = v + i * nbs2; 581c2760754SSatish Balay if (row >= rstart && row < rend) { 5820bdbc534SSatish Balay for (j = 0; j < n; j++) { 5830bdbc534SSatish Balay col = in[j]; 5840bdbc534SSatish Balay 5850bdbc534SSatish Balay /* Look up into the Hash Table */ 586c2760754SSatish Balay key = row * Nbs + col + 1; 587c2760754SSatish Balay h1 = HASH(size, key, tmp); 5880bdbc534SSatish Balay 589c2760754SSatish Balay idx = h1; 59076bd3646SJed Brown if (PetscDefined(USE_DEBUG)) { 591187ce0cbSSatish Balay total_ct++; 592187ce0cbSSatish Balay insert_ct++; 593187ce0cbSSatish Balay if (HT[idx] != key) { 594fbccb6d4SPierre Jolivet for (idx = h1; (idx < size) && (HT[idx] != key); idx++, total_ct++); 595187ce0cbSSatish Balay if (idx == size) { 596fbccb6d4SPierre Jolivet for (idx = 0; (idx < h1) && (HT[idx] != key); idx++, total_ct++); 5975f80ce2aSJacob Faibussowitsch PetscCheck(idx != h1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "(%" PetscInt_FMT ",%" PetscInt_FMT ") has no entry in the hash table", row, col); 598187ce0cbSSatish Balay } 599187ce0cbSSatish Balay } 60076bd3646SJed Brown } else if (HT[idx] != key) { 601fbccb6d4SPierre Jolivet for (idx = h1; (idx < size) && (HT[idx] != key); idx++); 602c2760754SSatish Balay if (idx == size) { 603fbccb6d4SPierre Jolivet for (idx = 0; (idx < h1) && (HT[idx] != key); idx++); 6045f80ce2aSJacob Faibussowitsch PetscCheck(idx != h1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "(%" PetscInt_FMT ",%" PetscInt_FMT ") has no entry in the hash table", row, col); 605c2760754SSatish Balay } 606c2760754SSatish Balay } 607c2760754SSatish Balay baij_a = HD[idx]; 6080bdbc534SSatish Balay if (roworiented) { 609c2760754SSatish Balay /*value = v + i*(stepval+bs)*bs + j*bs;*/ 610187ce0cbSSatish Balay /* value = v + (i*(stepval+bs)+j)*bs; */ 611187ce0cbSSatish Balay value = v_t; 612187ce0cbSSatish Balay v_t += bs; 613fef45726SSatish Balay if (addv == ADD_VALUES) { 614c2760754SSatish Balay for (ii = 0; ii < bs; ii++, value += stepval) { 615ad540459SPierre Jolivet for (jj = ii; jj < bs2; jj += bs) baij_a[jj] += *value++; 616b4cc0f5aSSatish Balay } 617fef45726SSatish Balay } else { 618c2760754SSatish Balay for (ii = 0; ii < bs; ii++, value += stepval) { 619ad540459SPierre Jolivet for (jj = ii; jj < bs2; jj += bs) baij_a[jj] = *value++; 620fef45726SSatish Balay } 621fef45726SSatish Balay } 6220bdbc534SSatish Balay } else { 6230bdbc534SSatish Balay value = v + j * (stepval + bs) * bs + i * bs; 624fef45726SSatish Balay if (addv == ADD_VALUES) { 625b4cc0f5aSSatish Balay for (ii = 0; ii < bs; ii++, value += stepval, baij_a += bs) { 626ad540459SPierre Jolivet for (jj = 0; jj < bs; jj++) baij_a[jj] += *value++; 627fef45726SSatish Balay } 628fef45726SSatish Balay } else { 629fef45726SSatish Balay for (ii = 0; ii < bs; ii++, value += stepval, baij_a += bs) { 630ad540459SPierre Jolivet for (jj = 0; jj < bs; jj++) baij_a[jj] = *value++; 631b4cc0f5aSSatish Balay } 6320bdbc534SSatish Balay } 6330bdbc534SSatish Balay } 6340bdbc534SSatish Balay } 6350bdbc534SSatish Balay } else { 6360bdbc534SSatish Balay if (!baij->donotstash) { 6370bdbc534SSatish Balay if (roworiented) { 6389566063dSJacob Faibussowitsch PetscCall(MatStashValuesRowBlocked_Private(&mat->bstash, im[i], n, in, v, m, n, i)); 6390bdbc534SSatish Balay } else { 6409566063dSJacob Faibussowitsch PetscCall(MatStashValuesColBlocked_Private(&mat->bstash, im[i], n, in, v, m, n, i)); 6410bdbc534SSatish Balay } 6420bdbc534SSatish Balay } 6430bdbc534SSatish Balay } 6440bdbc534SSatish Balay } 64576bd3646SJed Brown if (PetscDefined(USE_DEBUG)) { 646abf3b562SBarry Smith baij->ht_total_ct += total_ct; 647abf3b562SBarry Smith baij->ht_insert_ct += insert_ct; 64876bd3646SJed Brown } 6493ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6500bdbc534SSatish Balay } 651133cdb44SSatish Balay 65266976f2fSJacob Faibussowitsch static PetscErrorCode MatGetValues_MPIBAIJ(Mat mat, PetscInt m, const PetscInt idxm[], PetscInt n, const PetscInt idxn[], PetscScalar v[]) 653d71ae5a4SJacob Faibussowitsch { 654d6de1c52SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 655d0f46423SBarry Smith PetscInt bs = mat->rmap->bs, i, j, bsrstart = mat->rmap->rstart, bsrend = mat->rmap->rend; 656d0f46423SBarry Smith PetscInt bscstart = mat->cmap->rstart, bscend = mat->cmap->rend, row, col, data; 657d6de1c52SSatish Balay 658133cdb44SSatish Balay PetscFunctionBegin; 659d6de1c52SSatish Balay for (i = 0; i < m; i++) { 66054c59aa7SJacob Faibussowitsch if (idxm[i] < 0) continue; /* negative row */ 66154c59aa7SJacob Faibussowitsch PetscCheck(idxm[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, idxm[i], mat->rmap->N - 1); 662d6de1c52SSatish Balay if (idxm[i] >= bsrstart && idxm[i] < bsrend) { 663d6de1c52SSatish Balay row = idxm[i] - bsrstart; 664d6de1c52SSatish Balay for (j = 0; j < n; j++) { 66554c59aa7SJacob Faibussowitsch if (idxn[j] < 0) continue; /* negative column */ 66654c59aa7SJacob Faibussowitsch PetscCheck(idxn[j] < mat->cmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, idxn[j], mat->cmap->N - 1); 667d6de1c52SSatish Balay if (idxn[j] >= bscstart && idxn[j] < bscend) { 668d6de1c52SSatish Balay col = idxn[j] - bscstart; 6699566063dSJacob Faibussowitsch PetscCall(MatGetValues_SeqBAIJ(baij->A, 1, &row, 1, &col, v + i * n + j)); 670d64ed03dSBarry Smith } else { 67148a46eb9SPierre Jolivet if (!baij->colmap) PetscCall(MatCreateColmap_MPIBAIJ_Private(mat)); 672aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 673eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIGetWithDefault(baij->colmap, idxn[j] / bs + 1, 0, &data)); 674fa46199cSSatish Balay data--; 67548e59246SSatish Balay #else 67648e59246SSatish Balay data = baij->colmap[idxn[j] / bs] - 1; 67748e59246SSatish Balay #endif 67848e59246SSatish Balay if ((data < 0) || (baij->garray[data / bs] != idxn[j] / bs)) *(v + i * n + j) = 0.0; 679d9d09a02SSatish Balay else { 68048e59246SSatish Balay col = data + idxn[j] % bs; 6819566063dSJacob Faibussowitsch PetscCall(MatGetValues_SeqBAIJ(baij->B, 1, &row, 1, &col, v + i * n + j)); 682d6de1c52SSatish Balay } 683d6de1c52SSatish Balay } 684d6de1c52SSatish Balay } 685f23aa3ddSBarry Smith } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "Only local values currently supported"); 686d6de1c52SSatish Balay } 6873ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 688d6de1c52SSatish Balay } 689d6de1c52SSatish Balay 69066976f2fSJacob Faibussowitsch static PetscErrorCode MatNorm_MPIBAIJ(Mat mat, NormType type, PetscReal *nrm) 691d71ae5a4SJacob Faibussowitsch { 692d6de1c52SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 693d6de1c52SSatish Balay Mat_SeqBAIJ *amat = (Mat_SeqBAIJ *)baij->A->data, *bmat = (Mat_SeqBAIJ *)baij->B->data; 694d0f46423SBarry Smith PetscInt i, j, bs2 = baij->bs2, bs = baij->A->rmap->bs, nz, row, col; 695329f5518SBarry Smith PetscReal sum = 0.0; 6963eda8832SBarry Smith MatScalar *v; 697d6de1c52SSatish Balay 698d64ed03dSBarry Smith PetscFunctionBegin; 699d6de1c52SSatish Balay if (baij->size == 1) { 7009566063dSJacob Faibussowitsch PetscCall(MatNorm(baij->A, type, nrm)); 701d6de1c52SSatish Balay } else { 702d6de1c52SSatish Balay if (type == NORM_FROBENIUS) { 703d6de1c52SSatish Balay v = amat->a; 7048a62d963SHong Zhang nz = amat->nz * bs2; 7058a62d963SHong Zhang for (i = 0; i < nz; i++) { 7069371c9d4SSatish Balay sum += PetscRealPart(PetscConj(*v) * (*v)); 7079371c9d4SSatish Balay v++; 708d6de1c52SSatish Balay } 709d6de1c52SSatish Balay v = bmat->a; 7108a62d963SHong Zhang nz = bmat->nz * bs2; 7118a62d963SHong Zhang for (i = 0; i < nz; i++) { 7129371c9d4SSatish Balay sum += PetscRealPart(PetscConj(*v) * (*v)); 7139371c9d4SSatish Balay v++; 714d6de1c52SSatish Balay } 715462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&sum, nrm, 1, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)mat))); 7168f1a2a5eSBarry Smith *nrm = PetscSqrtReal(*nrm); 7178a62d963SHong Zhang } else if (type == NORM_1) { /* max column sum */ 718e91c04dfSPierre Jolivet PetscReal *tmp; 719899cda47SBarry Smith PetscInt *jj, *garray = baij->garray, cstart = baij->rstartbs; 7206497c311SBarry Smith 7219566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(mat->cmap->N, &tmp)); 7229371c9d4SSatish Balay v = amat->a; 7239371c9d4SSatish Balay jj = amat->j; 7248a62d963SHong Zhang for (i = 0; i < amat->nz; i++) { 7258a62d963SHong Zhang for (j = 0; j < bs; j++) { 7268a62d963SHong Zhang col = bs * (cstart + *jj) + j; /* column index */ 7278a62d963SHong Zhang for (row = 0; row < bs; row++) { 7289371c9d4SSatish Balay tmp[col] += PetscAbsScalar(*v); 7299371c9d4SSatish Balay v++; 7308a62d963SHong Zhang } 7318a62d963SHong Zhang } 7328a62d963SHong Zhang jj++; 7338a62d963SHong Zhang } 7349371c9d4SSatish Balay v = bmat->a; 7359371c9d4SSatish Balay jj = bmat->j; 7368a62d963SHong Zhang for (i = 0; i < bmat->nz; i++) { 7378a62d963SHong Zhang for (j = 0; j < bs; j++) { 7388a62d963SHong Zhang col = bs * garray[*jj] + j; 7398a62d963SHong Zhang for (row = 0; row < bs; row++) { 7409371c9d4SSatish Balay tmp[col] += PetscAbsScalar(*v); 7419371c9d4SSatish Balay v++; 7428a62d963SHong Zhang } 7438a62d963SHong Zhang } 7448a62d963SHong Zhang jj++; 7458a62d963SHong Zhang } 746e91c04dfSPierre Jolivet PetscCallMPI(MPIU_Allreduce(MPI_IN_PLACE, tmp, mat->cmap->N, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)mat))); 7478a62d963SHong Zhang *nrm = 0.0; 748d0f46423SBarry Smith for (j = 0; j < mat->cmap->N; j++) { 749e91c04dfSPierre Jolivet if (tmp[j] > *nrm) *nrm = tmp[j]; 7508a62d963SHong Zhang } 7519566063dSJacob Faibussowitsch PetscCall(PetscFree(tmp)); 7528a62d963SHong Zhang } else if (type == NORM_INFINITY) { /* max row sum */ 753577dd1f9SKris Buschelman PetscReal *sums; 7549566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(bs, &sums)); 7558a62d963SHong Zhang sum = 0.0; 7568a62d963SHong Zhang for (j = 0; j < amat->mbs; j++) { 7578a62d963SHong Zhang for (row = 0; row < bs; row++) sums[row] = 0.0; 7588a62d963SHong Zhang v = amat->a + bs2 * amat->i[j]; 7598a62d963SHong Zhang nz = amat->i[j + 1] - amat->i[j]; 7608a62d963SHong Zhang for (i = 0; i < nz; i++) { 7618a62d963SHong Zhang for (col = 0; col < bs; col++) { 7628a62d963SHong Zhang for (row = 0; row < bs; row++) { 7639371c9d4SSatish Balay sums[row] += PetscAbsScalar(*v); 7649371c9d4SSatish Balay v++; 7658a62d963SHong Zhang } 7668a62d963SHong Zhang } 7678a62d963SHong Zhang } 7688a62d963SHong Zhang v = bmat->a + bs2 * bmat->i[j]; 7698a62d963SHong Zhang nz = bmat->i[j + 1] - bmat->i[j]; 7708a62d963SHong Zhang for (i = 0; i < nz; i++) { 7718a62d963SHong Zhang for (col = 0; col < bs; col++) { 7728a62d963SHong Zhang for (row = 0; row < bs; row++) { 7739371c9d4SSatish Balay sums[row] += PetscAbsScalar(*v); 7749371c9d4SSatish Balay v++; 7758a62d963SHong Zhang } 7768a62d963SHong Zhang } 7778a62d963SHong Zhang } 7788a62d963SHong Zhang for (row = 0; row < bs; row++) { 7798a62d963SHong Zhang if (sums[row] > sum) sum = sums[row]; 7808a62d963SHong Zhang } 7818a62d963SHong Zhang } 782462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&sum, nrm, 1, MPIU_REAL, MPIU_MAX, PetscObjectComm((PetscObject)mat))); 7839566063dSJacob Faibussowitsch PetscCall(PetscFree(sums)); 784ce94432eSBarry Smith } else SETERRQ(PetscObjectComm((PetscObject)mat), PETSC_ERR_SUP, "No support for this norm yet"); 785d64ed03dSBarry Smith } 7863ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 787d6de1c52SSatish Balay } 78857b952d6SSatish Balay 789fef45726SSatish Balay /* 790fef45726SSatish Balay Creates the hash table, and sets the table 791fef45726SSatish Balay This table is created only once. 792fef45726SSatish Balay If new entried need to be added to the matrix 793fef45726SSatish Balay then the hash table has to be destroyed and 794fef45726SSatish Balay recreated. 795fef45726SSatish Balay */ 79666976f2fSJacob Faibussowitsch static PetscErrorCode MatCreateHashTable_MPIBAIJ_Private(Mat mat, PetscReal factor) 797d71ae5a4SJacob Faibussowitsch { 798596b8d2eSBarry Smith Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 799596b8d2eSBarry Smith Mat A = baij->A, B = baij->B; 800596b8d2eSBarry Smith Mat_SeqBAIJ *a = (Mat_SeqBAIJ *)A->data, *b = (Mat_SeqBAIJ *)B->data; 801b24ad042SBarry Smith PetscInt i, j, k, nz = a->nz + b->nz, h1, *ai = a->i, *aj = a->j, *bi = b->i, *bj = b->j; 802fca92195SBarry Smith PetscInt ht_size, bs2 = baij->bs2, rstart = baij->rstartbs; 803899cda47SBarry Smith PetscInt cstart = baij->cstartbs, *garray = baij->garray, row, col, Nbs = baij->Nbs; 804b24ad042SBarry Smith PetscInt *HT, key; 8053eda8832SBarry Smith MatScalar **HD; 806329f5518SBarry Smith PetscReal tmp; 8076cf91177SBarry Smith #if defined(PETSC_USE_INFO) 808b24ad042SBarry Smith PetscInt ct = 0, max = 0; 8094a15367fSSatish Balay #endif 810fef45726SSatish Balay 811d64ed03dSBarry Smith PetscFunctionBegin; 8123ba16761SJacob Faibussowitsch if (baij->ht) PetscFunctionReturn(PETSC_SUCCESS); 813fef45726SSatish Balay 814fca92195SBarry Smith baij->ht_size = (PetscInt)(factor * nz); 815fca92195SBarry Smith ht_size = baij->ht_size; 8160bdbc534SSatish Balay 817fef45726SSatish Balay /* Allocate Memory for Hash Table */ 8189566063dSJacob Faibussowitsch PetscCall(PetscCalloc2(ht_size, &baij->hd, ht_size, &baij->ht)); 819b9e4cc15SSatish Balay HD = baij->hd; 820a07cd24cSSatish Balay HT = baij->ht; 821b9e4cc15SSatish Balay 822596b8d2eSBarry Smith /* Loop Over A */ 8230bdbc534SSatish Balay for (i = 0; i < a->mbs; i++) { 824596b8d2eSBarry Smith for (j = ai[i]; j < ai[i + 1]; j++) { 8250bdbc534SSatish Balay row = i + rstart; 8260bdbc534SSatish Balay col = aj[j] + cstart; 827596b8d2eSBarry Smith 828187ce0cbSSatish Balay key = row * Nbs + col + 1; 829fca92195SBarry Smith h1 = HASH(ht_size, key, tmp); 830fca92195SBarry Smith for (k = 0; k < ht_size; k++) { 831fca92195SBarry Smith if (!HT[(h1 + k) % ht_size]) { 832fca92195SBarry Smith HT[(h1 + k) % ht_size] = key; 833fca92195SBarry Smith HD[(h1 + k) % ht_size] = a->a + j * bs2; 834596b8d2eSBarry Smith break; 8356cf91177SBarry Smith #if defined(PETSC_USE_INFO) 836187ce0cbSSatish Balay } else { 837187ce0cbSSatish Balay ct++; 838187ce0cbSSatish Balay #endif 839596b8d2eSBarry Smith } 840187ce0cbSSatish Balay } 8416cf91177SBarry Smith #if defined(PETSC_USE_INFO) 842187ce0cbSSatish Balay if (k > max) max = k; 843187ce0cbSSatish Balay #endif 844596b8d2eSBarry Smith } 845596b8d2eSBarry Smith } 846596b8d2eSBarry Smith /* Loop Over B */ 8470bdbc534SSatish Balay for (i = 0; i < b->mbs; i++) { 848596b8d2eSBarry Smith for (j = bi[i]; j < bi[i + 1]; j++) { 8490bdbc534SSatish Balay row = i + rstart; 8500bdbc534SSatish Balay col = garray[bj[j]]; 851187ce0cbSSatish Balay key = row * Nbs + col + 1; 852fca92195SBarry Smith h1 = HASH(ht_size, key, tmp); 853fca92195SBarry Smith for (k = 0; k < ht_size; k++) { 854fca92195SBarry Smith if (!HT[(h1 + k) % ht_size]) { 855fca92195SBarry Smith HT[(h1 + k) % ht_size] = key; 856fca92195SBarry Smith HD[(h1 + k) % ht_size] = b->a + j * bs2; 857596b8d2eSBarry Smith break; 8586cf91177SBarry Smith #if defined(PETSC_USE_INFO) 859187ce0cbSSatish Balay } else { 860187ce0cbSSatish Balay ct++; 861187ce0cbSSatish Balay #endif 862596b8d2eSBarry Smith } 863187ce0cbSSatish Balay } 8646cf91177SBarry Smith #if defined(PETSC_USE_INFO) 865187ce0cbSSatish Balay if (k > max) max = k; 866187ce0cbSSatish Balay #endif 867596b8d2eSBarry Smith } 868596b8d2eSBarry Smith } 869596b8d2eSBarry Smith 870596b8d2eSBarry Smith /* Print Summary */ 8716cf91177SBarry Smith #if defined(PETSC_USE_INFO) 872fca92195SBarry Smith for (i = 0, j = 0; i < ht_size; i++) { 87326fbe8dcSKarl Rupp if (HT[i]) j++; 874c38d4ed2SBarry Smith } 875835f2295SStefano Zampini PetscCall(PetscInfo(mat, "Average Search = %5.2g,max search = %" PetscInt_FMT "\n", (!j) ? 0.0 : (double)(((PetscReal)(ct + j)) / j), max)); 876187ce0cbSSatish Balay #endif 8773ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 878596b8d2eSBarry Smith } 87957b952d6SSatish Balay 88066976f2fSJacob Faibussowitsch static PetscErrorCode MatAssemblyBegin_MPIBAIJ(Mat mat, MatAssemblyType mode) 881d71ae5a4SJacob Faibussowitsch { 882bbb85fb3SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 883b24ad042SBarry Smith PetscInt nstash, reallocs; 884bbb85fb3SSatish Balay 885bbb85fb3SSatish Balay PetscFunctionBegin; 8863ba16761SJacob Faibussowitsch if (baij->donotstash || mat->nooffprocentries) PetscFunctionReturn(PETSC_SUCCESS); 887bbb85fb3SSatish Balay 8889566063dSJacob Faibussowitsch PetscCall(MatStashScatterBegin_Private(mat, &mat->stash, mat->rmap->range)); 8899566063dSJacob Faibussowitsch PetscCall(MatStashScatterBegin_Private(mat, &mat->bstash, baij->rangebs)); 8909566063dSJacob Faibussowitsch PetscCall(MatStashGetInfo_Private(&mat->stash, &nstash, &reallocs)); 8919566063dSJacob Faibussowitsch PetscCall(PetscInfo(mat, "Stash has %" PetscInt_FMT " entries,uses %" PetscInt_FMT " mallocs.\n", nstash, reallocs)); 8929566063dSJacob Faibussowitsch PetscCall(MatStashGetInfo_Private(&mat->bstash, &nstash, &reallocs)); 8939566063dSJacob Faibussowitsch PetscCall(PetscInfo(mat, "Block-Stash has %" PetscInt_FMT " entries, uses %" PetscInt_FMT " mallocs.\n", nstash, reallocs)); 8943ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 895bbb85fb3SSatish Balay } 896bbb85fb3SSatish Balay 89766976f2fSJacob Faibussowitsch static PetscErrorCode MatAssemblyEnd_MPIBAIJ(Mat mat, MatAssemblyType mode) 898d71ae5a4SJacob Faibussowitsch { 899bbb85fb3SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 90091c97fd4SSatish Balay Mat_SeqBAIJ *a = (Mat_SeqBAIJ *)baij->A->data; 901b24ad042SBarry Smith PetscInt i, j, rstart, ncols, flg, bs2 = baij->bs2; 902e44c0bd4SBarry Smith PetscInt *row, *col; 903ace3abfcSBarry Smith PetscBool r1, r2, r3, other_disassembled; 9043eda8832SBarry Smith MatScalar *val; 905b24ad042SBarry Smith PetscMPIInt n; 906bbb85fb3SSatish Balay 907bbb85fb3SSatish Balay PetscFunctionBegin; 9085fd66863SKarl Rupp /* do not use 'b=(Mat_SeqBAIJ*)baij->B->data' as B can be reset in disassembly */ 9094cb17eb5SBarry Smith if (!baij->donotstash && !mat->nooffprocentries) { 910a2d1c673SSatish Balay while (1) { 9119566063dSJacob Faibussowitsch PetscCall(MatStashScatterGetMesg_Private(&mat->stash, &n, &row, &col, &val, &flg)); 912a2d1c673SSatish Balay if (!flg) break; 913a2d1c673SSatish Balay 914bbb85fb3SSatish Balay for (i = 0; i < n;) { 915bbb85fb3SSatish Balay /* Now identify the consecutive vals belonging to the same row */ 91626fbe8dcSKarl Rupp for (j = i, rstart = row[j]; j < n; j++) { 91726fbe8dcSKarl Rupp if (row[j] != rstart) break; 91826fbe8dcSKarl Rupp } 919bbb85fb3SSatish Balay if (j < n) ncols = j - i; 920bbb85fb3SSatish Balay else ncols = n - i; 921bbb85fb3SSatish Balay /* Now assemble all these values with a single function call */ 9229566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPIBAIJ(mat, 1, row + i, ncols, col + i, val + i, mat->insertmode)); 923bbb85fb3SSatish Balay i = j; 924bbb85fb3SSatish Balay } 925bbb85fb3SSatish Balay } 9269566063dSJacob Faibussowitsch PetscCall(MatStashScatterEnd_Private(&mat->stash)); 927a2d1c673SSatish Balay /* Now process the block-stash. Since the values are stashed column-oriented, 9285e116b59SBarry Smith set the row-oriented flag to column-oriented, and after MatSetValues() 929a2d1c673SSatish Balay restore the original flags */ 930a2d1c673SSatish Balay r1 = baij->roworiented; 931a2d1c673SSatish Balay r2 = a->roworiented; 93291c97fd4SSatish Balay r3 = ((Mat_SeqBAIJ *)baij->B->data)->roworiented; 93326fbe8dcSKarl Rupp 9347c922b88SBarry Smith baij->roworiented = PETSC_FALSE; 9357c922b88SBarry Smith a->roworiented = PETSC_FALSE; 936f4f49eeaSPierre Jolivet ((Mat_SeqBAIJ *)baij->B->data)->roworiented = PETSC_FALSE; 937a2d1c673SSatish Balay while (1) { 9389566063dSJacob Faibussowitsch PetscCall(MatStashScatterGetMesg_Private(&mat->bstash, &n, &row, &col, &val, &flg)); 939a2d1c673SSatish Balay if (!flg) break; 940a2d1c673SSatish Balay 941a2d1c673SSatish Balay for (i = 0; i < n;) { 942a2d1c673SSatish Balay /* Now identify the consecutive vals belonging to the same row */ 94326fbe8dcSKarl Rupp for (j = i, rstart = row[j]; j < n; j++) { 94426fbe8dcSKarl Rupp if (row[j] != rstart) break; 94526fbe8dcSKarl Rupp } 946a2d1c673SSatish Balay if (j < n) ncols = j - i; 947a2d1c673SSatish Balay else ncols = n - i; 9489566063dSJacob Faibussowitsch PetscCall(MatSetValuesBlocked_MPIBAIJ(mat, 1, row + i, ncols, col + i, val + i * bs2, mat->insertmode)); 949a2d1c673SSatish Balay i = j; 950a2d1c673SSatish Balay } 951a2d1c673SSatish Balay } 9529566063dSJacob Faibussowitsch PetscCall(MatStashScatterEnd_Private(&mat->bstash)); 95326fbe8dcSKarl Rupp 954a2d1c673SSatish Balay baij->roworiented = r1; 955a2d1c673SSatish Balay a->roworiented = r2; 9565e116b59SBarry Smith ((Mat_SeqBAIJ *)baij->B->data)->roworiented = r3; 957bbb85fb3SSatish Balay } 958bbb85fb3SSatish Balay 9599566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(baij->A, mode)); 9609566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(baij->A, mode)); 961bbb85fb3SSatish Balay 962bbb85fb3SSatish Balay /* determine if any processor has disassembled, if so we must 9636aad120cSJose E. Roman also disassemble ourselves, in order that we may reassemble. */ 964bbb85fb3SSatish Balay /* 965bbb85fb3SSatish Balay if nonzero structure of submatrix B cannot change then we know that 966bbb85fb3SSatish Balay no processor disassembled thus we can skip this stuff 967bbb85fb3SSatish Balay */ 968bbb85fb3SSatish Balay if (!((Mat_SeqBAIJ *)baij->B->data)->nonew) { 969462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&mat->was_assembled, &other_disassembled, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)mat))); 97048a46eb9SPierre Jolivet if (mat->was_assembled && !other_disassembled) PetscCall(MatDisAssemble_MPIBAIJ(mat)); 971bbb85fb3SSatish Balay } 972bbb85fb3SSatish Balay 97348a46eb9SPierre Jolivet if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) PetscCall(MatSetUpMultiply_MPIBAIJ(mat)); 9749566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(baij->B, mode)); 9759566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(baij->B, mode)); 976bbb85fb3SSatish Balay 9776cf91177SBarry Smith #if defined(PETSC_USE_INFO) 978bbb85fb3SSatish Balay if (baij->ht && mode == MAT_FINAL_ASSEMBLY) { 9799566063dSJacob Faibussowitsch PetscCall(PetscInfo(mat, "Average Hash Table Search in MatSetValues = %5.2f\n", (double)((PetscReal)baij->ht_total_ct) / baij->ht_insert_ct)); 98026fbe8dcSKarl Rupp 981bbb85fb3SSatish Balay baij->ht_total_ct = 0; 982bbb85fb3SSatish Balay baij->ht_insert_ct = 0; 983bbb85fb3SSatish Balay } 984bbb85fb3SSatish Balay #endif 985bbb85fb3SSatish Balay if (baij->ht_flag && !baij->ht && mode == MAT_FINAL_ASSEMBLY) { 9869566063dSJacob Faibussowitsch PetscCall(MatCreateHashTable_MPIBAIJ_Private(mat, baij->ht_fact)); 98726fbe8dcSKarl Rupp 988bbb85fb3SSatish Balay mat->ops->setvalues = MatSetValues_MPIBAIJ_HT; 989bbb85fb3SSatish Balay mat->ops->setvaluesblocked = MatSetValuesBlocked_MPIBAIJ_HT; 990bbb85fb3SSatish Balay } 991bbb85fb3SSatish Balay 9929566063dSJacob Faibussowitsch PetscCall(PetscFree2(baij->rowvalues, baij->rowindices)); 99326fbe8dcSKarl Rupp 994f4259b30SLisandro Dalcin baij->rowvalues = NULL; 9954f9cfa9eSBarry Smith 9964f9cfa9eSBarry Smith /* if no new nonzero locations are allowed in matrix then only set the matrix state the first time through */ 997f4f49eeaSPierre Jolivet if ((!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) || !((Mat_SeqBAIJ *)baij->A->data)->nonew) { 998e56f5c9eSBarry Smith PetscObjectState state = baij->A->nonzerostate + baij->B->nonzerostate; 999462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&state, &mat->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)mat))); 1000e56f5c9eSBarry Smith } 10013ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1002bbb85fb3SSatish Balay } 100357b952d6SSatish Balay 10047da1fb6eSBarry Smith extern PetscErrorCode MatView_SeqBAIJ(Mat, PetscViewer); 10059804daf3SBarry Smith #include <petscdraw.h> 1006d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatView_MPIBAIJ_ASCIIorDraworSocket(Mat mat, PetscViewer viewer) 1007d71ae5a4SJacob Faibussowitsch { 100857b952d6SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 10097da1fb6eSBarry Smith PetscMPIInt rank = baij->rank; 1010d0f46423SBarry Smith PetscInt bs = mat->rmap->bs; 1011ace3abfcSBarry Smith PetscBool iascii, isdraw; 1012b0a32e0cSBarry Smith PetscViewer sviewer; 1013f3ef73ceSBarry Smith PetscViewerFormat format; 101457b952d6SSatish Balay 1015d64ed03dSBarry Smith PetscFunctionBegin; 10169566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &iascii)); 10179566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERDRAW, &isdraw)); 101832077d6dSBarry Smith if (iascii) { 10199566063dSJacob Faibussowitsch PetscCall(PetscViewerGetFormat(viewer, &format)); 1020456192e2SBarry Smith if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 10214e220ebcSLois Curfman McInnes MatInfo info; 10229566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)mat), &rank)); 10239566063dSJacob Faibussowitsch PetscCall(MatGetInfo(mat, MAT_LOCAL, &info)); 10249566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPushSynchronized(viewer)); 10259371c9d4SSatish Balay PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] Local rows %" PetscInt_FMT " nz %" PetscInt_FMT " nz alloced %" PetscInt_FMT " bs %" PetscInt_FMT " mem %g\n", rank, mat->rmap->n, (PetscInt)info.nz_used, (PetscInt)info.nz_allocated, 1026835f2295SStefano Zampini mat->rmap->bs, info.memory)); 10279566063dSJacob Faibussowitsch PetscCall(MatGetInfo(baij->A, MAT_LOCAL, &info)); 10289566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] on-diagonal part: nz %" PetscInt_FMT " \n", rank, (PetscInt)info.nz_used)); 10299566063dSJacob Faibussowitsch PetscCall(MatGetInfo(baij->B, MAT_LOCAL, &info)); 10309566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] off-diagonal part: nz %" PetscInt_FMT " \n", rank, (PetscInt)info.nz_used)); 10319566063dSJacob Faibussowitsch PetscCall(PetscViewerFlush(viewer)); 10329566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPopSynchronized(viewer)); 10339566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "Information on VecScatter used in matrix-vector product: \n")); 10349566063dSJacob Faibussowitsch PetscCall(VecScatterView(baij->Mvctx, viewer)); 10353ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1036fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_INFO) { 10379566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, " block size is %" PetscInt_FMT "\n", bs)); 10383ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 103904929863SHong Zhang } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) { 10403ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 104157b952d6SSatish Balay } 104257b952d6SSatish Balay } 104357b952d6SSatish Balay 10440f5bd95cSBarry Smith if (isdraw) { 1045b0a32e0cSBarry Smith PetscDraw draw; 1046ace3abfcSBarry Smith PetscBool isnull; 10479566063dSJacob Faibussowitsch PetscCall(PetscViewerDrawGetDraw(viewer, 0, &draw)); 10489566063dSJacob Faibussowitsch PetscCall(PetscDrawIsNull(draw, &isnull)); 10493ba16761SJacob Faibussowitsch if (isnull) PetscFunctionReturn(PETSC_SUCCESS); 105057b952d6SSatish Balay } 105157b952d6SSatish Balay 10527da1fb6eSBarry Smith { 105357b952d6SSatish Balay /* assemble the entire matrix onto first processor. */ 105457b952d6SSatish Balay Mat A; 105557b952d6SSatish Balay Mat_SeqBAIJ *Aloc; 1056d0f46423SBarry Smith PetscInt M = mat->rmap->N, N = mat->cmap->N, *ai, *aj, col, i, j, k, *rvals, mbs = baij->mbs; 10573eda8832SBarry Smith MatScalar *a; 10583e219373SBarry Smith const char *matname; 105957b952d6SSatish Balay 1060f204ca49SKris Buschelman /* Here we are creating a temporary matrix, so will assume MPIBAIJ is acceptable */ 1061f204ca49SKris Buschelman /* Perhaps this should be the type of mat? */ 10629566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)mat), &A)); 1063dd400576SPatrick Sanan if (rank == 0) { 10649566063dSJacob Faibussowitsch PetscCall(MatSetSizes(A, M, N, M, N)); 1065d64ed03dSBarry Smith } else { 10669566063dSJacob Faibussowitsch PetscCall(MatSetSizes(A, 0, 0, M, N)); 106757b952d6SSatish Balay } 10689566063dSJacob Faibussowitsch PetscCall(MatSetType(A, MATMPIBAIJ)); 10699566063dSJacob Faibussowitsch PetscCall(MatMPIBAIJSetPreallocation(A, mat->rmap->bs, 0, NULL, 0, NULL)); 10709566063dSJacob Faibussowitsch PetscCall(MatSetOption(A, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_FALSE)); 107157b952d6SSatish Balay 107257b952d6SSatish Balay /* copy over the A part */ 107357b952d6SSatish Balay Aloc = (Mat_SeqBAIJ *)baij->A->data; 10749371c9d4SSatish Balay ai = Aloc->i; 10759371c9d4SSatish Balay aj = Aloc->j; 10769371c9d4SSatish Balay a = Aloc->a; 10779566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(bs, &rvals)); 107857b952d6SSatish Balay 107957b952d6SSatish Balay for (i = 0; i < mbs; i++) { 1080899cda47SBarry Smith rvals[0] = bs * (baij->rstartbs + i); 108126fbe8dcSKarl Rupp for (j = 1; j < bs; j++) rvals[j] = rvals[j - 1] + 1; 108257b952d6SSatish Balay for (j = ai[i]; j < ai[i + 1]; j++) { 1083899cda47SBarry Smith col = (baij->cstartbs + aj[j]) * bs; 108457b952d6SSatish Balay for (k = 0; k < bs; k++) { 10859566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPIBAIJ(A, bs, rvals, 1, &col, a, INSERT_VALUES)); 10869371c9d4SSatish Balay col++; 10879371c9d4SSatish Balay a += bs; 108857b952d6SSatish Balay } 108957b952d6SSatish Balay } 109057b952d6SSatish Balay } 109157b952d6SSatish Balay /* copy over the B part */ 109257b952d6SSatish Balay Aloc = (Mat_SeqBAIJ *)baij->B->data; 10939371c9d4SSatish Balay ai = Aloc->i; 10949371c9d4SSatish Balay aj = Aloc->j; 10959371c9d4SSatish Balay a = Aloc->a; 109657b952d6SSatish Balay for (i = 0; i < mbs; i++) { 1097899cda47SBarry Smith rvals[0] = bs * (baij->rstartbs + i); 109826fbe8dcSKarl Rupp for (j = 1; j < bs; j++) rvals[j] = rvals[j - 1] + 1; 109957b952d6SSatish Balay for (j = ai[i]; j < ai[i + 1]; j++) { 110057b952d6SSatish Balay col = baij->garray[aj[j]] * bs; 110157b952d6SSatish Balay for (k = 0; k < bs; k++) { 11029566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPIBAIJ(A, bs, rvals, 1, &col, a, INSERT_VALUES)); 11039371c9d4SSatish Balay col++; 11049371c9d4SSatish Balay a += bs; 110557b952d6SSatish Balay } 110657b952d6SSatish Balay } 110757b952d6SSatish Balay } 11089566063dSJacob Faibussowitsch PetscCall(PetscFree(rvals)); 11099566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(A, MAT_FINAL_ASSEMBLY)); 11109566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(A, MAT_FINAL_ASSEMBLY)); 111155843e3eSBarry Smith /* 111255843e3eSBarry Smith Everyone has to call to draw the matrix since the graphics waits are 1113b0a32e0cSBarry Smith synchronized across all processors that share the PetscDraw object 111455843e3eSBarry Smith */ 11159566063dSJacob Faibussowitsch PetscCall(PetscViewerGetSubViewer(viewer, PETSC_COMM_SELF, &sviewer)); 111623a3927dSBarry Smith if (((PetscObject)mat)->name) PetscCall(PetscObjectGetName((PetscObject)mat, &matname)); 1117dd400576SPatrick Sanan if (rank == 0) { 1118f4f49eeaSPierre Jolivet if (((PetscObject)mat)->name) PetscCall(PetscObjectSetName((PetscObject)((Mat_MPIBAIJ *)A->data)->A, matname)); 1119f4f49eeaSPierre Jolivet PetscCall(MatView_SeqBAIJ(((Mat_MPIBAIJ *)A->data)->A, sviewer)); 112057b952d6SSatish Balay } 11219566063dSJacob Faibussowitsch PetscCall(PetscViewerRestoreSubViewer(viewer, PETSC_COMM_SELF, &sviewer)); 11229566063dSJacob Faibussowitsch PetscCall(MatDestroy(&A)); 112357b952d6SSatish Balay } 11243ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 112557b952d6SSatish Balay } 112657b952d6SSatish Balay 1127618cc2edSLisandro Dalcin /* Used for both MPIBAIJ and MPISBAIJ matrices */ 1128d71ae5a4SJacob Faibussowitsch PetscErrorCode MatView_MPIBAIJ_Binary(Mat mat, PetscViewer viewer) 1129d71ae5a4SJacob Faibussowitsch { 1130b51a4376SLisandro Dalcin Mat_MPIBAIJ *aij = (Mat_MPIBAIJ *)mat->data; 1131b51a4376SLisandro Dalcin Mat_SeqBAIJ *A = (Mat_SeqBAIJ *)aij->A->data; 1132b51a4376SLisandro Dalcin Mat_SeqBAIJ *B = (Mat_SeqBAIJ *)aij->B->data; 1133b51a4376SLisandro Dalcin const PetscInt *garray = aij->garray; 113417a3732bSBarry Smith PetscInt header[4], M, N, m, rs, cs, bs, cnt, i, j, ja, jb, k, l; 11356497c311SBarry Smith PetscCount nz, hnz; 1136b51a4376SLisandro Dalcin PetscInt *rowlens, *colidxs; 1137b51a4376SLisandro Dalcin PetscScalar *matvals; 113817a3732bSBarry Smith PetscMPIInt rank; 1139660746e0SBarry Smith 1140660746e0SBarry Smith PetscFunctionBegin; 11419566063dSJacob Faibussowitsch PetscCall(PetscViewerSetUp(viewer)); 1142b51a4376SLisandro Dalcin 1143b51a4376SLisandro Dalcin M = mat->rmap->N; 1144b51a4376SLisandro Dalcin N = mat->cmap->N; 1145b51a4376SLisandro Dalcin m = mat->rmap->n; 1146b51a4376SLisandro Dalcin rs = mat->rmap->rstart; 1147b51a4376SLisandro Dalcin cs = mat->cmap->rstart; 1148b51a4376SLisandro Dalcin bs = mat->rmap->bs; 1149b51a4376SLisandro Dalcin nz = bs * bs * (A->nz + B->nz); 1150b51a4376SLisandro Dalcin 1151b51a4376SLisandro Dalcin /* write matrix header */ 1152660746e0SBarry Smith header[0] = MAT_FILE_CLASSID; 11539371c9d4SSatish Balay header[1] = M; 11549371c9d4SSatish Balay header[2] = N; 11556497c311SBarry Smith PetscCallMPI(MPI_Reduce(&nz, &hnz, 1, MPIU_COUNT, MPI_SUM, 0, PetscObjectComm((PetscObject)mat))); 115617a3732bSBarry Smith PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)mat), &rank)); 115717a3732bSBarry Smith if (rank == 0) PetscCall(PetscIntCast(hnz, &header[3])); 11589566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryWrite(viewer, header, 4, PETSC_INT)); 1159660746e0SBarry Smith 1160b51a4376SLisandro Dalcin /* fill in and store row lengths */ 11619566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m, &rowlens)); 1162b51a4376SLisandro Dalcin for (cnt = 0, i = 0; i < A->mbs; i++) 11639371c9d4SSatish Balay for (j = 0; j < bs; j++) rowlens[cnt++] = bs * (A->i[i + 1] - A->i[i] + B->i[i + 1] - B->i[i]); 11649566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryWriteAll(viewer, rowlens, m, rs, M, PETSC_INT)); 11659566063dSJacob Faibussowitsch PetscCall(PetscFree(rowlens)); 1166660746e0SBarry Smith 1167b51a4376SLisandro Dalcin /* fill in and store column indices */ 11689566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nz, &colidxs)); 1169b51a4376SLisandro Dalcin for (cnt = 0, i = 0; i < A->mbs; i++) { 1170b51a4376SLisandro Dalcin for (k = 0; k < bs; k++) { 1171b51a4376SLisandro Dalcin for (jb = B->i[i]; jb < B->i[i + 1]; jb++) { 1172b51a4376SLisandro Dalcin if (garray[B->j[jb]] > cs / bs) break; 11739371c9d4SSatish Balay for (l = 0; l < bs; l++) colidxs[cnt++] = bs * garray[B->j[jb]] + l; 1174660746e0SBarry Smith } 1175b51a4376SLisandro Dalcin for (ja = A->i[i]; ja < A->i[i + 1]; ja++) 11769371c9d4SSatish Balay for (l = 0; l < bs; l++) colidxs[cnt++] = bs * A->j[ja] + l + cs; 1177b51a4376SLisandro Dalcin for (; jb < B->i[i + 1]; jb++) 11789371c9d4SSatish Balay for (l = 0; l < bs; l++) colidxs[cnt++] = bs * garray[B->j[jb]] + l; 1179660746e0SBarry Smith } 1180660746e0SBarry Smith } 11816497c311SBarry Smith PetscCheck(cnt == nz, PETSC_COMM_SELF, PETSC_ERR_LIB, "Internal PETSc error: cnt = %" PetscInt_FMT " nz = %" PetscCount_FMT, cnt, nz); 11829566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryWriteAll(viewer, colidxs, nz, PETSC_DECIDE, PETSC_DECIDE, PETSC_INT)); 11839566063dSJacob Faibussowitsch PetscCall(PetscFree(colidxs)); 1184660746e0SBarry Smith 1185b51a4376SLisandro Dalcin /* fill in and store nonzero values */ 11869566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nz, &matvals)); 1187b51a4376SLisandro Dalcin for (cnt = 0, i = 0; i < A->mbs; i++) { 1188b51a4376SLisandro Dalcin for (k = 0; k < bs; k++) { 1189b51a4376SLisandro Dalcin for (jb = B->i[i]; jb < B->i[i + 1]; jb++) { 1190b51a4376SLisandro Dalcin if (garray[B->j[jb]] > cs / bs) break; 11919371c9d4SSatish Balay for (l = 0; l < bs; l++) matvals[cnt++] = B->a[bs * (bs * jb + l) + k]; 1192660746e0SBarry Smith } 1193b51a4376SLisandro Dalcin for (ja = A->i[i]; ja < A->i[i + 1]; ja++) 11949371c9d4SSatish Balay for (l = 0; l < bs; l++) matvals[cnt++] = A->a[bs * (bs * ja + l) + k]; 1195b51a4376SLisandro Dalcin for (; jb < B->i[i + 1]; jb++) 11969371c9d4SSatish Balay for (l = 0; l < bs; l++) matvals[cnt++] = B->a[bs * (bs * jb + l) + k]; 1197660746e0SBarry Smith } 1198b51a4376SLisandro Dalcin } 11999566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryWriteAll(viewer, matvals, nz, PETSC_DECIDE, PETSC_DECIDE, PETSC_SCALAR)); 12009566063dSJacob Faibussowitsch PetscCall(PetscFree(matvals)); 1201660746e0SBarry Smith 1202b51a4376SLisandro Dalcin /* write block size option to the viewer's .info file */ 12039566063dSJacob Faibussowitsch PetscCall(MatView_Binary_BlockSizes(mat, viewer)); 12043ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1205660746e0SBarry Smith } 1206660746e0SBarry Smith 1207d71ae5a4SJacob Faibussowitsch PetscErrorCode MatView_MPIBAIJ(Mat mat, PetscViewer viewer) 1208d71ae5a4SJacob Faibussowitsch { 1209ace3abfcSBarry Smith PetscBool iascii, isdraw, issocket, isbinary; 121057b952d6SSatish Balay 1211d64ed03dSBarry Smith PetscFunctionBegin; 12129566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &iascii)); 12139566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERDRAW, &isdraw)); 12149566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERSOCKET, &issocket)); 12159566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary)); 1216660746e0SBarry Smith if (iascii || isdraw || issocket) { 12179566063dSJacob Faibussowitsch PetscCall(MatView_MPIBAIJ_ASCIIorDraworSocket(mat, viewer)); 12181baa6e33SBarry Smith } else if (isbinary) PetscCall(MatView_MPIBAIJ_Binary(mat, viewer)); 12193ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 122057b952d6SSatish Balay } 122157b952d6SSatish Balay 122266976f2fSJacob Faibussowitsch static PetscErrorCode MatMult_MPIBAIJ(Mat A, Vec xx, Vec yy) 1223d71ae5a4SJacob Faibussowitsch { 1224cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 1225b24ad042SBarry Smith PetscInt nt; 1226cee3aa6bSSatish Balay 1227d64ed03dSBarry Smith PetscFunctionBegin; 12289566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(xx, &nt)); 12295f80ce2aSJacob Faibussowitsch PetscCheck(nt == A->cmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Incompatible partition of A and xx"); 12309566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(yy, &nt)); 1231da81f932SPierre Jolivet PetscCheck(nt == A->rmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Incompatible partition of A and yy"); 12329566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(a->Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD)); 12339566063dSJacob Faibussowitsch PetscCall((*a->A->ops->mult)(a->A, xx, yy)); 12349566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(a->Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD)); 12359566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multadd)(a->B, a->lvec, yy, yy)); 12363ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1237cee3aa6bSSatish Balay } 1238cee3aa6bSSatish Balay 123966976f2fSJacob Faibussowitsch static PetscErrorCode MatMultAdd_MPIBAIJ(Mat A, Vec xx, Vec yy, Vec zz) 1240d71ae5a4SJacob Faibussowitsch { 1241cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 1242d64ed03dSBarry Smith 1243d64ed03dSBarry Smith PetscFunctionBegin; 12449566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(a->Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD)); 12459566063dSJacob Faibussowitsch PetscCall((*a->A->ops->multadd)(a->A, xx, yy, zz)); 12469566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(a->Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD)); 12479566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multadd)(a->B, a->lvec, zz, zz)); 12483ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1249cee3aa6bSSatish Balay } 1250cee3aa6bSSatish Balay 125166976f2fSJacob Faibussowitsch static PetscErrorCode MatMultTranspose_MPIBAIJ(Mat A, Vec xx, Vec yy) 1252d71ae5a4SJacob Faibussowitsch { 1253cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 1254cee3aa6bSSatish Balay 1255d64ed03dSBarry Smith PetscFunctionBegin; 1256cee3aa6bSSatish Balay /* do nondiagonal part */ 12579566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multtranspose)(a->B, xx, a->lvec)); 1258cee3aa6bSSatish Balay /* do local part */ 12599566063dSJacob Faibussowitsch PetscCall((*a->A->ops->multtranspose)(a->A, xx, yy)); 1260e4a140f6SJunchao Zhang /* add partial results together */ 12619566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(a->Mvctx, a->lvec, yy, ADD_VALUES, SCATTER_REVERSE)); 12629566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(a->Mvctx, a->lvec, yy, ADD_VALUES, SCATTER_REVERSE)); 12633ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1264cee3aa6bSSatish Balay } 1265cee3aa6bSSatish Balay 126666976f2fSJacob Faibussowitsch static PetscErrorCode MatMultTransposeAdd_MPIBAIJ(Mat A, Vec xx, Vec yy, Vec zz) 1267d71ae5a4SJacob Faibussowitsch { 1268cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 1269cee3aa6bSSatish Balay 1270d64ed03dSBarry Smith PetscFunctionBegin; 1271cee3aa6bSSatish Balay /* do nondiagonal part */ 12729566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multtranspose)(a->B, xx, a->lvec)); 1273cee3aa6bSSatish Balay /* do local part */ 12749566063dSJacob Faibussowitsch PetscCall((*a->A->ops->multtransposeadd)(a->A, xx, yy, zz)); 1275e4a140f6SJunchao Zhang /* add partial results together */ 12769566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(a->Mvctx, a->lvec, zz, ADD_VALUES, SCATTER_REVERSE)); 12779566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(a->Mvctx, a->lvec, zz, ADD_VALUES, SCATTER_REVERSE)); 12783ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1279cee3aa6bSSatish Balay } 1280cee3aa6bSSatish Balay 1281cee3aa6bSSatish Balay /* 1282cee3aa6bSSatish Balay This only works correctly for square matrices where the subblock A->A is the 1283cee3aa6bSSatish Balay diagonal block 1284cee3aa6bSSatish Balay */ 128566976f2fSJacob Faibussowitsch static PetscErrorCode MatGetDiagonal_MPIBAIJ(Mat A, Vec v) 1286d71ae5a4SJacob Faibussowitsch { 1287d64ed03dSBarry Smith PetscFunctionBegin; 12885f80ce2aSJacob Faibussowitsch PetscCheck(A->rmap->N == A->cmap->N, PETSC_COMM_SELF, PETSC_ERR_SUP, "Supports only square matrix where A->A is diag block"); 12899566063dSJacob Faibussowitsch PetscCall(MatGetDiagonal(((Mat_MPIBAIJ *)A->data)->A, v)); 12903ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1291cee3aa6bSSatish Balay } 1292cee3aa6bSSatish Balay 129366976f2fSJacob Faibussowitsch static PetscErrorCode MatScale_MPIBAIJ(Mat A, PetscScalar aa) 1294d71ae5a4SJacob Faibussowitsch { 1295cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 1296d64ed03dSBarry Smith 1297d64ed03dSBarry Smith PetscFunctionBegin; 12989566063dSJacob Faibussowitsch PetscCall(MatScale(a->A, aa)); 12999566063dSJacob Faibussowitsch PetscCall(MatScale(a->B, aa)); 13003ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1301cee3aa6bSSatish Balay } 1302026e39d0SSatish Balay 1303d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetRow_MPIBAIJ(Mat matin, PetscInt row, PetscInt *nz, PetscInt **idx, PetscScalar **v) 1304d71ae5a4SJacob Faibussowitsch { 1305acdf5bf4SSatish Balay Mat_MPIBAIJ *mat = (Mat_MPIBAIJ *)matin->data; 130687828ca2SBarry Smith PetscScalar *vworkA, *vworkB, **pvA, **pvB, *v_p; 1307d0f46423SBarry Smith PetscInt bs = matin->rmap->bs, bs2 = mat->bs2, i, *cworkA, *cworkB, **pcA, **pcB; 1308d0f46423SBarry Smith PetscInt nztot, nzA, nzB, lrow, brstart = matin->rmap->rstart, brend = matin->rmap->rend; 1309899cda47SBarry Smith PetscInt *cmap, *idx_p, cstart = mat->cstartbs; 1310acdf5bf4SSatish Balay 1311d64ed03dSBarry Smith PetscFunctionBegin; 13125f80ce2aSJacob Faibussowitsch PetscCheck(row >= brstart && row < brend, PETSC_COMM_SELF, PETSC_ERR_SUP, "Only local rows"); 13135f80ce2aSJacob Faibussowitsch PetscCheck(!mat->getrowactive, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Already active"); 1314acdf5bf4SSatish Balay mat->getrowactive = PETSC_TRUE; 1315acdf5bf4SSatish Balay 1316acdf5bf4SSatish Balay if (!mat->rowvalues && (idx || v)) { 1317acdf5bf4SSatish Balay /* 1318acdf5bf4SSatish Balay allocate enough space to hold information from the longest row. 1319acdf5bf4SSatish Balay */ 1320acdf5bf4SSatish Balay Mat_SeqBAIJ *Aa = (Mat_SeqBAIJ *)mat->A->data, *Ba = (Mat_SeqBAIJ *)mat->B->data; 1321b24ad042SBarry Smith PetscInt max = 1, mbs = mat->mbs, tmp; 1322bd16c2feSSatish Balay for (i = 0; i < mbs; i++) { 1323acdf5bf4SSatish Balay tmp = Aa->i[i + 1] - Aa->i[i] + Ba->i[i + 1] - Ba->i[i]; 132426fbe8dcSKarl Rupp if (max < tmp) max = tmp; 1325acdf5bf4SSatish Balay } 13269566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(max * bs2, &mat->rowvalues, max * bs2, &mat->rowindices)); 1327acdf5bf4SSatish Balay } 1328d9d09a02SSatish Balay lrow = row - brstart; 1329acdf5bf4SSatish Balay 13309371c9d4SSatish Balay pvA = &vworkA; 13319371c9d4SSatish Balay pcA = &cworkA; 13329371c9d4SSatish Balay pvB = &vworkB; 13339371c9d4SSatish Balay pcB = &cworkB; 13349371c9d4SSatish Balay if (!v) { 13359371c9d4SSatish Balay pvA = NULL; 13369371c9d4SSatish Balay pvB = NULL; 13379371c9d4SSatish Balay } 13389371c9d4SSatish Balay if (!idx) { 13399371c9d4SSatish Balay pcA = NULL; 13409371c9d4SSatish Balay if (!v) pcB = NULL; 13419371c9d4SSatish Balay } 13429566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->getrow)(mat->A, lrow, &nzA, pcA, pvA)); 13439566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->getrow)(mat->B, lrow, &nzB, pcB, pvB)); 1344acdf5bf4SSatish Balay nztot = nzA + nzB; 1345acdf5bf4SSatish Balay 1346acdf5bf4SSatish Balay cmap = mat->garray; 1347acdf5bf4SSatish Balay if (v || idx) { 1348acdf5bf4SSatish Balay if (nztot) { 1349acdf5bf4SSatish Balay /* Sort by increasing column numbers, assuming A and B already sorted */ 1350b24ad042SBarry Smith PetscInt imark = -1; 1351acdf5bf4SSatish Balay if (v) { 1352acdf5bf4SSatish Balay *v = v_p = mat->rowvalues; 1353acdf5bf4SSatish Balay for (i = 0; i < nzB; i++) { 1354d9d09a02SSatish Balay if (cmap[cworkB[i] / bs] < cstart) v_p[i] = vworkB[i]; 1355acdf5bf4SSatish Balay else break; 1356acdf5bf4SSatish Balay } 1357acdf5bf4SSatish Balay imark = i; 1358acdf5bf4SSatish Balay for (i = 0; i < nzA; i++) v_p[imark + i] = vworkA[i]; 1359acdf5bf4SSatish Balay for (i = imark; i < nzB; i++) v_p[nzA + i] = vworkB[i]; 1360acdf5bf4SSatish Balay } 1361acdf5bf4SSatish Balay if (idx) { 1362acdf5bf4SSatish Balay *idx = idx_p = mat->rowindices; 1363acdf5bf4SSatish Balay if (imark > -1) { 1364ad540459SPierre Jolivet for (i = 0; i < imark; i++) idx_p[i] = cmap[cworkB[i] / bs] * bs + cworkB[i] % bs; 1365acdf5bf4SSatish Balay } else { 1366acdf5bf4SSatish Balay for (i = 0; i < nzB; i++) { 136726fbe8dcSKarl Rupp if (cmap[cworkB[i] / bs] < cstart) idx_p[i] = cmap[cworkB[i] / bs] * bs + cworkB[i] % bs; 1368acdf5bf4SSatish Balay else break; 1369acdf5bf4SSatish Balay } 1370acdf5bf4SSatish Balay imark = i; 1371acdf5bf4SSatish Balay } 1372d9d09a02SSatish Balay for (i = 0; i < nzA; i++) idx_p[imark + i] = cstart * bs + cworkA[i]; 1373d9d09a02SSatish Balay for (i = imark; i < nzB; i++) idx_p[nzA + i] = cmap[cworkB[i] / bs] * bs + cworkB[i] % bs; 1374acdf5bf4SSatish Balay } 1375d64ed03dSBarry Smith } else { 1376f4259b30SLisandro Dalcin if (idx) *idx = NULL; 1377f4259b30SLisandro Dalcin if (v) *v = NULL; 1378d212a18eSSatish Balay } 1379acdf5bf4SSatish Balay } 1380acdf5bf4SSatish Balay *nz = nztot; 13819566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->restorerow)(mat->A, lrow, &nzA, pcA, pvA)); 13829566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->restorerow)(mat->B, lrow, &nzB, pcB, pvB)); 13833ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1384acdf5bf4SSatish Balay } 1385acdf5bf4SSatish Balay 1386d71ae5a4SJacob Faibussowitsch PetscErrorCode MatRestoreRow_MPIBAIJ(Mat mat, PetscInt row, PetscInt *nz, PetscInt **idx, PetscScalar **v) 1387d71ae5a4SJacob Faibussowitsch { 1388acdf5bf4SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 1389d64ed03dSBarry Smith 1390d64ed03dSBarry Smith PetscFunctionBegin; 13915f80ce2aSJacob Faibussowitsch PetscCheck(baij->getrowactive, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "MatGetRow not called"); 1392acdf5bf4SSatish Balay baij->getrowactive = PETSC_FALSE; 13933ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1394acdf5bf4SSatish Balay } 1395acdf5bf4SSatish Balay 139666976f2fSJacob Faibussowitsch static PetscErrorCode MatZeroEntries_MPIBAIJ(Mat A) 1397d71ae5a4SJacob Faibussowitsch { 139858667388SSatish Balay Mat_MPIBAIJ *l = (Mat_MPIBAIJ *)A->data; 1399d64ed03dSBarry Smith 1400d64ed03dSBarry Smith PetscFunctionBegin; 14019566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(l->A)); 14029566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(l->B)); 14033ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 140458667388SSatish Balay } 14050ac07820SSatish Balay 140666976f2fSJacob Faibussowitsch static PetscErrorCode MatGetInfo_MPIBAIJ(Mat matin, MatInfoType flag, MatInfo *info) 1407d71ae5a4SJacob Faibussowitsch { 14084e220ebcSLois Curfman McInnes Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)matin->data; 14094e220ebcSLois Curfman McInnes Mat A = a->A, B = a->B; 14103966268fSBarry Smith PetscLogDouble isend[5], irecv[5]; 14110ac07820SSatish Balay 1412d64ed03dSBarry Smith PetscFunctionBegin; 1413d0f46423SBarry Smith info->block_size = (PetscReal)matin->rmap->bs; 141426fbe8dcSKarl Rupp 14159566063dSJacob Faibussowitsch PetscCall(MatGetInfo(A, MAT_LOCAL, info)); 141626fbe8dcSKarl Rupp 14179371c9d4SSatish Balay isend[0] = info->nz_used; 14189371c9d4SSatish Balay isend[1] = info->nz_allocated; 14199371c9d4SSatish Balay isend[2] = info->nz_unneeded; 14209371c9d4SSatish Balay isend[3] = info->memory; 14219371c9d4SSatish Balay isend[4] = info->mallocs; 142226fbe8dcSKarl Rupp 14239566063dSJacob Faibussowitsch PetscCall(MatGetInfo(B, MAT_LOCAL, info)); 142426fbe8dcSKarl Rupp 14259371c9d4SSatish Balay isend[0] += info->nz_used; 14269371c9d4SSatish Balay isend[1] += info->nz_allocated; 14279371c9d4SSatish Balay isend[2] += info->nz_unneeded; 14289371c9d4SSatish Balay isend[3] += info->memory; 14299371c9d4SSatish Balay isend[4] += info->mallocs; 143026fbe8dcSKarl Rupp 14310ac07820SSatish Balay if (flag == MAT_LOCAL) { 14324e220ebcSLois Curfman McInnes info->nz_used = isend[0]; 14334e220ebcSLois Curfman McInnes info->nz_allocated = isend[1]; 14344e220ebcSLois Curfman McInnes info->nz_unneeded = isend[2]; 14354e220ebcSLois Curfman McInnes info->memory = isend[3]; 14364e220ebcSLois Curfman McInnes info->mallocs = isend[4]; 14370ac07820SSatish Balay } else if (flag == MAT_GLOBAL_MAX) { 1438462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(isend, irecv, 5, MPIU_PETSCLOGDOUBLE, MPI_MAX, PetscObjectComm((PetscObject)matin))); 143926fbe8dcSKarl Rupp 14404e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 14414e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 14424e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 14434e220ebcSLois Curfman McInnes info->memory = irecv[3]; 14444e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 14450ac07820SSatish Balay } else if (flag == MAT_GLOBAL_SUM) { 1446462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(isend, irecv, 5, MPIU_PETSCLOGDOUBLE, MPI_SUM, PetscObjectComm((PetscObject)matin))); 144726fbe8dcSKarl Rupp 14484e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 14494e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 14504e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 14514e220ebcSLois Curfman McInnes info->memory = irecv[3]; 14524e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 145398921bdaSJacob Faibussowitsch } else SETERRQ(PetscObjectComm((PetscObject)matin), PETSC_ERR_ARG_WRONG, "Unknown MatInfoType argument %d", (int)flag); 14544e220ebcSLois Curfman McInnes info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */ 14554e220ebcSLois Curfman McInnes info->fill_ratio_needed = 0; 14564e220ebcSLois Curfman McInnes info->factor_mallocs = 0; 14573ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 14580ac07820SSatish Balay } 14590ac07820SSatish Balay 146066976f2fSJacob Faibussowitsch static PetscErrorCode MatSetOption_MPIBAIJ(Mat A, MatOption op, PetscBool flg) 1461d71ae5a4SJacob Faibussowitsch { 146258667388SSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 146358667388SSatish Balay 1464d64ed03dSBarry Smith PetscFunctionBegin; 146512c028f9SKris Buschelman switch (op) { 1466512a5fc5SBarry Smith case MAT_NEW_NONZERO_LOCATIONS: 146712c028f9SKris Buschelman case MAT_NEW_NONZERO_ALLOCATION_ERR: 146828b2fa4aSMatthew Knepley case MAT_UNUSED_NONZERO_LOCATION_ERR: 1469a9817697SBarry Smith case MAT_KEEP_NONZERO_PATTERN: 147012c028f9SKris Buschelman case MAT_NEW_NONZERO_LOCATION_ERR: 147143674050SBarry Smith MatCheckPreallocated(A, 1); 14729566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->A, op, flg)); 14739566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->B, op, flg)); 147412c028f9SKris Buschelman break; 147512c028f9SKris Buschelman case MAT_ROW_ORIENTED: 147643674050SBarry Smith MatCheckPreallocated(A, 1); 14774e0d8c25SBarry Smith a->roworiented = flg; 147826fbe8dcSKarl Rupp 14799566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->A, op, flg)); 14809566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->B, op, flg)); 148112c028f9SKris Buschelman break; 1482d71ae5a4SJacob Faibussowitsch case MAT_IGNORE_OFF_PROC_ENTRIES: 1483d71ae5a4SJacob Faibussowitsch a->donotstash = flg; 1484d71ae5a4SJacob Faibussowitsch break; 148512c028f9SKris Buschelman case MAT_USE_HASH_TABLE: 14864e0d8c25SBarry Smith a->ht_flag = flg; 1487abf3b562SBarry Smith a->ht_fact = 1.39; 148812c028f9SKris Buschelman break; 148977e54ba9SKris Buschelman case MAT_SYMMETRIC: 149077e54ba9SKris Buschelman case MAT_STRUCTURALLY_SYMMETRIC: 14912188ac68SBarry Smith case MAT_HERMITIAN: 14922188ac68SBarry Smith case MAT_SYMMETRY_ETERNAL: 1493b94d7dedSBarry Smith case MAT_STRUCTURAL_SYMMETRY_ETERNAL: 1494b94d7dedSBarry Smith case MAT_SPD_ETERNAL: 1495b94d7dedSBarry Smith /* if the diagonal matrix is square it inherits some of the properties above */ 14969725ddffSPierre Jolivet if (a->A && A->rmap->n == A->cmap->n) PetscCall(MatSetOption(a->A, op, flg)); 149777e54ba9SKris Buschelman break; 1498d71ae5a4SJacob Faibussowitsch default: 1499*888c827cSStefano Zampini break; 1500d64ed03dSBarry Smith } 15013ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 150258667388SSatish Balay } 150358667388SSatish Balay 150466976f2fSJacob Faibussowitsch static PetscErrorCode MatTranspose_MPIBAIJ(Mat A, MatReuse reuse, Mat *matout) 1505d71ae5a4SJacob Faibussowitsch { 15060ac07820SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)A->data; 15070ac07820SSatish Balay Mat_SeqBAIJ *Aloc; 15080ac07820SSatish Balay Mat B; 1509d0f46423SBarry Smith PetscInt M = A->rmap->N, N = A->cmap->N, *ai, *aj, i, *rvals, j, k, col; 1510d0f46423SBarry Smith PetscInt bs = A->rmap->bs, mbs = baij->mbs; 15113eda8832SBarry Smith MatScalar *a; 15120ac07820SSatish Balay 1513d64ed03dSBarry Smith PetscFunctionBegin; 15147fb60732SBarry Smith if (reuse == MAT_REUSE_MATRIX) PetscCall(MatTransposeCheckNonzeroState_Private(A, *matout)); 1515cf37664fSBarry Smith if (reuse == MAT_INITIAL_MATRIX || reuse == MAT_INPLACE_MATRIX) { 15169566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)A), &B)); 15179566063dSJacob Faibussowitsch PetscCall(MatSetSizes(B, A->cmap->n, A->rmap->n, N, M)); 15189566063dSJacob Faibussowitsch PetscCall(MatSetType(B, ((PetscObject)A)->type_name)); 15192e72b8d9SBarry Smith /* Do not know preallocation information, but must set block size */ 15209566063dSJacob Faibussowitsch PetscCall(MatMPIBAIJSetPreallocation(B, A->rmap->bs, PETSC_DECIDE, NULL, PETSC_DECIDE, NULL)); 1521fc4dec0aSBarry Smith } else { 1522fc4dec0aSBarry Smith B = *matout; 1523fc4dec0aSBarry Smith } 15240ac07820SSatish Balay 15250ac07820SSatish Balay /* copy over the A part */ 15260ac07820SSatish Balay Aloc = (Mat_SeqBAIJ *)baij->A->data; 15279371c9d4SSatish Balay ai = Aloc->i; 15289371c9d4SSatish Balay aj = Aloc->j; 15299371c9d4SSatish Balay a = Aloc->a; 15309566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(bs, &rvals)); 15310ac07820SSatish Balay 15320ac07820SSatish Balay for (i = 0; i < mbs; i++) { 1533899cda47SBarry Smith rvals[0] = bs * (baij->rstartbs + i); 153426fbe8dcSKarl Rupp for (j = 1; j < bs; j++) rvals[j] = rvals[j - 1] + 1; 15350ac07820SSatish Balay for (j = ai[i]; j < ai[i + 1]; j++) { 1536899cda47SBarry Smith col = (baij->cstartbs + aj[j]) * bs; 15370ac07820SSatish Balay for (k = 0; k < bs; k++) { 15389566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPIBAIJ(B, 1, &col, bs, rvals, a, INSERT_VALUES)); 153926fbe8dcSKarl Rupp 15409371c9d4SSatish Balay col++; 15419371c9d4SSatish Balay a += bs; 15420ac07820SSatish Balay } 15430ac07820SSatish Balay } 15440ac07820SSatish Balay } 15450ac07820SSatish Balay /* copy over the B part */ 15460ac07820SSatish Balay Aloc = (Mat_SeqBAIJ *)baij->B->data; 15479371c9d4SSatish Balay ai = Aloc->i; 15489371c9d4SSatish Balay aj = Aloc->j; 15499371c9d4SSatish Balay a = Aloc->a; 15500ac07820SSatish Balay for (i = 0; i < mbs; i++) { 1551899cda47SBarry Smith rvals[0] = bs * (baij->rstartbs + i); 155226fbe8dcSKarl Rupp for (j = 1; j < bs; j++) rvals[j] = rvals[j - 1] + 1; 15530ac07820SSatish Balay for (j = ai[i]; j < ai[i + 1]; j++) { 15540ac07820SSatish Balay col = baij->garray[aj[j]] * bs; 15550ac07820SSatish Balay for (k = 0; k < bs; k++) { 15569566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPIBAIJ(B, 1, &col, bs, rvals, a, INSERT_VALUES)); 155726fbe8dcSKarl Rupp col++; 155826fbe8dcSKarl Rupp a += bs; 15590ac07820SSatish Balay } 15600ac07820SSatish Balay } 15610ac07820SSatish Balay } 15629566063dSJacob Faibussowitsch PetscCall(PetscFree(rvals)); 15639566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY)); 15649566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY)); 15650ac07820SSatish Balay 1566cf37664fSBarry Smith if (reuse == MAT_INITIAL_MATRIX || reuse == MAT_REUSE_MATRIX) *matout = B; 156748a46eb9SPierre Jolivet else PetscCall(MatHeaderMerge(A, &B)); 15683ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 15690ac07820SSatish Balay } 15700e95ebc0SSatish Balay 157166976f2fSJacob Faibussowitsch static PetscErrorCode MatDiagonalScale_MPIBAIJ(Mat mat, Vec ll, Vec rr) 1572d71ae5a4SJacob Faibussowitsch { 157336c4a09eSSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 157436c4a09eSSatish Balay Mat a = baij->A, b = baij->B; 1575b24ad042SBarry Smith PetscInt s1, s2, s3; 15760e95ebc0SSatish Balay 1577d64ed03dSBarry Smith PetscFunctionBegin; 15789566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(mat, &s2, &s3)); 157936c4a09eSSatish Balay if (rr) { 15809566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(rr, &s1)); 15815f80ce2aSJacob Faibussowitsch PetscCheck(s1 == s3, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "right vector non-conforming local size"); 158236c4a09eSSatish Balay /* Overlap communication with computation. */ 15839566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(baij->Mvctx, rr, baij->lvec, INSERT_VALUES, SCATTER_FORWARD)); 158436c4a09eSSatish Balay } 15850e95ebc0SSatish Balay if (ll) { 15869566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(ll, &s1)); 15875f80ce2aSJacob Faibussowitsch PetscCheck(s1 == s2, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "left vector non-conforming local size"); 1588dbbe0bcdSBarry Smith PetscUseTypeMethod(b, diagonalscale, ll, NULL); 15890e95ebc0SSatish Balay } 159036c4a09eSSatish Balay /* scale the diagonal block */ 1591dbbe0bcdSBarry Smith PetscUseTypeMethod(a, diagonalscale, ll, rr); 159236c4a09eSSatish Balay 159336c4a09eSSatish Balay if (rr) { 159436c4a09eSSatish Balay /* Do a scatter end and then right scale the off-diagonal block */ 15959566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(baij->Mvctx, rr, baij->lvec, INSERT_VALUES, SCATTER_FORWARD)); 1596dbbe0bcdSBarry Smith PetscUseTypeMethod(b, diagonalscale, NULL, baij->lvec); 159736c4a09eSSatish Balay } 15983ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 15990e95ebc0SSatish Balay } 16000e95ebc0SSatish Balay 160166976f2fSJacob Faibussowitsch static PetscErrorCode MatZeroRows_MPIBAIJ(Mat A, PetscInt N, const PetscInt rows[], PetscScalar diag, Vec x, Vec b) 1602d71ae5a4SJacob Faibussowitsch { 16030ac07820SSatish Balay Mat_MPIBAIJ *l = (Mat_MPIBAIJ *)A->data; 160465a92638SMatthew G. Knepley PetscInt *lrows; 16056e520ac8SStefano Zampini PetscInt r, len; 160694342113SStefano Zampini PetscBool cong; 16070ac07820SSatish Balay 1608d64ed03dSBarry Smith PetscFunctionBegin; 16096e520ac8SStefano Zampini /* get locally owned rows */ 16109566063dSJacob Faibussowitsch PetscCall(MatZeroRowsMapLocal_Private(A, N, rows, &len, &lrows)); 1611dd8e379bSPierre Jolivet /* fix right-hand side if needed */ 161297b48c8fSBarry Smith if (x && b) { 161365a92638SMatthew G. Knepley const PetscScalar *xx; 161465a92638SMatthew G. Knepley PetscScalar *bb; 161565a92638SMatthew G. Knepley 16169566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(x, &xx)); 16179566063dSJacob Faibussowitsch PetscCall(VecGetArray(b, &bb)); 161865a92638SMatthew G. Knepley for (r = 0; r < len; ++r) bb[lrows[r]] = diag * xx[lrows[r]]; 16199566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(x, &xx)); 16209566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(b, &bb)); 162197b48c8fSBarry Smith } 162297b48c8fSBarry Smith 16230ac07820SSatish Balay /* actually zap the local rows */ 162472dacd9aSBarry Smith /* 162572dacd9aSBarry Smith Zero the required rows. If the "diagonal block" of the matrix 1626a8c7a070SBarry Smith is square and the user wishes to set the diagonal we use separate 162772dacd9aSBarry Smith code so that MatSetValues() is not called for each diagonal allocating 162872dacd9aSBarry Smith new memory, thus calling lots of mallocs and slowing things down. 162972dacd9aSBarry Smith 163072dacd9aSBarry Smith */ 16319c957beeSSatish Balay /* must zero l->B before l->A because the (diag) case below may put values into l->B*/ 16329566063dSJacob Faibussowitsch PetscCall(MatZeroRows_SeqBAIJ(l->B, len, lrows, 0.0, NULL, NULL)); 16339566063dSJacob Faibussowitsch PetscCall(MatHasCongruentLayouts(A, &cong)); 163494342113SStefano Zampini if ((diag != 0.0) && cong) { 16359566063dSJacob Faibussowitsch PetscCall(MatZeroRows_SeqBAIJ(l->A, len, lrows, diag, NULL, NULL)); 1636f4df32b1SMatthew Knepley } else if (diag != 0.0) { 16379566063dSJacob Faibussowitsch PetscCall(MatZeroRows_SeqBAIJ(l->A, len, lrows, 0.0, NULL, NULL)); 163800045ab3SPierre Jolivet PetscCheck(!((Mat_SeqBAIJ *)l->A->data)->nonew, PETSC_COMM_SELF, PETSC_ERR_SUP, "MatZeroRows() on rectangular matrices cannot be used with the Mat options MAT_NEW_NONZERO_LOCATIONS, MAT_NEW_NONZERO_LOCATION_ERR, and MAT_NEW_NONZERO_ALLOCATION_ERR"); 163965a92638SMatthew G. Knepley for (r = 0; r < len; ++r) { 164065a92638SMatthew G. Knepley const PetscInt row = lrows[r] + A->rmap->rstart; 16419566063dSJacob Faibussowitsch PetscCall(MatSetValues(A, 1, &row, 1, &row, &diag, INSERT_VALUES)); 1642a07cd24cSSatish Balay } 16439566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(A, MAT_FINAL_ASSEMBLY)); 16449566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(A, MAT_FINAL_ASSEMBLY)); 16459c957beeSSatish Balay } else { 16469566063dSJacob Faibussowitsch PetscCall(MatZeroRows_SeqBAIJ(l->A, len, lrows, 0.0, NULL, NULL)); 1647a07cd24cSSatish Balay } 16489566063dSJacob Faibussowitsch PetscCall(PetscFree(lrows)); 16494f9cfa9eSBarry Smith 16504f9cfa9eSBarry Smith /* only change matrix nonzero state if pattern was allowed to be changed */ 1651f4f49eeaSPierre Jolivet if (!((Mat_SeqBAIJ *)l->A->data)->keepnonzeropattern || !((Mat_SeqBAIJ *)l->A->data)->nonew) { 1652e56f5c9eSBarry Smith PetscObjectState state = l->A->nonzerostate + l->B->nonzerostate; 1653462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&state, &A->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)A))); 1654e56f5c9eSBarry Smith } 16553ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 16560ac07820SSatish Balay } 165772dacd9aSBarry Smith 165866976f2fSJacob Faibussowitsch static PetscErrorCode MatZeroRowsColumns_MPIBAIJ(Mat A, PetscInt N, const PetscInt rows[], PetscScalar diag, Vec x, Vec b) 1659d71ae5a4SJacob Faibussowitsch { 16606f0a72daSMatthew G. Knepley Mat_MPIBAIJ *l = (Mat_MPIBAIJ *)A->data; 16616497c311SBarry Smith PetscMPIInt n, p = 0; 1662131c27b5Sprj- PetscInt i, j, k, r, len = 0, row, col, count; 16636f0a72daSMatthew G. Knepley PetscInt *lrows, *owners = A->rmap->range; 16646f0a72daSMatthew G. Knepley PetscSFNode *rrows; 16656f0a72daSMatthew G. Knepley PetscSF sf; 16666f0a72daSMatthew G. Knepley const PetscScalar *xx; 16676f0a72daSMatthew G. Knepley PetscScalar *bb, *mask; 16686f0a72daSMatthew G. Knepley Vec xmask, lmask; 16696f0a72daSMatthew G. Knepley Mat_SeqBAIJ *baij = (Mat_SeqBAIJ *)l->B->data; 16706f0a72daSMatthew G. Knepley PetscInt bs = A->rmap->bs, bs2 = baij->bs2; 16716f0a72daSMatthew G. Knepley PetscScalar *aa; 16726f0a72daSMatthew G. Knepley 16736f0a72daSMatthew G. Knepley PetscFunctionBegin; 16746497c311SBarry Smith PetscCall(PetscMPIIntCast(A->rmap->n, &n)); 16756f0a72daSMatthew G. Knepley /* Create SF where leaves are input rows and roots are owned rows */ 16769566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(n, &lrows)); 16776f0a72daSMatthew G. Knepley for (r = 0; r < n; ++r) lrows[r] = -1; 16789566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(N, &rrows)); 16796f0a72daSMatthew G. Knepley for (r = 0; r < N; ++r) { 16806f0a72daSMatthew G. Knepley const PetscInt idx = rows[r]; 16815f80ce2aSJacob Faibussowitsch PetscCheck(idx >= 0 && A->rmap->N > idx, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row %" PetscInt_FMT " out of range [0,%" PetscInt_FMT ")", idx, A->rmap->N); 16825ba17502SJed Brown if (idx < owners[p] || owners[p + 1] <= idx) { /* short-circuit the search if the last p owns this row too */ 16839566063dSJacob Faibussowitsch PetscCall(PetscLayoutFindOwner(A->rmap, idx, &p)); 16845ba17502SJed Brown } 16856f0a72daSMatthew G. Knepley rrows[r].rank = p; 16866f0a72daSMatthew G. Knepley rrows[r].index = rows[r] - owners[p]; 16876f0a72daSMatthew G. Knepley } 16889566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)A), &sf)); 16899566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(sf, n, N, NULL, PETSC_OWN_POINTER, rrows, PETSC_OWN_POINTER)); 16906f0a72daSMatthew G. Knepley /* Collect flags for rows to be zeroed */ 16919566063dSJacob Faibussowitsch PetscCall(PetscSFReduceBegin(sf, MPIU_INT, (PetscInt *)rows, lrows, MPI_LOR)); 16929566063dSJacob Faibussowitsch PetscCall(PetscSFReduceEnd(sf, MPIU_INT, (PetscInt *)rows, lrows, MPI_LOR)); 16939566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&sf)); 16946f0a72daSMatthew G. Knepley /* Compress and put in row numbers */ 16959371c9d4SSatish Balay for (r = 0; r < n; ++r) 16969371c9d4SSatish Balay if (lrows[r] >= 0) lrows[len++] = r; 16976f0a72daSMatthew G. Knepley /* zero diagonal part of matrix */ 16989566063dSJacob Faibussowitsch PetscCall(MatZeroRowsColumns(l->A, len, lrows, diag, x, b)); 16994cf0e950SBarry Smith /* handle off-diagonal part of matrix */ 17009566063dSJacob Faibussowitsch PetscCall(MatCreateVecs(A, &xmask, NULL)); 17019566063dSJacob Faibussowitsch PetscCall(VecDuplicate(l->lvec, &lmask)); 17029566063dSJacob Faibussowitsch PetscCall(VecGetArray(xmask, &bb)); 17036f0a72daSMatthew G. Knepley for (i = 0; i < len; i++) bb[lrows[i]] = 1; 17049566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(xmask, &bb)); 17059566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(l->Mvctx, xmask, lmask, ADD_VALUES, SCATTER_FORWARD)); 17069566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(l->Mvctx, xmask, lmask, ADD_VALUES, SCATTER_FORWARD)); 17079566063dSJacob Faibussowitsch PetscCall(VecDestroy(&xmask)); 17086f0a72daSMatthew G. Knepley if (x) { 17099566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(l->Mvctx, x, l->lvec, INSERT_VALUES, SCATTER_FORWARD)); 17109566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(l->Mvctx, x, l->lvec, INSERT_VALUES, SCATTER_FORWARD)); 17119566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(l->lvec, &xx)); 17129566063dSJacob Faibussowitsch PetscCall(VecGetArray(b, &bb)); 17136f0a72daSMatthew G. Knepley } 17149566063dSJacob Faibussowitsch PetscCall(VecGetArray(lmask, &mask)); 17154cf0e950SBarry Smith /* remove zeroed rows of off-diagonal matrix */ 17166f0a72daSMatthew G. Knepley for (i = 0; i < len; ++i) { 17176f0a72daSMatthew G. Knepley row = lrows[i]; 17186f0a72daSMatthew G. Knepley count = (baij->i[row / bs + 1] - baij->i[row / bs]) * bs; 1719835f2295SStefano Zampini aa = baij->a + baij->i[row / bs] * bs2 + (row % bs); 17206f0a72daSMatthew G. Knepley for (k = 0; k < count; ++k) { 17216f0a72daSMatthew G. Knepley aa[0] = 0.0; 17226f0a72daSMatthew G. Knepley aa += bs; 17236f0a72daSMatthew G. Knepley } 17246f0a72daSMatthew G. Knepley } 17256f0a72daSMatthew G. Knepley /* loop over all elements of off process part of matrix zeroing removed columns*/ 17266f0a72daSMatthew G. Knepley for (i = 0; i < l->B->rmap->N; ++i) { 17276f0a72daSMatthew G. Knepley row = i / bs; 17286f0a72daSMatthew G. Knepley for (j = baij->i[row]; j < baij->i[row + 1]; ++j) { 17296f0a72daSMatthew G. Knepley for (k = 0; k < bs; ++k) { 17306f0a72daSMatthew G. Knepley col = bs * baij->j[j] + k; 17316f0a72daSMatthew G. Knepley if (PetscAbsScalar(mask[col])) { 1732835f2295SStefano Zampini aa = baij->a + j * bs2 + (i % bs) + bs * k; 173389ae1891SBarry Smith if (x) bb[i] -= aa[0] * xx[col]; 17346f0a72daSMatthew G. Knepley aa[0] = 0.0; 17356f0a72daSMatthew G. Knepley } 17366f0a72daSMatthew G. Knepley } 17376f0a72daSMatthew G. Knepley } 17386f0a72daSMatthew G. Knepley } 17396f0a72daSMatthew G. Knepley if (x) { 17409566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(b, &bb)); 17419566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(l->lvec, &xx)); 17426f0a72daSMatthew G. Knepley } 17439566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(lmask, &mask)); 17449566063dSJacob Faibussowitsch PetscCall(VecDestroy(&lmask)); 17459566063dSJacob Faibussowitsch PetscCall(PetscFree(lrows)); 17464f9cfa9eSBarry Smith 17474f9cfa9eSBarry Smith /* only change matrix nonzero state if pattern was allowed to be changed */ 1748f4f49eeaSPierre Jolivet if (!((Mat_SeqBAIJ *)l->A->data)->nonew) { 17494f9cfa9eSBarry Smith PetscObjectState state = l->A->nonzerostate + l->B->nonzerostate; 1750462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&state, &A->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)A))); 17514f9cfa9eSBarry Smith } 17523ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 17536f0a72daSMatthew G. Knepley } 17546f0a72daSMatthew G. Knepley 175566976f2fSJacob Faibussowitsch static PetscErrorCode MatSetUnfactored_MPIBAIJ(Mat A) 1756d71ae5a4SJacob Faibussowitsch { 1757bb5a7306SBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 1758d64ed03dSBarry Smith 1759d64ed03dSBarry Smith PetscFunctionBegin; 17609566063dSJacob Faibussowitsch PetscCall(MatSetUnfactored(a->A)); 17613ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1762bb5a7306SBarry Smith } 1763bb5a7306SBarry Smith 17646849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIBAIJ(Mat, MatDuplicateOption, Mat *); 17650ac07820SSatish Balay 176666976f2fSJacob Faibussowitsch static PetscErrorCode MatEqual_MPIBAIJ(Mat A, Mat B, PetscBool *flag) 1767d71ae5a4SJacob Faibussowitsch { 17687fc3c18eSBarry Smith Mat_MPIBAIJ *matB = (Mat_MPIBAIJ *)B->data, *matA = (Mat_MPIBAIJ *)A->data; 17697fc3c18eSBarry Smith Mat a, b, c, d; 1770ace3abfcSBarry Smith PetscBool flg; 17717fc3c18eSBarry Smith 17727fc3c18eSBarry Smith PetscFunctionBegin; 17739371c9d4SSatish Balay a = matA->A; 17749371c9d4SSatish Balay b = matA->B; 17759371c9d4SSatish Balay c = matB->A; 17769371c9d4SSatish Balay d = matB->B; 17777fc3c18eSBarry Smith 17789566063dSJacob Faibussowitsch PetscCall(MatEqual(a, c, &flg)); 177948a46eb9SPierre Jolivet if (flg) PetscCall(MatEqual(b, d, &flg)); 1780462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&flg, flag, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)A))); 17813ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 17827fc3c18eSBarry Smith } 17837fc3c18eSBarry Smith 178466976f2fSJacob Faibussowitsch static PetscErrorCode MatCopy_MPIBAIJ(Mat A, Mat B, MatStructure str) 1785d71ae5a4SJacob Faibussowitsch { 17863c896bc6SHong Zhang Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 17873c896bc6SHong Zhang Mat_MPIBAIJ *b = (Mat_MPIBAIJ *)B->data; 17883c896bc6SHong Zhang 17893c896bc6SHong Zhang PetscFunctionBegin; 17903c896bc6SHong Zhang /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */ 17913c896bc6SHong Zhang if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) { 17929566063dSJacob Faibussowitsch PetscCall(MatCopy_Basic(A, B, str)); 17933c896bc6SHong Zhang } else { 17949566063dSJacob Faibussowitsch PetscCall(MatCopy(a->A, b->A, str)); 17959566063dSJacob Faibussowitsch PetscCall(MatCopy(a->B, b->B, str)); 17963c896bc6SHong Zhang } 17979566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)B)); 17983ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 17993c896bc6SHong Zhang } 1800273d9f13SBarry Smith 1801d71ae5a4SJacob Faibussowitsch PetscErrorCode MatAXPYGetPreallocation_MPIBAIJ(Mat Y, const PetscInt *yltog, Mat X, const PetscInt *xltog, PetscInt *nnz) 1802d71ae5a4SJacob Faibussowitsch { 1803001ddc4fSHong Zhang PetscInt bs = Y->rmap->bs, m = Y->rmap->N / bs; 18044de5dceeSHong Zhang Mat_SeqBAIJ *x = (Mat_SeqBAIJ *)X->data; 18054de5dceeSHong Zhang Mat_SeqBAIJ *y = (Mat_SeqBAIJ *)Y->data; 18064de5dceeSHong Zhang 18074de5dceeSHong Zhang PetscFunctionBegin; 18089566063dSJacob Faibussowitsch PetscCall(MatAXPYGetPreallocation_MPIX_private(m, x->i, x->j, xltog, y->i, y->j, yltog, nnz)); 18093ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 18104de5dceeSHong Zhang } 18114de5dceeSHong Zhang 181266976f2fSJacob Faibussowitsch static PetscErrorCode MatAXPY_MPIBAIJ(Mat Y, PetscScalar a, Mat X, MatStructure str) 1813d71ae5a4SJacob Faibussowitsch { 18144fe895cdSHong Zhang Mat_MPIBAIJ *xx = (Mat_MPIBAIJ *)X->data, *yy = (Mat_MPIBAIJ *)Y->data; 18154fe895cdSHong Zhang PetscBLASInt bnz, one = 1; 18164fe895cdSHong Zhang Mat_SeqBAIJ *x, *y; 1817b31f67cfSBarry Smith PetscInt bs2 = Y->rmap->bs * Y->rmap->bs; 18184fe895cdSHong Zhang 18194fe895cdSHong Zhang PetscFunctionBegin; 18204fe895cdSHong Zhang if (str == SAME_NONZERO_PATTERN) { 18214fe895cdSHong Zhang PetscScalar alpha = a; 18224fe895cdSHong Zhang x = (Mat_SeqBAIJ *)xx->A->data; 18234fe895cdSHong Zhang y = (Mat_SeqBAIJ *)yy->A->data; 18249566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(x->nz * bs2, &bnz)); 1825792fecdfSBarry Smith PetscCallBLAS("BLASaxpy", BLASaxpy_(&bnz, &alpha, x->a, &one, y->a, &one)); 18264fe895cdSHong Zhang x = (Mat_SeqBAIJ *)xx->B->data; 18274fe895cdSHong Zhang y = (Mat_SeqBAIJ *)yy->B->data; 18289566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(x->nz * bs2, &bnz)); 1829792fecdfSBarry Smith PetscCallBLAS("BLASaxpy", BLASaxpy_(&bnz, &alpha, x->a, &one, y->a, &one)); 18309566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)Y)); 1831ab784542SHong Zhang } else if (str == SUBSET_NONZERO_PATTERN) { /* nonzeros of X is a subset of Y's */ 18329566063dSJacob Faibussowitsch PetscCall(MatAXPY_Basic(Y, a, X, str)); 18334fe895cdSHong Zhang } else { 18344de5dceeSHong Zhang Mat B; 18354de5dceeSHong Zhang PetscInt *nnz_d, *nnz_o, bs = Y->rmap->bs; 18369566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(yy->A->rmap->N, &nnz_d)); 18379566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(yy->B->rmap->N, &nnz_o)); 18389566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)Y), &B)); 18399566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)B, ((PetscObject)Y)->name)); 18409566063dSJacob Faibussowitsch PetscCall(MatSetSizes(B, Y->rmap->n, Y->cmap->n, Y->rmap->N, Y->cmap->N)); 18419566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizesFromMats(B, Y, Y)); 18429566063dSJacob Faibussowitsch PetscCall(MatSetType(B, MATMPIBAIJ)); 18439566063dSJacob Faibussowitsch PetscCall(MatAXPYGetPreallocation_SeqBAIJ(yy->A, xx->A, nnz_d)); 18449566063dSJacob Faibussowitsch PetscCall(MatAXPYGetPreallocation_MPIBAIJ(yy->B, yy->garray, xx->B, xx->garray, nnz_o)); 18459566063dSJacob Faibussowitsch PetscCall(MatMPIBAIJSetPreallocation(B, bs, 0, nnz_d, 0, nnz_o)); 18464de5dceeSHong Zhang /* MatAXPY_BasicWithPreallocation() for BAIJ matrix is much slower than AIJ, even for bs=1 ! */ 18479566063dSJacob Faibussowitsch PetscCall(MatAXPY_BasicWithPreallocation(B, Y, a, X, str)); 18489566063dSJacob Faibussowitsch PetscCall(MatHeaderMerge(Y, &B)); 18499566063dSJacob Faibussowitsch PetscCall(PetscFree(nnz_d)); 18509566063dSJacob Faibussowitsch PetscCall(PetscFree(nnz_o)); 18514fe895cdSHong Zhang } 18523ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 18534fe895cdSHong Zhang } 18544fe895cdSHong Zhang 185566976f2fSJacob Faibussowitsch static PetscErrorCode MatConjugate_MPIBAIJ(Mat mat) 1856d71ae5a4SJacob Faibussowitsch { 18575f80ce2aSJacob Faibussowitsch PetscFunctionBegin; 18585f80ce2aSJacob Faibussowitsch if (PetscDefined(USE_COMPLEX)) { 18592726fb6dSPierre Jolivet Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)mat->data; 18602726fb6dSPierre Jolivet 18619566063dSJacob Faibussowitsch PetscCall(MatConjugate_SeqBAIJ(a->A)); 18629566063dSJacob Faibussowitsch PetscCall(MatConjugate_SeqBAIJ(a->B)); 18635f80ce2aSJacob Faibussowitsch } 18643ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 18652726fb6dSPierre Jolivet } 18662726fb6dSPierre Jolivet 186766976f2fSJacob Faibussowitsch static PetscErrorCode MatRealPart_MPIBAIJ(Mat A) 1868d71ae5a4SJacob Faibussowitsch { 186999cafbc1SBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 187099cafbc1SBarry Smith 187199cafbc1SBarry Smith PetscFunctionBegin; 18729566063dSJacob Faibussowitsch PetscCall(MatRealPart(a->A)); 18739566063dSJacob Faibussowitsch PetscCall(MatRealPart(a->B)); 18743ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 187599cafbc1SBarry Smith } 187699cafbc1SBarry Smith 187766976f2fSJacob Faibussowitsch static PetscErrorCode MatImaginaryPart_MPIBAIJ(Mat A) 1878d71ae5a4SJacob Faibussowitsch { 187999cafbc1SBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 188099cafbc1SBarry Smith 188199cafbc1SBarry Smith PetscFunctionBegin; 18829566063dSJacob Faibussowitsch PetscCall(MatImaginaryPart(a->A)); 18839566063dSJacob Faibussowitsch PetscCall(MatImaginaryPart(a->B)); 18843ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 188599cafbc1SBarry Smith } 188699cafbc1SBarry Smith 188766976f2fSJacob Faibussowitsch static PetscErrorCode MatCreateSubMatrix_MPIBAIJ(Mat mat, IS isrow, IS iscol, MatReuse call, Mat *newmat) 1888d71ae5a4SJacob Faibussowitsch { 18894aa3045dSJed Brown IS iscol_local; 18904aa3045dSJed Brown PetscInt csize; 18914aa3045dSJed Brown 18924aa3045dSJed Brown PetscFunctionBegin; 18939566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol, &csize)); 1894b79d0421SJed Brown if (call == MAT_REUSE_MATRIX) { 18959566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*newmat, "ISAllGather", (PetscObject *)&iscol_local)); 18965f80ce2aSJacob Faibussowitsch PetscCheck(iscol_local, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Submatrix passed in was not used before, cannot reuse"); 1897b79d0421SJed Brown } else { 18989566063dSJacob Faibussowitsch PetscCall(ISAllGather(iscol, &iscol_local)); 1899b79d0421SJed Brown } 1900fdfbdca6SPierre Jolivet PetscCall(MatCreateSubMatrix_MPIBAIJ_Private(mat, isrow, iscol_local, csize, call, newmat, PETSC_FALSE)); 1901b79d0421SJed Brown if (call == MAT_INITIAL_MATRIX) { 19029566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)*newmat, "ISAllGather", (PetscObject)iscol_local)); 19039566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscol_local)); 1904b79d0421SJed Brown } 19053ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 19064aa3045dSJed Brown } 190717df9f7cSHong Zhang 190882094794SBarry Smith /* 190982094794SBarry Smith Not great since it makes two copies of the submatrix, first an SeqBAIJ 191082094794SBarry Smith in local and then by concatenating the local matrices the end result. 19117dae84e0SHong Zhang Writing it directly would be much like MatCreateSubMatrices_MPIBAIJ(). 19128f46ffcaSHong Zhang This routine is used for BAIJ and SBAIJ matrices (unfortunate dependency). 191382094794SBarry Smith */ 1914fdfbdca6SPierre Jolivet PetscErrorCode MatCreateSubMatrix_MPIBAIJ_Private(Mat mat, IS isrow, IS iscol, PetscInt csize, MatReuse call, Mat *newmat, PetscBool sym) 1915d71ae5a4SJacob Faibussowitsch { 191682094794SBarry Smith PetscMPIInt rank, size; 191782094794SBarry Smith PetscInt i, m, n, rstart, row, rend, nz, *cwork, j, bs; 1918c9ffca76SHong Zhang PetscInt *ii, *jj, nlocal, *dlens, *olens, dlen, olen, jend, mglobal; 191929dcf524SDmitry Karpeev Mat M, Mreuse; 192082094794SBarry Smith MatScalar *vwork, *aa; 1921ce94432eSBarry Smith MPI_Comm comm; 192229dcf524SDmitry Karpeev IS isrow_new, iscol_new; 192382094794SBarry Smith Mat_SeqBAIJ *aij; 192482094794SBarry Smith 192582094794SBarry Smith PetscFunctionBegin; 19269566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)mat, &comm)); 19279566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 19289566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 192929dcf524SDmitry Karpeev /* The compression and expansion should be avoided. Doesn't point 193029dcf524SDmitry Karpeev out errors, might change the indices, hence buggey */ 19319566063dSJacob Faibussowitsch PetscCall(ISCompressIndicesGeneral(mat->rmap->N, mat->rmap->n, mat->rmap->bs, 1, &isrow, &isrow_new)); 1932864bd19bSPierre Jolivet if (isrow == iscol) { 1933864bd19bSPierre Jolivet iscol_new = isrow_new; 1934864bd19bSPierre Jolivet PetscCall(PetscObjectReference((PetscObject)iscol_new)); 1935864bd19bSPierre Jolivet } else PetscCall(ISCompressIndicesGeneral(mat->cmap->N, mat->cmap->n, mat->cmap->bs, 1, &iscol, &iscol_new)); 193682094794SBarry Smith 193782094794SBarry Smith if (call == MAT_REUSE_MATRIX) { 19389566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*newmat, "SubMatrix", (PetscObject *)&Mreuse)); 19395f80ce2aSJacob Faibussowitsch PetscCheck(Mreuse, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Submatrix passed in was not used before, cannot reuse"); 1940fdfbdca6SPierre Jolivet PetscCall(MatCreateSubMatrices_MPIBAIJ_local(mat, 1, &isrow_new, &iscol_new, MAT_REUSE_MATRIX, &Mreuse, sym)); 194182094794SBarry Smith } else { 1942fdfbdca6SPierre Jolivet PetscCall(MatCreateSubMatrices_MPIBAIJ_local(mat, 1, &isrow_new, &iscol_new, MAT_INITIAL_MATRIX, &Mreuse, sym)); 194382094794SBarry Smith } 19449566063dSJacob Faibussowitsch PetscCall(ISDestroy(&isrow_new)); 19459566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscol_new)); 194682094794SBarry Smith /* 194782094794SBarry Smith m - number of local rows 194882094794SBarry Smith n - number of columns (same on all processors) 194982094794SBarry Smith rstart - first row in new global matrix generated 195082094794SBarry Smith */ 19519566063dSJacob Faibussowitsch PetscCall(MatGetBlockSize(mat, &bs)); 19529566063dSJacob Faibussowitsch PetscCall(MatGetSize(Mreuse, &m, &n)); 195382094794SBarry Smith m = m / bs; 195482094794SBarry Smith n = n / bs; 195582094794SBarry Smith 195682094794SBarry Smith if (call == MAT_INITIAL_MATRIX) { 195757508eceSPierre Jolivet aij = (Mat_SeqBAIJ *)Mreuse->data; 195882094794SBarry Smith ii = aij->i; 195982094794SBarry Smith jj = aij->j; 196082094794SBarry Smith 196182094794SBarry Smith /* 196282094794SBarry Smith Determine the number of non-zeros in the diagonal and off-diagonal 196382094794SBarry Smith portions of the matrix in order to do correct preallocation 196482094794SBarry Smith */ 196582094794SBarry Smith 196682094794SBarry Smith /* first get start and end of "diagonal" columns */ 196782094794SBarry Smith if (csize == PETSC_DECIDE) { 19689566063dSJacob Faibussowitsch PetscCall(ISGetSize(isrow, &mglobal)); 196982094794SBarry Smith if (mglobal == n * bs) { /* square matrix */ 197082094794SBarry Smith nlocal = m; 197182094794SBarry Smith } else { 197282094794SBarry Smith nlocal = n / size + ((n % size) > rank); 197382094794SBarry Smith } 197482094794SBarry Smith } else { 197582094794SBarry Smith nlocal = csize / bs; 197682094794SBarry Smith } 19779566063dSJacob Faibussowitsch PetscCallMPI(MPI_Scan(&nlocal, &rend, 1, MPIU_INT, MPI_SUM, comm)); 197882094794SBarry Smith rstart = rend - nlocal; 1979aed4548fSBarry Smith PetscCheck(rank != size - 1 || rend == n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Local column sizes %" PetscInt_FMT " do not add up to total number of columns %" PetscInt_FMT, rend, n); 198082094794SBarry Smith 198182094794SBarry Smith /* next, compute all the lengths */ 19829566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(m + 1, &dlens, m + 1, &olens)); 198382094794SBarry Smith for (i = 0; i < m; i++) { 198482094794SBarry Smith jend = ii[i + 1] - ii[i]; 198582094794SBarry Smith olen = 0; 198682094794SBarry Smith dlen = 0; 198782094794SBarry Smith for (j = 0; j < jend; j++) { 198882094794SBarry Smith if (*jj < rstart || *jj >= rend) olen++; 198982094794SBarry Smith else dlen++; 199082094794SBarry Smith jj++; 199182094794SBarry Smith } 199282094794SBarry Smith olens[i] = olen; 199382094794SBarry Smith dlens[i] = dlen; 199482094794SBarry Smith } 19959566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, &M)); 19969566063dSJacob Faibussowitsch PetscCall(MatSetSizes(M, bs * m, bs * nlocal, PETSC_DECIDE, bs * n)); 1997fdfbdca6SPierre Jolivet PetscCall(MatSetType(M, sym ? ((PetscObject)mat)->type_name : MATMPIBAIJ)); 19989566063dSJacob Faibussowitsch PetscCall(MatMPIBAIJSetPreallocation(M, bs, 0, dlens, 0, olens)); 19999566063dSJacob Faibussowitsch PetscCall(MatMPISBAIJSetPreallocation(M, bs, 0, dlens, 0, olens)); 20009566063dSJacob Faibussowitsch PetscCall(PetscFree2(dlens, olens)); 200182094794SBarry Smith } else { 200282094794SBarry Smith PetscInt ml, nl; 200382094794SBarry Smith 200482094794SBarry Smith M = *newmat; 20059566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(M, &ml, &nl)); 20065f80ce2aSJacob Faibussowitsch PetscCheck(ml == m, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Previous matrix must be same size/layout as request"); 20079566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(M)); 200882094794SBarry Smith /* 200982094794SBarry Smith The next two lines are needed so we may call MatSetValues_MPIAIJ() below directly, 201082094794SBarry Smith rather than the slower MatSetValues(). 201182094794SBarry Smith */ 201282094794SBarry Smith M->was_assembled = PETSC_TRUE; 201382094794SBarry Smith M->assembled = PETSC_FALSE; 201482094794SBarry Smith } 20159566063dSJacob Faibussowitsch PetscCall(MatSetOption(M, MAT_ROW_ORIENTED, PETSC_FALSE)); 20169566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(M, &rstart, &rend)); 201757508eceSPierre Jolivet aij = (Mat_SeqBAIJ *)Mreuse->data; 201882094794SBarry Smith ii = aij->i; 201982094794SBarry Smith jj = aij->j; 202082094794SBarry Smith aa = aij->a; 202182094794SBarry Smith for (i = 0; i < m; i++) { 202282094794SBarry Smith row = rstart / bs + i; 202382094794SBarry Smith nz = ii[i + 1] - ii[i]; 20249371c9d4SSatish Balay cwork = jj; 20258e3a54c0SPierre Jolivet jj = PetscSafePointerPlusOffset(jj, nz); 20269371c9d4SSatish Balay vwork = aa; 20278e3a54c0SPierre Jolivet aa = PetscSafePointerPlusOffset(aa, nz * bs * bs); 20289566063dSJacob Faibussowitsch PetscCall(MatSetValuesBlocked_MPIBAIJ(M, 1, &row, nz, cwork, vwork, INSERT_VALUES)); 202982094794SBarry Smith } 203082094794SBarry Smith 20319566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(M, MAT_FINAL_ASSEMBLY)); 20329566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(M, MAT_FINAL_ASSEMBLY)); 203382094794SBarry Smith *newmat = M; 203482094794SBarry Smith 203582094794SBarry Smith /* save submatrix used in processor for next request */ 203682094794SBarry Smith if (call == MAT_INITIAL_MATRIX) { 20379566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)M, "SubMatrix", (PetscObject)Mreuse)); 20389566063dSJacob Faibussowitsch PetscCall(PetscObjectDereference((PetscObject)Mreuse)); 203982094794SBarry Smith } 20403ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 204182094794SBarry Smith } 204282094794SBarry Smith 204366976f2fSJacob Faibussowitsch static PetscErrorCode MatPermute_MPIBAIJ(Mat A, IS rowp, IS colp, Mat *B) 2044d71ae5a4SJacob Faibussowitsch { 204582094794SBarry Smith MPI_Comm comm, pcomm; 2046a0a83eb5SRémi Lacroix PetscInt clocal_size, nrows; 204782094794SBarry Smith const PetscInt *rows; 2048dbf0e21dSBarry Smith PetscMPIInt size; 2049a0a83eb5SRémi Lacroix IS crowp, lcolp; 205082094794SBarry Smith 205182094794SBarry Smith PetscFunctionBegin; 20529566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)A, &comm)); 205382094794SBarry Smith /* make a collective version of 'rowp' */ 20549566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)rowp, &pcomm)); 205582094794SBarry Smith if (pcomm == comm) { 205682094794SBarry Smith crowp = rowp; 205782094794SBarry Smith } else { 20589566063dSJacob Faibussowitsch PetscCall(ISGetSize(rowp, &nrows)); 20599566063dSJacob Faibussowitsch PetscCall(ISGetIndices(rowp, &rows)); 20609566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(comm, nrows, rows, PETSC_COPY_VALUES, &crowp)); 20619566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(rowp, &rows)); 206282094794SBarry Smith } 20639566063dSJacob Faibussowitsch PetscCall(ISSetPermutation(crowp)); 2064a0a83eb5SRémi Lacroix /* make a local version of 'colp' */ 20659566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)colp, &pcomm)); 20669566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(pcomm, &size)); 2067dbf0e21dSBarry Smith if (size == 1) { 206882094794SBarry Smith lcolp = colp; 206982094794SBarry Smith } else { 20709566063dSJacob Faibussowitsch PetscCall(ISAllGather(colp, &lcolp)); 207182094794SBarry Smith } 20729566063dSJacob Faibussowitsch PetscCall(ISSetPermutation(lcolp)); 207375f6568bSJed Brown /* now we just get the submatrix */ 20749566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(A, NULL, &clocal_size)); 2075fdfbdca6SPierre Jolivet PetscCall(MatCreateSubMatrix_MPIBAIJ_Private(A, crowp, lcolp, clocal_size, MAT_INITIAL_MATRIX, B, PETSC_FALSE)); 2076a0a83eb5SRémi Lacroix /* clean up */ 207748a46eb9SPierre Jolivet if (pcomm != comm) PetscCall(ISDestroy(&crowp)); 207848a46eb9SPierre Jolivet if (size > 1) PetscCall(ISDestroy(&lcolp)); 20793ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 208082094794SBarry Smith } 208182094794SBarry Smith 208266976f2fSJacob Faibussowitsch static PetscErrorCode MatGetGhosts_MPIBAIJ(Mat mat, PetscInt *nghosts, const PetscInt *ghosts[]) 2083d71ae5a4SJacob Faibussowitsch { 20848c7482ecSBarry Smith Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 20858c7482ecSBarry Smith Mat_SeqBAIJ *B = (Mat_SeqBAIJ *)baij->B->data; 20868c7482ecSBarry Smith 20878c7482ecSBarry Smith PetscFunctionBegin; 208826fbe8dcSKarl Rupp if (nghosts) *nghosts = B->nbs; 208926fbe8dcSKarl Rupp if (ghosts) *ghosts = baij->garray; 20903ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 20918c7482ecSBarry Smith } 20928c7482ecSBarry Smith 209366976f2fSJacob Faibussowitsch static PetscErrorCode MatGetSeqNonzeroStructure_MPIBAIJ(Mat A, Mat *newmat) 2094d71ae5a4SJacob Faibussowitsch { 2095f6d58c54SBarry Smith Mat B; 2096f6d58c54SBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 2097f6d58c54SBarry Smith Mat_SeqBAIJ *ad = (Mat_SeqBAIJ *)a->A->data, *bd = (Mat_SeqBAIJ *)a->B->data; 2098f6d58c54SBarry Smith Mat_SeqAIJ *b; 2099f4259b30SLisandro Dalcin PetscMPIInt size, rank, *recvcounts = NULL, *displs = NULL; 2100f6d58c54SBarry Smith PetscInt sendcount, i, *rstarts = A->rmap->range, n, cnt, j, bs = A->rmap->bs; 2101f6d58c54SBarry Smith PetscInt m, *garray = a->garray, *lens, *jsendbuf, *a_jsendbuf, *b_jsendbuf; 2102f6d58c54SBarry Smith 2103f6d58c54SBarry Smith PetscFunctionBegin; 21049566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)A), &size)); 21059566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)A), &rank)); 2106f6d58c54SBarry Smith 21072ef1f0ffSBarry Smith /* Tell every processor the number of nonzeros per row */ 21089566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(A->rmap->N / bs, &lens)); 2109ad540459SPierre Jolivet for (i = A->rmap->rstart / bs; i < A->rmap->rend / bs; i++) lens[i] = ad->i[i - A->rmap->rstart / bs + 1] - ad->i[i - A->rmap->rstart / bs] + bd->i[i - A->rmap->rstart / bs + 1] - bd->i[i - A->rmap->rstart / bs]; 21109566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(2 * size, &recvcounts)); 2111f6d58c54SBarry Smith displs = recvcounts + size; 2112f6d58c54SBarry Smith for (i = 0; i < size; i++) { 21136497c311SBarry Smith PetscCall(PetscMPIIntCast(A->rmap->range[i + 1] / bs - A->rmap->range[i] / bs, &recvcounts[i])); 21146497c311SBarry Smith PetscCall(PetscMPIIntCast(A->rmap->range[i] / bs, &displs[i])); 2115f6d58c54SBarry Smith } 21169566063dSJacob Faibussowitsch PetscCallMPI(MPI_Allgatherv(MPI_IN_PLACE, 0, MPI_DATATYPE_NULL, lens, recvcounts, displs, MPIU_INT, PetscObjectComm((PetscObject)A))); 21172ef1f0ffSBarry Smith /* Create the sequential matrix of the same type as the local block diagonal */ 21189566063dSJacob Faibussowitsch PetscCall(MatCreate(PETSC_COMM_SELF, &B)); 21199566063dSJacob Faibussowitsch PetscCall(MatSetSizes(B, A->rmap->N / bs, A->cmap->N / bs, PETSC_DETERMINE, PETSC_DETERMINE)); 21209566063dSJacob Faibussowitsch PetscCall(MatSetType(B, MATSEQAIJ)); 21219566063dSJacob Faibussowitsch PetscCall(MatSeqAIJSetPreallocation(B, 0, lens)); 2122f6d58c54SBarry Smith b = (Mat_SeqAIJ *)B->data; 2123f6d58c54SBarry Smith 21242ef1f0ffSBarry Smith /* Copy my part of matrix column indices over */ 2125f6d58c54SBarry Smith sendcount = ad->nz + bd->nz; 2126f6d58c54SBarry Smith jsendbuf = b->j + b->i[rstarts[rank] / bs]; 2127f6d58c54SBarry Smith a_jsendbuf = ad->j; 2128f6d58c54SBarry Smith b_jsendbuf = bd->j; 2129f6d58c54SBarry Smith n = A->rmap->rend / bs - A->rmap->rstart / bs; 2130f6d58c54SBarry Smith cnt = 0; 2131f6d58c54SBarry Smith for (i = 0; i < n; i++) { 2132f6d58c54SBarry Smith /* put in lower diagonal portion */ 2133f6d58c54SBarry Smith m = bd->i[i + 1] - bd->i[i]; 2134f6d58c54SBarry Smith while (m > 0) { 2135f6d58c54SBarry Smith /* is it above diagonal (in bd (compressed) numbering) */ 2136f6d58c54SBarry Smith if (garray[*b_jsendbuf] > A->rmap->rstart / bs + i) break; 2137f6d58c54SBarry Smith jsendbuf[cnt++] = garray[*b_jsendbuf++]; 2138f6d58c54SBarry Smith m--; 2139f6d58c54SBarry Smith } 2140f6d58c54SBarry Smith 2141f6d58c54SBarry Smith /* put in diagonal portion */ 2142ad540459SPierre Jolivet for (j = ad->i[i]; j < ad->i[i + 1]; j++) jsendbuf[cnt++] = A->rmap->rstart / bs + *a_jsendbuf++; 2143f6d58c54SBarry Smith 2144f6d58c54SBarry Smith /* put in upper diagonal portion */ 2145ad540459SPierre Jolivet while (m-- > 0) jsendbuf[cnt++] = garray[*b_jsendbuf++]; 2146f6d58c54SBarry Smith } 21475f80ce2aSJacob Faibussowitsch PetscCheck(cnt == sendcount, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Corrupted PETSc matrix: nz given %" PetscInt_FMT " actual nz %" PetscInt_FMT, sendcount, cnt); 2148f6d58c54SBarry Smith 21492ef1f0ffSBarry Smith /* Gather all column indices to all processors */ 2150f6d58c54SBarry Smith for (i = 0; i < size; i++) { 2151f6d58c54SBarry Smith recvcounts[i] = 0; 2152ad540459SPierre Jolivet for (j = A->rmap->range[i] / bs; j < A->rmap->range[i + 1] / bs; j++) recvcounts[i] += lens[j]; 2153f6d58c54SBarry Smith } 2154f6d58c54SBarry Smith displs[0] = 0; 2155ad540459SPierre Jolivet for (i = 1; i < size; i++) displs[i] = displs[i - 1] + recvcounts[i - 1]; 21569566063dSJacob Faibussowitsch PetscCallMPI(MPI_Allgatherv(MPI_IN_PLACE, 0, MPI_DATATYPE_NULL, b->j, recvcounts, displs, MPIU_INT, PetscObjectComm((PetscObject)A))); 21575804573cSPierre Jolivet /* Assemble the matrix into usable form (note numerical values not yet set) */ 2158f6d58c54SBarry Smith /* set the b->ilen (length of each row) values */ 21599566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(b->ilen, lens, A->rmap->N / bs)); 2160f6d58c54SBarry Smith /* set the b->i indices */ 2161f6d58c54SBarry Smith b->i[0] = 0; 2162ad540459SPierre Jolivet for (i = 1; i <= A->rmap->N / bs; i++) b->i[i] = b->i[i - 1] + lens[i - 1]; 21639566063dSJacob Faibussowitsch PetscCall(PetscFree(lens)); 21649566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY)); 21659566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY)); 21669566063dSJacob Faibussowitsch PetscCall(PetscFree(recvcounts)); 2167f6d58c54SBarry Smith 2168b94d7dedSBarry Smith PetscCall(MatPropagateSymmetryOptions(A, B)); 2169f6d58c54SBarry Smith *newmat = B; 21703ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2171f6d58c54SBarry Smith } 2172f6d58c54SBarry Smith 217366976f2fSJacob Faibussowitsch static PetscErrorCode MatSOR_MPIBAIJ(Mat matin, Vec bb, PetscReal omega, MatSORType flag, PetscReal fshift, PetscInt its, PetscInt lits, Vec xx) 2174d71ae5a4SJacob Faibussowitsch { 2175b1a666ecSBarry Smith Mat_MPIBAIJ *mat = (Mat_MPIBAIJ *)matin->data; 2176f4259b30SLisandro Dalcin Vec bb1 = NULL; 2177b1a666ecSBarry Smith 2178b1a666ecSBarry Smith PetscFunctionBegin; 2179b1a666ecSBarry Smith if (flag == SOR_APPLY_UPPER) { 21809566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx)); 21813ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2182b1a666ecSBarry Smith } 2183b1a666ecSBarry Smith 218448a46eb9SPierre Jolivet if (its > 1 || ~flag & SOR_ZERO_INITIAL_GUESS) PetscCall(VecDuplicate(bb, &bb1)); 21854e980039SJed Brown 2186b1a666ecSBarry Smith if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP) { 2187b1a666ecSBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 21889566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx)); 2189b1a666ecSBarry Smith its--; 2190b1a666ecSBarry Smith } 2191b1a666ecSBarry Smith 2192b1a666ecSBarry Smith while (its--) { 21939566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 21949566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 2195b1a666ecSBarry Smith 2196b1a666ecSBarry Smith /* update rhs: bb1 = bb - B*x */ 21979566063dSJacob Faibussowitsch PetscCall(VecScale(mat->lvec, -1.0)); 21989566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->multadd)(mat->B, mat->lvec, bb, bb1)); 2199b1a666ecSBarry Smith 2200b1a666ecSBarry Smith /* local sweep */ 22019566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, SOR_SYMMETRIC_SWEEP, fshift, lits, 1, xx)); 2202b1a666ecSBarry Smith } 2203b1a666ecSBarry Smith } else if (flag & SOR_LOCAL_FORWARD_SWEEP) { 2204b1a666ecSBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 22059566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx)); 2206b1a666ecSBarry Smith its--; 2207b1a666ecSBarry Smith } 2208b1a666ecSBarry Smith while (its--) { 22099566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 22109566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 2211b1a666ecSBarry Smith 2212b1a666ecSBarry Smith /* update rhs: bb1 = bb - B*x */ 22139566063dSJacob Faibussowitsch PetscCall(VecScale(mat->lvec, -1.0)); 22149566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->multadd)(mat->B, mat->lvec, bb, bb1)); 2215b1a666ecSBarry Smith 2216b1a666ecSBarry Smith /* local sweep */ 22179566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, SOR_FORWARD_SWEEP, fshift, lits, 1, xx)); 2218b1a666ecSBarry Smith } 2219b1a666ecSBarry Smith } else if (flag & SOR_LOCAL_BACKWARD_SWEEP) { 2220b1a666ecSBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 22219566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx)); 2222b1a666ecSBarry Smith its--; 2223b1a666ecSBarry Smith } 2224b1a666ecSBarry Smith while (its--) { 22259566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 22269566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 2227b1a666ecSBarry Smith 2228b1a666ecSBarry Smith /* update rhs: bb1 = bb - B*x */ 22299566063dSJacob Faibussowitsch PetscCall(VecScale(mat->lvec, -1.0)); 22309566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->multadd)(mat->B, mat->lvec, bb, bb1)); 2231b1a666ecSBarry Smith 2232b1a666ecSBarry Smith /* local sweep */ 22339566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, SOR_BACKWARD_SWEEP, fshift, lits, 1, xx)); 2234b1a666ecSBarry Smith } 2235ce94432eSBarry Smith } else SETERRQ(PetscObjectComm((PetscObject)matin), PETSC_ERR_SUP, "Parallel version of SOR requested not supported"); 2236b1a666ecSBarry Smith 22379566063dSJacob Faibussowitsch PetscCall(VecDestroy(&bb1)); 22383ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2239b1a666ecSBarry Smith } 2240b1a666ecSBarry Smith 224166976f2fSJacob Faibussowitsch static PetscErrorCode MatGetColumnReductions_MPIBAIJ(Mat A, PetscInt type, PetscReal *reductions) 2242d71ae5a4SJacob Faibussowitsch { 224347f7623dSRémi Lacroix Mat_MPIBAIJ *aij = (Mat_MPIBAIJ *)A->data; 2244a873a8cdSSam Reynolds PetscInt m, N, i, *garray = aij->garray; 224547f7623dSRémi Lacroix PetscInt ib, jb, bs = A->rmap->bs; 224647f7623dSRémi Lacroix Mat_SeqBAIJ *a_aij = (Mat_SeqBAIJ *)aij->A->data; 224747f7623dSRémi Lacroix MatScalar *a_val = a_aij->a; 224847f7623dSRémi Lacroix Mat_SeqBAIJ *b_aij = (Mat_SeqBAIJ *)aij->B->data; 224947f7623dSRémi Lacroix MatScalar *b_val = b_aij->a; 225047f7623dSRémi Lacroix PetscReal *work; 225147f7623dSRémi Lacroix 225247f7623dSRémi Lacroix PetscFunctionBegin; 22539566063dSJacob Faibussowitsch PetscCall(MatGetSize(A, &m, &N)); 22549566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(N, &work)); 2255857cbf51SRichard Tran Mills if (type == NORM_2) { 225647f7623dSRémi Lacroix for (i = a_aij->i[0]; i < a_aij->i[aij->A->rmap->n / bs]; i++) { 225747f7623dSRémi Lacroix for (jb = 0; jb < bs; jb++) { 225847f7623dSRémi Lacroix for (ib = 0; ib < bs; ib++) { 225947f7623dSRémi Lacroix work[A->cmap->rstart + a_aij->j[i] * bs + jb] += PetscAbsScalar(*a_val * *a_val); 226047f7623dSRémi Lacroix a_val++; 226147f7623dSRémi Lacroix } 226247f7623dSRémi Lacroix } 226347f7623dSRémi Lacroix } 226447f7623dSRémi Lacroix for (i = b_aij->i[0]; i < b_aij->i[aij->B->rmap->n / bs]; i++) { 226547f7623dSRémi Lacroix for (jb = 0; jb < bs; jb++) { 226647f7623dSRémi Lacroix for (ib = 0; ib < bs; ib++) { 226747f7623dSRémi Lacroix work[garray[b_aij->j[i]] * bs + jb] += PetscAbsScalar(*b_val * *b_val); 226847f7623dSRémi Lacroix b_val++; 226947f7623dSRémi Lacroix } 227047f7623dSRémi Lacroix } 227147f7623dSRémi Lacroix } 2272857cbf51SRichard Tran Mills } else if (type == NORM_1) { 227347f7623dSRémi Lacroix for (i = a_aij->i[0]; i < a_aij->i[aij->A->rmap->n / bs]; i++) { 227447f7623dSRémi Lacroix for (jb = 0; jb < bs; jb++) { 227547f7623dSRémi Lacroix for (ib = 0; ib < bs; ib++) { 227647f7623dSRémi Lacroix work[A->cmap->rstart + a_aij->j[i] * bs + jb] += PetscAbsScalar(*a_val); 227747f7623dSRémi Lacroix a_val++; 227847f7623dSRémi Lacroix } 227947f7623dSRémi Lacroix } 228047f7623dSRémi Lacroix } 228147f7623dSRémi Lacroix for (i = b_aij->i[0]; i < b_aij->i[aij->B->rmap->n / bs]; i++) { 228247f7623dSRémi Lacroix for (jb = 0; jb < bs; jb++) { 228347f7623dSRémi Lacroix for (ib = 0; ib < bs; ib++) { 228447f7623dSRémi Lacroix work[garray[b_aij->j[i]] * bs + jb] += PetscAbsScalar(*b_val); 228547f7623dSRémi Lacroix b_val++; 228647f7623dSRémi Lacroix } 228747f7623dSRémi Lacroix } 228847f7623dSRémi Lacroix } 2289857cbf51SRichard Tran Mills } else if (type == NORM_INFINITY) { 229047f7623dSRémi Lacroix for (i = a_aij->i[0]; i < a_aij->i[aij->A->rmap->n / bs]; i++) { 229147f7623dSRémi Lacroix for (jb = 0; jb < bs; jb++) { 229247f7623dSRémi Lacroix for (ib = 0; ib < bs; ib++) { 22936497c311SBarry Smith PetscInt col = A->cmap->rstart + a_aij->j[i] * bs + jb; 229447f7623dSRémi Lacroix work[col] = PetscMax(PetscAbsScalar(*a_val), work[col]); 229547f7623dSRémi Lacroix a_val++; 229647f7623dSRémi Lacroix } 229747f7623dSRémi Lacroix } 229847f7623dSRémi Lacroix } 229947f7623dSRémi Lacroix for (i = b_aij->i[0]; i < b_aij->i[aij->B->rmap->n / bs]; i++) { 230047f7623dSRémi Lacroix for (jb = 0; jb < bs; jb++) { 230147f7623dSRémi Lacroix for (ib = 0; ib < bs; ib++) { 23026497c311SBarry Smith PetscInt col = garray[b_aij->j[i]] * bs + jb; 230347f7623dSRémi Lacroix work[col] = PetscMax(PetscAbsScalar(*b_val), work[col]); 230447f7623dSRémi Lacroix b_val++; 230547f7623dSRémi Lacroix } 230647f7623dSRémi Lacroix } 230747f7623dSRémi Lacroix } 2308857cbf51SRichard Tran Mills } else if (type == REDUCTION_SUM_REALPART || type == REDUCTION_MEAN_REALPART) { 2309a873a8cdSSam Reynolds for (i = a_aij->i[0]; i < a_aij->i[aij->A->rmap->n / bs]; i++) { 2310a873a8cdSSam Reynolds for (jb = 0; jb < bs; jb++) { 2311a873a8cdSSam Reynolds for (ib = 0; ib < bs; ib++) { 2312857cbf51SRichard Tran Mills work[A->cmap->rstart + a_aij->j[i] * bs + jb] += PetscRealPart(*a_val); 2313a873a8cdSSam Reynolds a_val++; 2314a873a8cdSSam Reynolds } 2315a873a8cdSSam Reynolds } 2316a873a8cdSSam Reynolds } 2317a873a8cdSSam Reynolds for (i = b_aij->i[0]; i < b_aij->i[aij->B->rmap->n / bs]; i++) { 2318a873a8cdSSam Reynolds for (jb = 0; jb < bs; jb++) { 2319a873a8cdSSam Reynolds for (ib = 0; ib < bs; ib++) { 2320857cbf51SRichard Tran Mills work[garray[b_aij->j[i]] * bs + jb] += PetscRealPart(*b_val); 2321a873a8cdSSam Reynolds b_val++; 2322a873a8cdSSam Reynolds } 2323a873a8cdSSam Reynolds } 2324a873a8cdSSam Reynolds } 2325857cbf51SRichard Tran Mills } else if (type == REDUCTION_SUM_IMAGINARYPART || type == REDUCTION_MEAN_IMAGINARYPART) { 2326857cbf51SRichard Tran Mills for (i = a_aij->i[0]; i < a_aij->i[aij->A->rmap->n / bs]; i++) { 2327857cbf51SRichard Tran Mills for (jb = 0; jb < bs; jb++) { 2328857cbf51SRichard Tran Mills for (ib = 0; ib < bs; ib++) { 2329857cbf51SRichard Tran Mills work[A->cmap->rstart + a_aij->j[i] * bs + jb] += PetscImaginaryPart(*a_val); 2330857cbf51SRichard Tran Mills a_val++; 2331857cbf51SRichard Tran Mills } 2332857cbf51SRichard Tran Mills } 2333857cbf51SRichard Tran Mills } 2334857cbf51SRichard Tran Mills for (i = b_aij->i[0]; i < b_aij->i[aij->B->rmap->n / bs]; i++) { 2335857cbf51SRichard Tran Mills for (jb = 0; jb < bs; jb++) { 2336857cbf51SRichard Tran Mills for (ib = 0; ib < bs; ib++) { 2337857cbf51SRichard Tran Mills work[garray[b_aij->j[i]] * bs + jb] += PetscImaginaryPart(*b_val); 2338857cbf51SRichard Tran Mills b_val++; 2339857cbf51SRichard Tran Mills } 2340857cbf51SRichard Tran Mills } 2341857cbf51SRichard Tran Mills } 2342857cbf51SRichard Tran Mills } else SETERRQ(PetscObjectComm((PetscObject)A), PETSC_ERR_ARG_WRONG, "Unknown reduction type"); 2343857cbf51SRichard Tran Mills if (type == NORM_INFINITY) { 2344e91c04dfSPierre Jolivet PetscCallMPI(MPIU_Allreduce(work, reductions, N, MPIU_REAL, MPIU_MAX, PetscObjectComm((PetscObject)A))); 234547f7623dSRémi Lacroix } else { 2346e91c04dfSPierre Jolivet PetscCallMPI(MPIU_Allreduce(work, reductions, N, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)A))); 234747f7623dSRémi Lacroix } 23489566063dSJacob Faibussowitsch PetscCall(PetscFree(work)); 2349857cbf51SRichard Tran Mills if (type == NORM_2) { 2350a873a8cdSSam Reynolds for (i = 0; i < N; i++) reductions[i] = PetscSqrtReal(reductions[i]); 2351857cbf51SRichard Tran Mills } else if (type == REDUCTION_MEAN_REALPART || type == REDUCTION_MEAN_IMAGINARYPART) { 2352a873a8cdSSam Reynolds for (i = 0; i < N; i++) reductions[i] /= m; 235347f7623dSRémi Lacroix } 23543ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 235547f7623dSRémi Lacroix } 235647f7623dSRémi Lacroix 235766976f2fSJacob Faibussowitsch static PetscErrorCode MatInvertBlockDiagonal_MPIBAIJ(Mat A, const PetscScalar **values) 2358d71ae5a4SJacob Faibussowitsch { 2359bbead8a2SBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 2360bbead8a2SBarry Smith 2361bbead8a2SBarry Smith PetscFunctionBegin; 23629566063dSJacob Faibussowitsch PetscCall(MatInvertBlockDiagonal(a->A, values)); 23637b6c816cSBarry Smith A->factorerrortype = a->A->factorerrortype; 23647b6c816cSBarry Smith A->factorerror_zeropivot_value = a->A->factorerror_zeropivot_value; 23657b6c816cSBarry Smith A->factorerror_zeropivot_row = a->A->factorerror_zeropivot_row; 23663ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2367bbead8a2SBarry Smith } 2368bbead8a2SBarry Smith 236966976f2fSJacob Faibussowitsch static PetscErrorCode MatShift_MPIBAIJ(Mat Y, PetscScalar a) 2370d71ae5a4SJacob Faibussowitsch { 23717d68702bSBarry Smith Mat_MPIBAIJ *maij = (Mat_MPIBAIJ *)Y->data; 23726f33a894SBarry Smith Mat_SeqBAIJ *aij = (Mat_SeqBAIJ *)maij->A->data; 23737d68702bSBarry Smith 23747d68702bSBarry Smith PetscFunctionBegin; 23756f33a894SBarry Smith if (!Y->preallocated) { 23769566063dSJacob Faibussowitsch PetscCall(MatMPIBAIJSetPreallocation(Y, Y->rmap->bs, 1, NULL, 0, NULL)); 23776f33a894SBarry Smith } else if (!aij->nz) { 2378b83222d8SBarry Smith PetscInt nonew = aij->nonew; 23799566063dSJacob Faibussowitsch PetscCall(MatSeqBAIJSetPreallocation(maij->A, Y->rmap->bs, 1, NULL)); 2380b83222d8SBarry Smith aij->nonew = nonew; 23817d68702bSBarry Smith } 23829566063dSJacob Faibussowitsch PetscCall(MatShift_Basic(Y, a)); 23833ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 23847d68702bSBarry Smith } 23858c7482ecSBarry Smith 238666976f2fSJacob Faibussowitsch static PetscErrorCode MatMissingDiagonal_MPIBAIJ(Mat A, PetscBool *missing, PetscInt *d) 2387d71ae5a4SJacob Faibussowitsch { 23883b49f96aSBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 23893b49f96aSBarry Smith 23903b49f96aSBarry Smith PetscFunctionBegin; 23915f80ce2aSJacob Faibussowitsch PetscCheck(A->rmap->n == A->cmap->n, PETSC_COMM_SELF, PETSC_ERR_SUP, "Only works for square matrices"); 23929566063dSJacob Faibussowitsch PetscCall(MatMissingDiagonal(a->A, missing, d)); 23933b49f96aSBarry Smith if (d) { 23943b49f96aSBarry Smith PetscInt rstart; 23959566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(A, &rstart, NULL)); 23963b49f96aSBarry Smith *d += rstart / A->rmap->bs; 23973b49f96aSBarry Smith } 23983ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 23993b49f96aSBarry Smith } 24003b49f96aSBarry Smith 240166976f2fSJacob Faibussowitsch static PetscErrorCode MatGetDiagonalBlock_MPIBAIJ(Mat A, Mat *a) 2402d71ae5a4SJacob Faibussowitsch { 2403a5b7ff6bSBarry Smith PetscFunctionBegin; 2404a5b7ff6bSBarry Smith *a = ((Mat_MPIBAIJ *)A->data)->A; 24053ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2406a5b7ff6bSBarry Smith } 2407a5b7ff6bSBarry Smith 240817ea310bSPierre Jolivet static PetscErrorCode MatEliminateZeros_MPIBAIJ(Mat A, PetscBool keep) 240917ea310bSPierre Jolivet { 241017ea310bSPierre Jolivet Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 241117ea310bSPierre Jolivet 241217ea310bSPierre Jolivet PetscFunctionBegin; 241317ea310bSPierre Jolivet PetscCall(MatEliminateZeros_SeqBAIJ(a->A, keep)); // possibly keep zero diagonal coefficients 241417ea310bSPierre Jolivet PetscCall(MatEliminateZeros_SeqBAIJ(a->B, PETSC_FALSE)); // never keep zero diagonal coefficients 241517ea310bSPierre Jolivet PetscFunctionReturn(PETSC_SUCCESS); 241617ea310bSPierre Jolivet } 241717ea310bSPierre Jolivet 24183964eb88SJed Brown static struct _MatOps MatOps_Values = {MatSetValues_MPIBAIJ, 2419cc2dc46cSBarry Smith MatGetRow_MPIBAIJ, 2420cc2dc46cSBarry Smith MatRestoreRow_MPIBAIJ, 2421cc2dc46cSBarry Smith MatMult_MPIBAIJ, 242297304618SKris Buschelman /* 4*/ MatMultAdd_MPIBAIJ, 24237c922b88SBarry Smith MatMultTranspose_MPIBAIJ, 24247c922b88SBarry Smith MatMultTransposeAdd_MPIBAIJ, 2425f4259b30SLisandro Dalcin NULL, 2426f4259b30SLisandro Dalcin NULL, 2427f4259b30SLisandro Dalcin NULL, 2428f4259b30SLisandro Dalcin /*10*/ NULL, 2429f4259b30SLisandro Dalcin NULL, 2430f4259b30SLisandro Dalcin NULL, 2431b1a666ecSBarry Smith MatSOR_MPIBAIJ, 2432cc2dc46cSBarry Smith MatTranspose_MPIBAIJ, 243397304618SKris Buschelman /*15*/ MatGetInfo_MPIBAIJ, 24347fc3c18eSBarry Smith MatEqual_MPIBAIJ, 2435cc2dc46cSBarry Smith MatGetDiagonal_MPIBAIJ, 2436cc2dc46cSBarry Smith MatDiagonalScale_MPIBAIJ, 2437cc2dc46cSBarry Smith MatNorm_MPIBAIJ, 243897304618SKris Buschelman /*20*/ MatAssemblyBegin_MPIBAIJ, 2439cc2dc46cSBarry Smith MatAssemblyEnd_MPIBAIJ, 2440cc2dc46cSBarry Smith MatSetOption_MPIBAIJ, 2441cc2dc46cSBarry Smith MatZeroEntries_MPIBAIJ, 2442d519adbfSMatthew Knepley /*24*/ MatZeroRows_MPIBAIJ, 2443f4259b30SLisandro Dalcin NULL, 2444f4259b30SLisandro Dalcin NULL, 2445f4259b30SLisandro Dalcin NULL, 2446f4259b30SLisandro Dalcin NULL, 244726cec326SBarry Smith /*29*/ MatSetUp_MPI_Hash, 2448f4259b30SLisandro Dalcin NULL, 2449f4259b30SLisandro Dalcin NULL, 2450a5b7ff6bSBarry Smith MatGetDiagonalBlock_MPIBAIJ, 2451f4259b30SLisandro Dalcin NULL, 2452d519adbfSMatthew Knepley /*34*/ MatDuplicate_MPIBAIJ, 2453f4259b30SLisandro Dalcin NULL, 2454f4259b30SLisandro Dalcin NULL, 2455f4259b30SLisandro Dalcin NULL, 2456f4259b30SLisandro Dalcin NULL, 2457d519adbfSMatthew Knepley /*39*/ MatAXPY_MPIBAIJ, 24587dae84e0SHong Zhang MatCreateSubMatrices_MPIBAIJ, 2459cc2dc46cSBarry Smith MatIncreaseOverlap_MPIBAIJ, 2460cc2dc46cSBarry Smith MatGetValues_MPIBAIJ, 24613c896bc6SHong Zhang MatCopy_MPIBAIJ, 2462f4259b30SLisandro Dalcin /*44*/ NULL, 2463cc2dc46cSBarry Smith MatScale_MPIBAIJ, 24647d68702bSBarry Smith MatShift_MPIBAIJ, 2465f4259b30SLisandro Dalcin NULL, 24666f0a72daSMatthew G. Knepley MatZeroRowsColumns_MPIBAIJ, 2467f4259b30SLisandro Dalcin /*49*/ NULL, 2468f4259b30SLisandro Dalcin NULL, 2469f4259b30SLisandro Dalcin NULL, 2470f4259b30SLisandro Dalcin NULL, 2471f4259b30SLisandro Dalcin NULL, 247293dfae19SHong Zhang /*54*/ MatFDColoringCreate_MPIXAIJ, 2473f4259b30SLisandro Dalcin NULL, 2474cc2dc46cSBarry Smith MatSetUnfactored_MPIBAIJ, 247582094794SBarry Smith MatPermute_MPIBAIJ, 2476cc2dc46cSBarry Smith MatSetValuesBlocked_MPIBAIJ, 24777dae84e0SHong Zhang /*59*/ MatCreateSubMatrix_MPIBAIJ, 2478f14a1c24SBarry Smith MatDestroy_MPIBAIJ, 2479f14a1c24SBarry Smith MatView_MPIBAIJ, 2480f4259b30SLisandro Dalcin NULL, 2481f4259b30SLisandro Dalcin NULL, 2482f4259b30SLisandro Dalcin /*64*/ NULL, 2483f4259b30SLisandro Dalcin NULL, 2484f4259b30SLisandro Dalcin NULL, 2485f4259b30SLisandro Dalcin NULL, 2486f4259b30SLisandro Dalcin NULL, 2487d519adbfSMatthew Knepley /*69*/ MatGetRowMaxAbs_MPIBAIJ, 2488f4259b30SLisandro Dalcin NULL, 2489f4259b30SLisandro Dalcin NULL, 2490f4259b30SLisandro Dalcin NULL, 2491f4259b30SLisandro Dalcin NULL, 2492f4259b30SLisandro Dalcin /*74*/ NULL, 2493f6d58c54SBarry Smith MatFDColoringApply_BAIJ, 2494f4259b30SLisandro Dalcin NULL, 2495f4259b30SLisandro Dalcin NULL, 2496f4259b30SLisandro Dalcin NULL, 2497f4259b30SLisandro Dalcin /*79*/ NULL, 2498f4259b30SLisandro Dalcin NULL, 2499f4259b30SLisandro Dalcin NULL, 2500f4259b30SLisandro Dalcin NULL, 25015bba2384SShri Abhyankar MatLoad_MPIBAIJ, 2502f4259b30SLisandro Dalcin /*84*/ NULL, 2503f4259b30SLisandro Dalcin NULL, 2504f4259b30SLisandro Dalcin NULL, 2505f4259b30SLisandro Dalcin NULL, 2506f4259b30SLisandro Dalcin NULL, 2507f4259b30SLisandro Dalcin /*89*/ NULL, 2508f4259b30SLisandro Dalcin NULL, 2509f4259b30SLisandro Dalcin NULL, 2510f4259b30SLisandro Dalcin NULL, 2511f4259b30SLisandro Dalcin NULL, 2512f4259b30SLisandro Dalcin /*94*/ NULL, 2513f4259b30SLisandro Dalcin NULL, 2514f4259b30SLisandro Dalcin NULL, 2515f4259b30SLisandro Dalcin NULL, 2516f4259b30SLisandro Dalcin NULL, 2517f4259b30SLisandro Dalcin /*99*/ NULL, 2518f4259b30SLisandro Dalcin NULL, 2519f4259b30SLisandro Dalcin NULL, 25202726fb6dSPierre Jolivet MatConjugate_MPIBAIJ, 2521f4259b30SLisandro Dalcin NULL, 2522f4259b30SLisandro Dalcin /*104*/ NULL, 252399cafbc1SBarry Smith MatRealPart_MPIBAIJ, 25248c7482ecSBarry Smith MatImaginaryPart_MPIBAIJ, 2525f4259b30SLisandro Dalcin NULL, 2526f4259b30SLisandro Dalcin NULL, 2527f4259b30SLisandro Dalcin /*109*/ NULL, 2528f4259b30SLisandro Dalcin NULL, 2529f4259b30SLisandro Dalcin NULL, 2530f4259b30SLisandro Dalcin NULL, 25313b49f96aSBarry Smith MatMissingDiagonal_MPIBAIJ, 2532d1adec66SJed Brown /*114*/ MatGetSeqNonzeroStructure_MPIBAIJ, 2533f4259b30SLisandro Dalcin NULL, 25344683f7a4SShri Abhyankar MatGetGhosts_MPIBAIJ, 2535f4259b30SLisandro Dalcin NULL, 2536f4259b30SLisandro Dalcin NULL, 2537f4259b30SLisandro Dalcin /*119*/ NULL, 2538f4259b30SLisandro Dalcin NULL, 2539f4259b30SLisandro Dalcin NULL, 2540f4259b30SLisandro Dalcin NULL, 2541e8271787SHong Zhang MatGetMultiProcBlock_MPIBAIJ, 2542f4259b30SLisandro Dalcin /*124*/ NULL, 2543a873a8cdSSam Reynolds MatGetColumnReductions_MPIBAIJ, 25443964eb88SJed Brown MatInvertBlockDiagonal_MPIBAIJ, 2545f4259b30SLisandro Dalcin NULL, 2546f4259b30SLisandro Dalcin NULL, 2547f4259b30SLisandro Dalcin /*129*/ NULL, 2548f4259b30SLisandro Dalcin NULL, 2549f4259b30SLisandro Dalcin NULL, 2550f4259b30SLisandro Dalcin NULL, 2551f4259b30SLisandro Dalcin NULL, 2552f4259b30SLisandro Dalcin /*134*/ NULL, 2553f4259b30SLisandro Dalcin NULL, 2554f4259b30SLisandro Dalcin NULL, 2555f4259b30SLisandro Dalcin NULL, 2556f4259b30SLisandro Dalcin NULL, 255746533700Sstefano_zampini /*139*/ MatSetBlockSizes_Default, 2558f4259b30SLisandro Dalcin NULL, 2559f4259b30SLisandro Dalcin NULL, 2560bdf6f3fcSHong Zhang MatFDColoringSetUp_MPIXAIJ, 2561f4259b30SLisandro Dalcin NULL, 2562d70f29a3SPierre Jolivet /*144*/ MatCreateMPIMatConcatenateSeqMat_MPIBAIJ, 2563d70f29a3SPierre Jolivet NULL, 2564d70f29a3SPierre Jolivet NULL, 256599a7f59eSMark Adams NULL, 256699a7f59eSMark Adams NULL, 25677fb60732SBarry Smith NULL, 2568dec0b466SHong Zhang /*150*/ NULL, 2569eede4a3fSMark Adams MatEliminateZeros_MPIBAIJ, 25704cc2b5b5SPierre Jolivet MatGetRowSumAbs_MPIBAIJ, 257142ce410bSJunchao Zhang NULL, 257242ce410bSJunchao Zhang NULL, 2573fe1fc275SAlexander /*155*/ NULL, 2574fe1fc275SAlexander MatCopyHashToXAIJ_MPI_Hash}; 257579bdfe76SSatish Balay 2576cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIBAIJ_MPISBAIJ(Mat, MatType, MatReuse, Mat *); 2577c9225affSStefano Zampini PETSC_INTERN PetscErrorCode MatConvert_XAIJ_IS(Mat, MatType, MatReuse, Mat *); 2578d94109b8SHong Zhang 257966976f2fSJacob Faibussowitsch static PetscErrorCode MatMPIBAIJSetPreallocationCSR_MPIBAIJ(Mat B, PetscInt bs, const PetscInt ii[], const PetscInt jj[], const PetscScalar V[]) 2580d71ae5a4SJacob Faibussowitsch { 2581b8d659d7SLisandro Dalcin PetscInt m, rstart, cstart, cend; 2582f4259b30SLisandro Dalcin PetscInt i, j, dlen, olen, nz, nz_max = 0, *d_nnz = NULL, *o_nnz = NULL; 2583f4259b30SLisandro Dalcin const PetscInt *JJ = NULL; 2584f4259b30SLisandro Dalcin PetscScalar *values = NULL; 2585d47bf9aaSJed Brown PetscBool roworiented = ((Mat_MPIBAIJ *)B->data)->roworiented; 25863bd0feecSPierre Jolivet PetscBool nooffprocentries; 2587aac34f13SBarry Smith 2588aac34f13SBarry Smith PetscFunctionBegin; 25899566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetBlockSize(B->rmap, bs)); 25909566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetBlockSize(B->cmap, bs)); 25919566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->rmap)); 25929566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->cmap)); 25939566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetBlockSize(B->rmap, &bs)); 2594d0f46423SBarry Smith m = B->rmap->n / bs; 2595d0f46423SBarry Smith rstart = B->rmap->rstart / bs; 2596d0f46423SBarry Smith cstart = B->cmap->rstart / bs; 2597d0f46423SBarry Smith cend = B->cmap->rend / bs; 2598b8d659d7SLisandro Dalcin 25995f80ce2aSJacob Faibussowitsch PetscCheck(!ii[0], PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "ii[0] must be 0 but it is %" PetscInt_FMT, ii[0]); 26009566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(m, &d_nnz, m, &o_nnz)); 2601aac34f13SBarry Smith for (i = 0; i < m; i++) { 2602cf12db73SBarry Smith nz = ii[i + 1] - ii[i]; 26035f80ce2aSJacob Faibussowitsch PetscCheck(nz >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Local row %" PetscInt_FMT " has a negative number of columns %" PetscInt_FMT, i, nz); 2604b8d659d7SLisandro Dalcin nz_max = PetscMax(nz_max, nz); 260537cd3c0dSBarry Smith dlen = 0; 260637cd3c0dSBarry Smith olen = 0; 2607cf12db73SBarry Smith JJ = jj + ii[i]; 2608b8d659d7SLisandro Dalcin for (j = 0; j < nz; j++) { 260937cd3c0dSBarry Smith if (*JJ < cstart || *JJ >= cend) olen++; 261037cd3c0dSBarry Smith else dlen++; 2611aac34f13SBarry Smith JJ++; 2612aac34f13SBarry Smith } 261337cd3c0dSBarry Smith d_nnz[i] = dlen; 261437cd3c0dSBarry Smith o_nnz[i] = olen; 2615aac34f13SBarry Smith } 26169566063dSJacob Faibussowitsch PetscCall(MatMPIBAIJSetPreallocation(B, bs, 0, d_nnz, 0, o_nnz)); 26179566063dSJacob Faibussowitsch PetscCall(PetscFree2(d_nnz, o_nnz)); 2618aac34f13SBarry Smith 2619b8d659d7SLisandro Dalcin values = (PetscScalar *)V; 262048a46eb9SPierre Jolivet if (!values) PetscCall(PetscCalloc1(bs * bs * nz_max, &values)); 2621b8d659d7SLisandro Dalcin for (i = 0; i < m; i++) { 2622b8d659d7SLisandro Dalcin PetscInt row = i + rstart; 2623cf12db73SBarry Smith PetscInt ncols = ii[i + 1] - ii[i]; 2624cf12db73SBarry Smith const PetscInt *icols = jj + ii[i]; 2625bb80cfbbSStefano Zampini if (bs == 1 || !roworiented) { /* block ordering matches the non-nested layout of MatSetValues so we can insert entire rows */ 2626cf12db73SBarry Smith const PetscScalar *svals = values + (V ? (bs * bs * ii[i]) : 0); 26279566063dSJacob Faibussowitsch PetscCall(MatSetValuesBlocked_MPIBAIJ(B, 1, &row, ncols, icols, svals, INSERT_VALUES)); 26283adadaf3SJed Brown } else { /* block ordering does not match so we can only insert one block at a time. */ 26293adadaf3SJed Brown PetscInt j; 26303adadaf3SJed Brown for (j = 0; j < ncols; j++) { 26313adadaf3SJed Brown const PetscScalar *svals = values + (V ? (bs * bs * (ii[i] + j)) : 0); 26329566063dSJacob Faibussowitsch PetscCall(MatSetValuesBlocked_MPIBAIJ(B, 1, &row, 1, &icols[j], svals, INSERT_VALUES)); 26333adadaf3SJed Brown } 26343adadaf3SJed Brown } 2635aac34f13SBarry Smith } 2636aac34f13SBarry Smith 26379566063dSJacob Faibussowitsch if (!V) PetscCall(PetscFree(values)); 26383bd0feecSPierre Jolivet nooffprocentries = B->nooffprocentries; 26393bd0feecSPierre Jolivet B->nooffprocentries = PETSC_TRUE; 26409566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY)); 26419566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY)); 26423bd0feecSPierre Jolivet B->nooffprocentries = nooffprocentries; 26433bd0feecSPierre Jolivet 26449566063dSJacob Faibussowitsch PetscCall(MatSetOption(B, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE)); 26453ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2646aac34f13SBarry Smith } 2647aac34f13SBarry Smith 2648aac34f13SBarry Smith /*@C 264911a5261eSBarry Smith MatMPIBAIJSetPreallocationCSR - Creates a sparse parallel matrix in `MATBAIJ` format using the given nonzero structure and (optional) numerical values 2650aac34f13SBarry Smith 2651d083f849SBarry Smith Collective 2652aac34f13SBarry Smith 2653aac34f13SBarry Smith Input Parameters: 26541c4f3114SJed Brown + B - the matrix 2655dfb205c3SBarry Smith . bs - the block size 265620f4b53cSBarry Smith . i - the indices into `j` for the start of each local row (starts with zero) 2657aac34f13SBarry Smith . j - the column indices for each local row (starts with zero) these must be sorted for each row 2658d8a51d2aSBarry Smith - v - optional values in the matrix, use `NULL` if not provided 2659aac34f13SBarry Smith 2660664954b6SBarry Smith Level: advanced 2661aac34f13SBarry Smith 266295452b02SPatrick Sanan Notes: 2663d8a51d2aSBarry Smith The `i`, `j`, and `v` arrays ARE copied by this routine into the internal format used by PETSc; 2664d8a51d2aSBarry Smith thus you CANNOT change the matrix entries by changing the values of `v` after you have 2665d8a51d2aSBarry Smith called this routine. 2666d8a51d2aSBarry Smith 266711a5261eSBarry Smith The order of the entries in values is specified by the `MatOption` `MAT_ROW_ORIENTED`. For example, C programs 266811a5261eSBarry Smith may want to use the default `MAT_ROW_ORIENTED` with value `PETSC_TRUE` and use an array v[nnz][bs][bs] where the second index is 26693adadaf3SJed Brown over rows within a block and the last index is over columns within a block row. Fortran programs will likely set 267011a5261eSBarry Smith `MAT_ROW_ORIENTED` with value `PETSC_FALSE` and use a Fortran array v(bs,bs,nnz) in which the first index is over rows within a 26713adadaf3SJed Brown block column and the second index is over columns within a block. 26723adadaf3SJed Brown 2673664954b6SBarry Smith Though this routine has Preallocation() in the name it also sets the exact nonzero locations of the matrix entries and usually the numerical values as well 2674664954b6SBarry Smith 26757d2c085eSPierre Jolivet .seealso: `Mat`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIBAIJSetPreallocation()`, `MatCreateAIJ()`, `MATMPIAIJ`, `MatCreateMPIBAIJWithArrays()`, `MATMPIBAIJ` 2676aac34f13SBarry Smith @*/ 2677d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIBAIJSetPreallocationCSR(Mat B, PetscInt bs, const PetscInt i[], const PetscInt j[], const PetscScalar v[]) 2678d71ae5a4SJacob Faibussowitsch { 2679aac34f13SBarry Smith PetscFunctionBegin; 26806ba663aaSJed Brown PetscValidHeaderSpecific(B, MAT_CLASSID, 1); 26816ba663aaSJed Brown PetscValidType(B, 1); 26826ba663aaSJed Brown PetscValidLogicalCollectiveInt(B, bs, 2); 2683cac4c232SBarry Smith PetscTryMethod(B, "MatMPIBAIJSetPreallocationCSR_C", (Mat, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[]), (B, bs, i, j, v)); 26843ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2685aac34f13SBarry Smith } 2686aac34f13SBarry Smith 2687d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIBAIJSetPreallocation_MPIBAIJ(Mat B, PetscInt bs, PetscInt d_nz, const PetscInt *d_nnz, PetscInt o_nz, const PetscInt *o_nnz) 2688d71ae5a4SJacob Faibussowitsch { 2689ad79cf63SBarry Smith Mat_MPIBAIJ *b = (Mat_MPIBAIJ *)B->data; 2690535b19f3SBarry Smith PetscInt i; 26915d2a9ed1SStefano Zampini PetscMPIInt size; 2692a23d5eceSKris Buschelman 2693a23d5eceSKris Buschelman PetscFunctionBegin; 2694ad79cf63SBarry Smith if (B->hash_active) { 2695aea10558SJacob Faibussowitsch B->ops[0] = b->cops; 2696ad79cf63SBarry Smith B->hash_active = PETSC_FALSE; 2697ad79cf63SBarry Smith } 2698ad79cf63SBarry Smith if (!B->preallocated) PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)B), bs, &B->bstash)); 26999566063dSJacob Faibussowitsch PetscCall(MatSetBlockSize(B, PetscAbs(bs))); 27009566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->rmap)); 27019566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->cmap)); 27029566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetBlockSize(B->rmap, &bs)); 2703899cda47SBarry Smith 2704a23d5eceSKris Buschelman if (d_nnz) { 2705ad540459SPierre Jolivet for (i = 0; i < B->rmap->n / bs; i++) PetscCheck(d_nnz[i] >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "d_nnz cannot be less than -1: local row %" PetscInt_FMT " value %" PetscInt_FMT, i, d_nnz[i]); 2706a23d5eceSKris Buschelman } 2707a23d5eceSKris Buschelman if (o_nnz) { 2708ad540459SPierre Jolivet for (i = 0; i < B->rmap->n / bs; i++) PetscCheck(o_nnz[i] >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "o_nnz cannot be less than -1: local row %" PetscInt_FMT " value %" PetscInt_FMT, i, o_nnz[i]); 2709a23d5eceSKris Buschelman } 2710a23d5eceSKris Buschelman 2711a23d5eceSKris Buschelman b->bs2 = bs * bs; 2712d0f46423SBarry Smith b->mbs = B->rmap->n / bs; 2713d0f46423SBarry Smith b->nbs = B->cmap->n / bs; 2714d0f46423SBarry Smith b->Mbs = B->rmap->N / bs; 2715d0f46423SBarry Smith b->Nbs = B->cmap->N / bs; 2716a23d5eceSKris Buschelman 2717ad540459SPierre Jolivet for (i = 0; i <= b->size; i++) b->rangebs[i] = B->rmap->range[i] / bs; 2718d0f46423SBarry Smith b->rstartbs = B->rmap->rstart / bs; 2719d0f46423SBarry Smith b->rendbs = B->rmap->rend / bs; 2720d0f46423SBarry Smith b->cstartbs = B->cmap->rstart / bs; 2721d0f46423SBarry Smith b->cendbs = B->cmap->rend / bs; 2722a23d5eceSKris Buschelman 2723cb7b82ddSBarry Smith #if defined(PETSC_USE_CTABLE) 2724eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIDestroy(&b->colmap)); 2725cb7b82ddSBarry Smith #else 27269566063dSJacob Faibussowitsch PetscCall(PetscFree(b->colmap)); 2727cb7b82ddSBarry Smith #endif 27289566063dSJacob Faibussowitsch PetscCall(PetscFree(b->garray)); 27299566063dSJacob Faibussowitsch PetscCall(VecDestroy(&b->lvec)); 27309566063dSJacob Faibussowitsch PetscCall(VecScatterDestroy(&b->Mvctx)); 2731cb7b82ddSBarry Smith 27329566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)B), &size)); 2733c508b908SBarry Smith 2734c508b908SBarry Smith MatSeqXAIJGetOptions_Private(b->B); 27359566063dSJacob Faibussowitsch PetscCall(MatDestroy(&b->B)); 27369566063dSJacob Faibussowitsch PetscCall(MatCreate(PETSC_COMM_SELF, &b->B)); 27379566063dSJacob Faibussowitsch PetscCall(MatSetSizes(b->B, B->rmap->n, size > 1 ? B->cmap->N : 0, B->rmap->n, size > 1 ? B->cmap->N : 0)); 27389566063dSJacob Faibussowitsch PetscCall(MatSetType(b->B, MATSEQBAIJ)); 2739c508b908SBarry Smith MatSeqXAIJRestoreOptions_Private(b->B); 2740cb7b82ddSBarry Smith 2741c508b908SBarry Smith MatSeqXAIJGetOptions_Private(b->A); 2742ad79cf63SBarry Smith PetscCall(MatDestroy(&b->A)); 27439566063dSJacob Faibussowitsch PetscCall(MatCreate(PETSC_COMM_SELF, &b->A)); 27449566063dSJacob Faibussowitsch PetscCall(MatSetSizes(b->A, B->rmap->n, B->cmap->n, B->rmap->n, B->cmap->n)); 27459566063dSJacob Faibussowitsch PetscCall(MatSetType(b->A, MATSEQBAIJ)); 2746c508b908SBarry Smith MatSeqXAIJRestoreOptions_Private(b->A); 2747a23d5eceSKris Buschelman 27489566063dSJacob Faibussowitsch PetscCall(MatSeqBAIJSetPreallocation(b->A, bs, d_nz, d_nnz)); 27499566063dSJacob Faibussowitsch PetscCall(MatSeqBAIJSetPreallocation(b->B, bs, o_nz, o_nnz)); 2750526dfc15SBarry Smith B->preallocated = PETSC_TRUE; 2751cb7b82ddSBarry Smith B->was_assembled = PETSC_FALSE; 2752cb7b82ddSBarry Smith B->assembled = PETSC_FALSE; 27533ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2754a23d5eceSKris Buschelman } 2755a23d5eceSKris Buschelman 27567087cfbeSBarry Smith extern PetscErrorCode MatDiagonalScaleLocal_MPIBAIJ(Mat, Vec); 27577087cfbeSBarry Smith extern PetscErrorCode MatSetHashTableFactor_MPIBAIJ(Mat, PetscReal); 27585bf65638SKris Buschelman 2759d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode MatConvert_MPIBAIJ_MPIAdj(Mat B, MatType newtype, MatReuse reuse, Mat *adj) 2760d71ae5a4SJacob Faibussowitsch { 276182094794SBarry Smith Mat_MPIBAIJ *b = (Mat_MPIBAIJ *)B->data; 276282094794SBarry Smith Mat_SeqBAIJ *d = (Mat_SeqBAIJ *)b->A->data, *o = (Mat_SeqBAIJ *)b->B->data; 276382094794SBarry Smith PetscInt M = B->rmap->n / B->rmap->bs, i, *ii, *jj, cnt, j, k, rstart = B->rmap->rstart / B->rmap->bs; 276482094794SBarry Smith const PetscInt *id = d->i, *jd = d->j, *io = o->i, *jo = o->j, *garray = b->garray; 276582094794SBarry Smith 276682094794SBarry Smith PetscFunctionBegin; 27679566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(M + 1, &ii)); 276882094794SBarry Smith ii[0] = 0; 276982094794SBarry Smith for (i = 0; i < M; i++) { 277008401ef6SPierre Jolivet PetscCheck((id[i + 1] - id[i]) >= 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Indices wrong %" PetscInt_FMT " %" PetscInt_FMT " %" PetscInt_FMT, i, id[i], id[i + 1]); 277108401ef6SPierre Jolivet PetscCheck((io[i + 1] - io[i]) >= 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Indices wrong %" PetscInt_FMT " %" PetscInt_FMT " %" PetscInt_FMT, i, io[i], io[i + 1]); 277282094794SBarry Smith ii[i + 1] = ii[i] + id[i + 1] - id[i] + io[i + 1] - io[i]; 27735ee9ba1cSJed Brown /* remove one from count of matrix has diagonal */ 27745ee9ba1cSJed Brown for (j = id[i]; j < id[i + 1]; j++) { 27759371c9d4SSatish Balay if (jd[j] == i) { 27769371c9d4SSatish Balay ii[i + 1]--; 27779371c9d4SSatish Balay break; 27789371c9d4SSatish Balay } 27795ee9ba1cSJed Brown } 278082094794SBarry Smith } 27819566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(ii[M], &jj)); 278282094794SBarry Smith cnt = 0; 278382094794SBarry Smith for (i = 0; i < M; i++) { 278482094794SBarry Smith for (j = io[i]; j < io[i + 1]; j++) { 278582094794SBarry Smith if (garray[jo[j]] > rstart) break; 278682094794SBarry Smith jj[cnt++] = garray[jo[j]]; 278782094794SBarry Smith } 278882094794SBarry Smith for (k = id[i]; k < id[i + 1]; k++) { 2789ad540459SPierre Jolivet if (jd[k] != i) jj[cnt++] = rstart + jd[k]; 279082094794SBarry Smith } 2791ad540459SPierre Jolivet for (; j < io[i + 1]; j++) jj[cnt++] = garray[jo[j]]; 279282094794SBarry Smith } 27939566063dSJacob Faibussowitsch PetscCall(MatCreateMPIAdj(PetscObjectComm((PetscObject)B), M, B->cmap->N / B->rmap->bs, ii, jj, NULL, adj)); 27943ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 279582094794SBarry Smith } 279682094794SBarry Smith 2797c6db04a5SJed Brown #include <../src/mat/impls/aij/mpi/mpiaij.h> 279862471d69SBarry Smith 2799cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_SeqBAIJ_SeqAIJ(Mat, MatType, MatReuse, Mat *); 2800b2573a8aSBarry Smith 2801d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode MatConvert_MPIBAIJ_MPIAIJ(Mat A, MatType newtype, MatReuse reuse, Mat *newmat) 2802d71ae5a4SJacob Faibussowitsch { 280362471d69SBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 280485a69837SSatish Balay Mat_MPIAIJ *b; 28055f80ce2aSJacob Faibussowitsch Mat B; 280662471d69SBarry Smith 280762471d69SBarry Smith PetscFunctionBegin; 28085f80ce2aSJacob Faibussowitsch PetscCheck(A->assembled, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Matrix must be assembled"); 280962471d69SBarry Smith 28100f6d62edSLisandro Dalcin if (reuse == MAT_REUSE_MATRIX) { 28110f6d62edSLisandro Dalcin B = *newmat; 28120f6d62edSLisandro Dalcin } else { 28139566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)A), &B)); 28149566063dSJacob Faibussowitsch PetscCall(MatSetType(B, MATMPIAIJ)); 28159566063dSJacob Faibussowitsch PetscCall(MatSetSizes(B, A->rmap->n, A->cmap->n, A->rmap->N, A->cmap->N)); 28169566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizes(B, A->rmap->bs, A->cmap->bs)); 28179566063dSJacob Faibussowitsch PetscCall(MatSeqAIJSetPreallocation(B, 0, NULL)); 28189566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(B, 0, NULL, 0, NULL)); 28190f6d62edSLisandro Dalcin } 282062471d69SBarry Smith b = (Mat_MPIAIJ *)B->data; 282162471d69SBarry Smith 28220f6d62edSLisandro Dalcin if (reuse == MAT_REUSE_MATRIX) { 28239566063dSJacob Faibussowitsch PetscCall(MatConvert_SeqBAIJ_SeqAIJ(a->A, MATSEQAIJ, MAT_REUSE_MATRIX, &b->A)); 28249566063dSJacob Faibussowitsch PetscCall(MatConvert_SeqBAIJ_SeqAIJ(a->B, MATSEQAIJ, MAT_REUSE_MATRIX, &b->B)); 28250f6d62edSLisandro Dalcin } else { 28267c612885SStefano Zampini PetscInt *garray = a->garray; 28277c612885SStefano Zampini Mat_SeqAIJ *bB; 28287c612885SStefano Zampini PetscInt bs, nnz; 28299566063dSJacob Faibussowitsch PetscCall(MatDestroy(&b->A)); 28309566063dSJacob Faibussowitsch PetscCall(MatDestroy(&b->B)); 28317c612885SStefano Zampini /* just clear out the data structure */ 2832eb14dd14SAlex Lindsay PetscCall(MatDisAssemble_MPIAIJ(B, PETSC_FALSE)); 28339566063dSJacob Faibussowitsch PetscCall(MatConvert_SeqBAIJ_SeqAIJ(a->A, MATSEQAIJ, MAT_INITIAL_MATRIX, &b->A)); 28349566063dSJacob Faibussowitsch PetscCall(MatConvert_SeqBAIJ_SeqAIJ(a->B, MATSEQAIJ, MAT_INITIAL_MATRIX, &b->B)); 28357c612885SStefano Zampini 28367c612885SStefano Zampini /* Global numbering for b->B columns */ 28377c612885SStefano Zampini bB = (Mat_SeqAIJ *)b->B->data; 28387c612885SStefano Zampini bs = A->rmap->bs; 28397c612885SStefano Zampini nnz = bB->i[A->rmap->n]; 28407c612885SStefano Zampini for (PetscInt k = 0; k < nnz; k++) { 28417c612885SStefano Zampini PetscInt bj = bB->j[k] / bs; 28427c612885SStefano Zampini PetscInt br = bB->j[k] % bs; 28437c612885SStefano Zampini bB->j[k] = garray[bj] * bs + br; 28447c612885SStefano Zampini } 28450f6d62edSLisandro Dalcin } 28469566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY)); 28479566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY)); 28480f6d62edSLisandro Dalcin 2849511c6705SHong Zhang if (reuse == MAT_INPLACE_MATRIX) { 28509566063dSJacob Faibussowitsch PetscCall(MatHeaderReplace(A, &B)); 285162471d69SBarry Smith } else { 285262471d69SBarry Smith *newmat = B; 285362471d69SBarry Smith } 28543ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 285562471d69SBarry Smith } 285662471d69SBarry Smith 28570bad9183SKris Buschelman /*MC 2858fafad747SKris Buschelman MATMPIBAIJ - MATMPIBAIJ = "mpibaij" - A matrix type to be used for distributed block sparse matrices. 28590bad9183SKris Buschelman 28600bad9183SKris Buschelman Options Database Keys: 286111a5261eSBarry Smith + -mat_type mpibaij - sets the matrix type to `MATMPIBAIJ` during a call to `MatSetFromOptions()` 28628c07d4e3SBarry Smith . -mat_block_size <bs> - set the blocksize used to store the matrix 28636679dcc1SBarry Smith . -mat_baij_mult_version version - indicate the version of the matrix-vector product to use (0 often indicates using BLAS) 286467b8a455SSatish Balay - -mat_use_hash_table <fact> - set hash table factor 28650bad9183SKris Buschelman 28660bad9183SKris Buschelman Level: beginner 28670cd7f59aSBarry Smith 286811a5261eSBarry Smith Note: 28695e0ad47dSPierre Jolivet `MatSetOption(A, MAT_STRUCTURE_ONLY, PETSC_TRUE)` may be called for this matrix type. In this no 287011a5261eSBarry Smith space is allocated for the nonzero entries and any entries passed with `MatSetValues()` are ignored 28710bad9183SKris Buschelman 28725e0ad47dSPierre Jolivet .seealso: `Mat`, `MATBAIJ`, `MATSEQBAIJ`, `MatCreateBAIJ` 28730bad9183SKris Buschelman M*/ 28740bad9183SKris Buschelman 2875cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIBAIJ_MPIBSTRM(Mat, MatType, MatReuse, Mat *); 2876c0cdd4a1SDahai Guo 2877d71ae5a4SJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatCreate_MPIBAIJ(Mat B) 2878d71ae5a4SJacob Faibussowitsch { 2879273d9f13SBarry Smith Mat_MPIBAIJ *b; 288094ae4db5SBarry Smith PetscBool flg = PETSC_FALSE; 2881273d9f13SBarry Smith 2882273d9f13SBarry Smith PetscFunctionBegin; 28834dfa11a4SJacob Faibussowitsch PetscCall(PetscNew(&b)); 288482502324SSatish Balay B->data = (void *)b; 2885aea10558SJacob Faibussowitsch B->ops[0] = MatOps_Values; 2886273d9f13SBarry Smith B->assembled = PETSC_FALSE; 2887273d9f13SBarry Smith 2888273d9f13SBarry Smith B->insertmode = NOT_SET_VALUES; 28899566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)B), &b->rank)); 28909566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)B), &b->size)); 2891273d9f13SBarry Smith 2892273d9f13SBarry Smith /* build local table of row and column ownerships */ 28939566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(b->size + 1, &b->rangebs)); 2894273d9f13SBarry Smith 2895273d9f13SBarry Smith /* build cache for off array entries formed */ 28969566063dSJacob Faibussowitsch PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)B), 1, &B->stash)); 289726fbe8dcSKarl Rupp 2898273d9f13SBarry Smith b->donotstash = PETSC_FALSE; 28990298fd71SBarry Smith b->colmap = NULL; 29000298fd71SBarry Smith b->garray = NULL; 2901273d9f13SBarry Smith b->roworiented = PETSC_TRUE; 2902273d9f13SBarry Smith 2903273d9f13SBarry Smith /* stuff used in block assembly */ 2904f4259b30SLisandro Dalcin b->barray = NULL; 2905273d9f13SBarry Smith 2906273d9f13SBarry Smith /* stuff used for matrix vector multiply */ 2907f4259b30SLisandro Dalcin b->lvec = NULL; 2908f4259b30SLisandro Dalcin b->Mvctx = NULL; 2909273d9f13SBarry Smith 2910273d9f13SBarry Smith /* stuff for MatGetRow() */ 2911f4259b30SLisandro Dalcin b->rowindices = NULL; 2912f4259b30SLisandro Dalcin b->rowvalues = NULL; 2913273d9f13SBarry Smith b->getrowactive = PETSC_FALSE; 2914273d9f13SBarry Smith 2915273d9f13SBarry Smith /* hash table stuff */ 2916f4259b30SLisandro Dalcin b->ht = NULL; 2917f4259b30SLisandro Dalcin b->hd = NULL; 2918273d9f13SBarry Smith b->ht_size = 0; 2919273d9f13SBarry Smith b->ht_flag = PETSC_FALSE; 2920273d9f13SBarry Smith b->ht_fact = 0; 2921273d9f13SBarry Smith b->ht_total_ct = 0; 2922273d9f13SBarry Smith b->ht_insert_ct = 0; 2923273d9f13SBarry Smith 29247dae84e0SHong Zhang /* stuff for MatCreateSubMatrices_MPIBAIJ_local() */ 29257a868f3eSHong Zhang b->ijonly = PETSC_FALSE; 29267a868f3eSHong Zhang 29279566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpibaij_mpiadj_C", MatConvert_MPIBAIJ_MPIAdj)); 29289566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpibaij_mpiaij_C", MatConvert_MPIBAIJ_MPIAIJ)); 29299566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpibaij_mpisbaij_C", MatConvert_MPIBAIJ_MPISBAIJ)); 29307ea3e4caSstefano_zampini #if defined(PETSC_HAVE_HYPRE) 29319566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpibaij_hypre_C", MatConvert_AIJ_HYPRE)); 29327ea3e4caSstefano_zampini #endif 29339566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatStoreValues_C", MatStoreValues_MPIBAIJ)); 29349566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatRetrieveValues_C", MatRetrieveValues_MPIBAIJ)); 29359566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMPIBAIJSetPreallocation_C", MatMPIBAIJSetPreallocation_MPIBAIJ)); 29369566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMPIBAIJSetPreallocationCSR_C", MatMPIBAIJSetPreallocationCSR_MPIBAIJ)); 29379566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatDiagonalScaleLocal_C", MatDiagonalScaleLocal_MPIBAIJ)); 29389566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatSetHashTableFactor_C", MatSetHashTableFactor_MPIBAIJ)); 29399566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpibaij_is_C", MatConvert_XAIJ_IS)); 29409566063dSJacob Faibussowitsch PetscCall(PetscObjectChangeTypeName((PetscObject)B, MATMPIBAIJ)); 294194ae4db5SBarry Smith 2942d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)B), NULL, "Options for loading MPIBAIJ matrix 1", "Mat"); 29439566063dSJacob Faibussowitsch PetscCall(PetscOptionsName("-mat_use_hash_table", "Use hash table to save time in constructing matrix", "MatSetOption", &flg)); 294494ae4db5SBarry Smith if (flg) { 294594ae4db5SBarry Smith PetscReal fact = 1.39; 29469566063dSJacob Faibussowitsch PetscCall(MatSetOption(B, MAT_USE_HASH_TABLE, PETSC_TRUE)); 29479566063dSJacob Faibussowitsch PetscCall(PetscOptionsReal("-mat_use_hash_table", "Use hash table factor", "MatMPIBAIJSetHashTableFactor", fact, &fact, NULL)); 294894ae4db5SBarry Smith if (fact <= 1.0) fact = 1.39; 29499566063dSJacob Faibussowitsch PetscCall(MatMPIBAIJSetHashTableFactor(B, fact)); 29509566063dSJacob Faibussowitsch PetscCall(PetscInfo(B, "Hash table Factor used %5.2g\n", (double)fact)); 295194ae4db5SBarry Smith } 2952d0609cedSBarry Smith PetscOptionsEnd(); 29533ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2954273d9f13SBarry Smith } 2955273d9f13SBarry Smith 29562920cce0SJacob Faibussowitsch // PetscClangLinter pragma disable: -fdoc-section-header-unknown 2957209238afSKris Buschelman /*MC 2958002d173eSKris Buschelman MATBAIJ - MATBAIJ = "baij" - A matrix type to be used for block sparse matrices. 2959209238afSKris Buschelman 296011a5261eSBarry Smith This matrix type is identical to `MATSEQBAIJ` when constructed with a single process communicator, 296111a5261eSBarry Smith and `MATMPIBAIJ` otherwise. 2962209238afSKris Buschelman 2963209238afSKris Buschelman Options Database Keys: 296411a5261eSBarry Smith . -mat_type baij - sets the matrix type to `MATBAIJ` during a call to `MatSetFromOptions()` 2965209238afSKris Buschelman 2966209238afSKris Buschelman Level: beginner 2967209238afSKris Buschelman 296867be906fSBarry Smith .seealso: `Mat`, `MatCreateBAIJ()`, `MATSEQBAIJ`, `MATMPIBAIJ`, `MatMPIBAIJSetPreallocation()`, `MatMPIBAIJSetPreallocationCSR()` 2969209238afSKris Buschelman M*/ 2970209238afSKris Buschelman 29715d83a8b1SBarry Smith /*@ 297211a5261eSBarry Smith MatMPIBAIJSetPreallocation - Allocates memory for a sparse parallel matrix in `MATMPIBAIJ` format 297367be906fSBarry Smith (block compressed row). 2974273d9f13SBarry Smith 2975c3339decSBarry Smith Collective 2976273d9f13SBarry Smith 2977273d9f13SBarry Smith Input Parameters: 29781c4f3114SJed Brown + B - the matrix 297911a5261eSBarry Smith . bs - size of block, the blocks are ALWAYS square. One can use `MatSetBlockSizes()` to set a different row and column blocksize but the row 298067be906fSBarry Smith blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with `MatCreateVecs()` 2981273d9f13SBarry Smith . d_nz - number of block nonzeros per block row in diagonal portion of local 2982273d9f13SBarry Smith submatrix (same for all local rows) 2983273d9f13SBarry Smith . d_nnz - array containing the number of block nonzeros in the various block rows 2984273d9f13SBarry Smith of the in diagonal portion of the local (possibly different for each block 298567be906fSBarry Smith row) or `NULL`. If you plan to factor the matrix you must leave room for the diagonal entry and 298695742e49SBarry Smith set it even if it is zero. 2987273d9f13SBarry Smith . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 2988273d9f13SBarry Smith submatrix (same for all local rows). 2989273d9f13SBarry Smith - o_nnz - array containing the number of nonzeros in the various block rows of the 2990273d9f13SBarry Smith off-diagonal portion of the local submatrix (possibly different for 299167be906fSBarry Smith each block row) or `NULL`. 2992273d9f13SBarry Smith 299349a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 2994273d9f13SBarry Smith 2995273d9f13SBarry Smith Options Database Keys: 29968c07d4e3SBarry Smith + -mat_block_size - size of the blocks to use 299767b8a455SSatish Balay - -mat_use_hash_table <fact> - set hash table factor 2998273d9f13SBarry Smith 299967be906fSBarry Smith Level: intermediate 300067be906fSBarry Smith 3001273d9f13SBarry Smith Notes: 300267be906fSBarry Smith For good matrix assembly performance 300367be906fSBarry Smith the user should preallocate the matrix storage by setting the parameters 300467be906fSBarry Smith `d_nz` (or `d_nnz`) and `o_nz` (or `o_nnz`). By setting these parameters accurately, 300567be906fSBarry Smith performance can be increased by more than a factor of 50. 300667be906fSBarry Smith 300711a5261eSBarry Smith If `PETSC_DECIDE` or `PETSC_DETERMINE` is used for a particular argument on one processor 3008273d9f13SBarry Smith than it must be used on all processors that share the object for that argument. 3009273d9f13SBarry Smith 3010273d9f13SBarry Smith Storage Information: 3011273d9f13SBarry Smith For a square global matrix we define each processor's diagonal portion 3012273d9f13SBarry Smith to be its local rows and the corresponding columns (a square submatrix); 3013273d9f13SBarry Smith each processor's off-diagonal portion encompasses the remainder of the 3014273d9f13SBarry Smith local matrix (a rectangular submatrix). 3015273d9f13SBarry Smith 3016273d9f13SBarry Smith The user can specify preallocated storage for the diagonal part of 301767be906fSBarry Smith the local submatrix with either `d_nz` or `d_nnz` (not both). Set 301867be906fSBarry Smith `d_nz` = `PETSC_DEFAULT` and `d_nnz` = `NULL` for PETSc to control dynamic 3019273d9f13SBarry Smith memory allocation. Likewise, specify preallocated storage for the 302067be906fSBarry Smith off-diagonal part of the local submatrix with `o_nz` or `o_nnz` (not both). 3021273d9f13SBarry Smith 3022273d9f13SBarry Smith Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 3023273d9f13SBarry Smith the figure below we depict these three local rows and all columns (0-11). 3024273d9f13SBarry Smith 3025273d9f13SBarry Smith .vb 3026273d9f13SBarry Smith 0 1 2 3 4 5 6 7 8 9 10 11 3027a4b1a0f6SJed Brown -------------------------- 3028273d9f13SBarry Smith row 3 |o o o d d d o o o o o o 3029273d9f13SBarry Smith row 4 |o o o d d d o o o o o o 3030273d9f13SBarry Smith row 5 |o o o d d d o o o o o o 3031a4b1a0f6SJed Brown -------------------------- 3032273d9f13SBarry Smith .ve 3033273d9f13SBarry Smith 3034273d9f13SBarry Smith Thus, any entries in the d locations are stored in the d (diagonal) 3035273d9f13SBarry Smith submatrix, and any entries in the o locations are stored in the 3036273d9f13SBarry Smith o (off-diagonal) submatrix. Note that the d and the o submatrices are 303711a5261eSBarry Smith stored simply in the `MATSEQBAIJ` format for compressed row storage. 3038273d9f13SBarry Smith 303967be906fSBarry Smith Now `d_nz` should indicate the number of block nonzeros per row in the d matrix, 304067be906fSBarry Smith and `o_nz` should indicate the number of block nonzeros per row in the o matrix. 3041273d9f13SBarry Smith In general, for PDE problems in which most nonzeros are near the diagonal, 304220f4b53cSBarry Smith one expects `d_nz` >> `o_nz`. 3043273d9f13SBarry Smith 304411a5261eSBarry Smith You can call `MatGetInfo()` to get information on how effective the preallocation was; 3045aa95bbe8SBarry Smith for example the fields mallocs,nz_allocated,nz_used,nz_unneeded; 304667be906fSBarry Smith You can also run with the option `-info` and look for messages with the string 3047aa95bbe8SBarry Smith malloc in them to see if additional memory allocation was needed. 3048aa95bbe8SBarry Smith 304967be906fSBarry Smith .seealso: `Mat`, `MATMPIBAIJ`, `MatCreate()`, `MatCreateSeqBAIJ()`, `MatSetValues()`, `MatCreateBAIJ()`, `MatMPIBAIJSetPreallocationCSR()`, `PetscSplitOwnership()` 3050273d9f13SBarry Smith @*/ 3051d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIBAIJSetPreallocation(Mat B, PetscInt bs, PetscInt d_nz, const PetscInt d_nnz[], PetscInt o_nz, const PetscInt o_nnz[]) 3052d71ae5a4SJacob Faibussowitsch { 3053273d9f13SBarry Smith PetscFunctionBegin; 30546ba663aaSJed Brown PetscValidHeaderSpecific(B, MAT_CLASSID, 1); 30556ba663aaSJed Brown PetscValidType(B, 1); 30566ba663aaSJed Brown PetscValidLogicalCollectiveInt(B, bs, 2); 3057cac4c232SBarry Smith PetscTryMethod(B, "MatMPIBAIJSetPreallocation_C", (Mat, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[]), (B, bs, d_nz, d_nnz, o_nz, o_nnz)); 30583ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3059273d9f13SBarry Smith } 3060273d9f13SBarry Smith 30612920cce0SJacob Faibussowitsch // PetscClangLinter pragma disable: -fdoc-section-header-unknown 30625d83a8b1SBarry Smith /*@ 306311a5261eSBarry Smith MatCreateBAIJ - Creates a sparse parallel matrix in `MATBAIJ` format 306467be906fSBarry Smith (block compressed row). 306579bdfe76SSatish Balay 3066d083f849SBarry Smith Collective 3067db81eaa0SLois Curfman McInnes 306879bdfe76SSatish Balay Input Parameters: 3069db81eaa0SLois Curfman McInnes + comm - MPI communicator 307011a5261eSBarry Smith . bs - size of block, the blocks are ALWAYS square. One can use `MatSetBlockSizes()` to set a different row and column blocksize but the row 307111a5261eSBarry Smith blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with `MatCreateVecs()` 307211a5261eSBarry Smith . m - number of local rows (or `PETSC_DECIDE` to have calculated if M is given) 307392e8d321SLois Curfman McInnes This value should be the same as the local size used in creating the 307492e8d321SLois Curfman McInnes y vector for the matrix-vector product y = Ax. 307511a5261eSBarry Smith . n - number of local columns (or `PETSC_DECIDE` to have calculated if N is given) 307692e8d321SLois Curfman McInnes This value should be the same as the local size used in creating the 307792e8d321SLois Curfman McInnes x vector for the matrix-vector product y = Ax. 307811a5261eSBarry Smith . M - number of global rows (or `PETSC_DETERMINE` to have calculated if m is given) 307911a5261eSBarry Smith . N - number of global columns (or `PETSC_DETERMINE` to have calculated if n is given) 308047a75d0bSBarry Smith . d_nz - number of nonzero blocks per block row in diagonal portion of local 308179bdfe76SSatish Balay submatrix (same for all local rows) 308247a75d0bSBarry Smith . d_nnz - array containing the number of nonzero blocks in the various block rows 308392e8d321SLois Curfman McInnes of the in diagonal portion of the local (possibly different for each block 30840298fd71SBarry Smith row) or NULL. If you plan to factor the matrix you must leave room for the diagonal entry 308595742e49SBarry Smith and set it even if it is zero. 308647a75d0bSBarry Smith . o_nz - number of nonzero blocks per block row in the off-diagonal portion of local 308779bdfe76SSatish Balay submatrix (same for all local rows). 308847a75d0bSBarry Smith - o_nnz - array containing the number of nonzero blocks in the various block rows of the 308992e8d321SLois Curfman McInnes off-diagonal portion of the local submatrix (possibly different for 30900298fd71SBarry Smith each block row) or NULL. 309179bdfe76SSatish Balay 309279bdfe76SSatish Balay Output Parameter: 309379bdfe76SSatish Balay . A - the matrix 309479bdfe76SSatish Balay 3095db81eaa0SLois Curfman McInnes Options Database Keys: 30968c07d4e3SBarry Smith + -mat_block_size - size of the blocks to use 309767b8a455SSatish Balay - -mat_use_hash_table <fact> - set hash table factor 30983ffaccefSLois Curfman McInnes 309967be906fSBarry Smith Level: intermediate 310067be906fSBarry Smith 310167be906fSBarry Smith Notes: 310277433607SBarry Smith It is recommended that one use `MatCreateFromOptions()` or the `MatCreate()`, `MatSetType()` and/or `MatSetFromOptions()`, 310377433607SBarry Smith MatXXXXSetPreallocation() paradigm instead of this routine directly. 310477433607SBarry Smith [MatXXXXSetPreallocation() is, for example, `MatSeqBAIJSetPreallocation()`] 310577433607SBarry Smith 310667be906fSBarry Smith For good matrix assembly performance 310767be906fSBarry Smith the user should preallocate the matrix storage by setting the parameters 310867be906fSBarry Smith `d_nz` (or `d_nnz`) and `o_nz` (or `o_nnz`). By setting these parameters accurately, 310967be906fSBarry Smith performance can be increased by more than a factor of 50. 311067be906fSBarry Smith 311149a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 311249a6f317SBarry Smith 311347a75d0bSBarry Smith A nonzero block is any block that as 1 or more nonzeros in it 311447a75d0bSBarry Smith 311579bdfe76SSatish Balay The user MUST specify either the local or global matrix dimensions 311679bdfe76SSatish Balay (possibly both). 311779bdfe76SSatish Balay 311811a5261eSBarry Smith If `PETSC_DECIDE` or `PETSC_DETERMINE` is used for a particular argument on one processor 3119be79a94dSBarry Smith than it must be used on all processors that share the object for that argument. 3120be79a94dSBarry Smith 3121727bdf9bSBarry Smith If `m` and `n` are not `PETSC_DECIDE`, then the values determine the `PetscLayout` of the matrix and the ranges returned by 3122727bdf9bSBarry Smith `MatGetOwnershipRange()`, `MatGetOwnershipRanges()`, `MatGetOwnershipRangeColumn()`, and `MatGetOwnershipRangesColumn()`. 3123727bdf9bSBarry Smith 312479bdfe76SSatish Balay Storage Information: 312579bdfe76SSatish Balay For a square global matrix we define each processor's diagonal portion 312679bdfe76SSatish Balay to be its local rows and the corresponding columns (a square submatrix); 312779bdfe76SSatish Balay each processor's off-diagonal portion encompasses the remainder of the 312879bdfe76SSatish Balay local matrix (a rectangular submatrix). 312979bdfe76SSatish Balay 313079bdfe76SSatish Balay The user can specify preallocated storage for the diagonal part of 313179bdfe76SSatish Balay the local submatrix with either d_nz or d_nnz (not both). Set 313267be906fSBarry Smith `d_nz` = `PETSC_DEFAULT` and `d_nnz` = `NULL` for PETSc to control dynamic 313379bdfe76SSatish Balay memory allocation. Likewise, specify preallocated storage for the 313467be906fSBarry Smith off-diagonal part of the local submatrix with `o_nz` or `o_nnz` (not both). 313579bdfe76SSatish Balay 313679bdfe76SSatish Balay Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 313779bdfe76SSatish Balay the figure below we depict these three local rows and all columns (0-11). 313879bdfe76SSatish Balay 3139db81eaa0SLois Curfman McInnes .vb 3140db81eaa0SLois Curfman McInnes 0 1 2 3 4 5 6 7 8 9 10 11 3141a4b1a0f6SJed Brown -------------------------- 3142db81eaa0SLois Curfman McInnes row 3 |o o o d d d o o o o o o 3143db81eaa0SLois Curfman McInnes row 4 |o o o d d d o o o o o o 3144db81eaa0SLois Curfman McInnes row 5 |o o o d d d o o o o o o 3145a4b1a0f6SJed Brown -------------------------- 3146db81eaa0SLois Curfman McInnes .ve 314779bdfe76SSatish Balay 314879bdfe76SSatish Balay Thus, any entries in the d locations are stored in the d (diagonal) 314979bdfe76SSatish Balay submatrix, and any entries in the o locations are stored in the 315079bdfe76SSatish Balay o (off-diagonal) submatrix. Note that the d and the o submatrices are 315111a5261eSBarry Smith stored simply in the `MATSEQBAIJ` format for compressed row storage. 315279bdfe76SSatish Balay 315367be906fSBarry Smith Now `d_nz` should indicate the number of block nonzeros per row in the d matrix, 315467be906fSBarry Smith and `o_nz` should indicate the number of block nonzeros per row in the o matrix. 315579bdfe76SSatish Balay In general, for PDE problems in which most nonzeros are near the diagonal, 315620f4b53cSBarry Smith one expects `d_nz` >> `o_nz`. 315779bdfe76SSatish Balay 3158727bdf9bSBarry Smith .seealso: `Mat`, `MatCreate()`, `MatCreateSeqBAIJ()`, `MatSetValues()`, `MatMPIBAIJSetPreallocation()`, `MatMPIBAIJSetPreallocationCSR()`, 3159727bdf9bSBarry Smith `MatGetOwnershipRange()`, `MatGetOwnershipRanges()`, `MatGetOwnershipRangeColumn()`, `MatGetOwnershipRangesColumn()`, `PetscLayout` 316079bdfe76SSatish Balay @*/ 3161d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateBAIJ(MPI_Comm comm, PetscInt bs, PetscInt m, PetscInt n, PetscInt M, PetscInt N, PetscInt d_nz, const PetscInt d_nnz[], PetscInt o_nz, const PetscInt o_nnz[], Mat *A) 3162d71ae5a4SJacob Faibussowitsch { 3163b24ad042SBarry Smith PetscMPIInt size; 316479bdfe76SSatish Balay 3165d64ed03dSBarry Smith PetscFunctionBegin; 31669566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, A)); 31679566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*A, m, n, M, N)); 31689566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 3169273d9f13SBarry Smith if (size > 1) { 31709566063dSJacob Faibussowitsch PetscCall(MatSetType(*A, MATMPIBAIJ)); 31719566063dSJacob Faibussowitsch PetscCall(MatMPIBAIJSetPreallocation(*A, bs, d_nz, d_nnz, o_nz, o_nnz)); 3172273d9f13SBarry Smith } else { 31739566063dSJacob Faibussowitsch PetscCall(MatSetType(*A, MATSEQBAIJ)); 31749566063dSJacob Faibussowitsch PetscCall(MatSeqBAIJSetPreallocation(*A, bs, d_nz, d_nnz)); 31753914022bSBarry Smith } 31763ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 317779bdfe76SSatish Balay } 3178026e39d0SSatish Balay 3179d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatDuplicate_MPIBAIJ(Mat matin, MatDuplicateOption cpvalues, Mat *newmat) 3180d71ae5a4SJacob Faibussowitsch { 31810ac07820SSatish Balay Mat mat; 31820ac07820SSatish Balay Mat_MPIBAIJ *a, *oldmat = (Mat_MPIBAIJ *)matin->data; 3183b24ad042SBarry Smith PetscInt len = 0; 31840ac07820SSatish Balay 3185d64ed03dSBarry Smith PetscFunctionBegin; 3186f4259b30SLisandro Dalcin *newmat = NULL; 31879566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)matin), &mat)); 31889566063dSJacob Faibussowitsch PetscCall(MatSetSizes(mat, matin->rmap->n, matin->cmap->n, matin->rmap->N, matin->cmap->N)); 31899566063dSJacob Faibussowitsch PetscCall(MatSetType(mat, ((PetscObject)matin)->type_name)); 31907fff6886SHong Zhang 3191420957c1SBarry Smith PetscCall(PetscLayoutReference(matin->rmap, &mat->rmap)); 3192420957c1SBarry Smith PetscCall(PetscLayoutReference(matin->cmap, &mat->cmap)); 3193420957c1SBarry Smith if (matin->hash_active) { 3194420957c1SBarry Smith PetscCall(MatSetUp(mat)); 3195420957c1SBarry Smith } else { 3196d5f3da31SBarry Smith mat->factortype = matin->factortype; 3197273d9f13SBarry Smith mat->preallocated = PETSC_TRUE; 31980ac07820SSatish Balay mat->assembled = PETSC_TRUE; 31997fff6886SHong Zhang mat->insertmode = NOT_SET_VALUES; 32007fff6886SHong Zhang 3201273d9f13SBarry Smith a = (Mat_MPIBAIJ *)mat->data; 3202d0f46423SBarry Smith mat->rmap->bs = matin->rmap->bs; 32030ac07820SSatish Balay a->bs2 = oldmat->bs2; 32040ac07820SSatish Balay a->mbs = oldmat->mbs; 32050ac07820SSatish Balay a->nbs = oldmat->nbs; 32060ac07820SSatish Balay a->Mbs = oldmat->Mbs; 32070ac07820SSatish Balay a->Nbs = oldmat->Nbs; 32080ac07820SSatish Balay 32090ac07820SSatish Balay a->size = oldmat->size; 32100ac07820SSatish Balay a->rank = oldmat->rank; 3211aef5e8e0SSatish Balay a->donotstash = oldmat->donotstash; 3212aef5e8e0SSatish Balay a->roworiented = oldmat->roworiented; 3213f4259b30SLisandro Dalcin a->rowindices = NULL; 3214f4259b30SLisandro Dalcin a->rowvalues = NULL; 32150ac07820SSatish Balay a->getrowactive = PETSC_FALSE; 3216f4259b30SLisandro Dalcin a->barray = NULL; 3217899cda47SBarry Smith a->rstartbs = oldmat->rstartbs; 3218899cda47SBarry Smith a->rendbs = oldmat->rendbs; 3219899cda47SBarry Smith a->cstartbs = oldmat->cstartbs; 3220899cda47SBarry Smith a->cendbs = oldmat->cendbs; 32210ac07820SSatish Balay 3222133cdb44SSatish Balay /* hash table stuff */ 3223f4259b30SLisandro Dalcin a->ht = NULL; 3224f4259b30SLisandro Dalcin a->hd = NULL; 3225133cdb44SSatish Balay a->ht_size = 0; 3226133cdb44SSatish Balay a->ht_flag = oldmat->ht_flag; 322725fdafccSSatish Balay a->ht_fact = oldmat->ht_fact; 3228133cdb44SSatish Balay a->ht_total_ct = 0; 3229133cdb44SSatish Balay a->ht_insert_ct = 0; 3230133cdb44SSatish Balay 32319566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(a->rangebs, oldmat->rangebs, a->size + 1)); 32320ac07820SSatish Balay if (oldmat->colmap) { 3233aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 3234eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIDuplicate(oldmat->colmap, &a->colmap)); 323548e59246SSatish Balay #else 32369566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(a->Nbs, &a->colmap)); 32379566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(a->colmap, oldmat->colmap, a->Nbs)); 323848e59246SSatish Balay #endif 3239f4259b30SLisandro Dalcin } else a->colmap = NULL; 32404beb1cfeSHong Zhang 3241f4f49eeaSPierre Jolivet if (oldmat->garray && (len = ((Mat_SeqBAIJ *)oldmat->B->data)->nbs)) { 32429566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(len, &a->garray)); 32439566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(a->garray, oldmat->garray, len)); 3244f4259b30SLisandro Dalcin } else a->garray = NULL; 32450ac07820SSatish Balay 32469566063dSJacob Faibussowitsch PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)matin), matin->rmap->bs, &mat->bstash)); 32479566063dSJacob Faibussowitsch PetscCall(VecDuplicate(oldmat->lvec, &a->lvec)); 32489566063dSJacob Faibussowitsch PetscCall(VecScatterCopy(oldmat->Mvctx, &a->Mvctx)); 32497fff6886SHong Zhang 32509566063dSJacob Faibussowitsch PetscCall(MatDuplicate(oldmat->A, cpvalues, &a->A)); 32519566063dSJacob Faibussowitsch PetscCall(MatDuplicate(oldmat->B, cpvalues, &a->B)); 3252420957c1SBarry Smith } 32539566063dSJacob Faibussowitsch PetscCall(PetscFunctionListDuplicate(((PetscObject)matin)->qlist, &((PetscObject)mat)->qlist)); 32540ac07820SSatish Balay *newmat = mat; 32553ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 32560ac07820SSatish Balay } 325757b952d6SSatish Balay 3258618cc2edSLisandro Dalcin /* Used for both MPIBAIJ and MPISBAIJ matrices */ 3259d71ae5a4SJacob Faibussowitsch PetscErrorCode MatLoad_MPIBAIJ_Binary(Mat mat, PetscViewer viewer) 3260d71ae5a4SJacob Faibussowitsch { 3261b51a4376SLisandro Dalcin PetscInt header[4], M, N, nz, bs, m, n, mbs, nbs, rows, cols, sum, i, j, k; 3262b51a4376SLisandro Dalcin PetscInt *rowidxs, *colidxs, rs, cs, ce; 3263b51a4376SLisandro Dalcin PetscScalar *matvals; 3264b51a4376SLisandro Dalcin 3265b51a4376SLisandro Dalcin PetscFunctionBegin; 32669566063dSJacob Faibussowitsch PetscCall(PetscViewerSetUp(viewer)); 3267b51a4376SLisandro Dalcin 3268b51a4376SLisandro Dalcin /* read in matrix header */ 32699566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryRead(viewer, header, 4, NULL, PETSC_INT)); 32705f80ce2aSJacob Faibussowitsch PetscCheck(header[0] == MAT_FILE_CLASSID, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Not a matrix object in file"); 32719371c9d4SSatish Balay M = header[1]; 32729371c9d4SSatish Balay N = header[2]; 32739371c9d4SSatish Balay nz = header[3]; 32745f80ce2aSJacob Faibussowitsch PetscCheck(M >= 0, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Matrix row size (%" PetscInt_FMT ") in file is negative", M); 32755f80ce2aSJacob Faibussowitsch PetscCheck(N >= 0, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Matrix column size (%" PetscInt_FMT ") in file is negative", N); 32765f80ce2aSJacob Faibussowitsch PetscCheck(nz >= 0, PETSC_COMM_SELF, PETSC_ERR_FILE_UNEXPECTED, "Matrix stored in special format on disk, cannot load as MPIBAIJ"); 3277b51a4376SLisandro Dalcin 3278b51a4376SLisandro Dalcin /* set block sizes from the viewer's .info file */ 32799566063dSJacob Faibussowitsch PetscCall(MatLoad_Binary_BlockSizes(mat, viewer)); 3280618cc2edSLisandro Dalcin /* set local sizes if not set already */ 3281618cc2edSLisandro Dalcin if (mat->rmap->n < 0 && M == N) mat->rmap->n = mat->cmap->n; 3282618cc2edSLisandro Dalcin if (mat->cmap->n < 0 && M == N) mat->cmap->n = mat->rmap->n; 3283b51a4376SLisandro Dalcin /* set global sizes if not set already */ 3284b51a4376SLisandro Dalcin if (mat->rmap->N < 0) mat->rmap->N = M; 3285b51a4376SLisandro Dalcin if (mat->cmap->N < 0) mat->cmap->N = N; 32869566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(mat->rmap)); 32879566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(mat->cmap)); 3288b51a4376SLisandro Dalcin 3289b51a4376SLisandro Dalcin /* check if the matrix sizes are correct */ 32909566063dSJacob Faibussowitsch PetscCall(MatGetSize(mat, &rows, &cols)); 32915f80ce2aSJacob Faibussowitsch PetscCheck(M == rows && N == cols, PETSC_COMM_SELF, PETSC_ERR_FILE_UNEXPECTED, "Matrix in file of different sizes (%" PetscInt_FMT ", %" PetscInt_FMT ") than the input matrix (%" PetscInt_FMT ", %" PetscInt_FMT ")", M, N, rows, cols); 32929566063dSJacob Faibussowitsch PetscCall(MatGetBlockSize(mat, &bs)); 32939566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(mat, &m, &n)); 32949566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetRange(mat->rmap, &rs, NULL)); 32959566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetRange(mat->cmap, &cs, &ce)); 32969371c9d4SSatish Balay mbs = m / bs; 32979371c9d4SSatish Balay nbs = n / bs; 3298b51a4376SLisandro Dalcin 3299b51a4376SLisandro Dalcin /* read in row lengths and build row indices */ 33009566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m + 1, &rowidxs)); 33019566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryReadAll(viewer, rowidxs + 1, m, PETSC_DECIDE, M, PETSC_INT)); 33029371c9d4SSatish Balay rowidxs[0] = 0; 33039371c9d4SSatish Balay for (i = 0; i < m; i++) rowidxs[i + 1] += rowidxs[i]; 3304462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&rowidxs[m], &sum, 1, MPIU_INT, MPI_SUM, PetscObjectComm((PetscObject)viewer))); 33055f80ce2aSJacob Faibussowitsch PetscCheck(sum == nz, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Inconsistent matrix data in file: nonzeros = %" PetscInt_FMT ", sum-row-lengths = %" PetscInt_FMT, nz, sum); 3306b51a4376SLisandro Dalcin 3307b51a4376SLisandro Dalcin /* read in column indices and matrix values */ 33089566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(rowidxs[m], &colidxs, rowidxs[m], &matvals)); 33099566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryReadAll(viewer, colidxs, rowidxs[m], PETSC_DETERMINE, PETSC_DETERMINE, PETSC_INT)); 33109566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryReadAll(viewer, matvals, rowidxs[m], PETSC_DETERMINE, PETSC_DETERMINE, PETSC_SCALAR)); 3311b51a4376SLisandro Dalcin 3312b51a4376SLisandro Dalcin { /* preallocate matrix storage */ 3313b51a4376SLisandro Dalcin PetscBT bt; /* helper bit set to count diagonal nonzeros */ 3314b51a4376SLisandro Dalcin PetscHSetI ht; /* helper hash set to count off-diagonal nonzeros */ 3315618cc2edSLisandro Dalcin PetscBool sbaij, done; 3316b51a4376SLisandro Dalcin PetscInt *d_nnz, *o_nnz; 3317b51a4376SLisandro Dalcin 33189566063dSJacob Faibussowitsch PetscCall(PetscBTCreate(nbs, &bt)); 33199566063dSJacob Faibussowitsch PetscCall(PetscHSetICreate(&ht)); 33209566063dSJacob Faibussowitsch PetscCall(PetscCalloc2(mbs, &d_nnz, mbs, &o_nnz)); 33219566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)mat, MATMPISBAIJ, &sbaij)); 3322b51a4376SLisandro Dalcin for (i = 0; i < mbs; i++) { 33239566063dSJacob Faibussowitsch PetscCall(PetscBTMemzero(nbs, bt)); 33249566063dSJacob Faibussowitsch PetscCall(PetscHSetIClear(ht)); 3325618cc2edSLisandro Dalcin for (k = 0; k < bs; k++) { 3326618cc2edSLisandro Dalcin PetscInt row = bs * i + k; 3327618cc2edSLisandro Dalcin for (j = rowidxs[row]; j < rowidxs[row + 1]; j++) { 3328618cc2edSLisandro Dalcin PetscInt col = colidxs[j]; 3329618cc2edSLisandro Dalcin if (!sbaij || col >= row) { 3330618cc2edSLisandro Dalcin if (col >= cs && col < ce) { 3331618cc2edSLisandro Dalcin if (!PetscBTLookupSet(bt, (col - cs) / bs)) d_nnz[i]++; 3332b51a4376SLisandro Dalcin } else { 33339566063dSJacob Faibussowitsch PetscCall(PetscHSetIQueryAdd(ht, col / bs, &done)); 3334b51a4376SLisandro Dalcin if (done) o_nnz[i]++; 3335b51a4376SLisandro Dalcin } 3336b51a4376SLisandro Dalcin } 3337618cc2edSLisandro Dalcin } 3338618cc2edSLisandro Dalcin } 3339618cc2edSLisandro Dalcin } 33409566063dSJacob Faibussowitsch PetscCall(PetscBTDestroy(&bt)); 33419566063dSJacob Faibussowitsch PetscCall(PetscHSetIDestroy(&ht)); 33429566063dSJacob Faibussowitsch PetscCall(MatMPIBAIJSetPreallocation(mat, bs, 0, d_nnz, 0, o_nnz)); 33439566063dSJacob Faibussowitsch PetscCall(MatMPISBAIJSetPreallocation(mat, bs, 0, d_nnz, 0, o_nnz)); 33449566063dSJacob Faibussowitsch PetscCall(PetscFree2(d_nnz, o_nnz)); 3345b51a4376SLisandro Dalcin } 3346b51a4376SLisandro Dalcin 3347b51a4376SLisandro Dalcin /* store matrix values */ 3348b51a4376SLisandro Dalcin for (i = 0; i < m; i++) { 3349b51a4376SLisandro Dalcin PetscInt row = rs + i, s = rowidxs[i], e = rowidxs[i + 1]; 33509927e4dfSBarry Smith PetscUseTypeMethod(mat, setvalues, 1, &row, e - s, colidxs + s, matvals + s, INSERT_VALUES); 3351b51a4376SLisandro Dalcin } 3352b51a4376SLisandro Dalcin 33539566063dSJacob Faibussowitsch PetscCall(PetscFree(rowidxs)); 33549566063dSJacob Faibussowitsch PetscCall(PetscFree2(colidxs, matvals)); 33559566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(mat, MAT_FINAL_ASSEMBLY)); 33569566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(mat, MAT_FINAL_ASSEMBLY)); 33573ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3358b51a4376SLisandro Dalcin } 3359b51a4376SLisandro Dalcin 3360d71ae5a4SJacob Faibussowitsch PetscErrorCode MatLoad_MPIBAIJ(Mat mat, PetscViewer viewer) 3361d71ae5a4SJacob Faibussowitsch { 33627f489da9SVaclav Hapla PetscBool isbinary; 33634683f7a4SShri Abhyankar 33644683f7a4SShri Abhyankar PetscFunctionBegin; 33659566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary)); 33665f80ce2aSJacob Faibussowitsch PetscCheck(isbinary, PetscObjectComm((PetscObject)viewer), PETSC_ERR_SUP, "Viewer type %s not yet supported for reading %s matrices", ((PetscObject)viewer)->type_name, ((PetscObject)mat)->type_name); 33679566063dSJacob Faibussowitsch PetscCall(MatLoad_MPIBAIJ_Binary(mat, viewer)); 33683ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 33694683f7a4SShri Abhyankar } 33704683f7a4SShri Abhyankar 3371133cdb44SSatish Balay /*@ 337211a5261eSBarry Smith MatMPIBAIJSetHashTableFactor - Sets the factor required to compute the size of the matrices hash table 3373133cdb44SSatish Balay 3374133cdb44SSatish Balay Input Parameters: 3375a2b725a8SWilliam Gropp + mat - the matrix 3376a2b725a8SWilliam Gropp - fact - factor 3377133cdb44SSatish Balay 337811a5261eSBarry Smith Options Database Key: 337911a5261eSBarry Smith . -mat_use_hash_table <fact> - provide the factor 3380fee21e36SBarry Smith 33818c890885SBarry Smith Level: advanced 33828c890885SBarry Smith 338367be906fSBarry Smith .seealso: `Mat`, `MATMPIBAIJ`, `MatSetOption()` 3384133cdb44SSatish Balay @*/ 3385d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIBAIJSetHashTableFactor(Mat mat, PetscReal fact) 3386d71ae5a4SJacob Faibussowitsch { 33875bf65638SKris Buschelman PetscFunctionBegin; 3388cac4c232SBarry Smith PetscTryMethod(mat, "MatSetHashTableFactor_C", (Mat, PetscReal), (mat, fact)); 33893ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 33905bf65638SKris Buschelman } 33915bf65638SKris Buschelman 3392d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetHashTableFactor_MPIBAIJ(Mat mat, PetscReal fact) 3393d71ae5a4SJacob Faibussowitsch { 339425fdafccSSatish Balay Mat_MPIBAIJ *baij; 3395133cdb44SSatish Balay 3396133cdb44SSatish Balay PetscFunctionBegin; 3397133cdb44SSatish Balay baij = (Mat_MPIBAIJ *)mat->data; 3398133cdb44SSatish Balay baij->ht_fact = fact; 33993ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3400133cdb44SSatish Balay } 3401f2a5309cSSatish Balay 3402d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIBAIJGetSeqBAIJ(Mat A, Mat *Ad, Mat *Ao, const PetscInt *colmap[]) 3403d71ae5a4SJacob Faibussowitsch { 3404f2a5309cSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 3405ab4d48faSStefano Zampini PetscBool flg; 34065fd66863SKarl Rupp 3407f2a5309cSSatish Balay PetscFunctionBegin; 34089566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)A, MATMPIBAIJ, &flg)); 34095f80ce2aSJacob Faibussowitsch PetscCheck(flg, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "This function requires a MATMPIBAIJ matrix as input"); 341021e72a00SBarry Smith if (Ad) *Ad = a->A; 341121e72a00SBarry Smith if (Ao) *Ao = a->B; 341221e72a00SBarry Smith if (colmap) *colmap = a->garray; 34133ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3414f2a5309cSSatish Balay } 341585535b8eSBarry Smith 341685535b8eSBarry Smith /* 341785535b8eSBarry Smith Special version for direct calls from Fortran (to eliminate two function call overheads 341885535b8eSBarry Smith */ 341985535b8eSBarry Smith #if defined(PETSC_HAVE_FORTRAN_CAPS) 342085535b8eSBarry Smith #define matmpibaijsetvaluesblocked_ MATMPIBAIJSETVALUESBLOCKED 342185535b8eSBarry Smith #elif !defined(PETSC_HAVE_FORTRAN_UNDERSCORE) 342285535b8eSBarry Smith #define matmpibaijsetvaluesblocked_ matmpibaijsetvaluesblocked 342385535b8eSBarry Smith #endif 342485535b8eSBarry Smith 34252920cce0SJacob Faibussowitsch // PetscClangLinter pragma disable: -fdoc-synopsis-matching-symbol-name 342685535b8eSBarry Smith /*@C 342711a5261eSBarry Smith MatMPIBAIJSetValuesBlocked - Direct Fortran call to replace call to `MatSetValuesBlocked()` 342885535b8eSBarry Smith 3429c3339decSBarry Smith Collective 343085535b8eSBarry Smith 343185535b8eSBarry Smith Input Parameters: 3432fe59aa6dSJacob Faibussowitsch + matin - the matrix 343385535b8eSBarry Smith . min - number of input rows 343485535b8eSBarry Smith . im - input rows 343585535b8eSBarry Smith . nin - number of input columns 343685535b8eSBarry Smith . in - input columns 343785535b8eSBarry Smith . v - numerical values input 343811a5261eSBarry Smith - addvin - `INSERT_VALUES` or `ADD_VALUES` 343985535b8eSBarry Smith 344020f4b53cSBarry Smith Level: advanced 344120f4b53cSBarry Smith 3442fe59aa6dSJacob Faibussowitsch Developer Notes: 344311a5261eSBarry Smith This has a complete copy of `MatSetValuesBlocked_MPIBAIJ()` which is terrible code un-reuse. 344485535b8eSBarry Smith 344567be906fSBarry Smith .seealso: `Mat`, `MatSetValuesBlocked()` 344685535b8eSBarry Smith @*/ 344766976f2fSJacob Faibussowitsch PETSC_EXTERN PetscErrorCode matmpibaijsetvaluesblocked_(Mat *matin, PetscInt *min, const PetscInt im[], PetscInt *nin, const PetscInt in[], const MatScalar v[], InsertMode *addvin) 3448d71ae5a4SJacob Faibussowitsch { 344985535b8eSBarry Smith /* convert input arguments to C version */ 345085535b8eSBarry Smith Mat mat = *matin; 345185535b8eSBarry Smith PetscInt m = *min, n = *nin; 345285535b8eSBarry Smith InsertMode addv = *addvin; 345385535b8eSBarry Smith 345485535b8eSBarry Smith Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 345585535b8eSBarry Smith const MatScalar *value; 345685535b8eSBarry Smith MatScalar *barray = baij->barray; 3457ace3abfcSBarry Smith PetscBool roworiented = baij->roworiented; 345885535b8eSBarry Smith PetscInt i, j, ii, jj, row, col, rstart = baij->rstartbs; 345985535b8eSBarry Smith PetscInt rend = baij->rendbs, cstart = baij->cstartbs, stepval; 3460d0f46423SBarry Smith PetscInt cend = baij->cendbs, bs = mat->rmap->bs, bs2 = baij->bs2; 346185535b8eSBarry Smith 346285535b8eSBarry Smith PetscFunctionBegin; 346385535b8eSBarry Smith /* tasks normally handled by MatSetValuesBlocked() */ 346426fbe8dcSKarl Rupp if (mat->insertmode == NOT_SET_VALUES) mat->insertmode = addv; 34655f80ce2aSJacob Faibussowitsch else PetscCheck(mat->insertmode == addv, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Cannot mix add values and insert values"); 34665f80ce2aSJacob Faibussowitsch PetscCheck(!mat->factortype, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Not for factored matrix"); 346785535b8eSBarry Smith if (mat->assembled) { 346885535b8eSBarry Smith mat->was_assembled = PETSC_TRUE; 346985535b8eSBarry Smith mat->assembled = PETSC_FALSE; 347085535b8eSBarry Smith } 34719566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(MAT_SetValues, mat, 0, 0, 0)); 347285535b8eSBarry Smith 347385535b8eSBarry Smith if (!barray) { 34749566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(bs2, &barray)); 347585535b8eSBarry Smith baij->barray = barray; 347685535b8eSBarry Smith } 347785535b8eSBarry Smith 347826fbe8dcSKarl Rupp if (roworiented) stepval = (n - 1) * bs; 347926fbe8dcSKarl Rupp else stepval = (m - 1) * bs; 348026fbe8dcSKarl Rupp 348185535b8eSBarry Smith for (i = 0; i < m; i++) { 348285535b8eSBarry Smith if (im[i] < 0) continue; 34836bdcaf15SBarry Smith PetscCheck(im[i] < baij->Mbs, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large, row %" PetscInt_FMT " max %" PetscInt_FMT, im[i], baij->Mbs - 1); 348485535b8eSBarry Smith if (im[i] >= rstart && im[i] < rend) { 348585535b8eSBarry Smith row = im[i] - rstart; 348685535b8eSBarry Smith for (j = 0; j < n; j++) { 348785535b8eSBarry Smith /* If NumCol = 1 then a copy is not required */ 348885535b8eSBarry Smith if ((roworiented) && (n == 1)) { 348985535b8eSBarry Smith barray = (MatScalar *)v + i * bs2; 349085535b8eSBarry Smith } else if ((!roworiented) && (m == 1)) { 349185535b8eSBarry Smith barray = (MatScalar *)v + j * bs2; 349285535b8eSBarry Smith } else { /* Here a copy is required */ 349385535b8eSBarry Smith if (roworiented) { 349485535b8eSBarry Smith value = v + i * (stepval + bs) * bs + j * bs; 349585535b8eSBarry Smith } else { 349685535b8eSBarry Smith value = v + j * (stepval + bs) * bs + i * bs; 349785535b8eSBarry Smith } 349885535b8eSBarry Smith for (ii = 0; ii < bs; ii++, value += stepval) { 3499ad540459SPierre Jolivet for (jj = 0; jj < bs; jj++) *barray++ = *value++; 350085535b8eSBarry Smith } 350185535b8eSBarry Smith barray -= bs2; 350285535b8eSBarry Smith } 350385535b8eSBarry Smith 350485535b8eSBarry Smith if (in[j] >= cstart && in[j] < cend) { 350585535b8eSBarry Smith col = in[j] - cstart; 35069566063dSJacob Faibussowitsch PetscCall(MatSetValuesBlocked_SeqBAIJ_Inlined(baij->A, row, col, barray, addv, im[i], in[j])); 3507f7d195e4SLawrence Mitchell } else if (in[j] < 0) { 3508f7d195e4SLawrence Mitchell continue; 3509f7d195e4SLawrence Mitchell } else { 3510f7d195e4SLawrence Mitchell PetscCheck(in[j] < baij->Nbs, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large, col %" PetscInt_FMT " max %" PetscInt_FMT, in[j], baij->Nbs - 1); 351185535b8eSBarry Smith if (mat->was_assembled) { 351248a46eb9SPierre Jolivet if (!baij->colmap) PetscCall(MatCreateColmap_MPIBAIJ_Private(mat)); 351385535b8eSBarry Smith 351485535b8eSBarry Smith #if defined(PETSC_USE_DEBUG) 351585535b8eSBarry Smith #if defined(PETSC_USE_CTABLE) 35169371c9d4SSatish Balay { 35179371c9d4SSatish Balay PetscInt data; 3518eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIGetWithDefault(baij->colmap, in[j] + 1, 0, &data)); 351908401ef6SPierre Jolivet PetscCheck((data - 1) % bs == 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Incorrect colmap"); 352085535b8eSBarry Smith } 352185535b8eSBarry Smith #else 352208401ef6SPierre Jolivet PetscCheck((baij->colmap[in[j]] - 1) % bs == 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Incorrect colmap"); 352385535b8eSBarry Smith #endif 352485535b8eSBarry Smith #endif 352585535b8eSBarry Smith #if defined(PETSC_USE_CTABLE) 3526eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIGetWithDefault(baij->colmap, in[j] + 1, 0, &col)); 352785535b8eSBarry Smith col = (col - 1) / bs; 352885535b8eSBarry Smith #else 352985535b8eSBarry Smith col = (baij->colmap[in[j]] - 1) / bs; 353085535b8eSBarry Smith #endif 3531f4f49eeaSPierre Jolivet if (col < 0 && !((Mat_SeqBAIJ *)baij->A->data)->nonew) { 35329566063dSJacob Faibussowitsch PetscCall(MatDisAssemble_MPIBAIJ(mat)); 353385535b8eSBarry Smith col = in[j]; 353485535b8eSBarry Smith } 353526fbe8dcSKarl Rupp } else col = in[j]; 35369566063dSJacob Faibussowitsch PetscCall(MatSetValuesBlocked_SeqBAIJ_Inlined(baij->B, row, col, barray, addv, im[i], in[j])); 353785535b8eSBarry Smith } 353885535b8eSBarry Smith } 353985535b8eSBarry Smith } else { 354085535b8eSBarry Smith if (!baij->donotstash) { 354185535b8eSBarry Smith if (roworiented) { 35429566063dSJacob Faibussowitsch PetscCall(MatStashValuesRowBlocked_Private(&mat->bstash, im[i], n, in, v, m, n, i)); 354385535b8eSBarry Smith } else { 35449566063dSJacob Faibussowitsch PetscCall(MatStashValuesColBlocked_Private(&mat->bstash, im[i], n, in, v, m, n, i)); 354585535b8eSBarry Smith } 354685535b8eSBarry Smith } 354785535b8eSBarry Smith } 354885535b8eSBarry Smith } 354985535b8eSBarry Smith 355085535b8eSBarry Smith /* task normally handled by MatSetValuesBlocked() */ 35519566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(MAT_SetValues, mat, 0, 0, 0)); 35523ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 355385535b8eSBarry Smith } 3554dfb205c3SBarry Smith 3555dfb205c3SBarry Smith /*@ 3556d8a51d2aSBarry Smith MatCreateMPIBAIJWithArrays - creates a `MATMPIBAIJ` matrix using arrays that contain in standard block CSR format for the local rows. 3557dfb205c3SBarry Smith 3558d083f849SBarry Smith Collective 3559dfb205c3SBarry Smith 3560dfb205c3SBarry Smith Input Parameters: 3561dfb205c3SBarry Smith + comm - MPI communicator 3562dfb205c3SBarry Smith . bs - the block size, only a block size of 1 is supported 356311a5261eSBarry Smith . m - number of local rows (Cannot be `PETSC_DECIDE`) 3564dfb205c3SBarry Smith . n - This value should be the same as the local size used in creating the 3565d8a51d2aSBarry Smith x vector for the matrix-vector product $ y = Ax $. (or `PETSC_DECIDE` to have 3566d8a51d2aSBarry Smith calculated if `N` is given) For square matrices `n` is almost always `m`. 3567d8a51d2aSBarry Smith . M - number of global rows (or `PETSC_DETERMINE` to have calculated if `m` is given) 3568d8a51d2aSBarry Smith . N - number of global columns (or `PETSC_DETERMINE` to have calculated if `n` is given) 3569483a2f95SBarry Smith . i - row indices; that is i[0] = 0, i[row] = i[row-1] + number of block elements in that rowth block row of the matrix 3570dfb205c3SBarry Smith . j - column indices 3571dfb205c3SBarry Smith - a - matrix values 3572dfb205c3SBarry Smith 3573dfb205c3SBarry Smith Output Parameter: 3574dfb205c3SBarry Smith . mat - the matrix 3575dfb205c3SBarry Smith 3576dfb205c3SBarry Smith Level: intermediate 3577dfb205c3SBarry Smith 3578dfb205c3SBarry Smith Notes: 357967be906fSBarry Smith The `i`, `j`, and `a` arrays ARE copied by this routine into the internal format used by PETSc; 3580dfb205c3SBarry Smith thus you CANNOT change the matrix entries by changing the values of a[] after you have 358111a5261eSBarry Smith called this routine. Use `MatCreateMPIAIJWithSplitArrays()` to avoid needing to copy the arrays. 3582dfb205c3SBarry Smith 35833adadaf3SJed Brown The order of the entries in values is the same as the block compressed sparse row storage format; that is, it is 35843adadaf3SJed Brown the same as a three dimensional array in Fortran values(bs,bs,nnz) that contains the first column of the first 35853adadaf3SJed Brown block, followed by the second column of the first block etc etc. That is, the blocks are contiguous in memory 35863adadaf3SJed Brown with column-major ordering within blocks. 35873adadaf3SJed Brown 3588d8a51d2aSBarry Smith The `i` and `j` indices are 0 based, and `i` indices are indices corresponding to the local `j` array. 3589dfb205c3SBarry Smith 359067be906fSBarry Smith .seealso: `Mat`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`, 35917d2c085eSPierre Jolivet `MATMPIAIJ`, `MatCreateAIJ()`, `MatCreateMPIAIJWithSplitArrays()` 3592dfb205c3SBarry Smith @*/ 3593d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIBAIJWithArrays(MPI_Comm comm, PetscInt bs, PetscInt m, PetscInt n, PetscInt M, PetscInt N, const PetscInt i[], const PetscInt j[], const PetscScalar a[], Mat *mat) 3594d71ae5a4SJacob Faibussowitsch { 3595dfb205c3SBarry Smith PetscFunctionBegin; 35965f80ce2aSJacob Faibussowitsch PetscCheck(!i[0], PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "i (row indices) must start with 0"); 35975f80ce2aSJacob Faibussowitsch PetscCheck(m >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "local number of rows (m) cannot be PETSC_DECIDE, or negative"); 35989566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, mat)); 35999566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*mat, m, n, M, N)); 36009566063dSJacob Faibussowitsch PetscCall(MatSetType(*mat, MATMPIBAIJ)); 36019566063dSJacob Faibussowitsch PetscCall(MatSetBlockSize(*mat, bs)); 36029566063dSJacob Faibussowitsch PetscCall(MatSetUp(*mat)); 36039566063dSJacob Faibussowitsch PetscCall(MatSetOption(*mat, MAT_ROW_ORIENTED, PETSC_FALSE)); 36049566063dSJacob Faibussowitsch PetscCall(MatMPIBAIJSetPreallocationCSR(*mat, bs, i, j, a)); 36059566063dSJacob Faibussowitsch PetscCall(MatSetOption(*mat, MAT_ROW_ORIENTED, PETSC_TRUE)); 36063ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3607dfb205c3SBarry Smith } 3608e561ad89SHong Zhang 3609d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIMatConcatenateSeqMat_MPIBAIJ(MPI_Comm comm, Mat inmat, PetscInt n, MatReuse scall, Mat *outmat) 3610d71ae5a4SJacob Faibussowitsch { 3611bd153df0SHong Zhang PetscInt m, N, i, rstart, nnz, Ii, bs, cbs; 3612bd153df0SHong Zhang PetscInt *indx; 3613bd153df0SHong Zhang PetscScalar *values; 3614e561ad89SHong Zhang 3615e561ad89SHong Zhang PetscFunctionBegin; 36169566063dSJacob Faibussowitsch PetscCall(MatGetSize(inmat, &m, &N)); 3617bd153df0SHong Zhang if (scall == MAT_INITIAL_MATRIX) { /* symbolic phase */ 3618bd153df0SHong Zhang Mat_SeqBAIJ *a = (Mat_SeqBAIJ *)inmat->data; 36192c6ba4edSHong Zhang PetscInt *dnz, *onz, mbs, Nbs, nbs; 3620bd153df0SHong Zhang PetscInt *bindx, rmax = a->rmax, j; 362177f764caSHong Zhang PetscMPIInt rank, size; 3622e561ad89SHong Zhang 36239566063dSJacob Faibussowitsch PetscCall(MatGetBlockSizes(inmat, &bs, &cbs)); 36249371c9d4SSatish Balay mbs = m / bs; 36259371c9d4SSatish Balay Nbs = N / cbs; 362648a46eb9SPierre Jolivet if (n == PETSC_DECIDE) PetscCall(PetscSplitOwnershipBlock(comm, cbs, &n, &N)); 3627da91a574SPierre Jolivet nbs = n / cbs; 3628e561ad89SHong Zhang 36299566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(rmax, &bindx)); 3630d0609cedSBarry Smith MatPreallocateBegin(comm, mbs, nbs, dnz, onz); /* inline function, output __end and __rstart are used below */ 363177f764caSHong Zhang 36329566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 36339566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &size)); 363477f764caSHong Zhang if (rank == size - 1) { 363577f764caSHong Zhang /* Check sum(nbs) = Nbs */ 36365f80ce2aSJacob Faibussowitsch PetscCheck(__end == Nbs, PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "Sum of local block columns %" PetscInt_FMT " != global block columns %" PetscInt_FMT, __end, Nbs); 363777f764caSHong Zhang } 363877f764caSHong Zhang 3639d0609cedSBarry Smith rstart = __rstart; /* block rstart of *outmat; see inline function MatPreallocateBegin */ 3640bd153df0SHong Zhang for (i = 0; i < mbs; i++) { 36419566063dSJacob Faibussowitsch PetscCall(MatGetRow_SeqBAIJ(inmat, i * bs, &nnz, &indx, NULL)); /* non-blocked nnz and indx */ 3642647a6520SHong Zhang nnz = nnz / bs; 3643647a6520SHong Zhang for (j = 0; j < nnz; j++) bindx[j] = indx[j * bs] / bs; 36449566063dSJacob Faibussowitsch PetscCall(MatPreallocateSet(i + rstart, nnz, bindx, dnz, onz)); 36459566063dSJacob Faibussowitsch PetscCall(MatRestoreRow_SeqBAIJ(inmat, i * bs, &nnz, &indx, NULL)); 3646e561ad89SHong Zhang } 36479566063dSJacob Faibussowitsch PetscCall(PetscFree(bindx)); 3648e561ad89SHong Zhang 36499566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, outmat)); 36509566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*outmat, m, n, PETSC_DETERMINE, PETSC_DETERMINE)); 36519566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizes(*outmat, bs, cbs)); 36529566063dSJacob Faibussowitsch PetscCall(MatSetType(*outmat, MATBAIJ)); 36539566063dSJacob Faibussowitsch PetscCall(MatSeqBAIJSetPreallocation(*outmat, bs, 0, dnz)); 36549566063dSJacob Faibussowitsch PetscCall(MatMPIBAIJSetPreallocation(*outmat, bs, 0, dnz, 0, onz)); 3655d0609cedSBarry Smith MatPreallocateEnd(dnz, onz); 36569566063dSJacob Faibussowitsch PetscCall(MatSetOption(*outmat, MAT_NO_OFF_PROC_ENTRIES, PETSC_TRUE)); 3657e561ad89SHong Zhang } 3658e561ad89SHong Zhang 3659bd153df0SHong Zhang /* numeric phase */ 36609566063dSJacob Faibussowitsch PetscCall(MatGetBlockSizes(inmat, &bs, &cbs)); 36619566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(*outmat, &rstart, NULL)); 3662e561ad89SHong Zhang 3663e561ad89SHong Zhang for (i = 0; i < m; i++) { 36649566063dSJacob Faibussowitsch PetscCall(MatGetRow_SeqBAIJ(inmat, i, &nnz, &indx, &values)); 3665e561ad89SHong Zhang Ii = i + rstart; 36669566063dSJacob Faibussowitsch PetscCall(MatSetValues(*outmat, 1, &Ii, nnz, indx, values, INSERT_VALUES)); 36679566063dSJacob Faibussowitsch PetscCall(MatRestoreRow_SeqBAIJ(inmat, i, &nnz, &indx, &values)); 3668e561ad89SHong Zhang } 36699566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(*outmat, MAT_FINAL_ASSEMBLY)); 36709566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(*outmat, MAT_FINAL_ASSEMBLY)); 36713ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3672e561ad89SHong Zhang } 3673