xref: /petsc/src/mat/impls/baij/mpi/mpibaij.c (revision 8a62d963fa55bc78cd3ad0b969369715962ba40f)
179bdfe76SSatish Balay 
2e090d566SSatish Balay #include "src/mat/impls/baij/mpi/mpibaij.h"   /*I  "petscmat.h"  I*/
379bdfe76SSatish Balay 
4dfbe8321SBarry Smith EXTERN PetscErrorCode MatSetUpMultiply_MPIBAIJ(Mat);
5dfbe8321SBarry Smith EXTERN PetscErrorCode DisAssemble_MPIBAIJ(Mat);
6b24ad042SBarry Smith EXTERN PetscErrorCode MatIncreaseOverlap_MPIBAIJ(Mat,PetscInt,IS[],PetscInt);
7b24ad042SBarry Smith EXTERN PetscErrorCode MatGetSubMatrices_MPIBAIJ(Mat,PetscInt,const IS[],const IS[],MatReuse,Mat *[]);
8b24ad042SBarry Smith EXTERN PetscErrorCode MatGetValues_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt [],PetscScalar []);
9b24ad042SBarry Smith EXTERN PetscErrorCode MatSetValues_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt [],const PetscScalar [],InsertMode);
10b24ad042SBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode);
11b24ad042SBarry Smith EXTERN PetscErrorCode MatGetRow_SeqBAIJ(Mat,PetscInt,PetscInt*,PetscInt*[],PetscScalar*[]);
12b24ad042SBarry Smith EXTERN PetscErrorCode MatRestoreRow_SeqBAIJ(Mat,PetscInt,PetscInt*,PetscInt*[],PetscScalar*[]);
13dfbe8321SBarry Smith EXTERN PetscErrorCode MatPrintHelp_SeqBAIJ(Mat);
14dfbe8321SBarry Smith EXTERN PetscErrorCode MatZeroRows_SeqBAIJ(Mat,IS,const PetscScalar*);
1593fea6afSBarry Smith 
1693fea6afSBarry Smith /*  UGLY, ugly, ugly
1787828ca2SBarry Smith    When MatScalar == PetscScalar the function MatSetValuesBlocked_MPIBAIJ_MatScalar() does
1893fea6afSBarry Smith    not exist. Otherwise ..._MatScalar() takes matrix elements in single precision and
1993fea6afSBarry Smith    inserts them into the single precision data structure. The function MatSetValuesBlocked_MPIBAIJ()
2093fea6afSBarry Smith    converts the entries into single precision and then calls ..._MatScalar() to put them
2193fea6afSBarry Smith    into the single precision data structures.
2293fea6afSBarry Smith */
2393fea6afSBarry Smith #if defined(PETSC_USE_MAT_SINGLE)
24b24ad042SBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_SeqBAIJ_MatScalar(Mat,PetscInt,const PetscInt*,PetscInt,const PetscInt*,const MatScalar*,InsertMode);
25b24ad042SBarry Smith EXTERN PetscErrorCode MatSetValues_MPIBAIJ_MatScalar(Mat,PetscInt,const PetscInt*,PetscInt,const PetscInt*,const MatScalar*,InsertMode);
26b24ad042SBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_MPIBAIJ_MatScalar(Mat,PetscInt,const PetscInt*,PetscInt,const PetscInt*,const MatScalar*,InsertMode);
27b24ad042SBarry Smith EXTERN PetscErrorCode MatSetValues_MPIBAIJ_HT_MatScalar(Mat,PetscInt,const PetscInt*,PetscInt,const PetscInt*,const MatScalar*,InsertMode);
28b24ad042SBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_MPIBAIJ_HT_MatScalar(Mat,PetscInt,const PetscInt*,PetscInt,const PetscInt*,const MatScalar*,InsertMode);
2993fea6afSBarry Smith #else
306fa18ffdSBarry Smith #define MatSetValuesBlocked_SeqBAIJ_MatScalar      MatSetValuesBlocked_SeqBAIJ
3193fea6afSBarry Smith #define MatSetValues_MPIBAIJ_MatScalar             MatSetValues_MPIBAIJ
3293fea6afSBarry Smith #define MatSetValuesBlocked_MPIBAIJ_MatScalar      MatSetValuesBlocked_MPIBAIJ
336fa18ffdSBarry Smith #define MatSetValues_MPIBAIJ_HT_MatScalar          MatSetValues_MPIBAIJ_HT
346fa18ffdSBarry Smith #define MatSetValuesBlocked_MPIBAIJ_HT_MatScalar   MatSetValuesBlocked_MPIBAIJ_HT
3593fea6afSBarry Smith #endif
363b2fbd54SBarry Smith 
374a2ae208SSatish Balay #undef __FUNCT__
384a2ae208SSatish Balay #define __FUNCT__ "MatGetRowMax_MPIBAIJ"
39dfbe8321SBarry Smith PetscErrorCode MatGetRowMax_MPIBAIJ(Mat A,Vec v)
407843d17aSBarry Smith {
417843d17aSBarry Smith   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)A->data;
42dfbe8321SBarry Smith   PetscErrorCode ierr;
43b24ad042SBarry Smith   PetscInt       i;
4487828ca2SBarry Smith   PetscScalar    *va,*vb;
457843d17aSBarry Smith   Vec            vtmp;
467843d17aSBarry Smith 
477843d17aSBarry Smith   PetscFunctionBegin;
487843d17aSBarry Smith 
497843d17aSBarry Smith   ierr = MatGetRowMax(a->A,v);CHKERRQ(ierr);
501ebc52fbSHong Zhang   ierr = VecGetArray(v,&va);CHKERRQ(ierr);
517843d17aSBarry Smith 
52ac355199SBarry Smith   ierr = VecCreateSeq(PETSC_COMM_SELF,A->m,&vtmp);CHKERRQ(ierr);
537843d17aSBarry Smith   ierr = MatGetRowMax(a->B,vtmp);CHKERRQ(ierr);
541ebc52fbSHong Zhang   ierr = VecGetArray(vtmp,&vb);CHKERRQ(ierr);
557843d17aSBarry Smith 
56273d9f13SBarry Smith   for (i=0; i<A->m; i++){
57273d9f13SBarry Smith     if (PetscAbsScalar(va[i]) < PetscAbsScalar(vb[i])) va[i] = vb[i];
587843d17aSBarry Smith   }
597843d17aSBarry Smith 
601ebc52fbSHong Zhang   ierr = VecRestoreArray(v,&va);CHKERRQ(ierr);
611ebc52fbSHong Zhang   ierr = VecRestoreArray(vtmp,&vb);CHKERRQ(ierr);
62ac355199SBarry Smith   ierr = VecDestroy(vtmp);CHKERRQ(ierr);
637843d17aSBarry Smith 
647843d17aSBarry Smith   PetscFunctionReturn(0);
657843d17aSBarry Smith }
667843d17aSBarry Smith 
677fc3c18eSBarry Smith EXTERN_C_BEGIN
684a2ae208SSatish Balay #undef __FUNCT__
694a2ae208SSatish Balay #define __FUNCT__ "MatStoreValues_MPIBAIJ"
70dfbe8321SBarry Smith PetscErrorCode MatStoreValues_MPIBAIJ(Mat mat)
717fc3c18eSBarry Smith {
727fc3c18eSBarry Smith   Mat_MPIBAIJ    *aij = (Mat_MPIBAIJ *)mat->data;
73dfbe8321SBarry Smith   PetscErrorCode ierr;
747fc3c18eSBarry Smith 
757fc3c18eSBarry Smith   PetscFunctionBegin;
767fc3c18eSBarry Smith   ierr = MatStoreValues(aij->A);CHKERRQ(ierr);
777fc3c18eSBarry Smith   ierr = MatStoreValues(aij->B);CHKERRQ(ierr);
787fc3c18eSBarry Smith   PetscFunctionReturn(0);
797fc3c18eSBarry Smith }
807fc3c18eSBarry Smith EXTERN_C_END
817fc3c18eSBarry Smith 
827fc3c18eSBarry Smith EXTERN_C_BEGIN
834a2ae208SSatish Balay #undef __FUNCT__
844a2ae208SSatish Balay #define __FUNCT__ "MatRetrieveValues_MPIBAIJ"
85dfbe8321SBarry Smith PetscErrorCode MatRetrieveValues_MPIBAIJ(Mat mat)
867fc3c18eSBarry Smith {
877fc3c18eSBarry Smith   Mat_MPIBAIJ    *aij = (Mat_MPIBAIJ *)mat->data;
88dfbe8321SBarry Smith   PetscErrorCode ierr;
897fc3c18eSBarry Smith 
907fc3c18eSBarry Smith   PetscFunctionBegin;
917fc3c18eSBarry Smith   ierr = MatRetrieveValues(aij->A);CHKERRQ(ierr);
927fc3c18eSBarry Smith   ierr = MatRetrieveValues(aij->B);CHKERRQ(ierr);
937fc3c18eSBarry Smith   PetscFunctionReturn(0);
947fc3c18eSBarry Smith }
957fc3c18eSBarry Smith EXTERN_C_END
967fc3c18eSBarry Smith 
97537820f0SBarry Smith /*
98537820f0SBarry Smith      Local utility routine that creates a mapping from the global column
9957b952d6SSatish Balay    number to the local number in the off-diagonal part of the local
10057b952d6SSatish Balay    storage of the matrix.  This is done in a non scable way since the
10157b952d6SSatish Balay    length of colmap equals the global matrix length.
10257b952d6SSatish Balay */
1034a2ae208SSatish Balay #undef __FUNCT__
1044a2ae208SSatish Balay #define __FUNCT__ "CreateColmap_MPIBAIJ_Private"
105dfbe8321SBarry Smith PetscErrorCode CreateColmap_MPIBAIJ_Private(Mat mat)
10657b952d6SSatish Balay {
10757b952d6SSatish Balay   Mat_MPIBAIJ    *baij = (Mat_MPIBAIJ*)mat->data;
10857b952d6SSatish Balay   Mat_SeqBAIJ    *B = (Mat_SeqBAIJ*)baij->B->data;
1096849ba73SBarry Smith   PetscErrorCode ierr;
110521d7252SBarry Smith   PetscInt       nbs = B->nbs,i,bs=mat->bs;
11157b952d6SSatish Balay 
112d64ed03dSBarry Smith   PetscFunctionBegin;
113aa482453SBarry Smith #if defined (PETSC_USE_CTABLE)
114f14a1c24SBarry Smith   ierr = PetscTableCreate(baij->nbs,&baij->colmap);CHKERRQ(ierr);
11548e59246SSatish Balay   for (i=0; i<nbs; i++){
1160f5bd95cSBarry Smith     ierr = PetscTableAdd(baij->colmap,baij->garray[i]+1,i*bs+1);CHKERRQ(ierr);
11748e59246SSatish Balay   }
11848e59246SSatish Balay #else
119b24ad042SBarry Smith   ierr = PetscMalloc((baij->Nbs+1)*sizeof(PetscInt),&baij->colmap);CHKERRQ(ierr);
12052e6d16bSBarry Smith   ierr = PetscLogObjectMemory(mat,baij->Nbs*sizeof(PetscInt));CHKERRQ(ierr);
121b24ad042SBarry Smith   ierr = PetscMemzero(baij->colmap,baij->Nbs*sizeof(PetscInt));CHKERRQ(ierr);
122928fc39bSSatish Balay   for (i=0; i<nbs; i++) baij->colmap[baij->garray[i]] = i*bs+1;
12348e59246SSatish Balay #endif
1243a40ed3dSBarry Smith   PetscFunctionReturn(0);
12557b952d6SSatish Balay }
12657b952d6SSatish Balay 
12780c1aa95SSatish Balay #define CHUNKSIZE  10
12880c1aa95SSatish Balay 
129f5e9677aSSatish Balay #define  MatSetValues_SeqBAIJ_A_Private(row,col,value,addv) \
13080c1aa95SSatish Balay { \
13180c1aa95SSatish Balay  \
13280c1aa95SSatish Balay     brow = row/bs;  \
13380c1aa95SSatish Balay     rp   = aj + ai[brow]; ap = aa + bs2*ai[brow]; \
134ac7a638eSSatish Balay     rmax = aimax[brow]; nrow = ailen[brow]; \
13580c1aa95SSatish Balay       bcol = col/bs; \
13680c1aa95SSatish Balay       ridx = row % bs; cidx = col % bs; \
137ab26458aSBarry Smith       low = 0; high = nrow; \
138ab26458aSBarry Smith       while (high-low > 3) { \
139ab26458aSBarry Smith         t = (low+high)/2; \
140ab26458aSBarry Smith         if (rp[t] > bcol) high = t; \
141ab26458aSBarry Smith         else              low  = t; \
142ab26458aSBarry Smith       } \
143ab26458aSBarry Smith       for (_i=low; _i<high; _i++) { \
14480c1aa95SSatish Balay         if (rp[_i] > bcol) break; \
14580c1aa95SSatish Balay         if (rp[_i] == bcol) { \
14680c1aa95SSatish Balay           bap  = ap +  bs2*_i + bs*cidx + ridx; \
147eada6651SSatish Balay           if (addv == ADD_VALUES) *bap += value;  \
148eada6651SSatish Balay           else                    *bap  = value;  \
149ac7a638eSSatish Balay           goto a_noinsert; \
15080c1aa95SSatish Balay         } \
15180c1aa95SSatish Balay       } \
15289280ab3SLois Curfman McInnes       if (a->nonew == 1) goto a_noinsert; \
15377431f27SBarry Smith       else if (a->nonew == -1) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \
15480c1aa95SSatish Balay       if (nrow >= rmax) { \
15580c1aa95SSatish Balay         /* there is no extra room in row, therefore enlarge */ \
156b24ad042SBarry Smith         PetscInt       new_nz = ai[a->mbs] + CHUNKSIZE,len,*new_i,*new_j; \
1573eda8832SBarry Smith         MatScalar *new_a; \
15880c1aa95SSatish Balay  \
15977431f27SBarry Smith         if (a->nonew == -2) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) in the matrix", row, col); \
16089280ab3SLois Curfman McInnes  \
16180c1aa95SSatish Balay         /* malloc new storage space */ \
162b24ad042SBarry Smith         len     = new_nz*(sizeof(PetscInt)+bs2*sizeof(MatScalar))+(a->mbs+1)*sizeof(PetscInt); \
16382502324SSatish Balay         ierr = PetscMalloc(len,&new_a);CHKERRQ(ierr); \
164b24ad042SBarry Smith         new_j   = (PetscInt*)(new_a + bs2*new_nz); \
16580c1aa95SSatish Balay         new_i   = new_j + new_nz; \
16680c1aa95SSatish Balay  \
16780c1aa95SSatish Balay         /* copy over old data into new slots */ \
16880c1aa95SSatish Balay         for (ii=0; ii<brow+1; ii++) {new_i[ii] = ai[ii];} \
16980c1aa95SSatish Balay         for (ii=brow+1; ii<a->mbs+1; ii++) {new_i[ii] = ai[ii]+CHUNKSIZE;} \
170b24ad042SBarry Smith         ierr = PetscMemcpy(new_j,aj,(ai[brow]+nrow)*sizeof(PetscInt));CHKERRQ(ierr); \
17180c1aa95SSatish Balay         len = (new_nz - CHUNKSIZE - ai[brow] - nrow); \
172b24ad042SBarry Smith         ierr = PetscMemcpy(new_j+ai[brow]+nrow+CHUNKSIZE,aj+ai[brow]+nrow,len*sizeof(PetscInt));CHKERRQ(ierr); \
1733eda8832SBarry Smith         ierr = PetscMemcpy(new_a,aa,(ai[brow]+nrow)*bs2*sizeof(MatScalar));CHKERRQ(ierr); \
17487828ca2SBarry Smith         ierr = PetscMemzero(new_a+bs2*(ai[brow]+nrow),bs2*CHUNKSIZE*sizeof(PetscScalar));CHKERRQ(ierr); \
175549d3d68SSatish Balay         ierr = PetscMemcpy(new_a+bs2*(ai[brow]+nrow+CHUNKSIZE), \
1763eda8832SBarry Smith                     aa+bs2*(ai[brow]+nrow),bs2*len*sizeof(MatScalar));CHKERRQ(ierr);  \
17780c1aa95SSatish Balay         /* free up old matrix storage */ \
178606d414cSSatish Balay         ierr = PetscFree(a->a);CHKERRQ(ierr);  \
179606d414cSSatish Balay         if (!a->singlemalloc) { \
180606d414cSSatish Balay           ierr = PetscFree(a->i);CHKERRQ(ierr); \
181606d414cSSatish Balay           ierr = PetscFree(a->j);CHKERRQ(ierr);\
182606d414cSSatish Balay         } \
18380c1aa95SSatish Balay         aa = a->a = new_a; ai = a->i = new_i; aj = a->j = new_j;  \
1847c922b88SBarry Smith         a->singlemalloc = PETSC_TRUE; \
18580c1aa95SSatish Balay  \
18680c1aa95SSatish Balay         rp   = aj + ai[brow]; ap = aa + bs2*ai[brow]; \
187ac7a638eSSatish Balay         rmax = aimax[brow] = aimax[brow] + CHUNKSIZE; \
18852e6d16bSBarry Smith         ierr = PetscLogObjectMemory(A,CHUNKSIZE*(sizeof(PetscInt) + bs2*sizeof(MatScalar)));CHKERRQ(ierr); \
18980c1aa95SSatish Balay         a->maxnz += bs2*CHUNKSIZE; \
19080c1aa95SSatish Balay         a->reallocs++; \
19180c1aa95SSatish Balay         a->nz++; \
19280c1aa95SSatish Balay       } \
19380c1aa95SSatish Balay       N = nrow++ - 1;  \
19480c1aa95SSatish Balay       /* shift up all the later entries in this row */ \
19580c1aa95SSatish Balay       for (ii=N; ii>=_i; ii--) { \
19680c1aa95SSatish Balay         rp[ii+1] = rp[ii]; \
1973eda8832SBarry Smith         ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \
19880c1aa95SSatish Balay       } \
1993eda8832SBarry Smith       if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr); }  \
20080c1aa95SSatish Balay       rp[_i]                      = bcol;  \
20180c1aa95SSatish Balay       ap[bs2*_i + bs*cidx + ridx] = value;  \
202ac7a638eSSatish Balay       a_noinsert:; \
20380c1aa95SSatish Balay     ailen[brow] = nrow; \
20480c1aa95SSatish Balay }
20557b952d6SSatish Balay 
206ac7a638eSSatish Balay #define  MatSetValues_SeqBAIJ_B_Private(row,col,value,addv) \
207ac7a638eSSatish Balay { \
208ac7a638eSSatish Balay     brow = row/bs;  \
209ac7a638eSSatish Balay     rp   = bj + bi[brow]; ap = ba + bs2*bi[brow]; \
210ac7a638eSSatish Balay     rmax = bimax[brow]; nrow = bilen[brow]; \
211ac7a638eSSatish Balay       bcol = col/bs; \
212ac7a638eSSatish Balay       ridx = row % bs; cidx = col % bs; \
213ac7a638eSSatish Balay       low = 0; high = nrow; \
214ac7a638eSSatish Balay       while (high-low > 3) { \
215ac7a638eSSatish Balay         t = (low+high)/2; \
216ac7a638eSSatish Balay         if (rp[t] > bcol) high = t; \
217ac7a638eSSatish Balay         else              low  = t; \
218ac7a638eSSatish Balay       } \
219ac7a638eSSatish Balay       for (_i=low; _i<high; _i++) { \
220ac7a638eSSatish Balay         if (rp[_i] > bcol) break; \
221ac7a638eSSatish Balay         if (rp[_i] == bcol) { \
222ac7a638eSSatish Balay           bap  = ap +  bs2*_i + bs*cidx + ridx; \
223ac7a638eSSatish Balay           if (addv == ADD_VALUES) *bap += value;  \
224ac7a638eSSatish Balay           else                    *bap  = value;  \
225ac7a638eSSatish Balay           goto b_noinsert; \
226ac7a638eSSatish Balay         } \
227ac7a638eSSatish Balay       } \
22889280ab3SLois Curfman McInnes       if (b->nonew == 1) goto b_noinsert; \
22977431f27SBarry Smith       else if (b->nonew == -1) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \
230ac7a638eSSatish Balay       if (nrow >= rmax) { \
231ac7a638eSSatish Balay         /* there is no extra room in row, therefore enlarge */ \
232b24ad042SBarry Smith         PetscInt       new_nz = bi[b->mbs] + CHUNKSIZE,len,*new_i,*new_j; \
2333eda8832SBarry Smith         MatScalar *new_a; \
234ac7a638eSSatish Balay  \
23577431f27SBarry Smith         if (b->nonew == -2) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) in the matrix", row, col); \
23689280ab3SLois Curfman McInnes  \
237ac7a638eSSatish Balay         /* malloc new storage space */ \
238b24ad042SBarry Smith         len     = new_nz*(sizeof(PetscInt)+bs2*sizeof(MatScalar))+(b->mbs+1)*sizeof(PetscInt); \
23982502324SSatish Balay         ierr    = PetscMalloc(len,&new_a);CHKERRQ(ierr); \
240b24ad042SBarry Smith         new_j   = (PetscInt*)(new_a + bs2*new_nz); \
241ac7a638eSSatish Balay         new_i   = new_j + new_nz; \
242ac7a638eSSatish Balay  \
243ac7a638eSSatish Balay         /* copy over old data into new slots */ \
244ac7a638eSSatish Balay         for (ii=0; ii<brow+1; ii++) {new_i[ii] = bi[ii];} \
24574c639caSSatish Balay         for (ii=brow+1; ii<b->mbs+1; ii++) {new_i[ii] = bi[ii]+CHUNKSIZE;} \
246b24ad042SBarry Smith         ierr = PetscMemcpy(new_j,bj,(bi[brow]+nrow)*sizeof(PetscInt));CHKERRQ(ierr); \
247ac7a638eSSatish Balay         len  = (new_nz - CHUNKSIZE - bi[brow] - nrow); \
248b24ad042SBarry Smith         ierr = PetscMemcpy(new_j+bi[brow]+nrow+CHUNKSIZE,bj+bi[brow]+nrow,len*sizeof(PetscInt));CHKERRQ(ierr); \
2493eda8832SBarry Smith         ierr = PetscMemcpy(new_a,ba,(bi[brow]+nrow)*bs2*sizeof(MatScalar));CHKERRQ(ierr); \
2503eda8832SBarry Smith         ierr = PetscMemzero(new_a+bs2*(bi[brow]+nrow),bs2*CHUNKSIZE*sizeof(MatScalar));CHKERRQ(ierr); \
251549d3d68SSatish Balay         ierr = PetscMemcpy(new_a+bs2*(bi[brow]+nrow+CHUNKSIZE), \
2523eda8832SBarry Smith                     ba+bs2*(bi[brow]+nrow),bs2*len*sizeof(MatScalar));CHKERRQ(ierr);  \
253ac7a638eSSatish Balay         /* free up old matrix storage */ \
254606d414cSSatish Balay         ierr = PetscFree(b->a);CHKERRQ(ierr);  \
255606d414cSSatish Balay         if (!b->singlemalloc) { \
256606d414cSSatish Balay           ierr = PetscFree(b->i);CHKERRQ(ierr); \
257606d414cSSatish Balay           ierr = PetscFree(b->j);CHKERRQ(ierr); \
258606d414cSSatish Balay         } \
25974c639caSSatish Balay         ba = b->a = new_a; bi = b->i = new_i; bj = b->j = new_j;  \
2607c922b88SBarry Smith         b->singlemalloc = PETSC_TRUE; \
261ac7a638eSSatish Balay  \
262ac7a638eSSatish Balay         rp   = bj + bi[brow]; ap = ba + bs2*bi[brow]; \
263ac7a638eSSatish Balay         rmax = bimax[brow] = bimax[brow] + CHUNKSIZE; \
26452e6d16bSBarry Smith         ierr = PetscLogObjectMemory(B,CHUNKSIZE*(sizeof(PetscInt) + bs2*sizeof(MatScalar)));CHKERRQ(ierr); \
26574c639caSSatish Balay         b->maxnz += bs2*CHUNKSIZE; \
26674c639caSSatish Balay         b->reallocs++; \
26774c639caSSatish Balay         b->nz++; \
268ac7a638eSSatish Balay       } \
269ac7a638eSSatish Balay       N = nrow++ - 1;  \
270ac7a638eSSatish Balay       /* shift up all the later entries in this row */ \
271ac7a638eSSatish Balay       for (ii=N; ii>=_i; ii--) { \
272ac7a638eSSatish Balay         rp[ii+1] = rp[ii]; \
2733eda8832SBarry Smith         ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \
274ac7a638eSSatish Balay       } \
2753eda8832SBarry Smith       if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr);}  \
276ac7a638eSSatish Balay       rp[_i]                      = bcol;  \
277ac7a638eSSatish Balay       ap[bs2*_i + bs*cidx + ridx] = value;  \
278ac7a638eSSatish Balay       b_noinsert:; \
279ac7a638eSSatish Balay     bilen[brow] = nrow; \
280ac7a638eSSatish Balay }
281ac7a638eSSatish Balay 
28293fea6afSBarry Smith #if defined(PETSC_USE_MAT_SINGLE)
2834a2ae208SSatish Balay #undef __FUNCT__
2844a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_MPIBAIJ"
285b24ad042SBarry Smith PetscErrorCode MatSetValues_MPIBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv)
28657b952d6SSatish Balay {
2876fa18ffdSBarry Smith   Mat_MPIBAIJ    *b = (Mat_MPIBAIJ*)mat->data;
288dfbe8321SBarry Smith   PetscErrorCode ierr;
289b24ad042SBarry Smith   PetscInt       i,N = m*n;
2906fa18ffdSBarry Smith   MatScalar      *vsingle;
29193fea6afSBarry Smith 
29293fea6afSBarry Smith   PetscFunctionBegin;
2936fa18ffdSBarry Smith   if (N > b->setvalueslen) {
2946fa18ffdSBarry Smith     if (b->setvaluescopy) {ierr = PetscFree(b->setvaluescopy);CHKERRQ(ierr);}
29582502324SSatish Balay     ierr = PetscMalloc(N*sizeof(MatScalar),&b->setvaluescopy);CHKERRQ(ierr);
2966fa18ffdSBarry Smith     b->setvalueslen  = N;
2976fa18ffdSBarry Smith   }
2986fa18ffdSBarry Smith   vsingle = b->setvaluescopy;
2996fa18ffdSBarry Smith 
30093fea6afSBarry Smith   for (i=0; i<N; i++) {
30193fea6afSBarry Smith     vsingle[i] = v[i];
30293fea6afSBarry Smith   }
30393fea6afSBarry Smith   ierr = MatSetValues_MPIBAIJ_MatScalar(mat,m,im,n,in,vsingle,addv);CHKERRQ(ierr);
30493fea6afSBarry Smith   PetscFunctionReturn(0);
30593fea6afSBarry Smith }
30693fea6afSBarry Smith 
3074a2ae208SSatish Balay #undef __FUNCT__
3084a2ae208SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_MPIBAIJ"
309b24ad042SBarry Smith PetscErrorCode MatSetValuesBlocked_MPIBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv)
31093fea6afSBarry Smith {
3116fa18ffdSBarry Smith   Mat_MPIBAIJ    *b = (Mat_MPIBAIJ*)mat->data;
312dfbe8321SBarry Smith   PetscErrorCode ierr;
313b24ad042SBarry Smith   PetscInt       i,N = m*n*b->bs2;
3146fa18ffdSBarry Smith   MatScalar      *vsingle;
31593fea6afSBarry Smith 
31693fea6afSBarry Smith   PetscFunctionBegin;
3176fa18ffdSBarry Smith   if (N > b->setvalueslen) {
3186fa18ffdSBarry Smith     if (b->setvaluescopy) {ierr = PetscFree(b->setvaluescopy);CHKERRQ(ierr);}
31982502324SSatish Balay     ierr = PetscMalloc(N*sizeof(MatScalar),&b->setvaluescopy);CHKERRQ(ierr);
3206fa18ffdSBarry Smith     b->setvalueslen  = N;
3216fa18ffdSBarry Smith   }
3226fa18ffdSBarry Smith   vsingle = b->setvaluescopy;
32393fea6afSBarry Smith   for (i=0; i<N; i++) {
32493fea6afSBarry Smith     vsingle[i] = v[i];
32593fea6afSBarry Smith   }
32693fea6afSBarry Smith   ierr = MatSetValuesBlocked_MPIBAIJ_MatScalar(mat,m,im,n,in,vsingle,addv);CHKERRQ(ierr);
32793fea6afSBarry Smith   PetscFunctionReturn(0);
32893fea6afSBarry Smith }
3296fa18ffdSBarry Smith 
3304a2ae208SSatish Balay #undef __FUNCT__
3314a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_MPIBAIJ_HT"
332b24ad042SBarry Smith PetscErrorCode MatSetValues_MPIBAIJ_HT(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv)
3336fa18ffdSBarry Smith {
3346fa18ffdSBarry Smith   Mat_MPIBAIJ    *b = (Mat_MPIBAIJ*)mat->data;
335dfbe8321SBarry Smith   PetscErrorCode ierr;
336b24ad042SBarry Smith   PetscInt       i,N = m*n;
3376fa18ffdSBarry Smith   MatScalar      *vsingle;
3386fa18ffdSBarry Smith 
3396fa18ffdSBarry Smith   PetscFunctionBegin;
3406fa18ffdSBarry Smith   if (N > b->setvalueslen) {
3416fa18ffdSBarry Smith     if (b->setvaluescopy) {ierr = PetscFree(b->setvaluescopy);CHKERRQ(ierr);}
34282502324SSatish Balay     ierr = PetscMalloc(N*sizeof(MatScalar),&b->setvaluescopy);CHKERRQ(ierr);
3436fa18ffdSBarry Smith     b->setvalueslen  = N;
3446fa18ffdSBarry Smith   }
3456fa18ffdSBarry Smith   vsingle = b->setvaluescopy;
3466fa18ffdSBarry Smith   for (i=0; i<N; i++) {
3476fa18ffdSBarry Smith     vsingle[i] = v[i];
3486fa18ffdSBarry Smith   }
3496fa18ffdSBarry Smith   ierr = MatSetValues_MPIBAIJ_HT_MatScalar(mat,m,im,n,in,vsingle,addv);CHKERRQ(ierr);
3506fa18ffdSBarry Smith   PetscFunctionReturn(0);
3516fa18ffdSBarry Smith }
3526fa18ffdSBarry Smith 
3534a2ae208SSatish Balay #undef __FUNCT__
3544a2ae208SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_MPIBAIJ_HT"
355b24ad042SBarry Smith PetscErrorCode MatSetValuesBlocked_MPIBAIJ_HT(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv)
3566fa18ffdSBarry Smith {
3576fa18ffdSBarry Smith   Mat_MPIBAIJ    *b = (Mat_MPIBAIJ*)mat->data;
358dfbe8321SBarry Smith   PetscErrorCode ierr;
359b24ad042SBarry Smith   PetscInt       i,N = m*n*b->bs2;
3606fa18ffdSBarry Smith   MatScalar      *vsingle;
3616fa18ffdSBarry Smith 
3626fa18ffdSBarry Smith   PetscFunctionBegin;
3636fa18ffdSBarry Smith   if (N > b->setvalueslen) {
3646fa18ffdSBarry Smith     if (b->setvaluescopy) {ierr = PetscFree(b->setvaluescopy);CHKERRQ(ierr);}
36582502324SSatish Balay     ierr = PetscMalloc(N*sizeof(MatScalar),&b->setvaluescopy);CHKERRQ(ierr);
3666fa18ffdSBarry Smith     b->setvalueslen  = N;
3676fa18ffdSBarry Smith   }
3686fa18ffdSBarry Smith   vsingle = b->setvaluescopy;
3696fa18ffdSBarry Smith   for (i=0; i<N; i++) {
3706fa18ffdSBarry Smith     vsingle[i] = v[i];
3716fa18ffdSBarry Smith   }
3726fa18ffdSBarry Smith   ierr = MatSetValuesBlocked_MPIBAIJ_HT_MatScalar(mat,m,im,n,in,vsingle,addv);CHKERRQ(ierr);
3736fa18ffdSBarry Smith   PetscFunctionReturn(0);
3746fa18ffdSBarry Smith }
37593fea6afSBarry Smith #endif
37693fea6afSBarry Smith 
3774a2ae208SSatish Balay #undef __FUNCT__
378e03e44c9SSatish Balay #define __FUNCT__ "MatSetValues_MPIBAIJ_MatScalar"
379b24ad042SBarry Smith PetscErrorCode MatSetValues_MPIBAIJ_MatScalar(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const MatScalar v[],InsertMode addv)
38093fea6afSBarry Smith {
38157b952d6SSatish Balay   Mat_MPIBAIJ    *baij = (Mat_MPIBAIJ*)mat->data;
38293fea6afSBarry Smith   MatScalar      value;
383273d9f13SBarry Smith   PetscTruth     roworiented = baij->roworiented;
384dfbe8321SBarry Smith   PetscErrorCode ierr;
385b24ad042SBarry Smith   PetscInt       i,j,row,col;
386b24ad042SBarry Smith   PetscInt       rstart_orig=baij->rstart_bs;
387b24ad042SBarry Smith   PetscInt       rend_orig=baij->rend_bs,cstart_orig=baij->cstart_bs;
388521d7252SBarry Smith   PetscInt       cend_orig=baij->cend_bs,bs=mat->bs;
38957b952d6SSatish Balay 
390eada6651SSatish Balay   /* Some Variables required in the macro */
39180c1aa95SSatish Balay   Mat            A = baij->A;
39280c1aa95SSatish Balay   Mat_SeqBAIJ    *a = (Mat_SeqBAIJ*)(A)->data;
393b24ad042SBarry Smith   PetscInt       *aimax=a->imax,*ai=a->i,*ailen=a->ilen,*aj=a->j;
3943eda8832SBarry Smith   MatScalar      *aa=a->a;
395ac7a638eSSatish Balay 
396ac7a638eSSatish Balay   Mat            B = baij->B;
397ac7a638eSSatish Balay   Mat_SeqBAIJ    *b = (Mat_SeqBAIJ*)(B)->data;
398b24ad042SBarry Smith   PetscInt       *bimax=b->imax,*bi=b->i,*bilen=b->ilen,*bj=b->j;
3993eda8832SBarry Smith   MatScalar      *ba=b->a;
400ac7a638eSSatish Balay 
401b24ad042SBarry Smith   PetscInt       *rp,ii,nrow,_i,rmax,N,brow,bcol;
402b24ad042SBarry Smith   PetscInt       low,high,t,ridx,cidx,bs2=a->bs2;
4033eda8832SBarry Smith   MatScalar      *ap,*bap;
40480c1aa95SSatish Balay 
405d64ed03dSBarry Smith   PetscFunctionBegin;
40657b952d6SSatish Balay   for (i=0; i<m; i++) {
4075ef9f2a5SBarry Smith     if (im[i] < 0) continue;
4082515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
40977431f27SBarry Smith     if (im[i] >= mat->M) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],mat->M-1);
410639f9d9dSBarry Smith #endif
41157b952d6SSatish Balay     if (im[i] >= rstart_orig && im[i] < rend_orig) {
41257b952d6SSatish Balay       row = im[i] - rstart_orig;
41357b952d6SSatish Balay       for (j=0; j<n; j++) {
41457b952d6SSatish Balay         if (in[j] >= cstart_orig && in[j] < cend_orig){
41557b952d6SSatish Balay           col = in[j] - cstart_orig;
41657b952d6SSatish Balay           if (roworiented) value = v[i*n+j]; else value = v[i+j*m];
417f5e9677aSSatish Balay           MatSetValues_SeqBAIJ_A_Private(row,col,value,addv);
41880c1aa95SSatish Balay           /* ierr = MatSetValues_SeqBAIJ(baij->A,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */
41973959e64SBarry Smith         } else if (in[j] < 0) continue;
4202515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
42177431f27SBarry Smith         else if (in[j] >= mat->N) {SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",in[i],mat->N-1);}
422639f9d9dSBarry Smith #endif
42357b952d6SSatish Balay         else {
42457b952d6SSatish Balay           if (mat->was_assembled) {
425905e6a2fSBarry Smith             if (!baij->colmap) {
426905e6a2fSBarry Smith               ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
427905e6a2fSBarry Smith             }
428aa482453SBarry Smith #if defined (PETSC_USE_CTABLE)
4290f5bd95cSBarry Smith             ierr = PetscTableFind(baij->colmap,in[j]/bs + 1,&col);CHKERRQ(ierr);
430bba1ac68SSatish Balay             col  = col - 1;
43148e59246SSatish Balay #else
432bba1ac68SSatish Balay             col = baij->colmap[in[j]/bs] - 1;
43348e59246SSatish Balay #endif
43457b952d6SSatish Balay             if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) {
43557b952d6SSatish Balay               ierr = DisAssemble_MPIBAIJ(mat);CHKERRQ(ierr);
4368295de27SSatish Balay               col =  in[j];
4379bf004c3SSatish Balay               /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */
4389bf004c3SSatish Balay               B = baij->B;
4399bf004c3SSatish Balay               b = (Mat_SeqBAIJ*)(B)->data;
4409bf004c3SSatish Balay               bimax=b->imax;bi=b->i;bilen=b->ilen;bj=b->j;
4419bf004c3SSatish Balay               ba=b->a;
442bba1ac68SSatish Balay             } else col += in[j]%bs;
4438295de27SSatish Balay           } else col = in[j];
44457b952d6SSatish Balay           if (roworiented) value = v[i*n+j]; else value = v[i+j*m];
44590da58bdSSatish Balay           MatSetValues_SeqBAIJ_B_Private(row,col,value,addv);
44690da58bdSSatish Balay           /* ierr = MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */
44757b952d6SSatish Balay         }
44857b952d6SSatish Balay       }
449d64ed03dSBarry Smith     } else {
45090f02eecSBarry Smith       if (!baij->donotstash) {
451ff2fd236SBarry Smith         if (roworiented) {
4526fa18ffdSBarry Smith           ierr = MatStashValuesRow_Private(&mat->stash,im[i],n,in,v+i*n);CHKERRQ(ierr);
453ff2fd236SBarry Smith         } else {
4546fa18ffdSBarry Smith           ierr = MatStashValuesCol_Private(&mat->stash,im[i],n,in,v+i,m);CHKERRQ(ierr);
45557b952d6SSatish Balay         }
45657b952d6SSatish Balay       }
45757b952d6SSatish Balay     }
45890f02eecSBarry Smith   }
4593a40ed3dSBarry Smith   PetscFunctionReturn(0);
46057b952d6SSatish Balay }
46157b952d6SSatish Balay 
4624a2ae208SSatish Balay #undef __FUNCT__
4634a2ae208SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_MPIBAIJ_MatScalar"
464b24ad042SBarry Smith PetscErrorCode MatSetValuesBlocked_MPIBAIJ_MatScalar(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const MatScalar v[],InsertMode addv)
465ab26458aSBarry Smith {
466ab26458aSBarry Smith   Mat_MPIBAIJ     *baij = (Mat_MPIBAIJ*)mat->data;
467f15d580aSBarry Smith   const MatScalar *value;
468f15d580aSBarry Smith   MatScalar       *barray=baij->barray;
469273d9f13SBarry Smith   PetscTruth      roworiented = baij->roworiented;
470dfbe8321SBarry Smith   PetscErrorCode  ierr;
471b24ad042SBarry Smith   PetscInt        i,j,ii,jj,row,col,rstart=baij->rstart;
472b24ad042SBarry Smith   PetscInt        rend=baij->rend,cstart=baij->cstart,stepval;
473521d7252SBarry Smith   PetscInt        cend=baij->cend,bs=mat->bs,bs2=baij->bs2;
474ab26458aSBarry Smith 
475b16ae2b1SBarry Smith   PetscFunctionBegin;
47630793edcSSatish Balay   if(!barray) {
47782502324SSatish Balay     ierr         = PetscMalloc(bs2*sizeof(MatScalar),&barray);CHKERRQ(ierr);
47882502324SSatish Balay     baij->barray = barray;
47930793edcSSatish Balay   }
48030793edcSSatish Balay 
481ab26458aSBarry Smith   if (roworiented) {
482ab26458aSBarry Smith     stepval = (n-1)*bs;
483ab26458aSBarry Smith   } else {
484ab26458aSBarry Smith     stepval = (m-1)*bs;
485ab26458aSBarry Smith   }
486ab26458aSBarry Smith   for (i=0; i<m; i++) {
4875ef9f2a5SBarry Smith     if (im[i] < 0) continue;
4882515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
48977431f27SBarry Smith     if (im[i] >= baij->Mbs) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large, row %D max %D",im[i],baij->Mbs-1);
490ab26458aSBarry Smith #endif
491ab26458aSBarry Smith     if (im[i] >= rstart && im[i] < rend) {
492ab26458aSBarry Smith       row = im[i] - rstart;
493ab26458aSBarry Smith       for (j=0; j<n; j++) {
49415b57d14SSatish Balay         /* If NumCol = 1 then a copy is not required */
49515b57d14SSatish Balay         if ((roworiented) && (n == 1)) {
496f15d580aSBarry Smith           barray = (MatScalar*)v + i*bs2;
49715b57d14SSatish Balay         } else if((!roworiented) && (m == 1)) {
498f15d580aSBarry Smith           barray = (MatScalar*)v + j*bs2;
49915b57d14SSatish Balay         } else { /* Here a copy is required */
500ab26458aSBarry Smith           if (roworiented) {
501ab26458aSBarry Smith             value = v + i*(stepval+bs)*bs + j*bs;
502ab26458aSBarry Smith           } else {
503ab26458aSBarry Smith             value = v + j*(stepval+bs)*bs + i*bs;
504abef11f7SSatish Balay           }
50547513183SBarry Smith           for (ii=0; ii<bs; ii++,value+=stepval) {
50647513183SBarry Smith             for (jj=0; jj<bs; jj++) {
50730793edcSSatish Balay               *barray++  = *value++;
50847513183SBarry Smith             }
50947513183SBarry Smith           }
51030793edcSSatish Balay           barray -=bs2;
51115b57d14SSatish Balay         }
512abef11f7SSatish Balay 
513abef11f7SSatish Balay         if (in[j] >= cstart && in[j] < cend){
514abef11f7SSatish Balay           col  = in[j] - cstart;
51593fea6afSBarry Smith           ierr = MatSetValuesBlocked_SeqBAIJ_MatScalar(baij->A,1,&row,1,&col,barray,addv);CHKERRQ(ierr);
516ab26458aSBarry Smith         }
5175ef9f2a5SBarry Smith         else if (in[j] < 0) continue;
5182515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
51977431f27SBarry Smith         else if (in[j] >= baij->Nbs) {SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large, col %D max %D",in[j],baij->Nbs-1);}
520ab26458aSBarry Smith #endif
521ab26458aSBarry Smith         else {
522ab26458aSBarry Smith           if (mat->was_assembled) {
523ab26458aSBarry Smith             if (!baij->colmap) {
524ab26458aSBarry Smith               ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
525ab26458aSBarry Smith             }
526a5eb4965SSatish Balay 
5272515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
528aa482453SBarry Smith #if defined (PETSC_USE_CTABLE)
529b24ad042SBarry Smith             { PetscInt data;
5300f5bd95cSBarry Smith               ierr = PetscTableFind(baij->colmap,in[j]+1,&data);CHKERRQ(ierr);
53129bbc08cSBarry Smith               if ((data - 1) % bs) SETERRQ(PETSC_ERR_PLIB,"Incorrect colmap");
532fa46199cSSatish Balay             }
53348e59246SSatish Balay #else
53429bbc08cSBarry Smith             if ((baij->colmap[in[j]] - 1) % bs) SETERRQ(PETSC_ERR_PLIB,"Incorrect colmap");
535a5eb4965SSatish Balay #endif
53648e59246SSatish Balay #endif
537aa482453SBarry Smith #if defined (PETSC_USE_CTABLE)
5380f5bd95cSBarry Smith 	    ierr = PetscTableFind(baij->colmap,in[j]+1,&col);CHKERRQ(ierr);
539fa46199cSSatish Balay             col  = (col - 1)/bs;
54048e59246SSatish Balay #else
541a5eb4965SSatish Balay             col = (baij->colmap[in[j]] - 1)/bs;
54248e59246SSatish Balay #endif
543ab26458aSBarry Smith             if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) {
544ab26458aSBarry Smith               ierr = DisAssemble_MPIBAIJ(mat);CHKERRQ(ierr);
545ab26458aSBarry Smith               col =  in[j];
546ab26458aSBarry Smith             }
547ab26458aSBarry Smith           }
548ab26458aSBarry Smith           else col = in[j];
54993fea6afSBarry Smith           ierr = MatSetValuesBlocked_SeqBAIJ_MatScalar(baij->B,1,&row,1,&col,barray,addv);CHKERRQ(ierr);
550ab26458aSBarry Smith         }
551ab26458aSBarry Smith       }
552d64ed03dSBarry Smith     } else {
553ab26458aSBarry Smith       if (!baij->donotstash) {
554ff2fd236SBarry Smith         if (roworiented) {
5556fa18ffdSBarry Smith           ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
556ff2fd236SBarry Smith         } else {
5576fa18ffdSBarry Smith           ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
558ff2fd236SBarry Smith         }
559abef11f7SSatish Balay       }
560ab26458aSBarry Smith     }
561ab26458aSBarry Smith   }
5623a40ed3dSBarry Smith   PetscFunctionReturn(0);
563ab26458aSBarry Smith }
5646fa18ffdSBarry Smith 
5650bdbc534SSatish Balay #define HASH_KEY 0.6180339887
566b24ad042SBarry Smith #define HASH(size,key,tmp) (tmp = (key)*HASH_KEY,(PetscInt)((size)*(tmp-(PetscInt)tmp)))
567b24ad042SBarry Smith /* #define HASH(size,key) ((PetscInt)((size)*fmod(((key)*HASH_KEY),1))) */
568b24ad042SBarry Smith /* #define HASH(size,key,tmp) ((PetscInt)((size)*fmod(((key)*HASH_KEY),1))) */
5694a2ae208SSatish Balay #undef __FUNCT__
5704a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_MPIBAIJ_HT_MatScalar"
571b24ad042SBarry Smith PetscErrorCode MatSetValues_MPIBAIJ_HT_MatScalar(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const MatScalar v[],InsertMode addv)
5720bdbc534SSatish Balay {
5730bdbc534SSatish Balay   Mat_MPIBAIJ    *baij = (Mat_MPIBAIJ*)mat->data;
574273d9f13SBarry Smith   PetscTruth     roworiented = baij->roworiented;
575dfbe8321SBarry Smith   PetscErrorCode ierr;
576b24ad042SBarry Smith   PetscInt       i,j,row,col;
577b24ad042SBarry Smith   PetscInt       rstart_orig=baij->rstart_bs;
578b24ad042SBarry Smith   PetscInt       rend_orig=baij->rend_bs,Nbs=baij->Nbs;
579521d7252SBarry Smith   PetscInt       h1,key,size=baij->ht_size,bs=mat->bs,*HT=baij->ht,idx;
580329f5518SBarry Smith   PetscReal      tmp;
5813eda8832SBarry Smith   MatScalar      **HD = baij->hd,value;
5822515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
583b24ad042SBarry Smith   PetscInt       total_ct=baij->ht_total_ct,insert_ct=baij->ht_insert_ct;
5844a15367fSSatish Balay #endif
5850bdbc534SSatish Balay 
5860bdbc534SSatish Balay   PetscFunctionBegin;
5870bdbc534SSatish Balay 
5880bdbc534SSatish Balay   for (i=0; i<m; i++) {
5892515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
59029bbc08cSBarry Smith     if (im[i] < 0) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Negative row");
59177431f27SBarry Smith     if (im[i] >= mat->M) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],mat->M-1);
5920bdbc534SSatish Balay #endif
5930bdbc534SSatish Balay       row = im[i];
594c2760754SSatish Balay     if (row >= rstart_orig && row < rend_orig) {
5950bdbc534SSatish Balay       for (j=0; j<n; j++) {
5960bdbc534SSatish Balay         col = in[j];
5976fa18ffdSBarry Smith         if (roworiented) value = v[i*n+j]; else value = v[i+j*m];
598b24ad042SBarry Smith         /* Look up PetscInto the Hash Table */
599c2760754SSatish Balay         key = (row/bs)*Nbs+(col/bs)+1;
600c2760754SSatish Balay         h1  = HASH(size,key,tmp);
6010bdbc534SSatish Balay 
602c2760754SSatish Balay 
603c2760754SSatish Balay         idx = h1;
6042515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
605187ce0cbSSatish Balay         insert_ct++;
606187ce0cbSSatish Balay         total_ct++;
607187ce0cbSSatish Balay         if (HT[idx] != key) {
608187ce0cbSSatish Balay           for (idx=h1; (idx<size) && (HT[idx]!=key); idx++,total_ct++);
609187ce0cbSSatish Balay           if (idx == size) {
610187ce0cbSSatish Balay             for (idx=0; (idx<h1) && (HT[idx]!=key); idx++,total_ct++);
611187ce0cbSSatish Balay             if (idx == h1) {
61277431f27SBarry Smith               SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"(%D,%D) has no entry in the hash table", row, col);
613187ce0cbSSatish Balay             }
614187ce0cbSSatish Balay           }
615187ce0cbSSatish Balay         }
616187ce0cbSSatish Balay #else
617c2760754SSatish Balay         if (HT[idx] != key) {
618c2760754SSatish Balay           for (idx=h1; (idx<size) && (HT[idx]!=key); idx++);
619c2760754SSatish Balay           if (idx == size) {
620c2760754SSatish Balay             for (idx=0; (idx<h1) && (HT[idx]!=key); idx++);
621c2760754SSatish Balay             if (idx == h1) {
62277431f27SBarry Smith               SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"(%D,%D) has no entry in the hash table", row, col);
623c2760754SSatish Balay             }
624c2760754SSatish Balay           }
625c2760754SSatish Balay         }
626187ce0cbSSatish Balay #endif
627c2760754SSatish Balay         /* A HASH table entry is found, so insert the values at the correct address */
628c2760754SSatish Balay         if (addv == ADD_VALUES) *(HD[idx]+ (col % bs)*bs + (row % bs)) += value;
629c2760754SSatish Balay         else                    *(HD[idx]+ (col % bs)*bs + (row % bs))  = value;
6300bdbc534SSatish Balay       }
6310bdbc534SSatish Balay     } else {
6320bdbc534SSatish Balay       if (!baij->donotstash) {
633ff2fd236SBarry Smith         if (roworiented) {
6348798bf22SSatish Balay           ierr = MatStashValuesRow_Private(&mat->stash,im[i],n,in,v+i*n);CHKERRQ(ierr);
635ff2fd236SBarry Smith         } else {
6368798bf22SSatish Balay           ierr = MatStashValuesCol_Private(&mat->stash,im[i],n,in,v+i,m);CHKERRQ(ierr);
6370bdbc534SSatish Balay         }
6380bdbc534SSatish Balay       }
6390bdbc534SSatish Balay     }
6400bdbc534SSatish Balay   }
6412515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
642187ce0cbSSatish Balay   baij->ht_total_ct = total_ct;
643187ce0cbSSatish Balay   baij->ht_insert_ct = insert_ct;
644187ce0cbSSatish Balay #endif
6450bdbc534SSatish Balay   PetscFunctionReturn(0);
6460bdbc534SSatish Balay }
6470bdbc534SSatish Balay 
6484a2ae208SSatish Balay #undef __FUNCT__
6494a2ae208SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_MPIBAIJ_HT_MatScalar"
650b24ad042SBarry Smith PetscErrorCode MatSetValuesBlocked_MPIBAIJ_HT_MatScalar(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const MatScalar v[],InsertMode addv)
6510bdbc534SSatish Balay {
6520bdbc534SSatish Balay   Mat_MPIBAIJ     *baij = (Mat_MPIBAIJ*)mat->data;
653273d9f13SBarry Smith   PetscTruth      roworiented = baij->roworiented;
654dfbe8321SBarry Smith   PetscErrorCode  ierr;
655b24ad042SBarry Smith   PetscInt        i,j,ii,jj,row,col;
656b24ad042SBarry Smith   PetscInt        rstart=baij->rstart ;
657521d7252SBarry Smith   PetscInt        rend=baij->rend,stepval,bs=mat->bs,bs2=baij->bs2;
658b24ad042SBarry Smith   PetscInt        h1,key,size=baij->ht_size,idx,*HT=baij->ht,Nbs=baij->Nbs;
659329f5518SBarry Smith   PetscReal       tmp;
6603eda8832SBarry Smith   MatScalar       **HD = baij->hd,*baij_a;
661f15d580aSBarry Smith   const MatScalar *v_t,*value;
6622515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
663b24ad042SBarry Smith   PetscInt        total_ct=baij->ht_total_ct,insert_ct=baij->ht_insert_ct;
6644a15367fSSatish Balay #endif
6650bdbc534SSatish Balay 
666d0a41580SSatish Balay   PetscFunctionBegin;
667d0a41580SSatish Balay 
6680bdbc534SSatish Balay   if (roworiented) {
6690bdbc534SSatish Balay     stepval = (n-1)*bs;
6700bdbc534SSatish Balay   } else {
6710bdbc534SSatish Balay     stepval = (m-1)*bs;
6720bdbc534SSatish Balay   }
6730bdbc534SSatish Balay   for (i=0; i<m; i++) {
6742515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
67577431f27SBarry Smith     if (im[i] < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %D",im[i]);
67677431f27SBarry Smith     if (im[i] >= baij->Mbs) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],baij->Mbs-1);
6770bdbc534SSatish Balay #endif
6780bdbc534SSatish Balay     row   = im[i];
679187ce0cbSSatish Balay     v_t   = v + i*bs2;
680c2760754SSatish Balay     if (row >= rstart && row < rend) {
6810bdbc534SSatish Balay       for (j=0; j<n; j++) {
6820bdbc534SSatish Balay         col = in[j];
6830bdbc534SSatish Balay 
6840bdbc534SSatish Balay         /* Look up into the Hash Table */
685c2760754SSatish Balay         key = row*Nbs+col+1;
686c2760754SSatish Balay         h1  = HASH(size,key,tmp);
6870bdbc534SSatish Balay 
688c2760754SSatish Balay         idx = h1;
6892515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
690187ce0cbSSatish Balay         total_ct++;
691187ce0cbSSatish Balay         insert_ct++;
692187ce0cbSSatish Balay        if (HT[idx] != key) {
693187ce0cbSSatish Balay           for (idx=h1; (idx<size) && (HT[idx]!=key); idx++,total_ct++);
694187ce0cbSSatish Balay           if (idx == size) {
695187ce0cbSSatish Balay             for (idx=0; (idx<h1) && (HT[idx]!=key); idx++,total_ct++);
696187ce0cbSSatish Balay             if (idx == h1) {
69777431f27SBarry Smith               SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"(%D,%D) has no entry in the hash table", row, col);
698187ce0cbSSatish Balay             }
699187ce0cbSSatish Balay           }
700187ce0cbSSatish Balay         }
701187ce0cbSSatish Balay #else
702c2760754SSatish Balay         if (HT[idx] != key) {
703c2760754SSatish Balay           for (idx=h1; (idx<size) && (HT[idx]!=key); idx++);
704c2760754SSatish Balay           if (idx == size) {
705c2760754SSatish Balay             for (idx=0; (idx<h1) && (HT[idx]!=key); idx++);
706c2760754SSatish Balay             if (idx == h1) {
70777431f27SBarry Smith               SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"(%D,%D) has no entry in the hash table", row, col);
708c2760754SSatish Balay             }
709c2760754SSatish Balay           }
710c2760754SSatish Balay         }
711187ce0cbSSatish Balay #endif
712c2760754SSatish Balay         baij_a = HD[idx];
7130bdbc534SSatish Balay         if (roworiented) {
714c2760754SSatish Balay           /*value = v + i*(stepval+bs)*bs + j*bs;*/
715187ce0cbSSatish Balay           /* value = v + (i*(stepval+bs)+j)*bs; */
716187ce0cbSSatish Balay           value = v_t;
717187ce0cbSSatish Balay           v_t  += bs;
718fef45726SSatish Balay           if (addv == ADD_VALUES) {
719c2760754SSatish Balay             for (ii=0; ii<bs; ii++,value+=stepval) {
720c2760754SSatish Balay               for (jj=ii; jj<bs2; jj+=bs) {
721fef45726SSatish Balay                 baij_a[jj]  += *value++;
722b4cc0f5aSSatish Balay               }
723b4cc0f5aSSatish Balay             }
724fef45726SSatish Balay           } else {
725c2760754SSatish Balay             for (ii=0; ii<bs; ii++,value+=stepval) {
726c2760754SSatish Balay               for (jj=ii; jj<bs2; jj+=bs) {
727fef45726SSatish Balay                 baij_a[jj]  = *value++;
728fef45726SSatish Balay               }
729fef45726SSatish Balay             }
730fef45726SSatish Balay           }
7310bdbc534SSatish Balay         } else {
7320bdbc534SSatish Balay           value = v + j*(stepval+bs)*bs + i*bs;
733fef45726SSatish Balay           if (addv == ADD_VALUES) {
734b4cc0f5aSSatish Balay             for (ii=0; ii<bs; ii++,value+=stepval,baij_a+=bs) {
7350bdbc534SSatish Balay               for (jj=0; jj<bs; jj++) {
736fef45726SSatish Balay                 baij_a[jj]  += *value++;
737fef45726SSatish Balay               }
738fef45726SSatish Balay             }
739fef45726SSatish Balay           } else {
740fef45726SSatish Balay             for (ii=0; ii<bs; ii++,value+=stepval,baij_a+=bs) {
741fef45726SSatish Balay               for (jj=0; jj<bs; jj++) {
742fef45726SSatish Balay                 baij_a[jj]  = *value++;
743fef45726SSatish Balay               }
744b4cc0f5aSSatish Balay             }
7450bdbc534SSatish Balay           }
7460bdbc534SSatish Balay         }
7470bdbc534SSatish Balay       }
7480bdbc534SSatish Balay     } else {
7490bdbc534SSatish Balay       if (!baij->donotstash) {
7500bdbc534SSatish Balay         if (roworiented) {
7518798bf22SSatish Balay           ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
7520bdbc534SSatish Balay         } else {
7538798bf22SSatish Balay           ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
7540bdbc534SSatish Balay         }
7550bdbc534SSatish Balay       }
7560bdbc534SSatish Balay     }
7570bdbc534SSatish Balay   }
7582515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
759187ce0cbSSatish Balay   baij->ht_total_ct = total_ct;
760187ce0cbSSatish Balay   baij->ht_insert_ct = insert_ct;
761187ce0cbSSatish Balay #endif
7620bdbc534SSatish Balay   PetscFunctionReturn(0);
7630bdbc534SSatish Balay }
764133cdb44SSatish Balay 
7654a2ae208SSatish Balay #undef __FUNCT__
7664a2ae208SSatish Balay #define __FUNCT__ "MatGetValues_MPIBAIJ"
767b24ad042SBarry Smith PetscErrorCode MatGetValues_MPIBAIJ(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[])
768d6de1c52SSatish Balay {
769d6de1c52SSatish Balay   Mat_MPIBAIJ    *baij = (Mat_MPIBAIJ*)mat->data;
7706849ba73SBarry Smith   PetscErrorCode ierr;
771521d7252SBarry Smith   PetscInt       bs=mat->bs,i,j,bsrstart = baij->rstart*bs,bsrend = baij->rend*bs;
772b24ad042SBarry Smith   PetscInt       bscstart = baij->cstart*bs,bscend = baij->cend*bs,row,col,data;
773d6de1c52SSatish Balay 
774133cdb44SSatish Balay   PetscFunctionBegin;
775d6de1c52SSatish Balay   for (i=0; i<m; i++) {
77677431f27SBarry Smith     if (idxm[i] < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %D",idxm[i]);
77777431f27SBarry Smith     if (idxm[i] >= mat->M) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",idxm[i],mat->M-1);
778d6de1c52SSatish Balay     if (idxm[i] >= bsrstart && idxm[i] < bsrend) {
779d6de1c52SSatish Balay       row = idxm[i] - bsrstart;
780d6de1c52SSatish Balay       for (j=0; j<n; j++) {
78177431f27SBarry Smith         if (idxn[j] < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Negative column: %D",idxn[j]);
78277431f27SBarry Smith         if (idxn[j] >= mat->N) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",idxn[j],mat->N-1);
783d6de1c52SSatish Balay         if (idxn[j] >= bscstart && idxn[j] < bscend){
784d6de1c52SSatish Balay           col = idxn[j] - bscstart;
78598dd23e9SBarry Smith           ierr = MatGetValues_SeqBAIJ(baij->A,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr);
786d64ed03dSBarry Smith         } else {
787905e6a2fSBarry Smith           if (!baij->colmap) {
788905e6a2fSBarry Smith             ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
789905e6a2fSBarry Smith           }
790aa482453SBarry Smith #if defined (PETSC_USE_CTABLE)
7910f5bd95cSBarry Smith           ierr = PetscTableFind(baij->colmap,idxn[j]/bs+1,&data);CHKERRQ(ierr);
792fa46199cSSatish Balay           data --;
79348e59246SSatish Balay #else
79448e59246SSatish Balay           data = baij->colmap[idxn[j]/bs]-1;
79548e59246SSatish Balay #endif
79648e59246SSatish Balay           if((data < 0) || (baij->garray[data/bs] != idxn[j]/bs)) *(v+i*n+j) = 0.0;
797d9d09a02SSatish Balay           else {
79848e59246SSatish Balay             col  = data + idxn[j]%bs;
79998dd23e9SBarry Smith             ierr = MatGetValues_SeqBAIJ(baij->B,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr);
800d6de1c52SSatish Balay           }
801d6de1c52SSatish Balay         }
802d6de1c52SSatish Balay       }
803d64ed03dSBarry Smith     } else {
80429bbc08cSBarry Smith       SETERRQ(PETSC_ERR_SUP,"Only local values currently supported");
805d6de1c52SSatish Balay     }
806d6de1c52SSatish Balay   }
8073a40ed3dSBarry Smith  PetscFunctionReturn(0);
808d6de1c52SSatish Balay }
809d6de1c52SSatish Balay 
8104a2ae208SSatish Balay #undef __FUNCT__
8114a2ae208SSatish Balay #define __FUNCT__ "MatNorm_MPIBAIJ"
812dfbe8321SBarry Smith PetscErrorCode MatNorm_MPIBAIJ(Mat mat,NormType type,PetscReal *nrm)
813d6de1c52SSatish Balay {
814d6de1c52SSatish Balay   Mat_MPIBAIJ    *baij = (Mat_MPIBAIJ*)mat->data;
815d6de1c52SSatish Balay   Mat_SeqBAIJ    *amat = (Mat_SeqBAIJ*)baij->A->data,*bmat = (Mat_SeqBAIJ*)baij->B->data;
816dfbe8321SBarry Smith   PetscErrorCode ierr;
817*8a62d963SHong Zhang   PetscInt       i,j,bs2=baij->bs2,bs=baij->A->bs,nz,row,col;
818329f5518SBarry Smith   PetscReal      sum = 0.0;
8193eda8832SBarry Smith   MatScalar      *v;
820d6de1c52SSatish Balay 
821d64ed03dSBarry Smith   PetscFunctionBegin;
822d6de1c52SSatish Balay   if (baij->size == 1) {
823064f8208SBarry Smith     ierr =  MatNorm(baij->A,type,nrm);CHKERRQ(ierr);
824d6de1c52SSatish Balay   } else {
825d6de1c52SSatish Balay     if (type == NORM_FROBENIUS) {
826d6de1c52SSatish Balay       v = amat->a;
827*8a62d963SHong Zhang       nz = amat->nz*bs2;
828*8a62d963SHong Zhang       for (i=0; i<nz; i++) {
829aa482453SBarry Smith #if defined(PETSC_USE_COMPLEX)
830329f5518SBarry Smith         sum += PetscRealPart(PetscConj(*v)*(*v)); v++;
831d6de1c52SSatish Balay #else
832d6de1c52SSatish Balay         sum += (*v)*(*v); v++;
833d6de1c52SSatish Balay #endif
834d6de1c52SSatish Balay       }
835d6de1c52SSatish Balay       v = bmat->a;
836*8a62d963SHong Zhang       nz = bmat->nz*bs2;
837*8a62d963SHong Zhang       for (i=0; i<nz; i++) {
838aa482453SBarry Smith #if defined(PETSC_USE_COMPLEX)
839329f5518SBarry Smith         sum += PetscRealPart(PetscConj(*v)*(*v)); v++;
840d6de1c52SSatish Balay #else
841d6de1c52SSatish Balay         sum += (*v)*(*v); v++;
842d6de1c52SSatish Balay #endif
843d6de1c52SSatish Balay       }
844064f8208SBarry Smith       ierr = MPI_Allreduce(&sum,nrm,1,MPIU_REAL,MPI_SUM,mat->comm);CHKERRQ(ierr);
845064f8208SBarry Smith       *nrm = sqrt(*nrm);
846*8a62d963SHong Zhang     } else if (type == NORM_1) { /* max column sum */
847*8a62d963SHong Zhang       PetscReal *tmp,*tmp2;
848*8a62d963SHong Zhang       PetscInt  *jj,*garray=baij->garray,cstart=baij->cstart;
849*8a62d963SHong Zhang       ierr = PetscMalloc((2*mat->N+1)*sizeof(PetscReal),&tmp);CHKERRQ(ierr);
850*8a62d963SHong Zhang       tmp2 = tmp + mat->N;
851*8a62d963SHong Zhang       ierr = PetscMemzero(tmp,mat->N*sizeof(PetscReal));CHKERRQ(ierr);
852*8a62d963SHong Zhang       v = amat->a; jj = amat->j;
853*8a62d963SHong Zhang       for (i=0; i<amat->nz; i++) {
854*8a62d963SHong Zhang         for (j=0; j<bs; j++){
855*8a62d963SHong Zhang           col = bs*(cstart + *jj) + j; /* column index */
856*8a62d963SHong Zhang           for (row=0; row<bs; row++){
857*8a62d963SHong Zhang             tmp[col] += PetscAbsScalar(*v);  v++;
858*8a62d963SHong Zhang           }
859*8a62d963SHong Zhang         }
860*8a62d963SHong Zhang         jj++;
861*8a62d963SHong Zhang       }
862*8a62d963SHong Zhang       v = bmat->a; jj = bmat->j;
863*8a62d963SHong Zhang       for (i=0; i<bmat->nz; i++) {
864*8a62d963SHong Zhang         for (j=0; j<bs; j++){
865*8a62d963SHong Zhang           col = bs*garray[*jj] + j;
866*8a62d963SHong Zhang           for (row=0; row<bs; row++){
867*8a62d963SHong Zhang             tmp[col] += PetscAbsScalar(*v); v++;
868*8a62d963SHong Zhang           }
869*8a62d963SHong Zhang         }
870*8a62d963SHong Zhang         jj++;
871*8a62d963SHong Zhang       }
872*8a62d963SHong Zhang       ierr = MPI_Allreduce(tmp,tmp2,mat->N,MPIU_REAL,MPI_SUM,mat->comm);CHKERRQ(ierr);
873*8a62d963SHong Zhang       *nrm = 0.0;
874*8a62d963SHong Zhang       for (j=0; j<mat->N; j++) {
875*8a62d963SHong Zhang         if (tmp2[j] > *nrm) *nrm = tmp2[j];
876*8a62d963SHong Zhang       }
877*8a62d963SHong Zhang       ierr = PetscFree(tmp);CHKERRQ(ierr);
878*8a62d963SHong Zhang     } else if (type == NORM_INFINITY) { /* max row sum */
879*8a62d963SHong Zhang       PetscReal sums[bs];
880*8a62d963SHong Zhang       sum = 0.0;
881*8a62d963SHong Zhang       for (j=0; j<amat->mbs; j++) {
882*8a62d963SHong Zhang         for (row=0; row<bs; row++) sums[row] = 0.0;
883*8a62d963SHong Zhang         v = amat->a + bs2*amat->i[j];
884*8a62d963SHong Zhang         nz = amat->i[j+1]-amat->i[j];
885*8a62d963SHong Zhang         for (i=0; i<nz; i++) {
886*8a62d963SHong Zhang           for (col=0; col<bs; col++){
887*8a62d963SHong Zhang             for (row=0; row<bs; row++){
888*8a62d963SHong Zhang               sums[row] += PetscAbsScalar(*v); v++;
889*8a62d963SHong Zhang             }
890*8a62d963SHong Zhang           }
891*8a62d963SHong Zhang         }
892*8a62d963SHong Zhang         v = bmat->a + bs2*bmat->i[j];
893*8a62d963SHong Zhang         nz = bmat->i[j+1]-bmat->i[j];
894*8a62d963SHong Zhang         for (i=0; i<nz; i++) {
895*8a62d963SHong Zhang           for (col=0; col<bs; col++){
896*8a62d963SHong Zhang             for (row=0; row<bs; row++){
897*8a62d963SHong Zhang               sums[row] += PetscAbsScalar(*v); v++;
898*8a62d963SHong Zhang             }
899*8a62d963SHong Zhang           }
900*8a62d963SHong Zhang         }
901*8a62d963SHong Zhang         for (row=0; row<bs; row++){
902*8a62d963SHong Zhang           if (sums[row] > sum) sum = sums[row];
903*8a62d963SHong Zhang         }
904*8a62d963SHong Zhang       }
905*8a62d963SHong Zhang       ierr = MPI_Allreduce(&sum,nrm,1,MPIU_REAL,MPI_MAX,mat->comm);CHKERRQ(ierr);
906d64ed03dSBarry Smith     } else {
90729bbc08cSBarry Smith       SETERRQ(PETSC_ERR_SUP,"No support for this norm yet");
908d6de1c52SSatish Balay     }
909d64ed03dSBarry Smith   }
9103a40ed3dSBarry Smith   PetscFunctionReturn(0);
911d6de1c52SSatish Balay }
91257b952d6SSatish Balay 
913fef45726SSatish Balay /*
914fef45726SSatish Balay   Creates the hash table, and sets the table
915fef45726SSatish Balay   This table is created only once.
916fef45726SSatish Balay   If new entried need to be added to the matrix
917fef45726SSatish Balay   then the hash table has to be destroyed and
918fef45726SSatish Balay   recreated.
919fef45726SSatish Balay */
9204a2ae208SSatish Balay #undef __FUNCT__
9214a2ae208SSatish Balay #define __FUNCT__ "MatCreateHashTable_MPIBAIJ_Private"
922dfbe8321SBarry Smith PetscErrorCode MatCreateHashTable_MPIBAIJ_Private(Mat mat,PetscReal factor)
923596b8d2eSBarry Smith {
924596b8d2eSBarry Smith   Mat_MPIBAIJ    *baij = (Mat_MPIBAIJ*)mat->data;
925596b8d2eSBarry Smith   Mat            A = baij->A,B=baij->B;
926596b8d2eSBarry Smith   Mat_SeqBAIJ    *a=(Mat_SeqBAIJ *)A->data,*b=(Mat_SeqBAIJ *)B->data;
927b24ad042SBarry Smith   PetscInt       i,j,k,nz=a->nz+b->nz,h1,*ai=a->i,*aj=a->j,*bi=b->i,*bj=b->j;
9286849ba73SBarry Smith   PetscErrorCode ierr;
929b24ad042SBarry Smith   PetscInt       size,bs2=baij->bs2,rstart=baij->rstart;
930b24ad042SBarry Smith   PetscInt       cstart=baij->cstart,*garray=baij->garray,row,col,Nbs=baij->Nbs;
931b24ad042SBarry Smith   PetscInt       *HT,key;
9323eda8832SBarry Smith   MatScalar      **HD;
933329f5518SBarry Smith   PetscReal      tmp;
9342515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
935b24ad042SBarry Smith   PetscInt       ct=0,max=0;
9364a15367fSSatish Balay #endif
937fef45726SSatish Balay 
938d64ed03dSBarry Smith   PetscFunctionBegin;
939b24ad042SBarry Smith   baij->ht_size=(PetscInt)(factor*nz);
9400bdbc534SSatish Balay   size = baij->ht_size;
941fef45726SSatish Balay 
9420bdbc534SSatish Balay   if (baij->ht) {
9430bdbc534SSatish Balay     PetscFunctionReturn(0);
944596b8d2eSBarry Smith   }
9450bdbc534SSatish Balay 
946fef45726SSatish Balay   /* Allocate Memory for Hash Table */
947b24ad042SBarry Smith   ierr     = PetscMalloc((size)*(sizeof(PetscInt)+sizeof(MatScalar*))+1,&baij->hd);CHKERRQ(ierr);
948b24ad042SBarry Smith   baij->ht = (PetscInt*)(baij->hd + size);
949b9e4cc15SSatish Balay   HD       = baij->hd;
950a07cd24cSSatish Balay   HT       = baij->ht;
951b9e4cc15SSatish Balay 
952b9e4cc15SSatish Balay 
953b24ad042SBarry Smith   ierr = PetscMemzero(HD,size*(sizeof(PetscInt)+sizeof(PetscScalar*)));CHKERRQ(ierr);
9540bdbc534SSatish Balay 
955596b8d2eSBarry Smith 
956596b8d2eSBarry Smith   /* Loop Over A */
9570bdbc534SSatish Balay   for (i=0; i<a->mbs; i++) {
958596b8d2eSBarry Smith     for (j=ai[i]; j<ai[i+1]; j++) {
9590bdbc534SSatish Balay       row = i+rstart;
9600bdbc534SSatish Balay       col = aj[j]+cstart;
961596b8d2eSBarry Smith 
962187ce0cbSSatish Balay       key = row*Nbs + col + 1;
963c2760754SSatish Balay       h1  = HASH(size,key,tmp);
9640bdbc534SSatish Balay       for (k=0; k<size; k++){
965958c9bccSBarry Smith         if (!HT[(h1+k)%size]) {
9660bdbc534SSatish Balay           HT[(h1+k)%size] = key;
9670bdbc534SSatish Balay           HD[(h1+k)%size] = a->a + j*bs2;
968596b8d2eSBarry Smith           break;
9692515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
970187ce0cbSSatish Balay         } else {
971187ce0cbSSatish Balay           ct++;
972187ce0cbSSatish Balay #endif
973596b8d2eSBarry Smith         }
974187ce0cbSSatish Balay       }
9752515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
976187ce0cbSSatish Balay       if (k> max) max = k;
977187ce0cbSSatish Balay #endif
978596b8d2eSBarry Smith     }
979596b8d2eSBarry Smith   }
980596b8d2eSBarry Smith   /* Loop Over B */
9810bdbc534SSatish Balay   for (i=0; i<b->mbs; i++) {
982596b8d2eSBarry Smith     for (j=bi[i]; j<bi[i+1]; j++) {
9830bdbc534SSatish Balay       row = i+rstart;
9840bdbc534SSatish Balay       col = garray[bj[j]];
985187ce0cbSSatish Balay       key = row*Nbs + col + 1;
986c2760754SSatish Balay       h1  = HASH(size,key,tmp);
9870bdbc534SSatish Balay       for (k=0; k<size; k++){
988958c9bccSBarry Smith         if (!HT[(h1+k)%size]) {
9890bdbc534SSatish Balay           HT[(h1+k)%size] = key;
9900bdbc534SSatish Balay           HD[(h1+k)%size] = b->a + j*bs2;
991596b8d2eSBarry Smith           break;
9922515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
993187ce0cbSSatish Balay         } else {
994187ce0cbSSatish Balay           ct++;
995187ce0cbSSatish Balay #endif
996596b8d2eSBarry Smith         }
997187ce0cbSSatish Balay       }
9982515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
999187ce0cbSSatish Balay       if (k> max) max = k;
1000187ce0cbSSatish Balay #endif
1001596b8d2eSBarry Smith     }
1002596b8d2eSBarry Smith   }
1003596b8d2eSBarry Smith 
1004596b8d2eSBarry Smith   /* Print Summary */
10052515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
1006c38d4ed2SBarry Smith   for (i=0,j=0; i<size; i++) {
1007596b8d2eSBarry Smith     if (HT[i]) {j++;}
1008c38d4ed2SBarry Smith   }
100963ba0a88SBarry Smith   ierr = PetscLogInfo((0,"MatCreateHashTable_MPIBAIJ_Private: Average Search = %5.2f,max search = %D\n",(!j)? 0.0:((PetscReal)(ct+j))/j,max));CHKERRQ(ierr);
1010187ce0cbSSatish Balay #endif
10113a40ed3dSBarry Smith   PetscFunctionReturn(0);
1012596b8d2eSBarry Smith }
101357b952d6SSatish Balay 
10144a2ae208SSatish Balay #undef __FUNCT__
10154a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyBegin_MPIBAIJ"
1016dfbe8321SBarry Smith PetscErrorCode MatAssemblyBegin_MPIBAIJ(Mat mat,MatAssemblyType mode)
1017bbb85fb3SSatish Balay {
1018bbb85fb3SSatish Balay   Mat_MPIBAIJ    *baij = (Mat_MPIBAIJ*)mat->data;
1019dfbe8321SBarry Smith   PetscErrorCode ierr;
1020b24ad042SBarry Smith   PetscInt       nstash,reallocs;
1021bbb85fb3SSatish Balay   InsertMode     addv;
1022bbb85fb3SSatish Balay 
1023bbb85fb3SSatish Balay   PetscFunctionBegin;
1024bbb85fb3SSatish Balay   if (baij->donotstash) {
1025bbb85fb3SSatish Balay     PetscFunctionReturn(0);
1026bbb85fb3SSatish Balay   }
1027bbb85fb3SSatish Balay 
1028bbb85fb3SSatish Balay   /* make sure all processors are either in INSERTMODE or ADDMODE */
1029bbb85fb3SSatish Balay   ierr = MPI_Allreduce(&mat->insertmode,&addv,1,MPI_INT,MPI_BOR,mat->comm);CHKERRQ(ierr);
1030bbb85fb3SSatish Balay   if (addv == (ADD_VALUES|INSERT_VALUES)) {
103129bbc08cSBarry Smith     SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Some processors inserted others added");
1032bbb85fb3SSatish Balay   }
1033bbb85fb3SSatish Balay   mat->insertmode = addv; /* in case this processor had no cache */
1034bbb85fb3SSatish Balay 
10358798bf22SSatish Balay   ierr = MatStashScatterBegin_Private(&mat->stash,baij->rowners_bs);CHKERRQ(ierr);
10368798bf22SSatish Balay   ierr = MatStashScatterBegin_Private(&mat->bstash,baij->rowners);CHKERRQ(ierr);
10378798bf22SSatish Balay   ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr);
103863ba0a88SBarry Smith   ierr = PetscLogInfo((0,"MatAssemblyBegin_MPIBAIJ:Stash has %D entries,uses %D mallocs.\n",nstash,reallocs));CHKERRQ(ierr);
103946680499SSatish Balay   ierr = MatStashGetInfo_Private(&mat->bstash,&nstash,&reallocs);CHKERRQ(ierr);
104063ba0a88SBarry Smith   ierr = PetscLogInfo((0,"MatAssemblyBegin_MPIBAIJ:Block-Stash has %D entries, uses %D mallocs.\n",nstash,reallocs));CHKERRQ(ierr);
1041bbb85fb3SSatish Balay   PetscFunctionReturn(0);
1042bbb85fb3SSatish Balay }
1043bbb85fb3SSatish Balay 
10444a2ae208SSatish Balay #undef __FUNCT__
10454a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyEnd_MPIBAIJ"
1046dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_MPIBAIJ(Mat mat,MatAssemblyType mode)
1047bbb85fb3SSatish Balay {
1048bbb85fb3SSatish Balay   Mat_MPIBAIJ    *baij=(Mat_MPIBAIJ*)mat->data;
1049a2d1c673SSatish Balay   Mat_SeqBAIJ    *a=(Mat_SeqBAIJ*)baij->A->data,*b=(Mat_SeqBAIJ*)baij->B->data;
10506849ba73SBarry Smith   PetscErrorCode ierr;
1051b24ad042SBarry Smith   PetscInt       i,j,rstart,ncols,flg,bs2=baij->bs2;
1052b24ad042SBarry Smith   PetscInt       *row,*col,other_disassembled;
10537c922b88SBarry Smith   PetscTruth     r1,r2,r3;
10543eda8832SBarry Smith   MatScalar      *val;
1055bbb85fb3SSatish Balay   InsertMode     addv = mat->insertmode;
1056b24ad042SBarry Smith   PetscMPIInt    n;
1057bbb85fb3SSatish Balay 
1058bbb85fb3SSatish Balay   PetscFunctionBegin;
1059bbb85fb3SSatish Balay   if (!baij->donotstash) {
1060a2d1c673SSatish Balay     while (1) {
10618798bf22SSatish Balay       ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr);
1062a2d1c673SSatish Balay       if (!flg) break;
1063a2d1c673SSatish Balay 
1064bbb85fb3SSatish Balay       for (i=0; i<n;) {
1065bbb85fb3SSatish Balay         /* Now identify the consecutive vals belonging to the same row */
1066bbb85fb3SSatish Balay         for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; }
1067bbb85fb3SSatish Balay         if (j < n) ncols = j-i;
1068bbb85fb3SSatish Balay         else       ncols = n-i;
1069bbb85fb3SSatish Balay         /* Now assemble all these values with a single function call */
107093fea6afSBarry Smith         ierr = MatSetValues_MPIBAIJ_MatScalar(mat,1,row+i,ncols,col+i,val+i,addv);CHKERRQ(ierr);
1071bbb85fb3SSatish Balay         i = j;
1072bbb85fb3SSatish Balay       }
1073bbb85fb3SSatish Balay     }
10748798bf22SSatish Balay     ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr);
1075a2d1c673SSatish Balay     /* Now process the block-stash. Since the values are stashed column-oriented,
1076a2d1c673SSatish Balay        set the roworiented flag to column oriented, and after MatSetValues()
1077a2d1c673SSatish Balay        restore the original flags */
1078a2d1c673SSatish Balay     r1 = baij->roworiented;
1079a2d1c673SSatish Balay     r2 = a->roworiented;
1080a2d1c673SSatish Balay     r3 = b->roworiented;
10817c922b88SBarry Smith     baij->roworiented = PETSC_FALSE;
10827c922b88SBarry Smith     a->roworiented    = PETSC_FALSE;
10837c922b88SBarry Smith     b->roworiented    = PETSC_FALSE;
1084a2d1c673SSatish Balay     while (1) {
10858798bf22SSatish Balay       ierr = MatStashScatterGetMesg_Private(&mat->bstash,&n,&row,&col,&val,&flg);CHKERRQ(ierr);
1086a2d1c673SSatish Balay       if (!flg) break;
1087a2d1c673SSatish Balay 
1088a2d1c673SSatish Balay       for (i=0; i<n;) {
1089a2d1c673SSatish Balay         /* Now identify the consecutive vals belonging to the same row */
1090a2d1c673SSatish Balay         for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; }
1091a2d1c673SSatish Balay         if (j < n) ncols = j-i;
1092a2d1c673SSatish Balay         else       ncols = n-i;
109393fea6afSBarry Smith         ierr = MatSetValuesBlocked_MPIBAIJ_MatScalar(mat,1,row+i,ncols,col+i,val+i*bs2,addv);CHKERRQ(ierr);
1094a2d1c673SSatish Balay         i = j;
1095a2d1c673SSatish Balay       }
1096a2d1c673SSatish Balay     }
10978798bf22SSatish Balay     ierr = MatStashScatterEnd_Private(&mat->bstash);CHKERRQ(ierr);
1098a2d1c673SSatish Balay     baij->roworiented = r1;
1099a2d1c673SSatish Balay     a->roworiented    = r2;
1100a2d1c673SSatish Balay     b->roworiented    = r3;
1101bbb85fb3SSatish Balay   }
1102bbb85fb3SSatish Balay 
1103bbb85fb3SSatish Balay   ierr = MatAssemblyBegin(baij->A,mode);CHKERRQ(ierr);
1104bbb85fb3SSatish Balay   ierr = MatAssemblyEnd(baij->A,mode);CHKERRQ(ierr);
1105bbb85fb3SSatish Balay 
1106bbb85fb3SSatish Balay   /* determine if any processor has disassembled, if so we must
1107bbb85fb3SSatish Balay      also disassemble ourselfs, in order that we may reassemble. */
1108bbb85fb3SSatish Balay   /*
1109bbb85fb3SSatish Balay      if nonzero structure of submatrix B cannot change then we know that
1110bbb85fb3SSatish Balay      no processor disassembled thus we can skip this stuff
1111bbb85fb3SSatish Balay   */
1112bbb85fb3SSatish Balay   if (!((Mat_SeqBAIJ*)baij->B->data)->nonew)  {
1113bbb85fb3SSatish Balay     ierr = MPI_Allreduce(&mat->was_assembled,&other_disassembled,1,MPI_INT,MPI_PROD,mat->comm);CHKERRQ(ierr);
1114bbb85fb3SSatish Balay     if (mat->was_assembled && !other_disassembled) {
1115bbb85fb3SSatish Balay       ierr = DisAssemble_MPIBAIJ(mat);CHKERRQ(ierr);
1116bbb85fb3SSatish Balay     }
1117bbb85fb3SSatish Balay   }
1118bbb85fb3SSatish Balay 
1119bbb85fb3SSatish Balay   if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) {
1120bbb85fb3SSatish Balay     ierr = MatSetUpMultiply_MPIBAIJ(mat);CHKERRQ(ierr);
1121bbb85fb3SSatish Balay   }
112273e7a558SHong Zhang   b->compressedrow.use = PETSC_TRUE;
1123bbb85fb3SSatish Balay   ierr = MatAssemblyBegin(baij->B,mode);CHKERRQ(ierr);
1124bbb85fb3SSatish Balay   ierr = MatAssemblyEnd(baij->B,mode);CHKERRQ(ierr);
1125bbb85fb3SSatish Balay 
11262515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
1127bbb85fb3SSatish Balay   if (baij->ht && mode== MAT_FINAL_ASSEMBLY) {
112863ba0a88SBarry Smith     ierr = PetscLogInfo((0,"MatAssemblyEnd_MPIBAIJ:Average Hash Table Search in MatSetValues = %5.2f\n",((PetscReal)baij->ht_total_ct)/baij->ht_insert_ct));CHKERRQ(ierr);
1129bbb85fb3SSatish Balay     baij->ht_total_ct  = 0;
1130bbb85fb3SSatish Balay     baij->ht_insert_ct = 0;
1131bbb85fb3SSatish Balay   }
1132bbb85fb3SSatish Balay #endif
1133bbb85fb3SSatish Balay   if (baij->ht_flag && !baij->ht && mode == MAT_FINAL_ASSEMBLY) {
1134bbb85fb3SSatish Balay     ierr = MatCreateHashTable_MPIBAIJ_Private(mat,baij->ht_fact);CHKERRQ(ierr);
1135bbb85fb3SSatish Balay     mat->ops->setvalues        = MatSetValues_MPIBAIJ_HT;
1136bbb85fb3SSatish Balay     mat->ops->setvaluesblocked = MatSetValuesBlocked_MPIBAIJ_HT;
1137bbb85fb3SSatish Balay   }
1138bbb85fb3SSatish Balay 
1139606d414cSSatish Balay   if (baij->rowvalues) {
1140606d414cSSatish Balay     ierr = PetscFree(baij->rowvalues);CHKERRQ(ierr);
1141606d414cSSatish Balay     baij->rowvalues = 0;
1142606d414cSSatish Balay   }
1143bbb85fb3SSatish Balay   PetscFunctionReturn(0);
1144bbb85fb3SSatish Balay }
114557b952d6SSatish Balay 
11464a2ae208SSatish Balay #undef __FUNCT__
11474a2ae208SSatish Balay #define __FUNCT__ "MatView_MPIBAIJ_ASCIIorDraworSocket"
11486849ba73SBarry Smith static PetscErrorCode MatView_MPIBAIJ_ASCIIorDraworSocket(Mat mat,PetscViewer viewer)
114957b952d6SSatish Balay {
115057b952d6SSatish Balay   Mat_MPIBAIJ       *baij = (Mat_MPIBAIJ*)mat->data;
1151dfbe8321SBarry Smith   PetscErrorCode    ierr;
1152b24ad042SBarry Smith   PetscMPIInt       size = baij->size,rank = baij->rank;
1153521d7252SBarry Smith   PetscInt          bs = mat->bs;
115432077d6dSBarry Smith   PetscTruth        iascii,isdraw;
1155b0a32e0cSBarry Smith   PetscViewer       sviewer;
1156f3ef73ceSBarry Smith   PetscViewerFormat format;
115757b952d6SSatish Balay 
1158d64ed03dSBarry Smith   PetscFunctionBegin;
1159f81bd7ccSHong Zhang   /* printf(" MatView_MPIBAIJ_ASCIIorDraworSocket is called ...\n"); */
116032077d6dSBarry Smith   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&iascii);CHKERRQ(ierr);
1161fb9695e5SSatish Balay   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr);
116232077d6dSBarry Smith   if (iascii) {
1163b0a32e0cSBarry Smith     ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr);
1164456192e2SBarry Smith     if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) {
11654e220ebcSLois Curfman McInnes       MatInfo info;
1166d132466eSBarry Smith       ierr = MPI_Comm_rank(mat->comm,&rank);CHKERRQ(ierr);
1167d41123aaSBarry Smith       ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr);
116877431f27SBarry Smith       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Local rows %D nz %D nz alloced %D bs %D mem %D\n",
116977431f27SBarry Smith               rank,mat->m,(PetscInt)info.nz_used*bs,(PetscInt)info.nz_allocated*bs,
1170521d7252SBarry Smith               mat->bs,(PetscInt)info.memory);CHKERRQ(ierr);
1171d132466eSBarry Smith       ierr = MatGetInfo(baij->A,MAT_LOCAL,&info);CHKERRQ(ierr);
117277431f27SBarry Smith       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] on-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used*bs);CHKERRQ(ierr);
1173d132466eSBarry Smith       ierr = MatGetInfo(baij->B,MAT_LOCAL,&info);CHKERRQ(ierr);
117477431f27SBarry Smith       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] off-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used*bs);CHKERRQ(ierr);
1175b0a32e0cSBarry Smith       ierr = PetscViewerFlush(viewer);CHKERRQ(ierr);
117657b952d6SSatish Balay       ierr = VecScatterView(baij->Mvctx,viewer);CHKERRQ(ierr);
11773a40ed3dSBarry Smith       PetscFunctionReturn(0);
1178fb9695e5SSatish Balay     } else if (format == PETSC_VIEWER_ASCII_INFO) {
117977431f27SBarry Smith       ierr = PetscViewerASCIIPrintf(viewer,"  block size is %D\n",bs);CHKERRQ(ierr);
11803a40ed3dSBarry Smith       PetscFunctionReturn(0);
118104929863SHong Zhang     } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) {
118204929863SHong Zhang       PetscFunctionReturn(0);
118357b952d6SSatish Balay     }
118457b952d6SSatish Balay   }
118557b952d6SSatish Balay 
11860f5bd95cSBarry Smith   if (isdraw) {
1187b0a32e0cSBarry Smith     PetscDraw       draw;
118857b952d6SSatish Balay     PetscTruth isnull;
1189b0a32e0cSBarry Smith     ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr);
1190b0a32e0cSBarry Smith     ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); if (isnull) PetscFunctionReturn(0);
119157b952d6SSatish Balay   }
119257b952d6SSatish Balay 
119357b952d6SSatish Balay   if (size == 1) {
1194873048abSBarry Smith     ierr = PetscObjectSetName((PetscObject)baij->A,mat->name);CHKERRQ(ierr);
119557b952d6SSatish Balay     ierr = MatView(baij->A,viewer);CHKERRQ(ierr);
1196d64ed03dSBarry Smith   } else {
119757b952d6SSatish Balay     /* assemble the entire matrix onto first processor. */
119857b952d6SSatish Balay     Mat         A;
119957b952d6SSatish Balay     Mat_SeqBAIJ *Aloc;
1200b24ad042SBarry Smith     PetscInt    M = mat->M,N = mat->N,*ai,*aj,col,i,j,k,*rvals,mbs = baij->mbs;
12013eda8832SBarry Smith     MatScalar   *a;
120257b952d6SSatish Balay 
1203f204ca49SKris Buschelman     /* Here we are creating a temporary matrix, so will assume MPIBAIJ is acceptable */
1204f204ca49SKris Buschelman     /* Perhaps this should be the type of mat? */
120557b952d6SSatish Balay     if (!rank) {
1206f204ca49SKris Buschelman       ierr = MatCreate(mat->comm,M,N,M,N,&A);CHKERRQ(ierr);
1207d64ed03dSBarry Smith     } else {
1208f204ca49SKris Buschelman       ierr = MatCreate(mat->comm,0,0,M,N,&A);CHKERRQ(ierr);
120957b952d6SSatish Balay     }
1210f204ca49SKris Buschelman     ierr = MatSetType(A,MATMPIBAIJ);CHKERRQ(ierr);
1211521d7252SBarry Smith     ierr = MatMPIBAIJSetPreallocation(A,mat->bs,0,PETSC_NULL,0,PETSC_NULL);CHKERRQ(ierr);
121252e6d16bSBarry Smith     ierr = PetscLogObjectParent(mat,A);CHKERRQ(ierr);
121357b952d6SSatish Balay 
121457b952d6SSatish Balay     /* copy over the A part */
121557b952d6SSatish Balay     Aloc = (Mat_SeqBAIJ*)baij->A->data;
121657b952d6SSatish Balay     ai   = Aloc->i; aj = Aloc->j; a = Aloc->a;
1217b24ad042SBarry Smith     ierr = PetscMalloc(bs*sizeof(PetscInt),&rvals);CHKERRQ(ierr);
121857b952d6SSatish Balay 
121957b952d6SSatish Balay     for (i=0; i<mbs; i++) {
122057b952d6SSatish Balay       rvals[0] = bs*(baij->rstart + i);
122157b952d6SSatish Balay       for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; }
122257b952d6SSatish Balay       for (j=ai[i]; j<ai[i+1]; j++) {
122357b952d6SSatish Balay         col = (baij->cstart+aj[j])*bs;
122457b952d6SSatish Balay         for (k=0; k<bs; k++) {
122593fea6afSBarry Smith           ierr = MatSetValues_MPIBAIJ_MatScalar(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr);
1226cee3aa6bSSatish Balay           col++; a += bs;
122757b952d6SSatish Balay         }
122857b952d6SSatish Balay       }
122957b952d6SSatish Balay     }
123057b952d6SSatish Balay     /* copy over the B part */
123157b952d6SSatish Balay     Aloc = (Mat_SeqBAIJ*)baij->B->data;
123257b952d6SSatish Balay     ai = Aloc->i; aj = Aloc->j; a = Aloc->a;
123357b952d6SSatish Balay     for (i=0; i<mbs; i++) {
123457b952d6SSatish Balay       rvals[0] = bs*(baij->rstart + i);
123557b952d6SSatish Balay       for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; }
123657b952d6SSatish Balay       for (j=ai[i]; j<ai[i+1]; j++) {
123757b952d6SSatish Balay         col = baij->garray[aj[j]]*bs;
123857b952d6SSatish Balay         for (k=0; k<bs; k++) {
123993fea6afSBarry Smith           ierr = MatSetValues_MPIBAIJ_MatScalar(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr);
1240cee3aa6bSSatish Balay           col++; a += bs;
124157b952d6SSatish Balay         }
124257b952d6SSatish Balay       }
124357b952d6SSatish Balay     }
1244606d414cSSatish Balay     ierr = PetscFree(rvals);CHKERRQ(ierr);
12456d4a8577SBarry Smith     ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
12466d4a8577SBarry Smith     ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
124755843e3eSBarry Smith     /*
124855843e3eSBarry Smith        Everyone has to call to draw the matrix since the graphics waits are
1249b0a32e0cSBarry Smith        synchronized across all processors that share the PetscDraw object
125055843e3eSBarry Smith     */
1251b0a32e0cSBarry Smith     ierr = PetscViewerGetSingleton(viewer,&sviewer);CHKERRQ(ierr);
1252f14a1c24SBarry Smith     if (!rank) {
1253e36acaf3SBarry Smith       ierr = PetscObjectSetName((PetscObject)((Mat_MPIBAIJ*)(A->data))->A,mat->name);CHKERRQ(ierr);
12546831982aSBarry Smith       ierr = MatView(((Mat_MPIBAIJ*)(A->data))->A,sviewer);CHKERRQ(ierr);
125557b952d6SSatish Balay     }
1256b0a32e0cSBarry Smith     ierr = PetscViewerRestoreSingleton(viewer,&sviewer);CHKERRQ(ierr);
125757b952d6SSatish Balay     ierr = MatDestroy(A);CHKERRQ(ierr);
125857b952d6SSatish Balay   }
12593a40ed3dSBarry Smith   PetscFunctionReturn(0);
126057b952d6SSatish Balay }
126157b952d6SSatish Balay 
12624a2ae208SSatish Balay #undef __FUNCT__
12634a2ae208SSatish Balay #define __FUNCT__ "MatView_MPIBAIJ"
1264dfbe8321SBarry Smith PetscErrorCode MatView_MPIBAIJ(Mat mat,PetscViewer viewer)
126557b952d6SSatish Balay {
1266dfbe8321SBarry Smith   PetscErrorCode ierr;
126732077d6dSBarry Smith   PetscTruth     iascii,isdraw,issocket,isbinary;
126857b952d6SSatish Balay 
1269d64ed03dSBarry Smith   PetscFunctionBegin;
127032077d6dSBarry Smith   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&iascii);CHKERRQ(ierr);
1271fb9695e5SSatish Balay   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr);
1272b0a32e0cSBarry Smith   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_SOCKET,&issocket);CHKERRQ(ierr);
1273fb9695e5SSatish Balay   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_BINARY,&isbinary);CHKERRQ(ierr);
127432077d6dSBarry Smith   if (iascii || isdraw || issocket || isbinary) {
12757b2a1423SBarry Smith     ierr = MatView_MPIBAIJ_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr);
12765cd90555SBarry Smith   } else {
127779a5c55eSBarry Smith     SETERRQ1(PETSC_ERR_SUP,"Viewer type %s not supported by MPIBAIJ matrices",((PetscObject)viewer)->type_name);
127857b952d6SSatish Balay   }
12793a40ed3dSBarry Smith   PetscFunctionReturn(0);
128057b952d6SSatish Balay }
128157b952d6SSatish Balay 
12824a2ae208SSatish Balay #undef __FUNCT__
12834a2ae208SSatish Balay #define __FUNCT__ "MatDestroy_MPIBAIJ"
1284dfbe8321SBarry Smith PetscErrorCode MatDestroy_MPIBAIJ(Mat mat)
128579bdfe76SSatish Balay {
128679bdfe76SSatish Balay   Mat_MPIBAIJ    *baij = (Mat_MPIBAIJ*)mat->data;
1287dfbe8321SBarry Smith   PetscErrorCode ierr;
128879bdfe76SSatish Balay 
1289d64ed03dSBarry Smith   PetscFunctionBegin;
1290aa482453SBarry Smith #if defined(PETSC_USE_LOG)
129177431f27SBarry Smith   PetscLogObjectState((PetscObject)mat,"Rows=%D,Cols=%D",mat->M,mat->N);
129279bdfe76SSatish Balay #endif
12938798bf22SSatish Balay   ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr);
12948798bf22SSatish Balay   ierr = MatStashDestroy_Private(&mat->bstash);CHKERRQ(ierr);
1295606d414cSSatish Balay   ierr = PetscFree(baij->rowners);CHKERRQ(ierr);
129679bdfe76SSatish Balay   ierr = MatDestroy(baij->A);CHKERRQ(ierr);
129779bdfe76SSatish Balay   ierr = MatDestroy(baij->B);CHKERRQ(ierr);
1298aa482453SBarry Smith #if defined (PETSC_USE_CTABLE)
12990f5bd95cSBarry Smith   if (baij->colmap) {ierr = PetscTableDelete(baij->colmap);CHKERRQ(ierr);}
130048e59246SSatish Balay #else
1301606d414cSSatish Balay   if (baij->colmap) {ierr = PetscFree(baij->colmap);CHKERRQ(ierr);}
130248e59246SSatish Balay #endif
1303606d414cSSatish Balay   if (baij->garray) {ierr = PetscFree(baij->garray);CHKERRQ(ierr);}
1304606d414cSSatish Balay   if (baij->lvec)   {ierr = VecDestroy(baij->lvec);CHKERRQ(ierr);}
1305606d414cSSatish Balay   if (baij->Mvctx)  {ierr = VecScatterDestroy(baij->Mvctx);CHKERRQ(ierr);}
1306606d414cSSatish Balay   if (baij->rowvalues) {ierr = PetscFree(baij->rowvalues);CHKERRQ(ierr);}
1307606d414cSSatish Balay   if (baij->barray) {ierr = PetscFree(baij->barray);CHKERRQ(ierr);}
1308606d414cSSatish Balay   if (baij->hd) {ierr = PetscFree(baij->hd);CHKERRQ(ierr);}
13096fa18ffdSBarry Smith #if defined(PETSC_USE_MAT_SINGLE)
13106fa18ffdSBarry Smith   if (baij->setvaluescopy) {ierr = PetscFree(baij->setvaluescopy);CHKERRQ(ierr);}
13116fa18ffdSBarry Smith #endif
1312606d414cSSatish Balay   ierr = PetscFree(baij);CHKERRQ(ierr);
1313901853e0SKris Buschelman 
1314901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatStoreValues_C","",PETSC_NULL);CHKERRQ(ierr);
1315901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatRetrieveValues_C","",PETSC_NULL);CHKERRQ(ierr);
1316901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatGetDiagonalBlock_C","",PETSC_NULL);CHKERRQ(ierr);
1317901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPIBAIJSetPreallocation_C","",PETSC_NULL);CHKERRQ(ierr);
1318aac34f13SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPIBAIJSetPreallocationCSR_C","",PETSC_NULL);CHKERRQ(ierr);
1319901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDiagonalScaleLocal_C","",PETSC_NULL);CHKERRQ(ierr);
1320901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatSetHashTableFactor_C","",PETSC_NULL);CHKERRQ(ierr);
13213a40ed3dSBarry Smith   PetscFunctionReturn(0);
132279bdfe76SSatish Balay }
132379bdfe76SSatish Balay 
13244a2ae208SSatish Balay #undef __FUNCT__
13254a2ae208SSatish Balay #define __FUNCT__ "MatMult_MPIBAIJ"
1326dfbe8321SBarry Smith PetscErrorCode MatMult_MPIBAIJ(Mat A,Vec xx,Vec yy)
1327cee3aa6bSSatish Balay {
1328cee3aa6bSSatish Balay   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)A->data;
1329dfbe8321SBarry Smith   PetscErrorCode ierr;
1330b24ad042SBarry Smith   PetscInt       nt;
1331cee3aa6bSSatish Balay 
1332d64ed03dSBarry Smith   PetscFunctionBegin;
1333e1311b90SBarry Smith   ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr);
1334273d9f13SBarry Smith   if (nt != A->n) {
133529bbc08cSBarry Smith     SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx");
133647b4a8eaSLois Curfman McInnes   }
1337e1311b90SBarry Smith   ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr);
1338273d9f13SBarry Smith   if (nt != A->m) {
133929bbc08cSBarry Smith     SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible parition of A and yy");
134047b4a8eaSLois Curfman McInnes   }
134143a90d84SBarry Smith   ierr = VecScatterBegin(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr);
1342f830108cSBarry Smith   ierr = (*a->A->ops->mult)(a->A,xx,yy);CHKERRQ(ierr);
134343a90d84SBarry Smith   ierr = VecScatterEnd(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr);
1344f830108cSBarry Smith   ierr = (*a->B->ops->multadd)(a->B,a->lvec,yy,yy);CHKERRQ(ierr);
134543a90d84SBarry Smith   ierr = VecScatterPostRecvs(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr);
13463a40ed3dSBarry Smith   PetscFunctionReturn(0);
1347cee3aa6bSSatish Balay }
1348cee3aa6bSSatish Balay 
13494a2ae208SSatish Balay #undef __FUNCT__
13504a2ae208SSatish Balay #define __FUNCT__ "MatMultAdd_MPIBAIJ"
1351dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPIBAIJ(Mat A,Vec xx,Vec yy,Vec zz)
1352cee3aa6bSSatish Balay {
1353cee3aa6bSSatish Balay   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)A->data;
1354dfbe8321SBarry Smith   PetscErrorCode ierr;
1355d64ed03dSBarry Smith 
1356d64ed03dSBarry Smith   PetscFunctionBegin;
135743a90d84SBarry Smith   ierr = VecScatterBegin(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr);
1358f830108cSBarry Smith   ierr = (*a->A->ops->multadd)(a->A,xx,yy,zz);CHKERRQ(ierr);
135943a90d84SBarry Smith   ierr = VecScatterEnd(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr);
1360f830108cSBarry Smith   ierr = (*a->B->ops->multadd)(a->B,a->lvec,zz,zz);CHKERRQ(ierr);
13613a40ed3dSBarry Smith   PetscFunctionReturn(0);
1362cee3aa6bSSatish Balay }
1363cee3aa6bSSatish Balay 
13644a2ae208SSatish Balay #undef __FUNCT__
13654a2ae208SSatish Balay #define __FUNCT__ "MatMultTranspose_MPIBAIJ"
1366dfbe8321SBarry Smith PetscErrorCode MatMultTranspose_MPIBAIJ(Mat A,Vec xx,Vec yy)
1367cee3aa6bSSatish Balay {
1368cee3aa6bSSatish Balay   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)A->data;
1369dfbe8321SBarry Smith   PetscErrorCode ierr;
1370a5ff213dSBarry Smith   PetscTruth     merged;
1371cee3aa6bSSatish Balay 
1372d64ed03dSBarry Smith   PetscFunctionBegin;
1373a5ff213dSBarry Smith   ierr = VecScatterGetMerged(a->Mvctx,&merged);CHKERRQ(ierr);
1374cee3aa6bSSatish Balay   /* do nondiagonal part */
13757c922b88SBarry Smith   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr);
1376a5ff213dSBarry Smith   if (!merged) {
1377cee3aa6bSSatish Balay     /* send it on its way */
1378537820f0SBarry Smith     ierr = VecScatterBegin(a->lvec,yy,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr);
1379cee3aa6bSSatish Balay     /* do local part */
13807c922b88SBarry Smith     ierr = (*a->A->ops->multtranspose)(a->A,xx,yy);CHKERRQ(ierr);
1381cee3aa6bSSatish Balay     /* receive remote parts: note this assumes the values are not actually */
1382a5ff213dSBarry Smith     /* inserted in yy until the next line */
1383639f9d9dSBarry Smith     ierr = VecScatterEnd(a->lvec,yy,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr);
1384a5ff213dSBarry Smith   } else {
1385a5ff213dSBarry Smith     /* do local part */
1386a5ff213dSBarry Smith     ierr = (*a->A->ops->multtranspose)(a->A,xx,yy);CHKERRQ(ierr);
1387a5ff213dSBarry Smith     /* send it on its way */
1388a5ff213dSBarry Smith     ierr = VecScatterBegin(a->lvec,yy,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr);
1389a5ff213dSBarry Smith     /* values actually were received in the Begin() but we need to call this nop */
1390a5ff213dSBarry Smith     ierr = VecScatterEnd(a->lvec,yy,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr);
1391a5ff213dSBarry Smith   }
13923a40ed3dSBarry Smith   PetscFunctionReturn(0);
1393cee3aa6bSSatish Balay }
1394cee3aa6bSSatish Balay 
13954a2ae208SSatish Balay #undef __FUNCT__
13964a2ae208SSatish Balay #define __FUNCT__ "MatMultTransposeAdd_MPIBAIJ"
1397dfbe8321SBarry Smith PetscErrorCode MatMultTransposeAdd_MPIBAIJ(Mat A,Vec xx,Vec yy,Vec zz)
1398cee3aa6bSSatish Balay {
1399cee3aa6bSSatish Balay   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)A->data;
1400dfbe8321SBarry Smith   PetscErrorCode ierr;
1401cee3aa6bSSatish Balay 
1402d64ed03dSBarry Smith   PetscFunctionBegin;
1403cee3aa6bSSatish Balay   /* do nondiagonal part */
14047c922b88SBarry Smith   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr);
1405cee3aa6bSSatish Balay   /* send it on its way */
1406537820f0SBarry Smith   ierr = VecScatterBegin(a->lvec,zz,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr);
1407cee3aa6bSSatish Balay   /* do local part */
14087c922b88SBarry Smith   ierr = (*a->A->ops->multtransposeadd)(a->A,xx,yy,zz);CHKERRQ(ierr);
1409cee3aa6bSSatish Balay   /* receive remote parts: note this assumes the values are not actually */
1410cee3aa6bSSatish Balay   /* inserted in yy until the next line, which is true for my implementation*/
1411cee3aa6bSSatish Balay   /* but is not perhaps always true. */
1412537820f0SBarry Smith   ierr = VecScatterEnd(a->lvec,zz,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr);
14133a40ed3dSBarry Smith   PetscFunctionReturn(0);
1414cee3aa6bSSatish Balay }
1415cee3aa6bSSatish Balay 
1416cee3aa6bSSatish Balay /*
1417cee3aa6bSSatish Balay   This only works correctly for square matrices where the subblock A->A is the
1418cee3aa6bSSatish Balay    diagonal block
1419cee3aa6bSSatish Balay */
14204a2ae208SSatish Balay #undef __FUNCT__
14214a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonal_MPIBAIJ"
1422dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_MPIBAIJ(Mat A,Vec v)
1423cee3aa6bSSatish Balay {
1424cee3aa6bSSatish Balay   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)A->data;
1425dfbe8321SBarry Smith   PetscErrorCode ierr;
1426d64ed03dSBarry Smith 
1427d64ed03dSBarry Smith   PetscFunctionBegin;
1428273d9f13SBarry Smith   if (A->M != A->N) SETERRQ(PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block");
14293a40ed3dSBarry Smith   ierr = MatGetDiagonal(a->A,v);CHKERRQ(ierr);
14303a40ed3dSBarry Smith   PetscFunctionReturn(0);
1431cee3aa6bSSatish Balay }
1432cee3aa6bSSatish Balay 
14334a2ae208SSatish Balay #undef __FUNCT__
14344a2ae208SSatish Balay #define __FUNCT__ "MatScale_MPIBAIJ"
1435dfbe8321SBarry Smith PetscErrorCode MatScale_MPIBAIJ(const PetscScalar *aa,Mat A)
1436cee3aa6bSSatish Balay {
1437cee3aa6bSSatish Balay   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)A->data;
1438dfbe8321SBarry Smith   PetscErrorCode ierr;
1439d64ed03dSBarry Smith 
1440d64ed03dSBarry Smith   PetscFunctionBegin;
1441cee3aa6bSSatish Balay   ierr = MatScale(aa,a->A);CHKERRQ(ierr);
1442cee3aa6bSSatish Balay   ierr = MatScale(aa,a->B);CHKERRQ(ierr);
14433a40ed3dSBarry Smith   PetscFunctionReturn(0);
1444cee3aa6bSSatish Balay }
1445026e39d0SSatish Balay 
14464a2ae208SSatish Balay #undef __FUNCT__
14474a2ae208SSatish Balay #define __FUNCT__ "MatGetRow_MPIBAIJ"
1448b24ad042SBarry Smith PetscErrorCode MatGetRow_MPIBAIJ(Mat matin,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v)
1449acdf5bf4SSatish Balay {
1450acdf5bf4SSatish Balay   Mat_MPIBAIJ    *mat = (Mat_MPIBAIJ*)matin->data;
145187828ca2SBarry Smith   PetscScalar    *vworkA,*vworkB,**pvA,**pvB,*v_p;
14526849ba73SBarry Smith   PetscErrorCode ierr;
1453521d7252SBarry Smith   PetscInt       bs = matin->bs,bs2 = mat->bs2,i,*cworkA,*cworkB,**pcA,**pcB;
1454b24ad042SBarry Smith   PetscInt       nztot,nzA,nzB,lrow,brstart = mat->rstart*bs,brend = mat->rend*bs;
1455b24ad042SBarry Smith   PetscInt       *cmap,*idx_p,cstart = mat->cstart;
1456acdf5bf4SSatish Balay 
1457d64ed03dSBarry Smith   PetscFunctionBegin;
1458abc0a331SBarry Smith   if (mat->getrowactive) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Already active");
1459acdf5bf4SSatish Balay   mat->getrowactive = PETSC_TRUE;
1460acdf5bf4SSatish Balay 
1461acdf5bf4SSatish Balay   if (!mat->rowvalues && (idx || v)) {
1462acdf5bf4SSatish Balay     /*
1463acdf5bf4SSatish Balay         allocate enough space to hold information from the longest row.
1464acdf5bf4SSatish Balay     */
1465acdf5bf4SSatish Balay     Mat_SeqBAIJ *Aa = (Mat_SeqBAIJ*)mat->A->data,*Ba = (Mat_SeqBAIJ*)mat->B->data;
1466b24ad042SBarry Smith     PetscInt     max = 1,mbs = mat->mbs,tmp;
1467bd16c2feSSatish Balay     for (i=0; i<mbs; i++) {
1468acdf5bf4SSatish Balay       tmp = Aa->i[i+1] - Aa->i[i] + Ba->i[i+1] - Ba->i[i];
1469acdf5bf4SSatish Balay       if (max < tmp) { max = tmp; }
1470acdf5bf4SSatish Balay     }
1471b24ad042SBarry Smith     ierr = PetscMalloc(max*bs2*(sizeof(PetscInt)+sizeof(PetscScalar)),&mat->rowvalues);CHKERRQ(ierr);
1472b24ad042SBarry Smith     mat->rowindices = (PetscInt*)(mat->rowvalues + max*bs2);
1473acdf5bf4SSatish Balay   }
1474acdf5bf4SSatish Balay 
147529bbc08cSBarry Smith   if (row < brstart || row >= brend) SETERRQ(PETSC_ERR_SUP,"Only local rows")
1476d9d09a02SSatish Balay   lrow = row - brstart;
1477acdf5bf4SSatish Balay 
1478acdf5bf4SSatish Balay   pvA = &vworkA; pcA = &cworkA; pvB = &vworkB; pcB = &cworkB;
1479acdf5bf4SSatish Balay   if (!v)   {pvA = 0; pvB = 0;}
1480acdf5bf4SSatish Balay   if (!idx) {pcA = 0; if (!v) pcB = 0;}
1481f830108cSBarry Smith   ierr = (*mat->A->ops->getrow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr);
1482f830108cSBarry Smith   ierr = (*mat->B->ops->getrow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr);
1483acdf5bf4SSatish Balay   nztot = nzA + nzB;
1484acdf5bf4SSatish Balay 
1485acdf5bf4SSatish Balay   cmap  = mat->garray;
1486acdf5bf4SSatish Balay   if (v  || idx) {
1487acdf5bf4SSatish Balay     if (nztot) {
1488acdf5bf4SSatish Balay       /* Sort by increasing column numbers, assuming A and B already sorted */
1489b24ad042SBarry Smith       PetscInt imark = -1;
1490acdf5bf4SSatish Balay       if (v) {
1491acdf5bf4SSatish Balay         *v = v_p = mat->rowvalues;
1492acdf5bf4SSatish Balay         for (i=0; i<nzB; i++) {
1493d9d09a02SSatish Balay           if (cmap[cworkB[i]/bs] < cstart)   v_p[i] = vworkB[i];
1494acdf5bf4SSatish Balay           else break;
1495acdf5bf4SSatish Balay         }
1496acdf5bf4SSatish Balay         imark = i;
1497acdf5bf4SSatish Balay         for (i=0; i<nzA; i++)     v_p[imark+i] = vworkA[i];
1498acdf5bf4SSatish Balay         for (i=imark; i<nzB; i++) v_p[nzA+i]   = vworkB[i];
1499acdf5bf4SSatish Balay       }
1500acdf5bf4SSatish Balay       if (idx) {
1501acdf5bf4SSatish Balay         *idx = idx_p = mat->rowindices;
1502acdf5bf4SSatish Balay         if (imark > -1) {
1503acdf5bf4SSatish Balay           for (i=0; i<imark; i++) {
1504bd16c2feSSatish Balay             idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs;
1505acdf5bf4SSatish Balay           }
1506acdf5bf4SSatish Balay         } else {
1507acdf5bf4SSatish Balay           for (i=0; i<nzB; i++) {
1508d9d09a02SSatish Balay             if (cmap[cworkB[i]/bs] < cstart)
1509d9d09a02SSatish Balay               idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ;
1510acdf5bf4SSatish Balay             else break;
1511acdf5bf4SSatish Balay           }
1512acdf5bf4SSatish Balay           imark = i;
1513acdf5bf4SSatish Balay         }
1514d9d09a02SSatish Balay         for (i=0; i<nzA; i++)     idx_p[imark+i] = cstart*bs + cworkA[i];
1515d9d09a02SSatish Balay         for (i=imark; i<nzB; i++) idx_p[nzA+i]   = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ;
1516acdf5bf4SSatish Balay       }
1517d64ed03dSBarry Smith     } else {
1518d212a18eSSatish Balay       if (idx) *idx = 0;
1519d212a18eSSatish Balay       if (v)   *v   = 0;
1520d212a18eSSatish Balay     }
1521acdf5bf4SSatish Balay   }
1522acdf5bf4SSatish Balay   *nz = nztot;
1523f830108cSBarry Smith   ierr = (*mat->A->ops->restorerow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr);
1524f830108cSBarry Smith   ierr = (*mat->B->ops->restorerow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr);
15253a40ed3dSBarry Smith   PetscFunctionReturn(0);
1526acdf5bf4SSatish Balay }
1527acdf5bf4SSatish Balay 
15284a2ae208SSatish Balay #undef __FUNCT__
15294a2ae208SSatish Balay #define __FUNCT__ "MatRestoreRow_MPIBAIJ"
1530b24ad042SBarry Smith PetscErrorCode MatRestoreRow_MPIBAIJ(Mat mat,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v)
1531acdf5bf4SSatish Balay {
1532acdf5bf4SSatish Balay   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data;
1533d64ed03dSBarry Smith 
1534d64ed03dSBarry Smith   PetscFunctionBegin;
1535abc0a331SBarry Smith   if (!baij->getrowactive) {
153629bbc08cSBarry Smith     SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"MatGetRow not called");
1537acdf5bf4SSatish Balay   }
1538acdf5bf4SSatish Balay   baij->getrowactive = PETSC_FALSE;
15393a40ed3dSBarry Smith   PetscFunctionReturn(0);
1540acdf5bf4SSatish Balay }
1541acdf5bf4SSatish Balay 
15424a2ae208SSatish Balay #undef __FUNCT__
15434a2ae208SSatish Balay #define __FUNCT__ "MatZeroEntries_MPIBAIJ"
1544dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_MPIBAIJ(Mat A)
154558667388SSatish Balay {
154658667388SSatish Balay   Mat_MPIBAIJ    *l = (Mat_MPIBAIJ*)A->data;
1547dfbe8321SBarry Smith   PetscErrorCode ierr;
1548d64ed03dSBarry Smith 
1549d64ed03dSBarry Smith   PetscFunctionBegin;
155058667388SSatish Balay   ierr = MatZeroEntries(l->A);CHKERRQ(ierr);
155158667388SSatish Balay   ierr = MatZeroEntries(l->B);CHKERRQ(ierr);
15523a40ed3dSBarry Smith   PetscFunctionReturn(0);
155358667388SSatish Balay }
15540ac07820SSatish Balay 
15554a2ae208SSatish Balay #undef __FUNCT__
15564a2ae208SSatish Balay #define __FUNCT__ "MatGetInfo_MPIBAIJ"
1557dfbe8321SBarry Smith PetscErrorCode MatGetInfo_MPIBAIJ(Mat matin,MatInfoType flag,MatInfo *info)
15580ac07820SSatish Balay {
15594e220ebcSLois Curfman McInnes   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)matin->data;
15604e220ebcSLois Curfman McInnes   Mat            A = a->A,B = a->B;
1561dfbe8321SBarry Smith   PetscErrorCode ierr;
1562329f5518SBarry Smith   PetscReal      isend[5],irecv[5];
15630ac07820SSatish Balay 
1564d64ed03dSBarry Smith   PetscFunctionBegin;
1565521d7252SBarry Smith   info->block_size     = (PetscReal)matin->bs;
15664e220ebcSLois Curfman McInnes   ierr = MatGetInfo(A,MAT_LOCAL,info);CHKERRQ(ierr);
15670e4b21beSBarry Smith   isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded;
1568de87f314SBarry Smith   isend[3] = info->memory;  isend[4] = info->mallocs;
15694e220ebcSLois Curfman McInnes   ierr = MatGetInfo(B,MAT_LOCAL,info);CHKERRQ(ierr);
15700e4b21beSBarry Smith   isend[0] += info->nz_used; isend[1] += info->nz_allocated; isend[2] += info->nz_unneeded;
1571de87f314SBarry Smith   isend[3] += info->memory;  isend[4] += info->mallocs;
15720ac07820SSatish Balay   if (flag == MAT_LOCAL) {
15734e220ebcSLois Curfman McInnes     info->nz_used      = isend[0];
15744e220ebcSLois Curfman McInnes     info->nz_allocated = isend[1];
15754e220ebcSLois Curfman McInnes     info->nz_unneeded  = isend[2];
15764e220ebcSLois Curfman McInnes     info->memory       = isend[3];
15774e220ebcSLois Curfman McInnes     info->mallocs      = isend[4];
15780ac07820SSatish Balay   } else if (flag == MAT_GLOBAL_MAX) {
1579d7d1e502SBarry Smith     ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_MAX,matin->comm);CHKERRQ(ierr);
15804e220ebcSLois Curfman McInnes     info->nz_used      = irecv[0];
15814e220ebcSLois Curfman McInnes     info->nz_allocated = irecv[1];
15824e220ebcSLois Curfman McInnes     info->nz_unneeded  = irecv[2];
15834e220ebcSLois Curfman McInnes     info->memory       = irecv[3];
15844e220ebcSLois Curfman McInnes     info->mallocs      = irecv[4];
15850ac07820SSatish Balay   } else if (flag == MAT_GLOBAL_SUM) {
1586d7d1e502SBarry Smith     ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_SUM,matin->comm);CHKERRQ(ierr);
15874e220ebcSLois Curfman McInnes     info->nz_used      = irecv[0];
15884e220ebcSLois Curfman McInnes     info->nz_allocated = irecv[1];
15894e220ebcSLois Curfman McInnes     info->nz_unneeded  = irecv[2];
15904e220ebcSLois Curfman McInnes     info->memory       = irecv[3];
15914e220ebcSLois Curfman McInnes     info->mallocs      = irecv[4];
1592d41123aaSBarry Smith   } else {
159377431f27SBarry Smith     SETERRQ1(PETSC_ERR_ARG_WRONG,"Unknown MatInfoType argument %d",(int)flag);
15940ac07820SSatish Balay   }
1595f6275e2eSBarry Smith   info->rows_global       = (PetscReal)A->M;
1596f6275e2eSBarry Smith   info->columns_global    = (PetscReal)A->N;
1597f6275e2eSBarry Smith   info->rows_local        = (PetscReal)A->m;
1598f6275e2eSBarry Smith   info->columns_local     = (PetscReal)A->N;
15994e220ebcSLois Curfman McInnes   info->fill_ratio_given  = 0; /* no parallel LU/ILU/Cholesky */
16004e220ebcSLois Curfman McInnes   info->fill_ratio_needed = 0;
16014e220ebcSLois Curfman McInnes   info->factor_mallocs    = 0;
16023a40ed3dSBarry Smith   PetscFunctionReturn(0);
16030ac07820SSatish Balay }
16040ac07820SSatish Balay 
16054a2ae208SSatish Balay #undef __FUNCT__
16064a2ae208SSatish Balay #define __FUNCT__ "MatSetOption_MPIBAIJ"
1607dfbe8321SBarry Smith PetscErrorCode MatSetOption_MPIBAIJ(Mat A,MatOption op)
160858667388SSatish Balay {
160958667388SSatish Balay   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)A->data;
1610dfbe8321SBarry Smith   PetscErrorCode ierr;
161158667388SSatish Balay 
1612d64ed03dSBarry Smith   PetscFunctionBegin;
161312c028f9SKris Buschelman   switch (op) {
161412c028f9SKris Buschelman   case MAT_NO_NEW_NONZERO_LOCATIONS:
161512c028f9SKris Buschelman   case MAT_YES_NEW_NONZERO_LOCATIONS:
161612c028f9SKris Buschelman   case MAT_COLUMNS_UNSORTED:
161712c028f9SKris Buschelman   case MAT_COLUMNS_SORTED:
161812c028f9SKris Buschelman   case MAT_NEW_NONZERO_ALLOCATION_ERR:
161912c028f9SKris Buschelman   case MAT_KEEP_ZEROED_ROWS:
162012c028f9SKris Buschelman   case MAT_NEW_NONZERO_LOCATION_ERR:
162198305bb5SBarry Smith     ierr = MatSetOption(a->A,op);CHKERRQ(ierr);
162298305bb5SBarry Smith     ierr = MatSetOption(a->B,op);CHKERRQ(ierr);
162312c028f9SKris Buschelman     break;
162412c028f9SKris Buschelman   case MAT_ROW_ORIENTED:
16257c922b88SBarry Smith     a->roworiented = PETSC_TRUE;
162698305bb5SBarry Smith     ierr = MatSetOption(a->A,op);CHKERRQ(ierr);
162798305bb5SBarry Smith     ierr = MatSetOption(a->B,op);CHKERRQ(ierr);
162812c028f9SKris Buschelman     break;
162912c028f9SKris Buschelman   case MAT_ROWS_SORTED:
163012c028f9SKris Buschelman   case MAT_ROWS_UNSORTED:
163112c028f9SKris Buschelman   case MAT_YES_NEW_DIAGONALS:
163263ba0a88SBarry Smith     ierr = PetscLogInfo((A,"Info:MatSetOption_MPIBAIJ:Option ignored\n"));CHKERRQ(ierr);
163312c028f9SKris Buschelman     break;
163412c028f9SKris Buschelman   case MAT_COLUMN_ORIENTED:
16357c922b88SBarry Smith     a->roworiented = PETSC_FALSE;
163698305bb5SBarry Smith     ierr = MatSetOption(a->A,op);CHKERRQ(ierr);
163798305bb5SBarry Smith     ierr = MatSetOption(a->B,op);CHKERRQ(ierr);
163812c028f9SKris Buschelman     break;
163912c028f9SKris Buschelman   case MAT_IGNORE_OFF_PROC_ENTRIES:
16407c922b88SBarry Smith     a->donotstash = PETSC_TRUE;
164112c028f9SKris Buschelman     break;
164212c028f9SKris Buschelman   case MAT_NO_NEW_DIAGONALS:
164329bbc08cSBarry Smith     SETERRQ(PETSC_ERR_SUP,"MAT_NO_NEW_DIAGONALS");
164412c028f9SKris Buschelman   case MAT_USE_HASH_TABLE:
16457c922b88SBarry Smith     a->ht_flag = PETSC_TRUE;
164612c028f9SKris Buschelman     break;
164777e54ba9SKris Buschelman   case MAT_SYMMETRIC:
164877e54ba9SKris Buschelman   case MAT_STRUCTURALLY_SYMMETRIC:
16492188ac68SBarry Smith   case MAT_HERMITIAN:
16502188ac68SBarry Smith   case MAT_SYMMETRY_ETERNAL:
16512188ac68SBarry Smith     ierr = MatSetOption(a->A,op);CHKERRQ(ierr);
16522188ac68SBarry Smith     break;
16539a4540c5SBarry Smith   case MAT_NOT_SYMMETRIC:
16549a4540c5SBarry Smith   case MAT_NOT_STRUCTURALLY_SYMMETRIC:
16559a4540c5SBarry Smith   case MAT_NOT_HERMITIAN:
16569a4540c5SBarry Smith   case MAT_NOT_SYMMETRY_ETERNAL:
165777e54ba9SKris Buschelman     break;
165812c028f9SKris Buschelman   default:
165929bbc08cSBarry Smith     SETERRQ(PETSC_ERR_SUP,"unknown option");
1660d64ed03dSBarry Smith   }
16613a40ed3dSBarry Smith   PetscFunctionReturn(0);
166258667388SSatish Balay }
166358667388SSatish Balay 
16644a2ae208SSatish Balay #undef __FUNCT__
16654a2ae208SSatish Balay #define __FUNCT__ "MatTranspose_MPIBAIJ("
1666dfbe8321SBarry Smith PetscErrorCode MatTranspose_MPIBAIJ(Mat A,Mat *matout)
16670ac07820SSatish Balay {
16680ac07820SSatish Balay   Mat_MPIBAIJ    *baij = (Mat_MPIBAIJ*)A->data;
16690ac07820SSatish Balay   Mat_SeqBAIJ    *Aloc;
16700ac07820SSatish Balay   Mat            B;
1671dfbe8321SBarry Smith   PetscErrorCode ierr;
1672b24ad042SBarry Smith   PetscInt       M=A->M,N=A->N,*ai,*aj,i,*rvals,j,k,col;
1673521d7252SBarry Smith   PetscInt       bs=A->bs,mbs=baij->mbs;
16743eda8832SBarry Smith   MatScalar      *a;
16750ac07820SSatish Balay 
1676d64ed03dSBarry Smith   PetscFunctionBegin;
167729bbc08cSBarry Smith   if (!matout && M != N) SETERRQ(PETSC_ERR_ARG_SIZ,"Square matrix only for in-place");
1678f204ca49SKris Buschelman   ierr = MatCreate(A->comm,A->n,A->m,N,M,&B);CHKERRQ(ierr);
1679f204ca49SKris Buschelman   ierr = MatSetType(B,A->type_name);CHKERRQ(ierr);
1680521d7252SBarry Smith   ierr = MatMPIBAIJSetPreallocation(B,A->bs,0,PETSC_NULL,0,PETSC_NULL);CHKERRQ(ierr);
16810ac07820SSatish Balay 
16820ac07820SSatish Balay   /* copy over the A part */
16830ac07820SSatish Balay   Aloc = (Mat_SeqBAIJ*)baij->A->data;
16840ac07820SSatish Balay   ai   = Aloc->i; aj = Aloc->j; a = Aloc->a;
1685b24ad042SBarry Smith   ierr = PetscMalloc(bs*sizeof(PetscInt),&rvals);CHKERRQ(ierr);
16860ac07820SSatish Balay 
16870ac07820SSatish Balay   for (i=0; i<mbs; i++) {
16880ac07820SSatish Balay     rvals[0] = bs*(baij->rstart + i);
16890ac07820SSatish Balay     for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; }
16900ac07820SSatish Balay     for (j=ai[i]; j<ai[i+1]; j++) {
16910ac07820SSatish Balay       col = (baij->cstart+aj[j])*bs;
16920ac07820SSatish Balay       for (k=0; k<bs; k++) {
169393fea6afSBarry Smith         ierr = MatSetValues_MPIBAIJ_MatScalar(B,1,&col,bs,rvals,a,INSERT_VALUES);CHKERRQ(ierr);
16940ac07820SSatish Balay         col++; a += bs;
16950ac07820SSatish Balay       }
16960ac07820SSatish Balay     }
16970ac07820SSatish Balay   }
16980ac07820SSatish Balay   /* copy over the B part */
16990ac07820SSatish Balay   Aloc = (Mat_SeqBAIJ*)baij->B->data;
17000ac07820SSatish Balay   ai = Aloc->i; aj = Aloc->j; a = Aloc->a;
17010ac07820SSatish Balay   for (i=0; i<mbs; i++) {
17020ac07820SSatish Balay     rvals[0] = bs*(baij->rstart + i);
17030ac07820SSatish Balay     for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; }
17040ac07820SSatish Balay     for (j=ai[i]; j<ai[i+1]; j++) {
17050ac07820SSatish Balay       col = baij->garray[aj[j]]*bs;
17060ac07820SSatish Balay       for (k=0; k<bs; k++) {
170793fea6afSBarry Smith         ierr = MatSetValues_MPIBAIJ_MatScalar(B,1,&col,bs,rvals,a,INSERT_VALUES);CHKERRQ(ierr);
17080ac07820SSatish Balay         col++; a += bs;
17090ac07820SSatish Balay       }
17100ac07820SSatish Balay     }
17110ac07820SSatish Balay   }
1712606d414cSSatish Balay   ierr = PetscFree(rvals);CHKERRQ(ierr);
17130ac07820SSatish Balay   ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
17140ac07820SSatish Balay   ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
17150ac07820SSatish Balay 
17167c922b88SBarry Smith   if (matout) {
17170ac07820SSatish Balay     *matout = B;
17180ac07820SSatish Balay   } else {
1719273d9f13SBarry Smith     ierr = MatHeaderCopy(A,B);CHKERRQ(ierr);
17200ac07820SSatish Balay   }
17213a40ed3dSBarry Smith   PetscFunctionReturn(0);
17220ac07820SSatish Balay }
17230e95ebc0SSatish Balay 
17244a2ae208SSatish Balay #undef __FUNCT__
17254a2ae208SSatish Balay #define __FUNCT__ "MatDiagonalScale_MPIBAIJ"
1726dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_MPIBAIJ(Mat mat,Vec ll,Vec rr)
17270e95ebc0SSatish Balay {
172836c4a09eSSatish Balay   Mat_MPIBAIJ    *baij = (Mat_MPIBAIJ*)mat->data;
172936c4a09eSSatish Balay   Mat            a = baij->A,b = baij->B;
1730dfbe8321SBarry Smith   PetscErrorCode ierr;
1731b24ad042SBarry Smith   PetscInt       s1,s2,s3;
17320e95ebc0SSatish Balay 
1733d64ed03dSBarry Smith   PetscFunctionBegin;
173436c4a09eSSatish Balay   ierr = MatGetLocalSize(mat,&s2,&s3);CHKERRQ(ierr);
173536c4a09eSSatish Balay   if (rr) {
173636c4a09eSSatish Balay     ierr = VecGetLocalSize(rr,&s1);CHKERRQ(ierr);
173729bbc08cSBarry Smith     if (s1!=s3) SETERRQ(PETSC_ERR_ARG_SIZ,"right vector non-conforming local size");
173836c4a09eSSatish Balay     /* Overlap communication with computation. */
173936c4a09eSSatish Balay     ierr = VecScatterBegin(rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD,baij->Mvctx);CHKERRQ(ierr);
174036c4a09eSSatish Balay   }
17410e95ebc0SSatish Balay   if (ll) {
17420e95ebc0SSatish Balay     ierr = VecGetLocalSize(ll,&s1);CHKERRQ(ierr);
174329bbc08cSBarry Smith     if (s1!=s2) SETERRQ(PETSC_ERR_ARG_SIZ,"left vector non-conforming local size");
1744a21fb8cbSBarry Smith     ierr = (*b->ops->diagonalscale)(b,ll,PETSC_NULL);CHKERRQ(ierr);
17450e95ebc0SSatish Balay   }
174636c4a09eSSatish Balay   /* scale  the diagonal block */
174736c4a09eSSatish Balay   ierr = (*a->ops->diagonalscale)(a,ll,rr);CHKERRQ(ierr);
174836c4a09eSSatish Balay 
174936c4a09eSSatish Balay   if (rr) {
175036c4a09eSSatish Balay     /* Do a scatter end and then right scale the off-diagonal block */
175136c4a09eSSatish Balay     ierr = VecScatterEnd(rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD,baij->Mvctx);CHKERRQ(ierr);
1752a21fb8cbSBarry Smith     ierr = (*b->ops->diagonalscale)(b,PETSC_NULL,baij->lvec);CHKERRQ(ierr);
175336c4a09eSSatish Balay   }
175436c4a09eSSatish Balay 
17553a40ed3dSBarry Smith   PetscFunctionReturn(0);
17560e95ebc0SSatish Balay }
17570e95ebc0SSatish Balay 
17584a2ae208SSatish Balay #undef __FUNCT__
17594a2ae208SSatish Balay #define __FUNCT__ "MatZeroRows_MPIBAIJ"
1760dfbe8321SBarry Smith PetscErrorCode MatZeroRows_MPIBAIJ(Mat A,IS is,const PetscScalar *diag)
17610ac07820SSatish Balay {
17620ac07820SSatish Balay   Mat_MPIBAIJ    *l = (Mat_MPIBAIJ*)A->data;
17636849ba73SBarry Smith   PetscErrorCode ierr;
1764b24ad042SBarry Smith   PetscMPIInt    imdex,size = l->size,n,rank = l->rank;
1765b24ad042SBarry Smith   PetscInt       i,N,*rows,*owners = l->rowners;
1766b24ad042SBarry Smith   PetscInt       *nprocs,j,idx,nsends,row;
1767b24ad042SBarry Smith   PetscInt       nmax,*svalues,*starts,*owner,nrecvs;
17686543fbbaSBarry Smith   PetscInt       *rvalues,tag = A->tag,count,base,slen,*source,lastidx = -1;
1769521d7252SBarry Smith   PetscInt       *lens,*lrows,*values,bs=A->bs,rstart_bs=l->rstart_bs;
17700ac07820SSatish Balay   MPI_Comm       comm = A->comm;
17710ac07820SSatish Balay   MPI_Request    *send_waits,*recv_waits;
17720ac07820SSatish Balay   MPI_Status     recv_status,*send_status;
17730ac07820SSatish Balay   IS             istmp;
17746543fbbaSBarry Smith #if defined(PETSC_DEBUG)
17756543fbbaSBarry Smith   PetscTruth     found = PETSC_FALSE;
17766543fbbaSBarry Smith #endif
17770ac07820SSatish Balay 
1778d64ed03dSBarry Smith   PetscFunctionBegin;
1779f14a1c24SBarry Smith   ierr = ISGetLocalSize(is,&N);CHKERRQ(ierr);
17800ac07820SSatish Balay   ierr = ISGetIndices(is,&rows);CHKERRQ(ierr);
17810ac07820SSatish Balay 
17820ac07820SSatish Balay   /*  first count number of contributors to each processor */
1783b24ad042SBarry Smith   ierr  = PetscMalloc(2*size*sizeof(PetscInt),&nprocs);CHKERRQ(ierr);
1784b24ad042SBarry Smith   ierr  = PetscMemzero(nprocs,2*size*sizeof(PetscInt));CHKERRQ(ierr);
1785b24ad042SBarry Smith   ierr  = PetscMalloc((N+1)*sizeof(PetscInt),&owner);CHKERRQ(ierr); /* see note*/
17866543fbbaSBarry Smith   j = 0;
17870ac07820SSatish Balay   for (i=0; i<N; i++) {
17886543fbbaSBarry Smith     if (lastidx > (idx = rows[i])) j = 0;
17896543fbbaSBarry Smith     lastidx = idx;
17906543fbbaSBarry Smith     for (; j<size; j++) {
17910ac07820SSatish Balay       if (idx >= owners[j]*bs && idx < owners[j+1]*bs) {
17926543fbbaSBarry Smith         nprocs[2*j]++;
17936543fbbaSBarry Smith         nprocs[2*j+1] = 1;
17946543fbbaSBarry Smith         owner[i] = j;
17956543fbbaSBarry Smith #if defined(PETSC_DEBUG)
17966543fbbaSBarry Smith         found = PETSC_TRUE;
17976543fbbaSBarry Smith #endif
17986543fbbaSBarry Smith         break;
17990ac07820SSatish Balay       }
18000ac07820SSatish Balay     }
18016543fbbaSBarry Smith #if defined(PETSC_DEBUG)
180229bbc08cSBarry Smith     if (!found) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Index out of range");
18036543fbbaSBarry Smith     found = PETSC_FALSE;
18046543fbbaSBarry Smith #endif
18050ac07820SSatish Balay   }
1806c1dc657dSBarry Smith   nsends = 0;  for (i=0; i<size; i++) { nsends += nprocs[2*i+1];}
18070ac07820SSatish Balay 
18080ac07820SSatish Balay   /* inform other processors of number of messages and max length*/
1809c1dc657dSBarry Smith   ierr = PetscMaxSum(comm,nprocs,&nmax,&nrecvs);CHKERRQ(ierr);
18100ac07820SSatish Balay 
18110ac07820SSatish Balay   /* post receives:   */
1812b24ad042SBarry Smith   ierr = PetscMalloc((nrecvs+1)*(nmax+1)*sizeof(PetscInt),&rvalues);CHKERRQ(ierr);
1813b0a32e0cSBarry Smith   ierr = PetscMalloc((nrecvs+1)*sizeof(MPI_Request),&recv_waits);CHKERRQ(ierr);
18140ac07820SSatish Balay   for (i=0; i<nrecvs; i++) {
1815b24ad042SBarry Smith     ierr = MPI_Irecv(rvalues+nmax*i,nmax,MPIU_INT,MPI_ANY_SOURCE,tag,comm,recv_waits+i);CHKERRQ(ierr);
18160ac07820SSatish Balay   }
18170ac07820SSatish Balay 
18180ac07820SSatish Balay   /* do sends:
18190ac07820SSatish Balay      1) starts[i] gives the starting index in svalues for stuff going to
18200ac07820SSatish Balay      the ith processor
18210ac07820SSatish Balay   */
1822b24ad042SBarry Smith   ierr = PetscMalloc((N+1)*sizeof(PetscInt),&svalues);CHKERRQ(ierr);
1823b0a32e0cSBarry Smith   ierr = PetscMalloc((nsends+1)*sizeof(MPI_Request),&send_waits);CHKERRQ(ierr);
1824b24ad042SBarry Smith   ierr = PetscMalloc((size+1)*sizeof(PetscInt),&starts);CHKERRQ(ierr);
18250ac07820SSatish Balay   starts[0]  = 0;
1826c1dc657dSBarry Smith   for (i=1; i<size; i++) { starts[i] = starts[i-1] + nprocs[2*i-2];}
18270ac07820SSatish Balay   for (i=0; i<N; i++) {
18280ac07820SSatish Balay     svalues[starts[owner[i]]++] = rows[i];
18290ac07820SSatish Balay   }
18306831982aSBarry Smith   ierr = ISRestoreIndices(is,&rows);CHKERRQ(ierr);
18310ac07820SSatish Balay 
18320ac07820SSatish Balay   starts[0] = 0;
1833c1dc657dSBarry Smith   for (i=1; i<size+1; i++) { starts[i] = starts[i-1] + nprocs[2*i-2];}
18340ac07820SSatish Balay   count = 0;
18350ac07820SSatish Balay   for (i=0; i<size; i++) {
1836c1dc657dSBarry Smith     if (nprocs[2*i+1]) {
1837b24ad042SBarry Smith       ierr = MPI_Isend(svalues+starts[i],nprocs[2*i],MPIU_INT,i,tag,comm,send_waits+count++);CHKERRQ(ierr);
18380ac07820SSatish Balay     }
18390ac07820SSatish Balay   }
1840606d414cSSatish Balay   ierr = PetscFree(starts);CHKERRQ(ierr);
18410ac07820SSatish Balay 
18420ac07820SSatish Balay   base = owners[rank]*bs;
18430ac07820SSatish Balay 
18440ac07820SSatish Balay   /*  wait on receives */
1845b24ad042SBarry Smith   ierr   = PetscMalloc(2*(nrecvs+1)*sizeof(PetscInt),&lens);CHKERRQ(ierr);
18460ac07820SSatish Balay   source = lens + nrecvs;
18470ac07820SSatish Balay   count  = nrecvs; slen = 0;
18480ac07820SSatish Balay   while (count) {
1849ca161407SBarry Smith     ierr = MPI_Waitany(nrecvs,recv_waits,&imdex,&recv_status);CHKERRQ(ierr);
18500ac07820SSatish Balay     /* unpack receives into our local space */
1851b24ad042SBarry Smith     ierr = MPI_Get_count(&recv_status,MPIU_INT,&n);CHKERRQ(ierr);
18520ac07820SSatish Balay     source[imdex]  = recv_status.MPI_SOURCE;
18530ac07820SSatish Balay     lens[imdex]    = n;
18540ac07820SSatish Balay     slen          += n;
18550ac07820SSatish Balay     count--;
18560ac07820SSatish Balay   }
1857606d414cSSatish Balay   ierr = PetscFree(recv_waits);CHKERRQ(ierr);
18580ac07820SSatish Balay 
18590ac07820SSatish Balay   /* move the data into the send scatter */
1860b24ad042SBarry Smith   ierr = PetscMalloc((slen+1)*sizeof(PetscInt),&lrows);CHKERRQ(ierr);
18610ac07820SSatish Balay   count = 0;
18620ac07820SSatish Balay   for (i=0; i<nrecvs; i++) {
18630ac07820SSatish Balay     values = rvalues + i*nmax;
18640ac07820SSatish Balay     for (j=0; j<lens[i]; j++) {
18650ac07820SSatish Balay       lrows[count++] = values[j] - base;
18660ac07820SSatish Balay     }
18670ac07820SSatish Balay   }
1868606d414cSSatish Balay   ierr = PetscFree(rvalues);CHKERRQ(ierr);
1869606d414cSSatish Balay   ierr = PetscFree(lens);CHKERRQ(ierr);
1870606d414cSSatish Balay   ierr = PetscFree(owner);CHKERRQ(ierr);
1871606d414cSSatish Balay   ierr = PetscFree(nprocs);CHKERRQ(ierr);
18720ac07820SSatish Balay 
18730ac07820SSatish Balay   /* actually zap the local rows */
1874029af93fSBarry Smith   ierr = ISCreateGeneral(PETSC_COMM_SELF,slen,lrows,&istmp);CHKERRQ(ierr);
187552e6d16bSBarry Smith   ierr = PetscLogObjectParent(A,istmp);CHKERRQ(ierr);
1876a07cd24cSSatish Balay 
187772dacd9aSBarry Smith   /*
187872dacd9aSBarry Smith         Zero the required rows. If the "diagonal block" of the matrix
187972dacd9aSBarry Smith      is square and the user wishes to set the diagonal we use seperate
188072dacd9aSBarry Smith      code so that MatSetValues() is not called for each diagonal allocating
188172dacd9aSBarry Smith      new memory, thus calling lots of mallocs and slowing things down.
188272dacd9aSBarry Smith 
188372dacd9aSBarry Smith        Contributed by: Mathew Knepley
188472dacd9aSBarry Smith   */
18859c957beeSSatish Balay   /* must zero l->B before l->A because the (diag) case below may put values into l->B*/
18866fa18ffdSBarry Smith   ierr = MatZeroRows_SeqBAIJ(l->B,istmp,0);CHKERRQ(ierr);
18879c957beeSSatish Balay   if (diag && (l->A->M == l->A->N)) {
18886fa18ffdSBarry Smith     ierr = MatZeroRows_SeqBAIJ(l->A,istmp,diag);CHKERRQ(ierr);
18899c957beeSSatish Balay   } else if (diag) {
18906fa18ffdSBarry Smith     ierr = MatZeroRows_SeqBAIJ(l->A,istmp,0);CHKERRQ(ierr);
1891fa46199cSSatish Balay     if (((Mat_SeqBAIJ*)l->A->data)->nonew) {
189229bbc08cSBarry Smith       SETERRQ(PETSC_ERR_SUP,"MatZeroRows() on rectangular matrices cannot be used with the Mat options \n\
1893fa46199cSSatish Balay MAT_NO_NEW_NONZERO_LOCATIONS,MAT_NEW_NONZERO_LOCATION_ERR,MAT_NEW_NONZERO_ALLOCATION_ERR");
18946525c446SSatish Balay     }
1895a07cd24cSSatish Balay     for (i=0; i<slen; i++) {
1896a07cd24cSSatish Balay       row  = lrows[i] + rstart_bs;
18973f11ea53SBarry Smith       ierr = MatSetValues(A,1,&row,1,&row,diag,INSERT_VALUES);CHKERRQ(ierr);
1898a07cd24cSSatish Balay     }
1899a07cd24cSSatish Balay     ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
1900a07cd24cSSatish Balay     ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
19019c957beeSSatish Balay   } else {
19026fa18ffdSBarry Smith     ierr = MatZeroRows_SeqBAIJ(l->A,istmp,0);CHKERRQ(ierr);
1903a07cd24cSSatish Balay   }
19049c957beeSSatish Balay 
19059c957beeSSatish Balay   ierr = ISDestroy(istmp);CHKERRQ(ierr);
1906606d414cSSatish Balay   ierr = PetscFree(lrows);CHKERRQ(ierr);
1907a07cd24cSSatish Balay 
19080ac07820SSatish Balay   /* wait on sends */
19090ac07820SSatish Balay   if (nsends) {
191082502324SSatish Balay     ierr = PetscMalloc(nsends*sizeof(MPI_Status),&send_status);CHKERRQ(ierr);
1911ca161407SBarry Smith     ierr = MPI_Waitall(nsends,send_waits,send_status);CHKERRQ(ierr);
1912606d414cSSatish Balay     ierr = PetscFree(send_status);CHKERRQ(ierr);
19130ac07820SSatish Balay   }
1914606d414cSSatish Balay   ierr = PetscFree(send_waits);CHKERRQ(ierr);
1915606d414cSSatish Balay   ierr = PetscFree(svalues);CHKERRQ(ierr);
19160ac07820SSatish Balay 
19173a40ed3dSBarry Smith   PetscFunctionReturn(0);
19180ac07820SSatish Balay }
191972dacd9aSBarry Smith 
19204a2ae208SSatish Balay #undef __FUNCT__
19214a2ae208SSatish Balay #define __FUNCT__ "MatPrintHelp_MPIBAIJ"
1922dfbe8321SBarry Smith PetscErrorCode MatPrintHelp_MPIBAIJ(Mat A)
1923ba4ca20aSSatish Balay {
1924ba4ca20aSSatish Balay   Mat_MPIBAIJ       *a   = (Mat_MPIBAIJ*)A->data;
192525fdafccSSatish Balay   MPI_Comm          comm = A->comm;
1926b24ad042SBarry Smith   static PetscTruth called = PETSC_FALSE;
1927dfbe8321SBarry Smith   PetscErrorCode    ierr;
1928ba4ca20aSSatish Balay 
1929d64ed03dSBarry Smith   PetscFunctionBegin;
19303a40ed3dSBarry Smith   if (!a->rank) {
19313a40ed3dSBarry Smith     ierr = MatPrintHelp_SeqBAIJ(a->A);CHKERRQ(ierr);
193225fdafccSSatish Balay   }
1933b24ad042SBarry Smith   if (called) {PetscFunctionReturn(0);} else called = PETSC_TRUE;
1934d132466eSBarry Smith   ierr = (*PetscHelpPrintf)(comm," Options for MATMPIBAIJ matrix format (the defaults):\n");CHKERRQ(ierr);
1935d132466eSBarry Smith   ierr = (*PetscHelpPrintf)(comm,"  -mat_use_hash_table <factor>: Use hashtable for efficient matrix assembly\n");CHKERRQ(ierr);
19363a40ed3dSBarry Smith   PetscFunctionReturn(0);
1937ba4ca20aSSatish Balay }
19380ac07820SSatish Balay 
19394a2ae208SSatish Balay #undef __FUNCT__
19404a2ae208SSatish Balay #define __FUNCT__ "MatSetUnfactored_MPIBAIJ"
1941dfbe8321SBarry Smith PetscErrorCode MatSetUnfactored_MPIBAIJ(Mat A)
1942bb5a7306SBarry Smith {
1943bb5a7306SBarry Smith   Mat_MPIBAIJ    *a   = (Mat_MPIBAIJ*)A->data;
1944dfbe8321SBarry Smith   PetscErrorCode ierr;
1945d64ed03dSBarry Smith 
1946d64ed03dSBarry Smith   PetscFunctionBegin;
1947bb5a7306SBarry Smith   ierr = MatSetUnfactored(a->A);CHKERRQ(ierr);
19483a40ed3dSBarry Smith   PetscFunctionReturn(0);
1949bb5a7306SBarry Smith }
1950bb5a7306SBarry Smith 
19516849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIBAIJ(Mat,MatDuplicateOption,Mat *);
19520ac07820SSatish Balay 
19534a2ae208SSatish Balay #undef __FUNCT__
19544a2ae208SSatish Balay #define __FUNCT__ "MatEqual_MPIBAIJ"
1955dfbe8321SBarry Smith PetscErrorCode MatEqual_MPIBAIJ(Mat A,Mat B,PetscTruth *flag)
19567fc3c18eSBarry Smith {
19577fc3c18eSBarry Smith   Mat_MPIBAIJ    *matB = (Mat_MPIBAIJ*)B->data,*matA = (Mat_MPIBAIJ*)A->data;
19587fc3c18eSBarry Smith   Mat            a,b,c,d;
19597fc3c18eSBarry Smith   PetscTruth     flg;
1960dfbe8321SBarry Smith   PetscErrorCode ierr;
19617fc3c18eSBarry Smith 
19627fc3c18eSBarry Smith   PetscFunctionBegin;
19637fc3c18eSBarry Smith   a = matA->A; b = matA->B;
19647fc3c18eSBarry Smith   c = matB->A; d = matB->B;
19657fc3c18eSBarry Smith 
19667fc3c18eSBarry Smith   ierr = MatEqual(a,c,&flg);CHKERRQ(ierr);
1967abc0a331SBarry Smith   if (flg) {
19687fc3c18eSBarry Smith     ierr = MatEqual(b,d,&flg);CHKERRQ(ierr);
19697fc3c18eSBarry Smith   }
19707fc3c18eSBarry Smith   ierr = MPI_Allreduce(&flg,flag,1,MPI_INT,MPI_LAND,A->comm);CHKERRQ(ierr);
19717fc3c18eSBarry Smith   PetscFunctionReturn(0);
19727fc3c18eSBarry Smith }
19737fc3c18eSBarry Smith 
1974273d9f13SBarry Smith 
19754a2ae208SSatish Balay #undef __FUNCT__
19764a2ae208SSatish Balay #define __FUNCT__ "MatSetUpPreallocation_MPIBAIJ"
1977dfbe8321SBarry Smith PetscErrorCode MatSetUpPreallocation_MPIBAIJ(Mat A)
1978273d9f13SBarry Smith {
1979dfbe8321SBarry Smith   PetscErrorCode ierr;
1980273d9f13SBarry Smith 
1981273d9f13SBarry Smith   PetscFunctionBegin;
1982273d9f13SBarry Smith   ierr =  MatMPIBAIJSetPreallocation(A,1,PETSC_DEFAULT,0,PETSC_DEFAULT,0);CHKERRQ(ierr);
1983273d9f13SBarry Smith   PetscFunctionReturn(0);
1984273d9f13SBarry Smith }
1985273d9f13SBarry Smith 
198679bdfe76SSatish Balay /* -------------------------------------------------------------------*/
1987cc2dc46cSBarry Smith static struct _MatOps MatOps_Values = {
1988cc2dc46cSBarry Smith        MatSetValues_MPIBAIJ,
1989cc2dc46cSBarry Smith        MatGetRow_MPIBAIJ,
1990cc2dc46cSBarry Smith        MatRestoreRow_MPIBAIJ,
1991cc2dc46cSBarry Smith        MatMult_MPIBAIJ,
199297304618SKris Buschelman /* 4*/ MatMultAdd_MPIBAIJ,
19937c922b88SBarry Smith        MatMultTranspose_MPIBAIJ,
19947c922b88SBarry Smith        MatMultTransposeAdd_MPIBAIJ,
1995cc2dc46cSBarry Smith        0,
1996cc2dc46cSBarry Smith        0,
1997cc2dc46cSBarry Smith        0,
199897304618SKris Buschelman /*10*/ 0,
1999cc2dc46cSBarry Smith        0,
2000cc2dc46cSBarry Smith        0,
2001cc2dc46cSBarry Smith        0,
2002cc2dc46cSBarry Smith        MatTranspose_MPIBAIJ,
200397304618SKris Buschelman /*15*/ MatGetInfo_MPIBAIJ,
20047fc3c18eSBarry Smith        MatEqual_MPIBAIJ,
2005cc2dc46cSBarry Smith        MatGetDiagonal_MPIBAIJ,
2006cc2dc46cSBarry Smith        MatDiagonalScale_MPIBAIJ,
2007cc2dc46cSBarry Smith        MatNorm_MPIBAIJ,
200897304618SKris Buschelman /*20*/ MatAssemblyBegin_MPIBAIJ,
2009cc2dc46cSBarry Smith        MatAssemblyEnd_MPIBAIJ,
2010cc2dc46cSBarry Smith        0,
2011cc2dc46cSBarry Smith        MatSetOption_MPIBAIJ,
2012cc2dc46cSBarry Smith        MatZeroEntries_MPIBAIJ,
201397304618SKris Buschelman /*25*/ MatZeroRows_MPIBAIJ,
2014cc2dc46cSBarry Smith        0,
2015cc2dc46cSBarry Smith        0,
2016cc2dc46cSBarry Smith        0,
2017cc2dc46cSBarry Smith        0,
201897304618SKris Buschelman /*30*/ MatSetUpPreallocation_MPIBAIJ,
2019273d9f13SBarry Smith        0,
2020cc2dc46cSBarry Smith        0,
2021cc2dc46cSBarry Smith        0,
2022cc2dc46cSBarry Smith        0,
202397304618SKris Buschelman /*35*/ MatDuplicate_MPIBAIJ,
2024cc2dc46cSBarry Smith        0,
2025cc2dc46cSBarry Smith        0,
2026cc2dc46cSBarry Smith        0,
2027cc2dc46cSBarry Smith        0,
202897304618SKris Buschelman /*40*/ 0,
2029cc2dc46cSBarry Smith        MatGetSubMatrices_MPIBAIJ,
2030cc2dc46cSBarry Smith        MatIncreaseOverlap_MPIBAIJ,
2031cc2dc46cSBarry Smith        MatGetValues_MPIBAIJ,
2032cc2dc46cSBarry Smith        0,
203397304618SKris Buschelman /*45*/ MatPrintHelp_MPIBAIJ,
2034cc2dc46cSBarry Smith        MatScale_MPIBAIJ,
2035cc2dc46cSBarry Smith        0,
2036cc2dc46cSBarry Smith        0,
2037cc2dc46cSBarry Smith        0,
2038521d7252SBarry Smith /*50*/ 0,
2039cc2dc46cSBarry Smith        0,
2040cc2dc46cSBarry Smith        0,
2041cc2dc46cSBarry Smith        0,
2042cc2dc46cSBarry Smith        0,
204397304618SKris Buschelman /*55*/ 0,
2044cc2dc46cSBarry Smith        0,
2045cc2dc46cSBarry Smith        MatSetUnfactored_MPIBAIJ,
2046cc2dc46cSBarry Smith        0,
2047cc2dc46cSBarry Smith        MatSetValuesBlocked_MPIBAIJ,
204897304618SKris Buschelman /*60*/ 0,
2049f14a1c24SBarry Smith        MatDestroy_MPIBAIJ,
2050f14a1c24SBarry Smith        MatView_MPIBAIJ,
20518a124369SBarry Smith        MatGetPetscMaps_Petsc,
20527843d17aSBarry Smith        0,
205397304618SKris Buschelman /*65*/ 0,
20547843d17aSBarry Smith        0,
20557843d17aSBarry Smith        0,
20567843d17aSBarry Smith        0,
20577843d17aSBarry Smith        0,
205897304618SKris Buschelman /*70*/ MatGetRowMax_MPIBAIJ,
20597843d17aSBarry Smith        0,
206097304618SKris Buschelman        0,
206197304618SKris Buschelman        0,
206297304618SKris Buschelman        0,
206397304618SKris Buschelman /*75*/ 0,
206497304618SKris Buschelman        0,
206597304618SKris Buschelman        0,
206697304618SKris Buschelman        0,
206797304618SKris Buschelman        0,
206897304618SKris Buschelman /*80*/ 0,
206997304618SKris Buschelman        0,
207097304618SKris Buschelman        0,
207197304618SKris Buschelman        0,
2072865e5f61SKris Buschelman        MatLoad_MPIBAIJ,
2073865e5f61SKris Buschelman /*85*/ 0,
2074865e5f61SKris Buschelman        0,
2075865e5f61SKris Buschelman        0,
2076865e5f61SKris Buschelman        0,
2077865e5f61SKris Buschelman        0,
2078865e5f61SKris Buschelman /*90*/ 0,
2079865e5f61SKris Buschelman        0,
2080865e5f61SKris Buschelman        0,
2081865e5f61SKris Buschelman        0,
2082865e5f61SKris Buschelman        0,
2083865e5f61SKris Buschelman /*95*/ 0,
2084865e5f61SKris Buschelman        0,
2085865e5f61SKris Buschelman        0,
2086865e5f61SKris Buschelman        0};
208779bdfe76SSatish Balay 
20885ef9f2a5SBarry Smith 
2089e18c124aSSatish Balay EXTERN_C_BEGIN
20904a2ae208SSatish Balay #undef __FUNCT__
20914a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonalBlock_MPIBAIJ"
2092dfbe8321SBarry Smith PetscErrorCode MatGetDiagonalBlock_MPIBAIJ(Mat A,PetscTruth *iscopy,MatReuse reuse,Mat *a)
20935ef9f2a5SBarry Smith {
20945ef9f2a5SBarry Smith   PetscFunctionBegin;
20955ef9f2a5SBarry Smith   *a      = ((Mat_MPIBAIJ *)A->data)->A;
20965ef9f2a5SBarry Smith   *iscopy = PETSC_FALSE;
20975ef9f2a5SBarry Smith   PetscFunctionReturn(0);
20985ef9f2a5SBarry Smith }
2099e18c124aSSatish Balay EXTERN_C_END
210079bdfe76SSatish Balay 
2101273d9f13SBarry Smith EXTERN_C_BEGIN
2102ceb03754SKris Buschelman extern int MatConvert_MPIBAIJ_MPISBAIJ(Mat,const MatType,MatReuse,Mat*);
2103d94109b8SHong Zhang EXTERN_C_END
2104d94109b8SHong Zhang 
2105aac34f13SBarry Smith #undef __FUNCT__
2106aac34f13SBarry Smith #define __FUNCT__ "MatMPIBAIJSetPreallocationCSR_MPIBAIJ"
2107aac34f13SBarry Smith PetscErrorCode MatMPIBAIJSetPreallocationCSR_MPIBAIJ(Mat B,PetscInt bs,const PetscInt I[],const PetscInt J[],const PetscScalar v[])
2108aac34f13SBarry Smith {
2109aac34f13SBarry Smith   Mat_MPIBAIJ    *b  = (Mat_MPIBAIJ *)B->data;
2110aac34f13SBarry Smith   PetscInt       m = B->m/bs,cstart = b->cstart, cend = b->cend,j,nnz,i,d;
2111aac34f13SBarry Smith   PetscInt       *d_nnz,*o_nnz,nnz_max = 0,rstart = b->rstart,ii;
2112aac34f13SBarry Smith   const PetscInt *JJ;
2113aac34f13SBarry Smith   PetscScalar    *values;
2114aac34f13SBarry Smith   PetscErrorCode ierr;
2115aac34f13SBarry Smith 
2116aac34f13SBarry Smith   PetscFunctionBegin;
2117aac34f13SBarry Smith #if defined(PETSC_OPT_g)
2118aac34f13SBarry Smith   if (I[0]) SETERRQ1(PETSC_ERR_ARG_RANGE,"I[0] must be 0 it is %D",I[0]);
2119aac34f13SBarry Smith #endif
2120aac34f13SBarry Smith   ierr  = PetscMalloc((2*m+1)*sizeof(PetscInt),&d_nnz);CHKERRQ(ierr);
2121aac34f13SBarry Smith   o_nnz = d_nnz + m;
2122aac34f13SBarry Smith 
2123aac34f13SBarry Smith   for (i=0; i<m; i++) {
2124aac34f13SBarry Smith     nnz     = I[i+1]- I[i];
2125aac34f13SBarry Smith     JJ      = J + I[i];
2126aac34f13SBarry Smith     nnz_max = PetscMax(nnz_max,nnz);
2127aac34f13SBarry Smith #if defined(PETSC_OPT_g)
2128aac34f13SBarry Smith     if (nnz < 0) SETERRQ1(PETSC_ERR_ARG_RANGE,"Local row %D has a negative %D number of columns",i,nnz);
2129aac34f13SBarry Smith #endif
2130aac34f13SBarry Smith     for (j=0; j<nnz; j++) {
2131aac34f13SBarry Smith       if (*JJ >= cstart) break;
2132aac34f13SBarry Smith       JJ++;
2133aac34f13SBarry Smith     }
2134aac34f13SBarry Smith     d = 0;
2135aac34f13SBarry Smith     for (; j<nnz; j++) {
2136aac34f13SBarry Smith       if (*JJ++ >= cend) break;
2137aac34f13SBarry Smith       d++;
2138aac34f13SBarry Smith     }
2139aac34f13SBarry Smith     d_nnz[i] = d;
2140aac34f13SBarry Smith     o_nnz[i] = nnz - d;
2141aac34f13SBarry Smith   }
2142aac34f13SBarry Smith   ierr = MatMPIBAIJSetPreallocation(B,bs,0,d_nnz,0,o_nnz);CHKERRQ(ierr);
2143aac34f13SBarry Smith   ierr = PetscFree(d_nnz);CHKERRQ(ierr);
2144aac34f13SBarry Smith 
2145aac34f13SBarry Smith   if (v) values = (PetscScalar*)v;
2146aac34f13SBarry Smith   else {
2147aac34f13SBarry Smith     ierr = PetscMalloc(bs*bs*(nnz_max+1)*sizeof(PetscScalar),&values);CHKERRQ(ierr);
2148aac34f13SBarry Smith     ierr = PetscMemzero(values,bs*bs*nnz_max*sizeof(PetscScalar));CHKERRQ(ierr);
2149aac34f13SBarry Smith   }
2150aac34f13SBarry Smith 
2151aac34f13SBarry Smith   ierr = MatSetOption(B,MAT_COLUMNS_SORTED);CHKERRQ(ierr);
2152aac34f13SBarry Smith   for (i=0; i<m; i++) {
2153aac34f13SBarry Smith     ii   = i + rstart;
2154aac34f13SBarry Smith     nnz  = I[i+1]- I[i];
2155aac34f13SBarry Smith     ierr = MatSetValuesBlocked_MPIBAIJ(B,1,&ii,nnz,J+I[i],values,INSERT_VALUES);CHKERRQ(ierr);
2156aac34f13SBarry Smith   }
2157aac34f13SBarry Smith   ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
2158aac34f13SBarry Smith   ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
2159aac34f13SBarry Smith   ierr = MatSetOption(B,MAT_COLUMNS_UNSORTED);CHKERRQ(ierr);
2160aac34f13SBarry Smith 
2161aac34f13SBarry Smith   if (!v) {
2162aac34f13SBarry Smith     ierr = PetscFree(values);CHKERRQ(ierr);
2163aac34f13SBarry Smith   }
2164aac34f13SBarry Smith   PetscFunctionReturn(0);
2165aac34f13SBarry Smith }
2166aac34f13SBarry Smith 
2167aac34f13SBarry Smith #undef __FUNCT__
2168aac34f13SBarry Smith #define __FUNCT__ "MatMPIBAIJSetPreallocationCSR"
2169aac34f13SBarry Smith /*@C
2170aac34f13SBarry Smith    MatMPIBAIJSetPreallocationCSR - Allocates memory for a sparse parallel matrix in AIJ format
2171aac34f13SBarry Smith    (the default parallel PETSc format).
2172aac34f13SBarry Smith 
2173aac34f13SBarry Smith    Collective on MPI_Comm
2174aac34f13SBarry Smith 
2175aac34f13SBarry Smith    Input Parameters:
2176aac34f13SBarry Smith +  A - the matrix
2177aac34f13SBarry Smith .  i - the indices into j for the start of each local row (starts with zero)
2178aac34f13SBarry Smith .  j - the column indices for each local row (starts with zero) these must be sorted for each row
2179aac34f13SBarry Smith -  v - optional values in the matrix
2180aac34f13SBarry Smith 
2181aac34f13SBarry Smith    Level: developer
2182aac34f13SBarry Smith 
2183aac34f13SBarry Smith .keywords: matrix, aij, compressed row, sparse, parallel
2184aac34f13SBarry Smith 
2185aac34f13SBarry Smith .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatMPIBAIJSetPreallocation(), MatCreateMPIAIJ(), MPIAIJ
2186aac34f13SBarry Smith @*/
2187aac34f13SBarry Smith PetscErrorCode MatMPIBAIJSetPreallocationCSR(Mat B,PetscInt bs,const PetscInt i[],const PetscInt j[], const PetscScalar v[])
2188aac34f13SBarry Smith {
2189aac34f13SBarry Smith   PetscErrorCode ierr,(*f)(Mat,PetscInt,const PetscInt[],const PetscInt[],const PetscScalar[]);
2190aac34f13SBarry Smith 
2191aac34f13SBarry Smith   PetscFunctionBegin;
2192aac34f13SBarry Smith   ierr = PetscObjectQueryFunction((PetscObject)B,"MatMPIBAIJSetPreallocationCSR_C",(void (**)(void))&f);CHKERRQ(ierr);
2193aac34f13SBarry Smith   if (f) {
2194aac34f13SBarry Smith     ierr = (*f)(B,bs,i,j,v);CHKERRQ(ierr);
2195aac34f13SBarry Smith   }
2196aac34f13SBarry Smith   PetscFunctionReturn(0);
2197aac34f13SBarry Smith }
2198aac34f13SBarry Smith 
2199d94109b8SHong Zhang EXTERN_C_BEGIN
22004a2ae208SSatish Balay #undef __FUNCT__
2201a23d5eceSKris Buschelman #define __FUNCT__ "MatMPIBAIJSetPreallocation_MPIBAIJ"
2202b24ad042SBarry Smith PetscErrorCode MatMPIBAIJSetPreallocation_MPIBAIJ(Mat B,PetscInt bs,PetscInt d_nz,PetscInt *d_nnz,PetscInt o_nz,PetscInt *o_nnz)
2203a23d5eceSKris Buschelman {
2204a23d5eceSKris Buschelman   Mat_MPIBAIJ    *b;
2205dfbe8321SBarry Smith   PetscErrorCode ierr;
2206b24ad042SBarry Smith   PetscInt       i;
2207a23d5eceSKris Buschelman 
2208a23d5eceSKris Buschelman   PetscFunctionBegin;
2209a23d5eceSKris Buschelman   B->preallocated = PETSC_TRUE;
2210a23d5eceSKris Buschelman   ierr = PetscOptionsGetInt(PETSC_NULL,"-mat_block_size",&bs,PETSC_NULL);CHKERRQ(ierr);
2211a23d5eceSKris Buschelman 
2212a23d5eceSKris Buschelman   if (bs < 1) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Invalid block size specified, must be positive");
2213a23d5eceSKris Buschelman   if (d_nz == PETSC_DEFAULT || d_nz == PETSC_DECIDE) d_nz = 5;
2214a23d5eceSKris Buschelman   if (o_nz == PETSC_DEFAULT || o_nz == PETSC_DECIDE) o_nz = 2;
221577431f27SBarry Smith   if (d_nz < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"d_nz cannot be less than 0: value %D",d_nz);
221677431f27SBarry Smith   if (o_nz < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"o_nz cannot be less than 0: value %D",o_nz);
2217a23d5eceSKris Buschelman   if (d_nnz) {
2218a23d5eceSKris Buschelman   for (i=0; i<B->m/bs; i++) {
221977431f27SBarry Smith       if (d_nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"d_nnz cannot be less than -1: local row %D value %D",i,d_nnz[i]);
2220a23d5eceSKris Buschelman     }
2221a23d5eceSKris Buschelman   }
2222a23d5eceSKris Buschelman   if (o_nnz) {
2223a23d5eceSKris Buschelman     for (i=0; i<B->m/bs; i++) {
222477431f27SBarry Smith       if (o_nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"o_nnz cannot be less than -1: local row %D value %D",i,o_nnz[i]);
2225a23d5eceSKris Buschelman     }
2226a23d5eceSKris Buschelman   }
2227a23d5eceSKris Buschelman 
2228a23d5eceSKris Buschelman   ierr = PetscSplitOwnershipBlock(B->comm,bs,&B->m,&B->M);CHKERRQ(ierr);
2229a23d5eceSKris Buschelman   ierr = PetscSplitOwnershipBlock(B->comm,bs,&B->n,&B->N);CHKERRQ(ierr);
2230a23d5eceSKris Buschelman   ierr = PetscMapCreateMPI(B->comm,B->m,B->M,&B->rmap);CHKERRQ(ierr);
2231a23d5eceSKris Buschelman   ierr = PetscMapCreateMPI(B->comm,B->n,B->N,&B->cmap);CHKERRQ(ierr);
2232a23d5eceSKris Buschelman 
2233a23d5eceSKris Buschelman   b = (Mat_MPIBAIJ*)B->data;
2234521d7252SBarry Smith   B->bs  = bs;
2235a23d5eceSKris Buschelman   b->bs2 = bs*bs;
2236a23d5eceSKris Buschelman   b->mbs = B->m/bs;
2237a23d5eceSKris Buschelman   b->nbs = B->n/bs;
2238a23d5eceSKris Buschelman   b->Mbs = B->M/bs;
2239a23d5eceSKris Buschelman   b->Nbs = B->N/bs;
2240a23d5eceSKris Buschelman 
2241b24ad042SBarry Smith   ierr = MPI_Allgather(&b->mbs,1,MPIU_INT,b->rowners+1,1,MPIU_INT,B->comm);CHKERRQ(ierr);
2242a23d5eceSKris Buschelman   b->rowners[0]    = 0;
2243a23d5eceSKris Buschelman   for (i=2; i<=b->size; i++) {
2244a23d5eceSKris Buschelman     b->rowners[i] += b->rowners[i-1];
2245a23d5eceSKris Buschelman   }
2246a23d5eceSKris Buschelman   b->rstart    = b->rowners[b->rank];
2247a23d5eceSKris Buschelman   b->rend      = b->rowners[b->rank+1];
2248a23d5eceSKris Buschelman 
2249b24ad042SBarry Smith   ierr = MPI_Allgather(&b->nbs,1,MPIU_INT,b->cowners+1,1,MPIU_INT,B->comm);CHKERRQ(ierr);
2250a23d5eceSKris Buschelman   b->cowners[0] = 0;
2251a23d5eceSKris Buschelman   for (i=2; i<=b->size; i++) {
2252a23d5eceSKris Buschelman     b->cowners[i] += b->cowners[i-1];
2253a23d5eceSKris Buschelman   }
2254a23d5eceSKris Buschelman   b->cstart    = b->cowners[b->rank];
2255a23d5eceSKris Buschelman   b->cend      = b->cowners[b->rank+1];
2256a23d5eceSKris Buschelman 
2257a23d5eceSKris Buschelman   for (i=0; i<=b->size; i++) {
2258a23d5eceSKris Buschelman     b->rowners_bs[i] = b->rowners[i]*bs;
2259a23d5eceSKris Buschelman   }
2260a23d5eceSKris Buschelman   b->rstart_bs = b->rstart*bs;
2261a23d5eceSKris Buschelman   b->rend_bs   = b->rend*bs;
2262a23d5eceSKris Buschelman   b->cstart_bs = b->cstart*bs;
2263a23d5eceSKris Buschelman   b->cend_bs   = b->cend*bs;
2264a23d5eceSKris Buschelman 
22659c097c71SKris Buschelman   ierr = MatCreate(PETSC_COMM_SELF,B->m,B->n,B->m,B->n,&b->A);CHKERRQ(ierr);
22669c097c71SKris Buschelman   ierr = MatSetType(b->A,MATSEQBAIJ);CHKERRQ(ierr);
2267c60e587dSKris Buschelman   ierr = MatSeqBAIJSetPreallocation(b->A,bs,d_nz,d_nnz);CHKERRQ(ierr);
226852e6d16bSBarry Smith   ierr = PetscLogObjectParent(B,b->A);CHKERRQ(ierr);
22699c097c71SKris Buschelman   ierr = MatCreate(PETSC_COMM_SELF,B->m,B->N,B->m,B->N,&b->B);CHKERRQ(ierr);
22709c097c71SKris Buschelman   ierr = MatSetType(b->B,MATSEQBAIJ);CHKERRQ(ierr);
2271c60e587dSKris Buschelman   ierr = MatSeqBAIJSetPreallocation(b->B,bs,o_nz,o_nnz);CHKERRQ(ierr);
227252e6d16bSBarry Smith   ierr = PetscLogObjectParent(B,b->B);CHKERRQ(ierr);
2273c60e587dSKris Buschelman 
2274a23d5eceSKris Buschelman   ierr = MatStashCreate_Private(B->comm,bs,&B->bstash);CHKERRQ(ierr);
2275a23d5eceSKris Buschelman 
2276a23d5eceSKris Buschelman   PetscFunctionReturn(0);
2277a23d5eceSKris Buschelman }
2278a23d5eceSKris Buschelman EXTERN_C_END
2279a23d5eceSKris Buschelman 
2280a23d5eceSKris Buschelman EXTERN_C_BEGIN
2281dfbe8321SBarry Smith EXTERN PetscErrorCode MatDiagonalScaleLocal_MPIBAIJ(Mat,Vec);
2282dfbe8321SBarry Smith EXTERN PetscErrorCode MatSetHashTableFactor_MPIBAIJ(Mat,PetscReal);
228392b32695SKris Buschelman EXTERN_C_END
22845bf65638SKris Buschelman 
22850bad9183SKris Buschelman /*MC
2286fafad747SKris Buschelman    MATMPIBAIJ - MATMPIBAIJ = "mpibaij" - A matrix type to be used for distributed block sparse matrices.
22870bad9183SKris Buschelman 
22880bad9183SKris Buschelman    Options Database Keys:
22890bad9183SKris Buschelman . -mat_type mpibaij - sets the matrix type to "mpibaij" during a call to MatSetFromOptions()
22900bad9183SKris Buschelman 
22910bad9183SKris Buschelman   Level: beginner
22920bad9183SKris Buschelman 
22930bad9183SKris Buschelman .seealso: MatCreateMPIBAIJ
22940bad9183SKris Buschelman M*/
22950bad9183SKris Buschelman 
229692b32695SKris Buschelman EXTERN_C_BEGIN
2297a23d5eceSKris Buschelman #undef __FUNCT__
22984a2ae208SSatish Balay #define __FUNCT__ "MatCreate_MPIBAIJ"
2299dfbe8321SBarry Smith PetscErrorCode MatCreate_MPIBAIJ(Mat B)
2300273d9f13SBarry Smith {
2301273d9f13SBarry Smith   Mat_MPIBAIJ    *b;
2302dfbe8321SBarry Smith   PetscErrorCode ierr;
2303273d9f13SBarry Smith   PetscTruth     flg;
2304273d9f13SBarry Smith 
2305273d9f13SBarry Smith   PetscFunctionBegin;
230682502324SSatish Balay   ierr = PetscNew(Mat_MPIBAIJ,&b);CHKERRQ(ierr);
230782502324SSatish Balay   B->data = (void*)b;
230882502324SSatish Balay 
2309273d9f13SBarry Smith   ierr    = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr);
2310273d9f13SBarry Smith   B->mapping    = 0;
2311273d9f13SBarry Smith   B->factor     = 0;
2312273d9f13SBarry Smith   B->assembled  = PETSC_FALSE;
2313273d9f13SBarry Smith 
2314273d9f13SBarry Smith   B->insertmode = NOT_SET_VALUES;
2315273d9f13SBarry Smith   ierr = MPI_Comm_rank(B->comm,&b->rank);CHKERRQ(ierr);
2316273d9f13SBarry Smith   ierr = MPI_Comm_size(B->comm,&b->size);CHKERRQ(ierr);
2317273d9f13SBarry Smith 
2318273d9f13SBarry Smith   /* build local table of row and column ownerships */
2319b24ad042SBarry Smith   ierr          = PetscMalloc(3*(b->size+2)*sizeof(PetscInt),&b->rowners);CHKERRQ(ierr);
232052e6d16bSBarry Smith   ierr = PetscLogObjectMemory(B,3*(b->size+2)*sizeof(PetscInt)+sizeof(struct _p_Mat)+sizeof(Mat_MPIBAIJ));CHKERRQ(ierr);
2321273d9f13SBarry Smith   b->cowners    = b->rowners + b->size + 2;
2322273d9f13SBarry Smith   b->rowners_bs = b->cowners + b->size + 2;
2323273d9f13SBarry Smith 
2324273d9f13SBarry Smith   /* build cache for off array entries formed */
2325273d9f13SBarry Smith   ierr = MatStashCreate_Private(B->comm,1,&B->stash);CHKERRQ(ierr);
2326273d9f13SBarry Smith   b->donotstash  = PETSC_FALSE;
2327273d9f13SBarry Smith   b->colmap      = PETSC_NULL;
2328273d9f13SBarry Smith   b->garray      = PETSC_NULL;
2329273d9f13SBarry Smith   b->roworiented = PETSC_TRUE;
2330273d9f13SBarry Smith 
2331cfce73b9SSatish Balay #if defined(PETSC_USE_MAT_SINGLE)
2332273d9f13SBarry Smith   /* stuff for MatSetValues_XXX in single precision */
233364a35ccbSBarry Smith   b->setvalueslen     = 0;
2334273d9f13SBarry Smith   b->setvaluescopy    = PETSC_NULL;
2335273d9f13SBarry Smith #endif
2336273d9f13SBarry Smith 
2337273d9f13SBarry Smith   /* stuff used in block assembly */
2338273d9f13SBarry Smith   b->barray       = 0;
2339273d9f13SBarry Smith 
2340273d9f13SBarry Smith   /* stuff used for matrix vector multiply */
2341273d9f13SBarry Smith   b->lvec         = 0;
2342273d9f13SBarry Smith   b->Mvctx        = 0;
2343273d9f13SBarry Smith 
2344273d9f13SBarry Smith   /* stuff for MatGetRow() */
2345273d9f13SBarry Smith   b->rowindices   = 0;
2346273d9f13SBarry Smith   b->rowvalues    = 0;
2347273d9f13SBarry Smith   b->getrowactive = PETSC_FALSE;
2348273d9f13SBarry Smith 
2349273d9f13SBarry Smith   /* hash table stuff */
2350273d9f13SBarry Smith   b->ht           = 0;
2351273d9f13SBarry Smith   b->hd           = 0;
2352273d9f13SBarry Smith   b->ht_size      = 0;
2353273d9f13SBarry Smith   b->ht_flag      = PETSC_FALSE;
2354273d9f13SBarry Smith   b->ht_fact      = 0;
2355273d9f13SBarry Smith   b->ht_total_ct  = 0;
2356273d9f13SBarry Smith   b->ht_insert_ct = 0;
2357273d9f13SBarry Smith 
2358b0a32e0cSBarry Smith   ierr = PetscOptionsHasName(PETSC_NULL,"-mat_use_hash_table",&flg);CHKERRQ(ierr);
2359273d9f13SBarry Smith   if (flg) {
2360f6275e2eSBarry Smith     PetscReal fact = 1.39;
2361273d9f13SBarry Smith     ierr = MatSetOption(B,MAT_USE_HASH_TABLE);CHKERRQ(ierr);
236287828ca2SBarry Smith     ierr = PetscOptionsGetReal(PETSC_NULL,"-mat_use_hash_table",&fact,PETSC_NULL);CHKERRQ(ierr);
2363273d9f13SBarry Smith     if (fact <= 1.0) fact = 1.39;
2364273d9f13SBarry Smith     ierr = MatMPIBAIJSetHashTableFactor(B,fact);CHKERRQ(ierr);
236563ba0a88SBarry Smith     ierr = PetscLogInfo((0,"MatCreateMPIBAIJ:Hash table Factor used %5.2f\n",fact));CHKERRQ(ierr);
2366273d9f13SBarry Smith   }
2367273d9f13SBarry Smith   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatStoreValues_C",
2368273d9f13SBarry Smith                                      "MatStoreValues_MPIBAIJ",
2369273d9f13SBarry Smith                                      MatStoreValues_MPIBAIJ);CHKERRQ(ierr);
2370273d9f13SBarry Smith   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatRetrieveValues_C",
2371273d9f13SBarry Smith                                      "MatRetrieveValues_MPIBAIJ",
2372273d9f13SBarry Smith                                      MatRetrieveValues_MPIBAIJ);CHKERRQ(ierr);
2373273d9f13SBarry Smith   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetDiagonalBlock_C",
2374273d9f13SBarry Smith                                      "MatGetDiagonalBlock_MPIBAIJ",
2375273d9f13SBarry Smith                                      MatGetDiagonalBlock_MPIBAIJ);CHKERRQ(ierr);
2376a23d5eceSKris Buschelman   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatMPIBAIJSetPreallocation_C",
2377a23d5eceSKris Buschelman                                      "MatMPIBAIJSetPreallocation_MPIBAIJ",
2378a23d5eceSKris Buschelman                                      MatMPIBAIJSetPreallocation_MPIBAIJ);CHKERRQ(ierr);
2379aac34f13SBarry Smith   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatMPIBAIJSetPreallocationCSR_C",
2380aac34f13SBarry Smith 				     "MatMPIBAIJSetPreallocationCSR_MPIAIJ",
2381aac34f13SBarry Smith 				     MatMPIBAIJSetPreallocationCSR_MPIBAIJ);CHKERRQ(ierr);
238292b32695SKris Buschelman   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatDiagonalScaleLocal_C",
238392b32695SKris Buschelman                                      "MatDiagonalScaleLocal_MPIBAIJ",
238492b32695SKris Buschelman                                      MatDiagonalScaleLocal_MPIBAIJ);CHKERRQ(ierr);
23855bf65638SKris Buschelman   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatSetHashTableFactor_C",
23865bf65638SKris Buschelman                                      "MatSetHashTableFactor_MPIBAIJ",
23875bf65638SKris Buschelman                                      MatSetHashTableFactor_MPIBAIJ);CHKERRQ(ierr);
2388273d9f13SBarry Smith   PetscFunctionReturn(0);
2389273d9f13SBarry Smith }
2390273d9f13SBarry Smith EXTERN_C_END
2391273d9f13SBarry Smith 
2392209238afSKris Buschelman /*MC
2393002d173eSKris Buschelman    MATBAIJ - MATBAIJ = "baij" - A matrix type to be used for block sparse matrices.
2394209238afSKris Buschelman 
2395209238afSKris Buschelman    This matrix type is identical to MATSEQBAIJ when constructed with a single process communicator,
2396209238afSKris Buschelman    and MATMPIBAIJ otherwise.
2397209238afSKris Buschelman 
2398209238afSKris Buschelman    Options Database Keys:
2399209238afSKris Buschelman . -mat_type baij - sets the matrix type to "baij" during a call to MatSetFromOptions()
2400209238afSKris Buschelman 
2401209238afSKris Buschelman   Level: beginner
2402209238afSKris Buschelman 
2403aac34f13SBarry Smith .seealso: MatCreateMPIBAIJ(),MATSEQBAIJ,MATMPIBAIJ, MatMPIBAIJSetPreallocation(), MatMPIBAIJSetPreallocationCSR()
2404209238afSKris Buschelman M*/
2405209238afSKris Buschelman 
2406209238afSKris Buschelman EXTERN_C_BEGIN
2407209238afSKris Buschelman #undef __FUNCT__
2408209238afSKris Buschelman #define __FUNCT__ "MatCreate_BAIJ"
2409dfbe8321SBarry Smith PetscErrorCode MatCreate_BAIJ(Mat A)
2410dfbe8321SBarry Smith {
24116849ba73SBarry Smith   PetscErrorCode ierr;
2412b24ad042SBarry Smith   PetscMPIInt    size;
2413209238afSKris Buschelman 
2414209238afSKris Buschelman   PetscFunctionBegin;
2415209238afSKris Buschelman   ierr = PetscObjectChangeTypeName((PetscObject)A,MATBAIJ);CHKERRQ(ierr);
2416209238afSKris Buschelman   ierr = MPI_Comm_size(A->comm,&size);CHKERRQ(ierr);
2417209238afSKris Buschelman   if (size == 1) {
2418209238afSKris Buschelman     ierr = MatSetType(A,MATSEQBAIJ);CHKERRQ(ierr);
2419209238afSKris Buschelman   } else {
2420209238afSKris Buschelman     ierr = MatSetType(A,MATMPIBAIJ);CHKERRQ(ierr);
2421209238afSKris Buschelman   }
2422209238afSKris Buschelman   PetscFunctionReturn(0);
2423209238afSKris Buschelman }
2424209238afSKris Buschelman EXTERN_C_END
2425209238afSKris Buschelman 
24264a2ae208SSatish Balay #undef __FUNCT__
24274a2ae208SSatish Balay #define __FUNCT__ "MatMPIBAIJSetPreallocation"
2428273d9f13SBarry Smith /*@C
2429aac34f13SBarry Smith    MatMPIBAIJSetPreallocation - Allocates memory for a sparse parallel matrix in block AIJ format
2430273d9f13SBarry Smith    (block compressed row).  For good matrix assembly performance
2431273d9f13SBarry Smith    the user should preallocate the matrix storage by setting the parameters
2432273d9f13SBarry Smith    d_nz (or d_nnz) and o_nz (or o_nnz).  By setting these parameters accurately,
2433273d9f13SBarry Smith    performance can be increased by more than a factor of 50.
2434273d9f13SBarry Smith 
2435273d9f13SBarry Smith    Collective on Mat
2436273d9f13SBarry Smith 
2437273d9f13SBarry Smith    Input Parameters:
2438273d9f13SBarry Smith +  A - the matrix
2439273d9f13SBarry Smith .  bs   - size of blockk
2440273d9f13SBarry Smith .  d_nz  - number of block nonzeros per block row in diagonal portion of local
2441273d9f13SBarry Smith            submatrix  (same for all local rows)
2442273d9f13SBarry Smith .  d_nnz - array containing the number of block nonzeros in the various block rows
2443273d9f13SBarry Smith            of the in diagonal portion of the local (possibly different for each block
2444273d9f13SBarry Smith            row) or PETSC_NULL.  You must leave room for the diagonal entry even if it is zero.
2445273d9f13SBarry Smith .  o_nz  - number of block nonzeros per block row in the off-diagonal portion of local
2446273d9f13SBarry Smith            submatrix (same for all local rows).
2447273d9f13SBarry Smith -  o_nnz - array containing the number of nonzeros in the various block rows of the
2448273d9f13SBarry Smith            off-diagonal portion of the local submatrix (possibly different for
2449273d9f13SBarry Smith            each block row) or PETSC_NULL.
2450273d9f13SBarry Smith 
245149a6f317SBarry Smith    If the *_nnz parameter is given then the *_nz parameter is ignored
2452273d9f13SBarry Smith 
2453273d9f13SBarry Smith    Options Database Keys:
2454273d9f13SBarry Smith .   -mat_no_unroll - uses code that does not unroll the loops in the
2455273d9f13SBarry Smith                      block calculations (much slower)
2456273d9f13SBarry Smith .   -mat_block_size - size of the blocks to use
2457273d9f13SBarry Smith 
2458273d9f13SBarry Smith    Notes:
2459273d9f13SBarry Smith    If PETSC_DECIDE or  PETSC_DETERMINE is used for a particular argument on one processor
2460273d9f13SBarry Smith    than it must be used on all processors that share the object for that argument.
2461273d9f13SBarry Smith 
2462273d9f13SBarry Smith    Storage Information:
2463273d9f13SBarry Smith    For a square global matrix we define each processor's diagonal portion
2464273d9f13SBarry Smith    to be its local rows and the corresponding columns (a square submatrix);
2465273d9f13SBarry Smith    each processor's off-diagonal portion encompasses the remainder of the
2466273d9f13SBarry Smith    local matrix (a rectangular submatrix).
2467273d9f13SBarry Smith 
2468273d9f13SBarry Smith    The user can specify preallocated storage for the diagonal part of
2469273d9f13SBarry Smith    the local submatrix with either d_nz or d_nnz (not both).  Set
2470273d9f13SBarry Smith    d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic
2471273d9f13SBarry Smith    memory allocation.  Likewise, specify preallocated storage for the
2472273d9f13SBarry Smith    off-diagonal part of the local submatrix with o_nz or o_nnz (not both).
2473273d9f13SBarry Smith 
2474273d9f13SBarry Smith    Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
2475273d9f13SBarry Smith    the figure below we depict these three local rows and all columns (0-11).
2476273d9f13SBarry Smith 
2477273d9f13SBarry Smith .vb
2478273d9f13SBarry Smith            0 1 2 3 4 5 6 7 8 9 10 11
2479273d9f13SBarry Smith           -------------------
2480273d9f13SBarry Smith    row 3  |  o o o d d d o o o o o o
2481273d9f13SBarry Smith    row 4  |  o o o d d d o o o o o o
2482273d9f13SBarry Smith    row 5  |  o o o d d d o o o o o o
2483273d9f13SBarry Smith           -------------------
2484273d9f13SBarry Smith .ve
2485273d9f13SBarry Smith 
2486273d9f13SBarry Smith    Thus, any entries in the d locations are stored in the d (diagonal)
2487273d9f13SBarry Smith    submatrix, and any entries in the o locations are stored in the
2488273d9f13SBarry Smith    o (off-diagonal) submatrix.  Note that the d and the o submatrices are
2489273d9f13SBarry Smith    stored simply in the MATSEQBAIJ format for compressed row storage.
2490273d9f13SBarry Smith 
2491273d9f13SBarry Smith    Now d_nz should indicate the number of block nonzeros per row in the d matrix,
2492273d9f13SBarry Smith    and o_nz should indicate the number of block nonzeros per row in the o matrix.
2493273d9f13SBarry Smith    In general, for PDE problems in which most nonzeros are near the diagonal,
2494273d9f13SBarry Smith    one expects d_nz >> o_nz.   For large problems you MUST preallocate memory
2495273d9f13SBarry Smith    or you will get TERRIBLE performance; see the users' manual chapter on
2496273d9f13SBarry Smith    matrices.
2497273d9f13SBarry Smith 
2498273d9f13SBarry Smith    Level: intermediate
2499273d9f13SBarry Smith 
2500273d9f13SBarry Smith .keywords: matrix, block, aij, compressed row, sparse, parallel
2501273d9f13SBarry Smith 
2502aac34f13SBarry Smith .seealso: MatCreate(), MatCreateSeqBAIJ(), MatSetValues(), MatCreateMPIBAIJ(), MatMPIBAIJSetPreallocationCSR()
2503273d9f13SBarry Smith @*/
2504b24ad042SBarry Smith PetscErrorCode MatMPIBAIJSetPreallocation(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[])
2505273d9f13SBarry Smith {
2506b24ad042SBarry Smith   PetscErrorCode ierr,(*f)(Mat,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[]);
2507273d9f13SBarry Smith 
2508273d9f13SBarry Smith   PetscFunctionBegin;
2509a23d5eceSKris Buschelman   ierr = PetscObjectQueryFunction((PetscObject)B,"MatMPIBAIJSetPreallocation_C",(void (**)(void))&f);CHKERRQ(ierr);
2510a23d5eceSKris Buschelman   if (f) {
2511a23d5eceSKris Buschelman     ierr = (*f)(B,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr);
2512273d9f13SBarry Smith   }
2513273d9f13SBarry Smith   PetscFunctionReturn(0);
2514273d9f13SBarry Smith }
2515273d9f13SBarry Smith 
25164a2ae208SSatish Balay #undef __FUNCT__
25174a2ae208SSatish Balay #define __FUNCT__ "MatCreateMPIBAIJ"
251879bdfe76SSatish Balay /*@C
251979bdfe76SSatish Balay    MatCreateMPIBAIJ - Creates a sparse parallel matrix in block AIJ format
252079bdfe76SSatish Balay    (block compressed row).  For good matrix assembly performance
252179bdfe76SSatish Balay    the user should preallocate the matrix storage by setting the parameters
252279bdfe76SSatish Balay    d_nz (or d_nnz) and o_nz (or o_nnz).  By setting these parameters accurately,
252379bdfe76SSatish Balay    performance can be increased by more than a factor of 50.
252479bdfe76SSatish Balay 
2525db81eaa0SLois Curfman McInnes    Collective on MPI_Comm
2526db81eaa0SLois Curfman McInnes 
252779bdfe76SSatish Balay    Input Parameters:
2528db81eaa0SLois Curfman McInnes +  comm - MPI communicator
252979bdfe76SSatish Balay .  bs   - size of blockk
253079bdfe76SSatish Balay .  m - number of local rows (or PETSC_DECIDE to have calculated if M is given)
253192e8d321SLois Curfman McInnes            This value should be the same as the local size used in creating the
253292e8d321SLois Curfman McInnes            y vector for the matrix-vector product y = Ax.
253392e8d321SLois Curfman McInnes .  n - number of local columns (or PETSC_DECIDE to have calculated if N is given)
253492e8d321SLois Curfman McInnes            This value should be the same as the local size used in creating the
253592e8d321SLois Curfman McInnes            x vector for the matrix-vector product y = Ax.
2536be79a94dSBarry Smith .  M - number of global rows (or PETSC_DETERMINE to have calculated if m is given)
2537be79a94dSBarry Smith .  N - number of global columns (or PETSC_DETERMINE to have calculated if n is given)
253847a75d0bSBarry Smith .  d_nz  - number of nonzero blocks per block row in diagonal portion of local
253979bdfe76SSatish Balay            submatrix  (same for all local rows)
254047a75d0bSBarry Smith .  d_nnz - array containing the number of nonzero blocks in the various block rows
254192e8d321SLois Curfman McInnes            of the in diagonal portion of the local (possibly different for each block
2542db81eaa0SLois Curfman McInnes            row) or PETSC_NULL.  You must leave room for the diagonal entry even if it is zero.
254347a75d0bSBarry Smith .  o_nz  - number of nonzero blocks per block row in the off-diagonal portion of local
254479bdfe76SSatish Balay            submatrix (same for all local rows).
254547a75d0bSBarry Smith -  o_nnz - array containing the number of nonzero blocks in the various block rows of the
254692e8d321SLois Curfman McInnes            off-diagonal portion of the local submatrix (possibly different for
254792e8d321SLois Curfman McInnes            each block row) or PETSC_NULL.
254879bdfe76SSatish Balay 
254979bdfe76SSatish Balay    Output Parameter:
255079bdfe76SSatish Balay .  A - the matrix
255179bdfe76SSatish Balay 
2552db81eaa0SLois Curfman McInnes    Options Database Keys:
2553db81eaa0SLois Curfman McInnes .   -mat_no_unroll - uses code that does not unroll the loops in the
2554db81eaa0SLois Curfman McInnes                      block calculations (much slower)
2555db81eaa0SLois Curfman McInnes .   -mat_block_size - size of the blocks to use
25563ffaccefSLois Curfman McInnes 
2557b259b22eSLois Curfman McInnes    Notes:
255849a6f317SBarry Smith    If the *_nnz parameter is given then the *_nz parameter is ignored
255949a6f317SBarry Smith 
256047a75d0bSBarry Smith    A nonzero block is any block that as 1 or more nonzeros in it
256147a75d0bSBarry Smith 
256279bdfe76SSatish Balay    The user MUST specify either the local or global matrix dimensions
256379bdfe76SSatish Balay    (possibly both).
256479bdfe76SSatish Balay 
2565be79a94dSBarry Smith    If PETSC_DECIDE or  PETSC_DETERMINE is used for a particular argument on one processor
2566be79a94dSBarry Smith    than it must be used on all processors that share the object for that argument.
2567be79a94dSBarry Smith 
256879bdfe76SSatish Balay    Storage Information:
256979bdfe76SSatish Balay    For a square global matrix we define each processor's diagonal portion
257079bdfe76SSatish Balay    to be its local rows and the corresponding columns (a square submatrix);
257179bdfe76SSatish Balay    each processor's off-diagonal portion encompasses the remainder of the
257279bdfe76SSatish Balay    local matrix (a rectangular submatrix).
257379bdfe76SSatish Balay 
257479bdfe76SSatish Balay    The user can specify preallocated storage for the diagonal part of
257579bdfe76SSatish Balay    the local submatrix with either d_nz or d_nnz (not both).  Set
257679bdfe76SSatish Balay    d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic
257779bdfe76SSatish Balay    memory allocation.  Likewise, specify preallocated storage for the
257879bdfe76SSatish Balay    off-diagonal part of the local submatrix with o_nz or o_nnz (not both).
257979bdfe76SSatish Balay 
258079bdfe76SSatish Balay    Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
258179bdfe76SSatish Balay    the figure below we depict these three local rows and all columns (0-11).
258279bdfe76SSatish Balay 
2583db81eaa0SLois Curfman McInnes .vb
2584db81eaa0SLois Curfman McInnes            0 1 2 3 4 5 6 7 8 9 10 11
2585db81eaa0SLois Curfman McInnes           -------------------
2586db81eaa0SLois Curfman McInnes    row 3  |  o o o d d d o o o o o o
2587db81eaa0SLois Curfman McInnes    row 4  |  o o o d d d o o o o o o
2588db81eaa0SLois Curfman McInnes    row 5  |  o o o d d d o o o o o o
2589db81eaa0SLois Curfman McInnes           -------------------
2590db81eaa0SLois Curfman McInnes .ve
259179bdfe76SSatish Balay 
259279bdfe76SSatish Balay    Thus, any entries in the d locations are stored in the d (diagonal)
259379bdfe76SSatish Balay    submatrix, and any entries in the o locations are stored in the
259479bdfe76SSatish Balay    o (off-diagonal) submatrix.  Note that the d and the o submatrices are
259557b952d6SSatish Balay    stored simply in the MATSEQBAIJ format for compressed row storage.
259679bdfe76SSatish Balay 
2597d64ed03dSBarry Smith    Now d_nz should indicate the number of block nonzeros per row in the d matrix,
2598d64ed03dSBarry Smith    and o_nz should indicate the number of block nonzeros per row in the o matrix.
259979bdfe76SSatish Balay    In general, for PDE problems in which most nonzeros are near the diagonal,
260092e8d321SLois Curfman McInnes    one expects d_nz >> o_nz.   For large problems you MUST preallocate memory
260192e8d321SLois Curfman McInnes    or you will get TERRIBLE performance; see the users' manual chapter on
26026da5968aSLois Curfman McInnes    matrices.
260379bdfe76SSatish Balay 
2604027ccd11SLois Curfman McInnes    Level: intermediate
2605027ccd11SLois Curfman McInnes 
260692e8d321SLois Curfman McInnes .keywords: matrix, block, aij, compressed row, sparse, parallel
260779bdfe76SSatish Balay 
2608aac34f13SBarry Smith .seealso: MatCreate(), MatCreateSeqBAIJ(), MatSetValues(), MatCreateMPIBAIJ(), MatMPIBAIJSetPreallocation(), MatMPIBAIJSetPreallocationCSR()
260979bdfe76SSatish Balay @*/
2610b24ad042SBarry Smith PetscErrorCode MatCreateMPIBAIJ(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[],Mat *A)
261179bdfe76SSatish Balay {
26126849ba73SBarry Smith   PetscErrorCode ierr;
2613b24ad042SBarry Smith   PetscMPIInt    size;
261479bdfe76SSatish Balay 
2615d64ed03dSBarry Smith   PetscFunctionBegin;
2616273d9f13SBarry Smith   ierr = MatCreate(comm,m,n,M,N,A);CHKERRQ(ierr);
2617d132466eSBarry Smith   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
2618273d9f13SBarry Smith   if (size > 1) {
2619273d9f13SBarry Smith     ierr = MatSetType(*A,MATMPIBAIJ);CHKERRQ(ierr);
2620273d9f13SBarry Smith     ierr = MatMPIBAIJSetPreallocation(*A,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr);
2621273d9f13SBarry Smith   } else {
2622273d9f13SBarry Smith     ierr = MatSetType(*A,MATSEQBAIJ);CHKERRQ(ierr);
2623273d9f13SBarry Smith     ierr = MatSeqBAIJSetPreallocation(*A,bs,d_nz,d_nnz);CHKERRQ(ierr);
26243914022bSBarry Smith   }
26253a40ed3dSBarry Smith   PetscFunctionReturn(0);
262679bdfe76SSatish Balay }
2627026e39d0SSatish Balay 
26284a2ae208SSatish Balay #undef __FUNCT__
26294a2ae208SSatish Balay #define __FUNCT__ "MatDuplicate_MPIBAIJ"
26306849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIBAIJ(Mat matin,MatDuplicateOption cpvalues,Mat *newmat)
26310ac07820SSatish Balay {
26320ac07820SSatish Balay   Mat            mat;
26330ac07820SSatish Balay   Mat_MPIBAIJ    *a,*oldmat = (Mat_MPIBAIJ*)matin->data;
2634dfbe8321SBarry Smith   PetscErrorCode ierr;
2635b24ad042SBarry Smith   PetscInt       len=0;
26360ac07820SSatish Balay 
2637d64ed03dSBarry Smith   PetscFunctionBegin;
26380ac07820SSatish Balay   *newmat       = 0;
2639273d9f13SBarry Smith   ierr = MatCreate(matin->comm,matin->m,matin->n,matin->M,matin->N,&mat);CHKERRQ(ierr);
2640be5d1d56SKris Buschelman   ierr = MatSetType(mat,matin->type_name);CHKERRQ(ierr);
26411d5dac46SHong Zhang   ierr = PetscMemcpy(mat->ops,matin->ops,sizeof(struct _MatOps));CHKERRQ(ierr);
26427fff6886SHong Zhang 
26434beb1cfeSHong Zhang   mat->factor       = matin->factor;
2644273d9f13SBarry Smith   mat->preallocated = PETSC_TRUE;
26450ac07820SSatish Balay   mat->assembled    = PETSC_TRUE;
26467fff6886SHong Zhang   mat->insertmode   = NOT_SET_VALUES;
26477fff6886SHong Zhang 
2648273d9f13SBarry Smith   a      = (Mat_MPIBAIJ*)mat->data;
2649521d7252SBarry Smith   mat->bs  = matin->bs;
26500ac07820SSatish Balay   a->bs2   = oldmat->bs2;
26510ac07820SSatish Balay   a->mbs   = oldmat->mbs;
26520ac07820SSatish Balay   a->nbs   = oldmat->nbs;
26530ac07820SSatish Balay   a->Mbs   = oldmat->Mbs;
26540ac07820SSatish Balay   a->Nbs   = oldmat->Nbs;
26550ac07820SSatish Balay 
26560ac07820SSatish Balay   a->rstart       = oldmat->rstart;
26570ac07820SSatish Balay   a->rend         = oldmat->rend;
26580ac07820SSatish Balay   a->cstart       = oldmat->cstart;
26590ac07820SSatish Balay   a->cend         = oldmat->cend;
26600ac07820SSatish Balay   a->size         = oldmat->size;
26610ac07820SSatish Balay   a->rank         = oldmat->rank;
2662aef5e8e0SSatish Balay   a->donotstash   = oldmat->donotstash;
2663aef5e8e0SSatish Balay   a->roworiented  = oldmat->roworiented;
2664aef5e8e0SSatish Balay   a->rowindices   = 0;
26650ac07820SSatish Balay   a->rowvalues    = 0;
26660ac07820SSatish Balay   a->getrowactive = PETSC_FALSE;
266730793edcSSatish Balay   a->barray       = 0;
26683123a43fSSatish Balay   a->rstart_bs    = oldmat->rstart_bs;
26693123a43fSSatish Balay   a->rend_bs      = oldmat->rend_bs;
26703123a43fSSatish Balay   a->cstart_bs    = oldmat->cstart_bs;
26713123a43fSSatish Balay   a->cend_bs      = oldmat->cend_bs;
26720ac07820SSatish Balay 
2673133cdb44SSatish Balay   /* hash table stuff */
2674133cdb44SSatish Balay   a->ht           = 0;
2675133cdb44SSatish Balay   a->hd           = 0;
2676133cdb44SSatish Balay   a->ht_size      = 0;
2677133cdb44SSatish Balay   a->ht_flag      = oldmat->ht_flag;
267825fdafccSSatish Balay   a->ht_fact      = oldmat->ht_fact;
2679133cdb44SSatish Balay   a->ht_total_ct  = 0;
2680133cdb44SSatish Balay   a->ht_insert_ct = 0;
2681133cdb44SSatish Balay 
2682b24ad042SBarry Smith   ierr = PetscMemcpy(a->rowners,oldmat->rowners,3*(a->size+2)*sizeof(PetscInt));CHKERRQ(ierr);
26838798bf22SSatish Balay   ierr = MatStashCreate_Private(matin->comm,1,&mat->stash);CHKERRQ(ierr);
2684521d7252SBarry Smith   ierr = MatStashCreate_Private(matin->comm,matin->bs,&mat->bstash);CHKERRQ(ierr);
26850ac07820SSatish Balay   if (oldmat->colmap) {
2686aa482453SBarry Smith #if defined (PETSC_USE_CTABLE)
26870f5bd95cSBarry Smith   ierr = PetscTableCreateCopy(oldmat->colmap,&a->colmap);CHKERRQ(ierr);
268848e59246SSatish Balay #else
2689b24ad042SBarry Smith   ierr = PetscMalloc((a->Nbs)*sizeof(PetscInt),&a->colmap);CHKERRQ(ierr);
269052e6d16bSBarry Smith   ierr = PetscLogObjectMemory(mat,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr);
2691b24ad042SBarry Smith   ierr = PetscMemcpy(a->colmap,oldmat->colmap,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr);
269248e59246SSatish Balay #endif
26930ac07820SSatish Balay   } else a->colmap = 0;
26944beb1cfeSHong Zhang 
26950ac07820SSatish Balay   if (oldmat->garray && (len = ((Mat_SeqBAIJ*)(oldmat->B->data))->nbs)) {
2696b24ad042SBarry Smith     ierr = PetscMalloc(len*sizeof(PetscInt),&a->garray);CHKERRQ(ierr);
269752e6d16bSBarry Smith     ierr = PetscLogObjectMemory(mat,len*sizeof(PetscInt));CHKERRQ(ierr);
2698b24ad042SBarry Smith     ierr = PetscMemcpy(a->garray,oldmat->garray,len*sizeof(PetscInt));CHKERRQ(ierr);
26990ac07820SSatish Balay   } else a->garray = 0;
27000ac07820SSatish Balay 
27010ac07820SSatish Balay   ierr =  VecDuplicate(oldmat->lvec,&a->lvec);CHKERRQ(ierr);
270252e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->lvec);CHKERRQ(ierr);
27030ac07820SSatish Balay   ierr =  VecScatterCopy(oldmat->Mvctx,&a->Mvctx);CHKERRQ(ierr);
270452e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->Mvctx);CHKERRQ(ierr);
27057fff6886SHong Zhang 
27062e8a6d31SBarry Smith   ierr =  MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr);
270752e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->A);CHKERRQ(ierr);
27082e8a6d31SBarry Smith   ierr =  MatDuplicate(oldmat->B,cpvalues,&a->B);CHKERRQ(ierr);
270952e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->B);CHKERRQ(ierr);
2710b0a32e0cSBarry Smith   ierr = PetscFListDuplicate(matin->qlist,&mat->qlist);CHKERRQ(ierr);
27110ac07820SSatish Balay   *newmat = mat;
27124beb1cfeSHong Zhang 
27133a40ed3dSBarry Smith   PetscFunctionReturn(0);
27140ac07820SSatish Balay }
271557b952d6SSatish Balay 
2716e090d566SSatish Balay #include "petscsys.h"
271757b952d6SSatish Balay 
27184a2ae208SSatish Balay #undef __FUNCT__
27194a2ae208SSatish Balay #define __FUNCT__ "MatLoad_MPIBAIJ"
2720dfbe8321SBarry Smith PetscErrorCode MatLoad_MPIBAIJ(PetscViewer viewer,const MatType type,Mat *newmat)
272157b952d6SSatish Balay {
272257b952d6SSatish Balay   Mat            A;
27236849ba73SBarry Smith   PetscErrorCode ierr;
2724b24ad042SBarry Smith   int            fd;
2725b24ad042SBarry Smith   PetscInt       i,nz,j,rstart,rend;
272687828ca2SBarry Smith   PetscScalar    *vals,*buf;
272757b952d6SSatish Balay   MPI_Comm       comm = ((PetscObject)viewer)->comm;
272857b952d6SSatish Balay   MPI_Status     status;
2729b24ad042SBarry Smith   PetscMPIInt    rank,size,maxnz;
2730b24ad042SBarry Smith   PetscInt       header[4],*rowlengths = 0,M,N,m,*rowners,*cols;
2731dc231df0SBarry Smith   PetscInt       *locrowlens,*procsnz = 0,*browners;
2732167e7480SBarry Smith   PetscInt       jj,*mycols,*ibuf,bs=1,Mbs,mbs,extra_rows,mmax;
2733dc231df0SBarry Smith   PetscMPIInt    tag = ((PetscObject)viewer)->tag;
2734b24ad042SBarry Smith   PetscInt       *dlens,*odlens,*mask,*masked1,*masked2,rowcount,odcount;
2735dc231df0SBarry Smith   PetscInt       dcount,kmax,k,nzcount,tmp,mend;
273657b952d6SSatish Balay 
2737d64ed03dSBarry Smith   PetscFunctionBegin;
2738b0a32e0cSBarry Smith   ierr = PetscOptionsGetInt(PETSC_NULL,"-matload_block_size",&bs,PETSC_NULL);CHKERRQ(ierr);
273957b952d6SSatish Balay 
2740d132466eSBarry Smith   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
2741d132466eSBarry Smith   ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr);
274257b952d6SSatish Balay   if (!rank) {
2743b0a32e0cSBarry Smith     ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr);
2744e5638eb3SBarry Smith     ierr = PetscBinaryRead(fd,(char *)header,4,PETSC_INT);CHKERRQ(ierr);
2745552e946dSBarry Smith     if (header[0] != MAT_FILE_COOKIE) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"not matrix object");
27466c5fab8fSBarry Smith   }
2747d64ed03dSBarry Smith 
2748b24ad042SBarry Smith   ierr = MPI_Bcast(header+1,3,MPIU_INT,0,comm);CHKERRQ(ierr);
274957b952d6SSatish Balay   M = header[1]; N = header[2];
275057b952d6SSatish Balay 
275129bbc08cSBarry Smith   if (M != N) SETERRQ(PETSC_ERR_SUP,"Can only do square matrices");
275257b952d6SSatish Balay 
275357b952d6SSatish Balay   /*
275457b952d6SSatish Balay      This code adds extra rows to make sure the number of rows is
275557b952d6SSatish Balay      divisible by the blocksize
275657b952d6SSatish Balay   */
275757b952d6SSatish Balay   Mbs        = M/bs;
2758dc231df0SBarry Smith   extra_rows = bs - M + bs*Mbs;
275957b952d6SSatish Balay   if (extra_rows == bs) extra_rows = 0;
276057b952d6SSatish Balay   else                  Mbs++;
276157b952d6SSatish Balay   if (extra_rows && !rank) {
276263ba0a88SBarry Smith     ierr = PetscLogInfo((0,"MatLoad_MPIBAIJ:Padding loaded matrix to match blocksize\n"));CHKERRQ(ierr);
276357b952d6SSatish Balay   }
2764537820f0SBarry Smith 
276557b952d6SSatish Balay   /* determine ownership of all rows */
276657b952d6SSatish Balay   mbs        = Mbs/size + ((Mbs % size) > rank);
276757b952d6SSatish Balay   m          = mbs*bs;
2768dc231df0SBarry Smith   ierr       = PetscMalloc2(size+1,PetscInt,&rowners,size+1,PetscInt,&browners);CHKERRQ(ierr);
2769b24ad042SBarry Smith   ierr       = MPI_Allgather(&mbs,1,MPIU_INT,rowners+1,1,MPIU_INT,comm);CHKERRQ(ierr);
2770167e7480SBarry Smith 
2771167e7480SBarry Smith   /* process 0 needs enough room for process with most rows */
2772167e7480SBarry Smith   if (!rank) {
2773167e7480SBarry Smith     mmax = rowners[1];
2774167e7480SBarry Smith     for (i=2; i<size; i++) {
2775167e7480SBarry Smith       mmax = PetscMax(mmax,rowners[i]);
2776167e7480SBarry Smith     }
2777ca02efcfSSatish Balay     mmax*=bs;
2778167e7480SBarry Smith   } else mmax = m;
2779167e7480SBarry Smith 
278057b952d6SSatish Balay   rowners[0] = 0;
2781cee3aa6bSSatish Balay   for (i=2; i<=size; i++)  rowners[i] += rowners[i-1];
2782cee3aa6bSSatish Balay   for (i=0; i<=size;  i++) browners[i] = rowners[i]*bs;
278357b952d6SSatish Balay   rstart = rowners[rank];
278457b952d6SSatish Balay   rend   = rowners[rank+1];
278557b952d6SSatish Balay 
278657b952d6SSatish Balay   /* distribute row lengths to all processors */
278719c38ff2SBarry Smith   ierr = PetscMalloc((mmax+1)*sizeof(PetscInt),&locrowlens);CHKERRQ(ierr);
278857b952d6SSatish Balay   if (!rank) {
2789dc231df0SBarry Smith     mend = m;
2790dc231df0SBarry Smith     if (size == 1) mend = mend - extra_rows;
2791dc231df0SBarry Smith     ierr = PetscBinaryRead(fd,locrowlens,mend,PETSC_INT);CHKERRQ(ierr);
2792dc231df0SBarry Smith     for (j=mend; j<m; j++) locrowlens[j] = 1;
2793dc231df0SBarry Smith     ierr = PetscMalloc(m*sizeof(PetscInt),&rowlengths);CHKERRQ(ierr);
2794b24ad042SBarry Smith     ierr = PetscMalloc(size*sizeof(PetscInt),&procsnz);CHKERRQ(ierr);
2795b24ad042SBarry Smith     ierr = PetscMemzero(procsnz,size*sizeof(PetscInt));CHKERRQ(ierr);
2796dc231df0SBarry Smith     for (j=0; j<m; j++) {
2797dc231df0SBarry Smith       procsnz[0] += locrowlens[j];
2798dc231df0SBarry Smith     }
2799dc231df0SBarry Smith     for (i=1; i<size; i++) {
2800dc231df0SBarry Smith       mend = browners[i+1] - browners[i];
2801dc231df0SBarry Smith       if (i == size-1) mend = mend - extra_rows;
2802dc231df0SBarry Smith       ierr = PetscBinaryRead(fd,rowlengths,mend,PETSC_INT);CHKERRQ(ierr);
2803dc231df0SBarry Smith       for (j=mend; j<browners[i+1] - browners[i]; j++) rowlengths[j] = 1;
2804dc231df0SBarry Smith       /* calculate the number of nonzeros on each processor */
2805dc231df0SBarry Smith       for (j=0; j<browners[i+1]-browners[i]; j++) {
280657b952d6SSatish Balay         procsnz[i] += rowlengths[j];
280757b952d6SSatish Balay       }
2808dc231df0SBarry Smith       ierr = MPI_Send(rowlengths,browners[i+1]-browners[i],MPIU_INT,i,tag,comm);CHKERRQ(ierr);
280957b952d6SSatish Balay     }
2810606d414cSSatish Balay     ierr = PetscFree(rowlengths);CHKERRQ(ierr);
2811dc231df0SBarry Smith   } else {
2812dc231df0SBarry Smith     ierr = MPI_Recv(locrowlens,m,MPIU_INT,0,tag,comm,&status);CHKERRQ(ierr);
2813dc231df0SBarry Smith   }
281457b952d6SSatish Balay 
2815dc231df0SBarry Smith   if (!rank) {
281657b952d6SSatish Balay     /* determine max buffer needed and allocate it */
28178a8e0b3aSBarry Smith     maxnz = procsnz[0];
2818cdc0ba36SBarry Smith     for (i=1; i<size; i++) {
281957b952d6SSatish Balay       maxnz = PetscMax(maxnz,procsnz[i]);
282057b952d6SSatish Balay     }
2821b24ad042SBarry Smith     ierr = PetscMalloc(maxnz*sizeof(PetscInt),&cols);CHKERRQ(ierr);
282257b952d6SSatish Balay 
282357b952d6SSatish Balay     /* read in my part of the matrix column indices  */
282457b952d6SSatish Balay     nz     = procsnz[0];
282519c38ff2SBarry Smith     ierr   = PetscMalloc((nz+1)*sizeof(PetscInt),&ibuf);CHKERRQ(ierr);
282657b952d6SSatish Balay     mycols = ibuf;
2827cee3aa6bSSatish Balay     if (size == 1)  nz -= extra_rows;
2828e5638eb3SBarry Smith     ierr = PetscBinaryRead(fd,mycols,nz,PETSC_INT);CHKERRQ(ierr);
2829cee3aa6bSSatish Balay     if (size == 1)  for (i=0; i< extra_rows; i++) { mycols[nz+i] = M+i; }
2830cee3aa6bSSatish Balay 
283157b952d6SSatish Balay     /* read in every ones (except the last) and ship off */
283257b952d6SSatish Balay     for (i=1; i<size-1; i++) {
283357b952d6SSatish Balay       nz   = procsnz[i];
2834e5638eb3SBarry Smith       ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr);
2835b24ad042SBarry Smith       ierr = MPI_Send(cols,nz,MPIU_INT,i,tag,comm);CHKERRQ(ierr);
283657b952d6SSatish Balay     }
283757b952d6SSatish Balay     /* read in the stuff for the last proc */
283857b952d6SSatish Balay     if (size != 1) {
283957b952d6SSatish Balay       nz   = procsnz[size-1] - extra_rows;  /* the extra rows are not on the disk */
2840e5638eb3SBarry Smith       ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr);
284157b952d6SSatish Balay       for (i=0; i<extra_rows; i++) cols[nz+i] = M+i;
2842b24ad042SBarry Smith       ierr = MPI_Send(cols,nz+extra_rows,MPIU_INT,size-1,tag,comm);CHKERRQ(ierr);
284357b952d6SSatish Balay     }
2844606d414cSSatish Balay     ierr = PetscFree(cols);CHKERRQ(ierr);
2845d64ed03dSBarry Smith   } else {
284657b952d6SSatish Balay     /* determine buffer space needed for message */
284757b952d6SSatish Balay     nz = 0;
284857b952d6SSatish Balay     for (i=0; i<m; i++) {
284957b952d6SSatish Balay       nz += locrowlens[i];
285057b952d6SSatish Balay     }
285119c38ff2SBarry Smith     ierr   = PetscMalloc((nz+1)*sizeof(PetscInt),&ibuf);CHKERRQ(ierr);
285257b952d6SSatish Balay     mycols = ibuf;
285357b952d6SSatish Balay     /* receive message of column indices*/
2854b24ad042SBarry Smith     ierr = MPI_Recv(mycols,nz,MPIU_INT,0,tag,comm,&status);CHKERRQ(ierr);
2855b24ad042SBarry Smith     ierr = MPI_Get_count(&status,MPIU_INT,&maxnz);CHKERRQ(ierr);
285629bbc08cSBarry Smith     if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file");
285757b952d6SSatish Balay   }
285857b952d6SSatish Balay 
285957b952d6SSatish Balay   /* loop over local rows, determining number of off diagonal entries */
2860dc231df0SBarry Smith   ierr     = PetscMalloc2(rend-rstart,PetscInt,&dlens,rend-rstart,PetscInt,&odlens);CHKERRQ(ierr);
2861dc231df0SBarry Smith   ierr     = PetscMalloc3(Mbs,PetscInt,&mask,Mbs,PetscInt,&masked1,Mbs,PetscInt,&masked2);CHKERRQ(ierr);
2862dc231df0SBarry Smith   ierr     = PetscMemzero(mask,Mbs*sizeof(PetscInt));CHKERRQ(ierr);
2863dc231df0SBarry Smith   ierr     = PetscMemzero(masked1,Mbs*sizeof(PetscInt));CHKERRQ(ierr);
2864dc231df0SBarry Smith   ierr     = PetscMemzero(masked2,Mbs*sizeof(PetscInt));CHKERRQ(ierr);
286557b952d6SSatish Balay   rowcount = 0; nzcount = 0;
286657b952d6SSatish Balay   for (i=0; i<mbs; i++) {
286757b952d6SSatish Balay     dcount  = 0;
286857b952d6SSatish Balay     odcount = 0;
286957b952d6SSatish Balay     for (j=0; j<bs; j++) {
287057b952d6SSatish Balay       kmax = locrowlens[rowcount];
287157b952d6SSatish Balay       for (k=0; k<kmax; k++) {
287257b952d6SSatish Balay         tmp = mycols[nzcount++]/bs;
287357b952d6SSatish Balay         if (!mask[tmp]) {
287457b952d6SSatish Balay           mask[tmp] = 1;
287557b952d6SSatish Balay           if (tmp < rstart || tmp >= rend) masked2[odcount++] = tmp;
287657b952d6SSatish Balay           else masked1[dcount++] = tmp;
287757b952d6SSatish Balay         }
287857b952d6SSatish Balay       }
287957b952d6SSatish Balay       rowcount++;
288057b952d6SSatish Balay     }
2881cee3aa6bSSatish Balay 
288257b952d6SSatish Balay     dlens[i]  = dcount;
288357b952d6SSatish Balay     odlens[i] = odcount;
2884cee3aa6bSSatish Balay 
288557b952d6SSatish Balay     /* zero out the mask elements we set */
288657b952d6SSatish Balay     for (j=0; j<dcount; j++) mask[masked1[j]] = 0;
288757b952d6SSatish Balay     for (j=0; j<odcount; j++) mask[masked2[j]] = 0;
288857b952d6SSatish Balay   }
2889cee3aa6bSSatish Balay 
289057b952d6SSatish Balay   /* create our matrix */
289178ae41b4SKris Buschelman   ierr = MatCreate(comm,m,m,M+extra_rows,N+extra_rows,&A);CHKERRQ(ierr);
289278ae41b4SKris Buschelman   ierr = MatSetType(A,type);CHKERRQ(ierr)
289378ae41b4SKris Buschelman   ierr = MatMPIBAIJSetPreallocation(A,bs,0,dlens,0,odlens);CHKERRQ(ierr);
289478ae41b4SKris Buschelman 
289578ae41b4SKris Buschelman   /* Why doesn't this called using ierr = MatSetOption(A,MAT_COLUMNS_SORTED);CHKERRQ(ierr); */
2896dc231df0SBarry Smith   ierr = MatSetOption(A,MAT_COLUMNS_SORTED);CHKERRQ(ierr);
289757b952d6SSatish Balay 
289857b952d6SSatish Balay   if (!rank) {
289919c38ff2SBarry Smith     ierr = PetscMalloc((maxnz+1)*sizeof(PetscScalar),&buf);CHKERRQ(ierr);
290057b952d6SSatish Balay     /* read in my part of the matrix numerical values  */
290157b952d6SSatish Balay     nz = procsnz[0];
290257b952d6SSatish Balay     vals = buf;
2903cee3aa6bSSatish Balay     mycols = ibuf;
2904cee3aa6bSSatish Balay     if (size == 1)  nz -= extra_rows;
2905e5638eb3SBarry Smith     ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
2906cee3aa6bSSatish Balay     if (size == 1)  for (i=0; i< extra_rows; i++) { vals[nz+i] = 1.0; }
2907537820f0SBarry Smith 
290857b952d6SSatish Balay     /* insert into matrix */
290957b952d6SSatish Balay     jj      = rstart*bs;
291057b952d6SSatish Balay     for (i=0; i<m; i++) {
2911dc231df0SBarry Smith       ierr = MatSetValues_MPIBAIJ(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr);
291257b952d6SSatish Balay       mycols += locrowlens[i];
291357b952d6SSatish Balay       vals   += locrowlens[i];
291457b952d6SSatish Balay       jj++;
291557b952d6SSatish Balay     }
291657b952d6SSatish Balay     /* read in other processors (except the last one) and ship out */
291757b952d6SSatish Balay     for (i=1; i<size-1; i++) {
291857b952d6SSatish Balay       nz   = procsnz[i];
291957b952d6SSatish Balay       vals = buf;
2920e5638eb3SBarry Smith       ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
2921ca161407SBarry Smith       ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,A->tag,comm);CHKERRQ(ierr);
292257b952d6SSatish Balay     }
292357b952d6SSatish Balay     /* the last proc */
292457b952d6SSatish Balay     if (size != 1){
292557b952d6SSatish Balay       nz   = procsnz[i] - extra_rows;
2926cee3aa6bSSatish Balay       vals = buf;
2927e5638eb3SBarry Smith       ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
292857b952d6SSatish Balay       for (i=0; i<extra_rows; i++) vals[nz+i] = 1.0;
2929ca161407SBarry Smith       ierr = MPI_Send(vals,nz+extra_rows,MPIU_SCALAR,size-1,A->tag,comm);CHKERRQ(ierr);
293057b952d6SSatish Balay     }
2931606d414cSSatish Balay     ierr = PetscFree(procsnz);CHKERRQ(ierr);
2932d64ed03dSBarry Smith   } else {
293357b952d6SSatish Balay     /* receive numeric values */
293419c38ff2SBarry Smith     ierr = PetscMalloc((nz+1)*sizeof(PetscScalar),&buf);CHKERRQ(ierr);
293557b952d6SSatish Balay 
293657b952d6SSatish Balay     /* receive message of values*/
293757b952d6SSatish Balay     vals   = buf;
2938cee3aa6bSSatish Balay     mycols = ibuf;
2939ca161407SBarry Smith     ierr   = MPI_Recv(vals,nz,MPIU_SCALAR,0,A->tag,comm,&status);CHKERRQ(ierr);
2940ca161407SBarry Smith     ierr   = MPI_Get_count(&status,MPIU_SCALAR,&maxnz);CHKERRQ(ierr);
294129bbc08cSBarry Smith     if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file");
294257b952d6SSatish Balay 
294357b952d6SSatish Balay     /* insert into matrix */
294457b952d6SSatish Balay     jj      = rstart*bs;
2945cee3aa6bSSatish Balay     for (i=0; i<m; i++) {
2946dc231df0SBarry Smith       ierr    = MatSetValues_MPIBAIJ(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr);
294757b952d6SSatish Balay       mycols += locrowlens[i];
294857b952d6SSatish Balay       vals   += locrowlens[i];
294957b952d6SSatish Balay       jj++;
295057b952d6SSatish Balay     }
295157b952d6SSatish Balay   }
2952606d414cSSatish Balay   ierr = PetscFree(locrowlens);CHKERRQ(ierr);
2953606d414cSSatish Balay   ierr = PetscFree(buf);CHKERRQ(ierr);
2954606d414cSSatish Balay   ierr = PetscFree(ibuf);CHKERRQ(ierr);
2955dc231df0SBarry Smith   ierr = PetscFree2(rowners,browners);CHKERRQ(ierr);
2956dc231df0SBarry Smith   ierr = PetscFree2(dlens,odlens);CHKERRQ(ierr);
2957dc231df0SBarry Smith   ierr = PetscFree3(mask,masked1,masked2);CHKERRQ(ierr);
29586d4a8577SBarry Smith   ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
29596d4a8577SBarry Smith   ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
296078ae41b4SKris Buschelman 
296178ae41b4SKris Buschelman   *newmat = A;
29623a40ed3dSBarry Smith   PetscFunctionReturn(0);
296357b952d6SSatish Balay }
296457b952d6SSatish Balay 
29654a2ae208SSatish Balay #undef __FUNCT__
29664a2ae208SSatish Balay #define __FUNCT__ "MatMPIBAIJSetHashTableFactor"
2967133cdb44SSatish Balay /*@
2968133cdb44SSatish Balay    MatMPIBAIJSetHashTableFactor - Sets the factor required to compute the size of the HashTable.
2969133cdb44SSatish Balay 
2970133cdb44SSatish Balay    Input Parameters:
2971133cdb44SSatish Balay .  mat  - the matrix
2972133cdb44SSatish Balay .  fact - factor
2973133cdb44SSatish Balay 
2974fee21e36SBarry Smith    Collective on Mat
2975fee21e36SBarry Smith 
29768c890885SBarry Smith    Level: advanced
29778c890885SBarry Smith 
2978133cdb44SSatish Balay   Notes:
2979133cdb44SSatish Balay    This can also be set by the command line option: -mat_use_hash_table fact
2980133cdb44SSatish Balay 
2981133cdb44SSatish Balay .keywords: matrix, hashtable, factor, HT
2982133cdb44SSatish Balay 
2983133cdb44SSatish Balay .seealso: MatSetOption()
2984133cdb44SSatish Balay @*/
2985dfbe8321SBarry Smith PetscErrorCode MatMPIBAIJSetHashTableFactor(Mat mat,PetscReal fact)
2986133cdb44SSatish Balay {
2987dfbe8321SBarry Smith   PetscErrorCode ierr,(*f)(Mat,PetscReal);
29885bf65638SKris Buschelman 
29895bf65638SKris Buschelman   PetscFunctionBegin;
29905bf65638SKris Buschelman   ierr = PetscObjectQueryFunction((PetscObject)mat,"MatSetHashTableFactor_C",(void (**)(void))&f);CHKERRQ(ierr);
29915bf65638SKris Buschelman   if (f) {
29925bf65638SKris Buschelman     ierr = (*f)(mat,fact);CHKERRQ(ierr);
29935bf65638SKris Buschelman   }
29945bf65638SKris Buschelman   PetscFunctionReturn(0);
29955bf65638SKris Buschelman }
29965bf65638SKris Buschelman 
29975bf65638SKris Buschelman #undef __FUNCT__
29985bf65638SKris Buschelman #define __FUNCT__ "MatSetHashTableFactor_MPIBAIJ"
2999dfbe8321SBarry Smith PetscErrorCode MatSetHashTableFactor_MPIBAIJ(Mat mat,PetscReal fact)
30005bf65638SKris Buschelman {
300125fdafccSSatish Balay   Mat_MPIBAIJ *baij;
3002133cdb44SSatish Balay 
3003133cdb44SSatish Balay   PetscFunctionBegin;
3004133cdb44SSatish Balay   baij = (Mat_MPIBAIJ*)mat->data;
3005133cdb44SSatish Balay   baij->ht_fact = fact;
3006133cdb44SSatish Balay   PetscFunctionReturn(0);
3007133cdb44SSatish Balay }
3008f2a5309cSSatish Balay 
30094a2ae208SSatish Balay #undef __FUNCT__
30104a2ae208SSatish Balay #define __FUNCT__ "MatMPIBAIJGetSeqBAIJ"
3011b24ad042SBarry Smith PetscErrorCode MatMPIBAIJGetSeqBAIJ(Mat A,Mat *Ad,Mat *Ao,PetscInt *colmap[])
3012f2a5309cSSatish Balay {
3013f2a5309cSSatish Balay   Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data;
3014f2a5309cSSatish Balay   PetscFunctionBegin;
3015f2a5309cSSatish Balay   *Ad     = a->A;
3016f2a5309cSSatish Balay   *Ao     = a->B;
3017195d93cdSBarry Smith   *colmap = a->garray;
3018f2a5309cSSatish Balay   PetscFunctionReturn(0);
3019f2a5309cSSatish Balay }
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