1c6db04a5SJed Brown #include <../src/mat/impls/baij/mpi/mpibaij.h> /*I "petscmat.h" I*/ 2c5d9258eSSatish Balay 3b51a4376SLisandro Dalcin #include <petsc/private/hashseti.h> 4c6db04a5SJed Brown #include <petscblaslapack.h> 565a92638SMatthew G. Knepley #include <petscsf.h> 679bdfe76SSatish Balay 766976f2fSJacob Faibussowitsch static PetscErrorCode MatDestroy_MPIBAIJ(Mat mat) 826cec326SBarry Smith { 926cec326SBarry Smith Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 1026cec326SBarry Smith 1126cec326SBarry Smith PetscFunctionBegin; 1226cec326SBarry Smith PetscCall(PetscLogObjectState((PetscObject)mat, "Rows=%" PetscInt_FMT ",Cols=%" PetscInt_FMT, mat->rmap->N, mat->cmap->N)); 1326cec326SBarry Smith PetscCall(MatStashDestroy_Private(&mat->stash)); 1426cec326SBarry Smith PetscCall(MatStashDestroy_Private(&mat->bstash)); 1526cec326SBarry Smith PetscCall(MatDestroy(&baij->A)); 1626cec326SBarry Smith PetscCall(MatDestroy(&baij->B)); 1726cec326SBarry Smith #if defined(PETSC_USE_CTABLE) 1826cec326SBarry Smith PetscCall(PetscHMapIDestroy(&baij->colmap)); 1926cec326SBarry Smith #else 2026cec326SBarry Smith PetscCall(PetscFree(baij->colmap)); 2126cec326SBarry Smith #endif 2226cec326SBarry Smith PetscCall(PetscFree(baij->garray)); 2326cec326SBarry Smith PetscCall(VecDestroy(&baij->lvec)); 2426cec326SBarry Smith PetscCall(VecScatterDestroy(&baij->Mvctx)); 2526cec326SBarry Smith PetscCall(PetscFree2(baij->rowvalues, baij->rowindices)); 2626cec326SBarry Smith PetscCall(PetscFree(baij->barray)); 2726cec326SBarry Smith PetscCall(PetscFree2(baij->hd, baij->ht)); 2826cec326SBarry Smith PetscCall(PetscFree(baij->rangebs)); 2926cec326SBarry Smith PetscCall(PetscFree(mat->data)); 3026cec326SBarry Smith 3126cec326SBarry Smith PetscCall(PetscObjectChangeTypeName((PetscObject)mat, NULL)); 3226cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatStoreValues_C", NULL)); 3326cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatRetrieveValues_C", NULL)); 3426cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMPIBAIJSetPreallocation_C", NULL)); 3526cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMPIBAIJSetPreallocationCSR_C", NULL)); 3626cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDiagonalScaleLocal_C", NULL)); 3726cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatSetHashTableFactor_C", NULL)); 3826cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpibaij_mpisbaij_C", NULL)); 3926cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpibaij_mpiadj_C", NULL)); 4026cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpibaij_mpiaij_C", NULL)); 4126cec326SBarry Smith #if defined(PETSC_HAVE_HYPRE) 4226cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpibaij_hypre_C", NULL)); 4326cec326SBarry Smith #endif 4426cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpibaij_is_C", NULL)); 4526cec326SBarry Smith PetscFunctionReturn(PETSC_SUCCESS); 4626cec326SBarry Smith } 4726cec326SBarry Smith 4826cec326SBarry Smith /* defines MatSetValues_MPI_Hash(), MatAssemblyBegin_MPI_Hash(), and MatAssemblyEnd_MPI_Hash() */ 4926cec326SBarry Smith #define TYPE BAIJ 5026cec326SBarry Smith #include "../src/mat/impls/aij/mpi/mpihashmat.h" 5126cec326SBarry Smith #undef TYPE 5226cec326SBarry Smith 537ea3e4caSstefano_zampini #if defined(PETSC_HAVE_HYPRE) 547ea3e4caSstefano_zampini PETSC_INTERN PetscErrorCode MatConvert_AIJ_HYPRE(Mat, MatType, MatReuse, Mat *); 557ea3e4caSstefano_zampini #endif 567ea3e4caSstefano_zampini 5766976f2fSJacob Faibussowitsch static PetscErrorCode MatGetRowMaxAbs_MPIBAIJ(Mat A, Vec v, PetscInt idx[]) 58d71ae5a4SJacob Faibussowitsch { 597843d17aSBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 604e879edeSHong Zhang PetscInt i, *idxb = NULL, m = A->rmap->n, bs = A->cmap->bs; 61db161fc6SPierre Jolivet PetscScalar *vv; 624e879edeSHong Zhang Vec vB, vA; 63db161fc6SPierre Jolivet const PetscScalar *va, *vb; 647843d17aSBarry Smith 657843d17aSBarry Smith PetscFunctionBegin; 66c7b600bfSPierre Jolivet PetscCall(MatCreateVecs(a->A, NULL, &vA)); 679566063dSJacob Faibussowitsch PetscCall(MatGetRowMaxAbs(a->A, vA, idx)); 684e879edeSHong Zhang 69db161fc6SPierre Jolivet PetscCall(VecGetArrayRead(vA, &va)); 70985db425SBarry Smith if (idx) { 714e879edeSHong Zhang for (i = 0; i < m; i++) { 7226fbe8dcSKarl Rupp if (PetscAbsScalar(va[i])) idx[i] += A->cmap->rstart; 7326fbe8dcSKarl Rupp } 74985db425SBarry Smith } 757843d17aSBarry Smith 76c7b600bfSPierre Jolivet PetscCall(MatCreateVecs(a->B, NULL, &vB)); 779566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m, &idxb)); 789566063dSJacob Faibussowitsch PetscCall(MatGetRowMaxAbs(a->B, vB, idxb)); 797843d17aSBarry Smith 809566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(v, &vv)); 819566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(vB, &vb)); 824e879edeSHong Zhang for (i = 0; i < m; i++) { 8326fbe8dcSKarl Rupp if (PetscAbsScalar(va[i]) < PetscAbsScalar(vb[i])) { 844e879edeSHong Zhang vv[i] = vb[i]; 854e879edeSHong Zhang if (idx) idx[i] = bs * a->garray[idxb[i] / bs] + (idxb[i] % bs); 864e879edeSHong Zhang } else { 874e879edeSHong Zhang vv[i] = va[i]; 889371c9d4SSatish Balay if (idx && PetscAbsScalar(va[i]) == PetscAbsScalar(vb[i]) && idxb[i] != -1 && idx[i] > bs * a->garray[idxb[i] / bs] + (idxb[i] % bs)) idx[i] = bs * a->garray[idxb[i] / bs] + (idxb[i] % bs); 8926fbe8dcSKarl Rupp } 907843d17aSBarry Smith } 91db161fc6SPierre Jolivet PetscCall(VecRestoreArrayWrite(v, &vv)); 92db161fc6SPierre Jolivet PetscCall(VecRestoreArrayRead(vA, &va)); 939566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(vB, &vb)); 949566063dSJacob Faibussowitsch PetscCall(PetscFree(idxb)); 959566063dSJacob Faibussowitsch PetscCall(VecDestroy(&vA)); 969566063dSJacob Faibussowitsch PetscCall(VecDestroy(&vB)); 973ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 987843d17aSBarry Smith } 997843d17aSBarry Smith 100c7b600bfSPierre Jolivet static PetscErrorCode MatGetRowSumAbs_MPIBAIJ(Mat A, Vec v) 101c7b600bfSPierre Jolivet { 102c7b600bfSPierre Jolivet Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 103c7b600bfSPierre Jolivet Vec vB, vA; 104c7b600bfSPierre Jolivet 105c7b600bfSPierre Jolivet PetscFunctionBegin; 106c7b600bfSPierre Jolivet PetscCall(MatCreateVecs(a->A, NULL, &vA)); 107c7b600bfSPierre Jolivet PetscCall(MatGetRowSumAbs(a->A, vA)); 108c7b600bfSPierre Jolivet PetscCall(MatCreateVecs(a->B, NULL, &vB)); 109c7b600bfSPierre Jolivet PetscCall(MatGetRowSumAbs(a->B, vB)); 110c7b600bfSPierre Jolivet PetscCall(VecAXPY(vA, 1.0, vB)); 111c7b600bfSPierre Jolivet PetscCall(VecDestroy(&vB)); 112c7b600bfSPierre Jolivet PetscCall(VecCopy(vA, v)); 113c7b600bfSPierre Jolivet PetscCall(VecDestroy(&vA)); 114c7b600bfSPierre Jolivet PetscFunctionReturn(PETSC_SUCCESS); 115c7b600bfSPierre Jolivet } 116c7b600bfSPierre Jolivet 11766976f2fSJacob Faibussowitsch static PetscErrorCode MatStoreValues_MPIBAIJ(Mat mat) 118d71ae5a4SJacob Faibussowitsch { 1197fc3c18eSBarry Smith Mat_MPIBAIJ *aij = (Mat_MPIBAIJ *)mat->data; 1207fc3c18eSBarry Smith 1217fc3c18eSBarry Smith PetscFunctionBegin; 1229566063dSJacob Faibussowitsch PetscCall(MatStoreValues(aij->A)); 1239566063dSJacob Faibussowitsch PetscCall(MatStoreValues(aij->B)); 1243ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1257fc3c18eSBarry Smith } 1267fc3c18eSBarry Smith 12766976f2fSJacob Faibussowitsch static PetscErrorCode MatRetrieveValues_MPIBAIJ(Mat mat) 128d71ae5a4SJacob Faibussowitsch { 1297fc3c18eSBarry Smith Mat_MPIBAIJ *aij = (Mat_MPIBAIJ *)mat->data; 1307fc3c18eSBarry Smith 1317fc3c18eSBarry Smith PetscFunctionBegin; 1329566063dSJacob Faibussowitsch PetscCall(MatRetrieveValues(aij->A)); 1339566063dSJacob Faibussowitsch PetscCall(MatRetrieveValues(aij->B)); 1343ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1357fc3c18eSBarry Smith } 1367fc3c18eSBarry Smith 137537820f0SBarry Smith /* 138537820f0SBarry Smith Local utility routine that creates a mapping from the global column 13957b952d6SSatish Balay number to the local number in the off-diagonal part of the local 140e06f6af7SJed Brown storage of the matrix. This is done in a non scalable way since the 14157b952d6SSatish Balay length of colmap equals the global matrix length. 14257b952d6SSatish Balay */ 143d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateColmap_MPIBAIJ_Private(Mat mat) 144d71ae5a4SJacob Faibussowitsch { 14557b952d6SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 14657b952d6SSatish Balay Mat_SeqBAIJ *B = (Mat_SeqBAIJ *)baij->B->data; 147d0f46423SBarry Smith PetscInt nbs = B->nbs, i, bs = mat->rmap->bs; 14857b952d6SSatish Balay 149d64ed03dSBarry Smith PetscFunctionBegin; 150aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 151eec179cfSJacob Faibussowitsch PetscCall(PetscHMapICreateWithSize(baij->nbs, &baij->colmap)); 152c76ffc5fSJacob Faibussowitsch for (i = 0; i < nbs; i++) PetscCall(PetscHMapISet(baij->colmap, baij->garray[i] + 1, i * bs + 1)); 15348e59246SSatish Balay #else 1549566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(baij->Nbs + 1, &baij->colmap)); 155928fc39bSSatish Balay for (i = 0; i < nbs; i++) baij->colmap[baij->garray[i]] = i * bs + 1; 15648e59246SSatish Balay #endif 1573ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 15857b952d6SSatish Balay } 15957b952d6SSatish Balay 160d40312a9SBarry Smith #define MatSetValues_SeqBAIJ_A_Private(row, col, value, addv, orow, ocol) \ 161a8f51744SPierre Jolivet do { \ 16280c1aa95SSatish Balay brow = row / bs; \ 1638e3a54c0SPierre Jolivet rp = PetscSafePointerPlusOffset(aj, ai[brow]); \ 1648e3a54c0SPierre Jolivet ap = PetscSafePointerPlusOffset(aa, bs2 * ai[brow]); \ 1659371c9d4SSatish Balay rmax = aimax[brow]; \ 1669371c9d4SSatish Balay nrow = ailen[brow]; \ 16780c1aa95SSatish Balay bcol = col / bs; \ 1689371c9d4SSatish Balay ridx = row % bs; \ 1699371c9d4SSatish Balay cidx = col % bs; \ 1709371c9d4SSatish Balay low = 0; \ 1719371c9d4SSatish Balay high = nrow; \ 172ab26458aSBarry Smith while (high - low > 3) { \ 173ab26458aSBarry Smith t = (low + high) / 2; \ 174ab26458aSBarry Smith if (rp[t] > bcol) high = t; \ 175ab26458aSBarry Smith else low = t; \ 176ab26458aSBarry Smith } \ 177ab26458aSBarry Smith for (_i = low; _i < high; _i++) { \ 17880c1aa95SSatish Balay if (rp[_i] > bcol) break; \ 17980c1aa95SSatish Balay if (rp[_i] == bcol) { \ 18080c1aa95SSatish Balay bap = ap + bs2 * _i + bs * cidx + ridx; \ 181eada6651SSatish Balay if (addv == ADD_VALUES) *bap += value; \ 182eada6651SSatish Balay else *bap = value; \ 183ac7a638eSSatish Balay goto a_noinsert; \ 18480c1aa95SSatish Balay } \ 18580c1aa95SSatish Balay } \ 18689280ab3SLois Curfman McInnes if (a->nonew == 1) goto a_noinsert; \ 1875f80ce2aSJacob Faibussowitsch PetscCheck(a->nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", orow, ocol); \ 188fef13f97SBarry Smith MatSeqXAIJReallocateAIJ(A, a->mbs, bs2, nrow, brow, bcol, rmax, aa, ai, aj, rp, ap, aimax, a->nonew, MatScalar); \ 18980c1aa95SSatish Balay N = nrow++ - 1; \ 19080c1aa95SSatish Balay /* shift up all the later entries in this row */ \ 1919566063dSJacob Faibussowitsch PetscCall(PetscArraymove(rp + _i + 1, rp + _i, N - _i + 1)); \ 1929566063dSJacob Faibussowitsch PetscCall(PetscArraymove(ap + bs2 * (_i + 1), ap + bs2 * _i, bs2 * (N - _i + 1))); \ 1939566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(ap + bs2 * _i, bs2)); \ 19480c1aa95SSatish Balay rp[_i] = bcol; \ 19580c1aa95SSatish Balay ap[bs2 * _i + bs * cidx + ridx] = value; \ 196ac7a638eSSatish Balay a_noinsert:; \ 19780c1aa95SSatish Balay ailen[brow] = nrow; \ 198a8f51744SPierre Jolivet } while (0) 19957b952d6SSatish Balay 200d40312a9SBarry Smith #define MatSetValues_SeqBAIJ_B_Private(row, col, value, addv, orow, ocol) \ 201a8f51744SPierre Jolivet do { \ 202ac7a638eSSatish Balay brow = row / bs; \ 2038e3a54c0SPierre Jolivet rp = PetscSafePointerPlusOffset(bj, bi[brow]); \ 2048e3a54c0SPierre Jolivet ap = PetscSafePointerPlusOffset(ba, bs2 * bi[brow]); \ 2059371c9d4SSatish Balay rmax = bimax[brow]; \ 2069371c9d4SSatish Balay nrow = bilen[brow]; \ 207ac7a638eSSatish Balay bcol = col / bs; \ 2089371c9d4SSatish Balay ridx = row % bs; \ 2099371c9d4SSatish Balay cidx = col % bs; \ 2109371c9d4SSatish Balay low = 0; \ 2119371c9d4SSatish Balay high = nrow; \ 212ac7a638eSSatish Balay while (high - low > 3) { \ 213ac7a638eSSatish Balay t = (low + high) / 2; \ 214ac7a638eSSatish Balay if (rp[t] > bcol) high = t; \ 215ac7a638eSSatish Balay else low = t; \ 216ac7a638eSSatish Balay } \ 217ac7a638eSSatish Balay for (_i = low; _i < high; _i++) { \ 218ac7a638eSSatish Balay if (rp[_i] > bcol) break; \ 219ac7a638eSSatish Balay if (rp[_i] == bcol) { \ 220ac7a638eSSatish Balay bap = ap + bs2 * _i + bs * cidx + ridx; \ 221ac7a638eSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 222ac7a638eSSatish Balay else *bap = value; \ 223ac7a638eSSatish Balay goto b_noinsert; \ 224ac7a638eSSatish Balay } \ 225ac7a638eSSatish Balay } \ 22689280ab3SLois Curfman McInnes if (b->nonew == 1) goto b_noinsert; \ 2275f80ce2aSJacob Faibussowitsch PetscCheck(b->nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", orow, ocol); \ 228fef13f97SBarry Smith MatSeqXAIJReallocateAIJ(B, b->mbs, bs2, nrow, brow, bcol, rmax, ba, bi, bj, rp, ap, bimax, b->nonew, MatScalar); \ 229ac7a638eSSatish Balay N = nrow++ - 1; \ 230ac7a638eSSatish Balay /* shift up all the later entries in this row */ \ 2319566063dSJacob Faibussowitsch PetscCall(PetscArraymove(rp + _i + 1, rp + _i, N - _i + 1)); \ 2329566063dSJacob Faibussowitsch PetscCall(PetscArraymove(ap + bs2 * (_i + 1), ap + bs2 * _i, bs2 * (N - _i + 1))); \ 2339566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(ap + bs2 * _i, bs2)); \ 234ac7a638eSSatish Balay rp[_i] = bcol; \ 235ac7a638eSSatish Balay ap[bs2 * _i + bs * cidx + ridx] = value; \ 236ac7a638eSSatish Balay b_noinsert:; \ 237ac7a638eSSatish Balay bilen[brow] = nrow; \ 238a8f51744SPierre Jolivet } while (0) 239ac7a638eSSatish Balay 240d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetValues_MPIBAIJ(Mat mat, PetscInt m, const PetscInt im[], PetscInt n, const PetscInt in[], const PetscScalar v[], InsertMode addv) 241d71ae5a4SJacob Faibussowitsch { 24257b952d6SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 24393fea6afSBarry Smith MatScalar value; 244ace3abfcSBarry Smith PetscBool roworiented = baij->roworiented; 245b24ad042SBarry Smith PetscInt i, j, row, col; 246d0f46423SBarry Smith PetscInt rstart_orig = mat->rmap->rstart; 247d0f46423SBarry Smith PetscInt rend_orig = mat->rmap->rend, cstart_orig = mat->cmap->rstart; 248d0f46423SBarry Smith PetscInt cend_orig = mat->cmap->rend, bs = mat->rmap->bs; 24957b952d6SSatish Balay 250eada6651SSatish Balay /* Some Variables required in the macro */ 25180c1aa95SSatish Balay Mat A = baij->A; 25257508eceSPierre Jolivet Mat_SeqBAIJ *a = (Mat_SeqBAIJ *)A->data; 253b24ad042SBarry Smith PetscInt *aimax = a->imax, *ai = a->i, *ailen = a->ilen, *aj = a->j; 2543eda8832SBarry Smith MatScalar *aa = a->a; 255ac7a638eSSatish Balay 256ac7a638eSSatish Balay Mat B = baij->B; 25757508eceSPierre Jolivet Mat_SeqBAIJ *b = (Mat_SeqBAIJ *)B->data; 258b24ad042SBarry Smith PetscInt *bimax = b->imax, *bi = b->i, *bilen = b->ilen, *bj = b->j; 2593eda8832SBarry Smith MatScalar *ba = b->a; 260ac7a638eSSatish Balay 261b24ad042SBarry Smith PetscInt *rp, ii, nrow, _i, rmax, N, brow, bcol; 262b24ad042SBarry Smith PetscInt low, high, t, ridx, cidx, bs2 = a->bs2; 2633eda8832SBarry Smith MatScalar *ap, *bap; 26480c1aa95SSatish Balay 265d64ed03dSBarry Smith PetscFunctionBegin; 26657b952d6SSatish Balay for (i = 0; i < m; i++) { 2675ef9f2a5SBarry Smith if (im[i] < 0) continue; 2685f80ce2aSJacob Faibussowitsch PetscCheck(im[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, im[i], mat->rmap->N - 1); 26957b952d6SSatish Balay if (im[i] >= rstart_orig && im[i] < rend_orig) { 27057b952d6SSatish Balay row = im[i] - rstart_orig; 27157b952d6SSatish Balay for (j = 0; j < n; j++) { 27257b952d6SSatish Balay if (in[j] >= cstart_orig && in[j] < cend_orig) { 27357b952d6SSatish Balay col = in[j] - cstart_orig; 274db4deed7SKarl Rupp if (roworiented) value = v[i * n + j]; 275db4deed7SKarl Rupp else value = v[i + j * m]; 276d40312a9SBarry Smith MatSetValues_SeqBAIJ_A_Private(row, col, value, addv, im[i], in[j]); 277f7d195e4SLawrence Mitchell } else if (in[j] < 0) { 278f7d195e4SLawrence Mitchell continue; 279f7d195e4SLawrence Mitchell } else { 280f7d195e4SLawrence Mitchell PetscCheck(in[j] < mat->cmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, in[j], mat->cmap->N - 1); 28157b952d6SSatish Balay if (mat->was_assembled) { 28248a46eb9SPierre Jolivet if (!baij->colmap) PetscCall(MatCreateColmap_MPIBAIJ_Private(mat)); 283aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 284eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIGetWithDefault(baij->colmap, in[j] / bs + 1, 0, &col)); 285bba1ac68SSatish Balay col = col - 1; 28648e59246SSatish Balay #else 287bba1ac68SSatish Balay col = baij->colmap[in[j] / bs] - 1; 28848e59246SSatish Balay #endif 289f4f49eeaSPierre Jolivet if (col < 0 && !((Mat_SeqBAIJ *)baij->B->data)->nonew) { 2909566063dSJacob Faibussowitsch PetscCall(MatDisAssemble_MPIBAIJ(mat)); 2918295de27SSatish Balay col = in[j]; 2929bf004c3SSatish Balay /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */ 2939bf004c3SSatish Balay B = baij->B; 29457508eceSPierre Jolivet b = (Mat_SeqBAIJ *)B->data; 2959371c9d4SSatish Balay bimax = b->imax; 2969371c9d4SSatish Balay bi = b->i; 2979371c9d4SSatish Balay bilen = b->ilen; 2989371c9d4SSatish Balay bj = b->j; 2999bf004c3SSatish Balay ba = b->a; 300f7d195e4SLawrence Mitchell } else { 301f7d195e4SLawrence Mitchell PetscCheck(col >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", im[i], in[j]); 302f7d195e4SLawrence Mitchell col += in[j] % bs; 303f7d195e4SLawrence Mitchell } 3048295de27SSatish Balay } else col = in[j]; 305db4deed7SKarl Rupp if (roworiented) value = v[i * n + j]; 306db4deed7SKarl Rupp else value = v[i + j * m]; 307d40312a9SBarry Smith MatSetValues_SeqBAIJ_B_Private(row, col, value, addv, im[i], in[j]); 3089566063dSJacob Faibussowitsch /* PetscCall(MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv)); */ 30957b952d6SSatish Balay } 31057b952d6SSatish Balay } 311d64ed03dSBarry Smith } else { 3125f80ce2aSJacob Faibussowitsch PetscCheck(!mat->nooffprocentries, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Setting off process row %" PetscInt_FMT " even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set", im[i]); 31390f02eecSBarry Smith if (!baij->donotstash) { 3145080c13bSMatthew G Knepley mat->assembled = PETSC_FALSE; 315ff2fd236SBarry Smith if (roworiented) { 3169566063dSJacob Faibussowitsch PetscCall(MatStashValuesRow_Private(&mat->stash, im[i], n, in, v + i * n, PETSC_FALSE)); 317ff2fd236SBarry Smith } else { 3189566063dSJacob Faibussowitsch PetscCall(MatStashValuesCol_Private(&mat->stash, im[i], n, in, v + i, m, PETSC_FALSE)); 31957b952d6SSatish Balay } 32057b952d6SSatish Balay } 32157b952d6SSatish Balay } 32290f02eecSBarry Smith } 3233ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 32457b952d6SSatish Balay } 32557b952d6SSatish Balay 326d71ae5a4SJacob Faibussowitsch static inline PetscErrorCode MatSetValuesBlocked_SeqBAIJ_Inlined(Mat A, PetscInt row, PetscInt col, const PetscScalar v[], InsertMode is, PetscInt orow, PetscInt ocol) 327d71ae5a4SJacob Faibussowitsch { 328880c6e6aSBarry Smith Mat_SeqBAIJ *a = (Mat_SeqBAIJ *)A->data; 3298ab52850SBarry Smith PetscInt *rp, low, high, t, ii, jj, nrow, i, rmax, N; 330880c6e6aSBarry Smith PetscInt *imax = a->imax, *ai = a->i, *ailen = a->ilen; 3318ab52850SBarry Smith PetscInt *aj = a->j, nonew = a->nonew, bs2 = a->bs2, bs = A->rmap->bs; 332880c6e6aSBarry Smith PetscBool roworiented = a->roworiented; 333880c6e6aSBarry Smith const PetscScalar *value = v; 334880c6e6aSBarry Smith MatScalar *ap, *aa = a->a, *bap; 335880c6e6aSBarry Smith 336880c6e6aSBarry Smith PetscFunctionBegin; 337880c6e6aSBarry Smith rp = aj + ai[row]; 338880c6e6aSBarry Smith ap = aa + bs2 * ai[row]; 339880c6e6aSBarry Smith rmax = imax[row]; 340880c6e6aSBarry Smith nrow = ailen[row]; 3418ab52850SBarry Smith value = v; 3428ab52850SBarry Smith low = 0; 3438ab52850SBarry Smith high = nrow; 344880c6e6aSBarry Smith while (high - low > 7) { 345880c6e6aSBarry Smith t = (low + high) / 2; 346880c6e6aSBarry Smith if (rp[t] > col) high = t; 347880c6e6aSBarry Smith else low = t; 348880c6e6aSBarry Smith } 349880c6e6aSBarry Smith for (i = low; i < high; i++) { 350880c6e6aSBarry Smith if (rp[i] > col) break; 351880c6e6aSBarry Smith if (rp[i] == col) { 352880c6e6aSBarry Smith bap = ap + bs2 * i; 353880c6e6aSBarry Smith if (roworiented) { 354880c6e6aSBarry Smith if (is == ADD_VALUES) { 3558ab52850SBarry Smith for (ii = 0; ii < bs; ii++) { 356ad540459SPierre Jolivet for (jj = ii; jj < bs2; jj += bs) bap[jj] += *value++; 357880c6e6aSBarry Smith } 358880c6e6aSBarry Smith } else { 3598ab52850SBarry Smith for (ii = 0; ii < bs; ii++) { 360ad540459SPierre Jolivet for (jj = ii; jj < bs2; jj += bs) bap[jj] = *value++; 361880c6e6aSBarry Smith } 362880c6e6aSBarry Smith } 363880c6e6aSBarry Smith } else { 364880c6e6aSBarry Smith if (is == ADD_VALUES) { 3658ab52850SBarry Smith for (ii = 0; ii < bs; ii++, value += bs) { 366ad540459SPierre Jolivet for (jj = 0; jj < bs; jj++) bap[jj] += value[jj]; 367880c6e6aSBarry Smith bap += bs; 368880c6e6aSBarry Smith } 369880c6e6aSBarry Smith } else { 3708ab52850SBarry Smith for (ii = 0; ii < bs; ii++, value += bs) { 371ad540459SPierre Jolivet for (jj = 0; jj < bs; jj++) bap[jj] = value[jj]; 372880c6e6aSBarry Smith bap += bs; 373880c6e6aSBarry Smith } 374880c6e6aSBarry Smith } 375880c6e6aSBarry Smith } 376880c6e6aSBarry Smith goto noinsert2; 377880c6e6aSBarry Smith } 378880c6e6aSBarry Smith } 379880c6e6aSBarry Smith if (nonew == 1) goto noinsert2; 3805f80ce2aSJacob Faibussowitsch PetscCheck(nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new global block indexed nonzero block (%" PetscInt_FMT ", %" PetscInt_FMT ") in the matrix", orow, ocol); 381880c6e6aSBarry Smith MatSeqXAIJReallocateAIJ(A, a->mbs, bs2, nrow, row, col, rmax, aa, ai, aj, rp, ap, imax, nonew, MatScalar); 3829371c9d4SSatish Balay N = nrow++ - 1; 3839371c9d4SSatish Balay high++; 384880c6e6aSBarry Smith /* shift up all the later entries in this row */ 3859566063dSJacob Faibussowitsch PetscCall(PetscArraymove(rp + i + 1, rp + i, N - i + 1)); 3869566063dSJacob Faibussowitsch PetscCall(PetscArraymove(ap + bs2 * (i + 1), ap + bs2 * i, bs2 * (N - i + 1))); 387880c6e6aSBarry Smith rp[i] = col; 388880c6e6aSBarry Smith bap = ap + bs2 * i; 389880c6e6aSBarry Smith if (roworiented) { 3908ab52850SBarry Smith for (ii = 0; ii < bs; ii++) { 391ad540459SPierre Jolivet for (jj = ii; jj < bs2; jj += bs) bap[jj] = *value++; 392880c6e6aSBarry Smith } 393880c6e6aSBarry Smith } else { 3948ab52850SBarry Smith for (ii = 0; ii < bs; ii++) { 395ad540459SPierre Jolivet for (jj = 0; jj < bs; jj++) *bap++ = *value++; 396880c6e6aSBarry Smith } 397880c6e6aSBarry Smith } 398880c6e6aSBarry Smith noinsert2:; 399880c6e6aSBarry Smith ailen[row] = nrow; 4003ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 401880c6e6aSBarry Smith } 402880c6e6aSBarry Smith 4038ab52850SBarry Smith /* 4048ab52850SBarry Smith This routine should be optimized so that the block copy at ** Here a copy is required ** below is not needed 4058ab52850SBarry Smith by passing additional stride information into the MatSetValuesBlocked_SeqBAIJ_Inlined() routine 4068ab52850SBarry Smith */ 40766976f2fSJacob Faibussowitsch static PetscErrorCode MatSetValuesBlocked_MPIBAIJ(Mat mat, PetscInt m, const PetscInt im[], PetscInt n, const PetscInt in[], const PetscScalar v[], InsertMode addv) 408d71ae5a4SJacob Faibussowitsch { 409ab26458aSBarry Smith Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 410dd6ea824SBarry Smith const PetscScalar *value; 411f15d580aSBarry Smith MatScalar *barray = baij->barray; 412ace3abfcSBarry Smith PetscBool roworiented = baij->roworiented; 413899cda47SBarry Smith PetscInt i, j, ii, jj, row, col, rstart = baij->rstartbs; 414899cda47SBarry Smith PetscInt rend = baij->rendbs, cstart = baij->cstartbs, stepval; 415d0f46423SBarry Smith PetscInt cend = baij->cendbs, bs = mat->rmap->bs, bs2 = baij->bs2; 416ab26458aSBarry Smith 417b16ae2b1SBarry Smith PetscFunctionBegin; 41830793edcSSatish Balay if (!barray) { 4199566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(bs2, &barray)); 42082502324SSatish Balay baij->barray = barray; 42130793edcSSatish Balay } 42230793edcSSatish Balay 42326fbe8dcSKarl Rupp if (roworiented) stepval = (n - 1) * bs; 42426fbe8dcSKarl Rupp else stepval = (m - 1) * bs; 42526fbe8dcSKarl Rupp 426ab26458aSBarry Smith for (i = 0; i < m; i++) { 4275ef9f2a5SBarry Smith if (im[i] < 0) continue; 4286bdcaf15SBarry Smith PetscCheck(im[i] < baij->Mbs, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Block indexed row too large %" PetscInt_FMT " max %" PetscInt_FMT, im[i], baij->Mbs - 1); 429ab26458aSBarry Smith if (im[i] >= rstart && im[i] < rend) { 430ab26458aSBarry Smith row = im[i] - rstart; 431ab26458aSBarry Smith for (j = 0; j < n; j++) { 43215b57d14SSatish Balay /* If NumCol = 1 then a copy is not required */ 43315b57d14SSatish Balay if ((roworiented) && (n == 1)) { 434f15d580aSBarry Smith barray = (MatScalar *)v + i * bs2; 43515b57d14SSatish Balay } else if ((!roworiented) && (m == 1)) { 436f15d580aSBarry Smith barray = (MatScalar *)v + j * bs2; 43715b57d14SSatish Balay } else { /* Here a copy is required */ 438ab26458aSBarry Smith if (roworiented) { 43953ef36baSBarry Smith value = v + (i * (stepval + bs) + j) * bs; 440ab26458aSBarry Smith } else { 44153ef36baSBarry Smith value = v + (j * (stepval + bs) + i) * bs; 442abef11f7SSatish Balay } 44353ef36baSBarry Smith for (ii = 0; ii < bs; ii++, value += bs + stepval) { 44426fbe8dcSKarl Rupp for (jj = 0; jj < bs; jj++) barray[jj] = value[jj]; 44553ef36baSBarry Smith barray += bs; 44647513183SBarry Smith } 44730793edcSSatish Balay barray -= bs2; 44815b57d14SSatish Balay } 449abef11f7SSatish Balay 450abef11f7SSatish Balay if (in[j] >= cstart && in[j] < cend) { 451abef11f7SSatish Balay col = in[j] - cstart; 4529566063dSJacob Faibussowitsch PetscCall(MatSetValuesBlocked_SeqBAIJ_Inlined(baij->A, row, col, barray, addv, im[i], in[j])); 453f7d195e4SLawrence Mitchell } else if (in[j] < 0) { 454f7d195e4SLawrence Mitchell continue; 455f7d195e4SLawrence Mitchell } else { 456f7d195e4SLawrence Mitchell PetscCheck(in[j] < baij->Nbs, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Block indexed column too large %" PetscInt_FMT " max %" PetscInt_FMT, in[j], baij->Nbs - 1); 457ab26458aSBarry Smith if (mat->was_assembled) { 45848a46eb9SPierre Jolivet if (!baij->colmap) PetscCall(MatCreateColmap_MPIBAIJ_Private(mat)); 459a5eb4965SSatish Balay 460aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 461eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIGetWithDefault(baij->colmap, in[j] + 1, 0, &col)); 462b758ae8cSBarry Smith col = col < 1 ? -1 : (col - 1) / bs; 46348e59246SSatish Balay #else 464b758ae8cSBarry Smith col = baij->colmap[in[j]] < 1 ? -1 : (baij->colmap[in[j]] - 1) / bs; 46548e59246SSatish Balay #endif 466f4f49eeaSPierre Jolivet if (col < 0 && !((Mat_SeqBAIJ *)baij->B->data)->nonew) { 4679566063dSJacob Faibussowitsch PetscCall(MatDisAssemble_MPIBAIJ(mat)); 468ab26458aSBarry Smith col = in[j]; 4695f80ce2aSJacob Faibussowitsch } else PetscCheck(col >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new blocked indexed nonzero block (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", im[i], in[j]); 470db4deed7SKarl Rupp } else col = in[j]; 4719566063dSJacob Faibussowitsch PetscCall(MatSetValuesBlocked_SeqBAIJ_Inlined(baij->B, row, col, barray, addv, im[i], in[j])); 472ab26458aSBarry Smith } 473ab26458aSBarry Smith } 474d64ed03dSBarry Smith } else { 4755f80ce2aSJacob Faibussowitsch PetscCheck(!mat->nooffprocentries, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Setting off process block indexed row %" PetscInt_FMT " even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set", im[i]); 476ab26458aSBarry Smith if (!baij->donotstash) { 477ff2fd236SBarry Smith if (roworiented) { 4789566063dSJacob Faibussowitsch PetscCall(MatStashValuesRowBlocked_Private(&mat->bstash, im[i], n, in, v, m, n, i)); 479ff2fd236SBarry Smith } else { 4809566063dSJacob Faibussowitsch PetscCall(MatStashValuesColBlocked_Private(&mat->bstash, im[i], n, in, v, m, n, i)); 481ff2fd236SBarry Smith } 482abef11f7SSatish Balay } 483ab26458aSBarry Smith } 484ab26458aSBarry Smith } 4853ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 486ab26458aSBarry Smith } 4876fa18ffdSBarry Smith 4880bdbc534SSatish Balay #define HASH_KEY 0.6180339887 489b24ad042SBarry Smith #define HASH(size, key, tmp) (tmp = (key) * HASH_KEY, (PetscInt)((size) * (tmp - (PetscInt)tmp))) 490b24ad042SBarry Smith /* #define HASH(size,key) ((PetscInt)((size)*fmod(((key)*HASH_KEY),1))) */ 491b24ad042SBarry Smith /* #define HASH(size,key,tmp) ((PetscInt)((size)*fmod(((key)*HASH_KEY),1))) */ 49266976f2fSJacob Faibussowitsch static PetscErrorCode MatSetValues_MPIBAIJ_HT(Mat mat, PetscInt m, const PetscInt im[], PetscInt n, const PetscInt in[], const PetscScalar v[], InsertMode addv) 493d71ae5a4SJacob Faibussowitsch { 4940bdbc534SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 495ace3abfcSBarry Smith PetscBool roworiented = baij->roworiented; 496b24ad042SBarry Smith PetscInt i, j, row, col; 497d0f46423SBarry Smith PetscInt rstart_orig = mat->rmap->rstart; 498d0f46423SBarry Smith PetscInt rend_orig = mat->rmap->rend, Nbs = baij->Nbs; 499d0f46423SBarry Smith PetscInt h1, key, size = baij->ht_size, bs = mat->rmap->bs, *HT = baij->ht, idx; 500329f5518SBarry Smith PetscReal tmp; 5013eda8832SBarry Smith MatScalar **HD = baij->hd, value; 502b24ad042SBarry Smith PetscInt total_ct = baij->ht_total_ct, insert_ct = baij->ht_insert_ct; 5030bdbc534SSatish Balay 5040bdbc534SSatish Balay PetscFunctionBegin; 5050bdbc534SSatish Balay for (i = 0; i < m; i++) { 50676bd3646SJed Brown if (PetscDefined(USE_DEBUG)) { 5075f80ce2aSJacob Faibussowitsch PetscCheck(im[i] >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Negative row"); 5085f80ce2aSJacob Faibussowitsch PetscCheck(im[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, im[i], mat->rmap->N - 1); 50976bd3646SJed Brown } 5100bdbc534SSatish Balay row = im[i]; 511c2760754SSatish Balay if (row >= rstart_orig && row < rend_orig) { 5120bdbc534SSatish Balay for (j = 0; j < n; j++) { 5130bdbc534SSatish Balay col = in[j]; 514db4deed7SKarl Rupp if (roworiented) value = v[i * n + j]; 515db4deed7SKarl Rupp else value = v[i + j * m]; 516b24ad042SBarry Smith /* Look up PetscInto the Hash Table */ 517c2760754SSatish Balay key = (row / bs) * Nbs + (col / bs) + 1; 518c2760754SSatish Balay h1 = HASH(size, key, tmp); 5190bdbc534SSatish Balay 520c2760754SSatish Balay idx = h1; 52176bd3646SJed Brown if (PetscDefined(USE_DEBUG)) { 522187ce0cbSSatish Balay insert_ct++; 523187ce0cbSSatish Balay total_ct++; 524187ce0cbSSatish Balay if (HT[idx] != key) { 525fbccb6d4SPierre Jolivet for (idx = h1; (idx < size) && (HT[idx] != key); idx++, total_ct++); 526187ce0cbSSatish Balay if (idx == size) { 527fbccb6d4SPierre Jolivet for (idx = 0; (idx < h1) && (HT[idx] != key); idx++, total_ct++); 5285f80ce2aSJacob Faibussowitsch PetscCheck(idx != h1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "(%" PetscInt_FMT ",%" PetscInt_FMT ") has no entry in the hash table", row, col); 529187ce0cbSSatish Balay } 530187ce0cbSSatish Balay } 53176bd3646SJed Brown } else if (HT[idx] != key) { 532fbccb6d4SPierre Jolivet for (idx = h1; (idx < size) && (HT[idx] != key); idx++); 533c2760754SSatish Balay if (idx == size) { 534fbccb6d4SPierre Jolivet for (idx = 0; (idx < h1) && (HT[idx] != key); idx++); 5355f80ce2aSJacob Faibussowitsch PetscCheck(idx != h1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "(%" PetscInt_FMT ",%" PetscInt_FMT ") has no entry in the hash table", row, col); 536c2760754SSatish Balay } 537c2760754SSatish Balay } 538c2760754SSatish Balay /* A HASH table entry is found, so insert the values at the correct address */ 539c2760754SSatish Balay if (addv == ADD_VALUES) *(HD[idx] + (col % bs) * bs + (row % bs)) += value; 540c2760754SSatish Balay else *(HD[idx] + (col % bs) * bs + (row % bs)) = value; 5410bdbc534SSatish Balay } 54226fbe8dcSKarl Rupp } else if (!baij->donotstash) { 543ff2fd236SBarry Smith if (roworiented) { 5449566063dSJacob Faibussowitsch PetscCall(MatStashValuesRow_Private(&mat->stash, im[i], n, in, v + i * n, PETSC_FALSE)); 545ff2fd236SBarry Smith } else { 5469566063dSJacob Faibussowitsch PetscCall(MatStashValuesCol_Private(&mat->stash, im[i], n, in, v + i, m, PETSC_FALSE)); 5470bdbc534SSatish Balay } 5480bdbc534SSatish Balay } 5490bdbc534SSatish Balay } 55076bd3646SJed Brown if (PetscDefined(USE_DEBUG)) { 551abf3b562SBarry Smith baij->ht_total_ct += total_ct; 552abf3b562SBarry Smith baij->ht_insert_ct += insert_ct; 55376bd3646SJed Brown } 5543ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5550bdbc534SSatish Balay } 5560bdbc534SSatish Balay 55766976f2fSJacob Faibussowitsch static PetscErrorCode MatSetValuesBlocked_MPIBAIJ_HT(Mat mat, PetscInt m, const PetscInt im[], PetscInt n, const PetscInt in[], const PetscScalar v[], InsertMode addv) 558d71ae5a4SJacob Faibussowitsch { 5590bdbc534SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 560ace3abfcSBarry Smith PetscBool roworiented = baij->roworiented; 561b24ad042SBarry Smith PetscInt i, j, ii, jj, row, col; 562899cda47SBarry Smith PetscInt rstart = baij->rstartbs; 563d0f46423SBarry Smith PetscInt rend = mat->rmap->rend, stepval, bs = mat->rmap->bs, bs2 = baij->bs2, nbs2 = n * bs2; 564b24ad042SBarry Smith PetscInt h1, key, size = baij->ht_size, idx, *HT = baij->ht, Nbs = baij->Nbs; 565329f5518SBarry Smith PetscReal tmp; 5663eda8832SBarry Smith MatScalar **HD = baij->hd, *baij_a; 567dd6ea824SBarry Smith const PetscScalar *v_t, *value; 568b24ad042SBarry Smith PetscInt total_ct = baij->ht_total_ct, insert_ct = baij->ht_insert_ct; 5690bdbc534SSatish Balay 570d0a41580SSatish Balay PetscFunctionBegin; 57126fbe8dcSKarl Rupp if (roworiented) stepval = (n - 1) * bs; 57226fbe8dcSKarl Rupp else stepval = (m - 1) * bs; 57326fbe8dcSKarl Rupp 5740bdbc534SSatish Balay for (i = 0; i < m; i++) { 57576bd3646SJed Brown if (PetscDefined(USE_DEBUG)) { 5765f80ce2aSJacob Faibussowitsch PetscCheck(im[i] >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Negative row: %" PetscInt_FMT, im[i]); 5775f80ce2aSJacob Faibussowitsch PetscCheck(im[i] < baij->Mbs, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, im[i], baij->Mbs - 1); 57876bd3646SJed Brown } 5790bdbc534SSatish Balay row = im[i]; 580ab715e2cSSatish Balay v_t = v + i * nbs2; 581c2760754SSatish Balay if (row >= rstart && row < rend) { 5820bdbc534SSatish Balay for (j = 0; j < n; j++) { 5830bdbc534SSatish Balay col = in[j]; 5840bdbc534SSatish Balay 5850bdbc534SSatish Balay /* Look up into the Hash Table */ 586c2760754SSatish Balay key = row * Nbs + col + 1; 587c2760754SSatish Balay h1 = HASH(size, key, tmp); 5880bdbc534SSatish Balay 589c2760754SSatish Balay idx = h1; 59076bd3646SJed Brown if (PetscDefined(USE_DEBUG)) { 591187ce0cbSSatish Balay total_ct++; 592187ce0cbSSatish Balay insert_ct++; 593187ce0cbSSatish Balay if (HT[idx] != key) { 594fbccb6d4SPierre Jolivet for (idx = h1; (idx < size) && (HT[idx] != key); idx++, total_ct++); 595187ce0cbSSatish Balay if (idx == size) { 596fbccb6d4SPierre Jolivet for (idx = 0; (idx < h1) && (HT[idx] != key); idx++, total_ct++); 5975f80ce2aSJacob Faibussowitsch PetscCheck(idx != h1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "(%" PetscInt_FMT ",%" PetscInt_FMT ") has no entry in the hash table", row, col); 598187ce0cbSSatish Balay } 599187ce0cbSSatish Balay } 60076bd3646SJed Brown } else if (HT[idx] != key) { 601fbccb6d4SPierre Jolivet for (idx = h1; (idx < size) && (HT[idx] != key); idx++); 602c2760754SSatish Balay if (idx == size) { 603fbccb6d4SPierre Jolivet for (idx = 0; (idx < h1) && (HT[idx] != key); idx++); 6045f80ce2aSJacob Faibussowitsch PetscCheck(idx != h1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "(%" PetscInt_FMT ",%" PetscInt_FMT ") has no entry in the hash table", row, col); 605c2760754SSatish Balay } 606c2760754SSatish Balay } 607c2760754SSatish Balay baij_a = HD[idx]; 6080bdbc534SSatish Balay if (roworiented) { 609c2760754SSatish Balay /*value = v + i*(stepval+bs)*bs + j*bs;*/ 610187ce0cbSSatish Balay /* value = v + (i*(stepval+bs)+j)*bs; */ 611187ce0cbSSatish Balay value = v_t; 612187ce0cbSSatish Balay v_t += bs; 613fef45726SSatish Balay if (addv == ADD_VALUES) { 614c2760754SSatish Balay for (ii = 0; ii < bs; ii++, value += stepval) { 615ad540459SPierre Jolivet for (jj = ii; jj < bs2; jj += bs) baij_a[jj] += *value++; 616b4cc0f5aSSatish Balay } 617fef45726SSatish Balay } else { 618c2760754SSatish Balay for (ii = 0; ii < bs; ii++, value += stepval) { 619ad540459SPierre Jolivet for (jj = ii; jj < bs2; jj += bs) baij_a[jj] = *value++; 620fef45726SSatish Balay } 621fef45726SSatish Balay } 6220bdbc534SSatish Balay } else { 6230bdbc534SSatish Balay value = v + j * (stepval + bs) * bs + i * bs; 624fef45726SSatish Balay if (addv == ADD_VALUES) { 625b4cc0f5aSSatish Balay for (ii = 0; ii < bs; ii++, value += stepval, baij_a += bs) { 626ad540459SPierre Jolivet for (jj = 0; jj < bs; jj++) baij_a[jj] += *value++; 627fef45726SSatish Balay } 628fef45726SSatish Balay } else { 629fef45726SSatish Balay for (ii = 0; ii < bs; ii++, value += stepval, baij_a += bs) { 630ad540459SPierre Jolivet for (jj = 0; jj < bs; jj++) baij_a[jj] = *value++; 631b4cc0f5aSSatish Balay } 6320bdbc534SSatish Balay } 6330bdbc534SSatish Balay } 6340bdbc534SSatish Balay } 6350bdbc534SSatish Balay } else { 6360bdbc534SSatish Balay if (!baij->donotstash) { 6370bdbc534SSatish Balay if (roworiented) { 6389566063dSJacob Faibussowitsch PetscCall(MatStashValuesRowBlocked_Private(&mat->bstash, im[i], n, in, v, m, n, i)); 6390bdbc534SSatish Balay } else { 6409566063dSJacob Faibussowitsch PetscCall(MatStashValuesColBlocked_Private(&mat->bstash, im[i], n, in, v, m, n, i)); 6410bdbc534SSatish Balay } 6420bdbc534SSatish Balay } 6430bdbc534SSatish Balay } 6440bdbc534SSatish Balay } 64576bd3646SJed Brown if (PetscDefined(USE_DEBUG)) { 646abf3b562SBarry Smith baij->ht_total_ct += total_ct; 647abf3b562SBarry Smith baij->ht_insert_ct += insert_ct; 64876bd3646SJed Brown } 6493ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6500bdbc534SSatish Balay } 651133cdb44SSatish Balay 65266976f2fSJacob Faibussowitsch static PetscErrorCode MatGetValues_MPIBAIJ(Mat mat, PetscInt m, const PetscInt idxm[], PetscInt n, const PetscInt idxn[], PetscScalar v[]) 653d71ae5a4SJacob Faibussowitsch { 654d6de1c52SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 655d0f46423SBarry Smith PetscInt bs = mat->rmap->bs, i, j, bsrstart = mat->rmap->rstart, bsrend = mat->rmap->rend; 656d0f46423SBarry Smith PetscInt bscstart = mat->cmap->rstart, bscend = mat->cmap->rend, row, col, data; 657d6de1c52SSatish Balay 658133cdb44SSatish Balay PetscFunctionBegin; 659d6de1c52SSatish Balay for (i = 0; i < m; i++) { 66054c59aa7SJacob Faibussowitsch if (idxm[i] < 0) continue; /* negative row */ 66154c59aa7SJacob Faibussowitsch PetscCheck(idxm[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, idxm[i], mat->rmap->N - 1); 662966bd95aSPierre Jolivet PetscCheck(idxm[i] >= bsrstart && idxm[i] < bsrend, PETSC_COMM_SELF, PETSC_ERR_SUP, "Only local values currently supported"); 663d6de1c52SSatish Balay row = idxm[i] - bsrstart; 664d6de1c52SSatish Balay for (j = 0; j < n; j++) { 66554c59aa7SJacob Faibussowitsch if (idxn[j] < 0) continue; /* negative column */ 66654c59aa7SJacob Faibussowitsch PetscCheck(idxn[j] < mat->cmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, idxn[j], mat->cmap->N - 1); 667d6de1c52SSatish Balay if (idxn[j] >= bscstart && idxn[j] < bscend) { 668d6de1c52SSatish Balay col = idxn[j] - bscstart; 6699566063dSJacob Faibussowitsch PetscCall(MatGetValues_SeqBAIJ(baij->A, 1, &row, 1, &col, v + i * n + j)); 670d64ed03dSBarry Smith } else { 67148a46eb9SPierre Jolivet if (!baij->colmap) PetscCall(MatCreateColmap_MPIBAIJ_Private(mat)); 672aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 673eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIGetWithDefault(baij->colmap, idxn[j] / bs + 1, 0, &data)); 674fa46199cSSatish Balay data--; 67548e59246SSatish Balay #else 67648e59246SSatish Balay data = baij->colmap[idxn[j] / bs] - 1; 67748e59246SSatish Balay #endif 678966bd95aSPierre Jolivet if (data < 0 || baij->garray[data / bs] != idxn[j] / bs) *(v + i * n + j) = 0.0; 679d9d09a02SSatish Balay else { 68048e59246SSatish Balay col = data + idxn[j] % bs; 6819566063dSJacob Faibussowitsch PetscCall(MatGetValues_SeqBAIJ(baij->B, 1, &row, 1, &col, v + i * n + j)); 682d6de1c52SSatish Balay } 683d6de1c52SSatish Balay } 684d6de1c52SSatish Balay } 685d6de1c52SSatish Balay } 6863ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 687d6de1c52SSatish Balay } 688d6de1c52SSatish Balay 68966976f2fSJacob Faibussowitsch static PetscErrorCode MatNorm_MPIBAIJ(Mat mat, NormType type, PetscReal *nrm) 690d71ae5a4SJacob Faibussowitsch { 691d6de1c52SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 692d6de1c52SSatish Balay Mat_SeqBAIJ *amat = (Mat_SeqBAIJ *)baij->A->data, *bmat = (Mat_SeqBAIJ *)baij->B->data; 693d0f46423SBarry Smith PetscInt i, j, bs2 = baij->bs2, bs = baij->A->rmap->bs, nz, row, col; 694329f5518SBarry Smith PetscReal sum = 0.0; 6953eda8832SBarry Smith MatScalar *v; 696d6de1c52SSatish Balay 697d64ed03dSBarry Smith PetscFunctionBegin; 698d6de1c52SSatish Balay if (baij->size == 1) { 6999566063dSJacob Faibussowitsch PetscCall(MatNorm(baij->A, type, nrm)); 700d6de1c52SSatish Balay } else { 701d6de1c52SSatish Balay if (type == NORM_FROBENIUS) { 702d6de1c52SSatish Balay v = amat->a; 7038a62d963SHong Zhang nz = amat->nz * bs2; 7048a62d963SHong Zhang for (i = 0; i < nz; i++) { 7059371c9d4SSatish Balay sum += PetscRealPart(PetscConj(*v) * (*v)); 7069371c9d4SSatish Balay v++; 707d6de1c52SSatish Balay } 708d6de1c52SSatish Balay v = bmat->a; 7098a62d963SHong Zhang nz = bmat->nz * bs2; 7108a62d963SHong Zhang for (i = 0; i < nz; i++) { 7119371c9d4SSatish Balay sum += PetscRealPart(PetscConj(*v) * (*v)); 7129371c9d4SSatish Balay v++; 713d6de1c52SSatish Balay } 714462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&sum, nrm, 1, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)mat))); 7158f1a2a5eSBarry Smith *nrm = PetscSqrtReal(*nrm); 7168a62d963SHong Zhang } else if (type == NORM_1) { /* max column sum */ 717*8ba8550cSPierre Jolivet Vec col, bcol; 71875dbe01dSPierre Jolivet PetscScalar *array; 71975dbe01dSPierre Jolivet PetscInt *jj, *garray = baij->garray; 7206497c311SBarry Smith 72175dbe01dSPierre Jolivet PetscCall(MatCreateVecs(mat, &col, NULL)); 72275dbe01dSPierre Jolivet PetscCall(VecSet(col, 0.0)); 72375dbe01dSPierre Jolivet PetscCall(VecGetArrayWrite(col, &array)); 7249371c9d4SSatish Balay v = amat->a; 7259371c9d4SSatish Balay jj = amat->j; 7268a62d963SHong Zhang for (i = 0; i < amat->nz; i++) { 7278a62d963SHong Zhang for (j = 0; j < bs; j++) { 72875dbe01dSPierre Jolivet PetscInt col = bs * *jj + j; /* column index */ 72975dbe01dSPierre Jolivet 73075dbe01dSPierre Jolivet for (row = 0; row < bs; row++) array[col] += PetscAbsScalar(*v++); 7318a62d963SHong Zhang } 7328a62d963SHong Zhang jj++; 7338a62d963SHong Zhang } 73475dbe01dSPierre Jolivet PetscCall(VecRestoreArrayWrite(col, &array)); 735*8ba8550cSPierre Jolivet PetscCall(MatCreateVecs(baij->B, &bcol, NULL)); 736*8ba8550cSPierre Jolivet PetscCall(VecSet(bcol, 0.0)); 737*8ba8550cSPierre Jolivet PetscCall(VecGetArrayWrite(bcol, &array)); 7389371c9d4SSatish Balay v = bmat->a; 7399371c9d4SSatish Balay jj = bmat->j; 7408a62d963SHong Zhang for (i = 0; i < bmat->nz; i++) { 7418a62d963SHong Zhang for (j = 0; j < bs; j++) { 742*8ba8550cSPierre Jolivet PetscInt col = bs * *jj + j; /* column index */ 74375dbe01dSPierre Jolivet 744*8ba8550cSPierre Jolivet for (row = 0; row < bs; row++) array[col] += PetscAbsScalar(*v++); 7458a62d963SHong Zhang } 7468a62d963SHong Zhang jj++; 7478a62d963SHong Zhang } 748*8ba8550cSPierre Jolivet PetscCall(VecSetValuesBlocked(col, bmat->nbs, garray, array, ADD_VALUES)); 749*8ba8550cSPierre Jolivet PetscCall(VecRestoreArrayWrite(bcol, &array)); 750*8ba8550cSPierre Jolivet PetscCall(VecDestroy(&bcol)); 75175dbe01dSPierre Jolivet PetscCall(VecAssemblyBegin(col)); 75275dbe01dSPierre Jolivet PetscCall(VecAssemblyEnd(col)); 75375dbe01dSPierre Jolivet PetscCall(VecNorm(col, NORM_INFINITY, nrm)); 75475dbe01dSPierre Jolivet PetscCall(VecDestroy(&col)); 7558a62d963SHong Zhang } else if (type == NORM_INFINITY) { /* max row sum */ 756577dd1f9SKris Buschelman PetscReal *sums; 7579566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(bs, &sums)); 7588a62d963SHong Zhang sum = 0.0; 7598a62d963SHong Zhang for (j = 0; j < amat->mbs; j++) { 7608a62d963SHong Zhang for (row = 0; row < bs; row++) sums[row] = 0.0; 7618a62d963SHong Zhang v = amat->a + bs2 * amat->i[j]; 7628a62d963SHong Zhang nz = amat->i[j + 1] - amat->i[j]; 7638a62d963SHong Zhang for (i = 0; i < nz; i++) { 7648a62d963SHong Zhang for (col = 0; col < bs; col++) { 7658a62d963SHong Zhang for (row = 0; row < bs; row++) { 7669371c9d4SSatish Balay sums[row] += PetscAbsScalar(*v); 7679371c9d4SSatish Balay v++; 7688a62d963SHong Zhang } 7698a62d963SHong Zhang } 7708a62d963SHong Zhang } 7718a62d963SHong Zhang v = bmat->a + bs2 * bmat->i[j]; 7728a62d963SHong Zhang nz = bmat->i[j + 1] - bmat->i[j]; 7738a62d963SHong Zhang for (i = 0; i < nz; i++) { 7748a62d963SHong Zhang for (col = 0; col < bs; col++) { 7758a62d963SHong Zhang for (row = 0; row < bs; row++) { 7769371c9d4SSatish Balay sums[row] += PetscAbsScalar(*v); 7779371c9d4SSatish Balay v++; 7788a62d963SHong Zhang } 7798a62d963SHong Zhang } 7808a62d963SHong Zhang } 7818a62d963SHong Zhang for (row = 0; row < bs; row++) { 7828a62d963SHong Zhang if (sums[row] > sum) sum = sums[row]; 7838a62d963SHong Zhang } 7848a62d963SHong Zhang } 785462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&sum, nrm, 1, MPIU_REAL, MPIU_MAX, PetscObjectComm((PetscObject)mat))); 7869566063dSJacob Faibussowitsch PetscCall(PetscFree(sums)); 787ce94432eSBarry Smith } else SETERRQ(PetscObjectComm((PetscObject)mat), PETSC_ERR_SUP, "No support for this norm yet"); 788d64ed03dSBarry Smith } 7893ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 790d6de1c52SSatish Balay } 79157b952d6SSatish Balay 792fef45726SSatish Balay /* 793fef45726SSatish Balay Creates the hash table, and sets the table 794fef45726SSatish Balay This table is created only once. 79546091a0eSPierre Jolivet If new entries need to be added to the matrix 796fef45726SSatish Balay then the hash table has to be destroyed and 797fef45726SSatish Balay recreated. 798fef45726SSatish Balay */ 79966976f2fSJacob Faibussowitsch static PetscErrorCode MatCreateHashTable_MPIBAIJ_Private(Mat mat, PetscReal factor) 800d71ae5a4SJacob Faibussowitsch { 801596b8d2eSBarry Smith Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 802596b8d2eSBarry Smith Mat A = baij->A, B = baij->B; 803596b8d2eSBarry Smith Mat_SeqBAIJ *a = (Mat_SeqBAIJ *)A->data, *b = (Mat_SeqBAIJ *)B->data; 804b24ad042SBarry Smith PetscInt i, j, k, nz = a->nz + b->nz, h1, *ai = a->i, *aj = a->j, *bi = b->i, *bj = b->j; 805fca92195SBarry Smith PetscInt ht_size, bs2 = baij->bs2, rstart = baij->rstartbs; 806899cda47SBarry Smith PetscInt cstart = baij->cstartbs, *garray = baij->garray, row, col, Nbs = baij->Nbs; 807b24ad042SBarry Smith PetscInt *HT, key; 8083eda8832SBarry Smith MatScalar **HD; 809329f5518SBarry Smith PetscReal tmp; 8106cf91177SBarry Smith #if defined(PETSC_USE_INFO) 811b24ad042SBarry Smith PetscInt ct = 0, max = 0; 8124a15367fSSatish Balay #endif 813fef45726SSatish Balay 814d64ed03dSBarry Smith PetscFunctionBegin; 8153ba16761SJacob Faibussowitsch if (baij->ht) PetscFunctionReturn(PETSC_SUCCESS); 816fef45726SSatish Balay 817fca92195SBarry Smith baij->ht_size = (PetscInt)(factor * nz); 818fca92195SBarry Smith ht_size = baij->ht_size; 8190bdbc534SSatish Balay 820fef45726SSatish Balay /* Allocate Memory for Hash Table */ 8219566063dSJacob Faibussowitsch PetscCall(PetscCalloc2(ht_size, &baij->hd, ht_size, &baij->ht)); 822b9e4cc15SSatish Balay HD = baij->hd; 823a07cd24cSSatish Balay HT = baij->ht; 824b9e4cc15SSatish Balay 825596b8d2eSBarry Smith /* Loop Over A */ 8260bdbc534SSatish Balay for (i = 0; i < a->mbs; i++) { 827596b8d2eSBarry Smith for (j = ai[i]; j < ai[i + 1]; j++) { 8280bdbc534SSatish Balay row = i + rstart; 8290bdbc534SSatish Balay col = aj[j] + cstart; 830596b8d2eSBarry Smith 831187ce0cbSSatish Balay key = row * Nbs + col + 1; 832fca92195SBarry Smith h1 = HASH(ht_size, key, tmp); 833fca92195SBarry Smith for (k = 0; k < ht_size; k++) { 834fca92195SBarry Smith if (!HT[(h1 + k) % ht_size]) { 835fca92195SBarry Smith HT[(h1 + k) % ht_size] = key; 836fca92195SBarry Smith HD[(h1 + k) % ht_size] = a->a + j * bs2; 837596b8d2eSBarry Smith break; 8386cf91177SBarry Smith #if defined(PETSC_USE_INFO) 839187ce0cbSSatish Balay } else { 840187ce0cbSSatish Balay ct++; 841187ce0cbSSatish Balay #endif 842596b8d2eSBarry Smith } 843187ce0cbSSatish Balay } 8446cf91177SBarry Smith #if defined(PETSC_USE_INFO) 845187ce0cbSSatish Balay if (k > max) max = k; 846187ce0cbSSatish Balay #endif 847596b8d2eSBarry Smith } 848596b8d2eSBarry Smith } 849596b8d2eSBarry Smith /* Loop Over B */ 8500bdbc534SSatish Balay for (i = 0; i < b->mbs; i++) { 851596b8d2eSBarry Smith for (j = bi[i]; j < bi[i + 1]; j++) { 8520bdbc534SSatish Balay row = i + rstart; 8530bdbc534SSatish Balay col = garray[bj[j]]; 854187ce0cbSSatish Balay key = row * Nbs + col + 1; 855fca92195SBarry Smith h1 = HASH(ht_size, key, tmp); 856fca92195SBarry Smith for (k = 0; k < ht_size; k++) { 857fca92195SBarry Smith if (!HT[(h1 + k) % ht_size]) { 858fca92195SBarry Smith HT[(h1 + k) % ht_size] = key; 859fca92195SBarry Smith HD[(h1 + k) % ht_size] = b->a + j * bs2; 860596b8d2eSBarry Smith break; 8616cf91177SBarry Smith #if defined(PETSC_USE_INFO) 862187ce0cbSSatish Balay } else { 863187ce0cbSSatish Balay ct++; 864187ce0cbSSatish Balay #endif 865596b8d2eSBarry Smith } 866187ce0cbSSatish Balay } 8676cf91177SBarry Smith #if defined(PETSC_USE_INFO) 868187ce0cbSSatish Balay if (k > max) max = k; 869187ce0cbSSatish Balay #endif 870596b8d2eSBarry Smith } 871596b8d2eSBarry Smith } 872596b8d2eSBarry Smith 873596b8d2eSBarry Smith /* Print Summary */ 8746cf91177SBarry Smith #if defined(PETSC_USE_INFO) 875fca92195SBarry Smith for (i = 0, j = 0; i < ht_size; i++) { 87626fbe8dcSKarl Rupp if (HT[i]) j++; 877c38d4ed2SBarry Smith } 878835f2295SStefano Zampini PetscCall(PetscInfo(mat, "Average Search = %5.2g,max search = %" PetscInt_FMT "\n", (!j) ? 0.0 : (double)(((PetscReal)(ct + j)) / j), max)); 879187ce0cbSSatish Balay #endif 8803ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 881596b8d2eSBarry Smith } 88257b952d6SSatish Balay 88366976f2fSJacob Faibussowitsch static PetscErrorCode MatAssemblyBegin_MPIBAIJ(Mat mat, MatAssemblyType mode) 884d71ae5a4SJacob Faibussowitsch { 885bbb85fb3SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 886b24ad042SBarry Smith PetscInt nstash, reallocs; 887bbb85fb3SSatish Balay 888bbb85fb3SSatish Balay PetscFunctionBegin; 8893ba16761SJacob Faibussowitsch if (baij->donotstash || mat->nooffprocentries) PetscFunctionReturn(PETSC_SUCCESS); 890bbb85fb3SSatish Balay 8919566063dSJacob Faibussowitsch PetscCall(MatStashScatterBegin_Private(mat, &mat->stash, mat->rmap->range)); 8929566063dSJacob Faibussowitsch PetscCall(MatStashScatterBegin_Private(mat, &mat->bstash, baij->rangebs)); 8939566063dSJacob Faibussowitsch PetscCall(MatStashGetInfo_Private(&mat->stash, &nstash, &reallocs)); 8949566063dSJacob Faibussowitsch PetscCall(PetscInfo(mat, "Stash has %" PetscInt_FMT " entries,uses %" PetscInt_FMT " mallocs.\n", nstash, reallocs)); 8959566063dSJacob Faibussowitsch PetscCall(MatStashGetInfo_Private(&mat->bstash, &nstash, &reallocs)); 8969566063dSJacob Faibussowitsch PetscCall(PetscInfo(mat, "Block-Stash has %" PetscInt_FMT " entries, uses %" PetscInt_FMT " mallocs.\n", nstash, reallocs)); 8973ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 898bbb85fb3SSatish Balay } 899bbb85fb3SSatish Balay 90066976f2fSJacob Faibussowitsch static PetscErrorCode MatAssemblyEnd_MPIBAIJ(Mat mat, MatAssemblyType mode) 901d71ae5a4SJacob Faibussowitsch { 902bbb85fb3SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 90391c97fd4SSatish Balay Mat_SeqBAIJ *a = (Mat_SeqBAIJ *)baij->A->data; 904b24ad042SBarry Smith PetscInt i, j, rstart, ncols, flg, bs2 = baij->bs2; 905e44c0bd4SBarry Smith PetscInt *row, *col; 906c0edf612SJunchao Zhang PetscBool r1, r2, r3, all_assembled; 9073eda8832SBarry Smith MatScalar *val; 908b24ad042SBarry Smith PetscMPIInt n; 909bbb85fb3SSatish Balay 910bbb85fb3SSatish Balay PetscFunctionBegin; 9115fd66863SKarl Rupp /* do not use 'b=(Mat_SeqBAIJ*)baij->B->data' as B can be reset in disassembly */ 9124cb17eb5SBarry Smith if (!baij->donotstash && !mat->nooffprocentries) { 913a2d1c673SSatish Balay while (1) { 9149566063dSJacob Faibussowitsch PetscCall(MatStashScatterGetMesg_Private(&mat->stash, &n, &row, &col, &val, &flg)); 915a2d1c673SSatish Balay if (!flg) break; 916a2d1c673SSatish Balay 917bbb85fb3SSatish Balay for (i = 0; i < n;) { 918bbb85fb3SSatish Balay /* Now identify the consecutive vals belonging to the same row */ 91926fbe8dcSKarl Rupp for (j = i, rstart = row[j]; j < n; j++) { 92026fbe8dcSKarl Rupp if (row[j] != rstart) break; 92126fbe8dcSKarl Rupp } 922bbb85fb3SSatish Balay if (j < n) ncols = j - i; 923bbb85fb3SSatish Balay else ncols = n - i; 924bbb85fb3SSatish Balay /* Now assemble all these values with a single function call */ 9259566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPIBAIJ(mat, 1, row + i, ncols, col + i, val + i, mat->insertmode)); 926bbb85fb3SSatish Balay i = j; 927bbb85fb3SSatish Balay } 928bbb85fb3SSatish Balay } 9299566063dSJacob Faibussowitsch PetscCall(MatStashScatterEnd_Private(&mat->stash)); 930a2d1c673SSatish Balay /* Now process the block-stash. Since the values are stashed column-oriented, 9315e116b59SBarry Smith set the row-oriented flag to column-oriented, and after MatSetValues() 932a2d1c673SSatish Balay restore the original flags */ 933a2d1c673SSatish Balay r1 = baij->roworiented; 934a2d1c673SSatish Balay r2 = a->roworiented; 93591c97fd4SSatish Balay r3 = ((Mat_SeqBAIJ *)baij->B->data)->roworiented; 93626fbe8dcSKarl Rupp 9377c922b88SBarry Smith baij->roworiented = PETSC_FALSE; 9387c922b88SBarry Smith a->roworiented = PETSC_FALSE; 939f4f49eeaSPierre Jolivet ((Mat_SeqBAIJ *)baij->B->data)->roworiented = PETSC_FALSE; 940a2d1c673SSatish Balay while (1) { 9419566063dSJacob Faibussowitsch PetscCall(MatStashScatterGetMesg_Private(&mat->bstash, &n, &row, &col, &val, &flg)); 942a2d1c673SSatish Balay if (!flg) break; 943a2d1c673SSatish Balay 944a2d1c673SSatish Balay for (i = 0; i < n;) { 945a2d1c673SSatish Balay /* Now identify the consecutive vals belonging to the same row */ 94626fbe8dcSKarl Rupp for (j = i, rstart = row[j]; j < n; j++) { 94726fbe8dcSKarl Rupp if (row[j] != rstart) break; 94826fbe8dcSKarl Rupp } 949a2d1c673SSatish Balay if (j < n) ncols = j - i; 950a2d1c673SSatish Balay else ncols = n - i; 9519566063dSJacob Faibussowitsch PetscCall(MatSetValuesBlocked_MPIBAIJ(mat, 1, row + i, ncols, col + i, val + i * bs2, mat->insertmode)); 952a2d1c673SSatish Balay i = j; 953a2d1c673SSatish Balay } 954a2d1c673SSatish Balay } 9559566063dSJacob Faibussowitsch PetscCall(MatStashScatterEnd_Private(&mat->bstash)); 95626fbe8dcSKarl Rupp 957a2d1c673SSatish Balay baij->roworiented = r1; 958a2d1c673SSatish Balay a->roworiented = r2; 9595e116b59SBarry Smith ((Mat_SeqBAIJ *)baij->B->data)->roworiented = r3; 960bbb85fb3SSatish Balay } 961bbb85fb3SSatish Balay 9629566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(baij->A, mode)); 9639566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(baij->A, mode)); 964bbb85fb3SSatish Balay 965b638e6b4SJunchao Zhang /* determine if any process has disassembled, if so we must 9666aad120cSJose E. Roman also disassemble ourselves, in order that we may reassemble. */ 967bbb85fb3SSatish Balay /* 968bbb85fb3SSatish Balay if nonzero structure of submatrix B cannot change then we know that 969b638e6b4SJunchao Zhang no process disassembled thus we can skip this stuff 970bbb85fb3SSatish Balay */ 971bbb85fb3SSatish Balay if (!((Mat_SeqBAIJ *)baij->B->data)->nonew) { 9725440e5dcSBarry Smith PetscCallMPI(MPIU_Allreduce(&mat->was_assembled, &all_assembled, 1, MPI_C_BOOL, MPI_LAND, PetscObjectComm((PetscObject)mat))); 973c0edf612SJunchao Zhang if (mat->was_assembled && !all_assembled) PetscCall(MatDisAssemble_MPIBAIJ(mat)); 974bbb85fb3SSatish Balay } 975bbb85fb3SSatish Balay 97648a46eb9SPierre Jolivet if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) PetscCall(MatSetUpMultiply_MPIBAIJ(mat)); 9779566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(baij->B, mode)); 9789566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(baij->B, mode)); 979bbb85fb3SSatish Balay 9806cf91177SBarry Smith #if defined(PETSC_USE_INFO) 981bbb85fb3SSatish Balay if (baij->ht && mode == MAT_FINAL_ASSEMBLY) { 9829566063dSJacob Faibussowitsch PetscCall(PetscInfo(mat, "Average Hash Table Search in MatSetValues = %5.2f\n", (double)((PetscReal)baij->ht_total_ct) / baij->ht_insert_ct)); 98326fbe8dcSKarl Rupp 984bbb85fb3SSatish Balay baij->ht_total_ct = 0; 985bbb85fb3SSatish Balay baij->ht_insert_ct = 0; 986bbb85fb3SSatish Balay } 987bbb85fb3SSatish Balay #endif 988bbb85fb3SSatish Balay if (baij->ht_flag && !baij->ht && mode == MAT_FINAL_ASSEMBLY) { 9899566063dSJacob Faibussowitsch PetscCall(MatCreateHashTable_MPIBAIJ_Private(mat, baij->ht_fact)); 99026fbe8dcSKarl Rupp 991bbb85fb3SSatish Balay mat->ops->setvalues = MatSetValues_MPIBAIJ_HT; 992bbb85fb3SSatish Balay mat->ops->setvaluesblocked = MatSetValuesBlocked_MPIBAIJ_HT; 993bbb85fb3SSatish Balay } 994bbb85fb3SSatish Balay 9959566063dSJacob Faibussowitsch PetscCall(PetscFree2(baij->rowvalues, baij->rowindices)); 99626fbe8dcSKarl Rupp 997f4259b30SLisandro Dalcin baij->rowvalues = NULL; 9984f9cfa9eSBarry Smith 9994f9cfa9eSBarry Smith /* if no new nonzero locations are allowed in matrix then only set the matrix state the first time through */ 1000f4f49eeaSPierre Jolivet if ((!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) || !((Mat_SeqBAIJ *)baij->A->data)->nonew) { 1001e56f5c9eSBarry Smith PetscObjectState state = baij->A->nonzerostate + baij->B->nonzerostate; 1002462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&state, &mat->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)mat))); 1003e56f5c9eSBarry Smith } 10043ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1005bbb85fb3SSatish Balay } 100657b952d6SSatish Balay 10079804daf3SBarry Smith #include <petscdraw.h> 1008d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatView_MPIBAIJ_ASCIIorDraworSocket(Mat mat, PetscViewer viewer) 1009d71ae5a4SJacob Faibussowitsch { 101057b952d6SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 10117da1fb6eSBarry Smith PetscMPIInt rank = baij->rank; 1012d0f46423SBarry Smith PetscInt bs = mat->rmap->bs; 10139f196a02SMartin Diehl PetscBool isascii, isdraw; 1014b0a32e0cSBarry Smith PetscViewer sviewer; 1015f3ef73ceSBarry Smith PetscViewerFormat format; 101657b952d6SSatish Balay 1017d64ed03dSBarry Smith PetscFunctionBegin; 10189f196a02SMartin Diehl PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &isascii)); 10199566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERDRAW, &isdraw)); 10209f196a02SMartin Diehl if (isascii) { 10219566063dSJacob Faibussowitsch PetscCall(PetscViewerGetFormat(viewer, &format)); 1022456192e2SBarry Smith if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 10234e220ebcSLois Curfman McInnes MatInfo info; 10249566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)mat), &rank)); 10259566063dSJacob Faibussowitsch PetscCall(MatGetInfo(mat, MAT_LOCAL, &info)); 10269566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPushSynchronized(viewer)); 10279371c9d4SSatish Balay PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] Local rows %" PetscInt_FMT " nz %" PetscInt_FMT " nz alloced %" PetscInt_FMT " bs %" PetscInt_FMT " mem %g\n", rank, mat->rmap->n, (PetscInt)info.nz_used, (PetscInt)info.nz_allocated, 1028835f2295SStefano Zampini mat->rmap->bs, info.memory)); 10299566063dSJacob Faibussowitsch PetscCall(MatGetInfo(baij->A, MAT_LOCAL, &info)); 10309566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] on-diagonal part: nz %" PetscInt_FMT " \n", rank, (PetscInt)info.nz_used)); 10319566063dSJacob Faibussowitsch PetscCall(MatGetInfo(baij->B, MAT_LOCAL, &info)); 10329566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] off-diagonal part: nz %" PetscInt_FMT " \n", rank, (PetscInt)info.nz_used)); 10339566063dSJacob Faibussowitsch PetscCall(PetscViewerFlush(viewer)); 10349566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPopSynchronized(viewer)); 10359566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "Information on VecScatter used in matrix-vector product: \n")); 10369566063dSJacob Faibussowitsch PetscCall(VecScatterView(baij->Mvctx, viewer)); 10373ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1038fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_INFO) { 10399566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, " block size is %" PetscInt_FMT "\n", bs)); 10403ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 104104929863SHong Zhang } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) { 10423ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 104357b952d6SSatish Balay } 104457b952d6SSatish Balay } 104557b952d6SSatish Balay 10460f5bd95cSBarry Smith if (isdraw) { 1047b0a32e0cSBarry Smith PetscDraw draw; 1048ace3abfcSBarry Smith PetscBool isnull; 10499566063dSJacob Faibussowitsch PetscCall(PetscViewerDrawGetDraw(viewer, 0, &draw)); 10509566063dSJacob Faibussowitsch PetscCall(PetscDrawIsNull(draw, &isnull)); 10513ba16761SJacob Faibussowitsch if (isnull) PetscFunctionReturn(PETSC_SUCCESS); 105257b952d6SSatish Balay } 105357b952d6SSatish Balay 10547da1fb6eSBarry Smith { 105557b952d6SSatish Balay /* assemble the entire matrix onto first processor. */ 105657b952d6SSatish Balay Mat A; 105757b952d6SSatish Balay Mat_SeqBAIJ *Aloc; 1058d0f46423SBarry Smith PetscInt M = mat->rmap->N, N = mat->cmap->N, *ai, *aj, col, i, j, k, *rvals, mbs = baij->mbs; 10593eda8832SBarry Smith MatScalar *a; 10603e219373SBarry Smith const char *matname; 106157b952d6SSatish Balay 1062f204ca49SKris Buschelman /* Here we are creating a temporary matrix, so will assume MPIBAIJ is acceptable */ 1063f204ca49SKris Buschelman /* Perhaps this should be the type of mat? */ 10649566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)mat), &A)); 1065dd400576SPatrick Sanan if (rank == 0) { 10669566063dSJacob Faibussowitsch PetscCall(MatSetSizes(A, M, N, M, N)); 1067d64ed03dSBarry Smith } else { 10689566063dSJacob Faibussowitsch PetscCall(MatSetSizes(A, 0, 0, M, N)); 106957b952d6SSatish Balay } 10709566063dSJacob Faibussowitsch PetscCall(MatSetType(A, MATMPIBAIJ)); 10719566063dSJacob Faibussowitsch PetscCall(MatMPIBAIJSetPreallocation(A, mat->rmap->bs, 0, NULL, 0, NULL)); 10729566063dSJacob Faibussowitsch PetscCall(MatSetOption(A, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_FALSE)); 107357b952d6SSatish Balay 107457b952d6SSatish Balay /* copy over the A part */ 107557b952d6SSatish Balay Aloc = (Mat_SeqBAIJ *)baij->A->data; 10769371c9d4SSatish Balay ai = Aloc->i; 10779371c9d4SSatish Balay aj = Aloc->j; 10789371c9d4SSatish Balay a = Aloc->a; 10799566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(bs, &rvals)); 108057b952d6SSatish Balay 108157b952d6SSatish Balay for (i = 0; i < mbs; i++) { 1082899cda47SBarry Smith rvals[0] = bs * (baij->rstartbs + i); 108326fbe8dcSKarl Rupp for (j = 1; j < bs; j++) rvals[j] = rvals[j - 1] + 1; 108457b952d6SSatish Balay for (j = ai[i]; j < ai[i + 1]; j++) { 1085899cda47SBarry Smith col = (baij->cstartbs + aj[j]) * bs; 108657b952d6SSatish Balay for (k = 0; k < bs; k++) { 10879566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPIBAIJ(A, bs, rvals, 1, &col, a, INSERT_VALUES)); 10889371c9d4SSatish Balay col++; 10899371c9d4SSatish Balay a += bs; 109057b952d6SSatish Balay } 109157b952d6SSatish Balay } 109257b952d6SSatish Balay } 109357b952d6SSatish Balay /* copy over the B part */ 109457b952d6SSatish Balay Aloc = (Mat_SeqBAIJ *)baij->B->data; 10959371c9d4SSatish Balay ai = Aloc->i; 10969371c9d4SSatish Balay aj = Aloc->j; 10979371c9d4SSatish Balay a = Aloc->a; 109857b952d6SSatish Balay for (i = 0; i < mbs; i++) { 1099899cda47SBarry Smith rvals[0] = bs * (baij->rstartbs + i); 110026fbe8dcSKarl Rupp for (j = 1; j < bs; j++) rvals[j] = rvals[j - 1] + 1; 110157b952d6SSatish Balay for (j = ai[i]; j < ai[i + 1]; j++) { 110257b952d6SSatish Balay col = baij->garray[aj[j]] * bs; 110357b952d6SSatish Balay for (k = 0; k < bs; k++) { 11049566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPIBAIJ(A, bs, rvals, 1, &col, a, INSERT_VALUES)); 11059371c9d4SSatish Balay col++; 11069371c9d4SSatish Balay a += bs; 110757b952d6SSatish Balay } 110857b952d6SSatish Balay } 110957b952d6SSatish Balay } 11109566063dSJacob Faibussowitsch PetscCall(PetscFree(rvals)); 11119566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(A, MAT_FINAL_ASSEMBLY)); 11129566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(A, MAT_FINAL_ASSEMBLY)); 111355843e3eSBarry Smith /* 111455843e3eSBarry Smith Everyone has to call to draw the matrix since the graphics waits are 1115b0a32e0cSBarry Smith synchronized across all processors that share the PetscDraw object 111655843e3eSBarry Smith */ 11179566063dSJacob Faibussowitsch PetscCall(PetscViewerGetSubViewer(viewer, PETSC_COMM_SELF, &sviewer)); 111823a3927dSBarry Smith if (((PetscObject)mat)->name) PetscCall(PetscObjectGetName((PetscObject)mat, &matname)); 1119dd400576SPatrick Sanan if (rank == 0) { 1120f4f49eeaSPierre Jolivet if (((PetscObject)mat)->name) PetscCall(PetscObjectSetName((PetscObject)((Mat_MPIBAIJ *)A->data)->A, matname)); 1121f4f49eeaSPierre Jolivet PetscCall(MatView_SeqBAIJ(((Mat_MPIBAIJ *)A->data)->A, sviewer)); 112257b952d6SSatish Balay } 11239566063dSJacob Faibussowitsch PetscCall(PetscViewerRestoreSubViewer(viewer, PETSC_COMM_SELF, &sviewer)); 11249566063dSJacob Faibussowitsch PetscCall(MatDestroy(&A)); 112557b952d6SSatish Balay } 11263ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 112757b952d6SSatish Balay } 112857b952d6SSatish Balay 1129618cc2edSLisandro Dalcin /* Used for both MPIBAIJ and MPISBAIJ matrices */ 1130d71ae5a4SJacob Faibussowitsch PetscErrorCode MatView_MPIBAIJ_Binary(Mat mat, PetscViewer viewer) 1131d71ae5a4SJacob Faibussowitsch { 1132b51a4376SLisandro Dalcin Mat_MPIBAIJ *aij = (Mat_MPIBAIJ *)mat->data; 1133b51a4376SLisandro Dalcin Mat_SeqBAIJ *A = (Mat_SeqBAIJ *)aij->A->data; 1134b51a4376SLisandro Dalcin Mat_SeqBAIJ *B = (Mat_SeqBAIJ *)aij->B->data; 1135b51a4376SLisandro Dalcin const PetscInt *garray = aij->garray; 113617a3732bSBarry Smith PetscInt header[4], M, N, m, rs, cs, bs, cnt, i, j, ja, jb, k, l; 11376497c311SBarry Smith PetscCount nz, hnz; 1138b51a4376SLisandro Dalcin PetscInt *rowlens, *colidxs; 1139b51a4376SLisandro Dalcin PetscScalar *matvals; 114017a3732bSBarry Smith PetscMPIInt rank; 1141660746e0SBarry Smith 1142660746e0SBarry Smith PetscFunctionBegin; 11439566063dSJacob Faibussowitsch PetscCall(PetscViewerSetUp(viewer)); 1144b51a4376SLisandro Dalcin 1145b51a4376SLisandro Dalcin M = mat->rmap->N; 1146b51a4376SLisandro Dalcin N = mat->cmap->N; 1147b51a4376SLisandro Dalcin m = mat->rmap->n; 1148b51a4376SLisandro Dalcin rs = mat->rmap->rstart; 1149b51a4376SLisandro Dalcin cs = mat->cmap->rstart; 1150b51a4376SLisandro Dalcin bs = mat->rmap->bs; 1151b51a4376SLisandro Dalcin nz = bs * bs * (A->nz + B->nz); 1152b51a4376SLisandro Dalcin 1153b51a4376SLisandro Dalcin /* write matrix header */ 1154660746e0SBarry Smith header[0] = MAT_FILE_CLASSID; 11559371c9d4SSatish Balay header[1] = M; 11569371c9d4SSatish Balay header[2] = N; 11576497c311SBarry Smith PetscCallMPI(MPI_Reduce(&nz, &hnz, 1, MPIU_COUNT, MPI_SUM, 0, PetscObjectComm((PetscObject)mat))); 115817a3732bSBarry Smith PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)mat), &rank)); 115917a3732bSBarry Smith if (rank == 0) PetscCall(PetscIntCast(hnz, &header[3])); 11609566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryWrite(viewer, header, 4, PETSC_INT)); 1161660746e0SBarry Smith 1162b51a4376SLisandro Dalcin /* fill in and store row lengths */ 11639566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m, &rowlens)); 1164b51a4376SLisandro Dalcin for (cnt = 0, i = 0; i < A->mbs; i++) 11659371c9d4SSatish Balay for (j = 0; j < bs; j++) rowlens[cnt++] = bs * (A->i[i + 1] - A->i[i] + B->i[i + 1] - B->i[i]); 11669566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryWriteAll(viewer, rowlens, m, rs, M, PETSC_INT)); 11679566063dSJacob Faibussowitsch PetscCall(PetscFree(rowlens)); 1168660746e0SBarry Smith 1169b51a4376SLisandro Dalcin /* fill in and store column indices */ 11709566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nz, &colidxs)); 1171b51a4376SLisandro Dalcin for (cnt = 0, i = 0; i < A->mbs; i++) { 1172b51a4376SLisandro Dalcin for (k = 0; k < bs; k++) { 1173b51a4376SLisandro Dalcin for (jb = B->i[i]; jb < B->i[i + 1]; jb++) { 1174b51a4376SLisandro Dalcin if (garray[B->j[jb]] > cs / bs) break; 11759371c9d4SSatish Balay for (l = 0; l < bs; l++) colidxs[cnt++] = bs * garray[B->j[jb]] + l; 1176660746e0SBarry Smith } 1177b51a4376SLisandro Dalcin for (ja = A->i[i]; ja < A->i[i + 1]; ja++) 11789371c9d4SSatish Balay for (l = 0; l < bs; l++) colidxs[cnt++] = bs * A->j[ja] + l + cs; 1179b51a4376SLisandro Dalcin for (; jb < B->i[i + 1]; jb++) 11809371c9d4SSatish Balay for (l = 0; l < bs; l++) colidxs[cnt++] = bs * garray[B->j[jb]] + l; 1181660746e0SBarry Smith } 1182660746e0SBarry Smith } 11836497c311SBarry Smith PetscCheck(cnt == nz, PETSC_COMM_SELF, PETSC_ERR_LIB, "Internal PETSc error: cnt = %" PetscInt_FMT " nz = %" PetscCount_FMT, cnt, nz); 11849566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryWriteAll(viewer, colidxs, nz, PETSC_DECIDE, PETSC_DECIDE, PETSC_INT)); 11859566063dSJacob Faibussowitsch PetscCall(PetscFree(colidxs)); 1186660746e0SBarry Smith 1187b51a4376SLisandro Dalcin /* fill in and store nonzero values */ 11889566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nz, &matvals)); 1189b51a4376SLisandro Dalcin for (cnt = 0, i = 0; i < A->mbs; i++) { 1190b51a4376SLisandro Dalcin for (k = 0; k < bs; k++) { 1191b51a4376SLisandro Dalcin for (jb = B->i[i]; jb < B->i[i + 1]; jb++) { 1192b51a4376SLisandro Dalcin if (garray[B->j[jb]] > cs / bs) break; 11939371c9d4SSatish Balay for (l = 0; l < bs; l++) matvals[cnt++] = B->a[bs * (bs * jb + l) + k]; 1194660746e0SBarry Smith } 1195b51a4376SLisandro Dalcin for (ja = A->i[i]; ja < A->i[i + 1]; ja++) 11969371c9d4SSatish Balay for (l = 0; l < bs; l++) matvals[cnt++] = A->a[bs * (bs * ja + l) + k]; 1197b51a4376SLisandro Dalcin for (; jb < B->i[i + 1]; jb++) 11989371c9d4SSatish Balay for (l = 0; l < bs; l++) matvals[cnt++] = B->a[bs * (bs * jb + l) + k]; 1199660746e0SBarry Smith } 1200b51a4376SLisandro Dalcin } 12019566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryWriteAll(viewer, matvals, nz, PETSC_DECIDE, PETSC_DECIDE, PETSC_SCALAR)); 12029566063dSJacob Faibussowitsch PetscCall(PetscFree(matvals)); 1203660746e0SBarry Smith 1204b51a4376SLisandro Dalcin /* write block size option to the viewer's .info file */ 12059566063dSJacob Faibussowitsch PetscCall(MatView_Binary_BlockSizes(mat, viewer)); 12063ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1207660746e0SBarry Smith } 1208660746e0SBarry Smith 1209d71ae5a4SJacob Faibussowitsch PetscErrorCode MatView_MPIBAIJ(Mat mat, PetscViewer viewer) 1210d71ae5a4SJacob Faibussowitsch { 12119f196a02SMartin Diehl PetscBool isascii, isdraw, issocket, isbinary; 121257b952d6SSatish Balay 1213d64ed03dSBarry Smith PetscFunctionBegin; 12149f196a02SMartin Diehl PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &isascii)); 12159566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERDRAW, &isdraw)); 12169566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERSOCKET, &issocket)); 12179566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary)); 1218ac530a7eSPierre Jolivet if (isascii || isdraw || issocket) PetscCall(MatView_MPIBAIJ_ASCIIorDraworSocket(mat, viewer)); 1219ac530a7eSPierre Jolivet else if (isbinary) PetscCall(MatView_MPIBAIJ_Binary(mat, viewer)); 12203ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 122157b952d6SSatish Balay } 122257b952d6SSatish Balay 122366976f2fSJacob Faibussowitsch static PetscErrorCode MatMult_MPIBAIJ(Mat A, Vec xx, Vec yy) 1224d71ae5a4SJacob Faibussowitsch { 1225cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 1226b24ad042SBarry Smith PetscInt nt; 1227cee3aa6bSSatish Balay 1228d64ed03dSBarry Smith PetscFunctionBegin; 12299566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(xx, &nt)); 12305f80ce2aSJacob Faibussowitsch PetscCheck(nt == A->cmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Incompatible partition of A and xx"); 12319566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(yy, &nt)); 1232da81f932SPierre Jolivet PetscCheck(nt == A->rmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Incompatible partition of A and yy"); 12339566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(a->Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD)); 12349566063dSJacob Faibussowitsch PetscCall((*a->A->ops->mult)(a->A, xx, yy)); 12359566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(a->Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD)); 12369566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multadd)(a->B, a->lvec, yy, yy)); 12373ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1238cee3aa6bSSatish Balay } 1239cee3aa6bSSatish Balay 124066976f2fSJacob Faibussowitsch static PetscErrorCode MatMultAdd_MPIBAIJ(Mat A, Vec xx, Vec yy, Vec zz) 1241d71ae5a4SJacob Faibussowitsch { 1242cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 1243d64ed03dSBarry Smith 1244d64ed03dSBarry Smith PetscFunctionBegin; 12459566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(a->Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD)); 12469566063dSJacob Faibussowitsch PetscCall((*a->A->ops->multadd)(a->A, xx, yy, zz)); 12479566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(a->Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD)); 12489566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multadd)(a->B, a->lvec, zz, zz)); 12493ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1250cee3aa6bSSatish Balay } 1251cee3aa6bSSatish Balay 125266976f2fSJacob Faibussowitsch static PetscErrorCode MatMultTranspose_MPIBAIJ(Mat A, Vec xx, Vec yy) 1253d71ae5a4SJacob Faibussowitsch { 1254cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 1255cee3aa6bSSatish Balay 1256d64ed03dSBarry Smith PetscFunctionBegin; 1257cee3aa6bSSatish Balay /* do nondiagonal part */ 12589566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multtranspose)(a->B, xx, a->lvec)); 1259cee3aa6bSSatish Balay /* do local part */ 12609566063dSJacob Faibussowitsch PetscCall((*a->A->ops->multtranspose)(a->A, xx, yy)); 1261e4a140f6SJunchao Zhang /* add partial results together */ 12629566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(a->Mvctx, a->lvec, yy, ADD_VALUES, SCATTER_REVERSE)); 12639566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(a->Mvctx, a->lvec, yy, ADD_VALUES, SCATTER_REVERSE)); 12643ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1265cee3aa6bSSatish Balay } 1266cee3aa6bSSatish Balay 126766976f2fSJacob Faibussowitsch static PetscErrorCode MatMultTransposeAdd_MPIBAIJ(Mat A, Vec xx, Vec yy, Vec zz) 1268d71ae5a4SJacob Faibussowitsch { 1269cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 1270cee3aa6bSSatish Balay 1271d64ed03dSBarry Smith PetscFunctionBegin; 1272cee3aa6bSSatish Balay /* do nondiagonal part */ 12739566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multtranspose)(a->B, xx, a->lvec)); 1274cee3aa6bSSatish Balay /* do local part */ 12759566063dSJacob Faibussowitsch PetscCall((*a->A->ops->multtransposeadd)(a->A, xx, yy, zz)); 1276e4a140f6SJunchao Zhang /* add partial results together */ 12779566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(a->Mvctx, a->lvec, zz, ADD_VALUES, SCATTER_REVERSE)); 12789566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(a->Mvctx, a->lvec, zz, ADD_VALUES, SCATTER_REVERSE)); 12793ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1280cee3aa6bSSatish Balay } 1281cee3aa6bSSatish Balay 1282cee3aa6bSSatish Balay /* 1283cee3aa6bSSatish Balay This only works correctly for square matrices where the subblock A->A is the 1284cee3aa6bSSatish Balay diagonal block 1285cee3aa6bSSatish Balay */ 128666976f2fSJacob Faibussowitsch static PetscErrorCode MatGetDiagonal_MPIBAIJ(Mat A, Vec v) 1287d71ae5a4SJacob Faibussowitsch { 1288d64ed03dSBarry Smith PetscFunctionBegin; 12895f80ce2aSJacob Faibussowitsch PetscCheck(A->rmap->N == A->cmap->N, PETSC_COMM_SELF, PETSC_ERR_SUP, "Supports only square matrix where A->A is diag block"); 12909566063dSJacob Faibussowitsch PetscCall(MatGetDiagonal(((Mat_MPIBAIJ *)A->data)->A, v)); 12913ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1292cee3aa6bSSatish Balay } 1293cee3aa6bSSatish Balay 129466976f2fSJacob Faibussowitsch static PetscErrorCode MatScale_MPIBAIJ(Mat A, PetscScalar aa) 1295d71ae5a4SJacob Faibussowitsch { 1296cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 1297d64ed03dSBarry Smith 1298d64ed03dSBarry Smith PetscFunctionBegin; 12999566063dSJacob Faibussowitsch PetscCall(MatScale(a->A, aa)); 13009566063dSJacob Faibussowitsch PetscCall(MatScale(a->B, aa)); 13013ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1302cee3aa6bSSatish Balay } 1303026e39d0SSatish Balay 1304523895eeSPierre Jolivet static PetscErrorCode MatGetRow_MPIBAIJ(Mat matin, PetscInt row, PetscInt *nz, PetscInt **idx, PetscScalar **v) 1305d71ae5a4SJacob Faibussowitsch { 1306acdf5bf4SSatish Balay Mat_MPIBAIJ *mat = (Mat_MPIBAIJ *)matin->data; 130787828ca2SBarry Smith PetscScalar *vworkA, *vworkB, **pvA, **pvB, *v_p; 1308d0f46423SBarry Smith PetscInt bs = matin->rmap->bs, bs2 = mat->bs2, i, *cworkA, *cworkB, **pcA, **pcB; 1309d0f46423SBarry Smith PetscInt nztot, nzA, nzB, lrow, brstart = matin->rmap->rstart, brend = matin->rmap->rend; 1310899cda47SBarry Smith PetscInt *cmap, *idx_p, cstart = mat->cstartbs; 1311acdf5bf4SSatish Balay 1312d64ed03dSBarry Smith PetscFunctionBegin; 13135f80ce2aSJacob Faibussowitsch PetscCheck(row >= brstart && row < brend, PETSC_COMM_SELF, PETSC_ERR_SUP, "Only local rows"); 13145f80ce2aSJacob Faibussowitsch PetscCheck(!mat->getrowactive, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Already active"); 1315acdf5bf4SSatish Balay mat->getrowactive = PETSC_TRUE; 1316acdf5bf4SSatish Balay 1317acdf5bf4SSatish Balay if (!mat->rowvalues && (idx || v)) { 1318acdf5bf4SSatish Balay /* 1319acdf5bf4SSatish Balay allocate enough space to hold information from the longest row. 1320acdf5bf4SSatish Balay */ 1321acdf5bf4SSatish Balay Mat_SeqBAIJ *Aa = (Mat_SeqBAIJ *)mat->A->data, *Ba = (Mat_SeqBAIJ *)mat->B->data; 1322b24ad042SBarry Smith PetscInt max = 1, mbs = mat->mbs, tmp; 1323bd16c2feSSatish Balay for (i = 0; i < mbs; i++) { 1324acdf5bf4SSatish Balay tmp = Aa->i[i + 1] - Aa->i[i] + Ba->i[i + 1] - Ba->i[i]; 132526fbe8dcSKarl Rupp if (max < tmp) max = tmp; 1326acdf5bf4SSatish Balay } 13279566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(max * bs2, &mat->rowvalues, max * bs2, &mat->rowindices)); 1328acdf5bf4SSatish Balay } 1329d9d09a02SSatish Balay lrow = row - brstart; 1330acdf5bf4SSatish Balay 13319371c9d4SSatish Balay pvA = &vworkA; 13329371c9d4SSatish Balay pcA = &cworkA; 13339371c9d4SSatish Balay pvB = &vworkB; 13349371c9d4SSatish Balay pcB = &cworkB; 13359371c9d4SSatish Balay if (!v) { 13369371c9d4SSatish Balay pvA = NULL; 13379371c9d4SSatish Balay pvB = NULL; 13389371c9d4SSatish Balay } 13399371c9d4SSatish Balay if (!idx) { 13409371c9d4SSatish Balay pcA = NULL; 13419371c9d4SSatish Balay if (!v) pcB = NULL; 13429371c9d4SSatish Balay } 13439566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->getrow)(mat->A, lrow, &nzA, pcA, pvA)); 13449566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->getrow)(mat->B, lrow, &nzB, pcB, pvB)); 1345acdf5bf4SSatish Balay nztot = nzA + nzB; 1346acdf5bf4SSatish Balay 1347acdf5bf4SSatish Balay cmap = mat->garray; 1348acdf5bf4SSatish Balay if (v || idx) { 1349acdf5bf4SSatish Balay if (nztot) { 1350acdf5bf4SSatish Balay /* Sort by increasing column numbers, assuming A and B already sorted */ 1351b24ad042SBarry Smith PetscInt imark = -1; 1352acdf5bf4SSatish Balay if (v) { 1353acdf5bf4SSatish Balay *v = v_p = mat->rowvalues; 1354acdf5bf4SSatish Balay for (i = 0; i < nzB; i++) { 1355d9d09a02SSatish Balay if (cmap[cworkB[i] / bs] < cstart) v_p[i] = vworkB[i]; 1356acdf5bf4SSatish Balay else break; 1357acdf5bf4SSatish Balay } 1358acdf5bf4SSatish Balay imark = i; 1359acdf5bf4SSatish Balay for (i = 0; i < nzA; i++) v_p[imark + i] = vworkA[i]; 1360acdf5bf4SSatish Balay for (i = imark; i < nzB; i++) v_p[nzA + i] = vworkB[i]; 1361acdf5bf4SSatish Balay } 1362acdf5bf4SSatish Balay if (idx) { 1363acdf5bf4SSatish Balay *idx = idx_p = mat->rowindices; 1364acdf5bf4SSatish Balay if (imark > -1) { 1365ad540459SPierre Jolivet for (i = 0; i < imark; i++) idx_p[i] = cmap[cworkB[i] / bs] * bs + cworkB[i] % bs; 1366acdf5bf4SSatish Balay } else { 1367acdf5bf4SSatish Balay for (i = 0; i < nzB; i++) { 136826fbe8dcSKarl Rupp if (cmap[cworkB[i] / bs] < cstart) idx_p[i] = cmap[cworkB[i] / bs] * bs + cworkB[i] % bs; 1369acdf5bf4SSatish Balay else break; 1370acdf5bf4SSatish Balay } 1371acdf5bf4SSatish Balay imark = i; 1372acdf5bf4SSatish Balay } 1373d9d09a02SSatish Balay for (i = 0; i < nzA; i++) idx_p[imark + i] = cstart * bs + cworkA[i]; 1374d9d09a02SSatish Balay for (i = imark; i < nzB; i++) idx_p[nzA + i] = cmap[cworkB[i] / bs] * bs + cworkB[i] % bs; 1375acdf5bf4SSatish Balay } 1376d64ed03dSBarry Smith } else { 1377f4259b30SLisandro Dalcin if (idx) *idx = NULL; 1378f4259b30SLisandro Dalcin if (v) *v = NULL; 1379d212a18eSSatish Balay } 1380acdf5bf4SSatish Balay } 1381acdf5bf4SSatish Balay *nz = nztot; 13829566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->restorerow)(mat->A, lrow, &nzA, pcA, pvA)); 13839566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->restorerow)(mat->B, lrow, &nzB, pcB, pvB)); 13843ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1385acdf5bf4SSatish Balay } 1386acdf5bf4SSatish Balay 1387523895eeSPierre Jolivet static PetscErrorCode MatRestoreRow_MPIBAIJ(Mat mat, PetscInt row, PetscInt *nz, PetscInt **idx, PetscScalar **v) 1388d71ae5a4SJacob Faibussowitsch { 1389acdf5bf4SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 1390d64ed03dSBarry Smith 1391d64ed03dSBarry Smith PetscFunctionBegin; 13925f80ce2aSJacob Faibussowitsch PetscCheck(baij->getrowactive, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "MatGetRow not called"); 1393acdf5bf4SSatish Balay baij->getrowactive = PETSC_FALSE; 13943ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1395acdf5bf4SSatish Balay } 1396acdf5bf4SSatish Balay 139766976f2fSJacob Faibussowitsch static PetscErrorCode MatZeroEntries_MPIBAIJ(Mat A) 1398d71ae5a4SJacob Faibussowitsch { 139958667388SSatish Balay Mat_MPIBAIJ *l = (Mat_MPIBAIJ *)A->data; 1400d64ed03dSBarry Smith 1401d64ed03dSBarry Smith PetscFunctionBegin; 14029566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(l->A)); 14039566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(l->B)); 14043ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 140558667388SSatish Balay } 14060ac07820SSatish Balay 140766976f2fSJacob Faibussowitsch static PetscErrorCode MatGetInfo_MPIBAIJ(Mat matin, MatInfoType flag, MatInfo *info) 1408d71ae5a4SJacob Faibussowitsch { 14094e220ebcSLois Curfman McInnes Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)matin->data; 14104e220ebcSLois Curfman McInnes Mat A = a->A, B = a->B; 14113966268fSBarry Smith PetscLogDouble isend[5], irecv[5]; 14120ac07820SSatish Balay 1413d64ed03dSBarry Smith PetscFunctionBegin; 1414d0f46423SBarry Smith info->block_size = (PetscReal)matin->rmap->bs; 141526fbe8dcSKarl Rupp 14169566063dSJacob Faibussowitsch PetscCall(MatGetInfo(A, MAT_LOCAL, info)); 141726fbe8dcSKarl Rupp 14189371c9d4SSatish Balay isend[0] = info->nz_used; 14199371c9d4SSatish Balay isend[1] = info->nz_allocated; 14209371c9d4SSatish Balay isend[2] = info->nz_unneeded; 14219371c9d4SSatish Balay isend[3] = info->memory; 14229371c9d4SSatish Balay isend[4] = info->mallocs; 142326fbe8dcSKarl Rupp 14249566063dSJacob Faibussowitsch PetscCall(MatGetInfo(B, MAT_LOCAL, info)); 142526fbe8dcSKarl Rupp 14269371c9d4SSatish Balay isend[0] += info->nz_used; 14279371c9d4SSatish Balay isend[1] += info->nz_allocated; 14289371c9d4SSatish Balay isend[2] += info->nz_unneeded; 14299371c9d4SSatish Balay isend[3] += info->memory; 14309371c9d4SSatish Balay isend[4] += info->mallocs; 143126fbe8dcSKarl Rupp 14320ac07820SSatish Balay if (flag == MAT_LOCAL) { 14334e220ebcSLois Curfman McInnes info->nz_used = isend[0]; 14344e220ebcSLois Curfman McInnes info->nz_allocated = isend[1]; 14354e220ebcSLois Curfman McInnes info->nz_unneeded = isend[2]; 14364e220ebcSLois Curfman McInnes info->memory = isend[3]; 14374e220ebcSLois Curfman McInnes info->mallocs = isend[4]; 14380ac07820SSatish Balay } else if (flag == MAT_GLOBAL_MAX) { 1439462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(isend, irecv, 5, MPIU_PETSCLOGDOUBLE, MPI_MAX, PetscObjectComm((PetscObject)matin))); 144026fbe8dcSKarl Rupp 14414e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 14424e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 14434e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 14444e220ebcSLois Curfman McInnes info->memory = irecv[3]; 14454e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 14460ac07820SSatish Balay } else if (flag == MAT_GLOBAL_SUM) { 1447462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(isend, irecv, 5, MPIU_PETSCLOGDOUBLE, MPI_SUM, PetscObjectComm((PetscObject)matin))); 144826fbe8dcSKarl Rupp 14494e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 14504e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 14514e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 14524e220ebcSLois Curfman McInnes info->memory = irecv[3]; 14534e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 145498921bdaSJacob Faibussowitsch } else SETERRQ(PetscObjectComm((PetscObject)matin), PETSC_ERR_ARG_WRONG, "Unknown MatInfoType argument %d", (int)flag); 14554e220ebcSLois Curfman McInnes info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */ 14564e220ebcSLois Curfman McInnes info->fill_ratio_needed = 0; 14574e220ebcSLois Curfman McInnes info->factor_mallocs = 0; 14583ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 14590ac07820SSatish Balay } 14600ac07820SSatish Balay 146166976f2fSJacob Faibussowitsch static PetscErrorCode MatSetOption_MPIBAIJ(Mat A, MatOption op, PetscBool flg) 1462d71ae5a4SJacob Faibussowitsch { 146358667388SSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 146458667388SSatish Balay 1465d64ed03dSBarry Smith PetscFunctionBegin; 146612c028f9SKris Buschelman switch (op) { 1467512a5fc5SBarry Smith case MAT_NEW_NONZERO_LOCATIONS: 146812c028f9SKris Buschelman case MAT_NEW_NONZERO_ALLOCATION_ERR: 146928b2fa4aSMatthew Knepley case MAT_UNUSED_NONZERO_LOCATION_ERR: 1470a9817697SBarry Smith case MAT_KEEP_NONZERO_PATTERN: 147112c028f9SKris Buschelman case MAT_NEW_NONZERO_LOCATION_ERR: 147243674050SBarry Smith MatCheckPreallocated(A, 1); 14739566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->A, op, flg)); 14749566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->B, op, flg)); 147512c028f9SKris Buschelman break; 147612c028f9SKris Buschelman case MAT_ROW_ORIENTED: 147743674050SBarry Smith MatCheckPreallocated(A, 1); 14784e0d8c25SBarry Smith a->roworiented = flg; 147926fbe8dcSKarl Rupp 14809566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->A, op, flg)); 14819566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->B, op, flg)); 148212c028f9SKris Buschelman break; 1483d71ae5a4SJacob Faibussowitsch case MAT_IGNORE_OFF_PROC_ENTRIES: 1484d71ae5a4SJacob Faibussowitsch a->donotstash = flg; 1485d71ae5a4SJacob Faibussowitsch break; 148612c028f9SKris Buschelman case MAT_USE_HASH_TABLE: 14874e0d8c25SBarry Smith a->ht_flag = flg; 1488abf3b562SBarry Smith a->ht_fact = 1.39; 148912c028f9SKris Buschelman break; 149077e54ba9SKris Buschelman case MAT_SYMMETRIC: 149177e54ba9SKris Buschelman case MAT_STRUCTURALLY_SYMMETRIC: 14922188ac68SBarry Smith case MAT_HERMITIAN: 14932188ac68SBarry Smith case MAT_SYMMETRY_ETERNAL: 1494b94d7dedSBarry Smith case MAT_STRUCTURAL_SYMMETRY_ETERNAL: 1495b94d7dedSBarry Smith case MAT_SPD_ETERNAL: 1496b94d7dedSBarry Smith /* if the diagonal matrix is square it inherits some of the properties above */ 14979725ddffSPierre Jolivet if (a->A && A->rmap->n == A->cmap->n) PetscCall(MatSetOption(a->A, op, flg)); 149877e54ba9SKris Buschelman break; 1499d71ae5a4SJacob Faibussowitsch default: 1500888c827cSStefano Zampini break; 1501d64ed03dSBarry Smith } 15023ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 150358667388SSatish Balay } 150458667388SSatish Balay 150566976f2fSJacob Faibussowitsch static PetscErrorCode MatTranspose_MPIBAIJ(Mat A, MatReuse reuse, Mat *matout) 1506d71ae5a4SJacob Faibussowitsch { 15070ac07820SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)A->data; 15080ac07820SSatish Balay Mat_SeqBAIJ *Aloc; 15090ac07820SSatish Balay Mat B; 1510d0f46423SBarry Smith PetscInt M = A->rmap->N, N = A->cmap->N, *ai, *aj, i, *rvals, j, k, col; 1511d0f46423SBarry Smith PetscInt bs = A->rmap->bs, mbs = baij->mbs; 15123eda8832SBarry Smith MatScalar *a; 15130ac07820SSatish Balay 1514d64ed03dSBarry Smith PetscFunctionBegin; 15157fb60732SBarry Smith if (reuse == MAT_REUSE_MATRIX) PetscCall(MatTransposeCheckNonzeroState_Private(A, *matout)); 1516cf37664fSBarry Smith if (reuse == MAT_INITIAL_MATRIX || reuse == MAT_INPLACE_MATRIX) { 15179566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)A), &B)); 15189566063dSJacob Faibussowitsch PetscCall(MatSetSizes(B, A->cmap->n, A->rmap->n, N, M)); 15199566063dSJacob Faibussowitsch PetscCall(MatSetType(B, ((PetscObject)A)->type_name)); 15202e72b8d9SBarry Smith /* Do not know preallocation information, but must set block size */ 15219566063dSJacob Faibussowitsch PetscCall(MatMPIBAIJSetPreallocation(B, A->rmap->bs, PETSC_DECIDE, NULL, PETSC_DECIDE, NULL)); 1522fc4dec0aSBarry Smith } else { 1523fc4dec0aSBarry Smith B = *matout; 1524fc4dec0aSBarry Smith } 15250ac07820SSatish Balay 15260ac07820SSatish Balay /* copy over the A part */ 15270ac07820SSatish Balay Aloc = (Mat_SeqBAIJ *)baij->A->data; 15289371c9d4SSatish Balay ai = Aloc->i; 15299371c9d4SSatish Balay aj = Aloc->j; 15309371c9d4SSatish Balay a = Aloc->a; 15319566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(bs, &rvals)); 15320ac07820SSatish Balay 15330ac07820SSatish Balay for (i = 0; i < mbs; i++) { 1534899cda47SBarry Smith rvals[0] = bs * (baij->rstartbs + i); 153526fbe8dcSKarl Rupp for (j = 1; j < bs; j++) rvals[j] = rvals[j - 1] + 1; 15360ac07820SSatish Balay for (j = ai[i]; j < ai[i + 1]; j++) { 1537899cda47SBarry Smith col = (baij->cstartbs + aj[j]) * bs; 15380ac07820SSatish Balay for (k = 0; k < bs; k++) { 15399566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPIBAIJ(B, 1, &col, bs, rvals, a, INSERT_VALUES)); 154026fbe8dcSKarl Rupp 15419371c9d4SSatish Balay col++; 15429371c9d4SSatish Balay a += bs; 15430ac07820SSatish Balay } 15440ac07820SSatish Balay } 15450ac07820SSatish Balay } 15460ac07820SSatish Balay /* copy over the B part */ 15470ac07820SSatish Balay Aloc = (Mat_SeqBAIJ *)baij->B->data; 15489371c9d4SSatish Balay ai = Aloc->i; 15499371c9d4SSatish Balay aj = Aloc->j; 15509371c9d4SSatish Balay a = Aloc->a; 15510ac07820SSatish Balay for (i = 0; i < mbs; i++) { 1552899cda47SBarry Smith rvals[0] = bs * (baij->rstartbs + i); 155326fbe8dcSKarl Rupp for (j = 1; j < bs; j++) rvals[j] = rvals[j - 1] + 1; 15540ac07820SSatish Balay for (j = ai[i]; j < ai[i + 1]; j++) { 15550ac07820SSatish Balay col = baij->garray[aj[j]] * bs; 15560ac07820SSatish Balay for (k = 0; k < bs; k++) { 15579566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPIBAIJ(B, 1, &col, bs, rvals, a, INSERT_VALUES)); 155826fbe8dcSKarl Rupp col++; 155926fbe8dcSKarl Rupp a += bs; 15600ac07820SSatish Balay } 15610ac07820SSatish Balay } 15620ac07820SSatish Balay } 15639566063dSJacob Faibussowitsch PetscCall(PetscFree(rvals)); 15649566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY)); 15659566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY)); 15660ac07820SSatish Balay 1567cf37664fSBarry Smith if (reuse == MAT_INITIAL_MATRIX || reuse == MAT_REUSE_MATRIX) *matout = B; 156848a46eb9SPierre Jolivet else PetscCall(MatHeaderMerge(A, &B)); 15693ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 15700ac07820SSatish Balay } 15710e95ebc0SSatish Balay 157266976f2fSJacob Faibussowitsch static PetscErrorCode MatDiagonalScale_MPIBAIJ(Mat mat, Vec ll, Vec rr) 1573d71ae5a4SJacob Faibussowitsch { 157436c4a09eSSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 157536c4a09eSSatish Balay Mat a = baij->A, b = baij->B; 1576b24ad042SBarry Smith PetscInt s1, s2, s3; 15770e95ebc0SSatish Balay 1578d64ed03dSBarry Smith PetscFunctionBegin; 15799566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(mat, &s2, &s3)); 158036c4a09eSSatish Balay if (rr) { 15819566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(rr, &s1)); 15825f80ce2aSJacob Faibussowitsch PetscCheck(s1 == s3, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "right vector non-conforming local size"); 158336c4a09eSSatish Balay /* Overlap communication with computation. */ 15849566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(baij->Mvctx, rr, baij->lvec, INSERT_VALUES, SCATTER_FORWARD)); 158536c4a09eSSatish Balay } 15860e95ebc0SSatish Balay if (ll) { 15879566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(ll, &s1)); 15885f80ce2aSJacob Faibussowitsch PetscCheck(s1 == s2, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "left vector non-conforming local size"); 1589dbbe0bcdSBarry Smith PetscUseTypeMethod(b, diagonalscale, ll, NULL); 15900e95ebc0SSatish Balay } 159136c4a09eSSatish Balay /* scale the diagonal block */ 1592dbbe0bcdSBarry Smith PetscUseTypeMethod(a, diagonalscale, ll, rr); 159336c4a09eSSatish Balay 159436c4a09eSSatish Balay if (rr) { 159536c4a09eSSatish Balay /* Do a scatter end and then right scale the off-diagonal block */ 15969566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(baij->Mvctx, rr, baij->lvec, INSERT_VALUES, SCATTER_FORWARD)); 1597dbbe0bcdSBarry Smith PetscUseTypeMethod(b, diagonalscale, NULL, baij->lvec); 159836c4a09eSSatish Balay } 15993ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 16000e95ebc0SSatish Balay } 16010e95ebc0SSatish Balay 160266976f2fSJacob Faibussowitsch static PetscErrorCode MatZeroRows_MPIBAIJ(Mat A, PetscInt N, const PetscInt rows[], PetscScalar diag, Vec x, Vec b) 1603d71ae5a4SJacob Faibussowitsch { 16040ac07820SSatish Balay Mat_MPIBAIJ *l = (Mat_MPIBAIJ *)A->data; 160565a92638SMatthew G. Knepley PetscInt *lrows; 16066e520ac8SStefano Zampini PetscInt r, len; 160794342113SStefano Zampini PetscBool cong; 16080ac07820SSatish Balay 1609d64ed03dSBarry Smith PetscFunctionBegin; 16106e520ac8SStefano Zampini /* get locally owned rows */ 16119566063dSJacob Faibussowitsch PetscCall(MatZeroRowsMapLocal_Private(A, N, rows, &len, &lrows)); 1612dd8e379bSPierre Jolivet /* fix right-hand side if needed */ 161397b48c8fSBarry Smith if (x && b) { 161465a92638SMatthew G. Knepley const PetscScalar *xx; 161565a92638SMatthew G. Knepley PetscScalar *bb; 161665a92638SMatthew G. Knepley 16179566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(x, &xx)); 16189566063dSJacob Faibussowitsch PetscCall(VecGetArray(b, &bb)); 161965a92638SMatthew G. Knepley for (r = 0; r < len; ++r) bb[lrows[r]] = diag * xx[lrows[r]]; 16209566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(x, &xx)); 16219566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(b, &bb)); 162297b48c8fSBarry Smith } 162397b48c8fSBarry Smith 16240ac07820SSatish Balay /* actually zap the local rows */ 162572dacd9aSBarry Smith /* 162672dacd9aSBarry Smith Zero the required rows. If the "diagonal block" of the matrix 1627a8c7a070SBarry Smith is square and the user wishes to set the diagonal we use separate 162872dacd9aSBarry Smith code so that MatSetValues() is not called for each diagonal allocating 162972dacd9aSBarry Smith new memory, thus calling lots of mallocs and slowing things down. 163072dacd9aSBarry Smith 163172dacd9aSBarry Smith */ 16329c957beeSSatish Balay /* must zero l->B before l->A because the (diag) case below may put values into l->B*/ 16339566063dSJacob Faibussowitsch PetscCall(MatZeroRows_SeqBAIJ(l->B, len, lrows, 0.0, NULL, NULL)); 16349566063dSJacob Faibussowitsch PetscCall(MatHasCongruentLayouts(A, &cong)); 163594342113SStefano Zampini if ((diag != 0.0) && cong) { 16369566063dSJacob Faibussowitsch PetscCall(MatZeroRows_SeqBAIJ(l->A, len, lrows, diag, NULL, NULL)); 1637f4df32b1SMatthew Knepley } else if (diag != 0.0) { 16389566063dSJacob Faibussowitsch PetscCall(MatZeroRows_SeqBAIJ(l->A, len, lrows, 0.0, NULL, NULL)); 163900045ab3SPierre Jolivet PetscCheck(!((Mat_SeqBAIJ *)l->A->data)->nonew, PETSC_COMM_SELF, PETSC_ERR_SUP, "MatZeroRows() on rectangular matrices cannot be used with the Mat options MAT_NEW_NONZERO_LOCATIONS, MAT_NEW_NONZERO_LOCATION_ERR, and MAT_NEW_NONZERO_ALLOCATION_ERR"); 164065a92638SMatthew G. Knepley for (r = 0; r < len; ++r) { 164165a92638SMatthew G. Knepley const PetscInt row = lrows[r] + A->rmap->rstart; 16429566063dSJacob Faibussowitsch PetscCall(MatSetValues(A, 1, &row, 1, &row, &diag, INSERT_VALUES)); 1643a07cd24cSSatish Balay } 16449566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(A, MAT_FINAL_ASSEMBLY)); 16459566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(A, MAT_FINAL_ASSEMBLY)); 16469c957beeSSatish Balay } else { 16479566063dSJacob Faibussowitsch PetscCall(MatZeroRows_SeqBAIJ(l->A, len, lrows, 0.0, NULL, NULL)); 1648a07cd24cSSatish Balay } 16499566063dSJacob Faibussowitsch PetscCall(PetscFree(lrows)); 16504f9cfa9eSBarry Smith 16514f9cfa9eSBarry Smith /* only change matrix nonzero state if pattern was allowed to be changed */ 1652f4f49eeaSPierre Jolivet if (!((Mat_SeqBAIJ *)l->A->data)->keepnonzeropattern || !((Mat_SeqBAIJ *)l->A->data)->nonew) { 1653e56f5c9eSBarry Smith PetscObjectState state = l->A->nonzerostate + l->B->nonzerostate; 1654462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&state, &A->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)A))); 1655e56f5c9eSBarry Smith } 16563ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 16570ac07820SSatish Balay } 165872dacd9aSBarry Smith 165966976f2fSJacob Faibussowitsch static PetscErrorCode MatZeroRowsColumns_MPIBAIJ(Mat A, PetscInt N, const PetscInt rows[], PetscScalar diag, Vec x, Vec b) 1660d71ae5a4SJacob Faibussowitsch { 16616f0a72daSMatthew G. Knepley Mat_MPIBAIJ *l = (Mat_MPIBAIJ *)A->data; 16626497c311SBarry Smith PetscMPIInt n, p = 0; 1663131c27b5Sprj- PetscInt i, j, k, r, len = 0, row, col, count; 16646f0a72daSMatthew G. Knepley PetscInt *lrows, *owners = A->rmap->range; 16656f0a72daSMatthew G. Knepley PetscSFNode *rrows; 16666f0a72daSMatthew G. Knepley PetscSF sf; 16676f0a72daSMatthew G. Knepley const PetscScalar *xx; 16686f0a72daSMatthew G. Knepley PetscScalar *bb, *mask; 16696f0a72daSMatthew G. Knepley Vec xmask, lmask; 16706f0a72daSMatthew G. Knepley Mat_SeqBAIJ *baij = (Mat_SeqBAIJ *)l->B->data; 16716f0a72daSMatthew G. Knepley PetscInt bs = A->rmap->bs, bs2 = baij->bs2; 16726f0a72daSMatthew G. Knepley PetscScalar *aa; 16736f0a72daSMatthew G. Knepley 16746f0a72daSMatthew G. Knepley PetscFunctionBegin; 16756497c311SBarry Smith PetscCall(PetscMPIIntCast(A->rmap->n, &n)); 16766f0a72daSMatthew G. Knepley /* Create SF where leaves are input rows and roots are owned rows */ 16779566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(n, &lrows)); 16786f0a72daSMatthew G. Knepley for (r = 0; r < n; ++r) lrows[r] = -1; 16799566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(N, &rrows)); 16806f0a72daSMatthew G. Knepley for (r = 0; r < N; ++r) { 16816f0a72daSMatthew G. Knepley const PetscInt idx = rows[r]; 16825f80ce2aSJacob Faibussowitsch PetscCheck(idx >= 0 && A->rmap->N > idx, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row %" PetscInt_FMT " out of range [0,%" PetscInt_FMT ")", idx, A->rmap->N); 16835ba17502SJed Brown if (idx < owners[p] || owners[p + 1] <= idx) { /* short-circuit the search if the last p owns this row too */ 16849566063dSJacob Faibussowitsch PetscCall(PetscLayoutFindOwner(A->rmap, idx, &p)); 16855ba17502SJed Brown } 16866f0a72daSMatthew G. Knepley rrows[r].rank = p; 16876f0a72daSMatthew G. Knepley rrows[r].index = rows[r] - owners[p]; 16886f0a72daSMatthew G. Knepley } 16899566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)A), &sf)); 16909566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(sf, n, N, NULL, PETSC_OWN_POINTER, rrows, PETSC_OWN_POINTER)); 16916f0a72daSMatthew G. Knepley /* Collect flags for rows to be zeroed */ 16929566063dSJacob Faibussowitsch PetscCall(PetscSFReduceBegin(sf, MPIU_INT, (PetscInt *)rows, lrows, MPI_LOR)); 16939566063dSJacob Faibussowitsch PetscCall(PetscSFReduceEnd(sf, MPIU_INT, (PetscInt *)rows, lrows, MPI_LOR)); 16949566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&sf)); 16956f0a72daSMatthew G. Knepley /* Compress and put in row numbers */ 16969371c9d4SSatish Balay for (r = 0; r < n; ++r) 16979371c9d4SSatish Balay if (lrows[r] >= 0) lrows[len++] = r; 16986f0a72daSMatthew G. Knepley /* zero diagonal part of matrix */ 16999566063dSJacob Faibussowitsch PetscCall(MatZeroRowsColumns(l->A, len, lrows, diag, x, b)); 17004cf0e950SBarry Smith /* handle off-diagonal part of matrix */ 17019566063dSJacob Faibussowitsch PetscCall(MatCreateVecs(A, &xmask, NULL)); 17029566063dSJacob Faibussowitsch PetscCall(VecDuplicate(l->lvec, &lmask)); 17039566063dSJacob Faibussowitsch PetscCall(VecGetArray(xmask, &bb)); 17046f0a72daSMatthew G. Knepley for (i = 0; i < len; i++) bb[lrows[i]] = 1; 17059566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(xmask, &bb)); 17069566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(l->Mvctx, xmask, lmask, ADD_VALUES, SCATTER_FORWARD)); 17079566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(l->Mvctx, xmask, lmask, ADD_VALUES, SCATTER_FORWARD)); 17089566063dSJacob Faibussowitsch PetscCall(VecDestroy(&xmask)); 17096f0a72daSMatthew G. Knepley if (x) { 17109566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(l->Mvctx, x, l->lvec, INSERT_VALUES, SCATTER_FORWARD)); 17119566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(l->Mvctx, x, l->lvec, INSERT_VALUES, SCATTER_FORWARD)); 17129566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(l->lvec, &xx)); 17139566063dSJacob Faibussowitsch PetscCall(VecGetArray(b, &bb)); 17146f0a72daSMatthew G. Knepley } 17159566063dSJacob Faibussowitsch PetscCall(VecGetArray(lmask, &mask)); 17164cf0e950SBarry Smith /* remove zeroed rows of off-diagonal matrix */ 17176f0a72daSMatthew G. Knepley for (i = 0; i < len; ++i) { 17186f0a72daSMatthew G. Knepley row = lrows[i]; 17196f0a72daSMatthew G. Knepley count = (baij->i[row / bs + 1] - baij->i[row / bs]) * bs; 1720835f2295SStefano Zampini aa = baij->a + baij->i[row / bs] * bs2 + (row % bs); 17216f0a72daSMatthew G. Knepley for (k = 0; k < count; ++k) { 17226f0a72daSMatthew G. Knepley aa[0] = 0.0; 17236f0a72daSMatthew G. Knepley aa += bs; 17246f0a72daSMatthew G. Knepley } 17256f0a72daSMatthew G. Knepley } 17266f0a72daSMatthew G. Knepley /* loop over all elements of off process part of matrix zeroing removed columns*/ 17276f0a72daSMatthew G. Knepley for (i = 0; i < l->B->rmap->N; ++i) { 17286f0a72daSMatthew G. Knepley row = i / bs; 17296f0a72daSMatthew G. Knepley for (j = baij->i[row]; j < baij->i[row + 1]; ++j) { 17306f0a72daSMatthew G. Knepley for (k = 0; k < bs; ++k) { 17316f0a72daSMatthew G. Knepley col = bs * baij->j[j] + k; 17326f0a72daSMatthew G. Knepley if (PetscAbsScalar(mask[col])) { 1733835f2295SStefano Zampini aa = baij->a + j * bs2 + (i % bs) + bs * k; 173489ae1891SBarry Smith if (x) bb[i] -= aa[0] * xx[col]; 17356f0a72daSMatthew G. Knepley aa[0] = 0.0; 17366f0a72daSMatthew G. Knepley } 17376f0a72daSMatthew G. Knepley } 17386f0a72daSMatthew G. Knepley } 17396f0a72daSMatthew G. Knepley } 17406f0a72daSMatthew G. Knepley if (x) { 17419566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(b, &bb)); 17429566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(l->lvec, &xx)); 17436f0a72daSMatthew G. Knepley } 17449566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(lmask, &mask)); 17459566063dSJacob Faibussowitsch PetscCall(VecDestroy(&lmask)); 17469566063dSJacob Faibussowitsch PetscCall(PetscFree(lrows)); 17474f9cfa9eSBarry Smith 17484f9cfa9eSBarry Smith /* only change matrix nonzero state if pattern was allowed to be changed */ 1749f4f49eeaSPierre Jolivet if (!((Mat_SeqBAIJ *)l->A->data)->nonew) { 17504f9cfa9eSBarry Smith PetscObjectState state = l->A->nonzerostate + l->B->nonzerostate; 1751462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&state, &A->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)A))); 17524f9cfa9eSBarry Smith } 17533ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 17546f0a72daSMatthew G. Knepley } 17556f0a72daSMatthew G. Knepley 175666976f2fSJacob Faibussowitsch static PetscErrorCode MatSetUnfactored_MPIBAIJ(Mat A) 1757d71ae5a4SJacob Faibussowitsch { 1758bb5a7306SBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 1759d64ed03dSBarry Smith 1760d64ed03dSBarry Smith PetscFunctionBegin; 17619566063dSJacob Faibussowitsch PetscCall(MatSetUnfactored(a->A)); 17623ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1763bb5a7306SBarry Smith } 1764bb5a7306SBarry Smith 17656849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIBAIJ(Mat, MatDuplicateOption, Mat *); 17660ac07820SSatish Balay 176766976f2fSJacob Faibussowitsch static PetscErrorCode MatEqual_MPIBAIJ(Mat A, Mat B, PetscBool *flag) 1768d71ae5a4SJacob Faibussowitsch { 17697fc3c18eSBarry Smith Mat_MPIBAIJ *matB = (Mat_MPIBAIJ *)B->data, *matA = (Mat_MPIBAIJ *)A->data; 17707fc3c18eSBarry Smith Mat a, b, c, d; 1771ace3abfcSBarry Smith PetscBool flg; 17727fc3c18eSBarry Smith 17737fc3c18eSBarry Smith PetscFunctionBegin; 17749371c9d4SSatish Balay a = matA->A; 17759371c9d4SSatish Balay b = matA->B; 17769371c9d4SSatish Balay c = matB->A; 17779371c9d4SSatish Balay d = matB->B; 17787fc3c18eSBarry Smith 17799566063dSJacob Faibussowitsch PetscCall(MatEqual(a, c, &flg)); 178048a46eb9SPierre Jolivet if (flg) PetscCall(MatEqual(b, d, &flg)); 17815440e5dcSBarry Smith PetscCallMPI(MPIU_Allreduce(&flg, flag, 1, MPI_C_BOOL, MPI_LAND, PetscObjectComm((PetscObject)A))); 17823ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 17837fc3c18eSBarry Smith } 17847fc3c18eSBarry Smith 178566976f2fSJacob Faibussowitsch static PetscErrorCode MatCopy_MPIBAIJ(Mat A, Mat B, MatStructure str) 1786d71ae5a4SJacob Faibussowitsch { 17873c896bc6SHong Zhang Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 17883c896bc6SHong Zhang Mat_MPIBAIJ *b = (Mat_MPIBAIJ *)B->data; 17893c896bc6SHong Zhang 17903c896bc6SHong Zhang PetscFunctionBegin; 17913c896bc6SHong Zhang /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */ 17923c896bc6SHong Zhang if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) { 17939566063dSJacob Faibussowitsch PetscCall(MatCopy_Basic(A, B, str)); 17943c896bc6SHong Zhang } else { 17959566063dSJacob Faibussowitsch PetscCall(MatCopy(a->A, b->A, str)); 17969566063dSJacob Faibussowitsch PetscCall(MatCopy(a->B, b->B, str)); 17973c896bc6SHong Zhang } 17989566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)B)); 17993ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 18003c896bc6SHong Zhang } 1801273d9f13SBarry Smith 1802d71ae5a4SJacob Faibussowitsch PetscErrorCode MatAXPYGetPreallocation_MPIBAIJ(Mat Y, const PetscInt *yltog, Mat X, const PetscInt *xltog, PetscInt *nnz) 1803d71ae5a4SJacob Faibussowitsch { 1804001ddc4fSHong Zhang PetscInt bs = Y->rmap->bs, m = Y->rmap->N / bs; 18054de5dceeSHong Zhang Mat_SeqBAIJ *x = (Mat_SeqBAIJ *)X->data; 18064de5dceeSHong Zhang Mat_SeqBAIJ *y = (Mat_SeqBAIJ *)Y->data; 18074de5dceeSHong Zhang 18084de5dceeSHong Zhang PetscFunctionBegin; 18099566063dSJacob Faibussowitsch PetscCall(MatAXPYGetPreallocation_MPIX_private(m, x->i, x->j, xltog, y->i, y->j, yltog, nnz)); 18103ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 18114de5dceeSHong Zhang } 18124de5dceeSHong Zhang 181366976f2fSJacob Faibussowitsch static PetscErrorCode MatAXPY_MPIBAIJ(Mat Y, PetscScalar a, Mat X, MatStructure str) 1814d71ae5a4SJacob Faibussowitsch { 18154fe895cdSHong Zhang Mat_MPIBAIJ *xx = (Mat_MPIBAIJ *)X->data, *yy = (Mat_MPIBAIJ *)Y->data; 18164fe895cdSHong Zhang PetscBLASInt bnz, one = 1; 18174fe895cdSHong Zhang Mat_SeqBAIJ *x, *y; 1818b31f67cfSBarry Smith PetscInt bs2 = Y->rmap->bs * Y->rmap->bs; 18194fe895cdSHong Zhang 18204fe895cdSHong Zhang PetscFunctionBegin; 18214fe895cdSHong Zhang if (str == SAME_NONZERO_PATTERN) { 18224fe895cdSHong Zhang PetscScalar alpha = a; 18234fe895cdSHong Zhang x = (Mat_SeqBAIJ *)xx->A->data; 18244fe895cdSHong Zhang y = (Mat_SeqBAIJ *)yy->A->data; 18259566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(x->nz * bs2, &bnz)); 1826792fecdfSBarry Smith PetscCallBLAS("BLASaxpy", BLASaxpy_(&bnz, &alpha, x->a, &one, y->a, &one)); 18274fe895cdSHong Zhang x = (Mat_SeqBAIJ *)xx->B->data; 18284fe895cdSHong Zhang y = (Mat_SeqBAIJ *)yy->B->data; 18299566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(x->nz * bs2, &bnz)); 1830792fecdfSBarry Smith PetscCallBLAS("BLASaxpy", BLASaxpy_(&bnz, &alpha, x->a, &one, y->a, &one)); 18319566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)Y)); 1832ab784542SHong Zhang } else if (str == SUBSET_NONZERO_PATTERN) { /* nonzeros of X is a subset of Y's */ 18339566063dSJacob Faibussowitsch PetscCall(MatAXPY_Basic(Y, a, X, str)); 18344fe895cdSHong Zhang } else { 18354de5dceeSHong Zhang Mat B; 18364de5dceeSHong Zhang PetscInt *nnz_d, *nnz_o, bs = Y->rmap->bs; 18379566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(yy->A->rmap->N, &nnz_d)); 18389566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(yy->B->rmap->N, &nnz_o)); 18399566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)Y), &B)); 18409566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)B, ((PetscObject)Y)->name)); 18419566063dSJacob Faibussowitsch PetscCall(MatSetSizes(B, Y->rmap->n, Y->cmap->n, Y->rmap->N, Y->cmap->N)); 18429566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizesFromMats(B, Y, Y)); 18439566063dSJacob Faibussowitsch PetscCall(MatSetType(B, MATMPIBAIJ)); 18449566063dSJacob Faibussowitsch PetscCall(MatAXPYGetPreallocation_SeqBAIJ(yy->A, xx->A, nnz_d)); 18459566063dSJacob Faibussowitsch PetscCall(MatAXPYGetPreallocation_MPIBAIJ(yy->B, yy->garray, xx->B, xx->garray, nnz_o)); 18469566063dSJacob Faibussowitsch PetscCall(MatMPIBAIJSetPreallocation(B, bs, 0, nnz_d, 0, nnz_o)); 18474de5dceeSHong Zhang /* MatAXPY_BasicWithPreallocation() for BAIJ matrix is much slower than AIJ, even for bs=1 ! */ 18489566063dSJacob Faibussowitsch PetscCall(MatAXPY_BasicWithPreallocation(B, Y, a, X, str)); 18499566063dSJacob Faibussowitsch PetscCall(MatHeaderMerge(Y, &B)); 18509566063dSJacob Faibussowitsch PetscCall(PetscFree(nnz_d)); 18519566063dSJacob Faibussowitsch PetscCall(PetscFree(nnz_o)); 18524fe895cdSHong Zhang } 18533ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 18544fe895cdSHong Zhang } 18554fe895cdSHong Zhang 185666976f2fSJacob Faibussowitsch static PetscErrorCode MatConjugate_MPIBAIJ(Mat mat) 1857d71ae5a4SJacob Faibussowitsch { 18585f80ce2aSJacob Faibussowitsch PetscFunctionBegin; 18595f80ce2aSJacob Faibussowitsch if (PetscDefined(USE_COMPLEX)) { 18602726fb6dSPierre Jolivet Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)mat->data; 18612726fb6dSPierre Jolivet 18629566063dSJacob Faibussowitsch PetscCall(MatConjugate_SeqBAIJ(a->A)); 18639566063dSJacob Faibussowitsch PetscCall(MatConjugate_SeqBAIJ(a->B)); 18645f80ce2aSJacob Faibussowitsch } 18653ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 18662726fb6dSPierre Jolivet } 18672726fb6dSPierre Jolivet 186866976f2fSJacob Faibussowitsch static PetscErrorCode MatRealPart_MPIBAIJ(Mat A) 1869d71ae5a4SJacob Faibussowitsch { 187099cafbc1SBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 187199cafbc1SBarry Smith 187299cafbc1SBarry Smith PetscFunctionBegin; 18739566063dSJacob Faibussowitsch PetscCall(MatRealPart(a->A)); 18749566063dSJacob Faibussowitsch PetscCall(MatRealPart(a->B)); 18753ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 187699cafbc1SBarry Smith } 187799cafbc1SBarry Smith 187866976f2fSJacob Faibussowitsch static PetscErrorCode MatImaginaryPart_MPIBAIJ(Mat A) 1879d71ae5a4SJacob Faibussowitsch { 188099cafbc1SBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 188199cafbc1SBarry Smith 188299cafbc1SBarry Smith PetscFunctionBegin; 18839566063dSJacob Faibussowitsch PetscCall(MatImaginaryPart(a->A)); 18849566063dSJacob Faibussowitsch PetscCall(MatImaginaryPart(a->B)); 18853ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 188699cafbc1SBarry Smith } 188799cafbc1SBarry Smith 188866976f2fSJacob Faibussowitsch static PetscErrorCode MatCreateSubMatrix_MPIBAIJ(Mat mat, IS isrow, IS iscol, MatReuse call, Mat *newmat) 1889d71ae5a4SJacob Faibussowitsch { 18904aa3045dSJed Brown IS iscol_local; 18914aa3045dSJed Brown PetscInt csize; 18924aa3045dSJed Brown 18934aa3045dSJed Brown PetscFunctionBegin; 18949566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol, &csize)); 1895b79d0421SJed Brown if (call == MAT_REUSE_MATRIX) { 18969566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*newmat, "ISAllGather", (PetscObject *)&iscol_local)); 18975f80ce2aSJacob Faibussowitsch PetscCheck(iscol_local, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Submatrix passed in was not used before, cannot reuse"); 1898b79d0421SJed Brown } else { 18999566063dSJacob Faibussowitsch PetscCall(ISAllGather(iscol, &iscol_local)); 1900b79d0421SJed Brown } 1901fdfbdca6SPierre Jolivet PetscCall(MatCreateSubMatrix_MPIBAIJ_Private(mat, isrow, iscol_local, csize, call, newmat, PETSC_FALSE)); 1902b79d0421SJed Brown if (call == MAT_INITIAL_MATRIX) { 19039566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)*newmat, "ISAllGather", (PetscObject)iscol_local)); 19049566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscol_local)); 1905b79d0421SJed Brown } 19063ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 19074aa3045dSJed Brown } 190817df9f7cSHong Zhang 190982094794SBarry Smith /* 191082094794SBarry Smith Not great since it makes two copies of the submatrix, first an SeqBAIJ 191182094794SBarry Smith in local and then by concatenating the local matrices the end result. 19127dae84e0SHong Zhang Writing it directly would be much like MatCreateSubMatrices_MPIBAIJ(). 19138f46ffcaSHong Zhang This routine is used for BAIJ and SBAIJ matrices (unfortunate dependency). 191482094794SBarry Smith */ 1915fdfbdca6SPierre Jolivet PetscErrorCode MatCreateSubMatrix_MPIBAIJ_Private(Mat mat, IS isrow, IS iscol, PetscInt csize, MatReuse call, Mat *newmat, PetscBool sym) 1916d71ae5a4SJacob Faibussowitsch { 191782094794SBarry Smith PetscMPIInt rank, size; 191882094794SBarry Smith PetscInt i, m, n, rstart, row, rend, nz, *cwork, j, bs; 1919c9ffca76SHong Zhang PetscInt *ii, *jj, nlocal, *dlens, *olens, dlen, olen, jend, mglobal; 192029dcf524SDmitry Karpeev Mat M, Mreuse; 192182094794SBarry Smith MatScalar *vwork, *aa; 1922ce94432eSBarry Smith MPI_Comm comm; 192329dcf524SDmitry Karpeev IS isrow_new, iscol_new; 192482094794SBarry Smith Mat_SeqBAIJ *aij; 192582094794SBarry Smith 192682094794SBarry Smith PetscFunctionBegin; 19279566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)mat, &comm)); 19289566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 19299566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 193029dcf524SDmitry Karpeev /* The compression and expansion should be avoided. Doesn't point 193129dcf524SDmitry Karpeev out errors, might change the indices, hence buggey */ 19329566063dSJacob Faibussowitsch PetscCall(ISCompressIndicesGeneral(mat->rmap->N, mat->rmap->n, mat->rmap->bs, 1, &isrow, &isrow_new)); 1933864bd19bSPierre Jolivet if (isrow == iscol) { 1934864bd19bSPierre Jolivet iscol_new = isrow_new; 1935864bd19bSPierre Jolivet PetscCall(PetscObjectReference((PetscObject)iscol_new)); 1936864bd19bSPierre Jolivet } else PetscCall(ISCompressIndicesGeneral(mat->cmap->N, mat->cmap->n, mat->cmap->bs, 1, &iscol, &iscol_new)); 193782094794SBarry Smith 193882094794SBarry Smith if (call == MAT_REUSE_MATRIX) { 19399566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*newmat, "SubMatrix", (PetscObject *)&Mreuse)); 19405f80ce2aSJacob Faibussowitsch PetscCheck(Mreuse, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Submatrix passed in was not used before, cannot reuse"); 1941fdfbdca6SPierre Jolivet PetscCall(MatCreateSubMatrices_MPIBAIJ_local(mat, 1, &isrow_new, &iscol_new, MAT_REUSE_MATRIX, &Mreuse, sym)); 194282094794SBarry Smith } else { 1943fdfbdca6SPierre Jolivet PetscCall(MatCreateSubMatrices_MPIBAIJ_local(mat, 1, &isrow_new, &iscol_new, MAT_INITIAL_MATRIX, &Mreuse, sym)); 194482094794SBarry Smith } 19459566063dSJacob Faibussowitsch PetscCall(ISDestroy(&isrow_new)); 19469566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscol_new)); 194782094794SBarry Smith /* 194882094794SBarry Smith m - number of local rows 194982094794SBarry Smith n - number of columns (same on all processors) 195082094794SBarry Smith rstart - first row in new global matrix generated 195182094794SBarry Smith */ 19529566063dSJacob Faibussowitsch PetscCall(MatGetBlockSize(mat, &bs)); 19539566063dSJacob Faibussowitsch PetscCall(MatGetSize(Mreuse, &m, &n)); 195482094794SBarry Smith m = m / bs; 195582094794SBarry Smith n = n / bs; 195682094794SBarry Smith 195782094794SBarry Smith if (call == MAT_INITIAL_MATRIX) { 195857508eceSPierre Jolivet aij = (Mat_SeqBAIJ *)Mreuse->data; 195982094794SBarry Smith ii = aij->i; 196082094794SBarry Smith jj = aij->j; 196182094794SBarry Smith 196282094794SBarry Smith /* 196382094794SBarry Smith Determine the number of non-zeros in the diagonal and off-diagonal 196482094794SBarry Smith portions of the matrix in order to do correct preallocation 196582094794SBarry Smith */ 196682094794SBarry Smith 196782094794SBarry Smith /* first get start and end of "diagonal" columns */ 196882094794SBarry Smith if (csize == PETSC_DECIDE) { 19699566063dSJacob Faibussowitsch PetscCall(ISGetSize(isrow, &mglobal)); 197082094794SBarry Smith if (mglobal == n * bs) { /* square matrix */ 197182094794SBarry Smith nlocal = m; 197282094794SBarry Smith } else { 197382094794SBarry Smith nlocal = n / size + ((n % size) > rank); 197482094794SBarry Smith } 197582094794SBarry Smith } else { 197682094794SBarry Smith nlocal = csize / bs; 197782094794SBarry Smith } 19789566063dSJacob Faibussowitsch PetscCallMPI(MPI_Scan(&nlocal, &rend, 1, MPIU_INT, MPI_SUM, comm)); 197982094794SBarry Smith rstart = rend - nlocal; 1980aed4548fSBarry Smith PetscCheck(rank != size - 1 || rend == n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Local column sizes %" PetscInt_FMT " do not add up to total number of columns %" PetscInt_FMT, rend, n); 198182094794SBarry Smith 198282094794SBarry Smith /* next, compute all the lengths */ 19839566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(m + 1, &dlens, m + 1, &olens)); 198482094794SBarry Smith for (i = 0; i < m; i++) { 198582094794SBarry Smith jend = ii[i + 1] - ii[i]; 198682094794SBarry Smith olen = 0; 198782094794SBarry Smith dlen = 0; 198882094794SBarry Smith for (j = 0; j < jend; j++) { 198982094794SBarry Smith if (*jj < rstart || *jj >= rend) olen++; 199082094794SBarry Smith else dlen++; 199182094794SBarry Smith jj++; 199282094794SBarry Smith } 199382094794SBarry Smith olens[i] = olen; 199482094794SBarry Smith dlens[i] = dlen; 199582094794SBarry Smith } 19969566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, &M)); 19979566063dSJacob Faibussowitsch PetscCall(MatSetSizes(M, bs * m, bs * nlocal, PETSC_DECIDE, bs * n)); 1998fdfbdca6SPierre Jolivet PetscCall(MatSetType(M, sym ? ((PetscObject)mat)->type_name : MATMPIBAIJ)); 19999566063dSJacob Faibussowitsch PetscCall(MatMPIBAIJSetPreallocation(M, bs, 0, dlens, 0, olens)); 20009566063dSJacob Faibussowitsch PetscCall(MatMPISBAIJSetPreallocation(M, bs, 0, dlens, 0, olens)); 20019566063dSJacob Faibussowitsch PetscCall(PetscFree2(dlens, olens)); 200282094794SBarry Smith } else { 200382094794SBarry Smith PetscInt ml, nl; 200482094794SBarry Smith 200582094794SBarry Smith M = *newmat; 20069566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(M, &ml, &nl)); 20075f80ce2aSJacob Faibussowitsch PetscCheck(ml == m, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Previous matrix must be same size/layout as request"); 20089566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(M)); 200982094794SBarry Smith /* 201082094794SBarry Smith The next two lines are needed so we may call MatSetValues_MPIAIJ() below directly, 201182094794SBarry Smith rather than the slower MatSetValues(). 201282094794SBarry Smith */ 201382094794SBarry Smith M->was_assembled = PETSC_TRUE; 201482094794SBarry Smith M->assembled = PETSC_FALSE; 201582094794SBarry Smith } 20169566063dSJacob Faibussowitsch PetscCall(MatSetOption(M, MAT_ROW_ORIENTED, PETSC_FALSE)); 20179566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(M, &rstart, &rend)); 201857508eceSPierre Jolivet aij = (Mat_SeqBAIJ *)Mreuse->data; 201982094794SBarry Smith ii = aij->i; 202082094794SBarry Smith jj = aij->j; 202182094794SBarry Smith aa = aij->a; 202282094794SBarry Smith for (i = 0; i < m; i++) { 202382094794SBarry Smith row = rstart / bs + i; 202482094794SBarry Smith nz = ii[i + 1] - ii[i]; 20259371c9d4SSatish Balay cwork = jj; 20268e3a54c0SPierre Jolivet jj = PetscSafePointerPlusOffset(jj, nz); 20279371c9d4SSatish Balay vwork = aa; 20288e3a54c0SPierre Jolivet aa = PetscSafePointerPlusOffset(aa, nz * bs * bs); 20299566063dSJacob Faibussowitsch PetscCall(MatSetValuesBlocked_MPIBAIJ(M, 1, &row, nz, cwork, vwork, INSERT_VALUES)); 203082094794SBarry Smith } 203182094794SBarry Smith 20329566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(M, MAT_FINAL_ASSEMBLY)); 20339566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(M, MAT_FINAL_ASSEMBLY)); 203482094794SBarry Smith *newmat = M; 203582094794SBarry Smith 203682094794SBarry Smith /* save submatrix used in processor for next request */ 203782094794SBarry Smith if (call == MAT_INITIAL_MATRIX) { 20389566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)M, "SubMatrix", (PetscObject)Mreuse)); 20399566063dSJacob Faibussowitsch PetscCall(PetscObjectDereference((PetscObject)Mreuse)); 204082094794SBarry Smith } 20413ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 204282094794SBarry Smith } 204382094794SBarry Smith 204466976f2fSJacob Faibussowitsch static PetscErrorCode MatPermute_MPIBAIJ(Mat A, IS rowp, IS colp, Mat *B) 2045d71ae5a4SJacob Faibussowitsch { 204682094794SBarry Smith MPI_Comm comm, pcomm; 2047a0a83eb5SRémi Lacroix PetscInt clocal_size, nrows; 204882094794SBarry Smith const PetscInt *rows; 2049dbf0e21dSBarry Smith PetscMPIInt size; 2050a0a83eb5SRémi Lacroix IS crowp, lcolp; 205182094794SBarry Smith 205282094794SBarry Smith PetscFunctionBegin; 20539566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)A, &comm)); 205482094794SBarry Smith /* make a collective version of 'rowp' */ 20559566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)rowp, &pcomm)); 205682094794SBarry Smith if (pcomm == comm) { 205782094794SBarry Smith crowp = rowp; 205882094794SBarry Smith } else { 20599566063dSJacob Faibussowitsch PetscCall(ISGetSize(rowp, &nrows)); 20609566063dSJacob Faibussowitsch PetscCall(ISGetIndices(rowp, &rows)); 20619566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(comm, nrows, rows, PETSC_COPY_VALUES, &crowp)); 20629566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(rowp, &rows)); 206382094794SBarry Smith } 20649566063dSJacob Faibussowitsch PetscCall(ISSetPermutation(crowp)); 2065a0a83eb5SRémi Lacroix /* make a local version of 'colp' */ 20669566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)colp, &pcomm)); 20679566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(pcomm, &size)); 2068dbf0e21dSBarry Smith if (size == 1) { 206982094794SBarry Smith lcolp = colp; 207082094794SBarry Smith } else { 20719566063dSJacob Faibussowitsch PetscCall(ISAllGather(colp, &lcolp)); 207282094794SBarry Smith } 20739566063dSJacob Faibussowitsch PetscCall(ISSetPermutation(lcolp)); 207475f6568bSJed Brown /* now we just get the submatrix */ 20759566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(A, NULL, &clocal_size)); 2076fdfbdca6SPierre Jolivet PetscCall(MatCreateSubMatrix_MPIBAIJ_Private(A, crowp, lcolp, clocal_size, MAT_INITIAL_MATRIX, B, PETSC_FALSE)); 2077a0a83eb5SRémi Lacroix /* clean up */ 207848a46eb9SPierre Jolivet if (pcomm != comm) PetscCall(ISDestroy(&crowp)); 207948a46eb9SPierre Jolivet if (size > 1) PetscCall(ISDestroy(&lcolp)); 20803ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 208182094794SBarry Smith } 208282094794SBarry Smith 208366976f2fSJacob Faibussowitsch static PetscErrorCode MatGetGhosts_MPIBAIJ(Mat mat, PetscInt *nghosts, const PetscInt *ghosts[]) 2084d71ae5a4SJacob Faibussowitsch { 20858c7482ecSBarry Smith Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 20868c7482ecSBarry Smith Mat_SeqBAIJ *B = (Mat_SeqBAIJ *)baij->B->data; 20878c7482ecSBarry Smith 20888c7482ecSBarry Smith PetscFunctionBegin; 208926fbe8dcSKarl Rupp if (nghosts) *nghosts = B->nbs; 209026fbe8dcSKarl Rupp if (ghosts) *ghosts = baij->garray; 20913ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 20928c7482ecSBarry Smith } 20938c7482ecSBarry Smith 209466976f2fSJacob Faibussowitsch static PetscErrorCode MatGetSeqNonzeroStructure_MPIBAIJ(Mat A, Mat *newmat) 2095d71ae5a4SJacob Faibussowitsch { 2096f6d58c54SBarry Smith Mat B; 2097f6d58c54SBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 2098f6d58c54SBarry Smith Mat_SeqBAIJ *ad = (Mat_SeqBAIJ *)a->A->data, *bd = (Mat_SeqBAIJ *)a->B->data; 2099f6d58c54SBarry Smith Mat_SeqAIJ *b; 2100f4259b30SLisandro Dalcin PetscMPIInt size, rank, *recvcounts = NULL, *displs = NULL; 2101f6d58c54SBarry Smith PetscInt sendcount, i, *rstarts = A->rmap->range, n, cnt, j, bs = A->rmap->bs; 2102f6d58c54SBarry Smith PetscInt m, *garray = a->garray, *lens, *jsendbuf, *a_jsendbuf, *b_jsendbuf; 2103f6d58c54SBarry Smith 2104f6d58c54SBarry Smith PetscFunctionBegin; 21059566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)A), &size)); 21069566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)A), &rank)); 2107f6d58c54SBarry Smith 21082ef1f0ffSBarry Smith /* Tell every processor the number of nonzeros per row */ 21099566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(A->rmap->N / bs, &lens)); 2110ad540459SPierre Jolivet for (i = A->rmap->rstart / bs; i < A->rmap->rend / bs; i++) lens[i] = ad->i[i - A->rmap->rstart / bs + 1] - ad->i[i - A->rmap->rstart / bs] + bd->i[i - A->rmap->rstart / bs + 1] - bd->i[i - A->rmap->rstart / bs]; 21119566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(2 * size, &recvcounts)); 2112f6d58c54SBarry Smith displs = recvcounts + size; 2113f6d58c54SBarry Smith for (i = 0; i < size; i++) { 21146497c311SBarry Smith PetscCall(PetscMPIIntCast(A->rmap->range[i + 1] / bs - A->rmap->range[i] / bs, &recvcounts[i])); 21156497c311SBarry Smith PetscCall(PetscMPIIntCast(A->rmap->range[i] / bs, &displs[i])); 2116f6d58c54SBarry Smith } 21179566063dSJacob Faibussowitsch PetscCallMPI(MPI_Allgatherv(MPI_IN_PLACE, 0, MPI_DATATYPE_NULL, lens, recvcounts, displs, MPIU_INT, PetscObjectComm((PetscObject)A))); 21182ef1f0ffSBarry Smith /* Create the sequential matrix of the same type as the local block diagonal */ 21199566063dSJacob Faibussowitsch PetscCall(MatCreate(PETSC_COMM_SELF, &B)); 21209566063dSJacob Faibussowitsch PetscCall(MatSetSizes(B, A->rmap->N / bs, A->cmap->N / bs, PETSC_DETERMINE, PETSC_DETERMINE)); 21219566063dSJacob Faibussowitsch PetscCall(MatSetType(B, MATSEQAIJ)); 21229566063dSJacob Faibussowitsch PetscCall(MatSeqAIJSetPreallocation(B, 0, lens)); 2123f6d58c54SBarry Smith b = (Mat_SeqAIJ *)B->data; 2124f6d58c54SBarry Smith 21252ef1f0ffSBarry Smith /* Copy my part of matrix column indices over */ 2126f6d58c54SBarry Smith sendcount = ad->nz + bd->nz; 2127f6d58c54SBarry Smith jsendbuf = b->j + b->i[rstarts[rank] / bs]; 2128f6d58c54SBarry Smith a_jsendbuf = ad->j; 2129f6d58c54SBarry Smith b_jsendbuf = bd->j; 2130f6d58c54SBarry Smith n = A->rmap->rend / bs - A->rmap->rstart / bs; 2131f6d58c54SBarry Smith cnt = 0; 2132f6d58c54SBarry Smith for (i = 0; i < n; i++) { 2133f6d58c54SBarry Smith /* put in lower diagonal portion */ 2134f6d58c54SBarry Smith m = bd->i[i + 1] - bd->i[i]; 2135f6d58c54SBarry Smith while (m > 0) { 2136f6d58c54SBarry Smith /* is it above diagonal (in bd (compressed) numbering) */ 2137f6d58c54SBarry Smith if (garray[*b_jsendbuf] > A->rmap->rstart / bs + i) break; 2138f6d58c54SBarry Smith jsendbuf[cnt++] = garray[*b_jsendbuf++]; 2139f6d58c54SBarry Smith m--; 2140f6d58c54SBarry Smith } 2141f6d58c54SBarry Smith 2142f6d58c54SBarry Smith /* put in diagonal portion */ 2143ad540459SPierre Jolivet for (j = ad->i[i]; j < ad->i[i + 1]; j++) jsendbuf[cnt++] = A->rmap->rstart / bs + *a_jsendbuf++; 2144f6d58c54SBarry Smith 2145f6d58c54SBarry Smith /* put in upper diagonal portion */ 2146ad540459SPierre Jolivet while (m-- > 0) jsendbuf[cnt++] = garray[*b_jsendbuf++]; 2147f6d58c54SBarry Smith } 21485f80ce2aSJacob Faibussowitsch PetscCheck(cnt == sendcount, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Corrupted PETSc matrix: nz given %" PetscInt_FMT " actual nz %" PetscInt_FMT, sendcount, cnt); 2149f6d58c54SBarry Smith 21502ef1f0ffSBarry Smith /* Gather all column indices to all processors */ 2151f6d58c54SBarry Smith for (i = 0; i < size; i++) { 2152f6d58c54SBarry Smith recvcounts[i] = 0; 2153ad540459SPierre Jolivet for (j = A->rmap->range[i] / bs; j < A->rmap->range[i + 1] / bs; j++) recvcounts[i] += lens[j]; 2154f6d58c54SBarry Smith } 2155f6d58c54SBarry Smith displs[0] = 0; 2156ad540459SPierre Jolivet for (i = 1; i < size; i++) displs[i] = displs[i - 1] + recvcounts[i - 1]; 21579566063dSJacob Faibussowitsch PetscCallMPI(MPI_Allgatherv(MPI_IN_PLACE, 0, MPI_DATATYPE_NULL, b->j, recvcounts, displs, MPIU_INT, PetscObjectComm((PetscObject)A))); 21585804573cSPierre Jolivet /* Assemble the matrix into usable form (note numerical values not yet set) */ 2159f6d58c54SBarry Smith /* set the b->ilen (length of each row) values */ 21609566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(b->ilen, lens, A->rmap->N / bs)); 2161f6d58c54SBarry Smith /* set the b->i indices */ 2162f6d58c54SBarry Smith b->i[0] = 0; 2163ad540459SPierre Jolivet for (i = 1; i <= A->rmap->N / bs; i++) b->i[i] = b->i[i - 1] + lens[i - 1]; 21649566063dSJacob Faibussowitsch PetscCall(PetscFree(lens)); 21659566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY)); 21669566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY)); 21679566063dSJacob Faibussowitsch PetscCall(PetscFree(recvcounts)); 2168f6d58c54SBarry Smith 2169b94d7dedSBarry Smith PetscCall(MatPropagateSymmetryOptions(A, B)); 2170f6d58c54SBarry Smith *newmat = B; 21713ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2172f6d58c54SBarry Smith } 2173f6d58c54SBarry Smith 217466976f2fSJacob Faibussowitsch static PetscErrorCode MatSOR_MPIBAIJ(Mat matin, Vec bb, PetscReal omega, MatSORType flag, PetscReal fshift, PetscInt its, PetscInt lits, Vec xx) 2175d71ae5a4SJacob Faibussowitsch { 2176b1a666ecSBarry Smith Mat_MPIBAIJ *mat = (Mat_MPIBAIJ *)matin->data; 2177f4259b30SLisandro Dalcin Vec bb1 = NULL; 2178b1a666ecSBarry Smith 2179b1a666ecSBarry Smith PetscFunctionBegin; 2180b1a666ecSBarry Smith if (flag == SOR_APPLY_UPPER) { 21819566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx)); 21823ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2183b1a666ecSBarry Smith } 2184b1a666ecSBarry Smith 218548a46eb9SPierre Jolivet if (its > 1 || ~flag & SOR_ZERO_INITIAL_GUESS) PetscCall(VecDuplicate(bb, &bb1)); 21864e980039SJed Brown 2187b1a666ecSBarry Smith if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP) { 2188b1a666ecSBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 21899566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx)); 2190b1a666ecSBarry Smith its--; 2191b1a666ecSBarry Smith } 2192b1a666ecSBarry Smith 2193b1a666ecSBarry Smith while (its--) { 21949566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 21959566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 2196b1a666ecSBarry Smith 2197b1a666ecSBarry Smith /* update rhs: bb1 = bb - B*x */ 21989566063dSJacob Faibussowitsch PetscCall(VecScale(mat->lvec, -1.0)); 21999566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->multadd)(mat->B, mat->lvec, bb, bb1)); 2200b1a666ecSBarry Smith 2201b1a666ecSBarry Smith /* local sweep */ 22029566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, SOR_SYMMETRIC_SWEEP, fshift, lits, 1, xx)); 2203b1a666ecSBarry Smith } 2204b1a666ecSBarry Smith } else if (flag & SOR_LOCAL_FORWARD_SWEEP) { 2205b1a666ecSBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 22069566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx)); 2207b1a666ecSBarry Smith its--; 2208b1a666ecSBarry Smith } 2209b1a666ecSBarry Smith while (its--) { 22109566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 22119566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 2212b1a666ecSBarry Smith 2213b1a666ecSBarry Smith /* update rhs: bb1 = bb - B*x */ 22149566063dSJacob Faibussowitsch PetscCall(VecScale(mat->lvec, -1.0)); 22159566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->multadd)(mat->B, mat->lvec, bb, bb1)); 2216b1a666ecSBarry Smith 2217b1a666ecSBarry Smith /* local sweep */ 22189566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, SOR_FORWARD_SWEEP, fshift, lits, 1, xx)); 2219b1a666ecSBarry Smith } 2220b1a666ecSBarry Smith } else if (flag & SOR_LOCAL_BACKWARD_SWEEP) { 2221b1a666ecSBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 22229566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx)); 2223b1a666ecSBarry Smith its--; 2224b1a666ecSBarry Smith } 2225b1a666ecSBarry Smith while (its--) { 22269566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 22279566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 2228b1a666ecSBarry Smith 2229b1a666ecSBarry Smith /* update rhs: bb1 = bb - B*x */ 22309566063dSJacob Faibussowitsch PetscCall(VecScale(mat->lvec, -1.0)); 22319566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->multadd)(mat->B, mat->lvec, bb, bb1)); 2232b1a666ecSBarry Smith 2233b1a666ecSBarry Smith /* local sweep */ 22349566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, SOR_BACKWARD_SWEEP, fshift, lits, 1, xx)); 2235b1a666ecSBarry Smith } 2236ce94432eSBarry Smith } else SETERRQ(PetscObjectComm((PetscObject)matin), PETSC_ERR_SUP, "Parallel version of SOR requested not supported"); 2237b1a666ecSBarry Smith 22389566063dSJacob Faibussowitsch PetscCall(VecDestroy(&bb1)); 22393ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2240b1a666ecSBarry Smith } 2241b1a666ecSBarry Smith 224266976f2fSJacob Faibussowitsch static PetscErrorCode MatGetColumnReductions_MPIBAIJ(Mat A, PetscInt type, PetscReal *reductions) 2243d71ae5a4SJacob Faibussowitsch { 224447f7623dSRémi Lacroix Mat_MPIBAIJ *aij = (Mat_MPIBAIJ *)A->data; 2245a873a8cdSSam Reynolds PetscInt m, N, i, *garray = aij->garray; 224647f7623dSRémi Lacroix PetscInt ib, jb, bs = A->rmap->bs; 224747f7623dSRémi Lacroix Mat_SeqBAIJ *a_aij = (Mat_SeqBAIJ *)aij->A->data; 224847f7623dSRémi Lacroix MatScalar *a_val = a_aij->a; 224947f7623dSRémi Lacroix Mat_SeqBAIJ *b_aij = (Mat_SeqBAIJ *)aij->B->data; 225047f7623dSRémi Lacroix MatScalar *b_val = b_aij->a; 225147f7623dSRémi Lacroix PetscReal *work; 225247f7623dSRémi Lacroix 225347f7623dSRémi Lacroix PetscFunctionBegin; 22549566063dSJacob Faibussowitsch PetscCall(MatGetSize(A, &m, &N)); 22559566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(N, &work)); 2256857cbf51SRichard Tran Mills if (type == NORM_2) { 225747f7623dSRémi Lacroix for (i = a_aij->i[0]; i < a_aij->i[aij->A->rmap->n / bs]; i++) { 225847f7623dSRémi Lacroix for (jb = 0; jb < bs; jb++) { 225947f7623dSRémi Lacroix for (ib = 0; ib < bs; ib++) { 226047f7623dSRémi Lacroix work[A->cmap->rstart + a_aij->j[i] * bs + jb] += PetscAbsScalar(*a_val * *a_val); 226147f7623dSRémi Lacroix a_val++; 226247f7623dSRémi Lacroix } 226347f7623dSRémi Lacroix } 226447f7623dSRémi Lacroix } 226547f7623dSRémi Lacroix for (i = b_aij->i[0]; i < b_aij->i[aij->B->rmap->n / bs]; i++) { 226647f7623dSRémi Lacroix for (jb = 0; jb < bs; jb++) { 226747f7623dSRémi Lacroix for (ib = 0; ib < bs; ib++) { 226847f7623dSRémi Lacroix work[garray[b_aij->j[i]] * bs + jb] += PetscAbsScalar(*b_val * *b_val); 226947f7623dSRémi Lacroix b_val++; 227047f7623dSRémi Lacroix } 227147f7623dSRémi Lacroix } 227247f7623dSRémi Lacroix } 2273857cbf51SRichard Tran Mills } else if (type == NORM_1) { 227447f7623dSRémi Lacroix for (i = a_aij->i[0]; i < a_aij->i[aij->A->rmap->n / bs]; i++) { 227547f7623dSRémi Lacroix for (jb = 0; jb < bs; jb++) { 227647f7623dSRémi Lacroix for (ib = 0; ib < bs; ib++) { 227747f7623dSRémi Lacroix work[A->cmap->rstart + a_aij->j[i] * bs + jb] += PetscAbsScalar(*a_val); 227847f7623dSRémi Lacroix a_val++; 227947f7623dSRémi Lacroix } 228047f7623dSRémi Lacroix } 228147f7623dSRémi Lacroix } 228247f7623dSRémi Lacroix for (i = b_aij->i[0]; i < b_aij->i[aij->B->rmap->n / bs]; i++) { 228347f7623dSRémi Lacroix for (jb = 0; jb < bs; jb++) { 228447f7623dSRémi Lacroix for (ib = 0; ib < bs; ib++) { 228547f7623dSRémi Lacroix work[garray[b_aij->j[i]] * bs + jb] += PetscAbsScalar(*b_val); 228647f7623dSRémi Lacroix b_val++; 228747f7623dSRémi Lacroix } 228847f7623dSRémi Lacroix } 228947f7623dSRémi Lacroix } 2290857cbf51SRichard Tran Mills } else if (type == NORM_INFINITY) { 229147f7623dSRémi Lacroix for (i = a_aij->i[0]; i < a_aij->i[aij->A->rmap->n / bs]; i++) { 229247f7623dSRémi Lacroix for (jb = 0; jb < bs; jb++) { 229347f7623dSRémi Lacroix for (ib = 0; ib < bs; ib++) { 22946497c311SBarry Smith PetscInt col = A->cmap->rstart + a_aij->j[i] * bs + jb; 229547f7623dSRémi Lacroix work[col] = PetscMax(PetscAbsScalar(*a_val), work[col]); 229647f7623dSRémi Lacroix a_val++; 229747f7623dSRémi Lacroix } 229847f7623dSRémi Lacroix } 229947f7623dSRémi Lacroix } 230047f7623dSRémi Lacroix for (i = b_aij->i[0]; i < b_aij->i[aij->B->rmap->n / bs]; i++) { 230147f7623dSRémi Lacroix for (jb = 0; jb < bs; jb++) { 230247f7623dSRémi Lacroix for (ib = 0; ib < bs; ib++) { 23036497c311SBarry Smith PetscInt col = garray[b_aij->j[i]] * bs + jb; 230447f7623dSRémi Lacroix work[col] = PetscMax(PetscAbsScalar(*b_val), work[col]); 230547f7623dSRémi Lacroix b_val++; 230647f7623dSRémi Lacroix } 230747f7623dSRémi Lacroix } 230847f7623dSRémi Lacroix } 2309857cbf51SRichard Tran Mills } else if (type == REDUCTION_SUM_REALPART || type == REDUCTION_MEAN_REALPART) { 2310a873a8cdSSam Reynolds for (i = a_aij->i[0]; i < a_aij->i[aij->A->rmap->n / bs]; i++) { 2311a873a8cdSSam Reynolds for (jb = 0; jb < bs; jb++) { 2312a873a8cdSSam Reynolds for (ib = 0; ib < bs; ib++) { 2313857cbf51SRichard Tran Mills work[A->cmap->rstart + a_aij->j[i] * bs + jb] += PetscRealPart(*a_val); 2314a873a8cdSSam Reynolds a_val++; 2315a873a8cdSSam Reynolds } 2316a873a8cdSSam Reynolds } 2317a873a8cdSSam Reynolds } 2318a873a8cdSSam Reynolds for (i = b_aij->i[0]; i < b_aij->i[aij->B->rmap->n / bs]; i++) { 2319a873a8cdSSam Reynolds for (jb = 0; jb < bs; jb++) { 2320a873a8cdSSam Reynolds for (ib = 0; ib < bs; ib++) { 2321857cbf51SRichard Tran Mills work[garray[b_aij->j[i]] * bs + jb] += PetscRealPart(*b_val); 2322a873a8cdSSam Reynolds b_val++; 2323a873a8cdSSam Reynolds } 2324a873a8cdSSam Reynolds } 2325a873a8cdSSam Reynolds } 2326857cbf51SRichard Tran Mills } else if (type == REDUCTION_SUM_IMAGINARYPART || type == REDUCTION_MEAN_IMAGINARYPART) { 2327857cbf51SRichard Tran Mills for (i = a_aij->i[0]; i < a_aij->i[aij->A->rmap->n / bs]; i++) { 2328857cbf51SRichard Tran Mills for (jb = 0; jb < bs; jb++) { 2329857cbf51SRichard Tran Mills for (ib = 0; ib < bs; ib++) { 2330857cbf51SRichard Tran Mills work[A->cmap->rstart + a_aij->j[i] * bs + jb] += PetscImaginaryPart(*a_val); 2331857cbf51SRichard Tran Mills a_val++; 2332857cbf51SRichard Tran Mills } 2333857cbf51SRichard Tran Mills } 2334857cbf51SRichard Tran Mills } 2335857cbf51SRichard Tran Mills for (i = b_aij->i[0]; i < b_aij->i[aij->B->rmap->n / bs]; i++) { 2336857cbf51SRichard Tran Mills for (jb = 0; jb < bs; jb++) { 2337857cbf51SRichard Tran Mills for (ib = 0; ib < bs; ib++) { 2338857cbf51SRichard Tran Mills work[garray[b_aij->j[i]] * bs + jb] += PetscImaginaryPart(*b_val); 2339857cbf51SRichard Tran Mills b_val++; 2340857cbf51SRichard Tran Mills } 2341857cbf51SRichard Tran Mills } 2342857cbf51SRichard Tran Mills } 2343857cbf51SRichard Tran Mills } else SETERRQ(PetscObjectComm((PetscObject)A), PETSC_ERR_ARG_WRONG, "Unknown reduction type"); 2344857cbf51SRichard Tran Mills if (type == NORM_INFINITY) { 2345e91c04dfSPierre Jolivet PetscCallMPI(MPIU_Allreduce(work, reductions, N, MPIU_REAL, MPIU_MAX, PetscObjectComm((PetscObject)A))); 234647f7623dSRémi Lacroix } else { 2347e91c04dfSPierre Jolivet PetscCallMPI(MPIU_Allreduce(work, reductions, N, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)A))); 234847f7623dSRémi Lacroix } 23499566063dSJacob Faibussowitsch PetscCall(PetscFree(work)); 2350857cbf51SRichard Tran Mills if (type == NORM_2) { 2351a873a8cdSSam Reynolds for (i = 0; i < N; i++) reductions[i] = PetscSqrtReal(reductions[i]); 2352857cbf51SRichard Tran Mills } else if (type == REDUCTION_MEAN_REALPART || type == REDUCTION_MEAN_IMAGINARYPART) { 2353a873a8cdSSam Reynolds for (i = 0; i < N; i++) reductions[i] /= m; 235447f7623dSRémi Lacroix } 23553ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 235647f7623dSRémi Lacroix } 235747f7623dSRémi Lacroix 235866976f2fSJacob Faibussowitsch static PetscErrorCode MatInvertBlockDiagonal_MPIBAIJ(Mat A, const PetscScalar **values) 2359d71ae5a4SJacob Faibussowitsch { 2360bbead8a2SBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 2361bbead8a2SBarry Smith 2362bbead8a2SBarry Smith PetscFunctionBegin; 23639566063dSJacob Faibussowitsch PetscCall(MatInvertBlockDiagonal(a->A, values)); 23647b6c816cSBarry Smith A->factorerrortype = a->A->factorerrortype; 23657b6c816cSBarry Smith A->factorerror_zeropivot_value = a->A->factorerror_zeropivot_value; 23667b6c816cSBarry Smith A->factorerror_zeropivot_row = a->A->factorerror_zeropivot_row; 23673ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2368bbead8a2SBarry Smith } 2369bbead8a2SBarry Smith 237066976f2fSJacob Faibussowitsch static PetscErrorCode MatShift_MPIBAIJ(Mat Y, PetscScalar a) 2371d71ae5a4SJacob Faibussowitsch { 23727d68702bSBarry Smith Mat_MPIBAIJ *maij = (Mat_MPIBAIJ *)Y->data; 23736f33a894SBarry Smith Mat_SeqBAIJ *aij = (Mat_SeqBAIJ *)maij->A->data; 23747d68702bSBarry Smith 23757d68702bSBarry Smith PetscFunctionBegin; 23766f33a894SBarry Smith if (!Y->preallocated) { 23779566063dSJacob Faibussowitsch PetscCall(MatMPIBAIJSetPreallocation(Y, Y->rmap->bs, 1, NULL, 0, NULL)); 23786f33a894SBarry Smith } else if (!aij->nz) { 2379b83222d8SBarry Smith PetscInt nonew = aij->nonew; 23809566063dSJacob Faibussowitsch PetscCall(MatSeqBAIJSetPreallocation(maij->A, Y->rmap->bs, 1, NULL)); 2381b83222d8SBarry Smith aij->nonew = nonew; 23827d68702bSBarry Smith } 23839566063dSJacob Faibussowitsch PetscCall(MatShift_Basic(Y, a)); 23843ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 23857d68702bSBarry Smith } 23868c7482ecSBarry Smith 238766976f2fSJacob Faibussowitsch static PetscErrorCode MatGetDiagonalBlock_MPIBAIJ(Mat A, Mat *a) 2388d71ae5a4SJacob Faibussowitsch { 2389a5b7ff6bSBarry Smith PetscFunctionBegin; 2390a5b7ff6bSBarry Smith *a = ((Mat_MPIBAIJ *)A->data)->A; 23913ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2392a5b7ff6bSBarry Smith } 2393a5b7ff6bSBarry Smith 239417ea310bSPierre Jolivet static PetscErrorCode MatEliminateZeros_MPIBAIJ(Mat A, PetscBool keep) 239517ea310bSPierre Jolivet { 239617ea310bSPierre Jolivet Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 239717ea310bSPierre Jolivet 239817ea310bSPierre Jolivet PetscFunctionBegin; 239917ea310bSPierre Jolivet PetscCall(MatEliminateZeros_SeqBAIJ(a->A, keep)); // possibly keep zero diagonal coefficients 240017ea310bSPierre Jolivet PetscCall(MatEliminateZeros_SeqBAIJ(a->B, PETSC_FALSE)); // never keep zero diagonal coefficients 240117ea310bSPierre Jolivet PetscFunctionReturn(PETSC_SUCCESS); 240217ea310bSPierre Jolivet } 240317ea310bSPierre Jolivet 24043964eb88SJed Brown static struct _MatOps MatOps_Values = {MatSetValues_MPIBAIJ, 2405cc2dc46cSBarry Smith MatGetRow_MPIBAIJ, 2406cc2dc46cSBarry Smith MatRestoreRow_MPIBAIJ, 2407cc2dc46cSBarry Smith MatMult_MPIBAIJ, 240897304618SKris Buschelman /* 4*/ MatMultAdd_MPIBAIJ, 24097c922b88SBarry Smith MatMultTranspose_MPIBAIJ, 24107c922b88SBarry Smith MatMultTransposeAdd_MPIBAIJ, 2411f4259b30SLisandro Dalcin NULL, 2412f4259b30SLisandro Dalcin NULL, 2413f4259b30SLisandro Dalcin NULL, 2414f4259b30SLisandro Dalcin /*10*/ NULL, 2415f4259b30SLisandro Dalcin NULL, 2416f4259b30SLisandro Dalcin NULL, 2417b1a666ecSBarry Smith MatSOR_MPIBAIJ, 2418cc2dc46cSBarry Smith MatTranspose_MPIBAIJ, 241997304618SKris Buschelman /*15*/ MatGetInfo_MPIBAIJ, 24207fc3c18eSBarry Smith MatEqual_MPIBAIJ, 2421cc2dc46cSBarry Smith MatGetDiagonal_MPIBAIJ, 2422cc2dc46cSBarry Smith MatDiagonalScale_MPIBAIJ, 2423cc2dc46cSBarry Smith MatNorm_MPIBAIJ, 242497304618SKris Buschelman /*20*/ MatAssemblyBegin_MPIBAIJ, 2425cc2dc46cSBarry Smith MatAssemblyEnd_MPIBAIJ, 2426cc2dc46cSBarry Smith MatSetOption_MPIBAIJ, 2427cc2dc46cSBarry Smith MatZeroEntries_MPIBAIJ, 2428d519adbfSMatthew Knepley /*24*/ MatZeroRows_MPIBAIJ, 2429f4259b30SLisandro Dalcin NULL, 2430f4259b30SLisandro Dalcin NULL, 2431f4259b30SLisandro Dalcin NULL, 2432f4259b30SLisandro Dalcin NULL, 243326cec326SBarry Smith /*29*/ MatSetUp_MPI_Hash, 2434f4259b30SLisandro Dalcin NULL, 2435f4259b30SLisandro Dalcin NULL, 2436a5b7ff6bSBarry Smith MatGetDiagonalBlock_MPIBAIJ, 2437f4259b30SLisandro Dalcin NULL, 2438d519adbfSMatthew Knepley /*34*/ MatDuplicate_MPIBAIJ, 2439f4259b30SLisandro Dalcin NULL, 2440f4259b30SLisandro Dalcin NULL, 2441f4259b30SLisandro Dalcin NULL, 2442f4259b30SLisandro Dalcin NULL, 2443d519adbfSMatthew Knepley /*39*/ MatAXPY_MPIBAIJ, 24447dae84e0SHong Zhang MatCreateSubMatrices_MPIBAIJ, 2445cc2dc46cSBarry Smith MatIncreaseOverlap_MPIBAIJ, 2446cc2dc46cSBarry Smith MatGetValues_MPIBAIJ, 24473c896bc6SHong Zhang MatCopy_MPIBAIJ, 2448f4259b30SLisandro Dalcin /*44*/ NULL, 2449cc2dc46cSBarry Smith MatScale_MPIBAIJ, 24507d68702bSBarry Smith MatShift_MPIBAIJ, 2451f4259b30SLisandro Dalcin NULL, 24526f0a72daSMatthew G. Knepley MatZeroRowsColumns_MPIBAIJ, 2453f4259b30SLisandro Dalcin /*49*/ NULL, 2454f4259b30SLisandro Dalcin NULL, 2455f4259b30SLisandro Dalcin NULL, 2456f4259b30SLisandro Dalcin NULL, 2457f4259b30SLisandro Dalcin NULL, 245893dfae19SHong Zhang /*54*/ MatFDColoringCreate_MPIXAIJ, 2459f4259b30SLisandro Dalcin NULL, 2460cc2dc46cSBarry Smith MatSetUnfactored_MPIBAIJ, 246182094794SBarry Smith MatPermute_MPIBAIJ, 2462cc2dc46cSBarry Smith MatSetValuesBlocked_MPIBAIJ, 24637dae84e0SHong Zhang /*59*/ MatCreateSubMatrix_MPIBAIJ, 2464f14a1c24SBarry Smith MatDestroy_MPIBAIJ, 2465f14a1c24SBarry Smith MatView_MPIBAIJ, 2466f4259b30SLisandro Dalcin NULL, 2467f4259b30SLisandro Dalcin NULL, 2468f4259b30SLisandro Dalcin /*64*/ NULL, 2469f4259b30SLisandro Dalcin NULL, 2470f4259b30SLisandro Dalcin NULL, 2471f4259b30SLisandro Dalcin NULL, 24728bb0f5c6SPierre Jolivet MatGetRowMaxAbs_MPIBAIJ, 24738bb0f5c6SPierre Jolivet /*69*/ NULL, 2474f4259b30SLisandro Dalcin NULL, 2475f4259b30SLisandro Dalcin NULL, 2476f6d58c54SBarry Smith MatFDColoringApply_BAIJ, 2477f4259b30SLisandro Dalcin NULL, 24788bb0f5c6SPierre Jolivet /*74*/ NULL, 2479f4259b30SLisandro Dalcin NULL, 2480f4259b30SLisandro Dalcin NULL, 2481f4259b30SLisandro Dalcin NULL, 24825bba2384SShri Abhyankar MatLoad_MPIBAIJ, 24838bb0f5c6SPierre Jolivet /*79*/ NULL, 24848bb0f5c6SPierre Jolivet NULL, 24858bb0f5c6SPierre Jolivet NULL, 24868bb0f5c6SPierre Jolivet NULL, 24878bb0f5c6SPierre Jolivet NULL, 2488f4259b30SLisandro Dalcin /*84*/ NULL, 2489f4259b30SLisandro Dalcin NULL, 2490f4259b30SLisandro Dalcin NULL, 2491f4259b30SLisandro Dalcin NULL, 2492f4259b30SLisandro Dalcin NULL, 2493f4259b30SLisandro Dalcin /*89*/ NULL, 2494f4259b30SLisandro Dalcin NULL, 2495f4259b30SLisandro Dalcin NULL, 2496f4259b30SLisandro Dalcin NULL, 24978bb0f5c6SPierre Jolivet MatConjugate_MPIBAIJ, 2498f4259b30SLisandro Dalcin /*94*/ NULL, 2499f4259b30SLisandro Dalcin NULL, 25008bb0f5c6SPierre Jolivet MatRealPart_MPIBAIJ, 25018bb0f5c6SPierre Jolivet MatImaginaryPart_MPIBAIJ, 2502f4259b30SLisandro Dalcin NULL, 2503f4259b30SLisandro Dalcin /*99*/ NULL, 2504f4259b30SLisandro Dalcin NULL, 2505f4259b30SLisandro Dalcin NULL, 2506f4259b30SLisandro Dalcin NULL, 2507f4259b30SLisandro Dalcin NULL, 2508421480d9SBarry Smith /*104*/ MatGetSeqNonzeroStructure_MPIBAIJ, 25098bb0f5c6SPierre Jolivet NULL, 25108bb0f5c6SPierre Jolivet MatGetGhosts_MPIBAIJ, 2511f4259b30SLisandro Dalcin NULL, 2512421480d9SBarry Smith NULL, 2513f4259b30SLisandro Dalcin /*109*/ NULL, 2514f4259b30SLisandro Dalcin NULL, 2515f4259b30SLisandro Dalcin NULL, 2516f4259b30SLisandro Dalcin NULL, 2517421480d9SBarry Smith MatGetMultiProcBlock_MPIBAIJ, 2518421480d9SBarry Smith /*114*/ NULL, 25198bb0f5c6SPierre Jolivet MatGetColumnReductions_MPIBAIJ, 25208bb0f5c6SPierre Jolivet MatInvertBlockDiagonal_MPIBAIJ, 2521f4259b30SLisandro Dalcin NULL, 2522421480d9SBarry Smith NULL, 2523f4259b30SLisandro Dalcin /*119*/ NULL, 2524f4259b30SLisandro Dalcin NULL, 2525f4259b30SLisandro Dalcin NULL, 2526f4259b30SLisandro Dalcin NULL, 25278bb0f5c6SPierre Jolivet NULL, 2528f4259b30SLisandro Dalcin /*124*/ NULL, 2529f4259b30SLisandro Dalcin NULL, 25308bb0f5c6SPierre Jolivet MatSetBlockSizes_Default, 2531f4259b30SLisandro Dalcin NULL, 2532421480d9SBarry Smith MatFDColoringSetUp_MPIXAIJ, 2533421480d9SBarry Smith /*129*/ NULL, 25348bb0f5c6SPierre Jolivet MatCreateMPIMatConcatenateSeqMat_MPIBAIJ, 2535f4259b30SLisandro Dalcin NULL, 2536f4259b30SLisandro Dalcin NULL, 2537421480d9SBarry Smith NULL, 2538f4259b30SLisandro Dalcin /*134*/ NULL, 2539f4259b30SLisandro Dalcin NULL, 2540eede4a3fSMark Adams MatEliminateZeros_MPIBAIJ, 25414cc2b5b5SPierre Jolivet MatGetRowSumAbs_MPIBAIJ, 254242ce410bSJunchao Zhang NULL, 2543421480d9SBarry Smith /*139*/ NULL, 254442ce410bSJunchao Zhang NULL, 254503db1824SAlex Lindsay MatCopyHashToXAIJ_MPI_Hash, 2546c2be7ffeSStefano Zampini NULL, 254703db1824SAlex Lindsay NULL}; 254879bdfe76SSatish Balay 2549cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIBAIJ_MPISBAIJ(Mat, MatType, MatReuse, Mat *); 2550c9225affSStefano Zampini PETSC_INTERN PetscErrorCode MatConvert_XAIJ_IS(Mat, MatType, MatReuse, Mat *); 2551d94109b8SHong Zhang 255266976f2fSJacob Faibussowitsch static PetscErrorCode MatMPIBAIJSetPreallocationCSR_MPIBAIJ(Mat B, PetscInt bs, const PetscInt ii[], const PetscInt jj[], const PetscScalar V[]) 2553d71ae5a4SJacob Faibussowitsch { 2554b8d659d7SLisandro Dalcin PetscInt m, rstart, cstart, cend; 2555f4259b30SLisandro Dalcin PetscInt i, j, dlen, olen, nz, nz_max = 0, *d_nnz = NULL, *o_nnz = NULL; 2556f4259b30SLisandro Dalcin const PetscInt *JJ = NULL; 2557f4259b30SLisandro Dalcin PetscScalar *values = NULL; 2558d47bf9aaSJed Brown PetscBool roworiented = ((Mat_MPIBAIJ *)B->data)->roworiented; 25593bd0feecSPierre Jolivet PetscBool nooffprocentries; 2560aac34f13SBarry Smith 2561aac34f13SBarry Smith PetscFunctionBegin; 25629566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetBlockSize(B->rmap, bs)); 25639566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetBlockSize(B->cmap, bs)); 25649566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->rmap)); 25659566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->cmap)); 25669566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetBlockSize(B->rmap, &bs)); 2567d0f46423SBarry Smith m = B->rmap->n / bs; 2568d0f46423SBarry Smith rstart = B->rmap->rstart / bs; 2569d0f46423SBarry Smith cstart = B->cmap->rstart / bs; 2570d0f46423SBarry Smith cend = B->cmap->rend / bs; 2571b8d659d7SLisandro Dalcin 25725f80ce2aSJacob Faibussowitsch PetscCheck(!ii[0], PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "ii[0] must be 0 but it is %" PetscInt_FMT, ii[0]); 25739566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(m, &d_nnz, m, &o_nnz)); 2574aac34f13SBarry Smith for (i = 0; i < m; i++) { 2575cf12db73SBarry Smith nz = ii[i + 1] - ii[i]; 25765f80ce2aSJacob Faibussowitsch PetscCheck(nz >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Local row %" PetscInt_FMT " has a negative number of columns %" PetscInt_FMT, i, nz); 2577b8d659d7SLisandro Dalcin nz_max = PetscMax(nz_max, nz); 257837cd3c0dSBarry Smith dlen = 0; 257937cd3c0dSBarry Smith olen = 0; 2580cf12db73SBarry Smith JJ = jj + ii[i]; 2581b8d659d7SLisandro Dalcin for (j = 0; j < nz; j++) { 258237cd3c0dSBarry Smith if (*JJ < cstart || *JJ >= cend) olen++; 258337cd3c0dSBarry Smith else dlen++; 2584aac34f13SBarry Smith JJ++; 2585aac34f13SBarry Smith } 258637cd3c0dSBarry Smith d_nnz[i] = dlen; 258737cd3c0dSBarry Smith o_nnz[i] = olen; 2588aac34f13SBarry Smith } 25899566063dSJacob Faibussowitsch PetscCall(MatMPIBAIJSetPreallocation(B, bs, 0, d_nnz, 0, o_nnz)); 25909566063dSJacob Faibussowitsch PetscCall(PetscFree2(d_nnz, o_nnz)); 2591aac34f13SBarry Smith 2592b8d659d7SLisandro Dalcin values = (PetscScalar *)V; 259348a46eb9SPierre Jolivet if (!values) PetscCall(PetscCalloc1(bs * bs * nz_max, &values)); 2594b8d659d7SLisandro Dalcin for (i = 0; i < m; i++) { 2595b8d659d7SLisandro Dalcin PetscInt row = i + rstart; 2596cf12db73SBarry Smith PetscInt ncols = ii[i + 1] - ii[i]; 2597cf12db73SBarry Smith const PetscInt *icols = jj + ii[i]; 2598bb80cfbbSStefano Zampini if (bs == 1 || !roworiented) { /* block ordering matches the non-nested layout of MatSetValues so we can insert entire rows */ 2599cf12db73SBarry Smith const PetscScalar *svals = values + (V ? (bs * bs * ii[i]) : 0); 26009566063dSJacob Faibussowitsch PetscCall(MatSetValuesBlocked_MPIBAIJ(B, 1, &row, ncols, icols, svals, INSERT_VALUES)); 26013adadaf3SJed Brown } else { /* block ordering does not match so we can only insert one block at a time. */ 26023adadaf3SJed Brown PetscInt j; 26033adadaf3SJed Brown for (j = 0; j < ncols; j++) { 26043adadaf3SJed Brown const PetscScalar *svals = values + (V ? (bs * bs * (ii[i] + j)) : 0); 26059566063dSJacob Faibussowitsch PetscCall(MatSetValuesBlocked_MPIBAIJ(B, 1, &row, 1, &icols[j], svals, INSERT_VALUES)); 26063adadaf3SJed Brown } 26073adadaf3SJed Brown } 2608aac34f13SBarry Smith } 2609aac34f13SBarry Smith 26109566063dSJacob Faibussowitsch if (!V) PetscCall(PetscFree(values)); 26113bd0feecSPierre Jolivet nooffprocentries = B->nooffprocentries; 26123bd0feecSPierre Jolivet B->nooffprocentries = PETSC_TRUE; 26139566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY)); 26149566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY)); 26153bd0feecSPierre Jolivet B->nooffprocentries = nooffprocentries; 26163bd0feecSPierre Jolivet 26179566063dSJacob Faibussowitsch PetscCall(MatSetOption(B, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE)); 26183ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2619aac34f13SBarry Smith } 2620aac34f13SBarry Smith 2621aac34f13SBarry Smith /*@C 262211a5261eSBarry Smith MatMPIBAIJSetPreallocationCSR - Creates a sparse parallel matrix in `MATBAIJ` format using the given nonzero structure and (optional) numerical values 2623aac34f13SBarry Smith 2624d083f849SBarry Smith Collective 2625aac34f13SBarry Smith 2626aac34f13SBarry Smith Input Parameters: 26271c4f3114SJed Brown + B - the matrix 2628dfb205c3SBarry Smith . bs - the block size 262920f4b53cSBarry Smith . i - the indices into `j` for the start of each local row (starts with zero) 2630aac34f13SBarry Smith . j - the column indices for each local row (starts with zero) these must be sorted for each row 2631d8a51d2aSBarry Smith - v - optional values in the matrix, use `NULL` if not provided 2632aac34f13SBarry Smith 2633664954b6SBarry Smith Level: advanced 2634aac34f13SBarry Smith 263595452b02SPatrick Sanan Notes: 2636d8a51d2aSBarry Smith The `i`, `j`, and `v` arrays ARE copied by this routine into the internal format used by PETSc; 2637d8a51d2aSBarry Smith thus you CANNOT change the matrix entries by changing the values of `v` after you have 2638d8a51d2aSBarry Smith called this routine. 2639d8a51d2aSBarry Smith 264011a5261eSBarry Smith The order of the entries in values is specified by the `MatOption` `MAT_ROW_ORIENTED`. For example, C programs 264111a5261eSBarry Smith may want to use the default `MAT_ROW_ORIENTED` with value `PETSC_TRUE` and use an array v[nnz][bs][bs] where the second index is 26423adadaf3SJed Brown over rows within a block and the last index is over columns within a block row. Fortran programs will likely set 264311a5261eSBarry Smith `MAT_ROW_ORIENTED` with value `PETSC_FALSE` and use a Fortran array v(bs,bs,nnz) in which the first index is over rows within a 26443adadaf3SJed Brown block column and the second index is over columns within a block. 26453adadaf3SJed Brown 2646664954b6SBarry Smith Though this routine has Preallocation() in the name it also sets the exact nonzero locations of the matrix entries and usually the numerical values as well 2647664954b6SBarry Smith 26487d2c085eSPierre Jolivet .seealso: `Mat`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIBAIJSetPreallocation()`, `MatCreateAIJ()`, `MATMPIAIJ`, `MatCreateMPIBAIJWithArrays()`, `MATMPIBAIJ` 2649aac34f13SBarry Smith @*/ 2650d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIBAIJSetPreallocationCSR(Mat B, PetscInt bs, const PetscInt i[], const PetscInt j[], const PetscScalar v[]) 2651d71ae5a4SJacob Faibussowitsch { 2652aac34f13SBarry Smith PetscFunctionBegin; 26536ba663aaSJed Brown PetscValidHeaderSpecific(B, MAT_CLASSID, 1); 26546ba663aaSJed Brown PetscValidType(B, 1); 26556ba663aaSJed Brown PetscValidLogicalCollectiveInt(B, bs, 2); 2656cac4c232SBarry Smith PetscTryMethod(B, "MatMPIBAIJSetPreallocationCSR_C", (Mat, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[]), (B, bs, i, j, v)); 26573ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2658aac34f13SBarry Smith } 2659aac34f13SBarry Smith 2660d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIBAIJSetPreallocation_MPIBAIJ(Mat B, PetscInt bs, PetscInt d_nz, const PetscInt *d_nnz, PetscInt o_nz, const PetscInt *o_nnz) 2661d71ae5a4SJacob Faibussowitsch { 2662ad79cf63SBarry Smith Mat_MPIBAIJ *b = (Mat_MPIBAIJ *)B->data; 2663535b19f3SBarry Smith PetscInt i; 26645d2a9ed1SStefano Zampini PetscMPIInt size; 2665a23d5eceSKris Buschelman 2666a23d5eceSKris Buschelman PetscFunctionBegin; 2667ad79cf63SBarry Smith if (B->hash_active) { 2668aea10558SJacob Faibussowitsch B->ops[0] = b->cops; 2669ad79cf63SBarry Smith B->hash_active = PETSC_FALSE; 2670ad79cf63SBarry Smith } 2671ad79cf63SBarry Smith if (!B->preallocated) PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)B), bs, &B->bstash)); 267258b7e2c1SStefano Zampini PetscCall(MatSetBlockSize(B, bs)); 26739566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->rmap)); 26749566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->cmap)); 26759566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetBlockSize(B->rmap, &bs)); 2676899cda47SBarry Smith 2677a23d5eceSKris Buschelman if (d_nnz) { 2678ad540459SPierre Jolivet for (i = 0; i < B->rmap->n / bs; i++) PetscCheck(d_nnz[i] >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "d_nnz cannot be less than -1: local row %" PetscInt_FMT " value %" PetscInt_FMT, i, d_nnz[i]); 2679a23d5eceSKris Buschelman } 2680a23d5eceSKris Buschelman if (o_nnz) { 2681ad540459SPierre Jolivet for (i = 0; i < B->rmap->n / bs; i++) PetscCheck(o_nnz[i] >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "o_nnz cannot be less than -1: local row %" PetscInt_FMT " value %" PetscInt_FMT, i, o_nnz[i]); 2682a23d5eceSKris Buschelman } 2683a23d5eceSKris Buschelman 2684a23d5eceSKris Buschelman b->bs2 = bs * bs; 2685d0f46423SBarry Smith b->mbs = B->rmap->n / bs; 2686d0f46423SBarry Smith b->nbs = B->cmap->n / bs; 2687d0f46423SBarry Smith b->Mbs = B->rmap->N / bs; 2688d0f46423SBarry Smith b->Nbs = B->cmap->N / bs; 2689a23d5eceSKris Buschelman 2690ad540459SPierre Jolivet for (i = 0; i <= b->size; i++) b->rangebs[i] = B->rmap->range[i] / bs; 2691d0f46423SBarry Smith b->rstartbs = B->rmap->rstart / bs; 2692d0f46423SBarry Smith b->rendbs = B->rmap->rend / bs; 2693d0f46423SBarry Smith b->cstartbs = B->cmap->rstart / bs; 2694d0f46423SBarry Smith b->cendbs = B->cmap->rend / bs; 2695a23d5eceSKris Buschelman 2696cb7b82ddSBarry Smith #if defined(PETSC_USE_CTABLE) 2697eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIDestroy(&b->colmap)); 2698cb7b82ddSBarry Smith #else 26999566063dSJacob Faibussowitsch PetscCall(PetscFree(b->colmap)); 2700cb7b82ddSBarry Smith #endif 27019566063dSJacob Faibussowitsch PetscCall(PetscFree(b->garray)); 27029566063dSJacob Faibussowitsch PetscCall(VecDestroy(&b->lvec)); 27039566063dSJacob Faibussowitsch PetscCall(VecScatterDestroy(&b->Mvctx)); 2704cb7b82ddSBarry Smith 27059566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)B), &size)); 2706c508b908SBarry Smith 2707c508b908SBarry Smith MatSeqXAIJGetOptions_Private(b->B); 27089566063dSJacob Faibussowitsch PetscCall(MatDestroy(&b->B)); 27099566063dSJacob Faibussowitsch PetscCall(MatCreate(PETSC_COMM_SELF, &b->B)); 27109566063dSJacob Faibussowitsch PetscCall(MatSetSizes(b->B, B->rmap->n, size > 1 ? B->cmap->N : 0, B->rmap->n, size > 1 ? B->cmap->N : 0)); 27119566063dSJacob Faibussowitsch PetscCall(MatSetType(b->B, MATSEQBAIJ)); 2712c508b908SBarry Smith MatSeqXAIJRestoreOptions_Private(b->B); 2713cb7b82ddSBarry Smith 2714c508b908SBarry Smith MatSeqXAIJGetOptions_Private(b->A); 2715ad79cf63SBarry Smith PetscCall(MatDestroy(&b->A)); 27169566063dSJacob Faibussowitsch PetscCall(MatCreate(PETSC_COMM_SELF, &b->A)); 27179566063dSJacob Faibussowitsch PetscCall(MatSetSizes(b->A, B->rmap->n, B->cmap->n, B->rmap->n, B->cmap->n)); 27189566063dSJacob Faibussowitsch PetscCall(MatSetType(b->A, MATSEQBAIJ)); 2719c508b908SBarry Smith MatSeqXAIJRestoreOptions_Private(b->A); 2720a23d5eceSKris Buschelman 27219566063dSJacob Faibussowitsch PetscCall(MatSeqBAIJSetPreallocation(b->A, bs, d_nz, d_nnz)); 27229566063dSJacob Faibussowitsch PetscCall(MatSeqBAIJSetPreallocation(b->B, bs, o_nz, o_nnz)); 2723526dfc15SBarry Smith B->preallocated = PETSC_TRUE; 2724cb7b82ddSBarry Smith B->was_assembled = PETSC_FALSE; 2725cb7b82ddSBarry Smith B->assembled = PETSC_FALSE; 27263ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2727a23d5eceSKris Buschelman } 2728a23d5eceSKris Buschelman 27297087cfbeSBarry Smith extern PetscErrorCode MatDiagonalScaleLocal_MPIBAIJ(Mat, Vec); 27307087cfbeSBarry Smith extern PetscErrorCode MatSetHashTableFactor_MPIBAIJ(Mat, PetscReal); 27315bf65638SKris Buschelman 2732d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode MatConvert_MPIBAIJ_MPIAdj(Mat B, MatType newtype, MatReuse reuse, Mat *adj) 2733d71ae5a4SJacob Faibussowitsch { 273482094794SBarry Smith Mat_MPIBAIJ *b = (Mat_MPIBAIJ *)B->data; 273582094794SBarry Smith Mat_SeqBAIJ *d = (Mat_SeqBAIJ *)b->A->data, *o = (Mat_SeqBAIJ *)b->B->data; 273682094794SBarry Smith PetscInt M = B->rmap->n / B->rmap->bs, i, *ii, *jj, cnt, j, k, rstart = B->rmap->rstart / B->rmap->bs; 273782094794SBarry Smith const PetscInt *id = d->i, *jd = d->j, *io = o->i, *jo = o->j, *garray = b->garray; 273882094794SBarry Smith 273982094794SBarry Smith PetscFunctionBegin; 27409566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(M + 1, &ii)); 274182094794SBarry Smith ii[0] = 0; 274282094794SBarry Smith for (i = 0; i < M; i++) { 274308401ef6SPierre Jolivet PetscCheck((id[i + 1] - id[i]) >= 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Indices wrong %" PetscInt_FMT " %" PetscInt_FMT " %" PetscInt_FMT, i, id[i], id[i + 1]); 274408401ef6SPierre Jolivet PetscCheck((io[i + 1] - io[i]) >= 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Indices wrong %" PetscInt_FMT " %" PetscInt_FMT " %" PetscInt_FMT, i, io[i], io[i + 1]); 274582094794SBarry Smith ii[i + 1] = ii[i] + id[i + 1] - id[i] + io[i + 1] - io[i]; 27465ee9ba1cSJed Brown /* remove one from count of matrix has diagonal */ 27475ee9ba1cSJed Brown for (j = id[i]; j < id[i + 1]; j++) { 27489371c9d4SSatish Balay if (jd[j] == i) { 27499371c9d4SSatish Balay ii[i + 1]--; 27509371c9d4SSatish Balay break; 27519371c9d4SSatish Balay } 27525ee9ba1cSJed Brown } 275382094794SBarry Smith } 27549566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(ii[M], &jj)); 275582094794SBarry Smith cnt = 0; 275682094794SBarry Smith for (i = 0; i < M; i++) { 275782094794SBarry Smith for (j = io[i]; j < io[i + 1]; j++) { 275882094794SBarry Smith if (garray[jo[j]] > rstart) break; 275982094794SBarry Smith jj[cnt++] = garray[jo[j]]; 276082094794SBarry Smith } 276182094794SBarry Smith for (k = id[i]; k < id[i + 1]; k++) { 2762ad540459SPierre Jolivet if (jd[k] != i) jj[cnt++] = rstart + jd[k]; 276382094794SBarry Smith } 2764ad540459SPierre Jolivet for (; j < io[i + 1]; j++) jj[cnt++] = garray[jo[j]]; 276582094794SBarry Smith } 27669566063dSJacob Faibussowitsch PetscCall(MatCreateMPIAdj(PetscObjectComm((PetscObject)B), M, B->cmap->N / B->rmap->bs, ii, jj, NULL, adj)); 27673ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 276882094794SBarry Smith } 276982094794SBarry Smith 2770c6db04a5SJed Brown #include <../src/mat/impls/aij/mpi/mpiaij.h> 277162471d69SBarry Smith 2772cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_SeqBAIJ_SeqAIJ(Mat, MatType, MatReuse, Mat *); 2773b2573a8aSBarry Smith 2774d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode MatConvert_MPIBAIJ_MPIAIJ(Mat A, MatType newtype, MatReuse reuse, Mat *newmat) 2775d71ae5a4SJacob Faibussowitsch { 277662471d69SBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 277785a69837SSatish Balay Mat_MPIAIJ *b; 27785f80ce2aSJacob Faibussowitsch Mat B; 277962471d69SBarry Smith 278062471d69SBarry Smith PetscFunctionBegin; 27815f80ce2aSJacob Faibussowitsch PetscCheck(A->assembled, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Matrix must be assembled"); 278262471d69SBarry Smith 27830f6d62edSLisandro Dalcin if (reuse == MAT_REUSE_MATRIX) { 27840f6d62edSLisandro Dalcin B = *newmat; 27850f6d62edSLisandro Dalcin } else { 27869566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)A), &B)); 27879566063dSJacob Faibussowitsch PetscCall(MatSetType(B, MATMPIAIJ)); 27889566063dSJacob Faibussowitsch PetscCall(MatSetSizes(B, A->rmap->n, A->cmap->n, A->rmap->N, A->cmap->N)); 27899566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizes(B, A->rmap->bs, A->cmap->bs)); 27909566063dSJacob Faibussowitsch PetscCall(MatSeqAIJSetPreallocation(B, 0, NULL)); 27919566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(B, 0, NULL, 0, NULL)); 27920f6d62edSLisandro Dalcin } 279362471d69SBarry Smith b = (Mat_MPIAIJ *)B->data; 279462471d69SBarry Smith 27950f6d62edSLisandro Dalcin if (reuse == MAT_REUSE_MATRIX) { 27969566063dSJacob Faibussowitsch PetscCall(MatConvert_SeqBAIJ_SeqAIJ(a->A, MATSEQAIJ, MAT_REUSE_MATRIX, &b->A)); 27979566063dSJacob Faibussowitsch PetscCall(MatConvert_SeqBAIJ_SeqAIJ(a->B, MATSEQAIJ, MAT_REUSE_MATRIX, &b->B)); 27980f6d62edSLisandro Dalcin } else { 27997c612885SStefano Zampini PetscInt *garray = a->garray; 28007c612885SStefano Zampini Mat_SeqAIJ *bB; 28017c612885SStefano Zampini PetscInt bs, nnz; 28029566063dSJacob Faibussowitsch PetscCall(MatDestroy(&b->A)); 28039566063dSJacob Faibussowitsch PetscCall(MatDestroy(&b->B)); 28047c612885SStefano Zampini /* just clear out the data structure */ 2805eb14dd14SAlex Lindsay PetscCall(MatDisAssemble_MPIAIJ(B, PETSC_FALSE)); 28069566063dSJacob Faibussowitsch PetscCall(MatConvert_SeqBAIJ_SeqAIJ(a->A, MATSEQAIJ, MAT_INITIAL_MATRIX, &b->A)); 28079566063dSJacob Faibussowitsch PetscCall(MatConvert_SeqBAIJ_SeqAIJ(a->B, MATSEQAIJ, MAT_INITIAL_MATRIX, &b->B)); 28087c612885SStefano Zampini 28097c612885SStefano Zampini /* Global numbering for b->B columns */ 28107c612885SStefano Zampini bB = (Mat_SeqAIJ *)b->B->data; 28117c612885SStefano Zampini bs = A->rmap->bs; 28127c612885SStefano Zampini nnz = bB->i[A->rmap->n]; 28137c612885SStefano Zampini for (PetscInt k = 0; k < nnz; k++) { 28147c612885SStefano Zampini PetscInt bj = bB->j[k] / bs; 28157c612885SStefano Zampini PetscInt br = bB->j[k] % bs; 28167c612885SStefano Zampini bB->j[k] = garray[bj] * bs + br; 28177c612885SStefano Zampini } 28180f6d62edSLisandro Dalcin } 28199566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY)); 28209566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY)); 28210f6d62edSLisandro Dalcin 2822511c6705SHong Zhang if (reuse == MAT_INPLACE_MATRIX) { 28239566063dSJacob Faibussowitsch PetscCall(MatHeaderReplace(A, &B)); 282462471d69SBarry Smith } else { 282562471d69SBarry Smith *newmat = B; 282662471d69SBarry Smith } 28273ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 282862471d69SBarry Smith } 282962471d69SBarry Smith 28300bad9183SKris Buschelman /*MC 2831fafad747SKris Buschelman MATMPIBAIJ - MATMPIBAIJ = "mpibaij" - A matrix type to be used for distributed block sparse matrices. 28320bad9183SKris Buschelman 28330bad9183SKris Buschelman Options Database Keys: 283411a5261eSBarry Smith + -mat_type mpibaij - sets the matrix type to `MATMPIBAIJ` during a call to `MatSetFromOptions()` 28358c07d4e3SBarry Smith . -mat_block_size <bs> - set the blocksize used to store the matrix 28366679dcc1SBarry Smith . -mat_baij_mult_version version - indicate the version of the matrix-vector product to use (0 often indicates using BLAS) 283767b8a455SSatish Balay - -mat_use_hash_table <fact> - set hash table factor 28380bad9183SKris Buschelman 28390bad9183SKris Buschelman Level: beginner 28400cd7f59aSBarry Smith 284111a5261eSBarry Smith Note: 28425e0ad47dSPierre Jolivet `MatSetOption(A, MAT_STRUCTURE_ONLY, PETSC_TRUE)` may be called for this matrix type. In this no 284311a5261eSBarry Smith space is allocated for the nonzero entries and any entries passed with `MatSetValues()` are ignored 28440bad9183SKris Buschelman 28455e0ad47dSPierre Jolivet .seealso: `Mat`, `MATBAIJ`, `MATSEQBAIJ`, `MatCreateBAIJ` 28460bad9183SKris Buschelman M*/ 28470bad9183SKris Buschelman 2848cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIBAIJ_MPIBSTRM(Mat, MatType, MatReuse, Mat *); 2849c0cdd4a1SDahai Guo 2850d71ae5a4SJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatCreate_MPIBAIJ(Mat B) 2851d71ae5a4SJacob Faibussowitsch { 2852273d9f13SBarry Smith Mat_MPIBAIJ *b; 285394ae4db5SBarry Smith PetscBool flg = PETSC_FALSE; 2854273d9f13SBarry Smith 2855273d9f13SBarry Smith PetscFunctionBegin; 28564dfa11a4SJacob Faibussowitsch PetscCall(PetscNew(&b)); 285782502324SSatish Balay B->data = (void *)b; 2858aea10558SJacob Faibussowitsch B->ops[0] = MatOps_Values; 2859273d9f13SBarry Smith B->assembled = PETSC_FALSE; 2860273d9f13SBarry Smith 2861273d9f13SBarry Smith B->insertmode = NOT_SET_VALUES; 28629566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)B), &b->rank)); 28639566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)B), &b->size)); 2864273d9f13SBarry Smith 2865273d9f13SBarry Smith /* build local table of row and column ownerships */ 28669566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(b->size + 1, &b->rangebs)); 2867273d9f13SBarry Smith 2868273d9f13SBarry Smith /* build cache for off array entries formed */ 28699566063dSJacob Faibussowitsch PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)B), 1, &B->stash)); 287026fbe8dcSKarl Rupp 2871273d9f13SBarry Smith b->donotstash = PETSC_FALSE; 28720298fd71SBarry Smith b->colmap = NULL; 28730298fd71SBarry Smith b->garray = NULL; 2874273d9f13SBarry Smith b->roworiented = PETSC_TRUE; 2875273d9f13SBarry Smith 2876273d9f13SBarry Smith /* stuff used in block assembly */ 2877f4259b30SLisandro Dalcin b->barray = NULL; 2878273d9f13SBarry Smith 2879273d9f13SBarry Smith /* stuff used for matrix vector multiply */ 2880f4259b30SLisandro Dalcin b->lvec = NULL; 2881f4259b30SLisandro Dalcin b->Mvctx = NULL; 2882273d9f13SBarry Smith 2883273d9f13SBarry Smith /* stuff for MatGetRow() */ 2884f4259b30SLisandro Dalcin b->rowindices = NULL; 2885f4259b30SLisandro Dalcin b->rowvalues = NULL; 2886273d9f13SBarry Smith b->getrowactive = PETSC_FALSE; 2887273d9f13SBarry Smith 2888273d9f13SBarry Smith /* hash table stuff */ 2889f4259b30SLisandro Dalcin b->ht = NULL; 2890f4259b30SLisandro Dalcin b->hd = NULL; 2891273d9f13SBarry Smith b->ht_size = 0; 2892273d9f13SBarry Smith b->ht_flag = PETSC_FALSE; 2893273d9f13SBarry Smith b->ht_fact = 0; 2894273d9f13SBarry Smith b->ht_total_ct = 0; 2895273d9f13SBarry Smith b->ht_insert_ct = 0; 2896273d9f13SBarry Smith 28977dae84e0SHong Zhang /* stuff for MatCreateSubMatrices_MPIBAIJ_local() */ 28987a868f3eSHong Zhang b->ijonly = PETSC_FALSE; 28997a868f3eSHong Zhang 29009566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpibaij_mpiadj_C", MatConvert_MPIBAIJ_MPIAdj)); 29019566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpibaij_mpiaij_C", MatConvert_MPIBAIJ_MPIAIJ)); 29029566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpibaij_mpisbaij_C", MatConvert_MPIBAIJ_MPISBAIJ)); 29037ea3e4caSstefano_zampini #if defined(PETSC_HAVE_HYPRE) 29049566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpibaij_hypre_C", MatConvert_AIJ_HYPRE)); 29057ea3e4caSstefano_zampini #endif 29069566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatStoreValues_C", MatStoreValues_MPIBAIJ)); 29079566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatRetrieveValues_C", MatRetrieveValues_MPIBAIJ)); 29089566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMPIBAIJSetPreallocation_C", MatMPIBAIJSetPreallocation_MPIBAIJ)); 29099566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMPIBAIJSetPreallocationCSR_C", MatMPIBAIJSetPreallocationCSR_MPIBAIJ)); 29109566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatDiagonalScaleLocal_C", MatDiagonalScaleLocal_MPIBAIJ)); 29119566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatSetHashTableFactor_C", MatSetHashTableFactor_MPIBAIJ)); 29129566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpibaij_is_C", MatConvert_XAIJ_IS)); 29139566063dSJacob Faibussowitsch PetscCall(PetscObjectChangeTypeName((PetscObject)B, MATMPIBAIJ)); 291494ae4db5SBarry Smith 2915d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)B), NULL, "Options for loading MPIBAIJ matrix 1", "Mat"); 29169566063dSJacob Faibussowitsch PetscCall(PetscOptionsName("-mat_use_hash_table", "Use hash table to save time in constructing matrix", "MatSetOption", &flg)); 291794ae4db5SBarry Smith if (flg) { 291894ae4db5SBarry Smith PetscReal fact = 1.39; 29199566063dSJacob Faibussowitsch PetscCall(MatSetOption(B, MAT_USE_HASH_TABLE, PETSC_TRUE)); 29209566063dSJacob Faibussowitsch PetscCall(PetscOptionsReal("-mat_use_hash_table", "Use hash table factor", "MatMPIBAIJSetHashTableFactor", fact, &fact, NULL)); 292194ae4db5SBarry Smith if (fact <= 1.0) fact = 1.39; 29229566063dSJacob Faibussowitsch PetscCall(MatMPIBAIJSetHashTableFactor(B, fact)); 29239566063dSJacob Faibussowitsch PetscCall(PetscInfo(B, "Hash table Factor used %5.2g\n", (double)fact)); 292494ae4db5SBarry Smith } 2925d0609cedSBarry Smith PetscOptionsEnd(); 29263ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2927273d9f13SBarry Smith } 2928273d9f13SBarry Smith 29292920cce0SJacob Faibussowitsch // PetscClangLinter pragma disable: -fdoc-section-header-unknown 2930209238afSKris Buschelman /*MC 2931002d173eSKris Buschelman MATBAIJ - MATBAIJ = "baij" - A matrix type to be used for block sparse matrices. 2932209238afSKris Buschelman 293311a5261eSBarry Smith This matrix type is identical to `MATSEQBAIJ` when constructed with a single process communicator, 293411a5261eSBarry Smith and `MATMPIBAIJ` otherwise. 2935209238afSKris Buschelman 2936209238afSKris Buschelman Options Database Keys: 293711a5261eSBarry Smith . -mat_type baij - sets the matrix type to `MATBAIJ` during a call to `MatSetFromOptions()` 2938209238afSKris Buschelman 2939209238afSKris Buschelman Level: beginner 2940209238afSKris Buschelman 294167be906fSBarry Smith .seealso: `Mat`, `MatCreateBAIJ()`, `MATSEQBAIJ`, `MATMPIBAIJ`, `MatMPIBAIJSetPreallocation()`, `MatMPIBAIJSetPreallocationCSR()` 2942209238afSKris Buschelman M*/ 2943209238afSKris Buschelman 29445d83a8b1SBarry Smith /*@ 294511a5261eSBarry Smith MatMPIBAIJSetPreallocation - Allocates memory for a sparse parallel matrix in `MATMPIBAIJ` format 294667be906fSBarry Smith (block compressed row). 2947273d9f13SBarry Smith 2948c3339decSBarry Smith Collective 2949273d9f13SBarry Smith 2950273d9f13SBarry Smith Input Parameters: 29511c4f3114SJed Brown + B - the matrix 295211a5261eSBarry Smith . bs - size of block, the blocks are ALWAYS square. One can use `MatSetBlockSizes()` to set a different row and column blocksize but the row 295367be906fSBarry Smith blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with `MatCreateVecs()` 2954273d9f13SBarry Smith . d_nz - number of block nonzeros per block row in diagonal portion of local 2955273d9f13SBarry Smith submatrix (same for all local rows) 2956273d9f13SBarry Smith . d_nnz - array containing the number of block nonzeros in the various block rows 2957273d9f13SBarry Smith of the in diagonal portion of the local (possibly different for each block 295867be906fSBarry Smith row) or `NULL`. If you plan to factor the matrix you must leave room for the diagonal entry and 295995742e49SBarry Smith set it even if it is zero. 2960273d9f13SBarry Smith . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 2961273d9f13SBarry Smith submatrix (same for all local rows). 2962273d9f13SBarry Smith - o_nnz - array containing the number of nonzeros in the various block rows of the 2963273d9f13SBarry Smith off-diagonal portion of the local submatrix (possibly different for 296467be906fSBarry Smith each block row) or `NULL`. 2965273d9f13SBarry Smith 296649a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 2967273d9f13SBarry Smith 2968273d9f13SBarry Smith Options Database Keys: 29698c07d4e3SBarry Smith + -mat_block_size - size of the blocks to use 297067b8a455SSatish Balay - -mat_use_hash_table <fact> - set hash table factor 2971273d9f13SBarry Smith 297267be906fSBarry Smith Level: intermediate 297367be906fSBarry Smith 2974273d9f13SBarry Smith Notes: 297567be906fSBarry Smith For good matrix assembly performance 297667be906fSBarry Smith the user should preallocate the matrix storage by setting the parameters 297767be906fSBarry Smith `d_nz` (or `d_nnz`) and `o_nz` (or `o_nnz`). By setting these parameters accurately, 297867be906fSBarry Smith performance can be increased by more than a factor of 50. 297967be906fSBarry Smith 298011a5261eSBarry Smith If `PETSC_DECIDE` or `PETSC_DETERMINE` is used for a particular argument on one processor 2981273d9f13SBarry Smith than it must be used on all processors that share the object for that argument. 2982273d9f13SBarry Smith 2983273d9f13SBarry Smith Storage Information: 2984273d9f13SBarry Smith For a square global matrix we define each processor's diagonal portion 2985273d9f13SBarry Smith to be its local rows and the corresponding columns (a square submatrix); 2986273d9f13SBarry Smith each processor's off-diagonal portion encompasses the remainder of the 2987273d9f13SBarry Smith local matrix (a rectangular submatrix). 2988273d9f13SBarry Smith 2989273d9f13SBarry Smith The user can specify preallocated storage for the diagonal part of 299067be906fSBarry Smith the local submatrix with either `d_nz` or `d_nnz` (not both). Set 299167be906fSBarry Smith `d_nz` = `PETSC_DEFAULT` and `d_nnz` = `NULL` for PETSc to control dynamic 2992273d9f13SBarry Smith memory allocation. Likewise, specify preallocated storage for the 299367be906fSBarry Smith off-diagonal part of the local submatrix with `o_nz` or `o_nnz` (not both). 2994273d9f13SBarry Smith 2995273d9f13SBarry Smith Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 2996273d9f13SBarry Smith the figure below we depict these three local rows and all columns (0-11). 2997273d9f13SBarry Smith 2998273d9f13SBarry Smith .vb 2999273d9f13SBarry Smith 0 1 2 3 4 5 6 7 8 9 10 11 3000a4b1a0f6SJed Brown -------------------------- 3001273d9f13SBarry Smith row 3 |o o o d d d o o o o o o 3002273d9f13SBarry Smith row 4 |o o o d d d o o o o o o 3003273d9f13SBarry Smith row 5 |o o o d d d o o o o o o 3004a4b1a0f6SJed Brown -------------------------- 3005273d9f13SBarry Smith .ve 3006273d9f13SBarry Smith 3007273d9f13SBarry Smith Thus, any entries in the d locations are stored in the d (diagonal) 3008273d9f13SBarry Smith submatrix, and any entries in the o locations are stored in the 3009273d9f13SBarry Smith o (off-diagonal) submatrix. Note that the d and the o submatrices are 301011a5261eSBarry Smith stored simply in the `MATSEQBAIJ` format for compressed row storage. 3011273d9f13SBarry Smith 301267be906fSBarry Smith Now `d_nz` should indicate the number of block nonzeros per row in the d matrix, 301367be906fSBarry Smith and `o_nz` should indicate the number of block nonzeros per row in the o matrix. 3014273d9f13SBarry Smith In general, for PDE problems in which most nonzeros are near the diagonal, 301520f4b53cSBarry Smith one expects `d_nz` >> `o_nz`. 3016273d9f13SBarry Smith 301711a5261eSBarry Smith You can call `MatGetInfo()` to get information on how effective the preallocation was; 3018aa95bbe8SBarry Smith for example the fields mallocs,nz_allocated,nz_used,nz_unneeded; 301967be906fSBarry Smith You can also run with the option `-info` and look for messages with the string 3020aa95bbe8SBarry Smith malloc in them to see if additional memory allocation was needed. 3021aa95bbe8SBarry Smith 302267be906fSBarry Smith .seealso: `Mat`, `MATMPIBAIJ`, `MatCreate()`, `MatCreateSeqBAIJ()`, `MatSetValues()`, `MatCreateBAIJ()`, `MatMPIBAIJSetPreallocationCSR()`, `PetscSplitOwnership()` 3023273d9f13SBarry Smith @*/ 3024d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIBAIJSetPreallocation(Mat B, PetscInt bs, PetscInt d_nz, const PetscInt d_nnz[], PetscInt o_nz, const PetscInt o_nnz[]) 3025d71ae5a4SJacob Faibussowitsch { 3026273d9f13SBarry Smith PetscFunctionBegin; 30276ba663aaSJed Brown PetscValidHeaderSpecific(B, MAT_CLASSID, 1); 30286ba663aaSJed Brown PetscValidType(B, 1); 30296ba663aaSJed Brown PetscValidLogicalCollectiveInt(B, bs, 2); 3030cac4c232SBarry Smith PetscTryMethod(B, "MatMPIBAIJSetPreallocation_C", (Mat, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[]), (B, bs, d_nz, d_nnz, o_nz, o_nnz)); 30313ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3032273d9f13SBarry Smith } 3033273d9f13SBarry Smith 30342920cce0SJacob Faibussowitsch // PetscClangLinter pragma disable: -fdoc-section-header-unknown 30355d83a8b1SBarry Smith /*@ 303611a5261eSBarry Smith MatCreateBAIJ - Creates a sparse parallel matrix in `MATBAIJ` format 303767be906fSBarry Smith (block compressed row). 303879bdfe76SSatish Balay 3039d083f849SBarry Smith Collective 3040db81eaa0SLois Curfman McInnes 304179bdfe76SSatish Balay Input Parameters: 3042db81eaa0SLois Curfman McInnes + comm - MPI communicator 304311a5261eSBarry Smith . bs - size of block, the blocks are ALWAYS square. One can use `MatSetBlockSizes()` to set a different row and column blocksize but the row 304411a5261eSBarry Smith blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with `MatCreateVecs()` 304511a5261eSBarry Smith . m - number of local rows (or `PETSC_DECIDE` to have calculated if M is given) 304692e8d321SLois Curfman McInnes This value should be the same as the local size used in creating the 304792e8d321SLois Curfman McInnes y vector for the matrix-vector product y = Ax. 304811a5261eSBarry Smith . n - number of local columns (or `PETSC_DECIDE` to have calculated if N is given) 304992e8d321SLois Curfman McInnes This value should be the same as the local size used in creating the 305092e8d321SLois Curfman McInnes x vector for the matrix-vector product y = Ax. 305111a5261eSBarry Smith . M - number of global rows (or `PETSC_DETERMINE` to have calculated if m is given) 305211a5261eSBarry Smith . N - number of global columns (or `PETSC_DETERMINE` to have calculated if n is given) 305347a75d0bSBarry Smith . d_nz - number of nonzero blocks per block row in diagonal portion of local 305479bdfe76SSatish Balay submatrix (same for all local rows) 305547a75d0bSBarry Smith . d_nnz - array containing the number of nonzero blocks in the various block rows 305692e8d321SLois Curfman McInnes of the in diagonal portion of the local (possibly different for each block 30570298fd71SBarry Smith row) or NULL. If you plan to factor the matrix you must leave room for the diagonal entry 305895742e49SBarry Smith and set it even if it is zero. 305947a75d0bSBarry Smith . o_nz - number of nonzero blocks per block row in the off-diagonal portion of local 306079bdfe76SSatish Balay submatrix (same for all local rows). 306147a75d0bSBarry Smith - o_nnz - array containing the number of nonzero blocks in the various block rows of the 306292e8d321SLois Curfman McInnes off-diagonal portion of the local submatrix (possibly different for 30630298fd71SBarry Smith each block row) or NULL. 306479bdfe76SSatish Balay 306579bdfe76SSatish Balay Output Parameter: 306679bdfe76SSatish Balay . A - the matrix 306779bdfe76SSatish Balay 3068db81eaa0SLois Curfman McInnes Options Database Keys: 30698c07d4e3SBarry Smith + -mat_block_size - size of the blocks to use 307067b8a455SSatish Balay - -mat_use_hash_table <fact> - set hash table factor 30713ffaccefSLois Curfman McInnes 307267be906fSBarry Smith Level: intermediate 307367be906fSBarry Smith 307467be906fSBarry Smith Notes: 307577433607SBarry Smith It is recommended that one use `MatCreateFromOptions()` or the `MatCreate()`, `MatSetType()` and/or `MatSetFromOptions()`, 307677433607SBarry Smith MatXXXXSetPreallocation() paradigm instead of this routine directly. 307777433607SBarry Smith [MatXXXXSetPreallocation() is, for example, `MatSeqBAIJSetPreallocation()`] 307877433607SBarry Smith 307967be906fSBarry Smith For good matrix assembly performance 308067be906fSBarry Smith the user should preallocate the matrix storage by setting the parameters 308167be906fSBarry Smith `d_nz` (or `d_nnz`) and `o_nz` (or `o_nnz`). By setting these parameters accurately, 308267be906fSBarry Smith performance can be increased by more than a factor of 50. 308367be906fSBarry Smith 308449a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 308549a6f317SBarry Smith 308647a75d0bSBarry Smith A nonzero block is any block that as 1 or more nonzeros in it 308747a75d0bSBarry Smith 308879bdfe76SSatish Balay The user MUST specify either the local or global matrix dimensions 308979bdfe76SSatish Balay (possibly both). 309079bdfe76SSatish Balay 309111a5261eSBarry Smith If `PETSC_DECIDE` or `PETSC_DETERMINE` is used for a particular argument on one processor 3092be79a94dSBarry Smith than it must be used on all processors that share the object for that argument. 3093be79a94dSBarry Smith 3094727bdf9bSBarry Smith If `m` and `n` are not `PETSC_DECIDE`, then the values determine the `PetscLayout` of the matrix and the ranges returned by 3095727bdf9bSBarry Smith `MatGetOwnershipRange()`, `MatGetOwnershipRanges()`, `MatGetOwnershipRangeColumn()`, and `MatGetOwnershipRangesColumn()`. 3096727bdf9bSBarry Smith 309779bdfe76SSatish Balay Storage Information: 309879bdfe76SSatish Balay For a square global matrix we define each processor's diagonal portion 309979bdfe76SSatish Balay to be its local rows and the corresponding columns (a square submatrix); 310079bdfe76SSatish Balay each processor's off-diagonal portion encompasses the remainder of the 310179bdfe76SSatish Balay local matrix (a rectangular submatrix). 310279bdfe76SSatish Balay 310379bdfe76SSatish Balay The user can specify preallocated storage for the diagonal part of 310479bdfe76SSatish Balay the local submatrix with either d_nz or d_nnz (not both). Set 310567be906fSBarry Smith `d_nz` = `PETSC_DEFAULT` and `d_nnz` = `NULL` for PETSc to control dynamic 310679bdfe76SSatish Balay memory allocation. Likewise, specify preallocated storage for the 310767be906fSBarry Smith off-diagonal part of the local submatrix with `o_nz` or `o_nnz` (not both). 310879bdfe76SSatish Balay 310979bdfe76SSatish Balay Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 311079bdfe76SSatish Balay the figure below we depict these three local rows and all columns (0-11). 311179bdfe76SSatish Balay 3112db81eaa0SLois Curfman McInnes .vb 3113db81eaa0SLois Curfman McInnes 0 1 2 3 4 5 6 7 8 9 10 11 3114a4b1a0f6SJed Brown -------------------------- 3115db81eaa0SLois Curfman McInnes row 3 |o o o d d d o o o o o o 3116db81eaa0SLois Curfman McInnes row 4 |o o o d d d o o o o o o 3117db81eaa0SLois Curfman McInnes row 5 |o o o d d d o o o o o o 3118a4b1a0f6SJed Brown -------------------------- 3119db81eaa0SLois Curfman McInnes .ve 312079bdfe76SSatish Balay 312179bdfe76SSatish Balay Thus, any entries in the d locations are stored in the d (diagonal) 312279bdfe76SSatish Balay submatrix, and any entries in the o locations are stored in the 312379bdfe76SSatish Balay o (off-diagonal) submatrix. Note that the d and the o submatrices are 312411a5261eSBarry Smith stored simply in the `MATSEQBAIJ` format for compressed row storage. 312579bdfe76SSatish Balay 312667be906fSBarry Smith Now `d_nz` should indicate the number of block nonzeros per row in the d matrix, 312767be906fSBarry Smith and `o_nz` should indicate the number of block nonzeros per row in the o matrix. 312879bdfe76SSatish Balay In general, for PDE problems in which most nonzeros are near the diagonal, 312920f4b53cSBarry Smith one expects `d_nz` >> `o_nz`. 313079bdfe76SSatish Balay 3131727bdf9bSBarry Smith .seealso: `Mat`, `MatCreate()`, `MatCreateSeqBAIJ()`, `MatSetValues()`, `MatMPIBAIJSetPreallocation()`, `MatMPIBAIJSetPreallocationCSR()`, 3132727bdf9bSBarry Smith `MatGetOwnershipRange()`, `MatGetOwnershipRanges()`, `MatGetOwnershipRangeColumn()`, `MatGetOwnershipRangesColumn()`, `PetscLayout` 313379bdfe76SSatish Balay @*/ 3134d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateBAIJ(MPI_Comm comm, PetscInt bs, PetscInt m, PetscInt n, PetscInt M, PetscInt N, PetscInt d_nz, const PetscInt d_nnz[], PetscInt o_nz, const PetscInt o_nnz[], Mat *A) 3135d71ae5a4SJacob Faibussowitsch { 3136b24ad042SBarry Smith PetscMPIInt size; 313779bdfe76SSatish Balay 3138d64ed03dSBarry Smith PetscFunctionBegin; 31399566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, A)); 31409566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*A, m, n, M, N)); 31419566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 3142273d9f13SBarry Smith if (size > 1) { 31439566063dSJacob Faibussowitsch PetscCall(MatSetType(*A, MATMPIBAIJ)); 31449566063dSJacob Faibussowitsch PetscCall(MatMPIBAIJSetPreallocation(*A, bs, d_nz, d_nnz, o_nz, o_nnz)); 3145273d9f13SBarry Smith } else { 31469566063dSJacob Faibussowitsch PetscCall(MatSetType(*A, MATSEQBAIJ)); 31479566063dSJacob Faibussowitsch PetscCall(MatSeqBAIJSetPreallocation(*A, bs, d_nz, d_nnz)); 31483914022bSBarry Smith } 31493ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 315079bdfe76SSatish Balay } 3151026e39d0SSatish Balay 3152d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatDuplicate_MPIBAIJ(Mat matin, MatDuplicateOption cpvalues, Mat *newmat) 3153d71ae5a4SJacob Faibussowitsch { 31540ac07820SSatish Balay Mat mat; 31550ac07820SSatish Balay Mat_MPIBAIJ *a, *oldmat = (Mat_MPIBAIJ *)matin->data; 3156b24ad042SBarry Smith PetscInt len = 0; 31570ac07820SSatish Balay 3158d64ed03dSBarry Smith PetscFunctionBegin; 3159f4259b30SLisandro Dalcin *newmat = NULL; 31609566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)matin), &mat)); 31619566063dSJacob Faibussowitsch PetscCall(MatSetSizes(mat, matin->rmap->n, matin->cmap->n, matin->rmap->N, matin->cmap->N)); 31629566063dSJacob Faibussowitsch PetscCall(MatSetType(mat, ((PetscObject)matin)->type_name)); 31637fff6886SHong Zhang 3164420957c1SBarry Smith PetscCall(PetscLayoutReference(matin->rmap, &mat->rmap)); 3165420957c1SBarry Smith PetscCall(PetscLayoutReference(matin->cmap, &mat->cmap)); 3166420957c1SBarry Smith if (matin->hash_active) { 3167420957c1SBarry Smith PetscCall(MatSetUp(mat)); 3168420957c1SBarry Smith } else { 3169d5f3da31SBarry Smith mat->factortype = matin->factortype; 3170273d9f13SBarry Smith mat->preallocated = PETSC_TRUE; 31710ac07820SSatish Balay mat->assembled = PETSC_TRUE; 31727fff6886SHong Zhang mat->insertmode = NOT_SET_VALUES; 31737fff6886SHong Zhang 3174273d9f13SBarry Smith a = (Mat_MPIBAIJ *)mat->data; 3175d0f46423SBarry Smith mat->rmap->bs = matin->rmap->bs; 31760ac07820SSatish Balay a->bs2 = oldmat->bs2; 31770ac07820SSatish Balay a->mbs = oldmat->mbs; 31780ac07820SSatish Balay a->nbs = oldmat->nbs; 31790ac07820SSatish Balay a->Mbs = oldmat->Mbs; 31800ac07820SSatish Balay a->Nbs = oldmat->Nbs; 31810ac07820SSatish Balay 31820ac07820SSatish Balay a->size = oldmat->size; 31830ac07820SSatish Balay a->rank = oldmat->rank; 3184aef5e8e0SSatish Balay a->donotstash = oldmat->donotstash; 3185aef5e8e0SSatish Balay a->roworiented = oldmat->roworiented; 3186f4259b30SLisandro Dalcin a->rowindices = NULL; 3187f4259b30SLisandro Dalcin a->rowvalues = NULL; 31880ac07820SSatish Balay a->getrowactive = PETSC_FALSE; 3189f4259b30SLisandro Dalcin a->barray = NULL; 3190899cda47SBarry Smith a->rstartbs = oldmat->rstartbs; 3191899cda47SBarry Smith a->rendbs = oldmat->rendbs; 3192899cda47SBarry Smith a->cstartbs = oldmat->cstartbs; 3193899cda47SBarry Smith a->cendbs = oldmat->cendbs; 31940ac07820SSatish Balay 3195133cdb44SSatish Balay /* hash table stuff */ 3196f4259b30SLisandro Dalcin a->ht = NULL; 3197f4259b30SLisandro Dalcin a->hd = NULL; 3198133cdb44SSatish Balay a->ht_size = 0; 3199133cdb44SSatish Balay a->ht_flag = oldmat->ht_flag; 320025fdafccSSatish Balay a->ht_fact = oldmat->ht_fact; 3201133cdb44SSatish Balay a->ht_total_ct = 0; 3202133cdb44SSatish Balay a->ht_insert_ct = 0; 3203133cdb44SSatish Balay 32049566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(a->rangebs, oldmat->rangebs, a->size + 1)); 32050ac07820SSatish Balay if (oldmat->colmap) { 3206aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 3207eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIDuplicate(oldmat->colmap, &a->colmap)); 320848e59246SSatish Balay #else 32099566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(a->Nbs, &a->colmap)); 32109566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(a->colmap, oldmat->colmap, a->Nbs)); 321148e59246SSatish Balay #endif 3212f4259b30SLisandro Dalcin } else a->colmap = NULL; 32134beb1cfeSHong Zhang 3214f4f49eeaSPierre Jolivet if (oldmat->garray && (len = ((Mat_SeqBAIJ *)oldmat->B->data)->nbs)) { 32159566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(len, &a->garray)); 32169566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(a->garray, oldmat->garray, len)); 3217f4259b30SLisandro Dalcin } else a->garray = NULL; 32180ac07820SSatish Balay 32199566063dSJacob Faibussowitsch PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)matin), matin->rmap->bs, &mat->bstash)); 32209566063dSJacob Faibussowitsch PetscCall(VecDuplicate(oldmat->lvec, &a->lvec)); 32219566063dSJacob Faibussowitsch PetscCall(VecScatterCopy(oldmat->Mvctx, &a->Mvctx)); 32227fff6886SHong Zhang 32239566063dSJacob Faibussowitsch PetscCall(MatDuplicate(oldmat->A, cpvalues, &a->A)); 32249566063dSJacob Faibussowitsch PetscCall(MatDuplicate(oldmat->B, cpvalues, &a->B)); 3225420957c1SBarry Smith } 32269566063dSJacob Faibussowitsch PetscCall(PetscFunctionListDuplicate(((PetscObject)matin)->qlist, &((PetscObject)mat)->qlist)); 32270ac07820SSatish Balay *newmat = mat; 32283ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 32290ac07820SSatish Balay } 323057b952d6SSatish Balay 3231618cc2edSLisandro Dalcin /* Used for both MPIBAIJ and MPISBAIJ matrices */ 3232d71ae5a4SJacob Faibussowitsch PetscErrorCode MatLoad_MPIBAIJ_Binary(Mat mat, PetscViewer viewer) 3233d71ae5a4SJacob Faibussowitsch { 3234b51a4376SLisandro Dalcin PetscInt header[4], M, N, nz, bs, m, n, mbs, nbs, rows, cols, sum, i, j, k; 3235b51a4376SLisandro Dalcin PetscInt *rowidxs, *colidxs, rs, cs, ce; 3236b51a4376SLisandro Dalcin PetscScalar *matvals; 3237b51a4376SLisandro Dalcin 3238b51a4376SLisandro Dalcin PetscFunctionBegin; 32399566063dSJacob Faibussowitsch PetscCall(PetscViewerSetUp(viewer)); 3240b51a4376SLisandro Dalcin 3241b51a4376SLisandro Dalcin /* read in matrix header */ 32429566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryRead(viewer, header, 4, NULL, PETSC_INT)); 32435f80ce2aSJacob Faibussowitsch PetscCheck(header[0] == MAT_FILE_CLASSID, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Not a matrix object in file"); 32449371c9d4SSatish Balay M = header[1]; 32459371c9d4SSatish Balay N = header[2]; 32469371c9d4SSatish Balay nz = header[3]; 32475f80ce2aSJacob Faibussowitsch PetscCheck(M >= 0, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Matrix row size (%" PetscInt_FMT ") in file is negative", M); 32485f80ce2aSJacob Faibussowitsch PetscCheck(N >= 0, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Matrix column size (%" PetscInt_FMT ") in file is negative", N); 32495f80ce2aSJacob Faibussowitsch PetscCheck(nz >= 0, PETSC_COMM_SELF, PETSC_ERR_FILE_UNEXPECTED, "Matrix stored in special format on disk, cannot load as MPIBAIJ"); 3250b51a4376SLisandro Dalcin 3251b51a4376SLisandro Dalcin /* set block sizes from the viewer's .info file */ 32529566063dSJacob Faibussowitsch PetscCall(MatLoad_Binary_BlockSizes(mat, viewer)); 3253618cc2edSLisandro Dalcin /* set local sizes if not set already */ 3254618cc2edSLisandro Dalcin if (mat->rmap->n < 0 && M == N) mat->rmap->n = mat->cmap->n; 3255618cc2edSLisandro Dalcin if (mat->cmap->n < 0 && M == N) mat->cmap->n = mat->rmap->n; 3256b51a4376SLisandro Dalcin /* set global sizes if not set already */ 3257b51a4376SLisandro Dalcin if (mat->rmap->N < 0) mat->rmap->N = M; 3258b51a4376SLisandro Dalcin if (mat->cmap->N < 0) mat->cmap->N = N; 32599566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(mat->rmap)); 32609566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(mat->cmap)); 3261b51a4376SLisandro Dalcin 3262b51a4376SLisandro Dalcin /* check if the matrix sizes are correct */ 32639566063dSJacob Faibussowitsch PetscCall(MatGetSize(mat, &rows, &cols)); 32645f80ce2aSJacob Faibussowitsch PetscCheck(M == rows && N == cols, PETSC_COMM_SELF, PETSC_ERR_FILE_UNEXPECTED, "Matrix in file of different sizes (%" PetscInt_FMT ", %" PetscInt_FMT ") than the input matrix (%" PetscInt_FMT ", %" PetscInt_FMT ")", M, N, rows, cols); 32659566063dSJacob Faibussowitsch PetscCall(MatGetBlockSize(mat, &bs)); 32669566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(mat, &m, &n)); 32679566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetRange(mat->rmap, &rs, NULL)); 32689566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetRange(mat->cmap, &cs, &ce)); 32699371c9d4SSatish Balay mbs = m / bs; 32709371c9d4SSatish Balay nbs = n / bs; 3271b51a4376SLisandro Dalcin 3272b51a4376SLisandro Dalcin /* read in row lengths and build row indices */ 32739566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m + 1, &rowidxs)); 32749566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryReadAll(viewer, rowidxs + 1, m, PETSC_DECIDE, M, PETSC_INT)); 32759371c9d4SSatish Balay rowidxs[0] = 0; 32769371c9d4SSatish Balay for (i = 0; i < m; i++) rowidxs[i + 1] += rowidxs[i]; 3277462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&rowidxs[m], &sum, 1, MPIU_INT, MPI_SUM, PetscObjectComm((PetscObject)viewer))); 32785f80ce2aSJacob Faibussowitsch PetscCheck(sum == nz, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Inconsistent matrix data in file: nonzeros = %" PetscInt_FMT ", sum-row-lengths = %" PetscInt_FMT, nz, sum); 3279b51a4376SLisandro Dalcin 3280b51a4376SLisandro Dalcin /* read in column indices and matrix values */ 32819566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(rowidxs[m], &colidxs, rowidxs[m], &matvals)); 32829566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryReadAll(viewer, colidxs, rowidxs[m], PETSC_DETERMINE, PETSC_DETERMINE, PETSC_INT)); 32839566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryReadAll(viewer, matvals, rowidxs[m], PETSC_DETERMINE, PETSC_DETERMINE, PETSC_SCALAR)); 3284b51a4376SLisandro Dalcin 3285b51a4376SLisandro Dalcin { /* preallocate matrix storage */ 3286b51a4376SLisandro Dalcin PetscBT bt; /* helper bit set to count diagonal nonzeros */ 3287b51a4376SLisandro Dalcin PetscHSetI ht; /* helper hash set to count off-diagonal nonzeros */ 3288618cc2edSLisandro Dalcin PetscBool sbaij, done; 3289b51a4376SLisandro Dalcin PetscInt *d_nnz, *o_nnz; 3290b51a4376SLisandro Dalcin 32919566063dSJacob Faibussowitsch PetscCall(PetscBTCreate(nbs, &bt)); 32929566063dSJacob Faibussowitsch PetscCall(PetscHSetICreate(&ht)); 32939566063dSJacob Faibussowitsch PetscCall(PetscCalloc2(mbs, &d_nnz, mbs, &o_nnz)); 32949566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)mat, MATMPISBAIJ, &sbaij)); 3295b51a4376SLisandro Dalcin for (i = 0; i < mbs; i++) { 32969566063dSJacob Faibussowitsch PetscCall(PetscBTMemzero(nbs, bt)); 32979566063dSJacob Faibussowitsch PetscCall(PetscHSetIClear(ht)); 3298618cc2edSLisandro Dalcin for (k = 0; k < bs; k++) { 3299618cc2edSLisandro Dalcin PetscInt row = bs * i + k; 3300618cc2edSLisandro Dalcin for (j = rowidxs[row]; j < rowidxs[row + 1]; j++) { 3301618cc2edSLisandro Dalcin PetscInt col = colidxs[j]; 3302618cc2edSLisandro Dalcin if (!sbaij || col >= row) { 3303618cc2edSLisandro Dalcin if (col >= cs && col < ce) { 3304618cc2edSLisandro Dalcin if (!PetscBTLookupSet(bt, (col - cs) / bs)) d_nnz[i]++; 3305b51a4376SLisandro Dalcin } else { 33069566063dSJacob Faibussowitsch PetscCall(PetscHSetIQueryAdd(ht, col / bs, &done)); 3307b51a4376SLisandro Dalcin if (done) o_nnz[i]++; 3308b51a4376SLisandro Dalcin } 3309b51a4376SLisandro Dalcin } 3310618cc2edSLisandro Dalcin } 3311618cc2edSLisandro Dalcin } 3312618cc2edSLisandro Dalcin } 33139566063dSJacob Faibussowitsch PetscCall(PetscBTDestroy(&bt)); 33149566063dSJacob Faibussowitsch PetscCall(PetscHSetIDestroy(&ht)); 33159566063dSJacob Faibussowitsch PetscCall(MatMPIBAIJSetPreallocation(mat, bs, 0, d_nnz, 0, o_nnz)); 33169566063dSJacob Faibussowitsch PetscCall(MatMPISBAIJSetPreallocation(mat, bs, 0, d_nnz, 0, o_nnz)); 33179566063dSJacob Faibussowitsch PetscCall(PetscFree2(d_nnz, o_nnz)); 3318b51a4376SLisandro Dalcin } 3319b51a4376SLisandro Dalcin 3320b51a4376SLisandro Dalcin /* store matrix values */ 3321b51a4376SLisandro Dalcin for (i = 0; i < m; i++) { 3322b51a4376SLisandro Dalcin PetscInt row = rs + i, s = rowidxs[i], e = rowidxs[i + 1]; 33239927e4dfSBarry Smith PetscUseTypeMethod(mat, setvalues, 1, &row, e - s, colidxs + s, matvals + s, INSERT_VALUES); 3324b51a4376SLisandro Dalcin } 3325b51a4376SLisandro Dalcin 33269566063dSJacob Faibussowitsch PetscCall(PetscFree(rowidxs)); 33279566063dSJacob Faibussowitsch PetscCall(PetscFree2(colidxs, matvals)); 33289566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(mat, MAT_FINAL_ASSEMBLY)); 33299566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(mat, MAT_FINAL_ASSEMBLY)); 33303ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3331b51a4376SLisandro Dalcin } 3332b51a4376SLisandro Dalcin 3333d71ae5a4SJacob Faibussowitsch PetscErrorCode MatLoad_MPIBAIJ(Mat mat, PetscViewer viewer) 3334d71ae5a4SJacob Faibussowitsch { 33357f489da9SVaclav Hapla PetscBool isbinary; 33364683f7a4SShri Abhyankar 33374683f7a4SShri Abhyankar PetscFunctionBegin; 33389566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary)); 33395f80ce2aSJacob Faibussowitsch PetscCheck(isbinary, PetscObjectComm((PetscObject)viewer), PETSC_ERR_SUP, "Viewer type %s not yet supported for reading %s matrices", ((PetscObject)viewer)->type_name, ((PetscObject)mat)->type_name); 33409566063dSJacob Faibussowitsch PetscCall(MatLoad_MPIBAIJ_Binary(mat, viewer)); 33413ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 33424683f7a4SShri Abhyankar } 33434683f7a4SShri Abhyankar 3344133cdb44SSatish Balay /*@ 334511a5261eSBarry Smith MatMPIBAIJSetHashTableFactor - Sets the factor required to compute the size of the matrices hash table 3346133cdb44SSatish Balay 3347133cdb44SSatish Balay Input Parameters: 3348a2b725a8SWilliam Gropp + mat - the matrix 3349a2b725a8SWilliam Gropp - fact - factor 3350133cdb44SSatish Balay 335111a5261eSBarry Smith Options Database Key: 335211a5261eSBarry Smith . -mat_use_hash_table <fact> - provide the factor 3353fee21e36SBarry Smith 33548c890885SBarry Smith Level: advanced 33558c890885SBarry Smith 335667be906fSBarry Smith .seealso: `Mat`, `MATMPIBAIJ`, `MatSetOption()` 3357133cdb44SSatish Balay @*/ 3358d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIBAIJSetHashTableFactor(Mat mat, PetscReal fact) 3359d71ae5a4SJacob Faibussowitsch { 33605bf65638SKris Buschelman PetscFunctionBegin; 3361cac4c232SBarry Smith PetscTryMethod(mat, "MatSetHashTableFactor_C", (Mat, PetscReal), (mat, fact)); 33623ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 33635bf65638SKris Buschelman } 33645bf65638SKris Buschelman 3365d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetHashTableFactor_MPIBAIJ(Mat mat, PetscReal fact) 3366d71ae5a4SJacob Faibussowitsch { 336725fdafccSSatish Balay Mat_MPIBAIJ *baij; 3368133cdb44SSatish Balay 3369133cdb44SSatish Balay PetscFunctionBegin; 3370133cdb44SSatish Balay baij = (Mat_MPIBAIJ *)mat->data; 3371133cdb44SSatish Balay baij->ht_fact = fact; 33723ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3373133cdb44SSatish Balay } 3374f2a5309cSSatish Balay 3375d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIBAIJGetSeqBAIJ(Mat A, Mat *Ad, Mat *Ao, const PetscInt *colmap[]) 3376d71ae5a4SJacob Faibussowitsch { 3377f2a5309cSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 3378ab4d48faSStefano Zampini PetscBool flg; 33795fd66863SKarl Rupp 3380f2a5309cSSatish Balay PetscFunctionBegin; 33819566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)A, MATMPIBAIJ, &flg)); 33825f80ce2aSJacob Faibussowitsch PetscCheck(flg, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "This function requires a MATMPIBAIJ matrix as input"); 338321e72a00SBarry Smith if (Ad) *Ad = a->A; 338421e72a00SBarry Smith if (Ao) *Ao = a->B; 338521e72a00SBarry Smith if (colmap) *colmap = a->garray; 33863ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3387f2a5309cSSatish Balay } 338885535b8eSBarry Smith 338985535b8eSBarry Smith /* 339085535b8eSBarry Smith Special version for direct calls from Fortran (to eliminate two function call overheads 339185535b8eSBarry Smith */ 339285535b8eSBarry Smith #if defined(PETSC_HAVE_FORTRAN_CAPS) 339385535b8eSBarry Smith #define matmpibaijsetvaluesblocked_ MATMPIBAIJSETVALUESBLOCKED 339485535b8eSBarry Smith #elif !defined(PETSC_HAVE_FORTRAN_UNDERSCORE) 339585535b8eSBarry Smith #define matmpibaijsetvaluesblocked_ matmpibaijsetvaluesblocked 339685535b8eSBarry Smith #endif 339785535b8eSBarry Smith 33982920cce0SJacob Faibussowitsch // PetscClangLinter pragma disable: -fdoc-synopsis-matching-symbol-name 339985535b8eSBarry Smith /*@C 340011a5261eSBarry Smith MatMPIBAIJSetValuesBlocked - Direct Fortran call to replace call to `MatSetValuesBlocked()` 340185535b8eSBarry Smith 3402c3339decSBarry Smith Collective 340385535b8eSBarry Smith 340485535b8eSBarry Smith Input Parameters: 3405fe59aa6dSJacob Faibussowitsch + matin - the matrix 340685535b8eSBarry Smith . min - number of input rows 340785535b8eSBarry Smith . im - input rows 340885535b8eSBarry Smith . nin - number of input columns 340985535b8eSBarry Smith . in - input columns 341085535b8eSBarry Smith . v - numerical values input 341111a5261eSBarry Smith - addvin - `INSERT_VALUES` or `ADD_VALUES` 341285535b8eSBarry Smith 341320f4b53cSBarry Smith Level: advanced 341420f4b53cSBarry Smith 3415fe59aa6dSJacob Faibussowitsch Developer Notes: 341611a5261eSBarry Smith This has a complete copy of `MatSetValuesBlocked_MPIBAIJ()` which is terrible code un-reuse. 341785535b8eSBarry Smith 341867be906fSBarry Smith .seealso: `Mat`, `MatSetValuesBlocked()` 341985535b8eSBarry Smith @*/ 342066976f2fSJacob Faibussowitsch PETSC_EXTERN PetscErrorCode matmpibaijsetvaluesblocked_(Mat *matin, PetscInt *min, const PetscInt im[], PetscInt *nin, const PetscInt in[], const MatScalar v[], InsertMode *addvin) 3421d71ae5a4SJacob Faibussowitsch { 342285535b8eSBarry Smith /* convert input arguments to C version */ 342385535b8eSBarry Smith Mat mat = *matin; 342485535b8eSBarry Smith PetscInt m = *min, n = *nin; 342585535b8eSBarry Smith InsertMode addv = *addvin; 342685535b8eSBarry Smith 342785535b8eSBarry Smith Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 342885535b8eSBarry Smith const MatScalar *value; 342985535b8eSBarry Smith MatScalar *barray = baij->barray; 3430ace3abfcSBarry Smith PetscBool roworiented = baij->roworiented; 343185535b8eSBarry Smith PetscInt i, j, ii, jj, row, col, rstart = baij->rstartbs; 343285535b8eSBarry Smith PetscInt rend = baij->rendbs, cstart = baij->cstartbs, stepval; 3433d0f46423SBarry Smith PetscInt cend = baij->cendbs, bs = mat->rmap->bs, bs2 = baij->bs2; 343485535b8eSBarry Smith 343585535b8eSBarry Smith PetscFunctionBegin; 343685535b8eSBarry Smith /* tasks normally handled by MatSetValuesBlocked() */ 343726fbe8dcSKarl Rupp if (mat->insertmode == NOT_SET_VALUES) mat->insertmode = addv; 34385f80ce2aSJacob Faibussowitsch else PetscCheck(mat->insertmode == addv, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Cannot mix add values and insert values"); 34395f80ce2aSJacob Faibussowitsch PetscCheck(!mat->factortype, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Not for factored matrix"); 344085535b8eSBarry Smith if (mat->assembled) { 344185535b8eSBarry Smith mat->was_assembled = PETSC_TRUE; 344285535b8eSBarry Smith mat->assembled = PETSC_FALSE; 344385535b8eSBarry Smith } 34449566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(MAT_SetValues, mat, 0, 0, 0)); 344585535b8eSBarry Smith 344685535b8eSBarry Smith if (!barray) { 34479566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(bs2, &barray)); 344885535b8eSBarry Smith baij->barray = barray; 344985535b8eSBarry Smith } 345085535b8eSBarry Smith 345126fbe8dcSKarl Rupp if (roworiented) stepval = (n - 1) * bs; 345226fbe8dcSKarl Rupp else stepval = (m - 1) * bs; 345326fbe8dcSKarl Rupp 345485535b8eSBarry Smith for (i = 0; i < m; i++) { 345585535b8eSBarry Smith if (im[i] < 0) continue; 34566bdcaf15SBarry Smith PetscCheck(im[i] < baij->Mbs, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large, row %" PetscInt_FMT " max %" PetscInt_FMT, im[i], baij->Mbs - 1); 345785535b8eSBarry Smith if (im[i] >= rstart && im[i] < rend) { 345885535b8eSBarry Smith row = im[i] - rstart; 345985535b8eSBarry Smith for (j = 0; j < n; j++) { 346085535b8eSBarry Smith /* If NumCol = 1 then a copy is not required */ 346185535b8eSBarry Smith if ((roworiented) && (n == 1)) { 346285535b8eSBarry Smith barray = (MatScalar *)v + i * bs2; 346385535b8eSBarry Smith } else if ((!roworiented) && (m == 1)) { 346485535b8eSBarry Smith barray = (MatScalar *)v + j * bs2; 346585535b8eSBarry Smith } else { /* Here a copy is required */ 346685535b8eSBarry Smith if (roworiented) { 346785535b8eSBarry Smith value = v + i * (stepval + bs) * bs + j * bs; 346885535b8eSBarry Smith } else { 346985535b8eSBarry Smith value = v + j * (stepval + bs) * bs + i * bs; 347085535b8eSBarry Smith } 347185535b8eSBarry Smith for (ii = 0; ii < bs; ii++, value += stepval) { 3472ad540459SPierre Jolivet for (jj = 0; jj < bs; jj++) *barray++ = *value++; 347385535b8eSBarry Smith } 347485535b8eSBarry Smith barray -= bs2; 347585535b8eSBarry Smith } 347685535b8eSBarry Smith 347785535b8eSBarry Smith if (in[j] >= cstart && in[j] < cend) { 347885535b8eSBarry Smith col = in[j] - cstart; 34799566063dSJacob Faibussowitsch PetscCall(MatSetValuesBlocked_SeqBAIJ_Inlined(baij->A, row, col, barray, addv, im[i], in[j])); 3480f7d195e4SLawrence Mitchell } else if (in[j] < 0) { 3481f7d195e4SLawrence Mitchell continue; 3482f7d195e4SLawrence Mitchell } else { 3483f7d195e4SLawrence Mitchell PetscCheck(in[j] < baij->Nbs, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large, col %" PetscInt_FMT " max %" PetscInt_FMT, in[j], baij->Nbs - 1); 348485535b8eSBarry Smith if (mat->was_assembled) { 348548a46eb9SPierre Jolivet if (!baij->colmap) PetscCall(MatCreateColmap_MPIBAIJ_Private(mat)); 348685535b8eSBarry Smith 348785535b8eSBarry Smith #if defined(PETSC_USE_DEBUG) 348885535b8eSBarry Smith #if defined(PETSC_USE_CTABLE) 34899371c9d4SSatish Balay { 34909371c9d4SSatish Balay PetscInt data; 3491eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIGetWithDefault(baij->colmap, in[j] + 1, 0, &data)); 349208401ef6SPierre Jolivet PetscCheck((data - 1) % bs == 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Incorrect colmap"); 349385535b8eSBarry Smith } 349485535b8eSBarry Smith #else 349508401ef6SPierre Jolivet PetscCheck((baij->colmap[in[j]] - 1) % bs == 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Incorrect colmap"); 349685535b8eSBarry Smith #endif 349785535b8eSBarry Smith #endif 349885535b8eSBarry Smith #if defined(PETSC_USE_CTABLE) 3499eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIGetWithDefault(baij->colmap, in[j] + 1, 0, &col)); 350085535b8eSBarry Smith col = (col - 1) / bs; 350185535b8eSBarry Smith #else 350285535b8eSBarry Smith col = (baij->colmap[in[j]] - 1) / bs; 350385535b8eSBarry Smith #endif 3504f4f49eeaSPierre Jolivet if (col < 0 && !((Mat_SeqBAIJ *)baij->A->data)->nonew) { 35059566063dSJacob Faibussowitsch PetscCall(MatDisAssemble_MPIBAIJ(mat)); 350685535b8eSBarry Smith col = in[j]; 350785535b8eSBarry Smith } 350826fbe8dcSKarl Rupp } else col = in[j]; 35099566063dSJacob Faibussowitsch PetscCall(MatSetValuesBlocked_SeqBAIJ_Inlined(baij->B, row, col, barray, addv, im[i], in[j])); 351085535b8eSBarry Smith } 351185535b8eSBarry Smith } 351285535b8eSBarry Smith } else { 351385535b8eSBarry Smith if (!baij->donotstash) { 351485535b8eSBarry Smith if (roworiented) { 35159566063dSJacob Faibussowitsch PetscCall(MatStashValuesRowBlocked_Private(&mat->bstash, im[i], n, in, v, m, n, i)); 351685535b8eSBarry Smith } else { 35179566063dSJacob Faibussowitsch PetscCall(MatStashValuesColBlocked_Private(&mat->bstash, im[i], n, in, v, m, n, i)); 351885535b8eSBarry Smith } 351985535b8eSBarry Smith } 352085535b8eSBarry Smith } 352185535b8eSBarry Smith } 352285535b8eSBarry Smith 352385535b8eSBarry Smith /* task normally handled by MatSetValuesBlocked() */ 35249566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(MAT_SetValues, mat, 0, 0, 0)); 35253ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 352685535b8eSBarry Smith } 3527dfb205c3SBarry Smith 3528dfb205c3SBarry Smith /*@ 3529d8a51d2aSBarry Smith MatCreateMPIBAIJWithArrays - creates a `MATMPIBAIJ` matrix using arrays that contain in standard block CSR format for the local rows. 3530dfb205c3SBarry Smith 3531d083f849SBarry Smith Collective 3532dfb205c3SBarry Smith 3533dfb205c3SBarry Smith Input Parameters: 3534dfb205c3SBarry Smith + comm - MPI communicator 3535dfb205c3SBarry Smith . bs - the block size, only a block size of 1 is supported 353611a5261eSBarry Smith . m - number of local rows (Cannot be `PETSC_DECIDE`) 3537dfb205c3SBarry Smith . n - This value should be the same as the local size used in creating the 3538d8a51d2aSBarry Smith x vector for the matrix-vector product $ y = Ax $. (or `PETSC_DECIDE` to have 3539d8a51d2aSBarry Smith calculated if `N` is given) For square matrices `n` is almost always `m`. 3540d8a51d2aSBarry Smith . M - number of global rows (or `PETSC_DETERMINE` to have calculated if `m` is given) 3541d8a51d2aSBarry Smith . N - number of global columns (or `PETSC_DETERMINE` to have calculated if `n` is given) 3542483a2f95SBarry Smith . i - row indices; that is i[0] = 0, i[row] = i[row-1] + number of block elements in that rowth block row of the matrix 3543dfb205c3SBarry Smith . j - column indices 3544dfb205c3SBarry Smith - a - matrix values 3545dfb205c3SBarry Smith 3546dfb205c3SBarry Smith Output Parameter: 3547dfb205c3SBarry Smith . mat - the matrix 3548dfb205c3SBarry Smith 3549dfb205c3SBarry Smith Level: intermediate 3550dfb205c3SBarry Smith 3551dfb205c3SBarry Smith Notes: 355267be906fSBarry Smith The `i`, `j`, and `a` arrays ARE copied by this routine into the internal format used by PETSc; 3553dfb205c3SBarry Smith thus you CANNOT change the matrix entries by changing the values of a[] after you have 355411a5261eSBarry Smith called this routine. Use `MatCreateMPIAIJWithSplitArrays()` to avoid needing to copy the arrays. 3555dfb205c3SBarry Smith 35563adadaf3SJed Brown The order of the entries in values is the same as the block compressed sparse row storage format; that is, it is 35573adadaf3SJed Brown the same as a three dimensional array in Fortran values(bs,bs,nnz) that contains the first column of the first 35583adadaf3SJed Brown block, followed by the second column of the first block etc etc. That is, the blocks are contiguous in memory 35593adadaf3SJed Brown with column-major ordering within blocks. 35603adadaf3SJed Brown 3561d8a51d2aSBarry Smith The `i` and `j` indices are 0 based, and `i` indices are indices corresponding to the local `j` array. 3562dfb205c3SBarry Smith 356367be906fSBarry Smith .seealso: `Mat`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`, 35647d2c085eSPierre Jolivet `MATMPIAIJ`, `MatCreateAIJ()`, `MatCreateMPIAIJWithSplitArrays()` 3565dfb205c3SBarry Smith @*/ 3566d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIBAIJWithArrays(MPI_Comm comm, PetscInt bs, PetscInt m, PetscInt n, PetscInt M, PetscInt N, const PetscInt i[], const PetscInt j[], const PetscScalar a[], Mat *mat) 3567d71ae5a4SJacob Faibussowitsch { 3568dfb205c3SBarry Smith PetscFunctionBegin; 35695f80ce2aSJacob Faibussowitsch PetscCheck(!i[0], PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "i (row indices) must start with 0"); 35705f80ce2aSJacob Faibussowitsch PetscCheck(m >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "local number of rows (m) cannot be PETSC_DECIDE, or negative"); 35719566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, mat)); 35729566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*mat, m, n, M, N)); 35739566063dSJacob Faibussowitsch PetscCall(MatSetType(*mat, MATMPIBAIJ)); 35749566063dSJacob Faibussowitsch PetscCall(MatSetBlockSize(*mat, bs)); 35759566063dSJacob Faibussowitsch PetscCall(MatSetUp(*mat)); 35769566063dSJacob Faibussowitsch PetscCall(MatSetOption(*mat, MAT_ROW_ORIENTED, PETSC_FALSE)); 35779566063dSJacob Faibussowitsch PetscCall(MatMPIBAIJSetPreallocationCSR(*mat, bs, i, j, a)); 35789566063dSJacob Faibussowitsch PetscCall(MatSetOption(*mat, MAT_ROW_ORIENTED, PETSC_TRUE)); 35793ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3580dfb205c3SBarry Smith } 3581e561ad89SHong Zhang 3582d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIMatConcatenateSeqMat_MPIBAIJ(MPI_Comm comm, Mat inmat, PetscInt n, MatReuse scall, Mat *outmat) 3583d71ae5a4SJacob Faibussowitsch { 3584bd153df0SHong Zhang PetscInt m, N, i, rstart, nnz, Ii, bs, cbs; 3585bd153df0SHong Zhang PetscInt *indx; 3586bd153df0SHong Zhang PetscScalar *values; 3587e561ad89SHong Zhang 3588e561ad89SHong Zhang PetscFunctionBegin; 35899566063dSJacob Faibussowitsch PetscCall(MatGetSize(inmat, &m, &N)); 3590bd153df0SHong Zhang if (scall == MAT_INITIAL_MATRIX) { /* symbolic phase */ 3591bd153df0SHong Zhang Mat_SeqBAIJ *a = (Mat_SeqBAIJ *)inmat->data; 35922c6ba4edSHong Zhang PetscInt *dnz, *onz, mbs, Nbs, nbs; 3593bd153df0SHong Zhang PetscInt *bindx, rmax = a->rmax, j; 359477f764caSHong Zhang PetscMPIInt rank, size; 3595e561ad89SHong Zhang 35969566063dSJacob Faibussowitsch PetscCall(MatGetBlockSizes(inmat, &bs, &cbs)); 35979371c9d4SSatish Balay mbs = m / bs; 35989371c9d4SSatish Balay Nbs = N / cbs; 359948a46eb9SPierre Jolivet if (n == PETSC_DECIDE) PetscCall(PetscSplitOwnershipBlock(comm, cbs, &n, &N)); 3600da91a574SPierre Jolivet nbs = n / cbs; 3601e561ad89SHong Zhang 36029566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(rmax, &bindx)); 3603d0609cedSBarry Smith MatPreallocateBegin(comm, mbs, nbs, dnz, onz); /* inline function, output __end and __rstart are used below */ 360477f764caSHong Zhang 36059566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 36069566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &size)); 360777f764caSHong Zhang if (rank == size - 1) { 360877f764caSHong Zhang /* Check sum(nbs) = Nbs */ 36095f80ce2aSJacob Faibussowitsch PetscCheck(__end == Nbs, PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "Sum of local block columns %" PetscInt_FMT " != global block columns %" PetscInt_FMT, __end, Nbs); 361077f764caSHong Zhang } 361177f764caSHong Zhang 3612d0609cedSBarry Smith rstart = __rstart; /* block rstart of *outmat; see inline function MatPreallocateBegin */ 3613bd153df0SHong Zhang for (i = 0; i < mbs; i++) { 36149566063dSJacob Faibussowitsch PetscCall(MatGetRow_SeqBAIJ(inmat, i * bs, &nnz, &indx, NULL)); /* non-blocked nnz and indx */ 3615647a6520SHong Zhang nnz = nnz / bs; 3616647a6520SHong Zhang for (j = 0; j < nnz; j++) bindx[j] = indx[j * bs] / bs; 36179566063dSJacob Faibussowitsch PetscCall(MatPreallocateSet(i + rstart, nnz, bindx, dnz, onz)); 36189566063dSJacob Faibussowitsch PetscCall(MatRestoreRow_SeqBAIJ(inmat, i * bs, &nnz, &indx, NULL)); 3619e561ad89SHong Zhang } 36209566063dSJacob Faibussowitsch PetscCall(PetscFree(bindx)); 3621e561ad89SHong Zhang 36229566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, outmat)); 36239566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*outmat, m, n, PETSC_DETERMINE, PETSC_DETERMINE)); 36249566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizes(*outmat, bs, cbs)); 36259566063dSJacob Faibussowitsch PetscCall(MatSetType(*outmat, MATBAIJ)); 36269566063dSJacob Faibussowitsch PetscCall(MatSeqBAIJSetPreallocation(*outmat, bs, 0, dnz)); 36279566063dSJacob Faibussowitsch PetscCall(MatMPIBAIJSetPreallocation(*outmat, bs, 0, dnz, 0, onz)); 3628d0609cedSBarry Smith MatPreallocateEnd(dnz, onz); 36299566063dSJacob Faibussowitsch PetscCall(MatSetOption(*outmat, MAT_NO_OFF_PROC_ENTRIES, PETSC_TRUE)); 3630e561ad89SHong Zhang } 3631e561ad89SHong Zhang 3632bd153df0SHong Zhang /* numeric phase */ 36339566063dSJacob Faibussowitsch PetscCall(MatGetBlockSizes(inmat, &bs, &cbs)); 36349566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(*outmat, &rstart, NULL)); 3635e561ad89SHong Zhang 3636e561ad89SHong Zhang for (i = 0; i < m; i++) { 36379566063dSJacob Faibussowitsch PetscCall(MatGetRow_SeqBAIJ(inmat, i, &nnz, &indx, &values)); 3638e561ad89SHong Zhang Ii = i + rstart; 36399566063dSJacob Faibussowitsch PetscCall(MatSetValues(*outmat, 1, &Ii, nnz, indx, values, INSERT_VALUES)); 36409566063dSJacob Faibussowitsch PetscCall(MatRestoreRow_SeqBAIJ(inmat, i, &nnz, &indx, &values)); 3641e561ad89SHong Zhang } 36429566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(*outmat, MAT_FINAL_ASSEMBLY)); 36439566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(*outmat, MAT_FINAL_ASSEMBLY)); 36443ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3645e561ad89SHong Zhang } 3646