1c6db04a5SJed Brown #include <../src/mat/impls/baij/mpi/mpibaij.h> /*I "petscmat.h" I*/ 2c5d9258eSSatish Balay 3b51a4376SLisandro Dalcin #include <petsc/private/hashseti.h> 4c6db04a5SJed Brown #include <petscblaslapack.h> 565a92638SMatthew G. Knepley #include <petscsf.h> 679bdfe76SSatish Balay 766976f2fSJacob Faibussowitsch static PetscErrorCode MatDestroy_MPIBAIJ(Mat mat) 826cec326SBarry Smith { 926cec326SBarry Smith Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 1026cec326SBarry Smith 1126cec326SBarry Smith PetscFunctionBegin; 1226cec326SBarry Smith PetscCall(PetscLogObjectState((PetscObject)mat, "Rows=%" PetscInt_FMT ",Cols=%" PetscInt_FMT, mat->rmap->N, mat->cmap->N)); 1326cec326SBarry Smith PetscCall(MatStashDestroy_Private(&mat->stash)); 1426cec326SBarry Smith PetscCall(MatStashDestroy_Private(&mat->bstash)); 1526cec326SBarry Smith PetscCall(MatDestroy(&baij->A)); 1626cec326SBarry Smith PetscCall(MatDestroy(&baij->B)); 1726cec326SBarry Smith #if defined(PETSC_USE_CTABLE) 1826cec326SBarry Smith PetscCall(PetscHMapIDestroy(&baij->colmap)); 1926cec326SBarry Smith #else 2026cec326SBarry Smith PetscCall(PetscFree(baij->colmap)); 2126cec326SBarry Smith #endif 2226cec326SBarry Smith PetscCall(PetscFree(baij->garray)); 2326cec326SBarry Smith PetscCall(VecDestroy(&baij->lvec)); 2426cec326SBarry Smith PetscCall(VecScatterDestroy(&baij->Mvctx)); 2526cec326SBarry Smith PetscCall(PetscFree2(baij->rowvalues, baij->rowindices)); 2626cec326SBarry Smith PetscCall(PetscFree(baij->barray)); 2726cec326SBarry Smith PetscCall(PetscFree2(baij->hd, baij->ht)); 2826cec326SBarry Smith PetscCall(PetscFree(baij->rangebs)); 2926cec326SBarry Smith PetscCall(PetscFree(mat->data)); 3026cec326SBarry Smith 3126cec326SBarry Smith PetscCall(PetscObjectChangeTypeName((PetscObject)mat, NULL)); 3226cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatStoreValues_C", NULL)); 3326cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatRetrieveValues_C", NULL)); 3426cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMPIBAIJSetPreallocation_C", NULL)); 3526cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMPIBAIJSetPreallocationCSR_C", NULL)); 3626cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDiagonalScaleLocal_C", NULL)); 3726cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatSetHashTableFactor_C", NULL)); 3826cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpibaij_mpisbaij_C", NULL)); 3926cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpibaij_mpiadj_C", NULL)); 4026cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpibaij_mpiaij_C", NULL)); 4126cec326SBarry Smith #if defined(PETSC_HAVE_HYPRE) 4226cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpibaij_hypre_C", NULL)); 4326cec326SBarry Smith #endif 4426cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpibaij_is_C", NULL)); 4526cec326SBarry Smith PetscFunctionReturn(PETSC_SUCCESS); 4626cec326SBarry Smith } 4726cec326SBarry Smith 4826cec326SBarry Smith /* defines MatSetValues_MPI_Hash(), MatAssemblyBegin_MPI_Hash(), and MatAssemblyEnd_MPI_Hash() */ 4926cec326SBarry Smith #define TYPE BAIJ 5026cec326SBarry Smith #include "../src/mat/impls/aij/mpi/mpihashmat.h" 5126cec326SBarry Smith #undef TYPE 5226cec326SBarry Smith 537ea3e4caSstefano_zampini #if defined(PETSC_HAVE_HYPRE) 547ea3e4caSstefano_zampini PETSC_INTERN PetscErrorCode MatConvert_AIJ_HYPRE(Mat, MatType, MatReuse, Mat *); 557ea3e4caSstefano_zampini #endif 567ea3e4caSstefano_zampini 5766976f2fSJacob Faibussowitsch static PetscErrorCode MatGetRowMaxAbs_MPIBAIJ(Mat A, Vec v, PetscInt idx[]) 58d71ae5a4SJacob Faibussowitsch { 597843d17aSBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 604e879edeSHong Zhang PetscInt i, *idxb = NULL, m = A->rmap->n, bs = A->cmap->bs; 61db161fc6SPierre Jolivet PetscScalar *vv; 624e879edeSHong Zhang Vec vB, vA; 63db161fc6SPierre Jolivet const PetscScalar *va, *vb; 647843d17aSBarry Smith 657843d17aSBarry Smith PetscFunctionBegin; 66c7b600bfSPierre Jolivet PetscCall(MatCreateVecs(a->A, NULL, &vA)); 679566063dSJacob Faibussowitsch PetscCall(MatGetRowMaxAbs(a->A, vA, idx)); 684e879edeSHong Zhang 69db161fc6SPierre Jolivet PetscCall(VecGetArrayRead(vA, &va)); 70985db425SBarry Smith if (idx) { 714e879edeSHong Zhang for (i = 0; i < m; i++) { 7226fbe8dcSKarl Rupp if (PetscAbsScalar(va[i])) idx[i] += A->cmap->rstart; 7326fbe8dcSKarl Rupp } 74985db425SBarry Smith } 757843d17aSBarry Smith 76c7b600bfSPierre Jolivet PetscCall(MatCreateVecs(a->B, NULL, &vB)); 779566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m, &idxb)); 789566063dSJacob Faibussowitsch PetscCall(MatGetRowMaxAbs(a->B, vB, idxb)); 797843d17aSBarry Smith 809566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(v, &vv)); 819566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(vB, &vb)); 824e879edeSHong Zhang for (i = 0; i < m; i++) { 8326fbe8dcSKarl Rupp if (PetscAbsScalar(va[i]) < PetscAbsScalar(vb[i])) { 844e879edeSHong Zhang vv[i] = vb[i]; 854e879edeSHong Zhang if (idx) idx[i] = bs * a->garray[idxb[i] / bs] + (idxb[i] % bs); 864e879edeSHong Zhang } else { 874e879edeSHong Zhang vv[i] = va[i]; 889371c9d4SSatish Balay if (idx && PetscAbsScalar(va[i]) == PetscAbsScalar(vb[i]) && idxb[i] != -1 && idx[i] > bs * a->garray[idxb[i] / bs] + (idxb[i] % bs)) idx[i] = bs * a->garray[idxb[i] / bs] + (idxb[i] % bs); 8926fbe8dcSKarl Rupp } 907843d17aSBarry Smith } 91db161fc6SPierre Jolivet PetscCall(VecRestoreArrayWrite(v, &vv)); 92db161fc6SPierre Jolivet PetscCall(VecRestoreArrayRead(vA, &va)); 939566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(vB, &vb)); 949566063dSJacob Faibussowitsch PetscCall(PetscFree(idxb)); 959566063dSJacob Faibussowitsch PetscCall(VecDestroy(&vA)); 969566063dSJacob Faibussowitsch PetscCall(VecDestroy(&vB)); 973ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 987843d17aSBarry Smith } 997843d17aSBarry Smith 100c7b600bfSPierre Jolivet static PetscErrorCode MatGetRowSumAbs_MPIBAIJ(Mat A, Vec v) 101c7b600bfSPierre Jolivet { 102c7b600bfSPierre Jolivet Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 103c7b600bfSPierre Jolivet Vec vB, vA; 104c7b600bfSPierre Jolivet 105c7b600bfSPierre Jolivet PetscFunctionBegin; 106c7b600bfSPierre Jolivet PetscCall(MatCreateVecs(a->A, NULL, &vA)); 107c7b600bfSPierre Jolivet PetscCall(MatGetRowSumAbs(a->A, vA)); 108c7b600bfSPierre Jolivet PetscCall(MatCreateVecs(a->B, NULL, &vB)); 109c7b600bfSPierre Jolivet PetscCall(MatGetRowSumAbs(a->B, vB)); 110c7b600bfSPierre Jolivet PetscCall(VecAXPY(vA, 1.0, vB)); 111c7b600bfSPierre Jolivet PetscCall(VecDestroy(&vB)); 112c7b600bfSPierre Jolivet PetscCall(VecCopy(vA, v)); 113c7b600bfSPierre Jolivet PetscCall(VecDestroy(&vA)); 114c7b600bfSPierre Jolivet PetscFunctionReturn(PETSC_SUCCESS); 115c7b600bfSPierre Jolivet } 116c7b600bfSPierre Jolivet 11766976f2fSJacob Faibussowitsch static PetscErrorCode MatStoreValues_MPIBAIJ(Mat mat) 118d71ae5a4SJacob Faibussowitsch { 1197fc3c18eSBarry Smith Mat_MPIBAIJ *aij = (Mat_MPIBAIJ *)mat->data; 1207fc3c18eSBarry Smith 1217fc3c18eSBarry Smith PetscFunctionBegin; 1229566063dSJacob Faibussowitsch PetscCall(MatStoreValues(aij->A)); 1239566063dSJacob Faibussowitsch PetscCall(MatStoreValues(aij->B)); 1243ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1257fc3c18eSBarry Smith } 1267fc3c18eSBarry Smith 12766976f2fSJacob Faibussowitsch static PetscErrorCode MatRetrieveValues_MPIBAIJ(Mat mat) 128d71ae5a4SJacob Faibussowitsch { 1297fc3c18eSBarry Smith Mat_MPIBAIJ *aij = (Mat_MPIBAIJ *)mat->data; 1307fc3c18eSBarry Smith 1317fc3c18eSBarry Smith PetscFunctionBegin; 1329566063dSJacob Faibussowitsch PetscCall(MatRetrieveValues(aij->A)); 1339566063dSJacob Faibussowitsch PetscCall(MatRetrieveValues(aij->B)); 1343ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1357fc3c18eSBarry Smith } 1367fc3c18eSBarry Smith 137537820f0SBarry Smith /* 138537820f0SBarry Smith Local utility routine that creates a mapping from the global column 13957b952d6SSatish Balay number to the local number in the off-diagonal part of the local 140e06f6af7SJed Brown storage of the matrix. This is done in a non scalable way since the 14157b952d6SSatish Balay length of colmap equals the global matrix length. 14257b952d6SSatish Balay */ 143d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateColmap_MPIBAIJ_Private(Mat mat) 144d71ae5a4SJacob Faibussowitsch { 14557b952d6SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 14657b952d6SSatish Balay Mat_SeqBAIJ *B = (Mat_SeqBAIJ *)baij->B->data; 147d0f46423SBarry Smith PetscInt nbs = B->nbs, i, bs = mat->rmap->bs; 14857b952d6SSatish Balay 149d64ed03dSBarry Smith PetscFunctionBegin; 150aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 151eec179cfSJacob Faibussowitsch PetscCall(PetscHMapICreateWithSize(baij->nbs, &baij->colmap)); 152c76ffc5fSJacob Faibussowitsch for (i = 0; i < nbs; i++) PetscCall(PetscHMapISet(baij->colmap, baij->garray[i] + 1, i * bs + 1)); 15348e59246SSatish Balay #else 1549566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(baij->Nbs + 1, &baij->colmap)); 155928fc39bSSatish Balay for (i = 0; i < nbs; i++) baij->colmap[baij->garray[i]] = i * bs + 1; 15648e59246SSatish Balay #endif 1573ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 15857b952d6SSatish Balay } 15957b952d6SSatish Balay 160d40312a9SBarry Smith #define MatSetValues_SeqBAIJ_A_Private(row, col, value, addv, orow, ocol) \ 161a8f51744SPierre Jolivet do { \ 16280c1aa95SSatish Balay brow = row / bs; \ 1638e3a54c0SPierre Jolivet rp = PetscSafePointerPlusOffset(aj, ai[brow]); \ 1648e3a54c0SPierre Jolivet ap = PetscSafePointerPlusOffset(aa, bs2 * ai[brow]); \ 1659371c9d4SSatish Balay rmax = aimax[brow]; \ 1669371c9d4SSatish Balay nrow = ailen[brow]; \ 16780c1aa95SSatish Balay bcol = col / bs; \ 1689371c9d4SSatish Balay ridx = row % bs; \ 1699371c9d4SSatish Balay cidx = col % bs; \ 1709371c9d4SSatish Balay low = 0; \ 1719371c9d4SSatish Balay high = nrow; \ 172ab26458aSBarry Smith while (high - low > 3) { \ 173ab26458aSBarry Smith t = (low + high) / 2; \ 174ab26458aSBarry Smith if (rp[t] > bcol) high = t; \ 175ab26458aSBarry Smith else low = t; \ 176ab26458aSBarry Smith } \ 177ab26458aSBarry Smith for (_i = low; _i < high; _i++) { \ 17880c1aa95SSatish Balay if (rp[_i] > bcol) break; \ 17980c1aa95SSatish Balay if (rp[_i] == bcol) { \ 18080c1aa95SSatish Balay bap = ap + bs2 * _i + bs * cidx + ridx; \ 181eada6651SSatish Balay if (addv == ADD_VALUES) *bap += value; \ 182eada6651SSatish Balay else *bap = value; \ 183ac7a638eSSatish Balay goto a_noinsert; \ 18480c1aa95SSatish Balay } \ 18580c1aa95SSatish Balay } \ 18689280ab3SLois Curfman McInnes if (a->nonew == 1) goto a_noinsert; \ 1875f80ce2aSJacob Faibussowitsch PetscCheck(a->nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", orow, ocol); \ 188fef13f97SBarry Smith MatSeqXAIJReallocateAIJ(A, a->mbs, bs2, nrow, brow, bcol, rmax, aa, ai, aj, rp, ap, aimax, a->nonew, MatScalar); \ 18980c1aa95SSatish Balay N = nrow++ - 1; \ 19080c1aa95SSatish Balay /* shift up all the later entries in this row */ \ 1919566063dSJacob Faibussowitsch PetscCall(PetscArraymove(rp + _i + 1, rp + _i, N - _i + 1)); \ 1929566063dSJacob Faibussowitsch PetscCall(PetscArraymove(ap + bs2 * (_i + 1), ap + bs2 * _i, bs2 * (N - _i + 1))); \ 1939566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(ap + bs2 * _i, bs2)); \ 19480c1aa95SSatish Balay rp[_i] = bcol; \ 19580c1aa95SSatish Balay ap[bs2 * _i + bs * cidx + ridx] = value; \ 196ac7a638eSSatish Balay a_noinsert:; \ 19780c1aa95SSatish Balay ailen[brow] = nrow; \ 198a8f51744SPierre Jolivet } while (0) 19957b952d6SSatish Balay 200d40312a9SBarry Smith #define MatSetValues_SeqBAIJ_B_Private(row, col, value, addv, orow, ocol) \ 201a8f51744SPierre Jolivet do { \ 202ac7a638eSSatish Balay brow = row / bs; \ 2038e3a54c0SPierre Jolivet rp = PetscSafePointerPlusOffset(bj, bi[brow]); \ 2048e3a54c0SPierre Jolivet ap = PetscSafePointerPlusOffset(ba, bs2 * bi[brow]); \ 2059371c9d4SSatish Balay rmax = bimax[brow]; \ 2069371c9d4SSatish Balay nrow = bilen[brow]; \ 207ac7a638eSSatish Balay bcol = col / bs; \ 2089371c9d4SSatish Balay ridx = row % bs; \ 2099371c9d4SSatish Balay cidx = col % bs; \ 2109371c9d4SSatish Balay low = 0; \ 2119371c9d4SSatish Balay high = nrow; \ 212ac7a638eSSatish Balay while (high - low > 3) { \ 213ac7a638eSSatish Balay t = (low + high) / 2; \ 214ac7a638eSSatish Balay if (rp[t] > bcol) high = t; \ 215ac7a638eSSatish Balay else low = t; \ 216ac7a638eSSatish Balay } \ 217ac7a638eSSatish Balay for (_i = low; _i < high; _i++) { \ 218ac7a638eSSatish Balay if (rp[_i] > bcol) break; \ 219ac7a638eSSatish Balay if (rp[_i] == bcol) { \ 220ac7a638eSSatish Balay bap = ap + bs2 * _i + bs * cidx + ridx; \ 221ac7a638eSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 222ac7a638eSSatish Balay else *bap = value; \ 223ac7a638eSSatish Balay goto b_noinsert; \ 224ac7a638eSSatish Balay } \ 225ac7a638eSSatish Balay } \ 22689280ab3SLois Curfman McInnes if (b->nonew == 1) goto b_noinsert; \ 2275f80ce2aSJacob Faibussowitsch PetscCheck(b->nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", orow, ocol); \ 228fef13f97SBarry Smith MatSeqXAIJReallocateAIJ(B, b->mbs, bs2, nrow, brow, bcol, rmax, ba, bi, bj, rp, ap, bimax, b->nonew, MatScalar); \ 229ac7a638eSSatish Balay N = nrow++ - 1; \ 230ac7a638eSSatish Balay /* shift up all the later entries in this row */ \ 2319566063dSJacob Faibussowitsch PetscCall(PetscArraymove(rp + _i + 1, rp + _i, N - _i + 1)); \ 2329566063dSJacob Faibussowitsch PetscCall(PetscArraymove(ap + bs2 * (_i + 1), ap + bs2 * _i, bs2 * (N - _i + 1))); \ 2339566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(ap + bs2 * _i, bs2)); \ 234ac7a638eSSatish Balay rp[_i] = bcol; \ 235ac7a638eSSatish Balay ap[bs2 * _i + bs * cidx + ridx] = value; \ 236ac7a638eSSatish Balay b_noinsert:; \ 237ac7a638eSSatish Balay bilen[brow] = nrow; \ 238a8f51744SPierre Jolivet } while (0) 239ac7a638eSSatish Balay 240d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetValues_MPIBAIJ(Mat mat, PetscInt m, const PetscInt im[], PetscInt n, const PetscInt in[], const PetscScalar v[], InsertMode addv) 241d71ae5a4SJacob Faibussowitsch { 24257b952d6SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 24393fea6afSBarry Smith MatScalar value; 244ace3abfcSBarry Smith PetscBool roworiented = baij->roworiented; 245b24ad042SBarry Smith PetscInt i, j, row, col; 246d0f46423SBarry Smith PetscInt rstart_orig = mat->rmap->rstart; 247d0f46423SBarry Smith PetscInt rend_orig = mat->rmap->rend, cstart_orig = mat->cmap->rstart; 248d0f46423SBarry Smith PetscInt cend_orig = mat->cmap->rend, bs = mat->rmap->bs; 24957b952d6SSatish Balay 250eada6651SSatish Balay /* Some Variables required in the macro */ 25180c1aa95SSatish Balay Mat A = baij->A; 25257508eceSPierre Jolivet Mat_SeqBAIJ *a = (Mat_SeqBAIJ *)A->data; 253b24ad042SBarry Smith PetscInt *aimax = a->imax, *ai = a->i, *ailen = a->ilen, *aj = a->j; 2543eda8832SBarry Smith MatScalar *aa = a->a; 255ac7a638eSSatish Balay 256ac7a638eSSatish Balay Mat B = baij->B; 25757508eceSPierre Jolivet Mat_SeqBAIJ *b = (Mat_SeqBAIJ *)B->data; 258b24ad042SBarry Smith PetscInt *bimax = b->imax, *bi = b->i, *bilen = b->ilen, *bj = b->j; 2593eda8832SBarry Smith MatScalar *ba = b->a; 260ac7a638eSSatish Balay 261b24ad042SBarry Smith PetscInt *rp, ii, nrow, _i, rmax, N, brow, bcol; 262b24ad042SBarry Smith PetscInt low, high, t, ridx, cidx, bs2 = a->bs2; 2633eda8832SBarry Smith MatScalar *ap, *bap; 26480c1aa95SSatish Balay 265d64ed03dSBarry Smith PetscFunctionBegin; 26657b952d6SSatish Balay for (i = 0; i < m; i++) { 2675ef9f2a5SBarry Smith if (im[i] < 0) continue; 2685f80ce2aSJacob Faibussowitsch PetscCheck(im[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, im[i], mat->rmap->N - 1); 26957b952d6SSatish Balay if (im[i] >= rstart_orig && im[i] < rend_orig) { 27057b952d6SSatish Balay row = im[i] - rstart_orig; 27157b952d6SSatish Balay for (j = 0; j < n; j++) { 27257b952d6SSatish Balay if (in[j] >= cstart_orig && in[j] < cend_orig) { 27357b952d6SSatish Balay col = in[j] - cstart_orig; 274db4deed7SKarl Rupp if (roworiented) value = v[i * n + j]; 275db4deed7SKarl Rupp else value = v[i + j * m]; 276d40312a9SBarry Smith MatSetValues_SeqBAIJ_A_Private(row, col, value, addv, im[i], in[j]); 277f7d195e4SLawrence Mitchell } else if (in[j] < 0) { 278f7d195e4SLawrence Mitchell continue; 279f7d195e4SLawrence Mitchell } else { 280f7d195e4SLawrence Mitchell PetscCheck(in[j] < mat->cmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, in[j], mat->cmap->N - 1); 28157b952d6SSatish Balay if (mat->was_assembled) { 28248a46eb9SPierre Jolivet if (!baij->colmap) PetscCall(MatCreateColmap_MPIBAIJ_Private(mat)); 283aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 284eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIGetWithDefault(baij->colmap, in[j] / bs + 1, 0, &col)); 285bba1ac68SSatish Balay col = col - 1; 28648e59246SSatish Balay #else 287bba1ac68SSatish Balay col = baij->colmap[in[j] / bs] - 1; 28848e59246SSatish Balay #endif 289f4f49eeaSPierre Jolivet if (col < 0 && !((Mat_SeqBAIJ *)baij->B->data)->nonew) { 2909566063dSJacob Faibussowitsch PetscCall(MatDisAssemble_MPIBAIJ(mat)); 2918295de27SSatish Balay col = in[j]; 2929bf004c3SSatish Balay /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */ 2939bf004c3SSatish Balay B = baij->B; 29457508eceSPierre Jolivet b = (Mat_SeqBAIJ *)B->data; 2959371c9d4SSatish Balay bimax = b->imax; 2969371c9d4SSatish Balay bi = b->i; 2979371c9d4SSatish Balay bilen = b->ilen; 2989371c9d4SSatish Balay bj = b->j; 2999bf004c3SSatish Balay ba = b->a; 300f7d195e4SLawrence Mitchell } else { 301f7d195e4SLawrence Mitchell PetscCheck(col >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", im[i], in[j]); 302f7d195e4SLawrence Mitchell col += in[j] % bs; 303f7d195e4SLawrence Mitchell } 3048295de27SSatish Balay } else col = in[j]; 305db4deed7SKarl Rupp if (roworiented) value = v[i * n + j]; 306db4deed7SKarl Rupp else value = v[i + j * m]; 307d40312a9SBarry Smith MatSetValues_SeqBAIJ_B_Private(row, col, value, addv, im[i], in[j]); 3089566063dSJacob Faibussowitsch /* PetscCall(MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv)); */ 30957b952d6SSatish Balay } 31057b952d6SSatish Balay } 311d64ed03dSBarry Smith } else { 3125f80ce2aSJacob Faibussowitsch PetscCheck(!mat->nooffprocentries, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Setting off process row %" PetscInt_FMT " even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set", im[i]); 31390f02eecSBarry Smith if (!baij->donotstash) { 3145080c13bSMatthew G Knepley mat->assembled = PETSC_FALSE; 315ff2fd236SBarry Smith if (roworiented) { 3169566063dSJacob Faibussowitsch PetscCall(MatStashValuesRow_Private(&mat->stash, im[i], n, in, v + i * n, PETSC_FALSE)); 317ff2fd236SBarry Smith } else { 3189566063dSJacob Faibussowitsch PetscCall(MatStashValuesCol_Private(&mat->stash, im[i], n, in, v + i, m, PETSC_FALSE)); 31957b952d6SSatish Balay } 32057b952d6SSatish Balay } 32157b952d6SSatish Balay } 32290f02eecSBarry Smith } 3233ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 32457b952d6SSatish Balay } 32557b952d6SSatish Balay 326d71ae5a4SJacob Faibussowitsch static inline PetscErrorCode MatSetValuesBlocked_SeqBAIJ_Inlined(Mat A, PetscInt row, PetscInt col, const PetscScalar v[], InsertMode is, PetscInt orow, PetscInt ocol) 327d71ae5a4SJacob Faibussowitsch { 328880c6e6aSBarry Smith Mat_SeqBAIJ *a = (Mat_SeqBAIJ *)A->data; 3298ab52850SBarry Smith PetscInt *rp, low, high, t, ii, jj, nrow, i, rmax, N; 330880c6e6aSBarry Smith PetscInt *imax = a->imax, *ai = a->i, *ailen = a->ilen; 3318ab52850SBarry Smith PetscInt *aj = a->j, nonew = a->nonew, bs2 = a->bs2, bs = A->rmap->bs; 332880c6e6aSBarry Smith PetscBool roworiented = a->roworiented; 333880c6e6aSBarry Smith const PetscScalar *value = v; 334880c6e6aSBarry Smith MatScalar *ap, *aa = a->a, *bap; 335880c6e6aSBarry Smith 336880c6e6aSBarry Smith PetscFunctionBegin; 337880c6e6aSBarry Smith rp = aj + ai[row]; 338880c6e6aSBarry Smith ap = aa + bs2 * ai[row]; 339880c6e6aSBarry Smith rmax = imax[row]; 340880c6e6aSBarry Smith nrow = ailen[row]; 3418ab52850SBarry Smith value = v; 3428ab52850SBarry Smith low = 0; 3438ab52850SBarry Smith high = nrow; 344880c6e6aSBarry Smith while (high - low > 7) { 345880c6e6aSBarry Smith t = (low + high) / 2; 346880c6e6aSBarry Smith if (rp[t] > col) high = t; 347880c6e6aSBarry Smith else low = t; 348880c6e6aSBarry Smith } 349880c6e6aSBarry Smith for (i = low; i < high; i++) { 350880c6e6aSBarry Smith if (rp[i] > col) break; 351880c6e6aSBarry Smith if (rp[i] == col) { 352880c6e6aSBarry Smith bap = ap + bs2 * i; 353880c6e6aSBarry Smith if (roworiented) { 354880c6e6aSBarry Smith if (is == ADD_VALUES) { 3558ab52850SBarry Smith for (ii = 0; ii < bs; ii++) { 356ad540459SPierre Jolivet for (jj = ii; jj < bs2; jj += bs) bap[jj] += *value++; 357880c6e6aSBarry Smith } 358880c6e6aSBarry Smith } else { 3598ab52850SBarry Smith for (ii = 0; ii < bs; ii++) { 360ad540459SPierre Jolivet for (jj = ii; jj < bs2; jj += bs) bap[jj] = *value++; 361880c6e6aSBarry Smith } 362880c6e6aSBarry Smith } 363880c6e6aSBarry Smith } else { 364880c6e6aSBarry Smith if (is == ADD_VALUES) { 3658ab52850SBarry Smith for (ii = 0; ii < bs; ii++, value += bs) { 366ad540459SPierre Jolivet for (jj = 0; jj < bs; jj++) bap[jj] += value[jj]; 367880c6e6aSBarry Smith bap += bs; 368880c6e6aSBarry Smith } 369880c6e6aSBarry Smith } else { 3708ab52850SBarry Smith for (ii = 0; ii < bs; ii++, value += bs) { 371ad540459SPierre Jolivet for (jj = 0; jj < bs; jj++) bap[jj] = value[jj]; 372880c6e6aSBarry Smith bap += bs; 373880c6e6aSBarry Smith } 374880c6e6aSBarry Smith } 375880c6e6aSBarry Smith } 376880c6e6aSBarry Smith goto noinsert2; 377880c6e6aSBarry Smith } 378880c6e6aSBarry Smith } 379880c6e6aSBarry Smith if (nonew == 1) goto noinsert2; 3805f80ce2aSJacob Faibussowitsch PetscCheck(nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new global block indexed nonzero block (%" PetscInt_FMT ", %" PetscInt_FMT ") in the matrix", orow, ocol); 381880c6e6aSBarry Smith MatSeqXAIJReallocateAIJ(A, a->mbs, bs2, nrow, row, col, rmax, aa, ai, aj, rp, ap, imax, nonew, MatScalar); 3829371c9d4SSatish Balay N = nrow++ - 1; 3839371c9d4SSatish Balay high++; 384880c6e6aSBarry Smith /* shift up all the later entries in this row */ 3859566063dSJacob Faibussowitsch PetscCall(PetscArraymove(rp + i + 1, rp + i, N - i + 1)); 3869566063dSJacob Faibussowitsch PetscCall(PetscArraymove(ap + bs2 * (i + 1), ap + bs2 * i, bs2 * (N - i + 1))); 387880c6e6aSBarry Smith rp[i] = col; 388880c6e6aSBarry Smith bap = ap + bs2 * i; 389880c6e6aSBarry Smith if (roworiented) { 3908ab52850SBarry Smith for (ii = 0; ii < bs; ii++) { 391ad540459SPierre Jolivet for (jj = ii; jj < bs2; jj += bs) bap[jj] = *value++; 392880c6e6aSBarry Smith } 393880c6e6aSBarry Smith } else { 3948ab52850SBarry Smith for (ii = 0; ii < bs; ii++) { 395ad540459SPierre Jolivet for (jj = 0; jj < bs; jj++) *bap++ = *value++; 396880c6e6aSBarry Smith } 397880c6e6aSBarry Smith } 398880c6e6aSBarry Smith noinsert2:; 399880c6e6aSBarry Smith ailen[row] = nrow; 4003ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 401880c6e6aSBarry Smith } 402880c6e6aSBarry Smith 4038ab52850SBarry Smith /* 4048ab52850SBarry Smith This routine should be optimized so that the block copy at ** Here a copy is required ** below is not needed 4058ab52850SBarry Smith by passing additional stride information into the MatSetValuesBlocked_SeqBAIJ_Inlined() routine 4068ab52850SBarry Smith */ 40766976f2fSJacob Faibussowitsch static PetscErrorCode MatSetValuesBlocked_MPIBAIJ(Mat mat, PetscInt m, const PetscInt im[], PetscInt n, const PetscInt in[], const PetscScalar v[], InsertMode addv) 408d71ae5a4SJacob Faibussowitsch { 409ab26458aSBarry Smith Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 410dd6ea824SBarry Smith const PetscScalar *value; 411f15d580aSBarry Smith MatScalar *barray = baij->barray; 412ace3abfcSBarry Smith PetscBool roworiented = baij->roworiented; 413899cda47SBarry Smith PetscInt i, j, ii, jj, row, col, rstart = baij->rstartbs; 414899cda47SBarry Smith PetscInt rend = baij->rendbs, cstart = baij->cstartbs, stepval; 415d0f46423SBarry Smith PetscInt cend = baij->cendbs, bs = mat->rmap->bs, bs2 = baij->bs2; 416ab26458aSBarry Smith 417b16ae2b1SBarry Smith PetscFunctionBegin; 41830793edcSSatish Balay if (!barray) { 4199566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(bs2, &barray)); 42082502324SSatish Balay baij->barray = barray; 42130793edcSSatish Balay } 42230793edcSSatish Balay 42326fbe8dcSKarl Rupp if (roworiented) stepval = (n - 1) * bs; 42426fbe8dcSKarl Rupp else stepval = (m - 1) * bs; 42526fbe8dcSKarl Rupp 426ab26458aSBarry Smith for (i = 0; i < m; i++) { 4275ef9f2a5SBarry Smith if (im[i] < 0) continue; 4286bdcaf15SBarry Smith PetscCheck(im[i] < baij->Mbs, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Block indexed row too large %" PetscInt_FMT " max %" PetscInt_FMT, im[i], baij->Mbs - 1); 429ab26458aSBarry Smith if (im[i] >= rstart && im[i] < rend) { 430ab26458aSBarry Smith row = im[i] - rstart; 431ab26458aSBarry Smith for (j = 0; j < n; j++) { 43215b57d14SSatish Balay /* If NumCol = 1 then a copy is not required */ 43315b57d14SSatish Balay if ((roworiented) && (n == 1)) { 434f15d580aSBarry Smith barray = (MatScalar *)v + i * bs2; 43515b57d14SSatish Balay } else if ((!roworiented) && (m == 1)) { 436f15d580aSBarry Smith barray = (MatScalar *)v + j * bs2; 43715b57d14SSatish Balay } else { /* Here a copy is required */ 438ab26458aSBarry Smith if (roworiented) { 43953ef36baSBarry Smith value = v + (i * (stepval + bs) + j) * bs; 440ab26458aSBarry Smith } else { 44153ef36baSBarry Smith value = v + (j * (stepval + bs) + i) * bs; 442abef11f7SSatish Balay } 44353ef36baSBarry Smith for (ii = 0; ii < bs; ii++, value += bs + stepval) { 44426fbe8dcSKarl Rupp for (jj = 0; jj < bs; jj++) barray[jj] = value[jj]; 44553ef36baSBarry Smith barray += bs; 44647513183SBarry Smith } 44730793edcSSatish Balay barray -= bs2; 44815b57d14SSatish Balay } 449abef11f7SSatish Balay 450abef11f7SSatish Balay if (in[j] >= cstart && in[j] < cend) { 451abef11f7SSatish Balay col = in[j] - cstart; 4529566063dSJacob Faibussowitsch PetscCall(MatSetValuesBlocked_SeqBAIJ_Inlined(baij->A, row, col, barray, addv, im[i], in[j])); 453f7d195e4SLawrence Mitchell } else if (in[j] < 0) { 454f7d195e4SLawrence Mitchell continue; 455f7d195e4SLawrence Mitchell } else { 456f7d195e4SLawrence Mitchell PetscCheck(in[j] < baij->Nbs, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Block indexed column too large %" PetscInt_FMT " max %" PetscInt_FMT, in[j], baij->Nbs - 1); 457ab26458aSBarry Smith if (mat->was_assembled) { 45848a46eb9SPierre Jolivet if (!baij->colmap) PetscCall(MatCreateColmap_MPIBAIJ_Private(mat)); 459a5eb4965SSatish Balay 460aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 461eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIGetWithDefault(baij->colmap, in[j] + 1, 0, &col)); 462b758ae8cSBarry Smith col = col < 1 ? -1 : (col - 1) / bs; 46348e59246SSatish Balay #else 464b758ae8cSBarry Smith col = baij->colmap[in[j]] < 1 ? -1 : (baij->colmap[in[j]] - 1) / bs; 46548e59246SSatish Balay #endif 466f4f49eeaSPierre Jolivet if (col < 0 && !((Mat_SeqBAIJ *)baij->B->data)->nonew) { 4679566063dSJacob Faibussowitsch PetscCall(MatDisAssemble_MPIBAIJ(mat)); 468ab26458aSBarry Smith col = in[j]; 4695f80ce2aSJacob Faibussowitsch } else PetscCheck(col >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new blocked indexed nonzero block (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", im[i], in[j]); 470db4deed7SKarl Rupp } else col = in[j]; 4719566063dSJacob Faibussowitsch PetscCall(MatSetValuesBlocked_SeqBAIJ_Inlined(baij->B, row, col, barray, addv, im[i], in[j])); 472ab26458aSBarry Smith } 473ab26458aSBarry Smith } 474d64ed03dSBarry Smith } else { 4755f80ce2aSJacob Faibussowitsch PetscCheck(!mat->nooffprocentries, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Setting off process block indexed row %" PetscInt_FMT " even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set", im[i]); 476ab26458aSBarry Smith if (!baij->donotstash) { 477ff2fd236SBarry Smith if (roworiented) { 4789566063dSJacob Faibussowitsch PetscCall(MatStashValuesRowBlocked_Private(&mat->bstash, im[i], n, in, v, m, n, i)); 479ff2fd236SBarry Smith } else { 4809566063dSJacob Faibussowitsch PetscCall(MatStashValuesColBlocked_Private(&mat->bstash, im[i], n, in, v, m, n, i)); 481ff2fd236SBarry Smith } 482abef11f7SSatish Balay } 483ab26458aSBarry Smith } 484ab26458aSBarry Smith } 4853ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 486ab26458aSBarry Smith } 4876fa18ffdSBarry Smith 4880bdbc534SSatish Balay #define HASH_KEY 0.6180339887 489b24ad042SBarry Smith #define HASH(size, key, tmp) (tmp = (key) * HASH_KEY, (PetscInt)((size) * (tmp - (PetscInt)tmp))) 490b24ad042SBarry Smith /* #define HASH(size,key) ((PetscInt)((size)*fmod(((key)*HASH_KEY),1))) */ 491b24ad042SBarry Smith /* #define HASH(size,key,tmp) ((PetscInt)((size)*fmod(((key)*HASH_KEY),1))) */ 49266976f2fSJacob Faibussowitsch static PetscErrorCode MatSetValues_MPIBAIJ_HT(Mat mat, PetscInt m, const PetscInt im[], PetscInt n, const PetscInt in[], const PetscScalar v[], InsertMode addv) 493d71ae5a4SJacob Faibussowitsch { 4940bdbc534SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 495ace3abfcSBarry Smith PetscBool roworiented = baij->roworiented; 496b24ad042SBarry Smith PetscInt i, j, row, col; 497d0f46423SBarry Smith PetscInt rstart_orig = mat->rmap->rstart; 498d0f46423SBarry Smith PetscInt rend_orig = mat->rmap->rend, Nbs = baij->Nbs; 499d0f46423SBarry Smith PetscInt h1, key, size = baij->ht_size, bs = mat->rmap->bs, *HT = baij->ht, idx; 500329f5518SBarry Smith PetscReal tmp; 5013eda8832SBarry Smith MatScalar **HD = baij->hd, value; 502b24ad042SBarry Smith PetscInt total_ct = baij->ht_total_ct, insert_ct = baij->ht_insert_ct; 5030bdbc534SSatish Balay 5040bdbc534SSatish Balay PetscFunctionBegin; 5050bdbc534SSatish Balay for (i = 0; i < m; i++) { 50676bd3646SJed Brown if (PetscDefined(USE_DEBUG)) { 5075f80ce2aSJacob Faibussowitsch PetscCheck(im[i] >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Negative row"); 5085f80ce2aSJacob Faibussowitsch PetscCheck(im[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, im[i], mat->rmap->N - 1); 50976bd3646SJed Brown } 5100bdbc534SSatish Balay row = im[i]; 511c2760754SSatish Balay if (row >= rstart_orig && row < rend_orig) { 5120bdbc534SSatish Balay for (j = 0; j < n; j++) { 5130bdbc534SSatish Balay col = in[j]; 514db4deed7SKarl Rupp if (roworiented) value = v[i * n + j]; 515db4deed7SKarl Rupp else value = v[i + j * m]; 516b24ad042SBarry Smith /* Look up PetscInto the Hash Table */ 517c2760754SSatish Balay key = (row / bs) * Nbs + (col / bs) + 1; 518c2760754SSatish Balay h1 = HASH(size, key, tmp); 5190bdbc534SSatish Balay 520c2760754SSatish Balay idx = h1; 52176bd3646SJed Brown if (PetscDefined(USE_DEBUG)) { 522187ce0cbSSatish Balay insert_ct++; 523187ce0cbSSatish Balay total_ct++; 524187ce0cbSSatish Balay if (HT[idx] != key) { 525fbccb6d4SPierre Jolivet for (idx = h1; (idx < size) && (HT[idx] != key); idx++, total_ct++); 526187ce0cbSSatish Balay if (idx == size) { 527fbccb6d4SPierre Jolivet for (idx = 0; (idx < h1) && (HT[idx] != key); idx++, total_ct++); 5285f80ce2aSJacob Faibussowitsch PetscCheck(idx != h1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "(%" PetscInt_FMT ",%" PetscInt_FMT ") has no entry in the hash table", row, col); 529187ce0cbSSatish Balay } 530187ce0cbSSatish Balay } 53176bd3646SJed Brown } else if (HT[idx] != key) { 532fbccb6d4SPierre Jolivet for (idx = h1; (idx < size) && (HT[idx] != key); idx++); 533c2760754SSatish Balay if (idx == size) { 534fbccb6d4SPierre Jolivet for (idx = 0; (idx < h1) && (HT[idx] != key); idx++); 5355f80ce2aSJacob Faibussowitsch PetscCheck(idx != h1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "(%" PetscInt_FMT ",%" PetscInt_FMT ") has no entry in the hash table", row, col); 536c2760754SSatish Balay } 537c2760754SSatish Balay } 538c2760754SSatish Balay /* A HASH table entry is found, so insert the values at the correct address */ 539c2760754SSatish Balay if (addv == ADD_VALUES) *(HD[idx] + (col % bs) * bs + (row % bs)) += value; 540c2760754SSatish Balay else *(HD[idx] + (col % bs) * bs + (row % bs)) = value; 5410bdbc534SSatish Balay } 54226fbe8dcSKarl Rupp } else if (!baij->donotstash) { 543ff2fd236SBarry Smith if (roworiented) { 5449566063dSJacob Faibussowitsch PetscCall(MatStashValuesRow_Private(&mat->stash, im[i], n, in, v + i * n, PETSC_FALSE)); 545ff2fd236SBarry Smith } else { 5469566063dSJacob Faibussowitsch PetscCall(MatStashValuesCol_Private(&mat->stash, im[i], n, in, v + i, m, PETSC_FALSE)); 5470bdbc534SSatish Balay } 5480bdbc534SSatish Balay } 5490bdbc534SSatish Balay } 55076bd3646SJed Brown if (PetscDefined(USE_DEBUG)) { 551abf3b562SBarry Smith baij->ht_total_ct += total_ct; 552abf3b562SBarry Smith baij->ht_insert_ct += insert_ct; 55376bd3646SJed Brown } 5543ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5550bdbc534SSatish Balay } 5560bdbc534SSatish Balay 55766976f2fSJacob Faibussowitsch static PetscErrorCode MatSetValuesBlocked_MPIBAIJ_HT(Mat mat, PetscInt m, const PetscInt im[], PetscInt n, const PetscInt in[], const PetscScalar v[], InsertMode addv) 558d71ae5a4SJacob Faibussowitsch { 5590bdbc534SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 560ace3abfcSBarry Smith PetscBool roworiented = baij->roworiented; 561b24ad042SBarry Smith PetscInt i, j, ii, jj, row, col; 562899cda47SBarry Smith PetscInt rstart = baij->rstartbs; 563d0f46423SBarry Smith PetscInt rend = mat->rmap->rend, stepval, bs = mat->rmap->bs, bs2 = baij->bs2, nbs2 = n * bs2; 564b24ad042SBarry Smith PetscInt h1, key, size = baij->ht_size, idx, *HT = baij->ht, Nbs = baij->Nbs; 565329f5518SBarry Smith PetscReal tmp; 5663eda8832SBarry Smith MatScalar **HD = baij->hd, *baij_a; 567dd6ea824SBarry Smith const PetscScalar *v_t, *value; 568b24ad042SBarry Smith PetscInt total_ct = baij->ht_total_ct, insert_ct = baij->ht_insert_ct; 5690bdbc534SSatish Balay 570d0a41580SSatish Balay PetscFunctionBegin; 57126fbe8dcSKarl Rupp if (roworiented) stepval = (n - 1) * bs; 57226fbe8dcSKarl Rupp else stepval = (m - 1) * bs; 57326fbe8dcSKarl Rupp 5740bdbc534SSatish Balay for (i = 0; i < m; i++) { 57576bd3646SJed Brown if (PetscDefined(USE_DEBUG)) { 5765f80ce2aSJacob Faibussowitsch PetscCheck(im[i] >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Negative row: %" PetscInt_FMT, im[i]); 5775f80ce2aSJacob Faibussowitsch PetscCheck(im[i] < baij->Mbs, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, im[i], baij->Mbs - 1); 57876bd3646SJed Brown } 5790bdbc534SSatish Balay row = im[i]; 580ab715e2cSSatish Balay v_t = v + i * nbs2; 581c2760754SSatish Balay if (row >= rstart && row < rend) { 5820bdbc534SSatish Balay for (j = 0; j < n; j++) { 5830bdbc534SSatish Balay col = in[j]; 5840bdbc534SSatish Balay 5850bdbc534SSatish Balay /* Look up into the Hash Table */ 586c2760754SSatish Balay key = row * Nbs + col + 1; 587c2760754SSatish Balay h1 = HASH(size, key, tmp); 5880bdbc534SSatish Balay 589c2760754SSatish Balay idx = h1; 59076bd3646SJed Brown if (PetscDefined(USE_DEBUG)) { 591187ce0cbSSatish Balay total_ct++; 592187ce0cbSSatish Balay insert_ct++; 593187ce0cbSSatish Balay if (HT[idx] != key) { 594fbccb6d4SPierre Jolivet for (idx = h1; (idx < size) && (HT[idx] != key); idx++, total_ct++); 595187ce0cbSSatish Balay if (idx == size) { 596fbccb6d4SPierre Jolivet for (idx = 0; (idx < h1) && (HT[idx] != key); idx++, total_ct++); 5975f80ce2aSJacob Faibussowitsch PetscCheck(idx != h1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "(%" PetscInt_FMT ",%" PetscInt_FMT ") has no entry in the hash table", row, col); 598187ce0cbSSatish Balay } 599187ce0cbSSatish Balay } 60076bd3646SJed Brown } else if (HT[idx] != key) { 601fbccb6d4SPierre Jolivet for (idx = h1; (idx < size) && (HT[idx] != key); idx++); 602c2760754SSatish Balay if (idx == size) { 603fbccb6d4SPierre Jolivet for (idx = 0; (idx < h1) && (HT[idx] != key); idx++); 6045f80ce2aSJacob Faibussowitsch PetscCheck(idx != h1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "(%" PetscInt_FMT ",%" PetscInt_FMT ") has no entry in the hash table", row, col); 605c2760754SSatish Balay } 606c2760754SSatish Balay } 607c2760754SSatish Balay baij_a = HD[idx]; 6080bdbc534SSatish Balay if (roworiented) { 609c2760754SSatish Balay /*value = v + i*(stepval+bs)*bs + j*bs;*/ 610187ce0cbSSatish Balay /* value = v + (i*(stepval+bs)+j)*bs; */ 611187ce0cbSSatish Balay value = v_t; 612187ce0cbSSatish Balay v_t += bs; 613fef45726SSatish Balay if (addv == ADD_VALUES) { 614c2760754SSatish Balay for (ii = 0; ii < bs; ii++, value += stepval) { 615ad540459SPierre Jolivet for (jj = ii; jj < bs2; jj += bs) baij_a[jj] += *value++; 616b4cc0f5aSSatish Balay } 617fef45726SSatish Balay } else { 618c2760754SSatish Balay for (ii = 0; ii < bs; ii++, value += stepval) { 619ad540459SPierre Jolivet for (jj = ii; jj < bs2; jj += bs) baij_a[jj] = *value++; 620fef45726SSatish Balay } 621fef45726SSatish Balay } 6220bdbc534SSatish Balay } else { 6230bdbc534SSatish Balay value = v + j * (stepval + bs) * bs + i * bs; 624fef45726SSatish Balay if (addv == ADD_VALUES) { 625b4cc0f5aSSatish Balay for (ii = 0; ii < bs; ii++, value += stepval, baij_a += bs) { 626ad540459SPierre Jolivet for (jj = 0; jj < bs; jj++) baij_a[jj] += *value++; 627fef45726SSatish Balay } 628fef45726SSatish Balay } else { 629fef45726SSatish Balay for (ii = 0; ii < bs; ii++, value += stepval, baij_a += bs) { 630ad540459SPierre Jolivet for (jj = 0; jj < bs; jj++) baij_a[jj] = *value++; 631b4cc0f5aSSatish Balay } 6320bdbc534SSatish Balay } 6330bdbc534SSatish Balay } 6340bdbc534SSatish Balay } 6350bdbc534SSatish Balay } else { 6360bdbc534SSatish Balay if (!baij->donotstash) { 6370bdbc534SSatish Balay if (roworiented) { 6389566063dSJacob Faibussowitsch PetscCall(MatStashValuesRowBlocked_Private(&mat->bstash, im[i], n, in, v, m, n, i)); 6390bdbc534SSatish Balay } else { 6409566063dSJacob Faibussowitsch PetscCall(MatStashValuesColBlocked_Private(&mat->bstash, im[i], n, in, v, m, n, i)); 6410bdbc534SSatish Balay } 6420bdbc534SSatish Balay } 6430bdbc534SSatish Balay } 6440bdbc534SSatish Balay } 64576bd3646SJed Brown if (PetscDefined(USE_DEBUG)) { 646abf3b562SBarry Smith baij->ht_total_ct += total_ct; 647abf3b562SBarry Smith baij->ht_insert_ct += insert_ct; 64876bd3646SJed Brown } 6493ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6500bdbc534SSatish Balay } 651133cdb44SSatish Balay 65266976f2fSJacob Faibussowitsch static PetscErrorCode MatGetValues_MPIBAIJ(Mat mat, PetscInt m, const PetscInt idxm[], PetscInt n, const PetscInt idxn[], PetscScalar v[]) 653d71ae5a4SJacob Faibussowitsch { 654d6de1c52SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 655d0f46423SBarry Smith PetscInt bs = mat->rmap->bs, i, j, bsrstart = mat->rmap->rstart, bsrend = mat->rmap->rend; 656d0f46423SBarry Smith PetscInt bscstart = mat->cmap->rstart, bscend = mat->cmap->rend, row, col, data; 657d6de1c52SSatish Balay 658133cdb44SSatish Balay PetscFunctionBegin; 659d6de1c52SSatish Balay for (i = 0; i < m; i++) { 66054c59aa7SJacob Faibussowitsch if (idxm[i] < 0) continue; /* negative row */ 66154c59aa7SJacob Faibussowitsch PetscCheck(idxm[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, idxm[i], mat->rmap->N - 1); 662d6de1c52SSatish Balay if (idxm[i] >= bsrstart && idxm[i] < bsrend) { 663d6de1c52SSatish Balay row = idxm[i] - bsrstart; 664d6de1c52SSatish Balay for (j = 0; j < n; j++) { 66554c59aa7SJacob Faibussowitsch if (idxn[j] < 0) continue; /* negative column */ 66654c59aa7SJacob Faibussowitsch PetscCheck(idxn[j] < mat->cmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, idxn[j], mat->cmap->N - 1); 667d6de1c52SSatish Balay if (idxn[j] >= bscstart && idxn[j] < bscend) { 668d6de1c52SSatish Balay col = idxn[j] - bscstart; 6699566063dSJacob Faibussowitsch PetscCall(MatGetValues_SeqBAIJ(baij->A, 1, &row, 1, &col, v + i * n + j)); 670d64ed03dSBarry Smith } else { 67148a46eb9SPierre Jolivet if (!baij->colmap) PetscCall(MatCreateColmap_MPIBAIJ_Private(mat)); 672aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 673eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIGetWithDefault(baij->colmap, idxn[j] / bs + 1, 0, &data)); 674fa46199cSSatish Balay data--; 67548e59246SSatish Balay #else 67648e59246SSatish Balay data = baij->colmap[idxn[j] / bs] - 1; 67748e59246SSatish Balay #endif 67848e59246SSatish Balay if ((data < 0) || (baij->garray[data / bs] != idxn[j] / bs)) *(v + i * n + j) = 0.0; 679d9d09a02SSatish Balay else { 68048e59246SSatish Balay col = data + idxn[j] % bs; 6819566063dSJacob Faibussowitsch PetscCall(MatGetValues_SeqBAIJ(baij->B, 1, &row, 1, &col, v + i * n + j)); 682d6de1c52SSatish Balay } 683d6de1c52SSatish Balay } 684d6de1c52SSatish Balay } 685f23aa3ddSBarry Smith } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "Only local values currently supported"); 686d6de1c52SSatish Balay } 6873ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 688d6de1c52SSatish Balay } 689d6de1c52SSatish Balay 69066976f2fSJacob Faibussowitsch static PetscErrorCode MatNorm_MPIBAIJ(Mat mat, NormType type, PetscReal *nrm) 691d71ae5a4SJacob Faibussowitsch { 692d6de1c52SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 693d6de1c52SSatish Balay Mat_SeqBAIJ *amat = (Mat_SeqBAIJ *)baij->A->data, *bmat = (Mat_SeqBAIJ *)baij->B->data; 694d0f46423SBarry Smith PetscInt i, j, bs2 = baij->bs2, bs = baij->A->rmap->bs, nz, row, col; 695329f5518SBarry Smith PetscReal sum = 0.0; 6963eda8832SBarry Smith MatScalar *v; 697d6de1c52SSatish Balay 698d64ed03dSBarry Smith PetscFunctionBegin; 699d6de1c52SSatish Balay if (baij->size == 1) { 7009566063dSJacob Faibussowitsch PetscCall(MatNorm(baij->A, type, nrm)); 701d6de1c52SSatish Balay } else { 702d6de1c52SSatish Balay if (type == NORM_FROBENIUS) { 703d6de1c52SSatish Balay v = amat->a; 7048a62d963SHong Zhang nz = amat->nz * bs2; 7058a62d963SHong Zhang for (i = 0; i < nz; i++) { 7069371c9d4SSatish Balay sum += PetscRealPart(PetscConj(*v) * (*v)); 7079371c9d4SSatish Balay v++; 708d6de1c52SSatish Balay } 709d6de1c52SSatish Balay v = bmat->a; 7108a62d963SHong Zhang nz = bmat->nz * bs2; 7118a62d963SHong Zhang for (i = 0; i < nz; i++) { 7129371c9d4SSatish Balay sum += PetscRealPart(PetscConj(*v) * (*v)); 7139371c9d4SSatish Balay v++; 714d6de1c52SSatish Balay } 715462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&sum, nrm, 1, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)mat))); 7168f1a2a5eSBarry Smith *nrm = PetscSqrtReal(*nrm); 7178a62d963SHong Zhang } else if (type == NORM_1) { /* max column sum */ 718e91c04dfSPierre Jolivet PetscReal *tmp; 719899cda47SBarry Smith PetscInt *jj, *garray = baij->garray, cstart = baij->rstartbs; 7206497c311SBarry Smith 7219566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(mat->cmap->N, &tmp)); 7229371c9d4SSatish Balay v = amat->a; 7239371c9d4SSatish Balay jj = amat->j; 7248a62d963SHong Zhang for (i = 0; i < amat->nz; i++) { 7258a62d963SHong Zhang for (j = 0; j < bs; j++) { 7268a62d963SHong Zhang col = bs * (cstart + *jj) + j; /* column index */ 7278a62d963SHong Zhang for (row = 0; row < bs; row++) { 7289371c9d4SSatish Balay tmp[col] += PetscAbsScalar(*v); 7299371c9d4SSatish Balay v++; 7308a62d963SHong Zhang } 7318a62d963SHong Zhang } 7328a62d963SHong Zhang jj++; 7338a62d963SHong Zhang } 7349371c9d4SSatish Balay v = bmat->a; 7359371c9d4SSatish Balay jj = bmat->j; 7368a62d963SHong Zhang for (i = 0; i < bmat->nz; i++) { 7378a62d963SHong Zhang for (j = 0; j < bs; j++) { 7388a62d963SHong Zhang col = bs * garray[*jj] + j; 7398a62d963SHong Zhang for (row = 0; row < bs; row++) { 7409371c9d4SSatish Balay tmp[col] += PetscAbsScalar(*v); 7419371c9d4SSatish Balay v++; 7428a62d963SHong Zhang } 7438a62d963SHong Zhang } 7448a62d963SHong Zhang jj++; 7458a62d963SHong Zhang } 746e91c04dfSPierre Jolivet PetscCallMPI(MPIU_Allreduce(MPI_IN_PLACE, tmp, mat->cmap->N, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)mat))); 7478a62d963SHong Zhang *nrm = 0.0; 748d0f46423SBarry Smith for (j = 0; j < mat->cmap->N; j++) { 749e91c04dfSPierre Jolivet if (tmp[j] > *nrm) *nrm = tmp[j]; 7508a62d963SHong Zhang } 7519566063dSJacob Faibussowitsch PetscCall(PetscFree(tmp)); 7528a62d963SHong Zhang } else if (type == NORM_INFINITY) { /* max row sum */ 753577dd1f9SKris Buschelman PetscReal *sums; 7549566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(bs, &sums)); 7558a62d963SHong Zhang sum = 0.0; 7568a62d963SHong Zhang for (j = 0; j < amat->mbs; j++) { 7578a62d963SHong Zhang for (row = 0; row < bs; row++) sums[row] = 0.0; 7588a62d963SHong Zhang v = amat->a + bs2 * amat->i[j]; 7598a62d963SHong Zhang nz = amat->i[j + 1] - amat->i[j]; 7608a62d963SHong Zhang for (i = 0; i < nz; i++) { 7618a62d963SHong Zhang for (col = 0; col < bs; col++) { 7628a62d963SHong Zhang for (row = 0; row < bs; row++) { 7639371c9d4SSatish Balay sums[row] += PetscAbsScalar(*v); 7649371c9d4SSatish Balay v++; 7658a62d963SHong Zhang } 7668a62d963SHong Zhang } 7678a62d963SHong Zhang } 7688a62d963SHong Zhang v = bmat->a + bs2 * bmat->i[j]; 7698a62d963SHong Zhang nz = bmat->i[j + 1] - bmat->i[j]; 7708a62d963SHong Zhang for (i = 0; i < nz; i++) { 7718a62d963SHong Zhang for (col = 0; col < bs; col++) { 7728a62d963SHong Zhang for (row = 0; row < bs; row++) { 7739371c9d4SSatish Balay sums[row] += PetscAbsScalar(*v); 7749371c9d4SSatish Balay v++; 7758a62d963SHong Zhang } 7768a62d963SHong Zhang } 7778a62d963SHong Zhang } 7788a62d963SHong Zhang for (row = 0; row < bs; row++) { 7798a62d963SHong Zhang if (sums[row] > sum) sum = sums[row]; 7808a62d963SHong Zhang } 7818a62d963SHong Zhang } 782462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&sum, nrm, 1, MPIU_REAL, MPIU_MAX, PetscObjectComm((PetscObject)mat))); 7839566063dSJacob Faibussowitsch PetscCall(PetscFree(sums)); 784ce94432eSBarry Smith } else SETERRQ(PetscObjectComm((PetscObject)mat), PETSC_ERR_SUP, "No support for this norm yet"); 785d64ed03dSBarry Smith } 7863ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 787d6de1c52SSatish Balay } 78857b952d6SSatish Balay 789fef45726SSatish Balay /* 790fef45726SSatish Balay Creates the hash table, and sets the table 791fef45726SSatish Balay This table is created only once. 79246091a0eSPierre Jolivet If new entries need to be added to the matrix 793fef45726SSatish Balay then the hash table has to be destroyed and 794fef45726SSatish Balay recreated. 795fef45726SSatish Balay */ 79666976f2fSJacob Faibussowitsch static PetscErrorCode MatCreateHashTable_MPIBAIJ_Private(Mat mat, PetscReal factor) 797d71ae5a4SJacob Faibussowitsch { 798596b8d2eSBarry Smith Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 799596b8d2eSBarry Smith Mat A = baij->A, B = baij->B; 800596b8d2eSBarry Smith Mat_SeqBAIJ *a = (Mat_SeqBAIJ *)A->data, *b = (Mat_SeqBAIJ *)B->data; 801b24ad042SBarry Smith PetscInt i, j, k, nz = a->nz + b->nz, h1, *ai = a->i, *aj = a->j, *bi = b->i, *bj = b->j; 802fca92195SBarry Smith PetscInt ht_size, bs2 = baij->bs2, rstart = baij->rstartbs; 803899cda47SBarry Smith PetscInt cstart = baij->cstartbs, *garray = baij->garray, row, col, Nbs = baij->Nbs; 804b24ad042SBarry Smith PetscInt *HT, key; 8053eda8832SBarry Smith MatScalar **HD; 806329f5518SBarry Smith PetscReal tmp; 8076cf91177SBarry Smith #if defined(PETSC_USE_INFO) 808b24ad042SBarry Smith PetscInt ct = 0, max = 0; 8094a15367fSSatish Balay #endif 810fef45726SSatish Balay 811d64ed03dSBarry Smith PetscFunctionBegin; 8123ba16761SJacob Faibussowitsch if (baij->ht) PetscFunctionReturn(PETSC_SUCCESS); 813fef45726SSatish Balay 814fca92195SBarry Smith baij->ht_size = (PetscInt)(factor * nz); 815fca92195SBarry Smith ht_size = baij->ht_size; 8160bdbc534SSatish Balay 817fef45726SSatish Balay /* Allocate Memory for Hash Table */ 8189566063dSJacob Faibussowitsch PetscCall(PetscCalloc2(ht_size, &baij->hd, ht_size, &baij->ht)); 819b9e4cc15SSatish Balay HD = baij->hd; 820a07cd24cSSatish Balay HT = baij->ht; 821b9e4cc15SSatish Balay 822596b8d2eSBarry Smith /* Loop Over A */ 8230bdbc534SSatish Balay for (i = 0; i < a->mbs; i++) { 824596b8d2eSBarry Smith for (j = ai[i]; j < ai[i + 1]; j++) { 8250bdbc534SSatish Balay row = i + rstart; 8260bdbc534SSatish Balay col = aj[j] + cstart; 827596b8d2eSBarry Smith 828187ce0cbSSatish Balay key = row * Nbs + col + 1; 829fca92195SBarry Smith h1 = HASH(ht_size, key, tmp); 830fca92195SBarry Smith for (k = 0; k < ht_size; k++) { 831fca92195SBarry Smith if (!HT[(h1 + k) % ht_size]) { 832fca92195SBarry Smith HT[(h1 + k) % ht_size] = key; 833fca92195SBarry Smith HD[(h1 + k) % ht_size] = a->a + j * bs2; 834596b8d2eSBarry Smith break; 8356cf91177SBarry Smith #if defined(PETSC_USE_INFO) 836187ce0cbSSatish Balay } else { 837187ce0cbSSatish Balay ct++; 838187ce0cbSSatish Balay #endif 839596b8d2eSBarry Smith } 840187ce0cbSSatish Balay } 8416cf91177SBarry Smith #if defined(PETSC_USE_INFO) 842187ce0cbSSatish Balay if (k > max) max = k; 843187ce0cbSSatish Balay #endif 844596b8d2eSBarry Smith } 845596b8d2eSBarry Smith } 846596b8d2eSBarry Smith /* Loop Over B */ 8470bdbc534SSatish Balay for (i = 0; i < b->mbs; i++) { 848596b8d2eSBarry Smith for (j = bi[i]; j < bi[i + 1]; j++) { 8490bdbc534SSatish Balay row = i + rstart; 8500bdbc534SSatish Balay col = garray[bj[j]]; 851187ce0cbSSatish Balay key = row * Nbs + col + 1; 852fca92195SBarry Smith h1 = HASH(ht_size, key, tmp); 853fca92195SBarry Smith for (k = 0; k < ht_size; k++) { 854fca92195SBarry Smith if (!HT[(h1 + k) % ht_size]) { 855fca92195SBarry Smith HT[(h1 + k) % ht_size] = key; 856fca92195SBarry Smith HD[(h1 + k) % ht_size] = b->a + j * bs2; 857596b8d2eSBarry Smith break; 8586cf91177SBarry Smith #if defined(PETSC_USE_INFO) 859187ce0cbSSatish Balay } else { 860187ce0cbSSatish Balay ct++; 861187ce0cbSSatish Balay #endif 862596b8d2eSBarry Smith } 863187ce0cbSSatish Balay } 8646cf91177SBarry Smith #if defined(PETSC_USE_INFO) 865187ce0cbSSatish Balay if (k > max) max = k; 866187ce0cbSSatish Balay #endif 867596b8d2eSBarry Smith } 868596b8d2eSBarry Smith } 869596b8d2eSBarry Smith 870596b8d2eSBarry Smith /* Print Summary */ 8716cf91177SBarry Smith #if defined(PETSC_USE_INFO) 872fca92195SBarry Smith for (i = 0, j = 0; i < ht_size; i++) { 87326fbe8dcSKarl Rupp if (HT[i]) j++; 874c38d4ed2SBarry Smith } 875835f2295SStefano Zampini PetscCall(PetscInfo(mat, "Average Search = %5.2g,max search = %" PetscInt_FMT "\n", (!j) ? 0.0 : (double)(((PetscReal)(ct + j)) / j), max)); 876187ce0cbSSatish Balay #endif 8773ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 878596b8d2eSBarry Smith } 87957b952d6SSatish Balay 88066976f2fSJacob Faibussowitsch static PetscErrorCode MatAssemblyBegin_MPIBAIJ(Mat mat, MatAssemblyType mode) 881d71ae5a4SJacob Faibussowitsch { 882bbb85fb3SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 883b24ad042SBarry Smith PetscInt nstash, reallocs; 884bbb85fb3SSatish Balay 885bbb85fb3SSatish Balay PetscFunctionBegin; 8863ba16761SJacob Faibussowitsch if (baij->donotstash || mat->nooffprocentries) PetscFunctionReturn(PETSC_SUCCESS); 887bbb85fb3SSatish Balay 8889566063dSJacob Faibussowitsch PetscCall(MatStashScatterBegin_Private(mat, &mat->stash, mat->rmap->range)); 8899566063dSJacob Faibussowitsch PetscCall(MatStashScatterBegin_Private(mat, &mat->bstash, baij->rangebs)); 8909566063dSJacob Faibussowitsch PetscCall(MatStashGetInfo_Private(&mat->stash, &nstash, &reallocs)); 8919566063dSJacob Faibussowitsch PetscCall(PetscInfo(mat, "Stash has %" PetscInt_FMT " entries,uses %" PetscInt_FMT " mallocs.\n", nstash, reallocs)); 8929566063dSJacob Faibussowitsch PetscCall(MatStashGetInfo_Private(&mat->bstash, &nstash, &reallocs)); 8939566063dSJacob Faibussowitsch PetscCall(PetscInfo(mat, "Block-Stash has %" PetscInt_FMT " entries, uses %" PetscInt_FMT " mallocs.\n", nstash, reallocs)); 8943ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 895bbb85fb3SSatish Balay } 896bbb85fb3SSatish Balay 89766976f2fSJacob Faibussowitsch static PetscErrorCode MatAssemblyEnd_MPIBAIJ(Mat mat, MatAssemblyType mode) 898d71ae5a4SJacob Faibussowitsch { 899bbb85fb3SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 90091c97fd4SSatish Balay Mat_SeqBAIJ *a = (Mat_SeqBAIJ *)baij->A->data; 901b24ad042SBarry Smith PetscInt i, j, rstart, ncols, flg, bs2 = baij->bs2; 902e44c0bd4SBarry Smith PetscInt *row, *col; 903ace3abfcSBarry Smith PetscBool r1, r2, r3, other_disassembled; 9043eda8832SBarry Smith MatScalar *val; 905b24ad042SBarry Smith PetscMPIInt n; 906bbb85fb3SSatish Balay 907bbb85fb3SSatish Balay PetscFunctionBegin; 9085fd66863SKarl Rupp /* do not use 'b=(Mat_SeqBAIJ*)baij->B->data' as B can be reset in disassembly */ 9094cb17eb5SBarry Smith if (!baij->donotstash && !mat->nooffprocentries) { 910a2d1c673SSatish Balay while (1) { 9119566063dSJacob Faibussowitsch PetscCall(MatStashScatterGetMesg_Private(&mat->stash, &n, &row, &col, &val, &flg)); 912a2d1c673SSatish Balay if (!flg) break; 913a2d1c673SSatish Balay 914bbb85fb3SSatish Balay for (i = 0; i < n;) { 915bbb85fb3SSatish Balay /* Now identify the consecutive vals belonging to the same row */ 91626fbe8dcSKarl Rupp for (j = i, rstart = row[j]; j < n; j++) { 91726fbe8dcSKarl Rupp if (row[j] != rstart) break; 91826fbe8dcSKarl Rupp } 919bbb85fb3SSatish Balay if (j < n) ncols = j - i; 920bbb85fb3SSatish Balay else ncols = n - i; 921bbb85fb3SSatish Balay /* Now assemble all these values with a single function call */ 9229566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPIBAIJ(mat, 1, row + i, ncols, col + i, val + i, mat->insertmode)); 923bbb85fb3SSatish Balay i = j; 924bbb85fb3SSatish Balay } 925bbb85fb3SSatish Balay } 9269566063dSJacob Faibussowitsch PetscCall(MatStashScatterEnd_Private(&mat->stash)); 927a2d1c673SSatish Balay /* Now process the block-stash. Since the values are stashed column-oriented, 9285e116b59SBarry Smith set the row-oriented flag to column-oriented, and after MatSetValues() 929a2d1c673SSatish Balay restore the original flags */ 930a2d1c673SSatish Balay r1 = baij->roworiented; 931a2d1c673SSatish Balay r2 = a->roworiented; 93291c97fd4SSatish Balay r3 = ((Mat_SeqBAIJ *)baij->B->data)->roworiented; 93326fbe8dcSKarl Rupp 9347c922b88SBarry Smith baij->roworiented = PETSC_FALSE; 9357c922b88SBarry Smith a->roworiented = PETSC_FALSE; 936f4f49eeaSPierre Jolivet ((Mat_SeqBAIJ *)baij->B->data)->roworiented = PETSC_FALSE; 937a2d1c673SSatish Balay while (1) { 9389566063dSJacob Faibussowitsch PetscCall(MatStashScatterGetMesg_Private(&mat->bstash, &n, &row, &col, &val, &flg)); 939a2d1c673SSatish Balay if (!flg) break; 940a2d1c673SSatish Balay 941a2d1c673SSatish Balay for (i = 0; i < n;) { 942a2d1c673SSatish Balay /* Now identify the consecutive vals belonging to the same row */ 94326fbe8dcSKarl Rupp for (j = i, rstart = row[j]; j < n; j++) { 94426fbe8dcSKarl Rupp if (row[j] != rstart) break; 94526fbe8dcSKarl Rupp } 946a2d1c673SSatish Balay if (j < n) ncols = j - i; 947a2d1c673SSatish Balay else ncols = n - i; 9489566063dSJacob Faibussowitsch PetscCall(MatSetValuesBlocked_MPIBAIJ(mat, 1, row + i, ncols, col + i, val + i * bs2, mat->insertmode)); 949a2d1c673SSatish Balay i = j; 950a2d1c673SSatish Balay } 951a2d1c673SSatish Balay } 9529566063dSJacob Faibussowitsch PetscCall(MatStashScatterEnd_Private(&mat->bstash)); 95326fbe8dcSKarl Rupp 954a2d1c673SSatish Balay baij->roworiented = r1; 955a2d1c673SSatish Balay a->roworiented = r2; 9565e116b59SBarry Smith ((Mat_SeqBAIJ *)baij->B->data)->roworiented = r3; 957bbb85fb3SSatish Balay } 958bbb85fb3SSatish Balay 9599566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(baij->A, mode)); 9609566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(baij->A, mode)); 961bbb85fb3SSatish Balay 962bbb85fb3SSatish Balay /* determine if any processor has disassembled, if so we must 9636aad120cSJose E. Roman also disassemble ourselves, in order that we may reassemble. */ 964bbb85fb3SSatish Balay /* 965bbb85fb3SSatish Balay if nonzero structure of submatrix B cannot change then we know that 966bbb85fb3SSatish Balay no processor disassembled thus we can skip this stuff 967bbb85fb3SSatish Balay */ 968bbb85fb3SSatish Balay if (!((Mat_SeqBAIJ *)baij->B->data)->nonew) { 969462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&mat->was_assembled, &other_disassembled, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)mat))); 97048a46eb9SPierre Jolivet if (mat->was_assembled && !other_disassembled) PetscCall(MatDisAssemble_MPIBAIJ(mat)); 971bbb85fb3SSatish Balay } 972bbb85fb3SSatish Balay 97348a46eb9SPierre Jolivet if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) PetscCall(MatSetUpMultiply_MPIBAIJ(mat)); 9749566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(baij->B, mode)); 9759566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(baij->B, mode)); 976bbb85fb3SSatish Balay 9776cf91177SBarry Smith #if defined(PETSC_USE_INFO) 978bbb85fb3SSatish Balay if (baij->ht && mode == MAT_FINAL_ASSEMBLY) { 9799566063dSJacob Faibussowitsch PetscCall(PetscInfo(mat, "Average Hash Table Search in MatSetValues = %5.2f\n", (double)((PetscReal)baij->ht_total_ct) / baij->ht_insert_ct)); 98026fbe8dcSKarl Rupp 981bbb85fb3SSatish Balay baij->ht_total_ct = 0; 982bbb85fb3SSatish Balay baij->ht_insert_ct = 0; 983bbb85fb3SSatish Balay } 984bbb85fb3SSatish Balay #endif 985bbb85fb3SSatish Balay if (baij->ht_flag && !baij->ht && mode == MAT_FINAL_ASSEMBLY) { 9869566063dSJacob Faibussowitsch PetscCall(MatCreateHashTable_MPIBAIJ_Private(mat, baij->ht_fact)); 98726fbe8dcSKarl Rupp 988bbb85fb3SSatish Balay mat->ops->setvalues = MatSetValues_MPIBAIJ_HT; 989bbb85fb3SSatish Balay mat->ops->setvaluesblocked = MatSetValuesBlocked_MPIBAIJ_HT; 990bbb85fb3SSatish Balay } 991bbb85fb3SSatish Balay 9929566063dSJacob Faibussowitsch PetscCall(PetscFree2(baij->rowvalues, baij->rowindices)); 99326fbe8dcSKarl Rupp 994f4259b30SLisandro Dalcin baij->rowvalues = NULL; 9954f9cfa9eSBarry Smith 9964f9cfa9eSBarry Smith /* if no new nonzero locations are allowed in matrix then only set the matrix state the first time through */ 997f4f49eeaSPierre Jolivet if ((!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) || !((Mat_SeqBAIJ *)baij->A->data)->nonew) { 998e56f5c9eSBarry Smith PetscObjectState state = baij->A->nonzerostate + baij->B->nonzerostate; 999462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&state, &mat->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)mat))); 1000e56f5c9eSBarry Smith } 10013ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1002bbb85fb3SSatish Balay } 100357b952d6SSatish Balay 10049804daf3SBarry Smith #include <petscdraw.h> 1005d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatView_MPIBAIJ_ASCIIorDraworSocket(Mat mat, PetscViewer viewer) 1006d71ae5a4SJacob Faibussowitsch { 100757b952d6SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 10087da1fb6eSBarry Smith PetscMPIInt rank = baij->rank; 1009d0f46423SBarry Smith PetscInt bs = mat->rmap->bs; 1010ace3abfcSBarry Smith PetscBool iascii, isdraw; 1011b0a32e0cSBarry Smith PetscViewer sviewer; 1012f3ef73ceSBarry Smith PetscViewerFormat format; 101357b952d6SSatish Balay 1014d64ed03dSBarry Smith PetscFunctionBegin; 10159566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &iascii)); 10169566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERDRAW, &isdraw)); 101732077d6dSBarry Smith if (iascii) { 10189566063dSJacob Faibussowitsch PetscCall(PetscViewerGetFormat(viewer, &format)); 1019456192e2SBarry Smith if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 10204e220ebcSLois Curfman McInnes MatInfo info; 10219566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)mat), &rank)); 10229566063dSJacob Faibussowitsch PetscCall(MatGetInfo(mat, MAT_LOCAL, &info)); 10239566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPushSynchronized(viewer)); 10249371c9d4SSatish Balay PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] Local rows %" PetscInt_FMT " nz %" PetscInt_FMT " nz alloced %" PetscInt_FMT " bs %" PetscInt_FMT " mem %g\n", rank, mat->rmap->n, (PetscInt)info.nz_used, (PetscInt)info.nz_allocated, 1025835f2295SStefano Zampini mat->rmap->bs, info.memory)); 10269566063dSJacob Faibussowitsch PetscCall(MatGetInfo(baij->A, MAT_LOCAL, &info)); 10279566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] on-diagonal part: nz %" PetscInt_FMT " \n", rank, (PetscInt)info.nz_used)); 10289566063dSJacob Faibussowitsch PetscCall(MatGetInfo(baij->B, MAT_LOCAL, &info)); 10299566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] off-diagonal part: nz %" PetscInt_FMT " \n", rank, (PetscInt)info.nz_used)); 10309566063dSJacob Faibussowitsch PetscCall(PetscViewerFlush(viewer)); 10319566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPopSynchronized(viewer)); 10329566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "Information on VecScatter used in matrix-vector product: \n")); 10339566063dSJacob Faibussowitsch PetscCall(VecScatterView(baij->Mvctx, viewer)); 10343ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1035fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_INFO) { 10369566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, " block size is %" PetscInt_FMT "\n", bs)); 10373ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 103804929863SHong Zhang } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) { 10393ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 104057b952d6SSatish Balay } 104157b952d6SSatish Balay } 104257b952d6SSatish Balay 10430f5bd95cSBarry Smith if (isdraw) { 1044b0a32e0cSBarry Smith PetscDraw draw; 1045ace3abfcSBarry Smith PetscBool isnull; 10469566063dSJacob Faibussowitsch PetscCall(PetscViewerDrawGetDraw(viewer, 0, &draw)); 10479566063dSJacob Faibussowitsch PetscCall(PetscDrawIsNull(draw, &isnull)); 10483ba16761SJacob Faibussowitsch if (isnull) PetscFunctionReturn(PETSC_SUCCESS); 104957b952d6SSatish Balay } 105057b952d6SSatish Balay 10517da1fb6eSBarry Smith { 105257b952d6SSatish Balay /* assemble the entire matrix onto first processor. */ 105357b952d6SSatish Balay Mat A; 105457b952d6SSatish Balay Mat_SeqBAIJ *Aloc; 1055d0f46423SBarry Smith PetscInt M = mat->rmap->N, N = mat->cmap->N, *ai, *aj, col, i, j, k, *rvals, mbs = baij->mbs; 10563eda8832SBarry Smith MatScalar *a; 10573e219373SBarry Smith const char *matname; 105857b952d6SSatish Balay 1059f204ca49SKris Buschelman /* Here we are creating a temporary matrix, so will assume MPIBAIJ is acceptable */ 1060f204ca49SKris Buschelman /* Perhaps this should be the type of mat? */ 10619566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)mat), &A)); 1062dd400576SPatrick Sanan if (rank == 0) { 10639566063dSJacob Faibussowitsch PetscCall(MatSetSizes(A, M, N, M, N)); 1064d64ed03dSBarry Smith } else { 10659566063dSJacob Faibussowitsch PetscCall(MatSetSizes(A, 0, 0, M, N)); 106657b952d6SSatish Balay } 10679566063dSJacob Faibussowitsch PetscCall(MatSetType(A, MATMPIBAIJ)); 10689566063dSJacob Faibussowitsch PetscCall(MatMPIBAIJSetPreallocation(A, mat->rmap->bs, 0, NULL, 0, NULL)); 10699566063dSJacob Faibussowitsch PetscCall(MatSetOption(A, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_FALSE)); 107057b952d6SSatish Balay 107157b952d6SSatish Balay /* copy over the A part */ 107257b952d6SSatish Balay Aloc = (Mat_SeqBAIJ *)baij->A->data; 10739371c9d4SSatish Balay ai = Aloc->i; 10749371c9d4SSatish Balay aj = Aloc->j; 10759371c9d4SSatish Balay a = Aloc->a; 10769566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(bs, &rvals)); 107757b952d6SSatish Balay 107857b952d6SSatish Balay for (i = 0; i < mbs; i++) { 1079899cda47SBarry Smith rvals[0] = bs * (baij->rstartbs + i); 108026fbe8dcSKarl Rupp for (j = 1; j < bs; j++) rvals[j] = rvals[j - 1] + 1; 108157b952d6SSatish Balay for (j = ai[i]; j < ai[i + 1]; j++) { 1082899cda47SBarry Smith col = (baij->cstartbs + aj[j]) * bs; 108357b952d6SSatish Balay for (k = 0; k < bs; k++) { 10849566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPIBAIJ(A, bs, rvals, 1, &col, a, INSERT_VALUES)); 10859371c9d4SSatish Balay col++; 10869371c9d4SSatish Balay a += bs; 108757b952d6SSatish Balay } 108857b952d6SSatish Balay } 108957b952d6SSatish Balay } 109057b952d6SSatish Balay /* copy over the B part */ 109157b952d6SSatish Balay Aloc = (Mat_SeqBAIJ *)baij->B->data; 10929371c9d4SSatish Balay ai = Aloc->i; 10939371c9d4SSatish Balay aj = Aloc->j; 10949371c9d4SSatish Balay a = Aloc->a; 109557b952d6SSatish Balay for (i = 0; i < mbs; i++) { 1096899cda47SBarry Smith rvals[0] = bs * (baij->rstartbs + i); 109726fbe8dcSKarl Rupp for (j = 1; j < bs; j++) rvals[j] = rvals[j - 1] + 1; 109857b952d6SSatish Balay for (j = ai[i]; j < ai[i + 1]; j++) { 109957b952d6SSatish Balay col = baij->garray[aj[j]] * bs; 110057b952d6SSatish Balay for (k = 0; k < bs; k++) { 11019566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPIBAIJ(A, bs, rvals, 1, &col, a, INSERT_VALUES)); 11029371c9d4SSatish Balay col++; 11039371c9d4SSatish Balay a += bs; 110457b952d6SSatish Balay } 110557b952d6SSatish Balay } 110657b952d6SSatish Balay } 11079566063dSJacob Faibussowitsch PetscCall(PetscFree(rvals)); 11089566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(A, MAT_FINAL_ASSEMBLY)); 11099566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(A, MAT_FINAL_ASSEMBLY)); 111055843e3eSBarry Smith /* 111155843e3eSBarry Smith Everyone has to call to draw the matrix since the graphics waits are 1112b0a32e0cSBarry Smith synchronized across all processors that share the PetscDraw object 111355843e3eSBarry Smith */ 11149566063dSJacob Faibussowitsch PetscCall(PetscViewerGetSubViewer(viewer, PETSC_COMM_SELF, &sviewer)); 111523a3927dSBarry Smith if (((PetscObject)mat)->name) PetscCall(PetscObjectGetName((PetscObject)mat, &matname)); 1116dd400576SPatrick Sanan if (rank == 0) { 1117f4f49eeaSPierre Jolivet if (((PetscObject)mat)->name) PetscCall(PetscObjectSetName((PetscObject)((Mat_MPIBAIJ *)A->data)->A, matname)); 1118f4f49eeaSPierre Jolivet PetscCall(MatView_SeqBAIJ(((Mat_MPIBAIJ *)A->data)->A, sviewer)); 111957b952d6SSatish Balay } 11209566063dSJacob Faibussowitsch PetscCall(PetscViewerRestoreSubViewer(viewer, PETSC_COMM_SELF, &sviewer)); 11219566063dSJacob Faibussowitsch PetscCall(MatDestroy(&A)); 112257b952d6SSatish Balay } 11233ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 112457b952d6SSatish Balay } 112557b952d6SSatish Balay 1126618cc2edSLisandro Dalcin /* Used for both MPIBAIJ and MPISBAIJ matrices */ 1127d71ae5a4SJacob Faibussowitsch PetscErrorCode MatView_MPIBAIJ_Binary(Mat mat, PetscViewer viewer) 1128d71ae5a4SJacob Faibussowitsch { 1129b51a4376SLisandro Dalcin Mat_MPIBAIJ *aij = (Mat_MPIBAIJ *)mat->data; 1130b51a4376SLisandro Dalcin Mat_SeqBAIJ *A = (Mat_SeqBAIJ *)aij->A->data; 1131b51a4376SLisandro Dalcin Mat_SeqBAIJ *B = (Mat_SeqBAIJ *)aij->B->data; 1132b51a4376SLisandro Dalcin const PetscInt *garray = aij->garray; 113317a3732bSBarry Smith PetscInt header[4], M, N, m, rs, cs, bs, cnt, i, j, ja, jb, k, l; 11346497c311SBarry Smith PetscCount nz, hnz; 1135b51a4376SLisandro Dalcin PetscInt *rowlens, *colidxs; 1136b51a4376SLisandro Dalcin PetscScalar *matvals; 113717a3732bSBarry Smith PetscMPIInt rank; 1138660746e0SBarry Smith 1139660746e0SBarry Smith PetscFunctionBegin; 11409566063dSJacob Faibussowitsch PetscCall(PetscViewerSetUp(viewer)); 1141b51a4376SLisandro Dalcin 1142b51a4376SLisandro Dalcin M = mat->rmap->N; 1143b51a4376SLisandro Dalcin N = mat->cmap->N; 1144b51a4376SLisandro Dalcin m = mat->rmap->n; 1145b51a4376SLisandro Dalcin rs = mat->rmap->rstart; 1146b51a4376SLisandro Dalcin cs = mat->cmap->rstart; 1147b51a4376SLisandro Dalcin bs = mat->rmap->bs; 1148b51a4376SLisandro Dalcin nz = bs * bs * (A->nz + B->nz); 1149b51a4376SLisandro Dalcin 1150b51a4376SLisandro Dalcin /* write matrix header */ 1151660746e0SBarry Smith header[0] = MAT_FILE_CLASSID; 11529371c9d4SSatish Balay header[1] = M; 11539371c9d4SSatish Balay header[2] = N; 11546497c311SBarry Smith PetscCallMPI(MPI_Reduce(&nz, &hnz, 1, MPIU_COUNT, MPI_SUM, 0, PetscObjectComm((PetscObject)mat))); 115517a3732bSBarry Smith PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)mat), &rank)); 115617a3732bSBarry Smith if (rank == 0) PetscCall(PetscIntCast(hnz, &header[3])); 11579566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryWrite(viewer, header, 4, PETSC_INT)); 1158660746e0SBarry Smith 1159b51a4376SLisandro Dalcin /* fill in and store row lengths */ 11609566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m, &rowlens)); 1161b51a4376SLisandro Dalcin for (cnt = 0, i = 0; i < A->mbs; i++) 11629371c9d4SSatish Balay for (j = 0; j < bs; j++) rowlens[cnt++] = bs * (A->i[i + 1] - A->i[i] + B->i[i + 1] - B->i[i]); 11639566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryWriteAll(viewer, rowlens, m, rs, M, PETSC_INT)); 11649566063dSJacob Faibussowitsch PetscCall(PetscFree(rowlens)); 1165660746e0SBarry Smith 1166b51a4376SLisandro Dalcin /* fill in and store column indices */ 11679566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nz, &colidxs)); 1168b51a4376SLisandro Dalcin for (cnt = 0, i = 0; i < A->mbs; i++) { 1169b51a4376SLisandro Dalcin for (k = 0; k < bs; k++) { 1170b51a4376SLisandro Dalcin for (jb = B->i[i]; jb < B->i[i + 1]; jb++) { 1171b51a4376SLisandro Dalcin if (garray[B->j[jb]] > cs / bs) break; 11729371c9d4SSatish Balay for (l = 0; l < bs; l++) colidxs[cnt++] = bs * garray[B->j[jb]] + l; 1173660746e0SBarry Smith } 1174b51a4376SLisandro Dalcin for (ja = A->i[i]; ja < A->i[i + 1]; ja++) 11759371c9d4SSatish Balay for (l = 0; l < bs; l++) colidxs[cnt++] = bs * A->j[ja] + l + cs; 1176b51a4376SLisandro Dalcin for (; jb < B->i[i + 1]; jb++) 11779371c9d4SSatish Balay for (l = 0; l < bs; l++) colidxs[cnt++] = bs * garray[B->j[jb]] + l; 1178660746e0SBarry Smith } 1179660746e0SBarry Smith } 11806497c311SBarry Smith PetscCheck(cnt == nz, PETSC_COMM_SELF, PETSC_ERR_LIB, "Internal PETSc error: cnt = %" PetscInt_FMT " nz = %" PetscCount_FMT, cnt, nz); 11819566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryWriteAll(viewer, colidxs, nz, PETSC_DECIDE, PETSC_DECIDE, PETSC_INT)); 11829566063dSJacob Faibussowitsch PetscCall(PetscFree(colidxs)); 1183660746e0SBarry Smith 1184b51a4376SLisandro Dalcin /* fill in and store nonzero values */ 11859566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nz, &matvals)); 1186b51a4376SLisandro Dalcin for (cnt = 0, i = 0; i < A->mbs; i++) { 1187b51a4376SLisandro Dalcin for (k = 0; k < bs; k++) { 1188b51a4376SLisandro Dalcin for (jb = B->i[i]; jb < B->i[i + 1]; jb++) { 1189b51a4376SLisandro Dalcin if (garray[B->j[jb]] > cs / bs) break; 11909371c9d4SSatish Balay for (l = 0; l < bs; l++) matvals[cnt++] = B->a[bs * (bs * jb + l) + k]; 1191660746e0SBarry Smith } 1192b51a4376SLisandro Dalcin for (ja = A->i[i]; ja < A->i[i + 1]; ja++) 11939371c9d4SSatish Balay for (l = 0; l < bs; l++) matvals[cnt++] = A->a[bs * (bs * ja + l) + k]; 1194b51a4376SLisandro Dalcin for (; jb < B->i[i + 1]; jb++) 11959371c9d4SSatish Balay for (l = 0; l < bs; l++) matvals[cnt++] = B->a[bs * (bs * jb + l) + k]; 1196660746e0SBarry Smith } 1197b51a4376SLisandro Dalcin } 11989566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryWriteAll(viewer, matvals, nz, PETSC_DECIDE, PETSC_DECIDE, PETSC_SCALAR)); 11999566063dSJacob Faibussowitsch PetscCall(PetscFree(matvals)); 1200660746e0SBarry Smith 1201b51a4376SLisandro Dalcin /* write block size option to the viewer's .info file */ 12029566063dSJacob Faibussowitsch PetscCall(MatView_Binary_BlockSizes(mat, viewer)); 12033ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1204660746e0SBarry Smith } 1205660746e0SBarry Smith 1206d71ae5a4SJacob Faibussowitsch PetscErrorCode MatView_MPIBAIJ(Mat mat, PetscViewer viewer) 1207d71ae5a4SJacob Faibussowitsch { 1208ace3abfcSBarry Smith PetscBool iascii, isdraw, issocket, isbinary; 120957b952d6SSatish Balay 1210d64ed03dSBarry Smith PetscFunctionBegin; 12119566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &iascii)); 12129566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERDRAW, &isdraw)); 12139566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERSOCKET, &issocket)); 12149566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary)); 1215660746e0SBarry Smith if (iascii || isdraw || issocket) { 12169566063dSJacob Faibussowitsch PetscCall(MatView_MPIBAIJ_ASCIIorDraworSocket(mat, viewer)); 12171baa6e33SBarry Smith } else if (isbinary) PetscCall(MatView_MPIBAIJ_Binary(mat, viewer)); 12183ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 121957b952d6SSatish Balay } 122057b952d6SSatish Balay 122166976f2fSJacob Faibussowitsch static PetscErrorCode MatMult_MPIBAIJ(Mat A, Vec xx, Vec yy) 1222d71ae5a4SJacob Faibussowitsch { 1223cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 1224b24ad042SBarry Smith PetscInt nt; 1225cee3aa6bSSatish Balay 1226d64ed03dSBarry Smith PetscFunctionBegin; 12279566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(xx, &nt)); 12285f80ce2aSJacob Faibussowitsch PetscCheck(nt == A->cmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Incompatible partition of A and xx"); 12299566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(yy, &nt)); 1230da81f932SPierre Jolivet PetscCheck(nt == A->rmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Incompatible partition of A and yy"); 12319566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(a->Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD)); 12329566063dSJacob Faibussowitsch PetscCall((*a->A->ops->mult)(a->A, xx, yy)); 12339566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(a->Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD)); 12349566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multadd)(a->B, a->lvec, yy, yy)); 12353ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1236cee3aa6bSSatish Balay } 1237cee3aa6bSSatish Balay 123866976f2fSJacob Faibussowitsch static PetscErrorCode MatMultAdd_MPIBAIJ(Mat A, Vec xx, Vec yy, Vec zz) 1239d71ae5a4SJacob Faibussowitsch { 1240cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 1241d64ed03dSBarry Smith 1242d64ed03dSBarry Smith PetscFunctionBegin; 12439566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(a->Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD)); 12449566063dSJacob Faibussowitsch PetscCall((*a->A->ops->multadd)(a->A, xx, yy, zz)); 12459566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(a->Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD)); 12469566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multadd)(a->B, a->lvec, zz, zz)); 12473ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1248cee3aa6bSSatish Balay } 1249cee3aa6bSSatish Balay 125066976f2fSJacob Faibussowitsch static PetscErrorCode MatMultTranspose_MPIBAIJ(Mat A, Vec xx, Vec yy) 1251d71ae5a4SJacob Faibussowitsch { 1252cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 1253cee3aa6bSSatish Balay 1254d64ed03dSBarry Smith PetscFunctionBegin; 1255cee3aa6bSSatish Balay /* do nondiagonal part */ 12569566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multtranspose)(a->B, xx, a->lvec)); 1257cee3aa6bSSatish Balay /* do local part */ 12589566063dSJacob Faibussowitsch PetscCall((*a->A->ops->multtranspose)(a->A, xx, yy)); 1259e4a140f6SJunchao Zhang /* add partial results together */ 12609566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(a->Mvctx, a->lvec, yy, ADD_VALUES, SCATTER_REVERSE)); 12619566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(a->Mvctx, a->lvec, yy, ADD_VALUES, SCATTER_REVERSE)); 12623ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1263cee3aa6bSSatish Balay } 1264cee3aa6bSSatish Balay 126566976f2fSJacob Faibussowitsch static PetscErrorCode MatMultTransposeAdd_MPIBAIJ(Mat A, Vec xx, Vec yy, Vec zz) 1266d71ae5a4SJacob Faibussowitsch { 1267cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 1268cee3aa6bSSatish Balay 1269d64ed03dSBarry Smith PetscFunctionBegin; 1270cee3aa6bSSatish Balay /* do nondiagonal part */ 12719566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multtranspose)(a->B, xx, a->lvec)); 1272cee3aa6bSSatish Balay /* do local part */ 12739566063dSJacob Faibussowitsch PetscCall((*a->A->ops->multtransposeadd)(a->A, xx, yy, zz)); 1274e4a140f6SJunchao Zhang /* add partial results together */ 12759566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(a->Mvctx, a->lvec, zz, ADD_VALUES, SCATTER_REVERSE)); 12769566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(a->Mvctx, a->lvec, zz, ADD_VALUES, SCATTER_REVERSE)); 12773ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1278cee3aa6bSSatish Balay } 1279cee3aa6bSSatish Balay 1280cee3aa6bSSatish Balay /* 1281cee3aa6bSSatish Balay This only works correctly for square matrices where the subblock A->A is the 1282cee3aa6bSSatish Balay diagonal block 1283cee3aa6bSSatish Balay */ 128466976f2fSJacob Faibussowitsch static PetscErrorCode MatGetDiagonal_MPIBAIJ(Mat A, Vec v) 1285d71ae5a4SJacob Faibussowitsch { 1286d64ed03dSBarry Smith PetscFunctionBegin; 12875f80ce2aSJacob Faibussowitsch PetscCheck(A->rmap->N == A->cmap->N, PETSC_COMM_SELF, PETSC_ERR_SUP, "Supports only square matrix where A->A is diag block"); 12889566063dSJacob Faibussowitsch PetscCall(MatGetDiagonal(((Mat_MPIBAIJ *)A->data)->A, v)); 12893ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1290cee3aa6bSSatish Balay } 1291cee3aa6bSSatish Balay 129266976f2fSJacob Faibussowitsch static PetscErrorCode MatScale_MPIBAIJ(Mat A, PetscScalar aa) 1293d71ae5a4SJacob Faibussowitsch { 1294cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 1295d64ed03dSBarry Smith 1296d64ed03dSBarry Smith PetscFunctionBegin; 12979566063dSJacob Faibussowitsch PetscCall(MatScale(a->A, aa)); 12989566063dSJacob Faibussowitsch PetscCall(MatScale(a->B, aa)); 12993ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1300cee3aa6bSSatish Balay } 1301026e39d0SSatish Balay 1302523895eeSPierre Jolivet static PetscErrorCode MatGetRow_MPIBAIJ(Mat matin, PetscInt row, PetscInt *nz, PetscInt **idx, PetscScalar **v) 1303d71ae5a4SJacob Faibussowitsch { 1304acdf5bf4SSatish Balay Mat_MPIBAIJ *mat = (Mat_MPIBAIJ *)matin->data; 130587828ca2SBarry Smith PetscScalar *vworkA, *vworkB, **pvA, **pvB, *v_p; 1306d0f46423SBarry Smith PetscInt bs = matin->rmap->bs, bs2 = mat->bs2, i, *cworkA, *cworkB, **pcA, **pcB; 1307d0f46423SBarry Smith PetscInt nztot, nzA, nzB, lrow, brstart = matin->rmap->rstart, brend = matin->rmap->rend; 1308899cda47SBarry Smith PetscInt *cmap, *idx_p, cstart = mat->cstartbs; 1309acdf5bf4SSatish Balay 1310d64ed03dSBarry Smith PetscFunctionBegin; 13115f80ce2aSJacob Faibussowitsch PetscCheck(row >= brstart && row < brend, PETSC_COMM_SELF, PETSC_ERR_SUP, "Only local rows"); 13125f80ce2aSJacob Faibussowitsch PetscCheck(!mat->getrowactive, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Already active"); 1313acdf5bf4SSatish Balay mat->getrowactive = PETSC_TRUE; 1314acdf5bf4SSatish Balay 1315acdf5bf4SSatish Balay if (!mat->rowvalues && (idx || v)) { 1316acdf5bf4SSatish Balay /* 1317acdf5bf4SSatish Balay allocate enough space to hold information from the longest row. 1318acdf5bf4SSatish Balay */ 1319acdf5bf4SSatish Balay Mat_SeqBAIJ *Aa = (Mat_SeqBAIJ *)mat->A->data, *Ba = (Mat_SeqBAIJ *)mat->B->data; 1320b24ad042SBarry Smith PetscInt max = 1, mbs = mat->mbs, tmp; 1321bd16c2feSSatish Balay for (i = 0; i < mbs; i++) { 1322acdf5bf4SSatish Balay tmp = Aa->i[i + 1] - Aa->i[i] + Ba->i[i + 1] - Ba->i[i]; 132326fbe8dcSKarl Rupp if (max < tmp) max = tmp; 1324acdf5bf4SSatish Balay } 13259566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(max * bs2, &mat->rowvalues, max * bs2, &mat->rowindices)); 1326acdf5bf4SSatish Balay } 1327d9d09a02SSatish Balay lrow = row - brstart; 1328acdf5bf4SSatish Balay 13299371c9d4SSatish Balay pvA = &vworkA; 13309371c9d4SSatish Balay pcA = &cworkA; 13319371c9d4SSatish Balay pvB = &vworkB; 13329371c9d4SSatish Balay pcB = &cworkB; 13339371c9d4SSatish Balay if (!v) { 13349371c9d4SSatish Balay pvA = NULL; 13359371c9d4SSatish Balay pvB = NULL; 13369371c9d4SSatish Balay } 13379371c9d4SSatish Balay if (!idx) { 13389371c9d4SSatish Balay pcA = NULL; 13399371c9d4SSatish Balay if (!v) pcB = NULL; 13409371c9d4SSatish Balay } 13419566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->getrow)(mat->A, lrow, &nzA, pcA, pvA)); 13429566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->getrow)(mat->B, lrow, &nzB, pcB, pvB)); 1343acdf5bf4SSatish Balay nztot = nzA + nzB; 1344acdf5bf4SSatish Balay 1345acdf5bf4SSatish Balay cmap = mat->garray; 1346acdf5bf4SSatish Balay if (v || idx) { 1347acdf5bf4SSatish Balay if (nztot) { 1348acdf5bf4SSatish Balay /* Sort by increasing column numbers, assuming A and B already sorted */ 1349b24ad042SBarry Smith PetscInt imark = -1; 1350acdf5bf4SSatish Balay if (v) { 1351acdf5bf4SSatish Balay *v = v_p = mat->rowvalues; 1352acdf5bf4SSatish Balay for (i = 0; i < nzB; i++) { 1353d9d09a02SSatish Balay if (cmap[cworkB[i] / bs] < cstart) v_p[i] = vworkB[i]; 1354acdf5bf4SSatish Balay else break; 1355acdf5bf4SSatish Balay } 1356acdf5bf4SSatish Balay imark = i; 1357acdf5bf4SSatish Balay for (i = 0; i < nzA; i++) v_p[imark + i] = vworkA[i]; 1358acdf5bf4SSatish Balay for (i = imark; i < nzB; i++) v_p[nzA + i] = vworkB[i]; 1359acdf5bf4SSatish Balay } 1360acdf5bf4SSatish Balay if (idx) { 1361acdf5bf4SSatish Balay *idx = idx_p = mat->rowindices; 1362acdf5bf4SSatish Balay if (imark > -1) { 1363ad540459SPierre Jolivet for (i = 0; i < imark; i++) idx_p[i] = cmap[cworkB[i] / bs] * bs + cworkB[i] % bs; 1364acdf5bf4SSatish Balay } else { 1365acdf5bf4SSatish Balay for (i = 0; i < nzB; i++) { 136626fbe8dcSKarl Rupp if (cmap[cworkB[i] / bs] < cstart) idx_p[i] = cmap[cworkB[i] / bs] * bs + cworkB[i] % bs; 1367acdf5bf4SSatish Balay else break; 1368acdf5bf4SSatish Balay } 1369acdf5bf4SSatish Balay imark = i; 1370acdf5bf4SSatish Balay } 1371d9d09a02SSatish Balay for (i = 0; i < nzA; i++) idx_p[imark + i] = cstart * bs + cworkA[i]; 1372d9d09a02SSatish Balay for (i = imark; i < nzB; i++) idx_p[nzA + i] = cmap[cworkB[i] / bs] * bs + cworkB[i] % bs; 1373acdf5bf4SSatish Balay } 1374d64ed03dSBarry Smith } else { 1375f4259b30SLisandro Dalcin if (idx) *idx = NULL; 1376f4259b30SLisandro Dalcin if (v) *v = NULL; 1377d212a18eSSatish Balay } 1378acdf5bf4SSatish Balay } 1379acdf5bf4SSatish Balay *nz = nztot; 13809566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->restorerow)(mat->A, lrow, &nzA, pcA, pvA)); 13819566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->restorerow)(mat->B, lrow, &nzB, pcB, pvB)); 13823ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1383acdf5bf4SSatish Balay } 1384acdf5bf4SSatish Balay 1385523895eeSPierre Jolivet static PetscErrorCode MatRestoreRow_MPIBAIJ(Mat mat, PetscInt row, PetscInt *nz, PetscInt **idx, PetscScalar **v) 1386d71ae5a4SJacob Faibussowitsch { 1387acdf5bf4SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 1388d64ed03dSBarry Smith 1389d64ed03dSBarry Smith PetscFunctionBegin; 13905f80ce2aSJacob Faibussowitsch PetscCheck(baij->getrowactive, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "MatGetRow not called"); 1391acdf5bf4SSatish Balay baij->getrowactive = PETSC_FALSE; 13923ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1393acdf5bf4SSatish Balay } 1394acdf5bf4SSatish Balay 139566976f2fSJacob Faibussowitsch static PetscErrorCode MatZeroEntries_MPIBAIJ(Mat A) 1396d71ae5a4SJacob Faibussowitsch { 139758667388SSatish Balay Mat_MPIBAIJ *l = (Mat_MPIBAIJ *)A->data; 1398d64ed03dSBarry Smith 1399d64ed03dSBarry Smith PetscFunctionBegin; 14009566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(l->A)); 14019566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(l->B)); 14023ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 140358667388SSatish Balay } 14040ac07820SSatish Balay 140566976f2fSJacob Faibussowitsch static PetscErrorCode MatGetInfo_MPIBAIJ(Mat matin, MatInfoType flag, MatInfo *info) 1406d71ae5a4SJacob Faibussowitsch { 14074e220ebcSLois Curfman McInnes Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)matin->data; 14084e220ebcSLois Curfman McInnes Mat A = a->A, B = a->B; 14093966268fSBarry Smith PetscLogDouble isend[5], irecv[5]; 14100ac07820SSatish Balay 1411d64ed03dSBarry Smith PetscFunctionBegin; 1412d0f46423SBarry Smith info->block_size = (PetscReal)matin->rmap->bs; 141326fbe8dcSKarl Rupp 14149566063dSJacob Faibussowitsch PetscCall(MatGetInfo(A, MAT_LOCAL, info)); 141526fbe8dcSKarl Rupp 14169371c9d4SSatish Balay isend[0] = info->nz_used; 14179371c9d4SSatish Balay isend[1] = info->nz_allocated; 14189371c9d4SSatish Balay isend[2] = info->nz_unneeded; 14199371c9d4SSatish Balay isend[3] = info->memory; 14209371c9d4SSatish Balay isend[4] = info->mallocs; 142126fbe8dcSKarl Rupp 14229566063dSJacob Faibussowitsch PetscCall(MatGetInfo(B, MAT_LOCAL, info)); 142326fbe8dcSKarl Rupp 14249371c9d4SSatish Balay isend[0] += info->nz_used; 14259371c9d4SSatish Balay isend[1] += info->nz_allocated; 14269371c9d4SSatish Balay isend[2] += info->nz_unneeded; 14279371c9d4SSatish Balay isend[3] += info->memory; 14289371c9d4SSatish Balay isend[4] += info->mallocs; 142926fbe8dcSKarl Rupp 14300ac07820SSatish Balay if (flag == MAT_LOCAL) { 14314e220ebcSLois Curfman McInnes info->nz_used = isend[0]; 14324e220ebcSLois Curfman McInnes info->nz_allocated = isend[1]; 14334e220ebcSLois Curfman McInnes info->nz_unneeded = isend[2]; 14344e220ebcSLois Curfman McInnes info->memory = isend[3]; 14354e220ebcSLois Curfman McInnes info->mallocs = isend[4]; 14360ac07820SSatish Balay } else if (flag == MAT_GLOBAL_MAX) { 1437462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(isend, irecv, 5, MPIU_PETSCLOGDOUBLE, MPI_MAX, PetscObjectComm((PetscObject)matin))); 143826fbe8dcSKarl Rupp 14394e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 14404e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 14414e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 14424e220ebcSLois Curfman McInnes info->memory = irecv[3]; 14434e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 14440ac07820SSatish Balay } else if (flag == MAT_GLOBAL_SUM) { 1445462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(isend, irecv, 5, MPIU_PETSCLOGDOUBLE, MPI_SUM, PetscObjectComm((PetscObject)matin))); 144626fbe8dcSKarl Rupp 14474e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 14484e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 14494e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 14504e220ebcSLois Curfman McInnes info->memory = irecv[3]; 14514e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 145298921bdaSJacob Faibussowitsch } else SETERRQ(PetscObjectComm((PetscObject)matin), PETSC_ERR_ARG_WRONG, "Unknown MatInfoType argument %d", (int)flag); 14534e220ebcSLois Curfman McInnes info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */ 14544e220ebcSLois Curfman McInnes info->fill_ratio_needed = 0; 14554e220ebcSLois Curfman McInnes info->factor_mallocs = 0; 14563ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 14570ac07820SSatish Balay } 14580ac07820SSatish Balay 145966976f2fSJacob Faibussowitsch static PetscErrorCode MatSetOption_MPIBAIJ(Mat A, MatOption op, PetscBool flg) 1460d71ae5a4SJacob Faibussowitsch { 146158667388SSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 146258667388SSatish Balay 1463d64ed03dSBarry Smith PetscFunctionBegin; 146412c028f9SKris Buschelman switch (op) { 1465512a5fc5SBarry Smith case MAT_NEW_NONZERO_LOCATIONS: 146612c028f9SKris Buschelman case MAT_NEW_NONZERO_ALLOCATION_ERR: 146728b2fa4aSMatthew Knepley case MAT_UNUSED_NONZERO_LOCATION_ERR: 1468a9817697SBarry Smith case MAT_KEEP_NONZERO_PATTERN: 146912c028f9SKris Buschelman case MAT_NEW_NONZERO_LOCATION_ERR: 147043674050SBarry Smith MatCheckPreallocated(A, 1); 14719566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->A, op, flg)); 14729566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->B, op, flg)); 147312c028f9SKris Buschelman break; 147412c028f9SKris Buschelman case MAT_ROW_ORIENTED: 147543674050SBarry Smith MatCheckPreallocated(A, 1); 14764e0d8c25SBarry Smith a->roworiented = flg; 147726fbe8dcSKarl Rupp 14789566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->A, op, flg)); 14799566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->B, op, flg)); 148012c028f9SKris Buschelman break; 1481d71ae5a4SJacob Faibussowitsch case MAT_IGNORE_OFF_PROC_ENTRIES: 1482d71ae5a4SJacob Faibussowitsch a->donotstash = flg; 1483d71ae5a4SJacob Faibussowitsch break; 148412c028f9SKris Buschelman case MAT_USE_HASH_TABLE: 14854e0d8c25SBarry Smith a->ht_flag = flg; 1486abf3b562SBarry Smith a->ht_fact = 1.39; 148712c028f9SKris Buschelman break; 148877e54ba9SKris Buschelman case MAT_SYMMETRIC: 148977e54ba9SKris Buschelman case MAT_STRUCTURALLY_SYMMETRIC: 14902188ac68SBarry Smith case MAT_HERMITIAN: 14912188ac68SBarry Smith case MAT_SYMMETRY_ETERNAL: 1492b94d7dedSBarry Smith case MAT_STRUCTURAL_SYMMETRY_ETERNAL: 1493b94d7dedSBarry Smith case MAT_SPD_ETERNAL: 1494b94d7dedSBarry Smith /* if the diagonal matrix is square it inherits some of the properties above */ 14959725ddffSPierre Jolivet if (a->A && A->rmap->n == A->cmap->n) PetscCall(MatSetOption(a->A, op, flg)); 149677e54ba9SKris Buschelman break; 1497d71ae5a4SJacob Faibussowitsch default: 1498888c827cSStefano Zampini break; 1499d64ed03dSBarry Smith } 15003ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 150158667388SSatish Balay } 150258667388SSatish Balay 150366976f2fSJacob Faibussowitsch static PetscErrorCode MatTranspose_MPIBAIJ(Mat A, MatReuse reuse, Mat *matout) 1504d71ae5a4SJacob Faibussowitsch { 15050ac07820SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)A->data; 15060ac07820SSatish Balay Mat_SeqBAIJ *Aloc; 15070ac07820SSatish Balay Mat B; 1508d0f46423SBarry Smith PetscInt M = A->rmap->N, N = A->cmap->N, *ai, *aj, i, *rvals, j, k, col; 1509d0f46423SBarry Smith PetscInt bs = A->rmap->bs, mbs = baij->mbs; 15103eda8832SBarry Smith MatScalar *a; 15110ac07820SSatish Balay 1512d64ed03dSBarry Smith PetscFunctionBegin; 15137fb60732SBarry Smith if (reuse == MAT_REUSE_MATRIX) PetscCall(MatTransposeCheckNonzeroState_Private(A, *matout)); 1514cf37664fSBarry Smith if (reuse == MAT_INITIAL_MATRIX || reuse == MAT_INPLACE_MATRIX) { 15159566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)A), &B)); 15169566063dSJacob Faibussowitsch PetscCall(MatSetSizes(B, A->cmap->n, A->rmap->n, N, M)); 15179566063dSJacob Faibussowitsch PetscCall(MatSetType(B, ((PetscObject)A)->type_name)); 15182e72b8d9SBarry Smith /* Do not know preallocation information, but must set block size */ 15199566063dSJacob Faibussowitsch PetscCall(MatMPIBAIJSetPreallocation(B, A->rmap->bs, PETSC_DECIDE, NULL, PETSC_DECIDE, NULL)); 1520fc4dec0aSBarry Smith } else { 1521fc4dec0aSBarry Smith B = *matout; 1522fc4dec0aSBarry Smith } 15230ac07820SSatish Balay 15240ac07820SSatish Balay /* copy over the A part */ 15250ac07820SSatish Balay Aloc = (Mat_SeqBAIJ *)baij->A->data; 15269371c9d4SSatish Balay ai = Aloc->i; 15279371c9d4SSatish Balay aj = Aloc->j; 15289371c9d4SSatish Balay a = Aloc->a; 15299566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(bs, &rvals)); 15300ac07820SSatish Balay 15310ac07820SSatish Balay for (i = 0; i < mbs; i++) { 1532899cda47SBarry Smith rvals[0] = bs * (baij->rstartbs + i); 153326fbe8dcSKarl Rupp for (j = 1; j < bs; j++) rvals[j] = rvals[j - 1] + 1; 15340ac07820SSatish Balay for (j = ai[i]; j < ai[i + 1]; j++) { 1535899cda47SBarry Smith col = (baij->cstartbs + aj[j]) * bs; 15360ac07820SSatish Balay for (k = 0; k < bs; k++) { 15379566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPIBAIJ(B, 1, &col, bs, rvals, a, INSERT_VALUES)); 153826fbe8dcSKarl Rupp 15399371c9d4SSatish Balay col++; 15409371c9d4SSatish Balay a += bs; 15410ac07820SSatish Balay } 15420ac07820SSatish Balay } 15430ac07820SSatish Balay } 15440ac07820SSatish Balay /* copy over the B part */ 15450ac07820SSatish Balay Aloc = (Mat_SeqBAIJ *)baij->B->data; 15469371c9d4SSatish Balay ai = Aloc->i; 15479371c9d4SSatish Balay aj = Aloc->j; 15489371c9d4SSatish Balay a = Aloc->a; 15490ac07820SSatish Balay for (i = 0; i < mbs; i++) { 1550899cda47SBarry Smith rvals[0] = bs * (baij->rstartbs + i); 155126fbe8dcSKarl Rupp for (j = 1; j < bs; j++) rvals[j] = rvals[j - 1] + 1; 15520ac07820SSatish Balay for (j = ai[i]; j < ai[i + 1]; j++) { 15530ac07820SSatish Balay col = baij->garray[aj[j]] * bs; 15540ac07820SSatish Balay for (k = 0; k < bs; k++) { 15559566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPIBAIJ(B, 1, &col, bs, rvals, a, INSERT_VALUES)); 155626fbe8dcSKarl Rupp col++; 155726fbe8dcSKarl Rupp a += bs; 15580ac07820SSatish Balay } 15590ac07820SSatish Balay } 15600ac07820SSatish Balay } 15619566063dSJacob Faibussowitsch PetscCall(PetscFree(rvals)); 15629566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY)); 15639566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY)); 15640ac07820SSatish Balay 1565cf37664fSBarry Smith if (reuse == MAT_INITIAL_MATRIX || reuse == MAT_REUSE_MATRIX) *matout = B; 156648a46eb9SPierre Jolivet else PetscCall(MatHeaderMerge(A, &B)); 15673ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 15680ac07820SSatish Balay } 15690e95ebc0SSatish Balay 157066976f2fSJacob Faibussowitsch static PetscErrorCode MatDiagonalScale_MPIBAIJ(Mat mat, Vec ll, Vec rr) 1571d71ae5a4SJacob Faibussowitsch { 157236c4a09eSSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 157336c4a09eSSatish Balay Mat a = baij->A, b = baij->B; 1574b24ad042SBarry Smith PetscInt s1, s2, s3; 15750e95ebc0SSatish Balay 1576d64ed03dSBarry Smith PetscFunctionBegin; 15779566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(mat, &s2, &s3)); 157836c4a09eSSatish Balay if (rr) { 15799566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(rr, &s1)); 15805f80ce2aSJacob Faibussowitsch PetscCheck(s1 == s3, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "right vector non-conforming local size"); 158136c4a09eSSatish Balay /* Overlap communication with computation. */ 15829566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(baij->Mvctx, rr, baij->lvec, INSERT_VALUES, SCATTER_FORWARD)); 158336c4a09eSSatish Balay } 15840e95ebc0SSatish Balay if (ll) { 15859566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(ll, &s1)); 15865f80ce2aSJacob Faibussowitsch PetscCheck(s1 == s2, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "left vector non-conforming local size"); 1587dbbe0bcdSBarry Smith PetscUseTypeMethod(b, diagonalscale, ll, NULL); 15880e95ebc0SSatish Balay } 158936c4a09eSSatish Balay /* scale the diagonal block */ 1590dbbe0bcdSBarry Smith PetscUseTypeMethod(a, diagonalscale, ll, rr); 159136c4a09eSSatish Balay 159236c4a09eSSatish Balay if (rr) { 159336c4a09eSSatish Balay /* Do a scatter end and then right scale the off-diagonal block */ 15949566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(baij->Mvctx, rr, baij->lvec, INSERT_VALUES, SCATTER_FORWARD)); 1595dbbe0bcdSBarry Smith PetscUseTypeMethod(b, diagonalscale, NULL, baij->lvec); 159636c4a09eSSatish Balay } 15973ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 15980e95ebc0SSatish Balay } 15990e95ebc0SSatish Balay 160066976f2fSJacob Faibussowitsch static PetscErrorCode MatZeroRows_MPIBAIJ(Mat A, PetscInt N, const PetscInt rows[], PetscScalar diag, Vec x, Vec b) 1601d71ae5a4SJacob Faibussowitsch { 16020ac07820SSatish Balay Mat_MPIBAIJ *l = (Mat_MPIBAIJ *)A->data; 160365a92638SMatthew G. Knepley PetscInt *lrows; 16046e520ac8SStefano Zampini PetscInt r, len; 160594342113SStefano Zampini PetscBool cong; 16060ac07820SSatish Balay 1607d64ed03dSBarry Smith PetscFunctionBegin; 16086e520ac8SStefano Zampini /* get locally owned rows */ 16099566063dSJacob Faibussowitsch PetscCall(MatZeroRowsMapLocal_Private(A, N, rows, &len, &lrows)); 1610dd8e379bSPierre Jolivet /* fix right-hand side if needed */ 161197b48c8fSBarry Smith if (x && b) { 161265a92638SMatthew G. Knepley const PetscScalar *xx; 161365a92638SMatthew G. Knepley PetscScalar *bb; 161465a92638SMatthew G. Knepley 16159566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(x, &xx)); 16169566063dSJacob Faibussowitsch PetscCall(VecGetArray(b, &bb)); 161765a92638SMatthew G. Knepley for (r = 0; r < len; ++r) bb[lrows[r]] = diag * xx[lrows[r]]; 16189566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(x, &xx)); 16199566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(b, &bb)); 162097b48c8fSBarry Smith } 162197b48c8fSBarry Smith 16220ac07820SSatish Balay /* actually zap the local rows */ 162372dacd9aSBarry Smith /* 162472dacd9aSBarry Smith Zero the required rows. If the "diagonal block" of the matrix 1625a8c7a070SBarry Smith is square and the user wishes to set the diagonal we use separate 162672dacd9aSBarry Smith code so that MatSetValues() is not called for each diagonal allocating 162772dacd9aSBarry Smith new memory, thus calling lots of mallocs and slowing things down. 162872dacd9aSBarry Smith 162972dacd9aSBarry Smith */ 16309c957beeSSatish Balay /* must zero l->B before l->A because the (diag) case below may put values into l->B*/ 16319566063dSJacob Faibussowitsch PetscCall(MatZeroRows_SeqBAIJ(l->B, len, lrows, 0.0, NULL, NULL)); 16329566063dSJacob Faibussowitsch PetscCall(MatHasCongruentLayouts(A, &cong)); 163394342113SStefano Zampini if ((diag != 0.0) && cong) { 16349566063dSJacob Faibussowitsch PetscCall(MatZeroRows_SeqBAIJ(l->A, len, lrows, diag, NULL, NULL)); 1635f4df32b1SMatthew Knepley } else if (diag != 0.0) { 16369566063dSJacob Faibussowitsch PetscCall(MatZeroRows_SeqBAIJ(l->A, len, lrows, 0.0, NULL, NULL)); 163700045ab3SPierre Jolivet PetscCheck(!((Mat_SeqBAIJ *)l->A->data)->nonew, PETSC_COMM_SELF, PETSC_ERR_SUP, "MatZeroRows() on rectangular matrices cannot be used with the Mat options MAT_NEW_NONZERO_LOCATIONS, MAT_NEW_NONZERO_LOCATION_ERR, and MAT_NEW_NONZERO_ALLOCATION_ERR"); 163865a92638SMatthew G. Knepley for (r = 0; r < len; ++r) { 163965a92638SMatthew G. Knepley const PetscInt row = lrows[r] + A->rmap->rstart; 16409566063dSJacob Faibussowitsch PetscCall(MatSetValues(A, 1, &row, 1, &row, &diag, INSERT_VALUES)); 1641a07cd24cSSatish Balay } 16429566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(A, MAT_FINAL_ASSEMBLY)); 16439566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(A, MAT_FINAL_ASSEMBLY)); 16449c957beeSSatish Balay } else { 16459566063dSJacob Faibussowitsch PetscCall(MatZeroRows_SeqBAIJ(l->A, len, lrows, 0.0, NULL, NULL)); 1646a07cd24cSSatish Balay } 16479566063dSJacob Faibussowitsch PetscCall(PetscFree(lrows)); 16484f9cfa9eSBarry Smith 16494f9cfa9eSBarry Smith /* only change matrix nonzero state if pattern was allowed to be changed */ 1650f4f49eeaSPierre Jolivet if (!((Mat_SeqBAIJ *)l->A->data)->keepnonzeropattern || !((Mat_SeqBAIJ *)l->A->data)->nonew) { 1651e56f5c9eSBarry Smith PetscObjectState state = l->A->nonzerostate + l->B->nonzerostate; 1652462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&state, &A->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)A))); 1653e56f5c9eSBarry Smith } 16543ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 16550ac07820SSatish Balay } 165672dacd9aSBarry Smith 165766976f2fSJacob Faibussowitsch static PetscErrorCode MatZeroRowsColumns_MPIBAIJ(Mat A, PetscInt N, const PetscInt rows[], PetscScalar diag, Vec x, Vec b) 1658d71ae5a4SJacob Faibussowitsch { 16596f0a72daSMatthew G. Knepley Mat_MPIBAIJ *l = (Mat_MPIBAIJ *)A->data; 16606497c311SBarry Smith PetscMPIInt n, p = 0; 1661131c27b5Sprj- PetscInt i, j, k, r, len = 0, row, col, count; 16626f0a72daSMatthew G. Knepley PetscInt *lrows, *owners = A->rmap->range; 16636f0a72daSMatthew G. Knepley PetscSFNode *rrows; 16646f0a72daSMatthew G. Knepley PetscSF sf; 16656f0a72daSMatthew G. Knepley const PetscScalar *xx; 16666f0a72daSMatthew G. Knepley PetscScalar *bb, *mask; 16676f0a72daSMatthew G. Knepley Vec xmask, lmask; 16686f0a72daSMatthew G. Knepley Mat_SeqBAIJ *baij = (Mat_SeqBAIJ *)l->B->data; 16696f0a72daSMatthew G. Knepley PetscInt bs = A->rmap->bs, bs2 = baij->bs2; 16706f0a72daSMatthew G. Knepley PetscScalar *aa; 16716f0a72daSMatthew G. Knepley 16726f0a72daSMatthew G. Knepley PetscFunctionBegin; 16736497c311SBarry Smith PetscCall(PetscMPIIntCast(A->rmap->n, &n)); 16746f0a72daSMatthew G. Knepley /* Create SF where leaves are input rows and roots are owned rows */ 16759566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(n, &lrows)); 16766f0a72daSMatthew G. Knepley for (r = 0; r < n; ++r) lrows[r] = -1; 16779566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(N, &rrows)); 16786f0a72daSMatthew G. Knepley for (r = 0; r < N; ++r) { 16796f0a72daSMatthew G. Knepley const PetscInt idx = rows[r]; 16805f80ce2aSJacob Faibussowitsch PetscCheck(idx >= 0 && A->rmap->N > idx, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row %" PetscInt_FMT " out of range [0,%" PetscInt_FMT ")", idx, A->rmap->N); 16815ba17502SJed Brown if (idx < owners[p] || owners[p + 1] <= idx) { /* short-circuit the search if the last p owns this row too */ 16829566063dSJacob Faibussowitsch PetscCall(PetscLayoutFindOwner(A->rmap, idx, &p)); 16835ba17502SJed Brown } 16846f0a72daSMatthew G. Knepley rrows[r].rank = p; 16856f0a72daSMatthew G. Knepley rrows[r].index = rows[r] - owners[p]; 16866f0a72daSMatthew G. Knepley } 16879566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)A), &sf)); 16889566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(sf, n, N, NULL, PETSC_OWN_POINTER, rrows, PETSC_OWN_POINTER)); 16896f0a72daSMatthew G. Knepley /* Collect flags for rows to be zeroed */ 16909566063dSJacob Faibussowitsch PetscCall(PetscSFReduceBegin(sf, MPIU_INT, (PetscInt *)rows, lrows, MPI_LOR)); 16919566063dSJacob Faibussowitsch PetscCall(PetscSFReduceEnd(sf, MPIU_INT, (PetscInt *)rows, lrows, MPI_LOR)); 16929566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&sf)); 16936f0a72daSMatthew G. Knepley /* Compress and put in row numbers */ 16949371c9d4SSatish Balay for (r = 0; r < n; ++r) 16959371c9d4SSatish Balay if (lrows[r] >= 0) lrows[len++] = r; 16966f0a72daSMatthew G. Knepley /* zero diagonal part of matrix */ 16979566063dSJacob Faibussowitsch PetscCall(MatZeroRowsColumns(l->A, len, lrows, diag, x, b)); 16984cf0e950SBarry Smith /* handle off-diagonal part of matrix */ 16999566063dSJacob Faibussowitsch PetscCall(MatCreateVecs(A, &xmask, NULL)); 17009566063dSJacob Faibussowitsch PetscCall(VecDuplicate(l->lvec, &lmask)); 17019566063dSJacob Faibussowitsch PetscCall(VecGetArray(xmask, &bb)); 17026f0a72daSMatthew G. Knepley for (i = 0; i < len; i++) bb[lrows[i]] = 1; 17039566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(xmask, &bb)); 17049566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(l->Mvctx, xmask, lmask, ADD_VALUES, SCATTER_FORWARD)); 17059566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(l->Mvctx, xmask, lmask, ADD_VALUES, SCATTER_FORWARD)); 17069566063dSJacob Faibussowitsch PetscCall(VecDestroy(&xmask)); 17076f0a72daSMatthew G. Knepley if (x) { 17089566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(l->Mvctx, x, l->lvec, INSERT_VALUES, SCATTER_FORWARD)); 17099566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(l->Mvctx, x, l->lvec, INSERT_VALUES, SCATTER_FORWARD)); 17109566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(l->lvec, &xx)); 17119566063dSJacob Faibussowitsch PetscCall(VecGetArray(b, &bb)); 17126f0a72daSMatthew G. Knepley } 17139566063dSJacob Faibussowitsch PetscCall(VecGetArray(lmask, &mask)); 17144cf0e950SBarry Smith /* remove zeroed rows of off-diagonal matrix */ 17156f0a72daSMatthew G. Knepley for (i = 0; i < len; ++i) { 17166f0a72daSMatthew G. Knepley row = lrows[i]; 17176f0a72daSMatthew G. Knepley count = (baij->i[row / bs + 1] - baij->i[row / bs]) * bs; 1718835f2295SStefano Zampini aa = baij->a + baij->i[row / bs] * bs2 + (row % bs); 17196f0a72daSMatthew G. Knepley for (k = 0; k < count; ++k) { 17206f0a72daSMatthew G. Knepley aa[0] = 0.0; 17216f0a72daSMatthew G. Knepley aa += bs; 17226f0a72daSMatthew G. Knepley } 17236f0a72daSMatthew G. Knepley } 17246f0a72daSMatthew G. Knepley /* loop over all elements of off process part of matrix zeroing removed columns*/ 17256f0a72daSMatthew G. Knepley for (i = 0; i < l->B->rmap->N; ++i) { 17266f0a72daSMatthew G. Knepley row = i / bs; 17276f0a72daSMatthew G. Knepley for (j = baij->i[row]; j < baij->i[row + 1]; ++j) { 17286f0a72daSMatthew G. Knepley for (k = 0; k < bs; ++k) { 17296f0a72daSMatthew G. Knepley col = bs * baij->j[j] + k; 17306f0a72daSMatthew G. Knepley if (PetscAbsScalar(mask[col])) { 1731835f2295SStefano Zampini aa = baij->a + j * bs2 + (i % bs) + bs * k; 173289ae1891SBarry Smith if (x) bb[i] -= aa[0] * xx[col]; 17336f0a72daSMatthew G. Knepley aa[0] = 0.0; 17346f0a72daSMatthew G. Knepley } 17356f0a72daSMatthew G. Knepley } 17366f0a72daSMatthew G. Knepley } 17376f0a72daSMatthew G. Knepley } 17386f0a72daSMatthew G. Knepley if (x) { 17399566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(b, &bb)); 17409566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(l->lvec, &xx)); 17416f0a72daSMatthew G. Knepley } 17429566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(lmask, &mask)); 17439566063dSJacob Faibussowitsch PetscCall(VecDestroy(&lmask)); 17449566063dSJacob Faibussowitsch PetscCall(PetscFree(lrows)); 17454f9cfa9eSBarry Smith 17464f9cfa9eSBarry Smith /* only change matrix nonzero state if pattern was allowed to be changed */ 1747f4f49eeaSPierre Jolivet if (!((Mat_SeqBAIJ *)l->A->data)->nonew) { 17484f9cfa9eSBarry Smith PetscObjectState state = l->A->nonzerostate + l->B->nonzerostate; 1749462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&state, &A->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)A))); 17504f9cfa9eSBarry Smith } 17513ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 17526f0a72daSMatthew G. Knepley } 17536f0a72daSMatthew G. Knepley 175466976f2fSJacob Faibussowitsch static PetscErrorCode MatSetUnfactored_MPIBAIJ(Mat A) 1755d71ae5a4SJacob Faibussowitsch { 1756bb5a7306SBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 1757d64ed03dSBarry Smith 1758d64ed03dSBarry Smith PetscFunctionBegin; 17599566063dSJacob Faibussowitsch PetscCall(MatSetUnfactored(a->A)); 17603ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1761bb5a7306SBarry Smith } 1762bb5a7306SBarry Smith 17636849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIBAIJ(Mat, MatDuplicateOption, Mat *); 17640ac07820SSatish Balay 176566976f2fSJacob Faibussowitsch static PetscErrorCode MatEqual_MPIBAIJ(Mat A, Mat B, PetscBool *flag) 1766d71ae5a4SJacob Faibussowitsch { 17677fc3c18eSBarry Smith Mat_MPIBAIJ *matB = (Mat_MPIBAIJ *)B->data, *matA = (Mat_MPIBAIJ *)A->data; 17687fc3c18eSBarry Smith Mat a, b, c, d; 1769ace3abfcSBarry Smith PetscBool flg; 17707fc3c18eSBarry Smith 17717fc3c18eSBarry Smith PetscFunctionBegin; 17729371c9d4SSatish Balay a = matA->A; 17739371c9d4SSatish Balay b = matA->B; 17749371c9d4SSatish Balay c = matB->A; 17759371c9d4SSatish Balay d = matB->B; 17767fc3c18eSBarry Smith 17779566063dSJacob Faibussowitsch PetscCall(MatEqual(a, c, &flg)); 177848a46eb9SPierre Jolivet if (flg) PetscCall(MatEqual(b, d, &flg)); 1779462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&flg, flag, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)A))); 17803ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 17817fc3c18eSBarry Smith } 17827fc3c18eSBarry Smith 178366976f2fSJacob Faibussowitsch static PetscErrorCode MatCopy_MPIBAIJ(Mat A, Mat B, MatStructure str) 1784d71ae5a4SJacob Faibussowitsch { 17853c896bc6SHong Zhang Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 17863c896bc6SHong Zhang Mat_MPIBAIJ *b = (Mat_MPIBAIJ *)B->data; 17873c896bc6SHong Zhang 17883c896bc6SHong Zhang PetscFunctionBegin; 17893c896bc6SHong Zhang /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */ 17903c896bc6SHong Zhang if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) { 17919566063dSJacob Faibussowitsch PetscCall(MatCopy_Basic(A, B, str)); 17923c896bc6SHong Zhang } else { 17939566063dSJacob Faibussowitsch PetscCall(MatCopy(a->A, b->A, str)); 17949566063dSJacob Faibussowitsch PetscCall(MatCopy(a->B, b->B, str)); 17953c896bc6SHong Zhang } 17969566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)B)); 17973ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 17983c896bc6SHong Zhang } 1799273d9f13SBarry Smith 1800d71ae5a4SJacob Faibussowitsch PetscErrorCode MatAXPYGetPreallocation_MPIBAIJ(Mat Y, const PetscInt *yltog, Mat X, const PetscInt *xltog, PetscInt *nnz) 1801d71ae5a4SJacob Faibussowitsch { 1802001ddc4fSHong Zhang PetscInt bs = Y->rmap->bs, m = Y->rmap->N / bs; 18034de5dceeSHong Zhang Mat_SeqBAIJ *x = (Mat_SeqBAIJ *)X->data; 18044de5dceeSHong Zhang Mat_SeqBAIJ *y = (Mat_SeqBAIJ *)Y->data; 18054de5dceeSHong Zhang 18064de5dceeSHong Zhang PetscFunctionBegin; 18079566063dSJacob Faibussowitsch PetscCall(MatAXPYGetPreallocation_MPIX_private(m, x->i, x->j, xltog, y->i, y->j, yltog, nnz)); 18083ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 18094de5dceeSHong Zhang } 18104de5dceeSHong Zhang 181166976f2fSJacob Faibussowitsch static PetscErrorCode MatAXPY_MPIBAIJ(Mat Y, PetscScalar a, Mat X, MatStructure str) 1812d71ae5a4SJacob Faibussowitsch { 18134fe895cdSHong Zhang Mat_MPIBAIJ *xx = (Mat_MPIBAIJ *)X->data, *yy = (Mat_MPIBAIJ *)Y->data; 18144fe895cdSHong Zhang PetscBLASInt bnz, one = 1; 18154fe895cdSHong Zhang Mat_SeqBAIJ *x, *y; 1816b31f67cfSBarry Smith PetscInt bs2 = Y->rmap->bs * Y->rmap->bs; 18174fe895cdSHong Zhang 18184fe895cdSHong Zhang PetscFunctionBegin; 18194fe895cdSHong Zhang if (str == SAME_NONZERO_PATTERN) { 18204fe895cdSHong Zhang PetscScalar alpha = a; 18214fe895cdSHong Zhang x = (Mat_SeqBAIJ *)xx->A->data; 18224fe895cdSHong Zhang y = (Mat_SeqBAIJ *)yy->A->data; 18239566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(x->nz * bs2, &bnz)); 1824792fecdfSBarry Smith PetscCallBLAS("BLASaxpy", BLASaxpy_(&bnz, &alpha, x->a, &one, y->a, &one)); 18254fe895cdSHong Zhang x = (Mat_SeqBAIJ *)xx->B->data; 18264fe895cdSHong Zhang y = (Mat_SeqBAIJ *)yy->B->data; 18279566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(x->nz * bs2, &bnz)); 1828792fecdfSBarry Smith PetscCallBLAS("BLASaxpy", BLASaxpy_(&bnz, &alpha, x->a, &one, y->a, &one)); 18299566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)Y)); 1830ab784542SHong Zhang } else if (str == SUBSET_NONZERO_PATTERN) { /* nonzeros of X is a subset of Y's */ 18319566063dSJacob Faibussowitsch PetscCall(MatAXPY_Basic(Y, a, X, str)); 18324fe895cdSHong Zhang } else { 18334de5dceeSHong Zhang Mat B; 18344de5dceeSHong Zhang PetscInt *nnz_d, *nnz_o, bs = Y->rmap->bs; 18359566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(yy->A->rmap->N, &nnz_d)); 18369566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(yy->B->rmap->N, &nnz_o)); 18379566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)Y), &B)); 18389566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)B, ((PetscObject)Y)->name)); 18399566063dSJacob Faibussowitsch PetscCall(MatSetSizes(B, Y->rmap->n, Y->cmap->n, Y->rmap->N, Y->cmap->N)); 18409566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizesFromMats(B, Y, Y)); 18419566063dSJacob Faibussowitsch PetscCall(MatSetType(B, MATMPIBAIJ)); 18429566063dSJacob Faibussowitsch PetscCall(MatAXPYGetPreallocation_SeqBAIJ(yy->A, xx->A, nnz_d)); 18439566063dSJacob Faibussowitsch PetscCall(MatAXPYGetPreallocation_MPIBAIJ(yy->B, yy->garray, xx->B, xx->garray, nnz_o)); 18449566063dSJacob Faibussowitsch PetscCall(MatMPIBAIJSetPreallocation(B, bs, 0, nnz_d, 0, nnz_o)); 18454de5dceeSHong Zhang /* MatAXPY_BasicWithPreallocation() for BAIJ matrix is much slower than AIJ, even for bs=1 ! */ 18469566063dSJacob Faibussowitsch PetscCall(MatAXPY_BasicWithPreallocation(B, Y, a, X, str)); 18479566063dSJacob Faibussowitsch PetscCall(MatHeaderMerge(Y, &B)); 18489566063dSJacob Faibussowitsch PetscCall(PetscFree(nnz_d)); 18499566063dSJacob Faibussowitsch PetscCall(PetscFree(nnz_o)); 18504fe895cdSHong Zhang } 18513ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 18524fe895cdSHong Zhang } 18534fe895cdSHong Zhang 185466976f2fSJacob Faibussowitsch static PetscErrorCode MatConjugate_MPIBAIJ(Mat mat) 1855d71ae5a4SJacob Faibussowitsch { 18565f80ce2aSJacob Faibussowitsch PetscFunctionBegin; 18575f80ce2aSJacob Faibussowitsch if (PetscDefined(USE_COMPLEX)) { 18582726fb6dSPierre Jolivet Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)mat->data; 18592726fb6dSPierre Jolivet 18609566063dSJacob Faibussowitsch PetscCall(MatConjugate_SeqBAIJ(a->A)); 18619566063dSJacob Faibussowitsch PetscCall(MatConjugate_SeqBAIJ(a->B)); 18625f80ce2aSJacob Faibussowitsch } 18633ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 18642726fb6dSPierre Jolivet } 18652726fb6dSPierre Jolivet 186666976f2fSJacob Faibussowitsch static PetscErrorCode MatRealPart_MPIBAIJ(Mat A) 1867d71ae5a4SJacob Faibussowitsch { 186899cafbc1SBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 186999cafbc1SBarry Smith 187099cafbc1SBarry Smith PetscFunctionBegin; 18719566063dSJacob Faibussowitsch PetscCall(MatRealPart(a->A)); 18729566063dSJacob Faibussowitsch PetscCall(MatRealPart(a->B)); 18733ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 187499cafbc1SBarry Smith } 187599cafbc1SBarry Smith 187666976f2fSJacob Faibussowitsch static PetscErrorCode MatImaginaryPart_MPIBAIJ(Mat A) 1877d71ae5a4SJacob Faibussowitsch { 187899cafbc1SBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 187999cafbc1SBarry Smith 188099cafbc1SBarry Smith PetscFunctionBegin; 18819566063dSJacob Faibussowitsch PetscCall(MatImaginaryPart(a->A)); 18829566063dSJacob Faibussowitsch PetscCall(MatImaginaryPart(a->B)); 18833ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 188499cafbc1SBarry Smith } 188599cafbc1SBarry Smith 188666976f2fSJacob Faibussowitsch static PetscErrorCode MatCreateSubMatrix_MPIBAIJ(Mat mat, IS isrow, IS iscol, MatReuse call, Mat *newmat) 1887d71ae5a4SJacob Faibussowitsch { 18884aa3045dSJed Brown IS iscol_local; 18894aa3045dSJed Brown PetscInt csize; 18904aa3045dSJed Brown 18914aa3045dSJed Brown PetscFunctionBegin; 18929566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol, &csize)); 1893b79d0421SJed Brown if (call == MAT_REUSE_MATRIX) { 18949566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*newmat, "ISAllGather", (PetscObject *)&iscol_local)); 18955f80ce2aSJacob Faibussowitsch PetscCheck(iscol_local, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Submatrix passed in was not used before, cannot reuse"); 1896b79d0421SJed Brown } else { 18979566063dSJacob Faibussowitsch PetscCall(ISAllGather(iscol, &iscol_local)); 1898b79d0421SJed Brown } 1899fdfbdca6SPierre Jolivet PetscCall(MatCreateSubMatrix_MPIBAIJ_Private(mat, isrow, iscol_local, csize, call, newmat, PETSC_FALSE)); 1900b79d0421SJed Brown if (call == MAT_INITIAL_MATRIX) { 19019566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)*newmat, "ISAllGather", (PetscObject)iscol_local)); 19029566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscol_local)); 1903b79d0421SJed Brown } 19043ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 19054aa3045dSJed Brown } 190617df9f7cSHong Zhang 190782094794SBarry Smith /* 190882094794SBarry Smith Not great since it makes two copies of the submatrix, first an SeqBAIJ 190982094794SBarry Smith in local and then by concatenating the local matrices the end result. 19107dae84e0SHong Zhang Writing it directly would be much like MatCreateSubMatrices_MPIBAIJ(). 19118f46ffcaSHong Zhang This routine is used for BAIJ and SBAIJ matrices (unfortunate dependency). 191282094794SBarry Smith */ 1913fdfbdca6SPierre Jolivet PetscErrorCode MatCreateSubMatrix_MPIBAIJ_Private(Mat mat, IS isrow, IS iscol, PetscInt csize, MatReuse call, Mat *newmat, PetscBool sym) 1914d71ae5a4SJacob Faibussowitsch { 191582094794SBarry Smith PetscMPIInt rank, size; 191682094794SBarry Smith PetscInt i, m, n, rstart, row, rend, nz, *cwork, j, bs; 1917c9ffca76SHong Zhang PetscInt *ii, *jj, nlocal, *dlens, *olens, dlen, olen, jend, mglobal; 191829dcf524SDmitry Karpeev Mat M, Mreuse; 191982094794SBarry Smith MatScalar *vwork, *aa; 1920ce94432eSBarry Smith MPI_Comm comm; 192129dcf524SDmitry Karpeev IS isrow_new, iscol_new; 192282094794SBarry Smith Mat_SeqBAIJ *aij; 192382094794SBarry Smith 192482094794SBarry Smith PetscFunctionBegin; 19259566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)mat, &comm)); 19269566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 19279566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 192829dcf524SDmitry Karpeev /* The compression and expansion should be avoided. Doesn't point 192929dcf524SDmitry Karpeev out errors, might change the indices, hence buggey */ 19309566063dSJacob Faibussowitsch PetscCall(ISCompressIndicesGeneral(mat->rmap->N, mat->rmap->n, mat->rmap->bs, 1, &isrow, &isrow_new)); 1931864bd19bSPierre Jolivet if (isrow == iscol) { 1932864bd19bSPierre Jolivet iscol_new = isrow_new; 1933864bd19bSPierre Jolivet PetscCall(PetscObjectReference((PetscObject)iscol_new)); 1934864bd19bSPierre Jolivet } else PetscCall(ISCompressIndicesGeneral(mat->cmap->N, mat->cmap->n, mat->cmap->bs, 1, &iscol, &iscol_new)); 193582094794SBarry Smith 193682094794SBarry Smith if (call == MAT_REUSE_MATRIX) { 19379566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*newmat, "SubMatrix", (PetscObject *)&Mreuse)); 19385f80ce2aSJacob Faibussowitsch PetscCheck(Mreuse, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Submatrix passed in was not used before, cannot reuse"); 1939fdfbdca6SPierre Jolivet PetscCall(MatCreateSubMatrices_MPIBAIJ_local(mat, 1, &isrow_new, &iscol_new, MAT_REUSE_MATRIX, &Mreuse, sym)); 194082094794SBarry Smith } else { 1941fdfbdca6SPierre Jolivet PetscCall(MatCreateSubMatrices_MPIBAIJ_local(mat, 1, &isrow_new, &iscol_new, MAT_INITIAL_MATRIX, &Mreuse, sym)); 194282094794SBarry Smith } 19439566063dSJacob Faibussowitsch PetscCall(ISDestroy(&isrow_new)); 19449566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscol_new)); 194582094794SBarry Smith /* 194682094794SBarry Smith m - number of local rows 194782094794SBarry Smith n - number of columns (same on all processors) 194882094794SBarry Smith rstart - first row in new global matrix generated 194982094794SBarry Smith */ 19509566063dSJacob Faibussowitsch PetscCall(MatGetBlockSize(mat, &bs)); 19519566063dSJacob Faibussowitsch PetscCall(MatGetSize(Mreuse, &m, &n)); 195282094794SBarry Smith m = m / bs; 195382094794SBarry Smith n = n / bs; 195482094794SBarry Smith 195582094794SBarry Smith if (call == MAT_INITIAL_MATRIX) { 195657508eceSPierre Jolivet aij = (Mat_SeqBAIJ *)Mreuse->data; 195782094794SBarry Smith ii = aij->i; 195882094794SBarry Smith jj = aij->j; 195982094794SBarry Smith 196082094794SBarry Smith /* 196182094794SBarry Smith Determine the number of non-zeros in the diagonal and off-diagonal 196282094794SBarry Smith portions of the matrix in order to do correct preallocation 196382094794SBarry Smith */ 196482094794SBarry Smith 196582094794SBarry Smith /* first get start and end of "diagonal" columns */ 196682094794SBarry Smith if (csize == PETSC_DECIDE) { 19679566063dSJacob Faibussowitsch PetscCall(ISGetSize(isrow, &mglobal)); 196882094794SBarry Smith if (mglobal == n * bs) { /* square matrix */ 196982094794SBarry Smith nlocal = m; 197082094794SBarry Smith } else { 197182094794SBarry Smith nlocal = n / size + ((n % size) > rank); 197282094794SBarry Smith } 197382094794SBarry Smith } else { 197482094794SBarry Smith nlocal = csize / bs; 197582094794SBarry Smith } 19769566063dSJacob Faibussowitsch PetscCallMPI(MPI_Scan(&nlocal, &rend, 1, MPIU_INT, MPI_SUM, comm)); 197782094794SBarry Smith rstart = rend - nlocal; 1978aed4548fSBarry Smith PetscCheck(rank != size - 1 || rend == n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Local column sizes %" PetscInt_FMT " do not add up to total number of columns %" PetscInt_FMT, rend, n); 197982094794SBarry Smith 198082094794SBarry Smith /* next, compute all the lengths */ 19819566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(m + 1, &dlens, m + 1, &olens)); 198282094794SBarry Smith for (i = 0; i < m; i++) { 198382094794SBarry Smith jend = ii[i + 1] - ii[i]; 198482094794SBarry Smith olen = 0; 198582094794SBarry Smith dlen = 0; 198682094794SBarry Smith for (j = 0; j < jend; j++) { 198782094794SBarry Smith if (*jj < rstart || *jj >= rend) olen++; 198882094794SBarry Smith else dlen++; 198982094794SBarry Smith jj++; 199082094794SBarry Smith } 199182094794SBarry Smith olens[i] = olen; 199282094794SBarry Smith dlens[i] = dlen; 199382094794SBarry Smith } 19949566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, &M)); 19959566063dSJacob Faibussowitsch PetscCall(MatSetSizes(M, bs * m, bs * nlocal, PETSC_DECIDE, bs * n)); 1996fdfbdca6SPierre Jolivet PetscCall(MatSetType(M, sym ? ((PetscObject)mat)->type_name : MATMPIBAIJ)); 19979566063dSJacob Faibussowitsch PetscCall(MatMPIBAIJSetPreallocation(M, bs, 0, dlens, 0, olens)); 19989566063dSJacob Faibussowitsch PetscCall(MatMPISBAIJSetPreallocation(M, bs, 0, dlens, 0, olens)); 19999566063dSJacob Faibussowitsch PetscCall(PetscFree2(dlens, olens)); 200082094794SBarry Smith } else { 200182094794SBarry Smith PetscInt ml, nl; 200282094794SBarry Smith 200382094794SBarry Smith M = *newmat; 20049566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(M, &ml, &nl)); 20055f80ce2aSJacob Faibussowitsch PetscCheck(ml == m, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Previous matrix must be same size/layout as request"); 20069566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(M)); 200782094794SBarry Smith /* 200882094794SBarry Smith The next two lines are needed so we may call MatSetValues_MPIAIJ() below directly, 200982094794SBarry Smith rather than the slower MatSetValues(). 201082094794SBarry Smith */ 201182094794SBarry Smith M->was_assembled = PETSC_TRUE; 201282094794SBarry Smith M->assembled = PETSC_FALSE; 201382094794SBarry Smith } 20149566063dSJacob Faibussowitsch PetscCall(MatSetOption(M, MAT_ROW_ORIENTED, PETSC_FALSE)); 20159566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(M, &rstart, &rend)); 201657508eceSPierre Jolivet aij = (Mat_SeqBAIJ *)Mreuse->data; 201782094794SBarry Smith ii = aij->i; 201882094794SBarry Smith jj = aij->j; 201982094794SBarry Smith aa = aij->a; 202082094794SBarry Smith for (i = 0; i < m; i++) { 202182094794SBarry Smith row = rstart / bs + i; 202282094794SBarry Smith nz = ii[i + 1] - ii[i]; 20239371c9d4SSatish Balay cwork = jj; 20248e3a54c0SPierre Jolivet jj = PetscSafePointerPlusOffset(jj, nz); 20259371c9d4SSatish Balay vwork = aa; 20268e3a54c0SPierre Jolivet aa = PetscSafePointerPlusOffset(aa, nz * bs * bs); 20279566063dSJacob Faibussowitsch PetscCall(MatSetValuesBlocked_MPIBAIJ(M, 1, &row, nz, cwork, vwork, INSERT_VALUES)); 202882094794SBarry Smith } 202982094794SBarry Smith 20309566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(M, MAT_FINAL_ASSEMBLY)); 20319566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(M, MAT_FINAL_ASSEMBLY)); 203282094794SBarry Smith *newmat = M; 203382094794SBarry Smith 203482094794SBarry Smith /* save submatrix used in processor for next request */ 203582094794SBarry Smith if (call == MAT_INITIAL_MATRIX) { 20369566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)M, "SubMatrix", (PetscObject)Mreuse)); 20379566063dSJacob Faibussowitsch PetscCall(PetscObjectDereference((PetscObject)Mreuse)); 203882094794SBarry Smith } 20393ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 204082094794SBarry Smith } 204182094794SBarry Smith 204266976f2fSJacob Faibussowitsch static PetscErrorCode MatPermute_MPIBAIJ(Mat A, IS rowp, IS colp, Mat *B) 2043d71ae5a4SJacob Faibussowitsch { 204482094794SBarry Smith MPI_Comm comm, pcomm; 2045a0a83eb5SRémi Lacroix PetscInt clocal_size, nrows; 204682094794SBarry Smith const PetscInt *rows; 2047dbf0e21dSBarry Smith PetscMPIInt size; 2048a0a83eb5SRémi Lacroix IS crowp, lcolp; 204982094794SBarry Smith 205082094794SBarry Smith PetscFunctionBegin; 20519566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)A, &comm)); 205282094794SBarry Smith /* make a collective version of 'rowp' */ 20539566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)rowp, &pcomm)); 205482094794SBarry Smith if (pcomm == comm) { 205582094794SBarry Smith crowp = rowp; 205682094794SBarry Smith } else { 20579566063dSJacob Faibussowitsch PetscCall(ISGetSize(rowp, &nrows)); 20589566063dSJacob Faibussowitsch PetscCall(ISGetIndices(rowp, &rows)); 20599566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(comm, nrows, rows, PETSC_COPY_VALUES, &crowp)); 20609566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(rowp, &rows)); 206182094794SBarry Smith } 20629566063dSJacob Faibussowitsch PetscCall(ISSetPermutation(crowp)); 2063a0a83eb5SRémi Lacroix /* make a local version of 'colp' */ 20649566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)colp, &pcomm)); 20659566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(pcomm, &size)); 2066dbf0e21dSBarry Smith if (size == 1) { 206782094794SBarry Smith lcolp = colp; 206882094794SBarry Smith } else { 20699566063dSJacob Faibussowitsch PetscCall(ISAllGather(colp, &lcolp)); 207082094794SBarry Smith } 20719566063dSJacob Faibussowitsch PetscCall(ISSetPermutation(lcolp)); 207275f6568bSJed Brown /* now we just get the submatrix */ 20739566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(A, NULL, &clocal_size)); 2074fdfbdca6SPierre Jolivet PetscCall(MatCreateSubMatrix_MPIBAIJ_Private(A, crowp, lcolp, clocal_size, MAT_INITIAL_MATRIX, B, PETSC_FALSE)); 2075a0a83eb5SRémi Lacroix /* clean up */ 207648a46eb9SPierre Jolivet if (pcomm != comm) PetscCall(ISDestroy(&crowp)); 207748a46eb9SPierre Jolivet if (size > 1) PetscCall(ISDestroy(&lcolp)); 20783ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 207982094794SBarry Smith } 208082094794SBarry Smith 208166976f2fSJacob Faibussowitsch static PetscErrorCode MatGetGhosts_MPIBAIJ(Mat mat, PetscInt *nghosts, const PetscInt *ghosts[]) 2082d71ae5a4SJacob Faibussowitsch { 20838c7482ecSBarry Smith Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 20848c7482ecSBarry Smith Mat_SeqBAIJ *B = (Mat_SeqBAIJ *)baij->B->data; 20858c7482ecSBarry Smith 20868c7482ecSBarry Smith PetscFunctionBegin; 208726fbe8dcSKarl Rupp if (nghosts) *nghosts = B->nbs; 208826fbe8dcSKarl Rupp if (ghosts) *ghosts = baij->garray; 20893ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 20908c7482ecSBarry Smith } 20918c7482ecSBarry Smith 209266976f2fSJacob Faibussowitsch static PetscErrorCode MatGetSeqNonzeroStructure_MPIBAIJ(Mat A, Mat *newmat) 2093d71ae5a4SJacob Faibussowitsch { 2094f6d58c54SBarry Smith Mat B; 2095f6d58c54SBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 2096f6d58c54SBarry Smith Mat_SeqBAIJ *ad = (Mat_SeqBAIJ *)a->A->data, *bd = (Mat_SeqBAIJ *)a->B->data; 2097f6d58c54SBarry Smith Mat_SeqAIJ *b; 2098f4259b30SLisandro Dalcin PetscMPIInt size, rank, *recvcounts = NULL, *displs = NULL; 2099f6d58c54SBarry Smith PetscInt sendcount, i, *rstarts = A->rmap->range, n, cnt, j, bs = A->rmap->bs; 2100f6d58c54SBarry Smith PetscInt m, *garray = a->garray, *lens, *jsendbuf, *a_jsendbuf, *b_jsendbuf; 2101f6d58c54SBarry Smith 2102f6d58c54SBarry Smith PetscFunctionBegin; 21039566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)A), &size)); 21049566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)A), &rank)); 2105f6d58c54SBarry Smith 21062ef1f0ffSBarry Smith /* Tell every processor the number of nonzeros per row */ 21079566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(A->rmap->N / bs, &lens)); 2108ad540459SPierre Jolivet for (i = A->rmap->rstart / bs; i < A->rmap->rend / bs; i++) lens[i] = ad->i[i - A->rmap->rstart / bs + 1] - ad->i[i - A->rmap->rstart / bs] + bd->i[i - A->rmap->rstart / bs + 1] - bd->i[i - A->rmap->rstart / bs]; 21099566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(2 * size, &recvcounts)); 2110f6d58c54SBarry Smith displs = recvcounts + size; 2111f6d58c54SBarry Smith for (i = 0; i < size; i++) { 21126497c311SBarry Smith PetscCall(PetscMPIIntCast(A->rmap->range[i + 1] / bs - A->rmap->range[i] / bs, &recvcounts[i])); 21136497c311SBarry Smith PetscCall(PetscMPIIntCast(A->rmap->range[i] / bs, &displs[i])); 2114f6d58c54SBarry Smith } 21159566063dSJacob Faibussowitsch PetscCallMPI(MPI_Allgatherv(MPI_IN_PLACE, 0, MPI_DATATYPE_NULL, lens, recvcounts, displs, MPIU_INT, PetscObjectComm((PetscObject)A))); 21162ef1f0ffSBarry Smith /* Create the sequential matrix of the same type as the local block diagonal */ 21179566063dSJacob Faibussowitsch PetscCall(MatCreate(PETSC_COMM_SELF, &B)); 21189566063dSJacob Faibussowitsch PetscCall(MatSetSizes(B, A->rmap->N / bs, A->cmap->N / bs, PETSC_DETERMINE, PETSC_DETERMINE)); 21199566063dSJacob Faibussowitsch PetscCall(MatSetType(B, MATSEQAIJ)); 21209566063dSJacob Faibussowitsch PetscCall(MatSeqAIJSetPreallocation(B, 0, lens)); 2121f6d58c54SBarry Smith b = (Mat_SeqAIJ *)B->data; 2122f6d58c54SBarry Smith 21232ef1f0ffSBarry Smith /* Copy my part of matrix column indices over */ 2124f6d58c54SBarry Smith sendcount = ad->nz + bd->nz; 2125f6d58c54SBarry Smith jsendbuf = b->j + b->i[rstarts[rank] / bs]; 2126f6d58c54SBarry Smith a_jsendbuf = ad->j; 2127f6d58c54SBarry Smith b_jsendbuf = bd->j; 2128f6d58c54SBarry Smith n = A->rmap->rend / bs - A->rmap->rstart / bs; 2129f6d58c54SBarry Smith cnt = 0; 2130f6d58c54SBarry Smith for (i = 0; i < n; i++) { 2131f6d58c54SBarry Smith /* put in lower diagonal portion */ 2132f6d58c54SBarry Smith m = bd->i[i + 1] - bd->i[i]; 2133f6d58c54SBarry Smith while (m > 0) { 2134f6d58c54SBarry Smith /* is it above diagonal (in bd (compressed) numbering) */ 2135f6d58c54SBarry Smith if (garray[*b_jsendbuf] > A->rmap->rstart / bs + i) break; 2136f6d58c54SBarry Smith jsendbuf[cnt++] = garray[*b_jsendbuf++]; 2137f6d58c54SBarry Smith m--; 2138f6d58c54SBarry Smith } 2139f6d58c54SBarry Smith 2140f6d58c54SBarry Smith /* put in diagonal portion */ 2141ad540459SPierre Jolivet for (j = ad->i[i]; j < ad->i[i + 1]; j++) jsendbuf[cnt++] = A->rmap->rstart / bs + *a_jsendbuf++; 2142f6d58c54SBarry Smith 2143f6d58c54SBarry Smith /* put in upper diagonal portion */ 2144ad540459SPierre Jolivet while (m-- > 0) jsendbuf[cnt++] = garray[*b_jsendbuf++]; 2145f6d58c54SBarry Smith } 21465f80ce2aSJacob Faibussowitsch PetscCheck(cnt == sendcount, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Corrupted PETSc matrix: nz given %" PetscInt_FMT " actual nz %" PetscInt_FMT, sendcount, cnt); 2147f6d58c54SBarry Smith 21482ef1f0ffSBarry Smith /* Gather all column indices to all processors */ 2149f6d58c54SBarry Smith for (i = 0; i < size; i++) { 2150f6d58c54SBarry Smith recvcounts[i] = 0; 2151ad540459SPierre Jolivet for (j = A->rmap->range[i] / bs; j < A->rmap->range[i + 1] / bs; j++) recvcounts[i] += lens[j]; 2152f6d58c54SBarry Smith } 2153f6d58c54SBarry Smith displs[0] = 0; 2154ad540459SPierre Jolivet for (i = 1; i < size; i++) displs[i] = displs[i - 1] + recvcounts[i - 1]; 21559566063dSJacob Faibussowitsch PetscCallMPI(MPI_Allgatherv(MPI_IN_PLACE, 0, MPI_DATATYPE_NULL, b->j, recvcounts, displs, MPIU_INT, PetscObjectComm((PetscObject)A))); 21565804573cSPierre Jolivet /* Assemble the matrix into usable form (note numerical values not yet set) */ 2157f6d58c54SBarry Smith /* set the b->ilen (length of each row) values */ 21589566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(b->ilen, lens, A->rmap->N / bs)); 2159f6d58c54SBarry Smith /* set the b->i indices */ 2160f6d58c54SBarry Smith b->i[0] = 0; 2161ad540459SPierre Jolivet for (i = 1; i <= A->rmap->N / bs; i++) b->i[i] = b->i[i - 1] + lens[i - 1]; 21629566063dSJacob Faibussowitsch PetscCall(PetscFree(lens)); 21639566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY)); 21649566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY)); 21659566063dSJacob Faibussowitsch PetscCall(PetscFree(recvcounts)); 2166f6d58c54SBarry Smith 2167b94d7dedSBarry Smith PetscCall(MatPropagateSymmetryOptions(A, B)); 2168f6d58c54SBarry Smith *newmat = B; 21693ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2170f6d58c54SBarry Smith } 2171f6d58c54SBarry Smith 217266976f2fSJacob Faibussowitsch static PetscErrorCode MatSOR_MPIBAIJ(Mat matin, Vec bb, PetscReal omega, MatSORType flag, PetscReal fshift, PetscInt its, PetscInt lits, Vec xx) 2173d71ae5a4SJacob Faibussowitsch { 2174b1a666ecSBarry Smith Mat_MPIBAIJ *mat = (Mat_MPIBAIJ *)matin->data; 2175f4259b30SLisandro Dalcin Vec bb1 = NULL; 2176b1a666ecSBarry Smith 2177b1a666ecSBarry Smith PetscFunctionBegin; 2178b1a666ecSBarry Smith if (flag == SOR_APPLY_UPPER) { 21799566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx)); 21803ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2181b1a666ecSBarry Smith } 2182b1a666ecSBarry Smith 218348a46eb9SPierre Jolivet if (its > 1 || ~flag & SOR_ZERO_INITIAL_GUESS) PetscCall(VecDuplicate(bb, &bb1)); 21844e980039SJed Brown 2185b1a666ecSBarry Smith if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP) { 2186b1a666ecSBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 21879566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx)); 2188b1a666ecSBarry Smith its--; 2189b1a666ecSBarry Smith } 2190b1a666ecSBarry Smith 2191b1a666ecSBarry Smith while (its--) { 21929566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 21939566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 2194b1a666ecSBarry Smith 2195b1a666ecSBarry Smith /* update rhs: bb1 = bb - B*x */ 21969566063dSJacob Faibussowitsch PetscCall(VecScale(mat->lvec, -1.0)); 21979566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->multadd)(mat->B, mat->lvec, bb, bb1)); 2198b1a666ecSBarry Smith 2199b1a666ecSBarry Smith /* local sweep */ 22009566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, SOR_SYMMETRIC_SWEEP, fshift, lits, 1, xx)); 2201b1a666ecSBarry Smith } 2202b1a666ecSBarry Smith } else if (flag & SOR_LOCAL_FORWARD_SWEEP) { 2203b1a666ecSBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 22049566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx)); 2205b1a666ecSBarry Smith its--; 2206b1a666ecSBarry Smith } 2207b1a666ecSBarry Smith while (its--) { 22089566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 22099566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 2210b1a666ecSBarry Smith 2211b1a666ecSBarry Smith /* update rhs: bb1 = bb - B*x */ 22129566063dSJacob Faibussowitsch PetscCall(VecScale(mat->lvec, -1.0)); 22139566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->multadd)(mat->B, mat->lvec, bb, bb1)); 2214b1a666ecSBarry Smith 2215b1a666ecSBarry Smith /* local sweep */ 22169566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, SOR_FORWARD_SWEEP, fshift, lits, 1, xx)); 2217b1a666ecSBarry Smith } 2218b1a666ecSBarry Smith } else if (flag & SOR_LOCAL_BACKWARD_SWEEP) { 2219b1a666ecSBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 22209566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx)); 2221b1a666ecSBarry Smith its--; 2222b1a666ecSBarry Smith } 2223b1a666ecSBarry Smith while (its--) { 22249566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 22259566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 2226b1a666ecSBarry Smith 2227b1a666ecSBarry Smith /* update rhs: bb1 = bb - B*x */ 22289566063dSJacob Faibussowitsch PetscCall(VecScale(mat->lvec, -1.0)); 22299566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->multadd)(mat->B, mat->lvec, bb, bb1)); 2230b1a666ecSBarry Smith 2231b1a666ecSBarry Smith /* local sweep */ 22329566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, SOR_BACKWARD_SWEEP, fshift, lits, 1, xx)); 2233b1a666ecSBarry Smith } 2234ce94432eSBarry Smith } else SETERRQ(PetscObjectComm((PetscObject)matin), PETSC_ERR_SUP, "Parallel version of SOR requested not supported"); 2235b1a666ecSBarry Smith 22369566063dSJacob Faibussowitsch PetscCall(VecDestroy(&bb1)); 22373ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2238b1a666ecSBarry Smith } 2239b1a666ecSBarry Smith 224066976f2fSJacob Faibussowitsch static PetscErrorCode MatGetColumnReductions_MPIBAIJ(Mat A, PetscInt type, PetscReal *reductions) 2241d71ae5a4SJacob Faibussowitsch { 224247f7623dSRémi Lacroix Mat_MPIBAIJ *aij = (Mat_MPIBAIJ *)A->data; 2243a873a8cdSSam Reynolds PetscInt m, N, i, *garray = aij->garray; 224447f7623dSRémi Lacroix PetscInt ib, jb, bs = A->rmap->bs; 224547f7623dSRémi Lacroix Mat_SeqBAIJ *a_aij = (Mat_SeqBAIJ *)aij->A->data; 224647f7623dSRémi Lacroix MatScalar *a_val = a_aij->a; 224747f7623dSRémi Lacroix Mat_SeqBAIJ *b_aij = (Mat_SeqBAIJ *)aij->B->data; 224847f7623dSRémi Lacroix MatScalar *b_val = b_aij->a; 224947f7623dSRémi Lacroix PetscReal *work; 225047f7623dSRémi Lacroix 225147f7623dSRémi Lacroix PetscFunctionBegin; 22529566063dSJacob Faibussowitsch PetscCall(MatGetSize(A, &m, &N)); 22539566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(N, &work)); 2254857cbf51SRichard Tran Mills if (type == NORM_2) { 225547f7623dSRémi Lacroix for (i = a_aij->i[0]; i < a_aij->i[aij->A->rmap->n / bs]; i++) { 225647f7623dSRémi Lacroix for (jb = 0; jb < bs; jb++) { 225747f7623dSRémi Lacroix for (ib = 0; ib < bs; ib++) { 225847f7623dSRémi Lacroix work[A->cmap->rstart + a_aij->j[i] * bs + jb] += PetscAbsScalar(*a_val * *a_val); 225947f7623dSRémi Lacroix a_val++; 226047f7623dSRémi Lacroix } 226147f7623dSRémi Lacroix } 226247f7623dSRémi Lacroix } 226347f7623dSRémi Lacroix for (i = b_aij->i[0]; i < b_aij->i[aij->B->rmap->n / bs]; i++) { 226447f7623dSRémi Lacroix for (jb = 0; jb < bs; jb++) { 226547f7623dSRémi Lacroix for (ib = 0; ib < bs; ib++) { 226647f7623dSRémi Lacroix work[garray[b_aij->j[i]] * bs + jb] += PetscAbsScalar(*b_val * *b_val); 226747f7623dSRémi Lacroix b_val++; 226847f7623dSRémi Lacroix } 226947f7623dSRémi Lacroix } 227047f7623dSRémi Lacroix } 2271857cbf51SRichard Tran Mills } else if (type == NORM_1) { 227247f7623dSRémi Lacroix for (i = a_aij->i[0]; i < a_aij->i[aij->A->rmap->n / bs]; i++) { 227347f7623dSRémi Lacroix for (jb = 0; jb < bs; jb++) { 227447f7623dSRémi Lacroix for (ib = 0; ib < bs; ib++) { 227547f7623dSRémi Lacroix work[A->cmap->rstart + a_aij->j[i] * bs + jb] += PetscAbsScalar(*a_val); 227647f7623dSRémi Lacroix a_val++; 227747f7623dSRémi Lacroix } 227847f7623dSRémi Lacroix } 227947f7623dSRémi Lacroix } 228047f7623dSRémi Lacroix for (i = b_aij->i[0]; i < b_aij->i[aij->B->rmap->n / bs]; i++) { 228147f7623dSRémi Lacroix for (jb = 0; jb < bs; jb++) { 228247f7623dSRémi Lacroix for (ib = 0; ib < bs; ib++) { 228347f7623dSRémi Lacroix work[garray[b_aij->j[i]] * bs + jb] += PetscAbsScalar(*b_val); 228447f7623dSRémi Lacroix b_val++; 228547f7623dSRémi Lacroix } 228647f7623dSRémi Lacroix } 228747f7623dSRémi Lacroix } 2288857cbf51SRichard Tran Mills } else if (type == NORM_INFINITY) { 228947f7623dSRémi Lacroix for (i = a_aij->i[0]; i < a_aij->i[aij->A->rmap->n / bs]; i++) { 229047f7623dSRémi Lacroix for (jb = 0; jb < bs; jb++) { 229147f7623dSRémi Lacroix for (ib = 0; ib < bs; ib++) { 22926497c311SBarry Smith PetscInt col = A->cmap->rstart + a_aij->j[i] * bs + jb; 229347f7623dSRémi Lacroix work[col] = PetscMax(PetscAbsScalar(*a_val), work[col]); 229447f7623dSRémi Lacroix a_val++; 229547f7623dSRémi Lacroix } 229647f7623dSRémi Lacroix } 229747f7623dSRémi Lacroix } 229847f7623dSRémi Lacroix for (i = b_aij->i[0]; i < b_aij->i[aij->B->rmap->n / bs]; i++) { 229947f7623dSRémi Lacroix for (jb = 0; jb < bs; jb++) { 230047f7623dSRémi Lacroix for (ib = 0; ib < bs; ib++) { 23016497c311SBarry Smith PetscInt col = garray[b_aij->j[i]] * bs + jb; 230247f7623dSRémi Lacroix work[col] = PetscMax(PetscAbsScalar(*b_val), work[col]); 230347f7623dSRémi Lacroix b_val++; 230447f7623dSRémi Lacroix } 230547f7623dSRémi Lacroix } 230647f7623dSRémi Lacroix } 2307857cbf51SRichard Tran Mills } else if (type == REDUCTION_SUM_REALPART || type == REDUCTION_MEAN_REALPART) { 2308a873a8cdSSam Reynolds for (i = a_aij->i[0]; i < a_aij->i[aij->A->rmap->n / bs]; i++) { 2309a873a8cdSSam Reynolds for (jb = 0; jb < bs; jb++) { 2310a873a8cdSSam Reynolds for (ib = 0; ib < bs; ib++) { 2311857cbf51SRichard Tran Mills work[A->cmap->rstart + a_aij->j[i] * bs + jb] += PetscRealPart(*a_val); 2312a873a8cdSSam Reynolds a_val++; 2313a873a8cdSSam Reynolds } 2314a873a8cdSSam Reynolds } 2315a873a8cdSSam Reynolds } 2316a873a8cdSSam Reynolds for (i = b_aij->i[0]; i < b_aij->i[aij->B->rmap->n / bs]; i++) { 2317a873a8cdSSam Reynolds for (jb = 0; jb < bs; jb++) { 2318a873a8cdSSam Reynolds for (ib = 0; ib < bs; ib++) { 2319857cbf51SRichard Tran Mills work[garray[b_aij->j[i]] * bs + jb] += PetscRealPart(*b_val); 2320a873a8cdSSam Reynolds b_val++; 2321a873a8cdSSam Reynolds } 2322a873a8cdSSam Reynolds } 2323a873a8cdSSam Reynolds } 2324857cbf51SRichard Tran Mills } else if (type == REDUCTION_SUM_IMAGINARYPART || type == REDUCTION_MEAN_IMAGINARYPART) { 2325857cbf51SRichard Tran Mills for (i = a_aij->i[0]; i < a_aij->i[aij->A->rmap->n / bs]; i++) { 2326857cbf51SRichard Tran Mills for (jb = 0; jb < bs; jb++) { 2327857cbf51SRichard Tran Mills for (ib = 0; ib < bs; ib++) { 2328857cbf51SRichard Tran Mills work[A->cmap->rstart + a_aij->j[i] * bs + jb] += PetscImaginaryPart(*a_val); 2329857cbf51SRichard Tran Mills a_val++; 2330857cbf51SRichard Tran Mills } 2331857cbf51SRichard Tran Mills } 2332857cbf51SRichard Tran Mills } 2333857cbf51SRichard Tran Mills for (i = b_aij->i[0]; i < b_aij->i[aij->B->rmap->n / bs]; i++) { 2334857cbf51SRichard Tran Mills for (jb = 0; jb < bs; jb++) { 2335857cbf51SRichard Tran Mills for (ib = 0; ib < bs; ib++) { 2336857cbf51SRichard Tran Mills work[garray[b_aij->j[i]] * bs + jb] += PetscImaginaryPart(*b_val); 2337857cbf51SRichard Tran Mills b_val++; 2338857cbf51SRichard Tran Mills } 2339857cbf51SRichard Tran Mills } 2340857cbf51SRichard Tran Mills } 2341857cbf51SRichard Tran Mills } else SETERRQ(PetscObjectComm((PetscObject)A), PETSC_ERR_ARG_WRONG, "Unknown reduction type"); 2342857cbf51SRichard Tran Mills if (type == NORM_INFINITY) { 2343e91c04dfSPierre Jolivet PetscCallMPI(MPIU_Allreduce(work, reductions, N, MPIU_REAL, MPIU_MAX, PetscObjectComm((PetscObject)A))); 234447f7623dSRémi Lacroix } else { 2345e91c04dfSPierre Jolivet PetscCallMPI(MPIU_Allreduce(work, reductions, N, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)A))); 234647f7623dSRémi Lacroix } 23479566063dSJacob Faibussowitsch PetscCall(PetscFree(work)); 2348857cbf51SRichard Tran Mills if (type == NORM_2) { 2349a873a8cdSSam Reynolds for (i = 0; i < N; i++) reductions[i] = PetscSqrtReal(reductions[i]); 2350857cbf51SRichard Tran Mills } else if (type == REDUCTION_MEAN_REALPART || type == REDUCTION_MEAN_IMAGINARYPART) { 2351a873a8cdSSam Reynolds for (i = 0; i < N; i++) reductions[i] /= m; 235247f7623dSRémi Lacroix } 23533ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 235447f7623dSRémi Lacroix } 235547f7623dSRémi Lacroix 235666976f2fSJacob Faibussowitsch static PetscErrorCode MatInvertBlockDiagonal_MPIBAIJ(Mat A, const PetscScalar **values) 2357d71ae5a4SJacob Faibussowitsch { 2358bbead8a2SBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 2359bbead8a2SBarry Smith 2360bbead8a2SBarry Smith PetscFunctionBegin; 23619566063dSJacob Faibussowitsch PetscCall(MatInvertBlockDiagonal(a->A, values)); 23627b6c816cSBarry Smith A->factorerrortype = a->A->factorerrortype; 23637b6c816cSBarry Smith A->factorerror_zeropivot_value = a->A->factorerror_zeropivot_value; 23647b6c816cSBarry Smith A->factorerror_zeropivot_row = a->A->factorerror_zeropivot_row; 23653ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2366bbead8a2SBarry Smith } 2367bbead8a2SBarry Smith 236866976f2fSJacob Faibussowitsch static PetscErrorCode MatShift_MPIBAIJ(Mat Y, PetscScalar a) 2369d71ae5a4SJacob Faibussowitsch { 23707d68702bSBarry Smith Mat_MPIBAIJ *maij = (Mat_MPIBAIJ *)Y->data; 23716f33a894SBarry Smith Mat_SeqBAIJ *aij = (Mat_SeqBAIJ *)maij->A->data; 23727d68702bSBarry Smith 23737d68702bSBarry Smith PetscFunctionBegin; 23746f33a894SBarry Smith if (!Y->preallocated) { 23759566063dSJacob Faibussowitsch PetscCall(MatMPIBAIJSetPreallocation(Y, Y->rmap->bs, 1, NULL, 0, NULL)); 23766f33a894SBarry Smith } else if (!aij->nz) { 2377b83222d8SBarry Smith PetscInt nonew = aij->nonew; 23789566063dSJacob Faibussowitsch PetscCall(MatSeqBAIJSetPreallocation(maij->A, Y->rmap->bs, 1, NULL)); 2379b83222d8SBarry Smith aij->nonew = nonew; 23807d68702bSBarry Smith } 23819566063dSJacob Faibussowitsch PetscCall(MatShift_Basic(Y, a)); 23823ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 23837d68702bSBarry Smith } 23848c7482ecSBarry Smith 238566976f2fSJacob Faibussowitsch static PetscErrorCode MatMissingDiagonal_MPIBAIJ(Mat A, PetscBool *missing, PetscInt *d) 2386d71ae5a4SJacob Faibussowitsch { 23873b49f96aSBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 23883b49f96aSBarry Smith 23893b49f96aSBarry Smith PetscFunctionBegin; 23905f80ce2aSJacob Faibussowitsch PetscCheck(A->rmap->n == A->cmap->n, PETSC_COMM_SELF, PETSC_ERR_SUP, "Only works for square matrices"); 23919566063dSJacob Faibussowitsch PetscCall(MatMissingDiagonal(a->A, missing, d)); 23923b49f96aSBarry Smith if (d) { 23933b49f96aSBarry Smith PetscInt rstart; 23949566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(A, &rstart, NULL)); 23953b49f96aSBarry Smith *d += rstart / A->rmap->bs; 23963b49f96aSBarry Smith } 23973ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 23983b49f96aSBarry Smith } 23993b49f96aSBarry Smith 240066976f2fSJacob Faibussowitsch static PetscErrorCode MatGetDiagonalBlock_MPIBAIJ(Mat A, Mat *a) 2401d71ae5a4SJacob Faibussowitsch { 2402a5b7ff6bSBarry Smith PetscFunctionBegin; 2403a5b7ff6bSBarry Smith *a = ((Mat_MPIBAIJ *)A->data)->A; 24043ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2405a5b7ff6bSBarry Smith } 2406a5b7ff6bSBarry Smith 240717ea310bSPierre Jolivet static PetscErrorCode MatEliminateZeros_MPIBAIJ(Mat A, PetscBool keep) 240817ea310bSPierre Jolivet { 240917ea310bSPierre Jolivet Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 241017ea310bSPierre Jolivet 241117ea310bSPierre Jolivet PetscFunctionBegin; 241217ea310bSPierre Jolivet PetscCall(MatEliminateZeros_SeqBAIJ(a->A, keep)); // possibly keep zero diagonal coefficients 241317ea310bSPierre Jolivet PetscCall(MatEliminateZeros_SeqBAIJ(a->B, PETSC_FALSE)); // never keep zero diagonal coefficients 241417ea310bSPierre Jolivet PetscFunctionReturn(PETSC_SUCCESS); 241517ea310bSPierre Jolivet } 241617ea310bSPierre Jolivet 24173964eb88SJed Brown static struct _MatOps MatOps_Values = {MatSetValues_MPIBAIJ, 2418cc2dc46cSBarry Smith MatGetRow_MPIBAIJ, 2419cc2dc46cSBarry Smith MatRestoreRow_MPIBAIJ, 2420cc2dc46cSBarry Smith MatMult_MPIBAIJ, 242197304618SKris Buschelman /* 4*/ MatMultAdd_MPIBAIJ, 24227c922b88SBarry Smith MatMultTranspose_MPIBAIJ, 24237c922b88SBarry Smith MatMultTransposeAdd_MPIBAIJ, 2424f4259b30SLisandro Dalcin NULL, 2425f4259b30SLisandro Dalcin NULL, 2426f4259b30SLisandro Dalcin NULL, 2427f4259b30SLisandro Dalcin /*10*/ NULL, 2428f4259b30SLisandro Dalcin NULL, 2429f4259b30SLisandro Dalcin NULL, 2430b1a666ecSBarry Smith MatSOR_MPIBAIJ, 2431cc2dc46cSBarry Smith MatTranspose_MPIBAIJ, 243297304618SKris Buschelman /*15*/ MatGetInfo_MPIBAIJ, 24337fc3c18eSBarry Smith MatEqual_MPIBAIJ, 2434cc2dc46cSBarry Smith MatGetDiagonal_MPIBAIJ, 2435cc2dc46cSBarry Smith MatDiagonalScale_MPIBAIJ, 2436cc2dc46cSBarry Smith MatNorm_MPIBAIJ, 243797304618SKris Buschelman /*20*/ MatAssemblyBegin_MPIBAIJ, 2438cc2dc46cSBarry Smith MatAssemblyEnd_MPIBAIJ, 2439cc2dc46cSBarry Smith MatSetOption_MPIBAIJ, 2440cc2dc46cSBarry Smith MatZeroEntries_MPIBAIJ, 2441d519adbfSMatthew Knepley /*24*/ MatZeroRows_MPIBAIJ, 2442f4259b30SLisandro Dalcin NULL, 2443f4259b30SLisandro Dalcin NULL, 2444f4259b30SLisandro Dalcin NULL, 2445f4259b30SLisandro Dalcin NULL, 244626cec326SBarry Smith /*29*/ MatSetUp_MPI_Hash, 2447f4259b30SLisandro Dalcin NULL, 2448f4259b30SLisandro Dalcin NULL, 2449a5b7ff6bSBarry Smith MatGetDiagonalBlock_MPIBAIJ, 2450f4259b30SLisandro Dalcin NULL, 2451d519adbfSMatthew Knepley /*34*/ MatDuplicate_MPIBAIJ, 2452f4259b30SLisandro Dalcin NULL, 2453f4259b30SLisandro Dalcin NULL, 2454f4259b30SLisandro Dalcin NULL, 2455f4259b30SLisandro Dalcin NULL, 2456d519adbfSMatthew Knepley /*39*/ MatAXPY_MPIBAIJ, 24577dae84e0SHong Zhang MatCreateSubMatrices_MPIBAIJ, 2458cc2dc46cSBarry Smith MatIncreaseOverlap_MPIBAIJ, 2459cc2dc46cSBarry Smith MatGetValues_MPIBAIJ, 24603c896bc6SHong Zhang MatCopy_MPIBAIJ, 2461f4259b30SLisandro Dalcin /*44*/ NULL, 2462cc2dc46cSBarry Smith MatScale_MPIBAIJ, 24637d68702bSBarry Smith MatShift_MPIBAIJ, 2464f4259b30SLisandro Dalcin NULL, 24656f0a72daSMatthew G. Knepley MatZeroRowsColumns_MPIBAIJ, 2466f4259b30SLisandro Dalcin /*49*/ NULL, 2467f4259b30SLisandro Dalcin NULL, 2468f4259b30SLisandro Dalcin NULL, 2469f4259b30SLisandro Dalcin NULL, 2470f4259b30SLisandro Dalcin NULL, 247193dfae19SHong Zhang /*54*/ MatFDColoringCreate_MPIXAIJ, 2472f4259b30SLisandro Dalcin NULL, 2473cc2dc46cSBarry Smith MatSetUnfactored_MPIBAIJ, 247482094794SBarry Smith MatPermute_MPIBAIJ, 2475cc2dc46cSBarry Smith MatSetValuesBlocked_MPIBAIJ, 24767dae84e0SHong Zhang /*59*/ MatCreateSubMatrix_MPIBAIJ, 2477f14a1c24SBarry Smith MatDestroy_MPIBAIJ, 2478f14a1c24SBarry Smith MatView_MPIBAIJ, 2479f4259b30SLisandro Dalcin NULL, 2480f4259b30SLisandro Dalcin NULL, 2481f4259b30SLisandro Dalcin /*64*/ NULL, 2482f4259b30SLisandro Dalcin NULL, 2483f4259b30SLisandro Dalcin NULL, 2484f4259b30SLisandro Dalcin NULL, 2485*8bb0f5c6SPierre Jolivet MatGetRowMaxAbs_MPIBAIJ, 2486*8bb0f5c6SPierre Jolivet /*69*/ NULL, 2487f4259b30SLisandro Dalcin NULL, 2488f4259b30SLisandro Dalcin NULL, 2489f6d58c54SBarry Smith MatFDColoringApply_BAIJ, 2490f4259b30SLisandro Dalcin NULL, 2491*8bb0f5c6SPierre Jolivet /*74*/ NULL, 2492f4259b30SLisandro Dalcin NULL, 2493f4259b30SLisandro Dalcin NULL, 2494f4259b30SLisandro Dalcin NULL, 24955bba2384SShri Abhyankar MatLoad_MPIBAIJ, 2496*8bb0f5c6SPierre Jolivet /*79*/ NULL, 2497*8bb0f5c6SPierre Jolivet NULL, 2498*8bb0f5c6SPierre Jolivet NULL, 2499*8bb0f5c6SPierre Jolivet NULL, 2500*8bb0f5c6SPierre Jolivet NULL, 2501f4259b30SLisandro Dalcin /*84*/ NULL, 2502f4259b30SLisandro Dalcin NULL, 2503f4259b30SLisandro Dalcin NULL, 2504f4259b30SLisandro Dalcin NULL, 2505f4259b30SLisandro Dalcin NULL, 2506f4259b30SLisandro Dalcin /*89*/ NULL, 2507f4259b30SLisandro Dalcin NULL, 2508f4259b30SLisandro Dalcin NULL, 2509f4259b30SLisandro Dalcin NULL, 2510*8bb0f5c6SPierre Jolivet MatConjugate_MPIBAIJ, 2511f4259b30SLisandro Dalcin /*94*/ NULL, 2512f4259b30SLisandro Dalcin NULL, 2513*8bb0f5c6SPierre Jolivet MatRealPart_MPIBAIJ, 2514*8bb0f5c6SPierre Jolivet MatImaginaryPart_MPIBAIJ, 2515f4259b30SLisandro Dalcin NULL, 2516f4259b30SLisandro Dalcin /*99*/ NULL, 2517f4259b30SLisandro Dalcin NULL, 2518f4259b30SLisandro Dalcin NULL, 2519f4259b30SLisandro Dalcin NULL, 2520f4259b30SLisandro Dalcin NULL, 2521*8bb0f5c6SPierre Jolivet /*104*/ MatMissingDiagonal_MPIBAIJ, 2522*8bb0f5c6SPierre Jolivet MatGetSeqNonzeroStructure_MPIBAIJ, 2523*8bb0f5c6SPierre Jolivet NULL, 2524*8bb0f5c6SPierre Jolivet MatGetGhosts_MPIBAIJ, 2525f4259b30SLisandro Dalcin NULL, 2526f4259b30SLisandro Dalcin /*109*/ NULL, 2527f4259b30SLisandro Dalcin NULL, 2528f4259b30SLisandro Dalcin NULL, 2529f4259b30SLisandro Dalcin NULL, 2530f4259b30SLisandro Dalcin NULL, 2531*8bb0f5c6SPierre Jolivet /*114*/ MatGetMultiProcBlock_MPIBAIJ, 2532f4259b30SLisandro Dalcin NULL, 2533*8bb0f5c6SPierre Jolivet MatGetColumnReductions_MPIBAIJ, 2534*8bb0f5c6SPierre Jolivet MatInvertBlockDiagonal_MPIBAIJ, 2535f4259b30SLisandro Dalcin NULL, 2536f4259b30SLisandro Dalcin /*119*/ NULL, 2537f4259b30SLisandro Dalcin NULL, 2538f4259b30SLisandro Dalcin NULL, 2539f4259b30SLisandro Dalcin NULL, 2540*8bb0f5c6SPierre Jolivet NULL, 2541f4259b30SLisandro Dalcin /*124*/ NULL, 2542f4259b30SLisandro Dalcin NULL, 2543f4259b30SLisandro Dalcin NULL, 2544*8bb0f5c6SPierre Jolivet MatSetBlockSizes_Default, 2545f4259b30SLisandro Dalcin NULL, 2546*8bb0f5c6SPierre Jolivet /*129*/ MatFDColoringSetUp_MPIXAIJ, 2547f4259b30SLisandro Dalcin NULL, 2548*8bb0f5c6SPierre Jolivet MatCreateMPIMatConcatenateSeqMat_MPIBAIJ, 2549f4259b30SLisandro Dalcin NULL, 2550f4259b30SLisandro Dalcin NULL, 2551f4259b30SLisandro Dalcin /*134*/ NULL, 2552f4259b30SLisandro Dalcin NULL, 2553f4259b30SLisandro Dalcin NULL, 2554eede4a3fSMark Adams MatEliminateZeros_MPIBAIJ, 25554cc2b5b5SPierre Jolivet MatGetRowSumAbs_MPIBAIJ, 2556*8bb0f5c6SPierre Jolivet /*139*/ NULL, 255742ce410bSJunchao Zhang NULL, 255842ce410bSJunchao Zhang NULL, 2559fe1fc275SAlexander MatCopyHashToXAIJ_MPI_Hash}; 256079bdfe76SSatish Balay 2561cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIBAIJ_MPISBAIJ(Mat, MatType, MatReuse, Mat *); 2562c9225affSStefano Zampini PETSC_INTERN PetscErrorCode MatConvert_XAIJ_IS(Mat, MatType, MatReuse, Mat *); 2563d94109b8SHong Zhang 256466976f2fSJacob Faibussowitsch static PetscErrorCode MatMPIBAIJSetPreallocationCSR_MPIBAIJ(Mat B, PetscInt bs, const PetscInt ii[], const PetscInt jj[], const PetscScalar V[]) 2565d71ae5a4SJacob Faibussowitsch { 2566b8d659d7SLisandro Dalcin PetscInt m, rstart, cstart, cend; 2567f4259b30SLisandro Dalcin PetscInt i, j, dlen, olen, nz, nz_max = 0, *d_nnz = NULL, *o_nnz = NULL; 2568f4259b30SLisandro Dalcin const PetscInt *JJ = NULL; 2569f4259b30SLisandro Dalcin PetscScalar *values = NULL; 2570d47bf9aaSJed Brown PetscBool roworiented = ((Mat_MPIBAIJ *)B->data)->roworiented; 25713bd0feecSPierre Jolivet PetscBool nooffprocentries; 2572aac34f13SBarry Smith 2573aac34f13SBarry Smith PetscFunctionBegin; 25749566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetBlockSize(B->rmap, bs)); 25759566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetBlockSize(B->cmap, bs)); 25769566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->rmap)); 25779566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->cmap)); 25789566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetBlockSize(B->rmap, &bs)); 2579d0f46423SBarry Smith m = B->rmap->n / bs; 2580d0f46423SBarry Smith rstart = B->rmap->rstart / bs; 2581d0f46423SBarry Smith cstart = B->cmap->rstart / bs; 2582d0f46423SBarry Smith cend = B->cmap->rend / bs; 2583b8d659d7SLisandro Dalcin 25845f80ce2aSJacob Faibussowitsch PetscCheck(!ii[0], PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "ii[0] must be 0 but it is %" PetscInt_FMT, ii[0]); 25859566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(m, &d_nnz, m, &o_nnz)); 2586aac34f13SBarry Smith for (i = 0; i < m; i++) { 2587cf12db73SBarry Smith nz = ii[i + 1] - ii[i]; 25885f80ce2aSJacob Faibussowitsch PetscCheck(nz >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Local row %" PetscInt_FMT " has a negative number of columns %" PetscInt_FMT, i, nz); 2589b8d659d7SLisandro Dalcin nz_max = PetscMax(nz_max, nz); 259037cd3c0dSBarry Smith dlen = 0; 259137cd3c0dSBarry Smith olen = 0; 2592cf12db73SBarry Smith JJ = jj + ii[i]; 2593b8d659d7SLisandro Dalcin for (j = 0; j < nz; j++) { 259437cd3c0dSBarry Smith if (*JJ < cstart || *JJ >= cend) olen++; 259537cd3c0dSBarry Smith else dlen++; 2596aac34f13SBarry Smith JJ++; 2597aac34f13SBarry Smith } 259837cd3c0dSBarry Smith d_nnz[i] = dlen; 259937cd3c0dSBarry Smith o_nnz[i] = olen; 2600aac34f13SBarry Smith } 26019566063dSJacob Faibussowitsch PetscCall(MatMPIBAIJSetPreallocation(B, bs, 0, d_nnz, 0, o_nnz)); 26029566063dSJacob Faibussowitsch PetscCall(PetscFree2(d_nnz, o_nnz)); 2603aac34f13SBarry Smith 2604b8d659d7SLisandro Dalcin values = (PetscScalar *)V; 260548a46eb9SPierre Jolivet if (!values) PetscCall(PetscCalloc1(bs * bs * nz_max, &values)); 2606b8d659d7SLisandro Dalcin for (i = 0; i < m; i++) { 2607b8d659d7SLisandro Dalcin PetscInt row = i + rstart; 2608cf12db73SBarry Smith PetscInt ncols = ii[i + 1] - ii[i]; 2609cf12db73SBarry Smith const PetscInt *icols = jj + ii[i]; 2610bb80cfbbSStefano Zampini if (bs == 1 || !roworiented) { /* block ordering matches the non-nested layout of MatSetValues so we can insert entire rows */ 2611cf12db73SBarry Smith const PetscScalar *svals = values + (V ? (bs * bs * ii[i]) : 0); 26129566063dSJacob Faibussowitsch PetscCall(MatSetValuesBlocked_MPIBAIJ(B, 1, &row, ncols, icols, svals, INSERT_VALUES)); 26133adadaf3SJed Brown } else { /* block ordering does not match so we can only insert one block at a time. */ 26143adadaf3SJed Brown PetscInt j; 26153adadaf3SJed Brown for (j = 0; j < ncols; j++) { 26163adadaf3SJed Brown const PetscScalar *svals = values + (V ? (bs * bs * (ii[i] + j)) : 0); 26179566063dSJacob Faibussowitsch PetscCall(MatSetValuesBlocked_MPIBAIJ(B, 1, &row, 1, &icols[j], svals, INSERT_VALUES)); 26183adadaf3SJed Brown } 26193adadaf3SJed Brown } 2620aac34f13SBarry Smith } 2621aac34f13SBarry Smith 26229566063dSJacob Faibussowitsch if (!V) PetscCall(PetscFree(values)); 26233bd0feecSPierre Jolivet nooffprocentries = B->nooffprocentries; 26243bd0feecSPierre Jolivet B->nooffprocentries = PETSC_TRUE; 26259566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY)); 26269566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY)); 26273bd0feecSPierre Jolivet B->nooffprocentries = nooffprocentries; 26283bd0feecSPierre Jolivet 26299566063dSJacob Faibussowitsch PetscCall(MatSetOption(B, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE)); 26303ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2631aac34f13SBarry Smith } 2632aac34f13SBarry Smith 2633aac34f13SBarry Smith /*@C 263411a5261eSBarry Smith MatMPIBAIJSetPreallocationCSR - Creates a sparse parallel matrix in `MATBAIJ` format using the given nonzero structure and (optional) numerical values 2635aac34f13SBarry Smith 2636d083f849SBarry Smith Collective 2637aac34f13SBarry Smith 2638aac34f13SBarry Smith Input Parameters: 26391c4f3114SJed Brown + B - the matrix 2640dfb205c3SBarry Smith . bs - the block size 264120f4b53cSBarry Smith . i - the indices into `j` for the start of each local row (starts with zero) 2642aac34f13SBarry Smith . j - the column indices for each local row (starts with zero) these must be sorted for each row 2643d8a51d2aSBarry Smith - v - optional values in the matrix, use `NULL` if not provided 2644aac34f13SBarry Smith 2645664954b6SBarry Smith Level: advanced 2646aac34f13SBarry Smith 264795452b02SPatrick Sanan Notes: 2648d8a51d2aSBarry Smith The `i`, `j`, and `v` arrays ARE copied by this routine into the internal format used by PETSc; 2649d8a51d2aSBarry Smith thus you CANNOT change the matrix entries by changing the values of `v` after you have 2650d8a51d2aSBarry Smith called this routine. 2651d8a51d2aSBarry Smith 265211a5261eSBarry Smith The order of the entries in values is specified by the `MatOption` `MAT_ROW_ORIENTED`. For example, C programs 265311a5261eSBarry Smith may want to use the default `MAT_ROW_ORIENTED` with value `PETSC_TRUE` and use an array v[nnz][bs][bs] where the second index is 26543adadaf3SJed Brown over rows within a block and the last index is over columns within a block row. Fortran programs will likely set 265511a5261eSBarry Smith `MAT_ROW_ORIENTED` with value `PETSC_FALSE` and use a Fortran array v(bs,bs,nnz) in which the first index is over rows within a 26563adadaf3SJed Brown block column and the second index is over columns within a block. 26573adadaf3SJed Brown 2658664954b6SBarry Smith Though this routine has Preallocation() in the name it also sets the exact nonzero locations of the matrix entries and usually the numerical values as well 2659664954b6SBarry Smith 26607d2c085eSPierre Jolivet .seealso: `Mat`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIBAIJSetPreallocation()`, `MatCreateAIJ()`, `MATMPIAIJ`, `MatCreateMPIBAIJWithArrays()`, `MATMPIBAIJ` 2661aac34f13SBarry Smith @*/ 2662d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIBAIJSetPreallocationCSR(Mat B, PetscInt bs, const PetscInt i[], const PetscInt j[], const PetscScalar v[]) 2663d71ae5a4SJacob Faibussowitsch { 2664aac34f13SBarry Smith PetscFunctionBegin; 26656ba663aaSJed Brown PetscValidHeaderSpecific(B, MAT_CLASSID, 1); 26666ba663aaSJed Brown PetscValidType(B, 1); 26676ba663aaSJed Brown PetscValidLogicalCollectiveInt(B, bs, 2); 2668cac4c232SBarry Smith PetscTryMethod(B, "MatMPIBAIJSetPreallocationCSR_C", (Mat, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[]), (B, bs, i, j, v)); 26693ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2670aac34f13SBarry Smith } 2671aac34f13SBarry Smith 2672d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIBAIJSetPreallocation_MPIBAIJ(Mat B, PetscInt bs, PetscInt d_nz, const PetscInt *d_nnz, PetscInt o_nz, const PetscInt *o_nnz) 2673d71ae5a4SJacob Faibussowitsch { 2674ad79cf63SBarry Smith Mat_MPIBAIJ *b = (Mat_MPIBAIJ *)B->data; 2675535b19f3SBarry Smith PetscInt i; 26765d2a9ed1SStefano Zampini PetscMPIInt size; 2677a23d5eceSKris Buschelman 2678a23d5eceSKris Buschelman PetscFunctionBegin; 2679ad79cf63SBarry Smith if (B->hash_active) { 2680aea10558SJacob Faibussowitsch B->ops[0] = b->cops; 2681ad79cf63SBarry Smith B->hash_active = PETSC_FALSE; 2682ad79cf63SBarry Smith } 2683ad79cf63SBarry Smith if (!B->preallocated) PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)B), bs, &B->bstash)); 268458b7e2c1SStefano Zampini PetscCall(MatSetBlockSize(B, bs)); 26859566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->rmap)); 26869566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->cmap)); 26879566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetBlockSize(B->rmap, &bs)); 2688899cda47SBarry Smith 2689a23d5eceSKris Buschelman if (d_nnz) { 2690ad540459SPierre Jolivet for (i = 0; i < B->rmap->n / bs; i++) PetscCheck(d_nnz[i] >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "d_nnz cannot be less than -1: local row %" PetscInt_FMT " value %" PetscInt_FMT, i, d_nnz[i]); 2691a23d5eceSKris Buschelman } 2692a23d5eceSKris Buschelman if (o_nnz) { 2693ad540459SPierre Jolivet for (i = 0; i < B->rmap->n / bs; i++) PetscCheck(o_nnz[i] >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "o_nnz cannot be less than -1: local row %" PetscInt_FMT " value %" PetscInt_FMT, i, o_nnz[i]); 2694a23d5eceSKris Buschelman } 2695a23d5eceSKris Buschelman 2696a23d5eceSKris Buschelman b->bs2 = bs * bs; 2697d0f46423SBarry Smith b->mbs = B->rmap->n / bs; 2698d0f46423SBarry Smith b->nbs = B->cmap->n / bs; 2699d0f46423SBarry Smith b->Mbs = B->rmap->N / bs; 2700d0f46423SBarry Smith b->Nbs = B->cmap->N / bs; 2701a23d5eceSKris Buschelman 2702ad540459SPierre Jolivet for (i = 0; i <= b->size; i++) b->rangebs[i] = B->rmap->range[i] / bs; 2703d0f46423SBarry Smith b->rstartbs = B->rmap->rstart / bs; 2704d0f46423SBarry Smith b->rendbs = B->rmap->rend / bs; 2705d0f46423SBarry Smith b->cstartbs = B->cmap->rstart / bs; 2706d0f46423SBarry Smith b->cendbs = B->cmap->rend / bs; 2707a23d5eceSKris Buschelman 2708cb7b82ddSBarry Smith #if defined(PETSC_USE_CTABLE) 2709eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIDestroy(&b->colmap)); 2710cb7b82ddSBarry Smith #else 27119566063dSJacob Faibussowitsch PetscCall(PetscFree(b->colmap)); 2712cb7b82ddSBarry Smith #endif 27139566063dSJacob Faibussowitsch PetscCall(PetscFree(b->garray)); 27149566063dSJacob Faibussowitsch PetscCall(VecDestroy(&b->lvec)); 27159566063dSJacob Faibussowitsch PetscCall(VecScatterDestroy(&b->Mvctx)); 2716cb7b82ddSBarry Smith 27179566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)B), &size)); 2718c508b908SBarry Smith 2719c508b908SBarry Smith MatSeqXAIJGetOptions_Private(b->B); 27209566063dSJacob Faibussowitsch PetscCall(MatDestroy(&b->B)); 27219566063dSJacob Faibussowitsch PetscCall(MatCreate(PETSC_COMM_SELF, &b->B)); 27229566063dSJacob Faibussowitsch PetscCall(MatSetSizes(b->B, B->rmap->n, size > 1 ? B->cmap->N : 0, B->rmap->n, size > 1 ? B->cmap->N : 0)); 27239566063dSJacob Faibussowitsch PetscCall(MatSetType(b->B, MATSEQBAIJ)); 2724c508b908SBarry Smith MatSeqXAIJRestoreOptions_Private(b->B); 2725cb7b82ddSBarry Smith 2726c508b908SBarry Smith MatSeqXAIJGetOptions_Private(b->A); 2727ad79cf63SBarry Smith PetscCall(MatDestroy(&b->A)); 27289566063dSJacob Faibussowitsch PetscCall(MatCreate(PETSC_COMM_SELF, &b->A)); 27299566063dSJacob Faibussowitsch PetscCall(MatSetSizes(b->A, B->rmap->n, B->cmap->n, B->rmap->n, B->cmap->n)); 27309566063dSJacob Faibussowitsch PetscCall(MatSetType(b->A, MATSEQBAIJ)); 2731c508b908SBarry Smith MatSeqXAIJRestoreOptions_Private(b->A); 2732a23d5eceSKris Buschelman 27339566063dSJacob Faibussowitsch PetscCall(MatSeqBAIJSetPreallocation(b->A, bs, d_nz, d_nnz)); 27349566063dSJacob Faibussowitsch PetscCall(MatSeqBAIJSetPreallocation(b->B, bs, o_nz, o_nnz)); 2735526dfc15SBarry Smith B->preallocated = PETSC_TRUE; 2736cb7b82ddSBarry Smith B->was_assembled = PETSC_FALSE; 2737cb7b82ddSBarry Smith B->assembled = PETSC_FALSE; 27383ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2739a23d5eceSKris Buschelman } 2740a23d5eceSKris Buschelman 27417087cfbeSBarry Smith extern PetscErrorCode MatDiagonalScaleLocal_MPIBAIJ(Mat, Vec); 27427087cfbeSBarry Smith extern PetscErrorCode MatSetHashTableFactor_MPIBAIJ(Mat, PetscReal); 27435bf65638SKris Buschelman 2744d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode MatConvert_MPIBAIJ_MPIAdj(Mat B, MatType newtype, MatReuse reuse, Mat *adj) 2745d71ae5a4SJacob Faibussowitsch { 274682094794SBarry Smith Mat_MPIBAIJ *b = (Mat_MPIBAIJ *)B->data; 274782094794SBarry Smith Mat_SeqBAIJ *d = (Mat_SeqBAIJ *)b->A->data, *o = (Mat_SeqBAIJ *)b->B->data; 274882094794SBarry Smith PetscInt M = B->rmap->n / B->rmap->bs, i, *ii, *jj, cnt, j, k, rstart = B->rmap->rstart / B->rmap->bs; 274982094794SBarry Smith const PetscInt *id = d->i, *jd = d->j, *io = o->i, *jo = o->j, *garray = b->garray; 275082094794SBarry Smith 275182094794SBarry Smith PetscFunctionBegin; 27529566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(M + 1, &ii)); 275382094794SBarry Smith ii[0] = 0; 275482094794SBarry Smith for (i = 0; i < M; i++) { 275508401ef6SPierre Jolivet PetscCheck((id[i + 1] - id[i]) >= 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Indices wrong %" PetscInt_FMT " %" PetscInt_FMT " %" PetscInt_FMT, i, id[i], id[i + 1]); 275608401ef6SPierre Jolivet PetscCheck((io[i + 1] - io[i]) >= 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Indices wrong %" PetscInt_FMT " %" PetscInt_FMT " %" PetscInt_FMT, i, io[i], io[i + 1]); 275782094794SBarry Smith ii[i + 1] = ii[i] + id[i + 1] - id[i] + io[i + 1] - io[i]; 27585ee9ba1cSJed Brown /* remove one from count of matrix has diagonal */ 27595ee9ba1cSJed Brown for (j = id[i]; j < id[i + 1]; j++) { 27609371c9d4SSatish Balay if (jd[j] == i) { 27619371c9d4SSatish Balay ii[i + 1]--; 27629371c9d4SSatish Balay break; 27639371c9d4SSatish Balay } 27645ee9ba1cSJed Brown } 276582094794SBarry Smith } 27669566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(ii[M], &jj)); 276782094794SBarry Smith cnt = 0; 276882094794SBarry Smith for (i = 0; i < M; i++) { 276982094794SBarry Smith for (j = io[i]; j < io[i + 1]; j++) { 277082094794SBarry Smith if (garray[jo[j]] > rstart) break; 277182094794SBarry Smith jj[cnt++] = garray[jo[j]]; 277282094794SBarry Smith } 277382094794SBarry Smith for (k = id[i]; k < id[i + 1]; k++) { 2774ad540459SPierre Jolivet if (jd[k] != i) jj[cnt++] = rstart + jd[k]; 277582094794SBarry Smith } 2776ad540459SPierre Jolivet for (; j < io[i + 1]; j++) jj[cnt++] = garray[jo[j]]; 277782094794SBarry Smith } 27789566063dSJacob Faibussowitsch PetscCall(MatCreateMPIAdj(PetscObjectComm((PetscObject)B), M, B->cmap->N / B->rmap->bs, ii, jj, NULL, adj)); 27793ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 278082094794SBarry Smith } 278182094794SBarry Smith 2782c6db04a5SJed Brown #include <../src/mat/impls/aij/mpi/mpiaij.h> 278362471d69SBarry Smith 2784cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_SeqBAIJ_SeqAIJ(Mat, MatType, MatReuse, Mat *); 2785b2573a8aSBarry Smith 2786d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode MatConvert_MPIBAIJ_MPIAIJ(Mat A, MatType newtype, MatReuse reuse, Mat *newmat) 2787d71ae5a4SJacob Faibussowitsch { 278862471d69SBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 278985a69837SSatish Balay Mat_MPIAIJ *b; 27905f80ce2aSJacob Faibussowitsch Mat B; 279162471d69SBarry Smith 279262471d69SBarry Smith PetscFunctionBegin; 27935f80ce2aSJacob Faibussowitsch PetscCheck(A->assembled, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Matrix must be assembled"); 279462471d69SBarry Smith 27950f6d62edSLisandro Dalcin if (reuse == MAT_REUSE_MATRIX) { 27960f6d62edSLisandro Dalcin B = *newmat; 27970f6d62edSLisandro Dalcin } else { 27989566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)A), &B)); 27999566063dSJacob Faibussowitsch PetscCall(MatSetType(B, MATMPIAIJ)); 28009566063dSJacob Faibussowitsch PetscCall(MatSetSizes(B, A->rmap->n, A->cmap->n, A->rmap->N, A->cmap->N)); 28019566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizes(B, A->rmap->bs, A->cmap->bs)); 28029566063dSJacob Faibussowitsch PetscCall(MatSeqAIJSetPreallocation(B, 0, NULL)); 28039566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(B, 0, NULL, 0, NULL)); 28040f6d62edSLisandro Dalcin } 280562471d69SBarry Smith b = (Mat_MPIAIJ *)B->data; 280662471d69SBarry Smith 28070f6d62edSLisandro Dalcin if (reuse == MAT_REUSE_MATRIX) { 28089566063dSJacob Faibussowitsch PetscCall(MatConvert_SeqBAIJ_SeqAIJ(a->A, MATSEQAIJ, MAT_REUSE_MATRIX, &b->A)); 28099566063dSJacob Faibussowitsch PetscCall(MatConvert_SeqBAIJ_SeqAIJ(a->B, MATSEQAIJ, MAT_REUSE_MATRIX, &b->B)); 28100f6d62edSLisandro Dalcin } else { 28117c612885SStefano Zampini PetscInt *garray = a->garray; 28127c612885SStefano Zampini Mat_SeqAIJ *bB; 28137c612885SStefano Zampini PetscInt bs, nnz; 28149566063dSJacob Faibussowitsch PetscCall(MatDestroy(&b->A)); 28159566063dSJacob Faibussowitsch PetscCall(MatDestroy(&b->B)); 28167c612885SStefano Zampini /* just clear out the data structure */ 2817eb14dd14SAlex Lindsay PetscCall(MatDisAssemble_MPIAIJ(B, PETSC_FALSE)); 28189566063dSJacob Faibussowitsch PetscCall(MatConvert_SeqBAIJ_SeqAIJ(a->A, MATSEQAIJ, MAT_INITIAL_MATRIX, &b->A)); 28199566063dSJacob Faibussowitsch PetscCall(MatConvert_SeqBAIJ_SeqAIJ(a->B, MATSEQAIJ, MAT_INITIAL_MATRIX, &b->B)); 28207c612885SStefano Zampini 28217c612885SStefano Zampini /* Global numbering for b->B columns */ 28227c612885SStefano Zampini bB = (Mat_SeqAIJ *)b->B->data; 28237c612885SStefano Zampini bs = A->rmap->bs; 28247c612885SStefano Zampini nnz = bB->i[A->rmap->n]; 28257c612885SStefano Zampini for (PetscInt k = 0; k < nnz; k++) { 28267c612885SStefano Zampini PetscInt bj = bB->j[k] / bs; 28277c612885SStefano Zampini PetscInt br = bB->j[k] % bs; 28287c612885SStefano Zampini bB->j[k] = garray[bj] * bs + br; 28297c612885SStefano Zampini } 28300f6d62edSLisandro Dalcin } 28319566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY)); 28329566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY)); 28330f6d62edSLisandro Dalcin 2834511c6705SHong Zhang if (reuse == MAT_INPLACE_MATRIX) { 28359566063dSJacob Faibussowitsch PetscCall(MatHeaderReplace(A, &B)); 283662471d69SBarry Smith } else { 283762471d69SBarry Smith *newmat = B; 283862471d69SBarry Smith } 28393ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 284062471d69SBarry Smith } 284162471d69SBarry Smith 28420bad9183SKris Buschelman /*MC 2843fafad747SKris Buschelman MATMPIBAIJ - MATMPIBAIJ = "mpibaij" - A matrix type to be used for distributed block sparse matrices. 28440bad9183SKris Buschelman 28450bad9183SKris Buschelman Options Database Keys: 284611a5261eSBarry Smith + -mat_type mpibaij - sets the matrix type to `MATMPIBAIJ` during a call to `MatSetFromOptions()` 28478c07d4e3SBarry Smith . -mat_block_size <bs> - set the blocksize used to store the matrix 28486679dcc1SBarry Smith . -mat_baij_mult_version version - indicate the version of the matrix-vector product to use (0 often indicates using BLAS) 284967b8a455SSatish Balay - -mat_use_hash_table <fact> - set hash table factor 28500bad9183SKris Buschelman 28510bad9183SKris Buschelman Level: beginner 28520cd7f59aSBarry Smith 285311a5261eSBarry Smith Note: 28545e0ad47dSPierre Jolivet `MatSetOption(A, MAT_STRUCTURE_ONLY, PETSC_TRUE)` may be called for this matrix type. In this no 285511a5261eSBarry Smith space is allocated for the nonzero entries and any entries passed with `MatSetValues()` are ignored 28560bad9183SKris Buschelman 28575e0ad47dSPierre Jolivet .seealso: `Mat`, `MATBAIJ`, `MATSEQBAIJ`, `MatCreateBAIJ` 28580bad9183SKris Buschelman M*/ 28590bad9183SKris Buschelman 2860cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIBAIJ_MPIBSTRM(Mat, MatType, MatReuse, Mat *); 2861c0cdd4a1SDahai Guo 2862d71ae5a4SJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatCreate_MPIBAIJ(Mat B) 2863d71ae5a4SJacob Faibussowitsch { 2864273d9f13SBarry Smith Mat_MPIBAIJ *b; 286594ae4db5SBarry Smith PetscBool flg = PETSC_FALSE; 2866273d9f13SBarry Smith 2867273d9f13SBarry Smith PetscFunctionBegin; 28684dfa11a4SJacob Faibussowitsch PetscCall(PetscNew(&b)); 286982502324SSatish Balay B->data = (void *)b; 2870aea10558SJacob Faibussowitsch B->ops[0] = MatOps_Values; 2871273d9f13SBarry Smith B->assembled = PETSC_FALSE; 2872273d9f13SBarry Smith 2873273d9f13SBarry Smith B->insertmode = NOT_SET_VALUES; 28749566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)B), &b->rank)); 28759566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)B), &b->size)); 2876273d9f13SBarry Smith 2877273d9f13SBarry Smith /* build local table of row and column ownerships */ 28789566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(b->size + 1, &b->rangebs)); 2879273d9f13SBarry Smith 2880273d9f13SBarry Smith /* build cache for off array entries formed */ 28819566063dSJacob Faibussowitsch PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)B), 1, &B->stash)); 288226fbe8dcSKarl Rupp 2883273d9f13SBarry Smith b->donotstash = PETSC_FALSE; 28840298fd71SBarry Smith b->colmap = NULL; 28850298fd71SBarry Smith b->garray = NULL; 2886273d9f13SBarry Smith b->roworiented = PETSC_TRUE; 2887273d9f13SBarry Smith 2888273d9f13SBarry Smith /* stuff used in block assembly */ 2889f4259b30SLisandro Dalcin b->barray = NULL; 2890273d9f13SBarry Smith 2891273d9f13SBarry Smith /* stuff used for matrix vector multiply */ 2892f4259b30SLisandro Dalcin b->lvec = NULL; 2893f4259b30SLisandro Dalcin b->Mvctx = NULL; 2894273d9f13SBarry Smith 2895273d9f13SBarry Smith /* stuff for MatGetRow() */ 2896f4259b30SLisandro Dalcin b->rowindices = NULL; 2897f4259b30SLisandro Dalcin b->rowvalues = NULL; 2898273d9f13SBarry Smith b->getrowactive = PETSC_FALSE; 2899273d9f13SBarry Smith 2900273d9f13SBarry Smith /* hash table stuff */ 2901f4259b30SLisandro Dalcin b->ht = NULL; 2902f4259b30SLisandro Dalcin b->hd = NULL; 2903273d9f13SBarry Smith b->ht_size = 0; 2904273d9f13SBarry Smith b->ht_flag = PETSC_FALSE; 2905273d9f13SBarry Smith b->ht_fact = 0; 2906273d9f13SBarry Smith b->ht_total_ct = 0; 2907273d9f13SBarry Smith b->ht_insert_ct = 0; 2908273d9f13SBarry Smith 29097dae84e0SHong Zhang /* stuff for MatCreateSubMatrices_MPIBAIJ_local() */ 29107a868f3eSHong Zhang b->ijonly = PETSC_FALSE; 29117a868f3eSHong Zhang 29129566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpibaij_mpiadj_C", MatConvert_MPIBAIJ_MPIAdj)); 29139566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpibaij_mpiaij_C", MatConvert_MPIBAIJ_MPIAIJ)); 29149566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpibaij_mpisbaij_C", MatConvert_MPIBAIJ_MPISBAIJ)); 29157ea3e4caSstefano_zampini #if defined(PETSC_HAVE_HYPRE) 29169566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpibaij_hypre_C", MatConvert_AIJ_HYPRE)); 29177ea3e4caSstefano_zampini #endif 29189566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatStoreValues_C", MatStoreValues_MPIBAIJ)); 29199566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatRetrieveValues_C", MatRetrieveValues_MPIBAIJ)); 29209566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMPIBAIJSetPreallocation_C", MatMPIBAIJSetPreallocation_MPIBAIJ)); 29219566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMPIBAIJSetPreallocationCSR_C", MatMPIBAIJSetPreallocationCSR_MPIBAIJ)); 29229566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatDiagonalScaleLocal_C", MatDiagonalScaleLocal_MPIBAIJ)); 29239566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatSetHashTableFactor_C", MatSetHashTableFactor_MPIBAIJ)); 29249566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpibaij_is_C", MatConvert_XAIJ_IS)); 29259566063dSJacob Faibussowitsch PetscCall(PetscObjectChangeTypeName((PetscObject)B, MATMPIBAIJ)); 292694ae4db5SBarry Smith 2927d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)B), NULL, "Options for loading MPIBAIJ matrix 1", "Mat"); 29289566063dSJacob Faibussowitsch PetscCall(PetscOptionsName("-mat_use_hash_table", "Use hash table to save time in constructing matrix", "MatSetOption", &flg)); 292994ae4db5SBarry Smith if (flg) { 293094ae4db5SBarry Smith PetscReal fact = 1.39; 29319566063dSJacob Faibussowitsch PetscCall(MatSetOption(B, MAT_USE_HASH_TABLE, PETSC_TRUE)); 29329566063dSJacob Faibussowitsch PetscCall(PetscOptionsReal("-mat_use_hash_table", "Use hash table factor", "MatMPIBAIJSetHashTableFactor", fact, &fact, NULL)); 293394ae4db5SBarry Smith if (fact <= 1.0) fact = 1.39; 29349566063dSJacob Faibussowitsch PetscCall(MatMPIBAIJSetHashTableFactor(B, fact)); 29359566063dSJacob Faibussowitsch PetscCall(PetscInfo(B, "Hash table Factor used %5.2g\n", (double)fact)); 293694ae4db5SBarry Smith } 2937d0609cedSBarry Smith PetscOptionsEnd(); 29383ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2939273d9f13SBarry Smith } 2940273d9f13SBarry Smith 29412920cce0SJacob Faibussowitsch // PetscClangLinter pragma disable: -fdoc-section-header-unknown 2942209238afSKris Buschelman /*MC 2943002d173eSKris Buschelman MATBAIJ - MATBAIJ = "baij" - A matrix type to be used for block sparse matrices. 2944209238afSKris Buschelman 294511a5261eSBarry Smith This matrix type is identical to `MATSEQBAIJ` when constructed with a single process communicator, 294611a5261eSBarry Smith and `MATMPIBAIJ` otherwise. 2947209238afSKris Buschelman 2948209238afSKris Buschelman Options Database Keys: 294911a5261eSBarry Smith . -mat_type baij - sets the matrix type to `MATBAIJ` during a call to `MatSetFromOptions()` 2950209238afSKris Buschelman 2951209238afSKris Buschelman Level: beginner 2952209238afSKris Buschelman 295367be906fSBarry Smith .seealso: `Mat`, `MatCreateBAIJ()`, `MATSEQBAIJ`, `MATMPIBAIJ`, `MatMPIBAIJSetPreallocation()`, `MatMPIBAIJSetPreallocationCSR()` 2954209238afSKris Buschelman M*/ 2955209238afSKris Buschelman 29565d83a8b1SBarry Smith /*@ 295711a5261eSBarry Smith MatMPIBAIJSetPreallocation - Allocates memory for a sparse parallel matrix in `MATMPIBAIJ` format 295867be906fSBarry Smith (block compressed row). 2959273d9f13SBarry Smith 2960c3339decSBarry Smith Collective 2961273d9f13SBarry Smith 2962273d9f13SBarry Smith Input Parameters: 29631c4f3114SJed Brown + B - the matrix 296411a5261eSBarry Smith . bs - size of block, the blocks are ALWAYS square. One can use `MatSetBlockSizes()` to set a different row and column blocksize but the row 296567be906fSBarry Smith blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with `MatCreateVecs()` 2966273d9f13SBarry Smith . d_nz - number of block nonzeros per block row in diagonal portion of local 2967273d9f13SBarry Smith submatrix (same for all local rows) 2968273d9f13SBarry Smith . d_nnz - array containing the number of block nonzeros in the various block rows 2969273d9f13SBarry Smith of the in diagonal portion of the local (possibly different for each block 297067be906fSBarry Smith row) or `NULL`. If you plan to factor the matrix you must leave room for the diagonal entry and 297195742e49SBarry Smith set it even if it is zero. 2972273d9f13SBarry Smith . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 2973273d9f13SBarry Smith submatrix (same for all local rows). 2974273d9f13SBarry Smith - o_nnz - array containing the number of nonzeros in the various block rows of the 2975273d9f13SBarry Smith off-diagonal portion of the local submatrix (possibly different for 297667be906fSBarry Smith each block row) or `NULL`. 2977273d9f13SBarry Smith 297849a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 2979273d9f13SBarry Smith 2980273d9f13SBarry Smith Options Database Keys: 29818c07d4e3SBarry Smith + -mat_block_size - size of the blocks to use 298267b8a455SSatish Balay - -mat_use_hash_table <fact> - set hash table factor 2983273d9f13SBarry Smith 298467be906fSBarry Smith Level: intermediate 298567be906fSBarry Smith 2986273d9f13SBarry Smith Notes: 298767be906fSBarry Smith For good matrix assembly performance 298867be906fSBarry Smith the user should preallocate the matrix storage by setting the parameters 298967be906fSBarry Smith `d_nz` (or `d_nnz`) and `o_nz` (or `o_nnz`). By setting these parameters accurately, 299067be906fSBarry Smith performance can be increased by more than a factor of 50. 299167be906fSBarry Smith 299211a5261eSBarry Smith If `PETSC_DECIDE` or `PETSC_DETERMINE` is used for a particular argument on one processor 2993273d9f13SBarry Smith than it must be used on all processors that share the object for that argument. 2994273d9f13SBarry Smith 2995273d9f13SBarry Smith Storage Information: 2996273d9f13SBarry Smith For a square global matrix we define each processor's diagonal portion 2997273d9f13SBarry Smith to be its local rows and the corresponding columns (a square submatrix); 2998273d9f13SBarry Smith each processor's off-diagonal portion encompasses the remainder of the 2999273d9f13SBarry Smith local matrix (a rectangular submatrix). 3000273d9f13SBarry Smith 3001273d9f13SBarry Smith The user can specify preallocated storage for the diagonal part of 300267be906fSBarry Smith the local submatrix with either `d_nz` or `d_nnz` (not both). Set 300367be906fSBarry Smith `d_nz` = `PETSC_DEFAULT` and `d_nnz` = `NULL` for PETSc to control dynamic 3004273d9f13SBarry Smith memory allocation. Likewise, specify preallocated storage for the 300567be906fSBarry Smith off-diagonal part of the local submatrix with `o_nz` or `o_nnz` (not both). 3006273d9f13SBarry Smith 3007273d9f13SBarry Smith Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 3008273d9f13SBarry Smith the figure below we depict these three local rows and all columns (0-11). 3009273d9f13SBarry Smith 3010273d9f13SBarry Smith .vb 3011273d9f13SBarry Smith 0 1 2 3 4 5 6 7 8 9 10 11 3012a4b1a0f6SJed Brown -------------------------- 3013273d9f13SBarry Smith row 3 |o o o d d d o o o o o o 3014273d9f13SBarry Smith row 4 |o o o d d d o o o o o o 3015273d9f13SBarry Smith row 5 |o o o d d d o o o o o o 3016a4b1a0f6SJed Brown -------------------------- 3017273d9f13SBarry Smith .ve 3018273d9f13SBarry Smith 3019273d9f13SBarry Smith Thus, any entries in the d locations are stored in the d (diagonal) 3020273d9f13SBarry Smith submatrix, and any entries in the o locations are stored in the 3021273d9f13SBarry Smith o (off-diagonal) submatrix. Note that the d and the o submatrices are 302211a5261eSBarry Smith stored simply in the `MATSEQBAIJ` format for compressed row storage. 3023273d9f13SBarry Smith 302467be906fSBarry Smith Now `d_nz` should indicate the number of block nonzeros per row in the d matrix, 302567be906fSBarry Smith and `o_nz` should indicate the number of block nonzeros per row in the o matrix. 3026273d9f13SBarry Smith In general, for PDE problems in which most nonzeros are near the diagonal, 302720f4b53cSBarry Smith one expects `d_nz` >> `o_nz`. 3028273d9f13SBarry Smith 302911a5261eSBarry Smith You can call `MatGetInfo()` to get information on how effective the preallocation was; 3030aa95bbe8SBarry Smith for example the fields mallocs,nz_allocated,nz_used,nz_unneeded; 303167be906fSBarry Smith You can also run with the option `-info` and look for messages with the string 3032aa95bbe8SBarry Smith malloc in them to see if additional memory allocation was needed. 3033aa95bbe8SBarry Smith 303467be906fSBarry Smith .seealso: `Mat`, `MATMPIBAIJ`, `MatCreate()`, `MatCreateSeqBAIJ()`, `MatSetValues()`, `MatCreateBAIJ()`, `MatMPIBAIJSetPreallocationCSR()`, `PetscSplitOwnership()` 3035273d9f13SBarry Smith @*/ 3036d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIBAIJSetPreallocation(Mat B, PetscInt bs, PetscInt d_nz, const PetscInt d_nnz[], PetscInt o_nz, const PetscInt o_nnz[]) 3037d71ae5a4SJacob Faibussowitsch { 3038273d9f13SBarry Smith PetscFunctionBegin; 30396ba663aaSJed Brown PetscValidHeaderSpecific(B, MAT_CLASSID, 1); 30406ba663aaSJed Brown PetscValidType(B, 1); 30416ba663aaSJed Brown PetscValidLogicalCollectiveInt(B, bs, 2); 3042cac4c232SBarry Smith PetscTryMethod(B, "MatMPIBAIJSetPreallocation_C", (Mat, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[]), (B, bs, d_nz, d_nnz, o_nz, o_nnz)); 30433ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3044273d9f13SBarry Smith } 3045273d9f13SBarry Smith 30462920cce0SJacob Faibussowitsch // PetscClangLinter pragma disable: -fdoc-section-header-unknown 30475d83a8b1SBarry Smith /*@ 304811a5261eSBarry Smith MatCreateBAIJ - Creates a sparse parallel matrix in `MATBAIJ` format 304967be906fSBarry Smith (block compressed row). 305079bdfe76SSatish Balay 3051d083f849SBarry Smith Collective 3052db81eaa0SLois Curfman McInnes 305379bdfe76SSatish Balay Input Parameters: 3054db81eaa0SLois Curfman McInnes + comm - MPI communicator 305511a5261eSBarry Smith . bs - size of block, the blocks are ALWAYS square. One can use `MatSetBlockSizes()` to set a different row and column blocksize but the row 305611a5261eSBarry Smith blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with `MatCreateVecs()` 305711a5261eSBarry Smith . m - number of local rows (or `PETSC_DECIDE` to have calculated if M is given) 305892e8d321SLois Curfman McInnes This value should be the same as the local size used in creating the 305992e8d321SLois Curfman McInnes y vector for the matrix-vector product y = Ax. 306011a5261eSBarry Smith . n - number of local columns (or `PETSC_DECIDE` to have calculated if N is given) 306192e8d321SLois Curfman McInnes This value should be the same as the local size used in creating the 306292e8d321SLois Curfman McInnes x vector for the matrix-vector product y = Ax. 306311a5261eSBarry Smith . M - number of global rows (or `PETSC_DETERMINE` to have calculated if m is given) 306411a5261eSBarry Smith . N - number of global columns (or `PETSC_DETERMINE` to have calculated if n is given) 306547a75d0bSBarry Smith . d_nz - number of nonzero blocks per block row in diagonal portion of local 306679bdfe76SSatish Balay submatrix (same for all local rows) 306747a75d0bSBarry Smith . d_nnz - array containing the number of nonzero blocks in the various block rows 306892e8d321SLois Curfman McInnes of the in diagonal portion of the local (possibly different for each block 30690298fd71SBarry Smith row) or NULL. If you plan to factor the matrix you must leave room for the diagonal entry 307095742e49SBarry Smith and set it even if it is zero. 307147a75d0bSBarry Smith . o_nz - number of nonzero blocks per block row in the off-diagonal portion of local 307279bdfe76SSatish Balay submatrix (same for all local rows). 307347a75d0bSBarry Smith - o_nnz - array containing the number of nonzero blocks in the various block rows of the 307492e8d321SLois Curfman McInnes off-diagonal portion of the local submatrix (possibly different for 30750298fd71SBarry Smith each block row) or NULL. 307679bdfe76SSatish Balay 307779bdfe76SSatish Balay Output Parameter: 307879bdfe76SSatish Balay . A - the matrix 307979bdfe76SSatish Balay 3080db81eaa0SLois Curfman McInnes Options Database Keys: 30818c07d4e3SBarry Smith + -mat_block_size - size of the blocks to use 308267b8a455SSatish Balay - -mat_use_hash_table <fact> - set hash table factor 30833ffaccefSLois Curfman McInnes 308467be906fSBarry Smith Level: intermediate 308567be906fSBarry Smith 308667be906fSBarry Smith Notes: 308777433607SBarry Smith It is recommended that one use `MatCreateFromOptions()` or the `MatCreate()`, `MatSetType()` and/or `MatSetFromOptions()`, 308877433607SBarry Smith MatXXXXSetPreallocation() paradigm instead of this routine directly. 308977433607SBarry Smith [MatXXXXSetPreallocation() is, for example, `MatSeqBAIJSetPreallocation()`] 309077433607SBarry Smith 309167be906fSBarry Smith For good matrix assembly performance 309267be906fSBarry Smith the user should preallocate the matrix storage by setting the parameters 309367be906fSBarry Smith `d_nz` (or `d_nnz`) and `o_nz` (or `o_nnz`). By setting these parameters accurately, 309467be906fSBarry Smith performance can be increased by more than a factor of 50. 309567be906fSBarry Smith 309649a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 309749a6f317SBarry Smith 309847a75d0bSBarry Smith A nonzero block is any block that as 1 or more nonzeros in it 309947a75d0bSBarry Smith 310079bdfe76SSatish Balay The user MUST specify either the local or global matrix dimensions 310179bdfe76SSatish Balay (possibly both). 310279bdfe76SSatish Balay 310311a5261eSBarry Smith If `PETSC_DECIDE` or `PETSC_DETERMINE` is used for a particular argument on one processor 3104be79a94dSBarry Smith than it must be used on all processors that share the object for that argument. 3105be79a94dSBarry Smith 3106727bdf9bSBarry Smith If `m` and `n` are not `PETSC_DECIDE`, then the values determine the `PetscLayout` of the matrix and the ranges returned by 3107727bdf9bSBarry Smith `MatGetOwnershipRange()`, `MatGetOwnershipRanges()`, `MatGetOwnershipRangeColumn()`, and `MatGetOwnershipRangesColumn()`. 3108727bdf9bSBarry Smith 310979bdfe76SSatish Balay Storage Information: 311079bdfe76SSatish Balay For a square global matrix we define each processor's diagonal portion 311179bdfe76SSatish Balay to be its local rows and the corresponding columns (a square submatrix); 311279bdfe76SSatish Balay each processor's off-diagonal portion encompasses the remainder of the 311379bdfe76SSatish Balay local matrix (a rectangular submatrix). 311479bdfe76SSatish Balay 311579bdfe76SSatish Balay The user can specify preallocated storage for the diagonal part of 311679bdfe76SSatish Balay the local submatrix with either d_nz or d_nnz (not both). Set 311767be906fSBarry Smith `d_nz` = `PETSC_DEFAULT` and `d_nnz` = `NULL` for PETSc to control dynamic 311879bdfe76SSatish Balay memory allocation. Likewise, specify preallocated storage for the 311967be906fSBarry Smith off-diagonal part of the local submatrix with `o_nz` or `o_nnz` (not both). 312079bdfe76SSatish Balay 312179bdfe76SSatish Balay Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 312279bdfe76SSatish Balay the figure below we depict these three local rows and all columns (0-11). 312379bdfe76SSatish Balay 3124db81eaa0SLois Curfman McInnes .vb 3125db81eaa0SLois Curfman McInnes 0 1 2 3 4 5 6 7 8 9 10 11 3126a4b1a0f6SJed Brown -------------------------- 3127db81eaa0SLois Curfman McInnes row 3 |o o o d d d o o o o o o 3128db81eaa0SLois Curfman McInnes row 4 |o o o d d d o o o o o o 3129db81eaa0SLois Curfman McInnes row 5 |o o o d d d o o o o o o 3130a4b1a0f6SJed Brown -------------------------- 3131db81eaa0SLois Curfman McInnes .ve 313279bdfe76SSatish Balay 313379bdfe76SSatish Balay Thus, any entries in the d locations are stored in the d (diagonal) 313479bdfe76SSatish Balay submatrix, and any entries in the o locations are stored in the 313579bdfe76SSatish Balay o (off-diagonal) submatrix. Note that the d and the o submatrices are 313611a5261eSBarry Smith stored simply in the `MATSEQBAIJ` format for compressed row storage. 313779bdfe76SSatish Balay 313867be906fSBarry Smith Now `d_nz` should indicate the number of block nonzeros per row in the d matrix, 313967be906fSBarry Smith and `o_nz` should indicate the number of block nonzeros per row in the o matrix. 314079bdfe76SSatish Balay In general, for PDE problems in which most nonzeros are near the diagonal, 314120f4b53cSBarry Smith one expects `d_nz` >> `o_nz`. 314279bdfe76SSatish Balay 3143727bdf9bSBarry Smith .seealso: `Mat`, `MatCreate()`, `MatCreateSeqBAIJ()`, `MatSetValues()`, `MatMPIBAIJSetPreallocation()`, `MatMPIBAIJSetPreallocationCSR()`, 3144727bdf9bSBarry Smith `MatGetOwnershipRange()`, `MatGetOwnershipRanges()`, `MatGetOwnershipRangeColumn()`, `MatGetOwnershipRangesColumn()`, `PetscLayout` 314579bdfe76SSatish Balay @*/ 3146d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateBAIJ(MPI_Comm comm, PetscInt bs, PetscInt m, PetscInt n, PetscInt M, PetscInt N, PetscInt d_nz, const PetscInt d_nnz[], PetscInt o_nz, const PetscInt o_nnz[], Mat *A) 3147d71ae5a4SJacob Faibussowitsch { 3148b24ad042SBarry Smith PetscMPIInt size; 314979bdfe76SSatish Balay 3150d64ed03dSBarry Smith PetscFunctionBegin; 31519566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, A)); 31529566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*A, m, n, M, N)); 31539566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 3154273d9f13SBarry Smith if (size > 1) { 31559566063dSJacob Faibussowitsch PetscCall(MatSetType(*A, MATMPIBAIJ)); 31569566063dSJacob Faibussowitsch PetscCall(MatMPIBAIJSetPreallocation(*A, bs, d_nz, d_nnz, o_nz, o_nnz)); 3157273d9f13SBarry Smith } else { 31589566063dSJacob Faibussowitsch PetscCall(MatSetType(*A, MATSEQBAIJ)); 31599566063dSJacob Faibussowitsch PetscCall(MatSeqBAIJSetPreallocation(*A, bs, d_nz, d_nnz)); 31603914022bSBarry Smith } 31613ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 316279bdfe76SSatish Balay } 3163026e39d0SSatish Balay 3164d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatDuplicate_MPIBAIJ(Mat matin, MatDuplicateOption cpvalues, Mat *newmat) 3165d71ae5a4SJacob Faibussowitsch { 31660ac07820SSatish Balay Mat mat; 31670ac07820SSatish Balay Mat_MPIBAIJ *a, *oldmat = (Mat_MPIBAIJ *)matin->data; 3168b24ad042SBarry Smith PetscInt len = 0; 31690ac07820SSatish Balay 3170d64ed03dSBarry Smith PetscFunctionBegin; 3171f4259b30SLisandro Dalcin *newmat = NULL; 31729566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)matin), &mat)); 31739566063dSJacob Faibussowitsch PetscCall(MatSetSizes(mat, matin->rmap->n, matin->cmap->n, matin->rmap->N, matin->cmap->N)); 31749566063dSJacob Faibussowitsch PetscCall(MatSetType(mat, ((PetscObject)matin)->type_name)); 31757fff6886SHong Zhang 3176420957c1SBarry Smith PetscCall(PetscLayoutReference(matin->rmap, &mat->rmap)); 3177420957c1SBarry Smith PetscCall(PetscLayoutReference(matin->cmap, &mat->cmap)); 3178420957c1SBarry Smith if (matin->hash_active) { 3179420957c1SBarry Smith PetscCall(MatSetUp(mat)); 3180420957c1SBarry Smith } else { 3181d5f3da31SBarry Smith mat->factortype = matin->factortype; 3182273d9f13SBarry Smith mat->preallocated = PETSC_TRUE; 31830ac07820SSatish Balay mat->assembled = PETSC_TRUE; 31847fff6886SHong Zhang mat->insertmode = NOT_SET_VALUES; 31857fff6886SHong Zhang 3186273d9f13SBarry Smith a = (Mat_MPIBAIJ *)mat->data; 3187d0f46423SBarry Smith mat->rmap->bs = matin->rmap->bs; 31880ac07820SSatish Balay a->bs2 = oldmat->bs2; 31890ac07820SSatish Balay a->mbs = oldmat->mbs; 31900ac07820SSatish Balay a->nbs = oldmat->nbs; 31910ac07820SSatish Balay a->Mbs = oldmat->Mbs; 31920ac07820SSatish Balay a->Nbs = oldmat->Nbs; 31930ac07820SSatish Balay 31940ac07820SSatish Balay a->size = oldmat->size; 31950ac07820SSatish Balay a->rank = oldmat->rank; 3196aef5e8e0SSatish Balay a->donotstash = oldmat->donotstash; 3197aef5e8e0SSatish Balay a->roworiented = oldmat->roworiented; 3198f4259b30SLisandro Dalcin a->rowindices = NULL; 3199f4259b30SLisandro Dalcin a->rowvalues = NULL; 32000ac07820SSatish Balay a->getrowactive = PETSC_FALSE; 3201f4259b30SLisandro Dalcin a->barray = NULL; 3202899cda47SBarry Smith a->rstartbs = oldmat->rstartbs; 3203899cda47SBarry Smith a->rendbs = oldmat->rendbs; 3204899cda47SBarry Smith a->cstartbs = oldmat->cstartbs; 3205899cda47SBarry Smith a->cendbs = oldmat->cendbs; 32060ac07820SSatish Balay 3207133cdb44SSatish Balay /* hash table stuff */ 3208f4259b30SLisandro Dalcin a->ht = NULL; 3209f4259b30SLisandro Dalcin a->hd = NULL; 3210133cdb44SSatish Balay a->ht_size = 0; 3211133cdb44SSatish Balay a->ht_flag = oldmat->ht_flag; 321225fdafccSSatish Balay a->ht_fact = oldmat->ht_fact; 3213133cdb44SSatish Balay a->ht_total_ct = 0; 3214133cdb44SSatish Balay a->ht_insert_ct = 0; 3215133cdb44SSatish Balay 32169566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(a->rangebs, oldmat->rangebs, a->size + 1)); 32170ac07820SSatish Balay if (oldmat->colmap) { 3218aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 3219eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIDuplicate(oldmat->colmap, &a->colmap)); 322048e59246SSatish Balay #else 32219566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(a->Nbs, &a->colmap)); 32229566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(a->colmap, oldmat->colmap, a->Nbs)); 322348e59246SSatish Balay #endif 3224f4259b30SLisandro Dalcin } else a->colmap = NULL; 32254beb1cfeSHong Zhang 3226f4f49eeaSPierre Jolivet if (oldmat->garray && (len = ((Mat_SeqBAIJ *)oldmat->B->data)->nbs)) { 32279566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(len, &a->garray)); 32289566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(a->garray, oldmat->garray, len)); 3229f4259b30SLisandro Dalcin } else a->garray = NULL; 32300ac07820SSatish Balay 32319566063dSJacob Faibussowitsch PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)matin), matin->rmap->bs, &mat->bstash)); 32329566063dSJacob Faibussowitsch PetscCall(VecDuplicate(oldmat->lvec, &a->lvec)); 32339566063dSJacob Faibussowitsch PetscCall(VecScatterCopy(oldmat->Mvctx, &a->Mvctx)); 32347fff6886SHong Zhang 32359566063dSJacob Faibussowitsch PetscCall(MatDuplicate(oldmat->A, cpvalues, &a->A)); 32369566063dSJacob Faibussowitsch PetscCall(MatDuplicate(oldmat->B, cpvalues, &a->B)); 3237420957c1SBarry Smith } 32389566063dSJacob Faibussowitsch PetscCall(PetscFunctionListDuplicate(((PetscObject)matin)->qlist, &((PetscObject)mat)->qlist)); 32390ac07820SSatish Balay *newmat = mat; 32403ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 32410ac07820SSatish Balay } 324257b952d6SSatish Balay 3243618cc2edSLisandro Dalcin /* Used for both MPIBAIJ and MPISBAIJ matrices */ 3244d71ae5a4SJacob Faibussowitsch PetscErrorCode MatLoad_MPIBAIJ_Binary(Mat mat, PetscViewer viewer) 3245d71ae5a4SJacob Faibussowitsch { 3246b51a4376SLisandro Dalcin PetscInt header[4], M, N, nz, bs, m, n, mbs, nbs, rows, cols, sum, i, j, k; 3247b51a4376SLisandro Dalcin PetscInt *rowidxs, *colidxs, rs, cs, ce; 3248b51a4376SLisandro Dalcin PetscScalar *matvals; 3249b51a4376SLisandro Dalcin 3250b51a4376SLisandro Dalcin PetscFunctionBegin; 32519566063dSJacob Faibussowitsch PetscCall(PetscViewerSetUp(viewer)); 3252b51a4376SLisandro Dalcin 3253b51a4376SLisandro Dalcin /* read in matrix header */ 32549566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryRead(viewer, header, 4, NULL, PETSC_INT)); 32555f80ce2aSJacob Faibussowitsch PetscCheck(header[0] == MAT_FILE_CLASSID, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Not a matrix object in file"); 32569371c9d4SSatish Balay M = header[1]; 32579371c9d4SSatish Balay N = header[2]; 32589371c9d4SSatish Balay nz = header[3]; 32595f80ce2aSJacob Faibussowitsch PetscCheck(M >= 0, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Matrix row size (%" PetscInt_FMT ") in file is negative", M); 32605f80ce2aSJacob Faibussowitsch PetscCheck(N >= 0, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Matrix column size (%" PetscInt_FMT ") in file is negative", N); 32615f80ce2aSJacob Faibussowitsch PetscCheck(nz >= 0, PETSC_COMM_SELF, PETSC_ERR_FILE_UNEXPECTED, "Matrix stored in special format on disk, cannot load as MPIBAIJ"); 3262b51a4376SLisandro Dalcin 3263b51a4376SLisandro Dalcin /* set block sizes from the viewer's .info file */ 32649566063dSJacob Faibussowitsch PetscCall(MatLoad_Binary_BlockSizes(mat, viewer)); 3265618cc2edSLisandro Dalcin /* set local sizes if not set already */ 3266618cc2edSLisandro Dalcin if (mat->rmap->n < 0 && M == N) mat->rmap->n = mat->cmap->n; 3267618cc2edSLisandro Dalcin if (mat->cmap->n < 0 && M == N) mat->cmap->n = mat->rmap->n; 3268b51a4376SLisandro Dalcin /* set global sizes if not set already */ 3269b51a4376SLisandro Dalcin if (mat->rmap->N < 0) mat->rmap->N = M; 3270b51a4376SLisandro Dalcin if (mat->cmap->N < 0) mat->cmap->N = N; 32719566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(mat->rmap)); 32729566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(mat->cmap)); 3273b51a4376SLisandro Dalcin 3274b51a4376SLisandro Dalcin /* check if the matrix sizes are correct */ 32759566063dSJacob Faibussowitsch PetscCall(MatGetSize(mat, &rows, &cols)); 32765f80ce2aSJacob Faibussowitsch PetscCheck(M == rows && N == cols, PETSC_COMM_SELF, PETSC_ERR_FILE_UNEXPECTED, "Matrix in file of different sizes (%" PetscInt_FMT ", %" PetscInt_FMT ") than the input matrix (%" PetscInt_FMT ", %" PetscInt_FMT ")", M, N, rows, cols); 32779566063dSJacob Faibussowitsch PetscCall(MatGetBlockSize(mat, &bs)); 32789566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(mat, &m, &n)); 32799566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetRange(mat->rmap, &rs, NULL)); 32809566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetRange(mat->cmap, &cs, &ce)); 32819371c9d4SSatish Balay mbs = m / bs; 32829371c9d4SSatish Balay nbs = n / bs; 3283b51a4376SLisandro Dalcin 3284b51a4376SLisandro Dalcin /* read in row lengths and build row indices */ 32859566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m + 1, &rowidxs)); 32869566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryReadAll(viewer, rowidxs + 1, m, PETSC_DECIDE, M, PETSC_INT)); 32879371c9d4SSatish Balay rowidxs[0] = 0; 32889371c9d4SSatish Balay for (i = 0; i < m; i++) rowidxs[i + 1] += rowidxs[i]; 3289462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&rowidxs[m], &sum, 1, MPIU_INT, MPI_SUM, PetscObjectComm((PetscObject)viewer))); 32905f80ce2aSJacob Faibussowitsch PetscCheck(sum == nz, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Inconsistent matrix data in file: nonzeros = %" PetscInt_FMT ", sum-row-lengths = %" PetscInt_FMT, nz, sum); 3291b51a4376SLisandro Dalcin 3292b51a4376SLisandro Dalcin /* read in column indices and matrix values */ 32939566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(rowidxs[m], &colidxs, rowidxs[m], &matvals)); 32949566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryReadAll(viewer, colidxs, rowidxs[m], PETSC_DETERMINE, PETSC_DETERMINE, PETSC_INT)); 32959566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryReadAll(viewer, matvals, rowidxs[m], PETSC_DETERMINE, PETSC_DETERMINE, PETSC_SCALAR)); 3296b51a4376SLisandro Dalcin 3297b51a4376SLisandro Dalcin { /* preallocate matrix storage */ 3298b51a4376SLisandro Dalcin PetscBT bt; /* helper bit set to count diagonal nonzeros */ 3299b51a4376SLisandro Dalcin PetscHSetI ht; /* helper hash set to count off-diagonal nonzeros */ 3300618cc2edSLisandro Dalcin PetscBool sbaij, done; 3301b51a4376SLisandro Dalcin PetscInt *d_nnz, *o_nnz; 3302b51a4376SLisandro Dalcin 33039566063dSJacob Faibussowitsch PetscCall(PetscBTCreate(nbs, &bt)); 33049566063dSJacob Faibussowitsch PetscCall(PetscHSetICreate(&ht)); 33059566063dSJacob Faibussowitsch PetscCall(PetscCalloc2(mbs, &d_nnz, mbs, &o_nnz)); 33069566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)mat, MATMPISBAIJ, &sbaij)); 3307b51a4376SLisandro Dalcin for (i = 0; i < mbs; i++) { 33089566063dSJacob Faibussowitsch PetscCall(PetscBTMemzero(nbs, bt)); 33099566063dSJacob Faibussowitsch PetscCall(PetscHSetIClear(ht)); 3310618cc2edSLisandro Dalcin for (k = 0; k < bs; k++) { 3311618cc2edSLisandro Dalcin PetscInt row = bs * i + k; 3312618cc2edSLisandro Dalcin for (j = rowidxs[row]; j < rowidxs[row + 1]; j++) { 3313618cc2edSLisandro Dalcin PetscInt col = colidxs[j]; 3314618cc2edSLisandro Dalcin if (!sbaij || col >= row) { 3315618cc2edSLisandro Dalcin if (col >= cs && col < ce) { 3316618cc2edSLisandro Dalcin if (!PetscBTLookupSet(bt, (col - cs) / bs)) d_nnz[i]++; 3317b51a4376SLisandro Dalcin } else { 33189566063dSJacob Faibussowitsch PetscCall(PetscHSetIQueryAdd(ht, col / bs, &done)); 3319b51a4376SLisandro Dalcin if (done) o_nnz[i]++; 3320b51a4376SLisandro Dalcin } 3321b51a4376SLisandro Dalcin } 3322618cc2edSLisandro Dalcin } 3323618cc2edSLisandro Dalcin } 3324618cc2edSLisandro Dalcin } 33259566063dSJacob Faibussowitsch PetscCall(PetscBTDestroy(&bt)); 33269566063dSJacob Faibussowitsch PetscCall(PetscHSetIDestroy(&ht)); 33279566063dSJacob Faibussowitsch PetscCall(MatMPIBAIJSetPreallocation(mat, bs, 0, d_nnz, 0, o_nnz)); 33289566063dSJacob Faibussowitsch PetscCall(MatMPISBAIJSetPreallocation(mat, bs, 0, d_nnz, 0, o_nnz)); 33299566063dSJacob Faibussowitsch PetscCall(PetscFree2(d_nnz, o_nnz)); 3330b51a4376SLisandro Dalcin } 3331b51a4376SLisandro Dalcin 3332b51a4376SLisandro Dalcin /* store matrix values */ 3333b51a4376SLisandro Dalcin for (i = 0; i < m; i++) { 3334b51a4376SLisandro Dalcin PetscInt row = rs + i, s = rowidxs[i], e = rowidxs[i + 1]; 33359927e4dfSBarry Smith PetscUseTypeMethod(mat, setvalues, 1, &row, e - s, colidxs + s, matvals + s, INSERT_VALUES); 3336b51a4376SLisandro Dalcin } 3337b51a4376SLisandro Dalcin 33389566063dSJacob Faibussowitsch PetscCall(PetscFree(rowidxs)); 33399566063dSJacob Faibussowitsch PetscCall(PetscFree2(colidxs, matvals)); 33409566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(mat, MAT_FINAL_ASSEMBLY)); 33419566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(mat, MAT_FINAL_ASSEMBLY)); 33423ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3343b51a4376SLisandro Dalcin } 3344b51a4376SLisandro Dalcin 3345d71ae5a4SJacob Faibussowitsch PetscErrorCode MatLoad_MPIBAIJ(Mat mat, PetscViewer viewer) 3346d71ae5a4SJacob Faibussowitsch { 33477f489da9SVaclav Hapla PetscBool isbinary; 33484683f7a4SShri Abhyankar 33494683f7a4SShri Abhyankar PetscFunctionBegin; 33509566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary)); 33515f80ce2aSJacob Faibussowitsch PetscCheck(isbinary, PetscObjectComm((PetscObject)viewer), PETSC_ERR_SUP, "Viewer type %s not yet supported for reading %s matrices", ((PetscObject)viewer)->type_name, ((PetscObject)mat)->type_name); 33529566063dSJacob Faibussowitsch PetscCall(MatLoad_MPIBAIJ_Binary(mat, viewer)); 33533ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 33544683f7a4SShri Abhyankar } 33554683f7a4SShri Abhyankar 3356133cdb44SSatish Balay /*@ 335711a5261eSBarry Smith MatMPIBAIJSetHashTableFactor - Sets the factor required to compute the size of the matrices hash table 3358133cdb44SSatish Balay 3359133cdb44SSatish Balay Input Parameters: 3360a2b725a8SWilliam Gropp + mat - the matrix 3361a2b725a8SWilliam Gropp - fact - factor 3362133cdb44SSatish Balay 336311a5261eSBarry Smith Options Database Key: 336411a5261eSBarry Smith . -mat_use_hash_table <fact> - provide the factor 3365fee21e36SBarry Smith 33668c890885SBarry Smith Level: advanced 33678c890885SBarry Smith 336867be906fSBarry Smith .seealso: `Mat`, `MATMPIBAIJ`, `MatSetOption()` 3369133cdb44SSatish Balay @*/ 3370d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIBAIJSetHashTableFactor(Mat mat, PetscReal fact) 3371d71ae5a4SJacob Faibussowitsch { 33725bf65638SKris Buschelman PetscFunctionBegin; 3373cac4c232SBarry Smith PetscTryMethod(mat, "MatSetHashTableFactor_C", (Mat, PetscReal), (mat, fact)); 33743ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 33755bf65638SKris Buschelman } 33765bf65638SKris Buschelman 3377d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetHashTableFactor_MPIBAIJ(Mat mat, PetscReal fact) 3378d71ae5a4SJacob Faibussowitsch { 337925fdafccSSatish Balay Mat_MPIBAIJ *baij; 3380133cdb44SSatish Balay 3381133cdb44SSatish Balay PetscFunctionBegin; 3382133cdb44SSatish Balay baij = (Mat_MPIBAIJ *)mat->data; 3383133cdb44SSatish Balay baij->ht_fact = fact; 33843ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3385133cdb44SSatish Balay } 3386f2a5309cSSatish Balay 3387d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIBAIJGetSeqBAIJ(Mat A, Mat *Ad, Mat *Ao, const PetscInt *colmap[]) 3388d71ae5a4SJacob Faibussowitsch { 3389f2a5309cSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 3390ab4d48faSStefano Zampini PetscBool flg; 33915fd66863SKarl Rupp 3392f2a5309cSSatish Balay PetscFunctionBegin; 33939566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)A, MATMPIBAIJ, &flg)); 33945f80ce2aSJacob Faibussowitsch PetscCheck(flg, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "This function requires a MATMPIBAIJ matrix as input"); 339521e72a00SBarry Smith if (Ad) *Ad = a->A; 339621e72a00SBarry Smith if (Ao) *Ao = a->B; 339721e72a00SBarry Smith if (colmap) *colmap = a->garray; 33983ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3399f2a5309cSSatish Balay } 340085535b8eSBarry Smith 340185535b8eSBarry Smith /* 340285535b8eSBarry Smith Special version for direct calls from Fortran (to eliminate two function call overheads 340385535b8eSBarry Smith */ 340485535b8eSBarry Smith #if defined(PETSC_HAVE_FORTRAN_CAPS) 340585535b8eSBarry Smith #define matmpibaijsetvaluesblocked_ MATMPIBAIJSETVALUESBLOCKED 340685535b8eSBarry Smith #elif !defined(PETSC_HAVE_FORTRAN_UNDERSCORE) 340785535b8eSBarry Smith #define matmpibaijsetvaluesblocked_ matmpibaijsetvaluesblocked 340885535b8eSBarry Smith #endif 340985535b8eSBarry Smith 34102920cce0SJacob Faibussowitsch // PetscClangLinter pragma disable: -fdoc-synopsis-matching-symbol-name 341185535b8eSBarry Smith /*@C 341211a5261eSBarry Smith MatMPIBAIJSetValuesBlocked - Direct Fortran call to replace call to `MatSetValuesBlocked()` 341385535b8eSBarry Smith 3414c3339decSBarry Smith Collective 341585535b8eSBarry Smith 341685535b8eSBarry Smith Input Parameters: 3417fe59aa6dSJacob Faibussowitsch + matin - the matrix 341885535b8eSBarry Smith . min - number of input rows 341985535b8eSBarry Smith . im - input rows 342085535b8eSBarry Smith . nin - number of input columns 342185535b8eSBarry Smith . in - input columns 342285535b8eSBarry Smith . v - numerical values input 342311a5261eSBarry Smith - addvin - `INSERT_VALUES` or `ADD_VALUES` 342485535b8eSBarry Smith 342520f4b53cSBarry Smith Level: advanced 342620f4b53cSBarry Smith 3427fe59aa6dSJacob Faibussowitsch Developer Notes: 342811a5261eSBarry Smith This has a complete copy of `MatSetValuesBlocked_MPIBAIJ()` which is terrible code un-reuse. 342985535b8eSBarry Smith 343067be906fSBarry Smith .seealso: `Mat`, `MatSetValuesBlocked()` 343185535b8eSBarry Smith @*/ 343266976f2fSJacob Faibussowitsch PETSC_EXTERN PetscErrorCode matmpibaijsetvaluesblocked_(Mat *matin, PetscInt *min, const PetscInt im[], PetscInt *nin, const PetscInt in[], const MatScalar v[], InsertMode *addvin) 3433d71ae5a4SJacob Faibussowitsch { 343485535b8eSBarry Smith /* convert input arguments to C version */ 343585535b8eSBarry Smith Mat mat = *matin; 343685535b8eSBarry Smith PetscInt m = *min, n = *nin; 343785535b8eSBarry Smith InsertMode addv = *addvin; 343885535b8eSBarry Smith 343985535b8eSBarry Smith Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 344085535b8eSBarry Smith const MatScalar *value; 344185535b8eSBarry Smith MatScalar *barray = baij->barray; 3442ace3abfcSBarry Smith PetscBool roworiented = baij->roworiented; 344385535b8eSBarry Smith PetscInt i, j, ii, jj, row, col, rstart = baij->rstartbs; 344485535b8eSBarry Smith PetscInt rend = baij->rendbs, cstart = baij->cstartbs, stepval; 3445d0f46423SBarry Smith PetscInt cend = baij->cendbs, bs = mat->rmap->bs, bs2 = baij->bs2; 344685535b8eSBarry Smith 344785535b8eSBarry Smith PetscFunctionBegin; 344885535b8eSBarry Smith /* tasks normally handled by MatSetValuesBlocked() */ 344926fbe8dcSKarl Rupp if (mat->insertmode == NOT_SET_VALUES) mat->insertmode = addv; 34505f80ce2aSJacob Faibussowitsch else PetscCheck(mat->insertmode == addv, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Cannot mix add values and insert values"); 34515f80ce2aSJacob Faibussowitsch PetscCheck(!mat->factortype, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Not for factored matrix"); 345285535b8eSBarry Smith if (mat->assembled) { 345385535b8eSBarry Smith mat->was_assembled = PETSC_TRUE; 345485535b8eSBarry Smith mat->assembled = PETSC_FALSE; 345585535b8eSBarry Smith } 34569566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(MAT_SetValues, mat, 0, 0, 0)); 345785535b8eSBarry Smith 345885535b8eSBarry Smith if (!barray) { 34599566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(bs2, &barray)); 346085535b8eSBarry Smith baij->barray = barray; 346185535b8eSBarry Smith } 346285535b8eSBarry Smith 346326fbe8dcSKarl Rupp if (roworiented) stepval = (n - 1) * bs; 346426fbe8dcSKarl Rupp else stepval = (m - 1) * bs; 346526fbe8dcSKarl Rupp 346685535b8eSBarry Smith for (i = 0; i < m; i++) { 346785535b8eSBarry Smith if (im[i] < 0) continue; 34686bdcaf15SBarry Smith PetscCheck(im[i] < baij->Mbs, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large, row %" PetscInt_FMT " max %" PetscInt_FMT, im[i], baij->Mbs - 1); 346985535b8eSBarry Smith if (im[i] >= rstart && im[i] < rend) { 347085535b8eSBarry Smith row = im[i] - rstart; 347185535b8eSBarry Smith for (j = 0; j < n; j++) { 347285535b8eSBarry Smith /* If NumCol = 1 then a copy is not required */ 347385535b8eSBarry Smith if ((roworiented) && (n == 1)) { 347485535b8eSBarry Smith barray = (MatScalar *)v + i * bs2; 347585535b8eSBarry Smith } else if ((!roworiented) && (m == 1)) { 347685535b8eSBarry Smith barray = (MatScalar *)v + j * bs2; 347785535b8eSBarry Smith } else { /* Here a copy is required */ 347885535b8eSBarry Smith if (roworiented) { 347985535b8eSBarry Smith value = v + i * (stepval + bs) * bs + j * bs; 348085535b8eSBarry Smith } else { 348185535b8eSBarry Smith value = v + j * (stepval + bs) * bs + i * bs; 348285535b8eSBarry Smith } 348385535b8eSBarry Smith for (ii = 0; ii < bs; ii++, value += stepval) { 3484ad540459SPierre Jolivet for (jj = 0; jj < bs; jj++) *barray++ = *value++; 348585535b8eSBarry Smith } 348685535b8eSBarry Smith barray -= bs2; 348785535b8eSBarry Smith } 348885535b8eSBarry Smith 348985535b8eSBarry Smith if (in[j] >= cstart && in[j] < cend) { 349085535b8eSBarry Smith col = in[j] - cstart; 34919566063dSJacob Faibussowitsch PetscCall(MatSetValuesBlocked_SeqBAIJ_Inlined(baij->A, row, col, barray, addv, im[i], in[j])); 3492f7d195e4SLawrence Mitchell } else if (in[j] < 0) { 3493f7d195e4SLawrence Mitchell continue; 3494f7d195e4SLawrence Mitchell } else { 3495f7d195e4SLawrence Mitchell PetscCheck(in[j] < baij->Nbs, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large, col %" PetscInt_FMT " max %" PetscInt_FMT, in[j], baij->Nbs - 1); 349685535b8eSBarry Smith if (mat->was_assembled) { 349748a46eb9SPierre Jolivet if (!baij->colmap) PetscCall(MatCreateColmap_MPIBAIJ_Private(mat)); 349885535b8eSBarry Smith 349985535b8eSBarry Smith #if defined(PETSC_USE_DEBUG) 350085535b8eSBarry Smith #if defined(PETSC_USE_CTABLE) 35019371c9d4SSatish Balay { 35029371c9d4SSatish Balay PetscInt data; 3503eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIGetWithDefault(baij->colmap, in[j] + 1, 0, &data)); 350408401ef6SPierre Jolivet PetscCheck((data - 1) % bs == 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Incorrect colmap"); 350585535b8eSBarry Smith } 350685535b8eSBarry Smith #else 350708401ef6SPierre Jolivet PetscCheck((baij->colmap[in[j]] - 1) % bs == 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Incorrect colmap"); 350885535b8eSBarry Smith #endif 350985535b8eSBarry Smith #endif 351085535b8eSBarry Smith #if defined(PETSC_USE_CTABLE) 3511eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIGetWithDefault(baij->colmap, in[j] + 1, 0, &col)); 351285535b8eSBarry Smith col = (col - 1) / bs; 351385535b8eSBarry Smith #else 351485535b8eSBarry Smith col = (baij->colmap[in[j]] - 1) / bs; 351585535b8eSBarry Smith #endif 3516f4f49eeaSPierre Jolivet if (col < 0 && !((Mat_SeqBAIJ *)baij->A->data)->nonew) { 35179566063dSJacob Faibussowitsch PetscCall(MatDisAssemble_MPIBAIJ(mat)); 351885535b8eSBarry Smith col = in[j]; 351985535b8eSBarry Smith } 352026fbe8dcSKarl Rupp } else col = in[j]; 35219566063dSJacob Faibussowitsch PetscCall(MatSetValuesBlocked_SeqBAIJ_Inlined(baij->B, row, col, barray, addv, im[i], in[j])); 352285535b8eSBarry Smith } 352385535b8eSBarry Smith } 352485535b8eSBarry Smith } else { 352585535b8eSBarry Smith if (!baij->donotstash) { 352685535b8eSBarry Smith if (roworiented) { 35279566063dSJacob Faibussowitsch PetscCall(MatStashValuesRowBlocked_Private(&mat->bstash, im[i], n, in, v, m, n, i)); 352885535b8eSBarry Smith } else { 35299566063dSJacob Faibussowitsch PetscCall(MatStashValuesColBlocked_Private(&mat->bstash, im[i], n, in, v, m, n, i)); 353085535b8eSBarry Smith } 353185535b8eSBarry Smith } 353285535b8eSBarry Smith } 353385535b8eSBarry Smith } 353485535b8eSBarry Smith 353585535b8eSBarry Smith /* task normally handled by MatSetValuesBlocked() */ 35369566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(MAT_SetValues, mat, 0, 0, 0)); 35373ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 353885535b8eSBarry Smith } 3539dfb205c3SBarry Smith 3540dfb205c3SBarry Smith /*@ 3541d8a51d2aSBarry Smith MatCreateMPIBAIJWithArrays - creates a `MATMPIBAIJ` matrix using arrays that contain in standard block CSR format for the local rows. 3542dfb205c3SBarry Smith 3543d083f849SBarry Smith Collective 3544dfb205c3SBarry Smith 3545dfb205c3SBarry Smith Input Parameters: 3546dfb205c3SBarry Smith + comm - MPI communicator 3547dfb205c3SBarry Smith . bs - the block size, only a block size of 1 is supported 354811a5261eSBarry Smith . m - number of local rows (Cannot be `PETSC_DECIDE`) 3549dfb205c3SBarry Smith . n - This value should be the same as the local size used in creating the 3550d8a51d2aSBarry Smith x vector for the matrix-vector product $ y = Ax $. (or `PETSC_DECIDE` to have 3551d8a51d2aSBarry Smith calculated if `N` is given) For square matrices `n` is almost always `m`. 3552d8a51d2aSBarry Smith . M - number of global rows (or `PETSC_DETERMINE` to have calculated if `m` is given) 3553d8a51d2aSBarry Smith . N - number of global columns (or `PETSC_DETERMINE` to have calculated if `n` is given) 3554483a2f95SBarry Smith . i - row indices; that is i[0] = 0, i[row] = i[row-1] + number of block elements in that rowth block row of the matrix 3555dfb205c3SBarry Smith . j - column indices 3556dfb205c3SBarry Smith - a - matrix values 3557dfb205c3SBarry Smith 3558dfb205c3SBarry Smith Output Parameter: 3559dfb205c3SBarry Smith . mat - the matrix 3560dfb205c3SBarry Smith 3561dfb205c3SBarry Smith Level: intermediate 3562dfb205c3SBarry Smith 3563dfb205c3SBarry Smith Notes: 356467be906fSBarry Smith The `i`, `j`, and `a` arrays ARE copied by this routine into the internal format used by PETSc; 3565dfb205c3SBarry Smith thus you CANNOT change the matrix entries by changing the values of a[] after you have 356611a5261eSBarry Smith called this routine. Use `MatCreateMPIAIJWithSplitArrays()` to avoid needing to copy the arrays. 3567dfb205c3SBarry Smith 35683adadaf3SJed Brown The order of the entries in values is the same as the block compressed sparse row storage format; that is, it is 35693adadaf3SJed Brown the same as a three dimensional array in Fortran values(bs,bs,nnz) that contains the first column of the first 35703adadaf3SJed Brown block, followed by the second column of the first block etc etc. That is, the blocks are contiguous in memory 35713adadaf3SJed Brown with column-major ordering within blocks. 35723adadaf3SJed Brown 3573d8a51d2aSBarry Smith The `i` and `j` indices are 0 based, and `i` indices are indices corresponding to the local `j` array. 3574dfb205c3SBarry Smith 357567be906fSBarry Smith .seealso: `Mat`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`, 35767d2c085eSPierre Jolivet `MATMPIAIJ`, `MatCreateAIJ()`, `MatCreateMPIAIJWithSplitArrays()` 3577dfb205c3SBarry Smith @*/ 3578d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIBAIJWithArrays(MPI_Comm comm, PetscInt bs, PetscInt m, PetscInt n, PetscInt M, PetscInt N, const PetscInt i[], const PetscInt j[], const PetscScalar a[], Mat *mat) 3579d71ae5a4SJacob Faibussowitsch { 3580dfb205c3SBarry Smith PetscFunctionBegin; 35815f80ce2aSJacob Faibussowitsch PetscCheck(!i[0], PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "i (row indices) must start with 0"); 35825f80ce2aSJacob Faibussowitsch PetscCheck(m >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "local number of rows (m) cannot be PETSC_DECIDE, or negative"); 35839566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, mat)); 35849566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*mat, m, n, M, N)); 35859566063dSJacob Faibussowitsch PetscCall(MatSetType(*mat, MATMPIBAIJ)); 35869566063dSJacob Faibussowitsch PetscCall(MatSetBlockSize(*mat, bs)); 35879566063dSJacob Faibussowitsch PetscCall(MatSetUp(*mat)); 35889566063dSJacob Faibussowitsch PetscCall(MatSetOption(*mat, MAT_ROW_ORIENTED, PETSC_FALSE)); 35899566063dSJacob Faibussowitsch PetscCall(MatMPIBAIJSetPreallocationCSR(*mat, bs, i, j, a)); 35909566063dSJacob Faibussowitsch PetscCall(MatSetOption(*mat, MAT_ROW_ORIENTED, PETSC_TRUE)); 35913ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3592dfb205c3SBarry Smith } 3593e561ad89SHong Zhang 3594d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIMatConcatenateSeqMat_MPIBAIJ(MPI_Comm comm, Mat inmat, PetscInt n, MatReuse scall, Mat *outmat) 3595d71ae5a4SJacob Faibussowitsch { 3596bd153df0SHong Zhang PetscInt m, N, i, rstart, nnz, Ii, bs, cbs; 3597bd153df0SHong Zhang PetscInt *indx; 3598bd153df0SHong Zhang PetscScalar *values; 3599e561ad89SHong Zhang 3600e561ad89SHong Zhang PetscFunctionBegin; 36019566063dSJacob Faibussowitsch PetscCall(MatGetSize(inmat, &m, &N)); 3602bd153df0SHong Zhang if (scall == MAT_INITIAL_MATRIX) { /* symbolic phase */ 3603bd153df0SHong Zhang Mat_SeqBAIJ *a = (Mat_SeqBAIJ *)inmat->data; 36042c6ba4edSHong Zhang PetscInt *dnz, *onz, mbs, Nbs, nbs; 3605bd153df0SHong Zhang PetscInt *bindx, rmax = a->rmax, j; 360677f764caSHong Zhang PetscMPIInt rank, size; 3607e561ad89SHong Zhang 36089566063dSJacob Faibussowitsch PetscCall(MatGetBlockSizes(inmat, &bs, &cbs)); 36099371c9d4SSatish Balay mbs = m / bs; 36109371c9d4SSatish Balay Nbs = N / cbs; 361148a46eb9SPierre Jolivet if (n == PETSC_DECIDE) PetscCall(PetscSplitOwnershipBlock(comm, cbs, &n, &N)); 3612da91a574SPierre Jolivet nbs = n / cbs; 3613e561ad89SHong Zhang 36149566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(rmax, &bindx)); 3615d0609cedSBarry Smith MatPreallocateBegin(comm, mbs, nbs, dnz, onz); /* inline function, output __end and __rstart are used below */ 361677f764caSHong Zhang 36179566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 36189566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &size)); 361977f764caSHong Zhang if (rank == size - 1) { 362077f764caSHong Zhang /* Check sum(nbs) = Nbs */ 36215f80ce2aSJacob Faibussowitsch PetscCheck(__end == Nbs, PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "Sum of local block columns %" PetscInt_FMT " != global block columns %" PetscInt_FMT, __end, Nbs); 362277f764caSHong Zhang } 362377f764caSHong Zhang 3624d0609cedSBarry Smith rstart = __rstart; /* block rstart of *outmat; see inline function MatPreallocateBegin */ 3625bd153df0SHong Zhang for (i = 0; i < mbs; i++) { 36269566063dSJacob Faibussowitsch PetscCall(MatGetRow_SeqBAIJ(inmat, i * bs, &nnz, &indx, NULL)); /* non-blocked nnz and indx */ 3627647a6520SHong Zhang nnz = nnz / bs; 3628647a6520SHong Zhang for (j = 0; j < nnz; j++) bindx[j] = indx[j * bs] / bs; 36299566063dSJacob Faibussowitsch PetscCall(MatPreallocateSet(i + rstart, nnz, bindx, dnz, onz)); 36309566063dSJacob Faibussowitsch PetscCall(MatRestoreRow_SeqBAIJ(inmat, i * bs, &nnz, &indx, NULL)); 3631e561ad89SHong Zhang } 36329566063dSJacob Faibussowitsch PetscCall(PetscFree(bindx)); 3633e561ad89SHong Zhang 36349566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, outmat)); 36359566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*outmat, m, n, PETSC_DETERMINE, PETSC_DETERMINE)); 36369566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizes(*outmat, bs, cbs)); 36379566063dSJacob Faibussowitsch PetscCall(MatSetType(*outmat, MATBAIJ)); 36389566063dSJacob Faibussowitsch PetscCall(MatSeqBAIJSetPreallocation(*outmat, bs, 0, dnz)); 36399566063dSJacob Faibussowitsch PetscCall(MatMPIBAIJSetPreallocation(*outmat, bs, 0, dnz, 0, onz)); 3640d0609cedSBarry Smith MatPreallocateEnd(dnz, onz); 36419566063dSJacob Faibussowitsch PetscCall(MatSetOption(*outmat, MAT_NO_OFF_PROC_ENTRIES, PETSC_TRUE)); 3642e561ad89SHong Zhang } 3643e561ad89SHong Zhang 3644bd153df0SHong Zhang /* numeric phase */ 36459566063dSJacob Faibussowitsch PetscCall(MatGetBlockSizes(inmat, &bs, &cbs)); 36469566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(*outmat, &rstart, NULL)); 3647e561ad89SHong Zhang 3648e561ad89SHong Zhang for (i = 0; i < m; i++) { 36499566063dSJacob Faibussowitsch PetscCall(MatGetRow_SeqBAIJ(inmat, i, &nnz, &indx, &values)); 3650e561ad89SHong Zhang Ii = i + rstart; 36519566063dSJacob Faibussowitsch PetscCall(MatSetValues(*outmat, 1, &Ii, nnz, indx, values, INSERT_VALUES)); 36529566063dSJacob Faibussowitsch PetscCall(MatRestoreRow_SeqBAIJ(inmat, i, &nnz, &indx, &values)); 3653e561ad89SHong Zhang } 36549566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(*outmat, MAT_FINAL_ASSEMBLY)); 36559566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(*outmat, MAT_FINAL_ASSEMBLY)); 36563ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3657e561ad89SHong Zhang } 3658