xref: /petsc/src/mat/impls/baij/mpi/mpibaij.c (revision 8c07d4e34e2694b8a81445e6bdca0dcfa92501ea)
1be1d678aSKris Buschelman #define PETSCMAT_DLL
279bdfe76SSatish Balay 
3e090d566SSatish Balay #include "src/mat/impls/baij/mpi/mpibaij.h"   /*I  "petscmat.h"  I*/
479bdfe76SSatish Balay 
5dfbe8321SBarry Smith EXTERN PetscErrorCode MatSetUpMultiply_MPIBAIJ(Mat);
6dfbe8321SBarry Smith EXTERN PetscErrorCode DisAssemble_MPIBAIJ(Mat);
7b24ad042SBarry Smith EXTERN PetscErrorCode MatIncreaseOverlap_MPIBAIJ(Mat,PetscInt,IS[],PetscInt);
8b24ad042SBarry Smith EXTERN PetscErrorCode MatGetSubMatrices_MPIBAIJ(Mat,PetscInt,const IS[],const IS[],MatReuse,Mat *[]);
9b24ad042SBarry Smith EXTERN PetscErrorCode MatGetValues_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt [],PetscScalar []);
10b24ad042SBarry Smith EXTERN PetscErrorCode MatSetValues_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt [],const PetscScalar [],InsertMode);
11b24ad042SBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode);
12b24ad042SBarry Smith EXTERN PetscErrorCode MatGetRow_SeqBAIJ(Mat,PetscInt,PetscInt*,PetscInt*[],PetscScalar*[]);
13b24ad042SBarry Smith EXTERN PetscErrorCode MatRestoreRow_SeqBAIJ(Mat,PetscInt,PetscInt*,PetscInt*[],PetscScalar*[]);
14f4df32b1SMatthew Knepley EXTERN PetscErrorCode MatZeroRows_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscScalar);
1593fea6afSBarry Smith 
1693fea6afSBarry Smith /*  UGLY, ugly, ugly
1787828ca2SBarry Smith    When MatScalar == PetscScalar the function MatSetValuesBlocked_MPIBAIJ_MatScalar() does
1893fea6afSBarry Smith    not exist. Otherwise ..._MatScalar() takes matrix elements in single precision and
1993fea6afSBarry Smith    inserts them into the single precision data structure. The function MatSetValuesBlocked_MPIBAIJ()
2093fea6afSBarry Smith    converts the entries into single precision and then calls ..._MatScalar() to put them
2193fea6afSBarry Smith    into the single precision data structures.
2293fea6afSBarry Smith */
2393fea6afSBarry Smith #if defined(PETSC_USE_MAT_SINGLE)
24b24ad042SBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_SeqBAIJ_MatScalar(Mat,PetscInt,const PetscInt*,PetscInt,const PetscInt*,const MatScalar*,InsertMode);
25b24ad042SBarry Smith EXTERN PetscErrorCode MatSetValues_MPIBAIJ_MatScalar(Mat,PetscInt,const PetscInt*,PetscInt,const PetscInt*,const MatScalar*,InsertMode);
26b24ad042SBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_MPIBAIJ_MatScalar(Mat,PetscInt,const PetscInt*,PetscInt,const PetscInt*,const MatScalar*,InsertMode);
27b24ad042SBarry Smith EXTERN PetscErrorCode MatSetValues_MPIBAIJ_HT_MatScalar(Mat,PetscInt,const PetscInt*,PetscInt,const PetscInt*,const MatScalar*,InsertMode);
28b24ad042SBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_MPIBAIJ_HT_MatScalar(Mat,PetscInt,const PetscInt*,PetscInt,const PetscInt*,const MatScalar*,InsertMode);
2993fea6afSBarry Smith #else
306fa18ffdSBarry Smith #define MatSetValuesBlocked_SeqBAIJ_MatScalar      MatSetValuesBlocked_SeqBAIJ
3193fea6afSBarry Smith #define MatSetValues_MPIBAIJ_MatScalar             MatSetValues_MPIBAIJ
3293fea6afSBarry Smith #define MatSetValuesBlocked_MPIBAIJ_MatScalar      MatSetValuesBlocked_MPIBAIJ
336fa18ffdSBarry Smith #define MatSetValues_MPIBAIJ_HT_MatScalar          MatSetValues_MPIBAIJ_HT
346fa18ffdSBarry Smith #define MatSetValuesBlocked_MPIBAIJ_HT_MatScalar   MatSetValuesBlocked_MPIBAIJ_HT
3593fea6afSBarry Smith #endif
363b2fbd54SBarry Smith 
374a2ae208SSatish Balay #undef __FUNCT__
384a2ae208SSatish Balay #define __FUNCT__ "MatGetRowMax_MPIBAIJ"
39dfbe8321SBarry Smith PetscErrorCode MatGetRowMax_MPIBAIJ(Mat A,Vec v)
407843d17aSBarry Smith {
417843d17aSBarry Smith   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)A->data;
42dfbe8321SBarry Smith   PetscErrorCode ierr;
43b24ad042SBarry Smith   PetscInt       i;
4487828ca2SBarry Smith   PetscScalar    *va,*vb;
457843d17aSBarry Smith   Vec            vtmp;
467843d17aSBarry Smith 
477843d17aSBarry Smith   PetscFunctionBegin;
487843d17aSBarry Smith 
497843d17aSBarry Smith   ierr = MatGetRowMax(a->A,v);CHKERRQ(ierr);
501ebc52fbSHong Zhang   ierr = VecGetArray(v,&va);CHKERRQ(ierr);
517843d17aSBarry Smith 
52899cda47SBarry Smith   ierr = VecCreateSeq(PETSC_COMM_SELF,A->rmap.n,&vtmp);CHKERRQ(ierr);
537843d17aSBarry Smith   ierr = MatGetRowMax(a->B,vtmp);CHKERRQ(ierr);
541ebc52fbSHong Zhang   ierr = VecGetArray(vtmp,&vb);CHKERRQ(ierr);
557843d17aSBarry Smith 
56899cda47SBarry Smith   for (i=0; i<A->rmap.n; i++){
57273d9f13SBarry Smith     if (PetscAbsScalar(va[i]) < PetscAbsScalar(vb[i])) va[i] = vb[i];
587843d17aSBarry Smith   }
597843d17aSBarry Smith 
601ebc52fbSHong Zhang   ierr = VecRestoreArray(v,&va);CHKERRQ(ierr);
611ebc52fbSHong Zhang   ierr = VecRestoreArray(vtmp,&vb);CHKERRQ(ierr);
62ac355199SBarry Smith   ierr = VecDestroy(vtmp);CHKERRQ(ierr);
637843d17aSBarry Smith 
647843d17aSBarry Smith   PetscFunctionReturn(0);
657843d17aSBarry Smith }
667843d17aSBarry Smith 
677fc3c18eSBarry Smith EXTERN_C_BEGIN
684a2ae208SSatish Balay #undef __FUNCT__
694a2ae208SSatish Balay #define __FUNCT__ "MatStoreValues_MPIBAIJ"
70be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatStoreValues_MPIBAIJ(Mat mat)
717fc3c18eSBarry Smith {
727fc3c18eSBarry Smith   Mat_MPIBAIJ    *aij = (Mat_MPIBAIJ *)mat->data;
73dfbe8321SBarry Smith   PetscErrorCode ierr;
747fc3c18eSBarry Smith 
757fc3c18eSBarry Smith   PetscFunctionBegin;
767fc3c18eSBarry Smith   ierr = MatStoreValues(aij->A);CHKERRQ(ierr);
777fc3c18eSBarry Smith   ierr = MatStoreValues(aij->B);CHKERRQ(ierr);
787fc3c18eSBarry Smith   PetscFunctionReturn(0);
797fc3c18eSBarry Smith }
807fc3c18eSBarry Smith EXTERN_C_END
817fc3c18eSBarry Smith 
827fc3c18eSBarry Smith EXTERN_C_BEGIN
834a2ae208SSatish Balay #undef __FUNCT__
844a2ae208SSatish Balay #define __FUNCT__ "MatRetrieveValues_MPIBAIJ"
85be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatRetrieveValues_MPIBAIJ(Mat mat)
867fc3c18eSBarry Smith {
877fc3c18eSBarry Smith   Mat_MPIBAIJ    *aij = (Mat_MPIBAIJ *)mat->data;
88dfbe8321SBarry Smith   PetscErrorCode ierr;
897fc3c18eSBarry Smith 
907fc3c18eSBarry Smith   PetscFunctionBegin;
917fc3c18eSBarry Smith   ierr = MatRetrieveValues(aij->A);CHKERRQ(ierr);
927fc3c18eSBarry Smith   ierr = MatRetrieveValues(aij->B);CHKERRQ(ierr);
937fc3c18eSBarry Smith   PetscFunctionReturn(0);
947fc3c18eSBarry Smith }
957fc3c18eSBarry Smith EXTERN_C_END
967fc3c18eSBarry Smith 
97537820f0SBarry Smith /*
98537820f0SBarry Smith      Local utility routine that creates a mapping from the global column
9957b952d6SSatish Balay    number to the local number in the off-diagonal part of the local
10057b952d6SSatish Balay    storage of the matrix.  This is done in a non scable way since the
10157b952d6SSatish Balay    length of colmap equals the global matrix length.
10257b952d6SSatish Balay */
1034a2ae208SSatish Balay #undef __FUNCT__
1044a2ae208SSatish Balay #define __FUNCT__ "CreateColmap_MPIBAIJ_Private"
105dfbe8321SBarry Smith PetscErrorCode CreateColmap_MPIBAIJ_Private(Mat mat)
10657b952d6SSatish Balay {
10757b952d6SSatish Balay   Mat_MPIBAIJ    *baij = (Mat_MPIBAIJ*)mat->data;
10857b952d6SSatish Balay   Mat_SeqBAIJ    *B = (Mat_SeqBAIJ*)baij->B->data;
1096849ba73SBarry Smith   PetscErrorCode ierr;
110899cda47SBarry Smith   PetscInt       nbs = B->nbs,i,bs=mat->rmap.bs;
11157b952d6SSatish Balay 
112d64ed03dSBarry Smith   PetscFunctionBegin;
113aa482453SBarry Smith #if defined (PETSC_USE_CTABLE)
114f14a1c24SBarry Smith   ierr = PetscTableCreate(baij->nbs,&baij->colmap);CHKERRQ(ierr);
11548e59246SSatish Balay   for (i=0; i<nbs; i++){
1160f5bd95cSBarry Smith     ierr = PetscTableAdd(baij->colmap,baij->garray[i]+1,i*bs+1);CHKERRQ(ierr);
11748e59246SSatish Balay   }
11848e59246SSatish Balay #else
119b24ad042SBarry Smith   ierr = PetscMalloc((baij->Nbs+1)*sizeof(PetscInt),&baij->colmap);CHKERRQ(ierr);
12052e6d16bSBarry Smith   ierr = PetscLogObjectMemory(mat,baij->Nbs*sizeof(PetscInt));CHKERRQ(ierr);
121b24ad042SBarry Smith   ierr = PetscMemzero(baij->colmap,baij->Nbs*sizeof(PetscInt));CHKERRQ(ierr);
122928fc39bSSatish Balay   for (i=0; i<nbs; i++) baij->colmap[baij->garray[i]] = i*bs+1;
12348e59246SSatish Balay #endif
1243a40ed3dSBarry Smith   PetscFunctionReturn(0);
12557b952d6SSatish Balay }
12657b952d6SSatish Balay 
12780c1aa95SSatish Balay #define CHUNKSIZE  10
12880c1aa95SSatish Balay 
129f5e9677aSSatish Balay #define  MatSetValues_SeqBAIJ_A_Private(row,col,value,addv) \
13080c1aa95SSatish Balay { \
13180c1aa95SSatish Balay  \
13280c1aa95SSatish Balay     brow = row/bs;  \
13380c1aa95SSatish Balay     rp   = aj + ai[brow]; ap = aa + bs2*ai[brow]; \
134ac7a638eSSatish Balay     rmax = aimax[brow]; nrow = ailen[brow]; \
13580c1aa95SSatish Balay       bcol = col/bs; \
13680c1aa95SSatish Balay       ridx = row % bs; cidx = col % bs; \
137ab26458aSBarry Smith       low = 0; high = nrow; \
138ab26458aSBarry Smith       while (high-low > 3) { \
139ab26458aSBarry Smith         t = (low+high)/2; \
140ab26458aSBarry Smith         if (rp[t] > bcol) high = t; \
141ab26458aSBarry Smith         else              low  = t; \
142ab26458aSBarry Smith       } \
143ab26458aSBarry Smith       for (_i=low; _i<high; _i++) { \
14480c1aa95SSatish Balay         if (rp[_i] > bcol) break; \
14580c1aa95SSatish Balay         if (rp[_i] == bcol) { \
14680c1aa95SSatish Balay           bap  = ap +  bs2*_i + bs*cidx + ridx; \
147eada6651SSatish Balay           if (addv == ADD_VALUES) *bap += value;  \
148eada6651SSatish Balay           else                    *bap  = value;  \
149ac7a638eSSatish Balay           goto a_noinsert; \
15080c1aa95SSatish Balay         } \
15180c1aa95SSatish Balay       } \
15289280ab3SLois Curfman McInnes       if (a->nonew == 1) goto a_noinsert; \
153085a36d4SBarry Smith       if (a->nonew == -1) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \
154e6b907acSBarry Smith       MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,brow,bcol,rmax,aa,ai,aj,rp,ap,aimax,a->nonew); \
15580c1aa95SSatish Balay       N = nrow++ - 1;  \
15680c1aa95SSatish Balay       /* shift up all the later entries in this row */ \
15780c1aa95SSatish Balay       for (ii=N; ii>=_i; ii--) { \
15880c1aa95SSatish Balay         rp[ii+1] = rp[ii]; \
1593eda8832SBarry Smith         ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \
16080c1aa95SSatish Balay       } \
1613eda8832SBarry Smith       if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr); }  \
16280c1aa95SSatish Balay       rp[_i]                      = bcol;  \
16380c1aa95SSatish Balay       ap[bs2*_i + bs*cidx + ridx] = value;  \
164ac7a638eSSatish Balay       a_noinsert:; \
16580c1aa95SSatish Balay     ailen[brow] = nrow; \
16680c1aa95SSatish Balay }
16757b952d6SSatish Balay 
168ac7a638eSSatish Balay #define  MatSetValues_SeqBAIJ_B_Private(row,col,value,addv) \
169ac7a638eSSatish Balay { \
170ac7a638eSSatish Balay     brow = row/bs;  \
171ac7a638eSSatish Balay     rp   = bj + bi[brow]; ap = ba + bs2*bi[brow]; \
172ac7a638eSSatish Balay     rmax = bimax[brow]; nrow = bilen[brow]; \
173ac7a638eSSatish Balay       bcol = col/bs; \
174ac7a638eSSatish Balay       ridx = row % bs; cidx = col % bs; \
175ac7a638eSSatish Balay       low = 0; high = nrow; \
176ac7a638eSSatish Balay       while (high-low > 3) { \
177ac7a638eSSatish Balay         t = (low+high)/2; \
178ac7a638eSSatish Balay         if (rp[t] > bcol) high = t; \
179ac7a638eSSatish Balay         else              low  = t; \
180ac7a638eSSatish Balay       } \
181ac7a638eSSatish Balay       for (_i=low; _i<high; _i++) { \
182ac7a638eSSatish Balay         if (rp[_i] > bcol) break; \
183ac7a638eSSatish Balay         if (rp[_i] == bcol) { \
184ac7a638eSSatish Balay           bap  = ap +  bs2*_i + bs*cidx + ridx; \
185ac7a638eSSatish Balay           if (addv == ADD_VALUES) *bap += value;  \
186ac7a638eSSatish Balay           else                    *bap  = value;  \
187ac7a638eSSatish Balay           goto b_noinsert; \
188ac7a638eSSatish Balay         } \
189ac7a638eSSatish Balay       } \
19089280ab3SLois Curfman McInnes       if (b->nonew == 1) goto b_noinsert; \
191085a36d4SBarry Smith       if (b->nonew == -1) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \
192e6b907acSBarry Smith       MatSeqXAIJReallocateAIJ(B,b->mbs,bs2,nrow,brow,bcol,rmax,ba,bi,bj,rp,ap,bimax,b->nonew); \
193085a36d4SBarry Smith       CHKMEMQ;\
194ac7a638eSSatish Balay       N = nrow++ - 1;  \
195ac7a638eSSatish Balay       /* shift up all the later entries in this row */ \
196ac7a638eSSatish Balay       for (ii=N; ii>=_i; ii--) { \
197ac7a638eSSatish Balay         rp[ii+1] = rp[ii]; \
1983eda8832SBarry Smith         ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \
199ac7a638eSSatish Balay       } \
2003eda8832SBarry Smith       if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr);}  \
201ac7a638eSSatish Balay       rp[_i]                      = bcol;  \
202ac7a638eSSatish Balay       ap[bs2*_i + bs*cidx + ridx] = value;  \
203ac7a638eSSatish Balay       b_noinsert:; \
204ac7a638eSSatish Balay     bilen[brow] = nrow; \
205ac7a638eSSatish Balay }
206ac7a638eSSatish Balay 
20793fea6afSBarry Smith #if defined(PETSC_USE_MAT_SINGLE)
2084a2ae208SSatish Balay #undef __FUNCT__
2094a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_MPIBAIJ"
210b24ad042SBarry Smith PetscErrorCode MatSetValues_MPIBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv)
21157b952d6SSatish Balay {
2126fa18ffdSBarry Smith   Mat_MPIBAIJ    *b = (Mat_MPIBAIJ*)mat->data;
213dfbe8321SBarry Smith   PetscErrorCode ierr;
214b24ad042SBarry Smith   PetscInt       i,N = m*n;
2156fa18ffdSBarry Smith   MatScalar      *vsingle;
21693fea6afSBarry Smith 
21793fea6afSBarry Smith   PetscFunctionBegin;
2186fa18ffdSBarry Smith   if (N > b->setvalueslen) {
21905b42c5fSBarry Smith     ierr = PetscFree(b->setvaluescopy);CHKERRQ(ierr);
22082502324SSatish Balay     ierr = PetscMalloc(N*sizeof(MatScalar),&b->setvaluescopy);CHKERRQ(ierr);
2216fa18ffdSBarry Smith     b->setvalueslen  = N;
2226fa18ffdSBarry Smith   }
2236fa18ffdSBarry Smith   vsingle = b->setvaluescopy;
2246fa18ffdSBarry Smith 
22593fea6afSBarry Smith   for (i=0; i<N; i++) {
22693fea6afSBarry Smith     vsingle[i] = v[i];
22793fea6afSBarry Smith   }
22893fea6afSBarry Smith   ierr = MatSetValues_MPIBAIJ_MatScalar(mat,m,im,n,in,vsingle,addv);CHKERRQ(ierr);
22993fea6afSBarry Smith   PetscFunctionReturn(0);
23093fea6afSBarry Smith }
23193fea6afSBarry Smith 
2324a2ae208SSatish Balay #undef __FUNCT__
2334a2ae208SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_MPIBAIJ"
234b24ad042SBarry Smith PetscErrorCode MatSetValuesBlocked_MPIBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv)
23593fea6afSBarry Smith {
2366fa18ffdSBarry Smith   Mat_MPIBAIJ    *b = (Mat_MPIBAIJ*)mat->data;
237dfbe8321SBarry Smith   PetscErrorCode ierr;
238b24ad042SBarry Smith   PetscInt       i,N = m*n*b->bs2;
2396fa18ffdSBarry Smith   MatScalar      *vsingle;
24093fea6afSBarry Smith 
24193fea6afSBarry Smith   PetscFunctionBegin;
2426fa18ffdSBarry Smith   if (N > b->setvalueslen) {
24305b42c5fSBarry Smith     ierr = PetscFree(b->setvaluescopy);CHKERRQ(ierr);
24482502324SSatish Balay     ierr = PetscMalloc(N*sizeof(MatScalar),&b->setvaluescopy);CHKERRQ(ierr);
2456fa18ffdSBarry Smith     b->setvalueslen  = N;
2466fa18ffdSBarry Smith   }
2476fa18ffdSBarry Smith   vsingle = b->setvaluescopy;
24893fea6afSBarry Smith   for (i=0; i<N; i++) {
24993fea6afSBarry Smith     vsingle[i] = v[i];
25093fea6afSBarry Smith   }
25193fea6afSBarry Smith   ierr = MatSetValuesBlocked_MPIBAIJ_MatScalar(mat,m,im,n,in,vsingle,addv);CHKERRQ(ierr);
25293fea6afSBarry Smith   PetscFunctionReturn(0);
25393fea6afSBarry Smith }
2546fa18ffdSBarry Smith 
2554a2ae208SSatish Balay #undef __FUNCT__
2564a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_MPIBAIJ_HT"
257b24ad042SBarry Smith PetscErrorCode MatSetValues_MPIBAIJ_HT(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv)
2586fa18ffdSBarry Smith {
2596fa18ffdSBarry Smith   Mat_MPIBAIJ    *b = (Mat_MPIBAIJ*)mat->data;
260dfbe8321SBarry Smith   PetscErrorCode ierr;
261b24ad042SBarry Smith   PetscInt       i,N = m*n;
2626fa18ffdSBarry Smith   MatScalar      *vsingle;
2636fa18ffdSBarry Smith 
2646fa18ffdSBarry Smith   PetscFunctionBegin;
2656fa18ffdSBarry Smith   if (N > b->setvalueslen) {
26605b42c5fSBarry Smith     ierr = PetscFree(b->setvaluescopy);CHKERRQ(ierr);
26782502324SSatish Balay     ierr = PetscMalloc(N*sizeof(MatScalar),&b->setvaluescopy);CHKERRQ(ierr);
2686fa18ffdSBarry Smith     b->setvalueslen  = N;
2696fa18ffdSBarry Smith   }
2706fa18ffdSBarry Smith   vsingle = b->setvaluescopy;
2716fa18ffdSBarry Smith   for (i=0; i<N; i++) {
2726fa18ffdSBarry Smith     vsingle[i] = v[i];
2736fa18ffdSBarry Smith   }
2746fa18ffdSBarry Smith   ierr = MatSetValues_MPIBAIJ_HT_MatScalar(mat,m,im,n,in,vsingle,addv);CHKERRQ(ierr);
2756fa18ffdSBarry Smith   PetscFunctionReturn(0);
2766fa18ffdSBarry Smith }
2776fa18ffdSBarry Smith 
2784a2ae208SSatish Balay #undef __FUNCT__
2794a2ae208SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_MPIBAIJ_HT"
280b24ad042SBarry Smith PetscErrorCode MatSetValuesBlocked_MPIBAIJ_HT(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv)
2816fa18ffdSBarry Smith {
2826fa18ffdSBarry Smith   Mat_MPIBAIJ    *b = (Mat_MPIBAIJ*)mat->data;
283dfbe8321SBarry Smith   PetscErrorCode ierr;
284b24ad042SBarry Smith   PetscInt       i,N = m*n*b->bs2;
2856fa18ffdSBarry Smith   MatScalar      *vsingle;
2866fa18ffdSBarry Smith 
2876fa18ffdSBarry Smith   PetscFunctionBegin;
2886fa18ffdSBarry Smith   if (N > b->setvalueslen) {
28905b42c5fSBarry Smith     ierr = PetscFree(b->setvaluescopy);CHKERRQ(ierr);
29082502324SSatish Balay     ierr = PetscMalloc(N*sizeof(MatScalar),&b->setvaluescopy);CHKERRQ(ierr);
2916fa18ffdSBarry Smith     b->setvalueslen  = N;
2926fa18ffdSBarry Smith   }
2936fa18ffdSBarry Smith   vsingle = b->setvaluescopy;
2946fa18ffdSBarry Smith   for (i=0; i<N; i++) {
2956fa18ffdSBarry Smith     vsingle[i] = v[i];
2966fa18ffdSBarry Smith   }
2976fa18ffdSBarry Smith   ierr = MatSetValuesBlocked_MPIBAIJ_HT_MatScalar(mat,m,im,n,in,vsingle,addv);CHKERRQ(ierr);
2986fa18ffdSBarry Smith   PetscFunctionReturn(0);
2996fa18ffdSBarry Smith }
30093fea6afSBarry Smith #endif
30193fea6afSBarry Smith 
3024a2ae208SSatish Balay #undef __FUNCT__
303e03e44c9SSatish Balay #define __FUNCT__ "MatSetValues_MPIBAIJ_MatScalar"
304b24ad042SBarry Smith PetscErrorCode MatSetValues_MPIBAIJ_MatScalar(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const MatScalar v[],InsertMode addv)
30593fea6afSBarry Smith {
30657b952d6SSatish Balay   Mat_MPIBAIJ    *baij = (Mat_MPIBAIJ*)mat->data;
30793fea6afSBarry Smith   MatScalar      value;
308273d9f13SBarry Smith   PetscTruth     roworiented = baij->roworiented;
309dfbe8321SBarry Smith   PetscErrorCode ierr;
310b24ad042SBarry Smith   PetscInt       i,j,row,col;
311899cda47SBarry Smith   PetscInt       rstart_orig=mat->rmap.rstart;
312899cda47SBarry Smith   PetscInt       rend_orig=mat->rmap.rend,cstart_orig=mat->cmap.rstart;
313899cda47SBarry Smith   PetscInt       cend_orig=mat->cmap.rend,bs=mat->rmap.bs;
31457b952d6SSatish Balay 
315eada6651SSatish Balay   /* Some Variables required in the macro */
31680c1aa95SSatish Balay   Mat            A = baij->A;
31780c1aa95SSatish Balay   Mat_SeqBAIJ    *a = (Mat_SeqBAIJ*)(A)->data;
318b24ad042SBarry Smith   PetscInt       *aimax=a->imax,*ai=a->i,*ailen=a->ilen,*aj=a->j;
3193eda8832SBarry Smith   MatScalar      *aa=a->a;
320ac7a638eSSatish Balay 
321ac7a638eSSatish Balay   Mat            B = baij->B;
322ac7a638eSSatish Balay   Mat_SeqBAIJ    *b = (Mat_SeqBAIJ*)(B)->data;
323b24ad042SBarry Smith   PetscInt       *bimax=b->imax,*bi=b->i,*bilen=b->ilen,*bj=b->j;
3243eda8832SBarry Smith   MatScalar      *ba=b->a;
325ac7a638eSSatish Balay 
326b24ad042SBarry Smith   PetscInt       *rp,ii,nrow,_i,rmax,N,brow,bcol;
327b24ad042SBarry Smith   PetscInt       low,high,t,ridx,cidx,bs2=a->bs2;
3283eda8832SBarry Smith   MatScalar      *ap,*bap;
32980c1aa95SSatish Balay 
330d64ed03dSBarry Smith   PetscFunctionBegin;
33157b952d6SSatish Balay   for (i=0; i<m; i++) {
3325ef9f2a5SBarry Smith     if (im[i] < 0) continue;
3332515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
334899cda47SBarry Smith     if (im[i] >= mat->rmap.N) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],mat->rmap.N-1);
335639f9d9dSBarry Smith #endif
33657b952d6SSatish Balay     if (im[i] >= rstart_orig && im[i] < rend_orig) {
33757b952d6SSatish Balay       row = im[i] - rstart_orig;
33857b952d6SSatish Balay       for (j=0; j<n; j++) {
33957b952d6SSatish Balay         if (in[j] >= cstart_orig && in[j] < cend_orig){
34057b952d6SSatish Balay           col = in[j] - cstart_orig;
34157b952d6SSatish Balay           if (roworiented) value = v[i*n+j]; else value = v[i+j*m];
342f5e9677aSSatish Balay           MatSetValues_SeqBAIJ_A_Private(row,col,value,addv);
34380c1aa95SSatish Balay           /* ierr = MatSetValues_SeqBAIJ(baij->A,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */
34473959e64SBarry Smith         } else if (in[j] < 0) continue;
3452515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
346899cda47SBarry Smith         else if (in[j] >= mat->cmap.N) {SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",in[i],mat->cmap.N-1);}
347639f9d9dSBarry Smith #endif
34857b952d6SSatish Balay         else {
34957b952d6SSatish Balay           if (mat->was_assembled) {
350905e6a2fSBarry Smith             if (!baij->colmap) {
351905e6a2fSBarry Smith               ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
352905e6a2fSBarry Smith             }
353aa482453SBarry Smith #if defined (PETSC_USE_CTABLE)
3540f5bd95cSBarry Smith             ierr = PetscTableFind(baij->colmap,in[j]/bs + 1,&col);CHKERRQ(ierr);
355bba1ac68SSatish Balay             col  = col - 1;
35648e59246SSatish Balay #else
357bba1ac68SSatish Balay             col = baij->colmap[in[j]/bs] - 1;
35848e59246SSatish Balay #endif
35957b952d6SSatish Balay             if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) {
36057b952d6SSatish Balay               ierr = DisAssemble_MPIBAIJ(mat);CHKERRQ(ierr);
3618295de27SSatish Balay               col =  in[j];
3629bf004c3SSatish Balay               /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */
3639bf004c3SSatish Balay               B = baij->B;
3649bf004c3SSatish Balay               b = (Mat_SeqBAIJ*)(B)->data;
3659bf004c3SSatish Balay               bimax=b->imax;bi=b->i;bilen=b->ilen;bj=b->j;
3669bf004c3SSatish Balay               ba=b->a;
367bba1ac68SSatish Balay             } else col += in[j]%bs;
3688295de27SSatish Balay           } else col = in[j];
36957b952d6SSatish Balay           if (roworiented) value = v[i*n+j]; else value = v[i+j*m];
37090da58bdSSatish Balay           MatSetValues_SeqBAIJ_B_Private(row,col,value,addv);
37190da58bdSSatish Balay           /* ierr = MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */
37257b952d6SSatish Balay         }
37357b952d6SSatish Balay       }
374d64ed03dSBarry Smith     } else {
37590f02eecSBarry Smith       if (!baij->donotstash) {
376ff2fd236SBarry Smith         if (roworiented) {
3776fa18ffdSBarry Smith           ierr = MatStashValuesRow_Private(&mat->stash,im[i],n,in,v+i*n);CHKERRQ(ierr);
378ff2fd236SBarry Smith         } else {
3796fa18ffdSBarry Smith           ierr = MatStashValuesCol_Private(&mat->stash,im[i],n,in,v+i,m);CHKERRQ(ierr);
38057b952d6SSatish Balay         }
38157b952d6SSatish Balay       }
38257b952d6SSatish Balay     }
38390f02eecSBarry Smith   }
3843a40ed3dSBarry Smith   PetscFunctionReturn(0);
38557b952d6SSatish Balay }
38657b952d6SSatish Balay 
3874a2ae208SSatish Balay #undef __FUNCT__
3884a2ae208SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_MPIBAIJ_MatScalar"
389b24ad042SBarry Smith PetscErrorCode MatSetValuesBlocked_MPIBAIJ_MatScalar(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const MatScalar v[],InsertMode addv)
390ab26458aSBarry Smith {
391ab26458aSBarry Smith   Mat_MPIBAIJ     *baij = (Mat_MPIBAIJ*)mat->data;
392f15d580aSBarry Smith   const MatScalar *value;
393f15d580aSBarry Smith   MatScalar       *barray=baij->barray;
394273d9f13SBarry Smith   PetscTruth      roworiented = baij->roworiented;
395dfbe8321SBarry Smith   PetscErrorCode  ierr;
396899cda47SBarry Smith   PetscInt        i,j,ii,jj,row,col,rstart=baij->rstartbs;
397899cda47SBarry Smith   PetscInt        rend=baij->rendbs,cstart=baij->cstartbs,stepval;
398899cda47SBarry Smith   PetscInt        cend=baij->cendbs,bs=mat->rmap.bs,bs2=baij->bs2;
399ab26458aSBarry Smith 
400b16ae2b1SBarry Smith   PetscFunctionBegin;
40130793edcSSatish Balay   if(!barray) {
40282502324SSatish Balay     ierr         = PetscMalloc(bs2*sizeof(MatScalar),&barray);CHKERRQ(ierr);
40382502324SSatish Balay     baij->barray = barray;
40430793edcSSatish Balay   }
40530793edcSSatish Balay 
406ab26458aSBarry Smith   if (roworiented) {
407ab26458aSBarry Smith     stepval = (n-1)*bs;
408ab26458aSBarry Smith   } else {
409ab26458aSBarry Smith     stepval = (m-1)*bs;
410ab26458aSBarry Smith   }
411ab26458aSBarry Smith   for (i=0; i<m; i++) {
4125ef9f2a5SBarry Smith     if (im[i] < 0) continue;
4132515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
41477431f27SBarry Smith     if (im[i] >= baij->Mbs) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large, row %D max %D",im[i],baij->Mbs-1);
415ab26458aSBarry Smith #endif
416ab26458aSBarry Smith     if (im[i] >= rstart && im[i] < rend) {
417ab26458aSBarry Smith       row = im[i] - rstart;
418ab26458aSBarry Smith       for (j=0; j<n; j++) {
41915b57d14SSatish Balay         /* If NumCol = 1 then a copy is not required */
42015b57d14SSatish Balay         if ((roworiented) && (n == 1)) {
421f15d580aSBarry Smith           barray = (MatScalar*)v + i*bs2;
42215b57d14SSatish Balay         } else if((!roworiented) && (m == 1)) {
423f15d580aSBarry Smith           barray = (MatScalar*)v + j*bs2;
42415b57d14SSatish Balay         } else { /* Here a copy is required */
425ab26458aSBarry Smith           if (roworiented) {
426ab26458aSBarry Smith             value = v + i*(stepval+bs)*bs + j*bs;
427ab26458aSBarry Smith           } else {
428ab26458aSBarry Smith             value = v + j*(stepval+bs)*bs + i*bs;
429abef11f7SSatish Balay           }
43047513183SBarry Smith           for (ii=0; ii<bs; ii++,value+=stepval) {
43147513183SBarry Smith             for (jj=0; jj<bs; jj++) {
43230793edcSSatish Balay               *barray++  = *value++;
43347513183SBarry Smith             }
43447513183SBarry Smith           }
43530793edcSSatish Balay           barray -=bs2;
43615b57d14SSatish Balay         }
437abef11f7SSatish Balay 
438abef11f7SSatish Balay         if (in[j] >= cstart && in[j] < cend){
439abef11f7SSatish Balay           col  = in[j] - cstart;
44093fea6afSBarry Smith           ierr = MatSetValuesBlocked_SeqBAIJ_MatScalar(baij->A,1,&row,1,&col,barray,addv);CHKERRQ(ierr);
441ab26458aSBarry Smith         }
4425ef9f2a5SBarry Smith         else if (in[j] < 0) continue;
4432515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
44477431f27SBarry Smith         else if (in[j] >= baij->Nbs) {SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large, col %D max %D",in[j],baij->Nbs-1);}
445ab26458aSBarry Smith #endif
446ab26458aSBarry Smith         else {
447ab26458aSBarry Smith           if (mat->was_assembled) {
448ab26458aSBarry Smith             if (!baij->colmap) {
449ab26458aSBarry Smith               ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
450ab26458aSBarry Smith             }
451a5eb4965SSatish Balay 
4522515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
453aa482453SBarry Smith #if defined (PETSC_USE_CTABLE)
454b24ad042SBarry Smith             { PetscInt data;
4550f5bd95cSBarry Smith               ierr = PetscTableFind(baij->colmap,in[j]+1,&data);CHKERRQ(ierr);
45629bbc08cSBarry Smith               if ((data - 1) % bs) SETERRQ(PETSC_ERR_PLIB,"Incorrect colmap");
457fa46199cSSatish Balay             }
45848e59246SSatish Balay #else
45929bbc08cSBarry Smith             if ((baij->colmap[in[j]] - 1) % bs) SETERRQ(PETSC_ERR_PLIB,"Incorrect colmap");
460a5eb4965SSatish Balay #endif
46148e59246SSatish Balay #endif
462aa482453SBarry Smith #if defined (PETSC_USE_CTABLE)
4630f5bd95cSBarry Smith 	    ierr = PetscTableFind(baij->colmap,in[j]+1,&col);CHKERRQ(ierr);
464fa46199cSSatish Balay             col  = (col - 1)/bs;
46548e59246SSatish Balay #else
466a5eb4965SSatish Balay             col = (baij->colmap[in[j]] - 1)/bs;
46748e59246SSatish Balay #endif
468ab26458aSBarry Smith             if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) {
469ab26458aSBarry Smith               ierr = DisAssemble_MPIBAIJ(mat);CHKERRQ(ierr);
470ab26458aSBarry Smith               col =  in[j];
471ab26458aSBarry Smith             }
472ab26458aSBarry Smith           }
473ab26458aSBarry Smith           else col = in[j];
47493fea6afSBarry Smith           ierr = MatSetValuesBlocked_SeqBAIJ_MatScalar(baij->B,1,&row,1,&col,barray,addv);CHKERRQ(ierr);
475ab26458aSBarry Smith         }
476ab26458aSBarry Smith       }
477d64ed03dSBarry Smith     } else {
478ab26458aSBarry Smith       if (!baij->donotstash) {
479ff2fd236SBarry Smith         if (roworiented) {
4806fa18ffdSBarry Smith           ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
481ff2fd236SBarry Smith         } else {
4826fa18ffdSBarry Smith           ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
483ff2fd236SBarry Smith         }
484abef11f7SSatish Balay       }
485ab26458aSBarry Smith     }
486ab26458aSBarry Smith   }
4873a40ed3dSBarry Smith   PetscFunctionReturn(0);
488ab26458aSBarry Smith }
4896fa18ffdSBarry Smith 
4900bdbc534SSatish Balay #define HASH_KEY 0.6180339887
491b24ad042SBarry Smith #define HASH(size,key,tmp) (tmp = (key)*HASH_KEY,(PetscInt)((size)*(tmp-(PetscInt)tmp)))
492b24ad042SBarry Smith /* #define HASH(size,key) ((PetscInt)((size)*fmod(((key)*HASH_KEY),1))) */
493b24ad042SBarry Smith /* #define HASH(size,key,tmp) ((PetscInt)((size)*fmod(((key)*HASH_KEY),1))) */
4944a2ae208SSatish Balay #undef __FUNCT__
4954a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_MPIBAIJ_HT_MatScalar"
496b24ad042SBarry Smith PetscErrorCode MatSetValues_MPIBAIJ_HT_MatScalar(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const MatScalar v[],InsertMode addv)
4970bdbc534SSatish Balay {
4980bdbc534SSatish Balay   Mat_MPIBAIJ    *baij = (Mat_MPIBAIJ*)mat->data;
499273d9f13SBarry Smith   PetscTruth     roworiented = baij->roworiented;
500dfbe8321SBarry Smith   PetscErrorCode ierr;
501b24ad042SBarry Smith   PetscInt       i,j,row,col;
502899cda47SBarry Smith   PetscInt       rstart_orig=mat->rmap.rstart;
503899cda47SBarry Smith   PetscInt       rend_orig=mat->rmap.rend,Nbs=baij->Nbs;
504899cda47SBarry Smith   PetscInt       h1,key,size=baij->ht_size,bs=mat->rmap.bs,*HT=baij->ht,idx;
505329f5518SBarry Smith   PetscReal      tmp;
5063eda8832SBarry Smith   MatScalar      **HD = baij->hd,value;
5072515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
508b24ad042SBarry Smith   PetscInt       total_ct=baij->ht_total_ct,insert_ct=baij->ht_insert_ct;
5094a15367fSSatish Balay #endif
5100bdbc534SSatish Balay 
5110bdbc534SSatish Balay   PetscFunctionBegin;
5120bdbc534SSatish Balay 
5130bdbc534SSatish Balay   for (i=0; i<m; i++) {
5142515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
51529bbc08cSBarry Smith     if (im[i] < 0) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Negative row");
516899cda47SBarry Smith     if (im[i] >= mat->rmap.N) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],mat->rmap.N-1);
5170bdbc534SSatish Balay #endif
5180bdbc534SSatish Balay       row = im[i];
519c2760754SSatish Balay     if (row >= rstart_orig && row < rend_orig) {
5200bdbc534SSatish Balay       for (j=0; j<n; j++) {
5210bdbc534SSatish Balay         col = in[j];
5226fa18ffdSBarry Smith         if (roworiented) value = v[i*n+j]; else value = v[i+j*m];
523b24ad042SBarry Smith         /* Look up PetscInto the Hash Table */
524c2760754SSatish Balay         key = (row/bs)*Nbs+(col/bs)+1;
525c2760754SSatish Balay         h1  = HASH(size,key,tmp);
5260bdbc534SSatish Balay 
527c2760754SSatish Balay 
528c2760754SSatish Balay         idx = h1;
5292515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
530187ce0cbSSatish Balay         insert_ct++;
531187ce0cbSSatish Balay         total_ct++;
532187ce0cbSSatish Balay         if (HT[idx] != key) {
533187ce0cbSSatish Balay           for (idx=h1; (idx<size) && (HT[idx]!=key); idx++,total_ct++);
534187ce0cbSSatish Balay           if (idx == size) {
535187ce0cbSSatish Balay             for (idx=0; (idx<h1) && (HT[idx]!=key); idx++,total_ct++);
536187ce0cbSSatish Balay             if (idx == h1) {
53777431f27SBarry Smith               SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"(%D,%D) has no entry in the hash table", row, col);
538187ce0cbSSatish Balay             }
539187ce0cbSSatish Balay           }
540187ce0cbSSatish Balay         }
541187ce0cbSSatish Balay #else
542c2760754SSatish Balay         if (HT[idx] != key) {
543c2760754SSatish Balay           for (idx=h1; (idx<size) && (HT[idx]!=key); idx++);
544c2760754SSatish Balay           if (idx == size) {
545c2760754SSatish Balay             for (idx=0; (idx<h1) && (HT[idx]!=key); idx++);
546c2760754SSatish Balay             if (idx == h1) {
54777431f27SBarry Smith               SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"(%D,%D) has no entry in the hash table", row, col);
548c2760754SSatish Balay             }
549c2760754SSatish Balay           }
550c2760754SSatish Balay         }
551187ce0cbSSatish Balay #endif
552c2760754SSatish Balay         /* A HASH table entry is found, so insert the values at the correct address */
553c2760754SSatish Balay         if (addv == ADD_VALUES) *(HD[idx]+ (col % bs)*bs + (row % bs)) += value;
554c2760754SSatish Balay         else                    *(HD[idx]+ (col % bs)*bs + (row % bs))  = value;
5550bdbc534SSatish Balay       }
5560bdbc534SSatish Balay     } else {
5570bdbc534SSatish Balay       if (!baij->donotstash) {
558ff2fd236SBarry Smith         if (roworiented) {
5598798bf22SSatish Balay           ierr = MatStashValuesRow_Private(&mat->stash,im[i],n,in,v+i*n);CHKERRQ(ierr);
560ff2fd236SBarry Smith         } else {
5618798bf22SSatish Balay           ierr = MatStashValuesCol_Private(&mat->stash,im[i],n,in,v+i,m);CHKERRQ(ierr);
5620bdbc534SSatish Balay         }
5630bdbc534SSatish Balay       }
5640bdbc534SSatish Balay     }
5650bdbc534SSatish Balay   }
5662515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
567187ce0cbSSatish Balay   baij->ht_total_ct = total_ct;
568187ce0cbSSatish Balay   baij->ht_insert_ct = insert_ct;
569187ce0cbSSatish Balay #endif
5700bdbc534SSatish Balay   PetscFunctionReturn(0);
5710bdbc534SSatish Balay }
5720bdbc534SSatish Balay 
5734a2ae208SSatish Balay #undef __FUNCT__
5744a2ae208SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_MPIBAIJ_HT_MatScalar"
575b24ad042SBarry Smith PetscErrorCode MatSetValuesBlocked_MPIBAIJ_HT_MatScalar(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const MatScalar v[],InsertMode addv)
5760bdbc534SSatish Balay {
5770bdbc534SSatish Balay   Mat_MPIBAIJ     *baij = (Mat_MPIBAIJ*)mat->data;
578273d9f13SBarry Smith   PetscTruth      roworiented = baij->roworiented;
579dfbe8321SBarry Smith   PetscErrorCode  ierr;
580b24ad042SBarry Smith   PetscInt        i,j,ii,jj,row,col;
581899cda47SBarry Smith   PetscInt        rstart=baij->rstartbs;
582899cda47SBarry Smith   PetscInt        rend=mat->rmap.rend,stepval,bs=mat->rmap.bs,bs2=baij->bs2;
583b24ad042SBarry Smith   PetscInt        h1,key,size=baij->ht_size,idx,*HT=baij->ht,Nbs=baij->Nbs;
584329f5518SBarry Smith   PetscReal       tmp;
5853eda8832SBarry Smith   MatScalar       **HD = baij->hd,*baij_a;
586f15d580aSBarry Smith   const MatScalar *v_t,*value;
5872515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
588b24ad042SBarry Smith   PetscInt        total_ct=baij->ht_total_ct,insert_ct=baij->ht_insert_ct;
5894a15367fSSatish Balay #endif
5900bdbc534SSatish Balay 
591d0a41580SSatish Balay   PetscFunctionBegin;
592d0a41580SSatish Balay 
5930bdbc534SSatish Balay   if (roworiented) {
5940bdbc534SSatish Balay     stepval = (n-1)*bs;
5950bdbc534SSatish Balay   } else {
5960bdbc534SSatish Balay     stepval = (m-1)*bs;
5970bdbc534SSatish Balay   }
5980bdbc534SSatish Balay   for (i=0; i<m; i++) {
5992515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
60077431f27SBarry Smith     if (im[i] < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %D",im[i]);
60177431f27SBarry Smith     if (im[i] >= baij->Mbs) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],baij->Mbs-1);
6020bdbc534SSatish Balay #endif
6030bdbc534SSatish Balay     row   = im[i];
604187ce0cbSSatish Balay     v_t   = v + i*bs2;
605c2760754SSatish Balay     if (row >= rstart && row < rend) {
6060bdbc534SSatish Balay       for (j=0; j<n; j++) {
6070bdbc534SSatish Balay         col = in[j];
6080bdbc534SSatish Balay 
6090bdbc534SSatish Balay         /* Look up into the Hash Table */
610c2760754SSatish Balay         key = row*Nbs+col+1;
611c2760754SSatish Balay         h1  = HASH(size,key,tmp);
6120bdbc534SSatish Balay 
613c2760754SSatish Balay         idx = h1;
6142515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
615187ce0cbSSatish Balay         total_ct++;
616187ce0cbSSatish Balay         insert_ct++;
617187ce0cbSSatish Balay        if (HT[idx] != key) {
618187ce0cbSSatish Balay           for (idx=h1; (idx<size) && (HT[idx]!=key); idx++,total_ct++);
619187ce0cbSSatish Balay           if (idx == size) {
620187ce0cbSSatish Balay             for (idx=0; (idx<h1) && (HT[idx]!=key); idx++,total_ct++);
621187ce0cbSSatish Balay             if (idx == h1) {
62277431f27SBarry Smith               SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"(%D,%D) has no entry in the hash table", row, col);
623187ce0cbSSatish Balay             }
624187ce0cbSSatish Balay           }
625187ce0cbSSatish Balay         }
626187ce0cbSSatish Balay #else
627c2760754SSatish Balay         if (HT[idx] != key) {
628c2760754SSatish Balay           for (idx=h1; (idx<size) && (HT[idx]!=key); idx++);
629c2760754SSatish Balay           if (idx == size) {
630c2760754SSatish Balay             for (idx=0; (idx<h1) && (HT[idx]!=key); idx++);
631c2760754SSatish Balay             if (idx == h1) {
63277431f27SBarry Smith               SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"(%D,%D) has no entry in the hash table", row, col);
633c2760754SSatish Balay             }
634c2760754SSatish Balay           }
635c2760754SSatish Balay         }
636187ce0cbSSatish Balay #endif
637c2760754SSatish Balay         baij_a = HD[idx];
6380bdbc534SSatish Balay         if (roworiented) {
639c2760754SSatish Balay           /*value = v + i*(stepval+bs)*bs + j*bs;*/
640187ce0cbSSatish Balay           /* value = v + (i*(stepval+bs)+j)*bs; */
641187ce0cbSSatish Balay           value = v_t;
642187ce0cbSSatish Balay           v_t  += bs;
643fef45726SSatish Balay           if (addv == ADD_VALUES) {
644c2760754SSatish Balay             for (ii=0; ii<bs; ii++,value+=stepval) {
645c2760754SSatish Balay               for (jj=ii; jj<bs2; jj+=bs) {
646fef45726SSatish Balay                 baij_a[jj]  += *value++;
647b4cc0f5aSSatish Balay               }
648b4cc0f5aSSatish Balay             }
649fef45726SSatish Balay           } else {
650c2760754SSatish Balay             for (ii=0; ii<bs; ii++,value+=stepval) {
651c2760754SSatish Balay               for (jj=ii; jj<bs2; jj+=bs) {
652fef45726SSatish Balay                 baij_a[jj]  = *value++;
653fef45726SSatish Balay               }
654fef45726SSatish Balay             }
655fef45726SSatish Balay           }
6560bdbc534SSatish Balay         } else {
6570bdbc534SSatish Balay           value = v + j*(stepval+bs)*bs + i*bs;
658fef45726SSatish Balay           if (addv == ADD_VALUES) {
659b4cc0f5aSSatish Balay             for (ii=0; ii<bs; ii++,value+=stepval,baij_a+=bs) {
6600bdbc534SSatish Balay               for (jj=0; jj<bs; jj++) {
661fef45726SSatish Balay                 baij_a[jj]  += *value++;
662fef45726SSatish Balay               }
663fef45726SSatish Balay             }
664fef45726SSatish Balay           } else {
665fef45726SSatish Balay             for (ii=0; ii<bs; ii++,value+=stepval,baij_a+=bs) {
666fef45726SSatish Balay               for (jj=0; jj<bs; jj++) {
667fef45726SSatish Balay                 baij_a[jj]  = *value++;
668fef45726SSatish Balay               }
669b4cc0f5aSSatish Balay             }
6700bdbc534SSatish Balay           }
6710bdbc534SSatish Balay         }
6720bdbc534SSatish Balay       }
6730bdbc534SSatish Balay     } else {
6740bdbc534SSatish Balay       if (!baij->donotstash) {
6750bdbc534SSatish Balay         if (roworiented) {
6768798bf22SSatish Balay           ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
6770bdbc534SSatish Balay         } else {
6788798bf22SSatish Balay           ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
6790bdbc534SSatish Balay         }
6800bdbc534SSatish Balay       }
6810bdbc534SSatish Balay     }
6820bdbc534SSatish Balay   }
6832515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
684187ce0cbSSatish Balay   baij->ht_total_ct = total_ct;
685187ce0cbSSatish Balay   baij->ht_insert_ct = insert_ct;
686187ce0cbSSatish Balay #endif
6870bdbc534SSatish Balay   PetscFunctionReturn(0);
6880bdbc534SSatish Balay }
689133cdb44SSatish Balay 
6904a2ae208SSatish Balay #undef __FUNCT__
6914a2ae208SSatish Balay #define __FUNCT__ "MatGetValues_MPIBAIJ"
692b24ad042SBarry Smith PetscErrorCode MatGetValues_MPIBAIJ(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[])
693d6de1c52SSatish Balay {
694d6de1c52SSatish Balay   Mat_MPIBAIJ    *baij = (Mat_MPIBAIJ*)mat->data;
6956849ba73SBarry Smith   PetscErrorCode ierr;
696899cda47SBarry Smith   PetscInt       bs=mat->rmap.bs,i,j,bsrstart = mat->rmap.rstart,bsrend = mat->rmap.rend;
697899cda47SBarry Smith   PetscInt       bscstart = mat->cmap.rstart,bscend = mat->cmap.rend,row,col,data;
698d6de1c52SSatish Balay 
699133cdb44SSatish Balay   PetscFunctionBegin;
700d6de1c52SSatish Balay   for (i=0; i<m; i++) {
70177431f27SBarry Smith     if (idxm[i] < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %D",idxm[i]);
702899cda47SBarry Smith     if (idxm[i] >= mat->rmap.N) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",idxm[i],mat->rmap.N-1);
703d6de1c52SSatish Balay     if (idxm[i] >= bsrstart && idxm[i] < bsrend) {
704d6de1c52SSatish Balay       row = idxm[i] - bsrstart;
705d6de1c52SSatish Balay       for (j=0; j<n; j++) {
70677431f27SBarry Smith         if (idxn[j] < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Negative column: %D",idxn[j]);
707899cda47SBarry Smith         if (idxn[j] >= mat->cmap.N) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",idxn[j],mat->cmap.N-1);
708d6de1c52SSatish Balay         if (idxn[j] >= bscstart && idxn[j] < bscend){
709d6de1c52SSatish Balay           col = idxn[j] - bscstart;
71098dd23e9SBarry Smith           ierr = MatGetValues_SeqBAIJ(baij->A,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr);
711d64ed03dSBarry Smith         } else {
712905e6a2fSBarry Smith           if (!baij->colmap) {
713905e6a2fSBarry Smith             ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
714905e6a2fSBarry Smith           }
715aa482453SBarry Smith #if defined (PETSC_USE_CTABLE)
7160f5bd95cSBarry Smith           ierr = PetscTableFind(baij->colmap,idxn[j]/bs+1,&data);CHKERRQ(ierr);
717fa46199cSSatish Balay           data --;
71848e59246SSatish Balay #else
71948e59246SSatish Balay           data = baij->colmap[idxn[j]/bs]-1;
72048e59246SSatish Balay #endif
72148e59246SSatish Balay           if((data < 0) || (baij->garray[data/bs] != idxn[j]/bs)) *(v+i*n+j) = 0.0;
722d9d09a02SSatish Balay           else {
72348e59246SSatish Balay             col  = data + idxn[j]%bs;
72498dd23e9SBarry Smith             ierr = MatGetValues_SeqBAIJ(baij->B,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr);
725d6de1c52SSatish Balay           }
726d6de1c52SSatish Balay         }
727d6de1c52SSatish Balay       }
728d64ed03dSBarry Smith     } else {
72929bbc08cSBarry Smith       SETERRQ(PETSC_ERR_SUP,"Only local values currently supported");
730d6de1c52SSatish Balay     }
731d6de1c52SSatish Balay   }
7323a40ed3dSBarry Smith  PetscFunctionReturn(0);
733d6de1c52SSatish Balay }
734d6de1c52SSatish Balay 
7354a2ae208SSatish Balay #undef __FUNCT__
7364a2ae208SSatish Balay #define __FUNCT__ "MatNorm_MPIBAIJ"
737dfbe8321SBarry Smith PetscErrorCode MatNorm_MPIBAIJ(Mat mat,NormType type,PetscReal *nrm)
738d6de1c52SSatish Balay {
739d6de1c52SSatish Balay   Mat_MPIBAIJ    *baij = (Mat_MPIBAIJ*)mat->data;
740d6de1c52SSatish Balay   Mat_SeqBAIJ    *amat = (Mat_SeqBAIJ*)baij->A->data,*bmat = (Mat_SeqBAIJ*)baij->B->data;
741dfbe8321SBarry Smith   PetscErrorCode ierr;
742899cda47SBarry Smith   PetscInt       i,j,bs2=baij->bs2,bs=baij->A->rmap.bs,nz,row,col;
743329f5518SBarry Smith   PetscReal      sum = 0.0;
7443eda8832SBarry Smith   MatScalar      *v;
745d6de1c52SSatish Balay 
746d64ed03dSBarry Smith   PetscFunctionBegin;
747d6de1c52SSatish Balay   if (baij->size == 1) {
748064f8208SBarry Smith     ierr =  MatNorm(baij->A,type,nrm);CHKERRQ(ierr);
749d6de1c52SSatish Balay   } else {
750d6de1c52SSatish Balay     if (type == NORM_FROBENIUS) {
751d6de1c52SSatish Balay       v = amat->a;
7528a62d963SHong Zhang       nz = amat->nz*bs2;
7538a62d963SHong Zhang       for (i=0; i<nz; i++) {
754aa482453SBarry Smith #if defined(PETSC_USE_COMPLEX)
755329f5518SBarry Smith         sum += PetscRealPart(PetscConj(*v)*(*v)); v++;
756d6de1c52SSatish Balay #else
757d6de1c52SSatish Balay         sum += (*v)*(*v); v++;
758d6de1c52SSatish Balay #endif
759d6de1c52SSatish Balay       }
760d6de1c52SSatish Balay       v = bmat->a;
7618a62d963SHong Zhang       nz = bmat->nz*bs2;
7628a62d963SHong Zhang       for (i=0; i<nz; i++) {
763aa482453SBarry Smith #if defined(PETSC_USE_COMPLEX)
764329f5518SBarry Smith         sum += PetscRealPart(PetscConj(*v)*(*v)); v++;
765d6de1c52SSatish Balay #else
766d6de1c52SSatish Balay         sum += (*v)*(*v); v++;
767d6de1c52SSatish Balay #endif
768d6de1c52SSatish Balay       }
769064f8208SBarry Smith       ierr = MPI_Allreduce(&sum,nrm,1,MPIU_REAL,MPI_SUM,mat->comm);CHKERRQ(ierr);
770064f8208SBarry Smith       *nrm = sqrt(*nrm);
7718a62d963SHong Zhang     } else if (type == NORM_1) { /* max column sum */
7728a62d963SHong Zhang       PetscReal *tmp,*tmp2;
773899cda47SBarry Smith       PetscInt  *jj,*garray=baij->garray,cstart=baij->rstartbs;
774899cda47SBarry Smith       ierr = PetscMalloc((2*mat->cmap.N+1)*sizeof(PetscReal),&tmp);CHKERRQ(ierr);
775899cda47SBarry Smith       tmp2 = tmp + mat->cmap.N;
776899cda47SBarry Smith       ierr = PetscMemzero(tmp,mat->cmap.N*sizeof(PetscReal));CHKERRQ(ierr);
7778a62d963SHong Zhang       v = amat->a; jj = amat->j;
7788a62d963SHong Zhang       for (i=0; i<amat->nz; i++) {
7798a62d963SHong Zhang         for (j=0; j<bs; j++){
7808a62d963SHong Zhang           col = bs*(cstart + *jj) + j; /* column index */
7818a62d963SHong Zhang           for (row=0; row<bs; row++){
7828a62d963SHong Zhang             tmp[col] += PetscAbsScalar(*v);  v++;
7838a62d963SHong Zhang           }
7848a62d963SHong Zhang         }
7858a62d963SHong Zhang         jj++;
7868a62d963SHong Zhang       }
7878a62d963SHong Zhang       v = bmat->a; jj = bmat->j;
7888a62d963SHong Zhang       for (i=0; i<bmat->nz; i++) {
7898a62d963SHong Zhang         for (j=0; j<bs; j++){
7908a62d963SHong Zhang           col = bs*garray[*jj] + j;
7918a62d963SHong Zhang           for (row=0; row<bs; row++){
7928a62d963SHong Zhang             tmp[col] += PetscAbsScalar(*v); v++;
7938a62d963SHong Zhang           }
7948a62d963SHong Zhang         }
7958a62d963SHong Zhang         jj++;
7968a62d963SHong Zhang       }
797899cda47SBarry Smith       ierr = MPI_Allreduce(tmp,tmp2,mat->cmap.N,MPIU_REAL,MPI_SUM,mat->comm);CHKERRQ(ierr);
7988a62d963SHong Zhang       *nrm = 0.0;
799899cda47SBarry Smith       for (j=0; j<mat->cmap.N; j++) {
8008a62d963SHong Zhang         if (tmp2[j] > *nrm) *nrm = tmp2[j];
8018a62d963SHong Zhang       }
8028a62d963SHong Zhang       ierr = PetscFree(tmp);CHKERRQ(ierr);
8038a62d963SHong Zhang     } else if (type == NORM_INFINITY) { /* max row sum */
804577dd1f9SKris Buschelman       PetscReal *sums;
805577dd1f9SKris Buschelman       ierr = PetscMalloc(bs*sizeof(PetscReal),&sums);CHKERRQ(ierr)
8068a62d963SHong Zhang       sum = 0.0;
8078a62d963SHong Zhang       for (j=0; j<amat->mbs; j++) {
8088a62d963SHong Zhang         for (row=0; row<bs; row++) sums[row] = 0.0;
8098a62d963SHong Zhang         v = amat->a + bs2*amat->i[j];
8108a62d963SHong Zhang         nz = amat->i[j+1]-amat->i[j];
8118a62d963SHong Zhang         for (i=0; i<nz; i++) {
8128a62d963SHong Zhang           for (col=0; col<bs; col++){
8138a62d963SHong Zhang             for (row=0; row<bs; row++){
8148a62d963SHong Zhang               sums[row] += PetscAbsScalar(*v); v++;
8158a62d963SHong Zhang             }
8168a62d963SHong Zhang           }
8178a62d963SHong Zhang         }
8188a62d963SHong Zhang         v = bmat->a + bs2*bmat->i[j];
8198a62d963SHong Zhang         nz = bmat->i[j+1]-bmat->i[j];
8208a62d963SHong Zhang         for (i=0; i<nz; i++) {
8218a62d963SHong Zhang           for (col=0; col<bs; col++){
8228a62d963SHong Zhang             for (row=0; row<bs; row++){
8238a62d963SHong Zhang               sums[row] += PetscAbsScalar(*v); v++;
8248a62d963SHong Zhang             }
8258a62d963SHong Zhang           }
8268a62d963SHong Zhang         }
8278a62d963SHong Zhang         for (row=0; row<bs; row++){
8288a62d963SHong Zhang           if (sums[row] > sum) sum = sums[row];
8298a62d963SHong Zhang         }
8308a62d963SHong Zhang       }
8318a62d963SHong Zhang       ierr = MPI_Allreduce(&sum,nrm,1,MPIU_REAL,MPI_MAX,mat->comm);CHKERRQ(ierr);
832577dd1f9SKris Buschelman       ierr = PetscFree(sums);CHKERRQ(ierr);
833d64ed03dSBarry Smith     } else {
83429bbc08cSBarry Smith       SETERRQ(PETSC_ERR_SUP,"No support for this norm yet");
835d6de1c52SSatish Balay     }
836d64ed03dSBarry Smith   }
8373a40ed3dSBarry Smith   PetscFunctionReturn(0);
838d6de1c52SSatish Balay }
83957b952d6SSatish Balay 
840fef45726SSatish Balay /*
841fef45726SSatish Balay   Creates the hash table, and sets the table
842fef45726SSatish Balay   This table is created only once.
843fef45726SSatish Balay   If new entried need to be added to the matrix
844fef45726SSatish Balay   then the hash table has to be destroyed and
845fef45726SSatish Balay   recreated.
846fef45726SSatish Balay */
8474a2ae208SSatish Balay #undef __FUNCT__
8484a2ae208SSatish Balay #define __FUNCT__ "MatCreateHashTable_MPIBAIJ_Private"
849dfbe8321SBarry Smith PetscErrorCode MatCreateHashTable_MPIBAIJ_Private(Mat mat,PetscReal factor)
850596b8d2eSBarry Smith {
851596b8d2eSBarry Smith   Mat_MPIBAIJ    *baij = (Mat_MPIBAIJ*)mat->data;
852596b8d2eSBarry Smith   Mat            A = baij->A,B=baij->B;
853596b8d2eSBarry Smith   Mat_SeqBAIJ    *a=(Mat_SeqBAIJ *)A->data,*b=(Mat_SeqBAIJ *)B->data;
854b24ad042SBarry Smith   PetscInt       i,j,k,nz=a->nz+b->nz,h1,*ai=a->i,*aj=a->j,*bi=b->i,*bj=b->j;
8556849ba73SBarry Smith   PetscErrorCode ierr;
856899cda47SBarry Smith   PetscInt       size,bs2=baij->bs2,rstart=baij->rstartbs;
857899cda47SBarry Smith   PetscInt       cstart=baij->cstartbs,*garray=baij->garray,row,col,Nbs=baij->Nbs;
858b24ad042SBarry Smith   PetscInt       *HT,key;
8593eda8832SBarry Smith   MatScalar      **HD;
860329f5518SBarry Smith   PetscReal      tmp;
8616cf91177SBarry Smith #if defined(PETSC_USE_INFO)
862b24ad042SBarry Smith   PetscInt       ct=0,max=0;
8634a15367fSSatish Balay #endif
864fef45726SSatish Balay 
865d64ed03dSBarry Smith   PetscFunctionBegin;
866b24ad042SBarry Smith   baij->ht_size=(PetscInt)(factor*nz);
8670bdbc534SSatish Balay   size = baij->ht_size;
868fef45726SSatish Balay 
8690bdbc534SSatish Balay   if (baij->ht) {
8700bdbc534SSatish Balay     PetscFunctionReturn(0);
871596b8d2eSBarry Smith   }
8720bdbc534SSatish Balay 
873fef45726SSatish Balay   /* Allocate Memory for Hash Table */
874b24ad042SBarry Smith   ierr     = PetscMalloc((size)*(sizeof(PetscInt)+sizeof(MatScalar*))+1,&baij->hd);CHKERRQ(ierr);
875b24ad042SBarry Smith   baij->ht = (PetscInt*)(baij->hd + size);
876b9e4cc15SSatish Balay   HD       = baij->hd;
877a07cd24cSSatish Balay   HT       = baij->ht;
878b9e4cc15SSatish Balay 
879b9e4cc15SSatish Balay 
880b24ad042SBarry Smith   ierr = PetscMemzero(HD,size*(sizeof(PetscInt)+sizeof(PetscScalar*)));CHKERRQ(ierr);
8810bdbc534SSatish Balay 
882596b8d2eSBarry Smith 
883596b8d2eSBarry Smith   /* Loop Over A */
8840bdbc534SSatish Balay   for (i=0; i<a->mbs; i++) {
885596b8d2eSBarry Smith     for (j=ai[i]; j<ai[i+1]; j++) {
8860bdbc534SSatish Balay       row = i+rstart;
8870bdbc534SSatish Balay       col = aj[j]+cstart;
888596b8d2eSBarry Smith 
889187ce0cbSSatish Balay       key = row*Nbs + col + 1;
890c2760754SSatish Balay       h1  = HASH(size,key,tmp);
8910bdbc534SSatish Balay       for (k=0; k<size; k++){
892958c9bccSBarry Smith         if (!HT[(h1+k)%size]) {
8930bdbc534SSatish Balay           HT[(h1+k)%size] = key;
8940bdbc534SSatish Balay           HD[(h1+k)%size] = a->a + j*bs2;
895596b8d2eSBarry Smith           break;
8966cf91177SBarry Smith #if defined(PETSC_USE_INFO)
897187ce0cbSSatish Balay         } else {
898187ce0cbSSatish Balay           ct++;
899187ce0cbSSatish Balay #endif
900596b8d2eSBarry Smith         }
901187ce0cbSSatish Balay       }
9026cf91177SBarry Smith #if defined(PETSC_USE_INFO)
903187ce0cbSSatish Balay       if (k> max) max = k;
904187ce0cbSSatish Balay #endif
905596b8d2eSBarry Smith     }
906596b8d2eSBarry Smith   }
907596b8d2eSBarry Smith   /* Loop Over B */
9080bdbc534SSatish Balay   for (i=0; i<b->mbs; i++) {
909596b8d2eSBarry Smith     for (j=bi[i]; j<bi[i+1]; j++) {
9100bdbc534SSatish Balay       row = i+rstart;
9110bdbc534SSatish Balay       col = garray[bj[j]];
912187ce0cbSSatish Balay       key = row*Nbs + col + 1;
913c2760754SSatish Balay       h1  = HASH(size,key,tmp);
9140bdbc534SSatish Balay       for (k=0; k<size; k++){
915958c9bccSBarry Smith         if (!HT[(h1+k)%size]) {
9160bdbc534SSatish Balay           HT[(h1+k)%size] = key;
9170bdbc534SSatish Balay           HD[(h1+k)%size] = b->a + j*bs2;
918596b8d2eSBarry Smith           break;
9196cf91177SBarry Smith #if defined(PETSC_USE_INFO)
920187ce0cbSSatish Balay         } else {
921187ce0cbSSatish Balay           ct++;
922187ce0cbSSatish Balay #endif
923596b8d2eSBarry Smith         }
924187ce0cbSSatish Balay       }
9256cf91177SBarry Smith #if defined(PETSC_USE_INFO)
926187ce0cbSSatish Balay       if (k> max) max = k;
927187ce0cbSSatish Balay #endif
928596b8d2eSBarry Smith     }
929596b8d2eSBarry Smith   }
930596b8d2eSBarry Smith 
931596b8d2eSBarry Smith   /* Print Summary */
9326cf91177SBarry Smith #if defined(PETSC_USE_INFO)
933c38d4ed2SBarry Smith   for (i=0,j=0; i<size; i++) {
934596b8d2eSBarry Smith     if (HT[i]) {j++;}
935c38d4ed2SBarry Smith   }
936ae15b995SBarry Smith   ierr = PetscInfo2(0,"Average Search = %5.2f,max search = %D\n",(!j)? 0.0:((PetscReal)(ct+j))/j,max);CHKERRQ(ierr);
937187ce0cbSSatish Balay #endif
9383a40ed3dSBarry Smith   PetscFunctionReturn(0);
939596b8d2eSBarry Smith }
94057b952d6SSatish Balay 
9414a2ae208SSatish Balay #undef __FUNCT__
9424a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyBegin_MPIBAIJ"
943dfbe8321SBarry Smith PetscErrorCode MatAssemblyBegin_MPIBAIJ(Mat mat,MatAssemblyType mode)
944bbb85fb3SSatish Balay {
945bbb85fb3SSatish Balay   Mat_MPIBAIJ    *baij = (Mat_MPIBAIJ*)mat->data;
946dfbe8321SBarry Smith   PetscErrorCode ierr;
947b24ad042SBarry Smith   PetscInt       nstash,reallocs;
948bbb85fb3SSatish Balay   InsertMode     addv;
949bbb85fb3SSatish Balay 
950bbb85fb3SSatish Balay   PetscFunctionBegin;
951bbb85fb3SSatish Balay   if (baij->donotstash) {
952bbb85fb3SSatish Balay     PetscFunctionReturn(0);
953bbb85fb3SSatish Balay   }
954bbb85fb3SSatish Balay 
955bbb85fb3SSatish Balay   /* make sure all processors are either in INSERTMODE or ADDMODE */
956bbb85fb3SSatish Balay   ierr = MPI_Allreduce(&mat->insertmode,&addv,1,MPI_INT,MPI_BOR,mat->comm);CHKERRQ(ierr);
957bbb85fb3SSatish Balay   if (addv == (ADD_VALUES|INSERT_VALUES)) {
95829bbc08cSBarry Smith     SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Some processors inserted others added");
959bbb85fb3SSatish Balay   }
960bbb85fb3SSatish Balay   mat->insertmode = addv; /* in case this processor had no cache */
961bbb85fb3SSatish Balay 
962899cda47SBarry Smith   ierr = MatStashScatterBegin_Private(&mat->stash,mat->rmap.range);CHKERRQ(ierr);
963899cda47SBarry Smith   ierr = MatStashScatterBegin_Private(&mat->bstash,baij->rangebs);CHKERRQ(ierr);
9648798bf22SSatish Balay   ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr);
965ae15b995SBarry Smith   ierr = PetscInfo2(0,"Stash has %D entries,uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr);
96646680499SSatish Balay   ierr = MatStashGetInfo_Private(&mat->bstash,&nstash,&reallocs);CHKERRQ(ierr);
967ae15b995SBarry Smith   ierr = PetscInfo2(0,"Block-Stash has %D entries, uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr);
968bbb85fb3SSatish Balay   PetscFunctionReturn(0);
969bbb85fb3SSatish Balay }
970bbb85fb3SSatish Balay 
9714a2ae208SSatish Balay #undef __FUNCT__
9724a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyEnd_MPIBAIJ"
973dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_MPIBAIJ(Mat mat,MatAssemblyType mode)
974bbb85fb3SSatish Balay {
975bbb85fb3SSatish Balay   Mat_MPIBAIJ    *baij=(Mat_MPIBAIJ*)mat->data;
97691c97fd4SSatish Balay   Mat_SeqBAIJ    *a=(Mat_SeqBAIJ*)baij->A->data;
9776849ba73SBarry Smith   PetscErrorCode ierr;
978b24ad042SBarry Smith   PetscInt       i,j,rstart,ncols,flg,bs2=baij->bs2;
979b24ad042SBarry Smith   PetscInt       *row,*col,other_disassembled;
9807c922b88SBarry Smith   PetscTruth     r1,r2,r3;
9813eda8832SBarry Smith   MatScalar      *val;
982bbb85fb3SSatish Balay   InsertMode     addv = mat->insertmode;
983b24ad042SBarry Smith   PetscMPIInt    n;
984bbb85fb3SSatish Balay 
98591c97fd4SSatish Balay   /* do not use 'b=(Mat_SeqBAIJ*)baij->B->data' as B can be reset in disassembly */
986bbb85fb3SSatish Balay   PetscFunctionBegin;
987bbb85fb3SSatish Balay   if (!baij->donotstash) {
988a2d1c673SSatish Balay     while (1) {
9898798bf22SSatish Balay       ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr);
990a2d1c673SSatish Balay       if (!flg) break;
991a2d1c673SSatish Balay 
992bbb85fb3SSatish Balay       for (i=0; i<n;) {
993bbb85fb3SSatish Balay         /* Now identify the consecutive vals belonging to the same row */
994bbb85fb3SSatish Balay         for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; }
995bbb85fb3SSatish Balay         if (j < n) ncols = j-i;
996bbb85fb3SSatish Balay         else       ncols = n-i;
997bbb85fb3SSatish Balay         /* Now assemble all these values with a single function call */
99893fea6afSBarry Smith         ierr = MatSetValues_MPIBAIJ_MatScalar(mat,1,row+i,ncols,col+i,val+i,addv);CHKERRQ(ierr);
999bbb85fb3SSatish Balay         i = j;
1000bbb85fb3SSatish Balay       }
1001bbb85fb3SSatish Balay     }
10028798bf22SSatish Balay     ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr);
1003a2d1c673SSatish Balay     /* Now process the block-stash. Since the values are stashed column-oriented,
1004a2d1c673SSatish Balay        set the roworiented flag to column oriented, and after MatSetValues()
1005a2d1c673SSatish Balay        restore the original flags */
1006a2d1c673SSatish Balay     r1 = baij->roworiented;
1007a2d1c673SSatish Balay     r2 = a->roworiented;
100891c97fd4SSatish Balay     r3 = ((Mat_SeqBAIJ*)baij->B->data)->roworiented;
10097c922b88SBarry Smith     baij->roworiented = PETSC_FALSE;
10107c922b88SBarry Smith     a->roworiented    = PETSC_FALSE;
101191c97fd4SSatish Balay     (((Mat_SeqBAIJ*)baij->B->data))->roworiented    = PETSC_FALSE; /* b->roworiented */
1012a2d1c673SSatish Balay     while (1) {
10138798bf22SSatish Balay       ierr = MatStashScatterGetMesg_Private(&mat->bstash,&n,&row,&col,&val,&flg);CHKERRQ(ierr);
1014a2d1c673SSatish Balay       if (!flg) break;
1015a2d1c673SSatish Balay 
1016a2d1c673SSatish Balay       for (i=0; i<n;) {
1017a2d1c673SSatish Balay         /* Now identify the consecutive vals belonging to the same row */
1018a2d1c673SSatish Balay         for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; }
1019a2d1c673SSatish Balay         if (j < n) ncols = j-i;
1020a2d1c673SSatish Balay         else       ncols = n-i;
102193fea6afSBarry Smith         ierr = MatSetValuesBlocked_MPIBAIJ_MatScalar(mat,1,row+i,ncols,col+i,val+i*bs2,addv);CHKERRQ(ierr);
1022a2d1c673SSatish Balay         i = j;
1023a2d1c673SSatish Balay       }
1024a2d1c673SSatish Balay     }
10258798bf22SSatish Balay     ierr = MatStashScatterEnd_Private(&mat->bstash);CHKERRQ(ierr);
1026a2d1c673SSatish Balay     baij->roworiented = r1;
1027a2d1c673SSatish Balay     a->roworiented    = r2;
102891c97fd4SSatish Balay     ((Mat_SeqBAIJ*)baij->B->data)->roworiented    = r3; /* b->roworiented */
1029bbb85fb3SSatish Balay   }
1030bbb85fb3SSatish Balay 
1031bbb85fb3SSatish Balay   ierr = MatAssemblyBegin(baij->A,mode);CHKERRQ(ierr);
1032bbb85fb3SSatish Balay   ierr = MatAssemblyEnd(baij->A,mode);CHKERRQ(ierr);
1033bbb85fb3SSatish Balay 
1034bbb85fb3SSatish Balay   /* determine if any processor has disassembled, if so we must
1035bbb85fb3SSatish Balay      also disassemble ourselfs, in order that we may reassemble. */
1036bbb85fb3SSatish Balay   /*
1037bbb85fb3SSatish Balay      if nonzero structure of submatrix B cannot change then we know that
1038bbb85fb3SSatish Balay      no processor disassembled thus we can skip this stuff
1039bbb85fb3SSatish Balay   */
1040bbb85fb3SSatish Balay   if (!((Mat_SeqBAIJ*)baij->B->data)->nonew)  {
1041bbb85fb3SSatish Balay     ierr = MPI_Allreduce(&mat->was_assembled,&other_disassembled,1,MPI_INT,MPI_PROD,mat->comm);CHKERRQ(ierr);
1042bbb85fb3SSatish Balay     if (mat->was_assembled && !other_disassembled) {
1043bbb85fb3SSatish Balay       ierr = DisAssemble_MPIBAIJ(mat);CHKERRQ(ierr);
1044bbb85fb3SSatish Balay     }
1045bbb85fb3SSatish Balay   }
1046bbb85fb3SSatish Balay 
1047bbb85fb3SSatish Balay   if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) {
1048bbb85fb3SSatish Balay     ierr = MatSetUpMultiply_MPIBAIJ(mat);CHKERRQ(ierr);
1049bbb85fb3SSatish Balay   }
105091c97fd4SSatish Balay   ((Mat_SeqBAIJ*)baij->B->data)->compressedrow.use = PETSC_TRUE; /* b->compressedrow.use */
1051bbb85fb3SSatish Balay   ierr = MatAssemblyBegin(baij->B,mode);CHKERRQ(ierr);
1052bbb85fb3SSatish Balay   ierr = MatAssemblyEnd(baij->B,mode);CHKERRQ(ierr);
1053bbb85fb3SSatish Balay 
10546cf91177SBarry Smith #if defined(PETSC_USE_INFO)
1055bbb85fb3SSatish Balay   if (baij->ht && mode== MAT_FINAL_ASSEMBLY) {
1056ae15b995SBarry Smith     ierr = PetscInfo1(0,"Average Hash Table Search in MatSetValues = %5.2f\n",((PetscReal)baij->ht_total_ct)/baij->ht_insert_ct);CHKERRQ(ierr);
1057bbb85fb3SSatish Balay     baij->ht_total_ct  = 0;
1058bbb85fb3SSatish Balay     baij->ht_insert_ct = 0;
1059bbb85fb3SSatish Balay   }
1060bbb85fb3SSatish Balay #endif
1061bbb85fb3SSatish Balay   if (baij->ht_flag && !baij->ht && mode == MAT_FINAL_ASSEMBLY) {
1062bbb85fb3SSatish Balay     ierr = MatCreateHashTable_MPIBAIJ_Private(mat,baij->ht_fact);CHKERRQ(ierr);
1063bbb85fb3SSatish Balay     mat->ops->setvalues        = MatSetValues_MPIBAIJ_HT;
1064bbb85fb3SSatish Balay     mat->ops->setvaluesblocked = MatSetValuesBlocked_MPIBAIJ_HT;
1065bbb85fb3SSatish Balay   }
1066bbb85fb3SSatish Balay 
1067606d414cSSatish Balay   ierr = PetscFree(baij->rowvalues);CHKERRQ(ierr);
1068606d414cSSatish Balay   baij->rowvalues = 0;
1069bbb85fb3SSatish Balay   PetscFunctionReturn(0);
1070bbb85fb3SSatish Balay }
107157b952d6SSatish Balay 
10724a2ae208SSatish Balay #undef __FUNCT__
10734a2ae208SSatish Balay #define __FUNCT__ "MatView_MPIBAIJ_ASCIIorDraworSocket"
10746849ba73SBarry Smith static PetscErrorCode MatView_MPIBAIJ_ASCIIorDraworSocket(Mat mat,PetscViewer viewer)
107557b952d6SSatish Balay {
107657b952d6SSatish Balay   Mat_MPIBAIJ       *baij = (Mat_MPIBAIJ*)mat->data;
1077dfbe8321SBarry Smith   PetscErrorCode    ierr;
1078b24ad042SBarry Smith   PetscMPIInt       size = baij->size,rank = baij->rank;
1079899cda47SBarry Smith   PetscInt          bs = mat->rmap.bs;
108032077d6dSBarry Smith   PetscTruth        iascii,isdraw;
1081b0a32e0cSBarry Smith   PetscViewer       sviewer;
1082f3ef73ceSBarry Smith   PetscViewerFormat format;
108357b952d6SSatish Balay 
1084d64ed03dSBarry Smith   PetscFunctionBegin;
108532077d6dSBarry Smith   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&iascii);CHKERRQ(ierr);
1086fb9695e5SSatish Balay   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr);
108732077d6dSBarry Smith   if (iascii) {
1088b0a32e0cSBarry Smith     ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr);
1089456192e2SBarry Smith     if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) {
10904e220ebcSLois Curfman McInnes       MatInfo info;
1091d132466eSBarry Smith       ierr = MPI_Comm_rank(mat->comm,&rank);CHKERRQ(ierr);
1092d41123aaSBarry Smith       ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr);
109377431f27SBarry Smith       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Local rows %D nz %D nz alloced %D bs %D mem %D\n",
1094899cda47SBarry Smith               rank,mat->rmap.N,(PetscInt)info.nz_used*bs,(PetscInt)info.nz_allocated*bs,
1095899cda47SBarry Smith               mat->rmap.bs,(PetscInt)info.memory);CHKERRQ(ierr);
1096d132466eSBarry Smith       ierr = MatGetInfo(baij->A,MAT_LOCAL,&info);CHKERRQ(ierr);
109777431f27SBarry Smith       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] on-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used*bs);CHKERRQ(ierr);
1098d132466eSBarry Smith       ierr = MatGetInfo(baij->B,MAT_LOCAL,&info);CHKERRQ(ierr);
109977431f27SBarry Smith       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] off-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used*bs);CHKERRQ(ierr);
1100b0a32e0cSBarry Smith       ierr = PetscViewerFlush(viewer);CHKERRQ(ierr);
110157b952d6SSatish Balay       ierr = VecScatterView(baij->Mvctx,viewer);CHKERRQ(ierr);
11023a40ed3dSBarry Smith       PetscFunctionReturn(0);
1103fb9695e5SSatish Balay     } else if (format == PETSC_VIEWER_ASCII_INFO) {
110477431f27SBarry Smith       ierr = PetscViewerASCIIPrintf(viewer,"  block size is %D\n",bs);CHKERRQ(ierr);
11053a40ed3dSBarry Smith       PetscFunctionReturn(0);
110604929863SHong Zhang     } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) {
110704929863SHong Zhang       PetscFunctionReturn(0);
110857b952d6SSatish Balay     }
110957b952d6SSatish Balay   }
111057b952d6SSatish Balay 
11110f5bd95cSBarry Smith   if (isdraw) {
1112b0a32e0cSBarry Smith     PetscDraw       draw;
111357b952d6SSatish Balay     PetscTruth isnull;
1114b0a32e0cSBarry Smith     ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr);
1115b0a32e0cSBarry Smith     ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); if (isnull) PetscFunctionReturn(0);
111657b952d6SSatish Balay   }
111757b952d6SSatish Balay 
111857b952d6SSatish Balay   if (size == 1) {
1119873048abSBarry Smith     ierr = PetscObjectSetName((PetscObject)baij->A,mat->name);CHKERRQ(ierr);
112057b952d6SSatish Balay     ierr = MatView(baij->A,viewer);CHKERRQ(ierr);
1121d64ed03dSBarry Smith   } else {
112257b952d6SSatish Balay     /* assemble the entire matrix onto first processor. */
112357b952d6SSatish Balay     Mat         A;
112457b952d6SSatish Balay     Mat_SeqBAIJ *Aloc;
1125899cda47SBarry Smith     PetscInt    M = mat->rmap.N,N = mat->cmap.N,*ai,*aj,col,i,j,k,*rvals,mbs = baij->mbs;
11263eda8832SBarry Smith     MatScalar   *a;
112757b952d6SSatish Balay 
1128f204ca49SKris Buschelman     /* Here we are creating a temporary matrix, so will assume MPIBAIJ is acceptable */
1129f204ca49SKris Buschelman     /* Perhaps this should be the type of mat? */
1130f69a0ea3SMatthew Knepley     ierr = MatCreate(mat->comm,&A);CHKERRQ(ierr);
113157b952d6SSatish Balay     if (!rank) {
1132f69a0ea3SMatthew Knepley       ierr = MatSetSizes(A,M,N,M,N);CHKERRQ(ierr);
1133d64ed03dSBarry Smith     } else {
1134f69a0ea3SMatthew Knepley       ierr = MatSetSizes(A,0,0,M,N);CHKERRQ(ierr);
113557b952d6SSatish Balay     }
1136f204ca49SKris Buschelman     ierr = MatSetType(A,MATMPIBAIJ);CHKERRQ(ierr);
1137899cda47SBarry Smith     ierr = MatMPIBAIJSetPreallocation(A,mat->rmap.bs,0,PETSC_NULL,0,PETSC_NULL);CHKERRQ(ierr);
113852e6d16bSBarry Smith     ierr = PetscLogObjectParent(mat,A);CHKERRQ(ierr);
113957b952d6SSatish Balay 
114057b952d6SSatish Balay     /* copy over the A part */
114157b952d6SSatish Balay     Aloc = (Mat_SeqBAIJ*)baij->A->data;
114257b952d6SSatish Balay     ai   = Aloc->i; aj = Aloc->j; a = Aloc->a;
1143b24ad042SBarry Smith     ierr = PetscMalloc(bs*sizeof(PetscInt),&rvals);CHKERRQ(ierr);
114457b952d6SSatish Balay 
114557b952d6SSatish Balay     for (i=0; i<mbs; i++) {
1146899cda47SBarry Smith       rvals[0] = bs*(baij->rstartbs + i);
114757b952d6SSatish Balay       for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; }
114857b952d6SSatish Balay       for (j=ai[i]; j<ai[i+1]; j++) {
1149899cda47SBarry Smith         col = (baij->cstartbs+aj[j])*bs;
115057b952d6SSatish Balay         for (k=0; k<bs; k++) {
115193fea6afSBarry Smith           ierr = MatSetValues_MPIBAIJ_MatScalar(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr);
1152cee3aa6bSSatish Balay           col++; a += bs;
115357b952d6SSatish Balay         }
115457b952d6SSatish Balay       }
115557b952d6SSatish Balay     }
115657b952d6SSatish Balay     /* copy over the B part */
115757b952d6SSatish Balay     Aloc = (Mat_SeqBAIJ*)baij->B->data;
115857b952d6SSatish Balay     ai = Aloc->i; aj = Aloc->j; a = Aloc->a;
115957b952d6SSatish Balay     for (i=0; i<mbs; i++) {
1160899cda47SBarry Smith       rvals[0] = bs*(baij->rstartbs + i);
116157b952d6SSatish Balay       for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; }
116257b952d6SSatish Balay       for (j=ai[i]; j<ai[i+1]; j++) {
116357b952d6SSatish Balay         col = baij->garray[aj[j]]*bs;
116457b952d6SSatish Balay         for (k=0; k<bs; k++) {
116593fea6afSBarry Smith           ierr = MatSetValues_MPIBAIJ_MatScalar(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr);
1166cee3aa6bSSatish Balay           col++; a += bs;
116757b952d6SSatish Balay         }
116857b952d6SSatish Balay       }
116957b952d6SSatish Balay     }
1170606d414cSSatish Balay     ierr = PetscFree(rvals);CHKERRQ(ierr);
11716d4a8577SBarry Smith     ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
11726d4a8577SBarry Smith     ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
117355843e3eSBarry Smith     /*
117455843e3eSBarry Smith        Everyone has to call to draw the matrix since the graphics waits are
1175b0a32e0cSBarry Smith        synchronized across all processors that share the PetscDraw object
117655843e3eSBarry Smith     */
1177b0a32e0cSBarry Smith     ierr = PetscViewerGetSingleton(viewer,&sviewer);CHKERRQ(ierr);
1178f14a1c24SBarry Smith     if (!rank) {
1179e36acaf3SBarry Smith       ierr = PetscObjectSetName((PetscObject)((Mat_MPIBAIJ*)(A->data))->A,mat->name);CHKERRQ(ierr);
11806831982aSBarry Smith       ierr = MatView(((Mat_MPIBAIJ*)(A->data))->A,sviewer);CHKERRQ(ierr);
118157b952d6SSatish Balay     }
1182b0a32e0cSBarry Smith     ierr = PetscViewerRestoreSingleton(viewer,&sviewer);CHKERRQ(ierr);
118357b952d6SSatish Balay     ierr = MatDestroy(A);CHKERRQ(ierr);
118457b952d6SSatish Balay   }
11853a40ed3dSBarry Smith   PetscFunctionReturn(0);
118657b952d6SSatish Balay }
118757b952d6SSatish Balay 
11884a2ae208SSatish Balay #undef __FUNCT__
11894a2ae208SSatish Balay #define __FUNCT__ "MatView_MPIBAIJ"
1190dfbe8321SBarry Smith PetscErrorCode MatView_MPIBAIJ(Mat mat,PetscViewer viewer)
119157b952d6SSatish Balay {
1192dfbe8321SBarry Smith   PetscErrorCode ierr;
119332077d6dSBarry Smith   PetscTruth     iascii,isdraw,issocket,isbinary;
119457b952d6SSatish Balay 
1195d64ed03dSBarry Smith   PetscFunctionBegin;
119632077d6dSBarry Smith   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&iascii);CHKERRQ(ierr);
1197fb9695e5SSatish Balay   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr);
1198b0a32e0cSBarry Smith   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_SOCKET,&issocket);CHKERRQ(ierr);
1199fb9695e5SSatish Balay   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_BINARY,&isbinary);CHKERRQ(ierr);
120032077d6dSBarry Smith   if (iascii || isdraw || issocket || isbinary) {
12017b2a1423SBarry Smith     ierr = MatView_MPIBAIJ_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr);
12025cd90555SBarry Smith   } else {
120379a5c55eSBarry Smith     SETERRQ1(PETSC_ERR_SUP,"Viewer type %s not supported by MPIBAIJ matrices",((PetscObject)viewer)->type_name);
120457b952d6SSatish Balay   }
12053a40ed3dSBarry Smith   PetscFunctionReturn(0);
120657b952d6SSatish Balay }
120757b952d6SSatish Balay 
12084a2ae208SSatish Balay #undef __FUNCT__
12094a2ae208SSatish Balay #define __FUNCT__ "MatDestroy_MPIBAIJ"
1210dfbe8321SBarry Smith PetscErrorCode MatDestroy_MPIBAIJ(Mat mat)
121179bdfe76SSatish Balay {
121279bdfe76SSatish Balay   Mat_MPIBAIJ    *baij = (Mat_MPIBAIJ*)mat->data;
1213dfbe8321SBarry Smith   PetscErrorCode ierr;
121479bdfe76SSatish Balay 
1215d64ed03dSBarry Smith   PetscFunctionBegin;
1216aa482453SBarry Smith #if defined(PETSC_USE_LOG)
1217899cda47SBarry Smith   PetscLogObjectState((PetscObject)mat,"Rows=%D,Cols=%D",mat->rmap.N,mat->cmap.N);
121879bdfe76SSatish Balay #endif
12198798bf22SSatish Balay   ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr);
12208798bf22SSatish Balay   ierr = MatStashDestroy_Private(&mat->bstash);CHKERRQ(ierr);
122179bdfe76SSatish Balay   ierr = MatDestroy(baij->A);CHKERRQ(ierr);
122279bdfe76SSatish Balay   ierr = MatDestroy(baij->B);CHKERRQ(ierr);
1223aa482453SBarry Smith #if defined (PETSC_USE_CTABLE)
12240f5bd95cSBarry Smith   if (baij->colmap) {ierr = PetscTableDelete(baij->colmap);CHKERRQ(ierr);}
122548e59246SSatish Balay #else
122605b42c5fSBarry Smith   ierr = PetscFree(baij->colmap);CHKERRQ(ierr);
122748e59246SSatish Balay #endif
122805b42c5fSBarry Smith   ierr = PetscFree(baij->garray);CHKERRQ(ierr);
1229606d414cSSatish Balay   if (baij->lvec)   {ierr = VecDestroy(baij->lvec);CHKERRQ(ierr);}
1230606d414cSSatish Balay   if (baij->Mvctx)  {ierr = VecScatterDestroy(baij->Mvctx);CHKERRQ(ierr);}
123105b42c5fSBarry Smith   ierr = PetscFree(baij->rowvalues);CHKERRQ(ierr);
123205b42c5fSBarry Smith   ierr = PetscFree(baij->barray);CHKERRQ(ierr);
123305b42c5fSBarry Smith   ierr = PetscFree(baij->hd);CHKERRQ(ierr);
12346fa18ffdSBarry Smith #if defined(PETSC_USE_MAT_SINGLE)
123505b42c5fSBarry Smith   ierr = PetscFree(baij->setvaluescopy);CHKERRQ(ierr);
12366fa18ffdSBarry Smith #endif
1237899cda47SBarry Smith   ierr = PetscFree(baij->rangebs);CHKERRQ(ierr);
1238606d414cSSatish Balay   ierr = PetscFree(baij);CHKERRQ(ierr);
1239901853e0SKris Buschelman 
1240901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatStoreValues_C","",PETSC_NULL);CHKERRQ(ierr);
1241901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatRetrieveValues_C","",PETSC_NULL);CHKERRQ(ierr);
1242901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatGetDiagonalBlock_C","",PETSC_NULL);CHKERRQ(ierr);
1243901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPIBAIJSetPreallocation_C","",PETSC_NULL);CHKERRQ(ierr);
1244aac34f13SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPIBAIJSetPreallocationCSR_C","",PETSC_NULL);CHKERRQ(ierr);
1245901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDiagonalScaleLocal_C","",PETSC_NULL);CHKERRQ(ierr);
1246901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatSetHashTableFactor_C","",PETSC_NULL);CHKERRQ(ierr);
12473a40ed3dSBarry Smith   PetscFunctionReturn(0);
124879bdfe76SSatish Balay }
124979bdfe76SSatish Balay 
12504a2ae208SSatish Balay #undef __FUNCT__
12514a2ae208SSatish Balay #define __FUNCT__ "MatMult_MPIBAIJ"
1252dfbe8321SBarry Smith PetscErrorCode MatMult_MPIBAIJ(Mat A,Vec xx,Vec yy)
1253cee3aa6bSSatish Balay {
1254cee3aa6bSSatish Balay   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)A->data;
1255dfbe8321SBarry Smith   PetscErrorCode ierr;
1256b24ad042SBarry Smith   PetscInt       nt;
1257cee3aa6bSSatish Balay 
1258d64ed03dSBarry Smith   PetscFunctionBegin;
1259e1311b90SBarry Smith   ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr);
1260899cda47SBarry Smith   if (nt != A->cmap.n) {
126129bbc08cSBarry Smith     SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx");
126247b4a8eaSLois Curfman McInnes   }
1263e1311b90SBarry Smith   ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr);
1264899cda47SBarry Smith   if (nt != A->rmap.n) {
126529bbc08cSBarry Smith     SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible parition of A and yy");
126647b4a8eaSLois Curfman McInnes   }
126743a90d84SBarry Smith   ierr = VecScatterBegin(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr);
1268f830108cSBarry Smith   ierr = (*a->A->ops->mult)(a->A,xx,yy);CHKERRQ(ierr);
126943a90d84SBarry Smith   ierr = VecScatterEnd(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr);
1270f830108cSBarry Smith   ierr = (*a->B->ops->multadd)(a->B,a->lvec,yy,yy);CHKERRQ(ierr);
12713a40ed3dSBarry Smith   PetscFunctionReturn(0);
1272cee3aa6bSSatish Balay }
1273cee3aa6bSSatish Balay 
12744a2ae208SSatish Balay #undef __FUNCT__
12754a2ae208SSatish Balay #define __FUNCT__ "MatMultAdd_MPIBAIJ"
1276dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPIBAIJ(Mat A,Vec xx,Vec yy,Vec zz)
1277cee3aa6bSSatish Balay {
1278cee3aa6bSSatish Balay   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)A->data;
1279dfbe8321SBarry Smith   PetscErrorCode ierr;
1280d64ed03dSBarry Smith 
1281d64ed03dSBarry Smith   PetscFunctionBegin;
128243a90d84SBarry Smith   ierr = VecScatterBegin(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr);
1283f830108cSBarry Smith   ierr = (*a->A->ops->multadd)(a->A,xx,yy,zz);CHKERRQ(ierr);
128443a90d84SBarry Smith   ierr = VecScatterEnd(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr);
1285f830108cSBarry Smith   ierr = (*a->B->ops->multadd)(a->B,a->lvec,zz,zz);CHKERRQ(ierr);
12863a40ed3dSBarry Smith   PetscFunctionReturn(0);
1287cee3aa6bSSatish Balay }
1288cee3aa6bSSatish Balay 
12894a2ae208SSatish Balay #undef __FUNCT__
12904a2ae208SSatish Balay #define __FUNCT__ "MatMultTranspose_MPIBAIJ"
1291dfbe8321SBarry Smith PetscErrorCode MatMultTranspose_MPIBAIJ(Mat A,Vec xx,Vec yy)
1292cee3aa6bSSatish Balay {
1293cee3aa6bSSatish Balay   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)A->data;
1294dfbe8321SBarry Smith   PetscErrorCode ierr;
1295a5ff213dSBarry Smith   PetscTruth     merged;
1296cee3aa6bSSatish Balay 
1297d64ed03dSBarry Smith   PetscFunctionBegin;
1298a5ff213dSBarry Smith   ierr = VecScatterGetMerged(a->Mvctx,&merged);CHKERRQ(ierr);
1299cee3aa6bSSatish Balay   /* do nondiagonal part */
13007c922b88SBarry Smith   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr);
1301a5ff213dSBarry Smith   if (!merged) {
1302cee3aa6bSSatish Balay     /* send it on its way */
1303537820f0SBarry Smith     ierr = VecScatterBegin(a->lvec,yy,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr);
1304cee3aa6bSSatish Balay     /* do local part */
13057c922b88SBarry Smith     ierr = (*a->A->ops->multtranspose)(a->A,xx,yy);CHKERRQ(ierr);
1306cee3aa6bSSatish Balay     /* receive remote parts: note this assumes the values are not actually */
1307a5ff213dSBarry Smith     /* inserted in yy until the next line */
1308639f9d9dSBarry Smith     ierr = VecScatterEnd(a->lvec,yy,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr);
1309a5ff213dSBarry Smith   } else {
1310a5ff213dSBarry Smith     /* do local part */
1311a5ff213dSBarry Smith     ierr = (*a->A->ops->multtranspose)(a->A,xx,yy);CHKERRQ(ierr);
1312a5ff213dSBarry Smith     /* send it on its way */
1313a5ff213dSBarry Smith     ierr = VecScatterBegin(a->lvec,yy,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr);
1314a5ff213dSBarry Smith     /* values actually were received in the Begin() but we need to call this nop */
1315a5ff213dSBarry Smith     ierr = VecScatterEnd(a->lvec,yy,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr);
1316a5ff213dSBarry Smith   }
13173a40ed3dSBarry Smith   PetscFunctionReturn(0);
1318cee3aa6bSSatish Balay }
1319cee3aa6bSSatish Balay 
13204a2ae208SSatish Balay #undef __FUNCT__
13214a2ae208SSatish Balay #define __FUNCT__ "MatMultTransposeAdd_MPIBAIJ"
1322dfbe8321SBarry Smith PetscErrorCode MatMultTransposeAdd_MPIBAIJ(Mat A,Vec xx,Vec yy,Vec zz)
1323cee3aa6bSSatish Balay {
1324cee3aa6bSSatish Balay   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)A->data;
1325dfbe8321SBarry Smith   PetscErrorCode ierr;
1326cee3aa6bSSatish Balay 
1327d64ed03dSBarry Smith   PetscFunctionBegin;
1328cee3aa6bSSatish Balay   /* do nondiagonal part */
13297c922b88SBarry Smith   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr);
1330cee3aa6bSSatish Balay   /* send it on its way */
1331537820f0SBarry Smith   ierr = VecScatterBegin(a->lvec,zz,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr);
1332cee3aa6bSSatish Balay   /* do local part */
13337c922b88SBarry Smith   ierr = (*a->A->ops->multtransposeadd)(a->A,xx,yy,zz);CHKERRQ(ierr);
1334cee3aa6bSSatish Balay   /* receive remote parts: note this assumes the values are not actually */
1335cee3aa6bSSatish Balay   /* inserted in yy until the next line, which is true for my implementation*/
1336cee3aa6bSSatish Balay   /* but is not perhaps always true. */
1337537820f0SBarry Smith   ierr = VecScatterEnd(a->lvec,zz,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr);
13383a40ed3dSBarry Smith   PetscFunctionReturn(0);
1339cee3aa6bSSatish Balay }
1340cee3aa6bSSatish Balay 
1341cee3aa6bSSatish Balay /*
1342cee3aa6bSSatish Balay   This only works correctly for square matrices where the subblock A->A is the
1343cee3aa6bSSatish Balay    diagonal block
1344cee3aa6bSSatish Balay */
13454a2ae208SSatish Balay #undef __FUNCT__
13464a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonal_MPIBAIJ"
1347dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_MPIBAIJ(Mat A,Vec v)
1348cee3aa6bSSatish Balay {
1349cee3aa6bSSatish Balay   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)A->data;
1350dfbe8321SBarry Smith   PetscErrorCode ierr;
1351d64ed03dSBarry Smith 
1352d64ed03dSBarry Smith   PetscFunctionBegin;
1353899cda47SBarry Smith   if (A->rmap.N != A->cmap.N) SETERRQ(PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block");
13543a40ed3dSBarry Smith   ierr = MatGetDiagonal(a->A,v);CHKERRQ(ierr);
13553a40ed3dSBarry Smith   PetscFunctionReturn(0);
1356cee3aa6bSSatish Balay }
1357cee3aa6bSSatish Balay 
13584a2ae208SSatish Balay #undef __FUNCT__
13594a2ae208SSatish Balay #define __FUNCT__ "MatScale_MPIBAIJ"
1360f4df32b1SMatthew Knepley PetscErrorCode MatScale_MPIBAIJ(Mat A,PetscScalar aa)
1361cee3aa6bSSatish Balay {
1362cee3aa6bSSatish Balay   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)A->data;
1363dfbe8321SBarry Smith   PetscErrorCode ierr;
1364d64ed03dSBarry Smith 
1365d64ed03dSBarry Smith   PetscFunctionBegin;
1366f4df32b1SMatthew Knepley   ierr = MatScale(a->A,aa);CHKERRQ(ierr);
1367f4df32b1SMatthew Knepley   ierr = MatScale(a->B,aa);CHKERRQ(ierr);
13683a40ed3dSBarry Smith   PetscFunctionReturn(0);
1369cee3aa6bSSatish Balay }
1370026e39d0SSatish Balay 
13714a2ae208SSatish Balay #undef __FUNCT__
13724a2ae208SSatish Balay #define __FUNCT__ "MatGetRow_MPIBAIJ"
1373b24ad042SBarry Smith PetscErrorCode MatGetRow_MPIBAIJ(Mat matin,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v)
1374acdf5bf4SSatish Balay {
1375acdf5bf4SSatish Balay   Mat_MPIBAIJ    *mat = (Mat_MPIBAIJ*)matin->data;
137687828ca2SBarry Smith   PetscScalar    *vworkA,*vworkB,**pvA,**pvB,*v_p;
13776849ba73SBarry Smith   PetscErrorCode ierr;
1378899cda47SBarry Smith   PetscInt       bs = matin->rmap.bs,bs2 = mat->bs2,i,*cworkA,*cworkB,**pcA,**pcB;
1379899cda47SBarry Smith   PetscInt       nztot,nzA,nzB,lrow,brstart = matin->rmap.rstart,brend = matin->rmap.rend;
1380899cda47SBarry Smith   PetscInt       *cmap,*idx_p,cstart = mat->cstartbs;
1381acdf5bf4SSatish Balay 
1382d64ed03dSBarry Smith   PetscFunctionBegin;
1383abc0a331SBarry Smith   if (mat->getrowactive) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Already active");
1384acdf5bf4SSatish Balay   mat->getrowactive = PETSC_TRUE;
1385acdf5bf4SSatish Balay 
1386acdf5bf4SSatish Balay   if (!mat->rowvalues && (idx || v)) {
1387acdf5bf4SSatish Balay     /*
1388acdf5bf4SSatish Balay         allocate enough space to hold information from the longest row.
1389acdf5bf4SSatish Balay     */
1390acdf5bf4SSatish Balay     Mat_SeqBAIJ *Aa = (Mat_SeqBAIJ*)mat->A->data,*Ba = (Mat_SeqBAIJ*)mat->B->data;
1391b24ad042SBarry Smith     PetscInt     max = 1,mbs = mat->mbs,tmp;
1392bd16c2feSSatish Balay     for (i=0; i<mbs; i++) {
1393acdf5bf4SSatish Balay       tmp = Aa->i[i+1] - Aa->i[i] + Ba->i[i+1] - Ba->i[i];
1394acdf5bf4SSatish Balay       if (max < tmp) { max = tmp; }
1395acdf5bf4SSatish Balay     }
1396b24ad042SBarry Smith     ierr = PetscMalloc(max*bs2*(sizeof(PetscInt)+sizeof(PetscScalar)),&mat->rowvalues);CHKERRQ(ierr);
1397b24ad042SBarry Smith     mat->rowindices = (PetscInt*)(mat->rowvalues + max*bs2);
1398acdf5bf4SSatish Balay   }
1399acdf5bf4SSatish Balay 
140029bbc08cSBarry Smith   if (row < brstart || row >= brend) SETERRQ(PETSC_ERR_SUP,"Only local rows")
1401d9d09a02SSatish Balay   lrow = row - brstart;
1402acdf5bf4SSatish Balay 
1403acdf5bf4SSatish Balay   pvA = &vworkA; pcA = &cworkA; pvB = &vworkB; pcB = &cworkB;
1404acdf5bf4SSatish Balay   if (!v)   {pvA = 0; pvB = 0;}
1405acdf5bf4SSatish Balay   if (!idx) {pcA = 0; if (!v) pcB = 0;}
1406f830108cSBarry Smith   ierr = (*mat->A->ops->getrow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr);
1407f830108cSBarry Smith   ierr = (*mat->B->ops->getrow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr);
1408acdf5bf4SSatish Balay   nztot = nzA + nzB;
1409acdf5bf4SSatish Balay 
1410acdf5bf4SSatish Balay   cmap  = mat->garray;
1411acdf5bf4SSatish Balay   if (v  || idx) {
1412acdf5bf4SSatish Balay     if (nztot) {
1413acdf5bf4SSatish Balay       /* Sort by increasing column numbers, assuming A and B already sorted */
1414b24ad042SBarry Smith       PetscInt imark = -1;
1415acdf5bf4SSatish Balay       if (v) {
1416acdf5bf4SSatish Balay         *v = v_p = mat->rowvalues;
1417acdf5bf4SSatish Balay         for (i=0; i<nzB; i++) {
1418d9d09a02SSatish Balay           if (cmap[cworkB[i]/bs] < cstart)   v_p[i] = vworkB[i];
1419acdf5bf4SSatish Balay           else break;
1420acdf5bf4SSatish Balay         }
1421acdf5bf4SSatish Balay         imark = i;
1422acdf5bf4SSatish Balay         for (i=0; i<nzA; i++)     v_p[imark+i] = vworkA[i];
1423acdf5bf4SSatish Balay         for (i=imark; i<nzB; i++) v_p[nzA+i]   = vworkB[i];
1424acdf5bf4SSatish Balay       }
1425acdf5bf4SSatish Balay       if (idx) {
1426acdf5bf4SSatish Balay         *idx = idx_p = mat->rowindices;
1427acdf5bf4SSatish Balay         if (imark > -1) {
1428acdf5bf4SSatish Balay           for (i=0; i<imark; i++) {
1429bd16c2feSSatish Balay             idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs;
1430acdf5bf4SSatish Balay           }
1431acdf5bf4SSatish Balay         } else {
1432acdf5bf4SSatish Balay           for (i=0; i<nzB; i++) {
1433d9d09a02SSatish Balay             if (cmap[cworkB[i]/bs] < cstart)
1434d9d09a02SSatish Balay               idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ;
1435acdf5bf4SSatish Balay             else break;
1436acdf5bf4SSatish Balay           }
1437acdf5bf4SSatish Balay           imark = i;
1438acdf5bf4SSatish Balay         }
1439d9d09a02SSatish Balay         for (i=0; i<nzA; i++)     idx_p[imark+i] = cstart*bs + cworkA[i];
1440d9d09a02SSatish Balay         for (i=imark; i<nzB; i++) idx_p[nzA+i]   = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ;
1441acdf5bf4SSatish Balay       }
1442d64ed03dSBarry Smith     } else {
1443d212a18eSSatish Balay       if (idx) *idx = 0;
1444d212a18eSSatish Balay       if (v)   *v   = 0;
1445d212a18eSSatish Balay     }
1446acdf5bf4SSatish Balay   }
1447acdf5bf4SSatish Balay   *nz = nztot;
1448f830108cSBarry Smith   ierr = (*mat->A->ops->restorerow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr);
1449f830108cSBarry Smith   ierr = (*mat->B->ops->restorerow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr);
14503a40ed3dSBarry Smith   PetscFunctionReturn(0);
1451acdf5bf4SSatish Balay }
1452acdf5bf4SSatish Balay 
14534a2ae208SSatish Balay #undef __FUNCT__
14544a2ae208SSatish Balay #define __FUNCT__ "MatRestoreRow_MPIBAIJ"
1455b24ad042SBarry Smith PetscErrorCode MatRestoreRow_MPIBAIJ(Mat mat,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v)
1456acdf5bf4SSatish Balay {
1457acdf5bf4SSatish Balay   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data;
1458d64ed03dSBarry Smith 
1459d64ed03dSBarry Smith   PetscFunctionBegin;
1460abc0a331SBarry Smith   if (!baij->getrowactive) {
146129bbc08cSBarry Smith     SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"MatGetRow not called");
1462acdf5bf4SSatish Balay   }
1463acdf5bf4SSatish Balay   baij->getrowactive = PETSC_FALSE;
14643a40ed3dSBarry Smith   PetscFunctionReturn(0);
1465acdf5bf4SSatish Balay }
1466acdf5bf4SSatish Balay 
14674a2ae208SSatish Balay #undef __FUNCT__
14684a2ae208SSatish Balay #define __FUNCT__ "MatZeroEntries_MPIBAIJ"
1469dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_MPIBAIJ(Mat A)
147058667388SSatish Balay {
147158667388SSatish Balay   Mat_MPIBAIJ    *l = (Mat_MPIBAIJ*)A->data;
1472dfbe8321SBarry Smith   PetscErrorCode ierr;
1473d64ed03dSBarry Smith 
1474d64ed03dSBarry Smith   PetscFunctionBegin;
147558667388SSatish Balay   ierr = MatZeroEntries(l->A);CHKERRQ(ierr);
147658667388SSatish Balay   ierr = MatZeroEntries(l->B);CHKERRQ(ierr);
14773a40ed3dSBarry Smith   PetscFunctionReturn(0);
147858667388SSatish Balay }
14790ac07820SSatish Balay 
14804a2ae208SSatish Balay #undef __FUNCT__
14814a2ae208SSatish Balay #define __FUNCT__ "MatGetInfo_MPIBAIJ"
1482dfbe8321SBarry Smith PetscErrorCode MatGetInfo_MPIBAIJ(Mat matin,MatInfoType flag,MatInfo *info)
14830ac07820SSatish Balay {
14844e220ebcSLois Curfman McInnes   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)matin->data;
14854e220ebcSLois Curfman McInnes   Mat            A = a->A,B = a->B;
1486dfbe8321SBarry Smith   PetscErrorCode ierr;
1487329f5518SBarry Smith   PetscReal      isend[5],irecv[5];
14880ac07820SSatish Balay 
1489d64ed03dSBarry Smith   PetscFunctionBegin;
1490899cda47SBarry Smith   info->block_size     = (PetscReal)matin->rmap.bs;
14914e220ebcSLois Curfman McInnes   ierr = MatGetInfo(A,MAT_LOCAL,info);CHKERRQ(ierr);
14920e4b21beSBarry Smith   isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded;
1493de87f314SBarry Smith   isend[3] = info->memory;  isend[4] = info->mallocs;
14944e220ebcSLois Curfman McInnes   ierr = MatGetInfo(B,MAT_LOCAL,info);CHKERRQ(ierr);
14950e4b21beSBarry Smith   isend[0] += info->nz_used; isend[1] += info->nz_allocated; isend[2] += info->nz_unneeded;
1496de87f314SBarry Smith   isend[3] += info->memory;  isend[4] += info->mallocs;
14970ac07820SSatish Balay   if (flag == MAT_LOCAL) {
14984e220ebcSLois Curfman McInnes     info->nz_used      = isend[0];
14994e220ebcSLois Curfman McInnes     info->nz_allocated = isend[1];
15004e220ebcSLois Curfman McInnes     info->nz_unneeded  = isend[2];
15014e220ebcSLois Curfman McInnes     info->memory       = isend[3];
15024e220ebcSLois Curfman McInnes     info->mallocs      = isend[4];
15030ac07820SSatish Balay   } else if (flag == MAT_GLOBAL_MAX) {
1504d7d1e502SBarry Smith     ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_MAX,matin->comm);CHKERRQ(ierr);
15054e220ebcSLois Curfman McInnes     info->nz_used      = irecv[0];
15064e220ebcSLois Curfman McInnes     info->nz_allocated = irecv[1];
15074e220ebcSLois Curfman McInnes     info->nz_unneeded  = irecv[2];
15084e220ebcSLois Curfman McInnes     info->memory       = irecv[3];
15094e220ebcSLois Curfman McInnes     info->mallocs      = irecv[4];
15100ac07820SSatish Balay   } else if (flag == MAT_GLOBAL_SUM) {
1511d7d1e502SBarry Smith     ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_SUM,matin->comm);CHKERRQ(ierr);
15124e220ebcSLois Curfman McInnes     info->nz_used      = irecv[0];
15134e220ebcSLois Curfman McInnes     info->nz_allocated = irecv[1];
15144e220ebcSLois Curfman McInnes     info->nz_unneeded  = irecv[2];
15154e220ebcSLois Curfman McInnes     info->memory       = irecv[3];
15164e220ebcSLois Curfman McInnes     info->mallocs      = irecv[4];
1517d41123aaSBarry Smith   } else {
151877431f27SBarry Smith     SETERRQ1(PETSC_ERR_ARG_WRONG,"Unknown MatInfoType argument %d",(int)flag);
15190ac07820SSatish Balay   }
1520899cda47SBarry Smith   info->rows_global       = (PetscReal)A->rmap.N;
1521899cda47SBarry Smith   info->columns_global    = (PetscReal)A->cmap.N;
1522899cda47SBarry Smith   info->rows_local        = (PetscReal)A->rmap.N;
1523899cda47SBarry Smith   info->columns_local     = (PetscReal)A->cmap.N;
15244e220ebcSLois Curfman McInnes   info->fill_ratio_given  = 0; /* no parallel LU/ILU/Cholesky */
15254e220ebcSLois Curfman McInnes   info->fill_ratio_needed = 0;
15264e220ebcSLois Curfman McInnes   info->factor_mallocs    = 0;
15273a40ed3dSBarry Smith   PetscFunctionReturn(0);
15280ac07820SSatish Balay }
15290ac07820SSatish Balay 
15304a2ae208SSatish Balay #undef __FUNCT__
15314a2ae208SSatish Balay #define __FUNCT__ "MatSetOption_MPIBAIJ"
1532dfbe8321SBarry Smith PetscErrorCode MatSetOption_MPIBAIJ(Mat A,MatOption op)
153358667388SSatish Balay {
153458667388SSatish Balay   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)A->data;
1535dfbe8321SBarry Smith   PetscErrorCode ierr;
153658667388SSatish Balay 
1537d64ed03dSBarry Smith   PetscFunctionBegin;
153812c028f9SKris Buschelman   switch (op) {
153912c028f9SKris Buschelman   case MAT_NO_NEW_NONZERO_LOCATIONS:
154012c028f9SKris Buschelman   case MAT_YES_NEW_NONZERO_LOCATIONS:
154112c028f9SKris Buschelman   case MAT_COLUMNS_UNSORTED:
154212c028f9SKris Buschelman   case MAT_COLUMNS_SORTED:
154312c028f9SKris Buschelman   case MAT_NEW_NONZERO_ALLOCATION_ERR:
154412c028f9SKris Buschelman   case MAT_KEEP_ZEROED_ROWS:
154512c028f9SKris Buschelman   case MAT_NEW_NONZERO_LOCATION_ERR:
154698305bb5SBarry Smith     ierr = MatSetOption(a->A,op);CHKERRQ(ierr);
154798305bb5SBarry Smith     ierr = MatSetOption(a->B,op);CHKERRQ(ierr);
154812c028f9SKris Buschelman     break;
154912c028f9SKris Buschelman   case MAT_ROW_ORIENTED:
15507c922b88SBarry Smith     a->roworiented = PETSC_TRUE;
155198305bb5SBarry Smith     ierr = MatSetOption(a->A,op);CHKERRQ(ierr);
155298305bb5SBarry Smith     ierr = MatSetOption(a->B,op);CHKERRQ(ierr);
155312c028f9SKris Buschelman     break;
155412c028f9SKris Buschelman   case MAT_ROWS_SORTED:
155512c028f9SKris Buschelman   case MAT_ROWS_UNSORTED:
155612c028f9SKris Buschelman   case MAT_YES_NEW_DIAGONALS:
1557ae15b995SBarry Smith     ierr = PetscInfo(A,"Option ignored\n");CHKERRQ(ierr);
155812c028f9SKris Buschelman     break;
155912c028f9SKris Buschelman   case MAT_COLUMN_ORIENTED:
15607c922b88SBarry Smith     a->roworiented = PETSC_FALSE;
156198305bb5SBarry Smith     ierr = MatSetOption(a->A,op);CHKERRQ(ierr);
156298305bb5SBarry Smith     ierr = MatSetOption(a->B,op);CHKERRQ(ierr);
156312c028f9SKris Buschelman     break;
156412c028f9SKris Buschelman   case MAT_IGNORE_OFF_PROC_ENTRIES:
15657c922b88SBarry Smith     a->donotstash = PETSC_TRUE;
156612c028f9SKris Buschelman     break;
156712c028f9SKris Buschelman   case MAT_NO_NEW_DIAGONALS:
156829bbc08cSBarry Smith     SETERRQ(PETSC_ERR_SUP,"MAT_NO_NEW_DIAGONALS");
156912c028f9SKris Buschelman   case MAT_USE_HASH_TABLE:
15707c922b88SBarry Smith     a->ht_flag = PETSC_TRUE;
157112c028f9SKris Buschelman     break;
157277e54ba9SKris Buschelman   case MAT_SYMMETRIC:
157377e54ba9SKris Buschelman   case MAT_STRUCTURALLY_SYMMETRIC:
15742188ac68SBarry Smith   case MAT_HERMITIAN:
15752188ac68SBarry Smith   case MAT_SYMMETRY_ETERNAL:
15762188ac68SBarry Smith     ierr = MatSetOption(a->A,op);CHKERRQ(ierr);
15772188ac68SBarry Smith     break;
15789a4540c5SBarry Smith   case MAT_NOT_SYMMETRIC:
15799a4540c5SBarry Smith   case MAT_NOT_STRUCTURALLY_SYMMETRIC:
15809a4540c5SBarry Smith   case MAT_NOT_HERMITIAN:
15819a4540c5SBarry Smith   case MAT_NOT_SYMMETRY_ETERNAL:
158277e54ba9SKris Buschelman     break;
158312c028f9SKris Buschelman   default:
1584ad86a440SBarry Smith     SETERRQ1(PETSC_ERR_SUP,"unknown option %d",op);
1585d64ed03dSBarry Smith   }
15863a40ed3dSBarry Smith   PetscFunctionReturn(0);
158758667388SSatish Balay }
158858667388SSatish Balay 
15894a2ae208SSatish Balay #undef __FUNCT__
15904a2ae208SSatish Balay #define __FUNCT__ "MatTranspose_MPIBAIJ("
1591dfbe8321SBarry Smith PetscErrorCode MatTranspose_MPIBAIJ(Mat A,Mat *matout)
15920ac07820SSatish Balay {
15930ac07820SSatish Balay   Mat_MPIBAIJ    *baij = (Mat_MPIBAIJ*)A->data;
15940ac07820SSatish Balay   Mat_SeqBAIJ    *Aloc;
15950ac07820SSatish Balay   Mat            B;
1596dfbe8321SBarry Smith   PetscErrorCode ierr;
1597899cda47SBarry Smith   PetscInt       M=A->rmap.N,N=A->cmap.N,*ai,*aj,i,*rvals,j,k,col;
1598899cda47SBarry Smith   PetscInt       bs=A->rmap.bs,mbs=baij->mbs;
15993eda8832SBarry Smith   MatScalar      *a;
16000ac07820SSatish Balay 
1601d64ed03dSBarry Smith   PetscFunctionBegin;
160229bbc08cSBarry Smith   if (!matout && M != N) SETERRQ(PETSC_ERR_ARG_SIZ,"Square matrix only for in-place");
1603f69a0ea3SMatthew Knepley   ierr = MatCreate(A->comm,&B);CHKERRQ(ierr);
1604899cda47SBarry Smith   ierr = MatSetSizes(B,A->cmap.n,A->rmap.n,N,M);CHKERRQ(ierr);
1605f204ca49SKris Buschelman   ierr = MatSetType(B,A->type_name);CHKERRQ(ierr);
1606899cda47SBarry Smith   ierr = MatMPIBAIJSetPreallocation(B,A->rmap.bs,0,PETSC_NULL,0,PETSC_NULL);CHKERRQ(ierr);
16070ac07820SSatish Balay 
16080ac07820SSatish Balay   /* copy over the A part */
16090ac07820SSatish Balay   Aloc = (Mat_SeqBAIJ*)baij->A->data;
16100ac07820SSatish Balay   ai   = Aloc->i; aj = Aloc->j; a = Aloc->a;
1611b24ad042SBarry Smith   ierr = PetscMalloc(bs*sizeof(PetscInt),&rvals);CHKERRQ(ierr);
16120ac07820SSatish Balay 
16130ac07820SSatish Balay   for (i=0; i<mbs; i++) {
1614899cda47SBarry Smith     rvals[0] = bs*(baij->rstartbs + i);
16150ac07820SSatish Balay     for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; }
16160ac07820SSatish Balay     for (j=ai[i]; j<ai[i+1]; j++) {
1617899cda47SBarry Smith       col = (baij->cstartbs+aj[j])*bs;
16180ac07820SSatish Balay       for (k=0; k<bs; k++) {
161993fea6afSBarry Smith         ierr = MatSetValues_MPIBAIJ_MatScalar(B,1,&col,bs,rvals,a,INSERT_VALUES);CHKERRQ(ierr);
16200ac07820SSatish Balay         col++; a += bs;
16210ac07820SSatish Balay       }
16220ac07820SSatish Balay     }
16230ac07820SSatish Balay   }
16240ac07820SSatish Balay   /* copy over the B part */
16250ac07820SSatish Balay   Aloc = (Mat_SeqBAIJ*)baij->B->data;
16260ac07820SSatish Balay   ai = Aloc->i; aj = Aloc->j; a = Aloc->a;
16270ac07820SSatish Balay   for (i=0; i<mbs; i++) {
1628899cda47SBarry Smith     rvals[0] = bs*(baij->rstartbs + i);
16290ac07820SSatish Balay     for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; }
16300ac07820SSatish Balay     for (j=ai[i]; j<ai[i+1]; j++) {
16310ac07820SSatish Balay       col = baij->garray[aj[j]]*bs;
16320ac07820SSatish Balay       for (k=0; k<bs; k++) {
163393fea6afSBarry Smith         ierr = MatSetValues_MPIBAIJ_MatScalar(B,1,&col,bs,rvals,a,INSERT_VALUES);CHKERRQ(ierr);
16340ac07820SSatish Balay         col++; a += bs;
16350ac07820SSatish Balay       }
16360ac07820SSatish Balay     }
16370ac07820SSatish Balay   }
1638606d414cSSatish Balay   ierr = PetscFree(rvals);CHKERRQ(ierr);
16390ac07820SSatish Balay   ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
16400ac07820SSatish Balay   ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
16410ac07820SSatish Balay 
16427c922b88SBarry Smith   if (matout) {
16430ac07820SSatish Balay     *matout = B;
16440ac07820SSatish Balay   } else {
1645273d9f13SBarry Smith     ierr = MatHeaderCopy(A,B);CHKERRQ(ierr);
16460ac07820SSatish Balay   }
16473a40ed3dSBarry Smith   PetscFunctionReturn(0);
16480ac07820SSatish Balay }
16490e95ebc0SSatish Balay 
16504a2ae208SSatish Balay #undef __FUNCT__
16514a2ae208SSatish Balay #define __FUNCT__ "MatDiagonalScale_MPIBAIJ"
1652dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_MPIBAIJ(Mat mat,Vec ll,Vec rr)
16530e95ebc0SSatish Balay {
165436c4a09eSSatish Balay   Mat_MPIBAIJ    *baij = (Mat_MPIBAIJ*)mat->data;
165536c4a09eSSatish Balay   Mat            a = baij->A,b = baij->B;
1656dfbe8321SBarry Smith   PetscErrorCode ierr;
1657b24ad042SBarry Smith   PetscInt       s1,s2,s3;
16580e95ebc0SSatish Balay 
1659d64ed03dSBarry Smith   PetscFunctionBegin;
166036c4a09eSSatish Balay   ierr = MatGetLocalSize(mat,&s2,&s3);CHKERRQ(ierr);
166136c4a09eSSatish Balay   if (rr) {
166236c4a09eSSatish Balay     ierr = VecGetLocalSize(rr,&s1);CHKERRQ(ierr);
166329bbc08cSBarry Smith     if (s1!=s3) SETERRQ(PETSC_ERR_ARG_SIZ,"right vector non-conforming local size");
166436c4a09eSSatish Balay     /* Overlap communication with computation. */
166536c4a09eSSatish Balay     ierr = VecScatterBegin(rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD,baij->Mvctx);CHKERRQ(ierr);
166636c4a09eSSatish Balay   }
16670e95ebc0SSatish Balay   if (ll) {
16680e95ebc0SSatish Balay     ierr = VecGetLocalSize(ll,&s1);CHKERRQ(ierr);
166929bbc08cSBarry Smith     if (s1!=s2) SETERRQ(PETSC_ERR_ARG_SIZ,"left vector non-conforming local size");
1670a21fb8cbSBarry Smith     ierr = (*b->ops->diagonalscale)(b,ll,PETSC_NULL);CHKERRQ(ierr);
16710e95ebc0SSatish Balay   }
167236c4a09eSSatish Balay   /* scale  the diagonal block */
167336c4a09eSSatish Balay   ierr = (*a->ops->diagonalscale)(a,ll,rr);CHKERRQ(ierr);
167436c4a09eSSatish Balay 
167536c4a09eSSatish Balay   if (rr) {
167636c4a09eSSatish Balay     /* Do a scatter end and then right scale the off-diagonal block */
167736c4a09eSSatish Balay     ierr = VecScatterEnd(rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD,baij->Mvctx);CHKERRQ(ierr);
1678a21fb8cbSBarry Smith     ierr = (*b->ops->diagonalscale)(b,PETSC_NULL,baij->lvec);CHKERRQ(ierr);
167936c4a09eSSatish Balay   }
168036c4a09eSSatish Balay 
16813a40ed3dSBarry Smith   PetscFunctionReturn(0);
16820e95ebc0SSatish Balay }
16830e95ebc0SSatish Balay 
16844a2ae208SSatish Balay #undef __FUNCT__
16854a2ae208SSatish Balay #define __FUNCT__ "MatZeroRows_MPIBAIJ"
1686f4df32b1SMatthew Knepley PetscErrorCode MatZeroRows_MPIBAIJ(Mat A,PetscInt N,const PetscInt rows[],PetscScalar diag)
16870ac07820SSatish Balay {
16880ac07820SSatish Balay   Mat_MPIBAIJ    *l = (Mat_MPIBAIJ*)A->data;
16896849ba73SBarry Smith   PetscErrorCode ierr;
1690b24ad042SBarry Smith   PetscMPIInt    imdex,size = l->size,n,rank = l->rank;
1691899cda47SBarry Smith   PetscInt       i,*owners = A->rmap.range;
1692b24ad042SBarry Smith   PetscInt       *nprocs,j,idx,nsends,row;
1693b24ad042SBarry Smith   PetscInt       nmax,*svalues,*starts,*owner,nrecvs;
16946543fbbaSBarry Smith   PetscInt       *rvalues,tag = A->tag,count,base,slen,*source,lastidx = -1;
1695357c27ecSBarry Smith   PetscInt       *lens,*lrows,*values,rstart_bs=A->rmap.rstart;
16960ac07820SSatish Balay   MPI_Comm       comm = A->comm;
16970ac07820SSatish Balay   MPI_Request    *send_waits,*recv_waits;
16980ac07820SSatish Balay   MPI_Status     recv_status,*send_status;
16996543fbbaSBarry Smith #if defined(PETSC_DEBUG)
17006543fbbaSBarry Smith   PetscTruth     found = PETSC_FALSE;
17016543fbbaSBarry Smith #endif
17020ac07820SSatish Balay 
1703d64ed03dSBarry Smith   PetscFunctionBegin;
17040ac07820SSatish Balay   /*  first count number of contributors to each processor */
1705b24ad042SBarry Smith   ierr  = PetscMalloc(2*size*sizeof(PetscInt),&nprocs);CHKERRQ(ierr);
1706b24ad042SBarry Smith   ierr  = PetscMemzero(nprocs,2*size*sizeof(PetscInt));CHKERRQ(ierr);
1707b24ad042SBarry Smith   ierr  = PetscMalloc((N+1)*sizeof(PetscInt),&owner);CHKERRQ(ierr); /* see note*/
17086543fbbaSBarry Smith   j = 0;
17090ac07820SSatish Balay   for (i=0; i<N; i++) {
17106543fbbaSBarry Smith     if (lastidx > (idx = rows[i])) j = 0;
17116543fbbaSBarry Smith     lastidx = idx;
17126543fbbaSBarry Smith     for (; j<size; j++) {
1713357c27ecSBarry Smith       if (idx >= owners[j] && idx < owners[j+1]) {
17146543fbbaSBarry Smith         nprocs[2*j]++;
17156543fbbaSBarry Smith         nprocs[2*j+1] = 1;
17166543fbbaSBarry Smith         owner[i] = j;
17176543fbbaSBarry Smith #if defined(PETSC_DEBUG)
17186543fbbaSBarry Smith         found = PETSC_TRUE;
17196543fbbaSBarry Smith #endif
17206543fbbaSBarry Smith         break;
17210ac07820SSatish Balay       }
17220ac07820SSatish Balay     }
17236543fbbaSBarry Smith #if defined(PETSC_DEBUG)
172429bbc08cSBarry Smith     if (!found) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Index out of range");
17256543fbbaSBarry Smith     found = PETSC_FALSE;
17266543fbbaSBarry Smith #endif
17270ac07820SSatish Balay   }
1728c1dc657dSBarry Smith   nsends = 0;  for (i=0; i<size; i++) { nsends += nprocs[2*i+1];}
17290ac07820SSatish Balay 
17300ac07820SSatish Balay   /* inform other processors of number of messages and max length*/
1731c1dc657dSBarry Smith   ierr = PetscMaxSum(comm,nprocs,&nmax,&nrecvs);CHKERRQ(ierr);
17320ac07820SSatish Balay 
17330ac07820SSatish Balay   /* post receives:   */
1734b24ad042SBarry Smith   ierr = PetscMalloc((nrecvs+1)*(nmax+1)*sizeof(PetscInt),&rvalues);CHKERRQ(ierr);
1735b0a32e0cSBarry Smith   ierr = PetscMalloc((nrecvs+1)*sizeof(MPI_Request),&recv_waits);CHKERRQ(ierr);
17360ac07820SSatish Balay   for (i=0; i<nrecvs; i++) {
1737b24ad042SBarry Smith     ierr = MPI_Irecv(rvalues+nmax*i,nmax,MPIU_INT,MPI_ANY_SOURCE,tag,comm,recv_waits+i);CHKERRQ(ierr);
17380ac07820SSatish Balay   }
17390ac07820SSatish Balay 
17400ac07820SSatish Balay   /* do sends:
17410ac07820SSatish Balay      1) starts[i] gives the starting index in svalues for stuff going to
17420ac07820SSatish Balay      the ith processor
17430ac07820SSatish Balay   */
1744b24ad042SBarry Smith   ierr = PetscMalloc((N+1)*sizeof(PetscInt),&svalues);CHKERRQ(ierr);
1745b0a32e0cSBarry Smith   ierr = PetscMalloc((nsends+1)*sizeof(MPI_Request),&send_waits);CHKERRQ(ierr);
1746b24ad042SBarry Smith   ierr = PetscMalloc((size+1)*sizeof(PetscInt),&starts);CHKERRQ(ierr);
17470ac07820SSatish Balay   starts[0]  = 0;
1748c1dc657dSBarry Smith   for (i=1; i<size; i++) { starts[i] = starts[i-1] + nprocs[2*i-2];}
17490ac07820SSatish Balay   for (i=0; i<N; i++) {
17500ac07820SSatish Balay     svalues[starts[owner[i]]++] = rows[i];
17510ac07820SSatish Balay   }
17520ac07820SSatish Balay 
17530ac07820SSatish Balay   starts[0] = 0;
1754c1dc657dSBarry Smith   for (i=1; i<size+1; i++) { starts[i] = starts[i-1] + nprocs[2*i-2];}
17550ac07820SSatish Balay   count = 0;
17560ac07820SSatish Balay   for (i=0; i<size; i++) {
1757c1dc657dSBarry Smith     if (nprocs[2*i+1]) {
1758b24ad042SBarry Smith       ierr = MPI_Isend(svalues+starts[i],nprocs[2*i],MPIU_INT,i,tag,comm,send_waits+count++);CHKERRQ(ierr);
17590ac07820SSatish Balay     }
17600ac07820SSatish Balay   }
1761606d414cSSatish Balay   ierr = PetscFree(starts);CHKERRQ(ierr);
17620ac07820SSatish Balay 
1763357c27ecSBarry Smith   base = owners[rank];
17640ac07820SSatish Balay 
17650ac07820SSatish Balay   /*  wait on receives */
1766b24ad042SBarry Smith   ierr   = PetscMalloc(2*(nrecvs+1)*sizeof(PetscInt),&lens);CHKERRQ(ierr);
17670ac07820SSatish Balay   source = lens + nrecvs;
17680ac07820SSatish Balay   count  = nrecvs; slen = 0;
17690ac07820SSatish Balay   while (count) {
1770ca161407SBarry Smith     ierr = MPI_Waitany(nrecvs,recv_waits,&imdex,&recv_status);CHKERRQ(ierr);
17710ac07820SSatish Balay     /* unpack receives into our local space */
1772b24ad042SBarry Smith     ierr = MPI_Get_count(&recv_status,MPIU_INT,&n);CHKERRQ(ierr);
17730ac07820SSatish Balay     source[imdex]  = recv_status.MPI_SOURCE;
17740ac07820SSatish Balay     lens[imdex]    = n;
17750ac07820SSatish Balay     slen          += n;
17760ac07820SSatish Balay     count--;
17770ac07820SSatish Balay   }
1778606d414cSSatish Balay   ierr = PetscFree(recv_waits);CHKERRQ(ierr);
17790ac07820SSatish Balay 
17800ac07820SSatish Balay   /* move the data into the send scatter */
1781b24ad042SBarry Smith   ierr = PetscMalloc((slen+1)*sizeof(PetscInt),&lrows);CHKERRQ(ierr);
17820ac07820SSatish Balay   count = 0;
17830ac07820SSatish Balay   for (i=0; i<nrecvs; i++) {
17840ac07820SSatish Balay     values = rvalues + i*nmax;
17850ac07820SSatish Balay     for (j=0; j<lens[i]; j++) {
17860ac07820SSatish Balay       lrows[count++] = values[j] - base;
17870ac07820SSatish Balay     }
17880ac07820SSatish Balay   }
1789606d414cSSatish Balay   ierr = PetscFree(rvalues);CHKERRQ(ierr);
1790606d414cSSatish Balay   ierr = PetscFree(lens);CHKERRQ(ierr);
1791606d414cSSatish Balay   ierr = PetscFree(owner);CHKERRQ(ierr);
1792606d414cSSatish Balay   ierr = PetscFree(nprocs);CHKERRQ(ierr);
17930ac07820SSatish Balay 
17940ac07820SSatish Balay   /* actually zap the local rows */
179572dacd9aSBarry Smith   /*
179672dacd9aSBarry Smith         Zero the required rows. If the "diagonal block" of the matrix
1797a8c7a070SBarry Smith      is square and the user wishes to set the diagonal we use separate
179872dacd9aSBarry Smith      code so that MatSetValues() is not called for each diagonal allocating
179972dacd9aSBarry Smith      new memory, thus calling lots of mallocs and slowing things down.
180072dacd9aSBarry Smith 
1801f4df32b1SMatthew Knepley        Contributed by: Matthew Knepley
180272dacd9aSBarry Smith   */
18039c957beeSSatish Balay   /* must zero l->B before l->A because the (diag) case below may put values into l->B*/
1804f4df32b1SMatthew Knepley   ierr = MatZeroRows_SeqBAIJ(l->B,slen,lrows,0.0);CHKERRQ(ierr);
1805899cda47SBarry Smith   if ((diag != 0.0) && (l->A->rmap.N == l->A->cmap.N)) {
1806f4df32b1SMatthew Knepley     ierr = MatZeroRows_SeqBAIJ(l->A,slen,lrows,diag);CHKERRQ(ierr);
1807f4df32b1SMatthew Knepley   } else if (diag != 0.0) {
1808f4df32b1SMatthew Knepley     ierr = MatZeroRows_SeqBAIJ(l->A,slen,lrows,0.0);CHKERRQ(ierr);
1809fa46199cSSatish Balay     if (((Mat_SeqBAIJ*)l->A->data)->nonew) {
181029bbc08cSBarry Smith       SETERRQ(PETSC_ERR_SUP,"MatZeroRows() on rectangular matrices cannot be used with the Mat options \n\
1811fa46199cSSatish Balay MAT_NO_NEW_NONZERO_LOCATIONS,MAT_NEW_NONZERO_LOCATION_ERR,MAT_NEW_NONZERO_ALLOCATION_ERR");
18126525c446SSatish Balay     }
1813a07cd24cSSatish Balay     for (i=0; i<slen; i++) {
1814a07cd24cSSatish Balay       row  = lrows[i] + rstart_bs;
1815f4df32b1SMatthew Knepley       ierr = MatSetValues(A,1,&row,1,&row,&diag,INSERT_VALUES);CHKERRQ(ierr);
1816a07cd24cSSatish Balay     }
1817a07cd24cSSatish Balay     ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
1818a07cd24cSSatish Balay     ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
18199c957beeSSatish Balay   } else {
1820f4df32b1SMatthew Knepley     ierr = MatZeroRows_SeqBAIJ(l->A,slen,lrows,0.0);CHKERRQ(ierr);
1821a07cd24cSSatish Balay   }
18229c957beeSSatish Balay 
1823606d414cSSatish Balay   ierr = PetscFree(lrows);CHKERRQ(ierr);
1824a07cd24cSSatish Balay 
18250ac07820SSatish Balay   /* wait on sends */
18260ac07820SSatish Balay   if (nsends) {
182782502324SSatish Balay     ierr = PetscMalloc(nsends*sizeof(MPI_Status),&send_status);CHKERRQ(ierr);
1828ca161407SBarry Smith     ierr = MPI_Waitall(nsends,send_waits,send_status);CHKERRQ(ierr);
1829606d414cSSatish Balay     ierr = PetscFree(send_status);CHKERRQ(ierr);
18300ac07820SSatish Balay   }
1831606d414cSSatish Balay   ierr = PetscFree(send_waits);CHKERRQ(ierr);
1832606d414cSSatish Balay   ierr = PetscFree(svalues);CHKERRQ(ierr);
18330ac07820SSatish Balay 
18343a40ed3dSBarry Smith   PetscFunctionReturn(0);
18350ac07820SSatish Balay }
183672dacd9aSBarry Smith 
18374a2ae208SSatish Balay #undef __FUNCT__
18384a2ae208SSatish Balay #define __FUNCT__ "MatSetUnfactored_MPIBAIJ"
1839dfbe8321SBarry Smith PetscErrorCode MatSetUnfactored_MPIBAIJ(Mat A)
1840bb5a7306SBarry Smith {
1841bb5a7306SBarry Smith   Mat_MPIBAIJ    *a   = (Mat_MPIBAIJ*)A->data;
1842dfbe8321SBarry Smith   PetscErrorCode ierr;
1843d64ed03dSBarry Smith 
1844d64ed03dSBarry Smith   PetscFunctionBegin;
1845bb5a7306SBarry Smith   ierr = MatSetUnfactored(a->A);CHKERRQ(ierr);
18463a40ed3dSBarry Smith   PetscFunctionReturn(0);
1847bb5a7306SBarry Smith }
1848bb5a7306SBarry Smith 
18496849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIBAIJ(Mat,MatDuplicateOption,Mat *);
18500ac07820SSatish Balay 
18514a2ae208SSatish Balay #undef __FUNCT__
18524a2ae208SSatish Balay #define __FUNCT__ "MatEqual_MPIBAIJ"
1853dfbe8321SBarry Smith PetscErrorCode MatEqual_MPIBAIJ(Mat A,Mat B,PetscTruth *flag)
18547fc3c18eSBarry Smith {
18557fc3c18eSBarry Smith   Mat_MPIBAIJ    *matB = (Mat_MPIBAIJ*)B->data,*matA = (Mat_MPIBAIJ*)A->data;
18567fc3c18eSBarry Smith   Mat            a,b,c,d;
18577fc3c18eSBarry Smith   PetscTruth     flg;
1858dfbe8321SBarry Smith   PetscErrorCode ierr;
18597fc3c18eSBarry Smith 
18607fc3c18eSBarry Smith   PetscFunctionBegin;
18617fc3c18eSBarry Smith   a = matA->A; b = matA->B;
18627fc3c18eSBarry Smith   c = matB->A; d = matB->B;
18637fc3c18eSBarry Smith 
18647fc3c18eSBarry Smith   ierr = MatEqual(a,c,&flg);CHKERRQ(ierr);
1865abc0a331SBarry Smith   if (flg) {
18667fc3c18eSBarry Smith     ierr = MatEqual(b,d,&flg);CHKERRQ(ierr);
18677fc3c18eSBarry Smith   }
18687fc3c18eSBarry Smith   ierr = MPI_Allreduce(&flg,flag,1,MPI_INT,MPI_LAND,A->comm);CHKERRQ(ierr);
18697fc3c18eSBarry Smith   PetscFunctionReturn(0);
18707fc3c18eSBarry Smith }
18717fc3c18eSBarry Smith 
18723c896bc6SHong Zhang #undef __FUNCT__
18733c896bc6SHong Zhang #define __FUNCT__ "MatCopy_MPIBAIJ"
18743c896bc6SHong Zhang PetscErrorCode MatCopy_MPIBAIJ(Mat A,Mat B,MatStructure str)
18753c896bc6SHong Zhang {
18763c896bc6SHong Zhang   PetscErrorCode ierr;
18773c896bc6SHong Zhang   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ *)A->data;
18783c896bc6SHong Zhang   Mat_MPIBAIJ    *b = (Mat_MPIBAIJ *)B->data;
18793c896bc6SHong Zhang 
18803c896bc6SHong Zhang   PetscFunctionBegin;
18813c896bc6SHong Zhang   /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */
18823c896bc6SHong Zhang   if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) {
18833c896bc6SHong Zhang     ierr = MatCopy_Basic(A,B,str);CHKERRQ(ierr);
18843c896bc6SHong Zhang   } else {
18853c896bc6SHong Zhang     ierr = MatCopy(a->A,b->A,str);CHKERRQ(ierr);
18863c896bc6SHong Zhang     ierr = MatCopy(a->B,b->B,str);CHKERRQ(ierr);
18873c896bc6SHong Zhang   }
18883c896bc6SHong Zhang   PetscFunctionReturn(0);
18893c896bc6SHong Zhang }
1890273d9f13SBarry Smith 
18914a2ae208SSatish Balay #undef __FUNCT__
18924a2ae208SSatish Balay #define __FUNCT__ "MatSetUpPreallocation_MPIBAIJ"
1893dfbe8321SBarry Smith PetscErrorCode MatSetUpPreallocation_MPIBAIJ(Mat A)
1894273d9f13SBarry Smith {
1895dfbe8321SBarry Smith   PetscErrorCode ierr;
1896273d9f13SBarry Smith 
1897273d9f13SBarry Smith   PetscFunctionBegin;
18987edd0491SSatish Balay   ierr =  MatMPIBAIJSetPreallocation(A,PetscMax(A->rmap.bs,1),PETSC_DEFAULT,0,PETSC_DEFAULT,0);CHKERRQ(ierr);
1899273d9f13SBarry Smith   PetscFunctionReturn(0);
1900273d9f13SBarry Smith }
1901273d9f13SBarry Smith 
19024fe895cdSHong Zhang #include "petscblaslapack.h"
19034fe895cdSHong Zhang #undef __FUNCT__
19044fe895cdSHong Zhang #define __FUNCT__ "MatAXPY_MPIBAIJ"
19054fe895cdSHong Zhang PetscErrorCode MatAXPY_MPIBAIJ(Mat Y,PetscScalar a,Mat X,MatStructure str)
19064fe895cdSHong Zhang {
19074fe895cdSHong Zhang   PetscErrorCode ierr;
19084fe895cdSHong Zhang   Mat_MPIBAIJ    *xx=(Mat_MPIBAIJ *)X->data,*yy=(Mat_MPIBAIJ *)Y->data;
19094fe895cdSHong Zhang   PetscBLASInt   bnz,one=1;
19104fe895cdSHong Zhang   Mat_SeqBAIJ    *x,*y;
19114fe895cdSHong Zhang 
19124fe895cdSHong Zhang   PetscFunctionBegin;
19134fe895cdSHong Zhang   if (str == SAME_NONZERO_PATTERN) {
19144fe895cdSHong Zhang     PetscScalar alpha = a;
19154fe895cdSHong Zhang     x = (Mat_SeqBAIJ *)xx->A->data;
19164fe895cdSHong Zhang     y = (Mat_SeqBAIJ *)yy->A->data;
19174fe895cdSHong Zhang     bnz = (PetscBLASInt)x->nz;
19184fe895cdSHong Zhang     BLASaxpy_(&bnz,&alpha,x->a,&one,y->a,&one);
19194fe895cdSHong Zhang     x = (Mat_SeqBAIJ *)xx->B->data;
19204fe895cdSHong Zhang     y = (Mat_SeqBAIJ *)yy->B->data;
19214fe895cdSHong Zhang     bnz = (PetscBLASInt)x->nz;
19224fe895cdSHong Zhang     BLASaxpy_(&bnz,&alpha,x->a,&one,y->a,&one);
19234fe895cdSHong Zhang   } else {
19244fe895cdSHong Zhang     ierr = MatAXPY_Basic(Y,a,X,str);CHKERRQ(ierr);
19254fe895cdSHong Zhang   }
19264fe895cdSHong Zhang   PetscFunctionReturn(0);
19274fe895cdSHong Zhang }
19284fe895cdSHong Zhang 
192999cafbc1SBarry Smith #undef __FUNCT__
193099cafbc1SBarry Smith #define __FUNCT__ "MatRealPart_MPIBAIJ"
193199cafbc1SBarry Smith PetscErrorCode MatRealPart_MPIBAIJ(Mat A)
193299cafbc1SBarry Smith {
193399cafbc1SBarry Smith   Mat_MPIBAIJ   *a = (Mat_MPIBAIJ*)A->data;
193499cafbc1SBarry Smith   PetscErrorCode ierr;
193599cafbc1SBarry Smith 
193699cafbc1SBarry Smith   PetscFunctionBegin;
193799cafbc1SBarry Smith   ierr = MatRealPart(a->A);CHKERRQ(ierr);
193899cafbc1SBarry Smith   ierr = MatRealPart(a->B);CHKERRQ(ierr);
193999cafbc1SBarry Smith   PetscFunctionReturn(0);
194099cafbc1SBarry Smith }
194199cafbc1SBarry Smith 
194299cafbc1SBarry Smith #undef __FUNCT__
194399cafbc1SBarry Smith #define __FUNCT__ "MatImaginaryPart_MPIBAIJ"
194499cafbc1SBarry Smith PetscErrorCode MatImaginaryPart_MPIBAIJ(Mat A)
194599cafbc1SBarry Smith {
194699cafbc1SBarry Smith   Mat_MPIBAIJ   *a = (Mat_MPIBAIJ*)A->data;
194799cafbc1SBarry Smith   PetscErrorCode ierr;
194899cafbc1SBarry Smith 
194999cafbc1SBarry Smith   PetscFunctionBegin;
195099cafbc1SBarry Smith   ierr = MatImaginaryPart(a->A);CHKERRQ(ierr);
195199cafbc1SBarry Smith   ierr = MatImaginaryPart(a->B);CHKERRQ(ierr);
195299cafbc1SBarry Smith   PetscFunctionReturn(0);
195399cafbc1SBarry Smith }
195499cafbc1SBarry Smith 
195579bdfe76SSatish Balay /* -------------------------------------------------------------------*/
1956cc2dc46cSBarry Smith static struct _MatOps MatOps_Values = {
1957cc2dc46cSBarry Smith        MatSetValues_MPIBAIJ,
1958cc2dc46cSBarry Smith        MatGetRow_MPIBAIJ,
1959cc2dc46cSBarry Smith        MatRestoreRow_MPIBAIJ,
1960cc2dc46cSBarry Smith        MatMult_MPIBAIJ,
196197304618SKris Buschelman /* 4*/ MatMultAdd_MPIBAIJ,
19627c922b88SBarry Smith        MatMultTranspose_MPIBAIJ,
19637c922b88SBarry Smith        MatMultTransposeAdd_MPIBAIJ,
1964cc2dc46cSBarry Smith        0,
1965cc2dc46cSBarry Smith        0,
1966cc2dc46cSBarry Smith        0,
196797304618SKris Buschelman /*10*/ 0,
1968cc2dc46cSBarry Smith        0,
1969cc2dc46cSBarry Smith        0,
1970cc2dc46cSBarry Smith        0,
1971cc2dc46cSBarry Smith        MatTranspose_MPIBAIJ,
197297304618SKris Buschelman /*15*/ MatGetInfo_MPIBAIJ,
19737fc3c18eSBarry Smith        MatEqual_MPIBAIJ,
1974cc2dc46cSBarry Smith        MatGetDiagonal_MPIBAIJ,
1975cc2dc46cSBarry Smith        MatDiagonalScale_MPIBAIJ,
1976cc2dc46cSBarry Smith        MatNorm_MPIBAIJ,
197797304618SKris Buschelman /*20*/ MatAssemblyBegin_MPIBAIJ,
1978cc2dc46cSBarry Smith        MatAssemblyEnd_MPIBAIJ,
1979cc2dc46cSBarry Smith        0,
1980cc2dc46cSBarry Smith        MatSetOption_MPIBAIJ,
1981cc2dc46cSBarry Smith        MatZeroEntries_MPIBAIJ,
198297304618SKris Buschelman /*25*/ MatZeroRows_MPIBAIJ,
1983cc2dc46cSBarry Smith        0,
1984cc2dc46cSBarry Smith        0,
1985cc2dc46cSBarry Smith        0,
1986cc2dc46cSBarry Smith        0,
198797304618SKris Buschelman /*30*/ MatSetUpPreallocation_MPIBAIJ,
1988273d9f13SBarry Smith        0,
1989cc2dc46cSBarry Smith        0,
1990cc2dc46cSBarry Smith        0,
1991cc2dc46cSBarry Smith        0,
199297304618SKris Buschelman /*35*/ MatDuplicate_MPIBAIJ,
1993cc2dc46cSBarry Smith        0,
1994cc2dc46cSBarry Smith        0,
1995cc2dc46cSBarry Smith        0,
1996cc2dc46cSBarry Smith        0,
19974fe895cdSHong Zhang /*40*/ MatAXPY_MPIBAIJ,
1998cc2dc46cSBarry Smith        MatGetSubMatrices_MPIBAIJ,
1999cc2dc46cSBarry Smith        MatIncreaseOverlap_MPIBAIJ,
2000cc2dc46cSBarry Smith        MatGetValues_MPIBAIJ,
20013c896bc6SHong Zhang        MatCopy_MPIBAIJ,
2002*8c07d4e3SBarry Smith /*45*/ 0,
2003cc2dc46cSBarry Smith        MatScale_MPIBAIJ,
2004cc2dc46cSBarry Smith        0,
2005cc2dc46cSBarry Smith        0,
2006cc2dc46cSBarry Smith        0,
2007521d7252SBarry Smith /*50*/ 0,
2008cc2dc46cSBarry Smith        0,
2009cc2dc46cSBarry Smith        0,
2010cc2dc46cSBarry Smith        0,
2011cc2dc46cSBarry Smith        0,
201297304618SKris Buschelman /*55*/ 0,
2013cc2dc46cSBarry Smith        0,
2014cc2dc46cSBarry Smith        MatSetUnfactored_MPIBAIJ,
2015cc2dc46cSBarry Smith        0,
2016cc2dc46cSBarry Smith        MatSetValuesBlocked_MPIBAIJ,
201797304618SKris Buschelman /*60*/ 0,
2018f14a1c24SBarry Smith        MatDestroy_MPIBAIJ,
2019f14a1c24SBarry Smith        MatView_MPIBAIJ,
2020357abbc8SBarry Smith        0,
20217843d17aSBarry Smith        0,
202297304618SKris Buschelman /*65*/ 0,
20237843d17aSBarry Smith        0,
20247843d17aSBarry Smith        0,
20257843d17aSBarry Smith        0,
20267843d17aSBarry Smith        0,
202797304618SKris Buschelman /*70*/ MatGetRowMax_MPIBAIJ,
20287843d17aSBarry Smith        0,
202997304618SKris Buschelman        0,
203097304618SKris Buschelman        0,
203197304618SKris Buschelman        0,
203297304618SKris Buschelman /*75*/ 0,
203397304618SKris Buschelman        0,
203497304618SKris Buschelman        0,
203597304618SKris Buschelman        0,
203697304618SKris Buschelman        0,
203797304618SKris Buschelman /*80*/ 0,
203897304618SKris Buschelman        0,
203997304618SKris Buschelman        0,
204097304618SKris Buschelman        0,
2041865e5f61SKris Buschelman        MatLoad_MPIBAIJ,
2042865e5f61SKris Buschelman /*85*/ 0,
2043865e5f61SKris Buschelman        0,
2044865e5f61SKris Buschelman        0,
2045865e5f61SKris Buschelman        0,
2046865e5f61SKris Buschelman        0,
2047865e5f61SKris Buschelman /*90*/ 0,
2048865e5f61SKris Buschelman        0,
2049865e5f61SKris Buschelman        0,
2050865e5f61SKris Buschelman        0,
2051865e5f61SKris Buschelman        0,
2052865e5f61SKris Buschelman /*95*/ 0,
2053865e5f61SKris Buschelman        0,
2054865e5f61SKris Buschelman        0,
205599cafbc1SBarry Smith        0,
205699cafbc1SBarry Smith        0,
205799cafbc1SBarry Smith /*100*/0,
205899cafbc1SBarry Smith        0,
205999cafbc1SBarry Smith        0,
206099cafbc1SBarry Smith        0,
206199cafbc1SBarry Smith        0,
206299cafbc1SBarry Smith /*105*/0,
206399cafbc1SBarry Smith        MatRealPart_MPIBAIJ,
206499cafbc1SBarry Smith        MatImaginaryPart_MPIBAIJ};
206579bdfe76SSatish Balay 
20665ef9f2a5SBarry Smith 
2067e18c124aSSatish Balay EXTERN_C_BEGIN
20684a2ae208SSatish Balay #undef __FUNCT__
20694a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonalBlock_MPIBAIJ"
2070be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatGetDiagonalBlock_MPIBAIJ(Mat A,PetscTruth *iscopy,MatReuse reuse,Mat *a)
20715ef9f2a5SBarry Smith {
20725ef9f2a5SBarry Smith   PetscFunctionBegin;
20735ef9f2a5SBarry Smith   *a      = ((Mat_MPIBAIJ *)A->data)->A;
20745ef9f2a5SBarry Smith   *iscopy = PETSC_FALSE;
20755ef9f2a5SBarry Smith   PetscFunctionReturn(0);
20765ef9f2a5SBarry Smith }
2077e18c124aSSatish Balay EXTERN_C_END
207879bdfe76SSatish Balay 
2079273d9f13SBarry Smith EXTERN_C_BEGIN
2080f69a0ea3SMatthew Knepley extern PetscErrorCode PETSCMAT_DLLEXPORT MatConvert_MPIBAIJ_MPISBAIJ(Mat, MatType,MatReuse,Mat*);
2081d94109b8SHong Zhang EXTERN_C_END
2082d94109b8SHong Zhang 
2083aac34f13SBarry Smith #undef __FUNCT__
2084aac34f13SBarry Smith #define __FUNCT__ "MatMPIBAIJSetPreallocationCSR_MPIBAIJ"
2085b7940d39SSatish Balay PetscErrorCode MatMPIBAIJSetPreallocationCSR_MPIBAIJ(Mat B,PetscInt bs,const PetscInt Ii[],const PetscInt J[],const PetscScalar v[])
2086aac34f13SBarry Smith {
2087899cda47SBarry Smith   Mat_MPIBAIJ    *baij = (Mat_MPIBAIJ*)B->data;
2088899cda47SBarry Smith   PetscInt       m = B->rmap.n/bs,cstart = baij->cstartbs, cend = baij->cendbs,j,nnz,i,d;
2089899cda47SBarry Smith   PetscInt       *d_nnz,*o_nnz,nnz_max = 0,rstart = baij->rstartbs,ii;
2090aac34f13SBarry Smith   const PetscInt *JJ;
2091aac34f13SBarry Smith   PetscScalar    *values;
2092aac34f13SBarry Smith   PetscErrorCode ierr;
2093aac34f13SBarry Smith 
2094aac34f13SBarry Smith   PetscFunctionBegin;
2095aac34f13SBarry Smith #if defined(PETSC_OPT_g)
2096b7940d39SSatish Balay   if (Ii[0]) SETERRQ1(PETSC_ERR_ARG_RANGE,"Ii[0] must be 0 it is %D",Ii[0]);
2097aac34f13SBarry Smith #endif
2098aac34f13SBarry Smith   ierr  = PetscMalloc((2*m+1)*sizeof(PetscInt),&d_nnz);CHKERRQ(ierr);
2099aac34f13SBarry Smith   o_nnz = d_nnz + m;
2100aac34f13SBarry Smith 
2101aac34f13SBarry Smith   for (i=0; i<m; i++) {
2102b7940d39SSatish Balay     nnz     = Ii[i+1]- Ii[i];
2103b7940d39SSatish Balay     JJ      = J + Ii[i];
2104aac34f13SBarry Smith     nnz_max = PetscMax(nnz_max,nnz);
2105aac34f13SBarry Smith #if defined(PETSC_OPT_g)
2106aac34f13SBarry Smith     if (nnz < 0) SETERRQ1(PETSC_ERR_ARG_RANGE,"Local row %D has a negative %D number of columns",i,nnz);
2107aac34f13SBarry Smith #endif
2108aac34f13SBarry Smith     for (j=0; j<nnz; j++) {
2109aac34f13SBarry Smith       if (*JJ >= cstart) break;
2110aac34f13SBarry Smith       JJ++;
2111aac34f13SBarry Smith     }
2112aac34f13SBarry Smith     d = 0;
2113aac34f13SBarry Smith     for (; j<nnz; j++) {
2114aac34f13SBarry Smith       if (*JJ++ >= cend) break;
2115aac34f13SBarry Smith       d++;
2116aac34f13SBarry Smith     }
2117aac34f13SBarry Smith     d_nnz[i] = d;
2118aac34f13SBarry Smith     o_nnz[i] = nnz - d;
2119aac34f13SBarry Smith   }
2120aac34f13SBarry Smith   ierr = MatMPIBAIJSetPreallocation(B,bs,0,d_nnz,0,o_nnz);CHKERRQ(ierr);
2121aac34f13SBarry Smith   ierr = PetscFree(d_nnz);CHKERRQ(ierr);
2122aac34f13SBarry Smith 
2123aac34f13SBarry Smith   if (v) values = (PetscScalar*)v;
2124aac34f13SBarry Smith   else {
2125aac34f13SBarry Smith     ierr = PetscMalloc(bs*bs*(nnz_max+1)*sizeof(PetscScalar),&values);CHKERRQ(ierr);
2126aac34f13SBarry Smith     ierr = PetscMemzero(values,bs*bs*nnz_max*sizeof(PetscScalar));CHKERRQ(ierr);
2127aac34f13SBarry Smith   }
2128aac34f13SBarry Smith 
2129aac34f13SBarry Smith   ierr = MatSetOption(B,MAT_COLUMNS_SORTED);CHKERRQ(ierr);
2130aac34f13SBarry Smith   for (i=0; i<m; i++) {
2131aac34f13SBarry Smith     ii   = i + rstart;
2132b7940d39SSatish Balay     nnz  = Ii[i+1]- Ii[i];
2133b7940d39SSatish Balay     ierr = MatSetValuesBlocked_MPIBAIJ(B,1,&ii,nnz,J+Ii[i],values+(v ? Ii[i] : 0),INSERT_VALUES);CHKERRQ(ierr);
2134aac34f13SBarry Smith   }
2135aac34f13SBarry Smith   ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
2136aac34f13SBarry Smith   ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
2137aac34f13SBarry Smith   ierr = MatSetOption(B,MAT_COLUMNS_UNSORTED);CHKERRQ(ierr);
2138aac34f13SBarry Smith 
2139aac34f13SBarry Smith   if (!v) {
2140aac34f13SBarry Smith     ierr = PetscFree(values);CHKERRQ(ierr);
2141aac34f13SBarry Smith   }
2142aac34f13SBarry Smith   PetscFunctionReturn(0);
2143aac34f13SBarry Smith }
2144aac34f13SBarry Smith 
2145aac34f13SBarry Smith #undef __FUNCT__
2146aac34f13SBarry Smith #define __FUNCT__ "MatMPIBAIJSetPreallocationCSR"
2147aac34f13SBarry Smith /*@C
2148aac34f13SBarry Smith    MatMPIBAIJSetPreallocationCSR - Allocates memory for a sparse parallel matrix in AIJ format
2149aac34f13SBarry Smith    (the default parallel PETSc format).
2150aac34f13SBarry Smith 
2151aac34f13SBarry Smith    Collective on MPI_Comm
2152aac34f13SBarry Smith 
2153aac34f13SBarry Smith    Input Parameters:
2154aac34f13SBarry Smith +  A - the matrix
2155aac34f13SBarry Smith .  i - the indices into j for the start of each local row (starts with zero)
2156aac34f13SBarry Smith .  j - the column indices for each local row (starts with zero) these must be sorted for each row
2157aac34f13SBarry Smith -  v - optional values in the matrix
2158aac34f13SBarry Smith 
2159aac34f13SBarry Smith    Level: developer
2160aac34f13SBarry Smith 
2161aac34f13SBarry Smith .keywords: matrix, aij, compressed row, sparse, parallel
2162aac34f13SBarry Smith 
2163aac34f13SBarry Smith .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatMPIBAIJSetPreallocation(), MatCreateMPIAIJ(), MPIAIJ
2164aac34f13SBarry Smith @*/
2165be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPIBAIJSetPreallocationCSR(Mat B,PetscInt bs,const PetscInt i[],const PetscInt j[], const PetscScalar v[])
2166aac34f13SBarry Smith {
2167aac34f13SBarry Smith   PetscErrorCode ierr,(*f)(Mat,PetscInt,const PetscInt[],const PetscInt[],const PetscScalar[]);
2168aac34f13SBarry Smith 
2169aac34f13SBarry Smith   PetscFunctionBegin;
2170aac34f13SBarry Smith   ierr = PetscObjectQueryFunction((PetscObject)B,"MatMPIBAIJSetPreallocationCSR_C",(void (**)(void))&f);CHKERRQ(ierr);
2171aac34f13SBarry Smith   if (f) {
2172aac34f13SBarry Smith     ierr = (*f)(B,bs,i,j,v);CHKERRQ(ierr);
2173aac34f13SBarry Smith   }
2174aac34f13SBarry Smith   PetscFunctionReturn(0);
2175aac34f13SBarry Smith }
2176aac34f13SBarry Smith 
2177d94109b8SHong Zhang EXTERN_C_BEGIN
21784a2ae208SSatish Balay #undef __FUNCT__
2179a23d5eceSKris Buschelman #define __FUNCT__ "MatMPIBAIJSetPreallocation_MPIBAIJ"
2180be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPIBAIJSetPreallocation_MPIBAIJ(Mat B,PetscInt bs,PetscInt d_nz,PetscInt *d_nnz,PetscInt o_nz,PetscInt *o_nnz)
2181a23d5eceSKris Buschelman {
2182a23d5eceSKris Buschelman   Mat_MPIBAIJ    *b;
2183dfbe8321SBarry Smith   PetscErrorCode ierr;
2184b24ad042SBarry Smith   PetscInt       i;
2185a23d5eceSKris Buschelman 
2186a23d5eceSKris Buschelman   PetscFunctionBegin;
2187a23d5eceSKris Buschelman   B->preallocated = PETSC_TRUE;
2188*8c07d4e3SBarry Smith   ierr = PetscOptionsBegin(B->comm,B->prefix,"Options for MPIBAIJ matrix","Mat");CHKERRQ(ierr);
2189*8c07d4e3SBarry Smith     ierr = PetscOptionsInt("-mat_block_size","Set the blocksize used to store the matrix","MatMPIBAIJSetPreallocation",bs,&bs,PETSC_NULL);CHKERRQ(ierr);
2190*8c07d4e3SBarry Smith   ierr = PetscOptionsEnd();CHKERRQ(ierr);
2191a23d5eceSKris Buschelman 
2192a23d5eceSKris Buschelman   if (bs < 1) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Invalid block size specified, must be positive");
2193a23d5eceSKris Buschelman   if (d_nz == PETSC_DEFAULT || d_nz == PETSC_DECIDE) d_nz = 5;
2194a23d5eceSKris Buschelman   if (o_nz == PETSC_DEFAULT || o_nz == PETSC_DECIDE) o_nz = 2;
219577431f27SBarry Smith   if (d_nz < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"d_nz cannot be less than 0: value %D",d_nz);
219677431f27SBarry Smith   if (o_nz < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"o_nz cannot be less than 0: value %D",o_nz);
2197899cda47SBarry Smith 
2198899cda47SBarry Smith   B->rmap.bs  = bs;
2199899cda47SBarry Smith   B->cmap.bs  = bs;
2200899cda47SBarry Smith   ierr = PetscMapInitialize(B->comm,&B->rmap);CHKERRQ(ierr);
2201899cda47SBarry Smith   ierr = PetscMapInitialize(B->comm,&B->cmap);CHKERRQ(ierr);
2202899cda47SBarry Smith 
2203a23d5eceSKris Buschelman   if (d_nnz) {
2204899cda47SBarry Smith     for (i=0; i<B->rmap.n/bs; i++) {
220577431f27SBarry Smith       if (d_nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"d_nnz cannot be less than -1: local row %D value %D",i,d_nnz[i]);
2206a23d5eceSKris Buschelman     }
2207a23d5eceSKris Buschelman   }
2208a23d5eceSKris Buschelman   if (o_nnz) {
2209899cda47SBarry Smith     for (i=0; i<B->rmap.n/bs; i++) {
221077431f27SBarry Smith       if (o_nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"o_nnz cannot be less than -1: local row %D value %D",i,o_nnz[i]);
2211a23d5eceSKris Buschelman     }
2212a23d5eceSKris Buschelman   }
2213a23d5eceSKris Buschelman 
2214a23d5eceSKris Buschelman   b = (Mat_MPIBAIJ*)B->data;
2215a23d5eceSKris Buschelman   b->bs2 = bs*bs;
2216899cda47SBarry Smith   b->mbs = B->rmap.n/bs;
2217899cda47SBarry Smith   b->nbs = B->cmap.n/bs;
2218899cda47SBarry Smith   b->Mbs = B->rmap.N/bs;
2219899cda47SBarry Smith   b->Nbs = B->cmap.N/bs;
2220a23d5eceSKris Buschelman 
2221a23d5eceSKris Buschelman   for (i=0; i<=b->size; i++) {
2222899cda47SBarry Smith     b->rangebs[i] = B->rmap.range[i]/bs;
2223a23d5eceSKris Buschelman   }
2224899cda47SBarry Smith   b->rstartbs = B->rmap.rstart/bs;
2225899cda47SBarry Smith   b->rendbs   = B->rmap.rend/bs;
2226899cda47SBarry Smith   b->cstartbs = B->cmap.rstart/bs;
2227899cda47SBarry Smith   b->cendbs   = B->cmap.rend/bs;
2228a23d5eceSKris Buschelman 
2229f69a0ea3SMatthew Knepley   ierr = MatCreate(PETSC_COMM_SELF,&b->A);CHKERRQ(ierr);
2230899cda47SBarry Smith   ierr = MatSetSizes(b->A,B->rmap.n,B->cmap.n,B->rmap.n,B->cmap.n);CHKERRQ(ierr);
22319c097c71SKris Buschelman   ierr = MatSetType(b->A,MATSEQBAIJ);CHKERRQ(ierr);
2232c60e587dSKris Buschelman   ierr = MatSeqBAIJSetPreallocation(b->A,bs,d_nz,d_nnz);CHKERRQ(ierr);
223352e6d16bSBarry Smith   ierr = PetscLogObjectParent(B,b->A);CHKERRQ(ierr);
2234f69a0ea3SMatthew Knepley   ierr = MatCreate(PETSC_COMM_SELF,&b->B);CHKERRQ(ierr);
2235899cda47SBarry Smith   ierr = MatSetSizes(b->B,B->rmap.n,B->cmap.N,B->rmap.n,B->cmap.N);CHKERRQ(ierr);
22369c097c71SKris Buschelman   ierr = MatSetType(b->B,MATSEQBAIJ);CHKERRQ(ierr);
2237c60e587dSKris Buschelman   ierr = MatSeqBAIJSetPreallocation(b->B,bs,o_nz,o_nnz);CHKERRQ(ierr);
223852e6d16bSBarry Smith   ierr = PetscLogObjectParent(B,b->B);CHKERRQ(ierr);
2239c60e587dSKris Buschelman 
2240a23d5eceSKris Buschelman   ierr = MatStashCreate_Private(B->comm,bs,&B->bstash);CHKERRQ(ierr);
2241a23d5eceSKris Buschelman 
2242a23d5eceSKris Buschelman   PetscFunctionReturn(0);
2243a23d5eceSKris Buschelman }
2244a23d5eceSKris Buschelman EXTERN_C_END
2245a23d5eceSKris Buschelman 
2246a23d5eceSKris Buschelman EXTERN_C_BEGIN
2247be1d678aSKris Buschelman EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatDiagonalScaleLocal_MPIBAIJ(Mat,Vec);
2248be1d678aSKris Buschelman EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatSetHashTableFactor_MPIBAIJ(Mat,PetscReal);
224992b32695SKris Buschelman EXTERN_C_END
22505bf65638SKris Buschelman 
22510bad9183SKris Buschelman /*MC
2252fafad747SKris Buschelman    MATMPIBAIJ - MATMPIBAIJ = "mpibaij" - A matrix type to be used for distributed block sparse matrices.
22530bad9183SKris Buschelman 
22540bad9183SKris Buschelman    Options Database Keys:
2255*8c07d4e3SBarry Smith + -mat_type mpibaij - sets the matrix type to "mpibaij" during a call to MatSetFromOptions()
2256*8c07d4e3SBarry Smith . -mat_block_size <bs> - set the blocksize used to store the matrix
2257*8c07d4e3SBarry Smith - -mat_use_hash_table <fact>
22580bad9183SKris Buschelman 
22590bad9183SKris Buschelman   Level: beginner
22600bad9183SKris Buschelman 
22610bad9183SKris Buschelman .seealso: MatCreateMPIBAIJ
22620bad9183SKris Buschelman M*/
22630bad9183SKris Buschelman 
226492b32695SKris Buschelman EXTERN_C_BEGIN
2265a23d5eceSKris Buschelman #undef __FUNCT__
22664a2ae208SSatish Balay #define __FUNCT__ "MatCreate_MPIBAIJ"
2267be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreate_MPIBAIJ(Mat B)
2268273d9f13SBarry Smith {
2269273d9f13SBarry Smith   Mat_MPIBAIJ    *b;
2270dfbe8321SBarry Smith   PetscErrorCode ierr;
2271273d9f13SBarry Smith   PetscTruth     flg;
2272273d9f13SBarry Smith 
2273273d9f13SBarry Smith   PetscFunctionBegin;
227482502324SSatish Balay   ierr = PetscNew(Mat_MPIBAIJ,&b);CHKERRQ(ierr);
227582502324SSatish Balay   B->data = (void*)b;
227682502324SSatish Balay 
2277085a36d4SBarry Smith 
2278273d9f13SBarry Smith   ierr    = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr);
2279273d9f13SBarry Smith   B->mapping    = 0;
2280273d9f13SBarry Smith   B->factor     = 0;
2281273d9f13SBarry Smith   B->assembled  = PETSC_FALSE;
2282273d9f13SBarry Smith 
2283273d9f13SBarry Smith   B->insertmode = NOT_SET_VALUES;
2284273d9f13SBarry Smith   ierr = MPI_Comm_rank(B->comm,&b->rank);CHKERRQ(ierr);
2285273d9f13SBarry Smith   ierr = MPI_Comm_size(B->comm,&b->size);CHKERRQ(ierr);
2286273d9f13SBarry Smith 
2287273d9f13SBarry Smith   /* build local table of row and column ownerships */
2288899cda47SBarry Smith   ierr = PetscMalloc((b->size+1)*sizeof(PetscInt),&b->rangebs);CHKERRQ(ierr);
2289273d9f13SBarry Smith 
2290273d9f13SBarry Smith   /* build cache for off array entries formed */
2291273d9f13SBarry Smith   ierr = MatStashCreate_Private(B->comm,1,&B->stash);CHKERRQ(ierr);
2292273d9f13SBarry Smith   b->donotstash  = PETSC_FALSE;
2293273d9f13SBarry Smith   b->colmap      = PETSC_NULL;
2294273d9f13SBarry Smith   b->garray      = PETSC_NULL;
2295273d9f13SBarry Smith   b->roworiented = PETSC_TRUE;
2296273d9f13SBarry Smith 
2297cfce73b9SSatish Balay #if defined(PETSC_USE_MAT_SINGLE)
2298273d9f13SBarry Smith   /* stuff for MatSetValues_XXX in single precision */
229964a35ccbSBarry Smith   b->setvalueslen     = 0;
2300273d9f13SBarry Smith   b->setvaluescopy    = PETSC_NULL;
2301273d9f13SBarry Smith #endif
2302273d9f13SBarry Smith 
2303273d9f13SBarry Smith   /* stuff used in block assembly */
2304273d9f13SBarry Smith   b->barray       = 0;
2305273d9f13SBarry Smith 
2306273d9f13SBarry Smith   /* stuff used for matrix vector multiply */
2307273d9f13SBarry Smith   b->lvec         = 0;
2308273d9f13SBarry Smith   b->Mvctx        = 0;
2309273d9f13SBarry Smith 
2310273d9f13SBarry Smith   /* stuff for MatGetRow() */
2311273d9f13SBarry Smith   b->rowindices   = 0;
2312273d9f13SBarry Smith   b->rowvalues    = 0;
2313273d9f13SBarry Smith   b->getrowactive = PETSC_FALSE;
2314273d9f13SBarry Smith 
2315273d9f13SBarry Smith   /* hash table stuff */
2316273d9f13SBarry Smith   b->ht           = 0;
2317273d9f13SBarry Smith   b->hd           = 0;
2318273d9f13SBarry Smith   b->ht_size      = 0;
2319273d9f13SBarry Smith   b->ht_flag      = PETSC_FALSE;
2320273d9f13SBarry Smith   b->ht_fact      = 0;
2321273d9f13SBarry Smith   b->ht_total_ct  = 0;
2322273d9f13SBarry Smith   b->ht_insert_ct = 0;
2323273d9f13SBarry Smith 
2324*8c07d4e3SBarry Smith   ierr = PetscOptionsBegin(B->comm,PETSC_NULL,"Options for loading MPIBAIJ matrix","Mat");CHKERRQ(ierr);
2325*8c07d4e3SBarry Smith     ierr = PetscOptionsTruth("-mat_use_hash_table","Use hash table to save memory in constructing matrix","MatSetOption",PETSC_FALSE,&flg,PETSC_NULL);CHKERRQ(ierr);
2326273d9f13SBarry Smith     if (flg) {
2327f6275e2eSBarry Smith       PetscReal fact = 1.39;
2328273d9f13SBarry Smith       ierr = MatSetOption(B,MAT_USE_HASH_TABLE);CHKERRQ(ierr);
2329*8c07d4e3SBarry Smith       ierr = PetscOptionsReal("-mat_use_hash_table","Use hash table factor","MatMPIBAIJSetHashTableFactor",fact,&fact,PETSC_NULL);CHKERRQ(ierr);
2330273d9f13SBarry Smith       if (fact <= 1.0) fact = 1.39;
2331273d9f13SBarry Smith       ierr = MatMPIBAIJSetHashTableFactor(B,fact);CHKERRQ(ierr);
2332ae15b995SBarry Smith       ierr = PetscInfo1(0,"Hash table Factor used %5.2f\n",fact);CHKERRQ(ierr);
2333273d9f13SBarry Smith     }
2334*8c07d4e3SBarry Smith   ierr = PetscOptionsEnd();CHKERRQ(ierr);
2335*8c07d4e3SBarry Smith 
2336273d9f13SBarry Smith   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatStoreValues_C",
2337273d9f13SBarry Smith                                      "MatStoreValues_MPIBAIJ",
2338273d9f13SBarry Smith                                      MatStoreValues_MPIBAIJ);CHKERRQ(ierr);
2339273d9f13SBarry Smith   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatRetrieveValues_C",
2340273d9f13SBarry Smith                                      "MatRetrieveValues_MPIBAIJ",
2341273d9f13SBarry Smith                                      MatRetrieveValues_MPIBAIJ);CHKERRQ(ierr);
2342273d9f13SBarry Smith   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetDiagonalBlock_C",
2343273d9f13SBarry Smith                                      "MatGetDiagonalBlock_MPIBAIJ",
2344273d9f13SBarry Smith                                      MatGetDiagonalBlock_MPIBAIJ);CHKERRQ(ierr);
2345a23d5eceSKris Buschelman   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatMPIBAIJSetPreallocation_C",
2346a23d5eceSKris Buschelman                                      "MatMPIBAIJSetPreallocation_MPIBAIJ",
2347a23d5eceSKris Buschelman                                      MatMPIBAIJSetPreallocation_MPIBAIJ);CHKERRQ(ierr);
2348aac34f13SBarry Smith   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatMPIBAIJSetPreallocationCSR_C",
2349aac34f13SBarry Smith 				     "MatMPIBAIJSetPreallocationCSR_MPIAIJ",
2350aac34f13SBarry Smith 				     MatMPIBAIJSetPreallocationCSR_MPIBAIJ);CHKERRQ(ierr);
235192b32695SKris Buschelman   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatDiagonalScaleLocal_C",
235292b32695SKris Buschelman                                      "MatDiagonalScaleLocal_MPIBAIJ",
235392b32695SKris Buschelman                                      MatDiagonalScaleLocal_MPIBAIJ);CHKERRQ(ierr);
23545bf65638SKris Buschelman   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatSetHashTableFactor_C",
23555bf65638SKris Buschelman                                      "MatSetHashTableFactor_MPIBAIJ",
23565bf65638SKris Buschelman                                      MatSetHashTableFactor_MPIBAIJ);CHKERRQ(ierr);
2357273d9f13SBarry Smith   PetscFunctionReturn(0);
2358273d9f13SBarry Smith }
2359273d9f13SBarry Smith EXTERN_C_END
2360273d9f13SBarry Smith 
2361209238afSKris Buschelman /*MC
2362002d173eSKris Buschelman    MATBAIJ - MATBAIJ = "baij" - A matrix type to be used for block sparse matrices.
2363209238afSKris Buschelman 
2364209238afSKris Buschelman    This matrix type is identical to MATSEQBAIJ when constructed with a single process communicator,
2365209238afSKris Buschelman    and MATMPIBAIJ otherwise.
2366209238afSKris Buschelman 
2367209238afSKris Buschelman    Options Database Keys:
2368209238afSKris Buschelman . -mat_type baij - sets the matrix type to "baij" during a call to MatSetFromOptions()
2369209238afSKris Buschelman 
2370209238afSKris Buschelman   Level: beginner
2371209238afSKris Buschelman 
2372aac34f13SBarry Smith .seealso: MatCreateMPIBAIJ(),MATSEQBAIJ,MATMPIBAIJ, MatMPIBAIJSetPreallocation(), MatMPIBAIJSetPreallocationCSR()
2373209238afSKris Buschelman M*/
2374209238afSKris Buschelman 
2375209238afSKris Buschelman EXTERN_C_BEGIN
2376209238afSKris Buschelman #undef __FUNCT__
2377209238afSKris Buschelman #define __FUNCT__ "MatCreate_BAIJ"
2378be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreate_BAIJ(Mat A)
2379dfbe8321SBarry Smith {
23806849ba73SBarry Smith   PetscErrorCode ierr;
2381b24ad042SBarry Smith   PetscMPIInt    size;
2382209238afSKris Buschelman 
2383209238afSKris Buschelman   PetscFunctionBegin;
2384209238afSKris Buschelman   ierr = PetscObjectChangeTypeName((PetscObject)A,MATBAIJ);CHKERRQ(ierr);
2385209238afSKris Buschelman   ierr = MPI_Comm_size(A->comm,&size);CHKERRQ(ierr);
2386209238afSKris Buschelman   if (size == 1) {
2387209238afSKris Buschelman     ierr = MatSetType(A,MATSEQBAIJ);CHKERRQ(ierr);
2388209238afSKris Buschelman   } else {
2389209238afSKris Buschelman     ierr = MatSetType(A,MATMPIBAIJ);CHKERRQ(ierr);
2390209238afSKris Buschelman   }
2391209238afSKris Buschelman   PetscFunctionReturn(0);
2392209238afSKris Buschelman }
2393209238afSKris Buschelman EXTERN_C_END
2394209238afSKris Buschelman 
23954a2ae208SSatish Balay #undef __FUNCT__
23964a2ae208SSatish Balay #define __FUNCT__ "MatMPIBAIJSetPreallocation"
2397273d9f13SBarry Smith /*@C
2398aac34f13SBarry Smith    MatMPIBAIJSetPreallocation - Allocates memory for a sparse parallel matrix in block AIJ format
2399273d9f13SBarry Smith    (block compressed row).  For good matrix assembly performance
2400273d9f13SBarry Smith    the user should preallocate the matrix storage by setting the parameters
2401273d9f13SBarry Smith    d_nz (or d_nnz) and o_nz (or o_nnz).  By setting these parameters accurately,
2402273d9f13SBarry Smith    performance can be increased by more than a factor of 50.
2403273d9f13SBarry Smith 
2404273d9f13SBarry Smith    Collective on Mat
2405273d9f13SBarry Smith 
2406273d9f13SBarry Smith    Input Parameters:
2407273d9f13SBarry Smith +  A - the matrix
2408273d9f13SBarry Smith .  bs   - size of blockk
2409273d9f13SBarry Smith .  d_nz  - number of block nonzeros per block row in diagonal portion of local
2410273d9f13SBarry Smith            submatrix  (same for all local rows)
2411273d9f13SBarry Smith .  d_nnz - array containing the number of block nonzeros in the various block rows
2412273d9f13SBarry Smith            of the in diagonal portion of the local (possibly different for each block
2413273d9f13SBarry Smith            row) or PETSC_NULL.  You must leave room for the diagonal entry even if it is zero.
2414273d9f13SBarry Smith .  o_nz  - number of block nonzeros per block row in the off-diagonal portion of local
2415273d9f13SBarry Smith            submatrix (same for all local rows).
2416273d9f13SBarry Smith -  o_nnz - array containing the number of nonzeros in the various block rows of the
2417273d9f13SBarry Smith            off-diagonal portion of the local submatrix (possibly different for
2418273d9f13SBarry Smith            each block row) or PETSC_NULL.
2419273d9f13SBarry Smith 
242049a6f317SBarry Smith    If the *_nnz parameter is given then the *_nz parameter is ignored
2421273d9f13SBarry Smith 
2422273d9f13SBarry Smith    Options Database Keys:
2423*8c07d4e3SBarry Smith +   -mat_block_size - size of the blocks to use
2424*8c07d4e3SBarry Smith -   -mat_use_hash_table <fact>
2425273d9f13SBarry Smith 
2426273d9f13SBarry Smith    Notes:
2427273d9f13SBarry Smith    If PETSC_DECIDE or  PETSC_DETERMINE is used for a particular argument on one processor
2428273d9f13SBarry Smith    than it must be used on all processors that share the object for that argument.
2429273d9f13SBarry Smith 
2430273d9f13SBarry Smith    Storage Information:
2431273d9f13SBarry Smith    For a square global matrix we define each processor's diagonal portion
2432273d9f13SBarry Smith    to be its local rows and the corresponding columns (a square submatrix);
2433273d9f13SBarry Smith    each processor's off-diagonal portion encompasses the remainder of the
2434273d9f13SBarry Smith    local matrix (a rectangular submatrix).
2435273d9f13SBarry Smith 
2436273d9f13SBarry Smith    The user can specify preallocated storage for the diagonal part of
2437273d9f13SBarry Smith    the local submatrix with either d_nz or d_nnz (not both).  Set
2438273d9f13SBarry Smith    d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic
2439273d9f13SBarry Smith    memory allocation.  Likewise, specify preallocated storage for the
2440273d9f13SBarry Smith    off-diagonal part of the local submatrix with o_nz or o_nnz (not both).
2441273d9f13SBarry Smith 
2442273d9f13SBarry Smith    Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
2443273d9f13SBarry Smith    the figure below we depict these three local rows and all columns (0-11).
2444273d9f13SBarry Smith 
2445273d9f13SBarry Smith .vb
2446273d9f13SBarry Smith            0 1 2 3 4 5 6 7 8 9 10 11
2447273d9f13SBarry Smith           -------------------
2448273d9f13SBarry Smith    row 3  |  o o o d d d o o o o o o
2449273d9f13SBarry Smith    row 4  |  o o o d d d o o o o o o
2450273d9f13SBarry Smith    row 5  |  o o o d d d o o o o o o
2451273d9f13SBarry Smith           -------------------
2452273d9f13SBarry Smith .ve
2453273d9f13SBarry Smith 
2454273d9f13SBarry Smith    Thus, any entries in the d locations are stored in the d (diagonal)
2455273d9f13SBarry Smith    submatrix, and any entries in the o locations are stored in the
2456273d9f13SBarry Smith    o (off-diagonal) submatrix.  Note that the d and the o submatrices are
2457273d9f13SBarry Smith    stored simply in the MATSEQBAIJ format for compressed row storage.
2458273d9f13SBarry Smith 
2459273d9f13SBarry Smith    Now d_nz should indicate the number of block nonzeros per row in the d matrix,
2460273d9f13SBarry Smith    and o_nz should indicate the number of block nonzeros per row in the o matrix.
2461273d9f13SBarry Smith    In general, for PDE problems in which most nonzeros are near the diagonal,
2462273d9f13SBarry Smith    one expects d_nz >> o_nz.   For large problems you MUST preallocate memory
2463273d9f13SBarry Smith    or you will get TERRIBLE performance; see the users' manual chapter on
2464273d9f13SBarry Smith    matrices.
2465273d9f13SBarry Smith 
2466273d9f13SBarry Smith    Level: intermediate
2467273d9f13SBarry Smith 
2468273d9f13SBarry Smith .keywords: matrix, block, aij, compressed row, sparse, parallel
2469273d9f13SBarry Smith 
2470aac34f13SBarry Smith .seealso: MatCreate(), MatCreateSeqBAIJ(), MatSetValues(), MatCreateMPIBAIJ(), MatMPIBAIJSetPreallocationCSR()
2471273d9f13SBarry Smith @*/
2472be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPIBAIJSetPreallocation(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[])
2473273d9f13SBarry Smith {
2474b24ad042SBarry Smith   PetscErrorCode ierr,(*f)(Mat,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[]);
2475273d9f13SBarry Smith 
2476273d9f13SBarry Smith   PetscFunctionBegin;
2477a23d5eceSKris Buschelman   ierr = PetscObjectQueryFunction((PetscObject)B,"MatMPIBAIJSetPreallocation_C",(void (**)(void))&f);CHKERRQ(ierr);
2478a23d5eceSKris Buschelman   if (f) {
2479a23d5eceSKris Buschelman     ierr = (*f)(B,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr);
2480273d9f13SBarry Smith   }
2481273d9f13SBarry Smith   PetscFunctionReturn(0);
2482273d9f13SBarry Smith }
2483273d9f13SBarry Smith 
24844a2ae208SSatish Balay #undef __FUNCT__
24854a2ae208SSatish Balay #define __FUNCT__ "MatCreateMPIBAIJ"
248679bdfe76SSatish Balay /*@C
248779bdfe76SSatish Balay    MatCreateMPIBAIJ - Creates a sparse parallel matrix in block AIJ format
248879bdfe76SSatish Balay    (block compressed row).  For good matrix assembly performance
248979bdfe76SSatish Balay    the user should preallocate the matrix storage by setting the parameters
249079bdfe76SSatish Balay    d_nz (or d_nnz) and o_nz (or o_nnz).  By setting these parameters accurately,
249179bdfe76SSatish Balay    performance can be increased by more than a factor of 50.
249279bdfe76SSatish Balay 
2493db81eaa0SLois Curfman McInnes    Collective on MPI_Comm
2494db81eaa0SLois Curfman McInnes 
249579bdfe76SSatish Balay    Input Parameters:
2496db81eaa0SLois Curfman McInnes +  comm - MPI communicator
249779bdfe76SSatish Balay .  bs   - size of blockk
249879bdfe76SSatish Balay .  m - number of local rows (or PETSC_DECIDE to have calculated if M is given)
249992e8d321SLois Curfman McInnes            This value should be the same as the local size used in creating the
250092e8d321SLois Curfman McInnes            y vector for the matrix-vector product y = Ax.
250192e8d321SLois Curfman McInnes .  n - number of local columns (or PETSC_DECIDE to have calculated if N is given)
250292e8d321SLois Curfman McInnes            This value should be the same as the local size used in creating the
250392e8d321SLois Curfman McInnes            x vector for the matrix-vector product y = Ax.
2504be79a94dSBarry Smith .  M - number of global rows (or PETSC_DETERMINE to have calculated if m is given)
2505be79a94dSBarry Smith .  N - number of global columns (or PETSC_DETERMINE to have calculated if n is given)
250647a75d0bSBarry Smith .  d_nz  - number of nonzero blocks per block row in diagonal portion of local
250779bdfe76SSatish Balay            submatrix  (same for all local rows)
250847a75d0bSBarry Smith .  d_nnz - array containing the number of nonzero blocks in the various block rows
250992e8d321SLois Curfman McInnes            of the in diagonal portion of the local (possibly different for each block
2510db81eaa0SLois Curfman McInnes            row) or PETSC_NULL.  You must leave room for the diagonal entry even if it is zero.
251147a75d0bSBarry Smith .  o_nz  - number of nonzero blocks per block row in the off-diagonal portion of local
251279bdfe76SSatish Balay            submatrix (same for all local rows).
251347a75d0bSBarry Smith -  o_nnz - array containing the number of nonzero blocks in the various block rows of the
251492e8d321SLois Curfman McInnes            off-diagonal portion of the local submatrix (possibly different for
251592e8d321SLois Curfman McInnes            each block row) or PETSC_NULL.
251679bdfe76SSatish Balay 
251779bdfe76SSatish Balay    Output Parameter:
251879bdfe76SSatish Balay .  A - the matrix
251979bdfe76SSatish Balay 
2520db81eaa0SLois Curfman McInnes    Options Database Keys:
2521*8c07d4e3SBarry Smith +   -mat_block_size - size of the blocks to use
2522*8c07d4e3SBarry Smith -   -mat_use_hash_table <fact>
25233ffaccefSLois Curfman McInnes 
2524b259b22eSLois Curfman McInnes    Notes:
252549a6f317SBarry Smith    If the *_nnz parameter is given then the *_nz parameter is ignored
252649a6f317SBarry Smith 
252747a75d0bSBarry Smith    A nonzero block is any block that as 1 or more nonzeros in it
252847a75d0bSBarry Smith 
252979bdfe76SSatish Balay    The user MUST specify either the local or global matrix dimensions
253079bdfe76SSatish Balay    (possibly both).
253179bdfe76SSatish Balay 
2532be79a94dSBarry Smith    If PETSC_DECIDE or  PETSC_DETERMINE is used for a particular argument on one processor
2533be79a94dSBarry Smith    than it must be used on all processors that share the object for that argument.
2534be79a94dSBarry Smith 
253579bdfe76SSatish Balay    Storage Information:
253679bdfe76SSatish Balay    For a square global matrix we define each processor's diagonal portion
253779bdfe76SSatish Balay    to be its local rows and the corresponding columns (a square submatrix);
253879bdfe76SSatish Balay    each processor's off-diagonal portion encompasses the remainder of the
253979bdfe76SSatish Balay    local matrix (a rectangular submatrix).
254079bdfe76SSatish Balay 
254179bdfe76SSatish Balay    The user can specify preallocated storage for the diagonal part of
254279bdfe76SSatish Balay    the local submatrix with either d_nz or d_nnz (not both).  Set
254379bdfe76SSatish Balay    d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic
254479bdfe76SSatish Balay    memory allocation.  Likewise, specify preallocated storage for the
254579bdfe76SSatish Balay    off-diagonal part of the local submatrix with o_nz or o_nnz (not both).
254679bdfe76SSatish Balay 
254779bdfe76SSatish Balay    Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
254879bdfe76SSatish Balay    the figure below we depict these three local rows and all columns (0-11).
254979bdfe76SSatish Balay 
2550db81eaa0SLois Curfman McInnes .vb
2551db81eaa0SLois Curfman McInnes            0 1 2 3 4 5 6 7 8 9 10 11
2552db81eaa0SLois Curfman McInnes           -------------------
2553db81eaa0SLois Curfman McInnes    row 3  |  o o o d d d o o o o o o
2554db81eaa0SLois Curfman McInnes    row 4  |  o o o d d d o o o o o o
2555db81eaa0SLois Curfman McInnes    row 5  |  o o o d d d o o o o o o
2556db81eaa0SLois Curfman McInnes           -------------------
2557db81eaa0SLois Curfman McInnes .ve
255879bdfe76SSatish Balay 
255979bdfe76SSatish Balay    Thus, any entries in the d locations are stored in the d (diagonal)
256079bdfe76SSatish Balay    submatrix, and any entries in the o locations are stored in the
256179bdfe76SSatish Balay    o (off-diagonal) submatrix.  Note that the d and the o submatrices are
256257b952d6SSatish Balay    stored simply in the MATSEQBAIJ format for compressed row storage.
256379bdfe76SSatish Balay 
2564d64ed03dSBarry Smith    Now d_nz should indicate the number of block nonzeros per row in the d matrix,
2565d64ed03dSBarry Smith    and o_nz should indicate the number of block nonzeros per row in the o matrix.
256679bdfe76SSatish Balay    In general, for PDE problems in which most nonzeros are near the diagonal,
256792e8d321SLois Curfman McInnes    one expects d_nz >> o_nz.   For large problems you MUST preallocate memory
256892e8d321SLois Curfman McInnes    or you will get TERRIBLE performance; see the users' manual chapter on
25696da5968aSLois Curfman McInnes    matrices.
257079bdfe76SSatish Balay 
2571027ccd11SLois Curfman McInnes    Level: intermediate
2572027ccd11SLois Curfman McInnes 
257392e8d321SLois Curfman McInnes .keywords: matrix, block, aij, compressed row, sparse, parallel
257479bdfe76SSatish Balay 
2575aac34f13SBarry Smith .seealso: MatCreate(), MatCreateSeqBAIJ(), MatSetValues(), MatCreateMPIBAIJ(), MatMPIBAIJSetPreallocation(), MatMPIBAIJSetPreallocationCSR()
257679bdfe76SSatish Balay @*/
2577be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreateMPIBAIJ(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[],Mat *A)
257879bdfe76SSatish Balay {
25796849ba73SBarry Smith   PetscErrorCode ierr;
2580b24ad042SBarry Smith   PetscMPIInt    size;
258179bdfe76SSatish Balay 
2582d64ed03dSBarry Smith   PetscFunctionBegin;
2583f69a0ea3SMatthew Knepley   ierr = MatCreate(comm,A);CHKERRQ(ierr);
2584f69a0ea3SMatthew Knepley   ierr = MatSetSizes(*A,m,n,M,N);CHKERRQ(ierr);
2585d132466eSBarry Smith   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
2586273d9f13SBarry Smith   if (size > 1) {
2587273d9f13SBarry Smith     ierr = MatSetType(*A,MATMPIBAIJ);CHKERRQ(ierr);
2588273d9f13SBarry Smith     ierr = MatMPIBAIJSetPreallocation(*A,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr);
2589273d9f13SBarry Smith   } else {
2590273d9f13SBarry Smith     ierr = MatSetType(*A,MATSEQBAIJ);CHKERRQ(ierr);
2591273d9f13SBarry Smith     ierr = MatSeqBAIJSetPreallocation(*A,bs,d_nz,d_nnz);CHKERRQ(ierr);
25923914022bSBarry Smith   }
25933a40ed3dSBarry Smith   PetscFunctionReturn(0);
259479bdfe76SSatish Balay }
2595026e39d0SSatish Balay 
25964a2ae208SSatish Balay #undef __FUNCT__
25974a2ae208SSatish Balay #define __FUNCT__ "MatDuplicate_MPIBAIJ"
25986849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIBAIJ(Mat matin,MatDuplicateOption cpvalues,Mat *newmat)
25990ac07820SSatish Balay {
26000ac07820SSatish Balay   Mat            mat;
26010ac07820SSatish Balay   Mat_MPIBAIJ    *a,*oldmat = (Mat_MPIBAIJ*)matin->data;
2602dfbe8321SBarry Smith   PetscErrorCode ierr;
2603b24ad042SBarry Smith   PetscInt       len=0;
26040ac07820SSatish Balay 
2605d64ed03dSBarry Smith   PetscFunctionBegin;
26060ac07820SSatish Balay   *newmat       = 0;
2607f69a0ea3SMatthew Knepley   ierr = MatCreate(matin->comm,&mat);CHKERRQ(ierr);
2608899cda47SBarry Smith   ierr = MatSetSizes(mat,matin->rmap.n,matin->cmap.n,matin->rmap.N,matin->cmap.N);CHKERRQ(ierr);
2609be5d1d56SKris Buschelman   ierr = MatSetType(mat,matin->type_name);CHKERRQ(ierr);
26101d5dac46SHong Zhang   ierr = PetscMemcpy(mat->ops,matin->ops,sizeof(struct _MatOps));CHKERRQ(ierr);
26117fff6886SHong Zhang 
26124beb1cfeSHong Zhang   mat->factor       = matin->factor;
2613273d9f13SBarry Smith   mat->preallocated = PETSC_TRUE;
26140ac07820SSatish Balay   mat->assembled    = PETSC_TRUE;
26157fff6886SHong Zhang   mat->insertmode   = NOT_SET_VALUES;
26167fff6886SHong Zhang 
2617273d9f13SBarry Smith   a      = (Mat_MPIBAIJ*)mat->data;
2618899cda47SBarry Smith   mat->rmap.bs  = matin->rmap.bs;
26190ac07820SSatish Balay   a->bs2   = oldmat->bs2;
26200ac07820SSatish Balay   a->mbs   = oldmat->mbs;
26210ac07820SSatish Balay   a->nbs   = oldmat->nbs;
26220ac07820SSatish Balay   a->Mbs   = oldmat->Mbs;
26230ac07820SSatish Balay   a->Nbs   = oldmat->Nbs;
26240ac07820SSatish Balay 
2625899cda47SBarry Smith   ierr = PetscMapCopy(matin->comm,&matin->rmap,&mat->rmap);CHKERRQ(ierr);
2626899cda47SBarry Smith   ierr = PetscMapCopy(matin->comm,&matin->cmap,&mat->cmap);CHKERRQ(ierr);
2627899cda47SBarry Smith 
26280ac07820SSatish Balay   a->size         = oldmat->size;
26290ac07820SSatish Balay   a->rank         = oldmat->rank;
2630aef5e8e0SSatish Balay   a->donotstash   = oldmat->donotstash;
2631aef5e8e0SSatish Balay   a->roworiented  = oldmat->roworiented;
2632aef5e8e0SSatish Balay   a->rowindices   = 0;
26330ac07820SSatish Balay   a->rowvalues    = 0;
26340ac07820SSatish Balay   a->getrowactive = PETSC_FALSE;
263530793edcSSatish Balay   a->barray       = 0;
2636899cda47SBarry Smith   a->rstartbs     = oldmat->rstartbs;
2637899cda47SBarry Smith   a->rendbs       = oldmat->rendbs;
2638899cda47SBarry Smith   a->cstartbs     = oldmat->cstartbs;
2639899cda47SBarry Smith   a->cendbs       = oldmat->cendbs;
26400ac07820SSatish Balay 
2641133cdb44SSatish Balay   /* hash table stuff */
2642133cdb44SSatish Balay   a->ht           = 0;
2643133cdb44SSatish Balay   a->hd           = 0;
2644133cdb44SSatish Balay   a->ht_size      = 0;
2645133cdb44SSatish Balay   a->ht_flag      = oldmat->ht_flag;
264625fdafccSSatish Balay   a->ht_fact      = oldmat->ht_fact;
2647133cdb44SSatish Balay   a->ht_total_ct  = 0;
2648133cdb44SSatish Balay   a->ht_insert_ct = 0;
2649133cdb44SSatish Balay 
2650899cda47SBarry Smith   ierr = PetscMemcpy(a->rangebs,oldmat->rangebs,(a->size+1)*sizeof(PetscInt));CHKERRQ(ierr);
26518798bf22SSatish Balay   ierr = MatStashCreate_Private(matin->comm,1,&mat->stash);CHKERRQ(ierr);
2652899cda47SBarry Smith   ierr = MatStashCreate_Private(matin->comm,matin->rmap.bs,&mat->bstash);CHKERRQ(ierr);
26530ac07820SSatish Balay   if (oldmat->colmap) {
2654aa482453SBarry Smith #if defined (PETSC_USE_CTABLE)
26550f5bd95cSBarry Smith   ierr = PetscTableCreateCopy(oldmat->colmap,&a->colmap);CHKERRQ(ierr);
265648e59246SSatish Balay #else
2657b24ad042SBarry Smith   ierr = PetscMalloc((a->Nbs)*sizeof(PetscInt),&a->colmap);CHKERRQ(ierr);
265852e6d16bSBarry Smith   ierr = PetscLogObjectMemory(mat,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr);
2659b24ad042SBarry Smith   ierr = PetscMemcpy(a->colmap,oldmat->colmap,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr);
266048e59246SSatish Balay #endif
26610ac07820SSatish Balay   } else a->colmap = 0;
26624beb1cfeSHong Zhang 
26630ac07820SSatish Balay   if (oldmat->garray && (len = ((Mat_SeqBAIJ*)(oldmat->B->data))->nbs)) {
2664b24ad042SBarry Smith     ierr = PetscMalloc(len*sizeof(PetscInt),&a->garray);CHKERRQ(ierr);
266552e6d16bSBarry Smith     ierr = PetscLogObjectMemory(mat,len*sizeof(PetscInt));CHKERRQ(ierr);
2666b24ad042SBarry Smith     ierr = PetscMemcpy(a->garray,oldmat->garray,len*sizeof(PetscInt));CHKERRQ(ierr);
26670ac07820SSatish Balay   } else a->garray = 0;
26680ac07820SSatish Balay 
26690ac07820SSatish Balay   ierr = VecDuplicate(oldmat->lvec,&a->lvec);CHKERRQ(ierr);
267052e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->lvec);CHKERRQ(ierr);
26710ac07820SSatish Balay   ierr = VecScatterCopy(oldmat->Mvctx,&a->Mvctx);CHKERRQ(ierr);
267252e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->Mvctx);CHKERRQ(ierr);
26737fff6886SHong Zhang 
26742e8a6d31SBarry Smith   ierr =  MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr);
267552e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->A);CHKERRQ(ierr);
26762e8a6d31SBarry Smith   ierr =  MatDuplicate(oldmat->B,cpvalues,&a->B);CHKERRQ(ierr);
267752e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->B);CHKERRQ(ierr);
2678b0a32e0cSBarry Smith   ierr = PetscFListDuplicate(matin->qlist,&mat->qlist);CHKERRQ(ierr);
26790ac07820SSatish Balay   *newmat = mat;
26804beb1cfeSHong Zhang 
26813a40ed3dSBarry Smith   PetscFunctionReturn(0);
26820ac07820SSatish Balay }
268357b952d6SSatish Balay 
2684e090d566SSatish Balay #include "petscsys.h"
268557b952d6SSatish Balay 
26864a2ae208SSatish Balay #undef __FUNCT__
26874a2ae208SSatish Balay #define __FUNCT__ "MatLoad_MPIBAIJ"
2688f69a0ea3SMatthew Knepley PetscErrorCode MatLoad_MPIBAIJ(PetscViewer viewer, MatType type,Mat *newmat)
268957b952d6SSatish Balay {
269057b952d6SSatish Balay   Mat            A;
26916849ba73SBarry Smith   PetscErrorCode ierr;
2692b24ad042SBarry Smith   int            fd;
2693b24ad042SBarry Smith   PetscInt       i,nz,j,rstart,rend;
269487828ca2SBarry Smith   PetscScalar    *vals,*buf;
269557b952d6SSatish Balay   MPI_Comm       comm = ((PetscObject)viewer)->comm;
269657b952d6SSatish Balay   MPI_Status     status;
2697b24ad042SBarry Smith   PetscMPIInt    rank,size,maxnz;
2698b24ad042SBarry Smith   PetscInt       header[4],*rowlengths = 0,M,N,m,*rowners,*cols;
2699910ba992SMatthew Knepley   PetscInt       *locrowlens = PETSC_NULL,*procsnz = PETSC_NULL,*browners = PETSC_NULL;
2700167e7480SBarry Smith   PetscInt       jj,*mycols,*ibuf,bs=1,Mbs,mbs,extra_rows,mmax;
2701dc231df0SBarry Smith   PetscMPIInt    tag = ((PetscObject)viewer)->tag;
2702910ba992SMatthew Knepley   PetscInt       *dlens = PETSC_NULL,*odlens = PETSC_NULL,*mask = PETSC_NULL,*masked1 = PETSC_NULL,*masked2 = PETSC_NULL,rowcount,odcount;
2703dc231df0SBarry Smith   PetscInt       dcount,kmax,k,nzcount,tmp,mend;
270457b952d6SSatish Balay 
2705d64ed03dSBarry Smith   PetscFunctionBegin;
2706*8c07d4e3SBarry Smith   ierr = PetscOptionsBegin(comm,PETSC_NULL,"Options for loading MPIBAIJ matrix","Mat");CHKERRQ(ierr);
2707*8c07d4e3SBarry Smith     ierr = PetscOptionsInt("-matload_block_size","Set the blocksize used to store the matrix","MatLoad",bs,&bs,PETSC_NULL);CHKERRQ(ierr);
2708*8c07d4e3SBarry Smith   ierr = PetscOptionsEnd();CHKERRQ(ierr);
270957b952d6SSatish Balay 
2710d132466eSBarry Smith   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
2711d132466eSBarry Smith   ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr);
271257b952d6SSatish Balay   if (!rank) {
2713b0a32e0cSBarry Smith     ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr);
2714e5638eb3SBarry Smith     ierr = PetscBinaryRead(fd,(char *)header,4,PETSC_INT);CHKERRQ(ierr);
2715552e946dSBarry Smith     if (header[0] != MAT_FILE_COOKIE) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"not matrix object");
27166c5fab8fSBarry Smith   }
2717d64ed03dSBarry Smith 
2718b24ad042SBarry Smith   ierr = MPI_Bcast(header+1,3,MPIU_INT,0,comm);CHKERRQ(ierr);
271957b952d6SSatish Balay   M = header[1]; N = header[2];
272057b952d6SSatish Balay 
272129bbc08cSBarry Smith   if (M != N) SETERRQ(PETSC_ERR_SUP,"Can only do square matrices");
272257b952d6SSatish Balay 
272357b952d6SSatish Balay   /*
272457b952d6SSatish Balay      This code adds extra rows to make sure the number of rows is
272557b952d6SSatish Balay      divisible by the blocksize
272657b952d6SSatish Balay   */
272757b952d6SSatish Balay   Mbs        = M/bs;
2728dc231df0SBarry Smith   extra_rows = bs - M + bs*Mbs;
272957b952d6SSatish Balay   if (extra_rows == bs) extra_rows = 0;
273057b952d6SSatish Balay   else                  Mbs++;
273157b952d6SSatish Balay   if (extra_rows && !rank) {
2732ae15b995SBarry Smith     ierr = PetscInfo(0,"Padding loaded matrix to match blocksize\n");CHKERRQ(ierr);
273357b952d6SSatish Balay   }
2734537820f0SBarry Smith 
273557b952d6SSatish Balay   /* determine ownership of all rows */
273657b952d6SSatish Balay   mbs        = Mbs/size + ((Mbs % size) > rank);
273757b952d6SSatish Balay   m          = mbs*bs;
2738dc231df0SBarry Smith   ierr       = PetscMalloc2(size+1,PetscInt,&rowners,size+1,PetscInt,&browners);CHKERRQ(ierr);
2739b24ad042SBarry Smith   ierr       = MPI_Allgather(&mbs,1,MPIU_INT,rowners+1,1,MPIU_INT,comm);CHKERRQ(ierr);
2740167e7480SBarry Smith 
2741167e7480SBarry Smith   /* process 0 needs enough room for process with most rows */
2742167e7480SBarry Smith   if (!rank) {
2743167e7480SBarry Smith     mmax = rowners[1];
2744167e7480SBarry Smith     for (i=2; i<size; i++) {
2745167e7480SBarry Smith       mmax = PetscMax(mmax,rowners[i]);
2746167e7480SBarry Smith     }
2747ca02efcfSSatish Balay     mmax*=bs;
2748167e7480SBarry Smith   } else mmax = m;
2749167e7480SBarry Smith 
275057b952d6SSatish Balay   rowners[0] = 0;
2751cee3aa6bSSatish Balay   for (i=2; i<=size; i++)  rowners[i] += rowners[i-1];
2752cee3aa6bSSatish Balay   for (i=0; i<=size;  i++) browners[i] = rowners[i]*bs;
275357b952d6SSatish Balay   rstart = rowners[rank];
275457b952d6SSatish Balay   rend   = rowners[rank+1];
275557b952d6SSatish Balay 
275657b952d6SSatish Balay   /* distribute row lengths to all processors */
275719c38ff2SBarry Smith   ierr = PetscMalloc((mmax+1)*sizeof(PetscInt),&locrowlens);CHKERRQ(ierr);
275857b952d6SSatish Balay   if (!rank) {
2759dc231df0SBarry Smith     mend = m;
2760dc231df0SBarry Smith     if (size == 1) mend = mend - extra_rows;
2761dc231df0SBarry Smith     ierr = PetscBinaryRead(fd,locrowlens,mend,PETSC_INT);CHKERRQ(ierr);
2762dc231df0SBarry Smith     for (j=mend; j<m; j++) locrowlens[j] = 1;
2763dc231df0SBarry Smith     ierr = PetscMalloc(m*sizeof(PetscInt),&rowlengths);CHKERRQ(ierr);
2764b24ad042SBarry Smith     ierr = PetscMalloc(size*sizeof(PetscInt),&procsnz);CHKERRQ(ierr);
2765b24ad042SBarry Smith     ierr = PetscMemzero(procsnz,size*sizeof(PetscInt));CHKERRQ(ierr);
2766dc231df0SBarry Smith     for (j=0; j<m; j++) {
2767dc231df0SBarry Smith       procsnz[0] += locrowlens[j];
2768dc231df0SBarry Smith     }
2769dc231df0SBarry Smith     for (i=1; i<size; i++) {
2770dc231df0SBarry Smith       mend = browners[i+1] - browners[i];
2771dc231df0SBarry Smith       if (i == size-1) mend = mend - extra_rows;
2772dc231df0SBarry Smith       ierr = PetscBinaryRead(fd,rowlengths,mend,PETSC_INT);CHKERRQ(ierr);
2773dc231df0SBarry Smith       for (j=mend; j<browners[i+1] - browners[i]; j++) rowlengths[j] = 1;
2774dc231df0SBarry Smith       /* calculate the number of nonzeros on each processor */
2775dc231df0SBarry Smith       for (j=0; j<browners[i+1]-browners[i]; j++) {
277657b952d6SSatish Balay         procsnz[i] += rowlengths[j];
277757b952d6SSatish Balay       }
2778dc231df0SBarry Smith       ierr = MPI_Send(rowlengths,browners[i+1]-browners[i],MPIU_INT,i,tag,comm);CHKERRQ(ierr);
277957b952d6SSatish Balay     }
2780606d414cSSatish Balay     ierr = PetscFree(rowlengths);CHKERRQ(ierr);
2781dc231df0SBarry Smith   } else {
2782dc231df0SBarry Smith     ierr = MPI_Recv(locrowlens,m,MPIU_INT,0,tag,comm,&status);CHKERRQ(ierr);
2783dc231df0SBarry Smith   }
278457b952d6SSatish Balay 
2785dc231df0SBarry Smith   if (!rank) {
278657b952d6SSatish Balay     /* determine max buffer needed and allocate it */
27878a8e0b3aSBarry Smith     maxnz = procsnz[0];
2788cdc0ba36SBarry Smith     for (i=1; i<size; i++) {
278957b952d6SSatish Balay       maxnz = PetscMax(maxnz,procsnz[i]);
279057b952d6SSatish Balay     }
2791b24ad042SBarry Smith     ierr = PetscMalloc(maxnz*sizeof(PetscInt),&cols);CHKERRQ(ierr);
279257b952d6SSatish Balay 
279357b952d6SSatish Balay     /* read in my part of the matrix column indices  */
279457b952d6SSatish Balay     nz     = procsnz[0];
279519c38ff2SBarry Smith     ierr   = PetscMalloc((nz+1)*sizeof(PetscInt),&ibuf);CHKERRQ(ierr);
279657b952d6SSatish Balay     mycols = ibuf;
2797cee3aa6bSSatish Balay     if (size == 1)  nz -= extra_rows;
2798e5638eb3SBarry Smith     ierr = PetscBinaryRead(fd,mycols,nz,PETSC_INT);CHKERRQ(ierr);
2799cee3aa6bSSatish Balay     if (size == 1)  for (i=0; i< extra_rows; i++) { mycols[nz+i] = M+i; }
2800cee3aa6bSSatish Balay 
280157b952d6SSatish Balay     /* read in every ones (except the last) and ship off */
280257b952d6SSatish Balay     for (i=1; i<size-1; i++) {
280357b952d6SSatish Balay       nz   = procsnz[i];
2804e5638eb3SBarry Smith       ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr);
2805b24ad042SBarry Smith       ierr = MPI_Send(cols,nz,MPIU_INT,i,tag,comm);CHKERRQ(ierr);
280657b952d6SSatish Balay     }
280757b952d6SSatish Balay     /* read in the stuff for the last proc */
280857b952d6SSatish Balay     if (size != 1) {
280957b952d6SSatish Balay       nz   = procsnz[size-1] - extra_rows;  /* the extra rows are not on the disk */
2810e5638eb3SBarry Smith       ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr);
281157b952d6SSatish Balay       for (i=0; i<extra_rows; i++) cols[nz+i] = M+i;
2812b24ad042SBarry Smith       ierr = MPI_Send(cols,nz+extra_rows,MPIU_INT,size-1,tag,comm);CHKERRQ(ierr);
281357b952d6SSatish Balay     }
2814606d414cSSatish Balay     ierr = PetscFree(cols);CHKERRQ(ierr);
2815d64ed03dSBarry Smith   } else {
281657b952d6SSatish Balay     /* determine buffer space needed for message */
281757b952d6SSatish Balay     nz = 0;
281857b952d6SSatish Balay     for (i=0; i<m; i++) {
281957b952d6SSatish Balay       nz += locrowlens[i];
282057b952d6SSatish Balay     }
282119c38ff2SBarry Smith     ierr   = PetscMalloc((nz+1)*sizeof(PetscInt),&ibuf);CHKERRQ(ierr);
282257b952d6SSatish Balay     mycols = ibuf;
282357b952d6SSatish Balay     /* receive message of column indices*/
2824b24ad042SBarry Smith     ierr = MPI_Recv(mycols,nz,MPIU_INT,0,tag,comm,&status);CHKERRQ(ierr);
2825b24ad042SBarry Smith     ierr = MPI_Get_count(&status,MPIU_INT,&maxnz);CHKERRQ(ierr);
282629bbc08cSBarry Smith     if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file");
282757b952d6SSatish Balay   }
282857b952d6SSatish Balay 
282957b952d6SSatish Balay   /* loop over local rows, determining number of off diagonal entries */
2830dc231df0SBarry Smith   ierr     = PetscMalloc2(rend-rstart,PetscInt,&dlens,rend-rstart,PetscInt,&odlens);CHKERRQ(ierr);
2831dc231df0SBarry Smith   ierr     = PetscMalloc3(Mbs,PetscInt,&mask,Mbs,PetscInt,&masked1,Mbs,PetscInt,&masked2);CHKERRQ(ierr);
2832dc231df0SBarry Smith   ierr     = PetscMemzero(mask,Mbs*sizeof(PetscInt));CHKERRQ(ierr);
2833dc231df0SBarry Smith   ierr     = PetscMemzero(masked1,Mbs*sizeof(PetscInt));CHKERRQ(ierr);
2834dc231df0SBarry Smith   ierr     = PetscMemzero(masked2,Mbs*sizeof(PetscInt));CHKERRQ(ierr);
283557b952d6SSatish Balay   rowcount = 0; nzcount = 0;
283657b952d6SSatish Balay   for (i=0; i<mbs; i++) {
283757b952d6SSatish Balay     dcount  = 0;
283857b952d6SSatish Balay     odcount = 0;
283957b952d6SSatish Balay     for (j=0; j<bs; j++) {
284057b952d6SSatish Balay       kmax = locrowlens[rowcount];
284157b952d6SSatish Balay       for (k=0; k<kmax; k++) {
284257b952d6SSatish Balay         tmp = mycols[nzcount++]/bs;
284357b952d6SSatish Balay         if (!mask[tmp]) {
284457b952d6SSatish Balay           mask[tmp] = 1;
284557b952d6SSatish Balay           if (tmp < rstart || tmp >= rend) masked2[odcount++] = tmp;
284657b952d6SSatish Balay           else masked1[dcount++] = tmp;
284757b952d6SSatish Balay         }
284857b952d6SSatish Balay       }
284957b952d6SSatish Balay       rowcount++;
285057b952d6SSatish Balay     }
2851cee3aa6bSSatish Balay 
285257b952d6SSatish Balay     dlens[i]  = dcount;
285357b952d6SSatish Balay     odlens[i] = odcount;
2854cee3aa6bSSatish Balay 
285557b952d6SSatish Balay     /* zero out the mask elements we set */
285657b952d6SSatish Balay     for (j=0; j<dcount; j++) mask[masked1[j]] = 0;
285757b952d6SSatish Balay     for (j=0; j<odcount; j++) mask[masked2[j]] = 0;
285857b952d6SSatish Balay   }
2859cee3aa6bSSatish Balay 
286057b952d6SSatish Balay   /* create our matrix */
2861f69a0ea3SMatthew Knepley   ierr = MatCreate(comm,&A);CHKERRQ(ierr);
2862f69a0ea3SMatthew Knepley   ierr = MatSetSizes(A,m,m,M+extra_rows,N+extra_rows);CHKERRQ(ierr);
286378ae41b4SKris Buschelman   ierr = MatSetType(A,type);CHKERRQ(ierr)
286478ae41b4SKris Buschelman   ierr = MatMPIBAIJSetPreallocation(A,bs,0,dlens,0,odlens);CHKERRQ(ierr);
286578ae41b4SKris Buschelman 
286678ae41b4SKris Buschelman   /* Why doesn't this called using ierr = MatSetOption(A,MAT_COLUMNS_SORTED);CHKERRQ(ierr); */
2867dc231df0SBarry Smith   ierr = MatSetOption(A,MAT_COLUMNS_SORTED);CHKERRQ(ierr);
286857b952d6SSatish Balay 
286957b952d6SSatish Balay   if (!rank) {
287019c38ff2SBarry Smith     ierr = PetscMalloc((maxnz+1)*sizeof(PetscScalar),&buf);CHKERRQ(ierr);
287157b952d6SSatish Balay     /* read in my part of the matrix numerical values  */
287257b952d6SSatish Balay     nz = procsnz[0];
287357b952d6SSatish Balay     vals = buf;
2874cee3aa6bSSatish Balay     mycols = ibuf;
2875cee3aa6bSSatish Balay     if (size == 1)  nz -= extra_rows;
2876e5638eb3SBarry Smith     ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
2877cee3aa6bSSatish Balay     if (size == 1)  for (i=0; i< extra_rows; i++) { vals[nz+i] = 1.0; }
2878537820f0SBarry Smith 
287957b952d6SSatish Balay     /* insert into matrix */
288057b952d6SSatish Balay     jj      = rstart*bs;
288157b952d6SSatish Balay     for (i=0; i<m; i++) {
2882dc231df0SBarry Smith       ierr = MatSetValues_MPIBAIJ(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr);
288357b952d6SSatish Balay       mycols += locrowlens[i];
288457b952d6SSatish Balay       vals   += locrowlens[i];
288557b952d6SSatish Balay       jj++;
288657b952d6SSatish Balay     }
288757b952d6SSatish Balay     /* read in other processors (except the last one) and ship out */
288857b952d6SSatish Balay     for (i=1; i<size-1; i++) {
288957b952d6SSatish Balay       nz   = procsnz[i];
289057b952d6SSatish Balay       vals = buf;
2891e5638eb3SBarry Smith       ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
2892ca161407SBarry Smith       ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,A->tag,comm);CHKERRQ(ierr);
289357b952d6SSatish Balay     }
289457b952d6SSatish Balay     /* the last proc */
289557b952d6SSatish Balay     if (size != 1){
289657b952d6SSatish Balay       nz   = procsnz[i] - extra_rows;
2897cee3aa6bSSatish Balay       vals = buf;
2898e5638eb3SBarry Smith       ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
289957b952d6SSatish Balay       for (i=0; i<extra_rows; i++) vals[nz+i] = 1.0;
2900ca161407SBarry Smith       ierr = MPI_Send(vals,nz+extra_rows,MPIU_SCALAR,size-1,A->tag,comm);CHKERRQ(ierr);
290157b952d6SSatish Balay     }
2902606d414cSSatish Balay     ierr = PetscFree(procsnz);CHKERRQ(ierr);
2903d64ed03dSBarry Smith   } else {
290457b952d6SSatish Balay     /* receive numeric values */
290519c38ff2SBarry Smith     ierr = PetscMalloc((nz+1)*sizeof(PetscScalar),&buf);CHKERRQ(ierr);
290657b952d6SSatish Balay 
290757b952d6SSatish Balay     /* receive message of values*/
290857b952d6SSatish Balay     vals   = buf;
2909cee3aa6bSSatish Balay     mycols = ibuf;
2910ca161407SBarry Smith     ierr   = MPI_Recv(vals,nz,MPIU_SCALAR,0,A->tag,comm,&status);CHKERRQ(ierr);
2911ca161407SBarry Smith     ierr   = MPI_Get_count(&status,MPIU_SCALAR,&maxnz);CHKERRQ(ierr);
291229bbc08cSBarry Smith     if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file");
291357b952d6SSatish Balay 
291457b952d6SSatish Balay     /* insert into matrix */
291557b952d6SSatish Balay     jj      = rstart*bs;
2916cee3aa6bSSatish Balay     for (i=0; i<m; i++) {
2917dc231df0SBarry Smith       ierr    = MatSetValues_MPIBAIJ(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr);
291857b952d6SSatish Balay       mycols += locrowlens[i];
291957b952d6SSatish Balay       vals   += locrowlens[i];
292057b952d6SSatish Balay       jj++;
292157b952d6SSatish Balay     }
292257b952d6SSatish Balay   }
2923606d414cSSatish Balay   ierr = PetscFree(locrowlens);CHKERRQ(ierr);
2924606d414cSSatish Balay   ierr = PetscFree(buf);CHKERRQ(ierr);
2925606d414cSSatish Balay   ierr = PetscFree(ibuf);CHKERRQ(ierr);
2926dc231df0SBarry Smith   ierr = PetscFree2(rowners,browners);CHKERRQ(ierr);
2927dc231df0SBarry Smith   ierr = PetscFree2(dlens,odlens);CHKERRQ(ierr);
2928dc231df0SBarry Smith   ierr = PetscFree3(mask,masked1,masked2);CHKERRQ(ierr);
29296d4a8577SBarry Smith   ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
29306d4a8577SBarry Smith   ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
293178ae41b4SKris Buschelman 
293278ae41b4SKris Buschelman   *newmat = A;
29333a40ed3dSBarry Smith   PetscFunctionReturn(0);
293457b952d6SSatish Balay }
293557b952d6SSatish Balay 
29364a2ae208SSatish Balay #undef __FUNCT__
29374a2ae208SSatish Balay #define __FUNCT__ "MatMPIBAIJSetHashTableFactor"
2938133cdb44SSatish Balay /*@
2939133cdb44SSatish Balay    MatMPIBAIJSetHashTableFactor - Sets the factor required to compute the size of the HashTable.
2940133cdb44SSatish Balay 
2941133cdb44SSatish Balay    Input Parameters:
2942133cdb44SSatish Balay .  mat  - the matrix
2943133cdb44SSatish Balay .  fact - factor
2944133cdb44SSatish Balay 
2945fee21e36SBarry Smith    Collective on Mat
2946fee21e36SBarry Smith 
29478c890885SBarry Smith    Level: advanced
29488c890885SBarry Smith 
2949133cdb44SSatish Balay   Notes:
2950*8c07d4e3SBarry Smith    This can also be set by the command line option: -mat_use_hash_table <fact>
2951133cdb44SSatish Balay 
2952133cdb44SSatish Balay .keywords: matrix, hashtable, factor, HT
2953133cdb44SSatish Balay 
2954133cdb44SSatish Balay .seealso: MatSetOption()
2955133cdb44SSatish Balay @*/
2956be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPIBAIJSetHashTableFactor(Mat mat,PetscReal fact)
2957133cdb44SSatish Balay {
2958dfbe8321SBarry Smith   PetscErrorCode ierr,(*f)(Mat,PetscReal);
29595bf65638SKris Buschelman 
29605bf65638SKris Buschelman   PetscFunctionBegin;
29615bf65638SKris Buschelman   ierr = PetscObjectQueryFunction((PetscObject)mat,"MatSetHashTableFactor_C",(void (**)(void))&f);CHKERRQ(ierr);
29625bf65638SKris Buschelman   if (f) {
29635bf65638SKris Buschelman     ierr = (*f)(mat,fact);CHKERRQ(ierr);
29645bf65638SKris Buschelman   }
29655bf65638SKris Buschelman   PetscFunctionReturn(0);
29665bf65638SKris Buschelman }
29675bf65638SKris Buschelman 
2968be1d678aSKris Buschelman EXTERN_C_BEGIN
29695bf65638SKris Buschelman #undef __FUNCT__
29705bf65638SKris Buschelman #define __FUNCT__ "MatSetHashTableFactor_MPIBAIJ"
2971be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatSetHashTableFactor_MPIBAIJ(Mat mat,PetscReal fact)
29725bf65638SKris Buschelman {
297325fdafccSSatish Balay   Mat_MPIBAIJ *baij;
2974133cdb44SSatish Balay 
2975133cdb44SSatish Balay   PetscFunctionBegin;
2976133cdb44SSatish Balay   baij = (Mat_MPIBAIJ*)mat->data;
2977133cdb44SSatish Balay   baij->ht_fact = fact;
2978133cdb44SSatish Balay   PetscFunctionReturn(0);
2979133cdb44SSatish Balay }
2980be1d678aSKris Buschelman EXTERN_C_END
2981f2a5309cSSatish Balay 
29824a2ae208SSatish Balay #undef __FUNCT__
29834a2ae208SSatish Balay #define __FUNCT__ "MatMPIBAIJGetSeqBAIJ"
2984be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPIBAIJGetSeqBAIJ(Mat A,Mat *Ad,Mat *Ao,PetscInt *colmap[])
2985f2a5309cSSatish Balay {
2986f2a5309cSSatish Balay   Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data;
2987f2a5309cSSatish Balay   PetscFunctionBegin;
2988f2a5309cSSatish Balay   *Ad     = a->A;
2989f2a5309cSSatish Balay   *Ao     = a->B;
2990195d93cdSBarry Smith   *colmap = a->garray;
2991f2a5309cSSatish Balay   PetscFunctionReturn(0);
2992f2a5309cSSatish Balay }
2993