1be1d678aSKris Buschelman #define PETSCMAT_DLL 279bdfe76SSatish Balay 3e090d566SSatish Balay #include "src/mat/impls/baij/mpi/mpibaij.h" /*I "petscmat.h" I*/ 479bdfe76SSatish Balay 5dfbe8321SBarry Smith EXTERN PetscErrorCode MatSetUpMultiply_MPIBAIJ(Mat); 6dfbe8321SBarry Smith EXTERN PetscErrorCode DisAssemble_MPIBAIJ(Mat); 7b24ad042SBarry Smith EXTERN PetscErrorCode MatIncreaseOverlap_MPIBAIJ(Mat,PetscInt,IS[],PetscInt); 8b24ad042SBarry Smith EXTERN PetscErrorCode MatGetSubMatrices_MPIBAIJ(Mat,PetscInt,const IS[],const IS[],MatReuse,Mat *[]); 9b24ad042SBarry Smith EXTERN PetscErrorCode MatGetValues_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt [],PetscScalar []); 10b24ad042SBarry Smith EXTERN PetscErrorCode MatSetValues_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt [],const PetscScalar [],InsertMode); 11b24ad042SBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode); 12b24ad042SBarry Smith EXTERN PetscErrorCode MatGetRow_SeqBAIJ(Mat,PetscInt,PetscInt*,PetscInt*[],PetscScalar*[]); 13b24ad042SBarry Smith EXTERN PetscErrorCode MatRestoreRow_SeqBAIJ(Mat,PetscInt,PetscInt*,PetscInt*[],PetscScalar*[]); 14f4df32b1SMatthew Knepley EXTERN PetscErrorCode MatZeroRows_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscScalar); 1593fea6afSBarry Smith 1693fea6afSBarry Smith /* UGLY, ugly, ugly 1787828ca2SBarry Smith When MatScalar == PetscScalar the function MatSetValuesBlocked_MPIBAIJ_MatScalar() does 1893fea6afSBarry Smith not exist. Otherwise ..._MatScalar() takes matrix elements in single precision and 1993fea6afSBarry Smith inserts them into the single precision data structure. The function MatSetValuesBlocked_MPIBAIJ() 2093fea6afSBarry Smith converts the entries into single precision and then calls ..._MatScalar() to put them 2193fea6afSBarry Smith into the single precision data structures. 2293fea6afSBarry Smith */ 2393fea6afSBarry Smith #if defined(PETSC_USE_MAT_SINGLE) 24b24ad042SBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_SeqBAIJ_MatScalar(Mat,PetscInt,const PetscInt*,PetscInt,const PetscInt*,const MatScalar*,InsertMode); 25b24ad042SBarry Smith EXTERN PetscErrorCode MatSetValues_MPIBAIJ_MatScalar(Mat,PetscInt,const PetscInt*,PetscInt,const PetscInt*,const MatScalar*,InsertMode); 26b24ad042SBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_MPIBAIJ_MatScalar(Mat,PetscInt,const PetscInt*,PetscInt,const PetscInt*,const MatScalar*,InsertMode); 27b24ad042SBarry Smith EXTERN PetscErrorCode MatSetValues_MPIBAIJ_HT_MatScalar(Mat,PetscInt,const PetscInt*,PetscInt,const PetscInt*,const MatScalar*,InsertMode); 28b24ad042SBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_MPIBAIJ_HT_MatScalar(Mat,PetscInt,const PetscInt*,PetscInt,const PetscInt*,const MatScalar*,InsertMode); 2993fea6afSBarry Smith #else 306fa18ffdSBarry Smith #define MatSetValuesBlocked_SeqBAIJ_MatScalar MatSetValuesBlocked_SeqBAIJ 3193fea6afSBarry Smith #define MatSetValues_MPIBAIJ_MatScalar MatSetValues_MPIBAIJ 3293fea6afSBarry Smith #define MatSetValuesBlocked_MPIBAIJ_MatScalar MatSetValuesBlocked_MPIBAIJ 336fa18ffdSBarry Smith #define MatSetValues_MPIBAIJ_HT_MatScalar MatSetValues_MPIBAIJ_HT 346fa18ffdSBarry Smith #define MatSetValuesBlocked_MPIBAIJ_HT_MatScalar MatSetValuesBlocked_MPIBAIJ_HT 3593fea6afSBarry Smith #endif 363b2fbd54SBarry Smith 374a2ae208SSatish Balay #undef __FUNCT__ 384a2ae208SSatish Balay #define __FUNCT__ "MatGetRowMax_MPIBAIJ" 39dfbe8321SBarry Smith PetscErrorCode MatGetRowMax_MPIBAIJ(Mat A,Vec v) 407843d17aSBarry Smith { 417843d17aSBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 42dfbe8321SBarry Smith PetscErrorCode ierr; 43b24ad042SBarry Smith PetscInt i; 4487828ca2SBarry Smith PetscScalar *va,*vb; 457843d17aSBarry Smith Vec vtmp; 467843d17aSBarry Smith 477843d17aSBarry Smith PetscFunctionBegin; 487843d17aSBarry Smith 497843d17aSBarry Smith ierr = MatGetRowMax(a->A,v);CHKERRQ(ierr); 501ebc52fbSHong Zhang ierr = VecGetArray(v,&va);CHKERRQ(ierr); 517843d17aSBarry Smith 52899cda47SBarry Smith ierr = VecCreateSeq(PETSC_COMM_SELF,A->rmap.n,&vtmp);CHKERRQ(ierr); 537843d17aSBarry Smith ierr = MatGetRowMax(a->B,vtmp);CHKERRQ(ierr); 541ebc52fbSHong Zhang ierr = VecGetArray(vtmp,&vb);CHKERRQ(ierr); 557843d17aSBarry Smith 56899cda47SBarry Smith for (i=0; i<A->rmap.n; i++){ 57273d9f13SBarry Smith if (PetscAbsScalar(va[i]) < PetscAbsScalar(vb[i])) va[i] = vb[i]; 587843d17aSBarry Smith } 597843d17aSBarry Smith 601ebc52fbSHong Zhang ierr = VecRestoreArray(v,&va);CHKERRQ(ierr); 611ebc52fbSHong Zhang ierr = VecRestoreArray(vtmp,&vb);CHKERRQ(ierr); 62ac355199SBarry Smith ierr = VecDestroy(vtmp);CHKERRQ(ierr); 637843d17aSBarry Smith 647843d17aSBarry Smith PetscFunctionReturn(0); 657843d17aSBarry Smith } 667843d17aSBarry Smith 677fc3c18eSBarry Smith EXTERN_C_BEGIN 684a2ae208SSatish Balay #undef __FUNCT__ 694a2ae208SSatish Balay #define __FUNCT__ "MatStoreValues_MPIBAIJ" 70be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatStoreValues_MPIBAIJ(Mat mat) 717fc3c18eSBarry Smith { 727fc3c18eSBarry Smith Mat_MPIBAIJ *aij = (Mat_MPIBAIJ *)mat->data; 73dfbe8321SBarry Smith PetscErrorCode ierr; 747fc3c18eSBarry Smith 757fc3c18eSBarry Smith PetscFunctionBegin; 767fc3c18eSBarry Smith ierr = MatStoreValues(aij->A);CHKERRQ(ierr); 777fc3c18eSBarry Smith ierr = MatStoreValues(aij->B);CHKERRQ(ierr); 787fc3c18eSBarry Smith PetscFunctionReturn(0); 797fc3c18eSBarry Smith } 807fc3c18eSBarry Smith EXTERN_C_END 817fc3c18eSBarry Smith 827fc3c18eSBarry Smith EXTERN_C_BEGIN 834a2ae208SSatish Balay #undef __FUNCT__ 844a2ae208SSatish Balay #define __FUNCT__ "MatRetrieveValues_MPIBAIJ" 85be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatRetrieveValues_MPIBAIJ(Mat mat) 867fc3c18eSBarry Smith { 877fc3c18eSBarry Smith Mat_MPIBAIJ *aij = (Mat_MPIBAIJ *)mat->data; 88dfbe8321SBarry Smith PetscErrorCode ierr; 897fc3c18eSBarry Smith 907fc3c18eSBarry Smith PetscFunctionBegin; 917fc3c18eSBarry Smith ierr = MatRetrieveValues(aij->A);CHKERRQ(ierr); 927fc3c18eSBarry Smith ierr = MatRetrieveValues(aij->B);CHKERRQ(ierr); 937fc3c18eSBarry Smith PetscFunctionReturn(0); 947fc3c18eSBarry Smith } 957fc3c18eSBarry Smith EXTERN_C_END 967fc3c18eSBarry Smith 97537820f0SBarry Smith /* 98537820f0SBarry Smith Local utility routine that creates a mapping from the global column 9957b952d6SSatish Balay number to the local number in the off-diagonal part of the local 10057b952d6SSatish Balay storage of the matrix. This is done in a non scable way since the 10157b952d6SSatish Balay length of colmap equals the global matrix length. 10257b952d6SSatish Balay */ 1034a2ae208SSatish Balay #undef __FUNCT__ 1044a2ae208SSatish Balay #define __FUNCT__ "CreateColmap_MPIBAIJ_Private" 105dfbe8321SBarry Smith PetscErrorCode CreateColmap_MPIBAIJ_Private(Mat mat) 10657b952d6SSatish Balay { 10757b952d6SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 10857b952d6SSatish Balay Mat_SeqBAIJ *B = (Mat_SeqBAIJ*)baij->B->data; 1096849ba73SBarry Smith PetscErrorCode ierr; 110899cda47SBarry Smith PetscInt nbs = B->nbs,i,bs=mat->rmap.bs; 11157b952d6SSatish Balay 112d64ed03dSBarry Smith PetscFunctionBegin; 113aa482453SBarry Smith #if defined (PETSC_USE_CTABLE) 114f14a1c24SBarry Smith ierr = PetscTableCreate(baij->nbs,&baij->colmap);CHKERRQ(ierr); 11548e59246SSatish Balay for (i=0; i<nbs; i++){ 1160f5bd95cSBarry Smith ierr = PetscTableAdd(baij->colmap,baij->garray[i]+1,i*bs+1);CHKERRQ(ierr); 11748e59246SSatish Balay } 11848e59246SSatish Balay #else 119b24ad042SBarry Smith ierr = PetscMalloc((baij->Nbs+1)*sizeof(PetscInt),&baij->colmap);CHKERRQ(ierr); 12052e6d16bSBarry Smith ierr = PetscLogObjectMemory(mat,baij->Nbs*sizeof(PetscInt));CHKERRQ(ierr); 121b24ad042SBarry Smith ierr = PetscMemzero(baij->colmap,baij->Nbs*sizeof(PetscInt));CHKERRQ(ierr); 122928fc39bSSatish Balay for (i=0; i<nbs; i++) baij->colmap[baij->garray[i]] = i*bs+1; 12348e59246SSatish Balay #endif 1243a40ed3dSBarry Smith PetscFunctionReturn(0); 12557b952d6SSatish Balay } 12657b952d6SSatish Balay 12780c1aa95SSatish Balay #define CHUNKSIZE 10 12880c1aa95SSatish Balay 129f5e9677aSSatish Balay #define MatSetValues_SeqBAIJ_A_Private(row,col,value,addv) \ 13080c1aa95SSatish Balay { \ 13180c1aa95SSatish Balay \ 13280c1aa95SSatish Balay brow = row/bs; \ 13380c1aa95SSatish Balay rp = aj + ai[brow]; ap = aa + bs2*ai[brow]; \ 134ac7a638eSSatish Balay rmax = aimax[brow]; nrow = ailen[brow]; \ 13580c1aa95SSatish Balay bcol = col/bs; \ 13680c1aa95SSatish Balay ridx = row % bs; cidx = col % bs; \ 137ab26458aSBarry Smith low = 0; high = nrow; \ 138ab26458aSBarry Smith while (high-low > 3) { \ 139ab26458aSBarry Smith t = (low+high)/2; \ 140ab26458aSBarry Smith if (rp[t] > bcol) high = t; \ 141ab26458aSBarry Smith else low = t; \ 142ab26458aSBarry Smith } \ 143ab26458aSBarry Smith for (_i=low; _i<high; _i++) { \ 14480c1aa95SSatish Balay if (rp[_i] > bcol) break; \ 14580c1aa95SSatish Balay if (rp[_i] == bcol) { \ 14680c1aa95SSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 147eada6651SSatish Balay if (addv == ADD_VALUES) *bap += value; \ 148eada6651SSatish Balay else *bap = value; \ 149ac7a638eSSatish Balay goto a_noinsert; \ 15080c1aa95SSatish Balay } \ 15180c1aa95SSatish Balay } \ 15289280ab3SLois Curfman McInnes if (a->nonew == 1) goto a_noinsert; \ 153085a36d4SBarry Smith if (a->nonew == -1) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \ 154e6b907acSBarry Smith MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,brow,bcol,rmax,aa,ai,aj,rp,ap,aimax,a->nonew); \ 15580c1aa95SSatish Balay N = nrow++ - 1; \ 15680c1aa95SSatish Balay /* shift up all the later entries in this row */ \ 15780c1aa95SSatish Balay for (ii=N; ii>=_i; ii--) { \ 15880c1aa95SSatish Balay rp[ii+1] = rp[ii]; \ 1593eda8832SBarry Smith ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 16080c1aa95SSatish Balay } \ 1613eda8832SBarry Smith if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr); } \ 16280c1aa95SSatish Balay rp[_i] = bcol; \ 16380c1aa95SSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 164ac7a638eSSatish Balay a_noinsert:; \ 16580c1aa95SSatish Balay ailen[brow] = nrow; \ 16680c1aa95SSatish Balay } 16757b952d6SSatish Balay 168ac7a638eSSatish Balay #define MatSetValues_SeqBAIJ_B_Private(row,col,value,addv) \ 169ac7a638eSSatish Balay { \ 170ac7a638eSSatish Balay brow = row/bs; \ 171ac7a638eSSatish Balay rp = bj + bi[brow]; ap = ba + bs2*bi[brow]; \ 172ac7a638eSSatish Balay rmax = bimax[brow]; nrow = bilen[brow]; \ 173ac7a638eSSatish Balay bcol = col/bs; \ 174ac7a638eSSatish Balay ridx = row % bs; cidx = col % bs; \ 175ac7a638eSSatish Balay low = 0; high = nrow; \ 176ac7a638eSSatish Balay while (high-low > 3) { \ 177ac7a638eSSatish Balay t = (low+high)/2; \ 178ac7a638eSSatish Balay if (rp[t] > bcol) high = t; \ 179ac7a638eSSatish Balay else low = t; \ 180ac7a638eSSatish Balay } \ 181ac7a638eSSatish Balay for (_i=low; _i<high; _i++) { \ 182ac7a638eSSatish Balay if (rp[_i] > bcol) break; \ 183ac7a638eSSatish Balay if (rp[_i] == bcol) { \ 184ac7a638eSSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 185ac7a638eSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 186ac7a638eSSatish Balay else *bap = value; \ 187ac7a638eSSatish Balay goto b_noinsert; \ 188ac7a638eSSatish Balay } \ 189ac7a638eSSatish Balay } \ 19089280ab3SLois Curfman McInnes if (b->nonew == 1) goto b_noinsert; \ 191085a36d4SBarry Smith if (b->nonew == -1) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \ 192e6b907acSBarry Smith MatSeqXAIJReallocateAIJ(B,b->mbs,bs2,nrow,brow,bcol,rmax,ba,bi,bj,rp,ap,bimax,b->nonew); \ 193085a36d4SBarry Smith CHKMEMQ;\ 194ac7a638eSSatish Balay N = nrow++ - 1; \ 195ac7a638eSSatish Balay /* shift up all the later entries in this row */ \ 196ac7a638eSSatish Balay for (ii=N; ii>=_i; ii--) { \ 197ac7a638eSSatish Balay rp[ii+1] = rp[ii]; \ 1983eda8832SBarry Smith ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 199ac7a638eSSatish Balay } \ 2003eda8832SBarry Smith if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr);} \ 201ac7a638eSSatish Balay rp[_i] = bcol; \ 202ac7a638eSSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 203ac7a638eSSatish Balay b_noinsert:; \ 204ac7a638eSSatish Balay bilen[brow] = nrow; \ 205ac7a638eSSatish Balay } 206ac7a638eSSatish Balay 20793fea6afSBarry Smith #if defined(PETSC_USE_MAT_SINGLE) 2084a2ae208SSatish Balay #undef __FUNCT__ 2094a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_MPIBAIJ" 210b24ad042SBarry Smith PetscErrorCode MatSetValues_MPIBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv) 21157b952d6SSatish Balay { 2126fa18ffdSBarry Smith Mat_MPIBAIJ *b = (Mat_MPIBAIJ*)mat->data; 213dfbe8321SBarry Smith PetscErrorCode ierr; 214b24ad042SBarry Smith PetscInt i,N = m*n; 2156fa18ffdSBarry Smith MatScalar *vsingle; 21693fea6afSBarry Smith 21793fea6afSBarry Smith PetscFunctionBegin; 2186fa18ffdSBarry Smith if (N > b->setvalueslen) { 21905b42c5fSBarry Smith ierr = PetscFree(b->setvaluescopy);CHKERRQ(ierr); 22082502324SSatish Balay ierr = PetscMalloc(N*sizeof(MatScalar),&b->setvaluescopy);CHKERRQ(ierr); 2216fa18ffdSBarry Smith b->setvalueslen = N; 2226fa18ffdSBarry Smith } 2236fa18ffdSBarry Smith vsingle = b->setvaluescopy; 2246fa18ffdSBarry Smith 22593fea6afSBarry Smith for (i=0; i<N; i++) { 22693fea6afSBarry Smith vsingle[i] = v[i]; 22793fea6afSBarry Smith } 22893fea6afSBarry Smith ierr = MatSetValues_MPIBAIJ_MatScalar(mat,m,im,n,in,vsingle,addv);CHKERRQ(ierr); 22993fea6afSBarry Smith PetscFunctionReturn(0); 23093fea6afSBarry Smith } 23193fea6afSBarry Smith 2324a2ae208SSatish Balay #undef __FUNCT__ 2334a2ae208SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_MPIBAIJ" 234b24ad042SBarry Smith PetscErrorCode MatSetValuesBlocked_MPIBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv) 23593fea6afSBarry Smith { 2366fa18ffdSBarry Smith Mat_MPIBAIJ *b = (Mat_MPIBAIJ*)mat->data; 237dfbe8321SBarry Smith PetscErrorCode ierr; 238b24ad042SBarry Smith PetscInt i,N = m*n*b->bs2; 2396fa18ffdSBarry Smith MatScalar *vsingle; 24093fea6afSBarry Smith 24193fea6afSBarry Smith PetscFunctionBegin; 2426fa18ffdSBarry Smith if (N > b->setvalueslen) { 24305b42c5fSBarry Smith ierr = PetscFree(b->setvaluescopy);CHKERRQ(ierr); 24482502324SSatish Balay ierr = PetscMalloc(N*sizeof(MatScalar),&b->setvaluescopy);CHKERRQ(ierr); 2456fa18ffdSBarry Smith b->setvalueslen = N; 2466fa18ffdSBarry Smith } 2476fa18ffdSBarry Smith vsingle = b->setvaluescopy; 24893fea6afSBarry Smith for (i=0; i<N; i++) { 24993fea6afSBarry Smith vsingle[i] = v[i]; 25093fea6afSBarry Smith } 25193fea6afSBarry Smith ierr = MatSetValuesBlocked_MPIBAIJ_MatScalar(mat,m,im,n,in,vsingle,addv);CHKERRQ(ierr); 25293fea6afSBarry Smith PetscFunctionReturn(0); 25393fea6afSBarry Smith } 2546fa18ffdSBarry Smith 2554a2ae208SSatish Balay #undef __FUNCT__ 2564a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_MPIBAIJ_HT" 257b24ad042SBarry Smith PetscErrorCode MatSetValues_MPIBAIJ_HT(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv) 2586fa18ffdSBarry Smith { 2596fa18ffdSBarry Smith Mat_MPIBAIJ *b = (Mat_MPIBAIJ*)mat->data; 260dfbe8321SBarry Smith PetscErrorCode ierr; 261b24ad042SBarry Smith PetscInt i,N = m*n; 2626fa18ffdSBarry Smith MatScalar *vsingle; 2636fa18ffdSBarry Smith 2646fa18ffdSBarry Smith PetscFunctionBegin; 2656fa18ffdSBarry Smith if (N > b->setvalueslen) { 26605b42c5fSBarry Smith ierr = PetscFree(b->setvaluescopy);CHKERRQ(ierr); 26782502324SSatish Balay ierr = PetscMalloc(N*sizeof(MatScalar),&b->setvaluescopy);CHKERRQ(ierr); 2686fa18ffdSBarry Smith b->setvalueslen = N; 2696fa18ffdSBarry Smith } 2706fa18ffdSBarry Smith vsingle = b->setvaluescopy; 2716fa18ffdSBarry Smith for (i=0; i<N; i++) { 2726fa18ffdSBarry Smith vsingle[i] = v[i]; 2736fa18ffdSBarry Smith } 2746fa18ffdSBarry Smith ierr = MatSetValues_MPIBAIJ_HT_MatScalar(mat,m,im,n,in,vsingle,addv);CHKERRQ(ierr); 2756fa18ffdSBarry Smith PetscFunctionReturn(0); 2766fa18ffdSBarry Smith } 2776fa18ffdSBarry Smith 2784a2ae208SSatish Balay #undef __FUNCT__ 2794a2ae208SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_MPIBAIJ_HT" 280b24ad042SBarry Smith PetscErrorCode MatSetValuesBlocked_MPIBAIJ_HT(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv) 2816fa18ffdSBarry Smith { 2826fa18ffdSBarry Smith Mat_MPIBAIJ *b = (Mat_MPIBAIJ*)mat->data; 283dfbe8321SBarry Smith PetscErrorCode ierr; 284b24ad042SBarry Smith PetscInt i,N = m*n*b->bs2; 2856fa18ffdSBarry Smith MatScalar *vsingle; 2866fa18ffdSBarry Smith 2876fa18ffdSBarry Smith PetscFunctionBegin; 2886fa18ffdSBarry Smith if (N > b->setvalueslen) { 28905b42c5fSBarry Smith ierr = PetscFree(b->setvaluescopy);CHKERRQ(ierr); 29082502324SSatish Balay ierr = PetscMalloc(N*sizeof(MatScalar),&b->setvaluescopy);CHKERRQ(ierr); 2916fa18ffdSBarry Smith b->setvalueslen = N; 2926fa18ffdSBarry Smith } 2936fa18ffdSBarry Smith vsingle = b->setvaluescopy; 2946fa18ffdSBarry Smith for (i=0; i<N; i++) { 2956fa18ffdSBarry Smith vsingle[i] = v[i]; 2966fa18ffdSBarry Smith } 2976fa18ffdSBarry Smith ierr = MatSetValuesBlocked_MPIBAIJ_HT_MatScalar(mat,m,im,n,in,vsingle,addv);CHKERRQ(ierr); 2986fa18ffdSBarry Smith PetscFunctionReturn(0); 2996fa18ffdSBarry Smith } 30093fea6afSBarry Smith #endif 30193fea6afSBarry Smith 3024a2ae208SSatish Balay #undef __FUNCT__ 303e03e44c9SSatish Balay #define __FUNCT__ "MatSetValues_MPIBAIJ_MatScalar" 304b24ad042SBarry Smith PetscErrorCode MatSetValues_MPIBAIJ_MatScalar(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const MatScalar v[],InsertMode addv) 30593fea6afSBarry Smith { 30657b952d6SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 30793fea6afSBarry Smith MatScalar value; 308273d9f13SBarry Smith PetscTruth roworiented = baij->roworiented; 309dfbe8321SBarry Smith PetscErrorCode ierr; 310b24ad042SBarry Smith PetscInt i,j,row,col; 311899cda47SBarry Smith PetscInt rstart_orig=mat->rmap.rstart; 312899cda47SBarry Smith PetscInt rend_orig=mat->rmap.rend,cstart_orig=mat->cmap.rstart; 313899cda47SBarry Smith PetscInt cend_orig=mat->cmap.rend,bs=mat->rmap.bs; 31457b952d6SSatish Balay 315eada6651SSatish Balay /* Some Variables required in the macro */ 31680c1aa95SSatish Balay Mat A = baij->A; 31780c1aa95SSatish Balay Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)(A)->data; 318b24ad042SBarry Smith PetscInt *aimax=a->imax,*ai=a->i,*ailen=a->ilen,*aj=a->j; 3193eda8832SBarry Smith MatScalar *aa=a->a; 320ac7a638eSSatish Balay 321ac7a638eSSatish Balay Mat B = baij->B; 322ac7a638eSSatish Balay Mat_SeqBAIJ *b = (Mat_SeqBAIJ*)(B)->data; 323b24ad042SBarry Smith PetscInt *bimax=b->imax,*bi=b->i,*bilen=b->ilen,*bj=b->j; 3243eda8832SBarry Smith MatScalar *ba=b->a; 325ac7a638eSSatish Balay 326b24ad042SBarry Smith PetscInt *rp,ii,nrow,_i,rmax,N,brow,bcol; 327b24ad042SBarry Smith PetscInt low,high,t,ridx,cidx,bs2=a->bs2; 3283eda8832SBarry Smith MatScalar *ap,*bap; 32980c1aa95SSatish Balay 330d64ed03dSBarry Smith PetscFunctionBegin; 33157b952d6SSatish Balay for (i=0; i<m; i++) { 3325ef9f2a5SBarry Smith if (im[i] < 0) continue; 3332515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 334899cda47SBarry Smith if (im[i] >= mat->rmap.N) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],mat->rmap.N-1); 335639f9d9dSBarry Smith #endif 33657b952d6SSatish Balay if (im[i] >= rstart_orig && im[i] < rend_orig) { 33757b952d6SSatish Balay row = im[i] - rstart_orig; 33857b952d6SSatish Balay for (j=0; j<n; j++) { 33957b952d6SSatish Balay if (in[j] >= cstart_orig && in[j] < cend_orig){ 34057b952d6SSatish Balay col = in[j] - cstart_orig; 34157b952d6SSatish Balay if (roworiented) value = v[i*n+j]; else value = v[i+j*m]; 342f5e9677aSSatish Balay MatSetValues_SeqBAIJ_A_Private(row,col,value,addv); 34380c1aa95SSatish Balay /* ierr = MatSetValues_SeqBAIJ(baij->A,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 34473959e64SBarry Smith } else if (in[j] < 0) continue; 3452515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 346899cda47SBarry Smith else if (in[j] >= mat->cmap.N) {SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",in[i],mat->cmap.N-1);} 347639f9d9dSBarry Smith #endif 34857b952d6SSatish Balay else { 34957b952d6SSatish Balay if (mat->was_assembled) { 350905e6a2fSBarry Smith if (!baij->colmap) { 351905e6a2fSBarry Smith ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 352905e6a2fSBarry Smith } 353aa482453SBarry Smith #if defined (PETSC_USE_CTABLE) 3540f5bd95cSBarry Smith ierr = PetscTableFind(baij->colmap,in[j]/bs + 1,&col);CHKERRQ(ierr); 355bba1ac68SSatish Balay col = col - 1; 35648e59246SSatish Balay #else 357bba1ac68SSatish Balay col = baij->colmap[in[j]/bs] - 1; 35848e59246SSatish Balay #endif 35957b952d6SSatish Balay if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) { 36057b952d6SSatish Balay ierr = DisAssemble_MPIBAIJ(mat);CHKERRQ(ierr); 3618295de27SSatish Balay col = in[j]; 3629bf004c3SSatish Balay /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */ 3639bf004c3SSatish Balay B = baij->B; 3649bf004c3SSatish Balay b = (Mat_SeqBAIJ*)(B)->data; 3659bf004c3SSatish Balay bimax=b->imax;bi=b->i;bilen=b->ilen;bj=b->j; 3669bf004c3SSatish Balay ba=b->a; 367bba1ac68SSatish Balay } else col += in[j]%bs; 3688295de27SSatish Balay } else col = in[j]; 36957b952d6SSatish Balay if (roworiented) value = v[i*n+j]; else value = v[i+j*m]; 37090da58bdSSatish Balay MatSetValues_SeqBAIJ_B_Private(row,col,value,addv); 37190da58bdSSatish Balay /* ierr = MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 37257b952d6SSatish Balay } 37357b952d6SSatish Balay } 374d64ed03dSBarry Smith } else { 37590f02eecSBarry Smith if (!baij->donotstash) { 376ff2fd236SBarry Smith if (roworiented) { 3776fa18ffdSBarry Smith ierr = MatStashValuesRow_Private(&mat->stash,im[i],n,in,v+i*n);CHKERRQ(ierr); 378ff2fd236SBarry Smith } else { 3796fa18ffdSBarry Smith ierr = MatStashValuesCol_Private(&mat->stash,im[i],n,in,v+i,m);CHKERRQ(ierr); 38057b952d6SSatish Balay } 38157b952d6SSatish Balay } 38257b952d6SSatish Balay } 38390f02eecSBarry Smith } 3843a40ed3dSBarry Smith PetscFunctionReturn(0); 38557b952d6SSatish Balay } 38657b952d6SSatish Balay 3874a2ae208SSatish Balay #undef __FUNCT__ 3884a2ae208SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_MPIBAIJ_MatScalar" 389b24ad042SBarry Smith PetscErrorCode MatSetValuesBlocked_MPIBAIJ_MatScalar(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const MatScalar v[],InsertMode addv) 390ab26458aSBarry Smith { 391ab26458aSBarry Smith Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 392f15d580aSBarry Smith const MatScalar *value; 393f15d580aSBarry Smith MatScalar *barray=baij->barray; 394273d9f13SBarry Smith PetscTruth roworiented = baij->roworiented; 395dfbe8321SBarry Smith PetscErrorCode ierr; 396899cda47SBarry Smith PetscInt i,j,ii,jj,row,col,rstart=baij->rstartbs; 397899cda47SBarry Smith PetscInt rend=baij->rendbs,cstart=baij->cstartbs,stepval; 398899cda47SBarry Smith PetscInt cend=baij->cendbs,bs=mat->rmap.bs,bs2=baij->bs2; 399ab26458aSBarry Smith 400b16ae2b1SBarry Smith PetscFunctionBegin; 40130793edcSSatish Balay if(!barray) { 40282502324SSatish Balay ierr = PetscMalloc(bs2*sizeof(MatScalar),&barray);CHKERRQ(ierr); 40382502324SSatish Balay baij->barray = barray; 40430793edcSSatish Balay } 40530793edcSSatish Balay 406ab26458aSBarry Smith if (roworiented) { 407ab26458aSBarry Smith stepval = (n-1)*bs; 408ab26458aSBarry Smith } else { 409ab26458aSBarry Smith stepval = (m-1)*bs; 410ab26458aSBarry Smith } 411ab26458aSBarry Smith for (i=0; i<m; i++) { 4125ef9f2a5SBarry Smith if (im[i] < 0) continue; 4132515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 41477431f27SBarry Smith if (im[i] >= baij->Mbs) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large, row %D max %D",im[i],baij->Mbs-1); 415ab26458aSBarry Smith #endif 416ab26458aSBarry Smith if (im[i] >= rstart && im[i] < rend) { 417ab26458aSBarry Smith row = im[i] - rstart; 418ab26458aSBarry Smith for (j=0; j<n; j++) { 41915b57d14SSatish Balay /* If NumCol = 1 then a copy is not required */ 42015b57d14SSatish Balay if ((roworiented) && (n == 1)) { 421f15d580aSBarry Smith barray = (MatScalar*)v + i*bs2; 42215b57d14SSatish Balay } else if((!roworiented) && (m == 1)) { 423f15d580aSBarry Smith barray = (MatScalar*)v + j*bs2; 42415b57d14SSatish Balay } else { /* Here a copy is required */ 425ab26458aSBarry Smith if (roworiented) { 426ab26458aSBarry Smith value = v + i*(stepval+bs)*bs + j*bs; 427ab26458aSBarry Smith } else { 428ab26458aSBarry Smith value = v + j*(stepval+bs)*bs + i*bs; 429abef11f7SSatish Balay } 43047513183SBarry Smith for (ii=0; ii<bs; ii++,value+=stepval) { 43147513183SBarry Smith for (jj=0; jj<bs; jj++) { 43230793edcSSatish Balay *barray++ = *value++; 43347513183SBarry Smith } 43447513183SBarry Smith } 43530793edcSSatish Balay barray -=bs2; 43615b57d14SSatish Balay } 437abef11f7SSatish Balay 438abef11f7SSatish Balay if (in[j] >= cstart && in[j] < cend){ 439abef11f7SSatish Balay col = in[j] - cstart; 44093fea6afSBarry Smith ierr = MatSetValuesBlocked_SeqBAIJ_MatScalar(baij->A,1,&row,1,&col,barray,addv);CHKERRQ(ierr); 441ab26458aSBarry Smith } 4425ef9f2a5SBarry Smith else if (in[j] < 0) continue; 4432515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 44477431f27SBarry Smith else if (in[j] >= baij->Nbs) {SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large, col %D max %D",in[j],baij->Nbs-1);} 445ab26458aSBarry Smith #endif 446ab26458aSBarry Smith else { 447ab26458aSBarry Smith if (mat->was_assembled) { 448ab26458aSBarry Smith if (!baij->colmap) { 449ab26458aSBarry Smith ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 450ab26458aSBarry Smith } 451a5eb4965SSatish Balay 4522515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 453aa482453SBarry Smith #if defined (PETSC_USE_CTABLE) 454b24ad042SBarry Smith { PetscInt data; 4550f5bd95cSBarry Smith ierr = PetscTableFind(baij->colmap,in[j]+1,&data);CHKERRQ(ierr); 45629bbc08cSBarry Smith if ((data - 1) % bs) SETERRQ(PETSC_ERR_PLIB,"Incorrect colmap"); 457fa46199cSSatish Balay } 45848e59246SSatish Balay #else 45929bbc08cSBarry Smith if ((baij->colmap[in[j]] - 1) % bs) SETERRQ(PETSC_ERR_PLIB,"Incorrect colmap"); 460a5eb4965SSatish Balay #endif 46148e59246SSatish Balay #endif 462aa482453SBarry Smith #if defined (PETSC_USE_CTABLE) 4630f5bd95cSBarry Smith ierr = PetscTableFind(baij->colmap,in[j]+1,&col);CHKERRQ(ierr); 464fa46199cSSatish Balay col = (col - 1)/bs; 46548e59246SSatish Balay #else 466a5eb4965SSatish Balay col = (baij->colmap[in[j]] - 1)/bs; 46748e59246SSatish Balay #endif 468ab26458aSBarry Smith if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) { 469ab26458aSBarry Smith ierr = DisAssemble_MPIBAIJ(mat);CHKERRQ(ierr); 470ab26458aSBarry Smith col = in[j]; 471ab26458aSBarry Smith } 472ab26458aSBarry Smith } 473ab26458aSBarry Smith else col = in[j]; 47493fea6afSBarry Smith ierr = MatSetValuesBlocked_SeqBAIJ_MatScalar(baij->B,1,&row,1,&col,barray,addv);CHKERRQ(ierr); 475ab26458aSBarry Smith } 476ab26458aSBarry Smith } 477d64ed03dSBarry Smith } else { 478ab26458aSBarry Smith if (!baij->donotstash) { 479ff2fd236SBarry Smith if (roworiented) { 4806fa18ffdSBarry Smith ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 481ff2fd236SBarry Smith } else { 4826fa18ffdSBarry Smith ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 483ff2fd236SBarry Smith } 484abef11f7SSatish Balay } 485ab26458aSBarry Smith } 486ab26458aSBarry Smith } 4873a40ed3dSBarry Smith PetscFunctionReturn(0); 488ab26458aSBarry Smith } 4896fa18ffdSBarry Smith 4900bdbc534SSatish Balay #define HASH_KEY 0.6180339887 491b24ad042SBarry Smith #define HASH(size,key,tmp) (tmp = (key)*HASH_KEY,(PetscInt)((size)*(tmp-(PetscInt)tmp))) 492b24ad042SBarry Smith /* #define HASH(size,key) ((PetscInt)((size)*fmod(((key)*HASH_KEY),1))) */ 493b24ad042SBarry Smith /* #define HASH(size,key,tmp) ((PetscInt)((size)*fmod(((key)*HASH_KEY),1))) */ 4944a2ae208SSatish Balay #undef __FUNCT__ 4954a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_MPIBAIJ_HT_MatScalar" 496b24ad042SBarry Smith PetscErrorCode MatSetValues_MPIBAIJ_HT_MatScalar(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const MatScalar v[],InsertMode addv) 4970bdbc534SSatish Balay { 4980bdbc534SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 499273d9f13SBarry Smith PetscTruth roworiented = baij->roworiented; 500dfbe8321SBarry Smith PetscErrorCode ierr; 501b24ad042SBarry Smith PetscInt i,j,row,col; 502899cda47SBarry Smith PetscInt rstart_orig=mat->rmap.rstart; 503899cda47SBarry Smith PetscInt rend_orig=mat->rmap.rend,Nbs=baij->Nbs; 504899cda47SBarry Smith PetscInt h1,key,size=baij->ht_size,bs=mat->rmap.bs,*HT=baij->ht,idx; 505329f5518SBarry Smith PetscReal tmp; 5063eda8832SBarry Smith MatScalar **HD = baij->hd,value; 5072515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 508b24ad042SBarry Smith PetscInt total_ct=baij->ht_total_ct,insert_ct=baij->ht_insert_ct; 5094a15367fSSatish Balay #endif 5100bdbc534SSatish Balay 5110bdbc534SSatish Balay PetscFunctionBegin; 5120bdbc534SSatish Balay 5130bdbc534SSatish Balay for (i=0; i<m; i++) { 5142515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 51529bbc08cSBarry Smith if (im[i] < 0) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Negative row"); 516899cda47SBarry Smith if (im[i] >= mat->rmap.N) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],mat->rmap.N-1); 5170bdbc534SSatish Balay #endif 5180bdbc534SSatish Balay row = im[i]; 519c2760754SSatish Balay if (row >= rstart_orig && row < rend_orig) { 5200bdbc534SSatish Balay for (j=0; j<n; j++) { 5210bdbc534SSatish Balay col = in[j]; 5226fa18ffdSBarry Smith if (roworiented) value = v[i*n+j]; else value = v[i+j*m]; 523b24ad042SBarry Smith /* Look up PetscInto the Hash Table */ 524c2760754SSatish Balay key = (row/bs)*Nbs+(col/bs)+1; 525c2760754SSatish Balay h1 = HASH(size,key,tmp); 5260bdbc534SSatish Balay 527c2760754SSatish Balay 528c2760754SSatish Balay idx = h1; 5292515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 530187ce0cbSSatish Balay insert_ct++; 531187ce0cbSSatish Balay total_ct++; 532187ce0cbSSatish Balay if (HT[idx] != key) { 533187ce0cbSSatish Balay for (idx=h1; (idx<size) && (HT[idx]!=key); idx++,total_ct++); 534187ce0cbSSatish Balay if (idx == size) { 535187ce0cbSSatish Balay for (idx=0; (idx<h1) && (HT[idx]!=key); idx++,total_ct++); 536187ce0cbSSatish Balay if (idx == h1) { 53777431f27SBarry Smith SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"(%D,%D) has no entry in the hash table", row, col); 538187ce0cbSSatish Balay } 539187ce0cbSSatish Balay } 540187ce0cbSSatish Balay } 541187ce0cbSSatish Balay #else 542c2760754SSatish Balay if (HT[idx] != key) { 543c2760754SSatish Balay for (idx=h1; (idx<size) && (HT[idx]!=key); idx++); 544c2760754SSatish Balay if (idx == size) { 545c2760754SSatish Balay for (idx=0; (idx<h1) && (HT[idx]!=key); idx++); 546c2760754SSatish Balay if (idx == h1) { 54777431f27SBarry Smith SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"(%D,%D) has no entry in the hash table", row, col); 548c2760754SSatish Balay } 549c2760754SSatish Balay } 550c2760754SSatish Balay } 551187ce0cbSSatish Balay #endif 552c2760754SSatish Balay /* A HASH table entry is found, so insert the values at the correct address */ 553c2760754SSatish Balay if (addv == ADD_VALUES) *(HD[idx]+ (col % bs)*bs + (row % bs)) += value; 554c2760754SSatish Balay else *(HD[idx]+ (col % bs)*bs + (row % bs)) = value; 5550bdbc534SSatish Balay } 5560bdbc534SSatish Balay } else { 5570bdbc534SSatish Balay if (!baij->donotstash) { 558ff2fd236SBarry Smith if (roworiented) { 5598798bf22SSatish Balay ierr = MatStashValuesRow_Private(&mat->stash,im[i],n,in,v+i*n);CHKERRQ(ierr); 560ff2fd236SBarry Smith } else { 5618798bf22SSatish Balay ierr = MatStashValuesCol_Private(&mat->stash,im[i],n,in,v+i,m);CHKERRQ(ierr); 5620bdbc534SSatish Balay } 5630bdbc534SSatish Balay } 5640bdbc534SSatish Balay } 5650bdbc534SSatish Balay } 5662515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 567187ce0cbSSatish Balay baij->ht_total_ct = total_ct; 568187ce0cbSSatish Balay baij->ht_insert_ct = insert_ct; 569187ce0cbSSatish Balay #endif 5700bdbc534SSatish Balay PetscFunctionReturn(0); 5710bdbc534SSatish Balay } 5720bdbc534SSatish Balay 5734a2ae208SSatish Balay #undef __FUNCT__ 5744a2ae208SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_MPIBAIJ_HT_MatScalar" 575b24ad042SBarry Smith PetscErrorCode MatSetValuesBlocked_MPIBAIJ_HT_MatScalar(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const MatScalar v[],InsertMode addv) 5760bdbc534SSatish Balay { 5770bdbc534SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 578273d9f13SBarry Smith PetscTruth roworiented = baij->roworiented; 579dfbe8321SBarry Smith PetscErrorCode ierr; 580b24ad042SBarry Smith PetscInt i,j,ii,jj,row,col; 581899cda47SBarry Smith PetscInt rstart=baij->rstartbs; 582899cda47SBarry Smith PetscInt rend=mat->rmap.rend,stepval,bs=mat->rmap.bs,bs2=baij->bs2; 583b24ad042SBarry Smith PetscInt h1,key,size=baij->ht_size,idx,*HT=baij->ht,Nbs=baij->Nbs; 584329f5518SBarry Smith PetscReal tmp; 5853eda8832SBarry Smith MatScalar **HD = baij->hd,*baij_a; 586f15d580aSBarry Smith const MatScalar *v_t,*value; 5872515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 588b24ad042SBarry Smith PetscInt total_ct=baij->ht_total_ct,insert_ct=baij->ht_insert_ct; 5894a15367fSSatish Balay #endif 5900bdbc534SSatish Balay 591d0a41580SSatish Balay PetscFunctionBegin; 592d0a41580SSatish Balay 5930bdbc534SSatish Balay if (roworiented) { 5940bdbc534SSatish Balay stepval = (n-1)*bs; 5950bdbc534SSatish Balay } else { 5960bdbc534SSatish Balay stepval = (m-1)*bs; 5970bdbc534SSatish Balay } 5980bdbc534SSatish Balay for (i=0; i<m; i++) { 5992515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 60077431f27SBarry Smith if (im[i] < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %D",im[i]); 60177431f27SBarry Smith if (im[i] >= baij->Mbs) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],baij->Mbs-1); 6020bdbc534SSatish Balay #endif 6030bdbc534SSatish Balay row = im[i]; 604187ce0cbSSatish Balay v_t = v + i*bs2; 605c2760754SSatish Balay if (row >= rstart && row < rend) { 6060bdbc534SSatish Balay for (j=0; j<n; j++) { 6070bdbc534SSatish Balay col = in[j]; 6080bdbc534SSatish Balay 6090bdbc534SSatish Balay /* Look up into the Hash Table */ 610c2760754SSatish Balay key = row*Nbs+col+1; 611c2760754SSatish Balay h1 = HASH(size,key,tmp); 6120bdbc534SSatish Balay 613c2760754SSatish Balay idx = h1; 6142515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 615187ce0cbSSatish Balay total_ct++; 616187ce0cbSSatish Balay insert_ct++; 617187ce0cbSSatish Balay if (HT[idx] != key) { 618187ce0cbSSatish Balay for (idx=h1; (idx<size) && (HT[idx]!=key); idx++,total_ct++); 619187ce0cbSSatish Balay if (idx == size) { 620187ce0cbSSatish Balay for (idx=0; (idx<h1) && (HT[idx]!=key); idx++,total_ct++); 621187ce0cbSSatish Balay if (idx == h1) { 62277431f27SBarry Smith SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"(%D,%D) has no entry in the hash table", row, col); 623187ce0cbSSatish Balay } 624187ce0cbSSatish Balay } 625187ce0cbSSatish Balay } 626187ce0cbSSatish Balay #else 627c2760754SSatish Balay if (HT[idx] != key) { 628c2760754SSatish Balay for (idx=h1; (idx<size) && (HT[idx]!=key); idx++); 629c2760754SSatish Balay if (idx == size) { 630c2760754SSatish Balay for (idx=0; (idx<h1) && (HT[idx]!=key); idx++); 631c2760754SSatish Balay if (idx == h1) { 63277431f27SBarry Smith SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"(%D,%D) has no entry in the hash table", row, col); 633c2760754SSatish Balay } 634c2760754SSatish Balay } 635c2760754SSatish Balay } 636187ce0cbSSatish Balay #endif 637c2760754SSatish Balay baij_a = HD[idx]; 6380bdbc534SSatish Balay if (roworiented) { 639c2760754SSatish Balay /*value = v + i*(stepval+bs)*bs + j*bs;*/ 640187ce0cbSSatish Balay /* value = v + (i*(stepval+bs)+j)*bs; */ 641187ce0cbSSatish Balay value = v_t; 642187ce0cbSSatish Balay v_t += bs; 643fef45726SSatish Balay if (addv == ADD_VALUES) { 644c2760754SSatish Balay for (ii=0; ii<bs; ii++,value+=stepval) { 645c2760754SSatish Balay for (jj=ii; jj<bs2; jj+=bs) { 646fef45726SSatish Balay baij_a[jj] += *value++; 647b4cc0f5aSSatish Balay } 648b4cc0f5aSSatish Balay } 649fef45726SSatish Balay } else { 650c2760754SSatish Balay for (ii=0; ii<bs; ii++,value+=stepval) { 651c2760754SSatish Balay for (jj=ii; jj<bs2; jj+=bs) { 652fef45726SSatish Balay baij_a[jj] = *value++; 653fef45726SSatish Balay } 654fef45726SSatish Balay } 655fef45726SSatish Balay } 6560bdbc534SSatish Balay } else { 6570bdbc534SSatish Balay value = v + j*(stepval+bs)*bs + i*bs; 658fef45726SSatish Balay if (addv == ADD_VALUES) { 659b4cc0f5aSSatish Balay for (ii=0; ii<bs; ii++,value+=stepval,baij_a+=bs) { 6600bdbc534SSatish Balay for (jj=0; jj<bs; jj++) { 661fef45726SSatish Balay baij_a[jj] += *value++; 662fef45726SSatish Balay } 663fef45726SSatish Balay } 664fef45726SSatish Balay } else { 665fef45726SSatish Balay for (ii=0; ii<bs; ii++,value+=stepval,baij_a+=bs) { 666fef45726SSatish Balay for (jj=0; jj<bs; jj++) { 667fef45726SSatish Balay baij_a[jj] = *value++; 668fef45726SSatish Balay } 669b4cc0f5aSSatish Balay } 6700bdbc534SSatish Balay } 6710bdbc534SSatish Balay } 6720bdbc534SSatish Balay } 6730bdbc534SSatish Balay } else { 6740bdbc534SSatish Balay if (!baij->donotstash) { 6750bdbc534SSatish Balay if (roworiented) { 6768798bf22SSatish Balay ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 6770bdbc534SSatish Balay } else { 6788798bf22SSatish Balay ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 6790bdbc534SSatish Balay } 6800bdbc534SSatish Balay } 6810bdbc534SSatish Balay } 6820bdbc534SSatish Balay } 6832515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 684187ce0cbSSatish Balay baij->ht_total_ct = total_ct; 685187ce0cbSSatish Balay baij->ht_insert_ct = insert_ct; 686187ce0cbSSatish Balay #endif 6870bdbc534SSatish Balay PetscFunctionReturn(0); 6880bdbc534SSatish Balay } 689133cdb44SSatish Balay 6904a2ae208SSatish Balay #undef __FUNCT__ 6914a2ae208SSatish Balay #define __FUNCT__ "MatGetValues_MPIBAIJ" 692b24ad042SBarry Smith PetscErrorCode MatGetValues_MPIBAIJ(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[]) 693d6de1c52SSatish Balay { 694d6de1c52SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 6956849ba73SBarry Smith PetscErrorCode ierr; 696899cda47SBarry Smith PetscInt bs=mat->rmap.bs,i,j,bsrstart = mat->rmap.rstart,bsrend = mat->rmap.rend; 697899cda47SBarry Smith PetscInt bscstart = mat->cmap.rstart,bscend = mat->cmap.rend,row,col,data; 698d6de1c52SSatish Balay 699133cdb44SSatish Balay PetscFunctionBegin; 700d6de1c52SSatish Balay for (i=0; i<m; i++) { 70177431f27SBarry Smith if (idxm[i] < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %D",idxm[i]); 702899cda47SBarry Smith if (idxm[i] >= mat->rmap.N) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",idxm[i],mat->rmap.N-1); 703d6de1c52SSatish Balay if (idxm[i] >= bsrstart && idxm[i] < bsrend) { 704d6de1c52SSatish Balay row = idxm[i] - bsrstart; 705d6de1c52SSatish Balay for (j=0; j<n; j++) { 70677431f27SBarry Smith if (idxn[j] < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Negative column: %D",idxn[j]); 707899cda47SBarry Smith if (idxn[j] >= mat->cmap.N) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",idxn[j],mat->cmap.N-1); 708d6de1c52SSatish Balay if (idxn[j] >= bscstart && idxn[j] < bscend){ 709d6de1c52SSatish Balay col = idxn[j] - bscstart; 71098dd23e9SBarry Smith ierr = MatGetValues_SeqBAIJ(baij->A,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr); 711d64ed03dSBarry Smith } else { 712905e6a2fSBarry Smith if (!baij->colmap) { 713905e6a2fSBarry Smith ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 714905e6a2fSBarry Smith } 715aa482453SBarry Smith #if defined (PETSC_USE_CTABLE) 7160f5bd95cSBarry Smith ierr = PetscTableFind(baij->colmap,idxn[j]/bs+1,&data);CHKERRQ(ierr); 717fa46199cSSatish Balay data --; 71848e59246SSatish Balay #else 71948e59246SSatish Balay data = baij->colmap[idxn[j]/bs]-1; 72048e59246SSatish Balay #endif 72148e59246SSatish Balay if((data < 0) || (baij->garray[data/bs] != idxn[j]/bs)) *(v+i*n+j) = 0.0; 722d9d09a02SSatish Balay else { 72348e59246SSatish Balay col = data + idxn[j]%bs; 72498dd23e9SBarry Smith ierr = MatGetValues_SeqBAIJ(baij->B,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr); 725d6de1c52SSatish Balay } 726d6de1c52SSatish Balay } 727d6de1c52SSatish Balay } 728d64ed03dSBarry Smith } else { 72929bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"Only local values currently supported"); 730d6de1c52SSatish Balay } 731d6de1c52SSatish Balay } 7323a40ed3dSBarry Smith PetscFunctionReturn(0); 733d6de1c52SSatish Balay } 734d6de1c52SSatish Balay 7354a2ae208SSatish Balay #undef __FUNCT__ 7364a2ae208SSatish Balay #define __FUNCT__ "MatNorm_MPIBAIJ" 737dfbe8321SBarry Smith PetscErrorCode MatNorm_MPIBAIJ(Mat mat,NormType type,PetscReal *nrm) 738d6de1c52SSatish Balay { 739d6de1c52SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 740d6de1c52SSatish Balay Mat_SeqBAIJ *amat = (Mat_SeqBAIJ*)baij->A->data,*bmat = (Mat_SeqBAIJ*)baij->B->data; 741dfbe8321SBarry Smith PetscErrorCode ierr; 742899cda47SBarry Smith PetscInt i,j,bs2=baij->bs2,bs=baij->A->rmap.bs,nz,row,col; 743329f5518SBarry Smith PetscReal sum = 0.0; 7443eda8832SBarry Smith MatScalar *v; 745d6de1c52SSatish Balay 746d64ed03dSBarry Smith PetscFunctionBegin; 747d6de1c52SSatish Balay if (baij->size == 1) { 748064f8208SBarry Smith ierr = MatNorm(baij->A,type,nrm);CHKERRQ(ierr); 749d6de1c52SSatish Balay } else { 750d6de1c52SSatish Balay if (type == NORM_FROBENIUS) { 751d6de1c52SSatish Balay v = amat->a; 7528a62d963SHong Zhang nz = amat->nz*bs2; 7538a62d963SHong Zhang for (i=0; i<nz; i++) { 754aa482453SBarry Smith #if defined(PETSC_USE_COMPLEX) 755329f5518SBarry Smith sum += PetscRealPart(PetscConj(*v)*(*v)); v++; 756d6de1c52SSatish Balay #else 757d6de1c52SSatish Balay sum += (*v)*(*v); v++; 758d6de1c52SSatish Balay #endif 759d6de1c52SSatish Balay } 760d6de1c52SSatish Balay v = bmat->a; 7618a62d963SHong Zhang nz = bmat->nz*bs2; 7628a62d963SHong Zhang for (i=0; i<nz; i++) { 763aa482453SBarry Smith #if defined(PETSC_USE_COMPLEX) 764329f5518SBarry Smith sum += PetscRealPart(PetscConj(*v)*(*v)); v++; 765d6de1c52SSatish Balay #else 766d6de1c52SSatish Balay sum += (*v)*(*v); v++; 767d6de1c52SSatish Balay #endif 768d6de1c52SSatish Balay } 769064f8208SBarry Smith ierr = MPI_Allreduce(&sum,nrm,1,MPIU_REAL,MPI_SUM,mat->comm);CHKERRQ(ierr); 770064f8208SBarry Smith *nrm = sqrt(*nrm); 7718a62d963SHong Zhang } else if (type == NORM_1) { /* max column sum */ 7728a62d963SHong Zhang PetscReal *tmp,*tmp2; 773899cda47SBarry Smith PetscInt *jj,*garray=baij->garray,cstart=baij->rstartbs; 774899cda47SBarry Smith ierr = PetscMalloc((2*mat->cmap.N+1)*sizeof(PetscReal),&tmp);CHKERRQ(ierr); 775899cda47SBarry Smith tmp2 = tmp + mat->cmap.N; 776899cda47SBarry Smith ierr = PetscMemzero(tmp,mat->cmap.N*sizeof(PetscReal));CHKERRQ(ierr); 7778a62d963SHong Zhang v = amat->a; jj = amat->j; 7788a62d963SHong Zhang for (i=0; i<amat->nz; i++) { 7798a62d963SHong Zhang for (j=0; j<bs; j++){ 7808a62d963SHong Zhang col = bs*(cstart + *jj) + j; /* column index */ 7818a62d963SHong Zhang for (row=0; row<bs; row++){ 7828a62d963SHong Zhang tmp[col] += PetscAbsScalar(*v); v++; 7838a62d963SHong Zhang } 7848a62d963SHong Zhang } 7858a62d963SHong Zhang jj++; 7868a62d963SHong Zhang } 7878a62d963SHong Zhang v = bmat->a; jj = bmat->j; 7888a62d963SHong Zhang for (i=0; i<bmat->nz; i++) { 7898a62d963SHong Zhang for (j=0; j<bs; j++){ 7908a62d963SHong Zhang col = bs*garray[*jj] + j; 7918a62d963SHong Zhang for (row=0; row<bs; row++){ 7928a62d963SHong Zhang tmp[col] += PetscAbsScalar(*v); v++; 7938a62d963SHong Zhang } 7948a62d963SHong Zhang } 7958a62d963SHong Zhang jj++; 7968a62d963SHong Zhang } 797899cda47SBarry Smith ierr = MPI_Allreduce(tmp,tmp2,mat->cmap.N,MPIU_REAL,MPI_SUM,mat->comm);CHKERRQ(ierr); 7988a62d963SHong Zhang *nrm = 0.0; 799899cda47SBarry Smith for (j=0; j<mat->cmap.N; j++) { 8008a62d963SHong Zhang if (tmp2[j] > *nrm) *nrm = tmp2[j]; 8018a62d963SHong Zhang } 8028a62d963SHong Zhang ierr = PetscFree(tmp);CHKERRQ(ierr); 8038a62d963SHong Zhang } else if (type == NORM_INFINITY) { /* max row sum */ 804577dd1f9SKris Buschelman PetscReal *sums; 805577dd1f9SKris Buschelman ierr = PetscMalloc(bs*sizeof(PetscReal),&sums);CHKERRQ(ierr) 8068a62d963SHong Zhang sum = 0.0; 8078a62d963SHong Zhang for (j=0; j<amat->mbs; j++) { 8088a62d963SHong Zhang for (row=0; row<bs; row++) sums[row] = 0.0; 8098a62d963SHong Zhang v = amat->a + bs2*amat->i[j]; 8108a62d963SHong Zhang nz = amat->i[j+1]-amat->i[j]; 8118a62d963SHong Zhang for (i=0; i<nz; i++) { 8128a62d963SHong Zhang for (col=0; col<bs; col++){ 8138a62d963SHong Zhang for (row=0; row<bs; row++){ 8148a62d963SHong Zhang sums[row] += PetscAbsScalar(*v); v++; 8158a62d963SHong Zhang } 8168a62d963SHong Zhang } 8178a62d963SHong Zhang } 8188a62d963SHong Zhang v = bmat->a + bs2*bmat->i[j]; 8198a62d963SHong Zhang nz = bmat->i[j+1]-bmat->i[j]; 8208a62d963SHong Zhang for (i=0; i<nz; i++) { 8218a62d963SHong Zhang for (col=0; col<bs; col++){ 8228a62d963SHong Zhang for (row=0; row<bs; row++){ 8238a62d963SHong Zhang sums[row] += PetscAbsScalar(*v); v++; 8248a62d963SHong Zhang } 8258a62d963SHong Zhang } 8268a62d963SHong Zhang } 8278a62d963SHong Zhang for (row=0; row<bs; row++){ 8288a62d963SHong Zhang if (sums[row] > sum) sum = sums[row]; 8298a62d963SHong Zhang } 8308a62d963SHong Zhang } 8318a62d963SHong Zhang ierr = MPI_Allreduce(&sum,nrm,1,MPIU_REAL,MPI_MAX,mat->comm);CHKERRQ(ierr); 832577dd1f9SKris Buschelman ierr = PetscFree(sums);CHKERRQ(ierr); 833d64ed03dSBarry Smith } else { 83429bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"No support for this norm yet"); 835d6de1c52SSatish Balay } 836d64ed03dSBarry Smith } 8373a40ed3dSBarry Smith PetscFunctionReturn(0); 838d6de1c52SSatish Balay } 83957b952d6SSatish Balay 840fef45726SSatish Balay /* 841fef45726SSatish Balay Creates the hash table, and sets the table 842fef45726SSatish Balay This table is created only once. 843fef45726SSatish Balay If new entried need to be added to the matrix 844fef45726SSatish Balay then the hash table has to be destroyed and 845fef45726SSatish Balay recreated. 846fef45726SSatish Balay */ 8474a2ae208SSatish Balay #undef __FUNCT__ 8484a2ae208SSatish Balay #define __FUNCT__ "MatCreateHashTable_MPIBAIJ_Private" 849dfbe8321SBarry Smith PetscErrorCode MatCreateHashTable_MPIBAIJ_Private(Mat mat,PetscReal factor) 850596b8d2eSBarry Smith { 851596b8d2eSBarry Smith Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 852596b8d2eSBarry Smith Mat A = baij->A,B=baij->B; 853596b8d2eSBarry Smith Mat_SeqBAIJ *a=(Mat_SeqBAIJ *)A->data,*b=(Mat_SeqBAIJ *)B->data; 854b24ad042SBarry Smith PetscInt i,j,k,nz=a->nz+b->nz,h1,*ai=a->i,*aj=a->j,*bi=b->i,*bj=b->j; 8556849ba73SBarry Smith PetscErrorCode ierr; 856899cda47SBarry Smith PetscInt size,bs2=baij->bs2,rstart=baij->rstartbs; 857899cda47SBarry Smith PetscInt cstart=baij->cstartbs,*garray=baij->garray,row,col,Nbs=baij->Nbs; 858b24ad042SBarry Smith PetscInt *HT,key; 8593eda8832SBarry Smith MatScalar **HD; 860329f5518SBarry Smith PetscReal tmp; 8616cf91177SBarry Smith #if defined(PETSC_USE_INFO) 862b24ad042SBarry Smith PetscInt ct=0,max=0; 8634a15367fSSatish Balay #endif 864fef45726SSatish Balay 865d64ed03dSBarry Smith PetscFunctionBegin; 866b24ad042SBarry Smith baij->ht_size=(PetscInt)(factor*nz); 8670bdbc534SSatish Balay size = baij->ht_size; 868fef45726SSatish Balay 8690bdbc534SSatish Balay if (baij->ht) { 8700bdbc534SSatish Balay PetscFunctionReturn(0); 871596b8d2eSBarry Smith } 8720bdbc534SSatish Balay 873fef45726SSatish Balay /* Allocate Memory for Hash Table */ 874b24ad042SBarry Smith ierr = PetscMalloc((size)*(sizeof(PetscInt)+sizeof(MatScalar*))+1,&baij->hd);CHKERRQ(ierr); 875b24ad042SBarry Smith baij->ht = (PetscInt*)(baij->hd + size); 876b9e4cc15SSatish Balay HD = baij->hd; 877a07cd24cSSatish Balay HT = baij->ht; 878b9e4cc15SSatish Balay 879b9e4cc15SSatish Balay 880b24ad042SBarry Smith ierr = PetscMemzero(HD,size*(sizeof(PetscInt)+sizeof(PetscScalar*)));CHKERRQ(ierr); 8810bdbc534SSatish Balay 882596b8d2eSBarry Smith 883596b8d2eSBarry Smith /* Loop Over A */ 8840bdbc534SSatish Balay for (i=0; i<a->mbs; i++) { 885596b8d2eSBarry Smith for (j=ai[i]; j<ai[i+1]; j++) { 8860bdbc534SSatish Balay row = i+rstart; 8870bdbc534SSatish Balay col = aj[j]+cstart; 888596b8d2eSBarry Smith 889187ce0cbSSatish Balay key = row*Nbs + col + 1; 890c2760754SSatish Balay h1 = HASH(size,key,tmp); 8910bdbc534SSatish Balay for (k=0; k<size; k++){ 892958c9bccSBarry Smith if (!HT[(h1+k)%size]) { 8930bdbc534SSatish Balay HT[(h1+k)%size] = key; 8940bdbc534SSatish Balay HD[(h1+k)%size] = a->a + j*bs2; 895596b8d2eSBarry Smith break; 8966cf91177SBarry Smith #if defined(PETSC_USE_INFO) 897187ce0cbSSatish Balay } else { 898187ce0cbSSatish Balay ct++; 899187ce0cbSSatish Balay #endif 900596b8d2eSBarry Smith } 901187ce0cbSSatish Balay } 9026cf91177SBarry Smith #if defined(PETSC_USE_INFO) 903187ce0cbSSatish Balay if (k> max) max = k; 904187ce0cbSSatish Balay #endif 905596b8d2eSBarry Smith } 906596b8d2eSBarry Smith } 907596b8d2eSBarry Smith /* Loop Over B */ 9080bdbc534SSatish Balay for (i=0; i<b->mbs; i++) { 909596b8d2eSBarry Smith for (j=bi[i]; j<bi[i+1]; j++) { 9100bdbc534SSatish Balay row = i+rstart; 9110bdbc534SSatish Balay col = garray[bj[j]]; 912187ce0cbSSatish Balay key = row*Nbs + col + 1; 913c2760754SSatish Balay h1 = HASH(size,key,tmp); 9140bdbc534SSatish Balay for (k=0; k<size; k++){ 915958c9bccSBarry Smith if (!HT[(h1+k)%size]) { 9160bdbc534SSatish Balay HT[(h1+k)%size] = key; 9170bdbc534SSatish Balay HD[(h1+k)%size] = b->a + j*bs2; 918596b8d2eSBarry Smith break; 9196cf91177SBarry Smith #if defined(PETSC_USE_INFO) 920187ce0cbSSatish Balay } else { 921187ce0cbSSatish Balay ct++; 922187ce0cbSSatish Balay #endif 923596b8d2eSBarry Smith } 924187ce0cbSSatish Balay } 9256cf91177SBarry Smith #if defined(PETSC_USE_INFO) 926187ce0cbSSatish Balay if (k> max) max = k; 927187ce0cbSSatish Balay #endif 928596b8d2eSBarry Smith } 929596b8d2eSBarry Smith } 930596b8d2eSBarry Smith 931596b8d2eSBarry Smith /* Print Summary */ 9326cf91177SBarry Smith #if defined(PETSC_USE_INFO) 933c38d4ed2SBarry Smith for (i=0,j=0; i<size; i++) { 934596b8d2eSBarry Smith if (HT[i]) {j++;} 935c38d4ed2SBarry Smith } 936ae15b995SBarry Smith ierr = PetscInfo2(0,"Average Search = %5.2f,max search = %D\n",(!j)? 0.0:((PetscReal)(ct+j))/j,max);CHKERRQ(ierr); 937187ce0cbSSatish Balay #endif 9383a40ed3dSBarry Smith PetscFunctionReturn(0); 939596b8d2eSBarry Smith } 94057b952d6SSatish Balay 9414a2ae208SSatish Balay #undef __FUNCT__ 9424a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyBegin_MPIBAIJ" 943dfbe8321SBarry Smith PetscErrorCode MatAssemblyBegin_MPIBAIJ(Mat mat,MatAssemblyType mode) 944bbb85fb3SSatish Balay { 945bbb85fb3SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 946dfbe8321SBarry Smith PetscErrorCode ierr; 947b24ad042SBarry Smith PetscInt nstash,reallocs; 948bbb85fb3SSatish Balay InsertMode addv; 949bbb85fb3SSatish Balay 950bbb85fb3SSatish Balay PetscFunctionBegin; 951bbb85fb3SSatish Balay if (baij->donotstash) { 952bbb85fb3SSatish Balay PetscFunctionReturn(0); 953bbb85fb3SSatish Balay } 954bbb85fb3SSatish Balay 955bbb85fb3SSatish Balay /* make sure all processors are either in INSERTMODE or ADDMODE */ 956bbb85fb3SSatish Balay ierr = MPI_Allreduce(&mat->insertmode,&addv,1,MPI_INT,MPI_BOR,mat->comm);CHKERRQ(ierr); 957bbb85fb3SSatish Balay if (addv == (ADD_VALUES|INSERT_VALUES)) { 95829bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Some processors inserted others added"); 959bbb85fb3SSatish Balay } 960bbb85fb3SSatish Balay mat->insertmode = addv; /* in case this processor had no cache */ 961bbb85fb3SSatish Balay 962899cda47SBarry Smith ierr = MatStashScatterBegin_Private(&mat->stash,mat->rmap.range);CHKERRQ(ierr); 963899cda47SBarry Smith ierr = MatStashScatterBegin_Private(&mat->bstash,baij->rangebs);CHKERRQ(ierr); 9648798bf22SSatish Balay ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr); 965ae15b995SBarry Smith ierr = PetscInfo2(0,"Stash has %D entries,uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr); 96646680499SSatish Balay ierr = MatStashGetInfo_Private(&mat->bstash,&nstash,&reallocs);CHKERRQ(ierr); 967ae15b995SBarry Smith ierr = PetscInfo2(0,"Block-Stash has %D entries, uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr); 968bbb85fb3SSatish Balay PetscFunctionReturn(0); 969bbb85fb3SSatish Balay } 970bbb85fb3SSatish Balay 9714a2ae208SSatish Balay #undef __FUNCT__ 9724a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyEnd_MPIBAIJ" 973dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_MPIBAIJ(Mat mat,MatAssemblyType mode) 974bbb85fb3SSatish Balay { 975bbb85fb3SSatish Balay Mat_MPIBAIJ *baij=(Mat_MPIBAIJ*)mat->data; 97691c97fd4SSatish Balay Mat_SeqBAIJ *a=(Mat_SeqBAIJ*)baij->A->data; 9776849ba73SBarry Smith PetscErrorCode ierr; 978b24ad042SBarry Smith PetscInt i,j,rstart,ncols,flg,bs2=baij->bs2; 979b24ad042SBarry Smith PetscInt *row,*col,other_disassembled; 9807c922b88SBarry Smith PetscTruth r1,r2,r3; 9813eda8832SBarry Smith MatScalar *val; 982bbb85fb3SSatish Balay InsertMode addv = mat->insertmode; 983b24ad042SBarry Smith PetscMPIInt n; 984bbb85fb3SSatish Balay 98591c97fd4SSatish Balay /* do not use 'b=(Mat_SeqBAIJ*)baij->B->data' as B can be reset in disassembly */ 986bbb85fb3SSatish Balay PetscFunctionBegin; 987bbb85fb3SSatish Balay if (!baij->donotstash) { 988a2d1c673SSatish Balay while (1) { 9898798bf22SSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 990a2d1c673SSatish Balay if (!flg) break; 991a2d1c673SSatish Balay 992bbb85fb3SSatish Balay for (i=0; i<n;) { 993bbb85fb3SSatish Balay /* Now identify the consecutive vals belonging to the same row */ 994bbb85fb3SSatish Balay for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; } 995bbb85fb3SSatish Balay if (j < n) ncols = j-i; 996bbb85fb3SSatish Balay else ncols = n-i; 997bbb85fb3SSatish Balay /* Now assemble all these values with a single function call */ 99893fea6afSBarry Smith ierr = MatSetValues_MPIBAIJ_MatScalar(mat,1,row+i,ncols,col+i,val+i,addv);CHKERRQ(ierr); 999bbb85fb3SSatish Balay i = j; 1000bbb85fb3SSatish Balay } 1001bbb85fb3SSatish Balay } 10028798bf22SSatish Balay ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr); 1003a2d1c673SSatish Balay /* Now process the block-stash. Since the values are stashed column-oriented, 1004a2d1c673SSatish Balay set the roworiented flag to column oriented, and after MatSetValues() 1005a2d1c673SSatish Balay restore the original flags */ 1006a2d1c673SSatish Balay r1 = baij->roworiented; 1007a2d1c673SSatish Balay r2 = a->roworiented; 100891c97fd4SSatish Balay r3 = ((Mat_SeqBAIJ*)baij->B->data)->roworiented; 10097c922b88SBarry Smith baij->roworiented = PETSC_FALSE; 10107c922b88SBarry Smith a->roworiented = PETSC_FALSE; 101191c97fd4SSatish Balay (((Mat_SeqBAIJ*)baij->B->data))->roworiented = PETSC_FALSE; /* b->roworiented */ 1012a2d1c673SSatish Balay while (1) { 10138798bf22SSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->bstash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 1014a2d1c673SSatish Balay if (!flg) break; 1015a2d1c673SSatish Balay 1016a2d1c673SSatish Balay for (i=0; i<n;) { 1017a2d1c673SSatish Balay /* Now identify the consecutive vals belonging to the same row */ 1018a2d1c673SSatish Balay for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; } 1019a2d1c673SSatish Balay if (j < n) ncols = j-i; 1020a2d1c673SSatish Balay else ncols = n-i; 102193fea6afSBarry Smith ierr = MatSetValuesBlocked_MPIBAIJ_MatScalar(mat,1,row+i,ncols,col+i,val+i*bs2,addv);CHKERRQ(ierr); 1022a2d1c673SSatish Balay i = j; 1023a2d1c673SSatish Balay } 1024a2d1c673SSatish Balay } 10258798bf22SSatish Balay ierr = MatStashScatterEnd_Private(&mat->bstash);CHKERRQ(ierr); 1026a2d1c673SSatish Balay baij->roworiented = r1; 1027a2d1c673SSatish Balay a->roworiented = r2; 102891c97fd4SSatish Balay ((Mat_SeqBAIJ*)baij->B->data)->roworiented = r3; /* b->roworiented */ 1029bbb85fb3SSatish Balay } 1030bbb85fb3SSatish Balay 1031bbb85fb3SSatish Balay ierr = MatAssemblyBegin(baij->A,mode);CHKERRQ(ierr); 1032bbb85fb3SSatish Balay ierr = MatAssemblyEnd(baij->A,mode);CHKERRQ(ierr); 1033bbb85fb3SSatish Balay 1034bbb85fb3SSatish Balay /* determine if any processor has disassembled, if so we must 1035bbb85fb3SSatish Balay also disassemble ourselfs, in order that we may reassemble. */ 1036bbb85fb3SSatish Balay /* 1037bbb85fb3SSatish Balay if nonzero structure of submatrix B cannot change then we know that 1038bbb85fb3SSatish Balay no processor disassembled thus we can skip this stuff 1039bbb85fb3SSatish Balay */ 1040bbb85fb3SSatish Balay if (!((Mat_SeqBAIJ*)baij->B->data)->nonew) { 1041bbb85fb3SSatish Balay ierr = MPI_Allreduce(&mat->was_assembled,&other_disassembled,1,MPI_INT,MPI_PROD,mat->comm);CHKERRQ(ierr); 1042bbb85fb3SSatish Balay if (mat->was_assembled && !other_disassembled) { 1043bbb85fb3SSatish Balay ierr = DisAssemble_MPIBAIJ(mat);CHKERRQ(ierr); 1044bbb85fb3SSatish Balay } 1045bbb85fb3SSatish Balay } 1046bbb85fb3SSatish Balay 1047bbb85fb3SSatish Balay if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) { 1048bbb85fb3SSatish Balay ierr = MatSetUpMultiply_MPIBAIJ(mat);CHKERRQ(ierr); 1049bbb85fb3SSatish Balay } 105091c97fd4SSatish Balay ((Mat_SeqBAIJ*)baij->B->data)->compressedrow.use = PETSC_TRUE; /* b->compressedrow.use */ 1051bbb85fb3SSatish Balay ierr = MatAssemblyBegin(baij->B,mode);CHKERRQ(ierr); 1052bbb85fb3SSatish Balay ierr = MatAssemblyEnd(baij->B,mode);CHKERRQ(ierr); 1053bbb85fb3SSatish Balay 10546cf91177SBarry Smith #if defined(PETSC_USE_INFO) 1055bbb85fb3SSatish Balay if (baij->ht && mode== MAT_FINAL_ASSEMBLY) { 1056ae15b995SBarry Smith ierr = PetscInfo1(0,"Average Hash Table Search in MatSetValues = %5.2f\n",((PetscReal)baij->ht_total_ct)/baij->ht_insert_ct);CHKERRQ(ierr); 1057bbb85fb3SSatish Balay baij->ht_total_ct = 0; 1058bbb85fb3SSatish Balay baij->ht_insert_ct = 0; 1059bbb85fb3SSatish Balay } 1060bbb85fb3SSatish Balay #endif 1061bbb85fb3SSatish Balay if (baij->ht_flag && !baij->ht && mode == MAT_FINAL_ASSEMBLY) { 1062bbb85fb3SSatish Balay ierr = MatCreateHashTable_MPIBAIJ_Private(mat,baij->ht_fact);CHKERRQ(ierr); 1063bbb85fb3SSatish Balay mat->ops->setvalues = MatSetValues_MPIBAIJ_HT; 1064bbb85fb3SSatish Balay mat->ops->setvaluesblocked = MatSetValuesBlocked_MPIBAIJ_HT; 1065bbb85fb3SSatish Balay } 1066bbb85fb3SSatish Balay 1067606d414cSSatish Balay ierr = PetscFree(baij->rowvalues);CHKERRQ(ierr); 1068606d414cSSatish Balay baij->rowvalues = 0; 1069bbb85fb3SSatish Balay PetscFunctionReturn(0); 1070bbb85fb3SSatish Balay } 107157b952d6SSatish Balay 10724a2ae208SSatish Balay #undef __FUNCT__ 10734a2ae208SSatish Balay #define __FUNCT__ "MatView_MPIBAIJ_ASCIIorDraworSocket" 10746849ba73SBarry Smith static PetscErrorCode MatView_MPIBAIJ_ASCIIorDraworSocket(Mat mat,PetscViewer viewer) 107557b952d6SSatish Balay { 107657b952d6SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 1077dfbe8321SBarry Smith PetscErrorCode ierr; 1078b24ad042SBarry Smith PetscMPIInt size = baij->size,rank = baij->rank; 1079899cda47SBarry Smith PetscInt bs = mat->rmap.bs; 108032077d6dSBarry Smith PetscTruth iascii,isdraw; 1081b0a32e0cSBarry Smith PetscViewer sviewer; 1082f3ef73ceSBarry Smith PetscViewerFormat format; 108357b952d6SSatish Balay 1084d64ed03dSBarry Smith PetscFunctionBegin; 108532077d6dSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&iascii);CHKERRQ(ierr); 1086fb9695e5SSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr); 108732077d6dSBarry Smith if (iascii) { 1088b0a32e0cSBarry Smith ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr); 1089456192e2SBarry Smith if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 10904e220ebcSLois Curfman McInnes MatInfo info; 1091d132466eSBarry Smith ierr = MPI_Comm_rank(mat->comm,&rank);CHKERRQ(ierr); 1092d41123aaSBarry Smith ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr); 109377431f27SBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Local rows %D nz %D nz alloced %D bs %D mem %D\n", 1094899cda47SBarry Smith rank,mat->rmap.N,(PetscInt)info.nz_used*bs,(PetscInt)info.nz_allocated*bs, 1095899cda47SBarry Smith mat->rmap.bs,(PetscInt)info.memory);CHKERRQ(ierr); 1096d132466eSBarry Smith ierr = MatGetInfo(baij->A,MAT_LOCAL,&info);CHKERRQ(ierr); 109777431f27SBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] on-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used*bs);CHKERRQ(ierr); 1098d132466eSBarry Smith ierr = MatGetInfo(baij->B,MAT_LOCAL,&info);CHKERRQ(ierr); 109977431f27SBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] off-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used*bs);CHKERRQ(ierr); 1100b0a32e0cSBarry Smith ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 110157b952d6SSatish Balay ierr = VecScatterView(baij->Mvctx,viewer);CHKERRQ(ierr); 11023a40ed3dSBarry Smith PetscFunctionReturn(0); 1103fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_INFO) { 110477431f27SBarry Smith ierr = PetscViewerASCIIPrintf(viewer," block size is %D\n",bs);CHKERRQ(ierr); 11053a40ed3dSBarry Smith PetscFunctionReturn(0); 110604929863SHong Zhang } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) { 110704929863SHong Zhang PetscFunctionReturn(0); 110857b952d6SSatish Balay } 110957b952d6SSatish Balay } 111057b952d6SSatish Balay 11110f5bd95cSBarry Smith if (isdraw) { 1112b0a32e0cSBarry Smith PetscDraw draw; 111357b952d6SSatish Balay PetscTruth isnull; 1114b0a32e0cSBarry Smith ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr); 1115b0a32e0cSBarry Smith ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); if (isnull) PetscFunctionReturn(0); 111657b952d6SSatish Balay } 111757b952d6SSatish Balay 111857b952d6SSatish Balay if (size == 1) { 1119873048abSBarry Smith ierr = PetscObjectSetName((PetscObject)baij->A,mat->name);CHKERRQ(ierr); 112057b952d6SSatish Balay ierr = MatView(baij->A,viewer);CHKERRQ(ierr); 1121d64ed03dSBarry Smith } else { 112257b952d6SSatish Balay /* assemble the entire matrix onto first processor. */ 112357b952d6SSatish Balay Mat A; 112457b952d6SSatish Balay Mat_SeqBAIJ *Aloc; 1125899cda47SBarry Smith PetscInt M = mat->rmap.N,N = mat->cmap.N,*ai,*aj,col,i,j,k,*rvals,mbs = baij->mbs; 11263eda8832SBarry Smith MatScalar *a; 112757b952d6SSatish Balay 1128f204ca49SKris Buschelman /* Here we are creating a temporary matrix, so will assume MPIBAIJ is acceptable */ 1129f204ca49SKris Buschelman /* Perhaps this should be the type of mat? */ 1130f69a0ea3SMatthew Knepley ierr = MatCreate(mat->comm,&A);CHKERRQ(ierr); 113157b952d6SSatish Balay if (!rank) { 1132f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,M,N,M,N);CHKERRQ(ierr); 1133d64ed03dSBarry Smith } else { 1134f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,0,0,M,N);CHKERRQ(ierr); 113557b952d6SSatish Balay } 1136f204ca49SKris Buschelman ierr = MatSetType(A,MATMPIBAIJ);CHKERRQ(ierr); 1137899cda47SBarry Smith ierr = MatMPIBAIJSetPreallocation(A,mat->rmap.bs,0,PETSC_NULL,0,PETSC_NULL);CHKERRQ(ierr); 113852e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,A);CHKERRQ(ierr); 113957b952d6SSatish Balay 114057b952d6SSatish Balay /* copy over the A part */ 114157b952d6SSatish Balay Aloc = (Mat_SeqBAIJ*)baij->A->data; 114257b952d6SSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 1143b24ad042SBarry Smith ierr = PetscMalloc(bs*sizeof(PetscInt),&rvals);CHKERRQ(ierr); 114457b952d6SSatish Balay 114557b952d6SSatish Balay for (i=0; i<mbs; i++) { 1146899cda47SBarry Smith rvals[0] = bs*(baij->rstartbs + i); 114757b952d6SSatish Balay for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; } 114857b952d6SSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 1149899cda47SBarry Smith col = (baij->cstartbs+aj[j])*bs; 115057b952d6SSatish Balay for (k=0; k<bs; k++) { 115193fea6afSBarry Smith ierr = MatSetValues_MPIBAIJ_MatScalar(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 1152cee3aa6bSSatish Balay col++; a += bs; 115357b952d6SSatish Balay } 115457b952d6SSatish Balay } 115557b952d6SSatish Balay } 115657b952d6SSatish Balay /* copy over the B part */ 115757b952d6SSatish Balay Aloc = (Mat_SeqBAIJ*)baij->B->data; 115857b952d6SSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 115957b952d6SSatish Balay for (i=0; i<mbs; i++) { 1160899cda47SBarry Smith rvals[0] = bs*(baij->rstartbs + i); 116157b952d6SSatish Balay for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; } 116257b952d6SSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 116357b952d6SSatish Balay col = baij->garray[aj[j]]*bs; 116457b952d6SSatish Balay for (k=0; k<bs; k++) { 116593fea6afSBarry Smith ierr = MatSetValues_MPIBAIJ_MatScalar(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 1166cee3aa6bSSatish Balay col++; a += bs; 116757b952d6SSatish Balay } 116857b952d6SSatish Balay } 116957b952d6SSatish Balay } 1170606d414cSSatish Balay ierr = PetscFree(rvals);CHKERRQ(ierr); 11716d4a8577SBarry Smith ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 11726d4a8577SBarry Smith ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 117355843e3eSBarry Smith /* 117455843e3eSBarry Smith Everyone has to call to draw the matrix since the graphics waits are 1175b0a32e0cSBarry Smith synchronized across all processors that share the PetscDraw object 117655843e3eSBarry Smith */ 1177b0a32e0cSBarry Smith ierr = PetscViewerGetSingleton(viewer,&sviewer);CHKERRQ(ierr); 1178f14a1c24SBarry Smith if (!rank) { 1179e36acaf3SBarry Smith ierr = PetscObjectSetName((PetscObject)((Mat_MPIBAIJ*)(A->data))->A,mat->name);CHKERRQ(ierr); 11806831982aSBarry Smith ierr = MatView(((Mat_MPIBAIJ*)(A->data))->A,sviewer);CHKERRQ(ierr); 118157b952d6SSatish Balay } 1182b0a32e0cSBarry Smith ierr = PetscViewerRestoreSingleton(viewer,&sviewer);CHKERRQ(ierr); 118357b952d6SSatish Balay ierr = MatDestroy(A);CHKERRQ(ierr); 118457b952d6SSatish Balay } 11853a40ed3dSBarry Smith PetscFunctionReturn(0); 118657b952d6SSatish Balay } 118757b952d6SSatish Balay 11884a2ae208SSatish Balay #undef __FUNCT__ 11894a2ae208SSatish Balay #define __FUNCT__ "MatView_MPIBAIJ" 1190dfbe8321SBarry Smith PetscErrorCode MatView_MPIBAIJ(Mat mat,PetscViewer viewer) 119157b952d6SSatish Balay { 1192dfbe8321SBarry Smith PetscErrorCode ierr; 119332077d6dSBarry Smith PetscTruth iascii,isdraw,issocket,isbinary; 119457b952d6SSatish Balay 1195d64ed03dSBarry Smith PetscFunctionBegin; 119632077d6dSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&iascii);CHKERRQ(ierr); 1197fb9695e5SSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr); 1198b0a32e0cSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_SOCKET,&issocket);CHKERRQ(ierr); 1199fb9695e5SSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_BINARY,&isbinary);CHKERRQ(ierr); 120032077d6dSBarry Smith if (iascii || isdraw || issocket || isbinary) { 12017b2a1423SBarry Smith ierr = MatView_MPIBAIJ_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr); 12025cd90555SBarry Smith } else { 120379a5c55eSBarry Smith SETERRQ1(PETSC_ERR_SUP,"Viewer type %s not supported by MPIBAIJ matrices",((PetscObject)viewer)->type_name); 120457b952d6SSatish Balay } 12053a40ed3dSBarry Smith PetscFunctionReturn(0); 120657b952d6SSatish Balay } 120757b952d6SSatish Balay 12084a2ae208SSatish Balay #undef __FUNCT__ 12094a2ae208SSatish Balay #define __FUNCT__ "MatDestroy_MPIBAIJ" 1210dfbe8321SBarry Smith PetscErrorCode MatDestroy_MPIBAIJ(Mat mat) 121179bdfe76SSatish Balay { 121279bdfe76SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 1213dfbe8321SBarry Smith PetscErrorCode ierr; 121479bdfe76SSatish Balay 1215d64ed03dSBarry Smith PetscFunctionBegin; 1216aa482453SBarry Smith #if defined(PETSC_USE_LOG) 1217899cda47SBarry Smith PetscLogObjectState((PetscObject)mat,"Rows=%D,Cols=%D",mat->rmap.N,mat->cmap.N); 121879bdfe76SSatish Balay #endif 12198798bf22SSatish Balay ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr); 12208798bf22SSatish Balay ierr = MatStashDestroy_Private(&mat->bstash);CHKERRQ(ierr); 122179bdfe76SSatish Balay ierr = MatDestroy(baij->A);CHKERRQ(ierr); 122279bdfe76SSatish Balay ierr = MatDestroy(baij->B);CHKERRQ(ierr); 1223aa482453SBarry Smith #if defined (PETSC_USE_CTABLE) 12240f5bd95cSBarry Smith if (baij->colmap) {ierr = PetscTableDelete(baij->colmap);CHKERRQ(ierr);} 122548e59246SSatish Balay #else 122605b42c5fSBarry Smith ierr = PetscFree(baij->colmap);CHKERRQ(ierr); 122748e59246SSatish Balay #endif 122805b42c5fSBarry Smith ierr = PetscFree(baij->garray);CHKERRQ(ierr); 1229606d414cSSatish Balay if (baij->lvec) {ierr = VecDestroy(baij->lvec);CHKERRQ(ierr);} 1230606d414cSSatish Balay if (baij->Mvctx) {ierr = VecScatterDestroy(baij->Mvctx);CHKERRQ(ierr);} 123105b42c5fSBarry Smith ierr = PetscFree(baij->rowvalues);CHKERRQ(ierr); 123205b42c5fSBarry Smith ierr = PetscFree(baij->barray);CHKERRQ(ierr); 123305b42c5fSBarry Smith ierr = PetscFree(baij->hd);CHKERRQ(ierr); 12346fa18ffdSBarry Smith #if defined(PETSC_USE_MAT_SINGLE) 123505b42c5fSBarry Smith ierr = PetscFree(baij->setvaluescopy);CHKERRQ(ierr); 12366fa18ffdSBarry Smith #endif 1237899cda47SBarry Smith ierr = PetscFree(baij->rangebs);CHKERRQ(ierr); 1238606d414cSSatish Balay ierr = PetscFree(baij);CHKERRQ(ierr); 1239901853e0SKris Buschelman 1240901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatStoreValues_C","",PETSC_NULL);CHKERRQ(ierr); 1241901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatRetrieveValues_C","",PETSC_NULL);CHKERRQ(ierr); 1242901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatGetDiagonalBlock_C","",PETSC_NULL);CHKERRQ(ierr); 1243901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPIBAIJSetPreallocation_C","",PETSC_NULL);CHKERRQ(ierr); 1244aac34f13SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPIBAIJSetPreallocationCSR_C","",PETSC_NULL);CHKERRQ(ierr); 1245901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDiagonalScaleLocal_C","",PETSC_NULL);CHKERRQ(ierr); 1246901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatSetHashTableFactor_C","",PETSC_NULL);CHKERRQ(ierr); 12473a40ed3dSBarry Smith PetscFunctionReturn(0); 124879bdfe76SSatish Balay } 124979bdfe76SSatish Balay 12504a2ae208SSatish Balay #undef __FUNCT__ 12514a2ae208SSatish Balay #define __FUNCT__ "MatMult_MPIBAIJ" 1252dfbe8321SBarry Smith PetscErrorCode MatMult_MPIBAIJ(Mat A,Vec xx,Vec yy) 1253cee3aa6bSSatish Balay { 1254cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1255dfbe8321SBarry Smith PetscErrorCode ierr; 1256b24ad042SBarry Smith PetscInt nt; 1257cee3aa6bSSatish Balay 1258d64ed03dSBarry Smith PetscFunctionBegin; 1259e1311b90SBarry Smith ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr); 1260899cda47SBarry Smith if (nt != A->cmap.n) { 126129bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx"); 126247b4a8eaSLois Curfman McInnes } 1263e1311b90SBarry Smith ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr); 1264899cda47SBarry Smith if (nt != A->rmap.n) { 126529bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible parition of A and yy"); 126647b4a8eaSLois Curfman McInnes } 126743a90d84SBarry Smith ierr = VecScatterBegin(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr); 1268f830108cSBarry Smith ierr = (*a->A->ops->mult)(a->A,xx,yy);CHKERRQ(ierr); 126943a90d84SBarry Smith ierr = VecScatterEnd(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr); 1270f830108cSBarry Smith ierr = (*a->B->ops->multadd)(a->B,a->lvec,yy,yy);CHKERRQ(ierr); 12713a40ed3dSBarry Smith PetscFunctionReturn(0); 1272cee3aa6bSSatish Balay } 1273cee3aa6bSSatish Balay 12744a2ae208SSatish Balay #undef __FUNCT__ 12754a2ae208SSatish Balay #define __FUNCT__ "MatMultAdd_MPIBAIJ" 1276dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPIBAIJ(Mat A,Vec xx,Vec yy,Vec zz) 1277cee3aa6bSSatish Balay { 1278cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1279dfbe8321SBarry Smith PetscErrorCode ierr; 1280d64ed03dSBarry Smith 1281d64ed03dSBarry Smith PetscFunctionBegin; 128243a90d84SBarry Smith ierr = VecScatterBegin(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr); 1283f830108cSBarry Smith ierr = (*a->A->ops->multadd)(a->A,xx,yy,zz);CHKERRQ(ierr); 128443a90d84SBarry Smith ierr = VecScatterEnd(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr); 1285f830108cSBarry Smith ierr = (*a->B->ops->multadd)(a->B,a->lvec,zz,zz);CHKERRQ(ierr); 12863a40ed3dSBarry Smith PetscFunctionReturn(0); 1287cee3aa6bSSatish Balay } 1288cee3aa6bSSatish Balay 12894a2ae208SSatish Balay #undef __FUNCT__ 12904a2ae208SSatish Balay #define __FUNCT__ "MatMultTranspose_MPIBAIJ" 1291dfbe8321SBarry Smith PetscErrorCode MatMultTranspose_MPIBAIJ(Mat A,Vec xx,Vec yy) 1292cee3aa6bSSatish Balay { 1293cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1294dfbe8321SBarry Smith PetscErrorCode ierr; 1295a5ff213dSBarry Smith PetscTruth merged; 1296cee3aa6bSSatish Balay 1297d64ed03dSBarry Smith PetscFunctionBegin; 1298a5ff213dSBarry Smith ierr = VecScatterGetMerged(a->Mvctx,&merged);CHKERRQ(ierr); 1299cee3aa6bSSatish Balay /* do nondiagonal part */ 13007c922b88SBarry Smith ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr); 1301a5ff213dSBarry Smith if (!merged) { 1302cee3aa6bSSatish Balay /* send it on its way */ 1303537820f0SBarry Smith ierr = VecScatterBegin(a->lvec,yy,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr); 1304cee3aa6bSSatish Balay /* do local part */ 13057c922b88SBarry Smith ierr = (*a->A->ops->multtranspose)(a->A,xx,yy);CHKERRQ(ierr); 1306cee3aa6bSSatish Balay /* receive remote parts: note this assumes the values are not actually */ 1307a5ff213dSBarry Smith /* inserted in yy until the next line */ 1308639f9d9dSBarry Smith ierr = VecScatterEnd(a->lvec,yy,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr); 1309a5ff213dSBarry Smith } else { 1310a5ff213dSBarry Smith /* do local part */ 1311a5ff213dSBarry Smith ierr = (*a->A->ops->multtranspose)(a->A,xx,yy);CHKERRQ(ierr); 1312a5ff213dSBarry Smith /* send it on its way */ 1313a5ff213dSBarry Smith ierr = VecScatterBegin(a->lvec,yy,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr); 1314a5ff213dSBarry Smith /* values actually were received in the Begin() but we need to call this nop */ 1315a5ff213dSBarry Smith ierr = VecScatterEnd(a->lvec,yy,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr); 1316a5ff213dSBarry Smith } 13173a40ed3dSBarry Smith PetscFunctionReturn(0); 1318cee3aa6bSSatish Balay } 1319cee3aa6bSSatish Balay 13204a2ae208SSatish Balay #undef __FUNCT__ 13214a2ae208SSatish Balay #define __FUNCT__ "MatMultTransposeAdd_MPIBAIJ" 1322dfbe8321SBarry Smith PetscErrorCode MatMultTransposeAdd_MPIBAIJ(Mat A,Vec xx,Vec yy,Vec zz) 1323cee3aa6bSSatish Balay { 1324cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1325dfbe8321SBarry Smith PetscErrorCode ierr; 1326cee3aa6bSSatish Balay 1327d64ed03dSBarry Smith PetscFunctionBegin; 1328cee3aa6bSSatish Balay /* do nondiagonal part */ 13297c922b88SBarry Smith ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr); 1330cee3aa6bSSatish Balay /* send it on its way */ 1331537820f0SBarry Smith ierr = VecScatterBegin(a->lvec,zz,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr); 1332cee3aa6bSSatish Balay /* do local part */ 13337c922b88SBarry Smith ierr = (*a->A->ops->multtransposeadd)(a->A,xx,yy,zz);CHKERRQ(ierr); 1334cee3aa6bSSatish Balay /* receive remote parts: note this assumes the values are not actually */ 1335cee3aa6bSSatish Balay /* inserted in yy until the next line, which is true for my implementation*/ 1336cee3aa6bSSatish Balay /* but is not perhaps always true. */ 1337537820f0SBarry Smith ierr = VecScatterEnd(a->lvec,zz,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr); 13383a40ed3dSBarry Smith PetscFunctionReturn(0); 1339cee3aa6bSSatish Balay } 1340cee3aa6bSSatish Balay 1341cee3aa6bSSatish Balay /* 1342cee3aa6bSSatish Balay This only works correctly for square matrices where the subblock A->A is the 1343cee3aa6bSSatish Balay diagonal block 1344cee3aa6bSSatish Balay */ 13454a2ae208SSatish Balay #undef __FUNCT__ 13464a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonal_MPIBAIJ" 1347dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_MPIBAIJ(Mat A,Vec v) 1348cee3aa6bSSatish Balay { 1349cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1350dfbe8321SBarry Smith PetscErrorCode ierr; 1351d64ed03dSBarry Smith 1352d64ed03dSBarry Smith PetscFunctionBegin; 1353899cda47SBarry Smith if (A->rmap.N != A->cmap.N) SETERRQ(PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block"); 13543a40ed3dSBarry Smith ierr = MatGetDiagonal(a->A,v);CHKERRQ(ierr); 13553a40ed3dSBarry Smith PetscFunctionReturn(0); 1356cee3aa6bSSatish Balay } 1357cee3aa6bSSatish Balay 13584a2ae208SSatish Balay #undef __FUNCT__ 13594a2ae208SSatish Balay #define __FUNCT__ "MatScale_MPIBAIJ" 1360f4df32b1SMatthew Knepley PetscErrorCode MatScale_MPIBAIJ(Mat A,PetscScalar aa) 1361cee3aa6bSSatish Balay { 1362cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1363dfbe8321SBarry Smith PetscErrorCode ierr; 1364d64ed03dSBarry Smith 1365d64ed03dSBarry Smith PetscFunctionBegin; 1366f4df32b1SMatthew Knepley ierr = MatScale(a->A,aa);CHKERRQ(ierr); 1367f4df32b1SMatthew Knepley ierr = MatScale(a->B,aa);CHKERRQ(ierr); 13683a40ed3dSBarry Smith PetscFunctionReturn(0); 1369cee3aa6bSSatish Balay } 1370026e39d0SSatish Balay 13714a2ae208SSatish Balay #undef __FUNCT__ 13724a2ae208SSatish Balay #define __FUNCT__ "MatGetRow_MPIBAIJ" 1373b24ad042SBarry Smith PetscErrorCode MatGetRow_MPIBAIJ(Mat matin,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 1374acdf5bf4SSatish Balay { 1375acdf5bf4SSatish Balay Mat_MPIBAIJ *mat = (Mat_MPIBAIJ*)matin->data; 137687828ca2SBarry Smith PetscScalar *vworkA,*vworkB,**pvA,**pvB,*v_p; 13776849ba73SBarry Smith PetscErrorCode ierr; 1378899cda47SBarry Smith PetscInt bs = matin->rmap.bs,bs2 = mat->bs2,i,*cworkA,*cworkB,**pcA,**pcB; 1379899cda47SBarry Smith PetscInt nztot,nzA,nzB,lrow,brstart = matin->rmap.rstart,brend = matin->rmap.rend; 1380899cda47SBarry Smith PetscInt *cmap,*idx_p,cstart = mat->cstartbs; 1381acdf5bf4SSatish Balay 1382d64ed03dSBarry Smith PetscFunctionBegin; 1383abc0a331SBarry Smith if (mat->getrowactive) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Already active"); 1384acdf5bf4SSatish Balay mat->getrowactive = PETSC_TRUE; 1385acdf5bf4SSatish Balay 1386acdf5bf4SSatish Balay if (!mat->rowvalues && (idx || v)) { 1387acdf5bf4SSatish Balay /* 1388acdf5bf4SSatish Balay allocate enough space to hold information from the longest row. 1389acdf5bf4SSatish Balay */ 1390acdf5bf4SSatish Balay Mat_SeqBAIJ *Aa = (Mat_SeqBAIJ*)mat->A->data,*Ba = (Mat_SeqBAIJ*)mat->B->data; 1391b24ad042SBarry Smith PetscInt max = 1,mbs = mat->mbs,tmp; 1392bd16c2feSSatish Balay for (i=0; i<mbs; i++) { 1393acdf5bf4SSatish Balay tmp = Aa->i[i+1] - Aa->i[i] + Ba->i[i+1] - Ba->i[i]; 1394acdf5bf4SSatish Balay if (max < tmp) { max = tmp; } 1395acdf5bf4SSatish Balay } 1396b24ad042SBarry Smith ierr = PetscMalloc(max*bs2*(sizeof(PetscInt)+sizeof(PetscScalar)),&mat->rowvalues);CHKERRQ(ierr); 1397b24ad042SBarry Smith mat->rowindices = (PetscInt*)(mat->rowvalues + max*bs2); 1398acdf5bf4SSatish Balay } 1399acdf5bf4SSatish Balay 140029bbc08cSBarry Smith if (row < brstart || row >= brend) SETERRQ(PETSC_ERR_SUP,"Only local rows") 1401d9d09a02SSatish Balay lrow = row - brstart; 1402acdf5bf4SSatish Balay 1403acdf5bf4SSatish Balay pvA = &vworkA; pcA = &cworkA; pvB = &vworkB; pcB = &cworkB; 1404acdf5bf4SSatish Balay if (!v) {pvA = 0; pvB = 0;} 1405acdf5bf4SSatish Balay if (!idx) {pcA = 0; if (!v) pcB = 0;} 1406f830108cSBarry Smith ierr = (*mat->A->ops->getrow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr); 1407f830108cSBarry Smith ierr = (*mat->B->ops->getrow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr); 1408acdf5bf4SSatish Balay nztot = nzA + nzB; 1409acdf5bf4SSatish Balay 1410acdf5bf4SSatish Balay cmap = mat->garray; 1411acdf5bf4SSatish Balay if (v || idx) { 1412acdf5bf4SSatish Balay if (nztot) { 1413acdf5bf4SSatish Balay /* Sort by increasing column numbers, assuming A and B already sorted */ 1414b24ad042SBarry Smith PetscInt imark = -1; 1415acdf5bf4SSatish Balay if (v) { 1416acdf5bf4SSatish Balay *v = v_p = mat->rowvalues; 1417acdf5bf4SSatish Balay for (i=0; i<nzB; i++) { 1418d9d09a02SSatish Balay if (cmap[cworkB[i]/bs] < cstart) v_p[i] = vworkB[i]; 1419acdf5bf4SSatish Balay else break; 1420acdf5bf4SSatish Balay } 1421acdf5bf4SSatish Balay imark = i; 1422acdf5bf4SSatish Balay for (i=0; i<nzA; i++) v_p[imark+i] = vworkA[i]; 1423acdf5bf4SSatish Balay for (i=imark; i<nzB; i++) v_p[nzA+i] = vworkB[i]; 1424acdf5bf4SSatish Balay } 1425acdf5bf4SSatish Balay if (idx) { 1426acdf5bf4SSatish Balay *idx = idx_p = mat->rowindices; 1427acdf5bf4SSatish Balay if (imark > -1) { 1428acdf5bf4SSatish Balay for (i=0; i<imark; i++) { 1429bd16c2feSSatish Balay idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs; 1430acdf5bf4SSatish Balay } 1431acdf5bf4SSatish Balay } else { 1432acdf5bf4SSatish Balay for (i=0; i<nzB; i++) { 1433d9d09a02SSatish Balay if (cmap[cworkB[i]/bs] < cstart) 1434d9d09a02SSatish Balay idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ; 1435acdf5bf4SSatish Balay else break; 1436acdf5bf4SSatish Balay } 1437acdf5bf4SSatish Balay imark = i; 1438acdf5bf4SSatish Balay } 1439d9d09a02SSatish Balay for (i=0; i<nzA; i++) idx_p[imark+i] = cstart*bs + cworkA[i]; 1440d9d09a02SSatish Balay for (i=imark; i<nzB; i++) idx_p[nzA+i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ; 1441acdf5bf4SSatish Balay } 1442d64ed03dSBarry Smith } else { 1443d212a18eSSatish Balay if (idx) *idx = 0; 1444d212a18eSSatish Balay if (v) *v = 0; 1445d212a18eSSatish Balay } 1446acdf5bf4SSatish Balay } 1447acdf5bf4SSatish Balay *nz = nztot; 1448f830108cSBarry Smith ierr = (*mat->A->ops->restorerow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr); 1449f830108cSBarry Smith ierr = (*mat->B->ops->restorerow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr); 14503a40ed3dSBarry Smith PetscFunctionReturn(0); 1451acdf5bf4SSatish Balay } 1452acdf5bf4SSatish Balay 14534a2ae208SSatish Balay #undef __FUNCT__ 14544a2ae208SSatish Balay #define __FUNCT__ "MatRestoreRow_MPIBAIJ" 1455b24ad042SBarry Smith PetscErrorCode MatRestoreRow_MPIBAIJ(Mat mat,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 1456acdf5bf4SSatish Balay { 1457acdf5bf4SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 1458d64ed03dSBarry Smith 1459d64ed03dSBarry Smith PetscFunctionBegin; 1460abc0a331SBarry Smith if (!baij->getrowactive) { 146129bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"MatGetRow not called"); 1462acdf5bf4SSatish Balay } 1463acdf5bf4SSatish Balay baij->getrowactive = PETSC_FALSE; 14643a40ed3dSBarry Smith PetscFunctionReturn(0); 1465acdf5bf4SSatish Balay } 1466acdf5bf4SSatish Balay 14674a2ae208SSatish Balay #undef __FUNCT__ 14684a2ae208SSatish Balay #define __FUNCT__ "MatZeroEntries_MPIBAIJ" 1469dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_MPIBAIJ(Mat A) 147058667388SSatish Balay { 147158667388SSatish Balay Mat_MPIBAIJ *l = (Mat_MPIBAIJ*)A->data; 1472dfbe8321SBarry Smith PetscErrorCode ierr; 1473d64ed03dSBarry Smith 1474d64ed03dSBarry Smith PetscFunctionBegin; 147558667388SSatish Balay ierr = MatZeroEntries(l->A);CHKERRQ(ierr); 147658667388SSatish Balay ierr = MatZeroEntries(l->B);CHKERRQ(ierr); 14773a40ed3dSBarry Smith PetscFunctionReturn(0); 147858667388SSatish Balay } 14790ac07820SSatish Balay 14804a2ae208SSatish Balay #undef __FUNCT__ 14814a2ae208SSatish Balay #define __FUNCT__ "MatGetInfo_MPIBAIJ" 1482dfbe8321SBarry Smith PetscErrorCode MatGetInfo_MPIBAIJ(Mat matin,MatInfoType flag,MatInfo *info) 14830ac07820SSatish Balay { 14844e220ebcSLois Curfman McInnes Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)matin->data; 14854e220ebcSLois Curfman McInnes Mat A = a->A,B = a->B; 1486dfbe8321SBarry Smith PetscErrorCode ierr; 1487329f5518SBarry Smith PetscReal isend[5],irecv[5]; 14880ac07820SSatish Balay 1489d64ed03dSBarry Smith PetscFunctionBegin; 1490899cda47SBarry Smith info->block_size = (PetscReal)matin->rmap.bs; 14914e220ebcSLois Curfman McInnes ierr = MatGetInfo(A,MAT_LOCAL,info);CHKERRQ(ierr); 14920e4b21beSBarry Smith isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded; 1493de87f314SBarry Smith isend[3] = info->memory; isend[4] = info->mallocs; 14944e220ebcSLois Curfman McInnes ierr = MatGetInfo(B,MAT_LOCAL,info);CHKERRQ(ierr); 14950e4b21beSBarry Smith isend[0] += info->nz_used; isend[1] += info->nz_allocated; isend[2] += info->nz_unneeded; 1496de87f314SBarry Smith isend[3] += info->memory; isend[4] += info->mallocs; 14970ac07820SSatish Balay if (flag == MAT_LOCAL) { 14984e220ebcSLois Curfman McInnes info->nz_used = isend[0]; 14994e220ebcSLois Curfman McInnes info->nz_allocated = isend[1]; 15004e220ebcSLois Curfman McInnes info->nz_unneeded = isend[2]; 15014e220ebcSLois Curfman McInnes info->memory = isend[3]; 15024e220ebcSLois Curfman McInnes info->mallocs = isend[4]; 15030ac07820SSatish Balay } else if (flag == MAT_GLOBAL_MAX) { 1504d7d1e502SBarry Smith ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_MAX,matin->comm);CHKERRQ(ierr); 15054e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 15064e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 15074e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 15084e220ebcSLois Curfman McInnes info->memory = irecv[3]; 15094e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 15100ac07820SSatish Balay } else if (flag == MAT_GLOBAL_SUM) { 1511d7d1e502SBarry Smith ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_SUM,matin->comm);CHKERRQ(ierr); 15124e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 15134e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 15144e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 15154e220ebcSLois Curfman McInnes info->memory = irecv[3]; 15164e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 1517d41123aaSBarry Smith } else { 151877431f27SBarry Smith SETERRQ1(PETSC_ERR_ARG_WRONG,"Unknown MatInfoType argument %d",(int)flag); 15190ac07820SSatish Balay } 1520899cda47SBarry Smith info->rows_global = (PetscReal)A->rmap.N; 1521899cda47SBarry Smith info->columns_global = (PetscReal)A->cmap.N; 1522899cda47SBarry Smith info->rows_local = (PetscReal)A->rmap.N; 1523899cda47SBarry Smith info->columns_local = (PetscReal)A->cmap.N; 15244e220ebcSLois Curfman McInnes info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */ 15254e220ebcSLois Curfman McInnes info->fill_ratio_needed = 0; 15264e220ebcSLois Curfman McInnes info->factor_mallocs = 0; 15273a40ed3dSBarry Smith PetscFunctionReturn(0); 15280ac07820SSatish Balay } 15290ac07820SSatish Balay 15304a2ae208SSatish Balay #undef __FUNCT__ 15314a2ae208SSatish Balay #define __FUNCT__ "MatSetOption_MPIBAIJ" 1532dfbe8321SBarry Smith PetscErrorCode MatSetOption_MPIBAIJ(Mat A,MatOption op) 153358667388SSatish Balay { 153458667388SSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1535dfbe8321SBarry Smith PetscErrorCode ierr; 153658667388SSatish Balay 1537d64ed03dSBarry Smith PetscFunctionBegin; 153812c028f9SKris Buschelman switch (op) { 153912c028f9SKris Buschelman case MAT_NO_NEW_NONZERO_LOCATIONS: 154012c028f9SKris Buschelman case MAT_YES_NEW_NONZERO_LOCATIONS: 154112c028f9SKris Buschelman case MAT_COLUMNS_UNSORTED: 154212c028f9SKris Buschelman case MAT_COLUMNS_SORTED: 154312c028f9SKris Buschelman case MAT_NEW_NONZERO_ALLOCATION_ERR: 154412c028f9SKris Buschelman case MAT_KEEP_ZEROED_ROWS: 154512c028f9SKris Buschelman case MAT_NEW_NONZERO_LOCATION_ERR: 154698305bb5SBarry Smith ierr = MatSetOption(a->A,op);CHKERRQ(ierr); 154798305bb5SBarry Smith ierr = MatSetOption(a->B,op);CHKERRQ(ierr); 154812c028f9SKris Buschelman break; 154912c028f9SKris Buschelman case MAT_ROW_ORIENTED: 15507c922b88SBarry Smith a->roworiented = PETSC_TRUE; 155198305bb5SBarry Smith ierr = MatSetOption(a->A,op);CHKERRQ(ierr); 155298305bb5SBarry Smith ierr = MatSetOption(a->B,op);CHKERRQ(ierr); 155312c028f9SKris Buschelman break; 155412c028f9SKris Buschelman case MAT_ROWS_SORTED: 155512c028f9SKris Buschelman case MAT_ROWS_UNSORTED: 155612c028f9SKris Buschelman case MAT_YES_NEW_DIAGONALS: 1557ae15b995SBarry Smith ierr = PetscInfo(A,"Option ignored\n");CHKERRQ(ierr); 155812c028f9SKris Buschelman break; 155912c028f9SKris Buschelman case MAT_COLUMN_ORIENTED: 15607c922b88SBarry Smith a->roworiented = PETSC_FALSE; 156198305bb5SBarry Smith ierr = MatSetOption(a->A,op);CHKERRQ(ierr); 156298305bb5SBarry Smith ierr = MatSetOption(a->B,op);CHKERRQ(ierr); 156312c028f9SKris Buschelman break; 156412c028f9SKris Buschelman case MAT_IGNORE_OFF_PROC_ENTRIES: 15657c922b88SBarry Smith a->donotstash = PETSC_TRUE; 156612c028f9SKris Buschelman break; 156712c028f9SKris Buschelman case MAT_NO_NEW_DIAGONALS: 156829bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"MAT_NO_NEW_DIAGONALS"); 156912c028f9SKris Buschelman case MAT_USE_HASH_TABLE: 15707c922b88SBarry Smith a->ht_flag = PETSC_TRUE; 157112c028f9SKris Buschelman break; 157277e54ba9SKris Buschelman case MAT_SYMMETRIC: 157377e54ba9SKris Buschelman case MAT_STRUCTURALLY_SYMMETRIC: 15742188ac68SBarry Smith case MAT_HERMITIAN: 15752188ac68SBarry Smith case MAT_SYMMETRY_ETERNAL: 15762188ac68SBarry Smith ierr = MatSetOption(a->A,op);CHKERRQ(ierr); 15772188ac68SBarry Smith break; 15789a4540c5SBarry Smith case MAT_NOT_SYMMETRIC: 15799a4540c5SBarry Smith case MAT_NOT_STRUCTURALLY_SYMMETRIC: 15809a4540c5SBarry Smith case MAT_NOT_HERMITIAN: 15819a4540c5SBarry Smith case MAT_NOT_SYMMETRY_ETERNAL: 158277e54ba9SKris Buschelman break; 158312c028f9SKris Buschelman default: 1584ad86a440SBarry Smith SETERRQ1(PETSC_ERR_SUP,"unknown option %d",op); 1585d64ed03dSBarry Smith } 15863a40ed3dSBarry Smith PetscFunctionReturn(0); 158758667388SSatish Balay } 158858667388SSatish Balay 15894a2ae208SSatish Balay #undef __FUNCT__ 15904a2ae208SSatish Balay #define __FUNCT__ "MatTranspose_MPIBAIJ(" 1591dfbe8321SBarry Smith PetscErrorCode MatTranspose_MPIBAIJ(Mat A,Mat *matout) 15920ac07820SSatish Balay { 15930ac07820SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)A->data; 15940ac07820SSatish Balay Mat_SeqBAIJ *Aloc; 15950ac07820SSatish Balay Mat B; 1596dfbe8321SBarry Smith PetscErrorCode ierr; 1597899cda47SBarry Smith PetscInt M=A->rmap.N,N=A->cmap.N,*ai,*aj,i,*rvals,j,k,col; 1598899cda47SBarry Smith PetscInt bs=A->rmap.bs,mbs=baij->mbs; 15993eda8832SBarry Smith MatScalar *a; 16000ac07820SSatish Balay 1601d64ed03dSBarry Smith PetscFunctionBegin; 160229bbc08cSBarry Smith if (!matout && M != N) SETERRQ(PETSC_ERR_ARG_SIZ,"Square matrix only for in-place"); 1603f69a0ea3SMatthew Knepley ierr = MatCreate(A->comm,&B);CHKERRQ(ierr); 1604899cda47SBarry Smith ierr = MatSetSizes(B,A->cmap.n,A->rmap.n,N,M);CHKERRQ(ierr); 1605f204ca49SKris Buschelman ierr = MatSetType(B,A->type_name);CHKERRQ(ierr); 1606899cda47SBarry Smith ierr = MatMPIBAIJSetPreallocation(B,A->rmap.bs,0,PETSC_NULL,0,PETSC_NULL);CHKERRQ(ierr); 16070ac07820SSatish Balay 16080ac07820SSatish Balay /* copy over the A part */ 16090ac07820SSatish Balay Aloc = (Mat_SeqBAIJ*)baij->A->data; 16100ac07820SSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 1611b24ad042SBarry Smith ierr = PetscMalloc(bs*sizeof(PetscInt),&rvals);CHKERRQ(ierr); 16120ac07820SSatish Balay 16130ac07820SSatish Balay for (i=0; i<mbs; i++) { 1614899cda47SBarry Smith rvals[0] = bs*(baij->rstartbs + i); 16150ac07820SSatish Balay for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; } 16160ac07820SSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 1617899cda47SBarry Smith col = (baij->cstartbs+aj[j])*bs; 16180ac07820SSatish Balay for (k=0; k<bs; k++) { 161993fea6afSBarry Smith ierr = MatSetValues_MPIBAIJ_MatScalar(B,1,&col,bs,rvals,a,INSERT_VALUES);CHKERRQ(ierr); 16200ac07820SSatish Balay col++; a += bs; 16210ac07820SSatish Balay } 16220ac07820SSatish Balay } 16230ac07820SSatish Balay } 16240ac07820SSatish Balay /* copy over the B part */ 16250ac07820SSatish Balay Aloc = (Mat_SeqBAIJ*)baij->B->data; 16260ac07820SSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 16270ac07820SSatish Balay for (i=0; i<mbs; i++) { 1628899cda47SBarry Smith rvals[0] = bs*(baij->rstartbs + i); 16290ac07820SSatish Balay for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; } 16300ac07820SSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 16310ac07820SSatish Balay col = baij->garray[aj[j]]*bs; 16320ac07820SSatish Balay for (k=0; k<bs; k++) { 163393fea6afSBarry Smith ierr = MatSetValues_MPIBAIJ_MatScalar(B,1,&col,bs,rvals,a,INSERT_VALUES);CHKERRQ(ierr); 16340ac07820SSatish Balay col++; a += bs; 16350ac07820SSatish Balay } 16360ac07820SSatish Balay } 16370ac07820SSatish Balay } 1638606d414cSSatish Balay ierr = PetscFree(rvals);CHKERRQ(ierr); 16390ac07820SSatish Balay ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 16400ac07820SSatish Balay ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 16410ac07820SSatish Balay 16427c922b88SBarry Smith if (matout) { 16430ac07820SSatish Balay *matout = B; 16440ac07820SSatish Balay } else { 1645273d9f13SBarry Smith ierr = MatHeaderCopy(A,B);CHKERRQ(ierr); 16460ac07820SSatish Balay } 16473a40ed3dSBarry Smith PetscFunctionReturn(0); 16480ac07820SSatish Balay } 16490e95ebc0SSatish Balay 16504a2ae208SSatish Balay #undef __FUNCT__ 16514a2ae208SSatish Balay #define __FUNCT__ "MatDiagonalScale_MPIBAIJ" 1652dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_MPIBAIJ(Mat mat,Vec ll,Vec rr) 16530e95ebc0SSatish Balay { 165436c4a09eSSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 165536c4a09eSSatish Balay Mat a = baij->A,b = baij->B; 1656dfbe8321SBarry Smith PetscErrorCode ierr; 1657b24ad042SBarry Smith PetscInt s1,s2,s3; 16580e95ebc0SSatish Balay 1659d64ed03dSBarry Smith PetscFunctionBegin; 166036c4a09eSSatish Balay ierr = MatGetLocalSize(mat,&s2,&s3);CHKERRQ(ierr); 166136c4a09eSSatish Balay if (rr) { 166236c4a09eSSatish Balay ierr = VecGetLocalSize(rr,&s1);CHKERRQ(ierr); 166329bbc08cSBarry Smith if (s1!=s3) SETERRQ(PETSC_ERR_ARG_SIZ,"right vector non-conforming local size"); 166436c4a09eSSatish Balay /* Overlap communication with computation. */ 166536c4a09eSSatish Balay ierr = VecScatterBegin(rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD,baij->Mvctx);CHKERRQ(ierr); 166636c4a09eSSatish Balay } 16670e95ebc0SSatish Balay if (ll) { 16680e95ebc0SSatish Balay ierr = VecGetLocalSize(ll,&s1);CHKERRQ(ierr); 166929bbc08cSBarry Smith if (s1!=s2) SETERRQ(PETSC_ERR_ARG_SIZ,"left vector non-conforming local size"); 1670a21fb8cbSBarry Smith ierr = (*b->ops->diagonalscale)(b,ll,PETSC_NULL);CHKERRQ(ierr); 16710e95ebc0SSatish Balay } 167236c4a09eSSatish Balay /* scale the diagonal block */ 167336c4a09eSSatish Balay ierr = (*a->ops->diagonalscale)(a,ll,rr);CHKERRQ(ierr); 167436c4a09eSSatish Balay 167536c4a09eSSatish Balay if (rr) { 167636c4a09eSSatish Balay /* Do a scatter end and then right scale the off-diagonal block */ 167736c4a09eSSatish Balay ierr = VecScatterEnd(rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD,baij->Mvctx);CHKERRQ(ierr); 1678a21fb8cbSBarry Smith ierr = (*b->ops->diagonalscale)(b,PETSC_NULL,baij->lvec);CHKERRQ(ierr); 167936c4a09eSSatish Balay } 168036c4a09eSSatish Balay 16813a40ed3dSBarry Smith PetscFunctionReturn(0); 16820e95ebc0SSatish Balay } 16830e95ebc0SSatish Balay 16844a2ae208SSatish Balay #undef __FUNCT__ 16854a2ae208SSatish Balay #define __FUNCT__ "MatZeroRows_MPIBAIJ" 1686f4df32b1SMatthew Knepley PetscErrorCode MatZeroRows_MPIBAIJ(Mat A,PetscInt N,const PetscInt rows[],PetscScalar diag) 16870ac07820SSatish Balay { 16880ac07820SSatish Balay Mat_MPIBAIJ *l = (Mat_MPIBAIJ*)A->data; 16896849ba73SBarry Smith PetscErrorCode ierr; 1690b24ad042SBarry Smith PetscMPIInt imdex,size = l->size,n,rank = l->rank; 1691899cda47SBarry Smith PetscInt i,*owners = A->rmap.range; 1692b24ad042SBarry Smith PetscInt *nprocs,j,idx,nsends,row; 1693b24ad042SBarry Smith PetscInt nmax,*svalues,*starts,*owner,nrecvs; 16946543fbbaSBarry Smith PetscInt *rvalues,tag = A->tag,count,base,slen,*source,lastidx = -1; 1695357c27ecSBarry Smith PetscInt *lens,*lrows,*values,rstart_bs=A->rmap.rstart; 16960ac07820SSatish Balay MPI_Comm comm = A->comm; 16970ac07820SSatish Balay MPI_Request *send_waits,*recv_waits; 16980ac07820SSatish Balay MPI_Status recv_status,*send_status; 16996543fbbaSBarry Smith #if defined(PETSC_DEBUG) 17006543fbbaSBarry Smith PetscTruth found = PETSC_FALSE; 17016543fbbaSBarry Smith #endif 17020ac07820SSatish Balay 1703d64ed03dSBarry Smith PetscFunctionBegin; 17040ac07820SSatish Balay /* first count number of contributors to each processor */ 1705b24ad042SBarry Smith ierr = PetscMalloc(2*size*sizeof(PetscInt),&nprocs);CHKERRQ(ierr); 1706b24ad042SBarry Smith ierr = PetscMemzero(nprocs,2*size*sizeof(PetscInt));CHKERRQ(ierr); 1707b24ad042SBarry Smith ierr = PetscMalloc((N+1)*sizeof(PetscInt),&owner);CHKERRQ(ierr); /* see note*/ 17086543fbbaSBarry Smith j = 0; 17090ac07820SSatish Balay for (i=0; i<N; i++) { 17106543fbbaSBarry Smith if (lastidx > (idx = rows[i])) j = 0; 17116543fbbaSBarry Smith lastidx = idx; 17126543fbbaSBarry Smith for (; j<size; j++) { 1713357c27ecSBarry Smith if (idx >= owners[j] && idx < owners[j+1]) { 17146543fbbaSBarry Smith nprocs[2*j]++; 17156543fbbaSBarry Smith nprocs[2*j+1] = 1; 17166543fbbaSBarry Smith owner[i] = j; 17176543fbbaSBarry Smith #if defined(PETSC_DEBUG) 17186543fbbaSBarry Smith found = PETSC_TRUE; 17196543fbbaSBarry Smith #endif 17206543fbbaSBarry Smith break; 17210ac07820SSatish Balay } 17220ac07820SSatish Balay } 17236543fbbaSBarry Smith #if defined(PETSC_DEBUG) 172429bbc08cSBarry Smith if (!found) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Index out of range"); 17256543fbbaSBarry Smith found = PETSC_FALSE; 17266543fbbaSBarry Smith #endif 17270ac07820SSatish Balay } 1728c1dc657dSBarry Smith nsends = 0; for (i=0; i<size; i++) { nsends += nprocs[2*i+1];} 17290ac07820SSatish Balay 17300ac07820SSatish Balay /* inform other processors of number of messages and max length*/ 1731c1dc657dSBarry Smith ierr = PetscMaxSum(comm,nprocs,&nmax,&nrecvs);CHKERRQ(ierr); 17320ac07820SSatish Balay 17330ac07820SSatish Balay /* post receives: */ 1734b24ad042SBarry Smith ierr = PetscMalloc((nrecvs+1)*(nmax+1)*sizeof(PetscInt),&rvalues);CHKERRQ(ierr); 1735b0a32e0cSBarry Smith ierr = PetscMalloc((nrecvs+1)*sizeof(MPI_Request),&recv_waits);CHKERRQ(ierr); 17360ac07820SSatish Balay for (i=0; i<nrecvs; i++) { 1737b24ad042SBarry Smith ierr = MPI_Irecv(rvalues+nmax*i,nmax,MPIU_INT,MPI_ANY_SOURCE,tag,comm,recv_waits+i);CHKERRQ(ierr); 17380ac07820SSatish Balay } 17390ac07820SSatish Balay 17400ac07820SSatish Balay /* do sends: 17410ac07820SSatish Balay 1) starts[i] gives the starting index in svalues for stuff going to 17420ac07820SSatish Balay the ith processor 17430ac07820SSatish Balay */ 1744b24ad042SBarry Smith ierr = PetscMalloc((N+1)*sizeof(PetscInt),&svalues);CHKERRQ(ierr); 1745b0a32e0cSBarry Smith ierr = PetscMalloc((nsends+1)*sizeof(MPI_Request),&send_waits);CHKERRQ(ierr); 1746b24ad042SBarry Smith ierr = PetscMalloc((size+1)*sizeof(PetscInt),&starts);CHKERRQ(ierr); 17470ac07820SSatish Balay starts[0] = 0; 1748c1dc657dSBarry Smith for (i=1; i<size; i++) { starts[i] = starts[i-1] + nprocs[2*i-2];} 17490ac07820SSatish Balay for (i=0; i<N; i++) { 17500ac07820SSatish Balay svalues[starts[owner[i]]++] = rows[i]; 17510ac07820SSatish Balay } 17520ac07820SSatish Balay 17530ac07820SSatish Balay starts[0] = 0; 1754c1dc657dSBarry Smith for (i=1; i<size+1; i++) { starts[i] = starts[i-1] + nprocs[2*i-2];} 17550ac07820SSatish Balay count = 0; 17560ac07820SSatish Balay for (i=0; i<size; i++) { 1757c1dc657dSBarry Smith if (nprocs[2*i+1]) { 1758b24ad042SBarry Smith ierr = MPI_Isend(svalues+starts[i],nprocs[2*i],MPIU_INT,i,tag,comm,send_waits+count++);CHKERRQ(ierr); 17590ac07820SSatish Balay } 17600ac07820SSatish Balay } 1761606d414cSSatish Balay ierr = PetscFree(starts);CHKERRQ(ierr); 17620ac07820SSatish Balay 1763357c27ecSBarry Smith base = owners[rank]; 17640ac07820SSatish Balay 17650ac07820SSatish Balay /* wait on receives */ 1766b24ad042SBarry Smith ierr = PetscMalloc(2*(nrecvs+1)*sizeof(PetscInt),&lens);CHKERRQ(ierr); 17670ac07820SSatish Balay source = lens + nrecvs; 17680ac07820SSatish Balay count = nrecvs; slen = 0; 17690ac07820SSatish Balay while (count) { 1770ca161407SBarry Smith ierr = MPI_Waitany(nrecvs,recv_waits,&imdex,&recv_status);CHKERRQ(ierr); 17710ac07820SSatish Balay /* unpack receives into our local space */ 1772b24ad042SBarry Smith ierr = MPI_Get_count(&recv_status,MPIU_INT,&n);CHKERRQ(ierr); 17730ac07820SSatish Balay source[imdex] = recv_status.MPI_SOURCE; 17740ac07820SSatish Balay lens[imdex] = n; 17750ac07820SSatish Balay slen += n; 17760ac07820SSatish Balay count--; 17770ac07820SSatish Balay } 1778606d414cSSatish Balay ierr = PetscFree(recv_waits);CHKERRQ(ierr); 17790ac07820SSatish Balay 17800ac07820SSatish Balay /* move the data into the send scatter */ 1781b24ad042SBarry Smith ierr = PetscMalloc((slen+1)*sizeof(PetscInt),&lrows);CHKERRQ(ierr); 17820ac07820SSatish Balay count = 0; 17830ac07820SSatish Balay for (i=0; i<nrecvs; i++) { 17840ac07820SSatish Balay values = rvalues + i*nmax; 17850ac07820SSatish Balay for (j=0; j<lens[i]; j++) { 17860ac07820SSatish Balay lrows[count++] = values[j] - base; 17870ac07820SSatish Balay } 17880ac07820SSatish Balay } 1789606d414cSSatish Balay ierr = PetscFree(rvalues);CHKERRQ(ierr); 1790606d414cSSatish Balay ierr = PetscFree(lens);CHKERRQ(ierr); 1791606d414cSSatish Balay ierr = PetscFree(owner);CHKERRQ(ierr); 1792606d414cSSatish Balay ierr = PetscFree(nprocs);CHKERRQ(ierr); 17930ac07820SSatish Balay 17940ac07820SSatish Balay /* actually zap the local rows */ 179572dacd9aSBarry Smith /* 179672dacd9aSBarry Smith Zero the required rows. If the "diagonal block" of the matrix 1797a8c7a070SBarry Smith is square and the user wishes to set the diagonal we use separate 179872dacd9aSBarry Smith code so that MatSetValues() is not called for each diagonal allocating 179972dacd9aSBarry Smith new memory, thus calling lots of mallocs and slowing things down. 180072dacd9aSBarry Smith 1801f4df32b1SMatthew Knepley Contributed by: Matthew Knepley 180272dacd9aSBarry Smith */ 18039c957beeSSatish Balay /* must zero l->B before l->A because the (diag) case below may put values into l->B*/ 1804f4df32b1SMatthew Knepley ierr = MatZeroRows_SeqBAIJ(l->B,slen,lrows,0.0);CHKERRQ(ierr); 1805899cda47SBarry Smith if ((diag != 0.0) && (l->A->rmap.N == l->A->cmap.N)) { 1806f4df32b1SMatthew Knepley ierr = MatZeroRows_SeqBAIJ(l->A,slen,lrows,diag);CHKERRQ(ierr); 1807f4df32b1SMatthew Knepley } else if (diag != 0.0) { 1808f4df32b1SMatthew Knepley ierr = MatZeroRows_SeqBAIJ(l->A,slen,lrows,0.0);CHKERRQ(ierr); 1809fa46199cSSatish Balay if (((Mat_SeqBAIJ*)l->A->data)->nonew) { 181029bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"MatZeroRows() on rectangular matrices cannot be used with the Mat options \n\ 1811fa46199cSSatish Balay MAT_NO_NEW_NONZERO_LOCATIONS,MAT_NEW_NONZERO_LOCATION_ERR,MAT_NEW_NONZERO_ALLOCATION_ERR"); 18126525c446SSatish Balay } 1813a07cd24cSSatish Balay for (i=0; i<slen; i++) { 1814a07cd24cSSatish Balay row = lrows[i] + rstart_bs; 1815f4df32b1SMatthew Knepley ierr = MatSetValues(A,1,&row,1,&row,&diag,INSERT_VALUES);CHKERRQ(ierr); 1816a07cd24cSSatish Balay } 1817a07cd24cSSatish Balay ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 1818a07cd24cSSatish Balay ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 18199c957beeSSatish Balay } else { 1820f4df32b1SMatthew Knepley ierr = MatZeroRows_SeqBAIJ(l->A,slen,lrows,0.0);CHKERRQ(ierr); 1821a07cd24cSSatish Balay } 18229c957beeSSatish Balay 1823606d414cSSatish Balay ierr = PetscFree(lrows);CHKERRQ(ierr); 1824a07cd24cSSatish Balay 18250ac07820SSatish Balay /* wait on sends */ 18260ac07820SSatish Balay if (nsends) { 182782502324SSatish Balay ierr = PetscMalloc(nsends*sizeof(MPI_Status),&send_status);CHKERRQ(ierr); 1828ca161407SBarry Smith ierr = MPI_Waitall(nsends,send_waits,send_status);CHKERRQ(ierr); 1829606d414cSSatish Balay ierr = PetscFree(send_status);CHKERRQ(ierr); 18300ac07820SSatish Balay } 1831606d414cSSatish Balay ierr = PetscFree(send_waits);CHKERRQ(ierr); 1832606d414cSSatish Balay ierr = PetscFree(svalues);CHKERRQ(ierr); 18330ac07820SSatish Balay 18343a40ed3dSBarry Smith PetscFunctionReturn(0); 18350ac07820SSatish Balay } 183672dacd9aSBarry Smith 18374a2ae208SSatish Balay #undef __FUNCT__ 18384a2ae208SSatish Balay #define __FUNCT__ "MatSetUnfactored_MPIBAIJ" 1839dfbe8321SBarry Smith PetscErrorCode MatSetUnfactored_MPIBAIJ(Mat A) 1840bb5a7306SBarry Smith { 1841bb5a7306SBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1842dfbe8321SBarry Smith PetscErrorCode ierr; 1843d64ed03dSBarry Smith 1844d64ed03dSBarry Smith PetscFunctionBegin; 1845bb5a7306SBarry Smith ierr = MatSetUnfactored(a->A);CHKERRQ(ierr); 18463a40ed3dSBarry Smith PetscFunctionReturn(0); 1847bb5a7306SBarry Smith } 1848bb5a7306SBarry Smith 18496849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIBAIJ(Mat,MatDuplicateOption,Mat *); 18500ac07820SSatish Balay 18514a2ae208SSatish Balay #undef __FUNCT__ 18524a2ae208SSatish Balay #define __FUNCT__ "MatEqual_MPIBAIJ" 1853dfbe8321SBarry Smith PetscErrorCode MatEqual_MPIBAIJ(Mat A,Mat B,PetscTruth *flag) 18547fc3c18eSBarry Smith { 18557fc3c18eSBarry Smith Mat_MPIBAIJ *matB = (Mat_MPIBAIJ*)B->data,*matA = (Mat_MPIBAIJ*)A->data; 18567fc3c18eSBarry Smith Mat a,b,c,d; 18577fc3c18eSBarry Smith PetscTruth flg; 1858dfbe8321SBarry Smith PetscErrorCode ierr; 18597fc3c18eSBarry Smith 18607fc3c18eSBarry Smith PetscFunctionBegin; 18617fc3c18eSBarry Smith a = matA->A; b = matA->B; 18627fc3c18eSBarry Smith c = matB->A; d = matB->B; 18637fc3c18eSBarry Smith 18647fc3c18eSBarry Smith ierr = MatEqual(a,c,&flg);CHKERRQ(ierr); 1865abc0a331SBarry Smith if (flg) { 18667fc3c18eSBarry Smith ierr = MatEqual(b,d,&flg);CHKERRQ(ierr); 18677fc3c18eSBarry Smith } 18687fc3c18eSBarry Smith ierr = MPI_Allreduce(&flg,flag,1,MPI_INT,MPI_LAND,A->comm);CHKERRQ(ierr); 18697fc3c18eSBarry Smith PetscFunctionReturn(0); 18707fc3c18eSBarry Smith } 18717fc3c18eSBarry Smith 18723c896bc6SHong Zhang #undef __FUNCT__ 18733c896bc6SHong Zhang #define __FUNCT__ "MatCopy_MPIBAIJ" 18743c896bc6SHong Zhang PetscErrorCode MatCopy_MPIBAIJ(Mat A,Mat B,MatStructure str) 18753c896bc6SHong Zhang { 18763c896bc6SHong Zhang PetscErrorCode ierr; 18773c896bc6SHong Zhang Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 18783c896bc6SHong Zhang Mat_MPIBAIJ *b = (Mat_MPIBAIJ *)B->data; 18793c896bc6SHong Zhang 18803c896bc6SHong Zhang PetscFunctionBegin; 18813c896bc6SHong Zhang /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */ 18823c896bc6SHong Zhang if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) { 18833c896bc6SHong Zhang ierr = MatCopy_Basic(A,B,str);CHKERRQ(ierr); 18843c896bc6SHong Zhang } else { 18853c896bc6SHong Zhang ierr = MatCopy(a->A,b->A,str);CHKERRQ(ierr); 18863c896bc6SHong Zhang ierr = MatCopy(a->B,b->B,str);CHKERRQ(ierr); 18873c896bc6SHong Zhang } 18883c896bc6SHong Zhang PetscFunctionReturn(0); 18893c896bc6SHong Zhang } 1890273d9f13SBarry Smith 18914a2ae208SSatish Balay #undef __FUNCT__ 18924a2ae208SSatish Balay #define __FUNCT__ "MatSetUpPreallocation_MPIBAIJ" 1893dfbe8321SBarry Smith PetscErrorCode MatSetUpPreallocation_MPIBAIJ(Mat A) 1894273d9f13SBarry Smith { 1895dfbe8321SBarry Smith PetscErrorCode ierr; 1896273d9f13SBarry Smith 1897273d9f13SBarry Smith PetscFunctionBegin; 18987edd0491SSatish Balay ierr = MatMPIBAIJSetPreallocation(A,PetscMax(A->rmap.bs,1),PETSC_DEFAULT,0,PETSC_DEFAULT,0);CHKERRQ(ierr); 1899273d9f13SBarry Smith PetscFunctionReturn(0); 1900273d9f13SBarry Smith } 1901273d9f13SBarry Smith 19024fe895cdSHong Zhang #include "petscblaslapack.h" 19034fe895cdSHong Zhang #undef __FUNCT__ 19044fe895cdSHong Zhang #define __FUNCT__ "MatAXPY_MPIBAIJ" 19054fe895cdSHong Zhang PetscErrorCode MatAXPY_MPIBAIJ(Mat Y,PetscScalar a,Mat X,MatStructure str) 19064fe895cdSHong Zhang { 19074fe895cdSHong Zhang PetscErrorCode ierr; 19084fe895cdSHong Zhang Mat_MPIBAIJ *xx=(Mat_MPIBAIJ *)X->data,*yy=(Mat_MPIBAIJ *)Y->data; 19094fe895cdSHong Zhang PetscBLASInt bnz,one=1; 19104fe895cdSHong Zhang Mat_SeqBAIJ *x,*y; 19114fe895cdSHong Zhang 19124fe895cdSHong Zhang PetscFunctionBegin; 19134fe895cdSHong Zhang if (str == SAME_NONZERO_PATTERN) { 19144fe895cdSHong Zhang PetscScalar alpha = a; 19154fe895cdSHong Zhang x = (Mat_SeqBAIJ *)xx->A->data; 19164fe895cdSHong Zhang y = (Mat_SeqBAIJ *)yy->A->data; 19174fe895cdSHong Zhang bnz = (PetscBLASInt)x->nz; 19184fe895cdSHong Zhang BLASaxpy_(&bnz,&alpha,x->a,&one,y->a,&one); 19194fe895cdSHong Zhang x = (Mat_SeqBAIJ *)xx->B->data; 19204fe895cdSHong Zhang y = (Mat_SeqBAIJ *)yy->B->data; 19214fe895cdSHong Zhang bnz = (PetscBLASInt)x->nz; 19224fe895cdSHong Zhang BLASaxpy_(&bnz,&alpha,x->a,&one,y->a,&one); 19234fe895cdSHong Zhang } else { 19244fe895cdSHong Zhang ierr = MatAXPY_Basic(Y,a,X,str);CHKERRQ(ierr); 19254fe895cdSHong Zhang } 19264fe895cdSHong Zhang PetscFunctionReturn(0); 19274fe895cdSHong Zhang } 19284fe895cdSHong Zhang 192999cafbc1SBarry Smith #undef __FUNCT__ 193099cafbc1SBarry Smith #define __FUNCT__ "MatRealPart_MPIBAIJ" 193199cafbc1SBarry Smith PetscErrorCode MatRealPart_MPIBAIJ(Mat A) 193299cafbc1SBarry Smith { 193399cafbc1SBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 193499cafbc1SBarry Smith PetscErrorCode ierr; 193599cafbc1SBarry Smith 193699cafbc1SBarry Smith PetscFunctionBegin; 193799cafbc1SBarry Smith ierr = MatRealPart(a->A);CHKERRQ(ierr); 193899cafbc1SBarry Smith ierr = MatRealPart(a->B);CHKERRQ(ierr); 193999cafbc1SBarry Smith PetscFunctionReturn(0); 194099cafbc1SBarry Smith } 194199cafbc1SBarry Smith 194299cafbc1SBarry Smith #undef __FUNCT__ 194399cafbc1SBarry Smith #define __FUNCT__ "MatImaginaryPart_MPIBAIJ" 194499cafbc1SBarry Smith PetscErrorCode MatImaginaryPart_MPIBAIJ(Mat A) 194599cafbc1SBarry Smith { 194699cafbc1SBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 194799cafbc1SBarry Smith PetscErrorCode ierr; 194899cafbc1SBarry Smith 194999cafbc1SBarry Smith PetscFunctionBegin; 195099cafbc1SBarry Smith ierr = MatImaginaryPart(a->A);CHKERRQ(ierr); 195199cafbc1SBarry Smith ierr = MatImaginaryPart(a->B);CHKERRQ(ierr); 195299cafbc1SBarry Smith PetscFunctionReturn(0); 195399cafbc1SBarry Smith } 195499cafbc1SBarry Smith 195579bdfe76SSatish Balay /* -------------------------------------------------------------------*/ 1956cc2dc46cSBarry Smith static struct _MatOps MatOps_Values = { 1957cc2dc46cSBarry Smith MatSetValues_MPIBAIJ, 1958cc2dc46cSBarry Smith MatGetRow_MPIBAIJ, 1959cc2dc46cSBarry Smith MatRestoreRow_MPIBAIJ, 1960cc2dc46cSBarry Smith MatMult_MPIBAIJ, 196197304618SKris Buschelman /* 4*/ MatMultAdd_MPIBAIJ, 19627c922b88SBarry Smith MatMultTranspose_MPIBAIJ, 19637c922b88SBarry Smith MatMultTransposeAdd_MPIBAIJ, 1964cc2dc46cSBarry Smith 0, 1965cc2dc46cSBarry Smith 0, 1966cc2dc46cSBarry Smith 0, 196797304618SKris Buschelman /*10*/ 0, 1968cc2dc46cSBarry Smith 0, 1969cc2dc46cSBarry Smith 0, 1970cc2dc46cSBarry Smith 0, 1971cc2dc46cSBarry Smith MatTranspose_MPIBAIJ, 197297304618SKris Buschelman /*15*/ MatGetInfo_MPIBAIJ, 19737fc3c18eSBarry Smith MatEqual_MPIBAIJ, 1974cc2dc46cSBarry Smith MatGetDiagonal_MPIBAIJ, 1975cc2dc46cSBarry Smith MatDiagonalScale_MPIBAIJ, 1976cc2dc46cSBarry Smith MatNorm_MPIBAIJ, 197797304618SKris Buschelman /*20*/ MatAssemblyBegin_MPIBAIJ, 1978cc2dc46cSBarry Smith MatAssemblyEnd_MPIBAIJ, 1979cc2dc46cSBarry Smith 0, 1980cc2dc46cSBarry Smith MatSetOption_MPIBAIJ, 1981cc2dc46cSBarry Smith MatZeroEntries_MPIBAIJ, 198297304618SKris Buschelman /*25*/ MatZeroRows_MPIBAIJ, 1983cc2dc46cSBarry Smith 0, 1984cc2dc46cSBarry Smith 0, 1985cc2dc46cSBarry Smith 0, 1986cc2dc46cSBarry Smith 0, 198797304618SKris Buschelman /*30*/ MatSetUpPreallocation_MPIBAIJ, 1988273d9f13SBarry Smith 0, 1989cc2dc46cSBarry Smith 0, 1990cc2dc46cSBarry Smith 0, 1991cc2dc46cSBarry Smith 0, 199297304618SKris Buschelman /*35*/ MatDuplicate_MPIBAIJ, 1993cc2dc46cSBarry Smith 0, 1994cc2dc46cSBarry Smith 0, 1995cc2dc46cSBarry Smith 0, 1996cc2dc46cSBarry Smith 0, 19974fe895cdSHong Zhang /*40*/ MatAXPY_MPIBAIJ, 1998cc2dc46cSBarry Smith MatGetSubMatrices_MPIBAIJ, 1999cc2dc46cSBarry Smith MatIncreaseOverlap_MPIBAIJ, 2000cc2dc46cSBarry Smith MatGetValues_MPIBAIJ, 20013c896bc6SHong Zhang MatCopy_MPIBAIJ, 2002*8c07d4e3SBarry Smith /*45*/ 0, 2003cc2dc46cSBarry Smith MatScale_MPIBAIJ, 2004cc2dc46cSBarry Smith 0, 2005cc2dc46cSBarry Smith 0, 2006cc2dc46cSBarry Smith 0, 2007521d7252SBarry Smith /*50*/ 0, 2008cc2dc46cSBarry Smith 0, 2009cc2dc46cSBarry Smith 0, 2010cc2dc46cSBarry Smith 0, 2011cc2dc46cSBarry Smith 0, 201297304618SKris Buschelman /*55*/ 0, 2013cc2dc46cSBarry Smith 0, 2014cc2dc46cSBarry Smith MatSetUnfactored_MPIBAIJ, 2015cc2dc46cSBarry Smith 0, 2016cc2dc46cSBarry Smith MatSetValuesBlocked_MPIBAIJ, 201797304618SKris Buschelman /*60*/ 0, 2018f14a1c24SBarry Smith MatDestroy_MPIBAIJ, 2019f14a1c24SBarry Smith MatView_MPIBAIJ, 2020357abbc8SBarry Smith 0, 20217843d17aSBarry Smith 0, 202297304618SKris Buschelman /*65*/ 0, 20237843d17aSBarry Smith 0, 20247843d17aSBarry Smith 0, 20257843d17aSBarry Smith 0, 20267843d17aSBarry Smith 0, 202797304618SKris Buschelman /*70*/ MatGetRowMax_MPIBAIJ, 20287843d17aSBarry Smith 0, 202997304618SKris Buschelman 0, 203097304618SKris Buschelman 0, 203197304618SKris Buschelman 0, 203297304618SKris Buschelman /*75*/ 0, 203397304618SKris Buschelman 0, 203497304618SKris Buschelman 0, 203597304618SKris Buschelman 0, 203697304618SKris Buschelman 0, 203797304618SKris Buschelman /*80*/ 0, 203897304618SKris Buschelman 0, 203997304618SKris Buschelman 0, 204097304618SKris Buschelman 0, 2041865e5f61SKris Buschelman MatLoad_MPIBAIJ, 2042865e5f61SKris Buschelman /*85*/ 0, 2043865e5f61SKris Buschelman 0, 2044865e5f61SKris Buschelman 0, 2045865e5f61SKris Buschelman 0, 2046865e5f61SKris Buschelman 0, 2047865e5f61SKris Buschelman /*90*/ 0, 2048865e5f61SKris Buschelman 0, 2049865e5f61SKris Buschelman 0, 2050865e5f61SKris Buschelman 0, 2051865e5f61SKris Buschelman 0, 2052865e5f61SKris Buschelman /*95*/ 0, 2053865e5f61SKris Buschelman 0, 2054865e5f61SKris Buschelman 0, 205599cafbc1SBarry Smith 0, 205699cafbc1SBarry Smith 0, 205799cafbc1SBarry Smith /*100*/0, 205899cafbc1SBarry Smith 0, 205999cafbc1SBarry Smith 0, 206099cafbc1SBarry Smith 0, 206199cafbc1SBarry Smith 0, 206299cafbc1SBarry Smith /*105*/0, 206399cafbc1SBarry Smith MatRealPart_MPIBAIJ, 206499cafbc1SBarry Smith MatImaginaryPart_MPIBAIJ}; 206579bdfe76SSatish Balay 20665ef9f2a5SBarry Smith 2067e18c124aSSatish Balay EXTERN_C_BEGIN 20684a2ae208SSatish Balay #undef __FUNCT__ 20694a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonalBlock_MPIBAIJ" 2070be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatGetDiagonalBlock_MPIBAIJ(Mat A,PetscTruth *iscopy,MatReuse reuse,Mat *a) 20715ef9f2a5SBarry Smith { 20725ef9f2a5SBarry Smith PetscFunctionBegin; 20735ef9f2a5SBarry Smith *a = ((Mat_MPIBAIJ *)A->data)->A; 20745ef9f2a5SBarry Smith *iscopy = PETSC_FALSE; 20755ef9f2a5SBarry Smith PetscFunctionReturn(0); 20765ef9f2a5SBarry Smith } 2077e18c124aSSatish Balay EXTERN_C_END 207879bdfe76SSatish Balay 2079273d9f13SBarry Smith EXTERN_C_BEGIN 2080f69a0ea3SMatthew Knepley extern PetscErrorCode PETSCMAT_DLLEXPORT MatConvert_MPIBAIJ_MPISBAIJ(Mat, MatType,MatReuse,Mat*); 2081d94109b8SHong Zhang EXTERN_C_END 2082d94109b8SHong Zhang 2083aac34f13SBarry Smith #undef __FUNCT__ 2084aac34f13SBarry Smith #define __FUNCT__ "MatMPIBAIJSetPreallocationCSR_MPIBAIJ" 2085b7940d39SSatish Balay PetscErrorCode MatMPIBAIJSetPreallocationCSR_MPIBAIJ(Mat B,PetscInt bs,const PetscInt Ii[],const PetscInt J[],const PetscScalar v[]) 2086aac34f13SBarry Smith { 2087899cda47SBarry Smith Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)B->data; 2088899cda47SBarry Smith PetscInt m = B->rmap.n/bs,cstart = baij->cstartbs, cend = baij->cendbs,j,nnz,i,d; 2089899cda47SBarry Smith PetscInt *d_nnz,*o_nnz,nnz_max = 0,rstart = baij->rstartbs,ii; 2090aac34f13SBarry Smith const PetscInt *JJ; 2091aac34f13SBarry Smith PetscScalar *values; 2092aac34f13SBarry Smith PetscErrorCode ierr; 2093aac34f13SBarry Smith 2094aac34f13SBarry Smith PetscFunctionBegin; 2095aac34f13SBarry Smith #if defined(PETSC_OPT_g) 2096b7940d39SSatish Balay if (Ii[0]) SETERRQ1(PETSC_ERR_ARG_RANGE,"Ii[0] must be 0 it is %D",Ii[0]); 2097aac34f13SBarry Smith #endif 2098aac34f13SBarry Smith ierr = PetscMalloc((2*m+1)*sizeof(PetscInt),&d_nnz);CHKERRQ(ierr); 2099aac34f13SBarry Smith o_nnz = d_nnz + m; 2100aac34f13SBarry Smith 2101aac34f13SBarry Smith for (i=0; i<m; i++) { 2102b7940d39SSatish Balay nnz = Ii[i+1]- Ii[i]; 2103b7940d39SSatish Balay JJ = J + Ii[i]; 2104aac34f13SBarry Smith nnz_max = PetscMax(nnz_max,nnz); 2105aac34f13SBarry Smith #if defined(PETSC_OPT_g) 2106aac34f13SBarry Smith if (nnz < 0) SETERRQ1(PETSC_ERR_ARG_RANGE,"Local row %D has a negative %D number of columns",i,nnz); 2107aac34f13SBarry Smith #endif 2108aac34f13SBarry Smith for (j=0; j<nnz; j++) { 2109aac34f13SBarry Smith if (*JJ >= cstart) break; 2110aac34f13SBarry Smith JJ++; 2111aac34f13SBarry Smith } 2112aac34f13SBarry Smith d = 0; 2113aac34f13SBarry Smith for (; j<nnz; j++) { 2114aac34f13SBarry Smith if (*JJ++ >= cend) break; 2115aac34f13SBarry Smith d++; 2116aac34f13SBarry Smith } 2117aac34f13SBarry Smith d_nnz[i] = d; 2118aac34f13SBarry Smith o_nnz[i] = nnz - d; 2119aac34f13SBarry Smith } 2120aac34f13SBarry Smith ierr = MatMPIBAIJSetPreallocation(B,bs,0,d_nnz,0,o_nnz);CHKERRQ(ierr); 2121aac34f13SBarry Smith ierr = PetscFree(d_nnz);CHKERRQ(ierr); 2122aac34f13SBarry Smith 2123aac34f13SBarry Smith if (v) values = (PetscScalar*)v; 2124aac34f13SBarry Smith else { 2125aac34f13SBarry Smith ierr = PetscMalloc(bs*bs*(nnz_max+1)*sizeof(PetscScalar),&values);CHKERRQ(ierr); 2126aac34f13SBarry Smith ierr = PetscMemzero(values,bs*bs*nnz_max*sizeof(PetscScalar));CHKERRQ(ierr); 2127aac34f13SBarry Smith } 2128aac34f13SBarry Smith 2129aac34f13SBarry Smith ierr = MatSetOption(B,MAT_COLUMNS_SORTED);CHKERRQ(ierr); 2130aac34f13SBarry Smith for (i=0; i<m; i++) { 2131aac34f13SBarry Smith ii = i + rstart; 2132b7940d39SSatish Balay nnz = Ii[i+1]- Ii[i]; 2133b7940d39SSatish Balay ierr = MatSetValuesBlocked_MPIBAIJ(B,1,&ii,nnz,J+Ii[i],values+(v ? Ii[i] : 0),INSERT_VALUES);CHKERRQ(ierr); 2134aac34f13SBarry Smith } 2135aac34f13SBarry Smith ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 2136aac34f13SBarry Smith ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 2137aac34f13SBarry Smith ierr = MatSetOption(B,MAT_COLUMNS_UNSORTED);CHKERRQ(ierr); 2138aac34f13SBarry Smith 2139aac34f13SBarry Smith if (!v) { 2140aac34f13SBarry Smith ierr = PetscFree(values);CHKERRQ(ierr); 2141aac34f13SBarry Smith } 2142aac34f13SBarry Smith PetscFunctionReturn(0); 2143aac34f13SBarry Smith } 2144aac34f13SBarry Smith 2145aac34f13SBarry Smith #undef __FUNCT__ 2146aac34f13SBarry Smith #define __FUNCT__ "MatMPIBAIJSetPreallocationCSR" 2147aac34f13SBarry Smith /*@C 2148aac34f13SBarry Smith MatMPIBAIJSetPreallocationCSR - Allocates memory for a sparse parallel matrix in AIJ format 2149aac34f13SBarry Smith (the default parallel PETSc format). 2150aac34f13SBarry Smith 2151aac34f13SBarry Smith Collective on MPI_Comm 2152aac34f13SBarry Smith 2153aac34f13SBarry Smith Input Parameters: 2154aac34f13SBarry Smith + A - the matrix 2155aac34f13SBarry Smith . i - the indices into j for the start of each local row (starts with zero) 2156aac34f13SBarry Smith . j - the column indices for each local row (starts with zero) these must be sorted for each row 2157aac34f13SBarry Smith - v - optional values in the matrix 2158aac34f13SBarry Smith 2159aac34f13SBarry Smith Level: developer 2160aac34f13SBarry Smith 2161aac34f13SBarry Smith .keywords: matrix, aij, compressed row, sparse, parallel 2162aac34f13SBarry Smith 2163aac34f13SBarry Smith .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatMPIBAIJSetPreallocation(), MatCreateMPIAIJ(), MPIAIJ 2164aac34f13SBarry Smith @*/ 2165be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPIBAIJSetPreallocationCSR(Mat B,PetscInt bs,const PetscInt i[],const PetscInt j[], const PetscScalar v[]) 2166aac34f13SBarry Smith { 2167aac34f13SBarry Smith PetscErrorCode ierr,(*f)(Mat,PetscInt,const PetscInt[],const PetscInt[],const PetscScalar[]); 2168aac34f13SBarry Smith 2169aac34f13SBarry Smith PetscFunctionBegin; 2170aac34f13SBarry Smith ierr = PetscObjectQueryFunction((PetscObject)B,"MatMPIBAIJSetPreallocationCSR_C",(void (**)(void))&f);CHKERRQ(ierr); 2171aac34f13SBarry Smith if (f) { 2172aac34f13SBarry Smith ierr = (*f)(B,bs,i,j,v);CHKERRQ(ierr); 2173aac34f13SBarry Smith } 2174aac34f13SBarry Smith PetscFunctionReturn(0); 2175aac34f13SBarry Smith } 2176aac34f13SBarry Smith 2177d94109b8SHong Zhang EXTERN_C_BEGIN 21784a2ae208SSatish Balay #undef __FUNCT__ 2179a23d5eceSKris Buschelman #define __FUNCT__ "MatMPIBAIJSetPreallocation_MPIBAIJ" 2180be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPIBAIJSetPreallocation_MPIBAIJ(Mat B,PetscInt bs,PetscInt d_nz,PetscInt *d_nnz,PetscInt o_nz,PetscInt *o_nnz) 2181a23d5eceSKris Buschelman { 2182a23d5eceSKris Buschelman Mat_MPIBAIJ *b; 2183dfbe8321SBarry Smith PetscErrorCode ierr; 2184b24ad042SBarry Smith PetscInt i; 2185a23d5eceSKris Buschelman 2186a23d5eceSKris Buschelman PetscFunctionBegin; 2187a23d5eceSKris Buschelman B->preallocated = PETSC_TRUE; 2188*8c07d4e3SBarry Smith ierr = PetscOptionsBegin(B->comm,B->prefix,"Options for MPIBAIJ matrix","Mat");CHKERRQ(ierr); 2189*8c07d4e3SBarry Smith ierr = PetscOptionsInt("-mat_block_size","Set the blocksize used to store the matrix","MatMPIBAIJSetPreallocation",bs,&bs,PETSC_NULL);CHKERRQ(ierr); 2190*8c07d4e3SBarry Smith ierr = PetscOptionsEnd();CHKERRQ(ierr); 2191a23d5eceSKris Buschelman 2192a23d5eceSKris Buschelman if (bs < 1) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Invalid block size specified, must be positive"); 2193a23d5eceSKris Buschelman if (d_nz == PETSC_DEFAULT || d_nz == PETSC_DECIDE) d_nz = 5; 2194a23d5eceSKris Buschelman if (o_nz == PETSC_DEFAULT || o_nz == PETSC_DECIDE) o_nz = 2; 219577431f27SBarry Smith if (d_nz < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"d_nz cannot be less than 0: value %D",d_nz); 219677431f27SBarry Smith if (o_nz < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"o_nz cannot be less than 0: value %D",o_nz); 2197899cda47SBarry Smith 2198899cda47SBarry Smith B->rmap.bs = bs; 2199899cda47SBarry Smith B->cmap.bs = bs; 2200899cda47SBarry Smith ierr = PetscMapInitialize(B->comm,&B->rmap);CHKERRQ(ierr); 2201899cda47SBarry Smith ierr = PetscMapInitialize(B->comm,&B->cmap);CHKERRQ(ierr); 2202899cda47SBarry Smith 2203a23d5eceSKris Buschelman if (d_nnz) { 2204899cda47SBarry Smith for (i=0; i<B->rmap.n/bs; i++) { 220577431f27SBarry Smith if (d_nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"d_nnz cannot be less than -1: local row %D value %D",i,d_nnz[i]); 2206a23d5eceSKris Buschelman } 2207a23d5eceSKris Buschelman } 2208a23d5eceSKris Buschelman if (o_nnz) { 2209899cda47SBarry Smith for (i=0; i<B->rmap.n/bs; i++) { 221077431f27SBarry Smith if (o_nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"o_nnz cannot be less than -1: local row %D value %D",i,o_nnz[i]); 2211a23d5eceSKris Buschelman } 2212a23d5eceSKris Buschelman } 2213a23d5eceSKris Buschelman 2214a23d5eceSKris Buschelman b = (Mat_MPIBAIJ*)B->data; 2215a23d5eceSKris Buschelman b->bs2 = bs*bs; 2216899cda47SBarry Smith b->mbs = B->rmap.n/bs; 2217899cda47SBarry Smith b->nbs = B->cmap.n/bs; 2218899cda47SBarry Smith b->Mbs = B->rmap.N/bs; 2219899cda47SBarry Smith b->Nbs = B->cmap.N/bs; 2220a23d5eceSKris Buschelman 2221a23d5eceSKris Buschelman for (i=0; i<=b->size; i++) { 2222899cda47SBarry Smith b->rangebs[i] = B->rmap.range[i]/bs; 2223a23d5eceSKris Buschelman } 2224899cda47SBarry Smith b->rstartbs = B->rmap.rstart/bs; 2225899cda47SBarry Smith b->rendbs = B->rmap.rend/bs; 2226899cda47SBarry Smith b->cstartbs = B->cmap.rstart/bs; 2227899cda47SBarry Smith b->cendbs = B->cmap.rend/bs; 2228a23d5eceSKris Buschelman 2229f69a0ea3SMatthew Knepley ierr = MatCreate(PETSC_COMM_SELF,&b->A);CHKERRQ(ierr); 2230899cda47SBarry Smith ierr = MatSetSizes(b->A,B->rmap.n,B->cmap.n,B->rmap.n,B->cmap.n);CHKERRQ(ierr); 22319c097c71SKris Buschelman ierr = MatSetType(b->A,MATSEQBAIJ);CHKERRQ(ierr); 2232c60e587dSKris Buschelman ierr = MatSeqBAIJSetPreallocation(b->A,bs,d_nz,d_nnz);CHKERRQ(ierr); 223352e6d16bSBarry Smith ierr = PetscLogObjectParent(B,b->A);CHKERRQ(ierr); 2234f69a0ea3SMatthew Knepley ierr = MatCreate(PETSC_COMM_SELF,&b->B);CHKERRQ(ierr); 2235899cda47SBarry Smith ierr = MatSetSizes(b->B,B->rmap.n,B->cmap.N,B->rmap.n,B->cmap.N);CHKERRQ(ierr); 22369c097c71SKris Buschelman ierr = MatSetType(b->B,MATSEQBAIJ);CHKERRQ(ierr); 2237c60e587dSKris Buschelman ierr = MatSeqBAIJSetPreallocation(b->B,bs,o_nz,o_nnz);CHKERRQ(ierr); 223852e6d16bSBarry Smith ierr = PetscLogObjectParent(B,b->B);CHKERRQ(ierr); 2239c60e587dSKris Buschelman 2240a23d5eceSKris Buschelman ierr = MatStashCreate_Private(B->comm,bs,&B->bstash);CHKERRQ(ierr); 2241a23d5eceSKris Buschelman 2242a23d5eceSKris Buschelman PetscFunctionReturn(0); 2243a23d5eceSKris Buschelman } 2244a23d5eceSKris Buschelman EXTERN_C_END 2245a23d5eceSKris Buschelman 2246a23d5eceSKris Buschelman EXTERN_C_BEGIN 2247be1d678aSKris Buschelman EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatDiagonalScaleLocal_MPIBAIJ(Mat,Vec); 2248be1d678aSKris Buschelman EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatSetHashTableFactor_MPIBAIJ(Mat,PetscReal); 224992b32695SKris Buschelman EXTERN_C_END 22505bf65638SKris Buschelman 22510bad9183SKris Buschelman /*MC 2252fafad747SKris Buschelman MATMPIBAIJ - MATMPIBAIJ = "mpibaij" - A matrix type to be used for distributed block sparse matrices. 22530bad9183SKris Buschelman 22540bad9183SKris Buschelman Options Database Keys: 2255*8c07d4e3SBarry Smith + -mat_type mpibaij - sets the matrix type to "mpibaij" during a call to MatSetFromOptions() 2256*8c07d4e3SBarry Smith . -mat_block_size <bs> - set the blocksize used to store the matrix 2257*8c07d4e3SBarry Smith - -mat_use_hash_table <fact> 22580bad9183SKris Buschelman 22590bad9183SKris Buschelman Level: beginner 22600bad9183SKris Buschelman 22610bad9183SKris Buschelman .seealso: MatCreateMPIBAIJ 22620bad9183SKris Buschelman M*/ 22630bad9183SKris Buschelman 226492b32695SKris Buschelman EXTERN_C_BEGIN 2265a23d5eceSKris Buschelman #undef __FUNCT__ 22664a2ae208SSatish Balay #define __FUNCT__ "MatCreate_MPIBAIJ" 2267be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreate_MPIBAIJ(Mat B) 2268273d9f13SBarry Smith { 2269273d9f13SBarry Smith Mat_MPIBAIJ *b; 2270dfbe8321SBarry Smith PetscErrorCode ierr; 2271273d9f13SBarry Smith PetscTruth flg; 2272273d9f13SBarry Smith 2273273d9f13SBarry Smith PetscFunctionBegin; 227482502324SSatish Balay ierr = PetscNew(Mat_MPIBAIJ,&b);CHKERRQ(ierr); 227582502324SSatish Balay B->data = (void*)b; 227682502324SSatish Balay 2277085a36d4SBarry Smith 2278273d9f13SBarry Smith ierr = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr); 2279273d9f13SBarry Smith B->mapping = 0; 2280273d9f13SBarry Smith B->factor = 0; 2281273d9f13SBarry Smith B->assembled = PETSC_FALSE; 2282273d9f13SBarry Smith 2283273d9f13SBarry Smith B->insertmode = NOT_SET_VALUES; 2284273d9f13SBarry Smith ierr = MPI_Comm_rank(B->comm,&b->rank);CHKERRQ(ierr); 2285273d9f13SBarry Smith ierr = MPI_Comm_size(B->comm,&b->size);CHKERRQ(ierr); 2286273d9f13SBarry Smith 2287273d9f13SBarry Smith /* build local table of row and column ownerships */ 2288899cda47SBarry Smith ierr = PetscMalloc((b->size+1)*sizeof(PetscInt),&b->rangebs);CHKERRQ(ierr); 2289273d9f13SBarry Smith 2290273d9f13SBarry Smith /* build cache for off array entries formed */ 2291273d9f13SBarry Smith ierr = MatStashCreate_Private(B->comm,1,&B->stash);CHKERRQ(ierr); 2292273d9f13SBarry Smith b->donotstash = PETSC_FALSE; 2293273d9f13SBarry Smith b->colmap = PETSC_NULL; 2294273d9f13SBarry Smith b->garray = PETSC_NULL; 2295273d9f13SBarry Smith b->roworiented = PETSC_TRUE; 2296273d9f13SBarry Smith 2297cfce73b9SSatish Balay #if defined(PETSC_USE_MAT_SINGLE) 2298273d9f13SBarry Smith /* stuff for MatSetValues_XXX in single precision */ 229964a35ccbSBarry Smith b->setvalueslen = 0; 2300273d9f13SBarry Smith b->setvaluescopy = PETSC_NULL; 2301273d9f13SBarry Smith #endif 2302273d9f13SBarry Smith 2303273d9f13SBarry Smith /* stuff used in block assembly */ 2304273d9f13SBarry Smith b->barray = 0; 2305273d9f13SBarry Smith 2306273d9f13SBarry Smith /* stuff used for matrix vector multiply */ 2307273d9f13SBarry Smith b->lvec = 0; 2308273d9f13SBarry Smith b->Mvctx = 0; 2309273d9f13SBarry Smith 2310273d9f13SBarry Smith /* stuff for MatGetRow() */ 2311273d9f13SBarry Smith b->rowindices = 0; 2312273d9f13SBarry Smith b->rowvalues = 0; 2313273d9f13SBarry Smith b->getrowactive = PETSC_FALSE; 2314273d9f13SBarry Smith 2315273d9f13SBarry Smith /* hash table stuff */ 2316273d9f13SBarry Smith b->ht = 0; 2317273d9f13SBarry Smith b->hd = 0; 2318273d9f13SBarry Smith b->ht_size = 0; 2319273d9f13SBarry Smith b->ht_flag = PETSC_FALSE; 2320273d9f13SBarry Smith b->ht_fact = 0; 2321273d9f13SBarry Smith b->ht_total_ct = 0; 2322273d9f13SBarry Smith b->ht_insert_ct = 0; 2323273d9f13SBarry Smith 2324*8c07d4e3SBarry Smith ierr = PetscOptionsBegin(B->comm,PETSC_NULL,"Options for loading MPIBAIJ matrix","Mat");CHKERRQ(ierr); 2325*8c07d4e3SBarry Smith ierr = PetscOptionsTruth("-mat_use_hash_table","Use hash table to save memory in constructing matrix","MatSetOption",PETSC_FALSE,&flg,PETSC_NULL);CHKERRQ(ierr); 2326273d9f13SBarry Smith if (flg) { 2327f6275e2eSBarry Smith PetscReal fact = 1.39; 2328273d9f13SBarry Smith ierr = MatSetOption(B,MAT_USE_HASH_TABLE);CHKERRQ(ierr); 2329*8c07d4e3SBarry Smith ierr = PetscOptionsReal("-mat_use_hash_table","Use hash table factor","MatMPIBAIJSetHashTableFactor",fact,&fact,PETSC_NULL);CHKERRQ(ierr); 2330273d9f13SBarry Smith if (fact <= 1.0) fact = 1.39; 2331273d9f13SBarry Smith ierr = MatMPIBAIJSetHashTableFactor(B,fact);CHKERRQ(ierr); 2332ae15b995SBarry Smith ierr = PetscInfo1(0,"Hash table Factor used %5.2f\n",fact);CHKERRQ(ierr); 2333273d9f13SBarry Smith } 2334*8c07d4e3SBarry Smith ierr = PetscOptionsEnd();CHKERRQ(ierr); 2335*8c07d4e3SBarry Smith 2336273d9f13SBarry Smith ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatStoreValues_C", 2337273d9f13SBarry Smith "MatStoreValues_MPIBAIJ", 2338273d9f13SBarry Smith MatStoreValues_MPIBAIJ);CHKERRQ(ierr); 2339273d9f13SBarry Smith ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatRetrieveValues_C", 2340273d9f13SBarry Smith "MatRetrieveValues_MPIBAIJ", 2341273d9f13SBarry Smith MatRetrieveValues_MPIBAIJ);CHKERRQ(ierr); 2342273d9f13SBarry Smith ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetDiagonalBlock_C", 2343273d9f13SBarry Smith "MatGetDiagonalBlock_MPIBAIJ", 2344273d9f13SBarry Smith MatGetDiagonalBlock_MPIBAIJ);CHKERRQ(ierr); 2345a23d5eceSKris Buschelman ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatMPIBAIJSetPreallocation_C", 2346a23d5eceSKris Buschelman "MatMPIBAIJSetPreallocation_MPIBAIJ", 2347a23d5eceSKris Buschelman MatMPIBAIJSetPreallocation_MPIBAIJ);CHKERRQ(ierr); 2348aac34f13SBarry Smith ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatMPIBAIJSetPreallocationCSR_C", 2349aac34f13SBarry Smith "MatMPIBAIJSetPreallocationCSR_MPIAIJ", 2350aac34f13SBarry Smith MatMPIBAIJSetPreallocationCSR_MPIBAIJ);CHKERRQ(ierr); 235192b32695SKris Buschelman ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatDiagonalScaleLocal_C", 235292b32695SKris Buschelman "MatDiagonalScaleLocal_MPIBAIJ", 235392b32695SKris Buschelman MatDiagonalScaleLocal_MPIBAIJ);CHKERRQ(ierr); 23545bf65638SKris Buschelman ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatSetHashTableFactor_C", 23555bf65638SKris Buschelman "MatSetHashTableFactor_MPIBAIJ", 23565bf65638SKris Buschelman MatSetHashTableFactor_MPIBAIJ);CHKERRQ(ierr); 2357273d9f13SBarry Smith PetscFunctionReturn(0); 2358273d9f13SBarry Smith } 2359273d9f13SBarry Smith EXTERN_C_END 2360273d9f13SBarry Smith 2361209238afSKris Buschelman /*MC 2362002d173eSKris Buschelman MATBAIJ - MATBAIJ = "baij" - A matrix type to be used for block sparse matrices. 2363209238afSKris Buschelman 2364209238afSKris Buschelman This matrix type is identical to MATSEQBAIJ when constructed with a single process communicator, 2365209238afSKris Buschelman and MATMPIBAIJ otherwise. 2366209238afSKris Buschelman 2367209238afSKris Buschelman Options Database Keys: 2368209238afSKris Buschelman . -mat_type baij - sets the matrix type to "baij" during a call to MatSetFromOptions() 2369209238afSKris Buschelman 2370209238afSKris Buschelman Level: beginner 2371209238afSKris Buschelman 2372aac34f13SBarry Smith .seealso: MatCreateMPIBAIJ(),MATSEQBAIJ,MATMPIBAIJ, MatMPIBAIJSetPreallocation(), MatMPIBAIJSetPreallocationCSR() 2373209238afSKris Buschelman M*/ 2374209238afSKris Buschelman 2375209238afSKris Buschelman EXTERN_C_BEGIN 2376209238afSKris Buschelman #undef __FUNCT__ 2377209238afSKris Buschelman #define __FUNCT__ "MatCreate_BAIJ" 2378be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreate_BAIJ(Mat A) 2379dfbe8321SBarry Smith { 23806849ba73SBarry Smith PetscErrorCode ierr; 2381b24ad042SBarry Smith PetscMPIInt size; 2382209238afSKris Buschelman 2383209238afSKris Buschelman PetscFunctionBegin; 2384209238afSKris Buschelman ierr = PetscObjectChangeTypeName((PetscObject)A,MATBAIJ);CHKERRQ(ierr); 2385209238afSKris Buschelman ierr = MPI_Comm_size(A->comm,&size);CHKERRQ(ierr); 2386209238afSKris Buschelman if (size == 1) { 2387209238afSKris Buschelman ierr = MatSetType(A,MATSEQBAIJ);CHKERRQ(ierr); 2388209238afSKris Buschelman } else { 2389209238afSKris Buschelman ierr = MatSetType(A,MATMPIBAIJ);CHKERRQ(ierr); 2390209238afSKris Buschelman } 2391209238afSKris Buschelman PetscFunctionReturn(0); 2392209238afSKris Buschelman } 2393209238afSKris Buschelman EXTERN_C_END 2394209238afSKris Buschelman 23954a2ae208SSatish Balay #undef __FUNCT__ 23964a2ae208SSatish Balay #define __FUNCT__ "MatMPIBAIJSetPreallocation" 2397273d9f13SBarry Smith /*@C 2398aac34f13SBarry Smith MatMPIBAIJSetPreallocation - Allocates memory for a sparse parallel matrix in block AIJ format 2399273d9f13SBarry Smith (block compressed row). For good matrix assembly performance 2400273d9f13SBarry Smith the user should preallocate the matrix storage by setting the parameters 2401273d9f13SBarry Smith d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 2402273d9f13SBarry Smith performance can be increased by more than a factor of 50. 2403273d9f13SBarry Smith 2404273d9f13SBarry Smith Collective on Mat 2405273d9f13SBarry Smith 2406273d9f13SBarry Smith Input Parameters: 2407273d9f13SBarry Smith + A - the matrix 2408273d9f13SBarry Smith . bs - size of blockk 2409273d9f13SBarry Smith . d_nz - number of block nonzeros per block row in diagonal portion of local 2410273d9f13SBarry Smith submatrix (same for all local rows) 2411273d9f13SBarry Smith . d_nnz - array containing the number of block nonzeros in the various block rows 2412273d9f13SBarry Smith of the in diagonal portion of the local (possibly different for each block 2413273d9f13SBarry Smith row) or PETSC_NULL. You must leave room for the diagonal entry even if it is zero. 2414273d9f13SBarry Smith . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 2415273d9f13SBarry Smith submatrix (same for all local rows). 2416273d9f13SBarry Smith - o_nnz - array containing the number of nonzeros in the various block rows of the 2417273d9f13SBarry Smith off-diagonal portion of the local submatrix (possibly different for 2418273d9f13SBarry Smith each block row) or PETSC_NULL. 2419273d9f13SBarry Smith 242049a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 2421273d9f13SBarry Smith 2422273d9f13SBarry Smith Options Database Keys: 2423*8c07d4e3SBarry Smith + -mat_block_size - size of the blocks to use 2424*8c07d4e3SBarry Smith - -mat_use_hash_table <fact> 2425273d9f13SBarry Smith 2426273d9f13SBarry Smith Notes: 2427273d9f13SBarry Smith If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one processor 2428273d9f13SBarry Smith than it must be used on all processors that share the object for that argument. 2429273d9f13SBarry Smith 2430273d9f13SBarry Smith Storage Information: 2431273d9f13SBarry Smith For a square global matrix we define each processor's diagonal portion 2432273d9f13SBarry Smith to be its local rows and the corresponding columns (a square submatrix); 2433273d9f13SBarry Smith each processor's off-diagonal portion encompasses the remainder of the 2434273d9f13SBarry Smith local matrix (a rectangular submatrix). 2435273d9f13SBarry Smith 2436273d9f13SBarry Smith The user can specify preallocated storage for the diagonal part of 2437273d9f13SBarry Smith the local submatrix with either d_nz or d_nnz (not both). Set 2438273d9f13SBarry Smith d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic 2439273d9f13SBarry Smith memory allocation. Likewise, specify preallocated storage for the 2440273d9f13SBarry Smith off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 2441273d9f13SBarry Smith 2442273d9f13SBarry Smith Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 2443273d9f13SBarry Smith the figure below we depict these three local rows and all columns (0-11). 2444273d9f13SBarry Smith 2445273d9f13SBarry Smith .vb 2446273d9f13SBarry Smith 0 1 2 3 4 5 6 7 8 9 10 11 2447273d9f13SBarry Smith ------------------- 2448273d9f13SBarry Smith row 3 | o o o d d d o o o o o o 2449273d9f13SBarry Smith row 4 | o o o d d d o o o o o o 2450273d9f13SBarry Smith row 5 | o o o d d d o o o o o o 2451273d9f13SBarry Smith ------------------- 2452273d9f13SBarry Smith .ve 2453273d9f13SBarry Smith 2454273d9f13SBarry Smith Thus, any entries in the d locations are stored in the d (diagonal) 2455273d9f13SBarry Smith submatrix, and any entries in the o locations are stored in the 2456273d9f13SBarry Smith o (off-diagonal) submatrix. Note that the d and the o submatrices are 2457273d9f13SBarry Smith stored simply in the MATSEQBAIJ format for compressed row storage. 2458273d9f13SBarry Smith 2459273d9f13SBarry Smith Now d_nz should indicate the number of block nonzeros per row in the d matrix, 2460273d9f13SBarry Smith and o_nz should indicate the number of block nonzeros per row in the o matrix. 2461273d9f13SBarry Smith In general, for PDE problems in which most nonzeros are near the diagonal, 2462273d9f13SBarry Smith one expects d_nz >> o_nz. For large problems you MUST preallocate memory 2463273d9f13SBarry Smith or you will get TERRIBLE performance; see the users' manual chapter on 2464273d9f13SBarry Smith matrices. 2465273d9f13SBarry Smith 2466273d9f13SBarry Smith Level: intermediate 2467273d9f13SBarry Smith 2468273d9f13SBarry Smith .keywords: matrix, block, aij, compressed row, sparse, parallel 2469273d9f13SBarry Smith 2470aac34f13SBarry Smith .seealso: MatCreate(), MatCreateSeqBAIJ(), MatSetValues(), MatCreateMPIBAIJ(), MatMPIBAIJSetPreallocationCSR() 2471273d9f13SBarry Smith @*/ 2472be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPIBAIJSetPreallocation(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[]) 2473273d9f13SBarry Smith { 2474b24ad042SBarry Smith PetscErrorCode ierr,(*f)(Mat,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[]); 2475273d9f13SBarry Smith 2476273d9f13SBarry Smith PetscFunctionBegin; 2477a23d5eceSKris Buschelman ierr = PetscObjectQueryFunction((PetscObject)B,"MatMPIBAIJSetPreallocation_C",(void (**)(void))&f);CHKERRQ(ierr); 2478a23d5eceSKris Buschelman if (f) { 2479a23d5eceSKris Buschelman ierr = (*f)(B,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr); 2480273d9f13SBarry Smith } 2481273d9f13SBarry Smith PetscFunctionReturn(0); 2482273d9f13SBarry Smith } 2483273d9f13SBarry Smith 24844a2ae208SSatish Balay #undef __FUNCT__ 24854a2ae208SSatish Balay #define __FUNCT__ "MatCreateMPIBAIJ" 248679bdfe76SSatish Balay /*@C 248779bdfe76SSatish Balay MatCreateMPIBAIJ - Creates a sparse parallel matrix in block AIJ format 248879bdfe76SSatish Balay (block compressed row). For good matrix assembly performance 248979bdfe76SSatish Balay the user should preallocate the matrix storage by setting the parameters 249079bdfe76SSatish Balay d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 249179bdfe76SSatish Balay performance can be increased by more than a factor of 50. 249279bdfe76SSatish Balay 2493db81eaa0SLois Curfman McInnes Collective on MPI_Comm 2494db81eaa0SLois Curfman McInnes 249579bdfe76SSatish Balay Input Parameters: 2496db81eaa0SLois Curfman McInnes + comm - MPI communicator 249779bdfe76SSatish Balay . bs - size of blockk 249879bdfe76SSatish Balay . m - number of local rows (or PETSC_DECIDE to have calculated if M is given) 249992e8d321SLois Curfman McInnes This value should be the same as the local size used in creating the 250092e8d321SLois Curfman McInnes y vector for the matrix-vector product y = Ax. 250192e8d321SLois Curfman McInnes . n - number of local columns (or PETSC_DECIDE to have calculated if N is given) 250292e8d321SLois Curfman McInnes This value should be the same as the local size used in creating the 250392e8d321SLois Curfman McInnes x vector for the matrix-vector product y = Ax. 2504be79a94dSBarry Smith . M - number of global rows (or PETSC_DETERMINE to have calculated if m is given) 2505be79a94dSBarry Smith . N - number of global columns (or PETSC_DETERMINE to have calculated if n is given) 250647a75d0bSBarry Smith . d_nz - number of nonzero blocks per block row in diagonal portion of local 250779bdfe76SSatish Balay submatrix (same for all local rows) 250847a75d0bSBarry Smith . d_nnz - array containing the number of nonzero blocks in the various block rows 250992e8d321SLois Curfman McInnes of the in diagonal portion of the local (possibly different for each block 2510db81eaa0SLois Curfman McInnes row) or PETSC_NULL. You must leave room for the diagonal entry even if it is zero. 251147a75d0bSBarry Smith . o_nz - number of nonzero blocks per block row in the off-diagonal portion of local 251279bdfe76SSatish Balay submatrix (same for all local rows). 251347a75d0bSBarry Smith - o_nnz - array containing the number of nonzero blocks in the various block rows of the 251492e8d321SLois Curfman McInnes off-diagonal portion of the local submatrix (possibly different for 251592e8d321SLois Curfman McInnes each block row) or PETSC_NULL. 251679bdfe76SSatish Balay 251779bdfe76SSatish Balay Output Parameter: 251879bdfe76SSatish Balay . A - the matrix 251979bdfe76SSatish Balay 2520db81eaa0SLois Curfman McInnes Options Database Keys: 2521*8c07d4e3SBarry Smith + -mat_block_size - size of the blocks to use 2522*8c07d4e3SBarry Smith - -mat_use_hash_table <fact> 25233ffaccefSLois Curfman McInnes 2524b259b22eSLois Curfman McInnes Notes: 252549a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 252649a6f317SBarry Smith 252747a75d0bSBarry Smith A nonzero block is any block that as 1 or more nonzeros in it 252847a75d0bSBarry Smith 252979bdfe76SSatish Balay The user MUST specify either the local or global matrix dimensions 253079bdfe76SSatish Balay (possibly both). 253179bdfe76SSatish Balay 2532be79a94dSBarry Smith If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one processor 2533be79a94dSBarry Smith than it must be used on all processors that share the object for that argument. 2534be79a94dSBarry Smith 253579bdfe76SSatish Balay Storage Information: 253679bdfe76SSatish Balay For a square global matrix we define each processor's diagonal portion 253779bdfe76SSatish Balay to be its local rows and the corresponding columns (a square submatrix); 253879bdfe76SSatish Balay each processor's off-diagonal portion encompasses the remainder of the 253979bdfe76SSatish Balay local matrix (a rectangular submatrix). 254079bdfe76SSatish Balay 254179bdfe76SSatish Balay The user can specify preallocated storage for the diagonal part of 254279bdfe76SSatish Balay the local submatrix with either d_nz or d_nnz (not both). Set 254379bdfe76SSatish Balay d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic 254479bdfe76SSatish Balay memory allocation. Likewise, specify preallocated storage for the 254579bdfe76SSatish Balay off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 254679bdfe76SSatish Balay 254779bdfe76SSatish Balay Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 254879bdfe76SSatish Balay the figure below we depict these three local rows and all columns (0-11). 254979bdfe76SSatish Balay 2550db81eaa0SLois Curfman McInnes .vb 2551db81eaa0SLois Curfman McInnes 0 1 2 3 4 5 6 7 8 9 10 11 2552db81eaa0SLois Curfman McInnes ------------------- 2553db81eaa0SLois Curfman McInnes row 3 | o o o d d d o o o o o o 2554db81eaa0SLois Curfman McInnes row 4 | o o o d d d o o o o o o 2555db81eaa0SLois Curfman McInnes row 5 | o o o d d d o o o o o o 2556db81eaa0SLois Curfman McInnes ------------------- 2557db81eaa0SLois Curfman McInnes .ve 255879bdfe76SSatish Balay 255979bdfe76SSatish Balay Thus, any entries in the d locations are stored in the d (diagonal) 256079bdfe76SSatish Balay submatrix, and any entries in the o locations are stored in the 256179bdfe76SSatish Balay o (off-diagonal) submatrix. Note that the d and the o submatrices are 256257b952d6SSatish Balay stored simply in the MATSEQBAIJ format for compressed row storage. 256379bdfe76SSatish Balay 2564d64ed03dSBarry Smith Now d_nz should indicate the number of block nonzeros per row in the d matrix, 2565d64ed03dSBarry Smith and o_nz should indicate the number of block nonzeros per row in the o matrix. 256679bdfe76SSatish Balay In general, for PDE problems in which most nonzeros are near the diagonal, 256792e8d321SLois Curfman McInnes one expects d_nz >> o_nz. For large problems you MUST preallocate memory 256892e8d321SLois Curfman McInnes or you will get TERRIBLE performance; see the users' manual chapter on 25696da5968aSLois Curfman McInnes matrices. 257079bdfe76SSatish Balay 2571027ccd11SLois Curfman McInnes Level: intermediate 2572027ccd11SLois Curfman McInnes 257392e8d321SLois Curfman McInnes .keywords: matrix, block, aij, compressed row, sparse, parallel 257479bdfe76SSatish Balay 2575aac34f13SBarry Smith .seealso: MatCreate(), MatCreateSeqBAIJ(), MatSetValues(), MatCreateMPIBAIJ(), MatMPIBAIJSetPreallocation(), MatMPIBAIJSetPreallocationCSR() 257679bdfe76SSatish Balay @*/ 2577be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreateMPIBAIJ(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[],Mat *A) 257879bdfe76SSatish Balay { 25796849ba73SBarry Smith PetscErrorCode ierr; 2580b24ad042SBarry Smith PetscMPIInt size; 258179bdfe76SSatish Balay 2582d64ed03dSBarry Smith PetscFunctionBegin; 2583f69a0ea3SMatthew Knepley ierr = MatCreate(comm,A);CHKERRQ(ierr); 2584f69a0ea3SMatthew Knepley ierr = MatSetSizes(*A,m,n,M,N);CHKERRQ(ierr); 2585d132466eSBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 2586273d9f13SBarry Smith if (size > 1) { 2587273d9f13SBarry Smith ierr = MatSetType(*A,MATMPIBAIJ);CHKERRQ(ierr); 2588273d9f13SBarry Smith ierr = MatMPIBAIJSetPreallocation(*A,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr); 2589273d9f13SBarry Smith } else { 2590273d9f13SBarry Smith ierr = MatSetType(*A,MATSEQBAIJ);CHKERRQ(ierr); 2591273d9f13SBarry Smith ierr = MatSeqBAIJSetPreallocation(*A,bs,d_nz,d_nnz);CHKERRQ(ierr); 25923914022bSBarry Smith } 25933a40ed3dSBarry Smith PetscFunctionReturn(0); 259479bdfe76SSatish Balay } 2595026e39d0SSatish Balay 25964a2ae208SSatish Balay #undef __FUNCT__ 25974a2ae208SSatish Balay #define __FUNCT__ "MatDuplicate_MPIBAIJ" 25986849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIBAIJ(Mat matin,MatDuplicateOption cpvalues,Mat *newmat) 25990ac07820SSatish Balay { 26000ac07820SSatish Balay Mat mat; 26010ac07820SSatish Balay Mat_MPIBAIJ *a,*oldmat = (Mat_MPIBAIJ*)matin->data; 2602dfbe8321SBarry Smith PetscErrorCode ierr; 2603b24ad042SBarry Smith PetscInt len=0; 26040ac07820SSatish Balay 2605d64ed03dSBarry Smith PetscFunctionBegin; 26060ac07820SSatish Balay *newmat = 0; 2607f69a0ea3SMatthew Knepley ierr = MatCreate(matin->comm,&mat);CHKERRQ(ierr); 2608899cda47SBarry Smith ierr = MatSetSizes(mat,matin->rmap.n,matin->cmap.n,matin->rmap.N,matin->cmap.N);CHKERRQ(ierr); 2609be5d1d56SKris Buschelman ierr = MatSetType(mat,matin->type_name);CHKERRQ(ierr); 26101d5dac46SHong Zhang ierr = PetscMemcpy(mat->ops,matin->ops,sizeof(struct _MatOps));CHKERRQ(ierr); 26117fff6886SHong Zhang 26124beb1cfeSHong Zhang mat->factor = matin->factor; 2613273d9f13SBarry Smith mat->preallocated = PETSC_TRUE; 26140ac07820SSatish Balay mat->assembled = PETSC_TRUE; 26157fff6886SHong Zhang mat->insertmode = NOT_SET_VALUES; 26167fff6886SHong Zhang 2617273d9f13SBarry Smith a = (Mat_MPIBAIJ*)mat->data; 2618899cda47SBarry Smith mat->rmap.bs = matin->rmap.bs; 26190ac07820SSatish Balay a->bs2 = oldmat->bs2; 26200ac07820SSatish Balay a->mbs = oldmat->mbs; 26210ac07820SSatish Balay a->nbs = oldmat->nbs; 26220ac07820SSatish Balay a->Mbs = oldmat->Mbs; 26230ac07820SSatish Balay a->Nbs = oldmat->Nbs; 26240ac07820SSatish Balay 2625899cda47SBarry Smith ierr = PetscMapCopy(matin->comm,&matin->rmap,&mat->rmap);CHKERRQ(ierr); 2626899cda47SBarry Smith ierr = PetscMapCopy(matin->comm,&matin->cmap,&mat->cmap);CHKERRQ(ierr); 2627899cda47SBarry Smith 26280ac07820SSatish Balay a->size = oldmat->size; 26290ac07820SSatish Balay a->rank = oldmat->rank; 2630aef5e8e0SSatish Balay a->donotstash = oldmat->donotstash; 2631aef5e8e0SSatish Balay a->roworiented = oldmat->roworiented; 2632aef5e8e0SSatish Balay a->rowindices = 0; 26330ac07820SSatish Balay a->rowvalues = 0; 26340ac07820SSatish Balay a->getrowactive = PETSC_FALSE; 263530793edcSSatish Balay a->barray = 0; 2636899cda47SBarry Smith a->rstartbs = oldmat->rstartbs; 2637899cda47SBarry Smith a->rendbs = oldmat->rendbs; 2638899cda47SBarry Smith a->cstartbs = oldmat->cstartbs; 2639899cda47SBarry Smith a->cendbs = oldmat->cendbs; 26400ac07820SSatish Balay 2641133cdb44SSatish Balay /* hash table stuff */ 2642133cdb44SSatish Balay a->ht = 0; 2643133cdb44SSatish Balay a->hd = 0; 2644133cdb44SSatish Balay a->ht_size = 0; 2645133cdb44SSatish Balay a->ht_flag = oldmat->ht_flag; 264625fdafccSSatish Balay a->ht_fact = oldmat->ht_fact; 2647133cdb44SSatish Balay a->ht_total_ct = 0; 2648133cdb44SSatish Balay a->ht_insert_ct = 0; 2649133cdb44SSatish Balay 2650899cda47SBarry Smith ierr = PetscMemcpy(a->rangebs,oldmat->rangebs,(a->size+1)*sizeof(PetscInt));CHKERRQ(ierr); 26518798bf22SSatish Balay ierr = MatStashCreate_Private(matin->comm,1,&mat->stash);CHKERRQ(ierr); 2652899cda47SBarry Smith ierr = MatStashCreate_Private(matin->comm,matin->rmap.bs,&mat->bstash);CHKERRQ(ierr); 26530ac07820SSatish Balay if (oldmat->colmap) { 2654aa482453SBarry Smith #if defined (PETSC_USE_CTABLE) 26550f5bd95cSBarry Smith ierr = PetscTableCreateCopy(oldmat->colmap,&a->colmap);CHKERRQ(ierr); 265648e59246SSatish Balay #else 2657b24ad042SBarry Smith ierr = PetscMalloc((a->Nbs)*sizeof(PetscInt),&a->colmap);CHKERRQ(ierr); 265852e6d16bSBarry Smith ierr = PetscLogObjectMemory(mat,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr); 2659b24ad042SBarry Smith ierr = PetscMemcpy(a->colmap,oldmat->colmap,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr); 266048e59246SSatish Balay #endif 26610ac07820SSatish Balay } else a->colmap = 0; 26624beb1cfeSHong Zhang 26630ac07820SSatish Balay if (oldmat->garray && (len = ((Mat_SeqBAIJ*)(oldmat->B->data))->nbs)) { 2664b24ad042SBarry Smith ierr = PetscMalloc(len*sizeof(PetscInt),&a->garray);CHKERRQ(ierr); 266552e6d16bSBarry Smith ierr = PetscLogObjectMemory(mat,len*sizeof(PetscInt));CHKERRQ(ierr); 2666b24ad042SBarry Smith ierr = PetscMemcpy(a->garray,oldmat->garray,len*sizeof(PetscInt));CHKERRQ(ierr); 26670ac07820SSatish Balay } else a->garray = 0; 26680ac07820SSatish Balay 26690ac07820SSatish Balay ierr = VecDuplicate(oldmat->lvec,&a->lvec);CHKERRQ(ierr); 267052e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->lvec);CHKERRQ(ierr); 26710ac07820SSatish Balay ierr = VecScatterCopy(oldmat->Mvctx,&a->Mvctx);CHKERRQ(ierr); 267252e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->Mvctx);CHKERRQ(ierr); 26737fff6886SHong Zhang 26742e8a6d31SBarry Smith ierr = MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr); 267552e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->A);CHKERRQ(ierr); 26762e8a6d31SBarry Smith ierr = MatDuplicate(oldmat->B,cpvalues,&a->B);CHKERRQ(ierr); 267752e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->B);CHKERRQ(ierr); 2678b0a32e0cSBarry Smith ierr = PetscFListDuplicate(matin->qlist,&mat->qlist);CHKERRQ(ierr); 26790ac07820SSatish Balay *newmat = mat; 26804beb1cfeSHong Zhang 26813a40ed3dSBarry Smith PetscFunctionReturn(0); 26820ac07820SSatish Balay } 268357b952d6SSatish Balay 2684e090d566SSatish Balay #include "petscsys.h" 268557b952d6SSatish Balay 26864a2ae208SSatish Balay #undef __FUNCT__ 26874a2ae208SSatish Balay #define __FUNCT__ "MatLoad_MPIBAIJ" 2688f69a0ea3SMatthew Knepley PetscErrorCode MatLoad_MPIBAIJ(PetscViewer viewer, MatType type,Mat *newmat) 268957b952d6SSatish Balay { 269057b952d6SSatish Balay Mat A; 26916849ba73SBarry Smith PetscErrorCode ierr; 2692b24ad042SBarry Smith int fd; 2693b24ad042SBarry Smith PetscInt i,nz,j,rstart,rend; 269487828ca2SBarry Smith PetscScalar *vals,*buf; 269557b952d6SSatish Balay MPI_Comm comm = ((PetscObject)viewer)->comm; 269657b952d6SSatish Balay MPI_Status status; 2697b24ad042SBarry Smith PetscMPIInt rank,size,maxnz; 2698b24ad042SBarry Smith PetscInt header[4],*rowlengths = 0,M,N,m,*rowners,*cols; 2699910ba992SMatthew Knepley PetscInt *locrowlens = PETSC_NULL,*procsnz = PETSC_NULL,*browners = PETSC_NULL; 2700167e7480SBarry Smith PetscInt jj,*mycols,*ibuf,bs=1,Mbs,mbs,extra_rows,mmax; 2701dc231df0SBarry Smith PetscMPIInt tag = ((PetscObject)viewer)->tag; 2702910ba992SMatthew Knepley PetscInt *dlens = PETSC_NULL,*odlens = PETSC_NULL,*mask = PETSC_NULL,*masked1 = PETSC_NULL,*masked2 = PETSC_NULL,rowcount,odcount; 2703dc231df0SBarry Smith PetscInt dcount,kmax,k,nzcount,tmp,mend; 270457b952d6SSatish Balay 2705d64ed03dSBarry Smith PetscFunctionBegin; 2706*8c07d4e3SBarry Smith ierr = PetscOptionsBegin(comm,PETSC_NULL,"Options for loading MPIBAIJ matrix","Mat");CHKERRQ(ierr); 2707*8c07d4e3SBarry Smith ierr = PetscOptionsInt("-matload_block_size","Set the blocksize used to store the matrix","MatLoad",bs,&bs,PETSC_NULL);CHKERRQ(ierr); 2708*8c07d4e3SBarry Smith ierr = PetscOptionsEnd();CHKERRQ(ierr); 270957b952d6SSatish Balay 2710d132466eSBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 2711d132466eSBarry Smith ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 271257b952d6SSatish Balay if (!rank) { 2713b0a32e0cSBarry Smith ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr); 2714e5638eb3SBarry Smith ierr = PetscBinaryRead(fd,(char *)header,4,PETSC_INT);CHKERRQ(ierr); 2715552e946dSBarry Smith if (header[0] != MAT_FILE_COOKIE) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"not matrix object"); 27166c5fab8fSBarry Smith } 2717d64ed03dSBarry Smith 2718b24ad042SBarry Smith ierr = MPI_Bcast(header+1,3,MPIU_INT,0,comm);CHKERRQ(ierr); 271957b952d6SSatish Balay M = header[1]; N = header[2]; 272057b952d6SSatish Balay 272129bbc08cSBarry Smith if (M != N) SETERRQ(PETSC_ERR_SUP,"Can only do square matrices"); 272257b952d6SSatish Balay 272357b952d6SSatish Balay /* 272457b952d6SSatish Balay This code adds extra rows to make sure the number of rows is 272557b952d6SSatish Balay divisible by the blocksize 272657b952d6SSatish Balay */ 272757b952d6SSatish Balay Mbs = M/bs; 2728dc231df0SBarry Smith extra_rows = bs - M + bs*Mbs; 272957b952d6SSatish Balay if (extra_rows == bs) extra_rows = 0; 273057b952d6SSatish Balay else Mbs++; 273157b952d6SSatish Balay if (extra_rows && !rank) { 2732ae15b995SBarry Smith ierr = PetscInfo(0,"Padding loaded matrix to match blocksize\n");CHKERRQ(ierr); 273357b952d6SSatish Balay } 2734537820f0SBarry Smith 273557b952d6SSatish Balay /* determine ownership of all rows */ 273657b952d6SSatish Balay mbs = Mbs/size + ((Mbs % size) > rank); 273757b952d6SSatish Balay m = mbs*bs; 2738dc231df0SBarry Smith ierr = PetscMalloc2(size+1,PetscInt,&rowners,size+1,PetscInt,&browners);CHKERRQ(ierr); 2739b24ad042SBarry Smith ierr = MPI_Allgather(&mbs,1,MPIU_INT,rowners+1,1,MPIU_INT,comm);CHKERRQ(ierr); 2740167e7480SBarry Smith 2741167e7480SBarry Smith /* process 0 needs enough room for process with most rows */ 2742167e7480SBarry Smith if (!rank) { 2743167e7480SBarry Smith mmax = rowners[1]; 2744167e7480SBarry Smith for (i=2; i<size; i++) { 2745167e7480SBarry Smith mmax = PetscMax(mmax,rowners[i]); 2746167e7480SBarry Smith } 2747ca02efcfSSatish Balay mmax*=bs; 2748167e7480SBarry Smith } else mmax = m; 2749167e7480SBarry Smith 275057b952d6SSatish Balay rowners[0] = 0; 2751cee3aa6bSSatish Balay for (i=2; i<=size; i++) rowners[i] += rowners[i-1]; 2752cee3aa6bSSatish Balay for (i=0; i<=size; i++) browners[i] = rowners[i]*bs; 275357b952d6SSatish Balay rstart = rowners[rank]; 275457b952d6SSatish Balay rend = rowners[rank+1]; 275557b952d6SSatish Balay 275657b952d6SSatish Balay /* distribute row lengths to all processors */ 275719c38ff2SBarry Smith ierr = PetscMalloc((mmax+1)*sizeof(PetscInt),&locrowlens);CHKERRQ(ierr); 275857b952d6SSatish Balay if (!rank) { 2759dc231df0SBarry Smith mend = m; 2760dc231df0SBarry Smith if (size == 1) mend = mend - extra_rows; 2761dc231df0SBarry Smith ierr = PetscBinaryRead(fd,locrowlens,mend,PETSC_INT);CHKERRQ(ierr); 2762dc231df0SBarry Smith for (j=mend; j<m; j++) locrowlens[j] = 1; 2763dc231df0SBarry Smith ierr = PetscMalloc(m*sizeof(PetscInt),&rowlengths);CHKERRQ(ierr); 2764b24ad042SBarry Smith ierr = PetscMalloc(size*sizeof(PetscInt),&procsnz);CHKERRQ(ierr); 2765b24ad042SBarry Smith ierr = PetscMemzero(procsnz,size*sizeof(PetscInt));CHKERRQ(ierr); 2766dc231df0SBarry Smith for (j=0; j<m; j++) { 2767dc231df0SBarry Smith procsnz[0] += locrowlens[j]; 2768dc231df0SBarry Smith } 2769dc231df0SBarry Smith for (i=1; i<size; i++) { 2770dc231df0SBarry Smith mend = browners[i+1] - browners[i]; 2771dc231df0SBarry Smith if (i == size-1) mend = mend - extra_rows; 2772dc231df0SBarry Smith ierr = PetscBinaryRead(fd,rowlengths,mend,PETSC_INT);CHKERRQ(ierr); 2773dc231df0SBarry Smith for (j=mend; j<browners[i+1] - browners[i]; j++) rowlengths[j] = 1; 2774dc231df0SBarry Smith /* calculate the number of nonzeros on each processor */ 2775dc231df0SBarry Smith for (j=0; j<browners[i+1]-browners[i]; j++) { 277657b952d6SSatish Balay procsnz[i] += rowlengths[j]; 277757b952d6SSatish Balay } 2778dc231df0SBarry Smith ierr = MPI_Send(rowlengths,browners[i+1]-browners[i],MPIU_INT,i,tag,comm);CHKERRQ(ierr); 277957b952d6SSatish Balay } 2780606d414cSSatish Balay ierr = PetscFree(rowlengths);CHKERRQ(ierr); 2781dc231df0SBarry Smith } else { 2782dc231df0SBarry Smith ierr = MPI_Recv(locrowlens,m,MPIU_INT,0,tag,comm,&status);CHKERRQ(ierr); 2783dc231df0SBarry Smith } 278457b952d6SSatish Balay 2785dc231df0SBarry Smith if (!rank) { 278657b952d6SSatish Balay /* determine max buffer needed and allocate it */ 27878a8e0b3aSBarry Smith maxnz = procsnz[0]; 2788cdc0ba36SBarry Smith for (i=1; i<size; i++) { 278957b952d6SSatish Balay maxnz = PetscMax(maxnz,procsnz[i]); 279057b952d6SSatish Balay } 2791b24ad042SBarry Smith ierr = PetscMalloc(maxnz*sizeof(PetscInt),&cols);CHKERRQ(ierr); 279257b952d6SSatish Balay 279357b952d6SSatish Balay /* read in my part of the matrix column indices */ 279457b952d6SSatish Balay nz = procsnz[0]; 279519c38ff2SBarry Smith ierr = PetscMalloc((nz+1)*sizeof(PetscInt),&ibuf);CHKERRQ(ierr); 279657b952d6SSatish Balay mycols = ibuf; 2797cee3aa6bSSatish Balay if (size == 1) nz -= extra_rows; 2798e5638eb3SBarry Smith ierr = PetscBinaryRead(fd,mycols,nz,PETSC_INT);CHKERRQ(ierr); 2799cee3aa6bSSatish Balay if (size == 1) for (i=0; i< extra_rows; i++) { mycols[nz+i] = M+i; } 2800cee3aa6bSSatish Balay 280157b952d6SSatish Balay /* read in every ones (except the last) and ship off */ 280257b952d6SSatish Balay for (i=1; i<size-1; i++) { 280357b952d6SSatish Balay nz = procsnz[i]; 2804e5638eb3SBarry Smith ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr); 2805b24ad042SBarry Smith ierr = MPI_Send(cols,nz,MPIU_INT,i,tag,comm);CHKERRQ(ierr); 280657b952d6SSatish Balay } 280757b952d6SSatish Balay /* read in the stuff for the last proc */ 280857b952d6SSatish Balay if (size != 1) { 280957b952d6SSatish Balay nz = procsnz[size-1] - extra_rows; /* the extra rows are not on the disk */ 2810e5638eb3SBarry Smith ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr); 281157b952d6SSatish Balay for (i=0; i<extra_rows; i++) cols[nz+i] = M+i; 2812b24ad042SBarry Smith ierr = MPI_Send(cols,nz+extra_rows,MPIU_INT,size-1,tag,comm);CHKERRQ(ierr); 281357b952d6SSatish Balay } 2814606d414cSSatish Balay ierr = PetscFree(cols);CHKERRQ(ierr); 2815d64ed03dSBarry Smith } else { 281657b952d6SSatish Balay /* determine buffer space needed for message */ 281757b952d6SSatish Balay nz = 0; 281857b952d6SSatish Balay for (i=0; i<m; i++) { 281957b952d6SSatish Balay nz += locrowlens[i]; 282057b952d6SSatish Balay } 282119c38ff2SBarry Smith ierr = PetscMalloc((nz+1)*sizeof(PetscInt),&ibuf);CHKERRQ(ierr); 282257b952d6SSatish Balay mycols = ibuf; 282357b952d6SSatish Balay /* receive message of column indices*/ 2824b24ad042SBarry Smith ierr = MPI_Recv(mycols,nz,MPIU_INT,0,tag,comm,&status);CHKERRQ(ierr); 2825b24ad042SBarry Smith ierr = MPI_Get_count(&status,MPIU_INT,&maxnz);CHKERRQ(ierr); 282629bbc08cSBarry Smith if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 282757b952d6SSatish Balay } 282857b952d6SSatish Balay 282957b952d6SSatish Balay /* loop over local rows, determining number of off diagonal entries */ 2830dc231df0SBarry Smith ierr = PetscMalloc2(rend-rstart,PetscInt,&dlens,rend-rstart,PetscInt,&odlens);CHKERRQ(ierr); 2831dc231df0SBarry Smith ierr = PetscMalloc3(Mbs,PetscInt,&mask,Mbs,PetscInt,&masked1,Mbs,PetscInt,&masked2);CHKERRQ(ierr); 2832dc231df0SBarry Smith ierr = PetscMemzero(mask,Mbs*sizeof(PetscInt));CHKERRQ(ierr); 2833dc231df0SBarry Smith ierr = PetscMemzero(masked1,Mbs*sizeof(PetscInt));CHKERRQ(ierr); 2834dc231df0SBarry Smith ierr = PetscMemzero(masked2,Mbs*sizeof(PetscInt));CHKERRQ(ierr); 283557b952d6SSatish Balay rowcount = 0; nzcount = 0; 283657b952d6SSatish Balay for (i=0; i<mbs; i++) { 283757b952d6SSatish Balay dcount = 0; 283857b952d6SSatish Balay odcount = 0; 283957b952d6SSatish Balay for (j=0; j<bs; j++) { 284057b952d6SSatish Balay kmax = locrowlens[rowcount]; 284157b952d6SSatish Balay for (k=0; k<kmax; k++) { 284257b952d6SSatish Balay tmp = mycols[nzcount++]/bs; 284357b952d6SSatish Balay if (!mask[tmp]) { 284457b952d6SSatish Balay mask[tmp] = 1; 284557b952d6SSatish Balay if (tmp < rstart || tmp >= rend) masked2[odcount++] = tmp; 284657b952d6SSatish Balay else masked1[dcount++] = tmp; 284757b952d6SSatish Balay } 284857b952d6SSatish Balay } 284957b952d6SSatish Balay rowcount++; 285057b952d6SSatish Balay } 2851cee3aa6bSSatish Balay 285257b952d6SSatish Balay dlens[i] = dcount; 285357b952d6SSatish Balay odlens[i] = odcount; 2854cee3aa6bSSatish Balay 285557b952d6SSatish Balay /* zero out the mask elements we set */ 285657b952d6SSatish Balay for (j=0; j<dcount; j++) mask[masked1[j]] = 0; 285757b952d6SSatish Balay for (j=0; j<odcount; j++) mask[masked2[j]] = 0; 285857b952d6SSatish Balay } 2859cee3aa6bSSatish Balay 286057b952d6SSatish Balay /* create our matrix */ 2861f69a0ea3SMatthew Knepley ierr = MatCreate(comm,&A);CHKERRQ(ierr); 2862f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,m,m,M+extra_rows,N+extra_rows);CHKERRQ(ierr); 286378ae41b4SKris Buschelman ierr = MatSetType(A,type);CHKERRQ(ierr) 286478ae41b4SKris Buschelman ierr = MatMPIBAIJSetPreallocation(A,bs,0,dlens,0,odlens);CHKERRQ(ierr); 286578ae41b4SKris Buschelman 286678ae41b4SKris Buschelman /* Why doesn't this called using ierr = MatSetOption(A,MAT_COLUMNS_SORTED);CHKERRQ(ierr); */ 2867dc231df0SBarry Smith ierr = MatSetOption(A,MAT_COLUMNS_SORTED);CHKERRQ(ierr); 286857b952d6SSatish Balay 286957b952d6SSatish Balay if (!rank) { 287019c38ff2SBarry Smith ierr = PetscMalloc((maxnz+1)*sizeof(PetscScalar),&buf);CHKERRQ(ierr); 287157b952d6SSatish Balay /* read in my part of the matrix numerical values */ 287257b952d6SSatish Balay nz = procsnz[0]; 287357b952d6SSatish Balay vals = buf; 2874cee3aa6bSSatish Balay mycols = ibuf; 2875cee3aa6bSSatish Balay if (size == 1) nz -= extra_rows; 2876e5638eb3SBarry Smith ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 2877cee3aa6bSSatish Balay if (size == 1) for (i=0; i< extra_rows; i++) { vals[nz+i] = 1.0; } 2878537820f0SBarry Smith 287957b952d6SSatish Balay /* insert into matrix */ 288057b952d6SSatish Balay jj = rstart*bs; 288157b952d6SSatish Balay for (i=0; i<m; i++) { 2882dc231df0SBarry Smith ierr = MatSetValues_MPIBAIJ(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr); 288357b952d6SSatish Balay mycols += locrowlens[i]; 288457b952d6SSatish Balay vals += locrowlens[i]; 288557b952d6SSatish Balay jj++; 288657b952d6SSatish Balay } 288757b952d6SSatish Balay /* read in other processors (except the last one) and ship out */ 288857b952d6SSatish Balay for (i=1; i<size-1; i++) { 288957b952d6SSatish Balay nz = procsnz[i]; 289057b952d6SSatish Balay vals = buf; 2891e5638eb3SBarry Smith ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 2892ca161407SBarry Smith ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,A->tag,comm);CHKERRQ(ierr); 289357b952d6SSatish Balay } 289457b952d6SSatish Balay /* the last proc */ 289557b952d6SSatish Balay if (size != 1){ 289657b952d6SSatish Balay nz = procsnz[i] - extra_rows; 2897cee3aa6bSSatish Balay vals = buf; 2898e5638eb3SBarry Smith ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 289957b952d6SSatish Balay for (i=0; i<extra_rows; i++) vals[nz+i] = 1.0; 2900ca161407SBarry Smith ierr = MPI_Send(vals,nz+extra_rows,MPIU_SCALAR,size-1,A->tag,comm);CHKERRQ(ierr); 290157b952d6SSatish Balay } 2902606d414cSSatish Balay ierr = PetscFree(procsnz);CHKERRQ(ierr); 2903d64ed03dSBarry Smith } else { 290457b952d6SSatish Balay /* receive numeric values */ 290519c38ff2SBarry Smith ierr = PetscMalloc((nz+1)*sizeof(PetscScalar),&buf);CHKERRQ(ierr); 290657b952d6SSatish Balay 290757b952d6SSatish Balay /* receive message of values*/ 290857b952d6SSatish Balay vals = buf; 2909cee3aa6bSSatish Balay mycols = ibuf; 2910ca161407SBarry Smith ierr = MPI_Recv(vals,nz,MPIU_SCALAR,0,A->tag,comm,&status);CHKERRQ(ierr); 2911ca161407SBarry Smith ierr = MPI_Get_count(&status,MPIU_SCALAR,&maxnz);CHKERRQ(ierr); 291229bbc08cSBarry Smith if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 291357b952d6SSatish Balay 291457b952d6SSatish Balay /* insert into matrix */ 291557b952d6SSatish Balay jj = rstart*bs; 2916cee3aa6bSSatish Balay for (i=0; i<m; i++) { 2917dc231df0SBarry Smith ierr = MatSetValues_MPIBAIJ(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr); 291857b952d6SSatish Balay mycols += locrowlens[i]; 291957b952d6SSatish Balay vals += locrowlens[i]; 292057b952d6SSatish Balay jj++; 292157b952d6SSatish Balay } 292257b952d6SSatish Balay } 2923606d414cSSatish Balay ierr = PetscFree(locrowlens);CHKERRQ(ierr); 2924606d414cSSatish Balay ierr = PetscFree(buf);CHKERRQ(ierr); 2925606d414cSSatish Balay ierr = PetscFree(ibuf);CHKERRQ(ierr); 2926dc231df0SBarry Smith ierr = PetscFree2(rowners,browners);CHKERRQ(ierr); 2927dc231df0SBarry Smith ierr = PetscFree2(dlens,odlens);CHKERRQ(ierr); 2928dc231df0SBarry Smith ierr = PetscFree3(mask,masked1,masked2);CHKERRQ(ierr); 29296d4a8577SBarry Smith ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 29306d4a8577SBarry Smith ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 293178ae41b4SKris Buschelman 293278ae41b4SKris Buschelman *newmat = A; 29333a40ed3dSBarry Smith PetscFunctionReturn(0); 293457b952d6SSatish Balay } 293557b952d6SSatish Balay 29364a2ae208SSatish Balay #undef __FUNCT__ 29374a2ae208SSatish Balay #define __FUNCT__ "MatMPIBAIJSetHashTableFactor" 2938133cdb44SSatish Balay /*@ 2939133cdb44SSatish Balay MatMPIBAIJSetHashTableFactor - Sets the factor required to compute the size of the HashTable. 2940133cdb44SSatish Balay 2941133cdb44SSatish Balay Input Parameters: 2942133cdb44SSatish Balay . mat - the matrix 2943133cdb44SSatish Balay . fact - factor 2944133cdb44SSatish Balay 2945fee21e36SBarry Smith Collective on Mat 2946fee21e36SBarry Smith 29478c890885SBarry Smith Level: advanced 29488c890885SBarry Smith 2949133cdb44SSatish Balay Notes: 2950*8c07d4e3SBarry Smith This can also be set by the command line option: -mat_use_hash_table <fact> 2951133cdb44SSatish Balay 2952133cdb44SSatish Balay .keywords: matrix, hashtable, factor, HT 2953133cdb44SSatish Balay 2954133cdb44SSatish Balay .seealso: MatSetOption() 2955133cdb44SSatish Balay @*/ 2956be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPIBAIJSetHashTableFactor(Mat mat,PetscReal fact) 2957133cdb44SSatish Balay { 2958dfbe8321SBarry Smith PetscErrorCode ierr,(*f)(Mat,PetscReal); 29595bf65638SKris Buschelman 29605bf65638SKris Buschelman PetscFunctionBegin; 29615bf65638SKris Buschelman ierr = PetscObjectQueryFunction((PetscObject)mat,"MatSetHashTableFactor_C",(void (**)(void))&f);CHKERRQ(ierr); 29625bf65638SKris Buschelman if (f) { 29635bf65638SKris Buschelman ierr = (*f)(mat,fact);CHKERRQ(ierr); 29645bf65638SKris Buschelman } 29655bf65638SKris Buschelman PetscFunctionReturn(0); 29665bf65638SKris Buschelman } 29675bf65638SKris Buschelman 2968be1d678aSKris Buschelman EXTERN_C_BEGIN 29695bf65638SKris Buschelman #undef __FUNCT__ 29705bf65638SKris Buschelman #define __FUNCT__ "MatSetHashTableFactor_MPIBAIJ" 2971be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatSetHashTableFactor_MPIBAIJ(Mat mat,PetscReal fact) 29725bf65638SKris Buschelman { 297325fdafccSSatish Balay Mat_MPIBAIJ *baij; 2974133cdb44SSatish Balay 2975133cdb44SSatish Balay PetscFunctionBegin; 2976133cdb44SSatish Balay baij = (Mat_MPIBAIJ*)mat->data; 2977133cdb44SSatish Balay baij->ht_fact = fact; 2978133cdb44SSatish Balay PetscFunctionReturn(0); 2979133cdb44SSatish Balay } 2980be1d678aSKris Buschelman EXTERN_C_END 2981f2a5309cSSatish Balay 29824a2ae208SSatish Balay #undef __FUNCT__ 29834a2ae208SSatish Balay #define __FUNCT__ "MatMPIBAIJGetSeqBAIJ" 2984be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPIBAIJGetSeqBAIJ(Mat A,Mat *Ad,Mat *Ao,PetscInt *colmap[]) 2985f2a5309cSSatish Balay { 2986f2a5309cSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 2987f2a5309cSSatish Balay PetscFunctionBegin; 2988f2a5309cSSatish Balay *Ad = a->A; 2989f2a5309cSSatish Balay *Ao = a->B; 2990195d93cdSBarry Smith *colmap = a->garray; 2991f2a5309cSSatish Balay PetscFunctionReturn(0); 2992f2a5309cSSatish Balay } 2993