1c6db04a5SJed Brown #include <../src/mat/impls/baij/mpi/mpibaij.h> /*I "petscmat.h" I*/ 2c5d9258eSSatish Balay 3b51a4376SLisandro Dalcin #include <petsc/private/hashseti.h> 4c6db04a5SJed Brown #include <petscblaslapack.h> 565a92638SMatthew G. Knepley #include <petscsf.h> 679bdfe76SSatish Balay 766976f2fSJacob Faibussowitsch static PetscErrorCode MatDestroy_MPIBAIJ(Mat mat) 826cec326SBarry Smith { 926cec326SBarry Smith Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 1026cec326SBarry Smith 1126cec326SBarry Smith PetscFunctionBegin; 1226cec326SBarry Smith PetscCall(PetscLogObjectState((PetscObject)mat, "Rows=%" PetscInt_FMT ",Cols=%" PetscInt_FMT, mat->rmap->N, mat->cmap->N)); 1326cec326SBarry Smith PetscCall(MatStashDestroy_Private(&mat->stash)); 1426cec326SBarry Smith PetscCall(MatStashDestroy_Private(&mat->bstash)); 1526cec326SBarry Smith PetscCall(MatDestroy(&baij->A)); 1626cec326SBarry Smith PetscCall(MatDestroy(&baij->B)); 1726cec326SBarry Smith #if defined(PETSC_USE_CTABLE) 1826cec326SBarry Smith PetscCall(PetscHMapIDestroy(&baij->colmap)); 1926cec326SBarry Smith #else 2026cec326SBarry Smith PetscCall(PetscFree(baij->colmap)); 2126cec326SBarry Smith #endif 2226cec326SBarry Smith PetscCall(PetscFree(baij->garray)); 2326cec326SBarry Smith PetscCall(VecDestroy(&baij->lvec)); 2426cec326SBarry Smith PetscCall(VecScatterDestroy(&baij->Mvctx)); 2526cec326SBarry Smith PetscCall(PetscFree2(baij->rowvalues, baij->rowindices)); 2626cec326SBarry Smith PetscCall(PetscFree(baij->barray)); 2726cec326SBarry Smith PetscCall(PetscFree2(baij->hd, baij->ht)); 2826cec326SBarry Smith PetscCall(PetscFree(baij->rangebs)); 2926cec326SBarry Smith PetscCall(PetscFree(mat->data)); 3026cec326SBarry Smith 3126cec326SBarry Smith PetscCall(PetscObjectChangeTypeName((PetscObject)mat, NULL)); 3226cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatStoreValues_C", NULL)); 3326cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatRetrieveValues_C", NULL)); 3426cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMPIBAIJSetPreallocation_C", NULL)); 3526cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMPIBAIJSetPreallocationCSR_C", NULL)); 3626cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDiagonalScaleLocal_C", NULL)); 3726cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatSetHashTableFactor_C", NULL)); 3826cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpibaij_mpisbaij_C", NULL)); 3926cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpibaij_mpiadj_C", NULL)); 4026cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpibaij_mpiaij_C", NULL)); 4126cec326SBarry Smith #if defined(PETSC_HAVE_HYPRE) 4226cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpibaij_hypre_C", NULL)); 4326cec326SBarry Smith #endif 4426cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpibaij_is_C", NULL)); 4526cec326SBarry Smith PetscFunctionReturn(PETSC_SUCCESS); 4626cec326SBarry Smith } 4726cec326SBarry Smith 4826cec326SBarry Smith /* defines MatSetValues_MPI_Hash(), MatAssemblyBegin_MPI_Hash(), and MatAssemblyEnd_MPI_Hash() */ 4926cec326SBarry Smith #define TYPE BAIJ 5026cec326SBarry Smith #include "../src/mat/impls/aij/mpi/mpihashmat.h" 5126cec326SBarry Smith #undef TYPE 5226cec326SBarry Smith 537ea3e4caSstefano_zampini #if defined(PETSC_HAVE_HYPRE) 547ea3e4caSstefano_zampini PETSC_INTERN PetscErrorCode MatConvert_AIJ_HYPRE(Mat, MatType, MatReuse, Mat *); 557ea3e4caSstefano_zampini #endif 567ea3e4caSstefano_zampini 5766976f2fSJacob Faibussowitsch static PetscErrorCode MatGetRowMaxAbs_MPIBAIJ(Mat A, Vec v, PetscInt idx[]) 58d71ae5a4SJacob Faibussowitsch { 597843d17aSBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 604e879edeSHong Zhang PetscInt i, *idxb = NULL, m = A->rmap->n, bs = A->cmap->bs; 614e879edeSHong Zhang PetscScalar *va, *vv; 624e879edeSHong Zhang Vec vB, vA; 634e879edeSHong Zhang const PetscScalar *vb; 647843d17aSBarry Smith 657843d17aSBarry Smith PetscFunctionBegin; 669566063dSJacob Faibussowitsch PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &vA)); 679566063dSJacob Faibussowitsch PetscCall(MatGetRowMaxAbs(a->A, vA, idx)); 684e879edeSHong Zhang 699566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(vA, &va)); 70985db425SBarry Smith if (idx) { 714e879edeSHong Zhang for (i = 0; i < m; i++) { 7226fbe8dcSKarl Rupp if (PetscAbsScalar(va[i])) idx[i] += A->cmap->rstart; 7326fbe8dcSKarl Rupp } 74985db425SBarry Smith } 757843d17aSBarry Smith 769566063dSJacob Faibussowitsch PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &vB)); 779566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m, &idxb)); 789566063dSJacob Faibussowitsch PetscCall(MatGetRowMaxAbs(a->B, vB, idxb)); 797843d17aSBarry Smith 809566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(v, &vv)); 819566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(vB, &vb)); 824e879edeSHong Zhang for (i = 0; i < m; i++) { 8326fbe8dcSKarl Rupp if (PetscAbsScalar(va[i]) < PetscAbsScalar(vb[i])) { 844e879edeSHong Zhang vv[i] = vb[i]; 854e879edeSHong Zhang if (idx) idx[i] = bs * a->garray[idxb[i] / bs] + (idxb[i] % bs); 864e879edeSHong Zhang } else { 874e879edeSHong Zhang vv[i] = va[i]; 889371c9d4SSatish Balay if (idx && PetscAbsScalar(va[i]) == PetscAbsScalar(vb[i]) && idxb[i] != -1 && idx[i] > bs * a->garray[idxb[i] / bs] + (idxb[i] % bs)) idx[i] = bs * a->garray[idxb[i] / bs] + (idxb[i] % bs); 8926fbe8dcSKarl Rupp } 907843d17aSBarry Smith } 919566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(vA, &vv)); 929566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(vA, &va)); 939566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(vB, &vb)); 949566063dSJacob Faibussowitsch PetscCall(PetscFree(idxb)); 959566063dSJacob Faibussowitsch PetscCall(VecDestroy(&vA)); 969566063dSJacob Faibussowitsch PetscCall(VecDestroy(&vB)); 973ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 987843d17aSBarry Smith } 997843d17aSBarry Smith 10066976f2fSJacob Faibussowitsch static PetscErrorCode MatStoreValues_MPIBAIJ(Mat mat) 101d71ae5a4SJacob Faibussowitsch { 1027fc3c18eSBarry Smith Mat_MPIBAIJ *aij = (Mat_MPIBAIJ *)mat->data; 1037fc3c18eSBarry Smith 1047fc3c18eSBarry Smith PetscFunctionBegin; 1059566063dSJacob Faibussowitsch PetscCall(MatStoreValues(aij->A)); 1069566063dSJacob Faibussowitsch PetscCall(MatStoreValues(aij->B)); 1073ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1087fc3c18eSBarry Smith } 1097fc3c18eSBarry Smith 11066976f2fSJacob Faibussowitsch static PetscErrorCode MatRetrieveValues_MPIBAIJ(Mat mat) 111d71ae5a4SJacob Faibussowitsch { 1127fc3c18eSBarry Smith Mat_MPIBAIJ *aij = (Mat_MPIBAIJ *)mat->data; 1137fc3c18eSBarry Smith 1147fc3c18eSBarry Smith PetscFunctionBegin; 1159566063dSJacob Faibussowitsch PetscCall(MatRetrieveValues(aij->A)); 1169566063dSJacob Faibussowitsch PetscCall(MatRetrieveValues(aij->B)); 1173ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1187fc3c18eSBarry Smith } 1197fc3c18eSBarry Smith 120537820f0SBarry Smith /* 121537820f0SBarry Smith Local utility routine that creates a mapping from the global column 12257b952d6SSatish Balay number to the local number in the off-diagonal part of the local 123e06f6af7SJed Brown storage of the matrix. This is done in a non scalable way since the 12457b952d6SSatish Balay length of colmap equals the global matrix length. 12557b952d6SSatish Balay */ 126d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateColmap_MPIBAIJ_Private(Mat mat) 127d71ae5a4SJacob Faibussowitsch { 12857b952d6SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 12957b952d6SSatish Balay Mat_SeqBAIJ *B = (Mat_SeqBAIJ *)baij->B->data; 130d0f46423SBarry Smith PetscInt nbs = B->nbs, i, bs = mat->rmap->bs; 13157b952d6SSatish Balay 132d64ed03dSBarry Smith PetscFunctionBegin; 133aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 134eec179cfSJacob Faibussowitsch PetscCall(PetscHMapICreateWithSize(baij->nbs, &baij->colmap)); 135c76ffc5fSJacob Faibussowitsch for (i = 0; i < nbs; i++) PetscCall(PetscHMapISet(baij->colmap, baij->garray[i] + 1, i * bs + 1)); 13648e59246SSatish Balay #else 1379566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(baij->Nbs + 1, &baij->colmap)); 138928fc39bSSatish Balay for (i = 0; i < nbs; i++) baij->colmap[baij->garray[i]] = i * bs + 1; 13948e59246SSatish Balay #endif 1403ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 14157b952d6SSatish Balay } 14257b952d6SSatish Balay 143d40312a9SBarry Smith #define MatSetValues_SeqBAIJ_A_Private(row, col, value, addv, orow, ocol) \ 144a8f51744SPierre Jolivet do { \ 14580c1aa95SSatish Balay brow = row / bs; \ 146*8e3a54c0SPierre Jolivet rp = PetscSafePointerPlusOffset(aj, ai[brow]); \ 147*8e3a54c0SPierre Jolivet ap = PetscSafePointerPlusOffset(aa, bs2 * ai[brow]); \ 1489371c9d4SSatish Balay rmax = aimax[brow]; \ 1499371c9d4SSatish Balay nrow = ailen[brow]; \ 15080c1aa95SSatish Balay bcol = col / bs; \ 1519371c9d4SSatish Balay ridx = row % bs; \ 1529371c9d4SSatish Balay cidx = col % bs; \ 1539371c9d4SSatish Balay low = 0; \ 1549371c9d4SSatish Balay high = nrow; \ 155ab26458aSBarry Smith while (high - low > 3) { \ 156ab26458aSBarry Smith t = (low + high) / 2; \ 157ab26458aSBarry Smith if (rp[t] > bcol) high = t; \ 158ab26458aSBarry Smith else low = t; \ 159ab26458aSBarry Smith } \ 160ab26458aSBarry Smith for (_i = low; _i < high; _i++) { \ 16180c1aa95SSatish Balay if (rp[_i] > bcol) break; \ 16280c1aa95SSatish Balay if (rp[_i] == bcol) { \ 16380c1aa95SSatish Balay bap = ap + bs2 * _i + bs * cidx + ridx; \ 164eada6651SSatish Balay if (addv == ADD_VALUES) *bap += value; \ 165eada6651SSatish Balay else *bap = value; \ 166ac7a638eSSatish Balay goto a_noinsert; \ 16780c1aa95SSatish Balay } \ 16880c1aa95SSatish Balay } \ 16989280ab3SLois Curfman McInnes if (a->nonew == 1) goto a_noinsert; \ 1705f80ce2aSJacob Faibussowitsch PetscCheck(a->nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", orow, ocol); \ 171fef13f97SBarry Smith MatSeqXAIJReallocateAIJ(A, a->mbs, bs2, nrow, brow, bcol, rmax, aa, ai, aj, rp, ap, aimax, a->nonew, MatScalar); \ 17280c1aa95SSatish Balay N = nrow++ - 1; \ 17380c1aa95SSatish Balay /* shift up all the later entries in this row */ \ 1749566063dSJacob Faibussowitsch PetscCall(PetscArraymove(rp + _i + 1, rp + _i, N - _i + 1)); \ 1759566063dSJacob Faibussowitsch PetscCall(PetscArraymove(ap + bs2 * (_i + 1), ap + bs2 * _i, bs2 * (N - _i + 1))); \ 1769566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(ap + bs2 * _i, bs2)); \ 17780c1aa95SSatish Balay rp[_i] = bcol; \ 17880c1aa95SSatish Balay ap[bs2 * _i + bs * cidx + ridx] = value; \ 179ac7a638eSSatish Balay a_noinsert:; \ 18080c1aa95SSatish Balay ailen[brow] = nrow; \ 181a8f51744SPierre Jolivet } while (0) 18257b952d6SSatish Balay 183d40312a9SBarry Smith #define MatSetValues_SeqBAIJ_B_Private(row, col, value, addv, orow, ocol) \ 184a8f51744SPierre Jolivet do { \ 185ac7a638eSSatish Balay brow = row / bs; \ 186*8e3a54c0SPierre Jolivet rp = PetscSafePointerPlusOffset(bj, bi[brow]); \ 187*8e3a54c0SPierre Jolivet ap = PetscSafePointerPlusOffset(ba, bs2 * bi[brow]); \ 1889371c9d4SSatish Balay rmax = bimax[brow]; \ 1899371c9d4SSatish Balay nrow = bilen[brow]; \ 190ac7a638eSSatish Balay bcol = col / bs; \ 1919371c9d4SSatish Balay ridx = row % bs; \ 1929371c9d4SSatish Balay cidx = col % bs; \ 1939371c9d4SSatish Balay low = 0; \ 1949371c9d4SSatish Balay high = nrow; \ 195ac7a638eSSatish Balay while (high - low > 3) { \ 196ac7a638eSSatish Balay t = (low + high) / 2; \ 197ac7a638eSSatish Balay if (rp[t] > bcol) high = t; \ 198ac7a638eSSatish Balay else low = t; \ 199ac7a638eSSatish Balay } \ 200ac7a638eSSatish Balay for (_i = low; _i < high; _i++) { \ 201ac7a638eSSatish Balay if (rp[_i] > bcol) break; \ 202ac7a638eSSatish Balay if (rp[_i] == bcol) { \ 203ac7a638eSSatish Balay bap = ap + bs2 * _i + bs * cidx + ridx; \ 204ac7a638eSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 205ac7a638eSSatish Balay else *bap = value; \ 206ac7a638eSSatish Balay goto b_noinsert; \ 207ac7a638eSSatish Balay } \ 208ac7a638eSSatish Balay } \ 20989280ab3SLois Curfman McInnes if (b->nonew == 1) goto b_noinsert; \ 2105f80ce2aSJacob Faibussowitsch PetscCheck(b->nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", orow, ocol); \ 211fef13f97SBarry Smith MatSeqXAIJReallocateAIJ(B, b->mbs, bs2, nrow, brow, bcol, rmax, ba, bi, bj, rp, ap, bimax, b->nonew, MatScalar); \ 212ac7a638eSSatish Balay N = nrow++ - 1; \ 213ac7a638eSSatish Balay /* shift up all the later entries in this row */ \ 2149566063dSJacob Faibussowitsch PetscCall(PetscArraymove(rp + _i + 1, rp + _i, N - _i + 1)); \ 2159566063dSJacob Faibussowitsch PetscCall(PetscArraymove(ap + bs2 * (_i + 1), ap + bs2 * _i, bs2 * (N - _i + 1))); \ 2169566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(ap + bs2 * _i, bs2)); \ 217ac7a638eSSatish Balay rp[_i] = bcol; \ 218ac7a638eSSatish Balay ap[bs2 * _i + bs * cidx + ridx] = value; \ 219ac7a638eSSatish Balay b_noinsert:; \ 220ac7a638eSSatish Balay bilen[brow] = nrow; \ 221a8f51744SPierre Jolivet } while (0) 222ac7a638eSSatish Balay 223d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetValues_MPIBAIJ(Mat mat, PetscInt m, const PetscInt im[], PetscInt n, const PetscInt in[], const PetscScalar v[], InsertMode addv) 224d71ae5a4SJacob Faibussowitsch { 22557b952d6SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 22693fea6afSBarry Smith MatScalar value; 227ace3abfcSBarry Smith PetscBool roworiented = baij->roworiented; 228b24ad042SBarry Smith PetscInt i, j, row, col; 229d0f46423SBarry Smith PetscInt rstart_orig = mat->rmap->rstart; 230d0f46423SBarry Smith PetscInt rend_orig = mat->rmap->rend, cstart_orig = mat->cmap->rstart; 231d0f46423SBarry Smith PetscInt cend_orig = mat->cmap->rend, bs = mat->rmap->bs; 23257b952d6SSatish Balay 233eada6651SSatish Balay /* Some Variables required in the macro */ 23480c1aa95SSatish Balay Mat A = baij->A; 23580c1aa95SSatish Balay Mat_SeqBAIJ *a = (Mat_SeqBAIJ *)(A)->data; 236b24ad042SBarry Smith PetscInt *aimax = a->imax, *ai = a->i, *ailen = a->ilen, *aj = a->j; 2373eda8832SBarry Smith MatScalar *aa = a->a; 238ac7a638eSSatish Balay 239ac7a638eSSatish Balay Mat B = baij->B; 240ac7a638eSSatish Balay Mat_SeqBAIJ *b = (Mat_SeqBAIJ *)(B)->data; 241b24ad042SBarry Smith PetscInt *bimax = b->imax, *bi = b->i, *bilen = b->ilen, *bj = b->j; 2423eda8832SBarry Smith MatScalar *ba = b->a; 243ac7a638eSSatish Balay 244b24ad042SBarry Smith PetscInt *rp, ii, nrow, _i, rmax, N, brow, bcol; 245b24ad042SBarry Smith PetscInt low, high, t, ridx, cidx, bs2 = a->bs2; 2463eda8832SBarry Smith MatScalar *ap, *bap; 24780c1aa95SSatish Balay 248d64ed03dSBarry Smith PetscFunctionBegin; 24957b952d6SSatish Balay for (i = 0; i < m; i++) { 2505ef9f2a5SBarry Smith if (im[i] < 0) continue; 2515f80ce2aSJacob Faibussowitsch PetscCheck(im[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, im[i], mat->rmap->N - 1); 25257b952d6SSatish Balay if (im[i] >= rstart_orig && im[i] < rend_orig) { 25357b952d6SSatish Balay row = im[i] - rstart_orig; 25457b952d6SSatish Balay for (j = 0; j < n; j++) { 25557b952d6SSatish Balay if (in[j] >= cstart_orig && in[j] < cend_orig) { 25657b952d6SSatish Balay col = in[j] - cstart_orig; 257db4deed7SKarl Rupp if (roworiented) value = v[i * n + j]; 258db4deed7SKarl Rupp else value = v[i + j * m]; 259d40312a9SBarry Smith MatSetValues_SeqBAIJ_A_Private(row, col, value, addv, im[i], in[j]); 260f7d195e4SLawrence Mitchell } else if (in[j] < 0) { 261f7d195e4SLawrence Mitchell continue; 262f7d195e4SLawrence Mitchell } else { 263f7d195e4SLawrence Mitchell PetscCheck(in[j] < mat->cmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, in[j], mat->cmap->N - 1); 26457b952d6SSatish Balay if (mat->was_assembled) { 26548a46eb9SPierre Jolivet if (!baij->colmap) PetscCall(MatCreateColmap_MPIBAIJ_Private(mat)); 266aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 267eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIGetWithDefault(baij->colmap, in[j] / bs + 1, 0, &col)); 268bba1ac68SSatish Balay col = col - 1; 26948e59246SSatish Balay #else 270bba1ac68SSatish Balay col = baij->colmap[in[j] / bs] - 1; 27148e59246SSatish Balay #endif 272c9ef50b2SBarry Smith if (col < 0 && !((Mat_SeqBAIJ *)(baij->B->data))->nonew) { 2739566063dSJacob Faibussowitsch PetscCall(MatDisAssemble_MPIBAIJ(mat)); 2748295de27SSatish Balay col = in[j]; 2759bf004c3SSatish Balay /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */ 2769bf004c3SSatish Balay B = baij->B; 2779bf004c3SSatish Balay b = (Mat_SeqBAIJ *)(B)->data; 2789371c9d4SSatish Balay bimax = b->imax; 2799371c9d4SSatish Balay bi = b->i; 2809371c9d4SSatish Balay bilen = b->ilen; 2819371c9d4SSatish Balay bj = b->j; 2829bf004c3SSatish Balay ba = b->a; 283f7d195e4SLawrence Mitchell } else { 284f7d195e4SLawrence Mitchell PetscCheck(col >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", im[i], in[j]); 285f7d195e4SLawrence Mitchell col += in[j] % bs; 286f7d195e4SLawrence Mitchell } 2878295de27SSatish Balay } else col = in[j]; 288db4deed7SKarl Rupp if (roworiented) value = v[i * n + j]; 289db4deed7SKarl Rupp else value = v[i + j * m]; 290d40312a9SBarry Smith MatSetValues_SeqBAIJ_B_Private(row, col, value, addv, im[i], in[j]); 2919566063dSJacob Faibussowitsch /* PetscCall(MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv)); */ 29257b952d6SSatish Balay } 29357b952d6SSatish Balay } 294d64ed03dSBarry Smith } else { 2955f80ce2aSJacob Faibussowitsch PetscCheck(!mat->nooffprocentries, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Setting off process row %" PetscInt_FMT " even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set", im[i]); 29690f02eecSBarry Smith if (!baij->donotstash) { 2975080c13bSMatthew G Knepley mat->assembled = PETSC_FALSE; 298ff2fd236SBarry Smith if (roworiented) { 2999566063dSJacob Faibussowitsch PetscCall(MatStashValuesRow_Private(&mat->stash, im[i], n, in, v + i * n, PETSC_FALSE)); 300ff2fd236SBarry Smith } else { 3019566063dSJacob Faibussowitsch PetscCall(MatStashValuesCol_Private(&mat->stash, im[i], n, in, v + i, m, PETSC_FALSE)); 30257b952d6SSatish Balay } 30357b952d6SSatish Balay } 30457b952d6SSatish Balay } 30590f02eecSBarry Smith } 3063ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 30757b952d6SSatish Balay } 30857b952d6SSatish Balay 309d71ae5a4SJacob Faibussowitsch static inline PetscErrorCode MatSetValuesBlocked_SeqBAIJ_Inlined(Mat A, PetscInt row, PetscInt col, const PetscScalar v[], InsertMode is, PetscInt orow, PetscInt ocol) 310d71ae5a4SJacob Faibussowitsch { 311880c6e6aSBarry Smith Mat_SeqBAIJ *a = (Mat_SeqBAIJ *)A->data; 3128ab52850SBarry Smith PetscInt *rp, low, high, t, ii, jj, nrow, i, rmax, N; 313880c6e6aSBarry Smith PetscInt *imax = a->imax, *ai = a->i, *ailen = a->ilen; 3148ab52850SBarry Smith PetscInt *aj = a->j, nonew = a->nonew, bs2 = a->bs2, bs = A->rmap->bs; 315880c6e6aSBarry Smith PetscBool roworiented = a->roworiented; 316880c6e6aSBarry Smith const PetscScalar *value = v; 317880c6e6aSBarry Smith MatScalar *ap, *aa = a->a, *bap; 318880c6e6aSBarry Smith 319880c6e6aSBarry Smith PetscFunctionBegin; 320880c6e6aSBarry Smith rp = aj + ai[row]; 321880c6e6aSBarry Smith ap = aa + bs2 * ai[row]; 322880c6e6aSBarry Smith rmax = imax[row]; 323880c6e6aSBarry Smith nrow = ailen[row]; 3248ab52850SBarry Smith value = v; 3258ab52850SBarry Smith low = 0; 3268ab52850SBarry Smith high = nrow; 327880c6e6aSBarry Smith while (high - low > 7) { 328880c6e6aSBarry Smith t = (low + high) / 2; 329880c6e6aSBarry Smith if (rp[t] > col) high = t; 330880c6e6aSBarry Smith else low = t; 331880c6e6aSBarry Smith } 332880c6e6aSBarry Smith for (i = low; i < high; i++) { 333880c6e6aSBarry Smith if (rp[i] > col) break; 334880c6e6aSBarry Smith if (rp[i] == col) { 335880c6e6aSBarry Smith bap = ap + bs2 * i; 336880c6e6aSBarry Smith if (roworiented) { 337880c6e6aSBarry Smith if (is == ADD_VALUES) { 3388ab52850SBarry Smith for (ii = 0; ii < bs; ii++) { 339ad540459SPierre Jolivet for (jj = ii; jj < bs2; jj += bs) bap[jj] += *value++; 340880c6e6aSBarry Smith } 341880c6e6aSBarry Smith } else { 3428ab52850SBarry Smith for (ii = 0; ii < bs; ii++) { 343ad540459SPierre Jolivet for (jj = ii; jj < bs2; jj += bs) bap[jj] = *value++; 344880c6e6aSBarry Smith } 345880c6e6aSBarry Smith } 346880c6e6aSBarry Smith } else { 347880c6e6aSBarry Smith if (is == ADD_VALUES) { 3488ab52850SBarry Smith for (ii = 0; ii < bs; ii++, value += bs) { 349ad540459SPierre Jolivet for (jj = 0; jj < bs; jj++) bap[jj] += value[jj]; 350880c6e6aSBarry Smith bap += bs; 351880c6e6aSBarry Smith } 352880c6e6aSBarry Smith } else { 3538ab52850SBarry Smith for (ii = 0; ii < bs; ii++, value += bs) { 354ad540459SPierre Jolivet for (jj = 0; jj < bs; jj++) bap[jj] = value[jj]; 355880c6e6aSBarry Smith bap += bs; 356880c6e6aSBarry Smith } 357880c6e6aSBarry Smith } 358880c6e6aSBarry Smith } 359880c6e6aSBarry Smith goto noinsert2; 360880c6e6aSBarry Smith } 361880c6e6aSBarry Smith } 362880c6e6aSBarry Smith if (nonew == 1) goto noinsert2; 3635f80ce2aSJacob Faibussowitsch PetscCheck(nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new global block indexed nonzero block (%" PetscInt_FMT ", %" PetscInt_FMT ") in the matrix", orow, ocol); 364880c6e6aSBarry Smith MatSeqXAIJReallocateAIJ(A, a->mbs, bs2, nrow, row, col, rmax, aa, ai, aj, rp, ap, imax, nonew, MatScalar); 3659371c9d4SSatish Balay N = nrow++ - 1; 3669371c9d4SSatish Balay high++; 367880c6e6aSBarry Smith /* shift up all the later entries in this row */ 3689566063dSJacob Faibussowitsch PetscCall(PetscArraymove(rp + i + 1, rp + i, N - i + 1)); 3699566063dSJacob Faibussowitsch PetscCall(PetscArraymove(ap + bs2 * (i + 1), ap + bs2 * i, bs2 * (N - i + 1))); 370880c6e6aSBarry Smith rp[i] = col; 371880c6e6aSBarry Smith bap = ap + bs2 * i; 372880c6e6aSBarry Smith if (roworiented) { 3738ab52850SBarry Smith for (ii = 0; ii < bs; ii++) { 374ad540459SPierre Jolivet for (jj = ii; jj < bs2; jj += bs) bap[jj] = *value++; 375880c6e6aSBarry Smith } 376880c6e6aSBarry Smith } else { 3778ab52850SBarry Smith for (ii = 0; ii < bs; ii++) { 378ad540459SPierre Jolivet for (jj = 0; jj < bs; jj++) *bap++ = *value++; 379880c6e6aSBarry Smith } 380880c6e6aSBarry Smith } 381880c6e6aSBarry Smith noinsert2:; 382880c6e6aSBarry Smith ailen[row] = nrow; 3833ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 384880c6e6aSBarry Smith } 385880c6e6aSBarry Smith 3868ab52850SBarry Smith /* 3878ab52850SBarry Smith This routine should be optimized so that the block copy at ** Here a copy is required ** below is not needed 3888ab52850SBarry Smith by passing additional stride information into the MatSetValuesBlocked_SeqBAIJ_Inlined() routine 3898ab52850SBarry Smith */ 39066976f2fSJacob Faibussowitsch static PetscErrorCode MatSetValuesBlocked_MPIBAIJ(Mat mat, PetscInt m, const PetscInt im[], PetscInt n, const PetscInt in[], const PetscScalar v[], InsertMode addv) 391d71ae5a4SJacob Faibussowitsch { 392ab26458aSBarry Smith Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 393dd6ea824SBarry Smith const PetscScalar *value; 394f15d580aSBarry Smith MatScalar *barray = baij->barray; 395ace3abfcSBarry Smith PetscBool roworiented = baij->roworiented; 396899cda47SBarry Smith PetscInt i, j, ii, jj, row, col, rstart = baij->rstartbs; 397899cda47SBarry Smith PetscInt rend = baij->rendbs, cstart = baij->cstartbs, stepval; 398d0f46423SBarry Smith PetscInt cend = baij->cendbs, bs = mat->rmap->bs, bs2 = baij->bs2; 399ab26458aSBarry Smith 400b16ae2b1SBarry Smith PetscFunctionBegin; 40130793edcSSatish Balay if (!barray) { 4029566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(bs2, &barray)); 40382502324SSatish Balay baij->barray = barray; 40430793edcSSatish Balay } 40530793edcSSatish Balay 40626fbe8dcSKarl Rupp if (roworiented) stepval = (n - 1) * bs; 40726fbe8dcSKarl Rupp else stepval = (m - 1) * bs; 40826fbe8dcSKarl Rupp 409ab26458aSBarry Smith for (i = 0; i < m; i++) { 4105ef9f2a5SBarry Smith if (im[i] < 0) continue; 4116bdcaf15SBarry Smith PetscCheck(im[i] < baij->Mbs, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Block indexed row too large %" PetscInt_FMT " max %" PetscInt_FMT, im[i], baij->Mbs - 1); 412ab26458aSBarry Smith if (im[i] >= rstart && im[i] < rend) { 413ab26458aSBarry Smith row = im[i] - rstart; 414ab26458aSBarry Smith for (j = 0; j < n; j++) { 41515b57d14SSatish Balay /* If NumCol = 1 then a copy is not required */ 41615b57d14SSatish Balay if ((roworiented) && (n == 1)) { 417f15d580aSBarry Smith barray = (MatScalar *)v + i * bs2; 41815b57d14SSatish Balay } else if ((!roworiented) && (m == 1)) { 419f15d580aSBarry Smith barray = (MatScalar *)v + j * bs2; 42015b57d14SSatish Balay } else { /* Here a copy is required */ 421ab26458aSBarry Smith if (roworiented) { 42253ef36baSBarry Smith value = v + (i * (stepval + bs) + j) * bs; 423ab26458aSBarry Smith } else { 42453ef36baSBarry Smith value = v + (j * (stepval + bs) + i) * bs; 425abef11f7SSatish Balay } 42653ef36baSBarry Smith for (ii = 0; ii < bs; ii++, value += bs + stepval) { 42726fbe8dcSKarl Rupp for (jj = 0; jj < bs; jj++) barray[jj] = value[jj]; 42853ef36baSBarry Smith barray += bs; 42947513183SBarry Smith } 43030793edcSSatish Balay barray -= bs2; 43115b57d14SSatish Balay } 432abef11f7SSatish Balay 433abef11f7SSatish Balay if (in[j] >= cstart && in[j] < cend) { 434abef11f7SSatish Balay col = in[j] - cstart; 4359566063dSJacob Faibussowitsch PetscCall(MatSetValuesBlocked_SeqBAIJ_Inlined(baij->A, row, col, barray, addv, im[i], in[j])); 436f7d195e4SLawrence Mitchell } else if (in[j] < 0) { 437f7d195e4SLawrence Mitchell continue; 438f7d195e4SLawrence Mitchell } else { 439f7d195e4SLawrence Mitchell PetscCheck(in[j] < baij->Nbs, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Block indexed column too large %" PetscInt_FMT " max %" PetscInt_FMT, in[j], baij->Nbs - 1); 440ab26458aSBarry Smith if (mat->was_assembled) { 44148a46eb9SPierre Jolivet if (!baij->colmap) PetscCall(MatCreateColmap_MPIBAIJ_Private(mat)); 442a5eb4965SSatish Balay 4432515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 444aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 4459371c9d4SSatish Balay { 4469371c9d4SSatish Balay PetscInt data; 447eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIGetWithDefault(baij->colmap, in[j] + 1, 0, &data)); 44808401ef6SPierre Jolivet PetscCheck((data - 1) % bs == 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Incorrect colmap"); 449fa46199cSSatish Balay } 45048e59246SSatish Balay #else 45108401ef6SPierre Jolivet PetscCheck((baij->colmap[in[j]] - 1) % bs == 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Incorrect colmap"); 452a5eb4965SSatish Balay #endif 45348e59246SSatish Balay #endif 454aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 455eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIGetWithDefault(baij->colmap, in[j] + 1, 0, &col)); 456fa46199cSSatish Balay col = (col - 1) / bs; 45748e59246SSatish Balay #else 458a5eb4965SSatish Balay col = (baij->colmap[in[j]] - 1) / bs; 45948e59246SSatish Balay #endif 4600e9bae81SBarry Smith if (col < 0 && !((Mat_SeqBAIJ *)(baij->B->data))->nonew) { 4619566063dSJacob Faibussowitsch PetscCall(MatDisAssemble_MPIBAIJ(mat)); 462ab26458aSBarry Smith col = in[j]; 4635f80ce2aSJacob Faibussowitsch } else PetscCheck(col >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new blocked indexed nonzero block (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", im[i], in[j]); 464db4deed7SKarl Rupp } else col = in[j]; 4659566063dSJacob Faibussowitsch PetscCall(MatSetValuesBlocked_SeqBAIJ_Inlined(baij->B, row, col, barray, addv, im[i], in[j])); 466ab26458aSBarry Smith } 467ab26458aSBarry Smith } 468d64ed03dSBarry Smith } else { 4695f80ce2aSJacob Faibussowitsch PetscCheck(!mat->nooffprocentries, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Setting off process block indexed row %" PetscInt_FMT " even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set", im[i]); 470ab26458aSBarry Smith if (!baij->donotstash) { 471ff2fd236SBarry Smith if (roworiented) { 4729566063dSJacob Faibussowitsch PetscCall(MatStashValuesRowBlocked_Private(&mat->bstash, im[i], n, in, v, m, n, i)); 473ff2fd236SBarry Smith } else { 4749566063dSJacob Faibussowitsch PetscCall(MatStashValuesColBlocked_Private(&mat->bstash, im[i], n, in, v, m, n, i)); 475ff2fd236SBarry Smith } 476abef11f7SSatish Balay } 477ab26458aSBarry Smith } 478ab26458aSBarry Smith } 4793ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 480ab26458aSBarry Smith } 4816fa18ffdSBarry Smith 4820bdbc534SSatish Balay #define HASH_KEY 0.6180339887 483b24ad042SBarry Smith #define HASH(size, key, tmp) (tmp = (key)*HASH_KEY, (PetscInt)((size) * (tmp - (PetscInt)tmp))) 484b24ad042SBarry Smith /* #define HASH(size,key) ((PetscInt)((size)*fmod(((key)*HASH_KEY),1))) */ 485b24ad042SBarry Smith /* #define HASH(size,key,tmp) ((PetscInt)((size)*fmod(((key)*HASH_KEY),1))) */ 48666976f2fSJacob Faibussowitsch static PetscErrorCode MatSetValues_MPIBAIJ_HT(Mat mat, PetscInt m, const PetscInt im[], PetscInt n, const PetscInt in[], const PetscScalar v[], InsertMode addv) 487d71ae5a4SJacob Faibussowitsch { 4880bdbc534SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 489ace3abfcSBarry Smith PetscBool roworiented = baij->roworiented; 490b24ad042SBarry Smith PetscInt i, j, row, col; 491d0f46423SBarry Smith PetscInt rstart_orig = mat->rmap->rstart; 492d0f46423SBarry Smith PetscInt rend_orig = mat->rmap->rend, Nbs = baij->Nbs; 493d0f46423SBarry Smith PetscInt h1, key, size = baij->ht_size, bs = mat->rmap->bs, *HT = baij->ht, idx; 494329f5518SBarry Smith PetscReal tmp; 4953eda8832SBarry Smith MatScalar **HD = baij->hd, value; 496b24ad042SBarry Smith PetscInt total_ct = baij->ht_total_ct, insert_ct = baij->ht_insert_ct; 4970bdbc534SSatish Balay 4980bdbc534SSatish Balay PetscFunctionBegin; 4990bdbc534SSatish Balay for (i = 0; i < m; i++) { 50076bd3646SJed Brown if (PetscDefined(USE_DEBUG)) { 5015f80ce2aSJacob Faibussowitsch PetscCheck(im[i] >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Negative row"); 5025f80ce2aSJacob Faibussowitsch PetscCheck(im[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, im[i], mat->rmap->N - 1); 50376bd3646SJed Brown } 5040bdbc534SSatish Balay row = im[i]; 505c2760754SSatish Balay if (row >= rstart_orig && row < rend_orig) { 5060bdbc534SSatish Balay for (j = 0; j < n; j++) { 5070bdbc534SSatish Balay col = in[j]; 508db4deed7SKarl Rupp if (roworiented) value = v[i * n + j]; 509db4deed7SKarl Rupp else value = v[i + j * m]; 510b24ad042SBarry Smith /* Look up PetscInto the Hash Table */ 511c2760754SSatish Balay key = (row / bs) * Nbs + (col / bs) + 1; 512c2760754SSatish Balay h1 = HASH(size, key, tmp); 5130bdbc534SSatish Balay 514c2760754SSatish Balay idx = h1; 51576bd3646SJed Brown if (PetscDefined(USE_DEBUG)) { 516187ce0cbSSatish Balay insert_ct++; 517187ce0cbSSatish Balay total_ct++; 518187ce0cbSSatish Balay if (HT[idx] != key) { 5199371c9d4SSatish Balay for (idx = h1; (idx < size) && (HT[idx] != key); idx++, total_ct++) 5209371c9d4SSatish Balay ; 521187ce0cbSSatish Balay if (idx == size) { 5229371c9d4SSatish Balay for (idx = 0; (idx < h1) && (HT[idx] != key); idx++, total_ct++) 5239371c9d4SSatish Balay ; 5245f80ce2aSJacob Faibussowitsch PetscCheck(idx != h1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "(%" PetscInt_FMT ",%" PetscInt_FMT ") has no entry in the hash table", row, col); 525187ce0cbSSatish Balay } 526187ce0cbSSatish Balay } 52776bd3646SJed Brown } else if (HT[idx] != key) { 5289371c9d4SSatish Balay for (idx = h1; (idx < size) && (HT[idx] != key); idx++) 5299371c9d4SSatish Balay ; 530c2760754SSatish Balay if (idx == size) { 5319371c9d4SSatish Balay for (idx = 0; (idx < h1) && (HT[idx] != key); idx++) 5329371c9d4SSatish Balay ; 5335f80ce2aSJacob Faibussowitsch PetscCheck(idx != h1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "(%" PetscInt_FMT ",%" PetscInt_FMT ") has no entry in the hash table", row, col); 534c2760754SSatish Balay } 535c2760754SSatish Balay } 536c2760754SSatish Balay /* A HASH table entry is found, so insert the values at the correct address */ 537c2760754SSatish Balay if (addv == ADD_VALUES) *(HD[idx] + (col % bs) * bs + (row % bs)) += value; 538c2760754SSatish Balay else *(HD[idx] + (col % bs) * bs + (row % bs)) = value; 5390bdbc534SSatish Balay } 54026fbe8dcSKarl Rupp } else if (!baij->donotstash) { 541ff2fd236SBarry Smith if (roworiented) { 5429566063dSJacob Faibussowitsch PetscCall(MatStashValuesRow_Private(&mat->stash, im[i], n, in, v + i * n, PETSC_FALSE)); 543ff2fd236SBarry Smith } else { 5449566063dSJacob Faibussowitsch PetscCall(MatStashValuesCol_Private(&mat->stash, im[i], n, in, v + i, m, PETSC_FALSE)); 5450bdbc534SSatish Balay } 5460bdbc534SSatish Balay } 5470bdbc534SSatish Balay } 54876bd3646SJed Brown if (PetscDefined(USE_DEBUG)) { 549abf3b562SBarry Smith baij->ht_total_ct += total_ct; 550abf3b562SBarry Smith baij->ht_insert_ct += insert_ct; 55176bd3646SJed Brown } 5523ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5530bdbc534SSatish Balay } 5540bdbc534SSatish Balay 55566976f2fSJacob Faibussowitsch static PetscErrorCode MatSetValuesBlocked_MPIBAIJ_HT(Mat mat, PetscInt m, const PetscInt im[], PetscInt n, const PetscInt in[], const PetscScalar v[], InsertMode addv) 556d71ae5a4SJacob Faibussowitsch { 5570bdbc534SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 558ace3abfcSBarry Smith PetscBool roworiented = baij->roworiented; 559b24ad042SBarry Smith PetscInt i, j, ii, jj, row, col; 560899cda47SBarry Smith PetscInt rstart = baij->rstartbs; 561d0f46423SBarry Smith PetscInt rend = mat->rmap->rend, stepval, bs = mat->rmap->bs, bs2 = baij->bs2, nbs2 = n * bs2; 562b24ad042SBarry Smith PetscInt h1, key, size = baij->ht_size, idx, *HT = baij->ht, Nbs = baij->Nbs; 563329f5518SBarry Smith PetscReal tmp; 5643eda8832SBarry Smith MatScalar **HD = baij->hd, *baij_a; 565dd6ea824SBarry Smith const PetscScalar *v_t, *value; 566b24ad042SBarry Smith PetscInt total_ct = baij->ht_total_ct, insert_ct = baij->ht_insert_ct; 5670bdbc534SSatish Balay 568d0a41580SSatish Balay PetscFunctionBegin; 56926fbe8dcSKarl Rupp if (roworiented) stepval = (n - 1) * bs; 57026fbe8dcSKarl Rupp else stepval = (m - 1) * bs; 57126fbe8dcSKarl Rupp 5720bdbc534SSatish Balay for (i = 0; i < m; i++) { 57376bd3646SJed Brown if (PetscDefined(USE_DEBUG)) { 5745f80ce2aSJacob Faibussowitsch PetscCheck(im[i] >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Negative row: %" PetscInt_FMT, im[i]); 5755f80ce2aSJacob Faibussowitsch PetscCheck(im[i] < baij->Mbs, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, im[i], baij->Mbs - 1); 57676bd3646SJed Brown } 5770bdbc534SSatish Balay row = im[i]; 578ab715e2cSSatish Balay v_t = v + i * nbs2; 579c2760754SSatish Balay if (row >= rstart && row < rend) { 5800bdbc534SSatish Balay for (j = 0; j < n; j++) { 5810bdbc534SSatish Balay col = in[j]; 5820bdbc534SSatish Balay 5830bdbc534SSatish Balay /* Look up into the Hash Table */ 584c2760754SSatish Balay key = row * Nbs + col + 1; 585c2760754SSatish Balay h1 = HASH(size, key, tmp); 5860bdbc534SSatish Balay 587c2760754SSatish Balay idx = h1; 58876bd3646SJed Brown if (PetscDefined(USE_DEBUG)) { 589187ce0cbSSatish Balay total_ct++; 590187ce0cbSSatish Balay insert_ct++; 591187ce0cbSSatish Balay if (HT[idx] != key) { 5929371c9d4SSatish Balay for (idx = h1; (idx < size) && (HT[idx] != key); idx++, total_ct++) 5939371c9d4SSatish Balay ; 594187ce0cbSSatish Balay if (idx == size) { 5959371c9d4SSatish Balay for (idx = 0; (idx < h1) && (HT[idx] != key); idx++, total_ct++) 5969371c9d4SSatish Balay ; 5975f80ce2aSJacob Faibussowitsch PetscCheck(idx != h1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "(%" PetscInt_FMT ",%" PetscInt_FMT ") has no entry in the hash table", row, col); 598187ce0cbSSatish Balay } 599187ce0cbSSatish Balay } 60076bd3646SJed Brown } else if (HT[idx] != key) { 6019371c9d4SSatish Balay for (idx = h1; (idx < size) && (HT[idx] != key); idx++) 6029371c9d4SSatish Balay ; 603c2760754SSatish Balay if (idx == size) { 6049371c9d4SSatish Balay for (idx = 0; (idx < h1) && (HT[idx] != key); idx++) 6059371c9d4SSatish Balay ; 6065f80ce2aSJacob Faibussowitsch PetscCheck(idx != h1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "(%" PetscInt_FMT ",%" PetscInt_FMT ") has no entry in the hash table", row, col); 607c2760754SSatish Balay } 608c2760754SSatish Balay } 609c2760754SSatish Balay baij_a = HD[idx]; 6100bdbc534SSatish Balay if (roworiented) { 611c2760754SSatish Balay /*value = v + i*(stepval+bs)*bs + j*bs;*/ 612187ce0cbSSatish Balay /* value = v + (i*(stepval+bs)+j)*bs; */ 613187ce0cbSSatish Balay value = v_t; 614187ce0cbSSatish Balay v_t += bs; 615fef45726SSatish Balay if (addv == ADD_VALUES) { 616c2760754SSatish Balay for (ii = 0; ii < bs; ii++, value += stepval) { 617ad540459SPierre Jolivet for (jj = ii; jj < bs2; jj += bs) baij_a[jj] += *value++; 618b4cc0f5aSSatish Balay } 619fef45726SSatish Balay } else { 620c2760754SSatish Balay for (ii = 0; ii < bs; ii++, value += stepval) { 621ad540459SPierre Jolivet for (jj = ii; jj < bs2; jj += bs) baij_a[jj] = *value++; 622fef45726SSatish Balay } 623fef45726SSatish Balay } 6240bdbc534SSatish Balay } else { 6250bdbc534SSatish Balay value = v + j * (stepval + bs) * bs + i * bs; 626fef45726SSatish Balay if (addv == ADD_VALUES) { 627b4cc0f5aSSatish Balay for (ii = 0; ii < bs; ii++, value += stepval, baij_a += bs) { 628ad540459SPierre Jolivet for (jj = 0; jj < bs; jj++) baij_a[jj] += *value++; 629fef45726SSatish Balay } 630fef45726SSatish Balay } else { 631fef45726SSatish Balay for (ii = 0; ii < bs; ii++, value += stepval, baij_a += bs) { 632ad540459SPierre Jolivet for (jj = 0; jj < bs; jj++) baij_a[jj] = *value++; 633b4cc0f5aSSatish Balay } 6340bdbc534SSatish Balay } 6350bdbc534SSatish Balay } 6360bdbc534SSatish Balay } 6370bdbc534SSatish Balay } else { 6380bdbc534SSatish Balay if (!baij->donotstash) { 6390bdbc534SSatish Balay if (roworiented) { 6409566063dSJacob Faibussowitsch PetscCall(MatStashValuesRowBlocked_Private(&mat->bstash, im[i], n, in, v, m, n, i)); 6410bdbc534SSatish Balay } else { 6429566063dSJacob Faibussowitsch PetscCall(MatStashValuesColBlocked_Private(&mat->bstash, im[i], n, in, v, m, n, i)); 6430bdbc534SSatish Balay } 6440bdbc534SSatish Balay } 6450bdbc534SSatish Balay } 6460bdbc534SSatish Balay } 64776bd3646SJed Brown if (PetscDefined(USE_DEBUG)) { 648abf3b562SBarry Smith baij->ht_total_ct += total_ct; 649abf3b562SBarry Smith baij->ht_insert_ct += insert_ct; 65076bd3646SJed Brown } 6513ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6520bdbc534SSatish Balay } 653133cdb44SSatish Balay 65466976f2fSJacob Faibussowitsch static PetscErrorCode MatGetValues_MPIBAIJ(Mat mat, PetscInt m, const PetscInt idxm[], PetscInt n, const PetscInt idxn[], PetscScalar v[]) 655d71ae5a4SJacob Faibussowitsch { 656d6de1c52SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 657d0f46423SBarry Smith PetscInt bs = mat->rmap->bs, i, j, bsrstart = mat->rmap->rstart, bsrend = mat->rmap->rend; 658d0f46423SBarry Smith PetscInt bscstart = mat->cmap->rstart, bscend = mat->cmap->rend, row, col, data; 659d6de1c52SSatish Balay 660133cdb44SSatish Balay PetscFunctionBegin; 661d6de1c52SSatish Balay for (i = 0; i < m; i++) { 66254c59aa7SJacob Faibussowitsch if (idxm[i] < 0) continue; /* negative row */ 66354c59aa7SJacob Faibussowitsch PetscCheck(idxm[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, idxm[i], mat->rmap->N - 1); 664d6de1c52SSatish Balay if (idxm[i] >= bsrstart && idxm[i] < bsrend) { 665d6de1c52SSatish Balay row = idxm[i] - bsrstart; 666d6de1c52SSatish Balay for (j = 0; j < n; j++) { 66754c59aa7SJacob Faibussowitsch if (idxn[j] < 0) continue; /* negative column */ 66854c59aa7SJacob Faibussowitsch PetscCheck(idxn[j] < mat->cmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, idxn[j], mat->cmap->N - 1); 669d6de1c52SSatish Balay if (idxn[j] >= bscstart && idxn[j] < bscend) { 670d6de1c52SSatish Balay col = idxn[j] - bscstart; 6719566063dSJacob Faibussowitsch PetscCall(MatGetValues_SeqBAIJ(baij->A, 1, &row, 1, &col, v + i * n + j)); 672d64ed03dSBarry Smith } else { 67348a46eb9SPierre Jolivet if (!baij->colmap) PetscCall(MatCreateColmap_MPIBAIJ_Private(mat)); 674aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 675eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIGetWithDefault(baij->colmap, idxn[j] / bs + 1, 0, &data)); 676fa46199cSSatish Balay data--; 67748e59246SSatish Balay #else 67848e59246SSatish Balay data = baij->colmap[idxn[j] / bs] - 1; 67948e59246SSatish Balay #endif 68048e59246SSatish Balay if ((data < 0) || (baij->garray[data / bs] != idxn[j] / bs)) *(v + i * n + j) = 0.0; 681d9d09a02SSatish Balay else { 68248e59246SSatish Balay col = data + idxn[j] % bs; 6839566063dSJacob Faibussowitsch PetscCall(MatGetValues_SeqBAIJ(baij->B, 1, &row, 1, &col, v + i * n + j)); 684d6de1c52SSatish Balay } 685d6de1c52SSatish Balay } 686d6de1c52SSatish Balay } 687f23aa3ddSBarry Smith } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "Only local values currently supported"); 688d6de1c52SSatish Balay } 6893ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 690d6de1c52SSatish Balay } 691d6de1c52SSatish Balay 69266976f2fSJacob Faibussowitsch static PetscErrorCode MatNorm_MPIBAIJ(Mat mat, NormType type, PetscReal *nrm) 693d71ae5a4SJacob Faibussowitsch { 694d6de1c52SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 695d6de1c52SSatish Balay Mat_SeqBAIJ *amat = (Mat_SeqBAIJ *)baij->A->data, *bmat = (Mat_SeqBAIJ *)baij->B->data; 696d0f46423SBarry Smith PetscInt i, j, bs2 = baij->bs2, bs = baij->A->rmap->bs, nz, row, col; 697329f5518SBarry Smith PetscReal sum = 0.0; 6983eda8832SBarry Smith MatScalar *v; 699d6de1c52SSatish Balay 700d64ed03dSBarry Smith PetscFunctionBegin; 701d6de1c52SSatish Balay if (baij->size == 1) { 7029566063dSJacob Faibussowitsch PetscCall(MatNorm(baij->A, type, nrm)); 703d6de1c52SSatish Balay } else { 704d6de1c52SSatish Balay if (type == NORM_FROBENIUS) { 705d6de1c52SSatish Balay v = amat->a; 7068a62d963SHong Zhang nz = amat->nz * bs2; 7078a62d963SHong Zhang for (i = 0; i < nz; i++) { 7089371c9d4SSatish Balay sum += PetscRealPart(PetscConj(*v) * (*v)); 7099371c9d4SSatish Balay v++; 710d6de1c52SSatish Balay } 711d6de1c52SSatish Balay v = bmat->a; 7128a62d963SHong Zhang nz = bmat->nz * bs2; 7138a62d963SHong Zhang for (i = 0; i < nz; i++) { 7149371c9d4SSatish Balay sum += PetscRealPart(PetscConj(*v) * (*v)); 7159371c9d4SSatish Balay v++; 716d6de1c52SSatish Balay } 7171c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&sum, nrm, 1, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)mat))); 7188f1a2a5eSBarry Smith *nrm = PetscSqrtReal(*nrm); 7198a62d963SHong Zhang } else if (type == NORM_1) { /* max column sum */ 7208a62d963SHong Zhang PetscReal *tmp, *tmp2; 721899cda47SBarry Smith PetscInt *jj, *garray = baij->garray, cstart = baij->rstartbs; 7229566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(mat->cmap->N, &tmp)); 7239566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(mat->cmap->N, &tmp2)); 7249371c9d4SSatish Balay v = amat->a; 7259371c9d4SSatish Balay jj = amat->j; 7268a62d963SHong Zhang for (i = 0; i < amat->nz; i++) { 7278a62d963SHong Zhang for (j = 0; j < bs; j++) { 7288a62d963SHong Zhang col = bs * (cstart + *jj) + j; /* column index */ 7298a62d963SHong Zhang for (row = 0; row < bs; row++) { 7309371c9d4SSatish Balay tmp[col] += PetscAbsScalar(*v); 7319371c9d4SSatish Balay v++; 7328a62d963SHong Zhang } 7338a62d963SHong Zhang } 7348a62d963SHong Zhang jj++; 7358a62d963SHong Zhang } 7369371c9d4SSatish Balay v = bmat->a; 7379371c9d4SSatish Balay jj = bmat->j; 7388a62d963SHong Zhang for (i = 0; i < bmat->nz; i++) { 7398a62d963SHong Zhang for (j = 0; j < bs; j++) { 7408a62d963SHong Zhang col = bs * garray[*jj] + j; 7418a62d963SHong Zhang for (row = 0; row < bs; row++) { 7429371c9d4SSatish Balay tmp[col] += PetscAbsScalar(*v); 7439371c9d4SSatish Balay v++; 7448a62d963SHong Zhang } 7458a62d963SHong Zhang } 7468a62d963SHong Zhang jj++; 7478a62d963SHong Zhang } 7481c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(tmp, tmp2, mat->cmap->N, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)mat))); 7498a62d963SHong Zhang *nrm = 0.0; 750d0f46423SBarry Smith for (j = 0; j < mat->cmap->N; j++) { 7518a62d963SHong Zhang if (tmp2[j] > *nrm) *nrm = tmp2[j]; 7528a62d963SHong Zhang } 7539566063dSJacob Faibussowitsch PetscCall(PetscFree(tmp)); 7549566063dSJacob Faibussowitsch PetscCall(PetscFree(tmp2)); 7558a62d963SHong Zhang } else if (type == NORM_INFINITY) { /* max row sum */ 756577dd1f9SKris Buschelman PetscReal *sums; 7579566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(bs, &sums)); 7588a62d963SHong Zhang sum = 0.0; 7598a62d963SHong Zhang for (j = 0; j < amat->mbs; j++) { 7608a62d963SHong Zhang for (row = 0; row < bs; row++) sums[row] = 0.0; 7618a62d963SHong Zhang v = amat->a + bs2 * amat->i[j]; 7628a62d963SHong Zhang nz = amat->i[j + 1] - amat->i[j]; 7638a62d963SHong Zhang for (i = 0; i < nz; i++) { 7648a62d963SHong Zhang for (col = 0; col < bs; col++) { 7658a62d963SHong Zhang for (row = 0; row < bs; row++) { 7669371c9d4SSatish Balay sums[row] += PetscAbsScalar(*v); 7679371c9d4SSatish Balay v++; 7688a62d963SHong Zhang } 7698a62d963SHong Zhang } 7708a62d963SHong Zhang } 7718a62d963SHong Zhang v = bmat->a + bs2 * bmat->i[j]; 7728a62d963SHong Zhang nz = bmat->i[j + 1] - bmat->i[j]; 7738a62d963SHong Zhang for (i = 0; i < nz; i++) { 7748a62d963SHong Zhang for (col = 0; col < bs; col++) { 7758a62d963SHong Zhang for (row = 0; row < bs; row++) { 7769371c9d4SSatish Balay sums[row] += PetscAbsScalar(*v); 7779371c9d4SSatish Balay v++; 7788a62d963SHong Zhang } 7798a62d963SHong Zhang } 7808a62d963SHong Zhang } 7818a62d963SHong Zhang for (row = 0; row < bs; row++) { 7828a62d963SHong Zhang if (sums[row] > sum) sum = sums[row]; 7838a62d963SHong Zhang } 7848a62d963SHong Zhang } 7851c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&sum, nrm, 1, MPIU_REAL, MPIU_MAX, PetscObjectComm((PetscObject)mat))); 7869566063dSJacob Faibussowitsch PetscCall(PetscFree(sums)); 787ce94432eSBarry Smith } else SETERRQ(PetscObjectComm((PetscObject)mat), PETSC_ERR_SUP, "No support for this norm yet"); 788d64ed03dSBarry Smith } 7893ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 790d6de1c52SSatish Balay } 79157b952d6SSatish Balay 792fef45726SSatish Balay /* 793fef45726SSatish Balay Creates the hash table, and sets the table 794fef45726SSatish Balay This table is created only once. 795fef45726SSatish Balay If new entried need to be added to the matrix 796fef45726SSatish Balay then the hash table has to be destroyed and 797fef45726SSatish Balay recreated. 798fef45726SSatish Balay */ 79966976f2fSJacob Faibussowitsch static PetscErrorCode MatCreateHashTable_MPIBAIJ_Private(Mat mat, PetscReal factor) 800d71ae5a4SJacob Faibussowitsch { 801596b8d2eSBarry Smith Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 802596b8d2eSBarry Smith Mat A = baij->A, B = baij->B; 803596b8d2eSBarry Smith Mat_SeqBAIJ *a = (Mat_SeqBAIJ *)A->data, *b = (Mat_SeqBAIJ *)B->data; 804b24ad042SBarry Smith PetscInt i, j, k, nz = a->nz + b->nz, h1, *ai = a->i, *aj = a->j, *bi = b->i, *bj = b->j; 805fca92195SBarry Smith PetscInt ht_size, bs2 = baij->bs2, rstart = baij->rstartbs; 806899cda47SBarry Smith PetscInt cstart = baij->cstartbs, *garray = baij->garray, row, col, Nbs = baij->Nbs; 807b24ad042SBarry Smith PetscInt *HT, key; 8083eda8832SBarry Smith MatScalar **HD; 809329f5518SBarry Smith PetscReal tmp; 8106cf91177SBarry Smith #if defined(PETSC_USE_INFO) 811b24ad042SBarry Smith PetscInt ct = 0, max = 0; 8124a15367fSSatish Balay #endif 813fef45726SSatish Balay 814d64ed03dSBarry Smith PetscFunctionBegin; 8153ba16761SJacob Faibussowitsch if (baij->ht) PetscFunctionReturn(PETSC_SUCCESS); 816fef45726SSatish Balay 817fca92195SBarry Smith baij->ht_size = (PetscInt)(factor * nz); 818fca92195SBarry Smith ht_size = baij->ht_size; 8190bdbc534SSatish Balay 820fef45726SSatish Balay /* Allocate Memory for Hash Table */ 8219566063dSJacob Faibussowitsch PetscCall(PetscCalloc2(ht_size, &baij->hd, ht_size, &baij->ht)); 822b9e4cc15SSatish Balay HD = baij->hd; 823a07cd24cSSatish Balay HT = baij->ht; 824b9e4cc15SSatish Balay 825596b8d2eSBarry Smith /* Loop Over A */ 8260bdbc534SSatish Balay for (i = 0; i < a->mbs; i++) { 827596b8d2eSBarry Smith for (j = ai[i]; j < ai[i + 1]; j++) { 8280bdbc534SSatish Balay row = i + rstart; 8290bdbc534SSatish Balay col = aj[j] + cstart; 830596b8d2eSBarry Smith 831187ce0cbSSatish Balay key = row * Nbs + col + 1; 832fca92195SBarry Smith h1 = HASH(ht_size, key, tmp); 833fca92195SBarry Smith for (k = 0; k < ht_size; k++) { 834fca92195SBarry Smith if (!HT[(h1 + k) % ht_size]) { 835fca92195SBarry Smith HT[(h1 + k) % ht_size] = key; 836fca92195SBarry Smith HD[(h1 + k) % ht_size] = a->a + j * bs2; 837596b8d2eSBarry Smith break; 8386cf91177SBarry Smith #if defined(PETSC_USE_INFO) 839187ce0cbSSatish Balay } else { 840187ce0cbSSatish Balay ct++; 841187ce0cbSSatish Balay #endif 842596b8d2eSBarry Smith } 843187ce0cbSSatish Balay } 8446cf91177SBarry Smith #if defined(PETSC_USE_INFO) 845187ce0cbSSatish Balay if (k > max) max = k; 846187ce0cbSSatish Balay #endif 847596b8d2eSBarry Smith } 848596b8d2eSBarry Smith } 849596b8d2eSBarry Smith /* Loop Over B */ 8500bdbc534SSatish Balay for (i = 0; i < b->mbs; i++) { 851596b8d2eSBarry Smith for (j = bi[i]; j < bi[i + 1]; j++) { 8520bdbc534SSatish Balay row = i + rstart; 8530bdbc534SSatish Balay col = garray[bj[j]]; 854187ce0cbSSatish Balay key = row * Nbs + col + 1; 855fca92195SBarry Smith h1 = HASH(ht_size, key, tmp); 856fca92195SBarry Smith for (k = 0; k < ht_size; k++) { 857fca92195SBarry Smith if (!HT[(h1 + k) % ht_size]) { 858fca92195SBarry Smith HT[(h1 + k) % ht_size] = key; 859fca92195SBarry Smith HD[(h1 + k) % ht_size] = b->a + j * bs2; 860596b8d2eSBarry Smith break; 8616cf91177SBarry Smith #if defined(PETSC_USE_INFO) 862187ce0cbSSatish Balay } else { 863187ce0cbSSatish Balay ct++; 864187ce0cbSSatish Balay #endif 865596b8d2eSBarry Smith } 866187ce0cbSSatish Balay } 8676cf91177SBarry Smith #if defined(PETSC_USE_INFO) 868187ce0cbSSatish Balay if (k > max) max = k; 869187ce0cbSSatish Balay #endif 870596b8d2eSBarry Smith } 871596b8d2eSBarry Smith } 872596b8d2eSBarry Smith 873596b8d2eSBarry Smith /* Print Summary */ 8746cf91177SBarry Smith #if defined(PETSC_USE_INFO) 875fca92195SBarry Smith for (i = 0, j = 0; i < ht_size; i++) { 87626fbe8dcSKarl Rupp if (HT[i]) j++; 877c38d4ed2SBarry Smith } 8789566063dSJacob Faibussowitsch PetscCall(PetscInfo(mat, "Average Search = %5.2g,max search = %" PetscInt_FMT "\n", (!j) ? (double)0.0 : (double)(((PetscReal)(ct + j)) / (double)j), max)); 879187ce0cbSSatish Balay #endif 8803ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 881596b8d2eSBarry Smith } 88257b952d6SSatish Balay 88366976f2fSJacob Faibussowitsch static PetscErrorCode MatAssemblyBegin_MPIBAIJ(Mat mat, MatAssemblyType mode) 884d71ae5a4SJacob Faibussowitsch { 885bbb85fb3SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 886b24ad042SBarry Smith PetscInt nstash, reallocs; 887bbb85fb3SSatish Balay 888bbb85fb3SSatish Balay PetscFunctionBegin; 8893ba16761SJacob Faibussowitsch if (baij->donotstash || mat->nooffprocentries) PetscFunctionReturn(PETSC_SUCCESS); 890bbb85fb3SSatish Balay 8919566063dSJacob Faibussowitsch PetscCall(MatStashScatterBegin_Private(mat, &mat->stash, mat->rmap->range)); 8929566063dSJacob Faibussowitsch PetscCall(MatStashScatterBegin_Private(mat, &mat->bstash, baij->rangebs)); 8939566063dSJacob Faibussowitsch PetscCall(MatStashGetInfo_Private(&mat->stash, &nstash, &reallocs)); 8949566063dSJacob Faibussowitsch PetscCall(PetscInfo(mat, "Stash has %" PetscInt_FMT " entries,uses %" PetscInt_FMT " mallocs.\n", nstash, reallocs)); 8959566063dSJacob Faibussowitsch PetscCall(MatStashGetInfo_Private(&mat->bstash, &nstash, &reallocs)); 8969566063dSJacob Faibussowitsch PetscCall(PetscInfo(mat, "Block-Stash has %" PetscInt_FMT " entries, uses %" PetscInt_FMT " mallocs.\n", nstash, reallocs)); 8973ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 898bbb85fb3SSatish Balay } 899bbb85fb3SSatish Balay 90066976f2fSJacob Faibussowitsch static PetscErrorCode MatAssemblyEnd_MPIBAIJ(Mat mat, MatAssemblyType mode) 901d71ae5a4SJacob Faibussowitsch { 902bbb85fb3SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 90391c97fd4SSatish Balay Mat_SeqBAIJ *a = (Mat_SeqBAIJ *)baij->A->data; 904b24ad042SBarry Smith PetscInt i, j, rstart, ncols, flg, bs2 = baij->bs2; 905e44c0bd4SBarry Smith PetscInt *row, *col; 906ace3abfcSBarry Smith PetscBool r1, r2, r3, other_disassembled; 9073eda8832SBarry Smith MatScalar *val; 908b24ad042SBarry Smith PetscMPIInt n; 909bbb85fb3SSatish Balay 910bbb85fb3SSatish Balay PetscFunctionBegin; 9115fd66863SKarl Rupp /* do not use 'b=(Mat_SeqBAIJ*)baij->B->data' as B can be reset in disassembly */ 9124cb17eb5SBarry Smith if (!baij->donotstash && !mat->nooffprocentries) { 913a2d1c673SSatish Balay while (1) { 9149566063dSJacob Faibussowitsch PetscCall(MatStashScatterGetMesg_Private(&mat->stash, &n, &row, &col, &val, &flg)); 915a2d1c673SSatish Balay if (!flg) break; 916a2d1c673SSatish Balay 917bbb85fb3SSatish Balay for (i = 0; i < n;) { 918bbb85fb3SSatish Balay /* Now identify the consecutive vals belonging to the same row */ 91926fbe8dcSKarl Rupp for (j = i, rstart = row[j]; j < n; j++) { 92026fbe8dcSKarl Rupp if (row[j] != rstart) break; 92126fbe8dcSKarl Rupp } 922bbb85fb3SSatish Balay if (j < n) ncols = j - i; 923bbb85fb3SSatish Balay else ncols = n - i; 924bbb85fb3SSatish Balay /* Now assemble all these values with a single function call */ 9259566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPIBAIJ(mat, 1, row + i, ncols, col + i, val + i, mat->insertmode)); 926bbb85fb3SSatish Balay i = j; 927bbb85fb3SSatish Balay } 928bbb85fb3SSatish Balay } 9299566063dSJacob Faibussowitsch PetscCall(MatStashScatterEnd_Private(&mat->stash)); 930a2d1c673SSatish Balay /* Now process the block-stash. Since the values are stashed column-oriented, 931a2d1c673SSatish Balay set the roworiented flag to column oriented, and after MatSetValues() 932a2d1c673SSatish Balay restore the original flags */ 933a2d1c673SSatish Balay r1 = baij->roworiented; 934a2d1c673SSatish Balay r2 = a->roworiented; 93591c97fd4SSatish Balay r3 = ((Mat_SeqBAIJ *)baij->B->data)->roworiented; 93626fbe8dcSKarl Rupp 9377c922b88SBarry Smith baij->roworiented = PETSC_FALSE; 9387c922b88SBarry Smith a->roworiented = PETSC_FALSE; 93926fbe8dcSKarl Rupp 94091c97fd4SSatish Balay (((Mat_SeqBAIJ *)baij->B->data))->roworiented = PETSC_FALSE; /* b->roworiented */ 941a2d1c673SSatish Balay while (1) { 9429566063dSJacob Faibussowitsch PetscCall(MatStashScatterGetMesg_Private(&mat->bstash, &n, &row, &col, &val, &flg)); 943a2d1c673SSatish Balay if (!flg) break; 944a2d1c673SSatish Balay 945a2d1c673SSatish Balay for (i = 0; i < n;) { 946a2d1c673SSatish Balay /* Now identify the consecutive vals belonging to the same row */ 94726fbe8dcSKarl Rupp for (j = i, rstart = row[j]; j < n; j++) { 94826fbe8dcSKarl Rupp if (row[j] != rstart) break; 94926fbe8dcSKarl Rupp } 950a2d1c673SSatish Balay if (j < n) ncols = j - i; 951a2d1c673SSatish Balay else ncols = n - i; 9529566063dSJacob Faibussowitsch PetscCall(MatSetValuesBlocked_MPIBAIJ(mat, 1, row + i, ncols, col + i, val + i * bs2, mat->insertmode)); 953a2d1c673SSatish Balay i = j; 954a2d1c673SSatish Balay } 955a2d1c673SSatish Balay } 9569566063dSJacob Faibussowitsch PetscCall(MatStashScatterEnd_Private(&mat->bstash)); 95726fbe8dcSKarl Rupp 958a2d1c673SSatish Balay baij->roworiented = r1; 959a2d1c673SSatish Balay a->roworiented = r2; 96026fbe8dcSKarl Rupp 96191c97fd4SSatish Balay ((Mat_SeqBAIJ *)baij->B->data)->roworiented = r3; /* b->roworiented */ 962bbb85fb3SSatish Balay } 963bbb85fb3SSatish Balay 9649566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(baij->A, mode)); 9659566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(baij->A, mode)); 966bbb85fb3SSatish Balay 967bbb85fb3SSatish Balay /* determine if any processor has disassembled, if so we must 9686aad120cSJose E. Roman also disassemble ourselves, in order that we may reassemble. */ 969bbb85fb3SSatish Balay /* 970bbb85fb3SSatish Balay if nonzero structure of submatrix B cannot change then we know that 971bbb85fb3SSatish Balay no processor disassembled thus we can skip this stuff 972bbb85fb3SSatish Balay */ 973bbb85fb3SSatish Balay if (!((Mat_SeqBAIJ *)baij->B->data)->nonew) { 9745f9db2b2SJunchao Zhang PetscCall(MPIU_Allreduce(&mat->was_assembled, &other_disassembled, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)mat))); 97548a46eb9SPierre Jolivet if (mat->was_assembled && !other_disassembled) PetscCall(MatDisAssemble_MPIBAIJ(mat)); 976bbb85fb3SSatish Balay } 977bbb85fb3SSatish Balay 97848a46eb9SPierre Jolivet if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) PetscCall(MatSetUpMultiply_MPIBAIJ(mat)); 9799566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(baij->B, mode)); 9809566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(baij->B, mode)); 981bbb85fb3SSatish Balay 9826cf91177SBarry Smith #if defined(PETSC_USE_INFO) 983bbb85fb3SSatish Balay if (baij->ht && mode == MAT_FINAL_ASSEMBLY) { 9849566063dSJacob Faibussowitsch PetscCall(PetscInfo(mat, "Average Hash Table Search in MatSetValues = %5.2f\n", (double)((PetscReal)baij->ht_total_ct) / baij->ht_insert_ct)); 98526fbe8dcSKarl Rupp 986bbb85fb3SSatish Balay baij->ht_total_ct = 0; 987bbb85fb3SSatish Balay baij->ht_insert_ct = 0; 988bbb85fb3SSatish Balay } 989bbb85fb3SSatish Balay #endif 990bbb85fb3SSatish Balay if (baij->ht_flag && !baij->ht && mode == MAT_FINAL_ASSEMBLY) { 9919566063dSJacob Faibussowitsch PetscCall(MatCreateHashTable_MPIBAIJ_Private(mat, baij->ht_fact)); 99226fbe8dcSKarl Rupp 993bbb85fb3SSatish Balay mat->ops->setvalues = MatSetValues_MPIBAIJ_HT; 994bbb85fb3SSatish Balay mat->ops->setvaluesblocked = MatSetValuesBlocked_MPIBAIJ_HT; 995bbb85fb3SSatish Balay } 996bbb85fb3SSatish Balay 9979566063dSJacob Faibussowitsch PetscCall(PetscFree2(baij->rowvalues, baij->rowindices)); 99826fbe8dcSKarl Rupp 999f4259b30SLisandro Dalcin baij->rowvalues = NULL; 10004f9cfa9eSBarry Smith 10014f9cfa9eSBarry Smith /* if no new nonzero locations are allowed in matrix then only set the matrix state the first time through */ 10024f9cfa9eSBarry Smith if ((!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) || !((Mat_SeqBAIJ *)(baij->A->data))->nonew) { 1003e56f5c9eSBarry Smith PetscObjectState state = baij->A->nonzerostate + baij->B->nonzerostate; 10041c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&state, &mat->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)mat))); 1005e56f5c9eSBarry Smith } 10063ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1007bbb85fb3SSatish Balay } 100857b952d6SSatish Balay 10097da1fb6eSBarry Smith extern PetscErrorCode MatView_SeqBAIJ(Mat, PetscViewer); 10109804daf3SBarry Smith #include <petscdraw.h> 1011d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatView_MPIBAIJ_ASCIIorDraworSocket(Mat mat, PetscViewer viewer) 1012d71ae5a4SJacob Faibussowitsch { 101357b952d6SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 10147da1fb6eSBarry Smith PetscMPIInt rank = baij->rank; 1015d0f46423SBarry Smith PetscInt bs = mat->rmap->bs; 1016ace3abfcSBarry Smith PetscBool iascii, isdraw; 1017b0a32e0cSBarry Smith PetscViewer sviewer; 1018f3ef73ceSBarry Smith PetscViewerFormat format; 101957b952d6SSatish Balay 1020d64ed03dSBarry Smith PetscFunctionBegin; 10219566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &iascii)); 10229566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERDRAW, &isdraw)); 102332077d6dSBarry Smith if (iascii) { 10249566063dSJacob Faibussowitsch PetscCall(PetscViewerGetFormat(viewer, &format)); 1025456192e2SBarry Smith if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 10264e220ebcSLois Curfman McInnes MatInfo info; 10279566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)mat), &rank)); 10289566063dSJacob Faibussowitsch PetscCall(MatGetInfo(mat, MAT_LOCAL, &info)); 10299566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPushSynchronized(viewer)); 10309371c9d4SSatish Balay PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] Local rows %" PetscInt_FMT " nz %" PetscInt_FMT " nz alloced %" PetscInt_FMT " bs %" PetscInt_FMT " mem %g\n", rank, mat->rmap->n, (PetscInt)info.nz_used, (PetscInt)info.nz_allocated, 10319371c9d4SSatish Balay mat->rmap->bs, (double)info.memory)); 10329566063dSJacob Faibussowitsch PetscCall(MatGetInfo(baij->A, MAT_LOCAL, &info)); 10339566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] on-diagonal part: nz %" PetscInt_FMT " \n", rank, (PetscInt)info.nz_used)); 10349566063dSJacob Faibussowitsch PetscCall(MatGetInfo(baij->B, MAT_LOCAL, &info)); 10359566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] off-diagonal part: nz %" PetscInt_FMT " \n", rank, (PetscInt)info.nz_used)); 10369566063dSJacob Faibussowitsch PetscCall(PetscViewerFlush(viewer)); 10379566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPopSynchronized(viewer)); 10389566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "Information on VecScatter used in matrix-vector product: \n")); 10399566063dSJacob Faibussowitsch PetscCall(VecScatterView(baij->Mvctx, viewer)); 10403ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1041fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_INFO) { 10429566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, " block size is %" PetscInt_FMT "\n", bs)); 10433ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 104404929863SHong Zhang } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) { 10453ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 104657b952d6SSatish Balay } 104757b952d6SSatish Balay } 104857b952d6SSatish Balay 10490f5bd95cSBarry Smith if (isdraw) { 1050b0a32e0cSBarry Smith PetscDraw draw; 1051ace3abfcSBarry Smith PetscBool isnull; 10529566063dSJacob Faibussowitsch PetscCall(PetscViewerDrawGetDraw(viewer, 0, &draw)); 10539566063dSJacob Faibussowitsch PetscCall(PetscDrawIsNull(draw, &isnull)); 10543ba16761SJacob Faibussowitsch if (isnull) PetscFunctionReturn(PETSC_SUCCESS); 105557b952d6SSatish Balay } 105657b952d6SSatish Balay 10577da1fb6eSBarry Smith { 105857b952d6SSatish Balay /* assemble the entire matrix onto first processor. */ 105957b952d6SSatish Balay Mat A; 106057b952d6SSatish Balay Mat_SeqBAIJ *Aloc; 1061d0f46423SBarry Smith PetscInt M = mat->rmap->N, N = mat->cmap->N, *ai, *aj, col, i, j, k, *rvals, mbs = baij->mbs; 10623eda8832SBarry Smith MatScalar *a; 10633e219373SBarry Smith const char *matname; 106457b952d6SSatish Balay 1065f204ca49SKris Buschelman /* Here we are creating a temporary matrix, so will assume MPIBAIJ is acceptable */ 1066f204ca49SKris Buschelman /* Perhaps this should be the type of mat? */ 10679566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)mat), &A)); 1068dd400576SPatrick Sanan if (rank == 0) { 10699566063dSJacob Faibussowitsch PetscCall(MatSetSizes(A, M, N, M, N)); 1070d64ed03dSBarry Smith } else { 10719566063dSJacob Faibussowitsch PetscCall(MatSetSizes(A, 0, 0, M, N)); 107257b952d6SSatish Balay } 10739566063dSJacob Faibussowitsch PetscCall(MatSetType(A, MATMPIBAIJ)); 10749566063dSJacob Faibussowitsch PetscCall(MatMPIBAIJSetPreallocation(A, mat->rmap->bs, 0, NULL, 0, NULL)); 10759566063dSJacob Faibussowitsch PetscCall(MatSetOption(A, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_FALSE)); 107657b952d6SSatish Balay 107757b952d6SSatish Balay /* copy over the A part */ 107857b952d6SSatish Balay Aloc = (Mat_SeqBAIJ *)baij->A->data; 10799371c9d4SSatish Balay ai = Aloc->i; 10809371c9d4SSatish Balay aj = Aloc->j; 10819371c9d4SSatish Balay a = Aloc->a; 10829566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(bs, &rvals)); 108357b952d6SSatish Balay 108457b952d6SSatish Balay for (i = 0; i < mbs; i++) { 1085899cda47SBarry Smith rvals[0] = bs * (baij->rstartbs + i); 108626fbe8dcSKarl Rupp for (j = 1; j < bs; j++) rvals[j] = rvals[j - 1] + 1; 108757b952d6SSatish Balay for (j = ai[i]; j < ai[i + 1]; j++) { 1088899cda47SBarry Smith col = (baij->cstartbs + aj[j]) * bs; 108957b952d6SSatish Balay for (k = 0; k < bs; k++) { 10909566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPIBAIJ(A, bs, rvals, 1, &col, a, INSERT_VALUES)); 10919371c9d4SSatish Balay col++; 10929371c9d4SSatish Balay a += bs; 109357b952d6SSatish Balay } 109457b952d6SSatish Balay } 109557b952d6SSatish Balay } 109657b952d6SSatish Balay /* copy over the B part */ 109757b952d6SSatish Balay Aloc = (Mat_SeqBAIJ *)baij->B->data; 10989371c9d4SSatish Balay ai = Aloc->i; 10999371c9d4SSatish Balay aj = Aloc->j; 11009371c9d4SSatish Balay a = Aloc->a; 110157b952d6SSatish Balay for (i = 0; i < mbs; i++) { 1102899cda47SBarry Smith rvals[0] = bs * (baij->rstartbs + i); 110326fbe8dcSKarl Rupp for (j = 1; j < bs; j++) rvals[j] = rvals[j - 1] + 1; 110457b952d6SSatish Balay for (j = ai[i]; j < ai[i + 1]; j++) { 110557b952d6SSatish Balay col = baij->garray[aj[j]] * bs; 110657b952d6SSatish Balay for (k = 0; k < bs; k++) { 11079566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPIBAIJ(A, bs, rvals, 1, &col, a, INSERT_VALUES)); 11089371c9d4SSatish Balay col++; 11099371c9d4SSatish Balay a += bs; 111057b952d6SSatish Balay } 111157b952d6SSatish Balay } 111257b952d6SSatish Balay } 11139566063dSJacob Faibussowitsch PetscCall(PetscFree(rvals)); 11149566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(A, MAT_FINAL_ASSEMBLY)); 11159566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(A, MAT_FINAL_ASSEMBLY)); 111655843e3eSBarry Smith /* 111755843e3eSBarry Smith Everyone has to call to draw the matrix since the graphics waits are 1118b0a32e0cSBarry Smith synchronized across all processors that share the PetscDraw object 111955843e3eSBarry Smith */ 11209566063dSJacob Faibussowitsch PetscCall(PetscViewerGetSubViewer(viewer, PETSC_COMM_SELF, &sviewer)); 112123a3927dSBarry Smith if (((PetscObject)mat)->name) PetscCall(PetscObjectGetName((PetscObject)mat, &matname)); 1122dd400576SPatrick Sanan if (rank == 0) { 112323a3927dSBarry Smith if (((PetscObject)mat)->name) PetscCall(PetscObjectSetName((PetscObject)((Mat_MPIBAIJ *)(A->data))->A, matname)); 11249566063dSJacob Faibussowitsch PetscCall(MatView_SeqBAIJ(((Mat_MPIBAIJ *)(A->data))->A, sviewer)); 112557b952d6SSatish Balay } 11269566063dSJacob Faibussowitsch PetscCall(PetscViewerRestoreSubViewer(viewer, PETSC_COMM_SELF, &sviewer)); 11279566063dSJacob Faibussowitsch PetscCall(MatDestroy(&A)); 112857b952d6SSatish Balay } 11293ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 113057b952d6SSatish Balay } 113157b952d6SSatish Balay 1132618cc2edSLisandro Dalcin /* Used for both MPIBAIJ and MPISBAIJ matrices */ 1133d71ae5a4SJacob Faibussowitsch PetscErrorCode MatView_MPIBAIJ_Binary(Mat mat, PetscViewer viewer) 1134d71ae5a4SJacob Faibussowitsch { 1135b51a4376SLisandro Dalcin Mat_MPIBAIJ *aij = (Mat_MPIBAIJ *)mat->data; 1136b51a4376SLisandro Dalcin Mat_SeqBAIJ *A = (Mat_SeqBAIJ *)aij->A->data; 1137b51a4376SLisandro Dalcin Mat_SeqBAIJ *B = (Mat_SeqBAIJ *)aij->B->data; 1138b51a4376SLisandro Dalcin const PetscInt *garray = aij->garray; 113917a3732bSBarry Smith PetscInt header[4], M, N, m, rs, cs, bs, cnt, i, j, ja, jb, k, l; 114017a3732bSBarry Smith PetscInt64 nz, hnz; 1141b51a4376SLisandro Dalcin PetscInt *rowlens, *colidxs; 1142b51a4376SLisandro Dalcin PetscScalar *matvals; 114317a3732bSBarry Smith PetscMPIInt rank; 1144660746e0SBarry Smith 1145660746e0SBarry Smith PetscFunctionBegin; 11469566063dSJacob Faibussowitsch PetscCall(PetscViewerSetUp(viewer)); 1147b51a4376SLisandro Dalcin 1148b51a4376SLisandro Dalcin M = mat->rmap->N; 1149b51a4376SLisandro Dalcin N = mat->cmap->N; 1150b51a4376SLisandro Dalcin m = mat->rmap->n; 1151b51a4376SLisandro Dalcin rs = mat->rmap->rstart; 1152b51a4376SLisandro Dalcin cs = mat->cmap->rstart; 1153b51a4376SLisandro Dalcin bs = mat->rmap->bs; 1154b51a4376SLisandro Dalcin nz = bs * bs * (A->nz + B->nz); 1155b51a4376SLisandro Dalcin 1156b51a4376SLisandro Dalcin /* write matrix header */ 1157660746e0SBarry Smith header[0] = MAT_FILE_CLASSID; 11589371c9d4SSatish Balay header[1] = M; 11599371c9d4SSatish Balay header[2] = N; 116017a3732bSBarry Smith PetscCallMPI(MPI_Reduce(&nz, &hnz, 1, MPIU_INT64, MPI_SUM, 0, PetscObjectComm((PetscObject)mat))); 116117a3732bSBarry Smith PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)mat), &rank)); 116217a3732bSBarry Smith if (rank == 0) PetscCall(PetscIntCast(hnz, &header[3])); 11639566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryWrite(viewer, header, 4, PETSC_INT)); 1164660746e0SBarry Smith 1165b51a4376SLisandro Dalcin /* fill in and store row lengths */ 11669566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m, &rowlens)); 1167b51a4376SLisandro Dalcin for (cnt = 0, i = 0; i < A->mbs; i++) 11689371c9d4SSatish Balay for (j = 0; j < bs; j++) rowlens[cnt++] = bs * (A->i[i + 1] - A->i[i] + B->i[i + 1] - B->i[i]); 11699566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryWriteAll(viewer, rowlens, m, rs, M, PETSC_INT)); 11709566063dSJacob Faibussowitsch PetscCall(PetscFree(rowlens)); 1171660746e0SBarry Smith 1172b51a4376SLisandro Dalcin /* fill in and store column indices */ 11739566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nz, &colidxs)); 1174b51a4376SLisandro Dalcin for (cnt = 0, i = 0; i < A->mbs; i++) { 1175b51a4376SLisandro Dalcin for (k = 0; k < bs; k++) { 1176b51a4376SLisandro Dalcin for (jb = B->i[i]; jb < B->i[i + 1]; jb++) { 1177b51a4376SLisandro Dalcin if (garray[B->j[jb]] > cs / bs) break; 11789371c9d4SSatish Balay for (l = 0; l < bs; l++) colidxs[cnt++] = bs * garray[B->j[jb]] + l; 1179660746e0SBarry Smith } 1180b51a4376SLisandro Dalcin for (ja = A->i[i]; ja < A->i[i + 1]; ja++) 11819371c9d4SSatish Balay for (l = 0; l < bs; l++) colidxs[cnt++] = bs * A->j[ja] + l + cs; 1182b51a4376SLisandro Dalcin for (; jb < B->i[i + 1]; jb++) 11839371c9d4SSatish Balay for (l = 0; l < bs; l++) colidxs[cnt++] = bs * garray[B->j[jb]] + l; 1184660746e0SBarry Smith } 1185660746e0SBarry Smith } 118617a3732bSBarry Smith PetscCheck(cnt == nz, PETSC_COMM_SELF, PETSC_ERR_LIB, "Internal PETSc error: cnt = %" PetscInt_FMT " nz = %" PetscInt64_FMT, cnt, nz); 11879566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryWriteAll(viewer, colidxs, nz, PETSC_DECIDE, PETSC_DECIDE, PETSC_INT)); 11889566063dSJacob Faibussowitsch PetscCall(PetscFree(colidxs)); 1189660746e0SBarry Smith 1190b51a4376SLisandro Dalcin /* fill in and store nonzero values */ 11919566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nz, &matvals)); 1192b51a4376SLisandro Dalcin for (cnt = 0, i = 0; i < A->mbs; i++) { 1193b51a4376SLisandro Dalcin for (k = 0; k < bs; k++) { 1194b51a4376SLisandro Dalcin for (jb = B->i[i]; jb < B->i[i + 1]; jb++) { 1195b51a4376SLisandro Dalcin if (garray[B->j[jb]] > cs / bs) break; 11969371c9d4SSatish Balay for (l = 0; l < bs; l++) matvals[cnt++] = B->a[bs * (bs * jb + l) + k]; 1197660746e0SBarry Smith } 1198b51a4376SLisandro Dalcin for (ja = A->i[i]; ja < A->i[i + 1]; ja++) 11999371c9d4SSatish Balay for (l = 0; l < bs; l++) matvals[cnt++] = A->a[bs * (bs * ja + l) + k]; 1200b51a4376SLisandro Dalcin for (; jb < B->i[i + 1]; jb++) 12019371c9d4SSatish Balay for (l = 0; l < bs; l++) matvals[cnt++] = B->a[bs * (bs * jb + l) + k]; 1202660746e0SBarry Smith } 1203b51a4376SLisandro Dalcin } 12049566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryWriteAll(viewer, matvals, nz, PETSC_DECIDE, PETSC_DECIDE, PETSC_SCALAR)); 12059566063dSJacob Faibussowitsch PetscCall(PetscFree(matvals)); 1206660746e0SBarry Smith 1207b51a4376SLisandro Dalcin /* write block size option to the viewer's .info file */ 12089566063dSJacob Faibussowitsch PetscCall(MatView_Binary_BlockSizes(mat, viewer)); 12093ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1210660746e0SBarry Smith } 1211660746e0SBarry Smith 1212d71ae5a4SJacob Faibussowitsch PetscErrorCode MatView_MPIBAIJ(Mat mat, PetscViewer viewer) 1213d71ae5a4SJacob Faibussowitsch { 1214ace3abfcSBarry Smith PetscBool iascii, isdraw, issocket, isbinary; 121557b952d6SSatish Balay 1216d64ed03dSBarry Smith PetscFunctionBegin; 12179566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &iascii)); 12189566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERDRAW, &isdraw)); 12199566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERSOCKET, &issocket)); 12209566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary)); 1221660746e0SBarry Smith if (iascii || isdraw || issocket) { 12229566063dSJacob Faibussowitsch PetscCall(MatView_MPIBAIJ_ASCIIorDraworSocket(mat, viewer)); 12231baa6e33SBarry Smith } else if (isbinary) PetscCall(MatView_MPIBAIJ_Binary(mat, viewer)); 12243ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 122557b952d6SSatish Balay } 122657b952d6SSatish Balay 122766976f2fSJacob Faibussowitsch static PetscErrorCode MatMult_MPIBAIJ(Mat A, Vec xx, Vec yy) 1228d71ae5a4SJacob Faibussowitsch { 1229cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 1230b24ad042SBarry Smith PetscInt nt; 1231cee3aa6bSSatish Balay 1232d64ed03dSBarry Smith PetscFunctionBegin; 12339566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(xx, &nt)); 12345f80ce2aSJacob Faibussowitsch PetscCheck(nt == A->cmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Incompatible partition of A and xx"); 12359566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(yy, &nt)); 1236da81f932SPierre Jolivet PetscCheck(nt == A->rmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Incompatible partition of A and yy"); 12379566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(a->Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD)); 12389566063dSJacob Faibussowitsch PetscCall((*a->A->ops->mult)(a->A, xx, yy)); 12399566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(a->Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD)); 12409566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multadd)(a->B, a->lvec, yy, yy)); 12413ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1242cee3aa6bSSatish Balay } 1243cee3aa6bSSatish Balay 124466976f2fSJacob Faibussowitsch static PetscErrorCode MatMultAdd_MPIBAIJ(Mat A, Vec xx, Vec yy, Vec zz) 1245d71ae5a4SJacob Faibussowitsch { 1246cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 1247d64ed03dSBarry Smith 1248d64ed03dSBarry Smith PetscFunctionBegin; 12499566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(a->Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD)); 12509566063dSJacob Faibussowitsch PetscCall((*a->A->ops->multadd)(a->A, xx, yy, zz)); 12519566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(a->Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD)); 12529566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multadd)(a->B, a->lvec, zz, zz)); 12533ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1254cee3aa6bSSatish Balay } 1255cee3aa6bSSatish Balay 125666976f2fSJacob Faibussowitsch static PetscErrorCode MatMultTranspose_MPIBAIJ(Mat A, Vec xx, Vec yy) 1257d71ae5a4SJacob Faibussowitsch { 1258cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 1259cee3aa6bSSatish Balay 1260d64ed03dSBarry Smith PetscFunctionBegin; 1261cee3aa6bSSatish Balay /* do nondiagonal part */ 12629566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multtranspose)(a->B, xx, a->lvec)); 1263cee3aa6bSSatish Balay /* do local part */ 12649566063dSJacob Faibussowitsch PetscCall((*a->A->ops->multtranspose)(a->A, xx, yy)); 1265e4a140f6SJunchao Zhang /* add partial results together */ 12669566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(a->Mvctx, a->lvec, yy, ADD_VALUES, SCATTER_REVERSE)); 12679566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(a->Mvctx, a->lvec, yy, ADD_VALUES, SCATTER_REVERSE)); 12683ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1269cee3aa6bSSatish Balay } 1270cee3aa6bSSatish Balay 127166976f2fSJacob Faibussowitsch static PetscErrorCode MatMultTransposeAdd_MPIBAIJ(Mat A, Vec xx, Vec yy, Vec zz) 1272d71ae5a4SJacob Faibussowitsch { 1273cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 1274cee3aa6bSSatish Balay 1275d64ed03dSBarry Smith PetscFunctionBegin; 1276cee3aa6bSSatish Balay /* do nondiagonal part */ 12779566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multtranspose)(a->B, xx, a->lvec)); 1278cee3aa6bSSatish Balay /* do local part */ 12799566063dSJacob Faibussowitsch PetscCall((*a->A->ops->multtransposeadd)(a->A, xx, yy, zz)); 1280e4a140f6SJunchao Zhang /* add partial results together */ 12819566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(a->Mvctx, a->lvec, zz, ADD_VALUES, SCATTER_REVERSE)); 12829566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(a->Mvctx, a->lvec, zz, ADD_VALUES, SCATTER_REVERSE)); 12833ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1284cee3aa6bSSatish Balay } 1285cee3aa6bSSatish Balay 1286cee3aa6bSSatish Balay /* 1287cee3aa6bSSatish Balay This only works correctly for square matrices where the subblock A->A is the 1288cee3aa6bSSatish Balay diagonal block 1289cee3aa6bSSatish Balay */ 129066976f2fSJacob Faibussowitsch static PetscErrorCode MatGetDiagonal_MPIBAIJ(Mat A, Vec v) 1291d71ae5a4SJacob Faibussowitsch { 1292d64ed03dSBarry Smith PetscFunctionBegin; 12935f80ce2aSJacob Faibussowitsch PetscCheck(A->rmap->N == A->cmap->N, PETSC_COMM_SELF, PETSC_ERR_SUP, "Supports only square matrix where A->A is diag block"); 12949566063dSJacob Faibussowitsch PetscCall(MatGetDiagonal(((Mat_MPIBAIJ *)A->data)->A, v)); 12953ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1296cee3aa6bSSatish Balay } 1297cee3aa6bSSatish Balay 129866976f2fSJacob Faibussowitsch static PetscErrorCode MatScale_MPIBAIJ(Mat A, PetscScalar aa) 1299d71ae5a4SJacob Faibussowitsch { 1300cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 1301d64ed03dSBarry Smith 1302d64ed03dSBarry Smith PetscFunctionBegin; 13039566063dSJacob Faibussowitsch PetscCall(MatScale(a->A, aa)); 13049566063dSJacob Faibussowitsch PetscCall(MatScale(a->B, aa)); 13053ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1306cee3aa6bSSatish Balay } 1307026e39d0SSatish Balay 1308d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetRow_MPIBAIJ(Mat matin, PetscInt row, PetscInt *nz, PetscInt **idx, PetscScalar **v) 1309d71ae5a4SJacob Faibussowitsch { 1310acdf5bf4SSatish Balay Mat_MPIBAIJ *mat = (Mat_MPIBAIJ *)matin->data; 131187828ca2SBarry Smith PetscScalar *vworkA, *vworkB, **pvA, **pvB, *v_p; 1312d0f46423SBarry Smith PetscInt bs = matin->rmap->bs, bs2 = mat->bs2, i, *cworkA, *cworkB, **pcA, **pcB; 1313d0f46423SBarry Smith PetscInt nztot, nzA, nzB, lrow, brstart = matin->rmap->rstart, brend = matin->rmap->rend; 1314899cda47SBarry Smith PetscInt *cmap, *idx_p, cstart = mat->cstartbs; 1315acdf5bf4SSatish Balay 1316d64ed03dSBarry Smith PetscFunctionBegin; 13175f80ce2aSJacob Faibussowitsch PetscCheck(row >= brstart && row < brend, PETSC_COMM_SELF, PETSC_ERR_SUP, "Only local rows"); 13185f80ce2aSJacob Faibussowitsch PetscCheck(!mat->getrowactive, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Already active"); 1319acdf5bf4SSatish Balay mat->getrowactive = PETSC_TRUE; 1320acdf5bf4SSatish Balay 1321acdf5bf4SSatish Balay if (!mat->rowvalues && (idx || v)) { 1322acdf5bf4SSatish Balay /* 1323acdf5bf4SSatish Balay allocate enough space to hold information from the longest row. 1324acdf5bf4SSatish Balay */ 1325acdf5bf4SSatish Balay Mat_SeqBAIJ *Aa = (Mat_SeqBAIJ *)mat->A->data, *Ba = (Mat_SeqBAIJ *)mat->B->data; 1326b24ad042SBarry Smith PetscInt max = 1, mbs = mat->mbs, tmp; 1327bd16c2feSSatish Balay for (i = 0; i < mbs; i++) { 1328acdf5bf4SSatish Balay tmp = Aa->i[i + 1] - Aa->i[i] + Ba->i[i + 1] - Ba->i[i]; 132926fbe8dcSKarl Rupp if (max < tmp) max = tmp; 1330acdf5bf4SSatish Balay } 13319566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(max * bs2, &mat->rowvalues, max * bs2, &mat->rowindices)); 1332acdf5bf4SSatish Balay } 1333d9d09a02SSatish Balay lrow = row - brstart; 1334acdf5bf4SSatish Balay 13359371c9d4SSatish Balay pvA = &vworkA; 13369371c9d4SSatish Balay pcA = &cworkA; 13379371c9d4SSatish Balay pvB = &vworkB; 13389371c9d4SSatish Balay pcB = &cworkB; 13399371c9d4SSatish Balay if (!v) { 13409371c9d4SSatish Balay pvA = NULL; 13419371c9d4SSatish Balay pvB = NULL; 13429371c9d4SSatish Balay } 13439371c9d4SSatish Balay if (!idx) { 13449371c9d4SSatish Balay pcA = NULL; 13459371c9d4SSatish Balay if (!v) pcB = NULL; 13469371c9d4SSatish Balay } 13479566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->getrow)(mat->A, lrow, &nzA, pcA, pvA)); 13489566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->getrow)(mat->B, lrow, &nzB, pcB, pvB)); 1349acdf5bf4SSatish Balay nztot = nzA + nzB; 1350acdf5bf4SSatish Balay 1351acdf5bf4SSatish Balay cmap = mat->garray; 1352acdf5bf4SSatish Balay if (v || idx) { 1353acdf5bf4SSatish Balay if (nztot) { 1354acdf5bf4SSatish Balay /* Sort by increasing column numbers, assuming A and B already sorted */ 1355b24ad042SBarry Smith PetscInt imark = -1; 1356acdf5bf4SSatish Balay if (v) { 1357acdf5bf4SSatish Balay *v = v_p = mat->rowvalues; 1358acdf5bf4SSatish Balay for (i = 0; i < nzB; i++) { 1359d9d09a02SSatish Balay if (cmap[cworkB[i] / bs] < cstart) v_p[i] = vworkB[i]; 1360acdf5bf4SSatish Balay else break; 1361acdf5bf4SSatish Balay } 1362acdf5bf4SSatish Balay imark = i; 1363acdf5bf4SSatish Balay for (i = 0; i < nzA; i++) v_p[imark + i] = vworkA[i]; 1364acdf5bf4SSatish Balay for (i = imark; i < nzB; i++) v_p[nzA + i] = vworkB[i]; 1365acdf5bf4SSatish Balay } 1366acdf5bf4SSatish Balay if (idx) { 1367acdf5bf4SSatish Balay *idx = idx_p = mat->rowindices; 1368acdf5bf4SSatish Balay if (imark > -1) { 1369ad540459SPierre Jolivet for (i = 0; i < imark; i++) idx_p[i] = cmap[cworkB[i] / bs] * bs + cworkB[i] % bs; 1370acdf5bf4SSatish Balay } else { 1371acdf5bf4SSatish Balay for (i = 0; i < nzB; i++) { 137226fbe8dcSKarl Rupp if (cmap[cworkB[i] / bs] < cstart) idx_p[i] = cmap[cworkB[i] / bs] * bs + cworkB[i] % bs; 1373acdf5bf4SSatish Balay else break; 1374acdf5bf4SSatish Balay } 1375acdf5bf4SSatish Balay imark = i; 1376acdf5bf4SSatish Balay } 1377d9d09a02SSatish Balay for (i = 0; i < nzA; i++) idx_p[imark + i] = cstart * bs + cworkA[i]; 1378d9d09a02SSatish Balay for (i = imark; i < nzB; i++) idx_p[nzA + i] = cmap[cworkB[i] / bs] * bs + cworkB[i] % bs; 1379acdf5bf4SSatish Balay } 1380d64ed03dSBarry Smith } else { 1381f4259b30SLisandro Dalcin if (idx) *idx = NULL; 1382f4259b30SLisandro Dalcin if (v) *v = NULL; 1383d212a18eSSatish Balay } 1384acdf5bf4SSatish Balay } 1385acdf5bf4SSatish Balay *nz = nztot; 13869566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->restorerow)(mat->A, lrow, &nzA, pcA, pvA)); 13879566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->restorerow)(mat->B, lrow, &nzB, pcB, pvB)); 13883ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1389acdf5bf4SSatish Balay } 1390acdf5bf4SSatish Balay 1391d71ae5a4SJacob Faibussowitsch PetscErrorCode MatRestoreRow_MPIBAIJ(Mat mat, PetscInt row, PetscInt *nz, PetscInt **idx, PetscScalar **v) 1392d71ae5a4SJacob Faibussowitsch { 1393acdf5bf4SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 1394d64ed03dSBarry Smith 1395d64ed03dSBarry Smith PetscFunctionBegin; 13965f80ce2aSJacob Faibussowitsch PetscCheck(baij->getrowactive, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "MatGetRow not called"); 1397acdf5bf4SSatish Balay baij->getrowactive = PETSC_FALSE; 13983ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1399acdf5bf4SSatish Balay } 1400acdf5bf4SSatish Balay 140166976f2fSJacob Faibussowitsch static PetscErrorCode MatZeroEntries_MPIBAIJ(Mat A) 1402d71ae5a4SJacob Faibussowitsch { 140358667388SSatish Balay Mat_MPIBAIJ *l = (Mat_MPIBAIJ *)A->data; 1404d64ed03dSBarry Smith 1405d64ed03dSBarry Smith PetscFunctionBegin; 14069566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(l->A)); 14079566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(l->B)); 14083ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 140958667388SSatish Balay } 14100ac07820SSatish Balay 141166976f2fSJacob Faibussowitsch static PetscErrorCode MatGetInfo_MPIBAIJ(Mat matin, MatInfoType flag, MatInfo *info) 1412d71ae5a4SJacob Faibussowitsch { 14134e220ebcSLois Curfman McInnes Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)matin->data; 14144e220ebcSLois Curfman McInnes Mat A = a->A, B = a->B; 14153966268fSBarry Smith PetscLogDouble isend[5], irecv[5]; 14160ac07820SSatish Balay 1417d64ed03dSBarry Smith PetscFunctionBegin; 1418d0f46423SBarry Smith info->block_size = (PetscReal)matin->rmap->bs; 141926fbe8dcSKarl Rupp 14209566063dSJacob Faibussowitsch PetscCall(MatGetInfo(A, MAT_LOCAL, info)); 142126fbe8dcSKarl Rupp 14229371c9d4SSatish Balay isend[0] = info->nz_used; 14239371c9d4SSatish Balay isend[1] = info->nz_allocated; 14249371c9d4SSatish Balay isend[2] = info->nz_unneeded; 14259371c9d4SSatish Balay isend[3] = info->memory; 14269371c9d4SSatish Balay isend[4] = info->mallocs; 142726fbe8dcSKarl Rupp 14289566063dSJacob Faibussowitsch PetscCall(MatGetInfo(B, MAT_LOCAL, info)); 142926fbe8dcSKarl Rupp 14309371c9d4SSatish Balay isend[0] += info->nz_used; 14319371c9d4SSatish Balay isend[1] += info->nz_allocated; 14329371c9d4SSatish Balay isend[2] += info->nz_unneeded; 14339371c9d4SSatish Balay isend[3] += info->memory; 14349371c9d4SSatish Balay isend[4] += info->mallocs; 143526fbe8dcSKarl Rupp 14360ac07820SSatish Balay if (flag == MAT_LOCAL) { 14374e220ebcSLois Curfman McInnes info->nz_used = isend[0]; 14384e220ebcSLois Curfman McInnes info->nz_allocated = isend[1]; 14394e220ebcSLois Curfman McInnes info->nz_unneeded = isend[2]; 14404e220ebcSLois Curfman McInnes info->memory = isend[3]; 14414e220ebcSLois Curfman McInnes info->mallocs = isend[4]; 14420ac07820SSatish Balay } else if (flag == MAT_GLOBAL_MAX) { 14431c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(isend, irecv, 5, MPIU_PETSCLOGDOUBLE, MPI_MAX, PetscObjectComm((PetscObject)matin))); 144426fbe8dcSKarl Rupp 14454e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 14464e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 14474e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 14484e220ebcSLois Curfman McInnes info->memory = irecv[3]; 14494e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 14500ac07820SSatish Balay } else if (flag == MAT_GLOBAL_SUM) { 14511c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(isend, irecv, 5, MPIU_PETSCLOGDOUBLE, MPI_SUM, PetscObjectComm((PetscObject)matin))); 145226fbe8dcSKarl Rupp 14534e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 14544e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 14554e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 14564e220ebcSLois Curfman McInnes info->memory = irecv[3]; 14574e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 145898921bdaSJacob Faibussowitsch } else SETERRQ(PetscObjectComm((PetscObject)matin), PETSC_ERR_ARG_WRONG, "Unknown MatInfoType argument %d", (int)flag); 14594e220ebcSLois Curfman McInnes info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */ 14604e220ebcSLois Curfman McInnes info->fill_ratio_needed = 0; 14614e220ebcSLois Curfman McInnes info->factor_mallocs = 0; 14623ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 14630ac07820SSatish Balay } 14640ac07820SSatish Balay 146566976f2fSJacob Faibussowitsch static PetscErrorCode MatSetOption_MPIBAIJ(Mat A, MatOption op, PetscBool flg) 1466d71ae5a4SJacob Faibussowitsch { 146758667388SSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 146858667388SSatish Balay 1469d64ed03dSBarry Smith PetscFunctionBegin; 147012c028f9SKris Buschelman switch (op) { 1471512a5fc5SBarry Smith case MAT_NEW_NONZERO_LOCATIONS: 147212c028f9SKris Buschelman case MAT_NEW_NONZERO_ALLOCATION_ERR: 147328b2fa4aSMatthew Knepley case MAT_UNUSED_NONZERO_LOCATION_ERR: 1474a9817697SBarry Smith case MAT_KEEP_NONZERO_PATTERN: 147512c028f9SKris Buschelman case MAT_NEW_NONZERO_LOCATION_ERR: 147643674050SBarry Smith MatCheckPreallocated(A, 1); 14779566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->A, op, flg)); 14789566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->B, op, flg)); 147912c028f9SKris Buschelman break; 148012c028f9SKris Buschelman case MAT_ROW_ORIENTED: 148143674050SBarry Smith MatCheckPreallocated(A, 1); 14824e0d8c25SBarry Smith a->roworiented = flg; 148326fbe8dcSKarl Rupp 14849566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->A, op, flg)); 14859566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->B, op, flg)); 148612c028f9SKris Buschelman break; 14878c78258cSHong Zhang case MAT_FORCE_DIAGONAL_ENTRIES: 1488d71ae5a4SJacob Faibussowitsch case MAT_SORTED_FULL: 1489d71ae5a4SJacob Faibussowitsch PetscCall(PetscInfo(A, "Option %s ignored\n", MatOptions[op])); 1490d71ae5a4SJacob Faibussowitsch break; 1491d71ae5a4SJacob Faibussowitsch case MAT_IGNORE_OFF_PROC_ENTRIES: 1492d71ae5a4SJacob Faibussowitsch a->donotstash = flg; 1493d71ae5a4SJacob Faibussowitsch break; 149412c028f9SKris Buschelman case MAT_USE_HASH_TABLE: 14954e0d8c25SBarry Smith a->ht_flag = flg; 1496abf3b562SBarry Smith a->ht_fact = 1.39; 149712c028f9SKris Buschelman break; 149877e54ba9SKris Buschelman case MAT_SYMMETRIC: 149977e54ba9SKris Buschelman case MAT_STRUCTURALLY_SYMMETRIC: 15002188ac68SBarry Smith case MAT_HERMITIAN: 1501c10200c1SHong Zhang case MAT_SUBMAT_SINGLEIS: 15022188ac68SBarry Smith case MAT_SYMMETRY_ETERNAL: 1503b94d7dedSBarry Smith case MAT_STRUCTURAL_SYMMETRY_ETERNAL: 1504b94d7dedSBarry Smith case MAT_SPD_ETERNAL: 1505b94d7dedSBarry Smith /* if the diagonal matrix is square it inherits some of the properties above */ 150677e54ba9SKris Buschelman break; 1507d71ae5a4SJacob Faibussowitsch default: 1508d71ae5a4SJacob Faibussowitsch SETERRQ(PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "unknown option %d", op); 1509d64ed03dSBarry Smith } 15103ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 151158667388SSatish Balay } 151258667388SSatish Balay 151366976f2fSJacob Faibussowitsch static PetscErrorCode MatTranspose_MPIBAIJ(Mat A, MatReuse reuse, Mat *matout) 1514d71ae5a4SJacob Faibussowitsch { 15150ac07820SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)A->data; 15160ac07820SSatish Balay Mat_SeqBAIJ *Aloc; 15170ac07820SSatish Balay Mat B; 1518d0f46423SBarry Smith PetscInt M = A->rmap->N, N = A->cmap->N, *ai, *aj, i, *rvals, j, k, col; 1519d0f46423SBarry Smith PetscInt bs = A->rmap->bs, mbs = baij->mbs; 15203eda8832SBarry Smith MatScalar *a; 15210ac07820SSatish Balay 1522d64ed03dSBarry Smith PetscFunctionBegin; 15237fb60732SBarry Smith if (reuse == MAT_REUSE_MATRIX) PetscCall(MatTransposeCheckNonzeroState_Private(A, *matout)); 1524cf37664fSBarry Smith if (reuse == MAT_INITIAL_MATRIX || reuse == MAT_INPLACE_MATRIX) { 15259566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)A), &B)); 15269566063dSJacob Faibussowitsch PetscCall(MatSetSizes(B, A->cmap->n, A->rmap->n, N, M)); 15279566063dSJacob Faibussowitsch PetscCall(MatSetType(B, ((PetscObject)A)->type_name)); 15282e72b8d9SBarry Smith /* Do not know preallocation information, but must set block size */ 15299566063dSJacob Faibussowitsch PetscCall(MatMPIBAIJSetPreallocation(B, A->rmap->bs, PETSC_DECIDE, NULL, PETSC_DECIDE, NULL)); 1530fc4dec0aSBarry Smith } else { 1531fc4dec0aSBarry Smith B = *matout; 1532fc4dec0aSBarry Smith } 15330ac07820SSatish Balay 15340ac07820SSatish Balay /* copy over the A part */ 15350ac07820SSatish Balay Aloc = (Mat_SeqBAIJ *)baij->A->data; 15369371c9d4SSatish Balay ai = Aloc->i; 15379371c9d4SSatish Balay aj = Aloc->j; 15389371c9d4SSatish Balay a = Aloc->a; 15399566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(bs, &rvals)); 15400ac07820SSatish Balay 15410ac07820SSatish Balay for (i = 0; i < mbs; i++) { 1542899cda47SBarry Smith rvals[0] = bs * (baij->rstartbs + i); 154326fbe8dcSKarl Rupp for (j = 1; j < bs; j++) rvals[j] = rvals[j - 1] + 1; 15440ac07820SSatish Balay for (j = ai[i]; j < ai[i + 1]; j++) { 1545899cda47SBarry Smith col = (baij->cstartbs + aj[j]) * bs; 15460ac07820SSatish Balay for (k = 0; k < bs; k++) { 15479566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPIBAIJ(B, 1, &col, bs, rvals, a, INSERT_VALUES)); 154826fbe8dcSKarl Rupp 15499371c9d4SSatish Balay col++; 15509371c9d4SSatish Balay a += bs; 15510ac07820SSatish Balay } 15520ac07820SSatish Balay } 15530ac07820SSatish Balay } 15540ac07820SSatish Balay /* copy over the B part */ 15550ac07820SSatish Balay Aloc = (Mat_SeqBAIJ *)baij->B->data; 15569371c9d4SSatish Balay ai = Aloc->i; 15579371c9d4SSatish Balay aj = Aloc->j; 15589371c9d4SSatish Balay a = Aloc->a; 15590ac07820SSatish Balay for (i = 0; i < mbs; i++) { 1560899cda47SBarry Smith rvals[0] = bs * (baij->rstartbs + i); 156126fbe8dcSKarl Rupp for (j = 1; j < bs; j++) rvals[j] = rvals[j - 1] + 1; 15620ac07820SSatish Balay for (j = ai[i]; j < ai[i + 1]; j++) { 15630ac07820SSatish Balay col = baij->garray[aj[j]] * bs; 15640ac07820SSatish Balay for (k = 0; k < bs; k++) { 15659566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPIBAIJ(B, 1, &col, bs, rvals, a, INSERT_VALUES)); 156626fbe8dcSKarl Rupp col++; 156726fbe8dcSKarl Rupp a += bs; 15680ac07820SSatish Balay } 15690ac07820SSatish Balay } 15700ac07820SSatish Balay } 15719566063dSJacob Faibussowitsch PetscCall(PetscFree(rvals)); 15729566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY)); 15739566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY)); 15740ac07820SSatish Balay 1575cf37664fSBarry Smith if (reuse == MAT_INITIAL_MATRIX || reuse == MAT_REUSE_MATRIX) *matout = B; 157648a46eb9SPierre Jolivet else PetscCall(MatHeaderMerge(A, &B)); 15773ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 15780ac07820SSatish Balay } 15790e95ebc0SSatish Balay 158066976f2fSJacob Faibussowitsch static PetscErrorCode MatDiagonalScale_MPIBAIJ(Mat mat, Vec ll, Vec rr) 1581d71ae5a4SJacob Faibussowitsch { 158236c4a09eSSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 158336c4a09eSSatish Balay Mat a = baij->A, b = baij->B; 1584b24ad042SBarry Smith PetscInt s1, s2, s3; 15850e95ebc0SSatish Balay 1586d64ed03dSBarry Smith PetscFunctionBegin; 15879566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(mat, &s2, &s3)); 158836c4a09eSSatish Balay if (rr) { 15899566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(rr, &s1)); 15905f80ce2aSJacob Faibussowitsch PetscCheck(s1 == s3, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "right vector non-conforming local size"); 159136c4a09eSSatish Balay /* Overlap communication with computation. */ 15929566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(baij->Mvctx, rr, baij->lvec, INSERT_VALUES, SCATTER_FORWARD)); 159336c4a09eSSatish Balay } 15940e95ebc0SSatish Balay if (ll) { 15959566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(ll, &s1)); 15965f80ce2aSJacob Faibussowitsch PetscCheck(s1 == s2, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "left vector non-conforming local size"); 1597dbbe0bcdSBarry Smith PetscUseTypeMethod(b, diagonalscale, ll, NULL); 15980e95ebc0SSatish Balay } 159936c4a09eSSatish Balay /* scale the diagonal block */ 1600dbbe0bcdSBarry Smith PetscUseTypeMethod(a, diagonalscale, ll, rr); 160136c4a09eSSatish Balay 160236c4a09eSSatish Balay if (rr) { 160336c4a09eSSatish Balay /* Do a scatter end and then right scale the off-diagonal block */ 16049566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(baij->Mvctx, rr, baij->lvec, INSERT_VALUES, SCATTER_FORWARD)); 1605dbbe0bcdSBarry Smith PetscUseTypeMethod(b, diagonalscale, NULL, baij->lvec); 160636c4a09eSSatish Balay } 16073ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 16080e95ebc0SSatish Balay } 16090e95ebc0SSatish Balay 161066976f2fSJacob Faibussowitsch static PetscErrorCode MatZeroRows_MPIBAIJ(Mat A, PetscInt N, const PetscInt rows[], PetscScalar diag, Vec x, Vec b) 1611d71ae5a4SJacob Faibussowitsch { 16120ac07820SSatish Balay Mat_MPIBAIJ *l = (Mat_MPIBAIJ *)A->data; 161365a92638SMatthew G. Knepley PetscInt *lrows; 16146e520ac8SStefano Zampini PetscInt r, len; 161594342113SStefano Zampini PetscBool cong; 16160ac07820SSatish Balay 1617d64ed03dSBarry Smith PetscFunctionBegin; 16186e520ac8SStefano Zampini /* get locally owned rows */ 16199566063dSJacob Faibussowitsch PetscCall(MatZeroRowsMapLocal_Private(A, N, rows, &len, &lrows)); 162097b48c8fSBarry Smith /* fix right hand side if needed */ 162197b48c8fSBarry Smith if (x && b) { 162265a92638SMatthew G. Knepley const PetscScalar *xx; 162365a92638SMatthew G. Knepley PetscScalar *bb; 162465a92638SMatthew G. Knepley 16259566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(x, &xx)); 16269566063dSJacob Faibussowitsch PetscCall(VecGetArray(b, &bb)); 162765a92638SMatthew G. Knepley for (r = 0; r < len; ++r) bb[lrows[r]] = diag * xx[lrows[r]]; 16289566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(x, &xx)); 16299566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(b, &bb)); 163097b48c8fSBarry Smith } 163197b48c8fSBarry Smith 16320ac07820SSatish Balay /* actually zap the local rows */ 163372dacd9aSBarry Smith /* 163472dacd9aSBarry Smith Zero the required rows. If the "diagonal block" of the matrix 1635a8c7a070SBarry Smith is square and the user wishes to set the diagonal we use separate 163672dacd9aSBarry Smith code so that MatSetValues() is not called for each diagonal allocating 163772dacd9aSBarry Smith new memory, thus calling lots of mallocs and slowing things down. 163872dacd9aSBarry Smith 163972dacd9aSBarry Smith */ 16409c957beeSSatish Balay /* must zero l->B before l->A because the (diag) case below may put values into l->B*/ 16419566063dSJacob Faibussowitsch PetscCall(MatZeroRows_SeqBAIJ(l->B, len, lrows, 0.0, NULL, NULL)); 16429566063dSJacob Faibussowitsch PetscCall(MatHasCongruentLayouts(A, &cong)); 164394342113SStefano Zampini if ((diag != 0.0) && cong) { 16449566063dSJacob Faibussowitsch PetscCall(MatZeroRows_SeqBAIJ(l->A, len, lrows, diag, NULL, NULL)); 1645f4df32b1SMatthew Knepley } else if (diag != 0.0) { 16469566063dSJacob Faibussowitsch PetscCall(MatZeroRows_SeqBAIJ(l->A, len, lrows, 0.0, NULL, NULL)); 16475f80ce2aSJacob Faibussowitsch PetscCheck(!((Mat_SeqBAIJ *)l->A->data)->nonew, PETSC_COMM_SELF, PETSC_ERR_SUP, "MatZeroRows() on rectangular matrices cannot be used with the Mat options \n\ 1648512a5fc5SBarry Smith MAT_NEW_NONZERO_LOCATIONS,MAT_NEW_NONZERO_LOCATION_ERR,MAT_NEW_NONZERO_ALLOCATION_ERR"); 164965a92638SMatthew G. Knepley for (r = 0; r < len; ++r) { 165065a92638SMatthew G. Knepley const PetscInt row = lrows[r] + A->rmap->rstart; 16519566063dSJacob Faibussowitsch PetscCall(MatSetValues(A, 1, &row, 1, &row, &diag, INSERT_VALUES)); 1652a07cd24cSSatish Balay } 16539566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(A, MAT_FINAL_ASSEMBLY)); 16549566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(A, MAT_FINAL_ASSEMBLY)); 16559c957beeSSatish Balay } else { 16569566063dSJacob Faibussowitsch PetscCall(MatZeroRows_SeqBAIJ(l->A, len, lrows, 0.0, NULL, NULL)); 1657a07cd24cSSatish Balay } 16589566063dSJacob Faibussowitsch PetscCall(PetscFree(lrows)); 16594f9cfa9eSBarry Smith 16604f9cfa9eSBarry Smith /* only change matrix nonzero state if pattern was allowed to be changed */ 16614f9cfa9eSBarry Smith if (!((Mat_SeqBAIJ *)(l->A->data))->keepnonzeropattern) { 1662e56f5c9eSBarry Smith PetscObjectState state = l->A->nonzerostate + l->B->nonzerostate; 16631c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&state, &A->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)A))); 1664e56f5c9eSBarry Smith } 16653ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 16660ac07820SSatish Balay } 166772dacd9aSBarry Smith 166866976f2fSJacob Faibussowitsch static PetscErrorCode MatZeroRowsColumns_MPIBAIJ(Mat A, PetscInt N, const PetscInt rows[], PetscScalar diag, Vec x, Vec b) 1669d71ae5a4SJacob Faibussowitsch { 16706f0a72daSMatthew G. Knepley Mat_MPIBAIJ *l = (Mat_MPIBAIJ *)A->data; 1671131c27b5Sprj- PetscMPIInt n = A->rmap->n, p = 0; 1672131c27b5Sprj- PetscInt i, j, k, r, len = 0, row, col, count; 16736f0a72daSMatthew G. Knepley PetscInt *lrows, *owners = A->rmap->range; 16746f0a72daSMatthew G. Knepley PetscSFNode *rrows; 16756f0a72daSMatthew G. Knepley PetscSF sf; 16766f0a72daSMatthew G. Knepley const PetscScalar *xx; 16776f0a72daSMatthew G. Knepley PetscScalar *bb, *mask; 16786f0a72daSMatthew G. Knepley Vec xmask, lmask; 16796f0a72daSMatthew G. Knepley Mat_SeqBAIJ *baij = (Mat_SeqBAIJ *)l->B->data; 16806f0a72daSMatthew G. Knepley PetscInt bs = A->rmap->bs, bs2 = baij->bs2; 16816f0a72daSMatthew G. Knepley PetscScalar *aa; 16826f0a72daSMatthew G. Knepley 16836f0a72daSMatthew G. Knepley PetscFunctionBegin; 16846f0a72daSMatthew G. Knepley /* Create SF where leaves are input rows and roots are owned rows */ 16859566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(n, &lrows)); 16866f0a72daSMatthew G. Knepley for (r = 0; r < n; ++r) lrows[r] = -1; 16879566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(N, &rrows)); 16886f0a72daSMatthew G. Knepley for (r = 0; r < N; ++r) { 16896f0a72daSMatthew G. Knepley const PetscInt idx = rows[r]; 16905f80ce2aSJacob Faibussowitsch PetscCheck(idx >= 0 && A->rmap->N > idx, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row %" PetscInt_FMT " out of range [0,%" PetscInt_FMT ")", idx, A->rmap->N); 16915ba17502SJed Brown if (idx < owners[p] || owners[p + 1] <= idx) { /* short-circuit the search if the last p owns this row too */ 16929566063dSJacob Faibussowitsch PetscCall(PetscLayoutFindOwner(A->rmap, idx, &p)); 16935ba17502SJed Brown } 16946f0a72daSMatthew G. Knepley rrows[r].rank = p; 16956f0a72daSMatthew G. Knepley rrows[r].index = rows[r] - owners[p]; 16966f0a72daSMatthew G. Knepley } 16979566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)A), &sf)); 16989566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(sf, n, N, NULL, PETSC_OWN_POINTER, rrows, PETSC_OWN_POINTER)); 16996f0a72daSMatthew G. Knepley /* Collect flags for rows to be zeroed */ 17009566063dSJacob Faibussowitsch PetscCall(PetscSFReduceBegin(sf, MPIU_INT, (PetscInt *)rows, lrows, MPI_LOR)); 17019566063dSJacob Faibussowitsch PetscCall(PetscSFReduceEnd(sf, MPIU_INT, (PetscInt *)rows, lrows, MPI_LOR)); 17029566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&sf)); 17036f0a72daSMatthew G. Knepley /* Compress and put in row numbers */ 17049371c9d4SSatish Balay for (r = 0; r < n; ++r) 17059371c9d4SSatish Balay if (lrows[r] >= 0) lrows[len++] = r; 17066f0a72daSMatthew G. Knepley /* zero diagonal part of matrix */ 17079566063dSJacob Faibussowitsch PetscCall(MatZeroRowsColumns(l->A, len, lrows, diag, x, b)); 17084cf0e950SBarry Smith /* handle off-diagonal part of matrix */ 17099566063dSJacob Faibussowitsch PetscCall(MatCreateVecs(A, &xmask, NULL)); 17109566063dSJacob Faibussowitsch PetscCall(VecDuplicate(l->lvec, &lmask)); 17119566063dSJacob Faibussowitsch PetscCall(VecGetArray(xmask, &bb)); 17126f0a72daSMatthew G. Knepley for (i = 0; i < len; i++) bb[lrows[i]] = 1; 17139566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(xmask, &bb)); 17149566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(l->Mvctx, xmask, lmask, ADD_VALUES, SCATTER_FORWARD)); 17159566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(l->Mvctx, xmask, lmask, ADD_VALUES, SCATTER_FORWARD)); 17169566063dSJacob Faibussowitsch PetscCall(VecDestroy(&xmask)); 17176f0a72daSMatthew G. Knepley if (x) { 17189566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(l->Mvctx, x, l->lvec, INSERT_VALUES, SCATTER_FORWARD)); 17199566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(l->Mvctx, x, l->lvec, INSERT_VALUES, SCATTER_FORWARD)); 17209566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(l->lvec, &xx)); 17219566063dSJacob Faibussowitsch PetscCall(VecGetArray(b, &bb)); 17226f0a72daSMatthew G. Knepley } 17239566063dSJacob Faibussowitsch PetscCall(VecGetArray(lmask, &mask)); 17244cf0e950SBarry Smith /* remove zeroed rows of off-diagonal matrix */ 17256f0a72daSMatthew G. Knepley for (i = 0; i < len; ++i) { 17266f0a72daSMatthew G. Knepley row = lrows[i]; 17276f0a72daSMatthew G. Knepley count = (baij->i[row / bs + 1] - baij->i[row / bs]) * bs; 17286f0a72daSMatthew G. Knepley aa = ((MatScalar *)(baij->a)) + baij->i[row / bs] * bs2 + (row % bs); 17296f0a72daSMatthew G. Knepley for (k = 0; k < count; ++k) { 17306f0a72daSMatthew G. Knepley aa[0] = 0.0; 17316f0a72daSMatthew G. Knepley aa += bs; 17326f0a72daSMatthew G. Knepley } 17336f0a72daSMatthew G. Knepley } 17346f0a72daSMatthew G. Knepley /* loop over all elements of off process part of matrix zeroing removed columns*/ 17356f0a72daSMatthew G. Knepley for (i = 0; i < l->B->rmap->N; ++i) { 17366f0a72daSMatthew G. Knepley row = i / bs; 17376f0a72daSMatthew G. Knepley for (j = baij->i[row]; j < baij->i[row + 1]; ++j) { 17386f0a72daSMatthew G. Knepley for (k = 0; k < bs; ++k) { 17396f0a72daSMatthew G. Knepley col = bs * baij->j[j] + k; 17406f0a72daSMatthew G. Knepley if (PetscAbsScalar(mask[col])) { 17416f0a72daSMatthew G. Knepley aa = ((MatScalar *)(baij->a)) + j * bs2 + (i % bs) + bs * k; 174289ae1891SBarry Smith if (x) bb[i] -= aa[0] * xx[col]; 17436f0a72daSMatthew G. Knepley aa[0] = 0.0; 17446f0a72daSMatthew G. Knepley } 17456f0a72daSMatthew G. Knepley } 17466f0a72daSMatthew G. Knepley } 17476f0a72daSMatthew G. Knepley } 17486f0a72daSMatthew G. Knepley if (x) { 17499566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(b, &bb)); 17509566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(l->lvec, &xx)); 17516f0a72daSMatthew G. Knepley } 17529566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(lmask, &mask)); 17539566063dSJacob Faibussowitsch PetscCall(VecDestroy(&lmask)); 17549566063dSJacob Faibussowitsch PetscCall(PetscFree(lrows)); 17554f9cfa9eSBarry Smith 17564f9cfa9eSBarry Smith /* only change matrix nonzero state if pattern was allowed to be changed */ 17574f9cfa9eSBarry Smith if (!((Mat_SeqBAIJ *)(l->A->data))->keepnonzeropattern) { 17584f9cfa9eSBarry Smith PetscObjectState state = l->A->nonzerostate + l->B->nonzerostate; 17591c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&state, &A->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)A))); 17604f9cfa9eSBarry Smith } 17613ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 17626f0a72daSMatthew G. Knepley } 17636f0a72daSMatthew G. Knepley 176466976f2fSJacob Faibussowitsch static PetscErrorCode MatSetUnfactored_MPIBAIJ(Mat A) 1765d71ae5a4SJacob Faibussowitsch { 1766bb5a7306SBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 1767d64ed03dSBarry Smith 1768d64ed03dSBarry Smith PetscFunctionBegin; 17699566063dSJacob Faibussowitsch PetscCall(MatSetUnfactored(a->A)); 17703ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1771bb5a7306SBarry Smith } 1772bb5a7306SBarry Smith 17736849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIBAIJ(Mat, MatDuplicateOption, Mat *); 17740ac07820SSatish Balay 177566976f2fSJacob Faibussowitsch static PetscErrorCode MatEqual_MPIBAIJ(Mat A, Mat B, PetscBool *flag) 1776d71ae5a4SJacob Faibussowitsch { 17777fc3c18eSBarry Smith Mat_MPIBAIJ *matB = (Mat_MPIBAIJ *)B->data, *matA = (Mat_MPIBAIJ *)A->data; 17787fc3c18eSBarry Smith Mat a, b, c, d; 1779ace3abfcSBarry Smith PetscBool flg; 17807fc3c18eSBarry Smith 17817fc3c18eSBarry Smith PetscFunctionBegin; 17829371c9d4SSatish Balay a = matA->A; 17839371c9d4SSatish Balay b = matA->B; 17849371c9d4SSatish Balay c = matB->A; 17859371c9d4SSatish Balay d = matB->B; 17867fc3c18eSBarry Smith 17879566063dSJacob Faibussowitsch PetscCall(MatEqual(a, c, &flg)); 178848a46eb9SPierre Jolivet if (flg) PetscCall(MatEqual(b, d, &flg)); 17891c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&flg, flag, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)A))); 17903ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 17917fc3c18eSBarry Smith } 17927fc3c18eSBarry Smith 179366976f2fSJacob Faibussowitsch static PetscErrorCode MatCopy_MPIBAIJ(Mat A, Mat B, MatStructure str) 1794d71ae5a4SJacob Faibussowitsch { 17953c896bc6SHong Zhang Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 17963c896bc6SHong Zhang Mat_MPIBAIJ *b = (Mat_MPIBAIJ *)B->data; 17973c896bc6SHong Zhang 17983c896bc6SHong Zhang PetscFunctionBegin; 17993c896bc6SHong Zhang /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */ 18003c896bc6SHong Zhang if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) { 18019566063dSJacob Faibussowitsch PetscCall(MatCopy_Basic(A, B, str)); 18023c896bc6SHong Zhang } else { 18039566063dSJacob Faibussowitsch PetscCall(MatCopy(a->A, b->A, str)); 18049566063dSJacob Faibussowitsch PetscCall(MatCopy(a->B, b->B, str)); 18053c896bc6SHong Zhang } 18069566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)B)); 18073ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 18083c896bc6SHong Zhang } 1809273d9f13SBarry Smith 1810d71ae5a4SJacob Faibussowitsch PetscErrorCode MatAXPYGetPreallocation_MPIBAIJ(Mat Y, const PetscInt *yltog, Mat X, const PetscInt *xltog, PetscInt *nnz) 1811d71ae5a4SJacob Faibussowitsch { 1812001ddc4fSHong Zhang PetscInt bs = Y->rmap->bs, m = Y->rmap->N / bs; 18134de5dceeSHong Zhang Mat_SeqBAIJ *x = (Mat_SeqBAIJ *)X->data; 18144de5dceeSHong Zhang Mat_SeqBAIJ *y = (Mat_SeqBAIJ *)Y->data; 18154de5dceeSHong Zhang 18164de5dceeSHong Zhang PetscFunctionBegin; 18179566063dSJacob Faibussowitsch PetscCall(MatAXPYGetPreallocation_MPIX_private(m, x->i, x->j, xltog, y->i, y->j, yltog, nnz)); 18183ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 18194de5dceeSHong Zhang } 18204de5dceeSHong Zhang 182166976f2fSJacob Faibussowitsch static PetscErrorCode MatAXPY_MPIBAIJ(Mat Y, PetscScalar a, Mat X, MatStructure str) 1822d71ae5a4SJacob Faibussowitsch { 18234fe895cdSHong Zhang Mat_MPIBAIJ *xx = (Mat_MPIBAIJ *)X->data, *yy = (Mat_MPIBAIJ *)Y->data; 18244fe895cdSHong Zhang PetscBLASInt bnz, one = 1; 18254fe895cdSHong Zhang Mat_SeqBAIJ *x, *y; 1826b31f67cfSBarry Smith PetscInt bs2 = Y->rmap->bs * Y->rmap->bs; 18274fe895cdSHong Zhang 18284fe895cdSHong Zhang PetscFunctionBegin; 18294fe895cdSHong Zhang if (str == SAME_NONZERO_PATTERN) { 18304fe895cdSHong Zhang PetscScalar alpha = a; 18314fe895cdSHong Zhang x = (Mat_SeqBAIJ *)xx->A->data; 18324fe895cdSHong Zhang y = (Mat_SeqBAIJ *)yy->A->data; 18339566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(x->nz * bs2, &bnz)); 1834792fecdfSBarry Smith PetscCallBLAS("BLASaxpy", BLASaxpy_(&bnz, &alpha, x->a, &one, y->a, &one)); 18354fe895cdSHong Zhang x = (Mat_SeqBAIJ *)xx->B->data; 18364fe895cdSHong Zhang y = (Mat_SeqBAIJ *)yy->B->data; 18379566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(x->nz * bs2, &bnz)); 1838792fecdfSBarry Smith PetscCallBLAS("BLASaxpy", BLASaxpy_(&bnz, &alpha, x->a, &one, y->a, &one)); 18399566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)Y)); 1840ab784542SHong Zhang } else if (str == SUBSET_NONZERO_PATTERN) { /* nonzeros of X is a subset of Y's */ 18419566063dSJacob Faibussowitsch PetscCall(MatAXPY_Basic(Y, a, X, str)); 18424fe895cdSHong Zhang } else { 18434de5dceeSHong Zhang Mat B; 18444de5dceeSHong Zhang PetscInt *nnz_d, *nnz_o, bs = Y->rmap->bs; 18459566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(yy->A->rmap->N, &nnz_d)); 18469566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(yy->B->rmap->N, &nnz_o)); 18479566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)Y), &B)); 18489566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)B, ((PetscObject)Y)->name)); 18499566063dSJacob Faibussowitsch PetscCall(MatSetSizes(B, Y->rmap->n, Y->cmap->n, Y->rmap->N, Y->cmap->N)); 18509566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizesFromMats(B, Y, Y)); 18519566063dSJacob Faibussowitsch PetscCall(MatSetType(B, MATMPIBAIJ)); 18529566063dSJacob Faibussowitsch PetscCall(MatAXPYGetPreallocation_SeqBAIJ(yy->A, xx->A, nnz_d)); 18539566063dSJacob Faibussowitsch PetscCall(MatAXPYGetPreallocation_MPIBAIJ(yy->B, yy->garray, xx->B, xx->garray, nnz_o)); 18549566063dSJacob Faibussowitsch PetscCall(MatMPIBAIJSetPreallocation(B, bs, 0, nnz_d, 0, nnz_o)); 18554de5dceeSHong Zhang /* MatAXPY_BasicWithPreallocation() for BAIJ matrix is much slower than AIJ, even for bs=1 ! */ 18569566063dSJacob Faibussowitsch PetscCall(MatAXPY_BasicWithPreallocation(B, Y, a, X, str)); 18579566063dSJacob Faibussowitsch PetscCall(MatHeaderMerge(Y, &B)); 18589566063dSJacob Faibussowitsch PetscCall(PetscFree(nnz_d)); 18599566063dSJacob Faibussowitsch PetscCall(PetscFree(nnz_o)); 18604fe895cdSHong Zhang } 18613ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 18624fe895cdSHong Zhang } 18634fe895cdSHong Zhang 186466976f2fSJacob Faibussowitsch static PetscErrorCode MatConjugate_MPIBAIJ(Mat mat) 1865d71ae5a4SJacob Faibussowitsch { 18665f80ce2aSJacob Faibussowitsch PetscFunctionBegin; 18675f80ce2aSJacob Faibussowitsch if (PetscDefined(USE_COMPLEX)) { 18682726fb6dSPierre Jolivet Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)mat->data; 18692726fb6dSPierre Jolivet 18709566063dSJacob Faibussowitsch PetscCall(MatConjugate_SeqBAIJ(a->A)); 18719566063dSJacob Faibussowitsch PetscCall(MatConjugate_SeqBAIJ(a->B)); 18725f80ce2aSJacob Faibussowitsch } 18733ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 18742726fb6dSPierre Jolivet } 18752726fb6dSPierre Jolivet 187666976f2fSJacob Faibussowitsch static PetscErrorCode MatRealPart_MPIBAIJ(Mat A) 1877d71ae5a4SJacob Faibussowitsch { 187899cafbc1SBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 187999cafbc1SBarry Smith 188099cafbc1SBarry Smith PetscFunctionBegin; 18819566063dSJacob Faibussowitsch PetscCall(MatRealPart(a->A)); 18829566063dSJacob Faibussowitsch PetscCall(MatRealPart(a->B)); 18833ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 188499cafbc1SBarry Smith } 188599cafbc1SBarry Smith 188666976f2fSJacob Faibussowitsch static PetscErrorCode MatImaginaryPart_MPIBAIJ(Mat A) 1887d71ae5a4SJacob Faibussowitsch { 188899cafbc1SBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 188999cafbc1SBarry Smith 189099cafbc1SBarry Smith PetscFunctionBegin; 18919566063dSJacob Faibussowitsch PetscCall(MatImaginaryPart(a->A)); 18929566063dSJacob Faibussowitsch PetscCall(MatImaginaryPart(a->B)); 18933ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 189499cafbc1SBarry Smith } 189599cafbc1SBarry Smith 189666976f2fSJacob Faibussowitsch static PetscErrorCode MatCreateSubMatrix_MPIBAIJ(Mat mat, IS isrow, IS iscol, MatReuse call, Mat *newmat) 1897d71ae5a4SJacob Faibussowitsch { 18984aa3045dSJed Brown IS iscol_local; 18994aa3045dSJed Brown PetscInt csize; 19004aa3045dSJed Brown 19014aa3045dSJed Brown PetscFunctionBegin; 19029566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol, &csize)); 1903b79d0421SJed Brown if (call == MAT_REUSE_MATRIX) { 19049566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*newmat, "ISAllGather", (PetscObject *)&iscol_local)); 19055f80ce2aSJacob Faibussowitsch PetscCheck(iscol_local, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Submatrix passed in was not used before, cannot reuse"); 1906b79d0421SJed Brown } else { 19079566063dSJacob Faibussowitsch PetscCall(ISAllGather(iscol, &iscol_local)); 1908b79d0421SJed Brown } 1909fdfbdca6SPierre Jolivet PetscCall(MatCreateSubMatrix_MPIBAIJ_Private(mat, isrow, iscol_local, csize, call, newmat, PETSC_FALSE)); 1910b79d0421SJed Brown if (call == MAT_INITIAL_MATRIX) { 19119566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)*newmat, "ISAllGather", (PetscObject)iscol_local)); 19129566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscol_local)); 1913b79d0421SJed Brown } 19143ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 19154aa3045dSJed Brown } 191617df9f7cSHong Zhang 191782094794SBarry Smith /* 191882094794SBarry Smith Not great since it makes two copies of the submatrix, first an SeqBAIJ 191982094794SBarry Smith in local and then by concatenating the local matrices the end result. 19207dae84e0SHong Zhang Writing it directly would be much like MatCreateSubMatrices_MPIBAIJ(). 19218f46ffcaSHong Zhang This routine is used for BAIJ and SBAIJ matrices (unfortunate dependency). 192282094794SBarry Smith */ 1923fdfbdca6SPierre Jolivet PetscErrorCode MatCreateSubMatrix_MPIBAIJ_Private(Mat mat, IS isrow, IS iscol, PetscInt csize, MatReuse call, Mat *newmat, PetscBool sym) 1924d71ae5a4SJacob Faibussowitsch { 192582094794SBarry Smith PetscMPIInt rank, size; 192682094794SBarry Smith PetscInt i, m, n, rstart, row, rend, nz, *cwork, j, bs; 1927c9ffca76SHong Zhang PetscInt *ii, *jj, nlocal, *dlens, *olens, dlen, olen, jend, mglobal; 192829dcf524SDmitry Karpeev Mat M, Mreuse; 192982094794SBarry Smith MatScalar *vwork, *aa; 1930ce94432eSBarry Smith MPI_Comm comm; 193129dcf524SDmitry Karpeev IS isrow_new, iscol_new; 193282094794SBarry Smith Mat_SeqBAIJ *aij; 193382094794SBarry Smith 193482094794SBarry Smith PetscFunctionBegin; 19359566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)mat, &comm)); 19369566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 19379566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 193829dcf524SDmitry Karpeev /* The compression and expansion should be avoided. Doesn't point 193929dcf524SDmitry Karpeev out errors, might change the indices, hence buggey */ 19409566063dSJacob Faibussowitsch PetscCall(ISCompressIndicesGeneral(mat->rmap->N, mat->rmap->n, mat->rmap->bs, 1, &isrow, &isrow_new)); 1941864bd19bSPierre Jolivet if (isrow == iscol) { 1942864bd19bSPierre Jolivet iscol_new = isrow_new; 1943864bd19bSPierre Jolivet PetscCall(PetscObjectReference((PetscObject)iscol_new)); 1944864bd19bSPierre Jolivet } else PetscCall(ISCompressIndicesGeneral(mat->cmap->N, mat->cmap->n, mat->cmap->bs, 1, &iscol, &iscol_new)); 194582094794SBarry Smith 194682094794SBarry Smith if (call == MAT_REUSE_MATRIX) { 19479566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*newmat, "SubMatrix", (PetscObject *)&Mreuse)); 19485f80ce2aSJacob Faibussowitsch PetscCheck(Mreuse, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Submatrix passed in was not used before, cannot reuse"); 1949fdfbdca6SPierre Jolivet PetscCall(MatCreateSubMatrices_MPIBAIJ_local(mat, 1, &isrow_new, &iscol_new, MAT_REUSE_MATRIX, &Mreuse, sym)); 195082094794SBarry Smith } else { 1951fdfbdca6SPierre Jolivet PetscCall(MatCreateSubMatrices_MPIBAIJ_local(mat, 1, &isrow_new, &iscol_new, MAT_INITIAL_MATRIX, &Mreuse, sym)); 195282094794SBarry Smith } 19539566063dSJacob Faibussowitsch PetscCall(ISDestroy(&isrow_new)); 19549566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscol_new)); 195582094794SBarry Smith /* 195682094794SBarry Smith m - number of local rows 195782094794SBarry Smith n - number of columns (same on all processors) 195882094794SBarry Smith rstart - first row in new global matrix generated 195982094794SBarry Smith */ 19609566063dSJacob Faibussowitsch PetscCall(MatGetBlockSize(mat, &bs)); 19619566063dSJacob Faibussowitsch PetscCall(MatGetSize(Mreuse, &m, &n)); 196282094794SBarry Smith m = m / bs; 196382094794SBarry Smith n = n / bs; 196482094794SBarry Smith 196582094794SBarry Smith if (call == MAT_INITIAL_MATRIX) { 196682094794SBarry Smith aij = (Mat_SeqBAIJ *)(Mreuse)->data; 196782094794SBarry Smith ii = aij->i; 196882094794SBarry Smith jj = aij->j; 196982094794SBarry Smith 197082094794SBarry Smith /* 197182094794SBarry Smith Determine the number of non-zeros in the diagonal and off-diagonal 197282094794SBarry Smith portions of the matrix in order to do correct preallocation 197382094794SBarry Smith */ 197482094794SBarry Smith 197582094794SBarry Smith /* first get start and end of "diagonal" columns */ 197682094794SBarry Smith if (csize == PETSC_DECIDE) { 19779566063dSJacob Faibussowitsch PetscCall(ISGetSize(isrow, &mglobal)); 197882094794SBarry Smith if (mglobal == n * bs) { /* square matrix */ 197982094794SBarry Smith nlocal = m; 198082094794SBarry Smith } else { 198182094794SBarry Smith nlocal = n / size + ((n % size) > rank); 198282094794SBarry Smith } 198382094794SBarry Smith } else { 198482094794SBarry Smith nlocal = csize / bs; 198582094794SBarry Smith } 19869566063dSJacob Faibussowitsch PetscCallMPI(MPI_Scan(&nlocal, &rend, 1, MPIU_INT, MPI_SUM, comm)); 198782094794SBarry Smith rstart = rend - nlocal; 1988aed4548fSBarry Smith PetscCheck(rank != size - 1 || rend == n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Local column sizes %" PetscInt_FMT " do not add up to total number of columns %" PetscInt_FMT, rend, n); 198982094794SBarry Smith 199082094794SBarry Smith /* next, compute all the lengths */ 19919566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(m + 1, &dlens, m + 1, &olens)); 199282094794SBarry Smith for (i = 0; i < m; i++) { 199382094794SBarry Smith jend = ii[i + 1] - ii[i]; 199482094794SBarry Smith olen = 0; 199582094794SBarry Smith dlen = 0; 199682094794SBarry Smith for (j = 0; j < jend; j++) { 199782094794SBarry Smith if (*jj < rstart || *jj >= rend) olen++; 199882094794SBarry Smith else dlen++; 199982094794SBarry Smith jj++; 200082094794SBarry Smith } 200182094794SBarry Smith olens[i] = olen; 200282094794SBarry Smith dlens[i] = dlen; 200382094794SBarry Smith } 20049566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, &M)); 20059566063dSJacob Faibussowitsch PetscCall(MatSetSizes(M, bs * m, bs * nlocal, PETSC_DECIDE, bs * n)); 2006fdfbdca6SPierre Jolivet PetscCall(MatSetType(M, sym ? ((PetscObject)mat)->type_name : MATMPIBAIJ)); 20079566063dSJacob Faibussowitsch PetscCall(MatMPIBAIJSetPreallocation(M, bs, 0, dlens, 0, olens)); 20089566063dSJacob Faibussowitsch PetscCall(MatMPISBAIJSetPreallocation(M, bs, 0, dlens, 0, olens)); 20099566063dSJacob Faibussowitsch PetscCall(PetscFree2(dlens, olens)); 201082094794SBarry Smith } else { 201182094794SBarry Smith PetscInt ml, nl; 201282094794SBarry Smith 201382094794SBarry Smith M = *newmat; 20149566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(M, &ml, &nl)); 20155f80ce2aSJacob Faibussowitsch PetscCheck(ml == m, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Previous matrix must be same size/layout as request"); 20169566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(M)); 201782094794SBarry Smith /* 201882094794SBarry Smith The next two lines are needed so we may call MatSetValues_MPIAIJ() below directly, 201982094794SBarry Smith rather than the slower MatSetValues(). 202082094794SBarry Smith */ 202182094794SBarry Smith M->was_assembled = PETSC_TRUE; 202282094794SBarry Smith M->assembled = PETSC_FALSE; 202382094794SBarry Smith } 20249566063dSJacob Faibussowitsch PetscCall(MatSetOption(M, MAT_ROW_ORIENTED, PETSC_FALSE)); 20259566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(M, &rstart, &rend)); 202682094794SBarry Smith aij = (Mat_SeqBAIJ *)(Mreuse)->data; 202782094794SBarry Smith ii = aij->i; 202882094794SBarry Smith jj = aij->j; 202982094794SBarry Smith aa = aij->a; 203082094794SBarry Smith for (i = 0; i < m; i++) { 203182094794SBarry Smith row = rstart / bs + i; 203282094794SBarry Smith nz = ii[i + 1] - ii[i]; 20339371c9d4SSatish Balay cwork = jj; 2034*8e3a54c0SPierre Jolivet jj = PetscSafePointerPlusOffset(jj, nz); 20359371c9d4SSatish Balay vwork = aa; 2036*8e3a54c0SPierre Jolivet aa = PetscSafePointerPlusOffset(aa, nz * bs * bs); 20379566063dSJacob Faibussowitsch PetscCall(MatSetValuesBlocked_MPIBAIJ(M, 1, &row, nz, cwork, vwork, INSERT_VALUES)); 203882094794SBarry Smith } 203982094794SBarry Smith 20409566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(M, MAT_FINAL_ASSEMBLY)); 20419566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(M, MAT_FINAL_ASSEMBLY)); 204282094794SBarry Smith *newmat = M; 204382094794SBarry Smith 204482094794SBarry Smith /* save submatrix used in processor for next request */ 204582094794SBarry Smith if (call == MAT_INITIAL_MATRIX) { 20469566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)M, "SubMatrix", (PetscObject)Mreuse)); 20479566063dSJacob Faibussowitsch PetscCall(PetscObjectDereference((PetscObject)Mreuse)); 204882094794SBarry Smith } 20493ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 205082094794SBarry Smith } 205182094794SBarry Smith 205266976f2fSJacob Faibussowitsch static PetscErrorCode MatPermute_MPIBAIJ(Mat A, IS rowp, IS colp, Mat *B) 2053d71ae5a4SJacob Faibussowitsch { 205482094794SBarry Smith MPI_Comm comm, pcomm; 2055a0a83eb5SRémi Lacroix PetscInt clocal_size, nrows; 205682094794SBarry Smith const PetscInt *rows; 2057dbf0e21dSBarry Smith PetscMPIInt size; 2058a0a83eb5SRémi Lacroix IS crowp, lcolp; 205982094794SBarry Smith 206082094794SBarry Smith PetscFunctionBegin; 20619566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)A, &comm)); 206282094794SBarry Smith /* make a collective version of 'rowp' */ 20639566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)rowp, &pcomm)); 206482094794SBarry Smith if (pcomm == comm) { 206582094794SBarry Smith crowp = rowp; 206682094794SBarry Smith } else { 20679566063dSJacob Faibussowitsch PetscCall(ISGetSize(rowp, &nrows)); 20689566063dSJacob Faibussowitsch PetscCall(ISGetIndices(rowp, &rows)); 20699566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(comm, nrows, rows, PETSC_COPY_VALUES, &crowp)); 20709566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(rowp, &rows)); 207182094794SBarry Smith } 20729566063dSJacob Faibussowitsch PetscCall(ISSetPermutation(crowp)); 2073a0a83eb5SRémi Lacroix /* make a local version of 'colp' */ 20749566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)colp, &pcomm)); 20759566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(pcomm, &size)); 2076dbf0e21dSBarry Smith if (size == 1) { 207782094794SBarry Smith lcolp = colp; 207882094794SBarry Smith } else { 20799566063dSJacob Faibussowitsch PetscCall(ISAllGather(colp, &lcolp)); 208082094794SBarry Smith } 20819566063dSJacob Faibussowitsch PetscCall(ISSetPermutation(lcolp)); 208275f6568bSJed Brown /* now we just get the submatrix */ 20839566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(A, NULL, &clocal_size)); 2084fdfbdca6SPierre Jolivet PetscCall(MatCreateSubMatrix_MPIBAIJ_Private(A, crowp, lcolp, clocal_size, MAT_INITIAL_MATRIX, B, PETSC_FALSE)); 2085a0a83eb5SRémi Lacroix /* clean up */ 208648a46eb9SPierre Jolivet if (pcomm != comm) PetscCall(ISDestroy(&crowp)); 208748a46eb9SPierre Jolivet if (size > 1) PetscCall(ISDestroy(&lcolp)); 20883ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 208982094794SBarry Smith } 209082094794SBarry Smith 209166976f2fSJacob Faibussowitsch static PetscErrorCode MatGetGhosts_MPIBAIJ(Mat mat, PetscInt *nghosts, const PetscInt *ghosts[]) 2092d71ae5a4SJacob Faibussowitsch { 20938c7482ecSBarry Smith Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 20948c7482ecSBarry Smith Mat_SeqBAIJ *B = (Mat_SeqBAIJ *)baij->B->data; 20958c7482ecSBarry Smith 20968c7482ecSBarry Smith PetscFunctionBegin; 209726fbe8dcSKarl Rupp if (nghosts) *nghosts = B->nbs; 209826fbe8dcSKarl Rupp if (ghosts) *ghosts = baij->garray; 20993ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 21008c7482ecSBarry Smith } 21018c7482ecSBarry Smith 210266976f2fSJacob Faibussowitsch static PetscErrorCode MatGetSeqNonzeroStructure_MPIBAIJ(Mat A, Mat *newmat) 2103d71ae5a4SJacob Faibussowitsch { 2104f6d58c54SBarry Smith Mat B; 2105f6d58c54SBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 2106f6d58c54SBarry Smith Mat_SeqBAIJ *ad = (Mat_SeqBAIJ *)a->A->data, *bd = (Mat_SeqBAIJ *)a->B->data; 2107f6d58c54SBarry Smith Mat_SeqAIJ *b; 2108f4259b30SLisandro Dalcin PetscMPIInt size, rank, *recvcounts = NULL, *displs = NULL; 2109f6d58c54SBarry Smith PetscInt sendcount, i, *rstarts = A->rmap->range, n, cnt, j, bs = A->rmap->bs; 2110f6d58c54SBarry Smith PetscInt m, *garray = a->garray, *lens, *jsendbuf, *a_jsendbuf, *b_jsendbuf; 2111f6d58c54SBarry Smith 2112f6d58c54SBarry Smith PetscFunctionBegin; 21139566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)A), &size)); 21149566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)A), &rank)); 2115f6d58c54SBarry Smith 21162ef1f0ffSBarry Smith /* Tell every processor the number of nonzeros per row */ 21179566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(A->rmap->N / bs, &lens)); 2118ad540459SPierre Jolivet for (i = A->rmap->rstart / bs; i < A->rmap->rend / bs; i++) lens[i] = ad->i[i - A->rmap->rstart / bs + 1] - ad->i[i - A->rmap->rstart / bs] + bd->i[i - A->rmap->rstart / bs + 1] - bd->i[i - A->rmap->rstart / bs]; 21199566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(2 * size, &recvcounts)); 2120f6d58c54SBarry Smith displs = recvcounts + size; 2121f6d58c54SBarry Smith for (i = 0; i < size; i++) { 2122f6d58c54SBarry Smith recvcounts[i] = A->rmap->range[i + 1] / bs - A->rmap->range[i] / bs; 2123f6d58c54SBarry Smith displs[i] = A->rmap->range[i] / bs; 2124f6d58c54SBarry Smith } 21259566063dSJacob Faibussowitsch PetscCallMPI(MPI_Allgatherv(MPI_IN_PLACE, 0, MPI_DATATYPE_NULL, lens, recvcounts, displs, MPIU_INT, PetscObjectComm((PetscObject)A))); 21262ef1f0ffSBarry Smith /* Create the sequential matrix of the same type as the local block diagonal */ 21279566063dSJacob Faibussowitsch PetscCall(MatCreate(PETSC_COMM_SELF, &B)); 21289566063dSJacob Faibussowitsch PetscCall(MatSetSizes(B, A->rmap->N / bs, A->cmap->N / bs, PETSC_DETERMINE, PETSC_DETERMINE)); 21299566063dSJacob Faibussowitsch PetscCall(MatSetType(B, MATSEQAIJ)); 21309566063dSJacob Faibussowitsch PetscCall(MatSeqAIJSetPreallocation(B, 0, lens)); 2131f6d58c54SBarry Smith b = (Mat_SeqAIJ *)B->data; 2132f6d58c54SBarry Smith 21332ef1f0ffSBarry Smith /* Copy my part of matrix column indices over */ 2134f6d58c54SBarry Smith sendcount = ad->nz + bd->nz; 2135f6d58c54SBarry Smith jsendbuf = b->j + b->i[rstarts[rank] / bs]; 2136f6d58c54SBarry Smith a_jsendbuf = ad->j; 2137f6d58c54SBarry Smith b_jsendbuf = bd->j; 2138f6d58c54SBarry Smith n = A->rmap->rend / bs - A->rmap->rstart / bs; 2139f6d58c54SBarry Smith cnt = 0; 2140f6d58c54SBarry Smith for (i = 0; i < n; i++) { 2141f6d58c54SBarry Smith /* put in lower diagonal portion */ 2142f6d58c54SBarry Smith m = bd->i[i + 1] - bd->i[i]; 2143f6d58c54SBarry Smith while (m > 0) { 2144f6d58c54SBarry Smith /* is it above diagonal (in bd (compressed) numbering) */ 2145f6d58c54SBarry Smith if (garray[*b_jsendbuf] > A->rmap->rstart / bs + i) break; 2146f6d58c54SBarry Smith jsendbuf[cnt++] = garray[*b_jsendbuf++]; 2147f6d58c54SBarry Smith m--; 2148f6d58c54SBarry Smith } 2149f6d58c54SBarry Smith 2150f6d58c54SBarry Smith /* put in diagonal portion */ 2151ad540459SPierre Jolivet for (j = ad->i[i]; j < ad->i[i + 1]; j++) jsendbuf[cnt++] = A->rmap->rstart / bs + *a_jsendbuf++; 2152f6d58c54SBarry Smith 2153f6d58c54SBarry Smith /* put in upper diagonal portion */ 2154ad540459SPierre Jolivet while (m-- > 0) jsendbuf[cnt++] = garray[*b_jsendbuf++]; 2155f6d58c54SBarry Smith } 21565f80ce2aSJacob Faibussowitsch PetscCheck(cnt == sendcount, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Corrupted PETSc matrix: nz given %" PetscInt_FMT " actual nz %" PetscInt_FMT, sendcount, cnt); 2157f6d58c54SBarry Smith 21582ef1f0ffSBarry Smith /* Gather all column indices to all processors */ 2159f6d58c54SBarry Smith for (i = 0; i < size; i++) { 2160f6d58c54SBarry Smith recvcounts[i] = 0; 2161ad540459SPierre Jolivet for (j = A->rmap->range[i] / bs; j < A->rmap->range[i + 1] / bs; j++) recvcounts[i] += lens[j]; 2162f6d58c54SBarry Smith } 2163f6d58c54SBarry Smith displs[0] = 0; 2164ad540459SPierre Jolivet for (i = 1; i < size; i++) displs[i] = displs[i - 1] + recvcounts[i - 1]; 21659566063dSJacob Faibussowitsch PetscCallMPI(MPI_Allgatherv(MPI_IN_PLACE, 0, MPI_DATATYPE_NULL, b->j, recvcounts, displs, MPIU_INT, PetscObjectComm((PetscObject)A))); 21662ef1f0ffSBarry Smith /* Assemble the matrix into useable form (note numerical values not yet set) */ 2167f6d58c54SBarry Smith /* set the b->ilen (length of each row) values */ 21689566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(b->ilen, lens, A->rmap->N / bs)); 2169f6d58c54SBarry Smith /* set the b->i indices */ 2170f6d58c54SBarry Smith b->i[0] = 0; 2171ad540459SPierre Jolivet for (i = 1; i <= A->rmap->N / bs; i++) b->i[i] = b->i[i - 1] + lens[i - 1]; 21729566063dSJacob Faibussowitsch PetscCall(PetscFree(lens)); 21739566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY)); 21749566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY)); 21759566063dSJacob Faibussowitsch PetscCall(PetscFree(recvcounts)); 2176f6d58c54SBarry Smith 2177b94d7dedSBarry Smith PetscCall(MatPropagateSymmetryOptions(A, B)); 2178f6d58c54SBarry Smith *newmat = B; 21793ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2180f6d58c54SBarry Smith } 2181f6d58c54SBarry Smith 218266976f2fSJacob Faibussowitsch static PetscErrorCode MatSOR_MPIBAIJ(Mat matin, Vec bb, PetscReal omega, MatSORType flag, PetscReal fshift, PetscInt its, PetscInt lits, Vec xx) 2183d71ae5a4SJacob Faibussowitsch { 2184b1a666ecSBarry Smith Mat_MPIBAIJ *mat = (Mat_MPIBAIJ *)matin->data; 2185f4259b30SLisandro Dalcin Vec bb1 = NULL; 2186b1a666ecSBarry Smith 2187b1a666ecSBarry Smith PetscFunctionBegin; 2188b1a666ecSBarry Smith if (flag == SOR_APPLY_UPPER) { 21899566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx)); 21903ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2191b1a666ecSBarry Smith } 2192b1a666ecSBarry Smith 219348a46eb9SPierre Jolivet if (its > 1 || ~flag & SOR_ZERO_INITIAL_GUESS) PetscCall(VecDuplicate(bb, &bb1)); 21944e980039SJed Brown 2195b1a666ecSBarry Smith if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP) { 2196b1a666ecSBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 21979566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx)); 2198b1a666ecSBarry Smith its--; 2199b1a666ecSBarry Smith } 2200b1a666ecSBarry Smith 2201b1a666ecSBarry Smith while (its--) { 22029566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 22039566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 2204b1a666ecSBarry Smith 2205b1a666ecSBarry Smith /* update rhs: bb1 = bb - B*x */ 22069566063dSJacob Faibussowitsch PetscCall(VecScale(mat->lvec, -1.0)); 22079566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->multadd)(mat->B, mat->lvec, bb, bb1)); 2208b1a666ecSBarry Smith 2209b1a666ecSBarry Smith /* local sweep */ 22109566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, SOR_SYMMETRIC_SWEEP, fshift, lits, 1, xx)); 2211b1a666ecSBarry Smith } 2212b1a666ecSBarry Smith } else if (flag & SOR_LOCAL_FORWARD_SWEEP) { 2213b1a666ecSBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 22149566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx)); 2215b1a666ecSBarry Smith its--; 2216b1a666ecSBarry Smith } 2217b1a666ecSBarry Smith while (its--) { 22189566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 22199566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 2220b1a666ecSBarry Smith 2221b1a666ecSBarry Smith /* update rhs: bb1 = bb - B*x */ 22229566063dSJacob Faibussowitsch PetscCall(VecScale(mat->lvec, -1.0)); 22239566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->multadd)(mat->B, mat->lvec, bb, bb1)); 2224b1a666ecSBarry Smith 2225b1a666ecSBarry Smith /* local sweep */ 22269566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, SOR_FORWARD_SWEEP, fshift, lits, 1, xx)); 2227b1a666ecSBarry Smith } 2228b1a666ecSBarry Smith } else if (flag & SOR_LOCAL_BACKWARD_SWEEP) { 2229b1a666ecSBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 22309566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx)); 2231b1a666ecSBarry Smith its--; 2232b1a666ecSBarry Smith } 2233b1a666ecSBarry Smith while (its--) { 22349566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 22359566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 2236b1a666ecSBarry Smith 2237b1a666ecSBarry Smith /* update rhs: bb1 = bb - B*x */ 22389566063dSJacob Faibussowitsch PetscCall(VecScale(mat->lvec, -1.0)); 22399566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->multadd)(mat->B, mat->lvec, bb, bb1)); 2240b1a666ecSBarry Smith 2241b1a666ecSBarry Smith /* local sweep */ 22429566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, SOR_BACKWARD_SWEEP, fshift, lits, 1, xx)); 2243b1a666ecSBarry Smith } 2244ce94432eSBarry Smith } else SETERRQ(PetscObjectComm((PetscObject)matin), PETSC_ERR_SUP, "Parallel version of SOR requested not supported"); 2245b1a666ecSBarry Smith 22469566063dSJacob Faibussowitsch PetscCall(VecDestroy(&bb1)); 22473ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2248b1a666ecSBarry Smith } 2249b1a666ecSBarry Smith 225066976f2fSJacob Faibussowitsch static PetscErrorCode MatGetColumnReductions_MPIBAIJ(Mat A, PetscInt type, PetscReal *reductions) 2251d71ae5a4SJacob Faibussowitsch { 225247f7623dSRémi Lacroix Mat_MPIBAIJ *aij = (Mat_MPIBAIJ *)A->data; 2253a873a8cdSSam Reynolds PetscInt m, N, i, *garray = aij->garray; 225447f7623dSRémi Lacroix PetscInt ib, jb, bs = A->rmap->bs; 225547f7623dSRémi Lacroix Mat_SeqBAIJ *a_aij = (Mat_SeqBAIJ *)aij->A->data; 225647f7623dSRémi Lacroix MatScalar *a_val = a_aij->a; 225747f7623dSRémi Lacroix Mat_SeqBAIJ *b_aij = (Mat_SeqBAIJ *)aij->B->data; 225847f7623dSRémi Lacroix MatScalar *b_val = b_aij->a; 225947f7623dSRémi Lacroix PetscReal *work; 226047f7623dSRémi Lacroix 226147f7623dSRémi Lacroix PetscFunctionBegin; 22629566063dSJacob Faibussowitsch PetscCall(MatGetSize(A, &m, &N)); 22639566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(N, &work)); 2264857cbf51SRichard Tran Mills if (type == NORM_2) { 226547f7623dSRémi Lacroix for (i = a_aij->i[0]; i < a_aij->i[aij->A->rmap->n / bs]; i++) { 226647f7623dSRémi Lacroix for (jb = 0; jb < bs; jb++) { 226747f7623dSRémi Lacroix for (ib = 0; ib < bs; ib++) { 226847f7623dSRémi Lacroix work[A->cmap->rstart + a_aij->j[i] * bs + jb] += PetscAbsScalar(*a_val * *a_val); 226947f7623dSRémi Lacroix a_val++; 227047f7623dSRémi Lacroix } 227147f7623dSRémi Lacroix } 227247f7623dSRémi Lacroix } 227347f7623dSRémi Lacroix for (i = b_aij->i[0]; i < b_aij->i[aij->B->rmap->n / bs]; i++) { 227447f7623dSRémi Lacroix for (jb = 0; jb < bs; jb++) { 227547f7623dSRémi Lacroix for (ib = 0; ib < bs; ib++) { 227647f7623dSRémi Lacroix work[garray[b_aij->j[i]] * bs + jb] += PetscAbsScalar(*b_val * *b_val); 227747f7623dSRémi Lacroix b_val++; 227847f7623dSRémi Lacroix } 227947f7623dSRémi Lacroix } 228047f7623dSRémi Lacroix } 2281857cbf51SRichard Tran Mills } else if (type == NORM_1) { 228247f7623dSRémi Lacroix for (i = a_aij->i[0]; i < a_aij->i[aij->A->rmap->n / bs]; i++) { 228347f7623dSRémi Lacroix for (jb = 0; jb < bs; jb++) { 228447f7623dSRémi Lacroix for (ib = 0; ib < bs; ib++) { 228547f7623dSRémi Lacroix work[A->cmap->rstart + a_aij->j[i] * bs + jb] += PetscAbsScalar(*a_val); 228647f7623dSRémi Lacroix a_val++; 228747f7623dSRémi Lacroix } 228847f7623dSRémi Lacroix } 228947f7623dSRémi Lacroix } 229047f7623dSRémi Lacroix for (i = b_aij->i[0]; i < b_aij->i[aij->B->rmap->n / bs]; i++) { 229147f7623dSRémi Lacroix for (jb = 0; jb < bs; jb++) { 229247f7623dSRémi Lacroix for (ib = 0; ib < bs; ib++) { 229347f7623dSRémi Lacroix work[garray[b_aij->j[i]] * bs + jb] += PetscAbsScalar(*b_val); 229447f7623dSRémi Lacroix b_val++; 229547f7623dSRémi Lacroix } 229647f7623dSRémi Lacroix } 229747f7623dSRémi Lacroix } 2298857cbf51SRichard Tran Mills } else if (type == NORM_INFINITY) { 229947f7623dSRémi Lacroix for (i = a_aij->i[0]; i < a_aij->i[aij->A->rmap->n / bs]; i++) { 230047f7623dSRémi Lacroix for (jb = 0; jb < bs; jb++) { 230147f7623dSRémi Lacroix for (ib = 0; ib < bs; ib++) { 230247f7623dSRémi Lacroix int col = A->cmap->rstart + a_aij->j[i] * bs + jb; 230347f7623dSRémi Lacroix work[col] = PetscMax(PetscAbsScalar(*a_val), work[col]); 230447f7623dSRémi Lacroix a_val++; 230547f7623dSRémi Lacroix } 230647f7623dSRémi Lacroix } 230747f7623dSRémi Lacroix } 230847f7623dSRémi Lacroix for (i = b_aij->i[0]; i < b_aij->i[aij->B->rmap->n / bs]; i++) { 230947f7623dSRémi Lacroix for (jb = 0; jb < bs; jb++) { 231047f7623dSRémi Lacroix for (ib = 0; ib < bs; ib++) { 231147f7623dSRémi Lacroix int col = garray[b_aij->j[i]] * bs + jb; 231247f7623dSRémi Lacroix work[col] = PetscMax(PetscAbsScalar(*b_val), work[col]); 231347f7623dSRémi Lacroix b_val++; 231447f7623dSRémi Lacroix } 231547f7623dSRémi Lacroix } 231647f7623dSRémi Lacroix } 2317857cbf51SRichard Tran Mills } else if (type == REDUCTION_SUM_REALPART || type == REDUCTION_MEAN_REALPART) { 2318a873a8cdSSam Reynolds for (i = a_aij->i[0]; i < a_aij->i[aij->A->rmap->n / bs]; i++) { 2319a873a8cdSSam Reynolds for (jb = 0; jb < bs; jb++) { 2320a873a8cdSSam Reynolds for (ib = 0; ib < bs; ib++) { 2321857cbf51SRichard Tran Mills work[A->cmap->rstart + a_aij->j[i] * bs + jb] += PetscRealPart(*a_val); 2322a873a8cdSSam Reynolds a_val++; 2323a873a8cdSSam Reynolds } 2324a873a8cdSSam Reynolds } 2325a873a8cdSSam Reynolds } 2326a873a8cdSSam Reynolds for (i = b_aij->i[0]; i < b_aij->i[aij->B->rmap->n / bs]; i++) { 2327a873a8cdSSam Reynolds for (jb = 0; jb < bs; jb++) { 2328a873a8cdSSam Reynolds for (ib = 0; ib < bs; ib++) { 2329857cbf51SRichard Tran Mills work[garray[b_aij->j[i]] * bs + jb] += PetscRealPart(*b_val); 2330a873a8cdSSam Reynolds b_val++; 2331a873a8cdSSam Reynolds } 2332a873a8cdSSam Reynolds } 2333a873a8cdSSam Reynolds } 2334857cbf51SRichard Tran Mills } else if (type == REDUCTION_SUM_IMAGINARYPART || type == REDUCTION_MEAN_IMAGINARYPART) { 2335857cbf51SRichard Tran Mills for (i = a_aij->i[0]; i < a_aij->i[aij->A->rmap->n / bs]; i++) { 2336857cbf51SRichard Tran Mills for (jb = 0; jb < bs; jb++) { 2337857cbf51SRichard Tran Mills for (ib = 0; ib < bs; ib++) { 2338857cbf51SRichard Tran Mills work[A->cmap->rstart + a_aij->j[i] * bs + jb] += PetscImaginaryPart(*a_val); 2339857cbf51SRichard Tran Mills a_val++; 2340857cbf51SRichard Tran Mills } 2341857cbf51SRichard Tran Mills } 2342857cbf51SRichard Tran Mills } 2343857cbf51SRichard Tran Mills for (i = b_aij->i[0]; i < b_aij->i[aij->B->rmap->n / bs]; i++) { 2344857cbf51SRichard Tran Mills for (jb = 0; jb < bs; jb++) { 2345857cbf51SRichard Tran Mills for (ib = 0; ib < bs; ib++) { 2346857cbf51SRichard Tran Mills work[garray[b_aij->j[i]] * bs + jb] += PetscImaginaryPart(*b_val); 2347857cbf51SRichard Tran Mills b_val++; 2348857cbf51SRichard Tran Mills } 2349857cbf51SRichard Tran Mills } 2350857cbf51SRichard Tran Mills } 2351857cbf51SRichard Tran Mills } else SETERRQ(PetscObjectComm((PetscObject)A), PETSC_ERR_ARG_WRONG, "Unknown reduction type"); 2352857cbf51SRichard Tran Mills if (type == NORM_INFINITY) { 23531c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(work, reductions, N, MPIU_REAL, MPIU_MAX, PetscObjectComm((PetscObject)A))); 235447f7623dSRémi Lacroix } else { 23551c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(work, reductions, N, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)A))); 235647f7623dSRémi Lacroix } 23579566063dSJacob Faibussowitsch PetscCall(PetscFree(work)); 2358857cbf51SRichard Tran Mills if (type == NORM_2) { 2359a873a8cdSSam Reynolds for (i = 0; i < N; i++) reductions[i] = PetscSqrtReal(reductions[i]); 2360857cbf51SRichard Tran Mills } else if (type == REDUCTION_MEAN_REALPART || type == REDUCTION_MEAN_IMAGINARYPART) { 2361a873a8cdSSam Reynolds for (i = 0; i < N; i++) reductions[i] /= m; 236247f7623dSRémi Lacroix } 23633ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 236447f7623dSRémi Lacroix } 236547f7623dSRémi Lacroix 236666976f2fSJacob Faibussowitsch static PetscErrorCode MatInvertBlockDiagonal_MPIBAIJ(Mat A, const PetscScalar **values) 2367d71ae5a4SJacob Faibussowitsch { 2368bbead8a2SBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 2369bbead8a2SBarry Smith 2370bbead8a2SBarry Smith PetscFunctionBegin; 23719566063dSJacob Faibussowitsch PetscCall(MatInvertBlockDiagonal(a->A, values)); 23727b6c816cSBarry Smith A->factorerrortype = a->A->factorerrortype; 23737b6c816cSBarry Smith A->factorerror_zeropivot_value = a->A->factorerror_zeropivot_value; 23747b6c816cSBarry Smith A->factorerror_zeropivot_row = a->A->factorerror_zeropivot_row; 23753ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2376bbead8a2SBarry Smith } 2377bbead8a2SBarry Smith 237866976f2fSJacob Faibussowitsch static PetscErrorCode MatShift_MPIBAIJ(Mat Y, PetscScalar a) 2379d71ae5a4SJacob Faibussowitsch { 23807d68702bSBarry Smith Mat_MPIBAIJ *maij = (Mat_MPIBAIJ *)Y->data; 23816f33a894SBarry Smith Mat_SeqBAIJ *aij = (Mat_SeqBAIJ *)maij->A->data; 23827d68702bSBarry Smith 23837d68702bSBarry Smith PetscFunctionBegin; 23846f33a894SBarry Smith if (!Y->preallocated) { 23859566063dSJacob Faibussowitsch PetscCall(MatMPIBAIJSetPreallocation(Y, Y->rmap->bs, 1, NULL, 0, NULL)); 23866f33a894SBarry Smith } else if (!aij->nz) { 2387b83222d8SBarry Smith PetscInt nonew = aij->nonew; 23889566063dSJacob Faibussowitsch PetscCall(MatSeqBAIJSetPreallocation(maij->A, Y->rmap->bs, 1, NULL)); 2389b83222d8SBarry Smith aij->nonew = nonew; 23907d68702bSBarry Smith } 23919566063dSJacob Faibussowitsch PetscCall(MatShift_Basic(Y, a)); 23923ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 23937d68702bSBarry Smith } 23948c7482ecSBarry Smith 239566976f2fSJacob Faibussowitsch static PetscErrorCode MatMissingDiagonal_MPIBAIJ(Mat A, PetscBool *missing, PetscInt *d) 2396d71ae5a4SJacob Faibussowitsch { 23973b49f96aSBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 23983b49f96aSBarry Smith 23993b49f96aSBarry Smith PetscFunctionBegin; 24005f80ce2aSJacob Faibussowitsch PetscCheck(A->rmap->n == A->cmap->n, PETSC_COMM_SELF, PETSC_ERR_SUP, "Only works for square matrices"); 24019566063dSJacob Faibussowitsch PetscCall(MatMissingDiagonal(a->A, missing, d)); 24023b49f96aSBarry Smith if (d) { 24033b49f96aSBarry Smith PetscInt rstart; 24049566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(A, &rstart, NULL)); 24053b49f96aSBarry Smith *d += rstart / A->rmap->bs; 24063b49f96aSBarry Smith } 24073ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 24083b49f96aSBarry Smith } 24093b49f96aSBarry Smith 241066976f2fSJacob Faibussowitsch static PetscErrorCode MatGetDiagonalBlock_MPIBAIJ(Mat A, Mat *a) 2411d71ae5a4SJacob Faibussowitsch { 2412a5b7ff6bSBarry Smith PetscFunctionBegin; 2413a5b7ff6bSBarry Smith *a = ((Mat_MPIBAIJ *)A->data)->A; 24143ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2415a5b7ff6bSBarry Smith } 2416a5b7ff6bSBarry Smith 241717ea310bSPierre Jolivet static PetscErrorCode MatEliminateZeros_MPIBAIJ(Mat A, PetscBool keep) 241817ea310bSPierre Jolivet { 241917ea310bSPierre Jolivet Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 242017ea310bSPierre Jolivet 242117ea310bSPierre Jolivet PetscFunctionBegin; 242217ea310bSPierre Jolivet PetscCall(MatEliminateZeros_SeqBAIJ(a->A, keep)); // possibly keep zero diagonal coefficients 242317ea310bSPierre Jolivet PetscCall(MatEliminateZeros_SeqBAIJ(a->B, PETSC_FALSE)); // never keep zero diagonal coefficients 242417ea310bSPierre Jolivet PetscFunctionReturn(PETSC_SUCCESS); 242517ea310bSPierre Jolivet } 242617ea310bSPierre Jolivet 24273964eb88SJed Brown static struct _MatOps MatOps_Values = {MatSetValues_MPIBAIJ, 2428cc2dc46cSBarry Smith MatGetRow_MPIBAIJ, 2429cc2dc46cSBarry Smith MatRestoreRow_MPIBAIJ, 2430cc2dc46cSBarry Smith MatMult_MPIBAIJ, 243197304618SKris Buschelman /* 4*/ MatMultAdd_MPIBAIJ, 24327c922b88SBarry Smith MatMultTranspose_MPIBAIJ, 24337c922b88SBarry Smith MatMultTransposeAdd_MPIBAIJ, 2434f4259b30SLisandro Dalcin NULL, 2435f4259b30SLisandro Dalcin NULL, 2436f4259b30SLisandro Dalcin NULL, 2437f4259b30SLisandro Dalcin /*10*/ NULL, 2438f4259b30SLisandro Dalcin NULL, 2439f4259b30SLisandro Dalcin NULL, 2440b1a666ecSBarry Smith MatSOR_MPIBAIJ, 2441cc2dc46cSBarry Smith MatTranspose_MPIBAIJ, 244297304618SKris Buschelman /*15*/ MatGetInfo_MPIBAIJ, 24437fc3c18eSBarry Smith MatEqual_MPIBAIJ, 2444cc2dc46cSBarry Smith MatGetDiagonal_MPIBAIJ, 2445cc2dc46cSBarry Smith MatDiagonalScale_MPIBAIJ, 2446cc2dc46cSBarry Smith MatNorm_MPIBAIJ, 244797304618SKris Buschelman /*20*/ MatAssemblyBegin_MPIBAIJ, 2448cc2dc46cSBarry Smith MatAssemblyEnd_MPIBAIJ, 2449cc2dc46cSBarry Smith MatSetOption_MPIBAIJ, 2450cc2dc46cSBarry Smith MatZeroEntries_MPIBAIJ, 2451d519adbfSMatthew Knepley /*24*/ MatZeroRows_MPIBAIJ, 2452f4259b30SLisandro Dalcin NULL, 2453f4259b30SLisandro Dalcin NULL, 2454f4259b30SLisandro Dalcin NULL, 2455f4259b30SLisandro Dalcin NULL, 245626cec326SBarry Smith /*29*/ MatSetUp_MPI_Hash, 2457f4259b30SLisandro Dalcin NULL, 2458f4259b30SLisandro Dalcin NULL, 2459a5b7ff6bSBarry Smith MatGetDiagonalBlock_MPIBAIJ, 2460f4259b30SLisandro Dalcin NULL, 2461d519adbfSMatthew Knepley /*34*/ MatDuplicate_MPIBAIJ, 2462f4259b30SLisandro Dalcin NULL, 2463f4259b30SLisandro Dalcin NULL, 2464f4259b30SLisandro Dalcin NULL, 2465f4259b30SLisandro Dalcin NULL, 2466d519adbfSMatthew Knepley /*39*/ MatAXPY_MPIBAIJ, 24677dae84e0SHong Zhang MatCreateSubMatrices_MPIBAIJ, 2468cc2dc46cSBarry Smith MatIncreaseOverlap_MPIBAIJ, 2469cc2dc46cSBarry Smith MatGetValues_MPIBAIJ, 24703c896bc6SHong Zhang MatCopy_MPIBAIJ, 2471f4259b30SLisandro Dalcin /*44*/ NULL, 2472cc2dc46cSBarry Smith MatScale_MPIBAIJ, 24737d68702bSBarry Smith MatShift_MPIBAIJ, 2474f4259b30SLisandro Dalcin NULL, 24756f0a72daSMatthew G. Knepley MatZeroRowsColumns_MPIBAIJ, 2476f4259b30SLisandro Dalcin /*49*/ NULL, 2477f4259b30SLisandro Dalcin NULL, 2478f4259b30SLisandro Dalcin NULL, 2479f4259b30SLisandro Dalcin NULL, 2480f4259b30SLisandro Dalcin NULL, 248193dfae19SHong Zhang /*54*/ MatFDColoringCreate_MPIXAIJ, 2482f4259b30SLisandro Dalcin NULL, 2483cc2dc46cSBarry Smith MatSetUnfactored_MPIBAIJ, 248482094794SBarry Smith MatPermute_MPIBAIJ, 2485cc2dc46cSBarry Smith MatSetValuesBlocked_MPIBAIJ, 24867dae84e0SHong Zhang /*59*/ MatCreateSubMatrix_MPIBAIJ, 2487f14a1c24SBarry Smith MatDestroy_MPIBAIJ, 2488f14a1c24SBarry Smith MatView_MPIBAIJ, 2489f4259b30SLisandro Dalcin NULL, 2490f4259b30SLisandro Dalcin NULL, 2491f4259b30SLisandro Dalcin /*64*/ NULL, 2492f4259b30SLisandro Dalcin NULL, 2493f4259b30SLisandro Dalcin NULL, 2494f4259b30SLisandro Dalcin NULL, 2495f4259b30SLisandro Dalcin NULL, 2496d519adbfSMatthew Knepley /*69*/ MatGetRowMaxAbs_MPIBAIJ, 2497f4259b30SLisandro Dalcin NULL, 2498f4259b30SLisandro Dalcin NULL, 2499f4259b30SLisandro Dalcin NULL, 2500f4259b30SLisandro Dalcin NULL, 2501f4259b30SLisandro Dalcin /*74*/ NULL, 2502f6d58c54SBarry Smith MatFDColoringApply_BAIJ, 2503f4259b30SLisandro Dalcin NULL, 2504f4259b30SLisandro Dalcin NULL, 2505f4259b30SLisandro Dalcin NULL, 2506f4259b30SLisandro Dalcin /*79*/ NULL, 2507f4259b30SLisandro Dalcin NULL, 2508f4259b30SLisandro Dalcin NULL, 2509f4259b30SLisandro Dalcin NULL, 25105bba2384SShri Abhyankar MatLoad_MPIBAIJ, 2511f4259b30SLisandro Dalcin /*84*/ NULL, 2512f4259b30SLisandro Dalcin NULL, 2513f4259b30SLisandro Dalcin NULL, 2514f4259b30SLisandro Dalcin NULL, 2515f4259b30SLisandro Dalcin NULL, 2516f4259b30SLisandro Dalcin /*89*/ NULL, 2517f4259b30SLisandro Dalcin NULL, 2518f4259b30SLisandro Dalcin NULL, 2519f4259b30SLisandro Dalcin NULL, 2520f4259b30SLisandro Dalcin NULL, 2521f4259b30SLisandro Dalcin /*94*/ NULL, 2522f4259b30SLisandro Dalcin NULL, 2523f4259b30SLisandro Dalcin NULL, 2524f4259b30SLisandro Dalcin NULL, 2525f4259b30SLisandro Dalcin NULL, 2526f4259b30SLisandro Dalcin /*99*/ NULL, 2527f4259b30SLisandro Dalcin NULL, 2528f4259b30SLisandro Dalcin NULL, 25292726fb6dSPierre Jolivet MatConjugate_MPIBAIJ, 2530f4259b30SLisandro Dalcin NULL, 2531f4259b30SLisandro Dalcin /*104*/ NULL, 253299cafbc1SBarry Smith MatRealPart_MPIBAIJ, 25338c7482ecSBarry Smith MatImaginaryPart_MPIBAIJ, 2534f4259b30SLisandro Dalcin NULL, 2535f4259b30SLisandro Dalcin NULL, 2536f4259b30SLisandro Dalcin /*109*/ NULL, 2537f4259b30SLisandro Dalcin NULL, 2538f4259b30SLisandro Dalcin NULL, 2539f4259b30SLisandro Dalcin NULL, 25403b49f96aSBarry Smith MatMissingDiagonal_MPIBAIJ, 2541d1adec66SJed Brown /*114*/ MatGetSeqNonzeroStructure_MPIBAIJ, 2542f4259b30SLisandro Dalcin NULL, 25434683f7a4SShri Abhyankar MatGetGhosts_MPIBAIJ, 2544f4259b30SLisandro Dalcin NULL, 2545f4259b30SLisandro Dalcin NULL, 2546f4259b30SLisandro Dalcin /*119*/ NULL, 2547f4259b30SLisandro Dalcin NULL, 2548f4259b30SLisandro Dalcin NULL, 2549f4259b30SLisandro Dalcin NULL, 2550e8271787SHong Zhang MatGetMultiProcBlock_MPIBAIJ, 2551f4259b30SLisandro Dalcin /*124*/ NULL, 2552a873a8cdSSam Reynolds MatGetColumnReductions_MPIBAIJ, 25533964eb88SJed Brown MatInvertBlockDiagonal_MPIBAIJ, 2554f4259b30SLisandro Dalcin NULL, 2555f4259b30SLisandro Dalcin NULL, 2556f4259b30SLisandro Dalcin /*129*/ NULL, 2557f4259b30SLisandro Dalcin NULL, 2558f4259b30SLisandro Dalcin NULL, 2559f4259b30SLisandro Dalcin NULL, 2560f4259b30SLisandro Dalcin NULL, 2561f4259b30SLisandro Dalcin /*134*/ NULL, 2562f4259b30SLisandro Dalcin NULL, 2563f4259b30SLisandro Dalcin NULL, 2564f4259b30SLisandro Dalcin NULL, 2565f4259b30SLisandro Dalcin NULL, 256646533700Sstefano_zampini /*139*/ MatSetBlockSizes_Default, 2567f4259b30SLisandro Dalcin NULL, 2568f4259b30SLisandro Dalcin NULL, 2569bdf6f3fcSHong Zhang MatFDColoringSetUp_MPIXAIJ, 2570f4259b30SLisandro Dalcin NULL, 2571d70f29a3SPierre Jolivet /*144*/ MatCreateMPIMatConcatenateSeqMat_MPIBAIJ, 2572d70f29a3SPierre Jolivet NULL, 2573d70f29a3SPierre Jolivet NULL, 257499a7f59eSMark Adams NULL, 257599a7f59eSMark Adams NULL, 25767fb60732SBarry Smith NULL, 2577dec0b466SHong Zhang /*150*/ NULL, 257817ea310bSPierre Jolivet MatEliminateZeros_MPIBAIJ}; 257979bdfe76SSatish Balay 2580cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIBAIJ_MPISBAIJ(Mat, MatType, MatReuse, Mat *); 2581c9225affSStefano Zampini PETSC_INTERN PetscErrorCode MatConvert_XAIJ_IS(Mat, MatType, MatReuse, Mat *); 2582d94109b8SHong Zhang 258366976f2fSJacob Faibussowitsch static PetscErrorCode MatMPIBAIJSetPreallocationCSR_MPIBAIJ(Mat B, PetscInt bs, const PetscInt ii[], const PetscInt jj[], const PetscScalar V[]) 2584d71ae5a4SJacob Faibussowitsch { 2585b8d659d7SLisandro Dalcin PetscInt m, rstart, cstart, cend; 2586f4259b30SLisandro Dalcin PetscInt i, j, dlen, olen, nz, nz_max = 0, *d_nnz = NULL, *o_nnz = NULL; 2587f4259b30SLisandro Dalcin const PetscInt *JJ = NULL; 2588f4259b30SLisandro Dalcin PetscScalar *values = NULL; 2589d47bf9aaSJed Brown PetscBool roworiented = ((Mat_MPIBAIJ *)B->data)->roworiented; 25903bd0feecSPierre Jolivet PetscBool nooffprocentries; 2591aac34f13SBarry Smith 2592aac34f13SBarry Smith PetscFunctionBegin; 25939566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetBlockSize(B->rmap, bs)); 25949566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetBlockSize(B->cmap, bs)); 25959566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->rmap)); 25969566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->cmap)); 25979566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetBlockSize(B->rmap, &bs)); 2598d0f46423SBarry Smith m = B->rmap->n / bs; 2599d0f46423SBarry Smith rstart = B->rmap->rstart / bs; 2600d0f46423SBarry Smith cstart = B->cmap->rstart / bs; 2601d0f46423SBarry Smith cend = B->cmap->rend / bs; 2602b8d659d7SLisandro Dalcin 26035f80ce2aSJacob Faibussowitsch PetscCheck(!ii[0], PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "ii[0] must be 0 but it is %" PetscInt_FMT, ii[0]); 26049566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(m, &d_nnz, m, &o_nnz)); 2605aac34f13SBarry Smith for (i = 0; i < m; i++) { 2606cf12db73SBarry Smith nz = ii[i + 1] - ii[i]; 26075f80ce2aSJacob Faibussowitsch PetscCheck(nz >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Local row %" PetscInt_FMT " has a negative number of columns %" PetscInt_FMT, i, nz); 2608b8d659d7SLisandro Dalcin nz_max = PetscMax(nz_max, nz); 260937cd3c0dSBarry Smith dlen = 0; 261037cd3c0dSBarry Smith olen = 0; 2611cf12db73SBarry Smith JJ = jj + ii[i]; 2612b8d659d7SLisandro Dalcin for (j = 0; j < nz; j++) { 261337cd3c0dSBarry Smith if (*JJ < cstart || *JJ >= cend) olen++; 261437cd3c0dSBarry Smith else dlen++; 2615aac34f13SBarry Smith JJ++; 2616aac34f13SBarry Smith } 261737cd3c0dSBarry Smith d_nnz[i] = dlen; 261837cd3c0dSBarry Smith o_nnz[i] = olen; 2619aac34f13SBarry Smith } 26209566063dSJacob Faibussowitsch PetscCall(MatMPIBAIJSetPreallocation(B, bs, 0, d_nnz, 0, o_nnz)); 26219566063dSJacob Faibussowitsch PetscCall(PetscFree2(d_nnz, o_nnz)); 2622aac34f13SBarry Smith 2623b8d659d7SLisandro Dalcin values = (PetscScalar *)V; 262448a46eb9SPierre Jolivet if (!values) PetscCall(PetscCalloc1(bs * bs * nz_max, &values)); 2625b8d659d7SLisandro Dalcin for (i = 0; i < m; i++) { 2626b8d659d7SLisandro Dalcin PetscInt row = i + rstart; 2627cf12db73SBarry Smith PetscInt ncols = ii[i + 1] - ii[i]; 2628cf12db73SBarry Smith const PetscInt *icols = jj + ii[i]; 2629bb80cfbbSStefano Zampini if (bs == 1 || !roworiented) { /* block ordering matches the non-nested layout of MatSetValues so we can insert entire rows */ 2630cf12db73SBarry Smith const PetscScalar *svals = values + (V ? (bs * bs * ii[i]) : 0); 26319566063dSJacob Faibussowitsch PetscCall(MatSetValuesBlocked_MPIBAIJ(B, 1, &row, ncols, icols, svals, INSERT_VALUES)); 26323adadaf3SJed Brown } else { /* block ordering does not match so we can only insert one block at a time. */ 26333adadaf3SJed Brown PetscInt j; 26343adadaf3SJed Brown for (j = 0; j < ncols; j++) { 26353adadaf3SJed Brown const PetscScalar *svals = values + (V ? (bs * bs * (ii[i] + j)) : 0); 26369566063dSJacob Faibussowitsch PetscCall(MatSetValuesBlocked_MPIBAIJ(B, 1, &row, 1, &icols[j], svals, INSERT_VALUES)); 26373adadaf3SJed Brown } 26383adadaf3SJed Brown } 2639aac34f13SBarry Smith } 2640aac34f13SBarry Smith 26419566063dSJacob Faibussowitsch if (!V) PetscCall(PetscFree(values)); 26423bd0feecSPierre Jolivet nooffprocentries = B->nooffprocentries; 26433bd0feecSPierre Jolivet B->nooffprocentries = PETSC_TRUE; 26449566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY)); 26459566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY)); 26463bd0feecSPierre Jolivet B->nooffprocentries = nooffprocentries; 26473bd0feecSPierre Jolivet 26489566063dSJacob Faibussowitsch PetscCall(MatSetOption(B, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE)); 26493ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2650aac34f13SBarry Smith } 2651aac34f13SBarry Smith 2652aac34f13SBarry Smith /*@C 265311a5261eSBarry Smith MatMPIBAIJSetPreallocationCSR - Creates a sparse parallel matrix in `MATBAIJ` format using the given nonzero structure and (optional) numerical values 2654aac34f13SBarry Smith 2655d083f849SBarry Smith Collective 2656aac34f13SBarry Smith 2657aac34f13SBarry Smith Input Parameters: 26581c4f3114SJed Brown + B - the matrix 2659dfb205c3SBarry Smith . bs - the block size 266020f4b53cSBarry Smith . i - the indices into `j` for the start of each local row (starts with zero) 2661aac34f13SBarry Smith . j - the column indices for each local row (starts with zero) these must be sorted for each row 2662aac34f13SBarry Smith - v - optional values in the matrix 2663aac34f13SBarry Smith 2664664954b6SBarry Smith Level: advanced 2665aac34f13SBarry Smith 266695452b02SPatrick Sanan Notes: 266711a5261eSBarry Smith The order of the entries in values is specified by the `MatOption` `MAT_ROW_ORIENTED`. For example, C programs 266811a5261eSBarry Smith may want to use the default `MAT_ROW_ORIENTED` with value `PETSC_TRUE` and use an array v[nnz][bs][bs] where the second index is 26693adadaf3SJed Brown over rows within a block and the last index is over columns within a block row. Fortran programs will likely set 267011a5261eSBarry Smith `MAT_ROW_ORIENTED` with value `PETSC_FALSE` and use a Fortran array v(bs,bs,nnz) in which the first index is over rows within a 26713adadaf3SJed Brown block column and the second index is over columns within a block. 26723adadaf3SJed Brown 2673664954b6SBarry Smith Though this routine has Preallocation() in the name it also sets the exact nonzero locations of the matrix entries and usually the numerical values as well 2674664954b6SBarry Smith 26757d2c085eSPierre Jolivet .seealso: `Mat`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIBAIJSetPreallocation()`, `MatCreateAIJ()`, `MATMPIAIJ`, `MatCreateMPIBAIJWithArrays()`, `MATMPIBAIJ` 2676aac34f13SBarry Smith @*/ 2677d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIBAIJSetPreallocationCSR(Mat B, PetscInt bs, const PetscInt i[], const PetscInt j[], const PetscScalar v[]) 2678d71ae5a4SJacob Faibussowitsch { 2679aac34f13SBarry Smith PetscFunctionBegin; 26806ba663aaSJed Brown PetscValidHeaderSpecific(B, MAT_CLASSID, 1); 26816ba663aaSJed Brown PetscValidType(B, 1); 26826ba663aaSJed Brown PetscValidLogicalCollectiveInt(B, bs, 2); 2683cac4c232SBarry Smith PetscTryMethod(B, "MatMPIBAIJSetPreallocationCSR_C", (Mat, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[]), (B, bs, i, j, v)); 26843ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2685aac34f13SBarry Smith } 2686aac34f13SBarry Smith 2687d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIBAIJSetPreallocation_MPIBAIJ(Mat B, PetscInt bs, PetscInt d_nz, const PetscInt *d_nnz, PetscInt o_nz, const PetscInt *o_nnz) 2688d71ae5a4SJacob Faibussowitsch { 2689ad79cf63SBarry Smith Mat_MPIBAIJ *b = (Mat_MPIBAIJ *)B->data; 2690535b19f3SBarry Smith PetscInt i; 26915d2a9ed1SStefano Zampini PetscMPIInt size; 2692a23d5eceSKris Buschelman 2693a23d5eceSKris Buschelman PetscFunctionBegin; 2694ad79cf63SBarry Smith if (B->hash_active) { 2695aea10558SJacob Faibussowitsch B->ops[0] = b->cops; 2696ad79cf63SBarry Smith B->hash_active = PETSC_FALSE; 2697ad79cf63SBarry Smith } 2698ad79cf63SBarry Smith if (!B->preallocated) PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)B), bs, &B->bstash)); 26999566063dSJacob Faibussowitsch PetscCall(MatSetBlockSize(B, PetscAbs(bs))); 27009566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->rmap)); 27019566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->cmap)); 27029566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetBlockSize(B->rmap, &bs)); 2703899cda47SBarry Smith 2704a23d5eceSKris Buschelman if (d_nnz) { 2705ad540459SPierre Jolivet for (i = 0; i < B->rmap->n / bs; i++) PetscCheck(d_nnz[i] >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "d_nnz cannot be less than -1: local row %" PetscInt_FMT " value %" PetscInt_FMT, i, d_nnz[i]); 2706a23d5eceSKris Buschelman } 2707a23d5eceSKris Buschelman if (o_nnz) { 2708ad540459SPierre Jolivet for (i = 0; i < B->rmap->n / bs; i++) PetscCheck(o_nnz[i] >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "o_nnz cannot be less than -1: local row %" PetscInt_FMT " value %" PetscInt_FMT, i, o_nnz[i]); 2709a23d5eceSKris Buschelman } 2710a23d5eceSKris Buschelman 2711a23d5eceSKris Buschelman b->bs2 = bs * bs; 2712d0f46423SBarry Smith b->mbs = B->rmap->n / bs; 2713d0f46423SBarry Smith b->nbs = B->cmap->n / bs; 2714d0f46423SBarry Smith b->Mbs = B->rmap->N / bs; 2715d0f46423SBarry Smith b->Nbs = B->cmap->N / bs; 2716a23d5eceSKris Buschelman 2717ad540459SPierre Jolivet for (i = 0; i <= b->size; i++) b->rangebs[i] = B->rmap->range[i] / bs; 2718d0f46423SBarry Smith b->rstartbs = B->rmap->rstart / bs; 2719d0f46423SBarry Smith b->rendbs = B->rmap->rend / bs; 2720d0f46423SBarry Smith b->cstartbs = B->cmap->rstart / bs; 2721d0f46423SBarry Smith b->cendbs = B->cmap->rend / bs; 2722a23d5eceSKris Buschelman 2723cb7b82ddSBarry Smith #if defined(PETSC_USE_CTABLE) 2724eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIDestroy(&b->colmap)); 2725cb7b82ddSBarry Smith #else 27269566063dSJacob Faibussowitsch PetscCall(PetscFree(b->colmap)); 2727cb7b82ddSBarry Smith #endif 27289566063dSJacob Faibussowitsch PetscCall(PetscFree(b->garray)); 27299566063dSJacob Faibussowitsch PetscCall(VecDestroy(&b->lvec)); 27309566063dSJacob Faibussowitsch PetscCall(VecScatterDestroy(&b->Mvctx)); 2731cb7b82ddSBarry Smith 27329566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)B), &size)); 27339566063dSJacob Faibussowitsch PetscCall(MatDestroy(&b->B)); 27349566063dSJacob Faibussowitsch PetscCall(MatCreate(PETSC_COMM_SELF, &b->B)); 27359566063dSJacob Faibussowitsch PetscCall(MatSetSizes(b->B, B->rmap->n, size > 1 ? B->cmap->N : 0, B->rmap->n, size > 1 ? B->cmap->N : 0)); 27369566063dSJacob Faibussowitsch PetscCall(MatSetType(b->B, MATSEQBAIJ)); 2737cb7b82ddSBarry Smith 2738ad79cf63SBarry Smith PetscCall(MatDestroy(&b->A)); 27399566063dSJacob Faibussowitsch PetscCall(MatCreate(PETSC_COMM_SELF, &b->A)); 27409566063dSJacob Faibussowitsch PetscCall(MatSetSizes(b->A, B->rmap->n, B->cmap->n, B->rmap->n, B->cmap->n)); 27419566063dSJacob Faibussowitsch PetscCall(MatSetType(b->A, MATSEQBAIJ)); 2742a23d5eceSKris Buschelman 27439566063dSJacob Faibussowitsch PetscCall(MatSeqBAIJSetPreallocation(b->A, bs, d_nz, d_nnz)); 27449566063dSJacob Faibussowitsch PetscCall(MatSeqBAIJSetPreallocation(b->B, bs, o_nz, o_nnz)); 2745526dfc15SBarry Smith B->preallocated = PETSC_TRUE; 2746cb7b82ddSBarry Smith B->was_assembled = PETSC_FALSE; 2747cb7b82ddSBarry Smith B->assembled = PETSC_FALSE; 27483ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2749a23d5eceSKris Buschelman } 2750a23d5eceSKris Buschelman 27517087cfbeSBarry Smith extern PetscErrorCode MatDiagonalScaleLocal_MPIBAIJ(Mat, Vec); 27527087cfbeSBarry Smith extern PetscErrorCode MatSetHashTableFactor_MPIBAIJ(Mat, PetscReal); 27535bf65638SKris Buschelman 2754d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode MatConvert_MPIBAIJ_MPIAdj(Mat B, MatType newtype, MatReuse reuse, Mat *adj) 2755d71ae5a4SJacob Faibussowitsch { 275682094794SBarry Smith Mat_MPIBAIJ *b = (Mat_MPIBAIJ *)B->data; 275782094794SBarry Smith Mat_SeqBAIJ *d = (Mat_SeqBAIJ *)b->A->data, *o = (Mat_SeqBAIJ *)b->B->data; 275882094794SBarry Smith PetscInt M = B->rmap->n / B->rmap->bs, i, *ii, *jj, cnt, j, k, rstart = B->rmap->rstart / B->rmap->bs; 275982094794SBarry Smith const PetscInt *id = d->i, *jd = d->j, *io = o->i, *jo = o->j, *garray = b->garray; 276082094794SBarry Smith 276182094794SBarry Smith PetscFunctionBegin; 27629566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(M + 1, &ii)); 276382094794SBarry Smith ii[0] = 0; 276482094794SBarry Smith for (i = 0; i < M; i++) { 276508401ef6SPierre Jolivet PetscCheck((id[i + 1] - id[i]) >= 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Indices wrong %" PetscInt_FMT " %" PetscInt_FMT " %" PetscInt_FMT, i, id[i], id[i + 1]); 276608401ef6SPierre Jolivet PetscCheck((io[i + 1] - io[i]) >= 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Indices wrong %" PetscInt_FMT " %" PetscInt_FMT " %" PetscInt_FMT, i, io[i], io[i + 1]); 276782094794SBarry Smith ii[i + 1] = ii[i] + id[i + 1] - id[i] + io[i + 1] - io[i]; 27685ee9ba1cSJed Brown /* remove one from count of matrix has diagonal */ 27695ee9ba1cSJed Brown for (j = id[i]; j < id[i + 1]; j++) { 27709371c9d4SSatish Balay if (jd[j] == i) { 27719371c9d4SSatish Balay ii[i + 1]--; 27729371c9d4SSatish Balay break; 27739371c9d4SSatish Balay } 27745ee9ba1cSJed Brown } 277582094794SBarry Smith } 27769566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(ii[M], &jj)); 277782094794SBarry Smith cnt = 0; 277882094794SBarry Smith for (i = 0; i < M; i++) { 277982094794SBarry Smith for (j = io[i]; j < io[i + 1]; j++) { 278082094794SBarry Smith if (garray[jo[j]] > rstart) break; 278182094794SBarry Smith jj[cnt++] = garray[jo[j]]; 278282094794SBarry Smith } 278382094794SBarry Smith for (k = id[i]; k < id[i + 1]; k++) { 2784ad540459SPierre Jolivet if (jd[k] != i) jj[cnt++] = rstart + jd[k]; 278582094794SBarry Smith } 2786ad540459SPierre Jolivet for (; j < io[i + 1]; j++) jj[cnt++] = garray[jo[j]]; 278782094794SBarry Smith } 27889566063dSJacob Faibussowitsch PetscCall(MatCreateMPIAdj(PetscObjectComm((PetscObject)B), M, B->cmap->N / B->rmap->bs, ii, jj, NULL, adj)); 27893ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 279082094794SBarry Smith } 279182094794SBarry Smith 2792c6db04a5SJed Brown #include <../src/mat/impls/aij/mpi/mpiaij.h> 279362471d69SBarry Smith 2794cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_SeqBAIJ_SeqAIJ(Mat, MatType, MatReuse, Mat *); 2795b2573a8aSBarry Smith 2796d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode MatConvert_MPIBAIJ_MPIAIJ(Mat A, MatType newtype, MatReuse reuse, Mat *newmat) 2797d71ae5a4SJacob Faibussowitsch { 279862471d69SBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 279985a69837SSatish Balay Mat_MPIAIJ *b; 28005f80ce2aSJacob Faibussowitsch Mat B; 280162471d69SBarry Smith 280262471d69SBarry Smith PetscFunctionBegin; 28035f80ce2aSJacob Faibussowitsch PetscCheck(A->assembled, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Matrix must be assembled"); 280462471d69SBarry Smith 28050f6d62edSLisandro Dalcin if (reuse == MAT_REUSE_MATRIX) { 28060f6d62edSLisandro Dalcin B = *newmat; 28070f6d62edSLisandro Dalcin } else { 28089566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)A), &B)); 28099566063dSJacob Faibussowitsch PetscCall(MatSetType(B, MATMPIAIJ)); 28109566063dSJacob Faibussowitsch PetscCall(MatSetSizes(B, A->rmap->n, A->cmap->n, A->rmap->N, A->cmap->N)); 28119566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizes(B, A->rmap->bs, A->cmap->bs)); 28129566063dSJacob Faibussowitsch PetscCall(MatSeqAIJSetPreallocation(B, 0, NULL)); 28139566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(B, 0, NULL, 0, NULL)); 28140f6d62edSLisandro Dalcin } 281562471d69SBarry Smith b = (Mat_MPIAIJ *)B->data; 281662471d69SBarry Smith 28170f6d62edSLisandro Dalcin if (reuse == MAT_REUSE_MATRIX) { 28189566063dSJacob Faibussowitsch PetscCall(MatConvert_SeqBAIJ_SeqAIJ(a->A, MATSEQAIJ, MAT_REUSE_MATRIX, &b->A)); 28199566063dSJacob Faibussowitsch PetscCall(MatConvert_SeqBAIJ_SeqAIJ(a->B, MATSEQAIJ, MAT_REUSE_MATRIX, &b->B)); 28200f6d62edSLisandro Dalcin } else { 28217c612885SStefano Zampini PetscInt *garray = a->garray; 28227c612885SStefano Zampini Mat_SeqAIJ *bB; 28237c612885SStefano Zampini PetscInt bs, nnz; 28249566063dSJacob Faibussowitsch PetscCall(MatDestroy(&b->A)); 28259566063dSJacob Faibussowitsch PetscCall(MatDestroy(&b->B)); 28267c612885SStefano Zampini /* just clear out the data structure */ 28277c612885SStefano Zampini PetscCall(MatDisAssemble_MPIAIJ(B)); 28289566063dSJacob Faibussowitsch PetscCall(MatConvert_SeqBAIJ_SeqAIJ(a->A, MATSEQAIJ, MAT_INITIAL_MATRIX, &b->A)); 28299566063dSJacob Faibussowitsch PetscCall(MatConvert_SeqBAIJ_SeqAIJ(a->B, MATSEQAIJ, MAT_INITIAL_MATRIX, &b->B)); 28307c612885SStefano Zampini 28317c612885SStefano Zampini /* Global numbering for b->B columns */ 28327c612885SStefano Zampini bB = (Mat_SeqAIJ *)b->B->data; 28337c612885SStefano Zampini bs = A->rmap->bs; 28347c612885SStefano Zampini nnz = bB->i[A->rmap->n]; 28357c612885SStefano Zampini for (PetscInt k = 0; k < nnz; k++) { 28367c612885SStefano Zampini PetscInt bj = bB->j[k] / bs; 28377c612885SStefano Zampini PetscInt br = bB->j[k] % bs; 28387c612885SStefano Zampini bB->j[k] = garray[bj] * bs + br; 28397c612885SStefano Zampini } 28400f6d62edSLisandro Dalcin } 28419566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY)); 28429566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY)); 28430f6d62edSLisandro Dalcin 2844511c6705SHong Zhang if (reuse == MAT_INPLACE_MATRIX) { 28459566063dSJacob Faibussowitsch PetscCall(MatHeaderReplace(A, &B)); 284662471d69SBarry Smith } else { 284762471d69SBarry Smith *newmat = B; 284862471d69SBarry Smith } 28493ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 285062471d69SBarry Smith } 285162471d69SBarry Smith 28520bad9183SKris Buschelman /*MC 2853fafad747SKris Buschelman MATMPIBAIJ - MATMPIBAIJ = "mpibaij" - A matrix type to be used for distributed block sparse matrices. 28540bad9183SKris Buschelman 28550bad9183SKris Buschelman Options Database Keys: 285611a5261eSBarry Smith + -mat_type mpibaij - sets the matrix type to `MATMPIBAIJ` during a call to `MatSetFromOptions()` 28578c07d4e3SBarry Smith . -mat_block_size <bs> - set the blocksize used to store the matrix 28586679dcc1SBarry Smith . -mat_baij_mult_version version - indicate the version of the matrix-vector product to use (0 often indicates using BLAS) 285967b8a455SSatish Balay - -mat_use_hash_table <fact> - set hash table factor 28600bad9183SKris Buschelman 28610bad9183SKris Buschelman Level: beginner 28620cd7f59aSBarry Smith 286311a5261eSBarry Smith Note: 28645e0ad47dSPierre Jolivet `MatSetOption(A, MAT_STRUCTURE_ONLY, PETSC_TRUE)` may be called for this matrix type. In this no 286511a5261eSBarry Smith space is allocated for the nonzero entries and any entries passed with `MatSetValues()` are ignored 28660bad9183SKris Buschelman 28675e0ad47dSPierre Jolivet .seealso: `Mat`, `MATBAIJ`, `MATSEQBAIJ`, `MatCreateBAIJ` 28680bad9183SKris Buschelman M*/ 28690bad9183SKris Buschelman 2870cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIBAIJ_MPIBSTRM(Mat, MatType, MatReuse, Mat *); 2871c0cdd4a1SDahai Guo 2872d71ae5a4SJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatCreate_MPIBAIJ(Mat B) 2873d71ae5a4SJacob Faibussowitsch { 2874273d9f13SBarry Smith Mat_MPIBAIJ *b; 287594ae4db5SBarry Smith PetscBool flg = PETSC_FALSE; 2876273d9f13SBarry Smith 2877273d9f13SBarry Smith PetscFunctionBegin; 28784dfa11a4SJacob Faibussowitsch PetscCall(PetscNew(&b)); 287982502324SSatish Balay B->data = (void *)b; 2880aea10558SJacob Faibussowitsch B->ops[0] = MatOps_Values; 2881273d9f13SBarry Smith B->assembled = PETSC_FALSE; 2882273d9f13SBarry Smith 2883273d9f13SBarry Smith B->insertmode = NOT_SET_VALUES; 28849566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)B), &b->rank)); 28859566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)B), &b->size)); 2886273d9f13SBarry Smith 2887273d9f13SBarry Smith /* build local table of row and column ownerships */ 28889566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(b->size + 1, &b->rangebs)); 2889273d9f13SBarry Smith 2890273d9f13SBarry Smith /* build cache for off array entries formed */ 28919566063dSJacob Faibussowitsch PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)B), 1, &B->stash)); 289226fbe8dcSKarl Rupp 2893273d9f13SBarry Smith b->donotstash = PETSC_FALSE; 28940298fd71SBarry Smith b->colmap = NULL; 28950298fd71SBarry Smith b->garray = NULL; 2896273d9f13SBarry Smith b->roworiented = PETSC_TRUE; 2897273d9f13SBarry Smith 2898273d9f13SBarry Smith /* stuff used in block assembly */ 2899f4259b30SLisandro Dalcin b->barray = NULL; 2900273d9f13SBarry Smith 2901273d9f13SBarry Smith /* stuff used for matrix vector multiply */ 2902f4259b30SLisandro Dalcin b->lvec = NULL; 2903f4259b30SLisandro Dalcin b->Mvctx = NULL; 2904273d9f13SBarry Smith 2905273d9f13SBarry Smith /* stuff for MatGetRow() */ 2906f4259b30SLisandro Dalcin b->rowindices = NULL; 2907f4259b30SLisandro Dalcin b->rowvalues = NULL; 2908273d9f13SBarry Smith b->getrowactive = PETSC_FALSE; 2909273d9f13SBarry Smith 2910273d9f13SBarry Smith /* hash table stuff */ 2911f4259b30SLisandro Dalcin b->ht = NULL; 2912f4259b30SLisandro Dalcin b->hd = NULL; 2913273d9f13SBarry Smith b->ht_size = 0; 2914273d9f13SBarry Smith b->ht_flag = PETSC_FALSE; 2915273d9f13SBarry Smith b->ht_fact = 0; 2916273d9f13SBarry Smith b->ht_total_ct = 0; 2917273d9f13SBarry Smith b->ht_insert_ct = 0; 2918273d9f13SBarry Smith 29197dae84e0SHong Zhang /* stuff for MatCreateSubMatrices_MPIBAIJ_local() */ 29207a868f3eSHong Zhang b->ijonly = PETSC_FALSE; 29217a868f3eSHong Zhang 29229566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpibaij_mpiadj_C", MatConvert_MPIBAIJ_MPIAdj)); 29239566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpibaij_mpiaij_C", MatConvert_MPIBAIJ_MPIAIJ)); 29249566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpibaij_mpisbaij_C", MatConvert_MPIBAIJ_MPISBAIJ)); 29257ea3e4caSstefano_zampini #if defined(PETSC_HAVE_HYPRE) 29269566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpibaij_hypre_C", MatConvert_AIJ_HYPRE)); 29277ea3e4caSstefano_zampini #endif 29289566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatStoreValues_C", MatStoreValues_MPIBAIJ)); 29299566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatRetrieveValues_C", MatRetrieveValues_MPIBAIJ)); 29309566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMPIBAIJSetPreallocation_C", MatMPIBAIJSetPreallocation_MPIBAIJ)); 29319566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMPIBAIJSetPreallocationCSR_C", MatMPIBAIJSetPreallocationCSR_MPIBAIJ)); 29329566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatDiagonalScaleLocal_C", MatDiagonalScaleLocal_MPIBAIJ)); 29339566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatSetHashTableFactor_C", MatSetHashTableFactor_MPIBAIJ)); 29349566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpibaij_is_C", MatConvert_XAIJ_IS)); 29359566063dSJacob Faibussowitsch PetscCall(PetscObjectChangeTypeName((PetscObject)B, MATMPIBAIJ)); 293694ae4db5SBarry Smith 2937d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)B), NULL, "Options for loading MPIBAIJ matrix 1", "Mat"); 29389566063dSJacob Faibussowitsch PetscCall(PetscOptionsName("-mat_use_hash_table", "Use hash table to save time in constructing matrix", "MatSetOption", &flg)); 293994ae4db5SBarry Smith if (flg) { 294094ae4db5SBarry Smith PetscReal fact = 1.39; 29419566063dSJacob Faibussowitsch PetscCall(MatSetOption(B, MAT_USE_HASH_TABLE, PETSC_TRUE)); 29429566063dSJacob Faibussowitsch PetscCall(PetscOptionsReal("-mat_use_hash_table", "Use hash table factor", "MatMPIBAIJSetHashTableFactor", fact, &fact, NULL)); 294394ae4db5SBarry Smith if (fact <= 1.0) fact = 1.39; 29449566063dSJacob Faibussowitsch PetscCall(MatMPIBAIJSetHashTableFactor(B, fact)); 29459566063dSJacob Faibussowitsch PetscCall(PetscInfo(B, "Hash table Factor used %5.2g\n", (double)fact)); 294694ae4db5SBarry Smith } 2947d0609cedSBarry Smith PetscOptionsEnd(); 29483ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2949273d9f13SBarry Smith } 2950273d9f13SBarry Smith 29512920cce0SJacob Faibussowitsch // PetscClangLinter pragma disable: -fdoc-section-header-unknown 2952209238afSKris Buschelman /*MC 2953002d173eSKris Buschelman MATBAIJ - MATBAIJ = "baij" - A matrix type to be used for block sparse matrices. 2954209238afSKris Buschelman 295511a5261eSBarry Smith This matrix type is identical to `MATSEQBAIJ` when constructed with a single process communicator, 295611a5261eSBarry Smith and `MATMPIBAIJ` otherwise. 2957209238afSKris Buschelman 2958209238afSKris Buschelman Options Database Keys: 295911a5261eSBarry Smith . -mat_type baij - sets the matrix type to `MATBAIJ` during a call to `MatSetFromOptions()` 2960209238afSKris Buschelman 2961209238afSKris Buschelman Level: beginner 2962209238afSKris Buschelman 296367be906fSBarry Smith .seealso: `Mat`, `MatCreateBAIJ()`, `MATSEQBAIJ`, `MATMPIBAIJ`, `MatMPIBAIJSetPreallocation()`, `MatMPIBAIJSetPreallocationCSR()` 2964209238afSKris Buschelman M*/ 2965209238afSKris Buschelman 2966273d9f13SBarry Smith /*@C 296711a5261eSBarry Smith MatMPIBAIJSetPreallocation - Allocates memory for a sparse parallel matrix in `MATMPIBAIJ` format 296867be906fSBarry Smith (block compressed row). 2969273d9f13SBarry Smith 2970c3339decSBarry Smith Collective 2971273d9f13SBarry Smith 2972273d9f13SBarry Smith Input Parameters: 29731c4f3114SJed Brown + B - the matrix 297411a5261eSBarry Smith . bs - size of block, the blocks are ALWAYS square. One can use `MatSetBlockSizes()` to set a different row and column blocksize but the row 297567be906fSBarry Smith blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with `MatCreateVecs()` 2976273d9f13SBarry Smith . d_nz - number of block nonzeros per block row in diagonal portion of local 2977273d9f13SBarry Smith submatrix (same for all local rows) 2978273d9f13SBarry Smith . d_nnz - array containing the number of block nonzeros in the various block rows 2979273d9f13SBarry Smith of the in diagonal portion of the local (possibly different for each block 298067be906fSBarry Smith row) or `NULL`. If you plan to factor the matrix you must leave room for the diagonal entry and 298195742e49SBarry Smith set it even if it is zero. 2982273d9f13SBarry Smith . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 2983273d9f13SBarry Smith submatrix (same for all local rows). 2984273d9f13SBarry Smith - o_nnz - array containing the number of nonzeros in the various block rows of the 2985273d9f13SBarry Smith off-diagonal portion of the local submatrix (possibly different for 298667be906fSBarry Smith each block row) or `NULL`. 2987273d9f13SBarry Smith 298849a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 2989273d9f13SBarry Smith 2990273d9f13SBarry Smith Options Database Keys: 29918c07d4e3SBarry Smith + -mat_block_size - size of the blocks to use 299267b8a455SSatish Balay - -mat_use_hash_table <fact> - set hash table factor 2993273d9f13SBarry Smith 299467be906fSBarry Smith Level: intermediate 299567be906fSBarry Smith 2996273d9f13SBarry Smith Notes: 299767be906fSBarry Smith For good matrix assembly performance 299867be906fSBarry Smith the user should preallocate the matrix storage by setting the parameters 299967be906fSBarry Smith `d_nz` (or `d_nnz`) and `o_nz` (or `o_nnz`). By setting these parameters accurately, 300067be906fSBarry Smith performance can be increased by more than a factor of 50. 300167be906fSBarry Smith 300211a5261eSBarry Smith If `PETSC_DECIDE` or `PETSC_DETERMINE` is used for a particular argument on one processor 3003273d9f13SBarry Smith than it must be used on all processors that share the object for that argument. 3004273d9f13SBarry Smith 3005273d9f13SBarry Smith Storage Information: 3006273d9f13SBarry Smith For a square global matrix we define each processor's diagonal portion 3007273d9f13SBarry Smith to be its local rows and the corresponding columns (a square submatrix); 3008273d9f13SBarry Smith each processor's off-diagonal portion encompasses the remainder of the 3009273d9f13SBarry Smith local matrix (a rectangular submatrix). 3010273d9f13SBarry Smith 3011273d9f13SBarry Smith The user can specify preallocated storage for the diagonal part of 301267be906fSBarry Smith the local submatrix with either `d_nz` or `d_nnz` (not both). Set 301367be906fSBarry Smith `d_nz` = `PETSC_DEFAULT` and `d_nnz` = `NULL` for PETSc to control dynamic 3014273d9f13SBarry Smith memory allocation. Likewise, specify preallocated storage for the 301567be906fSBarry Smith off-diagonal part of the local submatrix with `o_nz` or `o_nnz` (not both). 3016273d9f13SBarry Smith 3017273d9f13SBarry Smith Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 3018273d9f13SBarry Smith the figure below we depict these three local rows and all columns (0-11). 3019273d9f13SBarry Smith 3020273d9f13SBarry Smith .vb 3021273d9f13SBarry Smith 0 1 2 3 4 5 6 7 8 9 10 11 3022a4b1a0f6SJed Brown -------------------------- 3023273d9f13SBarry Smith row 3 |o o o d d d o o o o o o 3024273d9f13SBarry Smith row 4 |o o o d d d o o o o o o 3025273d9f13SBarry Smith row 5 |o o o d d d o o o o o o 3026a4b1a0f6SJed Brown -------------------------- 3027273d9f13SBarry Smith .ve 3028273d9f13SBarry Smith 3029273d9f13SBarry Smith Thus, any entries in the d locations are stored in the d (diagonal) 3030273d9f13SBarry Smith submatrix, and any entries in the o locations are stored in the 3031273d9f13SBarry Smith o (off-diagonal) submatrix. Note that the d and the o submatrices are 303211a5261eSBarry Smith stored simply in the `MATSEQBAIJ` format for compressed row storage. 3033273d9f13SBarry Smith 303467be906fSBarry Smith Now `d_nz` should indicate the number of block nonzeros per row in the d matrix, 303567be906fSBarry Smith and `o_nz` should indicate the number of block nonzeros per row in the o matrix. 3036273d9f13SBarry Smith In general, for PDE problems in which most nonzeros are near the diagonal, 303720f4b53cSBarry Smith one expects `d_nz` >> `o_nz`. 3038273d9f13SBarry Smith 303911a5261eSBarry Smith You can call `MatGetInfo()` to get information on how effective the preallocation was; 3040aa95bbe8SBarry Smith for example the fields mallocs,nz_allocated,nz_used,nz_unneeded; 304167be906fSBarry Smith You can also run with the option `-info` and look for messages with the string 3042aa95bbe8SBarry Smith malloc in them to see if additional memory allocation was needed. 3043aa95bbe8SBarry Smith 304467be906fSBarry Smith .seealso: `Mat`, `MATMPIBAIJ`, `MatCreate()`, `MatCreateSeqBAIJ()`, `MatSetValues()`, `MatCreateBAIJ()`, `MatMPIBAIJSetPreallocationCSR()`, `PetscSplitOwnership()` 3045273d9f13SBarry Smith @*/ 3046d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIBAIJSetPreallocation(Mat B, PetscInt bs, PetscInt d_nz, const PetscInt d_nnz[], PetscInt o_nz, const PetscInt o_nnz[]) 3047d71ae5a4SJacob Faibussowitsch { 3048273d9f13SBarry Smith PetscFunctionBegin; 30496ba663aaSJed Brown PetscValidHeaderSpecific(B, MAT_CLASSID, 1); 30506ba663aaSJed Brown PetscValidType(B, 1); 30516ba663aaSJed Brown PetscValidLogicalCollectiveInt(B, bs, 2); 3052cac4c232SBarry Smith PetscTryMethod(B, "MatMPIBAIJSetPreallocation_C", (Mat, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[]), (B, bs, d_nz, d_nnz, o_nz, o_nnz)); 30533ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3054273d9f13SBarry Smith } 3055273d9f13SBarry Smith 30562920cce0SJacob Faibussowitsch // PetscClangLinter pragma disable: -fdoc-section-header-unknown 305779bdfe76SSatish Balay /*@C 305811a5261eSBarry Smith MatCreateBAIJ - Creates a sparse parallel matrix in `MATBAIJ` format 305967be906fSBarry Smith (block compressed row). 306079bdfe76SSatish Balay 3061d083f849SBarry Smith Collective 3062db81eaa0SLois Curfman McInnes 306379bdfe76SSatish Balay Input Parameters: 3064db81eaa0SLois Curfman McInnes + comm - MPI communicator 306511a5261eSBarry Smith . bs - size of block, the blocks are ALWAYS square. One can use `MatSetBlockSizes()` to set a different row and column blocksize but the row 306611a5261eSBarry Smith blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with `MatCreateVecs()` 306711a5261eSBarry Smith . m - number of local rows (or `PETSC_DECIDE` to have calculated if M is given) 306892e8d321SLois Curfman McInnes This value should be the same as the local size used in creating the 306992e8d321SLois Curfman McInnes y vector for the matrix-vector product y = Ax. 307011a5261eSBarry Smith . n - number of local columns (or `PETSC_DECIDE` to have calculated if N is given) 307192e8d321SLois Curfman McInnes This value should be the same as the local size used in creating the 307292e8d321SLois Curfman McInnes x vector for the matrix-vector product y = Ax. 307311a5261eSBarry Smith . M - number of global rows (or `PETSC_DETERMINE` to have calculated if m is given) 307411a5261eSBarry Smith . N - number of global columns (or `PETSC_DETERMINE` to have calculated if n is given) 307547a75d0bSBarry Smith . d_nz - number of nonzero blocks per block row in diagonal portion of local 307679bdfe76SSatish Balay submatrix (same for all local rows) 307747a75d0bSBarry Smith . d_nnz - array containing the number of nonzero blocks in the various block rows 307892e8d321SLois Curfman McInnes of the in diagonal portion of the local (possibly different for each block 30790298fd71SBarry Smith row) or NULL. If you plan to factor the matrix you must leave room for the diagonal entry 308095742e49SBarry Smith and set it even if it is zero. 308147a75d0bSBarry Smith . o_nz - number of nonzero blocks per block row in the off-diagonal portion of local 308279bdfe76SSatish Balay submatrix (same for all local rows). 308347a75d0bSBarry Smith - o_nnz - array containing the number of nonzero blocks in the various block rows of the 308492e8d321SLois Curfman McInnes off-diagonal portion of the local submatrix (possibly different for 30850298fd71SBarry Smith each block row) or NULL. 308679bdfe76SSatish Balay 308779bdfe76SSatish Balay Output Parameter: 308879bdfe76SSatish Balay . A - the matrix 308979bdfe76SSatish Balay 3090db81eaa0SLois Curfman McInnes Options Database Keys: 30918c07d4e3SBarry Smith + -mat_block_size - size of the blocks to use 309267b8a455SSatish Balay - -mat_use_hash_table <fact> - set hash table factor 30933ffaccefSLois Curfman McInnes 309467be906fSBarry Smith Level: intermediate 309567be906fSBarry Smith 309667be906fSBarry Smith Notes: 309777433607SBarry Smith It is recommended that one use `MatCreateFromOptions()` or the `MatCreate()`, `MatSetType()` and/or `MatSetFromOptions()`, 309877433607SBarry Smith MatXXXXSetPreallocation() paradigm instead of this routine directly. 309977433607SBarry Smith [MatXXXXSetPreallocation() is, for example, `MatSeqBAIJSetPreallocation()`] 310077433607SBarry Smith 310167be906fSBarry Smith For good matrix assembly performance 310267be906fSBarry Smith the user should preallocate the matrix storage by setting the parameters 310367be906fSBarry Smith `d_nz` (or `d_nnz`) and `o_nz` (or `o_nnz`). By setting these parameters accurately, 310467be906fSBarry Smith performance can be increased by more than a factor of 50. 310567be906fSBarry Smith 310649a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 310749a6f317SBarry Smith 310847a75d0bSBarry Smith A nonzero block is any block that as 1 or more nonzeros in it 310947a75d0bSBarry Smith 311079bdfe76SSatish Balay The user MUST specify either the local or global matrix dimensions 311179bdfe76SSatish Balay (possibly both). 311279bdfe76SSatish Balay 311311a5261eSBarry Smith If `PETSC_DECIDE` or `PETSC_DETERMINE` is used for a particular argument on one processor 3114be79a94dSBarry Smith than it must be used on all processors that share the object for that argument. 3115be79a94dSBarry Smith 311679bdfe76SSatish Balay Storage Information: 311779bdfe76SSatish Balay For a square global matrix we define each processor's diagonal portion 311879bdfe76SSatish Balay to be its local rows and the corresponding columns (a square submatrix); 311979bdfe76SSatish Balay each processor's off-diagonal portion encompasses the remainder of the 312079bdfe76SSatish Balay local matrix (a rectangular submatrix). 312179bdfe76SSatish Balay 312279bdfe76SSatish Balay The user can specify preallocated storage for the diagonal part of 312379bdfe76SSatish Balay the local submatrix with either d_nz or d_nnz (not both). Set 312467be906fSBarry Smith `d_nz` = `PETSC_DEFAULT` and `d_nnz` = `NULL` for PETSc to control dynamic 312579bdfe76SSatish Balay memory allocation. Likewise, specify preallocated storage for the 312667be906fSBarry Smith off-diagonal part of the local submatrix with `o_nz` or `o_nnz` (not both). 312779bdfe76SSatish Balay 312879bdfe76SSatish Balay Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 312979bdfe76SSatish Balay the figure below we depict these three local rows and all columns (0-11). 313079bdfe76SSatish Balay 3131db81eaa0SLois Curfman McInnes .vb 3132db81eaa0SLois Curfman McInnes 0 1 2 3 4 5 6 7 8 9 10 11 3133a4b1a0f6SJed Brown -------------------------- 3134db81eaa0SLois Curfman McInnes row 3 |o o o d d d o o o o o o 3135db81eaa0SLois Curfman McInnes row 4 |o o o d d d o o o o o o 3136db81eaa0SLois Curfman McInnes row 5 |o o o d d d o o o o o o 3137a4b1a0f6SJed Brown -------------------------- 3138db81eaa0SLois Curfman McInnes .ve 313979bdfe76SSatish Balay 314079bdfe76SSatish Balay Thus, any entries in the d locations are stored in the d (diagonal) 314179bdfe76SSatish Balay submatrix, and any entries in the o locations are stored in the 314279bdfe76SSatish Balay o (off-diagonal) submatrix. Note that the d and the o submatrices are 314311a5261eSBarry Smith stored simply in the `MATSEQBAIJ` format for compressed row storage. 314479bdfe76SSatish Balay 314567be906fSBarry Smith Now `d_nz` should indicate the number of block nonzeros per row in the d matrix, 314667be906fSBarry Smith and `o_nz` should indicate the number of block nonzeros per row in the o matrix. 314779bdfe76SSatish Balay In general, for PDE problems in which most nonzeros are near the diagonal, 314820f4b53cSBarry Smith one expects `d_nz` >> `o_nz`. 314979bdfe76SSatish Balay 315042747ad1SJacob Faibussowitsch .seealso: `Mat`, `MatCreate()`, `MatCreateSeqBAIJ()`, `MatSetValues()`, `MatMPIBAIJSetPreallocation()`, `MatMPIBAIJSetPreallocationCSR()` 315179bdfe76SSatish Balay @*/ 3152d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateBAIJ(MPI_Comm comm, PetscInt bs, PetscInt m, PetscInt n, PetscInt M, PetscInt N, PetscInt d_nz, const PetscInt d_nnz[], PetscInt o_nz, const PetscInt o_nnz[], Mat *A) 3153d71ae5a4SJacob Faibussowitsch { 3154b24ad042SBarry Smith PetscMPIInt size; 315579bdfe76SSatish Balay 3156d64ed03dSBarry Smith PetscFunctionBegin; 31579566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, A)); 31589566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*A, m, n, M, N)); 31599566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 3160273d9f13SBarry Smith if (size > 1) { 31619566063dSJacob Faibussowitsch PetscCall(MatSetType(*A, MATMPIBAIJ)); 31629566063dSJacob Faibussowitsch PetscCall(MatMPIBAIJSetPreallocation(*A, bs, d_nz, d_nnz, o_nz, o_nnz)); 3163273d9f13SBarry Smith } else { 31649566063dSJacob Faibussowitsch PetscCall(MatSetType(*A, MATSEQBAIJ)); 31659566063dSJacob Faibussowitsch PetscCall(MatSeqBAIJSetPreallocation(*A, bs, d_nz, d_nnz)); 31663914022bSBarry Smith } 31673ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 316879bdfe76SSatish Balay } 3169026e39d0SSatish Balay 3170d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatDuplicate_MPIBAIJ(Mat matin, MatDuplicateOption cpvalues, Mat *newmat) 3171d71ae5a4SJacob Faibussowitsch { 31720ac07820SSatish Balay Mat mat; 31730ac07820SSatish Balay Mat_MPIBAIJ *a, *oldmat = (Mat_MPIBAIJ *)matin->data; 3174b24ad042SBarry Smith PetscInt len = 0; 31750ac07820SSatish Balay 3176d64ed03dSBarry Smith PetscFunctionBegin; 3177f4259b30SLisandro Dalcin *newmat = NULL; 31789566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)matin), &mat)); 31799566063dSJacob Faibussowitsch PetscCall(MatSetSizes(mat, matin->rmap->n, matin->cmap->n, matin->rmap->N, matin->cmap->N)); 31809566063dSJacob Faibussowitsch PetscCall(MatSetType(mat, ((PetscObject)matin)->type_name)); 31817fff6886SHong Zhang 3182420957c1SBarry Smith PetscCall(PetscLayoutReference(matin->rmap, &mat->rmap)); 3183420957c1SBarry Smith PetscCall(PetscLayoutReference(matin->cmap, &mat->cmap)); 3184420957c1SBarry Smith if (matin->hash_active) { 3185420957c1SBarry Smith PetscCall(MatSetUp(mat)); 3186420957c1SBarry Smith } else { 3187d5f3da31SBarry Smith mat->factortype = matin->factortype; 3188273d9f13SBarry Smith mat->preallocated = PETSC_TRUE; 31890ac07820SSatish Balay mat->assembled = PETSC_TRUE; 31907fff6886SHong Zhang mat->insertmode = NOT_SET_VALUES; 31917fff6886SHong Zhang 3192273d9f13SBarry Smith a = (Mat_MPIBAIJ *)mat->data; 3193d0f46423SBarry Smith mat->rmap->bs = matin->rmap->bs; 31940ac07820SSatish Balay a->bs2 = oldmat->bs2; 31950ac07820SSatish Balay a->mbs = oldmat->mbs; 31960ac07820SSatish Balay a->nbs = oldmat->nbs; 31970ac07820SSatish Balay a->Mbs = oldmat->Mbs; 31980ac07820SSatish Balay a->Nbs = oldmat->Nbs; 31990ac07820SSatish Balay 32000ac07820SSatish Balay a->size = oldmat->size; 32010ac07820SSatish Balay a->rank = oldmat->rank; 3202aef5e8e0SSatish Balay a->donotstash = oldmat->donotstash; 3203aef5e8e0SSatish Balay a->roworiented = oldmat->roworiented; 3204f4259b30SLisandro Dalcin a->rowindices = NULL; 3205f4259b30SLisandro Dalcin a->rowvalues = NULL; 32060ac07820SSatish Balay a->getrowactive = PETSC_FALSE; 3207f4259b30SLisandro Dalcin a->barray = NULL; 3208899cda47SBarry Smith a->rstartbs = oldmat->rstartbs; 3209899cda47SBarry Smith a->rendbs = oldmat->rendbs; 3210899cda47SBarry Smith a->cstartbs = oldmat->cstartbs; 3211899cda47SBarry Smith a->cendbs = oldmat->cendbs; 32120ac07820SSatish Balay 3213133cdb44SSatish Balay /* hash table stuff */ 3214f4259b30SLisandro Dalcin a->ht = NULL; 3215f4259b30SLisandro Dalcin a->hd = NULL; 3216133cdb44SSatish Balay a->ht_size = 0; 3217133cdb44SSatish Balay a->ht_flag = oldmat->ht_flag; 321825fdafccSSatish Balay a->ht_fact = oldmat->ht_fact; 3219133cdb44SSatish Balay a->ht_total_ct = 0; 3220133cdb44SSatish Balay a->ht_insert_ct = 0; 3221133cdb44SSatish Balay 32229566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(a->rangebs, oldmat->rangebs, a->size + 1)); 32230ac07820SSatish Balay if (oldmat->colmap) { 3224aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 3225eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIDuplicate(oldmat->colmap, &a->colmap)); 322648e59246SSatish Balay #else 32279566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(a->Nbs, &a->colmap)); 32289566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(a->colmap, oldmat->colmap, a->Nbs)); 322948e59246SSatish Balay #endif 3230f4259b30SLisandro Dalcin } else a->colmap = NULL; 32314beb1cfeSHong Zhang 32320ac07820SSatish Balay if (oldmat->garray && (len = ((Mat_SeqBAIJ *)(oldmat->B->data))->nbs)) { 32339566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(len, &a->garray)); 32349566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(a->garray, oldmat->garray, len)); 3235f4259b30SLisandro Dalcin } else a->garray = NULL; 32360ac07820SSatish Balay 32379566063dSJacob Faibussowitsch PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)matin), matin->rmap->bs, &mat->bstash)); 32389566063dSJacob Faibussowitsch PetscCall(VecDuplicate(oldmat->lvec, &a->lvec)); 32399566063dSJacob Faibussowitsch PetscCall(VecScatterCopy(oldmat->Mvctx, &a->Mvctx)); 32407fff6886SHong Zhang 32419566063dSJacob Faibussowitsch PetscCall(MatDuplicate(oldmat->A, cpvalues, &a->A)); 32429566063dSJacob Faibussowitsch PetscCall(MatDuplicate(oldmat->B, cpvalues, &a->B)); 3243420957c1SBarry Smith } 32449566063dSJacob Faibussowitsch PetscCall(PetscFunctionListDuplicate(((PetscObject)matin)->qlist, &((PetscObject)mat)->qlist)); 32450ac07820SSatish Balay *newmat = mat; 32463ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 32470ac07820SSatish Balay } 324857b952d6SSatish Balay 3249618cc2edSLisandro Dalcin /* Used for both MPIBAIJ and MPISBAIJ matrices */ 3250d71ae5a4SJacob Faibussowitsch PetscErrorCode MatLoad_MPIBAIJ_Binary(Mat mat, PetscViewer viewer) 3251d71ae5a4SJacob Faibussowitsch { 3252b51a4376SLisandro Dalcin PetscInt header[4], M, N, nz, bs, m, n, mbs, nbs, rows, cols, sum, i, j, k; 3253b51a4376SLisandro Dalcin PetscInt *rowidxs, *colidxs, rs, cs, ce; 3254b51a4376SLisandro Dalcin PetscScalar *matvals; 3255b51a4376SLisandro Dalcin 3256b51a4376SLisandro Dalcin PetscFunctionBegin; 32579566063dSJacob Faibussowitsch PetscCall(PetscViewerSetUp(viewer)); 3258b51a4376SLisandro Dalcin 3259b51a4376SLisandro Dalcin /* read in matrix header */ 32609566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryRead(viewer, header, 4, NULL, PETSC_INT)); 32615f80ce2aSJacob Faibussowitsch PetscCheck(header[0] == MAT_FILE_CLASSID, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Not a matrix object in file"); 32629371c9d4SSatish Balay M = header[1]; 32639371c9d4SSatish Balay N = header[2]; 32649371c9d4SSatish Balay nz = header[3]; 32655f80ce2aSJacob Faibussowitsch PetscCheck(M >= 0, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Matrix row size (%" PetscInt_FMT ") in file is negative", M); 32665f80ce2aSJacob Faibussowitsch PetscCheck(N >= 0, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Matrix column size (%" PetscInt_FMT ") in file is negative", N); 32675f80ce2aSJacob Faibussowitsch PetscCheck(nz >= 0, PETSC_COMM_SELF, PETSC_ERR_FILE_UNEXPECTED, "Matrix stored in special format on disk, cannot load as MPIBAIJ"); 3268b51a4376SLisandro Dalcin 3269b51a4376SLisandro Dalcin /* set block sizes from the viewer's .info file */ 32709566063dSJacob Faibussowitsch PetscCall(MatLoad_Binary_BlockSizes(mat, viewer)); 3271618cc2edSLisandro Dalcin /* set local sizes if not set already */ 3272618cc2edSLisandro Dalcin if (mat->rmap->n < 0 && M == N) mat->rmap->n = mat->cmap->n; 3273618cc2edSLisandro Dalcin if (mat->cmap->n < 0 && M == N) mat->cmap->n = mat->rmap->n; 3274b51a4376SLisandro Dalcin /* set global sizes if not set already */ 3275b51a4376SLisandro Dalcin if (mat->rmap->N < 0) mat->rmap->N = M; 3276b51a4376SLisandro Dalcin if (mat->cmap->N < 0) mat->cmap->N = N; 32779566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(mat->rmap)); 32789566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(mat->cmap)); 3279b51a4376SLisandro Dalcin 3280b51a4376SLisandro Dalcin /* check if the matrix sizes are correct */ 32819566063dSJacob Faibussowitsch PetscCall(MatGetSize(mat, &rows, &cols)); 32825f80ce2aSJacob Faibussowitsch PetscCheck(M == rows && N == cols, PETSC_COMM_SELF, PETSC_ERR_FILE_UNEXPECTED, "Matrix in file of different sizes (%" PetscInt_FMT ", %" PetscInt_FMT ") than the input matrix (%" PetscInt_FMT ", %" PetscInt_FMT ")", M, N, rows, cols); 32839566063dSJacob Faibussowitsch PetscCall(MatGetBlockSize(mat, &bs)); 32849566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(mat, &m, &n)); 32859566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetRange(mat->rmap, &rs, NULL)); 32869566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetRange(mat->cmap, &cs, &ce)); 32879371c9d4SSatish Balay mbs = m / bs; 32889371c9d4SSatish Balay nbs = n / bs; 3289b51a4376SLisandro Dalcin 3290b51a4376SLisandro Dalcin /* read in row lengths and build row indices */ 32919566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m + 1, &rowidxs)); 32929566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryReadAll(viewer, rowidxs + 1, m, PETSC_DECIDE, M, PETSC_INT)); 32939371c9d4SSatish Balay rowidxs[0] = 0; 32949371c9d4SSatish Balay for (i = 0; i < m; i++) rowidxs[i + 1] += rowidxs[i]; 32951c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&rowidxs[m], &sum, 1, MPIU_INT, MPI_SUM, PetscObjectComm((PetscObject)viewer))); 32965f80ce2aSJacob Faibussowitsch PetscCheck(sum == nz, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Inconsistent matrix data in file: nonzeros = %" PetscInt_FMT ", sum-row-lengths = %" PetscInt_FMT, nz, sum); 3297b51a4376SLisandro Dalcin 3298b51a4376SLisandro Dalcin /* read in column indices and matrix values */ 32999566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(rowidxs[m], &colidxs, rowidxs[m], &matvals)); 33009566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryReadAll(viewer, colidxs, rowidxs[m], PETSC_DETERMINE, PETSC_DETERMINE, PETSC_INT)); 33019566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryReadAll(viewer, matvals, rowidxs[m], PETSC_DETERMINE, PETSC_DETERMINE, PETSC_SCALAR)); 3302b51a4376SLisandro Dalcin 3303b51a4376SLisandro Dalcin { /* preallocate matrix storage */ 3304b51a4376SLisandro Dalcin PetscBT bt; /* helper bit set to count diagonal nonzeros */ 3305b51a4376SLisandro Dalcin PetscHSetI ht; /* helper hash set to count off-diagonal nonzeros */ 3306618cc2edSLisandro Dalcin PetscBool sbaij, done; 3307b51a4376SLisandro Dalcin PetscInt *d_nnz, *o_nnz; 3308b51a4376SLisandro Dalcin 33099566063dSJacob Faibussowitsch PetscCall(PetscBTCreate(nbs, &bt)); 33109566063dSJacob Faibussowitsch PetscCall(PetscHSetICreate(&ht)); 33119566063dSJacob Faibussowitsch PetscCall(PetscCalloc2(mbs, &d_nnz, mbs, &o_nnz)); 33129566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)mat, MATMPISBAIJ, &sbaij)); 3313b51a4376SLisandro Dalcin for (i = 0; i < mbs; i++) { 33149566063dSJacob Faibussowitsch PetscCall(PetscBTMemzero(nbs, bt)); 33159566063dSJacob Faibussowitsch PetscCall(PetscHSetIClear(ht)); 3316618cc2edSLisandro Dalcin for (k = 0; k < bs; k++) { 3317618cc2edSLisandro Dalcin PetscInt row = bs * i + k; 3318618cc2edSLisandro Dalcin for (j = rowidxs[row]; j < rowidxs[row + 1]; j++) { 3319618cc2edSLisandro Dalcin PetscInt col = colidxs[j]; 3320618cc2edSLisandro Dalcin if (!sbaij || col >= row) { 3321618cc2edSLisandro Dalcin if (col >= cs && col < ce) { 3322618cc2edSLisandro Dalcin if (!PetscBTLookupSet(bt, (col - cs) / bs)) d_nnz[i]++; 3323b51a4376SLisandro Dalcin } else { 33249566063dSJacob Faibussowitsch PetscCall(PetscHSetIQueryAdd(ht, col / bs, &done)); 3325b51a4376SLisandro Dalcin if (done) o_nnz[i]++; 3326b51a4376SLisandro Dalcin } 3327b51a4376SLisandro Dalcin } 3328618cc2edSLisandro Dalcin } 3329618cc2edSLisandro Dalcin } 3330618cc2edSLisandro Dalcin } 33319566063dSJacob Faibussowitsch PetscCall(PetscBTDestroy(&bt)); 33329566063dSJacob Faibussowitsch PetscCall(PetscHSetIDestroy(&ht)); 33339566063dSJacob Faibussowitsch PetscCall(MatMPIBAIJSetPreallocation(mat, bs, 0, d_nnz, 0, o_nnz)); 33349566063dSJacob Faibussowitsch PetscCall(MatMPISBAIJSetPreallocation(mat, bs, 0, d_nnz, 0, o_nnz)); 33359566063dSJacob Faibussowitsch PetscCall(PetscFree2(d_nnz, o_nnz)); 3336b51a4376SLisandro Dalcin } 3337b51a4376SLisandro Dalcin 3338b51a4376SLisandro Dalcin /* store matrix values */ 3339b51a4376SLisandro Dalcin for (i = 0; i < m; i++) { 3340b51a4376SLisandro Dalcin PetscInt row = rs + i, s = rowidxs[i], e = rowidxs[i + 1]; 33419566063dSJacob Faibussowitsch PetscCall((*mat->ops->setvalues)(mat, 1, &row, e - s, colidxs + s, matvals + s, INSERT_VALUES)); 3342b51a4376SLisandro Dalcin } 3343b51a4376SLisandro Dalcin 33449566063dSJacob Faibussowitsch PetscCall(PetscFree(rowidxs)); 33459566063dSJacob Faibussowitsch PetscCall(PetscFree2(colidxs, matvals)); 33469566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(mat, MAT_FINAL_ASSEMBLY)); 33479566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(mat, MAT_FINAL_ASSEMBLY)); 33483ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3349b51a4376SLisandro Dalcin } 3350b51a4376SLisandro Dalcin 3351d71ae5a4SJacob Faibussowitsch PetscErrorCode MatLoad_MPIBAIJ(Mat mat, PetscViewer viewer) 3352d71ae5a4SJacob Faibussowitsch { 33537f489da9SVaclav Hapla PetscBool isbinary; 33544683f7a4SShri Abhyankar 33554683f7a4SShri Abhyankar PetscFunctionBegin; 33569566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary)); 33575f80ce2aSJacob Faibussowitsch PetscCheck(isbinary, PetscObjectComm((PetscObject)viewer), PETSC_ERR_SUP, "Viewer type %s not yet supported for reading %s matrices", ((PetscObject)viewer)->type_name, ((PetscObject)mat)->type_name); 33589566063dSJacob Faibussowitsch PetscCall(MatLoad_MPIBAIJ_Binary(mat, viewer)); 33593ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 33604683f7a4SShri Abhyankar } 33614683f7a4SShri Abhyankar 3362133cdb44SSatish Balay /*@ 336311a5261eSBarry Smith MatMPIBAIJSetHashTableFactor - Sets the factor required to compute the size of the matrices hash table 3364133cdb44SSatish Balay 3365133cdb44SSatish Balay Input Parameters: 3366a2b725a8SWilliam Gropp + mat - the matrix 3367a2b725a8SWilliam Gropp - fact - factor 3368133cdb44SSatish Balay 336911a5261eSBarry Smith Options Database Key: 337011a5261eSBarry Smith . -mat_use_hash_table <fact> - provide the factor 3371fee21e36SBarry Smith 33728c890885SBarry Smith Level: advanced 33738c890885SBarry Smith 337467be906fSBarry Smith .seealso: `Mat`, `MATMPIBAIJ`, `MatSetOption()` 3375133cdb44SSatish Balay @*/ 3376d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIBAIJSetHashTableFactor(Mat mat, PetscReal fact) 3377d71ae5a4SJacob Faibussowitsch { 33785bf65638SKris Buschelman PetscFunctionBegin; 3379cac4c232SBarry Smith PetscTryMethod(mat, "MatSetHashTableFactor_C", (Mat, PetscReal), (mat, fact)); 33803ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 33815bf65638SKris Buschelman } 33825bf65638SKris Buschelman 3383d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetHashTableFactor_MPIBAIJ(Mat mat, PetscReal fact) 3384d71ae5a4SJacob Faibussowitsch { 338525fdafccSSatish Balay Mat_MPIBAIJ *baij; 3386133cdb44SSatish Balay 3387133cdb44SSatish Balay PetscFunctionBegin; 3388133cdb44SSatish Balay baij = (Mat_MPIBAIJ *)mat->data; 3389133cdb44SSatish Balay baij->ht_fact = fact; 33903ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3391133cdb44SSatish Balay } 3392f2a5309cSSatish Balay 3393d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIBAIJGetSeqBAIJ(Mat A, Mat *Ad, Mat *Ao, const PetscInt *colmap[]) 3394d71ae5a4SJacob Faibussowitsch { 3395f2a5309cSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 3396ab4d48faSStefano Zampini PetscBool flg; 33975fd66863SKarl Rupp 3398f2a5309cSSatish Balay PetscFunctionBegin; 33999566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)A, MATMPIBAIJ, &flg)); 34005f80ce2aSJacob Faibussowitsch PetscCheck(flg, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "This function requires a MATMPIBAIJ matrix as input"); 340121e72a00SBarry Smith if (Ad) *Ad = a->A; 340221e72a00SBarry Smith if (Ao) *Ao = a->B; 340321e72a00SBarry Smith if (colmap) *colmap = a->garray; 34043ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3405f2a5309cSSatish Balay } 340685535b8eSBarry Smith 340785535b8eSBarry Smith /* 340885535b8eSBarry Smith Special version for direct calls from Fortran (to eliminate two function call overheads 340985535b8eSBarry Smith */ 341085535b8eSBarry Smith #if defined(PETSC_HAVE_FORTRAN_CAPS) 341185535b8eSBarry Smith #define matmpibaijsetvaluesblocked_ MATMPIBAIJSETVALUESBLOCKED 341285535b8eSBarry Smith #elif !defined(PETSC_HAVE_FORTRAN_UNDERSCORE) 341385535b8eSBarry Smith #define matmpibaijsetvaluesblocked_ matmpibaijsetvaluesblocked 341485535b8eSBarry Smith #endif 341585535b8eSBarry Smith 34162920cce0SJacob Faibussowitsch // PetscClangLinter pragma disable: -fdoc-synopsis-matching-symbol-name 341785535b8eSBarry Smith /*@C 341811a5261eSBarry Smith MatMPIBAIJSetValuesBlocked - Direct Fortran call to replace call to `MatSetValuesBlocked()` 341985535b8eSBarry Smith 3420c3339decSBarry Smith Collective 342185535b8eSBarry Smith 342285535b8eSBarry Smith Input Parameters: 3423fe59aa6dSJacob Faibussowitsch + matin - the matrix 342485535b8eSBarry Smith . min - number of input rows 342585535b8eSBarry Smith . im - input rows 342685535b8eSBarry Smith . nin - number of input columns 342785535b8eSBarry Smith . in - input columns 342885535b8eSBarry Smith . v - numerical values input 342911a5261eSBarry Smith - addvin - `INSERT_VALUES` or `ADD_VALUES` 343085535b8eSBarry Smith 343120f4b53cSBarry Smith Level: advanced 343220f4b53cSBarry Smith 3433fe59aa6dSJacob Faibussowitsch Developer Notes: 343411a5261eSBarry Smith This has a complete copy of `MatSetValuesBlocked_MPIBAIJ()` which is terrible code un-reuse. 343585535b8eSBarry Smith 343667be906fSBarry Smith .seealso: `Mat`, `MatSetValuesBlocked()` 343785535b8eSBarry Smith @*/ 343866976f2fSJacob Faibussowitsch PETSC_EXTERN PetscErrorCode matmpibaijsetvaluesblocked_(Mat *matin, PetscInt *min, const PetscInt im[], PetscInt *nin, const PetscInt in[], const MatScalar v[], InsertMode *addvin) 3439d71ae5a4SJacob Faibussowitsch { 344085535b8eSBarry Smith /* convert input arguments to C version */ 344185535b8eSBarry Smith Mat mat = *matin; 344285535b8eSBarry Smith PetscInt m = *min, n = *nin; 344385535b8eSBarry Smith InsertMode addv = *addvin; 344485535b8eSBarry Smith 344585535b8eSBarry Smith Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 344685535b8eSBarry Smith const MatScalar *value; 344785535b8eSBarry Smith MatScalar *barray = baij->barray; 3448ace3abfcSBarry Smith PetscBool roworiented = baij->roworiented; 344985535b8eSBarry Smith PetscInt i, j, ii, jj, row, col, rstart = baij->rstartbs; 345085535b8eSBarry Smith PetscInt rend = baij->rendbs, cstart = baij->cstartbs, stepval; 3451d0f46423SBarry Smith PetscInt cend = baij->cendbs, bs = mat->rmap->bs, bs2 = baij->bs2; 345285535b8eSBarry Smith 345385535b8eSBarry Smith PetscFunctionBegin; 345485535b8eSBarry Smith /* tasks normally handled by MatSetValuesBlocked() */ 345526fbe8dcSKarl Rupp if (mat->insertmode == NOT_SET_VALUES) mat->insertmode = addv; 34565f80ce2aSJacob Faibussowitsch else PetscCheck(mat->insertmode == addv, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Cannot mix add values and insert values"); 34575f80ce2aSJacob Faibussowitsch PetscCheck(!mat->factortype, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Not for factored matrix"); 345885535b8eSBarry Smith if (mat->assembled) { 345985535b8eSBarry Smith mat->was_assembled = PETSC_TRUE; 346085535b8eSBarry Smith mat->assembled = PETSC_FALSE; 346185535b8eSBarry Smith } 34629566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(MAT_SetValues, mat, 0, 0, 0)); 346385535b8eSBarry Smith 346485535b8eSBarry Smith if (!barray) { 34659566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(bs2, &barray)); 346685535b8eSBarry Smith baij->barray = barray; 346785535b8eSBarry Smith } 346885535b8eSBarry Smith 346926fbe8dcSKarl Rupp if (roworiented) stepval = (n - 1) * bs; 347026fbe8dcSKarl Rupp else stepval = (m - 1) * bs; 347126fbe8dcSKarl Rupp 347285535b8eSBarry Smith for (i = 0; i < m; i++) { 347385535b8eSBarry Smith if (im[i] < 0) continue; 34746bdcaf15SBarry Smith PetscCheck(im[i] < baij->Mbs, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large, row %" PetscInt_FMT " max %" PetscInt_FMT, im[i], baij->Mbs - 1); 347585535b8eSBarry Smith if (im[i] >= rstart && im[i] < rend) { 347685535b8eSBarry Smith row = im[i] - rstart; 347785535b8eSBarry Smith for (j = 0; j < n; j++) { 347885535b8eSBarry Smith /* If NumCol = 1 then a copy is not required */ 347985535b8eSBarry Smith if ((roworiented) && (n == 1)) { 348085535b8eSBarry Smith barray = (MatScalar *)v + i * bs2; 348185535b8eSBarry Smith } else if ((!roworiented) && (m == 1)) { 348285535b8eSBarry Smith barray = (MatScalar *)v + j * bs2; 348385535b8eSBarry Smith } else { /* Here a copy is required */ 348485535b8eSBarry Smith if (roworiented) { 348585535b8eSBarry Smith value = v + i * (stepval + bs) * bs + j * bs; 348685535b8eSBarry Smith } else { 348785535b8eSBarry Smith value = v + j * (stepval + bs) * bs + i * bs; 348885535b8eSBarry Smith } 348985535b8eSBarry Smith for (ii = 0; ii < bs; ii++, value += stepval) { 3490ad540459SPierre Jolivet for (jj = 0; jj < bs; jj++) *barray++ = *value++; 349185535b8eSBarry Smith } 349285535b8eSBarry Smith barray -= bs2; 349385535b8eSBarry Smith } 349485535b8eSBarry Smith 349585535b8eSBarry Smith if (in[j] >= cstart && in[j] < cend) { 349685535b8eSBarry Smith col = in[j] - cstart; 34979566063dSJacob Faibussowitsch PetscCall(MatSetValuesBlocked_SeqBAIJ_Inlined(baij->A, row, col, barray, addv, im[i], in[j])); 3498f7d195e4SLawrence Mitchell } else if (in[j] < 0) { 3499f7d195e4SLawrence Mitchell continue; 3500f7d195e4SLawrence Mitchell } else { 3501f7d195e4SLawrence Mitchell PetscCheck(in[j] < baij->Nbs, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large, col %" PetscInt_FMT " max %" PetscInt_FMT, in[j], baij->Nbs - 1); 350285535b8eSBarry Smith if (mat->was_assembled) { 350348a46eb9SPierre Jolivet if (!baij->colmap) PetscCall(MatCreateColmap_MPIBAIJ_Private(mat)); 350485535b8eSBarry Smith 350585535b8eSBarry Smith #if defined(PETSC_USE_DEBUG) 350685535b8eSBarry Smith #if defined(PETSC_USE_CTABLE) 35079371c9d4SSatish Balay { 35089371c9d4SSatish Balay PetscInt data; 3509eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIGetWithDefault(baij->colmap, in[j] + 1, 0, &data)); 351008401ef6SPierre Jolivet PetscCheck((data - 1) % bs == 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Incorrect colmap"); 351185535b8eSBarry Smith } 351285535b8eSBarry Smith #else 351308401ef6SPierre Jolivet PetscCheck((baij->colmap[in[j]] - 1) % bs == 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Incorrect colmap"); 351485535b8eSBarry Smith #endif 351585535b8eSBarry Smith #endif 351685535b8eSBarry Smith #if defined(PETSC_USE_CTABLE) 3517eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIGetWithDefault(baij->colmap, in[j] + 1, 0, &col)); 351885535b8eSBarry Smith col = (col - 1) / bs; 351985535b8eSBarry Smith #else 352085535b8eSBarry Smith col = (baij->colmap[in[j]] - 1) / bs; 352185535b8eSBarry Smith #endif 352285535b8eSBarry Smith if (col < 0 && !((Mat_SeqBAIJ *)(baij->A->data))->nonew) { 35239566063dSJacob Faibussowitsch PetscCall(MatDisAssemble_MPIBAIJ(mat)); 352485535b8eSBarry Smith col = in[j]; 352585535b8eSBarry Smith } 352626fbe8dcSKarl Rupp } else col = in[j]; 35279566063dSJacob Faibussowitsch PetscCall(MatSetValuesBlocked_SeqBAIJ_Inlined(baij->B, row, col, barray, addv, im[i], in[j])); 352885535b8eSBarry Smith } 352985535b8eSBarry Smith } 353085535b8eSBarry Smith } else { 353185535b8eSBarry Smith if (!baij->donotstash) { 353285535b8eSBarry Smith if (roworiented) { 35339566063dSJacob Faibussowitsch PetscCall(MatStashValuesRowBlocked_Private(&mat->bstash, im[i], n, in, v, m, n, i)); 353485535b8eSBarry Smith } else { 35359566063dSJacob Faibussowitsch PetscCall(MatStashValuesColBlocked_Private(&mat->bstash, im[i], n, in, v, m, n, i)); 353685535b8eSBarry Smith } 353785535b8eSBarry Smith } 353885535b8eSBarry Smith } 353985535b8eSBarry Smith } 354085535b8eSBarry Smith 354185535b8eSBarry Smith /* task normally handled by MatSetValuesBlocked() */ 35429566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(MAT_SetValues, mat, 0, 0, 0)); 35433ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 354485535b8eSBarry Smith } 3545dfb205c3SBarry Smith 3546dfb205c3SBarry Smith /*@ 354711a5261eSBarry Smith MatCreateMPIBAIJWithArrays - creates a `MATMPIBAIJ` matrix using arrays that contain in standard block 3548dfb205c3SBarry Smith CSR format the local rows. 3549dfb205c3SBarry Smith 3550d083f849SBarry Smith Collective 3551dfb205c3SBarry Smith 3552dfb205c3SBarry Smith Input Parameters: 3553dfb205c3SBarry Smith + comm - MPI communicator 3554dfb205c3SBarry Smith . bs - the block size, only a block size of 1 is supported 355511a5261eSBarry Smith . m - number of local rows (Cannot be `PETSC_DECIDE`) 3556dfb205c3SBarry Smith . n - This value should be the same as the local size used in creating the 355711a5261eSBarry Smith x vector for the matrix-vector product y = Ax. (or `PETSC_DECIDE` to have 3558dfb205c3SBarry Smith calculated if N is given) For square matrices n is almost always m. 355911a5261eSBarry Smith . M - number of global rows (or `PETSC_DETERMINE` to have calculated if m is given) 356011a5261eSBarry Smith . N - number of global columns (or `PETSC_DETERMINE` to have calculated if n is given) 3561483a2f95SBarry Smith . i - row indices; that is i[0] = 0, i[row] = i[row-1] + number of block elements in that rowth block row of the matrix 3562dfb205c3SBarry Smith . j - column indices 3563dfb205c3SBarry Smith - a - matrix values 3564dfb205c3SBarry Smith 3565dfb205c3SBarry Smith Output Parameter: 3566dfb205c3SBarry Smith . mat - the matrix 3567dfb205c3SBarry Smith 3568dfb205c3SBarry Smith Level: intermediate 3569dfb205c3SBarry Smith 3570dfb205c3SBarry Smith Notes: 357167be906fSBarry Smith The `i`, `j`, and `a` arrays ARE copied by this routine into the internal format used by PETSc; 3572dfb205c3SBarry Smith thus you CANNOT change the matrix entries by changing the values of a[] after you have 357311a5261eSBarry Smith called this routine. Use `MatCreateMPIAIJWithSplitArrays()` to avoid needing to copy the arrays. 3574dfb205c3SBarry Smith 35753adadaf3SJed Brown The order of the entries in values is the same as the block compressed sparse row storage format; that is, it is 35763adadaf3SJed Brown the same as a three dimensional array in Fortran values(bs,bs,nnz) that contains the first column of the first 35773adadaf3SJed Brown block, followed by the second column of the first block etc etc. That is, the blocks are contiguous in memory 35783adadaf3SJed Brown with column-major ordering within blocks. 35793adadaf3SJed Brown 358067be906fSBarry Smith The `i` and `j` indices are 0 based, and i indices are indices corresponding to the local `j` array. 3581dfb205c3SBarry Smith 358267be906fSBarry Smith .seealso: `Mat`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`, 35837d2c085eSPierre Jolivet `MATMPIAIJ`, `MatCreateAIJ()`, `MatCreateMPIAIJWithSplitArrays()` 3584dfb205c3SBarry Smith @*/ 3585d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIBAIJWithArrays(MPI_Comm comm, PetscInt bs, PetscInt m, PetscInt n, PetscInt M, PetscInt N, const PetscInt i[], const PetscInt j[], const PetscScalar a[], Mat *mat) 3586d71ae5a4SJacob Faibussowitsch { 3587dfb205c3SBarry Smith PetscFunctionBegin; 35885f80ce2aSJacob Faibussowitsch PetscCheck(!i[0], PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "i (row indices) must start with 0"); 35895f80ce2aSJacob Faibussowitsch PetscCheck(m >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "local number of rows (m) cannot be PETSC_DECIDE, or negative"); 35909566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, mat)); 35919566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*mat, m, n, M, N)); 35929566063dSJacob Faibussowitsch PetscCall(MatSetType(*mat, MATMPIBAIJ)); 35939566063dSJacob Faibussowitsch PetscCall(MatSetBlockSize(*mat, bs)); 35949566063dSJacob Faibussowitsch PetscCall(MatSetUp(*mat)); 35959566063dSJacob Faibussowitsch PetscCall(MatSetOption(*mat, MAT_ROW_ORIENTED, PETSC_FALSE)); 35969566063dSJacob Faibussowitsch PetscCall(MatMPIBAIJSetPreallocationCSR(*mat, bs, i, j, a)); 35979566063dSJacob Faibussowitsch PetscCall(MatSetOption(*mat, MAT_ROW_ORIENTED, PETSC_TRUE)); 35983ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3599dfb205c3SBarry Smith } 3600e561ad89SHong Zhang 3601d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIMatConcatenateSeqMat_MPIBAIJ(MPI_Comm comm, Mat inmat, PetscInt n, MatReuse scall, Mat *outmat) 3602d71ae5a4SJacob Faibussowitsch { 3603bd153df0SHong Zhang PetscInt m, N, i, rstart, nnz, Ii, bs, cbs; 3604bd153df0SHong Zhang PetscInt *indx; 3605bd153df0SHong Zhang PetscScalar *values; 3606e561ad89SHong Zhang 3607e561ad89SHong Zhang PetscFunctionBegin; 36089566063dSJacob Faibussowitsch PetscCall(MatGetSize(inmat, &m, &N)); 3609bd153df0SHong Zhang if (scall == MAT_INITIAL_MATRIX) { /* symbolic phase */ 3610bd153df0SHong Zhang Mat_SeqBAIJ *a = (Mat_SeqBAIJ *)inmat->data; 36112c6ba4edSHong Zhang PetscInt *dnz, *onz, mbs, Nbs, nbs; 3612bd153df0SHong Zhang PetscInt *bindx, rmax = a->rmax, j; 361377f764caSHong Zhang PetscMPIInt rank, size; 3614e561ad89SHong Zhang 36159566063dSJacob Faibussowitsch PetscCall(MatGetBlockSizes(inmat, &bs, &cbs)); 36169371c9d4SSatish Balay mbs = m / bs; 36179371c9d4SSatish Balay Nbs = N / cbs; 361848a46eb9SPierre Jolivet if (n == PETSC_DECIDE) PetscCall(PetscSplitOwnershipBlock(comm, cbs, &n, &N)); 3619da91a574SPierre Jolivet nbs = n / cbs; 3620e561ad89SHong Zhang 36219566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(rmax, &bindx)); 3622d0609cedSBarry Smith MatPreallocateBegin(comm, mbs, nbs, dnz, onz); /* inline function, output __end and __rstart are used below */ 362377f764caSHong Zhang 36249566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 36259566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &size)); 362677f764caSHong Zhang if (rank == size - 1) { 362777f764caSHong Zhang /* Check sum(nbs) = Nbs */ 36285f80ce2aSJacob Faibussowitsch PetscCheck(__end == Nbs, PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "Sum of local block columns %" PetscInt_FMT " != global block columns %" PetscInt_FMT, __end, Nbs); 362977f764caSHong Zhang } 363077f764caSHong Zhang 3631d0609cedSBarry Smith rstart = __rstart; /* block rstart of *outmat; see inline function MatPreallocateBegin */ 3632bd153df0SHong Zhang for (i = 0; i < mbs; i++) { 36339566063dSJacob Faibussowitsch PetscCall(MatGetRow_SeqBAIJ(inmat, i * bs, &nnz, &indx, NULL)); /* non-blocked nnz and indx */ 3634647a6520SHong Zhang nnz = nnz / bs; 3635647a6520SHong Zhang for (j = 0; j < nnz; j++) bindx[j] = indx[j * bs] / bs; 36369566063dSJacob Faibussowitsch PetscCall(MatPreallocateSet(i + rstart, nnz, bindx, dnz, onz)); 36379566063dSJacob Faibussowitsch PetscCall(MatRestoreRow_SeqBAIJ(inmat, i * bs, &nnz, &indx, NULL)); 3638e561ad89SHong Zhang } 36399566063dSJacob Faibussowitsch PetscCall(PetscFree(bindx)); 3640e561ad89SHong Zhang 36419566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, outmat)); 36429566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*outmat, m, n, PETSC_DETERMINE, PETSC_DETERMINE)); 36439566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizes(*outmat, bs, cbs)); 36449566063dSJacob Faibussowitsch PetscCall(MatSetType(*outmat, MATBAIJ)); 36459566063dSJacob Faibussowitsch PetscCall(MatSeqBAIJSetPreallocation(*outmat, bs, 0, dnz)); 36469566063dSJacob Faibussowitsch PetscCall(MatMPIBAIJSetPreallocation(*outmat, bs, 0, dnz, 0, onz)); 3647d0609cedSBarry Smith MatPreallocateEnd(dnz, onz); 36489566063dSJacob Faibussowitsch PetscCall(MatSetOption(*outmat, MAT_NO_OFF_PROC_ENTRIES, PETSC_TRUE)); 3649e561ad89SHong Zhang } 3650e561ad89SHong Zhang 3651bd153df0SHong Zhang /* numeric phase */ 36529566063dSJacob Faibussowitsch PetscCall(MatGetBlockSizes(inmat, &bs, &cbs)); 36539566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(*outmat, &rstart, NULL)); 3654e561ad89SHong Zhang 3655e561ad89SHong Zhang for (i = 0; i < m; i++) { 36569566063dSJacob Faibussowitsch PetscCall(MatGetRow_SeqBAIJ(inmat, i, &nnz, &indx, &values)); 3657e561ad89SHong Zhang Ii = i + rstart; 36589566063dSJacob Faibussowitsch PetscCall(MatSetValues(*outmat, 1, &Ii, nnz, indx, values, INSERT_VALUES)); 36599566063dSJacob Faibussowitsch PetscCall(MatRestoreRow_SeqBAIJ(inmat, i, &nnz, &indx, &values)); 3660e561ad89SHong Zhang } 36619566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(*outmat, MAT_FINAL_ASSEMBLY)); 36629566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(*outmat, MAT_FINAL_ASSEMBLY)); 36633ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3664e561ad89SHong Zhang } 3665