xref: /petsc/src/mat/impls/baij/mpi/mpibaij.c (revision 905e6a2f0f49659307fca631a274f7b99e9427ee)
179bdfe76SSatish Balay #ifndef lint
2*905e6a2fSBarry Smith static char vcid[] = "$Id: mpibaij.c,v 1.18 1996/08/04 23:12:57 bsmith Exp bsmith $";
379bdfe76SSatish Balay #endif
479bdfe76SSatish Balay 
579bdfe76SSatish Balay #include "mpibaij.h"
6c16cb8f2SBarry Smith #include "src/vec/vecimpl.h"
779bdfe76SSatish Balay 
857b952d6SSatish Balay #include "draw.h"
957b952d6SSatish Balay #include "pinclude/pviewer.h"
1057b952d6SSatish Balay 
1157b952d6SSatish Balay extern int MatSetUpMultiply_MPIBAIJ(Mat);
1257b952d6SSatish Balay extern int DisAssemble_MPIBAIJ(Mat);
13d212a18eSSatish Balay extern int MatIncreaseOverlap_MPIBAIJ(Mat,int,IS *,int);
14d212a18eSSatish Balay extern int MatGetSubMatrices_MPIBAIJ(Mat,int,IS *,IS *,MatGetSubMatrixCall,Mat **);
1593bc47c4SSatish Balay extern int MatLUFactorSymbolic_MPIBAIJ(Mat,IS,IS,double,Mat *);
1693bc47c4SSatish Balay extern int MatLUFactorNumeric_MPIBAIJ(Mat,Mat *);
1793bc47c4SSatish Balay extern int MatLUFactor_MPIBAIJ(Mat,IS,IS,double);
1893bc47c4SSatish Balay extern int MatSolve_MPIBAIJ(Mat,Vec,Vec);
1993bc47c4SSatish Balay extern int MatSolveAdd_MPIBAIJ(Mat,Vec,Vec,Vec);
2093bc47c4SSatish Balay extern int MatSolveTrans_MPIBAIJ(Mat,Vec,Vec);
2193bc47c4SSatish Balay extern int MatSolveTransAdd_MPIBAIJ(Mat,Vec,Vec,Vec);
2293bc47c4SSatish Balay extern int MatILUFactorSymbolic_MPIBAIJ(Mat,IS,IS,double,int,Mat *);
2357b952d6SSatish Balay 
2457b952d6SSatish Balay /* local utility routine that creates a mapping from the global column
2557b952d6SSatish Balay number to the local number in the off-diagonal part of the local
2657b952d6SSatish Balay storage of the matrix.  This is done in a non scable way since the
2757b952d6SSatish Balay length of colmap equals the global matrix length.
2857b952d6SSatish Balay */
2957b952d6SSatish Balay static int CreateColmap_MPIBAIJ_Private(Mat mat)
3057b952d6SSatish Balay {
3157b952d6SSatish Balay   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *) mat->data;
3257b952d6SSatish Balay   Mat_SeqBAIJ *B = (Mat_SeqBAIJ*) baij->B->data;
3357b952d6SSatish Balay   int        nbs = B->nbs,i;
3457b952d6SSatish Balay 
3557b952d6SSatish Balay   baij->colmap = (int *) PetscMalloc(baij->Nbs*sizeof(int));CHKPTRQ(baij->colmap);
3657b952d6SSatish Balay   PLogObjectMemory(mat,baij->Nbs*sizeof(int));
3757b952d6SSatish Balay   PetscMemzero(baij->colmap,baij->Nbs*sizeof(int));
38*905e6a2fSBarry Smith   for ( i=0; i<nbs; i++ ) baij->colmap[baij->garray[i]] = i + 1;
3957b952d6SSatish Balay   return 0;
4057b952d6SSatish Balay }
4157b952d6SSatish Balay 
4257b952d6SSatish Balay 
43acdf5bf4SSatish Balay static int MatGetReordering_MPIBAIJ(Mat mat,MatReordering type,IS *rperm,IS *cperm)
4457b952d6SSatish Balay {
4557b952d6SSatish Balay   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *) mat->data;
4657b952d6SSatish Balay   int         ierr;
4757b952d6SSatish Balay   if (baij->size == 1) {
4857b952d6SSatish Balay     ierr = MatGetReordering(baij->A,type,rperm,cperm); CHKERRQ(ierr);
4957b952d6SSatish Balay   } else SETERRQ(1,"MatGetReordering_MPIBAIJ:not supported in parallel");
5057b952d6SSatish Balay   return 0;
5157b952d6SSatish Balay }
5257b952d6SSatish Balay 
5357b952d6SSatish Balay static int MatSetValues_MPIBAIJ(Mat mat,int m,int *im,int n,int *in,Scalar *v,InsertMode addv)
5457b952d6SSatish Balay {
5557b952d6SSatish Balay   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *) mat->data;
5657b952d6SSatish Balay   Scalar      value;
5757b952d6SSatish Balay   int         ierr,i,j, rstart = baij->rstart, rend = baij->rend;
5857b952d6SSatish Balay   int         cstart = baij->cstart, cend = baij->cend,row,col;
5957b952d6SSatish Balay   int         roworiented = baij->roworiented,rstart_orig,rend_orig;
6057b952d6SSatish Balay   int         cstart_orig,cend_orig,bs=baij->bs;
6157b952d6SSatish Balay 
6257b952d6SSatish Balay   if (baij->insertmode != NOT_SET_VALUES && baij->insertmode != addv) {
6357b952d6SSatish Balay     SETERRQ(1,"MatSetValues_MPIBAIJ:Cannot mix inserts and adds");
6457b952d6SSatish Balay   }
6557b952d6SSatish Balay   baij->insertmode = addv;
6657b952d6SSatish Balay   rstart_orig = rstart*bs;
6757b952d6SSatish Balay   rend_orig   = rend*bs;
6857b952d6SSatish Balay   cstart_orig = cstart*bs;
6957b952d6SSatish Balay   cend_orig   = cend*bs;
7057b952d6SSatish Balay   for ( i=0; i<m; i++ ) {
7157b952d6SSatish Balay     if (im[i] < 0) SETERRQ(1,"MatSetValues_MPIBAIJ:Negative row");
7257b952d6SSatish Balay     if (im[i] >= baij->M) SETERRQ(1,"MatSetValues_MPIBAIJ:Row too large");
7357b952d6SSatish Balay     if (im[i] >= rstart_orig && im[i] < rend_orig) {
7457b952d6SSatish Balay       row = im[i] - rstart_orig;
7557b952d6SSatish Balay       for ( j=0; j<n; j++ ) {
7657b952d6SSatish Balay         if (in[j] < 0) SETERRQ(1,"MatSetValues_MPIBAIJ:Negative column");
7757b952d6SSatish Balay         if (in[j] >= baij->N) SETERRQ(1,"MatSetValues_MPIBAIJ:Col too large");
7857b952d6SSatish Balay         if (in[j] >= cstart_orig && in[j] < cend_orig){
7957b952d6SSatish Balay           col = in[j] - cstart_orig;
8057b952d6SSatish Balay           if (roworiented) value = v[i*n+j]; else value = v[i+j*m];
8157b952d6SSatish Balay           ierr = MatSetValues(baij->A,1,&row,1,&col,&value,addv);CHKERRQ(ierr);
8257b952d6SSatish Balay         }
8357b952d6SSatish Balay         else {
8457b952d6SSatish Balay           if (mat->was_assembled) {
85*905e6a2fSBarry Smith             if (!baij->colmap) {
86*905e6a2fSBarry Smith               ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
87*905e6a2fSBarry Smith             }
88*905e6a2fSBarry Smith             col = baij->colmap[in[j]/bs] - 1 + in[j]%bs;
8957b952d6SSatish Balay             if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) {
9057b952d6SSatish Balay               ierr = DisAssemble_MPIBAIJ(mat); CHKERRQ(ierr);
9157b952d6SSatish Balay               col =  in[j];
9257b952d6SSatish Balay             }
9357b952d6SSatish Balay           }
9457b952d6SSatish Balay           else col = in[j];
9557b952d6SSatish Balay           if (roworiented) value = v[i*n+j]; else value = v[i+j*m];
9657b952d6SSatish Balay           ierr = MatSetValues(baij->B,1,&row,1,&col,&value,addv);CHKERRQ(ierr);
9757b952d6SSatish Balay         }
9857b952d6SSatish Balay       }
9957b952d6SSatish Balay     }
10057b952d6SSatish Balay     else {
10157b952d6SSatish Balay       if (roworiented) {
10257b952d6SSatish Balay         ierr = StashValues_Private(&baij->stash,im[i],n,in,v+i*n,addv);CHKERRQ(ierr);
10357b952d6SSatish Balay       }
10457b952d6SSatish Balay       else {
10557b952d6SSatish Balay         row = im[i];
10657b952d6SSatish Balay         for ( j=0; j<n; j++ ) {
10757b952d6SSatish Balay           ierr = StashValues_Private(&baij->stash,row,1,in+j,v+i+j*m,addv);CHKERRQ(ierr);
10857b952d6SSatish Balay         }
10957b952d6SSatish Balay       }
11057b952d6SSatish Balay     }
11157b952d6SSatish Balay   }
11257b952d6SSatish Balay   return 0;
11357b952d6SSatish Balay }
11457b952d6SSatish Balay 
115d6de1c52SSatish Balay static int MatGetValues_MPIBAIJ(Mat mat,int m,int *idxm,int n,int *idxn,Scalar *v)
116d6de1c52SSatish Balay {
117d6de1c52SSatish Balay   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *) mat->data;
118d6de1c52SSatish Balay   int        bs=baij->bs,ierr,i,j, bsrstart = baij->rstart*bs, bsrend = baij->rend*bs;
119d6de1c52SSatish Balay   int        bscstart = baij->cstart*bs, bscend = baij->cend*bs,row,col;
120d6de1c52SSatish Balay 
121d6de1c52SSatish Balay   for ( i=0; i<m; i++ ) {
122d6de1c52SSatish Balay     if (idxm[i] < 0) SETERRQ(1,"MatGetValues_MPIBAIJ:Negative row");
123d6de1c52SSatish Balay     if (idxm[i] >= baij->M) SETERRQ(1,"MatGetValues_MPIBAIJ:Row too large");
124d6de1c52SSatish Balay     if (idxm[i] >= bsrstart && idxm[i] < bsrend) {
125d6de1c52SSatish Balay       row = idxm[i] - bsrstart;
126d6de1c52SSatish Balay       for ( j=0; j<n; j++ ) {
127d6de1c52SSatish Balay         if (idxn[j] < 0) SETERRQ(1,"MatGetValues_MPIBAIJ:Negative column");
128d6de1c52SSatish Balay         if (idxn[j] >= baij->N) SETERRQ(1,"MatGetValues_MPIBAIJ:Col too large");
129d6de1c52SSatish Balay         if (idxn[j] >= bscstart && idxn[j] < bscend){
130d6de1c52SSatish Balay           col = idxn[j] - bscstart;
131d6de1c52SSatish Balay           ierr = MatGetValues(baij->A,1,&row,1,&col,v+i*n+j); CHKERRQ(ierr);
132d6de1c52SSatish Balay         }
133d6de1c52SSatish Balay         else {
134*905e6a2fSBarry Smith           if (!baij->colmap) {
135*905e6a2fSBarry Smith             ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
136*905e6a2fSBarry Smith           }
137*905e6a2fSBarry Smith           if (baij->garray[baij->colmap[idxn[j]/bs]-1] != idxn[j]/bs) *(v+i*n+j) = 0.0;
138d9d09a02SSatish Balay           else {
139*905e6a2fSBarry Smith             col  = (baij->colmap[idxn[j]/bs]-1)*bs + idxn[j]%bs;
140d6de1c52SSatish Balay             ierr = MatGetValues(baij->B,1,&row,1,&col,v+i*n+j); CHKERRQ(ierr);
141d6de1c52SSatish Balay           }
142d6de1c52SSatish Balay         }
143d6de1c52SSatish Balay       }
144d9d09a02SSatish Balay     }
145d6de1c52SSatish Balay     else {
146d6de1c52SSatish Balay       SETERRQ(1,"MatGetValues_MPIBAIJ:Only local values currently supported");
147d6de1c52SSatish Balay     }
148d6de1c52SSatish Balay   }
149d6de1c52SSatish Balay   return 0;
150d6de1c52SSatish Balay }
151d6de1c52SSatish Balay 
152d6de1c52SSatish Balay static int MatNorm_MPIBAIJ(Mat mat,NormType type,double *norm)
153d6de1c52SSatish Balay {
154d6de1c52SSatish Balay   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *) mat->data;
155d6de1c52SSatish Balay   Mat_SeqBAIJ *amat = (Mat_SeqBAIJ*) baij->A->data, *bmat = (Mat_SeqBAIJ*) baij->B->data;
156acdf5bf4SSatish Balay   int        ierr, i,bs2=baij->bs2;
157d6de1c52SSatish Balay   double     sum = 0.0;
158d6de1c52SSatish Balay   Scalar     *v;
159d6de1c52SSatish Balay 
160d6de1c52SSatish Balay   if (baij->size == 1) {
161d6de1c52SSatish Balay     ierr =  MatNorm(baij->A,type,norm); CHKERRQ(ierr);
162d6de1c52SSatish Balay   } else {
163d6de1c52SSatish Balay     if (type == NORM_FROBENIUS) {
164d6de1c52SSatish Balay       v = amat->a;
165d6de1c52SSatish Balay       for (i=0; i<amat->nz*bs2; i++ ) {
166d6de1c52SSatish Balay #if defined(PETSC_COMPLEX)
167d6de1c52SSatish Balay         sum += real(conj(*v)*(*v)); v++;
168d6de1c52SSatish Balay #else
169d6de1c52SSatish Balay         sum += (*v)*(*v); v++;
170d6de1c52SSatish Balay #endif
171d6de1c52SSatish Balay       }
172d6de1c52SSatish Balay       v = bmat->a;
173d6de1c52SSatish Balay       for (i=0; i<bmat->nz*bs2; i++ ) {
174d6de1c52SSatish Balay #if defined(PETSC_COMPLEX)
175d6de1c52SSatish Balay         sum += real(conj(*v)*(*v)); v++;
176d6de1c52SSatish Balay #else
177d6de1c52SSatish Balay         sum += (*v)*(*v); v++;
178d6de1c52SSatish Balay #endif
179d6de1c52SSatish Balay       }
180d6de1c52SSatish Balay       MPI_Allreduce(&sum,norm,1,MPI_DOUBLE,MPI_SUM,mat->comm);
181d6de1c52SSatish Balay       *norm = sqrt(*norm);
182d6de1c52SSatish Balay     }
183acdf5bf4SSatish Balay     else
184acdf5bf4SSatish Balay       SETERRQ(1,"MatNorm_SeqBAIJ:No support for this norm yet");
185d6de1c52SSatish Balay   }
186d6de1c52SSatish Balay   return 0;
187d6de1c52SSatish Balay }
18857b952d6SSatish Balay 
18957b952d6SSatish Balay static int MatAssemblyBegin_MPIBAIJ(Mat mat,MatAssemblyType mode)
19057b952d6SSatish Balay {
19157b952d6SSatish Balay   Mat_MPIBAIJ  *baij = (Mat_MPIBAIJ *) mat->data;
19257b952d6SSatish Balay   MPI_Comm    comm = mat->comm;
19357b952d6SSatish Balay   int         size = baij->size, *owners = baij->rowners,bs=baij->bs;
19457b952d6SSatish Balay   int         rank = baij->rank,tag = mat->tag, *owner,*starts,count,ierr;
19557b952d6SSatish Balay   MPI_Request *send_waits,*recv_waits;
19657b952d6SSatish Balay   int         *nprocs,i,j,idx,*procs,nsends,nreceives,nmax,*work;
19757b952d6SSatish Balay   InsertMode  addv;
19857b952d6SSatish Balay   Scalar      *rvalues,*svalues;
19957b952d6SSatish Balay 
20057b952d6SSatish Balay   /* make sure all processors are either in INSERTMODE or ADDMODE */
20157b952d6SSatish Balay   MPI_Allreduce(&baij->insertmode,&addv,1,MPI_INT,MPI_BOR,comm);
20257b952d6SSatish Balay   if (addv == (ADD_VALUES|INSERT_VALUES)) {
20357b952d6SSatish Balay     SETERRQ(1,"MatAssemblyBegin_MPIBAIJ:Some processors inserted others added");
20457b952d6SSatish Balay   }
20557b952d6SSatish Balay   baij->insertmode = addv; /* in case this processor had no cache */
20657b952d6SSatish Balay 
20757b952d6SSatish Balay   /*  first count number of contributors to each processor */
20857b952d6SSatish Balay   nprocs = (int *) PetscMalloc( 2*size*sizeof(int) ); CHKPTRQ(nprocs);
20957b952d6SSatish Balay   PetscMemzero(nprocs,2*size*sizeof(int)); procs = nprocs + size;
21057b952d6SSatish Balay   owner = (int *) PetscMalloc( (baij->stash.n+1)*sizeof(int) ); CHKPTRQ(owner);
21157b952d6SSatish Balay   for ( i=0; i<baij->stash.n; i++ ) {
21257b952d6SSatish Balay     idx = baij->stash.idx[i];
21357b952d6SSatish Balay     for ( j=0; j<size; j++ ) {
21457b952d6SSatish Balay       if (idx >= owners[j]*bs && idx < owners[j+1]*bs) {
21557b952d6SSatish Balay         nprocs[j]++; procs[j] = 1; owner[i] = j; break;
21657b952d6SSatish Balay       }
21757b952d6SSatish Balay     }
21857b952d6SSatish Balay   }
21957b952d6SSatish Balay   nsends = 0;  for ( i=0; i<size; i++ ) { nsends += procs[i];}
22057b952d6SSatish Balay 
22157b952d6SSatish Balay   /* inform other processors of number of messages and max length*/
22257b952d6SSatish Balay   work = (int *) PetscMalloc( size*sizeof(int) ); CHKPTRQ(work);
22357b952d6SSatish Balay   MPI_Allreduce(procs, work,size,MPI_INT,MPI_SUM,comm);
22457b952d6SSatish Balay   nreceives = work[rank];
22557b952d6SSatish Balay   MPI_Allreduce( nprocs, work,size,MPI_INT,MPI_MAX,comm);
22657b952d6SSatish Balay   nmax = work[rank];
22757b952d6SSatish Balay   PetscFree(work);
22857b952d6SSatish Balay 
22957b952d6SSatish Balay   /* post receives:
23057b952d6SSatish Balay        1) each message will consist of ordered pairs
23157b952d6SSatish Balay      (global index,value) we store the global index as a double
23257b952d6SSatish Balay      to simplify the message passing.
23357b952d6SSatish Balay        2) since we don't know how long each individual message is we
23457b952d6SSatish Balay      allocate the largest needed buffer for each receive. Potentially
23557b952d6SSatish Balay      this is a lot of wasted space.
23657b952d6SSatish Balay 
23757b952d6SSatish Balay 
23857b952d6SSatish Balay        This could be done better.
23957b952d6SSatish Balay   */
24057b952d6SSatish Balay   rvalues = (Scalar *) PetscMalloc(3*(nreceives+1)*(nmax+1)*sizeof(Scalar));
24157b952d6SSatish Balay   CHKPTRQ(rvalues);
24257b952d6SSatish Balay   recv_waits = (MPI_Request *) PetscMalloc((nreceives+1)*sizeof(MPI_Request));
24357b952d6SSatish Balay   CHKPTRQ(recv_waits);
24457b952d6SSatish Balay   for ( i=0; i<nreceives; i++ ) {
24557b952d6SSatish Balay     MPI_Irecv(rvalues+3*nmax*i,3*nmax,MPIU_SCALAR,MPI_ANY_SOURCE,tag,
24657b952d6SSatish Balay               comm,recv_waits+i);
24757b952d6SSatish Balay   }
24857b952d6SSatish Balay 
24957b952d6SSatish Balay   /* do sends:
25057b952d6SSatish Balay       1) starts[i] gives the starting index in svalues for stuff going to
25157b952d6SSatish Balay          the ith processor
25257b952d6SSatish Balay   */
25357b952d6SSatish Balay   svalues = (Scalar *) PetscMalloc(3*(baij->stash.n+1)*sizeof(Scalar));CHKPTRQ(svalues);
25457b952d6SSatish Balay   send_waits = (MPI_Request *) PetscMalloc( (nsends+1)*sizeof(MPI_Request));
25557b952d6SSatish Balay   CHKPTRQ(send_waits);
25657b952d6SSatish Balay   starts = (int *) PetscMalloc( size*sizeof(int) ); CHKPTRQ(starts);
25757b952d6SSatish Balay   starts[0] = 0;
25857b952d6SSatish Balay   for ( i=1; i<size; i++ ) { starts[i] = starts[i-1] + nprocs[i-1];}
25957b952d6SSatish Balay   for ( i=0; i<baij->stash.n; i++ ) {
26057b952d6SSatish Balay     svalues[3*starts[owner[i]]]       = (Scalar)  baij->stash.idx[i];
26157b952d6SSatish Balay     svalues[3*starts[owner[i]]+1]     = (Scalar)  baij->stash.idy[i];
26257b952d6SSatish Balay     svalues[3*(starts[owner[i]]++)+2] =  baij->stash.array[i];
26357b952d6SSatish Balay   }
26457b952d6SSatish Balay   PetscFree(owner);
26557b952d6SSatish Balay   starts[0] = 0;
26657b952d6SSatish Balay   for ( i=1; i<size; i++ ) { starts[i] = starts[i-1] + nprocs[i-1];}
26757b952d6SSatish Balay   count = 0;
26857b952d6SSatish Balay   for ( i=0; i<size; i++ ) {
26957b952d6SSatish Balay     if (procs[i]) {
27057b952d6SSatish Balay       MPI_Isend(svalues+3*starts[i],3*nprocs[i],MPIU_SCALAR,i,tag,
27157b952d6SSatish Balay                 comm,send_waits+count++);
27257b952d6SSatish Balay     }
27357b952d6SSatish Balay   }
27457b952d6SSatish Balay   PetscFree(starts); PetscFree(nprocs);
27557b952d6SSatish Balay 
27657b952d6SSatish Balay   /* Free cache space */
27757b952d6SSatish Balay   PLogInfo(0,"[%d]MatAssemblyBegin_MPIBAIJ:Number of off processor values %d\n",rank,baij->stash.n);
27857b952d6SSatish Balay   ierr = StashDestroy_Private(&baij->stash); CHKERRQ(ierr);
27957b952d6SSatish Balay 
28057b952d6SSatish Balay   baij->svalues    = svalues;    baij->rvalues    = rvalues;
28157b952d6SSatish Balay   baij->nsends     = nsends;     baij->nrecvs     = nreceives;
28257b952d6SSatish Balay   baij->send_waits = send_waits; baij->recv_waits = recv_waits;
28357b952d6SSatish Balay   baij->rmax       = nmax;
28457b952d6SSatish Balay 
28557b952d6SSatish Balay   return 0;
28657b952d6SSatish Balay }
28757b952d6SSatish Balay 
28857b952d6SSatish Balay 
28957b952d6SSatish Balay static int MatAssemblyEnd_MPIBAIJ(Mat mat,MatAssemblyType mode)
29057b952d6SSatish Balay {
29157b952d6SSatish Balay   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *) mat->data;
29257b952d6SSatish Balay   MPI_Status  *send_status,recv_status;
29357b952d6SSatish Balay   int         imdex,nrecvs = baij->nrecvs, count = nrecvs, i, n, ierr;
29457b952d6SSatish Balay   int         bs=baij->bs,row,col,other_disassembled;
29557b952d6SSatish Balay   Scalar      *values,val;
29657b952d6SSatish Balay   InsertMode  addv = baij->insertmode;
29757b952d6SSatish Balay 
29857b952d6SSatish Balay   /*  wait on receives */
29957b952d6SSatish Balay   while (count) {
30057b952d6SSatish Balay     MPI_Waitany(nrecvs,baij->recv_waits,&imdex,&recv_status);
30157b952d6SSatish Balay     /* unpack receives into our local space */
30257b952d6SSatish Balay     values = baij->rvalues + 3*imdex*baij->rmax;
30357b952d6SSatish Balay     MPI_Get_count(&recv_status,MPIU_SCALAR,&n);
30457b952d6SSatish Balay     n = n/3;
30557b952d6SSatish Balay     for ( i=0; i<n; i++ ) {
30657b952d6SSatish Balay       row = (int) PetscReal(values[3*i]) - baij->rstart*bs;
30757b952d6SSatish Balay       col = (int) PetscReal(values[3*i+1]);
30857b952d6SSatish Balay       val = values[3*i+2];
30957b952d6SSatish Balay       if (col >= baij->cstart*bs && col < baij->cend*bs) {
31057b952d6SSatish Balay         col -= baij->cstart*bs;
31157b952d6SSatish Balay         MatSetValues(baij->A,1,&row,1,&col,&val,addv);
31257b952d6SSatish Balay       }
31357b952d6SSatish Balay       else {
31457b952d6SSatish Balay         if (mat->was_assembled) {
315*905e6a2fSBarry Smith           if (!baij->colmap) {
316*905e6a2fSBarry Smith             ierr = CreateColmap_MPIBAIJ_Private(mat); CHKERRQ(ierr);
317*905e6a2fSBarry Smith           }
318*905e6a2fSBarry Smith           col = (baij->colmap[col/bs]-1)*bs + col%bs;
31957b952d6SSatish Balay           if (col < 0  && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) {
32057b952d6SSatish Balay             ierr = DisAssemble_MPIBAIJ(mat); CHKERRQ(ierr);
32157b952d6SSatish Balay             col = (int) PetscReal(values[3*i+1]);
32257b952d6SSatish Balay           }
32357b952d6SSatish Balay         }
32457b952d6SSatish Balay         MatSetValues(baij->B,1,&row,1,&col,&val,addv);
32557b952d6SSatish Balay       }
32657b952d6SSatish Balay     }
32757b952d6SSatish Balay     count--;
32857b952d6SSatish Balay   }
32957b952d6SSatish Balay   PetscFree(baij->recv_waits); PetscFree(baij->rvalues);
33057b952d6SSatish Balay 
33157b952d6SSatish Balay   /* wait on sends */
33257b952d6SSatish Balay   if (baij->nsends) {
33357b952d6SSatish Balay     send_status = (MPI_Status *) PetscMalloc(baij->nsends*sizeof(MPI_Status));
33457b952d6SSatish Balay     CHKPTRQ(send_status);
33557b952d6SSatish Balay     MPI_Waitall(baij->nsends,baij->send_waits,send_status);
33657b952d6SSatish Balay     PetscFree(send_status);
33757b952d6SSatish Balay   }
33857b952d6SSatish Balay   PetscFree(baij->send_waits); PetscFree(baij->svalues);
33957b952d6SSatish Balay 
34057b952d6SSatish Balay   baij->insertmode = NOT_SET_VALUES;
34157b952d6SSatish Balay   ierr = MatAssemblyBegin(baij->A,mode); CHKERRQ(ierr);
34257b952d6SSatish Balay   ierr = MatAssemblyEnd(baij->A,mode); CHKERRQ(ierr);
34357b952d6SSatish Balay 
34457b952d6SSatish Balay   /* determine if any processor has disassembled, if so we must
34557b952d6SSatish Balay      also disassemble ourselfs, in order that we may reassemble. */
34657b952d6SSatish Balay   MPI_Allreduce(&mat->was_assembled,&other_disassembled,1,MPI_INT,MPI_PROD,mat->comm);
34757b952d6SSatish Balay   if (mat->was_assembled && !other_disassembled) {
34857b952d6SSatish Balay     ierr = DisAssemble_MPIBAIJ(mat); CHKERRQ(ierr);
34957b952d6SSatish Balay   }
35057b952d6SSatish Balay 
3516d4a8577SBarry Smith   if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) {
35257b952d6SSatish Balay     ierr = MatSetUpMultiply_MPIBAIJ(mat); CHKERRQ(ierr);
35357b952d6SSatish Balay   }
35457b952d6SSatish Balay   ierr = MatAssemblyBegin(baij->B,mode); CHKERRQ(ierr);
35557b952d6SSatish Balay   ierr = MatAssemblyEnd(baij->B,mode); CHKERRQ(ierr);
35657b952d6SSatish Balay 
35757b952d6SSatish Balay   if (baij->rowvalues) {PetscFree(baij->rowvalues); baij->rowvalues = 0;}
35857b952d6SSatish Balay   return 0;
35957b952d6SSatish Balay }
36057b952d6SSatish Balay 
36157b952d6SSatish Balay static int MatView_MPIBAIJ_Binary(Mat mat,Viewer viewer)
36257b952d6SSatish Balay {
36357b952d6SSatish Balay   Mat_MPIBAIJ  *baij = (Mat_MPIBAIJ *) mat->data;
36457b952d6SSatish Balay   int          ierr;
36557b952d6SSatish Balay 
36657b952d6SSatish Balay   if (baij->size == 1) {
36757b952d6SSatish Balay     ierr = MatView(baij->A,viewer); CHKERRQ(ierr);
36857b952d6SSatish Balay   }
36957b952d6SSatish Balay   else SETERRQ(1,"MatView_MPIBAIJ_Binary:Only uniprocessor output supported");
37057b952d6SSatish Balay   return 0;
37157b952d6SSatish Balay }
37257b952d6SSatish Balay 
37357b952d6SSatish Balay static int MatView_MPIBAIJ_ASCIIorDraworMatlab(Mat mat,Viewer viewer)
37457b952d6SSatish Balay {
37557b952d6SSatish Balay   Mat_MPIBAIJ  *baij = (Mat_MPIBAIJ *) mat->data;
376cee3aa6bSSatish Balay   int          ierr, format,rank,bs=baij->bs;
37757b952d6SSatish Balay   FILE         *fd;
37857b952d6SSatish Balay   ViewerType   vtype;
37957b952d6SSatish Balay 
38057b952d6SSatish Balay   ierr = ViewerGetType(viewer,&vtype); CHKERRQ(ierr);
38157b952d6SSatish Balay   if (vtype  == ASCII_FILES_VIEWER || vtype == ASCII_FILE_VIEWER) {
38257b952d6SSatish Balay     ierr = ViewerGetFormat(viewer,&format);
38357b952d6SSatish Balay     if (format == ASCII_FORMAT_INFO_DETAILED) {
38457b952d6SSatish Balay       int nz, nzalloc, mem;
38557b952d6SSatish Balay       MPI_Comm_rank(mat->comm,&rank);
38657b952d6SSatish Balay       ierr = ViewerASCIIGetPointer(viewer,&fd); CHKERRQ(ierr);
38757b952d6SSatish Balay       ierr = MatGetInfo(mat,MAT_LOCAL,&nz,&nzalloc,&mem);
38857b952d6SSatish Balay       PetscSequentialPhaseBegin(mat->comm,1);
38957b952d6SSatish Balay       fprintf(fd,"[%d] Local rows %d nz %d nz alloced %d bs %d mem %d\n",
39057b952d6SSatish Balay               rank,baij->m,nz*bs,nzalloc*bs,baij->bs,mem);
39157b952d6SSatish Balay       ierr = MatGetInfo(baij->A,MAT_LOCAL,&nz,&nzalloc,&mem);
39257b952d6SSatish Balay       fprintf(fd,"[%d] on-diagonal part: nz %d \n",rank,nz*bs);
39357b952d6SSatish Balay       ierr = MatGetInfo(baij->B,MAT_LOCAL,&nz,&nzalloc,&mem);
39457b952d6SSatish Balay       fprintf(fd,"[%d] off-diagonal part: nz %d \n",rank,nz*bs);
39557b952d6SSatish Balay       fflush(fd);
39657b952d6SSatish Balay       PetscSequentialPhaseEnd(mat->comm,1);
39757b952d6SSatish Balay       ierr = VecScatterView(baij->Mvctx,viewer); CHKERRQ(ierr);
39857b952d6SSatish Balay       return 0;
39957b952d6SSatish Balay     }
40057b952d6SSatish Balay     else if (format == ASCII_FORMAT_INFO) {
40157b952d6SSatish Balay       return 0;
40257b952d6SSatish Balay     }
40357b952d6SSatish Balay   }
40457b952d6SSatish Balay 
40557b952d6SSatish Balay   if (vtype == DRAW_VIEWER) {
40657b952d6SSatish Balay     Draw       draw;
40757b952d6SSatish Balay     PetscTruth isnull;
40857b952d6SSatish Balay     ierr = ViewerDrawGetDraw(viewer,&draw); CHKERRQ(ierr);
40957b952d6SSatish Balay     ierr = DrawIsNull(draw,&isnull); CHKERRQ(ierr); if (isnull) return 0;
41057b952d6SSatish Balay   }
41157b952d6SSatish Balay 
41257b952d6SSatish Balay   if (vtype == ASCII_FILE_VIEWER) {
41357b952d6SSatish Balay     ierr = ViewerASCIIGetPointer(viewer,&fd); CHKERRQ(ierr);
41457b952d6SSatish Balay     PetscSequentialPhaseBegin(mat->comm,1);
41557b952d6SSatish Balay     fprintf(fd,"[%d] rows %d starts %d ends %d cols %d starts %d ends %d\n",
41657b952d6SSatish Balay            baij->rank,baij->m,baij->rstart*bs,baij->rend*bs,baij->n,
41757b952d6SSatish Balay             baij->cstart*bs,baij->cend*bs);
41857b952d6SSatish Balay     ierr = MatView(baij->A,viewer); CHKERRQ(ierr);
41957b952d6SSatish Balay     ierr = MatView(baij->B,viewer); CHKERRQ(ierr);
42057b952d6SSatish Balay     fflush(fd);
42157b952d6SSatish Balay     PetscSequentialPhaseEnd(mat->comm,1);
42257b952d6SSatish Balay   }
42357b952d6SSatish Balay   else {
42457b952d6SSatish Balay     int size = baij->size;
42557b952d6SSatish Balay     rank = baij->rank;
42657b952d6SSatish Balay     if (size == 1) {
42757b952d6SSatish Balay       ierr = MatView(baij->A,viewer); CHKERRQ(ierr);
42857b952d6SSatish Balay     }
42957b952d6SSatish Balay     else {
43057b952d6SSatish Balay       /* assemble the entire matrix onto first processor. */
43157b952d6SSatish Balay       Mat         A;
43257b952d6SSatish Balay       Mat_SeqBAIJ *Aloc;
43357b952d6SSatish Balay       int         M = baij->M, N = baij->N,*ai,*aj,row,col,i,j,k,*rvals;
43457b952d6SSatish Balay       int         mbs=baij->mbs;
43557b952d6SSatish Balay       Scalar      *a;
43657b952d6SSatish Balay 
43757b952d6SSatish Balay       if (!rank) {
438cee3aa6bSSatish Balay         ierr = MatCreateMPIBAIJ(mat->comm,baij->bs,M,N,M,N,0,PETSC_NULL,0,PETSC_NULL,&A);
43957b952d6SSatish Balay         CHKERRQ(ierr);
44057b952d6SSatish Balay       }
44157b952d6SSatish Balay       else {
442cee3aa6bSSatish Balay         ierr = MatCreateMPIBAIJ(mat->comm,baij->bs,0,0,M,N,0,PETSC_NULL,0,PETSC_NULL,&A);
44357b952d6SSatish Balay         CHKERRQ(ierr);
44457b952d6SSatish Balay       }
44557b952d6SSatish Balay       PLogObjectParent(mat,A);
44657b952d6SSatish Balay 
44757b952d6SSatish Balay       /* copy over the A part */
44857b952d6SSatish Balay       Aloc = (Mat_SeqBAIJ*) baij->A->data;
44957b952d6SSatish Balay       ai = Aloc->i; aj = Aloc->j; a = Aloc->a;
45057b952d6SSatish Balay       row = baij->rstart;
45157b952d6SSatish Balay       rvals = (int *) PetscMalloc(bs*sizeof(int)); CHKPTRQ(rvals);
45257b952d6SSatish Balay 
45357b952d6SSatish Balay       for ( i=0; i<mbs; i++ ) {
45457b952d6SSatish Balay         rvals[0] = bs*(baij->rstart + i);
45557b952d6SSatish Balay         for ( j=1; j<bs; j++ ) { rvals[j] = rvals[j-1] + 1; }
45657b952d6SSatish Balay         for ( j=ai[i]; j<ai[i+1]; j++ ) {
45757b952d6SSatish Balay           col = (baij->cstart+aj[j])*bs;
45857b952d6SSatish Balay           for (k=0; k<bs; k++ ) {
459cee3aa6bSSatish Balay             ierr = MatSetValues(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr);
460cee3aa6bSSatish Balay             col++; a += bs;
46157b952d6SSatish Balay           }
46257b952d6SSatish Balay         }
46357b952d6SSatish Balay       }
46457b952d6SSatish Balay       /* copy over the B part */
46557b952d6SSatish Balay       Aloc = (Mat_SeqBAIJ*) baij->B->data;
46657b952d6SSatish Balay       ai = Aloc->i; aj = Aloc->j; a = Aloc->a;
46757b952d6SSatish Balay       row = baij->rstart*bs;
46857b952d6SSatish Balay       for ( i=0; i<mbs; i++ ) {
46957b952d6SSatish Balay         rvals[0] = bs*(baij->rstart + i);
47057b952d6SSatish Balay         for ( j=1; j<bs; j++ ) { rvals[j] = rvals[j-1] + 1; }
47157b952d6SSatish Balay         for ( j=ai[i]; j<ai[i+1]; j++ ) {
47257b952d6SSatish Balay           col = baij->garray[aj[j]]*bs;
47357b952d6SSatish Balay           for (k=0; k<bs; k++ ) {
474cee3aa6bSSatish Balay             ierr = MatSetValues(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr);
475cee3aa6bSSatish Balay             col++; a += bs;
47657b952d6SSatish Balay           }
47757b952d6SSatish Balay         }
47857b952d6SSatish Balay       }
47957b952d6SSatish Balay       PetscFree(rvals);
4806d4a8577SBarry Smith       ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY); CHKERRQ(ierr);
4816d4a8577SBarry Smith       ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY); CHKERRQ(ierr);
48257b952d6SSatish Balay       if (!rank) {
48357b952d6SSatish Balay         ierr = MatView(((Mat_MPIBAIJ*)(A->data))->A,viewer); CHKERRQ(ierr);
48457b952d6SSatish Balay       }
48557b952d6SSatish Balay       ierr = MatDestroy(A); CHKERRQ(ierr);
48657b952d6SSatish Balay     }
48757b952d6SSatish Balay   }
48857b952d6SSatish Balay   return 0;
48957b952d6SSatish Balay }
49057b952d6SSatish Balay 
49157b952d6SSatish Balay 
49257b952d6SSatish Balay 
49357b952d6SSatish Balay static int MatView_MPIBAIJ(PetscObject obj,Viewer viewer)
49457b952d6SSatish Balay {
49557b952d6SSatish Balay   Mat         mat = (Mat) obj;
49657b952d6SSatish Balay   int         ierr;
49757b952d6SSatish Balay   ViewerType  vtype;
49857b952d6SSatish Balay 
49957b952d6SSatish Balay   ierr = ViewerGetType(viewer,&vtype); CHKERRQ(ierr);
50057b952d6SSatish Balay   if (vtype == ASCII_FILE_VIEWER || vtype == ASCII_FILES_VIEWER ||
50157b952d6SSatish Balay       vtype == DRAW_VIEWER       || vtype == MATLAB_VIEWER) {
50257b952d6SSatish Balay     ierr = MatView_MPIBAIJ_ASCIIorDraworMatlab(mat,viewer); CHKERRQ(ierr);
50357b952d6SSatish Balay   }
50457b952d6SSatish Balay   else if (vtype == BINARY_FILE_VIEWER) {
50557b952d6SSatish Balay     return MatView_MPIBAIJ_Binary(mat,viewer);
50657b952d6SSatish Balay   }
50757b952d6SSatish Balay   return 0;
50857b952d6SSatish Balay }
50957b952d6SSatish Balay 
51079bdfe76SSatish Balay static int MatDestroy_MPIBAIJ(PetscObject obj)
51179bdfe76SSatish Balay {
51279bdfe76SSatish Balay   Mat         mat = (Mat) obj;
51379bdfe76SSatish Balay   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *) mat->data;
51479bdfe76SSatish Balay   int         ierr;
51579bdfe76SSatish Balay 
51679bdfe76SSatish Balay #if defined(PETSC_LOG)
51779bdfe76SSatish Balay   PLogObjectState(obj,"Rows=%d, Cols=%d",baij->M,baij->N);
51879bdfe76SSatish Balay #endif
51979bdfe76SSatish Balay 
52079bdfe76SSatish Balay   PetscFree(baij->rowners);
52179bdfe76SSatish Balay   ierr = MatDestroy(baij->A); CHKERRQ(ierr);
52279bdfe76SSatish Balay   ierr = MatDestroy(baij->B); CHKERRQ(ierr);
52379bdfe76SSatish Balay   if (baij->colmap) PetscFree(baij->colmap);
52479bdfe76SSatish Balay   if (baij->garray) PetscFree(baij->garray);
52579bdfe76SSatish Balay   if (baij->lvec)   VecDestroy(baij->lvec);
52679bdfe76SSatish Balay   if (baij->Mvctx)  VecScatterDestroy(baij->Mvctx);
52779bdfe76SSatish Balay   if (baij->rowvalues) PetscFree(baij->rowvalues);
52879bdfe76SSatish Balay   PetscFree(baij);
52979bdfe76SSatish Balay   PLogObjectDestroy(mat);
53079bdfe76SSatish Balay   PetscHeaderDestroy(mat);
53179bdfe76SSatish Balay   return 0;
53279bdfe76SSatish Balay }
53379bdfe76SSatish Balay 
534cee3aa6bSSatish Balay static int MatMult_MPIBAIJ(Mat A,Vec xx,Vec yy)
535cee3aa6bSSatish Balay {
536cee3aa6bSSatish Balay   Mat_MPIBAIJ *a = (Mat_MPIBAIJ *) A->data;
53747b4a8eaSLois Curfman McInnes   int         ierr, nt;
538cee3aa6bSSatish Balay 
539c16cb8f2SBarry Smith   VecGetLocalSize_Fast(xx,nt);
54047b4a8eaSLois Curfman McInnes   if (nt != a->n) {
5410ac07820SSatish Balay     SETERRQ(1,"MatMult_MPIBAIJ:Incompatible parition of A and xx");
54247b4a8eaSLois Curfman McInnes   }
543c16cb8f2SBarry Smith   VecGetLocalSize_Fast(yy,nt);
54447b4a8eaSLois Curfman McInnes   if (nt != a->m) {
5450ac07820SSatish Balay     SETERRQ(1,"MatMult_MPIBAIJ:Incompatible parition of A and yy");
54647b4a8eaSLois Curfman McInnes   }
547cee3aa6bSSatish Balay   ierr = VecScatterBegin(xx,a->lvec,INSERT_VALUES,SCATTER_ALL,a->Mvctx);CHKERRQ(ierr);
548cee3aa6bSSatish Balay   ierr = (*a->A->ops.mult)(a->A,xx,yy); CHKERRQ(ierr);
549cee3aa6bSSatish Balay   ierr = VecScatterEnd(xx,a->lvec,INSERT_VALUES,SCATTER_ALL,a->Mvctx);CHKERRQ(ierr);
550cee3aa6bSSatish Balay   ierr = (*a->B->ops.multadd)(a->B,a->lvec,yy,yy); CHKERRQ(ierr);
551cee3aa6bSSatish Balay   return 0;
552cee3aa6bSSatish Balay }
553cee3aa6bSSatish Balay 
554cee3aa6bSSatish Balay static int MatMultAdd_MPIBAIJ(Mat A,Vec xx,Vec yy,Vec zz)
555cee3aa6bSSatish Balay {
556cee3aa6bSSatish Balay   Mat_MPIBAIJ *a = (Mat_MPIBAIJ *) A->data;
557cee3aa6bSSatish Balay   int        ierr;
558cee3aa6bSSatish Balay   ierr = VecScatterBegin(xx,a->lvec,INSERT_VALUES,SCATTER_ALL,a->Mvctx);CHKERRQ(ierr);
559cee3aa6bSSatish Balay   ierr = (*a->A->ops.multadd)(a->A,xx,yy,zz); CHKERRQ(ierr);
560cee3aa6bSSatish Balay   ierr = VecScatterEnd(xx,a->lvec,INSERT_VALUES,SCATTER_ALL,a->Mvctx);CHKERRQ(ierr);
561cee3aa6bSSatish Balay   ierr = (*a->B->ops.multadd)(a->B,a->lvec,zz,zz); CHKERRQ(ierr);
562cee3aa6bSSatish Balay   return 0;
563cee3aa6bSSatish Balay }
564cee3aa6bSSatish Balay 
565cee3aa6bSSatish Balay static int MatMultTrans_MPIBAIJ(Mat A,Vec xx,Vec yy)
566cee3aa6bSSatish Balay {
567cee3aa6bSSatish Balay   Mat_MPIBAIJ *a = (Mat_MPIBAIJ *) A->data;
568cee3aa6bSSatish Balay   int        ierr;
569cee3aa6bSSatish Balay 
570cee3aa6bSSatish Balay   /* do nondiagonal part */
571cee3aa6bSSatish Balay   ierr = (*a->B->ops.multtrans)(a->B,xx,a->lvec); CHKERRQ(ierr);
572cee3aa6bSSatish Balay   /* send it on its way */
573cee3aa6bSSatish Balay   ierr = VecScatterBegin(a->lvec,yy,ADD_VALUES,
574cee3aa6bSSatish Balay                 (ScatterMode)(SCATTER_ALL|SCATTER_REVERSE),a->Mvctx); CHKERRQ(ierr);
575cee3aa6bSSatish Balay   /* do local part */
576cee3aa6bSSatish Balay   ierr = (*a->A->ops.multtrans)(a->A,xx,yy); CHKERRQ(ierr);
577cee3aa6bSSatish Balay   /* receive remote parts: note this assumes the values are not actually */
578cee3aa6bSSatish Balay   /* inserted in yy until the next line, which is true for my implementation*/
579cee3aa6bSSatish Balay   /* but is not perhaps always true. */
580cee3aa6bSSatish Balay   ierr = VecScatterEnd(a->lvec,yy,ADD_VALUES,
581cee3aa6bSSatish Balay                   (ScatterMode)(SCATTER_ALL|SCATTER_REVERSE),a->Mvctx); CHKERRQ(ierr);
582cee3aa6bSSatish Balay   return 0;
583cee3aa6bSSatish Balay }
584cee3aa6bSSatish Balay 
585cee3aa6bSSatish Balay static int MatMultTransAdd_MPIBAIJ(Mat A,Vec xx,Vec yy,Vec zz)
586cee3aa6bSSatish Balay {
587cee3aa6bSSatish Balay   Mat_MPIBAIJ *a = (Mat_MPIBAIJ *) A->data;
588cee3aa6bSSatish Balay   int        ierr;
589cee3aa6bSSatish Balay 
590cee3aa6bSSatish Balay   /* do nondiagonal part */
591cee3aa6bSSatish Balay   ierr = (*a->B->ops.multtrans)(a->B,xx,a->lvec); CHKERRQ(ierr);
592cee3aa6bSSatish Balay   /* send it on its way */
593cee3aa6bSSatish Balay   ierr = VecScatterBegin(a->lvec,zz,ADD_VALUES,
594cee3aa6bSSatish Balay                  (ScatterMode)(SCATTER_ALL|SCATTER_REVERSE),a->Mvctx); CHKERRQ(ierr);
595cee3aa6bSSatish Balay   /* do local part */
596cee3aa6bSSatish Balay   ierr = (*a->A->ops.multtransadd)(a->A,xx,yy,zz); CHKERRQ(ierr);
597cee3aa6bSSatish Balay   /* receive remote parts: note this assumes the values are not actually */
598cee3aa6bSSatish Balay   /* inserted in yy until the next line, which is true for my implementation*/
599cee3aa6bSSatish Balay   /* but is not perhaps always true. */
600cee3aa6bSSatish Balay   ierr = VecScatterEnd(a->lvec,zz,ADD_VALUES,
601cee3aa6bSSatish Balay                   (ScatterMode)(SCATTER_ALL|SCATTER_REVERSE),a->Mvctx); CHKERRQ(ierr);
602cee3aa6bSSatish Balay   return 0;
603cee3aa6bSSatish Balay }
604cee3aa6bSSatish Balay 
605cee3aa6bSSatish Balay /*
606cee3aa6bSSatish Balay   This only works correctly for square matrices where the subblock A->A is the
607cee3aa6bSSatish Balay    diagonal block
608cee3aa6bSSatish Balay */
609cee3aa6bSSatish Balay static int MatGetDiagonal_MPIBAIJ(Mat A,Vec v)
610cee3aa6bSSatish Balay {
611cee3aa6bSSatish Balay   Mat_MPIBAIJ *a = (Mat_MPIBAIJ *) A->data;
612cee3aa6bSSatish Balay   if (a->M != a->N)
613cee3aa6bSSatish Balay     SETERRQ(1,"MatGetDiagonal_MPIBAIJ:Supports only square matrix where A->A is diag block");
614cee3aa6bSSatish Balay   return MatGetDiagonal(a->A,v);
615cee3aa6bSSatish Balay }
616cee3aa6bSSatish Balay 
617cee3aa6bSSatish Balay static int MatScale_MPIBAIJ(Scalar *aa,Mat A)
618cee3aa6bSSatish Balay {
619cee3aa6bSSatish Balay   Mat_MPIBAIJ *a = (Mat_MPIBAIJ *) A->data;
620cee3aa6bSSatish Balay   int        ierr;
621cee3aa6bSSatish Balay   ierr = MatScale(aa,a->A); CHKERRQ(ierr);
622cee3aa6bSSatish Balay   ierr = MatScale(aa,a->B); CHKERRQ(ierr);
623cee3aa6bSSatish Balay   return 0;
624cee3aa6bSSatish Balay }
62557b952d6SSatish Balay static int MatGetSize_MPIBAIJ(Mat matin,int *m,int *n)
62657b952d6SSatish Balay {
62757b952d6SSatish Balay   Mat_MPIBAIJ *mat = (Mat_MPIBAIJ *) matin->data;
62857b952d6SSatish Balay   *m = mat->M; *n = mat->N;
62957b952d6SSatish Balay   return 0;
63057b952d6SSatish Balay }
63157b952d6SSatish Balay 
63257b952d6SSatish Balay static int MatGetLocalSize_MPIBAIJ(Mat matin,int *m,int *n)
63357b952d6SSatish Balay {
63457b952d6SSatish Balay   Mat_MPIBAIJ *mat = (Mat_MPIBAIJ *) matin->data;
63557b952d6SSatish Balay   *m = mat->m; *n = mat->N;
63657b952d6SSatish Balay   return 0;
63757b952d6SSatish Balay }
63857b952d6SSatish Balay 
63957b952d6SSatish Balay static int MatGetOwnershipRange_MPIBAIJ(Mat matin,int *m,int *n)
64057b952d6SSatish Balay {
64157b952d6SSatish Balay   Mat_MPIBAIJ *mat = (Mat_MPIBAIJ *) matin->data;
64257b952d6SSatish Balay   *m = mat->rstart*mat->bs; *n = mat->rend*mat->bs;
64357b952d6SSatish Balay   return 0;
64457b952d6SSatish Balay }
64557b952d6SSatish Balay 
646acdf5bf4SSatish Balay extern int MatGetRow_SeqBAIJ(Mat,int,int*,int**,Scalar**);
647acdf5bf4SSatish Balay extern int MatRestoreRow_SeqBAIJ(Mat,int,int*,int**,Scalar**);
648acdf5bf4SSatish Balay 
649acdf5bf4SSatish Balay int MatGetRow_MPIBAIJ(Mat matin,int row,int *nz,int **idx,Scalar **v)
650acdf5bf4SSatish Balay {
651acdf5bf4SSatish Balay   Mat_MPIBAIJ *mat = (Mat_MPIBAIJ *) matin->data;
652acdf5bf4SSatish Balay   Scalar     *vworkA, *vworkB, **pvA, **pvB,*v_p;
653acdf5bf4SSatish Balay   int        bs = mat->bs, bs2 = mat->bs2, i, ierr, *cworkA, *cworkB, **pcA, **pcB;
654d9d09a02SSatish Balay   int        nztot, nzA, nzB, lrow, brstart = mat->rstart*bs, brend = mat->rend*bs;
655d9d09a02SSatish Balay   int        *cmap, *idx_p,cstart = mat->cstart;
656acdf5bf4SSatish Balay 
657acdf5bf4SSatish Balay   if (mat->getrowactive == PETSC_TRUE) SETERRQ(1,"MatGetRow_MPIBAIJ:Already active");
658acdf5bf4SSatish Balay   mat->getrowactive = PETSC_TRUE;
659acdf5bf4SSatish Balay 
660acdf5bf4SSatish Balay   if (!mat->rowvalues && (idx || v)) {
661acdf5bf4SSatish Balay     /*
662acdf5bf4SSatish Balay         allocate enough space to hold information from the longest row.
663acdf5bf4SSatish Balay     */
664acdf5bf4SSatish Balay     Mat_SeqBAIJ *Aa = (Mat_SeqBAIJ *) mat->A->data,*Ba = (Mat_SeqBAIJ *) mat->B->data;
665bd16c2feSSatish Balay     int     max = 1,mbs = mat->mbs,tmp;
666bd16c2feSSatish Balay     for ( i=0; i<mbs; i++ ) {
667acdf5bf4SSatish Balay       tmp = Aa->i[i+1] - Aa->i[i] + Ba->i[i+1] - Ba->i[i];
668acdf5bf4SSatish Balay       if (max < tmp) { max = tmp; }
669acdf5bf4SSatish Balay     }
670acdf5bf4SSatish Balay     mat->rowvalues = (Scalar *) PetscMalloc( max*bs2*(sizeof(int)+sizeof(Scalar)));
671acdf5bf4SSatish Balay     CHKPTRQ(mat->rowvalues);
672acdf5bf4SSatish Balay     mat->rowindices = (int *) (mat->rowvalues + max*bs2);
673acdf5bf4SSatish Balay   }
674acdf5bf4SSatish Balay 
675acdf5bf4SSatish Balay 
676d9d09a02SSatish Balay   if (row < brstart || row >= brend) SETERRQ(1,"MatGetRow_MPIBAIJ:Only local rows")
677d9d09a02SSatish Balay   lrow = row - brstart;
678acdf5bf4SSatish Balay 
679acdf5bf4SSatish Balay   pvA = &vworkA; pcA = &cworkA; pvB = &vworkB; pcB = &cworkB;
680acdf5bf4SSatish Balay   if (!v)   {pvA = 0; pvB = 0;}
681acdf5bf4SSatish Balay   if (!idx) {pcA = 0; if (!v) pcB = 0;}
682acdf5bf4SSatish Balay   ierr = (*mat->A->ops.getrow)(mat->A,lrow,&nzA,pcA,pvA); CHKERRQ(ierr);
683acdf5bf4SSatish Balay   ierr = (*mat->B->ops.getrow)(mat->B,lrow,&nzB,pcB,pvB); CHKERRQ(ierr);
684acdf5bf4SSatish Balay   nztot = nzA + nzB;
685acdf5bf4SSatish Balay 
686acdf5bf4SSatish Balay   cmap  = mat->garray;
687acdf5bf4SSatish Balay   if (v  || idx) {
688acdf5bf4SSatish Balay     if (nztot) {
689acdf5bf4SSatish Balay       /* Sort by increasing column numbers, assuming A and B already sorted */
690acdf5bf4SSatish Balay       int imark = -1;
691acdf5bf4SSatish Balay       if (v) {
692acdf5bf4SSatish Balay         *v = v_p = mat->rowvalues;
693acdf5bf4SSatish Balay         for ( i=0; i<nzB; i++ ) {
694d9d09a02SSatish Balay           if (cmap[cworkB[i]/bs] < cstart)   v_p[i] = vworkB[i];
695acdf5bf4SSatish Balay           else break;
696acdf5bf4SSatish Balay         }
697acdf5bf4SSatish Balay         imark = i;
698acdf5bf4SSatish Balay         for ( i=0; i<nzA; i++ )     v_p[imark+i] = vworkA[i];
699acdf5bf4SSatish Balay         for ( i=imark; i<nzB; i++ ) v_p[nzA+i]   = vworkB[i];
700acdf5bf4SSatish Balay       }
701acdf5bf4SSatish Balay       if (idx) {
702acdf5bf4SSatish Balay         *idx = idx_p = mat->rowindices;
703acdf5bf4SSatish Balay         if (imark > -1) {
704acdf5bf4SSatish Balay           for ( i=0; i<imark; i++ ) {
705bd16c2feSSatish Balay             idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs;
706acdf5bf4SSatish Balay           }
707acdf5bf4SSatish Balay         } else {
708acdf5bf4SSatish Balay           for ( i=0; i<nzB; i++ ) {
709d9d09a02SSatish Balay             if (cmap[cworkB[i]/bs] < cstart)
710d9d09a02SSatish Balay               idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ;
711acdf5bf4SSatish Balay             else break;
712acdf5bf4SSatish Balay           }
713acdf5bf4SSatish Balay           imark = i;
714acdf5bf4SSatish Balay         }
715d9d09a02SSatish Balay         for ( i=0; i<nzA; i++ )     idx_p[imark+i] = cstart*bs + cworkA[i];
716d9d09a02SSatish Balay         for ( i=imark; i<nzB; i++ ) idx_p[nzA+i]   = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ;
717acdf5bf4SSatish Balay       }
718acdf5bf4SSatish Balay     }
719d212a18eSSatish Balay     else {
720d212a18eSSatish Balay       if (idx) *idx = 0;
721d212a18eSSatish Balay       if (v)   *v   = 0;
722d212a18eSSatish Balay     }
723acdf5bf4SSatish Balay   }
724acdf5bf4SSatish Balay   *nz = nztot;
725acdf5bf4SSatish Balay   ierr = (*mat->A->ops.restorerow)(mat->A,lrow,&nzA,pcA,pvA); CHKERRQ(ierr);
726acdf5bf4SSatish Balay   ierr = (*mat->B->ops.restorerow)(mat->B,lrow,&nzB,pcB,pvB); CHKERRQ(ierr);
727acdf5bf4SSatish Balay   return 0;
728acdf5bf4SSatish Balay }
729acdf5bf4SSatish Balay 
730acdf5bf4SSatish Balay int MatRestoreRow_MPIBAIJ(Mat mat,int row,int *nz,int **idx,Scalar **v)
731acdf5bf4SSatish Balay {
732acdf5bf4SSatish Balay   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *) mat->data;
733acdf5bf4SSatish Balay   if (baij->getrowactive == PETSC_FALSE) {
734acdf5bf4SSatish Balay     SETERRQ(1,"MatRestoreRow_MPIBAIJ:MatGetRow not called");
735acdf5bf4SSatish Balay   }
736acdf5bf4SSatish Balay   baij->getrowactive = PETSC_FALSE;
737acdf5bf4SSatish Balay   return 0;
738acdf5bf4SSatish Balay }
739acdf5bf4SSatish Balay 
7405a838052SSatish Balay static int MatGetBlockSize_MPIBAIJ(Mat mat, int *bs)
7415a838052SSatish Balay {
7425a838052SSatish Balay   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *) mat->data;
7435a838052SSatish Balay   *bs = baij->bs;
7445a838052SSatish Balay   return 0;
7455a838052SSatish Balay }
7465a838052SSatish Balay 
74758667388SSatish Balay static int MatZeroEntries_MPIBAIJ(Mat A)
74858667388SSatish Balay {
74958667388SSatish Balay   Mat_MPIBAIJ *l = (Mat_MPIBAIJ *) A->data;
75058667388SSatish Balay   int         ierr;
75158667388SSatish Balay   ierr = MatZeroEntries(l->A); CHKERRQ(ierr);
75258667388SSatish Balay   ierr = MatZeroEntries(l->B); CHKERRQ(ierr);
75358667388SSatish Balay   return 0;
75458667388SSatish Balay }
7550ac07820SSatish Balay 
7560ac07820SSatish Balay static int MatGetInfo_MPIBAIJ(Mat matin,MatInfoType flag,int *nz,
7570ac07820SSatish Balay                              int *nzalloc,int *mem)
7580ac07820SSatish Balay {
7590ac07820SSatish Balay   Mat_MPIBAIJ *mat = (Mat_MPIBAIJ *) matin->data;
7600ac07820SSatish Balay   Mat         A = mat->A, B = mat->B;
7610ac07820SSatish Balay   int         ierr, isend[3], irecv[3], nzA, nzallocA, memA;
7620ac07820SSatish Balay 
7630ac07820SSatish Balay   ierr = MatGetInfo(A,MAT_LOCAL,&nzA,&nzallocA,&memA); CHKERRQ(ierr);
7640ac07820SSatish Balay   ierr = MatGetInfo(B,MAT_LOCAL,&isend[0],&isend[1],&isend[2]); CHKERRQ(ierr);
7650ac07820SSatish Balay   isend[0] += nzA; isend[1] += nzallocA; isend[2] += memA;
7660ac07820SSatish Balay   if (flag == MAT_LOCAL) {
7670ac07820SSatish Balay     if (nz)       *nz      = isend[0];
7680ac07820SSatish Balay     if (nzalloc)  *nzalloc = isend[1];
7690ac07820SSatish Balay     if (mem)      *mem     = isend[2];
7700ac07820SSatish Balay   } else if (flag == MAT_GLOBAL_MAX) {
7710ac07820SSatish Balay     MPI_Allreduce( isend, irecv,3,MPI_INT,MPI_MAX,matin->comm);
7720ac07820SSatish Balay     if (nz)      *nz      = irecv[0];
7730ac07820SSatish Balay     if (nzalloc) *nzalloc = irecv[1];
7740ac07820SSatish Balay     if (mem)     *mem     = irecv[2];
7750ac07820SSatish Balay   } else if (flag == MAT_GLOBAL_SUM) {
7760ac07820SSatish Balay     MPI_Allreduce( isend, irecv,3,MPI_INT,MPI_SUM,matin->comm);
7770ac07820SSatish Balay     if (nz)      *nz      = irecv[0];
7780ac07820SSatish Balay     if (nzalloc) *nzalloc = irecv[1];
7790ac07820SSatish Balay     if (mem)     *mem     = irecv[2];
7800ac07820SSatish Balay   }
7810ac07820SSatish Balay   return 0;
7820ac07820SSatish Balay }
7830ac07820SSatish Balay 
78458667388SSatish Balay static int MatSetOption_MPIBAIJ(Mat A,MatOption op)
78558667388SSatish Balay {
78658667388SSatish Balay   Mat_MPIBAIJ *a = (Mat_MPIBAIJ *) A->data;
78758667388SSatish Balay 
78858667388SSatish Balay   if (op == MAT_NO_NEW_NONZERO_LOCATIONS ||
78958667388SSatish Balay       op == MAT_YES_NEW_NONZERO_LOCATIONS ||
79058667388SSatish Balay       op == MAT_COLUMNS_SORTED ||
79158667388SSatish Balay       op == MAT_ROW_ORIENTED) {
79258667388SSatish Balay         MatSetOption(a->A,op);
79358667388SSatish Balay         MatSetOption(a->B,op);
79458667388SSatish Balay   }
79558667388SSatish Balay   else if (op == MAT_ROWS_SORTED ||
79658667388SSatish Balay            op == MAT_SYMMETRIC ||
79758667388SSatish Balay            op == MAT_STRUCTURALLY_SYMMETRIC ||
79858667388SSatish Balay            op == MAT_YES_NEW_DIAGONALS)
79958667388SSatish Balay     PLogInfo(A,"Info:MatSetOption_MPIBAIJ:Option ignored\n");
80058667388SSatish Balay   else if (op == MAT_COLUMN_ORIENTED) {
80158667388SSatish Balay     a->roworiented = 0;
80258667388SSatish Balay     MatSetOption(a->A,op);
80358667388SSatish Balay     MatSetOption(a->B,op);
80458667388SSatish Balay   }
80558667388SSatish Balay   else if (op == MAT_NO_NEW_DIAGONALS)
8060ac07820SSatish Balay     {SETERRQ(PETSC_ERR_SUP,"MatSetOption_MPIBAIJ:MAT_NO_NEW_DIAGONALS");}
80758667388SSatish Balay   else
8080ac07820SSatish Balay     {SETERRQ(PETSC_ERR_SUP,"MatSetOption_MPIBAIJ:unknown option");}
80958667388SSatish Balay   return 0;
81058667388SSatish Balay }
81158667388SSatish Balay 
8120ac07820SSatish Balay static int MatTranspose_MPIBAIJ(Mat A,Mat *matout)
8130ac07820SSatish Balay {
8140ac07820SSatish Balay   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *) A->data;
8150ac07820SSatish Balay   Mat_SeqBAIJ *Aloc;
8160ac07820SSatish Balay   Mat        B;
8170ac07820SSatish Balay   int        ierr,M=baij->M,N=baij->N,*ai,*aj,row,i,*rvals,j,k,col;
8180ac07820SSatish Balay   int        bs=baij->bs,mbs=baij->mbs;
8190ac07820SSatish Balay   Scalar     *a;
8200ac07820SSatish Balay 
8210ac07820SSatish Balay   if (matout == PETSC_NULL && M != N)
8220ac07820SSatish Balay     SETERRQ(1,"MatTranspose_MPIBAIJ:Square matrix only for in-place");
8230ac07820SSatish Balay   ierr = MatCreateMPIBAIJ(A->comm,baij->bs,PETSC_DECIDE,PETSC_DECIDE,N,M,0,PETSC_NULL,0,PETSC_NULL,&B);
8240ac07820SSatish Balay   CHKERRQ(ierr);
8250ac07820SSatish Balay 
8260ac07820SSatish Balay   /* copy over the A part */
8270ac07820SSatish Balay   Aloc = (Mat_SeqBAIJ*) baij->A->data;
8280ac07820SSatish Balay   ai = Aloc->i; aj = Aloc->j; a = Aloc->a;
8290ac07820SSatish Balay   row = baij->rstart;
8300ac07820SSatish Balay   rvals = (int *) PetscMalloc(bs*sizeof(int)); CHKPTRQ(rvals);
8310ac07820SSatish Balay 
8320ac07820SSatish Balay   for ( i=0; i<mbs; i++ ) {
8330ac07820SSatish Balay     rvals[0] = bs*(baij->rstart + i);
8340ac07820SSatish Balay     for ( j=1; j<bs; j++ ) { rvals[j] = rvals[j-1] + 1; }
8350ac07820SSatish Balay     for ( j=ai[i]; j<ai[i+1]; j++ ) {
8360ac07820SSatish Balay       col = (baij->cstart+aj[j])*bs;
8370ac07820SSatish Balay       for (k=0; k<bs; k++ ) {
8380ac07820SSatish Balay         ierr = MatSetValues(B,1,&col,bs,rvals,a,INSERT_VALUES);CHKERRQ(ierr);
8390ac07820SSatish Balay         col++; a += bs;
8400ac07820SSatish Balay       }
8410ac07820SSatish Balay     }
8420ac07820SSatish Balay   }
8430ac07820SSatish Balay   /* copy over the B part */
8440ac07820SSatish Balay   Aloc = (Mat_SeqBAIJ*) baij->B->data;
8450ac07820SSatish Balay   ai = Aloc->i; aj = Aloc->j; a = Aloc->a;
8460ac07820SSatish Balay   row = baij->rstart*bs;
8470ac07820SSatish Balay   for ( i=0; i<mbs; i++ ) {
8480ac07820SSatish Balay     rvals[0] = bs*(baij->rstart + i);
8490ac07820SSatish Balay     for ( j=1; j<bs; j++ ) { rvals[j] = rvals[j-1] + 1; }
8500ac07820SSatish Balay     for ( j=ai[i]; j<ai[i+1]; j++ ) {
8510ac07820SSatish Balay       col = baij->garray[aj[j]]*bs;
8520ac07820SSatish Balay       for (k=0; k<bs; k++ ) {
8530ac07820SSatish Balay         ierr = MatSetValues(B,1,&col,bs,rvals,a,INSERT_VALUES);CHKERRQ(ierr);
8540ac07820SSatish Balay         col++; a += bs;
8550ac07820SSatish Balay       }
8560ac07820SSatish Balay     }
8570ac07820SSatish Balay   }
8580ac07820SSatish Balay   PetscFree(rvals);
8590ac07820SSatish Balay   ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY); CHKERRQ(ierr);
8600ac07820SSatish Balay   ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY); CHKERRQ(ierr);
8610ac07820SSatish Balay 
8620ac07820SSatish Balay   if (matout != PETSC_NULL) {
8630ac07820SSatish Balay     *matout = B;
8640ac07820SSatish Balay   } else {
8650ac07820SSatish Balay     /* This isn't really an in-place transpose .... but free data structures from baij */
8660ac07820SSatish Balay     PetscFree(baij->rowners);
8670ac07820SSatish Balay     ierr = MatDestroy(baij->A); CHKERRQ(ierr);
8680ac07820SSatish Balay     ierr = MatDestroy(baij->B); CHKERRQ(ierr);
8690ac07820SSatish Balay     if (baij->colmap) PetscFree(baij->colmap);
8700ac07820SSatish Balay     if (baij->garray) PetscFree(baij->garray);
8710ac07820SSatish Balay     if (baij->lvec) VecDestroy(baij->lvec);
8720ac07820SSatish Balay     if (baij->Mvctx) VecScatterDestroy(baij->Mvctx);
8730ac07820SSatish Balay     PetscFree(baij);
8740ac07820SSatish Balay     PetscMemcpy(A,B,sizeof(struct _Mat));
8750ac07820SSatish Balay     PetscHeaderDestroy(B);
8760ac07820SSatish Balay   }
8770ac07820SSatish Balay   return 0;
8780ac07820SSatish Balay }
8790ac07820SSatish Balay /* the code does not do the diagonal entries correctly unless the
8800ac07820SSatish Balay    matrix is square and the column and row owerships are identical.
8810ac07820SSatish Balay    This is a BUG. The only way to fix it seems to be to access
8820ac07820SSatish Balay    baij->A and baij->B directly and not through the MatZeroRows()
8830ac07820SSatish Balay    routine.
8840ac07820SSatish Balay */
8850ac07820SSatish Balay static int MatZeroRows_MPIBAIJ(Mat A,IS is,Scalar *diag)
8860ac07820SSatish Balay {
8870ac07820SSatish Balay   Mat_MPIBAIJ    *l = (Mat_MPIBAIJ *) A->data;
8880ac07820SSatish Balay   int            i,ierr,N, *rows,*owners = l->rowners,size = l->size;
8890ac07820SSatish Balay   int            *procs,*nprocs,j,found,idx,nsends,*work;
8900ac07820SSatish Balay   int            nmax,*svalues,*starts,*owner,nrecvs,rank = l->rank;
8910ac07820SSatish Balay   int            *rvalues,tag = A->tag,count,base,slen,n,*source;
8920ac07820SSatish Balay   int            *lens,imdex,*lrows,*values,bs=l->bs;
8930ac07820SSatish Balay   MPI_Comm       comm = A->comm;
8940ac07820SSatish Balay   MPI_Request    *send_waits,*recv_waits;
8950ac07820SSatish Balay   MPI_Status     recv_status,*send_status;
8960ac07820SSatish Balay   IS             istmp;
8970ac07820SSatish Balay 
8980ac07820SSatish Balay   ierr = ISGetSize(is,&N); CHKERRQ(ierr);
8990ac07820SSatish Balay   ierr = ISGetIndices(is,&rows); CHKERRQ(ierr);
9000ac07820SSatish Balay 
9010ac07820SSatish Balay   /*  first count number of contributors to each processor */
9020ac07820SSatish Balay   nprocs = (int *) PetscMalloc( 2*size*sizeof(int) ); CHKPTRQ(nprocs);
9030ac07820SSatish Balay   PetscMemzero(nprocs,2*size*sizeof(int)); procs = nprocs + size;
9040ac07820SSatish Balay   owner = (int *) PetscMalloc((N+1)*sizeof(int)); CHKPTRQ(owner); /* see note*/
9050ac07820SSatish Balay   for ( i=0; i<N; i++ ) {
9060ac07820SSatish Balay     idx = rows[i];
9070ac07820SSatish Balay     found = 0;
9080ac07820SSatish Balay     for ( j=0; j<size; j++ ) {
9090ac07820SSatish Balay       if (idx >= owners[j]*bs && idx < owners[j+1]*bs) {
9100ac07820SSatish Balay         nprocs[j]++; procs[j] = 1; owner[i] = j; found = 1; break;
9110ac07820SSatish Balay       }
9120ac07820SSatish Balay     }
9130ac07820SSatish Balay     if (!found) SETERRQ(1,"MatZeroRows_MPIBAIJ:Index out of range");
9140ac07820SSatish Balay   }
9150ac07820SSatish Balay   nsends = 0;  for ( i=0; i<size; i++ ) { nsends += procs[i];}
9160ac07820SSatish Balay 
9170ac07820SSatish Balay   /* inform other processors of number of messages and max length*/
9180ac07820SSatish Balay   work = (int *) PetscMalloc( size*sizeof(int) ); CHKPTRQ(work);
9190ac07820SSatish Balay   MPI_Allreduce( procs, work,size,MPI_INT,MPI_SUM,comm);
9200ac07820SSatish Balay   nrecvs = work[rank];
9210ac07820SSatish Balay   MPI_Allreduce( nprocs, work,size,MPI_INT,MPI_MAX,comm);
9220ac07820SSatish Balay   nmax = work[rank];
9230ac07820SSatish Balay   PetscFree(work);
9240ac07820SSatish Balay 
9250ac07820SSatish Balay   /* post receives:   */
9260ac07820SSatish Balay   rvalues = (int *) PetscMalloc((nrecvs+1)*(nmax+1)*sizeof(int)); /*see note */
9270ac07820SSatish Balay   CHKPTRQ(rvalues);
9280ac07820SSatish Balay   recv_waits = (MPI_Request *) PetscMalloc((nrecvs+1)*sizeof(MPI_Request));
9290ac07820SSatish Balay   CHKPTRQ(recv_waits);
9300ac07820SSatish Balay   for ( i=0; i<nrecvs; i++ ) {
9310ac07820SSatish Balay     MPI_Irecv(rvalues+nmax*i,nmax,MPI_INT,MPI_ANY_SOURCE,tag,comm,recv_waits+i);
9320ac07820SSatish Balay   }
9330ac07820SSatish Balay 
9340ac07820SSatish Balay   /* do sends:
9350ac07820SSatish Balay       1) starts[i] gives the starting index in svalues for stuff going to
9360ac07820SSatish Balay          the ith processor
9370ac07820SSatish Balay   */
9380ac07820SSatish Balay   svalues = (int *) PetscMalloc( (N+1)*sizeof(int) ); CHKPTRQ(svalues);
9390ac07820SSatish Balay   send_waits = (MPI_Request *) PetscMalloc( (nsends+1)*sizeof(MPI_Request));
9400ac07820SSatish Balay   CHKPTRQ(send_waits);
9410ac07820SSatish Balay   starts = (int *) PetscMalloc( (size+1)*sizeof(int) ); CHKPTRQ(starts);
9420ac07820SSatish Balay   starts[0] = 0;
9430ac07820SSatish Balay   for ( i=1; i<size; i++ ) { starts[i] = starts[i-1] + nprocs[i-1];}
9440ac07820SSatish Balay   for ( i=0; i<N; i++ ) {
9450ac07820SSatish Balay     svalues[starts[owner[i]]++] = rows[i];
9460ac07820SSatish Balay   }
9470ac07820SSatish Balay   ISRestoreIndices(is,&rows);
9480ac07820SSatish Balay 
9490ac07820SSatish Balay   starts[0] = 0;
9500ac07820SSatish Balay   for ( i=1; i<size+1; i++ ) { starts[i] = starts[i-1] + nprocs[i-1];}
9510ac07820SSatish Balay   count = 0;
9520ac07820SSatish Balay   for ( i=0; i<size; i++ ) {
9530ac07820SSatish Balay     if (procs[i]) {
9540ac07820SSatish Balay       MPI_Isend(svalues+starts[i],nprocs[i],MPI_INT,i,tag,comm,send_waits+count++);
9550ac07820SSatish Balay     }
9560ac07820SSatish Balay   }
9570ac07820SSatish Balay   PetscFree(starts);
9580ac07820SSatish Balay 
9590ac07820SSatish Balay   base = owners[rank]*bs;
9600ac07820SSatish Balay 
9610ac07820SSatish Balay   /*  wait on receives */
9620ac07820SSatish Balay   lens   = (int *) PetscMalloc( 2*(nrecvs+1)*sizeof(int) ); CHKPTRQ(lens);
9630ac07820SSatish Balay   source = lens + nrecvs;
9640ac07820SSatish Balay   count  = nrecvs; slen = 0;
9650ac07820SSatish Balay   while (count) {
9660ac07820SSatish Balay     MPI_Waitany(nrecvs,recv_waits,&imdex,&recv_status);
9670ac07820SSatish Balay     /* unpack receives into our local space */
9680ac07820SSatish Balay     MPI_Get_count(&recv_status,MPI_INT,&n);
9690ac07820SSatish Balay     source[imdex]  = recv_status.MPI_SOURCE;
9700ac07820SSatish Balay     lens[imdex]  = n;
9710ac07820SSatish Balay     slen += n;
9720ac07820SSatish Balay     count--;
9730ac07820SSatish Balay   }
9740ac07820SSatish Balay   PetscFree(recv_waits);
9750ac07820SSatish Balay 
9760ac07820SSatish Balay   /* move the data into the send scatter */
9770ac07820SSatish Balay   lrows = (int *) PetscMalloc( (slen+1)*sizeof(int) ); CHKPTRQ(lrows);
9780ac07820SSatish Balay   count = 0;
9790ac07820SSatish Balay   for ( i=0; i<nrecvs; i++ ) {
9800ac07820SSatish Balay     values = rvalues + i*nmax;
9810ac07820SSatish Balay     for ( j=0; j<lens[i]; j++ ) {
9820ac07820SSatish Balay       lrows[count++] = values[j] - base;
9830ac07820SSatish Balay     }
9840ac07820SSatish Balay   }
9850ac07820SSatish Balay   PetscFree(rvalues); PetscFree(lens);
9860ac07820SSatish Balay   PetscFree(owner); PetscFree(nprocs);
9870ac07820SSatish Balay 
9880ac07820SSatish Balay   /* actually zap the local rows */
9890ac07820SSatish Balay   ierr = ISCreateSeq(MPI_COMM_SELF,slen,lrows,&istmp);CHKERRQ(ierr);
9900ac07820SSatish Balay   PLogObjectParent(A,istmp);
9910ac07820SSatish Balay   PetscFree(lrows);
9920ac07820SSatish Balay   ierr = MatZeroRows(l->A,istmp,diag); CHKERRQ(ierr);
9930ac07820SSatish Balay   ierr = MatZeroRows(l->B,istmp,0); CHKERRQ(ierr);
9940ac07820SSatish Balay   ierr = ISDestroy(istmp); CHKERRQ(ierr);
9950ac07820SSatish Balay 
9960ac07820SSatish Balay   /* wait on sends */
9970ac07820SSatish Balay   if (nsends) {
9980ac07820SSatish Balay     send_status = (MPI_Status *) PetscMalloc(nsends*sizeof(MPI_Status));
9990ac07820SSatish Balay     CHKPTRQ(send_status);
10000ac07820SSatish Balay     MPI_Waitall(nsends,send_waits,send_status);
10010ac07820SSatish Balay     PetscFree(send_status);
10020ac07820SSatish Balay   }
10030ac07820SSatish Balay   PetscFree(send_waits); PetscFree(svalues);
10040ac07820SSatish Balay 
10050ac07820SSatish Balay   return 0;
10060ac07820SSatish Balay }
1007ba4ca20aSSatish Balay extern int MatPrintHelp_SeqBAIJ(Mat);
1008ba4ca20aSSatish Balay static int MatPrintHelp_MPIBAIJ(Mat A)
1009ba4ca20aSSatish Balay {
1010ba4ca20aSSatish Balay   Mat_MPIBAIJ *a   = (Mat_MPIBAIJ*) A->data;
1011ba4ca20aSSatish Balay 
1012ba4ca20aSSatish Balay   if (!a->rank) return MatPrintHelp_SeqBAIJ(a->A);
1013ba4ca20aSSatish Balay   else return 0;
1014ba4ca20aSSatish Balay }
10150ac07820SSatish Balay 
10160ac07820SSatish Balay static int MatConvertSameType_MPIBAIJ(Mat,Mat *,int);
10170ac07820SSatish Balay 
101879bdfe76SSatish Balay /* -------------------------------------------------------------------*/
101979bdfe76SSatish Balay static struct _MatOps MatOps = {
1020bd16c2feSSatish Balay   MatSetValues_MPIBAIJ,MatGetRow_MPIBAIJ,MatRestoreRow_MPIBAIJ,MatMult_MPIBAIJ,
102193bc47c4SSatish Balay   MatMultAdd_MPIBAIJ,MatMultTrans_MPIBAIJ,MatMultTransAdd_MPIBAIJ,MatSolve_MPIBAIJ,
102293bc47c4SSatish Balay   MatSolveAdd_MPIBAIJ,MatSolveTrans_MPIBAIJ,MatSolveTransAdd_MPIBAIJ,MatLUFactor_MPIBAIJ,
10230ac07820SSatish Balay   0,0,MatTranspose_MPIBAIJ,MatGetInfo_MPIBAIJ,
1024acdf5bf4SSatish Balay   0,MatGetDiagonal_MPIBAIJ,0,MatNorm_MPIBAIJ,
102558667388SSatish Balay   MatAssemblyBegin_MPIBAIJ,MatAssemblyEnd_MPIBAIJ,0,MatSetOption_MPIBAIJ,
10260ac07820SSatish Balay   MatZeroEntries_MPIBAIJ,MatZeroRows_MPIBAIJ,MatGetReordering_MPIBAIJ,MatLUFactorSymbolic_MPIBAIJ,
102793bc47c4SSatish Balay   MatLUFactorNumeric_MPIBAIJ,0,0,MatGetSize_MPIBAIJ,
102893bc47c4SSatish Balay   MatGetLocalSize_MPIBAIJ,MatGetOwnershipRange_MPIBAIJ,MatILUFactorSymbolic_MPIBAIJ,0,
1029*905e6a2fSBarry Smith   0,0,0,MatConvertSameType_MPIBAIJ,0,0,
1030d212a18eSSatish Balay   0,0,0,MatGetSubMatrices_MPIBAIJ,
1031ba4ca20aSSatish Balay   MatIncreaseOverlap_MPIBAIJ,MatGetValues_MPIBAIJ,0,MatPrintHelp_MPIBAIJ,
10325a838052SSatish Balay   MatScale_MPIBAIJ,0,0,0,MatGetBlockSize_MPIBAIJ};
103379bdfe76SSatish Balay 
103479bdfe76SSatish Balay 
103579bdfe76SSatish Balay /*@C
103679bdfe76SSatish Balay    MatCreateMPIBAIJ - Creates a sparse parallel matrix in block AIJ format
103779bdfe76SSatish Balay    (block compressed row).  For good matrix assembly performance
103879bdfe76SSatish Balay    the user should preallocate the matrix storage by setting the parameters
103979bdfe76SSatish Balay    d_nz (or d_nnz) and o_nz (or o_nnz).  By setting these parameters accurately,
104079bdfe76SSatish Balay    performance can be increased by more than a factor of 50.
104179bdfe76SSatish Balay 
104279bdfe76SSatish Balay    Input Parameters:
104379bdfe76SSatish Balay .  comm - MPI communicator
104479bdfe76SSatish Balay .  bs   - size of blockk
104579bdfe76SSatish Balay .  m - number of local rows (or PETSC_DECIDE to have calculated if M is given)
104692e8d321SLois Curfman McInnes            This value should be the same as the local size used in creating the
104792e8d321SLois Curfman McInnes            y vector for the matrix-vector product y = Ax.
104892e8d321SLois Curfman McInnes .  n - number of local columns (or PETSC_DECIDE to have calculated if N is given)
104992e8d321SLois Curfman McInnes            This value should be the same as the local size used in creating the
105092e8d321SLois Curfman McInnes            x vector for the matrix-vector product y = Ax.
105179bdfe76SSatish Balay .  M - number of global rows (or PETSC_DECIDE to have calculated if m is given)
105292e8d321SLois Curfman McInnes .  N - number of global columns (or PETSC_DECIDE to have calculated if n is given)
105379bdfe76SSatish Balay .  d_nz  - number of block nonzeros per block row in diagonal portion of local
105479bdfe76SSatish Balay            submatrix  (same for all local rows)
105592e8d321SLois Curfman McInnes .  d_nzz - array containing the number of block nonzeros in the various block rows
105692e8d321SLois Curfman McInnes            of the in diagonal portion of the local (possibly different for each block
105792e8d321SLois Curfman McInnes            row) or PETSC_NULL.  You must leave room for the diagonal entry even if
105892e8d321SLois Curfman McInnes            it is zero.
105992e8d321SLois Curfman McInnes .  o_nz  - number of block nonzeros per block row in the off-diagonal portion of local
106079bdfe76SSatish Balay            submatrix (same for all local rows).
106192e8d321SLois Curfman McInnes .  o_nzz - array containing the number of nonzeros in the various block rows of the
106292e8d321SLois Curfman McInnes            off-diagonal portion of the local submatrix (possibly different for
106392e8d321SLois Curfman McInnes            each block row) or PETSC_NULL.
106479bdfe76SSatish Balay 
106579bdfe76SSatish Balay    Output Parameter:
106679bdfe76SSatish Balay .  A - the matrix
106779bdfe76SSatish Balay 
106879bdfe76SSatish Balay    Notes:
106979bdfe76SSatish Balay    The user MUST specify either the local or global matrix dimensions
107079bdfe76SSatish Balay    (possibly both).
107179bdfe76SSatish Balay 
107279bdfe76SSatish Balay    Storage Information:
107379bdfe76SSatish Balay    For a square global matrix we define each processor's diagonal portion
107479bdfe76SSatish Balay    to be its local rows and the corresponding columns (a square submatrix);
107579bdfe76SSatish Balay    each processor's off-diagonal portion encompasses the remainder of the
107679bdfe76SSatish Balay    local matrix (a rectangular submatrix).
107779bdfe76SSatish Balay 
107879bdfe76SSatish Balay    The user can specify preallocated storage for the diagonal part of
107979bdfe76SSatish Balay    the local submatrix with either d_nz or d_nnz (not both).  Set
108079bdfe76SSatish Balay    d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic
108179bdfe76SSatish Balay    memory allocation.  Likewise, specify preallocated storage for the
108279bdfe76SSatish Balay    off-diagonal part of the local submatrix with o_nz or o_nnz (not both).
108379bdfe76SSatish Balay 
108479bdfe76SSatish Balay    Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
108579bdfe76SSatish Balay    the figure below we depict these three local rows and all columns (0-11).
108679bdfe76SSatish Balay 
108779bdfe76SSatish Balay $          0 1 2 3 4 5 6 7 8 9 10 11
108879bdfe76SSatish Balay $         -------------------
108979bdfe76SSatish Balay $  row 3  |  o o o d d d o o o o o o
109079bdfe76SSatish Balay $  row 4  |  o o o d d d o o o o o o
109179bdfe76SSatish Balay $  row 5  |  o o o d d d o o o o o o
109279bdfe76SSatish Balay $         -------------------
109379bdfe76SSatish Balay $
109479bdfe76SSatish Balay 
109579bdfe76SSatish Balay    Thus, any entries in the d locations are stored in the d (diagonal)
109679bdfe76SSatish Balay    submatrix, and any entries in the o locations are stored in the
109779bdfe76SSatish Balay    o (off-diagonal) submatrix.  Note that the d and the o submatrices are
109857b952d6SSatish Balay    stored simply in the MATSEQBAIJ format for compressed row storage.
109979bdfe76SSatish Balay 
110079bdfe76SSatish Balay    Now d_nz should indicate the number of nonzeros per row in the d matrix,
110179bdfe76SSatish Balay    and o_nz should indicate the number of nonzeros per row in the o matrix.
110279bdfe76SSatish Balay    In general, for PDE problems in which most nonzeros are near the diagonal,
110392e8d321SLois Curfman McInnes    one expects d_nz >> o_nz.   For large problems you MUST preallocate memory
110492e8d321SLois Curfman McInnes    or you will get TERRIBLE performance; see the users' manual chapter on
110592e8d321SLois Curfman McInnes    matrices and the file $(PETSC_DIR)/Performance.
110679bdfe76SSatish Balay 
110792e8d321SLois Curfman McInnes .keywords: matrix, block, aij, compressed row, sparse, parallel
110879bdfe76SSatish Balay 
110979bdfe76SSatish Balay .seealso: MatCreate(), MatCreateSeqBAIJ(), MatSetValues()
111079bdfe76SSatish Balay @*/
111179bdfe76SSatish Balay int MatCreateMPIBAIJ(MPI_Comm comm,int bs,int m,int n,int M,int N,
111279bdfe76SSatish Balay                     int d_nz,int *d_nnz,int o_nz,int *o_nnz,Mat *A)
111379bdfe76SSatish Balay {
111479bdfe76SSatish Balay   Mat          B;
111579bdfe76SSatish Balay   Mat_MPIBAIJ  *b;
1116cee3aa6bSSatish Balay   int          ierr, i,sum[2],work[2],mbs,nbs,Mbs=PETSC_DECIDE,Nbs=PETSC_DECIDE;
111779bdfe76SSatish Balay 
111879bdfe76SSatish Balay   if (bs < 1) SETERRQ(1,"MatCreateMPIBAIJ: invalid block size specified");
111979bdfe76SSatish Balay   *A = 0;
112079bdfe76SSatish Balay   PetscHeaderCreate(B,_Mat,MAT_COOKIE,MATMPIBAIJ,comm);
112179bdfe76SSatish Balay   PLogObjectCreate(B);
112279bdfe76SSatish Balay   B->data       = (void *) (b = PetscNew(Mat_MPIBAIJ)); CHKPTRQ(b);
112379bdfe76SSatish Balay   PetscMemzero(b,sizeof(Mat_MPIBAIJ));
112479bdfe76SSatish Balay   PetscMemcpy(&B->ops,&MatOps,sizeof(struct _MatOps));
112579bdfe76SSatish Balay   B->destroy    = MatDestroy_MPIBAIJ;
112679bdfe76SSatish Balay   B->view       = MatView_MPIBAIJ;
112757b952d6SSatish Balay 
112879bdfe76SSatish Balay   B->factor     = 0;
112979bdfe76SSatish Balay   B->assembled  = PETSC_FALSE;
113079bdfe76SSatish Balay 
113179bdfe76SSatish Balay   b->insertmode = NOT_SET_VALUES;
113279bdfe76SSatish Balay   MPI_Comm_rank(comm,&b->rank);
113379bdfe76SSatish Balay   MPI_Comm_size(comm,&b->size);
113479bdfe76SSatish Balay 
113579bdfe76SSatish Balay   if ( m == PETSC_DECIDE && (d_nnz != PETSC_NULL || o_nnz != PETSC_NULL))
113657b952d6SSatish Balay     SETERRQ(1,"MatCreateMPIBAIJ:Cannot have PETSC_DECIDE rows but set d_nnz or o_nnz");
1137cee3aa6bSSatish Balay   if ( M == PETSC_DECIDE && m == PETSC_DECIDE) SETERRQ(1,"MatCreateMPIBAIJ: either M or m should be specified");
1138cee3aa6bSSatish Balay   if ( M == PETSC_DECIDE && n == PETSC_DECIDE)SETERRQ(1,"MatCreateMPIBAIJ: either N or n should be specified");
1139cee3aa6bSSatish Balay   if ( M != PETSC_DECIDE && m != PETSC_DECIDE) M = PETSC_DECIDE;
1140cee3aa6bSSatish Balay   if ( N != PETSC_DECIDE && n != PETSC_DECIDE) N = PETSC_DECIDE;
114179bdfe76SSatish Balay 
114279bdfe76SSatish Balay   if (M == PETSC_DECIDE || N == PETSC_DECIDE) {
114379bdfe76SSatish Balay     work[0] = m; work[1] = n;
114479bdfe76SSatish Balay     mbs = m/bs; nbs = n/bs;
114579bdfe76SSatish Balay     MPI_Allreduce( work, sum,2,MPI_INT,MPI_SUM,comm );
114679bdfe76SSatish Balay     if (M == PETSC_DECIDE) {M = sum[0]; Mbs = M/bs;}
114779bdfe76SSatish Balay     if (N == PETSC_DECIDE) {N = sum[1]; Nbs = N/bs;}
114879bdfe76SSatish Balay   }
114979bdfe76SSatish Balay   if (m == PETSC_DECIDE) {
115079bdfe76SSatish Balay     Mbs = M/bs;
115179bdfe76SSatish Balay     if (Mbs*bs != M) SETERRQ(1,"MatCreateMPIBAIJ: No of global rows must be divisible by blocksize");
115279bdfe76SSatish Balay     mbs = Mbs/b->size + ((Mbs % b->size) > b->rank);
115379bdfe76SSatish Balay     m   = mbs*bs;
115479bdfe76SSatish Balay   }
115579bdfe76SSatish Balay   if (n == PETSC_DECIDE) {
115679bdfe76SSatish Balay     Nbs = N/bs;
115779bdfe76SSatish Balay     if (Nbs*bs != N) SETERRQ(1,"MatCreateMPIBAIJ: No of global cols must be divisible by blocksize");
115879bdfe76SSatish Balay     nbs = Nbs/b->size + ((Nbs % b->size) > b->rank);
115979bdfe76SSatish Balay     n   = nbs*bs;
116079bdfe76SSatish Balay   }
1161cee3aa6bSSatish Balay   if (mbs*bs != m || nbs*bs != n) SETERRQ(1,"MatCreateMPIBAIJ: No of local rows, cols must be divisible by blocksize");
116279bdfe76SSatish Balay 
116379bdfe76SSatish Balay   b->m = m; B->m = m;
116479bdfe76SSatish Balay   b->n = n; B->n = n;
116579bdfe76SSatish Balay   b->N = N; B->N = N;
116679bdfe76SSatish Balay   b->M = M; B->M = M;
116779bdfe76SSatish Balay   b->bs  = bs;
116879bdfe76SSatish Balay   b->bs2 = bs*bs;
116979bdfe76SSatish Balay   b->mbs = mbs;
117079bdfe76SSatish Balay   b->nbs = nbs;
117179bdfe76SSatish Balay   b->Mbs = Mbs;
117279bdfe76SSatish Balay   b->Nbs = Nbs;
117379bdfe76SSatish Balay 
117479bdfe76SSatish Balay   /* build local table of row and column ownerships */
117579bdfe76SSatish Balay   b->rowners = (int *) PetscMalloc(2*(b->size+2)*sizeof(int)); CHKPTRQ(b->rowners);
117679bdfe76SSatish Balay   PLogObjectMemory(B,2*(b->size+2)*sizeof(int)+sizeof(struct _Mat)+sizeof(Mat_MPIBAIJ));
11770ac07820SSatish Balay   b->cowners = b->rowners + b->size + 2;
117879bdfe76SSatish Balay   MPI_Allgather(&mbs,1,MPI_INT,b->rowners+1,1,MPI_INT,comm);
117979bdfe76SSatish Balay   b->rowners[0] = 0;
118079bdfe76SSatish Balay   for ( i=2; i<=b->size; i++ ) {
118179bdfe76SSatish Balay     b->rowners[i] += b->rowners[i-1];
118279bdfe76SSatish Balay   }
118379bdfe76SSatish Balay   b->rstart = b->rowners[b->rank];
118479bdfe76SSatish Balay   b->rend   = b->rowners[b->rank+1];
118579bdfe76SSatish Balay   MPI_Allgather(&nbs,1,MPI_INT,b->cowners+1,1,MPI_INT,comm);
118679bdfe76SSatish Balay   b->cowners[0] = 0;
118779bdfe76SSatish Balay   for ( i=2; i<=b->size; i++ ) {
118879bdfe76SSatish Balay     b->cowners[i] += b->cowners[i-1];
118979bdfe76SSatish Balay   }
119079bdfe76SSatish Balay   b->cstart = b->cowners[b->rank];
119179bdfe76SSatish Balay   b->cend   = b->cowners[b->rank+1];
119279bdfe76SSatish Balay 
119379bdfe76SSatish Balay   if (d_nz == PETSC_DEFAULT) d_nz = 5;
119479bdfe76SSatish Balay   ierr = MatCreateSeqBAIJ(MPI_COMM_SELF,bs,m,n,d_nz,d_nnz,&b->A); CHKERRQ(ierr);
119579bdfe76SSatish Balay   PLogObjectParent(B,b->A);
119679bdfe76SSatish Balay   if (o_nz == PETSC_DEFAULT) o_nz = 0;
119779bdfe76SSatish Balay   ierr = MatCreateSeqBAIJ(MPI_COMM_SELF,bs,m,N,o_nz,o_nnz,&b->B); CHKERRQ(ierr);
119879bdfe76SSatish Balay   PLogObjectParent(B,b->B);
119979bdfe76SSatish Balay 
120079bdfe76SSatish Balay   /* build cache for off array entries formed */
120179bdfe76SSatish Balay   ierr = StashBuild_Private(&b->stash); CHKERRQ(ierr);
120279bdfe76SSatish Balay   b->colmap      = 0;
120379bdfe76SSatish Balay   b->garray      = 0;
120479bdfe76SSatish Balay   b->roworiented = 1;
120579bdfe76SSatish Balay 
120679bdfe76SSatish Balay   /* stuff used for matrix vector multiply */
120779bdfe76SSatish Balay   b->lvec      = 0;
120879bdfe76SSatish Balay   b->Mvctx     = 0;
120979bdfe76SSatish Balay 
121079bdfe76SSatish Balay   /* stuff for MatGetRow() */
121179bdfe76SSatish Balay   b->rowindices   = 0;
121279bdfe76SSatish Balay   b->rowvalues    = 0;
121379bdfe76SSatish Balay   b->getrowactive = PETSC_FALSE;
121479bdfe76SSatish Balay 
121579bdfe76SSatish Balay   *A = B;
121679bdfe76SSatish Balay   return 0;
121779bdfe76SSatish Balay }
12180ac07820SSatish Balay static int MatConvertSameType_MPIBAIJ(Mat matin,Mat *newmat,int cpvalues)
12190ac07820SSatish Balay {
12200ac07820SSatish Balay   Mat        mat;
12210ac07820SSatish Balay   Mat_MPIBAIJ *a,*oldmat = (Mat_MPIBAIJ *) matin->data;
12220ac07820SSatish Balay   int        ierr, len=0, flg;
12230ac07820SSatish Balay 
12240ac07820SSatish Balay   *newmat       = 0;
12250ac07820SSatish Balay   PetscHeaderCreate(mat,_Mat,MAT_COOKIE,MATMPIBAIJ,matin->comm);
12260ac07820SSatish Balay   PLogObjectCreate(mat);
12270ac07820SSatish Balay   mat->data       = (void *) (a = PetscNew(Mat_MPIBAIJ)); CHKPTRQ(a);
12280ac07820SSatish Balay   PetscMemcpy(&mat->ops,&MatOps,sizeof(struct _MatOps));
12290ac07820SSatish Balay   mat->destroy    = MatDestroy_MPIBAIJ;
12300ac07820SSatish Balay   mat->view       = MatView_MPIBAIJ;
12310ac07820SSatish Balay   mat->factor     = matin->factor;
12320ac07820SSatish Balay   mat->assembled  = PETSC_TRUE;
12330ac07820SSatish Balay 
12340ac07820SSatish Balay   a->m = mat->m   = oldmat->m;
12350ac07820SSatish Balay   a->n = mat->n   = oldmat->n;
12360ac07820SSatish Balay   a->M = mat->M   = oldmat->M;
12370ac07820SSatish Balay   a->N = mat->N   = oldmat->N;
12380ac07820SSatish Balay 
12390ac07820SSatish Balay   a->bs  = oldmat->bs;
12400ac07820SSatish Balay   a->bs2 = oldmat->bs2;
12410ac07820SSatish Balay   a->mbs = oldmat->mbs;
12420ac07820SSatish Balay   a->nbs = oldmat->nbs;
12430ac07820SSatish Balay   a->Mbs = oldmat->Mbs;
12440ac07820SSatish Balay   a->Nbs = oldmat->Nbs;
12450ac07820SSatish Balay 
12460ac07820SSatish Balay   a->rstart       = oldmat->rstart;
12470ac07820SSatish Balay   a->rend         = oldmat->rend;
12480ac07820SSatish Balay   a->cstart       = oldmat->cstart;
12490ac07820SSatish Balay   a->cend         = oldmat->cend;
12500ac07820SSatish Balay   a->size         = oldmat->size;
12510ac07820SSatish Balay   a->rank         = oldmat->rank;
12520ac07820SSatish Balay   a->insertmode   = NOT_SET_VALUES;
12530ac07820SSatish Balay   a->rowvalues    = 0;
12540ac07820SSatish Balay   a->getrowactive = PETSC_FALSE;
12550ac07820SSatish Balay 
12560ac07820SSatish Balay   a->rowners = (int *) PetscMalloc(2*(a->size+2)*sizeof(int)); CHKPTRQ(a->rowners);
12570ac07820SSatish Balay   PLogObjectMemory(mat,2*(a->size+2)*sizeof(int)+sizeof(struct _Mat)+sizeof(Mat_MPIBAIJ));
12580ac07820SSatish Balay   a->cowners = a->rowners + a->size + 2;
12590ac07820SSatish Balay   PetscMemcpy(a->rowners,oldmat->rowners,2*(a->size+2)*sizeof(int));
12600ac07820SSatish Balay   ierr = StashInitialize_Private(&a->stash); CHKERRQ(ierr);
12610ac07820SSatish Balay   if (oldmat->colmap) {
12620ac07820SSatish Balay     a->colmap = (int *) PetscMalloc((a->Nbs)*sizeof(int));CHKPTRQ(a->colmap);
12630ac07820SSatish Balay     PLogObjectMemory(mat,(a->Nbs)*sizeof(int));
12640ac07820SSatish Balay     PetscMemcpy(a->colmap,oldmat->colmap,(a->Nbs)*sizeof(int));
12650ac07820SSatish Balay   } else a->colmap = 0;
12660ac07820SSatish Balay   if (oldmat->garray && (len = ((Mat_SeqBAIJ *) (oldmat->B->data))->nbs)) {
12670ac07820SSatish Balay     a->garray = (int *) PetscMalloc(len*sizeof(int)); CHKPTRQ(a->garray);
12680ac07820SSatish Balay     PLogObjectMemory(mat,len*sizeof(int));
12690ac07820SSatish Balay     PetscMemcpy(a->garray,oldmat->garray,len*sizeof(int));
12700ac07820SSatish Balay   } else a->garray = 0;
12710ac07820SSatish Balay 
12720ac07820SSatish Balay   ierr =  VecDuplicate(oldmat->lvec,&a->lvec); CHKERRQ(ierr);
12730ac07820SSatish Balay   PLogObjectParent(mat,a->lvec);
12740ac07820SSatish Balay   ierr =  VecScatterCopy(oldmat->Mvctx,&a->Mvctx); CHKERRQ(ierr);
12750ac07820SSatish Balay   PLogObjectParent(mat,a->Mvctx);
12760ac07820SSatish Balay   ierr =  MatConvert(oldmat->A,MATSAME,&a->A); CHKERRQ(ierr);
12770ac07820SSatish Balay   PLogObjectParent(mat,a->A);
12780ac07820SSatish Balay   ierr =  MatConvert(oldmat->B,MATSAME,&a->B); CHKERRQ(ierr);
12790ac07820SSatish Balay   PLogObjectParent(mat,a->B);
12800ac07820SSatish Balay   ierr = OptionsHasName(PETSC_NULL,"-help",&flg); CHKERRQ(ierr);
12810ac07820SSatish Balay   if (flg) {
12820ac07820SSatish Balay     ierr = MatPrintHelp(mat); CHKERRQ(ierr);
12830ac07820SSatish Balay   }
12840ac07820SSatish Balay   *newmat = mat;
12850ac07820SSatish Balay   return 0;
12860ac07820SSatish Balay }
128757b952d6SSatish Balay 
128857b952d6SSatish Balay #include "sys.h"
128957b952d6SSatish Balay 
129057b952d6SSatish Balay int MatLoad_MPIBAIJ(Viewer viewer,MatType type,Mat *newmat)
129157b952d6SSatish Balay {
129257b952d6SSatish Balay   Mat          A;
129357b952d6SSatish Balay   int          i, nz, ierr, j,rstart, rend, fd;
129457b952d6SSatish Balay   Scalar       *vals,*buf;
129557b952d6SSatish Balay   MPI_Comm     comm = ((PetscObject)viewer)->comm;
129657b952d6SSatish Balay   MPI_Status   status;
1297cee3aa6bSSatish Balay   int          header[4],rank,size,*rowlengths = 0,M,N,m,*rowners,*browners,maxnz,*cols;
129857b952d6SSatish Balay   int          *locrowlens,*sndcounts = 0,*procsnz = 0, jj,*mycols,*ibuf;
129957b952d6SSatish Balay   int          flg,tag = ((PetscObject)viewer)->tag,bs=1,bs2,Mbs,mbs,extra_rows;
130057b952d6SSatish Balay   int          *dlens,*odlens,*mask,*masked1,*masked2,rowcount,odcount;
130157b952d6SSatish Balay   int          dcount,kmax,k,nzcount,tmp;
130257b952d6SSatish Balay 
130357b952d6SSatish Balay 
130457b952d6SSatish Balay   ierr = OptionsGetInt(PETSC_NULL,"-matload_block_size",&bs,&flg);CHKERRQ(ierr);
130557b952d6SSatish Balay   bs2  = bs*bs;
130657b952d6SSatish Balay 
130757b952d6SSatish Balay   MPI_Comm_size(comm,&size); MPI_Comm_rank(comm,&rank);
130857b952d6SSatish Balay   if (!rank) {
130957b952d6SSatish Balay     ierr = ViewerBinaryGetDescriptor(viewer,&fd); CHKERRQ(ierr);
131057b952d6SSatish Balay     ierr = PetscBinaryRead(fd,(char *)header,4,BINARY_INT); CHKERRQ(ierr);
1311cee3aa6bSSatish Balay     if (header[0] != MAT_COOKIE) SETERRQ(1,"MatLoad_MPIBAIJ:not matrix object");
131257b952d6SSatish Balay   }
131357b952d6SSatish Balay 
131457b952d6SSatish Balay   MPI_Bcast(header+1,3,MPI_INT,0,comm);
131557b952d6SSatish Balay   M = header[1]; N = header[2];
131657b952d6SSatish Balay 
131757b952d6SSatish Balay 
131857b952d6SSatish Balay   if (M != N) SETERRQ(1,"MatLoad_SeqBAIJ:Can only do square matrices");
131957b952d6SSatish Balay 
132057b952d6SSatish Balay   /*
132157b952d6SSatish Balay      This code adds extra rows to make sure the number of rows is
132257b952d6SSatish Balay      divisible by the blocksize
132357b952d6SSatish Balay   */
132457b952d6SSatish Balay   Mbs        = M/bs;
132557b952d6SSatish Balay   extra_rows = bs - M + bs*(Mbs);
132657b952d6SSatish Balay   if (extra_rows == bs) extra_rows = 0;
132757b952d6SSatish Balay   else                  Mbs++;
132857b952d6SSatish Balay   if (extra_rows &&!rank) {
132957b952d6SSatish Balay     PLogInfo(0,"MatLoad_SeqBAIJ:Padding loaded matrix to match blocksize");
133057b952d6SSatish Balay   }
133157b952d6SSatish Balay   /* determine ownership of all rows */
133257b952d6SSatish Balay   mbs = Mbs/size + ((Mbs % size) > rank);
133357b952d6SSatish Balay   m   = mbs * bs;
1334cee3aa6bSSatish Balay   rowners = (int *) PetscMalloc(2*(size+2)*sizeof(int)); CHKPTRQ(rowners);
1335cee3aa6bSSatish Balay   browners = rowners + size + 1;
133657b952d6SSatish Balay   MPI_Allgather(&mbs,1,MPI_INT,rowners+1,1,MPI_INT,comm);
133757b952d6SSatish Balay   rowners[0] = 0;
1338cee3aa6bSSatish Balay   for ( i=2; i<=size; i++ ) rowners[i] += rowners[i-1];
1339cee3aa6bSSatish Balay   for ( i=0; i<=size;  i++ ) browners[i] = rowners[i]*bs;
134057b952d6SSatish Balay   rstart = rowners[rank];
134157b952d6SSatish Balay   rend   = rowners[rank+1];
134257b952d6SSatish Balay 
134357b952d6SSatish Balay   /* distribute row lengths to all processors */
134457b952d6SSatish Balay   locrowlens = (int*) PetscMalloc( (rend-rstart)*bs*sizeof(int) ); CHKPTRQ(locrowlens);
134557b952d6SSatish Balay   if (!rank) {
134657b952d6SSatish Balay     rowlengths = (int*) PetscMalloc( (M+extra_rows)*sizeof(int) ); CHKPTRQ(rowlengths);
134757b952d6SSatish Balay     ierr = PetscBinaryRead(fd,rowlengths,M,BINARY_INT); CHKERRQ(ierr);
134857b952d6SSatish Balay     for ( i=0; i<extra_rows; i++ ) rowlengths[M+i] = 1;
134957b952d6SSatish Balay     sndcounts = (int*) PetscMalloc( size*sizeof(int) ); CHKPTRQ(sndcounts);
1350cee3aa6bSSatish Balay     for ( i=0; i<size; i++ ) sndcounts[i] = browners[i+1] - browners[i];
1351cee3aa6bSSatish Balay     MPI_Scatterv(rowlengths,sndcounts,browners,MPI_INT,locrowlens,(rend-rstart)*bs,MPI_INT,0,comm);
135257b952d6SSatish Balay     PetscFree(sndcounts);
135357b952d6SSatish Balay   }
135457b952d6SSatish Balay   else {
135557b952d6SSatish Balay     MPI_Scatterv(0,0,0,MPI_INT,locrowlens,(rend-rstart)*bs,MPI_INT, 0,comm);
135657b952d6SSatish Balay   }
135757b952d6SSatish Balay 
135857b952d6SSatish Balay   if (!rank) {
135957b952d6SSatish Balay     /* calculate the number of nonzeros on each processor */
136057b952d6SSatish Balay     procsnz = (int*) PetscMalloc( size*sizeof(int) ); CHKPTRQ(procsnz);
136157b952d6SSatish Balay     PetscMemzero(procsnz,size*sizeof(int));
136257b952d6SSatish Balay     for ( i=0; i<size; i++ ) {
136357b952d6SSatish Balay       for ( j=rowners[i]*bs; j< rowners[i+1]*bs; j++ ) {
136457b952d6SSatish Balay         procsnz[i] += rowlengths[j];
136557b952d6SSatish Balay       }
136657b952d6SSatish Balay     }
136757b952d6SSatish Balay     PetscFree(rowlengths);
136857b952d6SSatish Balay 
136957b952d6SSatish Balay     /* determine max buffer needed and allocate it */
137057b952d6SSatish Balay     maxnz = 0;
137157b952d6SSatish Balay     for ( i=0; i<size; i++ ) {
137257b952d6SSatish Balay       maxnz = PetscMax(maxnz,procsnz[i]);
137357b952d6SSatish Balay     }
137457b952d6SSatish Balay     cols = (int *) PetscMalloc( maxnz*sizeof(int) ); CHKPTRQ(cols);
137557b952d6SSatish Balay 
137657b952d6SSatish Balay     /* read in my part of the matrix column indices  */
137757b952d6SSatish Balay     nz = procsnz[0];
137857b952d6SSatish Balay     ibuf = (int *) PetscMalloc( nz*sizeof(int) ); CHKPTRQ(ibuf);
137957b952d6SSatish Balay     mycols = ibuf;
1380cee3aa6bSSatish Balay     if (size == 1)  nz -= extra_rows;
138157b952d6SSatish Balay     ierr = PetscBinaryRead(fd,mycols,nz,BINARY_INT); CHKERRQ(ierr);
1382cee3aa6bSSatish Balay     if (size == 1)  for (i=0; i< extra_rows; i++) { mycols[nz+i] = M+i; }
1383cee3aa6bSSatish Balay 
138457b952d6SSatish Balay     /* read in every ones (except the last) and ship off */
138557b952d6SSatish Balay     for ( i=1; i<size-1; i++ ) {
138657b952d6SSatish Balay       nz = procsnz[i];
138757b952d6SSatish Balay       ierr = PetscBinaryRead(fd,cols,nz,BINARY_INT); CHKERRQ(ierr);
138857b952d6SSatish Balay       MPI_Send(cols,nz,MPI_INT,i,tag,comm);
138957b952d6SSatish Balay     }
139057b952d6SSatish Balay     /* read in the stuff for the last proc */
139157b952d6SSatish Balay     if ( size != 1 ) {
139257b952d6SSatish Balay       nz = procsnz[size-1] - extra_rows;  /* the extra rows are not on the disk */
139357b952d6SSatish Balay       ierr = PetscBinaryRead(fd,cols,nz,BINARY_INT); CHKERRQ(ierr);
139457b952d6SSatish Balay       for ( i=0; i<extra_rows; i++ ) cols[nz+i] = M+i;
1395cee3aa6bSSatish Balay       MPI_Send(cols,nz+extra_rows,MPI_INT,size-1,tag,comm);
139657b952d6SSatish Balay     }
139757b952d6SSatish Balay     PetscFree(cols);
139857b952d6SSatish Balay   }
139957b952d6SSatish Balay   else {
140057b952d6SSatish Balay     /* determine buffer space needed for message */
140157b952d6SSatish Balay     nz = 0;
140257b952d6SSatish Balay     for ( i=0; i<m; i++ ) {
140357b952d6SSatish Balay       nz += locrowlens[i];
140457b952d6SSatish Balay     }
140557b952d6SSatish Balay     ibuf = (int*) PetscMalloc( nz*sizeof(int) ); CHKPTRQ(ibuf);
140657b952d6SSatish Balay     mycols = ibuf;
140757b952d6SSatish Balay     /* receive message of column indices*/
140857b952d6SSatish Balay     MPI_Recv(mycols,nz,MPI_INT,0,tag,comm,&status);
140957b952d6SSatish Balay     MPI_Get_count(&status,MPI_INT,&maxnz);
1410cee3aa6bSSatish Balay     if (maxnz != nz) SETERRQ(1,"MatLoad_MPIBAIJ:something is wrong with file");
141157b952d6SSatish Balay   }
141257b952d6SSatish Balay 
141357b952d6SSatish Balay   /* loop over local rows, determining number of off diagonal entries */
1414cee3aa6bSSatish Balay   dlens  = (int *) PetscMalloc( 2*(rend-rstart+1)*sizeof(int) ); CHKPTRQ(dlens);
1415cee3aa6bSSatish Balay   odlens = dlens + (rend-rstart);
141657b952d6SSatish Balay   mask   = (int *) PetscMalloc( 3*Mbs*sizeof(int) ); CHKPTRQ(mask);
1417cee3aa6bSSatish Balay   PetscMemzero(mask,3*Mbs*sizeof(int));
141857b952d6SSatish Balay   masked1 = mask    + Mbs;
141957b952d6SSatish Balay   masked2 = masked1 + Mbs;
142057b952d6SSatish Balay   rowcount = 0; nzcount = 0;
142157b952d6SSatish Balay   for ( i=0; i<mbs; i++ ) {
142257b952d6SSatish Balay     dcount  = 0;
142357b952d6SSatish Balay     odcount = 0;
142457b952d6SSatish Balay     for ( j=0; j<bs; j++ ) {
142557b952d6SSatish Balay       kmax = locrowlens[rowcount];
142657b952d6SSatish Balay       for ( k=0; k<kmax; k++ ) {
142757b952d6SSatish Balay         tmp = mycols[nzcount++]/bs;
142857b952d6SSatish Balay         if (!mask[tmp]) {
142957b952d6SSatish Balay           mask[tmp] = 1;
143057b952d6SSatish Balay           if (tmp < rstart || tmp >= rend ) masked2[odcount++] = tmp;
143157b952d6SSatish Balay           else masked1[dcount++] = tmp;
143257b952d6SSatish Balay         }
143357b952d6SSatish Balay       }
143457b952d6SSatish Balay       rowcount++;
143557b952d6SSatish Balay     }
1436cee3aa6bSSatish Balay 
143757b952d6SSatish Balay     dlens[i]  = dcount;
143857b952d6SSatish Balay     odlens[i] = odcount;
1439cee3aa6bSSatish Balay 
144057b952d6SSatish Balay     /* zero out the mask elements we set */
144157b952d6SSatish Balay     for ( j=0; j<dcount; j++ ) mask[masked1[j]] = 0;
144257b952d6SSatish Balay     for ( j=0; j<odcount; j++ ) mask[masked2[j]] = 0;
144357b952d6SSatish Balay   }
1444cee3aa6bSSatish Balay 
144557b952d6SSatish Balay   /* create our matrix */
144657b952d6SSatish Balay   ierr = MatCreateMPIBAIJ(comm,bs,m,PETSC_DECIDE,M+extra_rows,N+extra_rows,0,dlens,0,odlens,newmat);CHKERRQ(ierr);
144757b952d6SSatish Balay   A = *newmat;
14486d4a8577SBarry Smith   MatSetOption(A,MAT_COLUMNS_SORTED);
144957b952d6SSatish Balay 
145057b952d6SSatish Balay   if (!rank) {
145157b952d6SSatish Balay     buf = (Scalar *) PetscMalloc( maxnz*sizeof(Scalar) ); CHKPTRQ(buf);
145257b952d6SSatish Balay     /* read in my part of the matrix numerical values  */
145357b952d6SSatish Balay     nz = procsnz[0];
145457b952d6SSatish Balay     vals = buf;
1455cee3aa6bSSatish Balay     mycols = ibuf;
1456cee3aa6bSSatish Balay     if (size == 1)  nz -= extra_rows;
145757b952d6SSatish Balay     ierr = PetscBinaryRead(fd,vals,nz,BINARY_SCALAR); CHKERRQ(ierr);
1458cee3aa6bSSatish Balay     if (size == 1)  for (i=0; i< extra_rows; i++) { vals[nz+i] = 1.0; }
145957b952d6SSatish Balay     /* insert into matrix */
146057b952d6SSatish Balay     jj      = rstart*bs;
146157b952d6SSatish Balay     for ( i=0; i<m; i++ ) {
146257b952d6SSatish Balay       ierr = MatSetValues(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr);
146357b952d6SSatish Balay       mycols += locrowlens[i];
146457b952d6SSatish Balay       vals   += locrowlens[i];
146557b952d6SSatish Balay       jj++;
146657b952d6SSatish Balay     }
146757b952d6SSatish Balay     /* read in other processors( except the last one) and ship out */
146857b952d6SSatish Balay     for ( i=1; i<size-1; i++ ) {
146957b952d6SSatish Balay       nz = procsnz[i];
147057b952d6SSatish Balay       vals = buf;
147157b952d6SSatish Balay       ierr = PetscBinaryRead(fd,vals,nz,BINARY_SCALAR); CHKERRQ(ierr);
147257b952d6SSatish Balay       MPI_Send(vals,nz,MPIU_SCALAR,i,A->tag,comm);
147357b952d6SSatish Balay     }
147457b952d6SSatish Balay     /* the last proc */
147557b952d6SSatish Balay     if ( size != 1 ){
147657b952d6SSatish Balay       nz = procsnz[i] - extra_rows;
1477cee3aa6bSSatish Balay       vals = buf;
147857b952d6SSatish Balay       ierr = PetscBinaryRead(fd,vals,nz,BINARY_SCALAR); CHKERRQ(ierr);
147957b952d6SSatish Balay       for ( i=0; i<extra_rows; i++ ) vals[nz+i] = 1.0;
1480cee3aa6bSSatish Balay       MPI_Send(vals,nz+extra_rows,MPIU_SCALAR,size-1,A->tag,comm);
148157b952d6SSatish Balay     }
148257b952d6SSatish Balay     PetscFree(procsnz);
148357b952d6SSatish Balay   }
148457b952d6SSatish Balay   else {
148557b952d6SSatish Balay     /* receive numeric values */
148657b952d6SSatish Balay     buf = (Scalar*) PetscMalloc( nz*sizeof(Scalar) ); CHKPTRQ(buf);
148757b952d6SSatish Balay 
148857b952d6SSatish Balay     /* receive message of values*/
148957b952d6SSatish Balay     vals = buf;
1490cee3aa6bSSatish Balay     mycols = ibuf;
149157b952d6SSatish Balay     MPI_Recv(vals,nz,MPIU_SCALAR,0,A->tag,comm,&status);
149257b952d6SSatish Balay     MPI_Get_count(&status,MPIU_SCALAR,&maxnz);
1493cee3aa6bSSatish Balay     if (maxnz != nz) SETERRQ(1,"MatLoad_MPIBAIJ:something is wrong with file");
149457b952d6SSatish Balay 
149557b952d6SSatish Balay     /* insert into matrix */
149657b952d6SSatish Balay     jj      = rstart*bs;
1497cee3aa6bSSatish Balay     for ( i=0; i<m; i++ ) {
149857b952d6SSatish Balay       ierr = MatSetValues(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr);
149957b952d6SSatish Balay       mycols += locrowlens[i];
150057b952d6SSatish Balay       vals   += locrowlens[i];
150157b952d6SSatish Balay       jj++;
150257b952d6SSatish Balay     }
150357b952d6SSatish Balay   }
150457b952d6SSatish Balay   PetscFree(locrowlens);
150557b952d6SSatish Balay   PetscFree(buf);
150657b952d6SSatish Balay   PetscFree(ibuf);
150757b952d6SSatish Balay   PetscFree(rowners);
150857b952d6SSatish Balay   PetscFree(dlens);
1509cee3aa6bSSatish Balay   PetscFree(mask);
15106d4a8577SBarry Smith   ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY); CHKERRQ(ierr);
15116d4a8577SBarry Smith   ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY); CHKERRQ(ierr);
151257b952d6SSatish Balay   return 0;
151357b952d6SSatish Balay }
151457b952d6SSatish Balay 
151557b952d6SSatish Balay 
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