xref: /petsc/src/mat/impls/baij/mpi/mpibaij.c (revision 910ba992ec3971c61c49352ecba92a2a32ff963f)
1be1d678aSKris Buschelman #define PETSCMAT_DLL
279bdfe76SSatish Balay 
3e090d566SSatish Balay #include "src/mat/impls/baij/mpi/mpibaij.h"   /*I  "petscmat.h"  I*/
479bdfe76SSatish Balay 
5dfbe8321SBarry Smith EXTERN PetscErrorCode MatSetUpMultiply_MPIBAIJ(Mat);
6dfbe8321SBarry Smith EXTERN PetscErrorCode DisAssemble_MPIBAIJ(Mat);
7b24ad042SBarry Smith EXTERN PetscErrorCode MatIncreaseOverlap_MPIBAIJ(Mat,PetscInt,IS[],PetscInt);
8b24ad042SBarry Smith EXTERN PetscErrorCode MatGetSubMatrices_MPIBAIJ(Mat,PetscInt,const IS[],const IS[],MatReuse,Mat *[]);
9b24ad042SBarry Smith EXTERN PetscErrorCode MatGetValues_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt [],PetscScalar []);
10b24ad042SBarry Smith EXTERN PetscErrorCode MatSetValues_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt [],const PetscScalar [],InsertMode);
11b24ad042SBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode);
12b24ad042SBarry Smith EXTERN PetscErrorCode MatGetRow_SeqBAIJ(Mat,PetscInt,PetscInt*,PetscInt*[],PetscScalar*[]);
13b24ad042SBarry Smith EXTERN PetscErrorCode MatRestoreRow_SeqBAIJ(Mat,PetscInt,PetscInt*,PetscInt*[],PetscScalar*[]);
14dfbe8321SBarry Smith EXTERN PetscErrorCode MatPrintHelp_SeqBAIJ(Mat);
15f4df32b1SMatthew Knepley EXTERN PetscErrorCode MatZeroRows_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscScalar);
1693fea6afSBarry Smith 
1793fea6afSBarry Smith /*  UGLY, ugly, ugly
1887828ca2SBarry Smith    When MatScalar == PetscScalar the function MatSetValuesBlocked_MPIBAIJ_MatScalar() does
1993fea6afSBarry Smith    not exist. Otherwise ..._MatScalar() takes matrix elements in single precision and
2093fea6afSBarry Smith    inserts them into the single precision data structure. The function MatSetValuesBlocked_MPIBAIJ()
2193fea6afSBarry Smith    converts the entries into single precision and then calls ..._MatScalar() to put them
2293fea6afSBarry Smith    into the single precision data structures.
2393fea6afSBarry Smith */
2493fea6afSBarry Smith #if defined(PETSC_USE_MAT_SINGLE)
25b24ad042SBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_SeqBAIJ_MatScalar(Mat,PetscInt,const PetscInt*,PetscInt,const PetscInt*,const MatScalar*,InsertMode);
26b24ad042SBarry Smith EXTERN PetscErrorCode MatSetValues_MPIBAIJ_MatScalar(Mat,PetscInt,const PetscInt*,PetscInt,const PetscInt*,const MatScalar*,InsertMode);
27b24ad042SBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_MPIBAIJ_MatScalar(Mat,PetscInt,const PetscInt*,PetscInt,const PetscInt*,const MatScalar*,InsertMode);
28b24ad042SBarry Smith EXTERN PetscErrorCode MatSetValues_MPIBAIJ_HT_MatScalar(Mat,PetscInt,const PetscInt*,PetscInt,const PetscInt*,const MatScalar*,InsertMode);
29b24ad042SBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_MPIBAIJ_HT_MatScalar(Mat,PetscInt,const PetscInt*,PetscInt,const PetscInt*,const MatScalar*,InsertMode);
3093fea6afSBarry Smith #else
316fa18ffdSBarry Smith #define MatSetValuesBlocked_SeqBAIJ_MatScalar      MatSetValuesBlocked_SeqBAIJ
3293fea6afSBarry Smith #define MatSetValues_MPIBAIJ_MatScalar             MatSetValues_MPIBAIJ
3393fea6afSBarry Smith #define MatSetValuesBlocked_MPIBAIJ_MatScalar      MatSetValuesBlocked_MPIBAIJ
346fa18ffdSBarry Smith #define MatSetValues_MPIBAIJ_HT_MatScalar          MatSetValues_MPIBAIJ_HT
356fa18ffdSBarry Smith #define MatSetValuesBlocked_MPIBAIJ_HT_MatScalar   MatSetValuesBlocked_MPIBAIJ_HT
3693fea6afSBarry Smith #endif
373b2fbd54SBarry Smith 
384a2ae208SSatish Balay #undef __FUNCT__
394a2ae208SSatish Balay #define __FUNCT__ "MatGetRowMax_MPIBAIJ"
40dfbe8321SBarry Smith PetscErrorCode MatGetRowMax_MPIBAIJ(Mat A,Vec v)
417843d17aSBarry Smith {
427843d17aSBarry Smith   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)A->data;
43dfbe8321SBarry Smith   PetscErrorCode ierr;
44b24ad042SBarry Smith   PetscInt       i;
4587828ca2SBarry Smith   PetscScalar    *va,*vb;
467843d17aSBarry Smith   Vec            vtmp;
477843d17aSBarry Smith 
487843d17aSBarry Smith   PetscFunctionBegin;
497843d17aSBarry Smith 
507843d17aSBarry Smith   ierr = MatGetRowMax(a->A,v);CHKERRQ(ierr);
511ebc52fbSHong Zhang   ierr = VecGetArray(v,&va);CHKERRQ(ierr);
527843d17aSBarry Smith 
53899cda47SBarry Smith   ierr = VecCreateSeq(PETSC_COMM_SELF,A->rmap.n,&vtmp);CHKERRQ(ierr);
547843d17aSBarry Smith   ierr = MatGetRowMax(a->B,vtmp);CHKERRQ(ierr);
551ebc52fbSHong Zhang   ierr = VecGetArray(vtmp,&vb);CHKERRQ(ierr);
567843d17aSBarry Smith 
57899cda47SBarry Smith   for (i=0; i<A->rmap.n; i++){
58273d9f13SBarry Smith     if (PetscAbsScalar(va[i]) < PetscAbsScalar(vb[i])) va[i] = vb[i];
597843d17aSBarry Smith   }
607843d17aSBarry Smith 
611ebc52fbSHong Zhang   ierr = VecRestoreArray(v,&va);CHKERRQ(ierr);
621ebc52fbSHong Zhang   ierr = VecRestoreArray(vtmp,&vb);CHKERRQ(ierr);
63ac355199SBarry Smith   ierr = VecDestroy(vtmp);CHKERRQ(ierr);
647843d17aSBarry Smith 
657843d17aSBarry Smith   PetscFunctionReturn(0);
667843d17aSBarry Smith }
677843d17aSBarry Smith 
687fc3c18eSBarry Smith EXTERN_C_BEGIN
694a2ae208SSatish Balay #undef __FUNCT__
704a2ae208SSatish Balay #define __FUNCT__ "MatStoreValues_MPIBAIJ"
71be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatStoreValues_MPIBAIJ(Mat mat)
727fc3c18eSBarry Smith {
737fc3c18eSBarry Smith   Mat_MPIBAIJ    *aij = (Mat_MPIBAIJ *)mat->data;
74dfbe8321SBarry Smith   PetscErrorCode ierr;
757fc3c18eSBarry Smith 
767fc3c18eSBarry Smith   PetscFunctionBegin;
777fc3c18eSBarry Smith   ierr = MatStoreValues(aij->A);CHKERRQ(ierr);
787fc3c18eSBarry Smith   ierr = MatStoreValues(aij->B);CHKERRQ(ierr);
797fc3c18eSBarry Smith   PetscFunctionReturn(0);
807fc3c18eSBarry Smith }
817fc3c18eSBarry Smith EXTERN_C_END
827fc3c18eSBarry Smith 
837fc3c18eSBarry Smith EXTERN_C_BEGIN
844a2ae208SSatish Balay #undef __FUNCT__
854a2ae208SSatish Balay #define __FUNCT__ "MatRetrieveValues_MPIBAIJ"
86be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatRetrieveValues_MPIBAIJ(Mat mat)
877fc3c18eSBarry Smith {
887fc3c18eSBarry Smith   Mat_MPIBAIJ    *aij = (Mat_MPIBAIJ *)mat->data;
89dfbe8321SBarry Smith   PetscErrorCode ierr;
907fc3c18eSBarry Smith 
917fc3c18eSBarry Smith   PetscFunctionBegin;
927fc3c18eSBarry Smith   ierr = MatRetrieveValues(aij->A);CHKERRQ(ierr);
937fc3c18eSBarry Smith   ierr = MatRetrieveValues(aij->B);CHKERRQ(ierr);
947fc3c18eSBarry Smith   PetscFunctionReturn(0);
957fc3c18eSBarry Smith }
967fc3c18eSBarry Smith EXTERN_C_END
977fc3c18eSBarry Smith 
98537820f0SBarry Smith /*
99537820f0SBarry Smith      Local utility routine that creates a mapping from the global column
10057b952d6SSatish Balay    number to the local number in the off-diagonal part of the local
10157b952d6SSatish Balay    storage of the matrix.  This is done in a non scable way since the
10257b952d6SSatish Balay    length of colmap equals the global matrix length.
10357b952d6SSatish Balay */
1044a2ae208SSatish Balay #undef __FUNCT__
1054a2ae208SSatish Balay #define __FUNCT__ "CreateColmap_MPIBAIJ_Private"
106dfbe8321SBarry Smith PetscErrorCode CreateColmap_MPIBAIJ_Private(Mat mat)
10757b952d6SSatish Balay {
10857b952d6SSatish Balay   Mat_MPIBAIJ    *baij = (Mat_MPIBAIJ*)mat->data;
10957b952d6SSatish Balay   Mat_SeqBAIJ    *B = (Mat_SeqBAIJ*)baij->B->data;
1106849ba73SBarry Smith   PetscErrorCode ierr;
111899cda47SBarry Smith   PetscInt       nbs = B->nbs,i,bs=mat->rmap.bs;
11257b952d6SSatish Balay 
113d64ed03dSBarry Smith   PetscFunctionBegin;
114aa482453SBarry Smith #if defined (PETSC_USE_CTABLE)
115f14a1c24SBarry Smith   ierr = PetscTableCreate(baij->nbs,&baij->colmap);CHKERRQ(ierr);
11648e59246SSatish Balay   for (i=0; i<nbs; i++){
1170f5bd95cSBarry Smith     ierr = PetscTableAdd(baij->colmap,baij->garray[i]+1,i*bs+1);CHKERRQ(ierr);
11848e59246SSatish Balay   }
11948e59246SSatish Balay #else
120b24ad042SBarry Smith   ierr = PetscMalloc((baij->Nbs+1)*sizeof(PetscInt),&baij->colmap);CHKERRQ(ierr);
12152e6d16bSBarry Smith   ierr = PetscLogObjectMemory(mat,baij->Nbs*sizeof(PetscInt));CHKERRQ(ierr);
122b24ad042SBarry Smith   ierr = PetscMemzero(baij->colmap,baij->Nbs*sizeof(PetscInt));CHKERRQ(ierr);
123928fc39bSSatish Balay   for (i=0; i<nbs; i++) baij->colmap[baij->garray[i]] = i*bs+1;
12448e59246SSatish Balay #endif
1253a40ed3dSBarry Smith   PetscFunctionReturn(0);
12657b952d6SSatish Balay }
12757b952d6SSatish Balay 
12880c1aa95SSatish Balay #define CHUNKSIZE  10
12980c1aa95SSatish Balay 
130f5e9677aSSatish Balay #define  MatSetValues_SeqBAIJ_A_Private(row,col,value,addv) \
13180c1aa95SSatish Balay { \
13280c1aa95SSatish Balay  \
13380c1aa95SSatish Balay     brow = row/bs;  \
13480c1aa95SSatish Balay     rp   = aj + ai[brow]; ap = aa + bs2*ai[brow]; \
135ac7a638eSSatish Balay     rmax = aimax[brow]; nrow = ailen[brow]; \
13680c1aa95SSatish Balay       bcol = col/bs; \
13780c1aa95SSatish Balay       ridx = row % bs; cidx = col % bs; \
138ab26458aSBarry Smith       low = 0; high = nrow; \
139ab26458aSBarry Smith       while (high-low > 3) { \
140ab26458aSBarry Smith         t = (low+high)/2; \
141ab26458aSBarry Smith         if (rp[t] > bcol) high = t; \
142ab26458aSBarry Smith         else              low  = t; \
143ab26458aSBarry Smith       } \
144ab26458aSBarry Smith       for (_i=low; _i<high; _i++) { \
14580c1aa95SSatish Balay         if (rp[_i] > bcol) break; \
14680c1aa95SSatish Balay         if (rp[_i] == bcol) { \
14780c1aa95SSatish Balay           bap  = ap +  bs2*_i + bs*cidx + ridx; \
148eada6651SSatish Balay           if (addv == ADD_VALUES) *bap += value;  \
149eada6651SSatish Balay           else                    *bap  = value;  \
150ac7a638eSSatish Balay           goto a_noinsert; \
15180c1aa95SSatish Balay         } \
15280c1aa95SSatish Balay       } \
15389280ab3SLois Curfman McInnes       if (a->nonew == 1) goto a_noinsert; \
154085a36d4SBarry Smith       if (a->nonew == -1) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \
155ed1caa07SMatthew Knepley       MatSeqXAIJReallocateAIJ(a,bs2,nrow,brow,bcol,rmax,aa,ai,aj,a->mbs,rp,ap,aimax,a->nonew); \
15680c1aa95SSatish Balay       N = nrow++ - 1;  \
15780c1aa95SSatish Balay       /* shift up all the later entries in this row */ \
15880c1aa95SSatish Balay       for (ii=N; ii>=_i; ii--) { \
15980c1aa95SSatish Balay         rp[ii+1] = rp[ii]; \
1603eda8832SBarry Smith         ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \
16180c1aa95SSatish Balay       } \
1623eda8832SBarry Smith       if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr); }  \
16380c1aa95SSatish Balay       rp[_i]                      = bcol;  \
16480c1aa95SSatish Balay       ap[bs2*_i + bs*cidx + ridx] = value;  \
165ac7a638eSSatish Balay       a_noinsert:; \
16680c1aa95SSatish Balay     ailen[brow] = nrow; \
16780c1aa95SSatish Balay }
16857b952d6SSatish Balay 
169ac7a638eSSatish Balay #define  MatSetValues_SeqBAIJ_B_Private(row,col,value,addv) \
170ac7a638eSSatish Balay { \
171ac7a638eSSatish Balay     brow = row/bs;  \
172ac7a638eSSatish Balay     rp   = bj + bi[brow]; ap = ba + bs2*bi[brow]; \
173ac7a638eSSatish Balay     rmax = bimax[brow]; nrow = bilen[brow]; \
174ac7a638eSSatish Balay       bcol = col/bs; \
175ac7a638eSSatish Balay       ridx = row % bs; cidx = col % bs; \
176ac7a638eSSatish Balay       low = 0; high = nrow; \
177ac7a638eSSatish Balay       while (high-low > 3) { \
178ac7a638eSSatish Balay         t = (low+high)/2; \
179ac7a638eSSatish Balay         if (rp[t] > bcol) high = t; \
180ac7a638eSSatish Balay         else              low  = t; \
181ac7a638eSSatish Balay       } \
182ac7a638eSSatish Balay       for (_i=low; _i<high; _i++) { \
183ac7a638eSSatish Balay         if (rp[_i] > bcol) break; \
184ac7a638eSSatish Balay         if (rp[_i] == bcol) { \
185ac7a638eSSatish Balay           bap  = ap +  bs2*_i + bs*cidx + ridx; \
186ac7a638eSSatish Balay           if (addv == ADD_VALUES) *bap += value;  \
187ac7a638eSSatish Balay           else                    *bap  = value;  \
188ac7a638eSSatish Balay           goto b_noinsert; \
189ac7a638eSSatish Balay         } \
190ac7a638eSSatish Balay       } \
19189280ab3SLois Curfman McInnes       if (b->nonew == 1) goto b_noinsert; \
192085a36d4SBarry Smith       if (b->nonew == -1) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \
193ed1caa07SMatthew Knepley       MatSeqXAIJReallocateAIJ(b,bs2,nrow,brow,bcol,rmax,ba,bi,bj,b->mbs,rp,ap,bimax,b->nonew); \
194085a36d4SBarry Smith       CHKMEMQ;\
195ac7a638eSSatish Balay       N = nrow++ - 1;  \
196ac7a638eSSatish Balay       /* shift up all the later entries in this row */ \
197ac7a638eSSatish Balay       for (ii=N; ii>=_i; ii--) { \
198ac7a638eSSatish Balay         rp[ii+1] = rp[ii]; \
1993eda8832SBarry Smith         ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \
200ac7a638eSSatish Balay       } \
2013eda8832SBarry Smith       if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr);}  \
202ac7a638eSSatish Balay       rp[_i]                      = bcol;  \
203ac7a638eSSatish Balay       ap[bs2*_i + bs*cidx + ridx] = value;  \
204ac7a638eSSatish Balay       b_noinsert:; \
205ac7a638eSSatish Balay     bilen[brow] = nrow; \
206ac7a638eSSatish Balay }
207ac7a638eSSatish Balay 
20893fea6afSBarry Smith #if defined(PETSC_USE_MAT_SINGLE)
2094a2ae208SSatish Balay #undef __FUNCT__
2104a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_MPIBAIJ"
211b24ad042SBarry Smith PetscErrorCode MatSetValues_MPIBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv)
21257b952d6SSatish Balay {
2136fa18ffdSBarry Smith   Mat_MPIBAIJ    *b = (Mat_MPIBAIJ*)mat->data;
214dfbe8321SBarry Smith   PetscErrorCode ierr;
215b24ad042SBarry Smith   PetscInt       i,N = m*n;
2166fa18ffdSBarry Smith   MatScalar      *vsingle;
21793fea6afSBarry Smith 
21893fea6afSBarry Smith   PetscFunctionBegin;
2196fa18ffdSBarry Smith   if (N > b->setvalueslen) {
22005b42c5fSBarry Smith     ierr = PetscFree(b->setvaluescopy);CHKERRQ(ierr);
22182502324SSatish Balay     ierr = PetscMalloc(N*sizeof(MatScalar),&b->setvaluescopy);CHKERRQ(ierr);
2226fa18ffdSBarry Smith     b->setvalueslen  = N;
2236fa18ffdSBarry Smith   }
2246fa18ffdSBarry Smith   vsingle = b->setvaluescopy;
2256fa18ffdSBarry Smith 
22693fea6afSBarry Smith   for (i=0; i<N; i++) {
22793fea6afSBarry Smith     vsingle[i] = v[i];
22893fea6afSBarry Smith   }
22993fea6afSBarry Smith   ierr = MatSetValues_MPIBAIJ_MatScalar(mat,m,im,n,in,vsingle,addv);CHKERRQ(ierr);
23093fea6afSBarry Smith   PetscFunctionReturn(0);
23193fea6afSBarry Smith }
23293fea6afSBarry Smith 
2334a2ae208SSatish Balay #undef __FUNCT__
2344a2ae208SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_MPIBAIJ"
235b24ad042SBarry Smith PetscErrorCode MatSetValuesBlocked_MPIBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv)
23693fea6afSBarry Smith {
2376fa18ffdSBarry Smith   Mat_MPIBAIJ    *b = (Mat_MPIBAIJ*)mat->data;
238dfbe8321SBarry Smith   PetscErrorCode ierr;
239b24ad042SBarry Smith   PetscInt       i,N = m*n*b->bs2;
2406fa18ffdSBarry Smith   MatScalar      *vsingle;
24193fea6afSBarry Smith 
24293fea6afSBarry Smith   PetscFunctionBegin;
2436fa18ffdSBarry Smith   if (N > b->setvalueslen) {
24405b42c5fSBarry Smith     ierr = PetscFree(b->setvaluescopy);CHKERRQ(ierr);
24582502324SSatish Balay     ierr = PetscMalloc(N*sizeof(MatScalar),&b->setvaluescopy);CHKERRQ(ierr);
2466fa18ffdSBarry Smith     b->setvalueslen  = N;
2476fa18ffdSBarry Smith   }
2486fa18ffdSBarry Smith   vsingle = b->setvaluescopy;
24993fea6afSBarry Smith   for (i=0; i<N; i++) {
25093fea6afSBarry Smith     vsingle[i] = v[i];
25193fea6afSBarry Smith   }
25293fea6afSBarry Smith   ierr = MatSetValuesBlocked_MPIBAIJ_MatScalar(mat,m,im,n,in,vsingle,addv);CHKERRQ(ierr);
25393fea6afSBarry Smith   PetscFunctionReturn(0);
25493fea6afSBarry Smith }
2556fa18ffdSBarry Smith 
2564a2ae208SSatish Balay #undef __FUNCT__
2574a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_MPIBAIJ_HT"
258b24ad042SBarry Smith PetscErrorCode MatSetValues_MPIBAIJ_HT(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv)
2596fa18ffdSBarry Smith {
2606fa18ffdSBarry Smith   Mat_MPIBAIJ    *b = (Mat_MPIBAIJ*)mat->data;
261dfbe8321SBarry Smith   PetscErrorCode ierr;
262b24ad042SBarry Smith   PetscInt       i,N = m*n;
2636fa18ffdSBarry Smith   MatScalar      *vsingle;
2646fa18ffdSBarry Smith 
2656fa18ffdSBarry Smith   PetscFunctionBegin;
2666fa18ffdSBarry Smith   if (N > b->setvalueslen) {
26705b42c5fSBarry Smith     ierr = PetscFree(b->setvaluescopy);CHKERRQ(ierr);
26882502324SSatish Balay     ierr = PetscMalloc(N*sizeof(MatScalar),&b->setvaluescopy);CHKERRQ(ierr);
2696fa18ffdSBarry Smith     b->setvalueslen  = N;
2706fa18ffdSBarry Smith   }
2716fa18ffdSBarry Smith   vsingle = b->setvaluescopy;
2726fa18ffdSBarry Smith   for (i=0; i<N; i++) {
2736fa18ffdSBarry Smith     vsingle[i] = v[i];
2746fa18ffdSBarry Smith   }
2756fa18ffdSBarry Smith   ierr = MatSetValues_MPIBAIJ_HT_MatScalar(mat,m,im,n,in,vsingle,addv);CHKERRQ(ierr);
2766fa18ffdSBarry Smith   PetscFunctionReturn(0);
2776fa18ffdSBarry Smith }
2786fa18ffdSBarry Smith 
2794a2ae208SSatish Balay #undef __FUNCT__
2804a2ae208SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_MPIBAIJ_HT"
281b24ad042SBarry Smith PetscErrorCode MatSetValuesBlocked_MPIBAIJ_HT(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv)
2826fa18ffdSBarry Smith {
2836fa18ffdSBarry Smith   Mat_MPIBAIJ    *b = (Mat_MPIBAIJ*)mat->data;
284dfbe8321SBarry Smith   PetscErrorCode ierr;
285b24ad042SBarry Smith   PetscInt       i,N = m*n*b->bs2;
2866fa18ffdSBarry Smith   MatScalar      *vsingle;
2876fa18ffdSBarry Smith 
2886fa18ffdSBarry Smith   PetscFunctionBegin;
2896fa18ffdSBarry Smith   if (N > b->setvalueslen) {
29005b42c5fSBarry Smith     ierr = PetscFree(b->setvaluescopy);CHKERRQ(ierr);
29182502324SSatish Balay     ierr = PetscMalloc(N*sizeof(MatScalar),&b->setvaluescopy);CHKERRQ(ierr);
2926fa18ffdSBarry Smith     b->setvalueslen  = N;
2936fa18ffdSBarry Smith   }
2946fa18ffdSBarry Smith   vsingle = b->setvaluescopy;
2956fa18ffdSBarry Smith   for (i=0; i<N; i++) {
2966fa18ffdSBarry Smith     vsingle[i] = v[i];
2976fa18ffdSBarry Smith   }
2986fa18ffdSBarry Smith   ierr = MatSetValuesBlocked_MPIBAIJ_HT_MatScalar(mat,m,im,n,in,vsingle,addv);CHKERRQ(ierr);
2996fa18ffdSBarry Smith   PetscFunctionReturn(0);
3006fa18ffdSBarry Smith }
30193fea6afSBarry Smith #endif
30293fea6afSBarry Smith 
3034a2ae208SSatish Balay #undef __FUNCT__
304e03e44c9SSatish Balay #define __FUNCT__ "MatSetValues_MPIBAIJ_MatScalar"
305b24ad042SBarry Smith PetscErrorCode MatSetValues_MPIBAIJ_MatScalar(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const MatScalar v[],InsertMode addv)
30693fea6afSBarry Smith {
30757b952d6SSatish Balay   Mat_MPIBAIJ    *baij = (Mat_MPIBAIJ*)mat->data;
30893fea6afSBarry Smith   MatScalar      value;
309273d9f13SBarry Smith   PetscTruth     roworiented = baij->roworiented;
310dfbe8321SBarry Smith   PetscErrorCode ierr;
311b24ad042SBarry Smith   PetscInt       i,j,row,col;
312899cda47SBarry Smith   PetscInt       rstart_orig=mat->rmap.rstart;
313899cda47SBarry Smith   PetscInt       rend_orig=mat->rmap.rend,cstart_orig=mat->cmap.rstart;
314899cda47SBarry Smith   PetscInt       cend_orig=mat->cmap.rend,bs=mat->rmap.bs;
31557b952d6SSatish Balay 
316eada6651SSatish Balay   /* Some Variables required in the macro */
31780c1aa95SSatish Balay   Mat            A = baij->A;
31880c1aa95SSatish Balay   Mat_SeqBAIJ    *a = (Mat_SeqBAIJ*)(A)->data;
319b24ad042SBarry Smith   PetscInt       *aimax=a->imax,*ai=a->i,*ailen=a->ilen,*aj=a->j;
3203eda8832SBarry Smith   MatScalar      *aa=a->a;
321ac7a638eSSatish Balay 
322ac7a638eSSatish Balay   Mat            B = baij->B;
323ac7a638eSSatish Balay   Mat_SeqBAIJ    *b = (Mat_SeqBAIJ*)(B)->data;
324b24ad042SBarry Smith   PetscInt       *bimax=b->imax,*bi=b->i,*bilen=b->ilen,*bj=b->j;
3253eda8832SBarry Smith   MatScalar      *ba=b->a;
326ac7a638eSSatish Balay 
327b24ad042SBarry Smith   PetscInt       *rp,ii,nrow,_i,rmax,N,brow,bcol;
328b24ad042SBarry Smith   PetscInt       low,high,t,ridx,cidx,bs2=a->bs2;
3293eda8832SBarry Smith   MatScalar      *ap,*bap;
33080c1aa95SSatish Balay 
331d64ed03dSBarry Smith   PetscFunctionBegin;
33257b952d6SSatish Balay   for (i=0; i<m; i++) {
3335ef9f2a5SBarry Smith     if (im[i] < 0) continue;
3342515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
335899cda47SBarry Smith     if (im[i] >= mat->rmap.N) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],mat->rmap.N-1);
336639f9d9dSBarry Smith #endif
33757b952d6SSatish Balay     if (im[i] >= rstart_orig && im[i] < rend_orig) {
33857b952d6SSatish Balay       row = im[i] - rstart_orig;
33957b952d6SSatish Balay       for (j=0; j<n; j++) {
34057b952d6SSatish Balay         if (in[j] >= cstart_orig && in[j] < cend_orig){
34157b952d6SSatish Balay           col = in[j] - cstart_orig;
34257b952d6SSatish Balay           if (roworiented) value = v[i*n+j]; else value = v[i+j*m];
343f5e9677aSSatish Balay           MatSetValues_SeqBAIJ_A_Private(row,col,value,addv);
34480c1aa95SSatish Balay           /* ierr = MatSetValues_SeqBAIJ(baij->A,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */
34573959e64SBarry Smith         } else if (in[j] < 0) continue;
3462515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
347899cda47SBarry Smith         else if (in[j] >= mat->cmap.N) {SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",in[i],mat->cmap.N-1);}
348639f9d9dSBarry Smith #endif
34957b952d6SSatish Balay         else {
35057b952d6SSatish Balay           if (mat->was_assembled) {
351905e6a2fSBarry Smith             if (!baij->colmap) {
352905e6a2fSBarry Smith               ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
353905e6a2fSBarry Smith             }
354aa482453SBarry Smith #if defined (PETSC_USE_CTABLE)
3550f5bd95cSBarry Smith             ierr = PetscTableFind(baij->colmap,in[j]/bs + 1,&col);CHKERRQ(ierr);
356bba1ac68SSatish Balay             col  = col - 1;
35748e59246SSatish Balay #else
358bba1ac68SSatish Balay             col = baij->colmap[in[j]/bs] - 1;
35948e59246SSatish Balay #endif
36057b952d6SSatish Balay             if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) {
36157b952d6SSatish Balay               ierr = DisAssemble_MPIBAIJ(mat);CHKERRQ(ierr);
3628295de27SSatish Balay               col =  in[j];
3639bf004c3SSatish Balay               /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */
3649bf004c3SSatish Balay               B = baij->B;
3659bf004c3SSatish Balay               b = (Mat_SeqBAIJ*)(B)->data;
3669bf004c3SSatish Balay               bimax=b->imax;bi=b->i;bilen=b->ilen;bj=b->j;
3679bf004c3SSatish Balay               ba=b->a;
368bba1ac68SSatish Balay             } else col += in[j]%bs;
3698295de27SSatish Balay           } else col = in[j];
37057b952d6SSatish Balay           if (roworiented) value = v[i*n+j]; else value = v[i+j*m];
37190da58bdSSatish Balay           MatSetValues_SeqBAIJ_B_Private(row,col,value,addv);
37290da58bdSSatish Balay           /* ierr = MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */
37357b952d6SSatish Balay         }
37457b952d6SSatish Balay       }
375d64ed03dSBarry Smith     } else {
37690f02eecSBarry Smith       if (!baij->donotstash) {
377ff2fd236SBarry Smith         if (roworiented) {
3786fa18ffdSBarry Smith           ierr = MatStashValuesRow_Private(&mat->stash,im[i],n,in,v+i*n);CHKERRQ(ierr);
379ff2fd236SBarry Smith         } else {
3806fa18ffdSBarry Smith           ierr = MatStashValuesCol_Private(&mat->stash,im[i],n,in,v+i,m);CHKERRQ(ierr);
38157b952d6SSatish Balay         }
38257b952d6SSatish Balay       }
38357b952d6SSatish Balay     }
38490f02eecSBarry Smith   }
3853a40ed3dSBarry Smith   PetscFunctionReturn(0);
38657b952d6SSatish Balay }
38757b952d6SSatish Balay 
3884a2ae208SSatish Balay #undef __FUNCT__
3894a2ae208SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_MPIBAIJ_MatScalar"
390b24ad042SBarry Smith PetscErrorCode MatSetValuesBlocked_MPIBAIJ_MatScalar(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const MatScalar v[],InsertMode addv)
391ab26458aSBarry Smith {
392ab26458aSBarry Smith   Mat_MPIBAIJ     *baij = (Mat_MPIBAIJ*)mat->data;
393f15d580aSBarry Smith   const MatScalar *value;
394f15d580aSBarry Smith   MatScalar       *barray=baij->barray;
395273d9f13SBarry Smith   PetscTruth      roworiented = baij->roworiented;
396dfbe8321SBarry Smith   PetscErrorCode  ierr;
397899cda47SBarry Smith   PetscInt        i,j,ii,jj,row,col,rstart=baij->rstartbs;
398899cda47SBarry Smith   PetscInt        rend=baij->rendbs,cstart=baij->cstartbs,stepval;
399899cda47SBarry Smith   PetscInt        cend=baij->cendbs,bs=mat->rmap.bs,bs2=baij->bs2;
400ab26458aSBarry Smith 
401b16ae2b1SBarry Smith   PetscFunctionBegin;
40230793edcSSatish Balay   if(!barray) {
40382502324SSatish Balay     ierr         = PetscMalloc(bs2*sizeof(MatScalar),&barray);CHKERRQ(ierr);
40482502324SSatish Balay     baij->barray = barray;
40530793edcSSatish Balay   }
40630793edcSSatish Balay 
407ab26458aSBarry Smith   if (roworiented) {
408ab26458aSBarry Smith     stepval = (n-1)*bs;
409ab26458aSBarry Smith   } else {
410ab26458aSBarry Smith     stepval = (m-1)*bs;
411ab26458aSBarry Smith   }
412ab26458aSBarry Smith   for (i=0; i<m; i++) {
4135ef9f2a5SBarry Smith     if (im[i] < 0) continue;
4142515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
41577431f27SBarry Smith     if (im[i] >= baij->Mbs) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large, row %D max %D",im[i],baij->Mbs-1);
416ab26458aSBarry Smith #endif
417ab26458aSBarry Smith     if (im[i] >= rstart && im[i] < rend) {
418ab26458aSBarry Smith       row = im[i] - rstart;
419ab26458aSBarry Smith       for (j=0; j<n; j++) {
42015b57d14SSatish Balay         /* If NumCol = 1 then a copy is not required */
42115b57d14SSatish Balay         if ((roworiented) && (n == 1)) {
422f15d580aSBarry Smith           barray = (MatScalar*)v + i*bs2;
42315b57d14SSatish Balay         } else if((!roworiented) && (m == 1)) {
424f15d580aSBarry Smith           barray = (MatScalar*)v + j*bs2;
42515b57d14SSatish Balay         } else { /* Here a copy is required */
426ab26458aSBarry Smith           if (roworiented) {
427ab26458aSBarry Smith             value = v + i*(stepval+bs)*bs + j*bs;
428ab26458aSBarry Smith           } else {
429ab26458aSBarry Smith             value = v + j*(stepval+bs)*bs + i*bs;
430abef11f7SSatish Balay           }
43147513183SBarry Smith           for (ii=0; ii<bs; ii++,value+=stepval) {
43247513183SBarry Smith             for (jj=0; jj<bs; jj++) {
43330793edcSSatish Balay               *barray++  = *value++;
43447513183SBarry Smith             }
43547513183SBarry Smith           }
43630793edcSSatish Balay           barray -=bs2;
43715b57d14SSatish Balay         }
438abef11f7SSatish Balay 
439abef11f7SSatish Balay         if (in[j] >= cstart && in[j] < cend){
440abef11f7SSatish Balay           col  = in[j] - cstart;
44193fea6afSBarry Smith           ierr = MatSetValuesBlocked_SeqBAIJ_MatScalar(baij->A,1,&row,1,&col,barray,addv);CHKERRQ(ierr);
442ab26458aSBarry Smith         }
4435ef9f2a5SBarry Smith         else if (in[j] < 0) continue;
4442515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
44577431f27SBarry Smith         else if (in[j] >= baij->Nbs) {SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large, col %D max %D",in[j],baij->Nbs-1);}
446ab26458aSBarry Smith #endif
447ab26458aSBarry Smith         else {
448ab26458aSBarry Smith           if (mat->was_assembled) {
449ab26458aSBarry Smith             if (!baij->colmap) {
450ab26458aSBarry Smith               ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
451ab26458aSBarry Smith             }
452a5eb4965SSatish Balay 
4532515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
454aa482453SBarry Smith #if defined (PETSC_USE_CTABLE)
455b24ad042SBarry Smith             { PetscInt data;
4560f5bd95cSBarry Smith               ierr = PetscTableFind(baij->colmap,in[j]+1,&data);CHKERRQ(ierr);
45729bbc08cSBarry Smith               if ((data - 1) % bs) SETERRQ(PETSC_ERR_PLIB,"Incorrect colmap");
458fa46199cSSatish Balay             }
45948e59246SSatish Balay #else
46029bbc08cSBarry Smith             if ((baij->colmap[in[j]] - 1) % bs) SETERRQ(PETSC_ERR_PLIB,"Incorrect colmap");
461a5eb4965SSatish Balay #endif
46248e59246SSatish Balay #endif
463aa482453SBarry Smith #if defined (PETSC_USE_CTABLE)
4640f5bd95cSBarry Smith 	    ierr = PetscTableFind(baij->colmap,in[j]+1,&col);CHKERRQ(ierr);
465fa46199cSSatish Balay             col  = (col - 1)/bs;
46648e59246SSatish Balay #else
467a5eb4965SSatish Balay             col = (baij->colmap[in[j]] - 1)/bs;
46848e59246SSatish Balay #endif
469ab26458aSBarry Smith             if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) {
470ab26458aSBarry Smith               ierr = DisAssemble_MPIBAIJ(mat);CHKERRQ(ierr);
471ab26458aSBarry Smith               col =  in[j];
472ab26458aSBarry Smith             }
473ab26458aSBarry Smith           }
474ab26458aSBarry Smith           else col = in[j];
47593fea6afSBarry Smith           ierr = MatSetValuesBlocked_SeqBAIJ_MatScalar(baij->B,1,&row,1,&col,barray,addv);CHKERRQ(ierr);
476ab26458aSBarry Smith         }
477ab26458aSBarry Smith       }
478d64ed03dSBarry Smith     } else {
479ab26458aSBarry Smith       if (!baij->donotstash) {
480ff2fd236SBarry Smith         if (roworiented) {
4816fa18ffdSBarry Smith           ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
482ff2fd236SBarry Smith         } else {
4836fa18ffdSBarry Smith           ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
484ff2fd236SBarry Smith         }
485abef11f7SSatish Balay       }
486ab26458aSBarry Smith     }
487ab26458aSBarry Smith   }
4883a40ed3dSBarry Smith   PetscFunctionReturn(0);
489ab26458aSBarry Smith }
4906fa18ffdSBarry Smith 
4910bdbc534SSatish Balay #define HASH_KEY 0.6180339887
492b24ad042SBarry Smith #define HASH(size,key,tmp) (tmp = (key)*HASH_KEY,(PetscInt)((size)*(tmp-(PetscInt)tmp)))
493b24ad042SBarry Smith /* #define HASH(size,key) ((PetscInt)((size)*fmod(((key)*HASH_KEY),1))) */
494b24ad042SBarry Smith /* #define HASH(size,key,tmp) ((PetscInt)((size)*fmod(((key)*HASH_KEY),1))) */
4954a2ae208SSatish Balay #undef __FUNCT__
4964a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_MPIBAIJ_HT_MatScalar"
497b24ad042SBarry Smith PetscErrorCode MatSetValues_MPIBAIJ_HT_MatScalar(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const MatScalar v[],InsertMode addv)
4980bdbc534SSatish Balay {
4990bdbc534SSatish Balay   Mat_MPIBAIJ    *baij = (Mat_MPIBAIJ*)mat->data;
500273d9f13SBarry Smith   PetscTruth     roworiented = baij->roworiented;
501dfbe8321SBarry Smith   PetscErrorCode ierr;
502b24ad042SBarry Smith   PetscInt       i,j,row,col;
503899cda47SBarry Smith   PetscInt       rstart_orig=mat->rmap.rstart;
504899cda47SBarry Smith   PetscInt       rend_orig=mat->rmap.rend,Nbs=baij->Nbs;
505899cda47SBarry Smith   PetscInt       h1,key,size=baij->ht_size,bs=mat->rmap.bs,*HT=baij->ht,idx;
506329f5518SBarry Smith   PetscReal      tmp;
5073eda8832SBarry Smith   MatScalar      **HD = baij->hd,value;
5082515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
509b24ad042SBarry Smith   PetscInt       total_ct=baij->ht_total_ct,insert_ct=baij->ht_insert_ct;
5104a15367fSSatish Balay #endif
5110bdbc534SSatish Balay 
5120bdbc534SSatish Balay   PetscFunctionBegin;
5130bdbc534SSatish Balay 
5140bdbc534SSatish Balay   for (i=0; i<m; i++) {
5152515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
51629bbc08cSBarry Smith     if (im[i] < 0) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Negative row");
517899cda47SBarry Smith     if (im[i] >= mat->rmap.N) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],mat->rmap.N-1);
5180bdbc534SSatish Balay #endif
5190bdbc534SSatish Balay       row = im[i];
520c2760754SSatish Balay     if (row >= rstart_orig && row < rend_orig) {
5210bdbc534SSatish Balay       for (j=0; j<n; j++) {
5220bdbc534SSatish Balay         col = in[j];
5236fa18ffdSBarry Smith         if (roworiented) value = v[i*n+j]; else value = v[i+j*m];
524b24ad042SBarry Smith         /* Look up PetscInto the Hash Table */
525c2760754SSatish Balay         key = (row/bs)*Nbs+(col/bs)+1;
526c2760754SSatish Balay         h1  = HASH(size,key,tmp);
5270bdbc534SSatish Balay 
528c2760754SSatish Balay 
529c2760754SSatish Balay         idx = h1;
5302515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
531187ce0cbSSatish Balay         insert_ct++;
532187ce0cbSSatish Balay         total_ct++;
533187ce0cbSSatish Balay         if (HT[idx] != key) {
534187ce0cbSSatish Balay           for (idx=h1; (idx<size) && (HT[idx]!=key); idx++,total_ct++);
535187ce0cbSSatish Balay           if (idx == size) {
536187ce0cbSSatish Balay             for (idx=0; (idx<h1) && (HT[idx]!=key); idx++,total_ct++);
537187ce0cbSSatish Balay             if (idx == h1) {
53877431f27SBarry Smith               SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"(%D,%D) has no entry in the hash table", row, col);
539187ce0cbSSatish Balay             }
540187ce0cbSSatish Balay           }
541187ce0cbSSatish Balay         }
542187ce0cbSSatish Balay #else
543c2760754SSatish Balay         if (HT[idx] != key) {
544c2760754SSatish Balay           for (idx=h1; (idx<size) && (HT[idx]!=key); idx++);
545c2760754SSatish Balay           if (idx == size) {
546c2760754SSatish Balay             for (idx=0; (idx<h1) && (HT[idx]!=key); idx++);
547c2760754SSatish Balay             if (idx == h1) {
54877431f27SBarry Smith               SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"(%D,%D) has no entry in the hash table", row, col);
549c2760754SSatish Balay             }
550c2760754SSatish Balay           }
551c2760754SSatish Balay         }
552187ce0cbSSatish Balay #endif
553c2760754SSatish Balay         /* A HASH table entry is found, so insert the values at the correct address */
554c2760754SSatish Balay         if (addv == ADD_VALUES) *(HD[idx]+ (col % bs)*bs + (row % bs)) += value;
555c2760754SSatish Balay         else                    *(HD[idx]+ (col % bs)*bs + (row % bs))  = value;
5560bdbc534SSatish Balay       }
5570bdbc534SSatish Balay     } else {
5580bdbc534SSatish Balay       if (!baij->donotstash) {
559ff2fd236SBarry Smith         if (roworiented) {
5608798bf22SSatish Balay           ierr = MatStashValuesRow_Private(&mat->stash,im[i],n,in,v+i*n);CHKERRQ(ierr);
561ff2fd236SBarry Smith         } else {
5628798bf22SSatish Balay           ierr = MatStashValuesCol_Private(&mat->stash,im[i],n,in,v+i,m);CHKERRQ(ierr);
5630bdbc534SSatish Balay         }
5640bdbc534SSatish Balay       }
5650bdbc534SSatish Balay     }
5660bdbc534SSatish Balay   }
5672515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
568187ce0cbSSatish Balay   baij->ht_total_ct = total_ct;
569187ce0cbSSatish Balay   baij->ht_insert_ct = insert_ct;
570187ce0cbSSatish Balay #endif
5710bdbc534SSatish Balay   PetscFunctionReturn(0);
5720bdbc534SSatish Balay }
5730bdbc534SSatish Balay 
5744a2ae208SSatish Balay #undef __FUNCT__
5754a2ae208SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_MPIBAIJ_HT_MatScalar"
576b24ad042SBarry Smith PetscErrorCode MatSetValuesBlocked_MPIBAIJ_HT_MatScalar(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const MatScalar v[],InsertMode addv)
5770bdbc534SSatish Balay {
5780bdbc534SSatish Balay   Mat_MPIBAIJ     *baij = (Mat_MPIBAIJ*)mat->data;
579273d9f13SBarry Smith   PetscTruth      roworiented = baij->roworiented;
580dfbe8321SBarry Smith   PetscErrorCode  ierr;
581b24ad042SBarry Smith   PetscInt        i,j,ii,jj,row,col;
582899cda47SBarry Smith   PetscInt        rstart=baij->rstartbs;
583899cda47SBarry Smith   PetscInt        rend=mat->rmap.rend,stepval,bs=mat->rmap.bs,bs2=baij->bs2;
584b24ad042SBarry Smith   PetscInt        h1,key,size=baij->ht_size,idx,*HT=baij->ht,Nbs=baij->Nbs;
585329f5518SBarry Smith   PetscReal       tmp;
5863eda8832SBarry Smith   MatScalar       **HD = baij->hd,*baij_a;
587f15d580aSBarry Smith   const MatScalar *v_t,*value;
5882515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
589b24ad042SBarry Smith   PetscInt        total_ct=baij->ht_total_ct,insert_ct=baij->ht_insert_ct;
5904a15367fSSatish Balay #endif
5910bdbc534SSatish Balay 
592d0a41580SSatish Balay   PetscFunctionBegin;
593d0a41580SSatish Balay 
5940bdbc534SSatish Balay   if (roworiented) {
5950bdbc534SSatish Balay     stepval = (n-1)*bs;
5960bdbc534SSatish Balay   } else {
5970bdbc534SSatish Balay     stepval = (m-1)*bs;
5980bdbc534SSatish Balay   }
5990bdbc534SSatish Balay   for (i=0; i<m; i++) {
6002515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
60177431f27SBarry Smith     if (im[i] < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %D",im[i]);
60277431f27SBarry Smith     if (im[i] >= baij->Mbs) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],baij->Mbs-1);
6030bdbc534SSatish Balay #endif
6040bdbc534SSatish Balay     row   = im[i];
605187ce0cbSSatish Balay     v_t   = v + i*bs2;
606c2760754SSatish Balay     if (row >= rstart && row < rend) {
6070bdbc534SSatish Balay       for (j=0; j<n; j++) {
6080bdbc534SSatish Balay         col = in[j];
6090bdbc534SSatish Balay 
6100bdbc534SSatish Balay         /* Look up into the Hash Table */
611c2760754SSatish Balay         key = row*Nbs+col+1;
612c2760754SSatish Balay         h1  = HASH(size,key,tmp);
6130bdbc534SSatish Balay 
614c2760754SSatish Balay         idx = h1;
6152515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
616187ce0cbSSatish Balay         total_ct++;
617187ce0cbSSatish Balay         insert_ct++;
618187ce0cbSSatish Balay        if (HT[idx] != key) {
619187ce0cbSSatish Balay           for (idx=h1; (idx<size) && (HT[idx]!=key); idx++,total_ct++);
620187ce0cbSSatish Balay           if (idx == size) {
621187ce0cbSSatish Balay             for (idx=0; (idx<h1) && (HT[idx]!=key); idx++,total_ct++);
622187ce0cbSSatish Balay             if (idx == h1) {
62377431f27SBarry Smith               SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"(%D,%D) has no entry in the hash table", row, col);
624187ce0cbSSatish Balay             }
625187ce0cbSSatish Balay           }
626187ce0cbSSatish Balay         }
627187ce0cbSSatish Balay #else
628c2760754SSatish Balay         if (HT[idx] != key) {
629c2760754SSatish Balay           for (idx=h1; (idx<size) && (HT[idx]!=key); idx++);
630c2760754SSatish Balay           if (idx == size) {
631c2760754SSatish Balay             for (idx=0; (idx<h1) && (HT[idx]!=key); idx++);
632c2760754SSatish Balay             if (idx == h1) {
63377431f27SBarry Smith               SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"(%D,%D) has no entry in the hash table", row, col);
634c2760754SSatish Balay             }
635c2760754SSatish Balay           }
636c2760754SSatish Balay         }
637187ce0cbSSatish Balay #endif
638c2760754SSatish Balay         baij_a = HD[idx];
6390bdbc534SSatish Balay         if (roworiented) {
640c2760754SSatish Balay           /*value = v + i*(stepval+bs)*bs + j*bs;*/
641187ce0cbSSatish Balay           /* value = v + (i*(stepval+bs)+j)*bs; */
642187ce0cbSSatish Balay           value = v_t;
643187ce0cbSSatish Balay           v_t  += bs;
644fef45726SSatish Balay           if (addv == ADD_VALUES) {
645c2760754SSatish Balay             for (ii=0; ii<bs; ii++,value+=stepval) {
646c2760754SSatish Balay               for (jj=ii; jj<bs2; jj+=bs) {
647fef45726SSatish Balay                 baij_a[jj]  += *value++;
648b4cc0f5aSSatish Balay               }
649b4cc0f5aSSatish Balay             }
650fef45726SSatish Balay           } else {
651c2760754SSatish Balay             for (ii=0; ii<bs; ii++,value+=stepval) {
652c2760754SSatish Balay               for (jj=ii; jj<bs2; jj+=bs) {
653fef45726SSatish Balay                 baij_a[jj]  = *value++;
654fef45726SSatish Balay               }
655fef45726SSatish Balay             }
656fef45726SSatish Balay           }
6570bdbc534SSatish Balay         } else {
6580bdbc534SSatish Balay           value = v + j*(stepval+bs)*bs + i*bs;
659fef45726SSatish Balay           if (addv == ADD_VALUES) {
660b4cc0f5aSSatish Balay             for (ii=0; ii<bs; ii++,value+=stepval,baij_a+=bs) {
6610bdbc534SSatish Balay               for (jj=0; jj<bs; jj++) {
662fef45726SSatish Balay                 baij_a[jj]  += *value++;
663fef45726SSatish Balay               }
664fef45726SSatish Balay             }
665fef45726SSatish Balay           } else {
666fef45726SSatish Balay             for (ii=0; ii<bs; ii++,value+=stepval,baij_a+=bs) {
667fef45726SSatish Balay               for (jj=0; jj<bs; jj++) {
668fef45726SSatish Balay                 baij_a[jj]  = *value++;
669fef45726SSatish Balay               }
670b4cc0f5aSSatish Balay             }
6710bdbc534SSatish Balay           }
6720bdbc534SSatish Balay         }
6730bdbc534SSatish Balay       }
6740bdbc534SSatish Balay     } else {
6750bdbc534SSatish Balay       if (!baij->donotstash) {
6760bdbc534SSatish Balay         if (roworiented) {
6778798bf22SSatish Balay           ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
6780bdbc534SSatish Balay         } else {
6798798bf22SSatish Balay           ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
6800bdbc534SSatish Balay         }
6810bdbc534SSatish Balay       }
6820bdbc534SSatish Balay     }
6830bdbc534SSatish Balay   }
6842515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
685187ce0cbSSatish Balay   baij->ht_total_ct = total_ct;
686187ce0cbSSatish Balay   baij->ht_insert_ct = insert_ct;
687187ce0cbSSatish Balay #endif
6880bdbc534SSatish Balay   PetscFunctionReturn(0);
6890bdbc534SSatish Balay }
690133cdb44SSatish Balay 
6914a2ae208SSatish Balay #undef __FUNCT__
6924a2ae208SSatish Balay #define __FUNCT__ "MatGetValues_MPIBAIJ"
693b24ad042SBarry Smith PetscErrorCode MatGetValues_MPIBAIJ(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[])
694d6de1c52SSatish Balay {
695d6de1c52SSatish Balay   Mat_MPIBAIJ    *baij = (Mat_MPIBAIJ*)mat->data;
6966849ba73SBarry Smith   PetscErrorCode ierr;
697899cda47SBarry Smith   PetscInt       bs=mat->rmap.bs,i,j,bsrstart = mat->rmap.rstart,bsrend = mat->rmap.rend;
698899cda47SBarry Smith   PetscInt       bscstart = mat->cmap.rstart,bscend = mat->cmap.rend,row,col,data;
699d6de1c52SSatish Balay 
700133cdb44SSatish Balay   PetscFunctionBegin;
701d6de1c52SSatish Balay   for (i=0; i<m; i++) {
70277431f27SBarry Smith     if (idxm[i] < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %D",idxm[i]);
703899cda47SBarry Smith     if (idxm[i] >= mat->rmap.N) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",idxm[i],mat->rmap.N-1);
704d6de1c52SSatish Balay     if (idxm[i] >= bsrstart && idxm[i] < bsrend) {
705d6de1c52SSatish Balay       row = idxm[i] - bsrstart;
706d6de1c52SSatish Balay       for (j=0; j<n; j++) {
70777431f27SBarry Smith         if (idxn[j] < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Negative column: %D",idxn[j]);
708899cda47SBarry Smith         if (idxn[j] >= mat->cmap.N) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",idxn[j],mat->cmap.N-1);
709d6de1c52SSatish Balay         if (idxn[j] >= bscstart && idxn[j] < bscend){
710d6de1c52SSatish Balay           col = idxn[j] - bscstart;
71198dd23e9SBarry Smith           ierr = MatGetValues_SeqBAIJ(baij->A,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr);
712d64ed03dSBarry Smith         } else {
713905e6a2fSBarry Smith           if (!baij->colmap) {
714905e6a2fSBarry Smith             ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
715905e6a2fSBarry Smith           }
716aa482453SBarry Smith #if defined (PETSC_USE_CTABLE)
7170f5bd95cSBarry Smith           ierr = PetscTableFind(baij->colmap,idxn[j]/bs+1,&data);CHKERRQ(ierr);
718fa46199cSSatish Balay           data --;
71948e59246SSatish Balay #else
72048e59246SSatish Balay           data = baij->colmap[idxn[j]/bs]-1;
72148e59246SSatish Balay #endif
72248e59246SSatish Balay           if((data < 0) || (baij->garray[data/bs] != idxn[j]/bs)) *(v+i*n+j) = 0.0;
723d9d09a02SSatish Balay           else {
72448e59246SSatish Balay             col  = data + idxn[j]%bs;
72598dd23e9SBarry Smith             ierr = MatGetValues_SeqBAIJ(baij->B,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr);
726d6de1c52SSatish Balay           }
727d6de1c52SSatish Balay         }
728d6de1c52SSatish Balay       }
729d64ed03dSBarry Smith     } else {
73029bbc08cSBarry Smith       SETERRQ(PETSC_ERR_SUP,"Only local values currently supported");
731d6de1c52SSatish Balay     }
732d6de1c52SSatish Balay   }
7333a40ed3dSBarry Smith  PetscFunctionReturn(0);
734d6de1c52SSatish Balay }
735d6de1c52SSatish Balay 
7364a2ae208SSatish Balay #undef __FUNCT__
7374a2ae208SSatish Balay #define __FUNCT__ "MatNorm_MPIBAIJ"
738dfbe8321SBarry Smith PetscErrorCode MatNorm_MPIBAIJ(Mat mat,NormType type,PetscReal *nrm)
739d6de1c52SSatish Balay {
740d6de1c52SSatish Balay   Mat_MPIBAIJ    *baij = (Mat_MPIBAIJ*)mat->data;
741d6de1c52SSatish Balay   Mat_SeqBAIJ    *amat = (Mat_SeqBAIJ*)baij->A->data,*bmat = (Mat_SeqBAIJ*)baij->B->data;
742dfbe8321SBarry Smith   PetscErrorCode ierr;
743899cda47SBarry Smith   PetscInt       i,j,bs2=baij->bs2,bs=baij->A->rmap.bs,nz,row,col;
744329f5518SBarry Smith   PetscReal      sum = 0.0;
7453eda8832SBarry Smith   MatScalar      *v;
746d6de1c52SSatish Balay 
747d64ed03dSBarry Smith   PetscFunctionBegin;
748d6de1c52SSatish Balay   if (baij->size == 1) {
749064f8208SBarry Smith     ierr =  MatNorm(baij->A,type,nrm);CHKERRQ(ierr);
750d6de1c52SSatish Balay   } else {
751d6de1c52SSatish Balay     if (type == NORM_FROBENIUS) {
752d6de1c52SSatish Balay       v = amat->a;
7538a62d963SHong Zhang       nz = amat->nz*bs2;
7548a62d963SHong Zhang       for (i=0; i<nz; i++) {
755aa482453SBarry Smith #if defined(PETSC_USE_COMPLEX)
756329f5518SBarry Smith         sum += PetscRealPart(PetscConj(*v)*(*v)); v++;
757d6de1c52SSatish Balay #else
758d6de1c52SSatish Balay         sum += (*v)*(*v); v++;
759d6de1c52SSatish Balay #endif
760d6de1c52SSatish Balay       }
761d6de1c52SSatish Balay       v = bmat->a;
7628a62d963SHong Zhang       nz = bmat->nz*bs2;
7638a62d963SHong Zhang       for (i=0; i<nz; i++) {
764aa482453SBarry Smith #if defined(PETSC_USE_COMPLEX)
765329f5518SBarry Smith         sum += PetscRealPart(PetscConj(*v)*(*v)); v++;
766d6de1c52SSatish Balay #else
767d6de1c52SSatish Balay         sum += (*v)*(*v); v++;
768d6de1c52SSatish Balay #endif
769d6de1c52SSatish Balay       }
770064f8208SBarry Smith       ierr = MPI_Allreduce(&sum,nrm,1,MPIU_REAL,MPI_SUM,mat->comm);CHKERRQ(ierr);
771064f8208SBarry Smith       *nrm = sqrt(*nrm);
7728a62d963SHong Zhang     } else if (type == NORM_1) { /* max column sum */
7738a62d963SHong Zhang       PetscReal *tmp,*tmp2;
774899cda47SBarry Smith       PetscInt  *jj,*garray=baij->garray,cstart=baij->rstartbs;
775899cda47SBarry Smith       ierr = PetscMalloc((2*mat->cmap.N+1)*sizeof(PetscReal),&tmp);CHKERRQ(ierr);
776899cda47SBarry Smith       tmp2 = tmp + mat->cmap.N;
777899cda47SBarry Smith       ierr = PetscMemzero(tmp,mat->cmap.N*sizeof(PetscReal));CHKERRQ(ierr);
7788a62d963SHong Zhang       v = amat->a; jj = amat->j;
7798a62d963SHong Zhang       for (i=0; i<amat->nz; i++) {
7808a62d963SHong Zhang         for (j=0; j<bs; j++){
7818a62d963SHong Zhang           col = bs*(cstart + *jj) + j; /* column index */
7828a62d963SHong Zhang           for (row=0; row<bs; row++){
7838a62d963SHong Zhang             tmp[col] += PetscAbsScalar(*v);  v++;
7848a62d963SHong Zhang           }
7858a62d963SHong Zhang         }
7868a62d963SHong Zhang         jj++;
7878a62d963SHong Zhang       }
7888a62d963SHong Zhang       v = bmat->a; jj = bmat->j;
7898a62d963SHong Zhang       for (i=0; i<bmat->nz; i++) {
7908a62d963SHong Zhang         for (j=0; j<bs; j++){
7918a62d963SHong Zhang           col = bs*garray[*jj] + j;
7928a62d963SHong Zhang           for (row=0; row<bs; row++){
7938a62d963SHong Zhang             tmp[col] += PetscAbsScalar(*v); v++;
7948a62d963SHong Zhang           }
7958a62d963SHong Zhang         }
7968a62d963SHong Zhang         jj++;
7978a62d963SHong Zhang       }
798899cda47SBarry Smith       ierr = MPI_Allreduce(tmp,tmp2,mat->cmap.N,MPIU_REAL,MPI_SUM,mat->comm);CHKERRQ(ierr);
7998a62d963SHong Zhang       *nrm = 0.0;
800899cda47SBarry Smith       for (j=0; j<mat->cmap.N; j++) {
8018a62d963SHong Zhang         if (tmp2[j] > *nrm) *nrm = tmp2[j];
8028a62d963SHong Zhang       }
8038a62d963SHong Zhang       ierr = PetscFree(tmp);CHKERRQ(ierr);
8048a62d963SHong Zhang     } else if (type == NORM_INFINITY) { /* max row sum */
805577dd1f9SKris Buschelman       PetscReal *sums;
806577dd1f9SKris Buschelman       ierr = PetscMalloc(bs*sizeof(PetscReal),&sums);CHKERRQ(ierr)
8078a62d963SHong Zhang       sum = 0.0;
8088a62d963SHong Zhang       for (j=0; j<amat->mbs; j++) {
8098a62d963SHong Zhang         for (row=0; row<bs; row++) sums[row] = 0.0;
8108a62d963SHong Zhang         v = amat->a + bs2*amat->i[j];
8118a62d963SHong Zhang         nz = amat->i[j+1]-amat->i[j];
8128a62d963SHong Zhang         for (i=0; i<nz; i++) {
8138a62d963SHong Zhang           for (col=0; col<bs; col++){
8148a62d963SHong Zhang             for (row=0; row<bs; row++){
8158a62d963SHong Zhang               sums[row] += PetscAbsScalar(*v); v++;
8168a62d963SHong Zhang             }
8178a62d963SHong Zhang           }
8188a62d963SHong Zhang         }
8198a62d963SHong Zhang         v = bmat->a + bs2*bmat->i[j];
8208a62d963SHong Zhang         nz = bmat->i[j+1]-bmat->i[j];
8218a62d963SHong Zhang         for (i=0; i<nz; i++) {
8228a62d963SHong Zhang           for (col=0; col<bs; col++){
8238a62d963SHong Zhang             for (row=0; row<bs; row++){
8248a62d963SHong Zhang               sums[row] += PetscAbsScalar(*v); v++;
8258a62d963SHong Zhang             }
8268a62d963SHong Zhang           }
8278a62d963SHong Zhang         }
8288a62d963SHong Zhang         for (row=0; row<bs; row++){
8298a62d963SHong Zhang           if (sums[row] > sum) sum = sums[row];
8308a62d963SHong Zhang         }
8318a62d963SHong Zhang       }
8328a62d963SHong Zhang       ierr = MPI_Allreduce(&sum,nrm,1,MPIU_REAL,MPI_MAX,mat->comm);CHKERRQ(ierr);
833577dd1f9SKris Buschelman       ierr = PetscFree(sums);CHKERRQ(ierr);
834d64ed03dSBarry Smith     } else {
83529bbc08cSBarry Smith       SETERRQ(PETSC_ERR_SUP,"No support for this norm yet");
836d6de1c52SSatish Balay     }
837d64ed03dSBarry Smith   }
8383a40ed3dSBarry Smith   PetscFunctionReturn(0);
839d6de1c52SSatish Balay }
84057b952d6SSatish Balay 
841fef45726SSatish Balay /*
842fef45726SSatish Balay   Creates the hash table, and sets the table
843fef45726SSatish Balay   This table is created only once.
844fef45726SSatish Balay   If new entried need to be added to the matrix
845fef45726SSatish Balay   then the hash table has to be destroyed and
846fef45726SSatish Balay   recreated.
847fef45726SSatish Balay */
8484a2ae208SSatish Balay #undef __FUNCT__
8494a2ae208SSatish Balay #define __FUNCT__ "MatCreateHashTable_MPIBAIJ_Private"
850dfbe8321SBarry Smith PetscErrorCode MatCreateHashTable_MPIBAIJ_Private(Mat mat,PetscReal factor)
851596b8d2eSBarry Smith {
852596b8d2eSBarry Smith   Mat_MPIBAIJ    *baij = (Mat_MPIBAIJ*)mat->data;
853596b8d2eSBarry Smith   Mat            A = baij->A,B=baij->B;
854596b8d2eSBarry Smith   Mat_SeqBAIJ    *a=(Mat_SeqBAIJ *)A->data,*b=(Mat_SeqBAIJ *)B->data;
855b24ad042SBarry Smith   PetscInt       i,j,k,nz=a->nz+b->nz,h1,*ai=a->i,*aj=a->j,*bi=b->i,*bj=b->j;
8566849ba73SBarry Smith   PetscErrorCode ierr;
857899cda47SBarry Smith   PetscInt       size,bs2=baij->bs2,rstart=baij->rstartbs;
858899cda47SBarry Smith   PetscInt       cstart=baij->cstartbs,*garray=baij->garray,row,col,Nbs=baij->Nbs;
859b24ad042SBarry Smith   PetscInt       *HT,key;
8603eda8832SBarry Smith   MatScalar      **HD;
861329f5518SBarry Smith   PetscReal      tmp;
8626cf91177SBarry Smith #if defined(PETSC_USE_INFO)
863b24ad042SBarry Smith   PetscInt       ct=0,max=0;
8644a15367fSSatish Balay #endif
865fef45726SSatish Balay 
866d64ed03dSBarry Smith   PetscFunctionBegin;
867b24ad042SBarry Smith   baij->ht_size=(PetscInt)(factor*nz);
8680bdbc534SSatish Balay   size = baij->ht_size;
869fef45726SSatish Balay 
8700bdbc534SSatish Balay   if (baij->ht) {
8710bdbc534SSatish Balay     PetscFunctionReturn(0);
872596b8d2eSBarry Smith   }
8730bdbc534SSatish Balay 
874fef45726SSatish Balay   /* Allocate Memory for Hash Table */
875b24ad042SBarry Smith   ierr     = PetscMalloc((size)*(sizeof(PetscInt)+sizeof(MatScalar*))+1,&baij->hd);CHKERRQ(ierr);
876b24ad042SBarry Smith   baij->ht = (PetscInt*)(baij->hd + size);
877b9e4cc15SSatish Balay   HD       = baij->hd;
878a07cd24cSSatish Balay   HT       = baij->ht;
879b9e4cc15SSatish Balay 
880b9e4cc15SSatish Balay 
881b24ad042SBarry Smith   ierr = PetscMemzero(HD,size*(sizeof(PetscInt)+sizeof(PetscScalar*)));CHKERRQ(ierr);
8820bdbc534SSatish Balay 
883596b8d2eSBarry Smith 
884596b8d2eSBarry Smith   /* Loop Over A */
8850bdbc534SSatish Balay   for (i=0; i<a->mbs; i++) {
886596b8d2eSBarry Smith     for (j=ai[i]; j<ai[i+1]; j++) {
8870bdbc534SSatish Balay       row = i+rstart;
8880bdbc534SSatish Balay       col = aj[j]+cstart;
889596b8d2eSBarry Smith 
890187ce0cbSSatish Balay       key = row*Nbs + col + 1;
891c2760754SSatish Balay       h1  = HASH(size,key,tmp);
8920bdbc534SSatish Balay       for (k=0; k<size; k++){
893958c9bccSBarry Smith         if (!HT[(h1+k)%size]) {
8940bdbc534SSatish Balay           HT[(h1+k)%size] = key;
8950bdbc534SSatish Balay           HD[(h1+k)%size] = a->a + j*bs2;
896596b8d2eSBarry Smith           break;
8976cf91177SBarry Smith #if defined(PETSC_USE_INFO)
898187ce0cbSSatish Balay         } else {
899187ce0cbSSatish Balay           ct++;
900187ce0cbSSatish Balay #endif
901596b8d2eSBarry Smith         }
902187ce0cbSSatish Balay       }
9036cf91177SBarry Smith #if defined(PETSC_USE_INFO)
904187ce0cbSSatish Balay       if (k> max) max = k;
905187ce0cbSSatish Balay #endif
906596b8d2eSBarry Smith     }
907596b8d2eSBarry Smith   }
908596b8d2eSBarry Smith   /* Loop Over B */
9090bdbc534SSatish Balay   for (i=0; i<b->mbs; i++) {
910596b8d2eSBarry Smith     for (j=bi[i]; j<bi[i+1]; j++) {
9110bdbc534SSatish Balay       row = i+rstart;
9120bdbc534SSatish Balay       col = garray[bj[j]];
913187ce0cbSSatish Balay       key = row*Nbs + col + 1;
914c2760754SSatish Balay       h1  = HASH(size,key,tmp);
9150bdbc534SSatish Balay       for (k=0; k<size; k++){
916958c9bccSBarry Smith         if (!HT[(h1+k)%size]) {
9170bdbc534SSatish Balay           HT[(h1+k)%size] = key;
9180bdbc534SSatish Balay           HD[(h1+k)%size] = b->a + j*bs2;
919596b8d2eSBarry Smith           break;
9206cf91177SBarry Smith #if defined(PETSC_USE_INFO)
921187ce0cbSSatish Balay         } else {
922187ce0cbSSatish Balay           ct++;
923187ce0cbSSatish Balay #endif
924596b8d2eSBarry Smith         }
925187ce0cbSSatish Balay       }
9266cf91177SBarry Smith #if defined(PETSC_USE_INFO)
927187ce0cbSSatish Balay       if (k> max) max = k;
928187ce0cbSSatish Balay #endif
929596b8d2eSBarry Smith     }
930596b8d2eSBarry Smith   }
931596b8d2eSBarry Smith 
932596b8d2eSBarry Smith   /* Print Summary */
9336cf91177SBarry Smith #if defined(PETSC_USE_INFO)
934c38d4ed2SBarry Smith   for (i=0,j=0; i<size; i++) {
935596b8d2eSBarry Smith     if (HT[i]) {j++;}
936c38d4ed2SBarry Smith   }
937ae15b995SBarry Smith   ierr = PetscInfo2(0,"Average Search = %5.2f,max search = %D\n",(!j)? 0.0:((PetscReal)(ct+j))/j,max);CHKERRQ(ierr);
938187ce0cbSSatish Balay #endif
9393a40ed3dSBarry Smith   PetscFunctionReturn(0);
940596b8d2eSBarry Smith }
94157b952d6SSatish Balay 
9424a2ae208SSatish Balay #undef __FUNCT__
9434a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyBegin_MPIBAIJ"
944dfbe8321SBarry Smith PetscErrorCode MatAssemblyBegin_MPIBAIJ(Mat mat,MatAssemblyType mode)
945bbb85fb3SSatish Balay {
946bbb85fb3SSatish Balay   Mat_MPIBAIJ    *baij = (Mat_MPIBAIJ*)mat->data;
947dfbe8321SBarry Smith   PetscErrorCode ierr;
948b24ad042SBarry Smith   PetscInt       nstash,reallocs;
949bbb85fb3SSatish Balay   InsertMode     addv;
950bbb85fb3SSatish Balay 
951bbb85fb3SSatish Balay   PetscFunctionBegin;
952bbb85fb3SSatish Balay   if (baij->donotstash) {
953bbb85fb3SSatish Balay     PetscFunctionReturn(0);
954bbb85fb3SSatish Balay   }
955bbb85fb3SSatish Balay 
956bbb85fb3SSatish Balay   /* make sure all processors are either in INSERTMODE or ADDMODE */
957bbb85fb3SSatish Balay   ierr = MPI_Allreduce(&mat->insertmode,&addv,1,MPI_INT,MPI_BOR,mat->comm);CHKERRQ(ierr);
958bbb85fb3SSatish Balay   if (addv == (ADD_VALUES|INSERT_VALUES)) {
95929bbc08cSBarry Smith     SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Some processors inserted others added");
960bbb85fb3SSatish Balay   }
961bbb85fb3SSatish Balay   mat->insertmode = addv; /* in case this processor had no cache */
962bbb85fb3SSatish Balay 
963899cda47SBarry Smith   ierr = MatStashScatterBegin_Private(&mat->stash,mat->rmap.range);CHKERRQ(ierr);
964899cda47SBarry Smith   ierr = MatStashScatterBegin_Private(&mat->bstash,baij->rangebs);CHKERRQ(ierr);
9658798bf22SSatish Balay   ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr);
966ae15b995SBarry Smith   ierr = PetscInfo2(0,"Stash has %D entries,uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr);
96746680499SSatish Balay   ierr = MatStashGetInfo_Private(&mat->bstash,&nstash,&reallocs);CHKERRQ(ierr);
968ae15b995SBarry Smith   ierr = PetscInfo2(0,"Block-Stash has %D entries, uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr);
969bbb85fb3SSatish Balay   PetscFunctionReturn(0);
970bbb85fb3SSatish Balay }
971bbb85fb3SSatish Balay 
9724a2ae208SSatish Balay #undef __FUNCT__
9734a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyEnd_MPIBAIJ"
974dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_MPIBAIJ(Mat mat,MatAssemblyType mode)
975bbb85fb3SSatish Balay {
976bbb85fb3SSatish Balay   Mat_MPIBAIJ    *baij=(Mat_MPIBAIJ*)mat->data;
97791c97fd4SSatish Balay   Mat_SeqBAIJ    *a=(Mat_SeqBAIJ*)baij->A->data;
9786849ba73SBarry Smith   PetscErrorCode ierr;
979b24ad042SBarry Smith   PetscInt       i,j,rstart,ncols,flg,bs2=baij->bs2;
980b24ad042SBarry Smith   PetscInt       *row,*col,other_disassembled;
9817c922b88SBarry Smith   PetscTruth     r1,r2,r3;
9823eda8832SBarry Smith   MatScalar      *val;
983bbb85fb3SSatish Balay   InsertMode     addv = mat->insertmode;
984b24ad042SBarry Smith   PetscMPIInt    n;
985bbb85fb3SSatish Balay 
98691c97fd4SSatish Balay   /* do not use 'b=(Mat_SeqBAIJ*)baij->B->data' as B can be reset in disassembly */
987bbb85fb3SSatish Balay   PetscFunctionBegin;
988bbb85fb3SSatish Balay   if (!baij->donotstash) {
989a2d1c673SSatish Balay     while (1) {
9908798bf22SSatish Balay       ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr);
991a2d1c673SSatish Balay       if (!flg) break;
992a2d1c673SSatish Balay 
993bbb85fb3SSatish Balay       for (i=0; i<n;) {
994bbb85fb3SSatish Balay         /* Now identify the consecutive vals belonging to the same row */
995bbb85fb3SSatish Balay         for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; }
996bbb85fb3SSatish Balay         if (j < n) ncols = j-i;
997bbb85fb3SSatish Balay         else       ncols = n-i;
998bbb85fb3SSatish Balay         /* Now assemble all these values with a single function call */
99993fea6afSBarry Smith         ierr = MatSetValues_MPIBAIJ_MatScalar(mat,1,row+i,ncols,col+i,val+i,addv);CHKERRQ(ierr);
1000bbb85fb3SSatish Balay         i = j;
1001bbb85fb3SSatish Balay       }
1002bbb85fb3SSatish Balay     }
10038798bf22SSatish Balay     ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr);
1004a2d1c673SSatish Balay     /* Now process the block-stash. Since the values are stashed column-oriented,
1005a2d1c673SSatish Balay        set the roworiented flag to column oriented, and after MatSetValues()
1006a2d1c673SSatish Balay        restore the original flags */
1007a2d1c673SSatish Balay     r1 = baij->roworiented;
1008a2d1c673SSatish Balay     r2 = a->roworiented;
100991c97fd4SSatish Balay     r3 = ((Mat_SeqBAIJ*)baij->B->data)->roworiented;
10107c922b88SBarry Smith     baij->roworiented = PETSC_FALSE;
10117c922b88SBarry Smith     a->roworiented    = PETSC_FALSE;
101291c97fd4SSatish Balay     (((Mat_SeqBAIJ*)baij->B->data))->roworiented    = PETSC_FALSE; /* b->roworiented */
1013a2d1c673SSatish Balay     while (1) {
10148798bf22SSatish Balay       ierr = MatStashScatterGetMesg_Private(&mat->bstash,&n,&row,&col,&val,&flg);CHKERRQ(ierr);
1015a2d1c673SSatish Balay       if (!flg) break;
1016a2d1c673SSatish Balay 
1017a2d1c673SSatish Balay       for (i=0; i<n;) {
1018a2d1c673SSatish Balay         /* Now identify the consecutive vals belonging to the same row */
1019a2d1c673SSatish Balay         for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; }
1020a2d1c673SSatish Balay         if (j < n) ncols = j-i;
1021a2d1c673SSatish Balay         else       ncols = n-i;
102293fea6afSBarry Smith         ierr = MatSetValuesBlocked_MPIBAIJ_MatScalar(mat,1,row+i,ncols,col+i,val+i*bs2,addv);CHKERRQ(ierr);
1023a2d1c673SSatish Balay         i = j;
1024a2d1c673SSatish Balay       }
1025a2d1c673SSatish Balay     }
10268798bf22SSatish Balay     ierr = MatStashScatterEnd_Private(&mat->bstash);CHKERRQ(ierr);
1027a2d1c673SSatish Balay     baij->roworiented = r1;
1028a2d1c673SSatish Balay     a->roworiented    = r2;
102991c97fd4SSatish Balay     ((Mat_SeqBAIJ*)baij->B->data)->roworiented    = r3; /* b->roworiented */
1030bbb85fb3SSatish Balay   }
1031bbb85fb3SSatish Balay 
1032bbb85fb3SSatish Balay   ierr = MatAssemblyBegin(baij->A,mode);CHKERRQ(ierr);
1033bbb85fb3SSatish Balay   ierr = MatAssemblyEnd(baij->A,mode);CHKERRQ(ierr);
1034bbb85fb3SSatish Balay 
1035bbb85fb3SSatish Balay   /* determine if any processor has disassembled, if so we must
1036bbb85fb3SSatish Balay      also disassemble ourselfs, in order that we may reassemble. */
1037bbb85fb3SSatish Balay   /*
1038bbb85fb3SSatish Balay      if nonzero structure of submatrix B cannot change then we know that
1039bbb85fb3SSatish Balay      no processor disassembled thus we can skip this stuff
1040bbb85fb3SSatish Balay   */
1041bbb85fb3SSatish Balay   if (!((Mat_SeqBAIJ*)baij->B->data)->nonew)  {
1042bbb85fb3SSatish Balay     ierr = MPI_Allreduce(&mat->was_assembled,&other_disassembled,1,MPI_INT,MPI_PROD,mat->comm);CHKERRQ(ierr);
1043bbb85fb3SSatish Balay     if (mat->was_assembled && !other_disassembled) {
1044bbb85fb3SSatish Balay       ierr = DisAssemble_MPIBAIJ(mat);CHKERRQ(ierr);
1045bbb85fb3SSatish Balay     }
1046bbb85fb3SSatish Balay   }
1047bbb85fb3SSatish Balay 
1048bbb85fb3SSatish Balay   if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) {
1049bbb85fb3SSatish Balay     ierr = MatSetUpMultiply_MPIBAIJ(mat);CHKERRQ(ierr);
1050bbb85fb3SSatish Balay   }
105191c97fd4SSatish Balay   ((Mat_SeqBAIJ*)baij->B->data)->compressedrow.use = PETSC_TRUE; /* b->compressedrow.use */
1052bbb85fb3SSatish Balay   ierr = MatAssemblyBegin(baij->B,mode);CHKERRQ(ierr);
1053bbb85fb3SSatish Balay   ierr = MatAssemblyEnd(baij->B,mode);CHKERRQ(ierr);
1054bbb85fb3SSatish Balay 
10556cf91177SBarry Smith #if defined(PETSC_USE_INFO)
1056bbb85fb3SSatish Balay   if (baij->ht && mode== MAT_FINAL_ASSEMBLY) {
1057ae15b995SBarry Smith     ierr = PetscInfo1(0,"Average Hash Table Search in MatSetValues = %5.2f\n",((PetscReal)baij->ht_total_ct)/baij->ht_insert_ct);CHKERRQ(ierr);
1058bbb85fb3SSatish Balay     baij->ht_total_ct  = 0;
1059bbb85fb3SSatish Balay     baij->ht_insert_ct = 0;
1060bbb85fb3SSatish Balay   }
1061bbb85fb3SSatish Balay #endif
1062bbb85fb3SSatish Balay   if (baij->ht_flag && !baij->ht && mode == MAT_FINAL_ASSEMBLY) {
1063bbb85fb3SSatish Balay     ierr = MatCreateHashTable_MPIBAIJ_Private(mat,baij->ht_fact);CHKERRQ(ierr);
1064bbb85fb3SSatish Balay     mat->ops->setvalues        = MatSetValues_MPIBAIJ_HT;
1065bbb85fb3SSatish Balay     mat->ops->setvaluesblocked = MatSetValuesBlocked_MPIBAIJ_HT;
1066bbb85fb3SSatish Balay   }
1067bbb85fb3SSatish Balay 
1068606d414cSSatish Balay   ierr = PetscFree(baij->rowvalues);CHKERRQ(ierr);
1069606d414cSSatish Balay   baij->rowvalues = 0;
1070bbb85fb3SSatish Balay   PetscFunctionReturn(0);
1071bbb85fb3SSatish Balay }
107257b952d6SSatish Balay 
10734a2ae208SSatish Balay #undef __FUNCT__
10744a2ae208SSatish Balay #define __FUNCT__ "MatView_MPIBAIJ_ASCIIorDraworSocket"
10756849ba73SBarry Smith static PetscErrorCode MatView_MPIBAIJ_ASCIIorDraworSocket(Mat mat,PetscViewer viewer)
107657b952d6SSatish Balay {
107757b952d6SSatish Balay   Mat_MPIBAIJ       *baij = (Mat_MPIBAIJ*)mat->data;
1078dfbe8321SBarry Smith   PetscErrorCode    ierr;
1079b24ad042SBarry Smith   PetscMPIInt       size = baij->size,rank = baij->rank;
1080899cda47SBarry Smith   PetscInt          bs = mat->rmap.bs;
108132077d6dSBarry Smith   PetscTruth        iascii,isdraw;
1082b0a32e0cSBarry Smith   PetscViewer       sviewer;
1083f3ef73ceSBarry Smith   PetscViewerFormat format;
108457b952d6SSatish Balay 
1085d64ed03dSBarry Smith   PetscFunctionBegin;
1086f81bd7ccSHong Zhang   /* printf(" MatView_MPIBAIJ_ASCIIorDraworSocket is called ...\n"); */
108732077d6dSBarry Smith   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&iascii);CHKERRQ(ierr);
1088fb9695e5SSatish Balay   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr);
108932077d6dSBarry Smith   if (iascii) {
1090b0a32e0cSBarry Smith     ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr);
1091456192e2SBarry Smith     if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) {
10924e220ebcSLois Curfman McInnes       MatInfo info;
1093d132466eSBarry Smith       ierr = MPI_Comm_rank(mat->comm,&rank);CHKERRQ(ierr);
1094d41123aaSBarry Smith       ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr);
109577431f27SBarry Smith       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Local rows %D nz %D nz alloced %D bs %D mem %D\n",
1096899cda47SBarry Smith               rank,mat->rmap.N,(PetscInt)info.nz_used*bs,(PetscInt)info.nz_allocated*bs,
1097899cda47SBarry Smith               mat->rmap.bs,(PetscInt)info.memory);CHKERRQ(ierr);
1098d132466eSBarry Smith       ierr = MatGetInfo(baij->A,MAT_LOCAL,&info);CHKERRQ(ierr);
109977431f27SBarry Smith       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] on-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used*bs);CHKERRQ(ierr);
1100d132466eSBarry Smith       ierr = MatGetInfo(baij->B,MAT_LOCAL,&info);CHKERRQ(ierr);
110177431f27SBarry Smith       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] off-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used*bs);CHKERRQ(ierr);
1102b0a32e0cSBarry Smith       ierr = PetscViewerFlush(viewer);CHKERRQ(ierr);
110357b952d6SSatish Balay       ierr = VecScatterView(baij->Mvctx,viewer);CHKERRQ(ierr);
11043a40ed3dSBarry Smith       PetscFunctionReturn(0);
1105fb9695e5SSatish Balay     } else if (format == PETSC_VIEWER_ASCII_INFO) {
110677431f27SBarry Smith       ierr = PetscViewerASCIIPrintf(viewer,"  block size is %D\n",bs);CHKERRQ(ierr);
11073a40ed3dSBarry Smith       PetscFunctionReturn(0);
110804929863SHong Zhang     } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) {
110904929863SHong Zhang       PetscFunctionReturn(0);
111057b952d6SSatish Balay     }
111157b952d6SSatish Balay   }
111257b952d6SSatish Balay 
11130f5bd95cSBarry Smith   if (isdraw) {
1114b0a32e0cSBarry Smith     PetscDraw       draw;
111557b952d6SSatish Balay     PetscTruth isnull;
1116b0a32e0cSBarry Smith     ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr);
1117b0a32e0cSBarry Smith     ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); if (isnull) PetscFunctionReturn(0);
111857b952d6SSatish Balay   }
111957b952d6SSatish Balay 
112057b952d6SSatish Balay   if (size == 1) {
1121873048abSBarry Smith     ierr = PetscObjectSetName((PetscObject)baij->A,mat->name);CHKERRQ(ierr);
112257b952d6SSatish Balay     ierr = MatView(baij->A,viewer);CHKERRQ(ierr);
1123d64ed03dSBarry Smith   } else {
112457b952d6SSatish Balay     /* assemble the entire matrix onto first processor. */
112557b952d6SSatish Balay     Mat         A;
112657b952d6SSatish Balay     Mat_SeqBAIJ *Aloc;
1127899cda47SBarry Smith     PetscInt    M = mat->rmap.N,N = mat->cmap.N,*ai,*aj,col,i,j,k,*rvals,mbs = baij->mbs;
11283eda8832SBarry Smith     MatScalar   *a;
112957b952d6SSatish Balay 
1130f204ca49SKris Buschelman     /* Here we are creating a temporary matrix, so will assume MPIBAIJ is acceptable */
1131f204ca49SKris Buschelman     /* Perhaps this should be the type of mat? */
1132f69a0ea3SMatthew Knepley     ierr = MatCreate(mat->comm,&A);CHKERRQ(ierr);
113357b952d6SSatish Balay     if (!rank) {
1134f69a0ea3SMatthew Knepley       ierr = MatSetSizes(A,M,N,M,N);CHKERRQ(ierr);
1135d64ed03dSBarry Smith     } else {
1136f69a0ea3SMatthew Knepley       ierr = MatSetSizes(A,0,0,M,N);CHKERRQ(ierr);
113757b952d6SSatish Balay     }
1138f204ca49SKris Buschelman     ierr = MatSetType(A,MATMPIBAIJ);CHKERRQ(ierr);
1139899cda47SBarry Smith     ierr = MatMPIBAIJSetPreallocation(A,mat->rmap.bs,0,PETSC_NULL,0,PETSC_NULL);CHKERRQ(ierr);
114052e6d16bSBarry Smith     ierr = PetscLogObjectParent(mat,A);CHKERRQ(ierr);
114157b952d6SSatish Balay 
114257b952d6SSatish Balay     /* copy over the A part */
114357b952d6SSatish Balay     Aloc = (Mat_SeqBAIJ*)baij->A->data;
114457b952d6SSatish Balay     ai   = Aloc->i; aj = Aloc->j; a = Aloc->a;
1145b24ad042SBarry Smith     ierr = PetscMalloc(bs*sizeof(PetscInt),&rvals);CHKERRQ(ierr);
114657b952d6SSatish Balay 
114757b952d6SSatish Balay     for (i=0; i<mbs; i++) {
1148899cda47SBarry Smith       rvals[0] = bs*(baij->rstartbs + i);
114957b952d6SSatish Balay       for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; }
115057b952d6SSatish Balay       for (j=ai[i]; j<ai[i+1]; j++) {
1151899cda47SBarry Smith         col = (baij->cstartbs+aj[j])*bs;
115257b952d6SSatish Balay         for (k=0; k<bs; k++) {
115393fea6afSBarry Smith           ierr = MatSetValues_MPIBAIJ_MatScalar(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr);
1154cee3aa6bSSatish Balay           col++; a += bs;
115557b952d6SSatish Balay         }
115657b952d6SSatish Balay       }
115757b952d6SSatish Balay     }
115857b952d6SSatish Balay     /* copy over the B part */
115957b952d6SSatish Balay     Aloc = (Mat_SeqBAIJ*)baij->B->data;
116057b952d6SSatish Balay     ai = Aloc->i; aj = Aloc->j; a = Aloc->a;
116157b952d6SSatish Balay     for (i=0; i<mbs; i++) {
1162899cda47SBarry Smith       rvals[0] = bs*(baij->rstartbs + i);
116357b952d6SSatish Balay       for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; }
116457b952d6SSatish Balay       for (j=ai[i]; j<ai[i+1]; j++) {
116557b952d6SSatish Balay         col = baij->garray[aj[j]]*bs;
116657b952d6SSatish Balay         for (k=0; k<bs; k++) {
116793fea6afSBarry Smith           ierr = MatSetValues_MPIBAIJ_MatScalar(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr);
1168cee3aa6bSSatish Balay           col++; a += bs;
116957b952d6SSatish Balay         }
117057b952d6SSatish Balay       }
117157b952d6SSatish Balay     }
1172606d414cSSatish Balay     ierr = PetscFree(rvals);CHKERRQ(ierr);
11736d4a8577SBarry Smith     ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
11746d4a8577SBarry Smith     ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
117555843e3eSBarry Smith     /*
117655843e3eSBarry Smith        Everyone has to call to draw the matrix since the graphics waits are
1177b0a32e0cSBarry Smith        synchronized across all processors that share the PetscDraw object
117855843e3eSBarry Smith     */
1179b0a32e0cSBarry Smith     ierr = PetscViewerGetSingleton(viewer,&sviewer);CHKERRQ(ierr);
1180f14a1c24SBarry Smith     if (!rank) {
1181e36acaf3SBarry Smith       ierr = PetscObjectSetName((PetscObject)((Mat_MPIBAIJ*)(A->data))->A,mat->name);CHKERRQ(ierr);
11826831982aSBarry Smith       ierr = MatView(((Mat_MPIBAIJ*)(A->data))->A,sviewer);CHKERRQ(ierr);
118357b952d6SSatish Balay     }
1184b0a32e0cSBarry Smith     ierr = PetscViewerRestoreSingleton(viewer,&sviewer);CHKERRQ(ierr);
118557b952d6SSatish Balay     ierr = MatDestroy(A);CHKERRQ(ierr);
118657b952d6SSatish Balay   }
11873a40ed3dSBarry Smith   PetscFunctionReturn(0);
118857b952d6SSatish Balay }
118957b952d6SSatish Balay 
11904a2ae208SSatish Balay #undef __FUNCT__
11914a2ae208SSatish Balay #define __FUNCT__ "MatView_MPIBAIJ"
1192dfbe8321SBarry Smith PetscErrorCode MatView_MPIBAIJ(Mat mat,PetscViewer viewer)
119357b952d6SSatish Balay {
1194dfbe8321SBarry Smith   PetscErrorCode ierr;
119532077d6dSBarry Smith   PetscTruth     iascii,isdraw,issocket,isbinary;
119657b952d6SSatish Balay 
1197d64ed03dSBarry Smith   PetscFunctionBegin;
119832077d6dSBarry Smith   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&iascii);CHKERRQ(ierr);
1199fb9695e5SSatish Balay   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr);
1200b0a32e0cSBarry Smith   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_SOCKET,&issocket);CHKERRQ(ierr);
1201fb9695e5SSatish Balay   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_BINARY,&isbinary);CHKERRQ(ierr);
120232077d6dSBarry Smith   if (iascii || isdraw || issocket || isbinary) {
12037b2a1423SBarry Smith     ierr = MatView_MPIBAIJ_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr);
12045cd90555SBarry Smith   } else {
120579a5c55eSBarry Smith     SETERRQ1(PETSC_ERR_SUP,"Viewer type %s not supported by MPIBAIJ matrices",((PetscObject)viewer)->type_name);
120657b952d6SSatish Balay   }
12073a40ed3dSBarry Smith   PetscFunctionReturn(0);
120857b952d6SSatish Balay }
120957b952d6SSatish Balay 
12104a2ae208SSatish Balay #undef __FUNCT__
12114a2ae208SSatish Balay #define __FUNCT__ "MatDestroy_MPIBAIJ"
1212dfbe8321SBarry Smith PetscErrorCode MatDestroy_MPIBAIJ(Mat mat)
121379bdfe76SSatish Balay {
121479bdfe76SSatish Balay   Mat_MPIBAIJ    *baij = (Mat_MPIBAIJ*)mat->data;
1215dfbe8321SBarry Smith   PetscErrorCode ierr;
121679bdfe76SSatish Balay 
1217d64ed03dSBarry Smith   PetscFunctionBegin;
1218aa482453SBarry Smith #if defined(PETSC_USE_LOG)
1219899cda47SBarry Smith   PetscLogObjectState((PetscObject)mat,"Rows=%D,Cols=%D",mat->rmap.N,mat->cmap.N);
122079bdfe76SSatish Balay #endif
12218798bf22SSatish Balay   ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr);
12228798bf22SSatish Balay   ierr = MatStashDestroy_Private(&mat->bstash);CHKERRQ(ierr);
122379bdfe76SSatish Balay   ierr = MatDestroy(baij->A);CHKERRQ(ierr);
122479bdfe76SSatish Balay   ierr = MatDestroy(baij->B);CHKERRQ(ierr);
1225aa482453SBarry Smith #if defined (PETSC_USE_CTABLE)
12260f5bd95cSBarry Smith   if (baij->colmap) {ierr = PetscTableDelete(baij->colmap);CHKERRQ(ierr);}
122748e59246SSatish Balay #else
122805b42c5fSBarry Smith   ierr = PetscFree(baij->colmap);CHKERRQ(ierr);
122948e59246SSatish Balay #endif
123005b42c5fSBarry Smith   ierr = PetscFree(baij->garray);CHKERRQ(ierr);
1231606d414cSSatish Balay   if (baij->lvec)   {ierr = VecDestroy(baij->lvec);CHKERRQ(ierr);}
1232606d414cSSatish Balay   if (baij->Mvctx)  {ierr = VecScatterDestroy(baij->Mvctx);CHKERRQ(ierr);}
123305b42c5fSBarry Smith   ierr = PetscFree(baij->rowvalues);CHKERRQ(ierr);
123405b42c5fSBarry Smith   ierr = PetscFree(baij->barray);CHKERRQ(ierr);
123505b42c5fSBarry Smith   ierr = PetscFree(baij->hd);CHKERRQ(ierr);
12366fa18ffdSBarry Smith #if defined(PETSC_USE_MAT_SINGLE)
123705b42c5fSBarry Smith   ierr = PetscFree(baij->setvaluescopy);CHKERRQ(ierr);
12386fa18ffdSBarry Smith #endif
1239899cda47SBarry Smith   ierr = PetscFree(baij->rangebs);CHKERRQ(ierr);
1240606d414cSSatish Balay   ierr = PetscFree(baij);CHKERRQ(ierr);
1241901853e0SKris Buschelman 
1242901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatStoreValues_C","",PETSC_NULL);CHKERRQ(ierr);
1243901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatRetrieveValues_C","",PETSC_NULL);CHKERRQ(ierr);
1244901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatGetDiagonalBlock_C","",PETSC_NULL);CHKERRQ(ierr);
1245901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPIBAIJSetPreallocation_C","",PETSC_NULL);CHKERRQ(ierr);
1246aac34f13SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPIBAIJSetPreallocationCSR_C","",PETSC_NULL);CHKERRQ(ierr);
1247901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDiagonalScaleLocal_C","",PETSC_NULL);CHKERRQ(ierr);
1248901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatSetHashTableFactor_C","",PETSC_NULL);CHKERRQ(ierr);
12493a40ed3dSBarry Smith   PetscFunctionReturn(0);
125079bdfe76SSatish Balay }
125179bdfe76SSatish Balay 
12524a2ae208SSatish Balay #undef __FUNCT__
12534a2ae208SSatish Balay #define __FUNCT__ "MatMult_MPIBAIJ"
1254dfbe8321SBarry Smith PetscErrorCode MatMult_MPIBAIJ(Mat A,Vec xx,Vec yy)
1255cee3aa6bSSatish Balay {
1256cee3aa6bSSatish Balay   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)A->data;
1257dfbe8321SBarry Smith   PetscErrorCode ierr;
1258b24ad042SBarry Smith   PetscInt       nt;
1259cee3aa6bSSatish Balay 
1260d64ed03dSBarry Smith   PetscFunctionBegin;
1261e1311b90SBarry Smith   ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr);
1262899cda47SBarry Smith   if (nt != A->cmap.n) {
126329bbc08cSBarry Smith     SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx");
126447b4a8eaSLois Curfman McInnes   }
1265e1311b90SBarry Smith   ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr);
1266899cda47SBarry Smith   if (nt != A->rmap.n) {
126729bbc08cSBarry Smith     SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible parition of A and yy");
126847b4a8eaSLois Curfman McInnes   }
126943a90d84SBarry Smith   ierr = VecScatterBegin(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr);
1270f830108cSBarry Smith   ierr = (*a->A->ops->mult)(a->A,xx,yy);CHKERRQ(ierr);
127143a90d84SBarry Smith   ierr = VecScatterEnd(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr);
1272f830108cSBarry Smith   ierr = (*a->B->ops->multadd)(a->B,a->lvec,yy,yy);CHKERRQ(ierr);
12733a40ed3dSBarry Smith   PetscFunctionReturn(0);
1274cee3aa6bSSatish Balay }
1275cee3aa6bSSatish Balay 
12764a2ae208SSatish Balay #undef __FUNCT__
12774a2ae208SSatish Balay #define __FUNCT__ "MatMultAdd_MPIBAIJ"
1278dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPIBAIJ(Mat A,Vec xx,Vec yy,Vec zz)
1279cee3aa6bSSatish Balay {
1280cee3aa6bSSatish Balay   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)A->data;
1281dfbe8321SBarry Smith   PetscErrorCode ierr;
1282d64ed03dSBarry Smith 
1283d64ed03dSBarry Smith   PetscFunctionBegin;
128443a90d84SBarry Smith   ierr = VecScatterBegin(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr);
1285f830108cSBarry Smith   ierr = (*a->A->ops->multadd)(a->A,xx,yy,zz);CHKERRQ(ierr);
128643a90d84SBarry Smith   ierr = VecScatterEnd(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr);
1287f830108cSBarry Smith   ierr = (*a->B->ops->multadd)(a->B,a->lvec,zz,zz);CHKERRQ(ierr);
12883a40ed3dSBarry Smith   PetscFunctionReturn(0);
1289cee3aa6bSSatish Balay }
1290cee3aa6bSSatish Balay 
12914a2ae208SSatish Balay #undef __FUNCT__
12924a2ae208SSatish Balay #define __FUNCT__ "MatMultTranspose_MPIBAIJ"
1293dfbe8321SBarry Smith PetscErrorCode MatMultTranspose_MPIBAIJ(Mat A,Vec xx,Vec yy)
1294cee3aa6bSSatish Balay {
1295cee3aa6bSSatish Balay   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)A->data;
1296dfbe8321SBarry Smith   PetscErrorCode ierr;
1297a5ff213dSBarry Smith   PetscTruth     merged;
1298cee3aa6bSSatish Balay 
1299d64ed03dSBarry Smith   PetscFunctionBegin;
1300a5ff213dSBarry Smith   ierr = VecScatterGetMerged(a->Mvctx,&merged);CHKERRQ(ierr);
1301cee3aa6bSSatish Balay   /* do nondiagonal part */
13027c922b88SBarry Smith   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr);
1303a5ff213dSBarry Smith   if (!merged) {
1304cee3aa6bSSatish Balay     /* send it on its way */
1305537820f0SBarry Smith     ierr = VecScatterBegin(a->lvec,yy,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr);
1306cee3aa6bSSatish Balay     /* do local part */
13077c922b88SBarry Smith     ierr = (*a->A->ops->multtranspose)(a->A,xx,yy);CHKERRQ(ierr);
1308cee3aa6bSSatish Balay     /* receive remote parts: note this assumes the values are not actually */
1309a5ff213dSBarry Smith     /* inserted in yy until the next line */
1310639f9d9dSBarry Smith     ierr = VecScatterEnd(a->lvec,yy,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr);
1311a5ff213dSBarry Smith   } else {
1312a5ff213dSBarry Smith     /* do local part */
1313a5ff213dSBarry Smith     ierr = (*a->A->ops->multtranspose)(a->A,xx,yy);CHKERRQ(ierr);
1314a5ff213dSBarry Smith     /* send it on its way */
1315a5ff213dSBarry Smith     ierr = VecScatterBegin(a->lvec,yy,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr);
1316a5ff213dSBarry Smith     /* values actually were received in the Begin() but we need to call this nop */
1317a5ff213dSBarry Smith     ierr = VecScatterEnd(a->lvec,yy,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr);
1318a5ff213dSBarry Smith   }
13193a40ed3dSBarry Smith   PetscFunctionReturn(0);
1320cee3aa6bSSatish Balay }
1321cee3aa6bSSatish Balay 
13224a2ae208SSatish Balay #undef __FUNCT__
13234a2ae208SSatish Balay #define __FUNCT__ "MatMultTransposeAdd_MPIBAIJ"
1324dfbe8321SBarry Smith PetscErrorCode MatMultTransposeAdd_MPIBAIJ(Mat A,Vec xx,Vec yy,Vec zz)
1325cee3aa6bSSatish Balay {
1326cee3aa6bSSatish Balay   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)A->data;
1327dfbe8321SBarry Smith   PetscErrorCode ierr;
1328cee3aa6bSSatish Balay 
1329d64ed03dSBarry Smith   PetscFunctionBegin;
1330cee3aa6bSSatish Balay   /* do nondiagonal part */
13317c922b88SBarry Smith   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr);
1332cee3aa6bSSatish Balay   /* send it on its way */
1333537820f0SBarry Smith   ierr = VecScatterBegin(a->lvec,zz,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr);
1334cee3aa6bSSatish Balay   /* do local part */
13357c922b88SBarry Smith   ierr = (*a->A->ops->multtransposeadd)(a->A,xx,yy,zz);CHKERRQ(ierr);
1336cee3aa6bSSatish Balay   /* receive remote parts: note this assumes the values are not actually */
1337cee3aa6bSSatish Balay   /* inserted in yy until the next line, which is true for my implementation*/
1338cee3aa6bSSatish Balay   /* but is not perhaps always true. */
1339537820f0SBarry Smith   ierr = VecScatterEnd(a->lvec,zz,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr);
13403a40ed3dSBarry Smith   PetscFunctionReturn(0);
1341cee3aa6bSSatish Balay }
1342cee3aa6bSSatish Balay 
1343cee3aa6bSSatish Balay /*
1344cee3aa6bSSatish Balay   This only works correctly for square matrices where the subblock A->A is the
1345cee3aa6bSSatish Balay    diagonal block
1346cee3aa6bSSatish Balay */
13474a2ae208SSatish Balay #undef __FUNCT__
13484a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonal_MPIBAIJ"
1349dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_MPIBAIJ(Mat A,Vec v)
1350cee3aa6bSSatish Balay {
1351cee3aa6bSSatish Balay   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)A->data;
1352dfbe8321SBarry Smith   PetscErrorCode ierr;
1353d64ed03dSBarry Smith 
1354d64ed03dSBarry Smith   PetscFunctionBegin;
1355899cda47SBarry Smith   if (A->rmap.N != A->cmap.N) SETERRQ(PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block");
13563a40ed3dSBarry Smith   ierr = MatGetDiagonal(a->A,v);CHKERRQ(ierr);
13573a40ed3dSBarry Smith   PetscFunctionReturn(0);
1358cee3aa6bSSatish Balay }
1359cee3aa6bSSatish Balay 
13604a2ae208SSatish Balay #undef __FUNCT__
13614a2ae208SSatish Balay #define __FUNCT__ "MatScale_MPIBAIJ"
1362f4df32b1SMatthew Knepley PetscErrorCode MatScale_MPIBAIJ(Mat A,PetscScalar aa)
1363cee3aa6bSSatish Balay {
1364cee3aa6bSSatish Balay   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)A->data;
1365dfbe8321SBarry Smith   PetscErrorCode ierr;
1366d64ed03dSBarry Smith 
1367d64ed03dSBarry Smith   PetscFunctionBegin;
1368f4df32b1SMatthew Knepley   ierr = MatScale(a->A,aa);CHKERRQ(ierr);
1369f4df32b1SMatthew Knepley   ierr = MatScale(a->B,aa);CHKERRQ(ierr);
13703a40ed3dSBarry Smith   PetscFunctionReturn(0);
1371cee3aa6bSSatish Balay }
1372026e39d0SSatish Balay 
13734a2ae208SSatish Balay #undef __FUNCT__
13744a2ae208SSatish Balay #define __FUNCT__ "MatGetRow_MPIBAIJ"
1375b24ad042SBarry Smith PetscErrorCode MatGetRow_MPIBAIJ(Mat matin,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v)
1376acdf5bf4SSatish Balay {
1377acdf5bf4SSatish Balay   Mat_MPIBAIJ    *mat = (Mat_MPIBAIJ*)matin->data;
137887828ca2SBarry Smith   PetscScalar    *vworkA,*vworkB,**pvA,**pvB,*v_p;
13796849ba73SBarry Smith   PetscErrorCode ierr;
1380899cda47SBarry Smith   PetscInt       bs = matin->rmap.bs,bs2 = mat->bs2,i,*cworkA,*cworkB,**pcA,**pcB;
1381899cda47SBarry Smith   PetscInt       nztot,nzA,nzB,lrow,brstart = matin->rmap.rstart,brend = matin->rmap.rend;
1382899cda47SBarry Smith   PetscInt       *cmap,*idx_p,cstart = mat->cstartbs;
1383acdf5bf4SSatish Balay 
1384d64ed03dSBarry Smith   PetscFunctionBegin;
1385abc0a331SBarry Smith   if (mat->getrowactive) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Already active");
1386acdf5bf4SSatish Balay   mat->getrowactive = PETSC_TRUE;
1387acdf5bf4SSatish Balay 
1388acdf5bf4SSatish Balay   if (!mat->rowvalues && (idx || v)) {
1389acdf5bf4SSatish Balay     /*
1390acdf5bf4SSatish Balay         allocate enough space to hold information from the longest row.
1391acdf5bf4SSatish Balay     */
1392acdf5bf4SSatish Balay     Mat_SeqBAIJ *Aa = (Mat_SeqBAIJ*)mat->A->data,*Ba = (Mat_SeqBAIJ*)mat->B->data;
1393b24ad042SBarry Smith     PetscInt     max = 1,mbs = mat->mbs,tmp;
1394bd16c2feSSatish Balay     for (i=0; i<mbs; i++) {
1395acdf5bf4SSatish Balay       tmp = Aa->i[i+1] - Aa->i[i] + Ba->i[i+1] - Ba->i[i];
1396acdf5bf4SSatish Balay       if (max < tmp) { max = tmp; }
1397acdf5bf4SSatish Balay     }
1398b24ad042SBarry Smith     ierr = PetscMalloc(max*bs2*(sizeof(PetscInt)+sizeof(PetscScalar)),&mat->rowvalues);CHKERRQ(ierr);
1399b24ad042SBarry Smith     mat->rowindices = (PetscInt*)(mat->rowvalues + max*bs2);
1400acdf5bf4SSatish Balay   }
1401acdf5bf4SSatish Balay 
140229bbc08cSBarry Smith   if (row < brstart || row >= brend) SETERRQ(PETSC_ERR_SUP,"Only local rows")
1403d9d09a02SSatish Balay   lrow = row - brstart;
1404acdf5bf4SSatish Balay 
1405acdf5bf4SSatish Balay   pvA = &vworkA; pcA = &cworkA; pvB = &vworkB; pcB = &cworkB;
1406acdf5bf4SSatish Balay   if (!v)   {pvA = 0; pvB = 0;}
1407acdf5bf4SSatish Balay   if (!idx) {pcA = 0; if (!v) pcB = 0;}
1408f830108cSBarry Smith   ierr = (*mat->A->ops->getrow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr);
1409f830108cSBarry Smith   ierr = (*mat->B->ops->getrow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr);
1410acdf5bf4SSatish Balay   nztot = nzA + nzB;
1411acdf5bf4SSatish Balay 
1412acdf5bf4SSatish Balay   cmap  = mat->garray;
1413acdf5bf4SSatish Balay   if (v  || idx) {
1414acdf5bf4SSatish Balay     if (nztot) {
1415acdf5bf4SSatish Balay       /* Sort by increasing column numbers, assuming A and B already sorted */
1416b24ad042SBarry Smith       PetscInt imark = -1;
1417acdf5bf4SSatish Balay       if (v) {
1418acdf5bf4SSatish Balay         *v = v_p = mat->rowvalues;
1419acdf5bf4SSatish Balay         for (i=0; i<nzB; i++) {
1420d9d09a02SSatish Balay           if (cmap[cworkB[i]/bs] < cstart)   v_p[i] = vworkB[i];
1421acdf5bf4SSatish Balay           else break;
1422acdf5bf4SSatish Balay         }
1423acdf5bf4SSatish Balay         imark = i;
1424acdf5bf4SSatish Balay         for (i=0; i<nzA; i++)     v_p[imark+i] = vworkA[i];
1425acdf5bf4SSatish Balay         for (i=imark; i<nzB; i++) v_p[nzA+i]   = vworkB[i];
1426acdf5bf4SSatish Balay       }
1427acdf5bf4SSatish Balay       if (idx) {
1428acdf5bf4SSatish Balay         *idx = idx_p = mat->rowindices;
1429acdf5bf4SSatish Balay         if (imark > -1) {
1430acdf5bf4SSatish Balay           for (i=0; i<imark; i++) {
1431bd16c2feSSatish Balay             idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs;
1432acdf5bf4SSatish Balay           }
1433acdf5bf4SSatish Balay         } else {
1434acdf5bf4SSatish Balay           for (i=0; i<nzB; i++) {
1435d9d09a02SSatish Balay             if (cmap[cworkB[i]/bs] < cstart)
1436d9d09a02SSatish Balay               idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ;
1437acdf5bf4SSatish Balay             else break;
1438acdf5bf4SSatish Balay           }
1439acdf5bf4SSatish Balay           imark = i;
1440acdf5bf4SSatish Balay         }
1441d9d09a02SSatish Balay         for (i=0; i<nzA; i++)     idx_p[imark+i] = cstart*bs + cworkA[i];
1442d9d09a02SSatish Balay         for (i=imark; i<nzB; i++) idx_p[nzA+i]   = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ;
1443acdf5bf4SSatish Balay       }
1444d64ed03dSBarry Smith     } else {
1445d212a18eSSatish Balay       if (idx) *idx = 0;
1446d212a18eSSatish Balay       if (v)   *v   = 0;
1447d212a18eSSatish Balay     }
1448acdf5bf4SSatish Balay   }
1449acdf5bf4SSatish Balay   *nz = nztot;
1450f830108cSBarry Smith   ierr = (*mat->A->ops->restorerow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr);
1451f830108cSBarry Smith   ierr = (*mat->B->ops->restorerow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr);
14523a40ed3dSBarry Smith   PetscFunctionReturn(0);
1453acdf5bf4SSatish Balay }
1454acdf5bf4SSatish Balay 
14554a2ae208SSatish Balay #undef __FUNCT__
14564a2ae208SSatish Balay #define __FUNCT__ "MatRestoreRow_MPIBAIJ"
1457b24ad042SBarry Smith PetscErrorCode MatRestoreRow_MPIBAIJ(Mat mat,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v)
1458acdf5bf4SSatish Balay {
1459acdf5bf4SSatish Balay   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data;
1460d64ed03dSBarry Smith 
1461d64ed03dSBarry Smith   PetscFunctionBegin;
1462abc0a331SBarry Smith   if (!baij->getrowactive) {
146329bbc08cSBarry Smith     SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"MatGetRow not called");
1464acdf5bf4SSatish Balay   }
1465acdf5bf4SSatish Balay   baij->getrowactive = PETSC_FALSE;
14663a40ed3dSBarry Smith   PetscFunctionReturn(0);
1467acdf5bf4SSatish Balay }
1468acdf5bf4SSatish Balay 
14694a2ae208SSatish Balay #undef __FUNCT__
14704a2ae208SSatish Balay #define __FUNCT__ "MatZeroEntries_MPIBAIJ"
1471dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_MPIBAIJ(Mat A)
147258667388SSatish Balay {
147358667388SSatish Balay   Mat_MPIBAIJ    *l = (Mat_MPIBAIJ*)A->data;
1474dfbe8321SBarry Smith   PetscErrorCode ierr;
1475d64ed03dSBarry Smith 
1476d64ed03dSBarry Smith   PetscFunctionBegin;
147758667388SSatish Balay   ierr = MatZeroEntries(l->A);CHKERRQ(ierr);
147858667388SSatish Balay   ierr = MatZeroEntries(l->B);CHKERRQ(ierr);
14793a40ed3dSBarry Smith   PetscFunctionReturn(0);
148058667388SSatish Balay }
14810ac07820SSatish Balay 
14824a2ae208SSatish Balay #undef __FUNCT__
14834a2ae208SSatish Balay #define __FUNCT__ "MatGetInfo_MPIBAIJ"
1484dfbe8321SBarry Smith PetscErrorCode MatGetInfo_MPIBAIJ(Mat matin,MatInfoType flag,MatInfo *info)
14850ac07820SSatish Balay {
14864e220ebcSLois Curfman McInnes   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)matin->data;
14874e220ebcSLois Curfman McInnes   Mat            A = a->A,B = a->B;
1488dfbe8321SBarry Smith   PetscErrorCode ierr;
1489329f5518SBarry Smith   PetscReal      isend[5],irecv[5];
14900ac07820SSatish Balay 
1491d64ed03dSBarry Smith   PetscFunctionBegin;
1492899cda47SBarry Smith   info->block_size     = (PetscReal)matin->rmap.bs;
14934e220ebcSLois Curfman McInnes   ierr = MatGetInfo(A,MAT_LOCAL,info);CHKERRQ(ierr);
14940e4b21beSBarry Smith   isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded;
1495de87f314SBarry Smith   isend[3] = info->memory;  isend[4] = info->mallocs;
14964e220ebcSLois Curfman McInnes   ierr = MatGetInfo(B,MAT_LOCAL,info);CHKERRQ(ierr);
14970e4b21beSBarry Smith   isend[0] += info->nz_used; isend[1] += info->nz_allocated; isend[2] += info->nz_unneeded;
1498de87f314SBarry Smith   isend[3] += info->memory;  isend[4] += info->mallocs;
14990ac07820SSatish Balay   if (flag == MAT_LOCAL) {
15004e220ebcSLois Curfman McInnes     info->nz_used      = isend[0];
15014e220ebcSLois Curfman McInnes     info->nz_allocated = isend[1];
15024e220ebcSLois Curfman McInnes     info->nz_unneeded  = isend[2];
15034e220ebcSLois Curfman McInnes     info->memory       = isend[3];
15044e220ebcSLois Curfman McInnes     info->mallocs      = isend[4];
15050ac07820SSatish Balay   } else if (flag == MAT_GLOBAL_MAX) {
1506d7d1e502SBarry Smith     ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_MAX,matin->comm);CHKERRQ(ierr);
15074e220ebcSLois Curfman McInnes     info->nz_used      = irecv[0];
15084e220ebcSLois Curfman McInnes     info->nz_allocated = irecv[1];
15094e220ebcSLois Curfman McInnes     info->nz_unneeded  = irecv[2];
15104e220ebcSLois Curfman McInnes     info->memory       = irecv[3];
15114e220ebcSLois Curfman McInnes     info->mallocs      = irecv[4];
15120ac07820SSatish Balay   } else if (flag == MAT_GLOBAL_SUM) {
1513d7d1e502SBarry Smith     ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_SUM,matin->comm);CHKERRQ(ierr);
15144e220ebcSLois Curfman McInnes     info->nz_used      = irecv[0];
15154e220ebcSLois Curfman McInnes     info->nz_allocated = irecv[1];
15164e220ebcSLois Curfman McInnes     info->nz_unneeded  = irecv[2];
15174e220ebcSLois Curfman McInnes     info->memory       = irecv[3];
15184e220ebcSLois Curfman McInnes     info->mallocs      = irecv[4];
1519d41123aaSBarry Smith   } else {
152077431f27SBarry Smith     SETERRQ1(PETSC_ERR_ARG_WRONG,"Unknown MatInfoType argument %d",(int)flag);
15210ac07820SSatish Balay   }
1522899cda47SBarry Smith   info->rows_global       = (PetscReal)A->rmap.N;
1523899cda47SBarry Smith   info->columns_global    = (PetscReal)A->cmap.N;
1524899cda47SBarry Smith   info->rows_local        = (PetscReal)A->rmap.N;
1525899cda47SBarry Smith   info->columns_local     = (PetscReal)A->cmap.N;
15264e220ebcSLois Curfman McInnes   info->fill_ratio_given  = 0; /* no parallel LU/ILU/Cholesky */
15274e220ebcSLois Curfman McInnes   info->fill_ratio_needed = 0;
15284e220ebcSLois Curfman McInnes   info->factor_mallocs    = 0;
15293a40ed3dSBarry Smith   PetscFunctionReturn(0);
15300ac07820SSatish Balay }
15310ac07820SSatish Balay 
15324a2ae208SSatish Balay #undef __FUNCT__
15334a2ae208SSatish Balay #define __FUNCT__ "MatSetOption_MPIBAIJ"
1534dfbe8321SBarry Smith PetscErrorCode MatSetOption_MPIBAIJ(Mat A,MatOption op)
153558667388SSatish Balay {
153658667388SSatish Balay   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)A->data;
1537dfbe8321SBarry Smith   PetscErrorCode ierr;
153858667388SSatish Balay 
1539d64ed03dSBarry Smith   PetscFunctionBegin;
154012c028f9SKris Buschelman   switch (op) {
154112c028f9SKris Buschelman   case MAT_NO_NEW_NONZERO_LOCATIONS:
154212c028f9SKris Buschelman   case MAT_YES_NEW_NONZERO_LOCATIONS:
154312c028f9SKris Buschelman   case MAT_COLUMNS_UNSORTED:
154412c028f9SKris Buschelman   case MAT_COLUMNS_SORTED:
154512c028f9SKris Buschelman   case MAT_NEW_NONZERO_ALLOCATION_ERR:
154612c028f9SKris Buschelman   case MAT_KEEP_ZEROED_ROWS:
154712c028f9SKris Buschelman   case MAT_NEW_NONZERO_LOCATION_ERR:
154898305bb5SBarry Smith     ierr = MatSetOption(a->A,op);CHKERRQ(ierr);
154998305bb5SBarry Smith     ierr = MatSetOption(a->B,op);CHKERRQ(ierr);
155012c028f9SKris Buschelman     break;
155112c028f9SKris Buschelman   case MAT_ROW_ORIENTED:
15527c922b88SBarry Smith     a->roworiented = PETSC_TRUE;
155398305bb5SBarry Smith     ierr = MatSetOption(a->A,op);CHKERRQ(ierr);
155498305bb5SBarry Smith     ierr = MatSetOption(a->B,op);CHKERRQ(ierr);
155512c028f9SKris Buschelman     break;
155612c028f9SKris Buschelman   case MAT_ROWS_SORTED:
155712c028f9SKris Buschelman   case MAT_ROWS_UNSORTED:
155812c028f9SKris Buschelman   case MAT_YES_NEW_DIAGONALS:
1559ae15b995SBarry Smith     ierr = PetscInfo(A,"Option ignored\n");CHKERRQ(ierr);
156012c028f9SKris Buschelman     break;
156112c028f9SKris Buschelman   case MAT_COLUMN_ORIENTED:
15627c922b88SBarry Smith     a->roworiented = PETSC_FALSE;
156398305bb5SBarry Smith     ierr = MatSetOption(a->A,op);CHKERRQ(ierr);
156498305bb5SBarry Smith     ierr = MatSetOption(a->B,op);CHKERRQ(ierr);
156512c028f9SKris Buschelman     break;
156612c028f9SKris Buschelman   case MAT_IGNORE_OFF_PROC_ENTRIES:
15677c922b88SBarry Smith     a->donotstash = PETSC_TRUE;
156812c028f9SKris Buschelman     break;
156912c028f9SKris Buschelman   case MAT_NO_NEW_DIAGONALS:
157029bbc08cSBarry Smith     SETERRQ(PETSC_ERR_SUP,"MAT_NO_NEW_DIAGONALS");
157112c028f9SKris Buschelman   case MAT_USE_HASH_TABLE:
15727c922b88SBarry Smith     a->ht_flag = PETSC_TRUE;
157312c028f9SKris Buschelman     break;
157477e54ba9SKris Buschelman   case MAT_SYMMETRIC:
157577e54ba9SKris Buschelman   case MAT_STRUCTURALLY_SYMMETRIC:
15762188ac68SBarry Smith   case MAT_HERMITIAN:
15772188ac68SBarry Smith   case MAT_SYMMETRY_ETERNAL:
15782188ac68SBarry Smith     ierr = MatSetOption(a->A,op);CHKERRQ(ierr);
15792188ac68SBarry Smith     break;
15809a4540c5SBarry Smith   case MAT_NOT_SYMMETRIC:
15819a4540c5SBarry Smith   case MAT_NOT_STRUCTURALLY_SYMMETRIC:
15829a4540c5SBarry Smith   case MAT_NOT_HERMITIAN:
15839a4540c5SBarry Smith   case MAT_NOT_SYMMETRY_ETERNAL:
158477e54ba9SKris Buschelman     break;
158512c028f9SKris Buschelman   default:
1586ad86a440SBarry Smith     SETERRQ1(PETSC_ERR_SUP,"unknown option %d",op);
1587d64ed03dSBarry Smith   }
15883a40ed3dSBarry Smith   PetscFunctionReturn(0);
158958667388SSatish Balay }
159058667388SSatish Balay 
15914a2ae208SSatish Balay #undef __FUNCT__
15924a2ae208SSatish Balay #define __FUNCT__ "MatTranspose_MPIBAIJ("
1593dfbe8321SBarry Smith PetscErrorCode MatTranspose_MPIBAIJ(Mat A,Mat *matout)
15940ac07820SSatish Balay {
15950ac07820SSatish Balay   Mat_MPIBAIJ    *baij = (Mat_MPIBAIJ*)A->data;
15960ac07820SSatish Balay   Mat_SeqBAIJ    *Aloc;
15970ac07820SSatish Balay   Mat            B;
1598dfbe8321SBarry Smith   PetscErrorCode ierr;
1599899cda47SBarry Smith   PetscInt       M=A->rmap.N,N=A->cmap.N,*ai,*aj,i,*rvals,j,k,col;
1600899cda47SBarry Smith   PetscInt       bs=A->rmap.bs,mbs=baij->mbs;
16013eda8832SBarry Smith   MatScalar      *a;
16020ac07820SSatish Balay 
1603d64ed03dSBarry Smith   PetscFunctionBegin;
160429bbc08cSBarry Smith   if (!matout && M != N) SETERRQ(PETSC_ERR_ARG_SIZ,"Square matrix only for in-place");
1605f69a0ea3SMatthew Knepley   ierr = MatCreate(A->comm,&B);CHKERRQ(ierr);
1606899cda47SBarry Smith   ierr = MatSetSizes(B,A->cmap.n,A->rmap.n,N,M);CHKERRQ(ierr);
1607f204ca49SKris Buschelman   ierr = MatSetType(B,A->type_name);CHKERRQ(ierr);
1608899cda47SBarry Smith   ierr = MatMPIBAIJSetPreallocation(B,A->rmap.bs,0,PETSC_NULL,0,PETSC_NULL);CHKERRQ(ierr);
16090ac07820SSatish Balay 
16100ac07820SSatish Balay   /* copy over the A part */
16110ac07820SSatish Balay   Aloc = (Mat_SeqBAIJ*)baij->A->data;
16120ac07820SSatish Balay   ai   = Aloc->i; aj = Aloc->j; a = Aloc->a;
1613b24ad042SBarry Smith   ierr = PetscMalloc(bs*sizeof(PetscInt),&rvals);CHKERRQ(ierr);
16140ac07820SSatish Balay 
16150ac07820SSatish Balay   for (i=0; i<mbs; i++) {
1616899cda47SBarry Smith     rvals[0] = bs*(baij->rstartbs + i);
16170ac07820SSatish Balay     for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; }
16180ac07820SSatish Balay     for (j=ai[i]; j<ai[i+1]; j++) {
1619899cda47SBarry Smith       col = (baij->cstartbs+aj[j])*bs;
16200ac07820SSatish Balay       for (k=0; k<bs; k++) {
162193fea6afSBarry Smith         ierr = MatSetValues_MPIBAIJ_MatScalar(B,1,&col,bs,rvals,a,INSERT_VALUES);CHKERRQ(ierr);
16220ac07820SSatish Balay         col++; a += bs;
16230ac07820SSatish Balay       }
16240ac07820SSatish Balay     }
16250ac07820SSatish Balay   }
16260ac07820SSatish Balay   /* copy over the B part */
16270ac07820SSatish Balay   Aloc = (Mat_SeqBAIJ*)baij->B->data;
16280ac07820SSatish Balay   ai = Aloc->i; aj = Aloc->j; a = Aloc->a;
16290ac07820SSatish Balay   for (i=0; i<mbs; i++) {
1630899cda47SBarry Smith     rvals[0] = bs*(baij->rstartbs + i);
16310ac07820SSatish Balay     for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; }
16320ac07820SSatish Balay     for (j=ai[i]; j<ai[i+1]; j++) {
16330ac07820SSatish Balay       col = baij->garray[aj[j]]*bs;
16340ac07820SSatish Balay       for (k=0; k<bs; k++) {
163593fea6afSBarry Smith         ierr = MatSetValues_MPIBAIJ_MatScalar(B,1,&col,bs,rvals,a,INSERT_VALUES);CHKERRQ(ierr);
16360ac07820SSatish Balay         col++; a += bs;
16370ac07820SSatish Balay       }
16380ac07820SSatish Balay     }
16390ac07820SSatish Balay   }
1640606d414cSSatish Balay   ierr = PetscFree(rvals);CHKERRQ(ierr);
16410ac07820SSatish Balay   ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
16420ac07820SSatish Balay   ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
16430ac07820SSatish Balay 
16447c922b88SBarry Smith   if (matout) {
16450ac07820SSatish Balay     *matout = B;
16460ac07820SSatish Balay   } else {
1647273d9f13SBarry Smith     ierr = MatHeaderCopy(A,B);CHKERRQ(ierr);
16480ac07820SSatish Balay   }
16493a40ed3dSBarry Smith   PetscFunctionReturn(0);
16500ac07820SSatish Balay }
16510e95ebc0SSatish Balay 
16524a2ae208SSatish Balay #undef __FUNCT__
16534a2ae208SSatish Balay #define __FUNCT__ "MatDiagonalScale_MPIBAIJ"
1654dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_MPIBAIJ(Mat mat,Vec ll,Vec rr)
16550e95ebc0SSatish Balay {
165636c4a09eSSatish Balay   Mat_MPIBAIJ    *baij = (Mat_MPIBAIJ*)mat->data;
165736c4a09eSSatish Balay   Mat            a = baij->A,b = baij->B;
1658dfbe8321SBarry Smith   PetscErrorCode ierr;
1659b24ad042SBarry Smith   PetscInt       s1,s2,s3;
16600e95ebc0SSatish Balay 
1661d64ed03dSBarry Smith   PetscFunctionBegin;
166236c4a09eSSatish Balay   ierr = MatGetLocalSize(mat,&s2,&s3);CHKERRQ(ierr);
166336c4a09eSSatish Balay   if (rr) {
166436c4a09eSSatish Balay     ierr = VecGetLocalSize(rr,&s1);CHKERRQ(ierr);
166529bbc08cSBarry Smith     if (s1!=s3) SETERRQ(PETSC_ERR_ARG_SIZ,"right vector non-conforming local size");
166636c4a09eSSatish Balay     /* Overlap communication with computation. */
166736c4a09eSSatish Balay     ierr = VecScatterBegin(rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD,baij->Mvctx);CHKERRQ(ierr);
166836c4a09eSSatish Balay   }
16690e95ebc0SSatish Balay   if (ll) {
16700e95ebc0SSatish Balay     ierr = VecGetLocalSize(ll,&s1);CHKERRQ(ierr);
167129bbc08cSBarry Smith     if (s1!=s2) SETERRQ(PETSC_ERR_ARG_SIZ,"left vector non-conforming local size");
1672a21fb8cbSBarry Smith     ierr = (*b->ops->diagonalscale)(b,ll,PETSC_NULL);CHKERRQ(ierr);
16730e95ebc0SSatish Balay   }
167436c4a09eSSatish Balay   /* scale  the diagonal block */
167536c4a09eSSatish Balay   ierr = (*a->ops->diagonalscale)(a,ll,rr);CHKERRQ(ierr);
167636c4a09eSSatish Balay 
167736c4a09eSSatish Balay   if (rr) {
167836c4a09eSSatish Balay     /* Do a scatter end and then right scale the off-diagonal block */
167936c4a09eSSatish Balay     ierr = VecScatterEnd(rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD,baij->Mvctx);CHKERRQ(ierr);
1680a21fb8cbSBarry Smith     ierr = (*b->ops->diagonalscale)(b,PETSC_NULL,baij->lvec);CHKERRQ(ierr);
168136c4a09eSSatish Balay   }
168236c4a09eSSatish Balay 
16833a40ed3dSBarry Smith   PetscFunctionReturn(0);
16840e95ebc0SSatish Balay }
16850e95ebc0SSatish Balay 
16864a2ae208SSatish Balay #undef __FUNCT__
16874a2ae208SSatish Balay #define __FUNCT__ "MatZeroRows_MPIBAIJ"
1688f4df32b1SMatthew Knepley PetscErrorCode MatZeroRows_MPIBAIJ(Mat A,PetscInt N,const PetscInt rows[],PetscScalar diag)
16890ac07820SSatish Balay {
16900ac07820SSatish Balay   Mat_MPIBAIJ    *l = (Mat_MPIBAIJ*)A->data;
16916849ba73SBarry Smith   PetscErrorCode ierr;
1692b24ad042SBarry Smith   PetscMPIInt    imdex,size = l->size,n,rank = l->rank;
1693899cda47SBarry Smith   PetscInt       i,*owners = A->rmap.range;
1694b24ad042SBarry Smith   PetscInt       *nprocs,j,idx,nsends,row;
1695b24ad042SBarry Smith   PetscInt       nmax,*svalues,*starts,*owner,nrecvs;
16966543fbbaSBarry Smith   PetscInt       *rvalues,tag = A->tag,count,base,slen,*source,lastidx = -1;
1697357c27ecSBarry Smith   PetscInt       *lens,*lrows,*values,rstart_bs=A->rmap.rstart;
16980ac07820SSatish Balay   MPI_Comm       comm = A->comm;
16990ac07820SSatish Balay   MPI_Request    *send_waits,*recv_waits;
17000ac07820SSatish Balay   MPI_Status     recv_status,*send_status;
17016543fbbaSBarry Smith #if defined(PETSC_DEBUG)
17026543fbbaSBarry Smith   PetscTruth     found = PETSC_FALSE;
17036543fbbaSBarry Smith #endif
17040ac07820SSatish Balay 
1705d64ed03dSBarry Smith   PetscFunctionBegin;
17060ac07820SSatish Balay   /*  first count number of contributors to each processor */
1707b24ad042SBarry Smith   ierr  = PetscMalloc(2*size*sizeof(PetscInt),&nprocs);CHKERRQ(ierr);
1708b24ad042SBarry Smith   ierr  = PetscMemzero(nprocs,2*size*sizeof(PetscInt));CHKERRQ(ierr);
1709b24ad042SBarry Smith   ierr  = PetscMalloc((N+1)*sizeof(PetscInt),&owner);CHKERRQ(ierr); /* see note*/
17106543fbbaSBarry Smith   j = 0;
17110ac07820SSatish Balay   for (i=0; i<N; i++) {
17126543fbbaSBarry Smith     if (lastidx > (idx = rows[i])) j = 0;
17136543fbbaSBarry Smith     lastidx = idx;
17146543fbbaSBarry Smith     for (; j<size; j++) {
1715357c27ecSBarry Smith       if (idx >= owners[j] && idx < owners[j+1]) {
17166543fbbaSBarry Smith         nprocs[2*j]++;
17176543fbbaSBarry Smith         nprocs[2*j+1] = 1;
17186543fbbaSBarry Smith         owner[i] = j;
17196543fbbaSBarry Smith #if defined(PETSC_DEBUG)
17206543fbbaSBarry Smith         found = PETSC_TRUE;
17216543fbbaSBarry Smith #endif
17226543fbbaSBarry Smith         break;
17230ac07820SSatish Balay       }
17240ac07820SSatish Balay     }
17256543fbbaSBarry Smith #if defined(PETSC_DEBUG)
172629bbc08cSBarry Smith     if (!found) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Index out of range");
17276543fbbaSBarry Smith     found = PETSC_FALSE;
17286543fbbaSBarry Smith #endif
17290ac07820SSatish Balay   }
1730c1dc657dSBarry Smith   nsends = 0;  for (i=0; i<size; i++) { nsends += nprocs[2*i+1];}
17310ac07820SSatish Balay 
17320ac07820SSatish Balay   /* inform other processors of number of messages and max length*/
1733c1dc657dSBarry Smith   ierr = PetscMaxSum(comm,nprocs,&nmax,&nrecvs);CHKERRQ(ierr);
17340ac07820SSatish Balay 
17350ac07820SSatish Balay   /* post receives:   */
1736b24ad042SBarry Smith   ierr = PetscMalloc((nrecvs+1)*(nmax+1)*sizeof(PetscInt),&rvalues);CHKERRQ(ierr);
1737b0a32e0cSBarry Smith   ierr = PetscMalloc((nrecvs+1)*sizeof(MPI_Request),&recv_waits);CHKERRQ(ierr);
17380ac07820SSatish Balay   for (i=0; i<nrecvs; i++) {
1739b24ad042SBarry Smith     ierr = MPI_Irecv(rvalues+nmax*i,nmax,MPIU_INT,MPI_ANY_SOURCE,tag,comm,recv_waits+i);CHKERRQ(ierr);
17400ac07820SSatish Balay   }
17410ac07820SSatish Balay 
17420ac07820SSatish Balay   /* do sends:
17430ac07820SSatish Balay      1) starts[i] gives the starting index in svalues for stuff going to
17440ac07820SSatish Balay      the ith processor
17450ac07820SSatish Balay   */
1746b24ad042SBarry Smith   ierr = PetscMalloc((N+1)*sizeof(PetscInt),&svalues);CHKERRQ(ierr);
1747b0a32e0cSBarry Smith   ierr = PetscMalloc((nsends+1)*sizeof(MPI_Request),&send_waits);CHKERRQ(ierr);
1748b24ad042SBarry Smith   ierr = PetscMalloc((size+1)*sizeof(PetscInt),&starts);CHKERRQ(ierr);
17490ac07820SSatish Balay   starts[0]  = 0;
1750c1dc657dSBarry Smith   for (i=1; i<size; i++) { starts[i] = starts[i-1] + nprocs[2*i-2];}
17510ac07820SSatish Balay   for (i=0; i<N; i++) {
17520ac07820SSatish Balay     svalues[starts[owner[i]]++] = rows[i];
17530ac07820SSatish Balay   }
17540ac07820SSatish Balay 
17550ac07820SSatish Balay   starts[0] = 0;
1756c1dc657dSBarry Smith   for (i=1; i<size+1; i++) { starts[i] = starts[i-1] + nprocs[2*i-2];}
17570ac07820SSatish Balay   count = 0;
17580ac07820SSatish Balay   for (i=0; i<size; i++) {
1759c1dc657dSBarry Smith     if (nprocs[2*i+1]) {
1760b24ad042SBarry Smith       ierr = MPI_Isend(svalues+starts[i],nprocs[2*i],MPIU_INT,i,tag,comm,send_waits+count++);CHKERRQ(ierr);
17610ac07820SSatish Balay     }
17620ac07820SSatish Balay   }
1763606d414cSSatish Balay   ierr = PetscFree(starts);CHKERRQ(ierr);
17640ac07820SSatish Balay 
1765357c27ecSBarry Smith   base = owners[rank];
17660ac07820SSatish Balay 
17670ac07820SSatish Balay   /*  wait on receives */
1768b24ad042SBarry Smith   ierr   = PetscMalloc(2*(nrecvs+1)*sizeof(PetscInt),&lens);CHKERRQ(ierr);
17690ac07820SSatish Balay   source = lens + nrecvs;
17700ac07820SSatish Balay   count  = nrecvs; slen = 0;
17710ac07820SSatish Balay   while (count) {
1772ca161407SBarry Smith     ierr = MPI_Waitany(nrecvs,recv_waits,&imdex,&recv_status);CHKERRQ(ierr);
17730ac07820SSatish Balay     /* unpack receives into our local space */
1774b24ad042SBarry Smith     ierr = MPI_Get_count(&recv_status,MPIU_INT,&n);CHKERRQ(ierr);
17750ac07820SSatish Balay     source[imdex]  = recv_status.MPI_SOURCE;
17760ac07820SSatish Balay     lens[imdex]    = n;
17770ac07820SSatish Balay     slen          += n;
17780ac07820SSatish Balay     count--;
17790ac07820SSatish Balay   }
1780606d414cSSatish Balay   ierr = PetscFree(recv_waits);CHKERRQ(ierr);
17810ac07820SSatish Balay 
17820ac07820SSatish Balay   /* move the data into the send scatter */
1783b24ad042SBarry Smith   ierr = PetscMalloc((slen+1)*sizeof(PetscInt),&lrows);CHKERRQ(ierr);
17840ac07820SSatish Balay   count = 0;
17850ac07820SSatish Balay   for (i=0; i<nrecvs; i++) {
17860ac07820SSatish Balay     values = rvalues + i*nmax;
17870ac07820SSatish Balay     for (j=0; j<lens[i]; j++) {
17880ac07820SSatish Balay       lrows[count++] = values[j] - base;
17890ac07820SSatish Balay     }
17900ac07820SSatish Balay   }
1791606d414cSSatish Balay   ierr = PetscFree(rvalues);CHKERRQ(ierr);
1792606d414cSSatish Balay   ierr = PetscFree(lens);CHKERRQ(ierr);
1793606d414cSSatish Balay   ierr = PetscFree(owner);CHKERRQ(ierr);
1794606d414cSSatish Balay   ierr = PetscFree(nprocs);CHKERRQ(ierr);
17950ac07820SSatish Balay 
17960ac07820SSatish Balay   /* actually zap the local rows */
179772dacd9aSBarry Smith   /*
179872dacd9aSBarry Smith         Zero the required rows. If the "diagonal block" of the matrix
1799a8c7a070SBarry Smith      is square and the user wishes to set the diagonal we use separate
180072dacd9aSBarry Smith      code so that MatSetValues() is not called for each diagonal allocating
180172dacd9aSBarry Smith      new memory, thus calling lots of mallocs and slowing things down.
180272dacd9aSBarry Smith 
1803f4df32b1SMatthew Knepley        Contributed by: Matthew Knepley
180472dacd9aSBarry Smith   */
18059c957beeSSatish Balay   /* must zero l->B before l->A because the (diag) case below may put values into l->B*/
1806f4df32b1SMatthew Knepley   ierr = MatZeroRows_SeqBAIJ(l->B,slen,lrows,0.0);CHKERRQ(ierr);
1807899cda47SBarry Smith   if ((diag != 0.0) && (l->A->rmap.N == l->A->cmap.N)) {
1808f4df32b1SMatthew Knepley     ierr = MatZeroRows_SeqBAIJ(l->A,slen,lrows,diag);CHKERRQ(ierr);
1809f4df32b1SMatthew Knepley   } else if (diag != 0.0) {
1810f4df32b1SMatthew Knepley     ierr = MatZeroRows_SeqBAIJ(l->A,slen,lrows,0.0);CHKERRQ(ierr);
1811fa46199cSSatish Balay     if (((Mat_SeqBAIJ*)l->A->data)->nonew) {
181229bbc08cSBarry Smith       SETERRQ(PETSC_ERR_SUP,"MatZeroRows() on rectangular matrices cannot be used with the Mat options \n\
1813fa46199cSSatish Balay MAT_NO_NEW_NONZERO_LOCATIONS,MAT_NEW_NONZERO_LOCATION_ERR,MAT_NEW_NONZERO_ALLOCATION_ERR");
18146525c446SSatish Balay     }
1815a07cd24cSSatish Balay     for (i=0; i<slen; i++) {
1816a07cd24cSSatish Balay       row  = lrows[i] + rstart_bs;
1817f4df32b1SMatthew Knepley       ierr = MatSetValues(A,1,&row,1,&row,&diag,INSERT_VALUES);CHKERRQ(ierr);
1818a07cd24cSSatish Balay     }
1819a07cd24cSSatish Balay     ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
1820a07cd24cSSatish Balay     ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
18219c957beeSSatish Balay   } else {
1822f4df32b1SMatthew Knepley     ierr = MatZeroRows_SeqBAIJ(l->A,slen,lrows,0.0);CHKERRQ(ierr);
1823a07cd24cSSatish Balay   }
18249c957beeSSatish Balay 
1825606d414cSSatish Balay   ierr = PetscFree(lrows);CHKERRQ(ierr);
1826a07cd24cSSatish Balay 
18270ac07820SSatish Balay   /* wait on sends */
18280ac07820SSatish Balay   if (nsends) {
182982502324SSatish Balay     ierr = PetscMalloc(nsends*sizeof(MPI_Status),&send_status);CHKERRQ(ierr);
1830ca161407SBarry Smith     ierr = MPI_Waitall(nsends,send_waits,send_status);CHKERRQ(ierr);
1831606d414cSSatish Balay     ierr = PetscFree(send_status);CHKERRQ(ierr);
18320ac07820SSatish Balay   }
1833606d414cSSatish Balay   ierr = PetscFree(send_waits);CHKERRQ(ierr);
1834606d414cSSatish Balay   ierr = PetscFree(svalues);CHKERRQ(ierr);
18350ac07820SSatish Balay 
18363a40ed3dSBarry Smith   PetscFunctionReturn(0);
18370ac07820SSatish Balay }
183872dacd9aSBarry Smith 
18394a2ae208SSatish Balay #undef __FUNCT__
18404a2ae208SSatish Balay #define __FUNCT__ "MatPrintHelp_MPIBAIJ"
1841dfbe8321SBarry Smith PetscErrorCode MatPrintHelp_MPIBAIJ(Mat A)
1842ba4ca20aSSatish Balay {
1843ba4ca20aSSatish Balay   Mat_MPIBAIJ       *a   = (Mat_MPIBAIJ*)A->data;
184425fdafccSSatish Balay   MPI_Comm          comm = A->comm;
1845b24ad042SBarry Smith   static PetscTruth called = PETSC_FALSE;
1846dfbe8321SBarry Smith   PetscErrorCode    ierr;
1847ba4ca20aSSatish Balay 
1848d64ed03dSBarry Smith   PetscFunctionBegin;
18493a40ed3dSBarry Smith   if (!a->rank) {
18503a40ed3dSBarry Smith     ierr = MatPrintHelp_SeqBAIJ(a->A);CHKERRQ(ierr);
185125fdafccSSatish Balay   }
1852b24ad042SBarry Smith   if (called) {PetscFunctionReturn(0);} else called = PETSC_TRUE;
1853d132466eSBarry Smith   ierr = (*PetscHelpPrintf)(comm," Options for MATMPIBAIJ matrix format (the defaults):\n");CHKERRQ(ierr);
1854d132466eSBarry Smith   ierr = (*PetscHelpPrintf)(comm,"  -mat_use_hash_table <factor>: Use hashtable for efficient matrix assembly\n");CHKERRQ(ierr);
18553a40ed3dSBarry Smith   PetscFunctionReturn(0);
1856ba4ca20aSSatish Balay }
18570ac07820SSatish Balay 
18584a2ae208SSatish Balay #undef __FUNCT__
18594a2ae208SSatish Balay #define __FUNCT__ "MatSetUnfactored_MPIBAIJ"
1860dfbe8321SBarry Smith PetscErrorCode MatSetUnfactored_MPIBAIJ(Mat A)
1861bb5a7306SBarry Smith {
1862bb5a7306SBarry Smith   Mat_MPIBAIJ    *a   = (Mat_MPIBAIJ*)A->data;
1863dfbe8321SBarry Smith   PetscErrorCode ierr;
1864d64ed03dSBarry Smith 
1865d64ed03dSBarry Smith   PetscFunctionBegin;
1866bb5a7306SBarry Smith   ierr = MatSetUnfactored(a->A);CHKERRQ(ierr);
18673a40ed3dSBarry Smith   PetscFunctionReturn(0);
1868bb5a7306SBarry Smith }
1869bb5a7306SBarry Smith 
18706849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIBAIJ(Mat,MatDuplicateOption,Mat *);
18710ac07820SSatish Balay 
18724a2ae208SSatish Balay #undef __FUNCT__
18734a2ae208SSatish Balay #define __FUNCT__ "MatEqual_MPIBAIJ"
1874dfbe8321SBarry Smith PetscErrorCode MatEqual_MPIBAIJ(Mat A,Mat B,PetscTruth *flag)
18757fc3c18eSBarry Smith {
18767fc3c18eSBarry Smith   Mat_MPIBAIJ    *matB = (Mat_MPIBAIJ*)B->data,*matA = (Mat_MPIBAIJ*)A->data;
18777fc3c18eSBarry Smith   Mat            a,b,c,d;
18787fc3c18eSBarry Smith   PetscTruth     flg;
1879dfbe8321SBarry Smith   PetscErrorCode ierr;
18807fc3c18eSBarry Smith 
18817fc3c18eSBarry Smith   PetscFunctionBegin;
18827fc3c18eSBarry Smith   a = matA->A; b = matA->B;
18837fc3c18eSBarry Smith   c = matB->A; d = matB->B;
18847fc3c18eSBarry Smith 
18857fc3c18eSBarry Smith   ierr = MatEqual(a,c,&flg);CHKERRQ(ierr);
1886abc0a331SBarry Smith   if (flg) {
18877fc3c18eSBarry Smith     ierr = MatEqual(b,d,&flg);CHKERRQ(ierr);
18887fc3c18eSBarry Smith   }
18897fc3c18eSBarry Smith   ierr = MPI_Allreduce(&flg,flag,1,MPI_INT,MPI_LAND,A->comm);CHKERRQ(ierr);
18907fc3c18eSBarry Smith   PetscFunctionReturn(0);
18917fc3c18eSBarry Smith }
18927fc3c18eSBarry Smith 
18933c896bc6SHong Zhang #undef __FUNCT__
18943c896bc6SHong Zhang #define __FUNCT__ "MatCopy_MPIBAIJ"
18953c896bc6SHong Zhang PetscErrorCode MatCopy_MPIBAIJ(Mat A,Mat B,MatStructure str)
18963c896bc6SHong Zhang {
18973c896bc6SHong Zhang   PetscErrorCode ierr;
18983c896bc6SHong Zhang   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ *)A->data;
18993c896bc6SHong Zhang   Mat_MPIBAIJ    *b = (Mat_MPIBAIJ *)B->data;
19003c896bc6SHong Zhang 
19013c896bc6SHong Zhang   PetscFunctionBegin;
19023c896bc6SHong Zhang   /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */
19033c896bc6SHong Zhang   if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) {
19043c896bc6SHong Zhang     ierr = MatCopy_Basic(A,B,str);CHKERRQ(ierr);
19053c896bc6SHong Zhang   } else {
19063c896bc6SHong Zhang     ierr = MatCopy(a->A,b->A,str);CHKERRQ(ierr);
19073c896bc6SHong Zhang     ierr = MatCopy(a->B,b->B,str);CHKERRQ(ierr);
19083c896bc6SHong Zhang   }
19093c896bc6SHong Zhang   PetscFunctionReturn(0);
19103c896bc6SHong Zhang }
1911273d9f13SBarry Smith 
19124a2ae208SSatish Balay #undef __FUNCT__
19134a2ae208SSatish Balay #define __FUNCT__ "MatSetUpPreallocation_MPIBAIJ"
1914dfbe8321SBarry Smith PetscErrorCode MatSetUpPreallocation_MPIBAIJ(Mat A)
1915273d9f13SBarry Smith {
1916dfbe8321SBarry Smith   PetscErrorCode ierr;
1917273d9f13SBarry Smith 
1918273d9f13SBarry Smith   PetscFunctionBegin;
19197edd0491SSatish Balay   ierr =  MatMPIBAIJSetPreallocation(A,PetscMax(A->rmap.bs,1),PETSC_DEFAULT,0,PETSC_DEFAULT,0);CHKERRQ(ierr);
1920273d9f13SBarry Smith   PetscFunctionReturn(0);
1921273d9f13SBarry Smith }
1922273d9f13SBarry Smith 
19234fe895cdSHong Zhang #include "petscblaslapack.h"
19244fe895cdSHong Zhang #undef __FUNCT__
19254fe895cdSHong Zhang #define __FUNCT__ "MatAXPY_MPIBAIJ"
19264fe895cdSHong Zhang PetscErrorCode MatAXPY_MPIBAIJ(Mat Y,PetscScalar a,Mat X,MatStructure str)
19274fe895cdSHong Zhang {
19284fe895cdSHong Zhang   PetscErrorCode ierr;
19294fe895cdSHong Zhang   Mat_MPIBAIJ    *xx=(Mat_MPIBAIJ *)X->data,*yy=(Mat_MPIBAIJ *)Y->data;
19304fe895cdSHong Zhang   PetscBLASInt   bnz,one=1;
19314fe895cdSHong Zhang   Mat_SeqBAIJ    *x,*y;
19324fe895cdSHong Zhang 
19334fe895cdSHong Zhang   PetscFunctionBegin;
19344fe895cdSHong Zhang   if (str == SAME_NONZERO_PATTERN) {
19354fe895cdSHong Zhang     PetscScalar alpha = a;
19364fe895cdSHong Zhang     x = (Mat_SeqBAIJ *)xx->A->data;
19374fe895cdSHong Zhang     y = (Mat_SeqBAIJ *)yy->A->data;
19384fe895cdSHong Zhang     bnz = (PetscBLASInt)x->nz;
19394fe895cdSHong Zhang     BLASaxpy_(&bnz,&alpha,x->a,&one,y->a,&one);
19404fe895cdSHong Zhang     x = (Mat_SeqBAIJ *)xx->B->data;
19414fe895cdSHong Zhang     y = (Mat_SeqBAIJ *)yy->B->data;
19424fe895cdSHong Zhang     bnz = (PetscBLASInt)x->nz;
19434fe895cdSHong Zhang     BLASaxpy_(&bnz,&alpha,x->a,&one,y->a,&one);
19444fe895cdSHong Zhang   } else {
19454fe895cdSHong Zhang     ierr = MatAXPY_Basic(Y,a,X,str);CHKERRQ(ierr);
19464fe895cdSHong Zhang   }
19474fe895cdSHong Zhang   PetscFunctionReturn(0);
19484fe895cdSHong Zhang }
19494fe895cdSHong Zhang 
195099cafbc1SBarry Smith #undef __FUNCT__
195199cafbc1SBarry Smith #define __FUNCT__ "MatRealPart_MPIBAIJ"
195299cafbc1SBarry Smith PetscErrorCode MatRealPart_MPIBAIJ(Mat A)
195399cafbc1SBarry Smith {
195499cafbc1SBarry Smith   Mat_MPIBAIJ   *a = (Mat_MPIBAIJ*)A->data;
195599cafbc1SBarry Smith   PetscErrorCode ierr;
195699cafbc1SBarry Smith 
195799cafbc1SBarry Smith   PetscFunctionBegin;
195899cafbc1SBarry Smith   ierr = MatRealPart(a->A);CHKERRQ(ierr);
195999cafbc1SBarry Smith   ierr = MatRealPart(a->B);CHKERRQ(ierr);
196099cafbc1SBarry Smith   PetscFunctionReturn(0);
196199cafbc1SBarry Smith }
196299cafbc1SBarry Smith 
196399cafbc1SBarry Smith #undef __FUNCT__
196499cafbc1SBarry Smith #define __FUNCT__ "MatImaginaryPart_MPIBAIJ"
196599cafbc1SBarry Smith PetscErrorCode MatImaginaryPart_MPIBAIJ(Mat A)
196699cafbc1SBarry Smith {
196799cafbc1SBarry Smith   Mat_MPIBAIJ   *a = (Mat_MPIBAIJ*)A->data;
196899cafbc1SBarry Smith   PetscErrorCode ierr;
196999cafbc1SBarry Smith 
197099cafbc1SBarry Smith   PetscFunctionBegin;
197199cafbc1SBarry Smith   ierr = MatImaginaryPart(a->A);CHKERRQ(ierr);
197299cafbc1SBarry Smith   ierr = MatImaginaryPart(a->B);CHKERRQ(ierr);
197399cafbc1SBarry Smith   PetscFunctionReturn(0);
197499cafbc1SBarry Smith }
197599cafbc1SBarry Smith 
197679bdfe76SSatish Balay /* -------------------------------------------------------------------*/
1977cc2dc46cSBarry Smith static struct _MatOps MatOps_Values = {
1978cc2dc46cSBarry Smith        MatSetValues_MPIBAIJ,
1979cc2dc46cSBarry Smith        MatGetRow_MPIBAIJ,
1980cc2dc46cSBarry Smith        MatRestoreRow_MPIBAIJ,
1981cc2dc46cSBarry Smith        MatMult_MPIBAIJ,
198297304618SKris Buschelman /* 4*/ MatMultAdd_MPIBAIJ,
19837c922b88SBarry Smith        MatMultTranspose_MPIBAIJ,
19847c922b88SBarry Smith        MatMultTransposeAdd_MPIBAIJ,
1985cc2dc46cSBarry Smith        0,
1986cc2dc46cSBarry Smith        0,
1987cc2dc46cSBarry Smith        0,
198897304618SKris Buschelman /*10*/ 0,
1989cc2dc46cSBarry Smith        0,
1990cc2dc46cSBarry Smith        0,
1991cc2dc46cSBarry Smith        0,
1992cc2dc46cSBarry Smith        MatTranspose_MPIBAIJ,
199397304618SKris Buschelman /*15*/ MatGetInfo_MPIBAIJ,
19947fc3c18eSBarry Smith        MatEqual_MPIBAIJ,
1995cc2dc46cSBarry Smith        MatGetDiagonal_MPIBAIJ,
1996cc2dc46cSBarry Smith        MatDiagonalScale_MPIBAIJ,
1997cc2dc46cSBarry Smith        MatNorm_MPIBAIJ,
199897304618SKris Buschelman /*20*/ MatAssemblyBegin_MPIBAIJ,
1999cc2dc46cSBarry Smith        MatAssemblyEnd_MPIBAIJ,
2000cc2dc46cSBarry Smith        0,
2001cc2dc46cSBarry Smith        MatSetOption_MPIBAIJ,
2002cc2dc46cSBarry Smith        MatZeroEntries_MPIBAIJ,
200397304618SKris Buschelman /*25*/ MatZeroRows_MPIBAIJ,
2004cc2dc46cSBarry Smith        0,
2005cc2dc46cSBarry Smith        0,
2006cc2dc46cSBarry Smith        0,
2007cc2dc46cSBarry Smith        0,
200897304618SKris Buschelman /*30*/ MatSetUpPreallocation_MPIBAIJ,
2009273d9f13SBarry Smith        0,
2010cc2dc46cSBarry Smith        0,
2011cc2dc46cSBarry Smith        0,
2012cc2dc46cSBarry Smith        0,
201397304618SKris Buschelman /*35*/ MatDuplicate_MPIBAIJ,
2014cc2dc46cSBarry Smith        0,
2015cc2dc46cSBarry Smith        0,
2016cc2dc46cSBarry Smith        0,
2017cc2dc46cSBarry Smith        0,
20184fe895cdSHong Zhang /*40*/ MatAXPY_MPIBAIJ,
2019cc2dc46cSBarry Smith        MatGetSubMatrices_MPIBAIJ,
2020cc2dc46cSBarry Smith        MatIncreaseOverlap_MPIBAIJ,
2021cc2dc46cSBarry Smith        MatGetValues_MPIBAIJ,
20223c896bc6SHong Zhang        MatCopy_MPIBAIJ,
202397304618SKris Buschelman /*45*/ MatPrintHelp_MPIBAIJ,
2024cc2dc46cSBarry Smith        MatScale_MPIBAIJ,
2025cc2dc46cSBarry Smith        0,
2026cc2dc46cSBarry Smith        0,
2027cc2dc46cSBarry Smith        0,
2028521d7252SBarry Smith /*50*/ 0,
2029cc2dc46cSBarry Smith        0,
2030cc2dc46cSBarry Smith        0,
2031cc2dc46cSBarry Smith        0,
2032cc2dc46cSBarry Smith        0,
203397304618SKris Buschelman /*55*/ 0,
2034cc2dc46cSBarry Smith        0,
2035cc2dc46cSBarry Smith        MatSetUnfactored_MPIBAIJ,
2036cc2dc46cSBarry Smith        0,
2037cc2dc46cSBarry Smith        MatSetValuesBlocked_MPIBAIJ,
203897304618SKris Buschelman /*60*/ 0,
2039f14a1c24SBarry Smith        MatDestroy_MPIBAIJ,
2040f14a1c24SBarry Smith        MatView_MPIBAIJ,
2041357abbc8SBarry Smith        0,
20427843d17aSBarry Smith        0,
204397304618SKris Buschelman /*65*/ 0,
20447843d17aSBarry Smith        0,
20457843d17aSBarry Smith        0,
20467843d17aSBarry Smith        0,
20477843d17aSBarry Smith        0,
204897304618SKris Buschelman /*70*/ MatGetRowMax_MPIBAIJ,
20497843d17aSBarry Smith        0,
205097304618SKris Buschelman        0,
205197304618SKris Buschelman        0,
205297304618SKris Buschelman        0,
205397304618SKris Buschelman /*75*/ 0,
205497304618SKris Buschelman        0,
205597304618SKris Buschelman        0,
205697304618SKris Buschelman        0,
205797304618SKris Buschelman        0,
205897304618SKris Buschelman /*80*/ 0,
205997304618SKris Buschelman        0,
206097304618SKris Buschelman        0,
206197304618SKris Buschelman        0,
2062865e5f61SKris Buschelman        MatLoad_MPIBAIJ,
2063865e5f61SKris Buschelman /*85*/ 0,
2064865e5f61SKris Buschelman        0,
2065865e5f61SKris Buschelman        0,
2066865e5f61SKris Buschelman        0,
2067865e5f61SKris Buschelman        0,
2068865e5f61SKris Buschelman /*90*/ 0,
2069865e5f61SKris Buschelman        0,
2070865e5f61SKris Buschelman        0,
2071865e5f61SKris Buschelman        0,
2072865e5f61SKris Buschelman        0,
2073865e5f61SKris Buschelman /*95*/ 0,
2074865e5f61SKris Buschelman        0,
2075865e5f61SKris Buschelman        0,
207699cafbc1SBarry Smith        0,
207799cafbc1SBarry Smith        0,
207899cafbc1SBarry Smith /*100*/0,
207999cafbc1SBarry Smith        0,
208099cafbc1SBarry Smith        0,
208199cafbc1SBarry Smith        0,
208299cafbc1SBarry Smith        0,
208399cafbc1SBarry Smith /*105*/0,
208499cafbc1SBarry Smith        MatRealPart_MPIBAIJ,
208599cafbc1SBarry Smith        MatImaginaryPart_MPIBAIJ};
208679bdfe76SSatish Balay 
20875ef9f2a5SBarry Smith 
2088e18c124aSSatish Balay EXTERN_C_BEGIN
20894a2ae208SSatish Balay #undef __FUNCT__
20904a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonalBlock_MPIBAIJ"
2091be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatGetDiagonalBlock_MPIBAIJ(Mat A,PetscTruth *iscopy,MatReuse reuse,Mat *a)
20925ef9f2a5SBarry Smith {
20935ef9f2a5SBarry Smith   PetscFunctionBegin;
20945ef9f2a5SBarry Smith   *a      = ((Mat_MPIBAIJ *)A->data)->A;
20955ef9f2a5SBarry Smith   *iscopy = PETSC_FALSE;
20965ef9f2a5SBarry Smith   PetscFunctionReturn(0);
20975ef9f2a5SBarry Smith }
2098e18c124aSSatish Balay EXTERN_C_END
209979bdfe76SSatish Balay 
2100273d9f13SBarry Smith EXTERN_C_BEGIN
2101f69a0ea3SMatthew Knepley extern PetscErrorCode PETSCMAT_DLLEXPORT MatConvert_MPIBAIJ_MPISBAIJ(Mat, MatType,MatReuse,Mat*);
2102d94109b8SHong Zhang EXTERN_C_END
2103d94109b8SHong Zhang 
2104aac34f13SBarry Smith #undef __FUNCT__
2105aac34f13SBarry Smith #define __FUNCT__ "MatMPIBAIJSetPreallocationCSR_MPIBAIJ"
2106aac34f13SBarry Smith PetscErrorCode MatMPIBAIJSetPreallocationCSR_MPIBAIJ(Mat B,PetscInt bs,const PetscInt I[],const PetscInt J[],const PetscScalar v[])
2107aac34f13SBarry Smith {
2108899cda47SBarry Smith   Mat_MPIBAIJ    *baij = (Mat_MPIBAIJ*)B->data;
2109899cda47SBarry Smith   PetscInt       m = B->rmap.n/bs,cstart = baij->cstartbs, cend = baij->cendbs,j,nnz,i,d;
2110899cda47SBarry Smith   PetscInt       *d_nnz,*o_nnz,nnz_max = 0,rstart = baij->rstartbs,ii;
2111aac34f13SBarry Smith   const PetscInt *JJ;
2112aac34f13SBarry Smith   PetscScalar    *values;
2113aac34f13SBarry Smith   PetscErrorCode ierr;
2114aac34f13SBarry Smith 
2115aac34f13SBarry Smith   PetscFunctionBegin;
2116aac34f13SBarry Smith #if defined(PETSC_OPT_g)
2117aac34f13SBarry Smith   if (I[0]) SETERRQ1(PETSC_ERR_ARG_RANGE,"I[0] must be 0 it is %D",I[0]);
2118aac34f13SBarry Smith #endif
2119aac34f13SBarry Smith   ierr  = PetscMalloc((2*m+1)*sizeof(PetscInt),&d_nnz);CHKERRQ(ierr);
2120aac34f13SBarry Smith   o_nnz = d_nnz + m;
2121aac34f13SBarry Smith 
2122aac34f13SBarry Smith   for (i=0; i<m; i++) {
2123aac34f13SBarry Smith     nnz     = I[i+1]- I[i];
2124aac34f13SBarry Smith     JJ      = J + I[i];
2125aac34f13SBarry Smith     nnz_max = PetscMax(nnz_max,nnz);
2126aac34f13SBarry Smith #if defined(PETSC_OPT_g)
2127aac34f13SBarry Smith     if (nnz < 0) SETERRQ1(PETSC_ERR_ARG_RANGE,"Local row %D has a negative %D number of columns",i,nnz);
2128aac34f13SBarry Smith #endif
2129aac34f13SBarry Smith     for (j=0; j<nnz; j++) {
2130aac34f13SBarry Smith       if (*JJ >= cstart) break;
2131aac34f13SBarry Smith       JJ++;
2132aac34f13SBarry Smith     }
2133aac34f13SBarry Smith     d = 0;
2134aac34f13SBarry Smith     for (; j<nnz; j++) {
2135aac34f13SBarry Smith       if (*JJ++ >= cend) break;
2136aac34f13SBarry Smith       d++;
2137aac34f13SBarry Smith     }
2138aac34f13SBarry Smith     d_nnz[i] = d;
2139aac34f13SBarry Smith     o_nnz[i] = nnz - d;
2140aac34f13SBarry Smith   }
2141aac34f13SBarry Smith   ierr = MatMPIBAIJSetPreallocation(B,bs,0,d_nnz,0,o_nnz);CHKERRQ(ierr);
2142aac34f13SBarry Smith   ierr = PetscFree(d_nnz);CHKERRQ(ierr);
2143aac34f13SBarry Smith 
2144aac34f13SBarry Smith   if (v) values = (PetscScalar*)v;
2145aac34f13SBarry Smith   else {
2146aac34f13SBarry Smith     ierr = PetscMalloc(bs*bs*(nnz_max+1)*sizeof(PetscScalar),&values);CHKERRQ(ierr);
2147aac34f13SBarry Smith     ierr = PetscMemzero(values,bs*bs*nnz_max*sizeof(PetscScalar));CHKERRQ(ierr);
2148aac34f13SBarry Smith   }
2149aac34f13SBarry Smith 
2150aac34f13SBarry Smith   ierr = MatSetOption(B,MAT_COLUMNS_SORTED);CHKERRQ(ierr);
2151aac34f13SBarry Smith   for (i=0; i<m; i++) {
2152aac34f13SBarry Smith     ii   = i + rstart;
2153aac34f13SBarry Smith     nnz  = I[i+1]- I[i];
21543f01e284SBarry Smith     ierr = MatSetValuesBlocked_MPIBAIJ(B,1,&ii,nnz,J+I[i],values+(v ? I[i] : 0),INSERT_VALUES);CHKERRQ(ierr);
2155aac34f13SBarry Smith   }
2156aac34f13SBarry Smith   ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
2157aac34f13SBarry Smith   ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
2158aac34f13SBarry Smith   ierr = MatSetOption(B,MAT_COLUMNS_UNSORTED);CHKERRQ(ierr);
2159aac34f13SBarry Smith 
2160aac34f13SBarry Smith   if (!v) {
2161aac34f13SBarry Smith     ierr = PetscFree(values);CHKERRQ(ierr);
2162aac34f13SBarry Smith   }
2163aac34f13SBarry Smith   PetscFunctionReturn(0);
2164aac34f13SBarry Smith }
2165aac34f13SBarry Smith 
2166aac34f13SBarry Smith #undef __FUNCT__
2167aac34f13SBarry Smith #define __FUNCT__ "MatMPIBAIJSetPreallocationCSR"
2168aac34f13SBarry Smith /*@C
2169aac34f13SBarry Smith    MatMPIBAIJSetPreallocationCSR - Allocates memory for a sparse parallel matrix in AIJ format
2170aac34f13SBarry Smith    (the default parallel PETSc format).
2171aac34f13SBarry Smith 
2172aac34f13SBarry Smith    Collective on MPI_Comm
2173aac34f13SBarry Smith 
2174aac34f13SBarry Smith    Input Parameters:
2175aac34f13SBarry Smith +  A - the matrix
2176aac34f13SBarry Smith .  i - the indices into j for the start of each local row (starts with zero)
2177aac34f13SBarry Smith .  j - the column indices for each local row (starts with zero) these must be sorted for each row
2178aac34f13SBarry Smith -  v - optional values in the matrix
2179aac34f13SBarry Smith 
2180aac34f13SBarry Smith    Level: developer
2181aac34f13SBarry Smith 
2182aac34f13SBarry Smith .keywords: matrix, aij, compressed row, sparse, parallel
2183aac34f13SBarry Smith 
2184aac34f13SBarry Smith .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatMPIBAIJSetPreallocation(), MatCreateMPIAIJ(), MPIAIJ
2185aac34f13SBarry Smith @*/
2186be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPIBAIJSetPreallocationCSR(Mat B,PetscInt bs,const PetscInt i[],const PetscInt j[], const PetscScalar v[])
2187aac34f13SBarry Smith {
2188aac34f13SBarry Smith   PetscErrorCode ierr,(*f)(Mat,PetscInt,const PetscInt[],const PetscInt[],const PetscScalar[]);
2189aac34f13SBarry Smith 
2190aac34f13SBarry Smith   PetscFunctionBegin;
2191aac34f13SBarry Smith   ierr = PetscObjectQueryFunction((PetscObject)B,"MatMPIBAIJSetPreallocationCSR_C",(void (**)(void))&f);CHKERRQ(ierr);
2192aac34f13SBarry Smith   if (f) {
2193aac34f13SBarry Smith     ierr = (*f)(B,bs,i,j,v);CHKERRQ(ierr);
2194aac34f13SBarry Smith   }
2195aac34f13SBarry Smith   PetscFunctionReturn(0);
2196aac34f13SBarry Smith }
2197aac34f13SBarry Smith 
2198d94109b8SHong Zhang EXTERN_C_BEGIN
21994a2ae208SSatish Balay #undef __FUNCT__
2200a23d5eceSKris Buschelman #define __FUNCT__ "MatMPIBAIJSetPreallocation_MPIBAIJ"
2201be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPIBAIJSetPreallocation_MPIBAIJ(Mat B,PetscInt bs,PetscInt d_nz,PetscInt *d_nnz,PetscInt o_nz,PetscInt *o_nnz)
2202a23d5eceSKris Buschelman {
2203a23d5eceSKris Buschelman   Mat_MPIBAIJ    *b;
2204dfbe8321SBarry Smith   PetscErrorCode ierr;
2205b24ad042SBarry Smith   PetscInt       i;
2206a23d5eceSKris Buschelman 
2207a23d5eceSKris Buschelman   PetscFunctionBegin;
2208a23d5eceSKris Buschelman   B->preallocated = PETSC_TRUE;
2209a23d5eceSKris Buschelman   ierr = PetscOptionsGetInt(PETSC_NULL,"-mat_block_size",&bs,PETSC_NULL);CHKERRQ(ierr);
2210a23d5eceSKris Buschelman 
2211a23d5eceSKris Buschelman   if (bs < 1) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Invalid block size specified, must be positive");
2212a23d5eceSKris Buschelman   if (d_nz == PETSC_DEFAULT || d_nz == PETSC_DECIDE) d_nz = 5;
2213a23d5eceSKris Buschelman   if (o_nz == PETSC_DEFAULT || o_nz == PETSC_DECIDE) o_nz = 2;
221477431f27SBarry Smith   if (d_nz < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"d_nz cannot be less than 0: value %D",d_nz);
221577431f27SBarry Smith   if (o_nz < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"o_nz cannot be less than 0: value %D",o_nz);
2216899cda47SBarry Smith 
2217899cda47SBarry Smith   B->rmap.bs  = bs;
2218899cda47SBarry Smith   B->cmap.bs  = bs;
2219899cda47SBarry Smith   ierr = PetscMapInitialize(B->comm,&B->rmap);CHKERRQ(ierr);
2220899cda47SBarry Smith   ierr = PetscMapInitialize(B->comm,&B->cmap);CHKERRQ(ierr);
2221899cda47SBarry Smith 
2222a23d5eceSKris Buschelman   if (d_nnz) {
2223899cda47SBarry Smith     for (i=0; i<B->rmap.n/bs; i++) {
222477431f27SBarry Smith       if (d_nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"d_nnz cannot be less than -1: local row %D value %D",i,d_nnz[i]);
2225a23d5eceSKris Buschelman     }
2226a23d5eceSKris Buschelman   }
2227a23d5eceSKris Buschelman   if (o_nnz) {
2228899cda47SBarry Smith     for (i=0; i<B->rmap.n/bs; i++) {
222977431f27SBarry Smith       if (o_nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"o_nnz cannot be less than -1: local row %D value %D",i,o_nnz[i]);
2230a23d5eceSKris Buschelman     }
2231a23d5eceSKris Buschelman   }
2232a23d5eceSKris Buschelman 
2233a23d5eceSKris Buschelman   b = (Mat_MPIBAIJ*)B->data;
2234a23d5eceSKris Buschelman   b->bs2 = bs*bs;
2235899cda47SBarry Smith   b->mbs = B->rmap.n/bs;
2236899cda47SBarry Smith   b->nbs = B->cmap.n/bs;
2237899cda47SBarry Smith   b->Mbs = B->rmap.N/bs;
2238899cda47SBarry Smith   b->Nbs = B->cmap.N/bs;
2239a23d5eceSKris Buschelman 
2240a23d5eceSKris Buschelman   for (i=0; i<=b->size; i++) {
2241899cda47SBarry Smith     b->rangebs[i] = B->rmap.range[i]/bs;
2242a23d5eceSKris Buschelman   }
2243899cda47SBarry Smith   b->rstartbs = B->rmap.rstart/bs;
2244899cda47SBarry Smith   b->rendbs   = B->rmap.rend/bs;
2245899cda47SBarry Smith   b->cstartbs = B->cmap.rstart/bs;
2246899cda47SBarry Smith   b->cendbs   = B->cmap.rend/bs;
2247a23d5eceSKris Buschelman 
2248f69a0ea3SMatthew Knepley   ierr = MatCreate(PETSC_COMM_SELF,&b->A);CHKERRQ(ierr);
2249899cda47SBarry Smith   ierr = MatSetSizes(b->A,B->rmap.n,B->cmap.n,B->rmap.n,B->cmap.n);CHKERRQ(ierr);
22509c097c71SKris Buschelman   ierr = MatSetType(b->A,MATSEQBAIJ);CHKERRQ(ierr);
2251c60e587dSKris Buschelman   ierr = MatSeqBAIJSetPreallocation(b->A,bs,d_nz,d_nnz);CHKERRQ(ierr);
225252e6d16bSBarry Smith   ierr = PetscLogObjectParent(B,b->A);CHKERRQ(ierr);
2253f69a0ea3SMatthew Knepley   ierr = MatCreate(PETSC_COMM_SELF,&b->B);CHKERRQ(ierr);
2254899cda47SBarry Smith   ierr = MatSetSizes(b->B,B->rmap.n,B->cmap.N,B->rmap.n,B->cmap.N);CHKERRQ(ierr);
22559c097c71SKris Buschelman   ierr = MatSetType(b->B,MATSEQBAIJ);CHKERRQ(ierr);
2256c60e587dSKris Buschelman   ierr = MatSeqBAIJSetPreallocation(b->B,bs,o_nz,o_nnz);CHKERRQ(ierr);
225752e6d16bSBarry Smith   ierr = PetscLogObjectParent(B,b->B);CHKERRQ(ierr);
2258c60e587dSKris Buschelman 
2259a23d5eceSKris Buschelman   ierr = MatStashCreate_Private(B->comm,bs,&B->bstash);CHKERRQ(ierr);
2260a23d5eceSKris Buschelman 
2261a23d5eceSKris Buschelman   PetscFunctionReturn(0);
2262a23d5eceSKris Buschelman }
2263a23d5eceSKris Buschelman EXTERN_C_END
2264a23d5eceSKris Buschelman 
2265a23d5eceSKris Buschelman EXTERN_C_BEGIN
2266be1d678aSKris Buschelman EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatDiagonalScaleLocal_MPIBAIJ(Mat,Vec);
2267be1d678aSKris Buschelman EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatSetHashTableFactor_MPIBAIJ(Mat,PetscReal);
226892b32695SKris Buschelman EXTERN_C_END
22695bf65638SKris Buschelman 
22700bad9183SKris Buschelman /*MC
2271fafad747SKris Buschelman    MATMPIBAIJ - MATMPIBAIJ = "mpibaij" - A matrix type to be used for distributed block sparse matrices.
22720bad9183SKris Buschelman 
22730bad9183SKris Buschelman    Options Database Keys:
22740bad9183SKris Buschelman . -mat_type mpibaij - sets the matrix type to "mpibaij" during a call to MatSetFromOptions()
22750bad9183SKris Buschelman 
22760bad9183SKris Buschelman   Level: beginner
22770bad9183SKris Buschelman 
22780bad9183SKris Buschelman .seealso: MatCreateMPIBAIJ
22790bad9183SKris Buschelman M*/
22800bad9183SKris Buschelman 
228192b32695SKris Buschelman EXTERN_C_BEGIN
2282a23d5eceSKris Buschelman #undef __FUNCT__
22834a2ae208SSatish Balay #define __FUNCT__ "MatCreate_MPIBAIJ"
2284be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreate_MPIBAIJ(Mat B)
2285273d9f13SBarry Smith {
2286273d9f13SBarry Smith   Mat_MPIBAIJ    *b;
2287dfbe8321SBarry Smith   PetscErrorCode ierr;
2288273d9f13SBarry Smith   PetscTruth     flg;
2289273d9f13SBarry Smith 
2290273d9f13SBarry Smith   PetscFunctionBegin;
229182502324SSatish Balay   ierr = PetscNew(Mat_MPIBAIJ,&b);CHKERRQ(ierr);
229282502324SSatish Balay   B->data = (void*)b;
229382502324SSatish Balay 
2294085a36d4SBarry Smith 
2295273d9f13SBarry Smith   ierr    = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr);
2296273d9f13SBarry Smith   B->mapping    = 0;
2297273d9f13SBarry Smith   B->factor     = 0;
2298273d9f13SBarry Smith   B->assembled  = PETSC_FALSE;
2299273d9f13SBarry Smith 
2300273d9f13SBarry Smith   B->insertmode = NOT_SET_VALUES;
2301273d9f13SBarry Smith   ierr = MPI_Comm_rank(B->comm,&b->rank);CHKERRQ(ierr);
2302273d9f13SBarry Smith   ierr = MPI_Comm_size(B->comm,&b->size);CHKERRQ(ierr);
2303273d9f13SBarry Smith 
2304273d9f13SBarry Smith   /* build local table of row and column ownerships */
2305899cda47SBarry Smith   ierr = PetscMalloc((b->size+1)*sizeof(PetscInt),&b->rangebs);CHKERRQ(ierr);
2306273d9f13SBarry Smith 
2307273d9f13SBarry Smith   /* build cache for off array entries formed */
2308273d9f13SBarry Smith   ierr = MatStashCreate_Private(B->comm,1,&B->stash);CHKERRQ(ierr);
2309273d9f13SBarry Smith   b->donotstash  = PETSC_FALSE;
2310273d9f13SBarry Smith   b->colmap      = PETSC_NULL;
2311273d9f13SBarry Smith   b->garray      = PETSC_NULL;
2312273d9f13SBarry Smith   b->roworiented = PETSC_TRUE;
2313273d9f13SBarry Smith 
2314cfce73b9SSatish Balay #if defined(PETSC_USE_MAT_SINGLE)
2315273d9f13SBarry Smith   /* stuff for MatSetValues_XXX in single precision */
231664a35ccbSBarry Smith   b->setvalueslen     = 0;
2317273d9f13SBarry Smith   b->setvaluescopy    = PETSC_NULL;
2318273d9f13SBarry Smith #endif
2319273d9f13SBarry Smith 
2320273d9f13SBarry Smith   /* stuff used in block assembly */
2321273d9f13SBarry Smith   b->barray       = 0;
2322273d9f13SBarry Smith 
2323273d9f13SBarry Smith   /* stuff used for matrix vector multiply */
2324273d9f13SBarry Smith   b->lvec         = 0;
2325273d9f13SBarry Smith   b->Mvctx        = 0;
2326273d9f13SBarry Smith 
2327273d9f13SBarry Smith   /* stuff for MatGetRow() */
2328273d9f13SBarry Smith   b->rowindices   = 0;
2329273d9f13SBarry Smith   b->rowvalues    = 0;
2330273d9f13SBarry Smith   b->getrowactive = PETSC_FALSE;
2331273d9f13SBarry Smith 
2332273d9f13SBarry Smith   /* hash table stuff */
2333273d9f13SBarry Smith   b->ht           = 0;
2334273d9f13SBarry Smith   b->hd           = 0;
2335273d9f13SBarry Smith   b->ht_size      = 0;
2336273d9f13SBarry Smith   b->ht_flag      = PETSC_FALSE;
2337273d9f13SBarry Smith   b->ht_fact      = 0;
2338273d9f13SBarry Smith   b->ht_total_ct  = 0;
2339273d9f13SBarry Smith   b->ht_insert_ct = 0;
2340273d9f13SBarry Smith 
2341b0a32e0cSBarry Smith   ierr = PetscOptionsHasName(PETSC_NULL,"-mat_use_hash_table",&flg);CHKERRQ(ierr);
2342273d9f13SBarry Smith   if (flg) {
2343f6275e2eSBarry Smith     PetscReal fact = 1.39;
2344273d9f13SBarry Smith     ierr = MatSetOption(B,MAT_USE_HASH_TABLE);CHKERRQ(ierr);
234587828ca2SBarry Smith     ierr = PetscOptionsGetReal(PETSC_NULL,"-mat_use_hash_table",&fact,PETSC_NULL);CHKERRQ(ierr);
2346273d9f13SBarry Smith     if (fact <= 1.0) fact = 1.39;
2347273d9f13SBarry Smith     ierr = MatMPIBAIJSetHashTableFactor(B,fact);CHKERRQ(ierr);
2348ae15b995SBarry Smith     ierr = PetscInfo1(0,"Hash table Factor used %5.2f\n",fact);CHKERRQ(ierr);
2349273d9f13SBarry Smith   }
2350273d9f13SBarry Smith   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatStoreValues_C",
2351273d9f13SBarry Smith                                      "MatStoreValues_MPIBAIJ",
2352273d9f13SBarry Smith                                      MatStoreValues_MPIBAIJ);CHKERRQ(ierr);
2353273d9f13SBarry Smith   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatRetrieveValues_C",
2354273d9f13SBarry Smith                                      "MatRetrieveValues_MPIBAIJ",
2355273d9f13SBarry Smith                                      MatRetrieveValues_MPIBAIJ);CHKERRQ(ierr);
2356273d9f13SBarry Smith   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetDiagonalBlock_C",
2357273d9f13SBarry Smith                                      "MatGetDiagonalBlock_MPIBAIJ",
2358273d9f13SBarry Smith                                      MatGetDiagonalBlock_MPIBAIJ);CHKERRQ(ierr);
2359a23d5eceSKris Buschelman   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatMPIBAIJSetPreallocation_C",
2360a23d5eceSKris Buschelman                                      "MatMPIBAIJSetPreallocation_MPIBAIJ",
2361a23d5eceSKris Buschelman                                      MatMPIBAIJSetPreallocation_MPIBAIJ);CHKERRQ(ierr);
2362aac34f13SBarry Smith   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatMPIBAIJSetPreallocationCSR_C",
2363aac34f13SBarry Smith 				     "MatMPIBAIJSetPreallocationCSR_MPIAIJ",
2364aac34f13SBarry Smith 				     MatMPIBAIJSetPreallocationCSR_MPIBAIJ);CHKERRQ(ierr);
236592b32695SKris Buschelman   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatDiagonalScaleLocal_C",
236692b32695SKris Buschelman                                      "MatDiagonalScaleLocal_MPIBAIJ",
236792b32695SKris Buschelman                                      MatDiagonalScaleLocal_MPIBAIJ);CHKERRQ(ierr);
23685bf65638SKris Buschelman   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatSetHashTableFactor_C",
23695bf65638SKris Buschelman                                      "MatSetHashTableFactor_MPIBAIJ",
23705bf65638SKris Buschelman                                      MatSetHashTableFactor_MPIBAIJ);CHKERRQ(ierr);
2371273d9f13SBarry Smith   PetscFunctionReturn(0);
2372273d9f13SBarry Smith }
2373273d9f13SBarry Smith EXTERN_C_END
2374273d9f13SBarry Smith 
2375209238afSKris Buschelman /*MC
2376002d173eSKris Buschelman    MATBAIJ - MATBAIJ = "baij" - A matrix type to be used for block sparse matrices.
2377209238afSKris Buschelman 
2378209238afSKris Buschelman    This matrix type is identical to MATSEQBAIJ when constructed with a single process communicator,
2379209238afSKris Buschelman    and MATMPIBAIJ otherwise.
2380209238afSKris Buschelman 
2381209238afSKris Buschelman    Options Database Keys:
2382209238afSKris Buschelman . -mat_type baij - sets the matrix type to "baij" during a call to MatSetFromOptions()
2383209238afSKris Buschelman 
2384209238afSKris Buschelman   Level: beginner
2385209238afSKris Buschelman 
2386aac34f13SBarry Smith .seealso: MatCreateMPIBAIJ(),MATSEQBAIJ,MATMPIBAIJ, MatMPIBAIJSetPreallocation(), MatMPIBAIJSetPreallocationCSR()
2387209238afSKris Buschelman M*/
2388209238afSKris Buschelman 
2389209238afSKris Buschelman EXTERN_C_BEGIN
2390209238afSKris Buschelman #undef __FUNCT__
2391209238afSKris Buschelman #define __FUNCT__ "MatCreate_BAIJ"
2392be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreate_BAIJ(Mat A)
2393dfbe8321SBarry Smith {
23946849ba73SBarry Smith   PetscErrorCode ierr;
2395b24ad042SBarry Smith   PetscMPIInt    size;
2396209238afSKris Buschelman 
2397209238afSKris Buschelman   PetscFunctionBegin;
2398209238afSKris Buschelman   ierr = PetscObjectChangeTypeName((PetscObject)A,MATBAIJ);CHKERRQ(ierr);
2399209238afSKris Buschelman   ierr = MPI_Comm_size(A->comm,&size);CHKERRQ(ierr);
2400209238afSKris Buschelman   if (size == 1) {
2401209238afSKris Buschelman     ierr = MatSetType(A,MATSEQBAIJ);CHKERRQ(ierr);
2402209238afSKris Buschelman   } else {
2403209238afSKris Buschelman     ierr = MatSetType(A,MATMPIBAIJ);CHKERRQ(ierr);
2404209238afSKris Buschelman   }
2405209238afSKris Buschelman   PetscFunctionReturn(0);
2406209238afSKris Buschelman }
2407209238afSKris Buschelman EXTERN_C_END
2408209238afSKris Buschelman 
24094a2ae208SSatish Balay #undef __FUNCT__
24104a2ae208SSatish Balay #define __FUNCT__ "MatMPIBAIJSetPreallocation"
2411273d9f13SBarry Smith /*@C
2412aac34f13SBarry Smith    MatMPIBAIJSetPreallocation - Allocates memory for a sparse parallel matrix in block AIJ format
2413273d9f13SBarry Smith    (block compressed row).  For good matrix assembly performance
2414273d9f13SBarry Smith    the user should preallocate the matrix storage by setting the parameters
2415273d9f13SBarry Smith    d_nz (or d_nnz) and o_nz (or o_nnz).  By setting these parameters accurately,
2416273d9f13SBarry Smith    performance can be increased by more than a factor of 50.
2417273d9f13SBarry Smith 
2418273d9f13SBarry Smith    Collective on Mat
2419273d9f13SBarry Smith 
2420273d9f13SBarry Smith    Input Parameters:
2421273d9f13SBarry Smith +  A - the matrix
2422273d9f13SBarry Smith .  bs   - size of blockk
2423273d9f13SBarry Smith .  d_nz  - number of block nonzeros per block row in diagonal portion of local
2424273d9f13SBarry Smith            submatrix  (same for all local rows)
2425273d9f13SBarry Smith .  d_nnz - array containing the number of block nonzeros in the various block rows
2426273d9f13SBarry Smith            of the in diagonal portion of the local (possibly different for each block
2427273d9f13SBarry Smith            row) or PETSC_NULL.  You must leave room for the diagonal entry even if it is zero.
2428273d9f13SBarry Smith .  o_nz  - number of block nonzeros per block row in the off-diagonal portion of local
2429273d9f13SBarry Smith            submatrix (same for all local rows).
2430273d9f13SBarry Smith -  o_nnz - array containing the number of nonzeros in the various block rows of the
2431273d9f13SBarry Smith            off-diagonal portion of the local submatrix (possibly different for
2432273d9f13SBarry Smith            each block row) or PETSC_NULL.
2433273d9f13SBarry Smith 
243449a6f317SBarry Smith    If the *_nnz parameter is given then the *_nz parameter is ignored
2435273d9f13SBarry Smith 
2436273d9f13SBarry Smith    Options Database Keys:
2437273d9f13SBarry Smith .   -mat_no_unroll - uses code that does not unroll the loops in the
2438273d9f13SBarry Smith                      block calculations (much slower)
2439273d9f13SBarry Smith .   -mat_block_size - size of the blocks to use
2440273d9f13SBarry Smith 
2441273d9f13SBarry Smith    Notes:
2442273d9f13SBarry Smith    If PETSC_DECIDE or  PETSC_DETERMINE is used for a particular argument on one processor
2443273d9f13SBarry Smith    than it must be used on all processors that share the object for that argument.
2444273d9f13SBarry Smith 
2445273d9f13SBarry Smith    Storage Information:
2446273d9f13SBarry Smith    For a square global matrix we define each processor's diagonal portion
2447273d9f13SBarry Smith    to be its local rows and the corresponding columns (a square submatrix);
2448273d9f13SBarry Smith    each processor's off-diagonal portion encompasses the remainder of the
2449273d9f13SBarry Smith    local matrix (a rectangular submatrix).
2450273d9f13SBarry Smith 
2451273d9f13SBarry Smith    The user can specify preallocated storage for the diagonal part of
2452273d9f13SBarry Smith    the local submatrix with either d_nz or d_nnz (not both).  Set
2453273d9f13SBarry Smith    d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic
2454273d9f13SBarry Smith    memory allocation.  Likewise, specify preallocated storage for the
2455273d9f13SBarry Smith    off-diagonal part of the local submatrix with o_nz or o_nnz (not both).
2456273d9f13SBarry Smith 
2457273d9f13SBarry Smith    Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
2458273d9f13SBarry Smith    the figure below we depict these three local rows and all columns (0-11).
2459273d9f13SBarry Smith 
2460273d9f13SBarry Smith .vb
2461273d9f13SBarry Smith            0 1 2 3 4 5 6 7 8 9 10 11
2462273d9f13SBarry Smith           -------------------
2463273d9f13SBarry Smith    row 3  |  o o o d d d o o o o o o
2464273d9f13SBarry Smith    row 4  |  o o o d d d o o o o o o
2465273d9f13SBarry Smith    row 5  |  o o o d d d o o o o o o
2466273d9f13SBarry Smith           -------------------
2467273d9f13SBarry Smith .ve
2468273d9f13SBarry Smith 
2469273d9f13SBarry Smith    Thus, any entries in the d locations are stored in the d (diagonal)
2470273d9f13SBarry Smith    submatrix, and any entries in the o locations are stored in the
2471273d9f13SBarry Smith    o (off-diagonal) submatrix.  Note that the d and the o submatrices are
2472273d9f13SBarry Smith    stored simply in the MATSEQBAIJ format for compressed row storage.
2473273d9f13SBarry Smith 
2474273d9f13SBarry Smith    Now d_nz should indicate the number of block nonzeros per row in the d matrix,
2475273d9f13SBarry Smith    and o_nz should indicate the number of block nonzeros per row in the o matrix.
2476273d9f13SBarry Smith    In general, for PDE problems in which most nonzeros are near the diagonal,
2477273d9f13SBarry Smith    one expects d_nz >> o_nz.   For large problems you MUST preallocate memory
2478273d9f13SBarry Smith    or you will get TERRIBLE performance; see the users' manual chapter on
2479273d9f13SBarry Smith    matrices.
2480273d9f13SBarry Smith 
2481273d9f13SBarry Smith    Level: intermediate
2482273d9f13SBarry Smith 
2483273d9f13SBarry Smith .keywords: matrix, block, aij, compressed row, sparse, parallel
2484273d9f13SBarry Smith 
2485aac34f13SBarry Smith .seealso: MatCreate(), MatCreateSeqBAIJ(), MatSetValues(), MatCreateMPIBAIJ(), MatMPIBAIJSetPreallocationCSR()
2486273d9f13SBarry Smith @*/
2487be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPIBAIJSetPreallocation(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[])
2488273d9f13SBarry Smith {
2489b24ad042SBarry Smith   PetscErrorCode ierr,(*f)(Mat,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[]);
2490273d9f13SBarry Smith 
2491273d9f13SBarry Smith   PetscFunctionBegin;
2492a23d5eceSKris Buschelman   ierr = PetscObjectQueryFunction((PetscObject)B,"MatMPIBAIJSetPreallocation_C",(void (**)(void))&f);CHKERRQ(ierr);
2493a23d5eceSKris Buschelman   if (f) {
2494a23d5eceSKris Buschelman     ierr = (*f)(B,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr);
2495273d9f13SBarry Smith   }
2496273d9f13SBarry Smith   PetscFunctionReturn(0);
2497273d9f13SBarry Smith }
2498273d9f13SBarry Smith 
24994a2ae208SSatish Balay #undef __FUNCT__
25004a2ae208SSatish Balay #define __FUNCT__ "MatCreateMPIBAIJ"
250179bdfe76SSatish Balay /*@C
250279bdfe76SSatish Balay    MatCreateMPIBAIJ - Creates a sparse parallel matrix in block AIJ format
250379bdfe76SSatish Balay    (block compressed row).  For good matrix assembly performance
250479bdfe76SSatish Balay    the user should preallocate the matrix storage by setting the parameters
250579bdfe76SSatish Balay    d_nz (or d_nnz) and o_nz (or o_nnz).  By setting these parameters accurately,
250679bdfe76SSatish Balay    performance can be increased by more than a factor of 50.
250779bdfe76SSatish Balay 
2508db81eaa0SLois Curfman McInnes    Collective on MPI_Comm
2509db81eaa0SLois Curfman McInnes 
251079bdfe76SSatish Balay    Input Parameters:
2511db81eaa0SLois Curfman McInnes +  comm - MPI communicator
251279bdfe76SSatish Balay .  bs   - size of blockk
251379bdfe76SSatish Balay .  m - number of local rows (or PETSC_DECIDE to have calculated if M is given)
251492e8d321SLois Curfman McInnes            This value should be the same as the local size used in creating the
251592e8d321SLois Curfman McInnes            y vector for the matrix-vector product y = Ax.
251692e8d321SLois Curfman McInnes .  n - number of local columns (or PETSC_DECIDE to have calculated if N is given)
251792e8d321SLois Curfman McInnes            This value should be the same as the local size used in creating the
251892e8d321SLois Curfman McInnes            x vector for the matrix-vector product y = Ax.
2519be79a94dSBarry Smith .  M - number of global rows (or PETSC_DETERMINE to have calculated if m is given)
2520be79a94dSBarry Smith .  N - number of global columns (or PETSC_DETERMINE to have calculated if n is given)
252147a75d0bSBarry Smith .  d_nz  - number of nonzero blocks per block row in diagonal portion of local
252279bdfe76SSatish Balay            submatrix  (same for all local rows)
252347a75d0bSBarry Smith .  d_nnz - array containing the number of nonzero blocks in the various block rows
252492e8d321SLois Curfman McInnes            of the in diagonal portion of the local (possibly different for each block
2525db81eaa0SLois Curfman McInnes            row) or PETSC_NULL.  You must leave room for the diagonal entry even if it is zero.
252647a75d0bSBarry Smith .  o_nz  - number of nonzero blocks per block row in the off-diagonal portion of local
252779bdfe76SSatish Balay            submatrix (same for all local rows).
252847a75d0bSBarry Smith -  o_nnz - array containing the number of nonzero blocks in the various block rows of the
252992e8d321SLois Curfman McInnes            off-diagonal portion of the local submatrix (possibly different for
253092e8d321SLois Curfman McInnes            each block row) or PETSC_NULL.
253179bdfe76SSatish Balay 
253279bdfe76SSatish Balay    Output Parameter:
253379bdfe76SSatish Balay .  A - the matrix
253479bdfe76SSatish Balay 
2535db81eaa0SLois Curfman McInnes    Options Database Keys:
2536db81eaa0SLois Curfman McInnes .   -mat_no_unroll - uses code that does not unroll the loops in the
2537db81eaa0SLois Curfman McInnes                      block calculations (much slower)
2538db81eaa0SLois Curfman McInnes .   -mat_block_size - size of the blocks to use
25393ffaccefSLois Curfman McInnes 
2540b259b22eSLois Curfman McInnes    Notes:
254149a6f317SBarry Smith    If the *_nnz parameter is given then the *_nz parameter is ignored
254249a6f317SBarry Smith 
254347a75d0bSBarry Smith    A nonzero block is any block that as 1 or more nonzeros in it
254447a75d0bSBarry Smith 
254579bdfe76SSatish Balay    The user MUST specify either the local or global matrix dimensions
254679bdfe76SSatish Balay    (possibly both).
254779bdfe76SSatish Balay 
2548be79a94dSBarry Smith    If PETSC_DECIDE or  PETSC_DETERMINE is used for a particular argument on one processor
2549be79a94dSBarry Smith    than it must be used on all processors that share the object for that argument.
2550be79a94dSBarry Smith 
255179bdfe76SSatish Balay    Storage Information:
255279bdfe76SSatish Balay    For a square global matrix we define each processor's diagonal portion
255379bdfe76SSatish Balay    to be its local rows and the corresponding columns (a square submatrix);
255479bdfe76SSatish Balay    each processor's off-diagonal portion encompasses the remainder of the
255579bdfe76SSatish Balay    local matrix (a rectangular submatrix).
255679bdfe76SSatish Balay 
255779bdfe76SSatish Balay    The user can specify preallocated storage for the diagonal part of
255879bdfe76SSatish Balay    the local submatrix with either d_nz or d_nnz (not both).  Set
255979bdfe76SSatish Balay    d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic
256079bdfe76SSatish Balay    memory allocation.  Likewise, specify preallocated storage for the
256179bdfe76SSatish Balay    off-diagonal part of the local submatrix with o_nz or o_nnz (not both).
256279bdfe76SSatish Balay 
256379bdfe76SSatish Balay    Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
256479bdfe76SSatish Balay    the figure below we depict these three local rows and all columns (0-11).
256579bdfe76SSatish Balay 
2566db81eaa0SLois Curfman McInnes .vb
2567db81eaa0SLois Curfman McInnes            0 1 2 3 4 5 6 7 8 9 10 11
2568db81eaa0SLois Curfman McInnes           -------------------
2569db81eaa0SLois Curfman McInnes    row 3  |  o o o d d d o o o o o o
2570db81eaa0SLois Curfman McInnes    row 4  |  o o o d d d o o o o o o
2571db81eaa0SLois Curfman McInnes    row 5  |  o o o d d d o o o o o o
2572db81eaa0SLois Curfman McInnes           -------------------
2573db81eaa0SLois Curfman McInnes .ve
257479bdfe76SSatish Balay 
257579bdfe76SSatish Balay    Thus, any entries in the d locations are stored in the d (diagonal)
257679bdfe76SSatish Balay    submatrix, and any entries in the o locations are stored in the
257779bdfe76SSatish Balay    o (off-diagonal) submatrix.  Note that the d and the o submatrices are
257857b952d6SSatish Balay    stored simply in the MATSEQBAIJ format for compressed row storage.
257979bdfe76SSatish Balay 
2580d64ed03dSBarry Smith    Now d_nz should indicate the number of block nonzeros per row in the d matrix,
2581d64ed03dSBarry Smith    and o_nz should indicate the number of block nonzeros per row in the o matrix.
258279bdfe76SSatish Balay    In general, for PDE problems in which most nonzeros are near the diagonal,
258392e8d321SLois Curfman McInnes    one expects d_nz >> o_nz.   For large problems you MUST preallocate memory
258492e8d321SLois Curfman McInnes    or you will get TERRIBLE performance; see the users' manual chapter on
25856da5968aSLois Curfman McInnes    matrices.
258679bdfe76SSatish Balay 
2587027ccd11SLois Curfman McInnes    Level: intermediate
2588027ccd11SLois Curfman McInnes 
258992e8d321SLois Curfman McInnes .keywords: matrix, block, aij, compressed row, sparse, parallel
259079bdfe76SSatish Balay 
2591aac34f13SBarry Smith .seealso: MatCreate(), MatCreateSeqBAIJ(), MatSetValues(), MatCreateMPIBAIJ(), MatMPIBAIJSetPreallocation(), MatMPIBAIJSetPreallocationCSR()
259279bdfe76SSatish Balay @*/
2593be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreateMPIBAIJ(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[],Mat *A)
259479bdfe76SSatish Balay {
25956849ba73SBarry Smith   PetscErrorCode ierr;
2596b24ad042SBarry Smith   PetscMPIInt    size;
259779bdfe76SSatish Balay 
2598d64ed03dSBarry Smith   PetscFunctionBegin;
2599f69a0ea3SMatthew Knepley   ierr = MatCreate(comm,A);CHKERRQ(ierr);
2600f69a0ea3SMatthew Knepley   ierr = MatSetSizes(*A,m,n,M,N);CHKERRQ(ierr);
2601d132466eSBarry Smith   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
2602273d9f13SBarry Smith   if (size > 1) {
2603273d9f13SBarry Smith     ierr = MatSetType(*A,MATMPIBAIJ);CHKERRQ(ierr);
2604273d9f13SBarry Smith     ierr = MatMPIBAIJSetPreallocation(*A,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr);
2605273d9f13SBarry Smith   } else {
2606273d9f13SBarry Smith     ierr = MatSetType(*A,MATSEQBAIJ);CHKERRQ(ierr);
2607273d9f13SBarry Smith     ierr = MatSeqBAIJSetPreallocation(*A,bs,d_nz,d_nnz);CHKERRQ(ierr);
26083914022bSBarry Smith   }
26093a40ed3dSBarry Smith   PetscFunctionReturn(0);
261079bdfe76SSatish Balay }
2611026e39d0SSatish Balay 
26124a2ae208SSatish Balay #undef __FUNCT__
26134a2ae208SSatish Balay #define __FUNCT__ "MatDuplicate_MPIBAIJ"
26146849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIBAIJ(Mat matin,MatDuplicateOption cpvalues,Mat *newmat)
26150ac07820SSatish Balay {
26160ac07820SSatish Balay   Mat            mat;
26170ac07820SSatish Balay   Mat_MPIBAIJ    *a,*oldmat = (Mat_MPIBAIJ*)matin->data;
2618dfbe8321SBarry Smith   PetscErrorCode ierr;
2619b24ad042SBarry Smith   PetscInt       len=0;
26200ac07820SSatish Balay 
2621d64ed03dSBarry Smith   PetscFunctionBegin;
26220ac07820SSatish Balay   *newmat       = 0;
2623f69a0ea3SMatthew Knepley   ierr = MatCreate(matin->comm,&mat);CHKERRQ(ierr);
2624899cda47SBarry Smith   ierr = MatSetSizes(mat,matin->rmap.n,matin->cmap.n,matin->rmap.N,matin->cmap.N);CHKERRQ(ierr);
2625be5d1d56SKris Buschelman   ierr = MatSetType(mat,matin->type_name);CHKERRQ(ierr);
26261d5dac46SHong Zhang   ierr = PetscMemcpy(mat->ops,matin->ops,sizeof(struct _MatOps));CHKERRQ(ierr);
26277fff6886SHong Zhang 
26284beb1cfeSHong Zhang   mat->factor       = matin->factor;
2629273d9f13SBarry Smith   mat->preallocated = PETSC_TRUE;
26300ac07820SSatish Balay   mat->assembled    = PETSC_TRUE;
26317fff6886SHong Zhang   mat->insertmode   = NOT_SET_VALUES;
26327fff6886SHong Zhang 
2633273d9f13SBarry Smith   a      = (Mat_MPIBAIJ*)mat->data;
2634899cda47SBarry Smith   mat->rmap.bs  = matin->rmap.bs;
26350ac07820SSatish Balay   a->bs2   = oldmat->bs2;
26360ac07820SSatish Balay   a->mbs   = oldmat->mbs;
26370ac07820SSatish Balay   a->nbs   = oldmat->nbs;
26380ac07820SSatish Balay   a->Mbs   = oldmat->Mbs;
26390ac07820SSatish Balay   a->Nbs   = oldmat->Nbs;
26400ac07820SSatish Balay 
2641899cda47SBarry Smith   ierr = PetscMapCopy(matin->comm,&matin->rmap,&mat->rmap);CHKERRQ(ierr);
2642899cda47SBarry Smith   ierr = PetscMapCopy(matin->comm,&matin->cmap,&mat->cmap);CHKERRQ(ierr);
2643899cda47SBarry Smith 
26440ac07820SSatish Balay   a->size         = oldmat->size;
26450ac07820SSatish Balay   a->rank         = oldmat->rank;
2646aef5e8e0SSatish Balay   a->donotstash   = oldmat->donotstash;
2647aef5e8e0SSatish Balay   a->roworiented  = oldmat->roworiented;
2648aef5e8e0SSatish Balay   a->rowindices   = 0;
26490ac07820SSatish Balay   a->rowvalues    = 0;
26500ac07820SSatish Balay   a->getrowactive = PETSC_FALSE;
265130793edcSSatish Balay   a->barray       = 0;
2652899cda47SBarry Smith   a->rstartbs     = oldmat->rstartbs;
2653899cda47SBarry Smith   a->rendbs       = oldmat->rendbs;
2654899cda47SBarry Smith   a->cstartbs     = oldmat->cstartbs;
2655899cda47SBarry Smith   a->cendbs       = oldmat->cendbs;
26560ac07820SSatish Balay 
2657133cdb44SSatish Balay   /* hash table stuff */
2658133cdb44SSatish Balay   a->ht           = 0;
2659133cdb44SSatish Balay   a->hd           = 0;
2660133cdb44SSatish Balay   a->ht_size      = 0;
2661133cdb44SSatish Balay   a->ht_flag      = oldmat->ht_flag;
266225fdafccSSatish Balay   a->ht_fact      = oldmat->ht_fact;
2663133cdb44SSatish Balay   a->ht_total_ct  = 0;
2664133cdb44SSatish Balay   a->ht_insert_ct = 0;
2665133cdb44SSatish Balay 
2666899cda47SBarry Smith   ierr = PetscMemcpy(a->rangebs,oldmat->rangebs,(a->size+1)*sizeof(PetscInt));CHKERRQ(ierr);
26678798bf22SSatish Balay   ierr = MatStashCreate_Private(matin->comm,1,&mat->stash);CHKERRQ(ierr);
2668899cda47SBarry Smith   ierr = MatStashCreate_Private(matin->comm,matin->rmap.bs,&mat->bstash);CHKERRQ(ierr);
26690ac07820SSatish Balay   if (oldmat->colmap) {
2670aa482453SBarry Smith #if defined (PETSC_USE_CTABLE)
26710f5bd95cSBarry Smith   ierr = PetscTableCreateCopy(oldmat->colmap,&a->colmap);CHKERRQ(ierr);
267248e59246SSatish Balay #else
2673b24ad042SBarry Smith   ierr = PetscMalloc((a->Nbs)*sizeof(PetscInt),&a->colmap);CHKERRQ(ierr);
267452e6d16bSBarry Smith   ierr = PetscLogObjectMemory(mat,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr);
2675b24ad042SBarry Smith   ierr = PetscMemcpy(a->colmap,oldmat->colmap,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr);
267648e59246SSatish Balay #endif
26770ac07820SSatish Balay   } else a->colmap = 0;
26784beb1cfeSHong Zhang 
26790ac07820SSatish Balay   if (oldmat->garray && (len = ((Mat_SeqBAIJ*)(oldmat->B->data))->nbs)) {
2680b24ad042SBarry Smith     ierr = PetscMalloc(len*sizeof(PetscInt),&a->garray);CHKERRQ(ierr);
268152e6d16bSBarry Smith     ierr = PetscLogObjectMemory(mat,len*sizeof(PetscInt));CHKERRQ(ierr);
2682b24ad042SBarry Smith     ierr = PetscMemcpy(a->garray,oldmat->garray,len*sizeof(PetscInt));CHKERRQ(ierr);
26830ac07820SSatish Balay   } else a->garray = 0;
26840ac07820SSatish Balay 
26850ac07820SSatish Balay   ierr = VecDuplicate(oldmat->lvec,&a->lvec);CHKERRQ(ierr);
268652e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->lvec);CHKERRQ(ierr);
26870ac07820SSatish Balay   ierr = VecScatterCopy(oldmat->Mvctx,&a->Mvctx);CHKERRQ(ierr);
268852e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->Mvctx);CHKERRQ(ierr);
26897fff6886SHong Zhang 
26902e8a6d31SBarry Smith   ierr =  MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr);
269152e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->A);CHKERRQ(ierr);
26922e8a6d31SBarry Smith   ierr =  MatDuplicate(oldmat->B,cpvalues,&a->B);CHKERRQ(ierr);
269352e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->B);CHKERRQ(ierr);
2694b0a32e0cSBarry Smith   ierr = PetscFListDuplicate(matin->qlist,&mat->qlist);CHKERRQ(ierr);
26950ac07820SSatish Balay   *newmat = mat;
26964beb1cfeSHong Zhang 
26973a40ed3dSBarry Smith   PetscFunctionReturn(0);
26980ac07820SSatish Balay }
269957b952d6SSatish Balay 
2700e090d566SSatish Balay #include "petscsys.h"
270157b952d6SSatish Balay 
27024a2ae208SSatish Balay #undef __FUNCT__
27034a2ae208SSatish Balay #define __FUNCT__ "MatLoad_MPIBAIJ"
2704f69a0ea3SMatthew Knepley PetscErrorCode MatLoad_MPIBAIJ(PetscViewer viewer, MatType type,Mat *newmat)
270557b952d6SSatish Balay {
270657b952d6SSatish Balay   Mat            A;
27076849ba73SBarry Smith   PetscErrorCode ierr;
2708b24ad042SBarry Smith   int            fd;
2709b24ad042SBarry Smith   PetscInt       i,nz,j,rstart,rend;
271087828ca2SBarry Smith   PetscScalar    *vals,*buf;
271157b952d6SSatish Balay   MPI_Comm       comm = ((PetscObject)viewer)->comm;
271257b952d6SSatish Balay   MPI_Status     status;
2713b24ad042SBarry Smith   PetscMPIInt    rank,size,maxnz;
2714b24ad042SBarry Smith   PetscInt       header[4],*rowlengths = 0,M,N,m,*rowners,*cols;
2715*910ba992SMatthew Knepley   PetscInt       *locrowlens = PETSC_NULL,*procsnz = PETSC_NULL,*browners = PETSC_NULL;
2716167e7480SBarry Smith   PetscInt       jj,*mycols,*ibuf,bs=1,Mbs,mbs,extra_rows,mmax;
2717dc231df0SBarry Smith   PetscMPIInt    tag = ((PetscObject)viewer)->tag;
2718*910ba992SMatthew Knepley   PetscInt       *dlens = PETSC_NULL,*odlens = PETSC_NULL,*mask = PETSC_NULL,*masked1 = PETSC_NULL,*masked2 = PETSC_NULL,rowcount,odcount;
2719dc231df0SBarry Smith   PetscInt       dcount,kmax,k,nzcount,tmp,mend;
272057b952d6SSatish Balay 
2721d64ed03dSBarry Smith   PetscFunctionBegin;
2722b0a32e0cSBarry Smith   ierr = PetscOptionsGetInt(PETSC_NULL,"-matload_block_size",&bs,PETSC_NULL);CHKERRQ(ierr);
272357b952d6SSatish Balay 
2724d132466eSBarry Smith   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
2725d132466eSBarry Smith   ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr);
272657b952d6SSatish Balay   if (!rank) {
2727b0a32e0cSBarry Smith     ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr);
2728e5638eb3SBarry Smith     ierr = PetscBinaryRead(fd,(char *)header,4,PETSC_INT);CHKERRQ(ierr);
2729552e946dSBarry Smith     if (header[0] != MAT_FILE_COOKIE) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"not matrix object");
27306c5fab8fSBarry Smith   }
2731d64ed03dSBarry Smith 
2732b24ad042SBarry Smith   ierr = MPI_Bcast(header+1,3,MPIU_INT,0,comm);CHKERRQ(ierr);
273357b952d6SSatish Balay   M = header[1]; N = header[2];
273457b952d6SSatish Balay 
273529bbc08cSBarry Smith   if (M != N) SETERRQ(PETSC_ERR_SUP,"Can only do square matrices");
273657b952d6SSatish Balay 
273757b952d6SSatish Balay   /*
273857b952d6SSatish Balay      This code adds extra rows to make sure the number of rows is
273957b952d6SSatish Balay      divisible by the blocksize
274057b952d6SSatish Balay   */
274157b952d6SSatish Balay   Mbs        = M/bs;
2742dc231df0SBarry Smith   extra_rows = bs - M + bs*Mbs;
274357b952d6SSatish Balay   if (extra_rows == bs) extra_rows = 0;
274457b952d6SSatish Balay   else                  Mbs++;
274557b952d6SSatish Balay   if (extra_rows && !rank) {
2746ae15b995SBarry Smith     ierr = PetscInfo(0,"Padding loaded matrix to match blocksize\n");CHKERRQ(ierr);
274757b952d6SSatish Balay   }
2748537820f0SBarry Smith 
274957b952d6SSatish Balay   /* determine ownership of all rows */
275057b952d6SSatish Balay   mbs        = Mbs/size + ((Mbs % size) > rank);
275157b952d6SSatish Balay   m          = mbs*bs;
2752dc231df0SBarry Smith   ierr       = PetscMalloc2(size+1,PetscInt,&rowners,size+1,PetscInt,&browners);CHKERRQ(ierr);
2753b24ad042SBarry Smith   ierr       = MPI_Allgather(&mbs,1,MPIU_INT,rowners+1,1,MPIU_INT,comm);CHKERRQ(ierr);
2754167e7480SBarry Smith 
2755167e7480SBarry Smith   /* process 0 needs enough room for process with most rows */
2756167e7480SBarry Smith   if (!rank) {
2757167e7480SBarry Smith     mmax = rowners[1];
2758167e7480SBarry Smith     for (i=2; i<size; i++) {
2759167e7480SBarry Smith       mmax = PetscMax(mmax,rowners[i]);
2760167e7480SBarry Smith     }
2761ca02efcfSSatish Balay     mmax*=bs;
2762167e7480SBarry Smith   } else mmax = m;
2763167e7480SBarry Smith 
276457b952d6SSatish Balay   rowners[0] = 0;
2765cee3aa6bSSatish Balay   for (i=2; i<=size; i++)  rowners[i] += rowners[i-1];
2766cee3aa6bSSatish Balay   for (i=0; i<=size;  i++) browners[i] = rowners[i]*bs;
276757b952d6SSatish Balay   rstart = rowners[rank];
276857b952d6SSatish Balay   rend   = rowners[rank+1];
276957b952d6SSatish Balay 
277057b952d6SSatish Balay   /* distribute row lengths to all processors */
277119c38ff2SBarry Smith   ierr = PetscMalloc((mmax+1)*sizeof(PetscInt),&locrowlens);CHKERRQ(ierr);
277257b952d6SSatish Balay   if (!rank) {
2773dc231df0SBarry Smith     mend = m;
2774dc231df0SBarry Smith     if (size == 1) mend = mend - extra_rows;
2775dc231df0SBarry Smith     ierr = PetscBinaryRead(fd,locrowlens,mend,PETSC_INT);CHKERRQ(ierr);
2776dc231df0SBarry Smith     for (j=mend; j<m; j++) locrowlens[j] = 1;
2777dc231df0SBarry Smith     ierr = PetscMalloc(m*sizeof(PetscInt),&rowlengths);CHKERRQ(ierr);
2778b24ad042SBarry Smith     ierr = PetscMalloc(size*sizeof(PetscInt),&procsnz);CHKERRQ(ierr);
2779b24ad042SBarry Smith     ierr = PetscMemzero(procsnz,size*sizeof(PetscInt));CHKERRQ(ierr);
2780dc231df0SBarry Smith     for (j=0; j<m; j++) {
2781dc231df0SBarry Smith       procsnz[0] += locrowlens[j];
2782dc231df0SBarry Smith     }
2783dc231df0SBarry Smith     for (i=1; i<size; i++) {
2784dc231df0SBarry Smith       mend = browners[i+1] - browners[i];
2785dc231df0SBarry Smith       if (i == size-1) mend = mend - extra_rows;
2786dc231df0SBarry Smith       ierr = PetscBinaryRead(fd,rowlengths,mend,PETSC_INT);CHKERRQ(ierr);
2787dc231df0SBarry Smith       for (j=mend; j<browners[i+1] - browners[i]; j++) rowlengths[j] = 1;
2788dc231df0SBarry Smith       /* calculate the number of nonzeros on each processor */
2789dc231df0SBarry Smith       for (j=0; j<browners[i+1]-browners[i]; j++) {
279057b952d6SSatish Balay         procsnz[i] += rowlengths[j];
279157b952d6SSatish Balay       }
2792dc231df0SBarry Smith       ierr = MPI_Send(rowlengths,browners[i+1]-browners[i],MPIU_INT,i,tag,comm);CHKERRQ(ierr);
279357b952d6SSatish Balay     }
2794606d414cSSatish Balay     ierr = PetscFree(rowlengths);CHKERRQ(ierr);
2795dc231df0SBarry Smith   } else {
2796dc231df0SBarry Smith     ierr = MPI_Recv(locrowlens,m,MPIU_INT,0,tag,comm,&status);CHKERRQ(ierr);
2797dc231df0SBarry Smith   }
279857b952d6SSatish Balay 
2799dc231df0SBarry Smith   if (!rank) {
280057b952d6SSatish Balay     /* determine max buffer needed and allocate it */
28018a8e0b3aSBarry Smith     maxnz = procsnz[0];
2802cdc0ba36SBarry Smith     for (i=1; i<size; i++) {
280357b952d6SSatish Balay       maxnz = PetscMax(maxnz,procsnz[i]);
280457b952d6SSatish Balay     }
2805b24ad042SBarry Smith     ierr = PetscMalloc(maxnz*sizeof(PetscInt),&cols);CHKERRQ(ierr);
280657b952d6SSatish Balay 
280757b952d6SSatish Balay     /* read in my part of the matrix column indices  */
280857b952d6SSatish Balay     nz     = procsnz[0];
280919c38ff2SBarry Smith     ierr   = PetscMalloc((nz+1)*sizeof(PetscInt),&ibuf);CHKERRQ(ierr);
281057b952d6SSatish Balay     mycols = ibuf;
2811cee3aa6bSSatish Balay     if (size == 1)  nz -= extra_rows;
2812e5638eb3SBarry Smith     ierr = PetscBinaryRead(fd,mycols,nz,PETSC_INT);CHKERRQ(ierr);
2813cee3aa6bSSatish Balay     if (size == 1)  for (i=0; i< extra_rows; i++) { mycols[nz+i] = M+i; }
2814cee3aa6bSSatish Balay 
281557b952d6SSatish Balay     /* read in every ones (except the last) and ship off */
281657b952d6SSatish Balay     for (i=1; i<size-1; i++) {
281757b952d6SSatish Balay       nz   = procsnz[i];
2818e5638eb3SBarry Smith       ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr);
2819b24ad042SBarry Smith       ierr = MPI_Send(cols,nz,MPIU_INT,i,tag,comm);CHKERRQ(ierr);
282057b952d6SSatish Balay     }
282157b952d6SSatish Balay     /* read in the stuff for the last proc */
282257b952d6SSatish Balay     if (size != 1) {
282357b952d6SSatish Balay       nz   = procsnz[size-1] - extra_rows;  /* the extra rows are not on the disk */
2824e5638eb3SBarry Smith       ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr);
282557b952d6SSatish Balay       for (i=0; i<extra_rows; i++) cols[nz+i] = M+i;
2826b24ad042SBarry Smith       ierr = MPI_Send(cols,nz+extra_rows,MPIU_INT,size-1,tag,comm);CHKERRQ(ierr);
282757b952d6SSatish Balay     }
2828606d414cSSatish Balay     ierr = PetscFree(cols);CHKERRQ(ierr);
2829d64ed03dSBarry Smith   } else {
283057b952d6SSatish Balay     /* determine buffer space needed for message */
283157b952d6SSatish Balay     nz = 0;
283257b952d6SSatish Balay     for (i=0; i<m; i++) {
283357b952d6SSatish Balay       nz += locrowlens[i];
283457b952d6SSatish Balay     }
283519c38ff2SBarry Smith     ierr   = PetscMalloc((nz+1)*sizeof(PetscInt),&ibuf);CHKERRQ(ierr);
283657b952d6SSatish Balay     mycols = ibuf;
283757b952d6SSatish Balay     /* receive message of column indices*/
2838b24ad042SBarry Smith     ierr = MPI_Recv(mycols,nz,MPIU_INT,0,tag,comm,&status);CHKERRQ(ierr);
2839b24ad042SBarry Smith     ierr = MPI_Get_count(&status,MPIU_INT,&maxnz);CHKERRQ(ierr);
284029bbc08cSBarry Smith     if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file");
284157b952d6SSatish Balay   }
284257b952d6SSatish Balay 
284357b952d6SSatish Balay   /* loop over local rows, determining number of off diagonal entries */
2844dc231df0SBarry Smith   ierr     = PetscMalloc2(rend-rstart,PetscInt,&dlens,rend-rstart,PetscInt,&odlens);CHKERRQ(ierr);
2845dc231df0SBarry Smith   ierr     = PetscMalloc3(Mbs,PetscInt,&mask,Mbs,PetscInt,&masked1,Mbs,PetscInt,&masked2);CHKERRQ(ierr);
2846dc231df0SBarry Smith   ierr     = PetscMemzero(mask,Mbs*sizeof(PetscInt));CHKERRQ(ierr);
2847dc231df0SBarry Smith   ierr     = PetscMemzero(masked1,Mbs*sizeof(PetscInt));CHKERRQ(ierr);
2848dc231df0SBarry Smith   ierr     = PetscMemzero(masked2,Mbs*sizeof(PetscInt));CHKERRQ(ierr);
284957b952d6SSatish Balay   rowcount = 0; nzcount = 0;
285057b952d6SSatish Balay   for (i=0; i<mbs; i++) {
285157b952d6SSatish Balay     dcount  = 0;
285257b952d6SSatish Balay     odcount = 0;
285357b952d6SSatish Balay     for (j=0; j<bs; j++) {
285457b952d6SSatish Balay       kmax = locrowlens[rowcount];
285557b952d6SSatish Balay       for (k=0; k<kmax; k++) {
285657b952d6SSatish Balay         tmp = mycols[nzcount++]/bs;
285757b952d6SSatish Balay         if (!mask[tmp]) {
285857b952d6SSatish Balay           mask[tmp] = 1;
285957b952d6SSatish Balay           if (tmp < rstart || tmp >= rend) masked2[odcount++] = tmp;
286057b952d6SSatish Balay           else masked1[dcount++] = tmp;
286157b952d6SSatish Balay         }
286257b952d6SSatish Balay       }
286357b952d6SSatish Balay       rowcount++;
286457b952d6SSatish Balay     }
2865cee3aa6bSSatish Balay 
286657b952d6SSatish Balay     dlens[i]  = dcount;
286757b952d6SSatish Balay     odlens[i] = odcount;
2868cee3aa6bSSatish Balay 
286957b952d6SSatish Balay     /* zero out the mask elements we set */
287057b952d6SSatish Balay     for (j=0; j<dcount; j++) mask[masked1[j]] = 0;
287157b952d6SSatish Balay     for (j=0; j<odcount; j++) mask[masked2[j]] = 0;
287257b952d6SSatish Balay   }
2873cee3aa6bSSatish Balay 
287457b952d6SSatish Balay   /* create our matrix */
2875f69a0ea3SMatthew Knepley   ierr = MatCreate(comm,&A);CHKERRQ(ierr);
2876f69a0ea3SMatthew Knepley   ierr = MatSetSizes(A,m,m,M+extra_rows,N+extra_rows);CHKERRQ(ierr);
287778ae41b4SKris Buschelman   ierr = MatSetType(A,type);CHKERRQ(ierr)
287878ae41b4SKris Buschelman   ierr = MatMPIBAIJSetPreallocation(A,bs,0,dlens,0,odlens);CHKERRQ(ierr);
287978ae41b4SKris Buschelman 
288078ae41b4SKris Buschelman   /* Why doesn't this called using ierr = MatSetOption(A,MAT_COLUMNS_SORTED);CHKERRQ(ierr); */
2881dc231df0SBarry Smith   ierr = MatSetOption(A,MAT_COLUMNS_SORTED);CHKERRQ(ierr);
288257b952d6SSatish Balay 
288357b952d6SSatish Balay   if (!rank) {
288419c38ff2SBarry Smith     ierr = PetscMalloc((maxnz+1)*sizeof(PetscScalar),&buf);CHKERRQ(ierr);
288557b952d6SSatish Balay     /* read in my part of the matrix numerical values  */
288657b952d6SSatish Balay     nz = procsnz[0];
288757b952d6SSatish Balay     vals = buf;
2888cee3aa6bSSatish Balay     mycols = ibuf;
2889cee3aa6bSSatish Balay     if (size == 1)  nz -= extra_rows;
2890e5638eb3SBarry Smith     ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
2891cee3aa6bSSatish Balay     if (size == 1)  for (i=0; i< extra_rows; i++) { vals[nz+i] = 1.0; }
2892537820f0SBarry Smith 
289357b952d6SSatish Balay     /* insert into matrix */
289457b952d6SSatish Balay     jj      = rstart*bs;
289557b952d6SSatish Balay     for (i=0; i<m; i++) {
2896dc231df0SBarry Smith       ierr = MatSetValues_MPIBAIJ(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr);
289757b952d6SSatish Balay       mycols += locrowlens[i];
289857b952d6SSatish Balay       vals   += locrowlens[i];
289957b952d6SSatish Balay       jj++;
290057b952d6SSatish Balay     }
290157b952d6SSatish Balay     /* read in other processors (except the last one) and ship out */
290257b952d6SSatish Balay     for (i=1; i<size-1; i++) {
290357b952d6SSatish Balay       nz   = procsnz[i];
290457b952d6SSatish Balay       vals = buf;
2905e5638eb3SBarry Smith       ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
2906ca161407SBarry Smith       ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,A->tag,comm);CHKERRQ(ierr);
290757b952d6SSatish Balay     }
290857b952d6SSatish Balay     /* the last proc */
290957b952d6SSatish Balay     if (size != 1){
291057b952d6SSatish Balay       nz   = procsnz[i] - extra_rows;
2911cee3aa6bSSatish Balay       vals = buf;
2912e5638eb3SBarry Smith       ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
291357b952d6SSatish Balay       for (i=0; i<extra_rows; i++) vals[nz+i] = 1.0;
2914ca161407SBarry Smith       ierr = MPI_Send(vals,nz+extra_rows,MPIU_SCALAR,size-1,A->tag,comm);CHKERRQ(ierr);
291557b952d6SSatish Balay     }
2916606d414cSSatish Balay     ierr = PetscFree(procsnz);CHKERRQ(ierr);
2917d64ed03dSBarry Smith   } else {
291857b952d6SSatish Balay     /* receive numeric values */
291919c38ff2SBarry Smith     ierr = PetscMalloc((nz+1)*sizeof(PetscScalar),&buf);CHKERRQ(ierr);
292057b952d6SSatish Balay 
292157b952d6SSatish Balay     /* receive message of values*/
292257b952d6SSatish Balay     vals   = buf;
2923cee3aa6bSSatish Balay     mycols = ibuf;
2924ca161407SBarry Smith     ierr   = MPI_Recv(vals,nz,MPIU_SCALAR,0,A->tag,comm,&status);CHKERRQ(ierr);
2925ca161407SBarry Smith     ierr   = MPI_Get_count(&status,MPIU_SCALAR,&maxnz);CHKERRQ(ierr);
292629bbc08cSBarry Smith     if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file");
292757b952d6SSatish Balay 
292857b952d6SSatish Balay     /* insert into matrix */
292957b952d6SSatish Balay     jj      = rstart*bs;
2930cee3aa6bSSatish Balay     for (i=0; i<m; i++) {
2931dc231df0SBarry Smith       ierr    = MatSetValues_MPIBAIJ(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr);
293257b952d6SSatish Balay       mycols += locrowlens[i];
293357b952d6SSatish Balay       vals   += locrowlens[i];
293457b952d6SSatish Balay       jj++;
293557b952d6SSatish Balay     }
293657b952d6SSatish Balay   }
2937606d414cSSatish Balay   ierr = PetscFree(locrowlens);CHKERRQ(ierr);
2938606d414cSSatish Balay   ierr = PetscFree(buf);CHKERRQ(ierr);
2939606d414cSSatish Balay   ierr = PetscFree(ibuf);CHKERRQ(ierr);
2940dc231df0SBarry Smith   ierr = PetscFree2(rowners,browners);CHKERRQ(ierr);
2941dc231df0SBarry Smith   ierr = PetscFree2(dlens,odlens);CHKERRQ(ierr);
2942dc231df0SBarry Smith   ierr = PetscFree3(mask,masked1,masked2);CHKERRQ(ierr);
29436d4a8577SBarry Smith   ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
29446d4a8577SBarry Smith   ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
294578ae41b4SKris Buschelman 
294678ae41b4SKris Buschelman   *newmat = A;
29473a40ed3dSBarry Smith   PetscFunctionReturn(0);
294857b952d6SSatish Balay }
294957b952d6SSatish Balay 
29504a2ae208SSatish Balay #undef __FUNCT__
29514a2ae208SSatish Balay #define __FUNCT__ "MatMPIBAIJSetHashTableFactor"
2952133cdb44SSatish Balay /*@
2953133cdb44SSatish Balay    MatMPIBAIJSetHashTableFactor - Sets the factor required to compute the size of the HashTable.
2954133cdb44SSatish Balay 
2955133cdb44SSatish Balay    Input Parameters:
2956133cdb44SSatish Balay .  mat  - the matrix
2957133cdb44SSatish Balay .  fact - factor
2958133cdb44SSatish Balay 
2959fee21e36SBarry Smith    Collective on Mat
2960fee21e36SBarry Smith 
29618c890885SBarry Smith    Level: advanced
29628c890885SBarry Smith 
2963133cdb44SSatish Balay   Notes:
2964133cdb44SSatish Balay    This can also be set by the command line option: -mat_use_hash_table fact
2965133cdb44SSatish Balay 
2966133cdb44SSatish Balay .keywords: matrix, hashtable, factor, HT
2967133cdb44SSatish Balay 
2968133cdb44SSatish Balay .seealso: MatSetOption()
2969133cdb44SSatish Balay @*/
2970be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPIBAIJSetHashTableFactor(Mat mat,PetscReal fact)
2971133cdb44SSatish Balay {
2972dfbe8321SBarry Smith   PetscErrorCode ierr,(*f)(Mat,PetscReal);
29735bf65638SKris Buschelman 
29745bf65638SKris Buschelman   PetscFunctionBegin;
29755bf65638SKris Buschelman   ierr = PetscObjectQueryFunction((PetscObject)mat,"MatSetHashTableFactor_C",(void (**)(void))&f);CHKERRQ(ierr);
29765bf65638SKris Buschelman   if (f) {
29775bf65638SKris Buschelman     ierr = (*f)(mat,fact);CHKERRQ(ierr);
29785bf65638SKris Buschelman   }
29795bf65638SKris Buschelman   PetscFunctionReturn(0);
29805bf65638SKris Buschelman }
29815bf65638SKris Buschelman 
2982be1d678aSKris Buschelman EXTERN_C_BEGIN
29835bf65638SKris Buschelman #undef __FUNCT__
29845bf65638SKris Buschelman #define __FUNCT__ "MatSetHashTableFactor_MPIBAIJ"
2985be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatSetHashTableFactor_MPIBAIJ(Mat mat,PetscReal fact)
29865bf65638SKris Buschelman {
298725fdafccSSatish Balay   Mat_MPIBAIJ *baij;
2988133cdb44SSatish Balay 
2989133cdb44SSatish Balay   PetscFunctionBegin;
2990133cdb44SSatish Balay   baij = (Mat_MPIBAIJ*)mat->data;
2991133cdb44SSatish Balay   baij->ht_fact = fact;
2992133cdb44SSatish Balay   PetscFunctionReturn(0);
2993133cdb44SSatish Balay }
2994be1d678aSKris Buschelman EXTERN_C_END
2995f2a5309cSSatish Balay 
29964a2ae208SSatish Balay #undef __FUNCT__
29974a2ae208SSatish Balay #define __FUNCT__ "MatMPIBAIJGetSeqBAIJ"
2998be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPIBAIJGetSeqBAIJ(Mat A,Mat *Ad,Mat *Ao,PetscInt *colmap[])
2999f2a5309cSSatish Balay {
3000f2a5309cSSatish Balay   Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data;
3001f2a5309cSSatish Balay   PetscFunctionBegin;
3002f2a5309cSSatish Balay   *Ad     = a->A;
3003f2a5309cSSatish Balay   *Ao     = a->B;
3004195d93cdSBarry Smith   *colmap = a->garray;
3005f2a5309cSSatish Balay   PetscFunctionReturn(0);
3006f2a5309cSSatish Balay }
3007