xref: /petsc/src/mat/impls/baij/mpi/mpibaij.c (revision 9245e7496f19085098a102c852c40f8ba5bf1cee)
1c6db04a5SJed Brown #include <../src/mat/impls/baij/mpi/mpibaij.h>   /*I  "petscmat.h"  I*/
2c5d9258eSSatish Balay 
3b51a4376SLisandro Dalcin #include <petsc/private/hashseti.h>
4c6db04a5SJed Brown #include <petscblaslapack.h>
565a92638SMatthew G. Knepley #include <petscsf.h>
679bdfe76SSatish Balay 
77ea3e4caSstefano_zampini #if defined(PETSC_HAVE_HYPRE)
87ea3e4caSstefano_zampini PETSC_INTERN PetscErrorCode MatConvert_AIJ_HYPRE(Mat,MatType,MatReuse,Mat*);
97ea3e4caSstefano_zampini #endif
107ea3e4caSstefano_zampini 
11985db425SBarry Smith PetscErrorCode MatGetRowMaxAbs_MPIBAIJ(Mat A,Vec v,PetscInt idx[])
127843d17aSBarry Smith {
137843d17aSBarry Smith   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)A->data;
14dfbe8321SBarry Smith   PetscErrorCode ierr;
15985db425SBarry Smith   PetscInt       i,*idxb = 0;
1687828ca2SBarry Smith   PetscScalar    *va,*vb;
177843d17aSBarry Smith   Vec            vtmp;
187843d17aSBarry Smith 
197843d17aSBarry Smith   PetscFunctionBegin;
20985db425SBarry Smith   ierr = MatGetRowMaxAbs(a->A,v,idx);CHKERRQ(ierr);
211ebc52fbSHong Zhang   ierr = VecGetArray(v,&va);CHKERRQ(ierr);
22985db425SBarry Smith   if (idx) {
2326fbe8dcSKarl Rupp     for (i=0; i<A->rmap->n; i++) {
2426fbe8dcSKarl Rupp       if (PetscAbsScalar(va[i])) idx[i] += A->cmap->rstart;
2526fbe8dcSKarl Rupp     }
26985db425SBarry Smith   }
277843d17aSBarry Smith 
28d0f46423SBarry Smith   ierr = VecCreateSeq(PETSC_COMM_SELF,A->rmap->n,&vtmp);CHKERRQ(ierr);
29785e854fSJed Brown   if (idx) {ierr = PetscMalloc1(A->rmap->n,&idxb);CHKERRQ(ierr);}
30985db425SBarry Smith   ierr = MatGetRowMaxAbs(a->B,vtmp,idxb);CHKERRQ(ierr);
311ebc52fbSHong Zhang   ierr = VecGetArray(vtmp,&vb);CHKERRQ(ierr);
327843d17aSBarry Smith 
33d0f46423SBarry Smith   for (i=0; i<A->rmap->n; i++) {
3426fbe8dcSKarl Rupp     if (PetscAbsScalar(va[i]) < PetscAbsScalar(vb[i])) {
3526fbe8dcSKarl Rupp       va[i] = vb[i];
3626fbe8dcSKarl Rupp       if (idx) idx[i] = A->cmap->bs*a->garray[idxb[i]/A->cmap->bs] + (idxb[i] % A->cmap->bs);
3726fbe8dcSKarl Rupp     }
387843d17aSBarry Smith   }
397843d17aSBarry Smith 
401ebc52fbSHong Zhang   ierr = VecRestoreArray(v,&va);CHKERRQ(ierr);
411ebc52fbSHong Zhang   ierr = VecRestoreArray(vtmp,&vb);CHKERRQ(ierr);
42c31cb41cSBarry Smith   ierr = PetscFree(idxb);CHKERRQ(ierr);
436bf464f9SBarry Smith   ierr = VecDestroy(&vtmp);CHKERRQ(ierr);
447843d17aSBarry Smith   PetscFunctionReturn(0);
457843d17aSBarry Smith }
467843d17aSBarry Smith 
477087cfbeSBarry Smith PetscErrorCode  MatStoreValues_MPIBAIJ(Mat mat)
487fc3c18eSBarry Smith {
497fc3c18eSBarry Smith   Mat_MPIBAIJ    *aij = (Mat_MPIBAIJ*)mat->data;
50dfbe8321SBarry Smith   PetscErrorCode ierr;
517fc3c18eSBarry Smith 
527fc3c18eSBarry Smith   PetscFunctionBegin;
537fc3c18eSBarry Smith   ierr = MatStoreValues(aij->A);CHKERRQ(ierr);
547fc3c18eSBarry Smith   ierr = MatStoreValues(aij->B);CHKERRQ(ierr);
557fc3c18eSBarry Smith   PetscFunctionReturn(0);
567fc3c18eSBarry Smith }
577fc3c18eSBarry Smith 
587087cfbeSBarry Smith PetscErrorCode  MatRetrieveValues_MPIBAIJ(Mat mat)
597fc3c18eSBarry Smith {
607fc3c18eSBarry Smith   Mat_MPIBAIJ    *aij = (Mat_MPIBAIJ*)mat->data;
61dfbe8321SBarry Smith   PetscErrorCode ierr;
627fc3c18eSBarry Smith 
637fc3c18eSBarry Smith   PetscFunctionBegin;
647fc3c18eSBarry Smith   ierr = MatRetrieveValues(aij->A);CHKERRQ(ierr);
657fc3c18eSBarry Smith   ierr = MatRetrieveValues(aij->B);CHKERRQ(ierr);
667fc3c18eSBarry Smith   PetscFunctionReturn(0);
677fc3c18eSBarry Smith }
687fc3c18eSBarry Smith 
69537820f0SBarry Smith /*
70537820f0SBarry Smith      Local utility routine that creates a mapping from the global column
7157b952d6SSatish Balay    number to the local number in the off-diagonal part of the local
72e06f6af7SJed Brown    storage of the matrix.  This is done in a non scalable way since the
7357b952d6SSatish Balay    length of colmap equals the global matrix length.
7457b952d6SSatish Balay */
75ab9863d7SBarry Smith PetscErrorCode MatCreateColmap_MPIBAIJ_Private(Mat mat)
7657b952d6SSatish Balay {
7757b952d6SSatish Balay   Mat_MPIBAIJ    *baij = (Mat_MPIBAIJ*)mat->data;
7857b952d6SSatish Balay   Mat_SeqBAIJ    *B    = (Mat_SeqBAIJ*)baij->B->data;
796849ba73SBarry Smith   PetscErrorCode ierr;
80d0f46423SBarry Smith   PetscInt       nbs = B->nbs,i,bs=mat->rmap->bs;
8157b952d6SSatish Balay 
82d64ed03dSBarry Smith   PetscFunctionBegin;
83aa482453SBarry Smith #if defined(PETSC_USE_CTABLE)
84e23dfa41SBarry Smith   ierr = PetscTableCreate(baij->nbs,baij->Nbs+1,&baij->colmap);CHKERRQ(ierr);
8548e59246SSatish Balay   for (i=0; i<nbs; i++) {
863861aac3SJed Brown     ierr = PetscTableAdd(baij->colmap,baij->garray[i]+1,i*bs+1,INSERT_VALUES);CHKERRQ(ierr);
8748e59246SSatish Balay   }
8848e59246SSatish Balay #else
89580bdb30SBarry Smith   ierr = PetscCalloc1(baij->Nbs+1,&baij->colmap);CHKERRQ(ierr);
903bb1ff40SBarry Smith   ierr = PetscLogObjectMemory((PetscObject)mat,baij->Nbs*sizeof(PetscInt));CHKERRQ(ierr);
91928fc39bSSatish Balay   for (i=0; i<nbs; i++) baij->colmap[baij->garray[i]] = i*bs+1;
9248e59246SSatish Balay #endif
933a40ed3dSBarry Smith   PetscFunctionReturn(0);
9457b952d6SSatish Balay }
9557b952d6SSatish Balay 
96d40312a9SBarry Smith #define  MatSetValues_SeqBAIJ_A_Private(row,col,value,addv,orow,ocol)       \
9780c1aa95SSatish Balay   { \
9880c1aa95SSatish Balay     brow = row/bs;  \
9980c1aa95SSatish Balay     rp   = aj + ai[brow]; ap = aa + bs2*ai[brow]; \
100ac7a638eSSatish Balay     rmax = aimax[brow]; nrow = ailen[brow]; \
10180c1aa95SSatish Balay     bcol = col/bs; \
10280c1aa95SSatish Balay     ridx = row % bs; cidx = col % bs; \
103ab26458aSBarry Smith     low  = 0; high = nrow; \
104ab26458aSBarry Smith     while (high-low > 3) { \
105ab26458aSBarry Smith       t = (low+high)/2; \
106ab26458aSBarry Smith       if (rp[t] > bcol) high = t; \
107ab26458aSBarry Smith       else              low  = t; \
108ab26458aSBarry Smith     } \
109ab26458aSBarry Smith     for (_i=low; _i<high; _i++) { \
11080c1aa95SSatish Balay       if (rp[_i] > bcol) break; \
11180c1aa95SSatish Balay       if (rp[_i] == bcol) { \
11280c1aa95SSatish Balay         bap = ap +  bs2*_i + bs*cidx + ridx; \
113eada6651SSatish Balay         if (addv == ADD_VALUES) *bap += value;  \
114eada6651SSatish Balay         else                    *bap  = value;  \
115ac7a638eSSatish Balay         goto a_noinsert; \
11680c1aa95SSatish Balay       } \
11780c1aa95SSatish Balay     } \
11889280ab3SLois Curfman McInnes     if (a->nonew == 1) goto a_noinsert; \
119d40312a9SBarry Smith     if (a->nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero at global row/column (%D, %D) into matrix", orow, ocol); \
120fef13f97SBarry Smith     MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,brow,bcol,rmax,aa,ai,aj,rp,ap,aimax,a->nonew,MatScalar); \
12180c1aa95SSatish Balay     N = nrow++ - 1;  \
12280c1aa95SSatish Balay     /* shift up all the later entries in this row */ \
123580bdb30SBarry Smith     ierr = PetscArraymove(rp+_i+1,rp+_i,N-_i+1);CHKERRQ(ierr);\
124580bdb30SBarry Smith     ierr = PetscArraymove(ap+bs2*(_i+1),ap+bs2*_i,bs2*(N-_i+1));CHKERRQ(ierr); \
125580bdb30SBarry Smith     ierr = PetscArrayzero(ap+bs2*_i,bs2);CHKERRQ(ierr);  \
12680c1aa95SSatish Balay     rp[_i]                      = bcol;  \
12780c1aa95SSatish Balay     ap[bs2*_i + bs*cidx + ridx] = value;  \
128ac7a638eSSatish Balay a_noinsert:; \
12980c1aa95SSatish Balay     ailen[brow] = nrow; \
13080c1aa95SSatish Balay   }
13157b952d6SSatish Balay 
132d40312a9SBarry Smith #define  MatSetValues_SeqBAIJ_B_Private(row,col,value,addv,orow,ocol)       \
133ac7a638eSSatish Balay   { \
134ac7a638eSSatish Balay     brow = row/bs;  \
135ac7a638eSSatish Balay     rp   = bj + bi[brow]; ap = ba + bs2*bi[brow]; \
136ac7a638eSSatish Balay     rmax = bimax[brow]; nrow = bilen[brow]; \
137ac7a638eSSatish Balay     bcol = col/bs; \
138ac7a638eSSatish Balay     ridx = row % bs; cidx = col % bs; \
139ac7a638eSSatish Balay     low  = 0; high = nrow; \
140ac7a638eSSatish Balay     while (high-low > 3) { \
141ac7a638eSSatish Balay       t = (low+high)/2; \
142ac7a638eSSatish Balay       if (rp[t] > bcol) high = t; \
143ac7a638eSSatish Balay       else              low  = t; \
144ac7a638eSSatish Balay     } \
145ac7a638eSSatish Balay     for (_i=low; _i<high; _i++) { \
146ac7a638eSSatish Balay       if (rp[_i] > bcol) break; \
147ac7a638eSSatish Balay       if (rp[_i] == bcol) { \
148ac7a638eSSatish Balay         bap = ap +  bs2*_i + bs*cidx + ridx; \
149ac7a638eSSatish Balay         if (addv == ADD_VALUES) *bap += value;  \
150ac7a638eSSatish Balay         else                    *bap  = value;  \
151ac7a638eSSatish Balay         goto b_noinsert; \
152ac7a638eSSatish Balay       } \
153ac7a638eSSatish Balay     } \
15489280ab3SLois Curfman McInnes     if (b->nonew == 1) goto b_noinsert; \
155d40312a9SBarry Smith     if (b->nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero at global row/column  (%D, %D) into matrix", orow, ocol); \
156fef13f97SBarry Smith     MatSeqXAIJReallocateAIJ(B,b->mbs,bs2,nrow,brow,bcol,rmax,ba,bi,bj,rp,ap,bimax,b->nonew,MatScalar); \
157ac7a638eSSatish Balay     N = nrow++ - 1;  \
158ac7a638eSSatish Balay     /* shift up all the later entries in this row */ \
159580bdb30SBarry Smith     ierr = PetscArraymove(rp+_i+1,rp+_i,N-_i+1);CHKERRQ(ierr);\
160580bdb30SBarry Smith     ierr = PetscArraymove(ap+bs2*(_i+1),ap+bs2*_i,bs2*(N-_i+1));CHKERRQ(ierr);\
161580bdb30SBarry Smith     ierr = PetscArrayzero(ap+bs2*_i,bs2);CHKERRQ(ierr);  \
162ac7a638eSSatish Balay     rp[_i]                      = bcol;  \
163ac7a638eSSatish Balay     ap[bs2*_i + bs*cidx + ridx] = value;  \
164ac7a638eSSatish Balay b_noinsert:; \
165ac7a638eSSatish Balay     bilen[brow] = nrow; \
166ac7a638eSSatish Balay   }
167ac7a638eSSatish Balay 
168b24ad042SBarry Smith PetscErrorCode MatSetValues_MPIBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv)
16957b952d6SSatish Balay {
17057b952d6SSatish Balay   Mat_MPIBAIJ    *baij = (Mat_MPIBAIJ*)mat->data;
17193fea6afSBarry Smith   MatScalar      value;
172ace3abfcSBarry Smith   PetscBool      roworiented = baij->roworiented;
173dfbe8321SBarry Smith   PetscErrorCode ierr;
174b24ad042SBarry Smith   PetscInt       i,j,row,col;
175d0f46423SBarry Smith   PetscInt       rstart_orig=mat->rmap->rstart;
176d0f46423SBarry Smith   PetscInt       rend_orig  =mat->rmap->rend,cstart_orig=mat->cmap->rstart;
177d0f46423SBarry Smith   PetscInt       cend_orig  =mat->cmap->rend,bs=mat->rmap->bs;
17857b952d6SSatish Balay 
179eada6651SSatish Balay   /* Some Variables required in the macro */
18080c1aa95SSatish Balay   Mat         A     = baij->A;
18180c1aa95SSatish Balay   Mat_SeqBAIJ *a    = (Mat_SeqBAIJ*)(A)->data;
182b24ad042SBarry Smith   PetscInt    *aimax=a->imax,*ai=a->i,*ailen=a->ilen,*aj=a->j;
1833eda8832SBarry Smith   MatScalar   *aa   =a->a;
184ac7a638eSSatish Balay 
185ac7a638eSSatish Balay   Mat         B     = baij->B;
186ac7a638eSSatish Balay   Mat_SeqBAIJ *b    = (Mat_SeqBAIJ*)(B)->data;
187b24ad042SBarry Smith   PetscInt    *bimax=b->imax,*bi=b->i,*bilen=b->ilen,*bj=b->j;
1883eda8832SBarry Smith   MatScalar   *ba   =b->a;
189ac7a638eSSatish Balay 
190b24ad042SBarry Smith   PetscInt  *rp,ii,nrow,_i,rmax,N,brow,bcol;
191b24ad042SBarry Smith   PetscInt  low,high,t,ridx,cidx,bs2=a->bs2;
1923eda8832SBarry Smith   MatScalar *ap,*bap;
19380c1aa95SSatish Balay 
194d64ed03dSBarry Smith   PetscFunctionBegin;
19557b952d6SSatish Balay   for (i=0; i<m; i++) {
1965ef9f2a5SBarry Smith     if (im[i] < 0) continue;
197cf9c20a2SJed Brown     if (PetscUnlikelyDebug(im[i] >= mat->rmap->N)) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],mat->rmap->N-1);
19857b952d6SSatish Balay     if (im[i] >= rstart_orig && im[i] < rend_orig) {
19957b952d6SSatish Balay       row = im[i] - rstart_orig;
20057b952d6SSatish Balay       for (j=0; j<n; j++) {
20157b952d6SSatish Balay         if (in[j] >= cstart_orig && in[j] < cend_orig) {
20257b952d6SSatish Balay           col = in[j] - cstart_orig;
203db4deed7SKarl Rupp           if (roworiented) value = v[i*n+j];
204db4deed7SKarl Rupp           else             value = v[i+j*m];
205d40312a9SBarry Smith           MatSetValues_SeqBAIJ_A_Private(row,col,value,addv,im[i],in[j]);
20673959e64SBarry Smith         } else if (in[j] < 0) continue;
207*9245e749SBarry Smith         else if (PetscUnlikelyDebug(in[j] >= mat->cmap->N)) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",in[j],mat->cmap->N-1);
208*9245e749SBarry Smith         else {
20957b952d6SSatish Balay           if (mat->was_assembled) {
210905e6a2fSBarry Smith             if (!baij->colmap) {
211ab9863d7SBarry Smith               ierr = MatCreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
212905e6a2fSBarry Smith             }
213aa482453SBarry Smith #if defined(PETSC_USE_CTABLE)
2140f5bd95cSBarry Smith             ierr = PetscTableFind(baij->colmap,in[j]/bs + 1,&col);CHKERRQ(ierr);
215bba1ac68SSatish Balay             col  = col - 1;
21648e59246SSatish Balay #else
217bba1ac68SSatish Balay             col = baij->colmap[in[j]/bs] - 1;
21848e59246SSatish Balay #endif
219c9ef50b2SBarry Smith             if (col < 0 && !((Mat_SeqBAIJ*)(baij->B->data))->nonew) {
220ab9863d7SBarry Smith               ierr = MatDisAssemble_MPIBAIJ(mat);CHKERRQ(ierr);
2218295de27SSatish Balay               col  =  in[j];
2229bf004c3SSatish Balay               /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */
2239bf004c3SSatish Balay               B    = baij->B;
2249bf004c3SSatish Balay               b    = (Mat_SeqBAIJ*)(B)->data;
2259bf004c3SSatish Balay               bimax=b->imax;bi=b->i;bilen=b->ilen;bj=b->j;
2269bf004c3SSatish Balay               ba   =b->a;
227c9ef50b2SBarry Smith             } else if (col < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", im[i], in[j]);
228c9ef50b2SBarry Smith             else col += in[j]%bs;
2298295de27SSatish Balay           } else col = in[j];
230db4deed7SKarl Rupp           if (roworiented) value = v[i*n+j];
231db4deed7SKarl Rupp           else             value = v[i+j*m];
232d40312a9SBarry Smith           MatSetValues_SeqBAIJ_B_Private(row,col,value,addv,im[i],in[j]);
23390da58bdSSatish Balay           /* ierr = MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */
23457b952d6SSatish Balay         }
23557b952d6SSatish Balay       }
236d64ed03dSBarry Smith     } else {
2374cb17eb5SBarry Smith       if (mat->nooffprocentries) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Setting off process row %D even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set",im[i]);
23890f02eecSBarry Smith       if (!baij->donotstash) {
2395080c13bSMatthew G Knepley         mat->assembled = PETSC_FALSE;
240ff2fd236SBarry Smith         if (roworiented) {
241b400d20cSBarry Smith           ierr = MatStashValuesRow_Private(&mat->stash,im[i],n,in,v+i*n,PETSC_FALSE);CHKERRQ(ierr);
242ff2fd236SBarry Smith         } else {
243b400d20cSBarry Smith           ierr = MatStashValuesCol_Private(&mat->stash,im[i],n,in,v+i,m,PETSC_FALSE);CHKERRQ(ierr);
24457b952d6SSatish Balay         }
24557b952d6SSatish Balay       }
24657b952d6SSatish Balay     }
24790f02eecSBarry Smith   }
2483a40ed3dSBarry Smith   PetscFunctionReturn(0);
24957b952d6SSatish Balay }
25057b952d6SSatish Balay 
2518ab52850SBarry Smith PETSC_STATIC_INLINE PetscErrorCode MatSetValuesBlocked_SeqBAIJ_Inlined(Mat A,PetscInt row,PetscInt col,const PetscScalar v[],InsertMode is,PetscInt orow,PetscInt ocol)
252880c6e6aSBarry Smith {
253880c6e6aSBarry Smith   Mat_SeqBAIJ       *a = (Mat_SeqBAIJ*)A->data;
2548ab52850SBarry Smith   PetscInt          *rp,low,high,t,ii,jj,nrow,i,rmax,N;
255880c6e6aSBarry Smith   PetscInt          *imax=a->imax,*ai=a->i,*ailen=a->ilen;
256880c6e6aSBarry Smith   PetscErrorCode    ierr;
2578ab52850SBarry Smith   PetscInt          *aj        =a->j,nonew=a->nonew,bs2=a->bs2,bs=A->rmap->bs;
258880c6e6aSBarry Smith   PetscBool         roworiented=a->roworiented;
259880c6e6aSBarry Smith   const PetscScalar *value     = v;
260880c6e6aSBarry Smith   MatScalar         *ap,*aa = a->a,*bap;
261880c6e6aSBarry Smith 
262880c6e6aSBarry Smith   PetscFunctionBegin;
263880c6e6aSBarry Smith   rp   = aj + ai[row];
264880c6e6aSBarry Smith   ap   = aa + bs2*ai[row];
265880c6e6aSBarry Smith   rmax = imax[row];
266880c6e6aSBarry Smith   nrow = ailen[row];
2678ab52850SBarry Smith   value = v;
2688ab52850SBarry Smith   low = 0;
2698ab52850SBarry Smith   high = nrow;
270880c6e6aSBarry Smith   while (high-low > 7) {
271880c6e6aSBarry Smith     t = (low+high)/2;
272880c6e6aSBarry Smith     if (rp[t] > col) high = t;
273880c6e6aSBarry Smith     else             low  = t;
274880c6e6aSBarry Smith   }
275880c6e6aSBarry Smith   for (i=low; i<high; i++) {
276880c6e6aSBarry Smith     if (rp[i] > col) break;
277880c6e6aSBarry Smith     if (rp[i] == col) {
278880c6e6aSBarry Smith       bap = ap +  bs2*i;
279880c6e6aSBarry Smith       if (roworiented) {
280880c6e6aSBarry Smith         if (is == ADD_VALUES) {
2818ab52850SBarry Smith           for (ii=0; ii<bs; ii++) {
282880c6e6aSBarry Smith             for (jj=ii; jj<bs2; jj+=bs) {
283880c6e6aSBarry Smith               bap[jj] += *value++;
284880c6e6aSBarry Smith             }
285880c6e6aSBarry Smith           }
286880c6e6aSBarry Smith         } else {
2878ab52850SBarry Smith           for (ii=0; ii<bs; ii++) {
288880c6e6aSBarry Smith             for (jj=ii; jj<bs2; jj+=bs) {
289880c6e6aSBarry Smith               bap[jj] = *value++;
290880c6e6aSBarry Smith             }
291880c6e6aSBarry Smith           }
292880c6e6aSBarry Smith         }
293880c6e6aSBarry Smith       } else {
294880c6e6aSBarry Smith         if (is == ADD_VALUES) {
2958ab52850SBarry Smith           for (ii=0; ii<bs; ii++,value+=bs) {
296880c6e6aSBarry Smith             for (jj=0; jj<bs; jj++) {
297880c6e6aSBarry Smith               bap[jj] += value[jj];
298880c6e6aSBarry Smith             }
299880c6e6aSBarry Smith             bap += bs;
300880c6e6aSBarry Smith           }
301880c6e6aSBarry Smith         } else {
3028ab52850SBarry Smith           for (ii=0; ii<bs; ii++,value+=bs) {
303880c6e6aSBarry Smith             for (jj=0; jj<bs; jj++) {
304880c6e6aSBarry Smith               bap[jj]  = value[jj];
305880c6e6aSBarry Smith             }
306880c6e6aSBarry Smith             bap += bs;
307880c6e6aSBarry Smith           }
308880c6e6aSBarry Smith         }
309880c6e6aSBarry Smith       }
310880c6e6aSBarry Smith       goto noinsert2;
311880c6e6aSBarry Smith     }
312880c6e6aSBarry Smith   }
313880c6e6aSBarry Smith   if (nonew == 1) goto noinsert2;
314880c6e6aSBarry Smith   if (nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new global block indexed nonzero block (%D, %D) in the matrix", orow, ocol);
315880c6e6aSBarry Smith   MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,row,col,rmax,aa,ai,aj,rp,ap,imax,nonew,MatScalar);
316880c6e6aSBarry Smith   N = nrow++ - 1; high++;
317880c6e6aSBarry Smith   /* shift up all the later entries in this row */
318580bdb30SBarry Smith   ierr = PetscArraymove(rp+i+1,rp+i,N-i+1);CHKERRQ(ierr);
319580bdb30SBarry Smith   ierr = PetscArraymove(ap+bs2*(i+1),ap+bs2*i,bs2*(N-i+1));CHKERRQ(ierr);
320880c6e6aSBarry Smith   rp[i] = col;
321880c6e6aSBarry Smith   bap   = ap +  bs2*i;
322880c6e6aSBarry Smith   if (roworiented) {
3238ab52850SBarry Smith     for (ii=0; ii<bs; ii++) {
324880c6e6aSBarry Smith       for (jj=ii; jj<bs2; jj+=bs) {
325880c6e6aSBarry Smith         bap[jj] = *value++;
326880c6e6aSBarry Smith       }
327880c6e6aSBarry Smith     }
328880c6e6aSBarry Smith   } else {
3298ab52850SBarry Smith     for (ii=0; ii<bs; ii++) {
330880c6e6aSBarry Smith       for (jj=0; jj<bs; jj++) {
331880c6e6aSBarry Smith         *bap++ = *value++;
332880c6e6aSBarry Smith       }
333880c6e6aSBarry Smith     }
334880c6e6aSBarry Smith   }
335880c6e6aSBarry Smith   noinsert2:;
336880c6e6aSBarry Smith   ailen[row] = nrow;
337880c6e6aSBarry Smith   PetscFunctionReturn(0);
338880c6e6aSBarry Smith }
339880c6e6aSBarry Smith 
3408ab52850SBarry Smith /*
3418ab52850SBarry Smith     This routine should be optimized so that the block copy at ** Here a copy is required ** below is not needed
3428ab52850SBarry Smith     by passing additional stride information into the MatSetValuesBlocked_SeqBAIJ_Inlined() routine
3438ab52850SBarry Smith */
34497e5c40aSBarry Smith PetscErrorCode MatSetValuesBlocked_MPIBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv)
345ab26458aSBarry Smith {
346ab26458aSBarry Smith   Mat_MPIBAIJ       *baij = (Mat_MPIBAIJ*)mat->data;
347dd6ea824SBarry Smith   const PetscScalar *value;
348f15d580aSBarry Smith   MatScalar         *barray     = baij->barray;
349ace3abfcSBarry Smith   PetscBool         roworiented = baij->roworiented;
350dfbe8321SBarry Smith   PetscErrorCode    ierr;
351899cda47SBarry Smith   PetscInt          i,j,ii,jj,row,col,rstart=baij->rstartbs;
352899cda47SBarry Smith   PetscInt          rend=baij->rendbs,cstart=baij->cstartbs,stepval;
353d0f46423SBarry Smith   PetscInt          cend=baij->cendbs,bs=mat->rmap->bs,bs2=baij->bs2;
354ab26458aSBarry Smith 
355b16ae2b1SBarry Smith   PetscFunctionBegin;
35630793edcSSatish Balay   if (!barray) {
357785e854fSJed Brown     ierr         = PetscMalloc1(bs2,&barray);CHKERRQ(ierr);
35882502324SSatish Balay     baij->barray = barray;
35930793edcSSatish Balay   }
36030793edcSSatish Balay 
36126fbe8dcSKarl Rupp   if (roworiented) stepval = (n-1)*bs;
36226fbe8dcSKarl Rupp   else stepval = (m-1)*bs;
36326fbe8dcSKarl Rupp 
364ab26458aSBarry Smith   for (i=0; i<m; i++) {
3655ef9f2a5SBarry Smith     if (im[i] < 0) continue;
366cf9c20a2SJed Brown     if (PetscUnlikelyDebug(im[i] >= baij->Mbs)) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Block indexed row too large %D max %D",im[i],baij->Mbs-1);
367ab26458aSBarry Smith     if (im[i] >= rstart && im[i] < rend) {
368ab26458aSBarry Smith       row = im[i] - rstart;
369ab26458aSBarry Smith       for (j=0; j<n; j++) {
37015b57d14SSatish Balay         /* If NumCol = 1 then a copy is not required */
37115b57d14SSatish Balay         if ((roworiented) && (n == 1)) {
372f15d580aSBarry Smith           barray = (MatScalar*)v + i*bs2;
37315b57d14SSatish Balay         } else if ((!roworiented) && (m == 1)) {
374f15d580aSBarry Smith           barray = (MatScalar*)v + j*bs2;
37515b57d14SSatish Balay         } else { /* Here a copy is required */
376ab26458aSBarry Smith           if (roworiented) {
37753ef36baSBarry Smith             value = v + (i*(stepval+bs) + j)*bs;
378ab26458aSBarry Smith           } else {
37953ef36baSBarry Smith             value = v + (j*(stepval+bs) + i)*bs;
380abef11f7SSatish Balay           }
38153ef36baSBarry Smith           for (ii=0; ii<bs; ii++,value+=bs+stepval) {
38226fbe8dcSKarl Rupp             for (jj=0; jj<bs; jj++) barray[jj] = value[jj];
38353ef36baSBarry Smith             barray += bs;
38447513183SBarry Smith           }
38530793edcSSatish Balay           barray -= bs2;
38615b57d14SSatish Balay         }
387abef11f7SSatish Balay 
388abef11f7SSatish Balay         if (in[j] >= cstart && in[j] < cend) {
389abef11f7SSatish Balay           col  = in[j] - cstart;
3908ab52850SBarry Smith           ierr = MatSetValuesBlocked_SeqBAIJ_Inlined(baij->A,row,col,barray,addv,im[i],in[j]);CHKERRQ(ierr);
39126fbe8dcSKarl Rupp         } else if (in[j] < 0) continue;
392*9245e749SBarry Smith         else if (PetscUnlikelyDebug(in[j] >= baij->Nbs)) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Block indexed column too large %D max %D",in[j],baij->Nbs-1);
393*9245e749SBarry Smith         else {
394ab26458aSBarry Smith           if (mat->was_assembled) {
395ab26458aSBarry Smith             if (!baij->colmap) {
396ab9863d7SBarry Smith               ierr = MatCreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
397ab26458aSBarry Smith             }
398a5eb4965SSatish Balay 
3992515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
400aa482453SBarry Smith #if defined(PETSC_USE_CTABLE)
401b24ad042SBarry Smith             { PetscInt data;
4020f5bd95cSBarry Smith               ierr = PetscTableFind(baij->colmap,in[j]+1,&data);CHKERRQ(ierr);
403e32f2f54SBarry Smith               if ((data - 1) % bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap");
404fa46199cSSatish Balay             }
40548e59246SSatish Balay #else
406e32f2f54SBarry Smith             if ((baij->colmap[in[j]] - 1) % bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap");
407a5eb4965SSatish Balay #endif
40848e59246SSatish Balay #endif
409aa482453SBarry Smith #if defined(PETSC_USE_CTABLE)
4100f5bd95cSBarry Smith             ierr = PetscTableFind(baij->colmap,in[j]+1,&col);CHKERRQ(ierr);
411fa46199cSSatish Balay             col  = (col - 1)/bs;
41248e59246SSatish Balay #else
413a5eb4965SSatish Balay             col = (baij->colmap[in[j]] - 1)/bs;
41448e59246SSatish Balay #endif
4150e9bae81SBarry Smith             if (col < 0 && !((Mat_SeqBAIJ*)(baij->B->data))->nonew) {
416ab9863d7SBarry Smith               ierr = MatDisAssemble_MPIBAIJ(mat);CHKERRQ(ierr);
417ab26458aSBarry Smith               col  =  in[j];
418bb003d0fSBarry Smith             } else if (col < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new blocked indexed nonzero block (%D, %D) into matrix",im[i],in[j]);
419db4deed7SKarl Rupp           } else col = in[j];
4208ab52850SBarry Smith           ierr = MatSetValuesBlocked_SeqBAIJ_Inlined(baij->B,row,col,barray,addv,im[i],in[j]);CHKERRQ(ierr);
421ab26458aSBarry Smith         }
422ab26458aSBarry Smith       }
423d64ed03dSBarry Smith     } else {
424bb003d0fSBarry Smith       if (mat->nooffprocentries) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Setting off process block indexed row %D even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set",im[i]);
425ab26458aSBarry Smith       if (!baij->donotstash) {
426ff2fd236SBarry Smith         if (roworiented) {
4276fa18ffdSBarry Smith           ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
428ff2fd236SBarry Smith         } else {
4296fa18ffdSBarry Smith           ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
430ff2fd236SBarry Smith         }
431abef11f7SSatish Balay       }
432ab26458aSBarry Smith     }
433ab26458aSBarry Smith   }
4343a40ed3dSBarry Smith   PetscFunctionReturn(0);
435ab26458aSBarry Smith }
4366fa18ffdSBarry Smith 
4370bdbc534SSatish Balay #define HASH_KEY 0.6180339887
438b24ad042SBarry Smith #define HASH(size,key,tmp) (tmp = (key)*HASH_KEY,(PetscInt)((size)*(tmp-(PetscInt)tmp)))
439b24ad042SBarry Smith /* #define HASH(size,key) ((PetscInt)((size)*fmod(((key)*HASH_KEY),1))) */
440b24ad042SBarry Smith /* #define HASH(size,key,tmp) ((PetscInt)((size)*fmod(((key)*HASH_KEY),1))) */
44197e5c40aSBarry Smith PetscErrorCode MatSetValues_MPIBAIJ_HT(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv)
4420bdbc534SSatish Balay {
4430bdbc534SSatish Balay   Mat_MPIBAIJ    *baij       = (Mat_MPIBAIJ*)mat->data;
444ace3abfcSBarry Smith   PetscBool      roworiented = baij->roworiented;
445dfbe8321SBarry Smith   PetscErrorCode ierr;
446b24ad042SBarry Smith   PetscInt       i,j,row,col;
447d0f46423SBarry Smith   PetscInt       rstart_orig=mat->rmap->rstart;
448d0f46423SBarry Smith   PetscInt       rend_orig  =mat->rmap->rend,Nbs=baij->Nbs;
449d0f46423SBarry Smith   PetscInt       h1,key,size=baij->ht_size,bs=mat->rmap->bs,*HT=baij->ht,idx;
450329f5518SBarry Smith   PetscReal      tmp;
4513eda8832SBarry Smith   MatScalar      **HD = baij->hd,value;
452b24ad042SBarry Smith   PetscInt       total_ct=baij->ht_total_ct,insert_ct=baij->ht_insert_ct;
4530bdbc534SSatish Balay 
4540bdbc534SSatish Balay   PetscFunctionBegin;
4550bdbc534SSatish Balay   for (i=0; i<m; i++) {
45676bd3646SJed Brown     if (PetscDefined(USE_DEBUG)) {
457e32f2f54SBarry Smith       if (im[i] < 0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative row");
458e32f2f54SBarry Smith       if (im[i] >= mat->rmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],mat->rmap->N-1);
45976bd3646SJed Brown     }
4600bdbc534SSatish Balay     row = im[i];
461c2760754SSatish Balay     if (row >= rstart_orig && row < rend_orig) {
4620bdbc534SSatish Balay       for (j=0; j<n; j++) {
4630bdbc534SSatish Balay         col = in[j];
464db4deed7SKarl Rupp         if (roworiented) value = v[i*n+j];
465db4deed7SKarl Rupp         else             value = v[i+j*m];
466b24ad042SBarry Smith         /* Look up PetscInto the Hash Table */
467c2760754SSatish Balay         key = (row/bs)*Nbs+(col/bs)+1;
468c2760754SSatish Balay         h1  = HASH(size,key,tmp);
4690bdbc534SSatish Balay 
470c2760754SSatish Balay 
471c2760754SSatish Balay         idx = h1;
47276bd3646SJed Brown         if (PetscDefined(USE_DEBUG)) {
473187ce0cbSSatish Balay           insert_ct++;
474187ce0cbSSatish Balay           total_ct++;
475187ce0cbSSatish Balay           if (HT[idx] != key) {
476187ce0cbSSatish Balay             for (idx=h1; (idx<size) && (HT[idx]!=key); idx++,total_ct++) ;
477187ce0cbSSatish Balay             if (idx == size) {
478187ce0cbSSatish Balay               for (idx=0; (idx<h1) && (HT[idx]!=key); idx++,total_ct++) ;
479f23aa3ddSBarry Smith               if (idx == h1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"(%D,%D) has no entry in the hash table", row, col);
480187ce0cbSSatish Balay             }
481187ce0cbSSatish Balay           }
48276bd3646SJed Brown         } else if (HT[idx] != key) {
483c2760754SSatish Balay           for (idx=h1; (idx<size) && (HT[idx]!=key); idx++) ;
484c2760754SSatish Balay           if (idx == size) {
485c2760754SSatish Balay             for (idx=0; (idx<h1) && (HT[idx]!=key); idx++) ;
486f23aa3ddSBarry Smith             if (idx == h1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"(%D,%D) has no entry in the hash table", row, col);
487c2760754SSatish Balay           }
488c2760754SSatish Balay         }
489c2760754SSatish Balay         /* A HASH table entry is found, so insert the values at the correct address */
490c2760754SSatish Balay         if (addv == ADD_VALUES) *(HD[idx]+ (col % bs)*bs + (row % bs)) += value;
491c2760754SSatish Balay         else                    *(HD[idx]+ (col % bs)*bs + (row % bs))  = value;
4920bdbc534SSatish Balay       }
49326fbe8dcSKarl Rupp     } else if (!baij->donotstash) {
494ff2fd236SBarry Smith       if (roworiented) {
495b400d20cSBarry Smith         ierr = MatStashValuesRow_Private(&mat->stash,im[i],n,in,v+i*n,PETSC_FALSE);CHKERRQ(ierr);
496ff2fd236SBarry Smith       } else {
497b400d20cSBarry Smith         ierr = MatStashValuesCol_Private(&mat->stash,im[i],n,in,v+i,m,PETSC_FALSE);CHKERRQ(ierr);
4980bdbc534SSatish Balay       }
4990bdbc534SSatish Balay     }
5000bdbc534SSatish Balay   }
50176bd3646SJed Brown   if (PetscDefined(USE_DEBUG)) {
502abf3b562SBarry Smith     baij->ht_total_ct  += total_ct;
503abf3b562SBarry Smith     baij->ht_insert_ct += insert_ct;
50476bd3646SJed Brown   }
5050bdbc534SSatish Balay   PetscFunctionReturn(0);
5060bdbc534SSatish Balay }
5070bdbc534SSatish Balay 
50897e5c40aSBarry Smith PetscErrorCode MatSetValuesBlocked_MPIBAIJ_HT(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv)
5090bdbc534SSatish Balay {
5100bdbc534SSatish Balay   Mat_MPIBAIJ       *baij       = (Mat_MPIBAIJ*)mat->data;
511ace3abfcSBarry Smith   PetscBool         roworiented = baij->roworiented;
512dfbe8321SBarry Smith   PetscErrorCode    ierr;
513b24ad042SBarry Smith   PetscInt          i,j,ii,jj,row,col;
514899cda47SBarry Smith   PetscInt          rstart=baij->rstartbs;
515d0f46423SBarry Smith   PetscInt          rend  =mat->rmap->rend,stepval,bs=mat->rmap->bs,bs2=baij->bs2,nbs2=n*bs2;
516b24ad042SBarry Smith   PetscInt          h1,key,size=baij->ht_size,idx,*HT=baij->ht,Nbs=baij->Nbs;
517329f5518SBarry Smith   PetscReal         tmp;
5183eda8832SBarry Smith   MatScalar         **HD = baij->hd,*baij_a;
519dd6ea824SBarry Smith   const PetscScalar *v_t,*value;
520b24ad042SBarry Smith   PetscInt          total_ct=baij->ht_total_ct,insert_ct=baij->ht_insert_ct;
5210bdbc534SSatish Balay 
522d0a41580SSatish Balay   PetscFunctionBegin;
52326fbe8dcSKarl Rupp   if (roworiented) stepval = (n-1)*bs;
52426fbe8dcSKarl Rupp   else stepval = (m-1)*bs;
52526fbe8dcSKarl Rupp 
5260bdbc534SSatish Balay   for (i=0; i<m; i++) {
52776bd3646SJed Brown     if (PetscDefined(USE_DEBUG)) {
528e32f2f54SBarry Smith       if (im[i] < 0) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %D",im[i]);
529e32f2f54SBarry Smith       if (im[i] >= baij->Mbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],baij->Mbs-1);
53076bd3646SJed Brown     }
5310bdbc534SSatish Balay     row = im[i];
532ab715e2cSSatish Balay     v_t = v + i*nbs2;
533c2760754SSatish Balay     if (row >= rstart && row < rend) {
5340bdbc534SSatish Balay       for (j=0; j<n; j++) {
5350bdbc534SSatish Balay         col = in[j];
5360bdbc534SSatish Balay 
5370bdbc534SSatish Balay         /* Look up into the Hash Table */
538c2760754SSatish Balay         key = row*Nbs+col+1;
539c2760754SSatish Balay         h1  = HASH(size,key,tmp);
5400bdbc534SSatish Balay 
541c2760754SSatish Balay         idx = h1;
54276bd3646SJed Brown         if (PetscDefined(USE_DEBUG)) {
543187ce0cbSSatish Balay           total_ct++;
544187ce0cbSSatish Balay           insert_ct++;
545187ce0cbSSatish Balay           if (HT[idx] != key) {
546187ce0cbSSatish Balay             for (idx=h1; (idx<size) && (HT[idx]!=key); idx++,total_ct++) ;
547187ce0cbSSatish Balay             if (idx == size) {
548187ce0cbSSatish Balay               for (idx=0; (idx<h1) && (HT[idx]!=key); idx++,total_ct++) ;
549f23aa3ddSBarry Smith               if (idx == h1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"(%D,%D) has no entry in the hash table", row, col);
550187ce0cbSSatish Balay             }
551187ce0cbSSatish Balay           }
55276bd3646SJed Brown         } else if (HT[idx] != key) {
553c2760754SSatish Balay           for (idx=h1; (idx<size) && (HT[idx]!=key); idx++) ;
554c2760754SSatish Balay           if (idx == size) {
555c2760754SSatish Balay             for (idx=0; (idx<h1) && (HT[idx]!=key); idx++) ;
556f23aa3ddSBarry Smith             if (idx == h1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"(%D,%D) has no entry in the hash table", row, col);
557c2760754SSatish Balay           }
558c2760754SSatish Balay         }
559c2760754SSatish Balay         baij_a = HD[idx];
5600bdbc534SSatish Balay         if (roworiented) {
561c2760754SSatish Balay           /*value = v + i*(stepval+bs)*bs + j*bs;*/
562187ce0cbSSatish Balay           /* value = v + (i*(stepval+bs)+j)*bs; */
563187ce0cbSSatish Balay           value = v_t;
564187ce0cbSSatish Balay           v_t  += bs;
565fef45726SSatish Balay           if (addv == ADD_VALUES) {
566c2760754SSatish Balay             for (ii=0; ii<bs; ii++,value+=stepval) {
567c2760754SSatish Balay               for (jj=ii; jj<bs2; jj+=bs) {
568fef45726SSatish Balay                 baij_a[jj] += *value++;
569b4cc0f5aSSatish Balay               }
570b4cc0f5aSSatish Balay             }
571fef45726SSatish Balay           } else {
572c2760754SSatish Balay             for (ii=0; ii<bs; ii++,value+=stepval) {
573c2760754SSatish Balay               for (jj=ii; jj<bs2; jj+=bs) {
574fef45726SSatish Balay                 baij_a[jj] = *value++;
575fef45726SSatish Balay               }
576fef45726SSatish Balay             }
577fef45726SSatish Balay           }
5780bdbc534SSatish Balay         } else {
5790bdbc534SSatish Balay           value = v + j*(stepval+bs)*bs + i*bs;
580fef45726SSatish Balay           if (addv == ADD_VALUES) {
581b4cc0f5aSSatish Balay             for (ii=0; ii<bs; ii++,value+=stepval,baij_a+=bs) {
5820bdbc534SSatish Balay               for (jj=0; jj<bs; jj++) {
583fef45726SSatish Balay                 baij_a[jj] += *value++;
584fef45726SSatish Balay               }
585fef45726SSatish Balay             }
586fef45726SSatish Balay           } else {
587fef45726SSatish Balay             for (ii=0; ii<bs; ii++,value+=stepval,baij_a+=bs) {
588fef45726SSatish Balay               for (jj=0; jj<bs; jj++) {
589fef45726SSatish Balay                 baij_a[jj] = *value++;
590fef45726SSatish Balay               }
591b4cc0f5aSSatish Balay             }
5920bdbc534SSatish Balay           }
5930bdbc534SSatish Balay         }
5940bdbc534SSatish Balay       }
5950bdbc534SSatish Balay     } else {
5960bdbc534SSatish Balay       if (!baij->donotstash) {
5970bdbc534SSatish Balay         if (roworiented) {
5988798bf22SSatish Balay           ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
5990bdbc534SSatish Balay         } else {
6008798bf22SSatish Balay           ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
6010bdbc534SSatish Balay         }
6020bdbc534SSatish Balay       }
6030bdbc534SSatish Balay     }
6040bdbc534SSatish Balay   }
60576bd3646SJed Brown   if (PetscDefined(USE_DEBUG)) {
606abf3b562SBarry Smith     baij->ht_total_ct  += total_ct;
607abf3b562SBarry Smith     baij->ht_insert_ct += insert_ct;
60876bd3646SJed Brown   }
6090bdbc534SSatish Balay   PetscFunctionReturn(0);
6100bdbc534SSatish Balay }
611133cdb44SSatish Balay 
612b24ad042SBarry Smith PetscErrorCode MatGetValues_MPIBAIJ(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[])
613d6de1c52SSatish Balay {
614d6de1c52SSatish Balay   Mat_MPIBAIJ    *baij = (Mat_MPIBAIJ*)mat->data;
6156849ba73SBarry Smith   PetscErrorCode ierr;
616d0f46423SBarry Smith   PetscInt       bs       = mat->rmap->bs,i,j,bsrstart = mat->rmap->rstart,bsrend = mat->rmap->rend;
617d0f46423SBarry Smith   PetscInt       bscstart = mat->cmap->rstart,bscend = mat->cmap->rend,row,col,data;
618d6de1c52SSatish Balay 
619133cdb44SSatish Balay   PetscFunctionBegin;
620d6de1c52SSatish Balay   for (i=0; i<m; i++) {
621e32f2f54SBarry Smith     if (idxm[i] < 0) continue; /* SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %D",idxm[i]);*/
622e32f2f54SBarry Smith     if (idxm[i] >= mat->rmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",idxm[i],mat->rmap->N-1);
623d6de1c52SSatish Balay     if (idxm[i] >= bsrstart && idxm[i] < bsrend) {
624d6de1c52SSatish Balay       row = idxm[i] - bsrstart;
625d6de1c52SSatish Balay       for (j=0; j<n; j++) {
626e32f2f54SBarry Smith         if (idxn[j] < 0) continue; /* SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative column: %D",idxn[j]); */
627e32f2f54SBarry Smith         if (idxn[j] >= mat->cmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",idxn[j],mat->cmap->N-1);
628d6de1c52SSatish Balay         if (idxn[j] >= bscstart && idxn[j] < bscend) {
629d6de1c52SSatish Balay           col  = idxn[j] - bscstart;
63098dd23e9SBarry Smith           ierr = MatGetValues_SeqBAIJ(baij->A,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr);
631d64ed03dSBarry Smith         } else {
632905e6a2fSBarry Smith           if (!baij->colmap) {
633ab9863d7SBarry Smith             ierr = MatCreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
634905e6a2fSBarry Smith           }
635aa482453SBarry Smith #if defined(PETSC_USE_CTABLE)
6360f5bd95cSBarry Smith           ierr = PetscTableFind(baij->colmap,idxn[j]/bs+1,&data);CHKERRQ(ierr);
637fa46199cSSatish Balay           data--;
63848e59246SSatish Balay #else
63948e59246SSatish Balay           data = baij->colmap[idxn[j]/bs]-1;
64048e59246SSatish Balay #endif
64148e59246SSatish Balay           if ((data < 0) || (baij->garray[data/bs] != idxn[j]/bs)) *(v+i*n+j) = 0.0;
642d9d09a02SSatish Balay           else {
64348e59246SSatish Balay             col  = data + idxn[j]%bs;
64498dd23e9SBarry Smith             ierr = MatGetValues_SeqBAIJ(baij->B,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr);
645d6de1c52SSatish Balay           }
646d6de1c52SSatish Balay         }
647d6de1c52SSatish Balay       }
648f23aa3ddSBarry Smith     } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local values currently supported");
649d6de1c52SSatish Balay   }
6503a40ed3dSBarry Smith   PetscFunctionReturn(0);
651d6de1c52SSatish Balay }
652d6de1c52SSatish Balay 
653dfbe8321SBarry Smith PetscErrorCode MatNorm_MPIBAIJ(Mat mat,NormType type,PetscReal *nrm)
654d6de1c52SSatish Balay {
655d6de1c52SSatish Balay   Mat_MPIBAIJ    *baij = (Mat_MPIBAIJ*)mat->data;
656d6de1c52SSatish Balay   Mat_SeqBAIJ    *amat = (Mat_SeqBAIJ*)baij->A->data,*bmat = (Mat_SeqBAIJ*)baij->B->data;
657dfbe8321SBarry Smith   PetscErrorCode ierr;
658d0f46423SBarry Smith   PetscInt       i,j,bs2=baij->bs2,bs=baij->A->rmap->bs,nz,row,col;
659329f5518SBarry Smith   PetscReal      sum = 0.0;
6603eda8832SBarry Smith   MatScalar      *v;
661d6de1c52SSatish Balay 
662d64ed03dSBarry Smith   PetscFunctionBegin;
663d6de1c52SSatish Balay   if (baij->size == 1) {
664064f8208SBarry Smith     ierr =  MatNorm(baij->A,type,nrm);CHKERRQ(ierr);
665d6de1c52SSatish Balay   } else {
666d6de1c52SSatish Balay     if (type == NORM_FROBENIUS) {
667d6de1c52SSatish Balay       v  = amat->a;
6688a62d963SHong Zhang       nz = amat->nz*bs2;
6698a62d963SHong Zhang       for (i=0; i<nz; i++) {
670329f5518SBarry Smith         sum += PetscRealPart(PetscConj(*v)*(*v)); v++;
671d6de1c52SSatish Balay       }
672d6de1c52SSatish Balay       v  = bmat->a;
6738a62d963SHong Zhang       nz = bmat->nz*bs2;
6748a62d963SHong Zhang       for (i=0; i<nz; i++) {
675329f5518SBarry Smith         sum += PetscRealPart(PetscConj(*v)*(*v)); v++;
676d6de1c52SSatish Balay       }
677b2566f29SBarry Smith       ierr = MPIU_Allreduce(&sum,nrm,1,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
6788f1a2a5eSBarry Smith       *nrm = PetscSqrtReal(*nrm);
6798a62d963SHong Zhang     } else if (type == NORM_1) { /* max column sum */
6808a62d963SHong Zhang       PetscReal *tmp,*tmp2;
681899cda47SBarry Smith       PetscInt  *jj,*garray=baij->garray,cstart=baij->rstartbs;
6828f8f2f0dSBarry Smith       ierr = PetscCalloc1(mat->cmap->N,&tmp);CHKERRQ(ierr);
683857a15f1SBarry Smith       ierr = PetscMalloc1(mat->cmap->N,&tmp2);CHKERRQ(ierr);
6848a62d963SHong Zhang       v    = amat->a; jj = amat->j;
6858a62d963SHong Zhang       for (i=0; i<amat->nz; i++) {
6868a62d963SHong Zhang         for (j=0; j<bs; j++) {
6878a62d963SHong Zhang           col = bs*(cstart + *jj) + j; /* column index */
6888a62d963SHong Zhang           for (row=0; row<bs; row++) {
6898a62d963SHong Zhang             tmp[col] += PetscAbsScalar(*v);  v++;
6908a62d963SHong Zhang           }
6918a62d963SHong Zhang         }
6928a62d963SHong Zhang         jj++;
6938a62d963SHong Zhang       }
6948a62d963SHong Zhang       v = bmat->a; jj = bmat->j;
6958a62d963SHong Zhang       for (i=0; i<bmat->nz; i++) {
6968a62d963SHong Zhang         for (j=0; j<bs; j++) {
6978a62d963SHong Zhang           col = bs*garray[*jj] + j;
6988a62d963SHong Zhang           for (row=0; row<bs; row++) {
6998a62d963SHong Zhang             tmp[col] += PetscAbsScalar(*v); v++;
7008a62d963SHong Zhang           }
7018a62d963SHong Zhang         }
7028a62d963SHong Zhang         jj++;
7038a62d963SHong Zhang       }
704b2566f29SBarry Smith       ierr = MPIU_Allreduce(tmp,tmp2,mat->cmap->N,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
7058a62d963SHong Zhang       *nrm = 0.0;
706d0f46423SBarry Smith       for (j=0; j<mat->cmap->N; j++) {
7078a62d963SHong Zhang         if (tmp2[j] > *nrm) *nrm = tmp2[j];
7088a62d963SHong Zhang       }
709857a15f1SBarry Smith       ierr = PetscFree(tmp);CHKERRQ(ierr);
710857a15f1SBarry Smith       ierr = PetscFree(tmp2);CHKERRQ(ierr);
7118a62d963SHong Zhang     } else if (type == NORM_INFINITY) { /* max row sum */
712577dd1f9SKris Buschelman       PetscReal *sums;
713785e854fSJed Brown       ierr = PetscMalloc1(bs,&sums);CHKERRQ(ierr);
7148a62d963SHong Zhang       sum  = 0.0;
7158a62d963SHong Zhang       for (j=0; j<amat->mbs; j++) {
7168a62d963SHong Zhang         for (row=0; row<bs; row++) sums[row] = 0.0;
7178a62d963SHong Zhang         v  = amat->a + bs2*amat->i[j];
7188a62d963SHong Zhang         nz = amat->i[j+1]-amat->i[j];
7198a62d963SHong Zhang         for (i=0; i<nz; i++) {
7208a62d963SHong Zhang           for (col=0; col<bs; col++) {
7218a62d963SHong Zhang             for (row=0; row<bs; row++) {
7228a62d963SHong Zhang               sums[row] += PetscAbsScalar(*v); v++;
7238a62d963SHong Zhang             }
7248a62d963SHong Zhang           }
7258a62d963SHong Zhang         }
7268a62d963SHong Zhang         v  = bmat->a + bs2*bmat->i[j];
7278a62d963SHong Zhang         nz = bmat->i[j+1]-bmat->i[j];
7288a62d963SHong Zhang         for (i=0; i<nz; i++) {
7298a62d963SHong Zhang           for (col=0; col<bs; col++) {
7308a62d963SHong Zhang             for (row=0; row<bs; row++) {
7318a62d963SHong Zhang               sums[row] += PetscAbsScalar(*v); v++;
7328a62d963SHong Zhang             }
7338a62d963SHong Zhang           }
7348a62d963SHong Zhang         }
7358a62d963SHong Zhang         for (row=0; row<bs; row++) {
7368a62d963SHong Zhang           if (sums[row] > sum) sum = sums[row];
7378a62d963SHong Zhang         }
7388a62d963SHong Zhang       }
739b2566f29SBarry Smith       ierr = MPIU_Allreduce(&sum,nrm,1,MPIU_REAL,MPIU_MAX,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
740577dd1f9SKris Buschelman       ierr = PetscFree(sums);CHKERRQ(ierr);
741ce94432eSBarry Smith     } else SETERRQ(PetscObjectComm((PetscObject)mat),PETSC_ERR_SUP,"No support for this norm yet");
742d64ed03dSBarry Smith   }
7433a40ed3dSBarry Smith   PetscFunctionReturn(0);
744d6de1c52SSatish Balay }
74557b952d6SSatish Balay 
746fef45726SSatish Balay /*
747fef45726SSatish Balay   Creates the hash table, and sets the table
748fef45726SSatish Balay   This table is created only once.
749fef45726SSatish Balay   If new entried need to be added to the matrix
750fef45726SSatish Balay   then the hash table has to be destroyed and
751fef45726SSatish Balay   recreated.
752fef45726SSatish Balay */
753dfbe8321SBarry Smith PetscErrorCode MatCreateHashTable_MPIBAIJ_Private(Mat mat,PetscReal factor)
754596b8d2eSBarry Smith {
755596b8d2eSBarry Smith   Mat_MPIBAIJ    *baij = (Mat_MPIBAIJ*)mat->data;
756596b8d2eSBarry Smith   Mat            A     = baij->A,B=baij->B;
757596b8d2eSBarry Smith   Mat_SeqBAIJ    *a    = (Mat_SeqBAIJ*)A->data,*b=(Mat_SeqBAIJ*)B->data;
758b24ad042SBarry Smith   PetscInt       i,j,k,nz=a->nz+b->nz,h1,*ai=a->i,*aj=a->j,*bi=b->i,*bj=b->j;
7596849ba73SBarry Smith   PetscErrorCode ierr;
760fca92195SBarry Smith   PetscInt       ht_size,bs2=baij->bs2,rstart=baij->rstartbs;
761899cda47SBarry Smith   PetscInt       cstart=baij->cstartbs,*garray=baij->garray,row,col,Nbs=baij->Nbs;
762b24ad042SBarry Smith   PetscInt       *HT,key;
7633eda8832SBarry Smith   MatScalar      **HD;
764329f5518SBarry Smith   PetscReal      tmp;
7656cf91177SBarry Smith #if defined(PETSC_USE_INFO)
766b24ad042SBarry Smith   PetscInt ct=0,max=0;
7674a15367fSSatish Balay #endif
768fef45726SSatish Balay 
769d64ed03dSBarry Smith   PetscFunctionBegin;
770fca92195SBarry Smith   if (baij->ht) PetscFunctionReturn(0);
771fef45726SSatish Balay 
772fca92195SBarry Smith   baij->ht_size = (PetscInt)(factor*nz);
773fca92195SBarry Smith   ht_size       = baij->ht_size;
7740bdbc534SSatish Balay 
775fef45726SSatish Balay   /* Allocate Memory for Hash Table */
7761795a4d1SJed Brown   ierr = PetscCalloc2(ht_size,&baij->hd,ht_size,&baij->ht);CHKERRQ(ierr);
777b9e4cc15SSatish Balay   HD   = baij->hd;
778a07cd24cSSatish Balay   HT   = baij->ht;
779b9e4cc15SSatish Balay 
780596b8d2eSBarry Smith   /* Loop Over A */
7810bdbc534SSatish Balay   for (i=0; i<a->mbs; i++) {
782596b8d2eSBarry Smith     for (j=ai[i]; j<ai[i+1]; j++) {
7830bdbc534SSatish Balay       row = i+rstart;
7840bdbc534SSatish Balay       col = aj[j]+cstart;
785596b8d2eSBarry Smith 
786187ce0cbSSatish Balay       key = row*Nbs + col + 1;
787fca92195SBarry Smith       h1  = HASH(ht_size,key,tmp);
788fca92195SBarry Smith       for (k=0; k<ht_size; k++) {
789fca92195SBarry Smith         if (!HT[(h1+k)%ht_size]) {
790fca92195SBarry Smith           HT[(h1+k)%ht_size] = key;
791fca92195SBarry Smith           HD[(h1+k)%ht_size] = a->a + j*bs2;
792596b8d2eSBarry Smith           break;
7936cf91177SBarry Smith #if defined(PETSC_USE_INFO)
794187ce0cbSSatish Balay         } else {
795187ce0cbSSatish Balay           ct++;
796187ce0cbSSatish Balay #endif
797596b8d2eSBarry Smith         }
798187ce0cbSSatish Balay       }
7996cf91177SBarry Smith #if defined(PETSC_USE_INFO)
800187ce0cbSSatish Balay       if (k> max) max = k;
801187ce0cbSSatish Balay #endif
802596b8d2eSBarry Smith     }
803596b8d2eSBarry Smith   }
804596b8d2eSBarry Smith   /* Loop Over B */
8050bdbc534SSatish Balay   for (i=0; i<b->mbs; i++) {
806596b8d2eSBarry Smith     for (j=bi[i]; j<bi[i+1]; j++) {
8070bdbc534SSatish Balay       row = i+rstart;
8080bdbc534SSatish Balay       col = garray[bj[j]];
809187ce0cbSSatish Balay       key = row*Nbs + col + 1;
810fca92195SBarry Smith       h1  = HASH(ht_size,key,tmp);
811fca92195SBarry Smith       for (k=0; k<ht_size; k++) {
812fca92195SBarry Smith         if (!HT[(h1+k)%ht_size]) {
813fca92195SBarry Smith           HT[(h1+k)%ht_size] = key;
814fca92195SBarry Smith           HD[(h1+k)%ht_size] = b->a + j*bs2;
815596b8d2eSBarry Smith           break;
8166cf91177SBarry Smith #if defined(PETSC_USE_INFO)
817187ce0cbSSatish Balay         } else {
818187ce0cbSSatish Balay           ct++;
819187ce0cbSSatish Balay #endif
820596b8d2eSBarry Smith         }
821187ce0cbSSatish Balay       }
8226cf91177SBarry Smith #if defined(PETSC_USE_INFO)
823187ce0cbSSatish Balay       if (k> max) max = k;
824187ce0cbSSatish Balay #endif
825596b8d2eSBarry Smith     }
826596b8d2eSBarry Smith   }
827596b8d2eSBarry Smith 
828596b8d2eSBarry Smith   /* Print Summary */
8296cf91177SBarry Smith #if defined(PETSC_USE_INFO)
830fca92195SBarry Smith   for (i=0,j=0; i<ht_size; i++) {
83126fbe8dcSKarl Rupp     if (HT[i]) j++;
832c38d4ed2SBarry Smith   }
8331e2582c4SBarry Smith   ierr = PetscInfo2(mat,"Average Search = %5.2f,max search = %D\n",(!j)? 0.0:((PetscReal)(ct+j))/j,max);CHKERRQ(ierr);
834187ce0cbSSatish Balay #endif
8353a40ed3dSBarry Smith   PetscFunctionReturn(0);
836596b8d2eSBarry Smith }
83757b952d6SSatish Balay 
838dfbe8321SBarry Smith PetscErrorCode MatAssemblyBegin_MPIBAIJ(Mat mat,MatAssemblyType mode)
839bbb85fb3SSatish Balay {
840bbb85fb3SSatish Balay   Mat_MPIBAIJ    *baij = (Mat_MPIBAIJ*)mat->data;
841dfbe8321SBarry Smith   PetscErrorCode ierr;
842b24ad042SBarry Smith   PetscInt       nstash,reallocs;
843bbb85fb3SSatish Balay 
844bbb85fb3SSatish Balay   PetscFunctionBegin;
84526fbe8dcSKarl Rupp   if (baij->donotstash || mat->nooffprocentries) PetscFunctionReturn(0);
846bbb85fb3SSatish Balay 
847d0f46423SBarry Smith   ierr = MatStashScatterBegin_Private(mat,&mat->stash,mat->rmap->range);CHKERRQ(ierr);
8481e2582c4SBarry Smith   ierr = MatStashScatterBegin_Private(mat,&mat->bstash,baij->rangebs);CHKERRQ(ierr);
8498798bf22SSatish Balay   ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr);
8501e2582c4SBarry Smith   ierr = PetscInfo2(mat,"Stash has %D entries,uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr);
85146680499SSatish Balay   ierr = MatStashGetInfo_Private(&mat->bstash,&nstash,&reallocs);CHKERRQ(ierr);
8521e2582c4SBarry Smith   ierr = PetscInfo2(mat,"Block-Stash has %D entries, uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr);
853bbb85fb3SSatish Balay   PetscFunctionReturn(0);
854bbb85fb3SSatish Balay }
855bbb85fb3SSatish Balay 
856dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_MPIBAIJ(Mat mat,MatAssemblyType mode)
857bbb85fb3SSatish Balay {
858bbb85fb3SSatish Balay   Mat_MPIBAIJ    *baij=(Mat_MPIBAIJ*)mat->data;
85991c97fd4SSatish Balay   Mat_SeqBAIJ    *a   =(Mat_SeqBAIJ*)baij->A->data;
8606849ba73SBarry Smith   PetscErrorCode ierr;
861b24ad042SBarry Smith   PetscInt       i,j,rstart,ncols,flg,bs2=baij->bs2;
862e44c0bd4SBarry Smith   PetscInt       *row,*col;
863ace3abfcSBarry Smith   PetscBool      r1,r2,r3,other_disassembled;
8643eda8832SBarry Smith   MatScalar      *val;
865b24ad042SBarry Smith   PetscMPIInt    n;
866bbb85fb3SSatish Balay 
867bbb85fb3SSatish Balay   PetscFunctionBegin;
8685fd66863SKarl Rupp   /* do not use 'b=(Mat_SeqBAIJ*)baij->B->data' as B can be reset in disassembly */
8694cb17eb5SBarry Smith   if (!baij->donotstash && !mat->nooffprocentries) {
870a2d1c673SSatish Balay     while (1) {
8718798bf22SSatish Balay       ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr);
872a2d1c673SSatish Balay       if (!flg) break;
873a2d1c673SSatish Balay 
874bbb85fb3SSatish Balay       for (i=0; i<n;) {
875bbb85fb3SSatish Balay         /* Now identify the consecutive vals belonging to the same row */
87626fbe8dcSKarl Rupp         for (j=i,rstart=row[j]; j<n; j++) {
87726fbe8dcSKarl Rupp           if (row[j] != rstart) break;
87826fbe8dcSKarl Rupp         }
879bbb85fb3SSatish Balay         if (j < n) ncols = j-i;
880bbb85fb3SSatish Balay         else       ncols = n-i;
881bbb85fb3SSatish Balay         /* Now assemble all these values with a single function call */
8824b4eb8d3SJed Brown         ierr = MatSetValues_MPIBAIJ(mat,1,row+i,ncols,col+i,val+i,mat->insertmode);CHKERRQ(ierr);
883bbb85fb3SSatish Balay         i    = j;
884bbb85fb3SSatish Balay       }
885bbb85fb3SSatish Balay     }
8868798bf22SSatish Balay     ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr);
887a2d1c673SSatish Balay     /* Now process the block-stash. Since the values are stashed column-oriented,
888a2d1c673SSatish Balay        set the roworiented flag to column oriented, and after MatSetValues()
889a2d1c673SSatish Balay        restore the original flags */
890a2d1c673SSatish Balay     r1 = baij->roworiented;
891a2d1c673SSatish Balay     r2 = a->roworiented;
89291c97fd4SSatish Balay     r3 = ((Mat_SeqBAIJ*)baij->B->data)->roworiented;
89326fbe8dcSKarl Rupp 
8947c922b88SBarry Smith     baij->roworiented = PETSC_FALSE;
8957c922b88SBarry Smith     a->roworiented    = PETSC_FALSE;
89626fbe8dcSKarl Rupp 
89791c97fd4SSatish Balay     (((Mat_SeqBAIJ*)baij->B->data))->roworiented = PETSC_FALSE; /* b->roworiented */
898a2d1c673SSatish Balay     while (1) {
8998798bf22SSatish Balay       ierr = MatStashScatterGetMesg_Private(&mat->bstash,&n,&row,&col,&val,&flg);CHKERRQ(ierr);
900a2d1c673SSatish Balay       if (!flg) break;
901a2d1c673SSatish Balay 
902a2d1c673SSatish Balay       for (i=0; i<n;) {
903a2d1c673SSatish Balay         /* Now identify the consecutive vals belonging to the same row */
90426fbe8dcSKarl Rupp         for (j=i,rstart=row[j]; j<n; j++) {
90526fbe8dcSKarl Rupp           if (row[j] != rstart) break;
90626fbe8dcSKarl Rupp         }
907a2d1c673SSatish Balay         if (j < n) ncols = j-i;
908a2d1c673SSatish Balay         else       ncols = n-i;
9094b4eb8d3SJed Brown         ierr = MatSetValuesBlocked_MPIBAIJ(mat,1,row+i,ncols,col+i,val+i*bs2,mat->insertmode);CHKERRQ(ierr);
910a2d1c673SSatish Balay         i    = j;
911a2d1c673SSatish Balay       }
912a2d1c673SSatish Balay     }
9138798bf22SSatish Balay     ierr = MatStashScatterEnd_Private(&mat->bstash);CHKERRQ(ierr);
91426fbe8dcSKarl Rupp 
915a2d1c673SSatish Balay     baij->roworiented = r1;
916a2d1c673SSatish Balay     a->roworiented    = r2;
91726fbe8dcSKarl Rupp 
91891c97fd4SSatish Balay     ((Mat_SeqBAIJ*)baij->B->data)->roworiented = r3; /* b->roworiented */
919bbb85fb3SSatish Balay   }
920bbb85fb3SSatish Balay 
921bbb85fb3SSatish Balay   ierr = MatAssemblyBegin(baij->A,mode);CHKERRQ(ierr);
922bbb85fb3SSatish Balay   ierr = MatAssemblyEnd(baij->A,mode);CHKERRQ(ierr);
923bbb85fb3SSatish Balay 
924bbb85fb3SSatish Balay   /* determine if any processor has disassembled, if so we must
925bbb85fb3SSatish Balay      also disassemble ourselfs, in order that we may reassemble. */
926bbb85fb3SSatish Balay   /*
927bbb85fb3SSatish Balay      if nonzero structure of submatrix B cannot change then we know that
928bbb85fb3SSatish Balay      no processor disassembled thus we can skip this stuff
929bbb85fb3SSatish Balay   */
930bbb85fb3SSatish Balay   if (!((Mat_SeqBAIJ*)baij->B->data)->nonew) {
931b2566f29SBarry Smith     ierr = MPIU_Allreduce(&mat->was_assembled,&other_disassembled,1,MPIU_BOOL,MPI_PROD,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
932bbb85fb3SSatish Balay     if (mat->was_assembled && !other_disassembled) {
933ab9863d7SBarry Smith       ierr = MatDisAssemble_MPIBAIJ(mat);CHKERRQ(ierr);
934bbb85fb3SSatish Balay     }
935bbb85fb3SSatish Balay   }
936bbb85fb3SSatish Balay 
937bbb85fb3SSatish Balay   if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) {
938bbb85fb3SSatish Balay     ierr = MatSetUpMultiply_MPIBAIJ(mat);CHKERRQ(ierr);
939bbb85fb3SSatish Balay   }
940bbb85fb3SSatish Balay   ierr = MatAssemblyBegin(baij->B,mode);CHKERRQ(ierr);
941bbb85fb3SSatish Balay   ierr = MatAssemblyEnd(baij->B,mode);CHKERRQ(ierr);
942bbb85fb3SSatish Balay 
9436cf91177SBarry Smith #if defined(PETSC_USE_INFO)
944bbb85fb3SSatish Balay   if (baij->ht && mode== MAT_FINAL_ASSEMBLY) {
945abf3b562SBarry Smith     ierr = PetscInfo1(mat,"Average Hash Table Search in MatSetValues = %5.2f\n",(double)((PetscReal)baij->ht_total_ct)/baij->ht_insert_ct);CHKERRQ(ierr);
94626fbe8dcSKarl Rupp 
947bbb85fb3SSatish Balay     baij->ht_total_ct  = 0;
948bbb85fb3SSatish Balay     baij->ht_insert_ct = 0;
949bbb85fb3SSatish Balay   }
950bbb85fb3SSatish Balay #endif
951bbb85fb3SSatish Balay   if (baij->ht_flag && !baij->ht && mode == MAT_FINAL_ASSEMBLY) {
952bbb85fb3SSatish Balay     ierr = MatCreateHashTable_MPIBAIJ_Private(mat,baij->ht_fact);CHKERRQ(ierr);
95326fbe8dcSKarl Rupp 
954bbb85fb3SSatish Balay     mat->ops->setvalues        = MatSetValues_MPIBAIJ_HT;
955bbb85fb3SSatish Balay     mat->ops->setvaluesblocked = MatSetValuesBlocked_MPIBAIJ_HT;
956bbb85fb3SSatish Balay   }
957bbb85fb3SSatish Balay 
958fca92195SBarry Smith   ierr = PetscFree2(baij->rowvalues,baij->rowindices);CHKERRQ(ierr);
95926fbe8dcSKarl Rupp 
960606d414cSSatish Balay   baij->rowvalues = 0;
9614f9cfa9eSBarry Smith 
9624f9cfa9eSBarry Smith   /* if no new nonzero locations are allowed in matrix then only set the matrix state the first time through */
9634f9cfa9eSBarry Smith   if ((!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) || !((Mat_SeqBAIJ*)(baij->A->data))->nonew) {
964e56f5c9eSBarry Smith     PetscObjectState state = baij->A->nonzerostate + baij->B->nonzerostate;
965b2566f29SBarry Smith     ierr = MPIU_Allreduce(&state,&mat->nonzerostate,1,MPIU_INT64,MPI_SUM,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
966e56f5c9eSBarry Smith   }
967bbb85fb3SSatish Balay   PetscFunctionReturn(0);
968bbb85fb3SSatish Balay }
96957b952d6SSatish Balay 
9707da1fb6eSBarry Smith extern PetscErrorCode MatView_SeqBAIJ(Mat,PetscViewer);
9719804daf3SBarry Smith #include <petscdraw.h>
9726849ba73SBarry Smith static PetscErrorCode MatView_MPIBAIJ_ASCIIorDraworSocket(Mat mat,PetscViewer viewer)
97357b952d6SSatish Balay {
97457b952d6SSatish Balay   Mat_MPIBAIJ       *baij = (Mat_MPIBAIJ*)mat->data;
975dfbe8321SBarry Smith   PetscErrorCode    ierr;
9767da1fb6eSBarry Smith   PetscMPIInt       rank = baij->rank;
977d0f46423SBarry Smith   PetscInt          bs   = mat->rmap->bs;
978ace3abfcSBarry Smith   PetscBool         iascii,isdraw;
979b0a32e0cSBarry Smith   PetscViewer       sviewer;
980f3ef73ceSBarry Smith   PetscViewerFormat format;
98157b952d6SSatish Balay 
982d64ed03dSBarry Smith   PetscFunctionBegin;
983251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr);
984251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr);
98532077d6dSBarry Smith   if (iascii) {
986b0a32e0cSBarry Smith     ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr);
987456192e2SBarry Smith     if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) {
9884e220ebcSLois Curfman McInnes       MatInfo info;
989ce94432eSBarry Smith       ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)mat),&rank);CHKERRQ(ierr);
990d41123aaSBarry Smith       ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr);
9911575c14dSBarry Smith       ierr = PetscViewerASCIIPushSynchronized(viewer);CHKERRQ(ierr);
992b1e9c6f1SBarry Smith       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Local rows %D nz %D nz alloced %D bs %D mem %g\n",
993b1e9c6f1SBarry Smith                                                 rank,mat->rmap->n,(PetscInt)info.nz_used,(PetscInt)info.nz_allocated,mat->rmap->bs,(double)info.memory);CHKERRQ(ierr);
994d132466eSBarry Smith       ierr = MatGetInfo(baij->A,MAT_LOCAL,&info);CHKERRQ(ierr);
995e6dd01d4SJed Brown       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] on-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used);CHKERRQ(ierr);
996d132466eSBarry Smith       ierr = MatGetInfo(baij->B,MAT_LOCAL,&info);CHKERRQ(ierr);
997e6dd01d4SJed Brown       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] off-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used);CHKERRQ(ierr);
998b0a32e0cSBarry Smith       ierr = PetscViewerFlush(viewer);CHKERRQ(ierr);
9991575c14dSBarry Smith       ierr = PetscViewerASCIIPopSynchronized(viewer);CHKERRQ(ierr);
100007d81ca4SBarry Smith       ierr = PetscViewerASCIIPrintf(viewer,"Information on VecScatter used in matrix-vector product: \n");CHKERRQ(ierr);
100157b952d6SSatish Balay       ierr = VecScatterView(baij->Mvctx,viewer);CHKERRQ(ierr);
10023a40ed3dSBarry Smith       PetscFunctionReturn(0);
1003fb9695e5SSatish Balay     } else if (format == PETSC_VIEWER_ASCII_INFO) {
100477431f27SBarry Smith       ierr = PetscViewerASCIIPrintf(viewer,"  block size is %D\n",bs);CHKERRQ(ierr);
10053a40ed3dSBarry Smith       PetscFunctionReturn(0);
100604929863SHong Zhang     } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) {
100704929863SHong Zhang       PetscFunctionReturn(0);
100857b952d6SSatish Balay     }
100957b952d6SSatish Balay   }
101057b952d6SSatish Balay 
10110f5bd95cSBarry Smith   if (isdraw) {
1012b0a32e0cSBarry Smith     PetscDraw draw;
1013ace3abfcSBarry Smith     PetscBool isnull;
1014b0a32e0cSBarry Smith     ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr);
101545f3bb6eSLisandro Dalcin     ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr);
101645f3bb6eSLisandro Dalcin     if (isnull) PetscFunctionReturn(0);
101757b952d6SSatish Balay   }
101857b952d6SSatish Balay 
10197da1fb6eSBarry Smith   {
102057b952d6SSatish Balay     /* assemble the entire matrix onto first processor. */
102157b952d6SSatish Balay     Mat         A;
102257b952d6SSatish Balay     Mat_SeqBAIJ *Aloc;
1023d0f46423SBarry Smith     PetscInt    M = mat->rmap->N,N = mat->cmap->N,*ai,*aj,col,i,j,k,*rvals,mbs = baij->mbs;
10243eda8832SBarry Smith     MatScalar   *a;
10253e219373SBarry Smith     const char  *matname;
102657b952d6SSatish Balay 
1027f204ca49SKris Buschelman     /* Here we are creating a temporary matrix, so will assume MPIBAIJ is acceptable */
1028f204ca49SKris Buschelman     /* Perhaps this should be the type of mat? */
1029ce94432eSBarry Smith     ierr = MatCreate(PetscObjectComm((PetscObject)mat),&A);CHKERRQ(ierr);
103057b952d6SSatish Balay     if (!rank) {
1031f69a0ea3SMatthew Knepley       ierr = MatSetSizes(A,M,N,M,N);CHKERRQ(ierr);
1032d64ed03dSBarry Smith     } else {
1033f69a0ea3SMatthew Knepley       ierr = MatSetSizes(A,0,0,M,N);CHKERRQ(ierr);
103457b952d6SSatish Balay     }
1035f204ca49SKris Buschelman     ierr = MatSetType(A,MATMPIBAIJ);CHKERRQ(ierr);
10360298fd71SBarry Smith     ierr = MatMPIBAIJSetPreallocation(A,mat->rmap->bs,0,NULL,0,NULL);CHKERRQ(ierr);
10372b82e772SSatish Balay     ierr = MatSetOption(A,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_FALSE);CHKERRQ(ierr);
10383bb1ff40SBarry Smith     ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)A);CHKERRQ(ierr);
103957b952d6SSatish Balay 
104057b952d6SSatish Balay     /* copy over the A part */
104157b952d6SSatish Balay     Aloc = (Mat_SeqBAIJ*)baij->A->data;
104257b952d6SSatish Balay     ai   = Aloc->i; aj = Aloc->j; a = Aloc->a;
1043785e854fSJed Brown     ierr = PetscMalloc1(bs,&rvals);CHKERRQ(ierr);
104457b952d6SSatish Balay 
104557b952d6SSatish Balay     for (i=0; i<mbs; i++) {
1046899cda47SBarry Smith       rvals[0] = bs*(baij->rstartbs + i);
104726fbe8dcSKarl Rupp       for (j=1; j<bs; j++) rvals[j] = rvals[j-1] + 1;
104857b952d6SSatish Balay       for (j=ai[i]; j<ai[i+1]; j++) {
1049899cda47SBarry Smith         col = (baij->cstartbs+aj[j])*bs;
105057b952d6SSatish Balay         for (k=0; k<bs; k++) {
105197e5c40aSBarry Smith           ierr      = MatSetValues_MPIBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr);
1052cee3aa6bSSatish Balay           col++; a += bs;
105357b952d6SSatish Balay         }
105457b952d6SSatish Balay       }
105557b952d6SSatish Balay     }
105657b952d6SSatish Balay     /* copy over the B part */
105757b952d6SSatish Balay     Aloc = (Mat_SeqBAIJ*)baij->B->data;
105857b952d6SSatish Balay     ai   = Aloc->i; aj = Aloc->j; a = Aloc->a;
105957b952d6SSatish Balay     for (i=0; i<mbs; i++) {
1060899cda47SBarry Smith       rvals[0] = bs*(baij->rstartbs + i);
106126fbe8dcSKarl Rupp       for (j=1; j<bs; j++) rvals[j] = rvals[j-1] + 1;
106257b952d6SSatish Balay       for (j=ai[i]; j<ai[i+1]; j++) {
106357b952d6SSatish Balay         col = baij->garray[aj[j]]*bs;
106457b952d6SSatish Balay         for (k=0; k<bs; k++) {
106597e5c40aSBarry Smith           ierr      = MatSetValues_MPIBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr);
1066cee3aa6bSSatish Balay           col++; a += bs;
106757b952d6SSatish Balay         }
106857b952d6SSatish Balay       }
106957b952d6SSatish Balay     }
1070606d414cSSatish Balay     ierr = PetscFree(rvals);CHKERRQ(ierr);
10716d4a8577SBarry Smith     ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
10726d4a8577SBarry Smith     ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
107355843e3eSBarry Smith     /*
107455843e3eSBarry Smith        Everyone has to call to draw the matrix since the graphics waits are
1075b0a32e0cSBarry Smith        synchronized across all processors that share the PetscDraw object
107655843e3eSBarry Smith     */
10773f08860eSBarry Smith     ierr = PetscViewerGetSubViewer(viewer,PETSC_COMM_SELF,&sviewer);CHKERRQ(ierr);
1078ade3a672SBarry Smith     ierr = PetscObjectGetName((PetscObject)mat,&matname);CHKERRQ(ierr);
10793e219373SBarry Smith     if (!rank) {
1080ade3a672SBarry Smith       ierr = PetscObjectSetName((PetscObject)((Mat_MPIBAIJ*)(A->data))->A,matname);CHKERRQ(ierr);
10817da1fb6eSBarry Smith       ierr = MatView_SeqBAIJ(((Mat_MPIBAIJ*)(A->data))->A,sviewer);CHKERRQ(ierr);
108257b952d6SSatish Balay     }
10833f08860eSBarry Smith     ierr = PetscViewerRestoreSubViewer(viewer,PETSC_COMM_SELF,&sviewer);CHKERRQ(ierr);
10841575c14dSBarry Smith     ierr = PetscViewerFlush(viewer);CHKERRQ(ierr);
10856bf464f9SBarry Smith     ierr = MatDestroy(&A);CHKERRQ(ierr);
108657b952d6SSatish Balay   }
10873a40ed3dSBarry Smith   PetscFunctionReturn(0);
108857b952d6SSatish Balay }
108957b952d6SSatish Balay 
1090618cc2edSLisandro Dalcin /* Used for both MPIBAIJ and MPISBAIJ matrices */
1091b51a4376SLisandro Dalcin PetscErrorCode MatView_MPIBAIJ_Binary(Mat mat,PetscViewer viewer)
1092660746e0SBarry Smith {
1093b51a4376SLisandro Dalcin   Mat_MPIBAIJ    *aij = (Mat_MPIBAIJ*)mat->data;
1094b51a4376SLisandro Dalcin   Mat_SeqBAIJ    *A   = (Mat_SeqBAIJ*)aij->A->data;
1095b51a4376SLisandro Dalcin   Mat_SeqBAIJ    *B   = (Mat_SeqBAIJ*)aij->B->data;
1096b51a4376SLisandro Dalcin   const PetscInt *garray = aij->garray;
1097b51a4376SLisandro Dalcin   PetscInt       header[4],M,N,m,rs,cs,bs,nz,cnt,i,j,ja,jb,k,l;
1098b51a4376SLisandro Dalcin   PetscInt       *rowlens,*colidxs;
1099b51a4376SLisandro Dalcin   PetscScalar    *matvals;
1100660746e0SBarry Smith   PetscErrorCode ierr;
1101660746e0SBarry Smith 
1102660746e0SBarry Smith   PetscFunctionBegin;
1103b51a4376SLisandro Dalcin   ierr = PetscViewerSetUp(viewer);CHKERRQ(ierr);
1104b51a4376SLisandro Dalcin 
1105b51a4376SLisandro Dalcin   M  = mat->rmap->N;
1106b51a4376SLisandro Dalcin   N  = mat->cmap->N;
1107b51a4376SLisandro Dalcin   m  = mat->rmap->n;
1108b51a4376SLisandro Dalcin   rs = mat->rmap->rstart;
1109b51a4376SLisandro Dalcin   cs = mat->cmap->rstart;
1110b51a4376SLisandro Dalcin   bs = mat->rmap->bs;
1111b51a4376SLisandro Dalcin   nz = bs*bs*(A->nz + B->nz);
1112b51a4376SLisandro Dalcin 
1113b51a4376SLisandro Dalcin   /* write matrix header */
1114660746e0SBarry Smith   header[0] = MAT_FILE_CLASSID;
1115b51a4376SLisandro Dalcin   header[1] = M; header[2] = N; header[3] = nz;
1116ce94432eSBarry Smith   ierr = MPI_Reduce(&nz,&header[3],1,MPIU_INT,MPI_SUM,0,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
1117b51a4376SLisandro Dalcin   ierr = PetscViewerBinaryWrite(viewer,header,4,PETSC_INT);CHKERRQ(ierr);
1118660746e0SBarry Smith 
1119b51a4376SLisandro Dalcin   /* fill in and store row lengths */
1120b51a4376SLisandro Dalcin   ierr = PetscMalloc1(m,&rowlens);CHKERRQ(ierr);
1121b51a4376SLisandro Dalcin   for (cnt=0, i=0; i<A->mbs; i++)
1122b51a4376SLisandro Dalcin     for (j=0; j<bs; j++)
1123b51a4376SLisandro Dalcin       rowlens[cnt++] = bs*(A->i[i+1] - A->i[i] + B->i[i+1] - B->i[i]);
1124b51a4376SLisandro Dalcin   ierr = PetscViewerBinaryWriteAll(viewer,rowlens,m,rs,M,PETSC_INT);CHKERRQ(ierr);
1125b51a4376SLisandro Dalcin   ierr = PetscFree(rowlens);CHKERRQ(ierr);
1126660746e0SBarry Smith 
1127b51a4376SLisandro Dalcin   /* fill in and store column indices */
1128b51a4376SLisandro Dalcin   ierr = PetscMalloc1(nz,&colidxs);CHKERRQ(ierr);
1129b51a4376SLisandro Dalcin   for (cnt=0, i=0; i<A->mbs; i++) {
1130b51a4376SLisandro Dalcin     for (k=0; k<bs; k++) {
1131b51a4376SLisandro Dalcin       for (jb=B->i[i]; jb<B->i[i+1]; jb++) {
1132b51a4376SLisandro Dalcin         if (garray[B->j[jb]] > cs/bs) break;
1133b51a4376SLisandro Dalcin         for (l=0; l<bs; l++)
1134b51a4376SLisandro Dalcin           colidxs[cnt++] = bs*garray[B->j[jb]] + l;
1135660746e0SBarry Smith       }
1136b51a4376SLisandro Dalcin       for (ja=A->i[i]; ja<A->i[i+1]; ja++)
1137b51a4376SLisandro Dalcin         for (l=0; l<bs; l++)
1138b51a4376SLisandro Dalcin           colidxs[cnt++] = bs*A->j[ja] + l + cs;
1139b51a4376SLisandro Dalcin       for (; jb<B->i[i+1]; jb++)
1140b51a4376SLisandro Dalcin         for (l=0; l<bs; l++)
1141b51a4376SLisandro Dalcin           colidxs[cnt++] = bs*garray[B->j[jb]] + l;
1142660746e0SBarry Smith     }
1143660746e0SBarry Smith   }
1144660746e0SBarry Smith   if (cnt != nz) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_LIB,"Internal PETSc error: cnt = %D nz = %D",cnt,nz);
1145b51a4376SLisandro Dalcin   ierr = PetscViewerBinaryWriteAll(viewer,colidxs,nz,PETSC_DECIDE,PETSC_DECIDE,PETSC_INT);CHKERRQ(ierr);
1146b51a4376SLisandro Dalcin   ierr = PetscFree(colidxs);CHKERRQ(ierr);
1147660746e0SBarry Smith 
1148b51a4376SLisandro Dalcin   /* fill in and store nonzero values */
1149b51a4376SLisandro Dalcin   ierr = PetscMalloc1(nz,&matvals);CHKERRQ(ierr);
1150b51a4376SLisandro Dalcin   for (cnt=0, i=0; i<A->mbs; i++) {
1151b51a4376SLisandro Dalcin     for (k=0; k<bs; k++) {
1152b51a4376SLisandro Dalcin       for (jb=B->i[i]; jb<B->i[i+1]; jb++) {
1153b51a4376SLisandro Dalcin         if (garray[B->j[jb]] > cs/bs) break;
1154b51a4376SLisandro Dalcin         for (l=0; l<bs; l++)
1155b51a4376SLisandro Dalcin           matvals[cnt++] = B->a[bs*(bs*jb + l) + k];
1156660746e0SBarry Smith       }
1157b51a4376SLisandro Dalcin       for (ja=A->i[i]; ja<A->i[i+1]; ja++)
1158b51a4376SLisandro Dalcin         for (l=0; l<bs; l++)
1159b51a4376SLisandro Dalcin           matvals[cnt++] = A->a[bs*(bs*ja + l) + k];
1160b51a4376SLisandro Dalcin       for (; jb<B->i[i+1]; jb++)
1161b51a4376SLisandro Dalcin         for (l=0; l<bs; l++)
1162d21b9a37SPierre Jolivet           matvals[cnt++] = B->a[bs*(bs*jb + l) + k];
1163660746e0SBarry Smith     }
1164b51a4376SLisandro Dalcin   }
1165b51a4376SLisandro Dalcin   ierr = PetscViewerBinaryWriteAll(viewer,matvals,nz,PETSC_DECIDE,PETSC_DECIDE,PETSC_SCALAR);CHKERRQ(ierr);
1166b51a4376SLisandro Dalcin   ierr = PetscFree(matvals);CHKERRQ(ierr);
1167660746e0SBarry Smith 
1168b51a4376SLisandro Dalcin   /* write block size option to the viewer's .info file */
1169b51a4376SLisandro Dalcin   ierr = MatView_Binary_BlockSizes(mat,viewer);CHKERRQ(ierr);
1170660746e0SBarry Smith   PetscFunctionReturn(0);
1171660746e0SBarry Smith }
1172660746e0SBarry Smith 
1173dfbe8321SBarry Smith PetscErrorCode MatView_MPIBAIJ(Mat mat,PetscViewer viewer)
117457b952d6SSatish Balay {
1175dfbe8321SBarry Smith   PetscErrorCode ierr;
1176ace3abfcSBarry Smith   PetscBool      iascii,isdraw,issocket,isbinary;
117757b952d6SSatish Balay 
1178d64ed03dSBarry Smith   PetscFunctionBegin;
1179251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr);
1180251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr);
1181251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERSOCKET,&issocket);CHKERRQ(ierr);
1182251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary);CHKERRQ(ierr);
1183660746e0SBarry Smith   if (iascii || isdraw || issocket) {
11847b2a1423SBarry Smith     ierr = MatView_MPIBAIJ_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr);
1185660746e0SBarry Smith   } else if (isbinary) {
1186660746e0SBarry Smith     ierr = MatView_MPIBAIJ_Binary(mat,viewer);CHKERRQ(ierr);
118757b952d6SSatish Balay   }
11883a40ed3dSBarry Smith   PetscFunctionReturn(0);
118957b952d6SSatish Balay }
119057b952d6SSatish Balay 
1191dfbe8321SBarry Smith PetscErrorCode MatDestroy_MPIBAIJ(Mat mat)
119279bdfe76SSatish Balay {
119379bdfe76SSatish Balay   Mat_MPIBAIJ    *baij = (Mat_MPIBAIJ*)mat->data;
1194dfbe8321SBarry Smith   PetscErrorCode ierr;
119579bdfe76SSatish Balay 
1196d64ed03dSBarry Smith   PetscFunctionBegin;
1197aa482453SBarry Smith #if defined(PETSC_USE_LOG)
1198d0f46423SBarry Smith   PetscLogObjectState((PetscObject)mat,"Rows=%D,Cols=%D",mat->rmap->N,mat->cmap->N);
119979bdfe76SSatish Balay #endif
12008798bf22SSatish Balay   ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr);
12018798bf22SSatish Balay   ierr = MatStashDestroy_Private(&mat->bstash);CHKERRQ(ierr);
12026bf464f9SBarry Smith   ierr = MatDestroy(&baij->A);CHKERRQ(ierr);
12036bf464f9SBarry Smith   ierr = MatDestroy(&baij->B);CHKERRQ(ierr);
1204aa482453SBarry Smith #if defined(PETSC_USE_CTABLE)
12056bc0bbbfSBarry Smith   ierr = PetscTableDestroy(&baij->colmap);CHKERRQ(ierr);
120648e59246SSatish Balay #else
120705b42c5fSBarry Smith   ierr = PetscFree(baij->colmap);CHKERRQ(ierr);
120848e59246SSatish Balay #endif
120905b42c5fSBarry Smith   ierr = PetscFree(baij->garray);CHKERRQ(ierr);
12106bf464f9SBarry Smith   ierr = VecDestroy(&baij->lvec);CHKERRQ(ierr);
12116bf464f9SBarry Smith   ierr = VecScatterDestroy(&baij->Mvctx);CHKERRQ(ierr);
1212fca92195SBarry Smith   ierr = PetscFree2(baij->rowvalues,baij->rowindices);CHKERRQ(ierr);
121305b42c5fSBarry Smith   ierr = PetscFree(baij->barray);CHKERRQ(ierr);
1214fca92195SBarry Smith   ierr = PetscFree2(baij->hd,baij->ht);CHKERRQ(ierr);
1215899cda47SBarry Smith   ierr = PetscFree(baij->rangebs);CHKERRQ(ierr);
1216bf0cc555SLisandro Dalcin   ierr = PetscFree(mat->data);CHKERRQ(ierr);
1217901853e0SKris Buschelman 
1218dbd8c25aSHong Zhang   ierr = PetscObjectChangeTypeName((PetscObject)mat,0);CHKERRQ(ierr);
1219bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatStoreValues_C",NULL);CHKERRQ(ierr);
1220bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatRetrieveValues_C",NULL);CHKERRQ(ierr);
1221bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPIBAIJSetPreallocation_C",NULL);CHKERRQ(ierr);
1222bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPIBAIJSetPreallocationCSR_C",NULL);CHKERRQ(ierr);
1223bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDiagonalScaleLocal_C",NULL);CHKERRQ(ierr);
1224bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatSetHashTableFactor_C",NULL);CHKERRQ(ierr);
1225bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpibaij_mpisbaij_C",NULL);CHKERRQ(ierr);
1226bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpibaij_mpibstrm_C",NULL);CHKERRQ(ierr);
12277ea3e4caSstefano_zampini #if defined(PETSC_HAVE_HYPRE)
12287ea3e4caSstefano_zampini   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpibaij_hypre_C",NULL);CHKERRQ(ierr);
12297ea3e4caSstefano_zampini #endif
1230c9225affSStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpibaij_is_C",NULL);CHKERRQ(ierr);
12313a40ed3dSBarry Smith   PetscFunctionReturn(0);
123279bdfe76SSatish Balay }
123379bdfe76SSatish Balay 
1234dfbe8321SBarry Smith PetscErrorCode MatMult_MPIBAIJ(Mat A,Vec xx,Vec yy)
1235cee3aa6bSSatish Balay {
1236cee3aa6bSSatish Balay   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)A->data;
1237dfbe8321SBarry Smith   PetscErrorCode ierr;
1238b24ad042SBarry Smith   PetscInt       nt;
1239cee3aa6bSSatish Balay 
1240d64ed03dSBarry Smith   PetscFunctionBegin;
1241e1311b90SBarry Smith   ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr);
1242e7e72b3dSBarry Smith   if (nt != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx");
1243e1311b90SBarry Smith   ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr);
1244e7e72b3dSBarry Smith   if (nt != A->rmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible parition of A and yy");
1245ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1246f830108cSBarry Smith   ierr = (*a->A->ops->mult)(a->A,xx,yy);CHKERRQ(ierr);
1247ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1248f830108cSBarry Smith   ierr = (*a->B->ops->multadd)(a->B,a->lvec,yy,yy);CHKERRQ(ierr);
12493a40ed3dSBarry Smith   PetscFunctionReturn(0);
1250cee3aa6bSSatish Balay }
1251cee3aa6bSSatish Balay 
1252dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPIBAIJ(Mat A,Vec xx,Vec yy,Vec zz)
1253cee3aa6bSSatish Balay {
1254cee3aa6bSSatish Balay   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)A->data;
1255dfbe8321SBarry Smith   PetscErrorCode ierr;
1256d64ed03dSBarry Smith 
1257d64ed03dSBarry Smith   PetscFunctionBegin;
1258ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1259f830108cSBarry Smith   ierr = (*a->A->ops->multadd)(a->A,xx,yy,zz);CHKERRQ(ierr);
1260ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1261f830108cSBarry Smith   ierr = (*a->B->ops->multadd)(a->B,a->lvec,zz,zz);CHKERRQ(ierr);
12623a40ed3dSBarry Smith   PetscFunctionReturn(0);
1263cee3aa6bSSatish Balay }
1264cee3aa6bSSatish Balay 
1265dfbe8321SBarry Smith PetscErrorCode MatMultTranspose_MPIBAIJ(Mat A,Vec xx,Vec yy)
1266cee3aa6bSSatish Balay {
1267cee3aa6bSSatish Balay   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)A->data;
1268dfbe8321SBarry Smith   PetscErrorCode ierr;
1269cee3aa6bSSatish Balay 
1270d64ed03dSBarry Smith   PetscFunctionBegin;
1271cee3aa6bSSatish Balay   /* do nondiagonal part */
12727c922b88SBarry Smith   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr);
1273cee3aa6bSSatish Balay   /* do local part */
12747c922b88SBarry Smith   ierr = (*a->A->ops->multtranspose)(a->A,xx,yy);CHKERRQ(ierr);
1275e4a140f6SJunchao Zhang   /* add partial results together */
1276ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
1277ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
12783a40ed3dSBarry Smith   PetscFunctionReturn(0);
1279cee3aa6bSSatish Balay }
1280cee3aa6bSSatish Balay 
1281dfbe8321SBarry Smith PetscErrorCode MatMultTransposeAdd_MPIBAIJ(Mat A,Vec xx,Vec yy,Vec zz)
1282cee3aa6bSSatish Balay {
1283cee3aa6bSSatish Balay   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)A->data;
1284dfbe8321SBarry Smith   PetscErrorCode ierr;
1285cee3aa6bSSatish Balay 
1286d64ed03dSBarry Smith   PetscFunctionBegin;
1287cee3aa6bSSatish Balay   /* do nondiagonal part */
12887c922b88SBarry Smith   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr);
1289cee3aa6bSSatish Balay   /* do local part */
12907c922b88SBarry Smith   ierr = (*a->A->ops->multtransposeadd)(a->A,xx,yy,zz);CHKERRQ(ierr);
1291e4a140f6SJunchao Zhang   /* add partial results together */
1292e4a140f6SJunchao Zhang   ierr = VecScatterBegin(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
1293ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
12943a40ed3dSBarry Smith   PetscFunctionReturn(0);
1295cee3aa6bSSatish Balay }
1296cee3aa6bSSatish Balay 
1297cee3aa6bSSatish Balay /*
1298cee3aa6bSSatish Balay   This only works correctly for square matrices where the subblock A->A is the
1299cee3aa6bSSatish Balay    diagonal block
1300cee3aa6bSSatish Balay */
1301dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_MPIBAIJ(Mat A,Vec v)
1302cee3aa6bSSatish Balay {
1303cee3aa6bSSatish Balay   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)A->data;
1304dfbe8321SBarry Smith   PetscErrorCode ierr;
1305d64ed03dSBarry Smith 
1306d64ed03dSBarry Smith   PetscFunctionBegin;
1307e32f2f54SBarry Smith   if (A->rmap->N != A->cmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block");
13083a40ed3dSBarry Smith   ierr = MatGetDiagonal(a->A,v);CHKERRQ(ierr);
13093a40ed3dSBarry Smith   PetscFunctionReturn(0);
1310cee3aa6bSSatish Balay }
1311cee3aa6bSSatish Balay 
1312f4df32b1SMatthew Knepley PetscErrorCode MatScale_MPIBAIJ(Mat A,PetscScalar aa)
1313cee3aa6bSSatish Balay {
1314cee3aa6bSSatish Balay   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)A->data;
1315dfbe8321SBarry Smith   PetscErrorCode ierr;
1316d64ed03dSBarry Smith 
1317d64ed03dSBarry Smith   PetscFunctionBegin;
1318f4df32b1SMatthew Knepley   ierr = MatScale(a->A,aa);CHKERRQ(ierr);
1319f4df32b1SMatthew Knepley   ierr = MatScale(a->B,aa);CHKERRQ(ierr);
13203a40ed3dSBarry Smith   PetscFunctionReturn(0);
1321cee3aa6bSSatish Balay }
1322026e39d0SSatish Balay 
1323b24ad042SBarry Smith PetscErrorCode MatGetRow_MPIBAIJ(Mat matin,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v)
1324acdf5bf4SSatish Balay {
1325acdf5bf4SSatish Balay   Mat_MPIBAIJ    *mat = (Mat_MPIBAIJ*)matin->data;
132687828ca2SBarry Smith   PetscScalar    *vworkA,*vworkB,**pvA,**pvB,*v_p;
13276849ba73SBarry Smith   PetscErrorCode ierr;
1328d0f46423SBarry Smith   PetscInt       bs = matin->rmap->bs,bs2 = mat->bs2,i,*cworkA,*cworkB,**pcA,**pcB;
1329d0f46423SBarry Smith   PetscInt       nztot,nzA,nzB,lrow,brstart = matin->rmap->rstart,brend = matin->rmap->rend;
1330899cda47SBarry Smith   PetscInt       *cmap,*idx_p,cstart = mat->cstartbs;
1331acdf5bf4SSatish Balay 
1332d64ed03dSBarry Smith   PetscFunctionBegin;
1333e7e72b3dSBarry Smith   if (row < brstart || row >= brend) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local rows");
1334e32f2f54SBarry Smith   if (mat->getrowactive) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Already active");
1335acdf5bf4SSatish Balay   mat->getrowactive = PETSC_TRUE;
1336acdf5bf4SSatish Balay 
1337acdf5bf4SSatish Balay   if (!mat->rowvalues && (idx || v)) {
1338acdf5bf4SSatish Balay     /*
1339acdf5bf4SSatish Balay         allocate enough space to hold information from the longest row.
1340acdf5bf4SSatish Balay     */
1341acdf5bf4SSatish Balay     Mat_SeqBAIJ *Aa = (Mat_SeqBAIJ*)mat->A->data,*Ba = (Mat_SeqBAIJ*)mat->B->data;
1342b24ad042SBarry Smith     PetscInt    max = 1,mbs = mat->mbs,tmp;
1343bd16c2feSSatish Balay     for (i=0; i<mbs; i++) {
1344acdf5bf4SSatish Balay       tmp = Aa->i[i+1] - Aa->i[i] + Ba->i[i+1] - Ba->i[i];
134526fbe8dcSKarl Rupp       if (max < tmp) max = tmp;
1346acdf5bf4SSatish Balay     }
1347dcca6d9dSJed Brown     ierr = PetscMalloc2(max*bs2,&mat->rowvalues,max*bs2,&mat->rowindices);CHKERRQ(ierr);
1348acdf5bf4SSatish Balay   }
1349d9d09a02SSatish Balay   lrow = row - brstart;
1350acdf5bf4SSatish Balay 
1351acdf5bf4SSatish Balay   pvA = &vworkA; pcA = &cworkA; pvB = &vworkB; pcB = &cworkB;
1352acdf5bf4SSatish Balay   if (!v)   {pvA = 0; pvB = 0;}
1353acdf5bf4SSatish Balay   if (!idx) {pcA = 0; if (!v) pcB = 0;}
1354f830108cSBarry Smith   ierr  = (*mat->A->ops->getrow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr);
1355f830108cSBarry Smith   ierr  = (*mat->B->ops->getrow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr);
1356acdf5bf4SSatish Balay   nztot = nzA + nzB;
1357acdf5bf4SSatish Balay 
1358acdf5bf4SSatish Balay   cmap = mat->garray;
1359acdf5bf4SSatish Balay   if (v  || idx) {
1360acdf5bf4SSatish Balay     if (nztot) {
1361acdf5bf4SSatish Balay       /* Sort by increasing column numbers, assuming A and B already sorted */
1362b24ad042SBarry Smith       PetscInt imark = -1;
1363acdf5bf4SSatish Balay       if (v) {
1364acdf5bf4SSatish Balay         *v = v_p = mat->rowvalues;
1365acdf5bf4SSatish Balay         for (i=0; i<nzB; i++) {
1366d9d09a02SSatish Balay           if (cmap[cworkB[i]/bs] < cstart) v_p[i] = vworkB[i];
1367acdf5bf4SSatish Balay           else break;
1368acdf5bf4SSatish Balay         }
1369acdf5bf4SSatish Balay         imark = i;
1370acdf5bf4SSatish Balay         for (i=0; i<nzA; i++)     v_p[imark+i] = vworkA[i];
1371acdf5bf4SSatish Balay         for (i=imark; i<nzB; i++) v_p[nzA+i]   = vworkB[i];
1372acdf5bf4SSatish Balay       }
1373acdf5bf4SSatish Balay       if (idx) {
1374acdf5bf4SSatish Balay         *idx = idx_p = mat->rowindices;
1375acdf5bf4SSatish Balay         if (imark > -1) {
1376acdf5bf4SSatish Balay           for (i=0; i<imark; i++) {
1377bd16c2feSSatish Balay             idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs;
1378acdf5bf4SSatish Balay           }
1379acdf5bf4SSatish Balay         } else {
1380acdf5bf4SSatish Balay           for (i=0; i<nzB; i++) {
138126fbe8dcSKarl Rupp             if (cmap[cworkB[i]/bs] < cstart) idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs;
1382acdf5bf4SSatish Balay             else break;
1383acdf5bf4SSatish Balay           }
1384acdf5bf4SSatish Balay           imark = i;
1385acdf5bf4SSatish Balay         }
1386d9d09a02SSatish Balay         for (i=0; i<nzA; i++)     idx_p[imark+i] = cstart*bs + cworkA[i];
1387d9d09a02SSatish Balay         for (i=imark; i<nzB; i++) idx_p[nzA+i]   = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ;
1388acdf5bf4SSatish Balay       }
1389d64ed03dSBarry Smith     } else {
1390d212a18eSSatish Balay       if (idx) *idx = 0;
1391d212a18eSSatish Balay       if (v)   *v   = 0;
1392d212a18eSSatish Balay     }
1393acdf5bf4SSatish Balay   }
1394acdf5bf4SSatish Balay   *nz  = nztot;
1395f830108cSBarry Smith   ierr = (*mat->A->ops->restorerow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr);
1396f830108cSBarry Smith   ierr = (*mat->B->ops->restorerow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr);
13973a40ed3dSBarry Smith   PetscFunctionReturn(0);
1398acdf5bf4SSatish Balay }
1399acdf5bf4SSatish Balay 
1400b24ad042SBarry Smith PetscErrorCode MatRestoreRow_MPIBAIJ(Mat mat,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v)
1401acdf5bf4SSatish Balay {
1402acdf5bf4SSatish Balay   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data;
1403d64ed03dSBarry Smith 
1404d64ed03dSBarry Smith   PetscFunctionBegin;
1405e7e72b3dSBarry Smith   if (!baij->getrowactive) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"MatGetRow not called");
1406acdf5bf4SSatish Balay   baij->getrowactive = PETSC_FALSE;
14073a40ed3dSBarry Smith   PetscFunctionReturn(0);
1408acdf5bf4SSatish Balay }
1409acdf5bf4SSatish Balay 
1410dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_MPIBAIJ(Mat A)
141158667388SSatish Balay {
141258667388SSatish Balay   Mat_MPIBAIJ    *l = (Mat_MPIBAIJ*)A->data;
1413dfbe8321SBarry Smith   PetscErrorCode ierr;
1414d64ed03dSBarry Smith 
1415d64ed03dSBarry Smith   PetscFunctionBegin;
141658667388SSatish Balay   ierr = MatZeroEntries(l->A);CHKERRQ(ierr);
141758667388SSatish Balay   ierr = MatZeroEntries(l->B);CHKERRQ(ierr);
14183a40ed3dSBarry Smith   PetscFunctionReturn(0);
141958667388SSatish Balay }
14200ac07820SSatish Balay 
1421dfbe8321SBarry Smith PetscErrorCode MatGetInfo_MPIBAIJ(Mat matin,MatInfoType flag,MatInfo *info)
14220ac07820SSatish Balay {
14234e220ebcSLois Curfman McInnes   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)matin->data;
14244e220ebcSLois Curfman McInnes   Mat            A  = a->A,B = a->B;
1425dfbe8321SBarry Smith   PetscErrorCode ierr;
14263966268fSBarry Smith   PetscLogDouble isend[5],irecv[5];
14270ac07820SSatish Balay 
1428d64ed03dSBarry Smith   PetscFunctionBegin;
1429d0f46423SBarry Smith   info->block_size = (PetscReal)matin->rmap->bs;
143026fbe8dcSKarl Rupp 
14314e220ebcSLois Curfman McInnes   ierr = MatGetInfo(A,MAT_LOCAL,info);CHKERRQ(ierr);
143226fbe8dcSKarl Rupp 
14330e4b21beSBarry Smith   isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded;
1434de87f314SBarry Smith   isend[3] = info->memory;  isend[4] = info->mallocs;
143526fbe8dcSKarl Rupp 
14364e220ebcSLois Curfman McInnes   ierr = MatGetInfo(B,MAT_LOCAL,info);CHKERRQ(ierr);
143726fbe8dcSKarl Rupp 
14380e4b21beSBarry Smith   isend[0] += info->nz_used; isend[1] += info->nz_allocated; isend[2] += info->nz_unneeded;
1439de87f314SBarry Smith   isend[3] += info->memory;  isend[4] += info->mallocs;
144026fbe8dcSKarl Rupp 
14410ac07820SSatish Balay   if (flag == MAT_LOCAL) {
14424e220ebcSLois Curfman McInnes     info->nz_used      = isend[0];
14434e220ebcSLois Curfman McInnes     info->nz_allocated = isend[1];
14444e220ebcSLois Curfman McInnes     info->nz_unneeded  = isend[2];
14454e220ebcSLois Curfman McInnes     info->memory       = isend[3];
14464e220ebcSLois Curfman McInnes     info->mallocs      = isend[4];
14470ac07820SSatish Balay   } else if (flag == MAT_GLOBAL_MAX) {
14483966268fSBarry Smith     ierr = MPIU_Allreduce(isend,irecv,5,MPIU_PETSCLOGDOUBLE,MPI_MAX,PetscObjectComm((PetscObject)matin));CHKERRQ(ierr);
144926fbe8dcSKarl Rupp 
14504e220ebcSLois Curfman McInnes     info->nz_used      = irecv[0];
14514e220ebcSLois Curfman McInnes     info->nz_allocated = irecv[1];
14524e220ebcSLois Curfman McInnes     info->nz_unneeded  = irecv[2];
14534e220ebcSLois Curfman McInnes     info->memory       = irecv[3];
14544e220ebcSLois Curfman McInnes     info->mallocs      = irecv[4];
14550ac07820SSatish Balay   } else if (flag == MAT_GLOBAL_SUM) {
14563966268fSBarry Smith     ierr = MPIU_Allreduce(isend,irecv,5,MPIU_PETSCLOGDOUBLE,MPI_SUM,PetscObjectComm((PetscObject)matin));CHKERRQ(ierr);
145726fbe8dcSKarl Rupp 
14584e220ebcSLois Curfman McInnes     info->nz_used      = irecv[0];
14594e220ebcSLois Curfman McInnes     info->nz_allocated = irecv[1];
14604e220ebcSLois Curfman McInnes     info->nz_unneeded  = irecv[2];
14614e220ebcSLois Curfman McInnes     info->memory       = irecv[3];
14624e220ebcSLois Curfman McInnes     info->mallocs      = irecv[4];
1463ce94432eSBarry Smith   } else SETERRQ1(PetscObjectComm((PetscObject)matin),PETSC_ERR_ARG_WRONG,"Unknown MatInfoType argument %d",(int)flag);
14644e220ebcSLois Curfman McInnes   info->fill_ratio_given  = 0; /* no parallel LU/ILU/Cholesky */
14654e220ebcSLois Curfman McInnes   info->fill_ratio_needed = 0;
14664e220ebcSLois Curfman McInnes   info->factor_mallocs    = 0;
14673a40ed3dSBarry Smith   PetscFunctionReturn(0);
14680ac07820SSatish Balay }
14690ac07820SSatish Balay 
1470ace3abfcSBarry Smith PetscErrorCode MatSetOption_MPIBAIJ(Mat A,MatOption op,PetscBool flg)
147158667388SSatish Balay {
147258667388SSatish Balay   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)A->data;
1473dfbe8321SBarry Smith   PetscErrorCode ierr;
147458667388SSatish Balay 
1475d64ed03dSBarry Smith   PetscFunctionBegin;
147612c028f9SKris Buschelman   switch (op) {
1477512a5fc5SBarry Smith   case MAT_NEW_NONZERO_LOCATIONS:
147812c028f9SKris Buschelman   case MAT_NEW_NONZERO_ALLOCATION_ERR:
147928b2fa4aSMatthew Knepley   case MAT_UNUSED_NONZERO_LOCATION_ERR:
1480a9817697SBarry Smith   case MAT_KEEP_NONZERO_PATTERN:
148112c028f9SKris Buschelman   case MAT_NEW_NONZERO_LOCATION_ERR:
148243674050SBarry Smith     MatCheckPreallocated(A,1);
14834e0d8c25SBarry Smith     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
14844e0d8c25SBarry Smith     ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr);
148512c028f9SKris Buschelman     break;
148612c028f9SKris Buschelman   case MAT_ROW_ORIENTED:
148743674050SBarry Smith     MatCheckPreallocated(A,1);
14884e0d8c25SBarry Smith     a->roworiented = flg;
148926fbe8dcSKarl Rupp 
14904e0d8c25SBarry Smith     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
14914e0d8c25SBarry Smith     ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr);
149212c028f9SKris Buschelman     break;
14934e0d8c25SBarry Smith   case MAT_NEW_DIAGONALS:
1494071fcb05SBarry Smith   case MAT_SORTED_FULL:
1495290bbb0aSBarry Smith     ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr);
149612c028f9SKris Buschelman     break;
149712c028f9SKris Buschelman   case MAT_IGNORE_OFF_PROC_ENTRIES:
14984e0d8c25SBarry Smith     a->donotstash = flg;
149912c028f9SKris Buschelman     break;
150012c028f9SKris Buschelman   case MAT_USE_HASH_TABLE:
15014e0d8c25SBarry Smith     a->ht_flag = flg;
1502abf3b562SBarry Smith     a->ht_fact = 1.39;
150312c028f9SKris Buschelman     break;
150477e54ba9SKris Buschelman   case MAT_SYMMETRIC:
150577e54ba9SKris Buschelman   case MAT_STRUCTURALLY_SYMMETRIC:
15062188ac68SBarry Smith   case MAT_HERMITIAN:
1507c10200c1SHong Zhang   case MAT_SUBMAT_SINGLEIS:
15082188ac68SBarry Smith   case MAT_SYMMETRY_ETERNAL:
150943674050SBarry Smith     MatCheckPreallocated(A,1);
15104e0d8c25SBarry Smith     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
151177e54ba9SKris Buschelman     break;
151212c028f9SKris Buschelman   default:
1513ce94432eSBarry Smith     SETERRQ1(PetscObjectComm((PetscObject)A),PETSC_ERR_SUP,"unknown option %d",op);
1514d64ed03dSBarry Smith   }
15153a40ed3dSBarry Smith   PetscFunctionReturn(0);
151658667388SSatish Balay }
151758667388SSatish Balay 
1518fc4dec0aSBarry Smith PetscErrorCode MatTranspose_MPIBAIJ(Mat A,MatReuse reuse,Mat *matout)
15190ac07820SSatish Balay {
15200ac07820SSatish Balay   Mat_MPIBAIJ    *baij = (Mat_MPIBAIJ*)A->data;
15210ac07820SSatish Balay   Mat_SeqBAIJ    *Aloc;
15220ac07820SSatish Balay   Mat            B;
1523dfbe8321SBarry Smith   PetscErrorCode ierr;
1524d0f46423SBarry Smith   PetscInt       M =A->rmap->N,N=A->cmap->N,*ai,*aj,i,*rvals,j,k,col;
1525d0f46423SBarry Smith   PetscInt       bs=A->rmap->bs,mbs=baij->mbs;
15263eda8832SBarry Smith   MatScalar      *a;
15270ac07820SSatish Balay 
1528d64ed03dSBarry Smith   PetscFunctionBegin;
1529cf37664fSBarry Smith   if (reuse == MAT_INITIAL_MATRIX || reuse == MAT_INPLACE_MATRIX) {
1530ce94432eSBarry Smith     ierr = MatCreate(PetscObjectComm((PetscObject)A),&B);CHKERRQ(ierr);
1531d0f46423SBarry Smith     ierr = MatSetSizes(B,A->cmap->n,A->rmap->n,N,M);CHKERRQ(ierr);
15327adad957SLisandro Dalcin     ierr = MatSetType(B,((PetscObject)A)->type_name);CHKERRQ(ierr);
15332e72b8d9SBarry Smith     /* Do not know preallocation information, but must set block size */
15340298fd71SBarry Smith     ierr = MatMPIBAIJSetPreallocation(B,A->rmap->bs,PETSC_DECIDE,NULL,PETSC_DECIDE,NULL);CHKERRQ(ierr);
1535fc4dec0aSBarry Smith   } else {
1536fc4dec0aSBarry Smith     B = *matout;
1537fc4dec0aSBarry Smith   }
15380ac07820SSatish Balay 
15390ac07820SSatish Balay   /* copy over the A part */
15400ac07820SSatish Balay   Aloc = (Mat_SeqBAIJ*)baij->A->data;
15410ac07820SSatish Balay   ai   = Aloc->i; aj = Aloc->j; a = Aloc->a;
1542785e854fSJed Brown   ierr = PetscMalloc1(bs,&rvals);CHKERRQ(ierr);
15430ac07820SSatish Balay 
15440ac07820SSatish Balay   for (i=0; i<mbs; i++) {
1545899cda47SBarry Smith     rvals[0] = bs*(baij->rstartbs + i);
154626fbe8dcSKarl Rupp     for (j=1; j<bs; j++) rvals[j] = rvals[j-1] + 1;
15470ac07820SSatish Balay     for (j=ai[i]; j<ai[i+1]; j++) {
1548899cda47SBarry Smith       col = (baij->cstartbs+aj[j])*bs;
15490ac07820SSatish Balay       for (k=0; k<bs; k++) {
155097e5c40aSBarry Smith         ierr = MatSetValues_MPIBAIJ(B,1,&col,bs,rvals,a,INSERT_VALUES);CHKERRQ(ierr);
155126fbe8dcSKarl Rupp 
15520ac07820SSatish Balay         col++; a += bs;
15530ac07820SSatish Balay       }
15540ac07820SSatish Balay     }
15550ac07820SSatish Balay   }
15560ac07820SSatish Balay   /* copy over the B part */
15570ac07820SSatish Balay   Aloc = (Mat_SeqBAIJ*)baij->B->data;
15580ac07820SSatish Balay   ai   = Aloc->i; aj = Aloc->j; a = Aloc->a;
15590ac07820SSatish Balay   for (i=0; i<mbs; i++) {
1560899cda47SBarry Smith     rvals[0] = bs*(baij->rstartbs + i);
156126fbe8dcSKarl Rupp     for (j=1; j<bs; j++) rvals[j] = rvals[j-1] + 1;
15620ac07820SSatish Balay     for (j=ai[i]; j<ai[i+1]; j++) {
15630ac07820SSatish Balay       col = baij->garray[aj[j]]*bs;
15640ac07820SSatish Balay       for (k=0; k<bs; k++) {
156597e5c40aSBarry Smith         ierr = MatSetValues_MPIBAIJ(B,1,&col,bs,rvals,a,INSERT_VALUES);CHKERRQ(ierr);
156626fbe8dcSKarl Rupp         col++;
156726fbe8dcSKarl Rupp         a += bs;
15680ac07820SSatish Balay       }
15690ac07820SSatish Balay     }
15700ac07820SSatish Balay   }
1571606d414cSSatish Balay   ierr = PetscFree(rvals);CHKERRQ(ierr);
15720ac07820SSatish Balay   ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
15730ac07820SSatish Balay   ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
15740ac07820SSatish Balay 
1575cf37664fSBarry Smith   if (reuse == MAT_INITIAL_MATRIX || reuse == MAT_REUSE_MATRIX) *matout = B;
157626fbe8dcSKarl Rupp   else {
157728be2f97SBarry Smith     ierr = MatHeaderMerge(A,&B);CHKERRQ(ierr);
15780ac07820SSatish Balay   }
15793a40ed3dSBarry Smith   PetscFunctionReturn(0);
15800ac07820SSatish Balay }
15810e95ebc0SSatish Balay 
1582dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_MPIBAIJ(Mat mat,Vec ll,Vec rr)
15830e95ebc0SSatish Balay {
158436c4a09eSSatish Balay   Mat_MPIBAIJ    *baij = (Mat_MPIBAIJ*)mat->data;
158536c4a09eSSatish Balay   Mat            a     = baij->A,b = baij->B;
1586dfbe8321SBarry Smith   PetscErrorCode ierr;
1587b24ad042SBarry Smith   PetscInt       s1,s2,s3;
15880e95ebc0SSatish Balay 
1589d64ed03dSBarry Smith   PetscFunctionBegin;
159036c4a09eSSatish Balay   ierr = MatGetLocalSize(mat,&s2,&s3);CHKERRQ(ierr);
159136c4a09eSSatish Balay   if (rr) {
159236c4a09eSSatish Balay     ierr = VecGetLocalSize(rr,&s1);CHKERRQ(ierr);
1593e32f2f54SBarry Smith     if (s1!=s3) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"right vector non-conforming local size");
159436c4a09eSSatish Balay     /* Overlap communication with computation. */
1595ca9f406cSSatish Balay     ierr = VecScatterBegin(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
159636c4a09eSSatish Balay   }
15970e95ebc0SSatish Balay   if (ll) {
15980e95ebc0SSatish Balay     ierr = VecGetLocalSize(ll,&s1);CHKERRQ(ierr);
1599e32f2f54SBarry Smith     if (s1!=s2) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"left vector non-conforming local size");
16000298fd71SBarry Smith     ierr = (*b->ops->diagonalscale)(b,ll,NULL);CHKERRQ(ierr);
16010e95ebc0SSatish Balay   }
160236c4a09eSSatish Balay   /* scale  the diagonal block */
160336c4a09eSSatish Balay   ierr = (*a->ops->diagonalscale)(a,ll,rr);CHKERRQ(ierr);
160436c4a09eSSatish Balay 
160536c4a09eSSatish Balay   if (rr) {
160636c4a09eSSatish Balay     /* Do a scatter end and then right scale the off-diagonal block */
1607ca9f406cSSatish Balay     ierr = VecScatterEnd(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
16080298fd71SBarry Smith     ierr = (*b->ops->diagonalscale)(b,NULL,baij->lvec);CHKERRQ(ierr);
160936c4a09eSSatish Balay   }
16103a40ed3dSBarry Smith   PetscFunctionReturn(0);
16110e95ebc0SSatish Balay }
16120e95ebc0SSatish Balay 
16132b40b63fSBarry Smith PetscErrorCode MatZeroRows_MPIBAIJ(Mat A,PetscInt N,const PetscInt rows[],PetscScalar diag,Vec x,Vec b)
16140ac07820SSatish Balay {
16150ac07820SSatish Balay   Mat_MPIBAIJ   *l      = (Mat_MPIBAIJ *) A->data;
161665a92638SMatthew G. Knepley   PetscInt      *lrows;
16176e520ac8SStefano Zampini   PetscInt       r, len;
161894342113SStefano Zampini   PetscBool      cong;
16196849ba73SBarry Smith   PetscErrorCode ierr;
16200ac07820SSatish Balay 
1621d64ed03dSBarry Smith   PetscFunctionBegin;
16226e520ac8SStefano Zampini   /* get locally owned rows */
16236e520ac8SStefano Zampini   ierr = MatZeroRowsMapLocal_Private(A,N,rows,&len,&lrows);CHKERRQ(ierr);
162497b48c8fSBarry Smith   /* fix right hand side if needed */
162597b48c8fSBarry Smith   if (x && b) {
162665a92638SMatthew G. Knepley     const PetscScalar *xx;
162765a92638SMatthew G. Knepley     PetscScalar       *bb;
162865a92638SMatthew G. Knepley 
162997b48c8fSBarry Smith     ierr = VecGetArrayRead(x,&xx);CHKERRQ(ierr);
163097b48c8fSBarry Smith     ierr = VecGetArray(b,&bb);CHKERRQ(ierr);
163165a92638SMatthew G. Knepley     for (r = 0; r < len; ++r) bb[lrows[r]] = diag*xx[lrows[r]];
163297b48c8fSBarry Smith     ierr = VecRestoreArrayRead(x,&xx);CHKERRQ(ierr);
163397b48c8fSBarry Smith     ierr = VecRestoreArray(b,&bb);CHKERRQ(ierr);
163497b48c8fSBarry Smith   }
163597b48c8fSBarry Smith 
16360ac07820SSatish Balay   /* actually zap the local rows */
163772dacd9aSBarry Smith   /*
163872dacd9aSBarry Smith         Zero the required rows. If the "diagonal block" of the matrix
1639a8c7a070SBarry Smith      is square and the user wishes to set the diagonal we use separate
164072dacd9aSBarry Smith      code so that MatSetValues() is not called for each diagonal allocating
164172dacd9aSBarry Smith      new memory, thus calling lots of mallocs and slowing things down.
164272dacd9aSBarry Smith 
164372dacd9aSBarry Smith   */
16449c957beeSSatish Balay   /* must zero l->B before l->A because the (diag) case below may put values into l->B*/
1645a34163a4SJed Brown   ierr = MatZeroRows_SeqBAIJ(l->B,len,lrows,0.0,NULL,NULL);CHKERRQ(ierr);
164694342113SStefano Zampini   ierr = MatHasCongruentLayouts(A,&cong);CHKERRQ(ierr);
164794342113SStefano Zampini   if ((diag != 0.0) && cong) {
1648a34163a4SJed Brown     ierr = MatZeroRows_SeqBAIJ(l->A,len,lrows,diag,NULL,NULL);CHKERRQ(ierr);
1649f4df32b1SMatthew Knepley   } else if (diag != 0.0) {
165065a92638SMatthew G. Knepley     ierr = MatZeroRows_SeqBAIJ(l->A,len,lrows,0.0,0,0);CHKERRQ(ierr);
1651e7e72b3dSBarry Smith     if (((Mat_SeqBAIJ*)l->A->data)->nonew) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"MatZeroRows() on rectangular matrices cannot be used with the Mat options \n\
1652512a5fc5SBarry Smith        MAT_NEW_NONZERO_LOCATIONS,MAT_NEW_NONZERO_LOCATION_ERR,MAT_NEW_NONZERO_ALLOCATION_ERR");
165365a92638SMatthew G. Knepley     for (r = 0; r < len; ++r) {
165465a92638SMatthew G. Knepley       const PetscInt row = lrows[r] + A->rmap->rstart;
1655f4df32b1SMatthew Knepley       ierr = MatSetValues(A,1,&row,1,&row,&diag,INSERT_VALUES);CHKERRQ(ierr);
1656a07cd24cSSatish Balay     }
1657a07cd24cSSatish Balay     ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
1658a07cd24cSSatish Balay     ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
16599c957beeSSatish Balay   } else {
1660a34163a4SJed Brown     ierr = MatZeroRows_SeqBAIJ(l->A,len,lrows,0.0,NULL,NULL);CHKERRQ(ierr);
1661a07cd24cSSatish Balay   }
1662606d414cSSatish Balay   ierr = PetscFree(lrows);CHKERRQ(ierr);
16634f9cfa9eSBarry Smith 
16644f9cfa9eSBarry Smith   /* only change matrix nonzero state if pattern was allowed to be changed */
16654f9cfa9eSBarry Smith   if (!((Mat_SeqBAIJ*)(l->A->data))->keepnonzeropattern) {
1666e56f5c9eSBarry Smith     PetscObjectState state = l->A->nonzerostate + l->B->nonzerostate;
1667b2566f29SBarry Smith     ierr = MPIU_Allreduce(&state,&A->nonzerostate,1,MPIU_INT64,MPI_SUM,PetscObjectComm((PetscObject)A));CHKERRQ(ierr);
1668e56f5c9eSBarry Smith   }
16693a40ed3dSBarry Smith   PetscFunctionReturn(0);
16700ac07820SSatish Balay }
167172dacd9aSBarry Smith 
16726f0a72daSMatthew G. Knepley PetscErrorCode MatZeroRowsColumns_MPIBAIJ(Mat A,PetscInt N,const PetscInt rows[],PetscScalar diag,Vec x,Vec b)
16736f0a72daSMatthew G. Knepley {
16746f0a72daSMatthew G. Knepley   Mat_MPIBAIJ       *l = (Mat_MPIBAIJ*)A->data;
16756f0a72daSMatthew G. Knepley   PetscErrorCode    ierr;
1676131c27b5Sprj-   PetscMPIInt       n = A->rmap->n,p = 0;
1677131c27b5Sprj-   PetscInt          i,j,k,r,len = 0,row,col,count;
16786f0a72daSMatthew G. Knepley   PetscInt          *lrows,*owners = A->rmap->range;
16796f0a72daSMatthew G. Knepley   PetscSFNode       *rrows;
16806f0a72daSMatthew G. Knepley   PetscSF           sf;
16816f0a72daSMatthew G. Knepley   const PetscScalar *xx;
16826f0a72daSMatthew G. Knepley   PetscScalar       *bb,*mask;
16836f0a72daSMatthew G. Knepley   Vec               xmask,lmask;
16846f0a72daSMatthew G. Knepley   Mat_SeqBAIJ       *baij = (Mat_SeqBAIJ*)l->B->data;
16856f0a72daSMatthew G. Knepley   PetscInt           bs = A->rmap->bs, bs2 = baij->bs2;
16866f0a72daSMatthew G. Knepley   PetscScalar       *aa;
16876f0a72daSMatthew G. Knepley 
16886f0a72daSMatthew G. Knepley   PetscFunctionBegin;
16896f0a72daSMatthew G. Knepley   /* Create SF where leaves are input rows and roots are owned rows */
16906f0a72daSMatthew G. Knepley   ierr = PetscMalloc1(n, &lrows);CHKERRQ(ierr);
16916f0a72daSMatthew G. Knepley   for (r = 0; r < n; ++r) lrows[r] = -1;
16926f0a72daSMatthew G. Knepley   ierr = PetscMalloc1(N, &rrows);CHKERRQ(ierr);
16936f0a72daSMatthew G. Knepley   for (r = 0; r < N; ++r) {
16946f0a72daSMatthew G. Knepley     const PetscInt idx   = rows[r];
16955ba17502SJed Brown     if (idx < 0 || A->rmap->N <= idx) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row %D out of range [0,%D)",idx,A->rmap->N);
16965ba17502SJed Brown     if (idx < owners[p] || owners[p+1] <= idx) { /* short-circuit the search if the last p owns this row too */
16975ba17502SJed Brown       ierr = PetscLayoutFindOwner(A->rmap,idx,&p);CHKERRQ(ierr);
16985ba17502SJed Brown     }
16996f0a72daSMatthew G. Knepley     rrows[r].rank  = p;
17006f0a72daSMatthew G. Knepley     rrows[r].index = rows[r] - owners[p];
17016f0a72daSMatthew G. Knepley   }
17026f0a72daSMatthew G. Knepley   ierr = PetscSFCreate(PetscObjectComm((PetscObject) A), &sf);CHKERRQ(ierr);
17036f0a72daSMatthew G. Knepley   ierr = PetscSFSetGraph(sf, n, N, NULL, PETSC_OWN_POINTER, rrows, PETSC_OWN_POINTER);CHKERRQ(ierr);
17046f0a72daSMatthew G. Knepley   /* Collect flags for rows to be zeroed */
17056f0a72daSMatthew G. Knepley   ierr = PetscSFReduceBegin(sf, MPIU_INT, (PetscInt *) rows, lrows, MPI_LOR);CHKERRQ(ierr);
17066f0a72daSMatthew G. Knepley   ierr = PetscSFReduceEnd(sf, MPIU_INT, (PetscInt *) rows, lrows, MPI_LOR);CHKERRQ(ierr);
17076f0a72daSMatthew G. Knepley   ierr = PetscSFDestroy(&sf);CHKERRQ(ierr);
17086f0a72daSMatthew G. Knepley   /* Compress and put in row numbers */
17096f0a72daSMatthew G. Knepley   for (r = 0; r < n; ++r) if (lrows[r] >= 0) lrows[len++] = r;
17106f0a72daSMatthew G. Knepley   /* zero diagonal part of matrix */
17116f0a72daSMatthew G. Knepley   ierr = MatZeroRowsColumns(l->A,len,lrows,diag,x,b);CHKERRQ(ierr);
17126f0a72daSMatthew G. Knepley   /* handle off diagonal part of matrix */
17132a7a6963SBarry Smith   ierr = MatCreateVecs(A,&xmask,NULL);CHKERRQ(ierr);
17146f0a72daSMatthew G. Knepley   ierr = VecDuplicate(l->lvec,&lmask);CHKERRQ(ierr);
17156f0a72daSMatthew G. Knepley   ierr = VecGetArray(xmask,&bb);CHKERRQ(ierr);
17166f0a72daSMatthew G. Knepley   for (i=0; i<len; i++) bb[lrows[i]] = 1;
17176f0a72daSMatthew G. Knepley   ierr = VecRestoreArray(xmask,&bb);CHKERRQ(ierr);
17186f0a72daSMatthew G. Knepley   ierr = VecScatterBegin(l->Mvctx,xmask,lmask,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
17196f0a72daSMatthew G. Knepley   ierr = VecScatterEnd(l->Mvctx,xmask,lmask,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
17206f0a72daSMatthew G. Knepley   ierr = VecDestroy(&xmask);CHKERRQ(ierr);
17216f0a72daSMatthew G. Knepley   if (x) {
17226f0a72daSMatthew G. Knepley     ierr = VecScatterBegin(l->Mvctx,x,l->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
17236f0a72daSMatthew G. Knepley     ierr = VecScatterEnd(l->Mvctx,x,l->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
17246f0a72daSMatthew G. Knepley     ierr = VecGetArrayRead(l->lvec,&xx);CHKERRQ(ierr);
17256f0a72daSMatthew G. Knepley     ierr = VecGetArray(b,&bb);CHKERRQ(ierr);
17266f0a72daSMatthew G. Knepley   }
17276f0a72daSMatthew G. Knepley   ierr = VecGetArray(lmask,&mask);CHKERRQ(ierr);
17286f0a72daSMatthew G. Knepley   /* remove zeroed rows of off diagonal matrix */
17296f0a72daSMatthew G. Knepley   for (i = 0; i < len; ++i) {
17306f0a72daSMatthew G. Knepley     row   = lrows[i];
17316f0a72daSMatthew G. Knepley     count = (baij->i[row/bs +1] - baij->i[row/bs])*bs;
17326f0a72daSMatthew G. Knepley     aa    = ((MatScalar*)(baij->a)) + baij->i[row/bs]*bs2 + (row%bs);
17336f0a72daSMatthew G. Knepley     for (k = 0; k < count; ++k) {
17346f0a72daSMatthew G. Knepley       aa[0] = 0.0;
17356f0a72daSMatthew G. Knepley       aa   += bs;
17366f0a72daSMatthew G. Knepley     }
17376f0a72daSMatthew G. Knepley   }
17386f0a72daSMatthew G. Knepley   /* loop over all elements of off process part of matrix zeroing removed columns*/
17396f0a72daSMatthew G. Knepley   for (i = 0; i < l->B->rmap->N; ++i) {
17406f0a72daSMatthew G. Knepley     row = i/bs;
17416f0a72daSMatthew G. Knepley     for (j = baij->i[row]; j < baij->i[row+1]; ++j) {
17426f0a72daSMatthew G. Knepley       for (k = 0; k < bs; ++k) {
17436f0a72daSMatthew G. Knepley         col = bs*baij->j[j] + k;
17446f0a72daSMatthew G. Knepley         if (PetscAbsScalar(mask[col])) {
17456f0a72daSMatthew G. Knepley           aa = ((MatScalar*)(baij->a)) + j*bs2 + (i%bs) + bs*k;
174689ae1891SBarry Smith           if (x) bb[i] -= aa[0]*xx[col];
17476f0a72daSMatthew G. Knepley           aa[0] = 0.0;
17486f0a72daSMatthew G. Knepley         }
17496f0a72daSMatthew G. Knepley       }
17506f0a72daSMatthew G. Knepley     }
17516f0a72daSMatthew G. Knepley   }
17526f0a72daSMatthew G. Knepley   if (x) {
17536f0a72daSMatthew G. Knepley     ierr = VecRestoreArray(b,&bb);CHKERRQ(ierr);
17546f0a72daSMatthew G. Knepley     ierr = VecRestoreArrayRead(l->lvec,&xx);CHKERRQ(ierr);
17556f0a72daSMatthew G. Knepley   }
17566f0a72daSMatthew G. Knepley   ierr = VecRestoreArray(lmask,&mask);CHKERRQ(ierr);
17576f0a72daSMatthew G. Knepley   ierr = VecDestroy(&lmask);CHKERRQ(ierr);
17586f0a72daSMatthew G. Knepley   ierr = PetscFree(lrows);CHKERRQ(ierr);
17594f9cfa9eSBarry Smith 
17604f9cfa9eSBarry Smith   /* only change matrix nonzero state if pattern was allowed to be changed */
17614f9cfa9eSBarry Smith   if (!((Mat_SeqBAIJ*)(l->A->data))->keepnonzeropattern) {
17624f9cfa9eSBarry Smith     PetscObjectState state = l->A->nonzerostate + l->B->nonzerostate;
1763b2566f29SBarry Smith     ierr = MPIU_Allreduce(&state,&A->nonzerostate,1,MPIU_INT64,MPI_SUM,PetscObjectComm((PetscObject)A));CHKERRQ(ierr);
17644f9cfa9eSBarry Smith   }
17656f0a72daSMatthew G. Knepley   PetscFunctionReturn(0);
17666f0a72daSMatthew G. Knepley }
17676f0a72daSMatthew G. Knepley 
1768dfbe8321SBarry Smith PetscErrorCode MatSetUnfactored_MPIBAIJ(Mat A)
1769bb5a7306SBarry Smith {
1770bb5a7306SBarry Smith   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)A->data;
1771dfbe8321SBarry Smith   PetscErrorCode ierr;
1772d64ed03dSBarry Smith 
1773d64ed03dSBarry Smith   PetscFunctionBegin;
1774bb5a7306SBarry Smith   ierr = MatSetUnfactored(a->A);CHKERRQ(ierr);
17753a40ed3dSBarry Smith   PetscFunctionReturn(0);
1776bb5a7306SBarry Smith }
1777bb5a7306SBarry Smith 
17786849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIBAIJ(Mat,MatDuplicateOption,Mat*);
17790ac07820SSatish Balay 
1780ace3abfcSBarry Smith PetscErrorCode MatEqual_MPIBAIJ(Mat A,Mat B,PetscBool  *flag)
17817fc3c18eSBarry Smith {
17827fc3c18eSBarry Smith   Mat_MPIBAIJ    *matB = (Mat_MPIBAIJ*)B->data,*matA = (Mat_MPIBAIJ*)A->data;
17837fc3c18eSBarry Smith   Mat            a,b,c,d;
1784ace3abfcSBarry Smith   PetscBool      flg;
1785dfbe8321SBarry Smith   PetscErrorCode ierr;
17867fc3c18eSBarry Smith 
17877fc3c18eSBarry Smith   PetscFunctionBegin;
17887fc3c18eSBarry Smith   a = matA->A; b = matA->B;
17897fc3c18eSBarry Smith   c = matB->A; d = matB->B;
17907fc3c18eSBarry Smith 
17917fc3c18eSBarry Smith   ierr = MatEqual(a,c,&flg);CHKERRQ(ierr);
1792abc0a331SBarry Smith   if (flg) {
17937fc3c18eSBarry Smith     ierr = MatEqual(b,d,&flg);CHKERRQ(ierr);
17947fc3c18eSBarry Smith   }
1795b2566f29SBarry Smith   ierr = MPIU_Allreduce(&flg,flag,1,MPIU_BOOL,MPI_LAND,PetscObjectComm((PetscObject)A));CHKERRQ(ierr);
17967fc3c18eSBarry Smith   PetscFunctionReturn(0);
17977fc3c18eSBarry Smith }
17987fc3c18eSBarry Smith 
17993c896bc6SHong Zhang PetscErrorCode MatCopy_MPIBAIJ(Mat A,Mat B,MatStructure str)
18003c896bc6SHong Zhang {
18013c896bc6SHong Zhang   PetscErrorCode ierr;
18023c896bc6SHong Zhang   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)A->data;
18033c896bc6SHong Zhang   Mat_MPIBAIJ    *b = (Mat_MPIBAIJ*)B->data;
18043c896bc6SHong Zhang 
18053c896bc6SHong Zhang   PetscFunctionBegin;
18063c896bc6SHong Zhang   /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */
18073c896bc6SHong Zhang   if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) {
18083c896bc6SHong Zhang     ierr = MatCopy_Basic(A,B,str);CHKERRQ(ierr);
18093c896bc6SHong Zhang   } else {
18103c896bc6SHong Zhang     ierr = MatCopy(a->A,b->A,str);CHKERRQ(ierr);
18113c896bc6SHong Zhang     ierr = MatCopy(a->B,b->B,str);CHKERRQ(ierr);
18123c896bc6SHong Zhang   }
1813cdc753b6SBarry Smith   ierr = PetscObjectStateIncrease((PetscObject)B);CHKERRQ(ierr);
18143c896bc6SHong Zhang   PetscFunctionReturn(0);
18153c896bc6SHong Zhang }
1816273d9f13SBarry Smith 
18174994cf47SJed Brown PetscErrorCode MatSetUp_MPIBAIJ(Mat A)
1818273d9f13SBarry Smith {
1819dfbe8321SBarry Smith   PetscErrorCode ierr;
1820273d9f13SBarry Smith 
1821273d9f13SBarry Smith   PetscFunctionBegin;
1822535b19f3SBarry Smith   ierr = MatMPIBAIJSetPreallocation(A,A->rmap->bs,PETSC_DEFAULT,0,PETSC_DEFAULT,0);CHKERRQ(ierr);
1823273d9f13SBarry Smith   PetscFunctionReturn(0);
1824273d9f13SBarry Smith }
1825273d9f13SBarry Smith 
18264de5dceeSHong Zhang PetscErrorCode MatAXPYGetPreallocation_MPIBAIJ(Mat Y,const PetscInt *yltog,Mat X,const PetscInt *xltog,PetscInt *nnz)
18274de5dceeSHong Zhang {
1828001ddc4fSHong Zhang   PetscErrorCode ierr;
1829001ddc4fSHong Zhang   PetscInt       bs = Y->rmap->bs,m = Y->rmap->N/bs;
18304de5dceeSHong Zhang   Mat_SeqBAIJ    *x = (Mat_SeqBAIJ*)X->data;
18314de5dceeSHong Zhang   Mat_SeqBAIJ    *y = (Mat_SeqBAIJ*)Y->data;
18324de5dceeSHong Zhang 
18334de5dceeSHong Zhang   PetscFunctionBegin;
1834001ddc4fSHong Zhang   ierr = MatAXPYGetPreallocation_MPIX_private(m,x->i,x->j,xltog,y->i,y->j,yltog,nnz);CHKERRQ(ierr);
18354de5dceeSHong Zhang   PetscFunctionReturn(0);
18364de5dceeSHong Zhang }
18374de5dceeSHong Zhang 
18384fe895cdSHong Zhang PetscErrorCode MatAXPY_MPIBAIJ(Mat Y,PetscScalar a,Mat X,MatStructure str)
18394fe895cdSHong Zhang {
18404fe895cdSHong Zhang   PetscErrorCode ierr;
18414fe895cdSHong Zhang   Mat_MPIBAIJ    *xx=(Mat_MPIBAIJ*)X->data,*yy=(Mat_MPIBAIJ*)Y->data;
18424fe895cdSHong Zhang   PetscBLASInt   bnz,one=1;
18434fe895cdSHong Zhang   Mat_SeqBAIJ    *x,*y;
1844b31f67cfSBarry Smith   PetscInt       bs2 = Y->rmap->bs*Y->rmap->bs;
18454fe895cdSHong Zhang 
18464fe895cdSHong Zhang   PetscFunctionBegin;
18474fe895cdSHong Zhang   if (str == SAME_NONZERO_PATTERN) {
18484fe895cdSHong Zhang     PetscScalar alpha = a;
18494fe895cdSHong Zhang     x    = (Mat_SeqBAIJ*)xx->A->data;
18504fe895cdSHong Zhang     y    = (Mat_SeqBAIJ*)yy->A->data;
1851b31f67cfSBarry Smith     ierr = PetscBLASIntCast(x->nz*bs2,&bnz);CHKERRQ(ierr);
18528b83055fSJed Brown     PetscStackCallBLAS("BLASaxpy",BLASaxpy_(&bnz,&alpha,x->a,&one,y->a,&one));
18534fe895cdSHong Zhang     x    = (Mat_SeqBAIJ*)xx->B->data;
18544fe895cdSHong Zhang     y    = (Mat_SeqBAIJ*)yy->B->data;
1855b31f67cfSBarry Smith     ierr = PetscBLASIntCast(x->nz*bs2,&bnz);CHKERRQ(ierr);
18568b83055fSJed Brown     PetscStackCallBLAS("BLASaxpy",BLASaxpy_(&bnz,&alpha,x->a,&one,y->a,&one));
1857a3fa217bSJose E. Roman     ierr = PetscObjectStateIncrease((PetscObject)Y);CHKERRQ(ierr);
1858ab784542SHong Zhang   } else if (str == SUBSET_NONZERO_PATTERN) { /* nonzeros of X is a subset of Y's */
1859ab784542SHong Zhang     ierr = MatAXPY_Basic(Y,a,X,str);CHKERRQ(ierr);
18604fe895cdSHong Zhang   } else {
18614de5dceeSHong Zhang     Mat      B;
18624de5dceeSHong Zhang     PetscInt *nnz_d,*nnz_o,bs=Y->rmap->bs;
18634de5dceeSHong Zhang     ierr = PetscMalloc1(yy->A->rmap->N,&nnz_d);CHKERRQ(ierr);
18644de5dceeSHong Zhang     ierr = PetscMalloc1(yy->B->rmap->N,&nnz_o);CHKERRQ(ierr);
18654de5dceeSHong Zhang     ierr = MatCreate(PetscObjectComm((PetscObject)Y),&B);CHKERRQ(ierr);
18664de5dceeSHong Zhang     ierr = PetscObjectSetName((PetscObject)B,((PetscObject)Y)->name);CHKERRQ(ierr);
18674de5dceeSHong Zhang     ierr = MatSetSizes(B,Y->rmap->n,Y->cmap->n,Y->rmap->N,Y->cmap->N);CHKERRQ(ierr);
18684de5dceeSHong Zhang     ierr = MatSetBlockSizesFromMats(B,Y,Y);CHKERRQ(ierr);
18694de5dceeSHong Zhang     ierr = MatSetType(B,MATMPIBAIJ);CHKERRQ(ierr);
18704de5dceeSHong Zhang     ierr = MatAXPYGetPreallocation_SeqBAIJ(yy->A,xx->A,nnz_d);CHKERRQ(ierr);
18714de5dceeSHong Zhang     ierr = MatAXPYGetPreallocation_MPIBAIJ(yy->B,yy->garray,xx->B,xx->garray,nnz_o);CHKERRQ(ierr);
18724de5dceeSHong Zhang     ierr = MatMPIBAIJSetPreallocation(B,bs,0,nnz_d,0,nnz_o);CHKERRQ(ierr);
18734de5dceeSHong Zhang     /* MatAXPY_BasicWithPreallocation() for BAIJ matrix is much slower than AIJ, even for bs=1 ! */
18744de5dceeSHong Zhang     ierr = MatAXPY_BasicWithPreallocation(B,Y,a,X,str);CHKERRQ(ierr);
187528be2f97SBarry Smith     ierr = MatHeaderReplace(Y,&B);CHKERRQ(ierr);
18764de5dceeSHong Zhang     ierr = PetscFree(nnz_d);CHKERRQ(ierr);
18774de5dceeSHong Zhang     ierr = PetscFree(nnz_o);CHKERRQ(ierr);
18784fe895cdSHong Zhang   }
18794fe895cdSHong Zhang   PetscFunctionReturn(0);
18804fe895cdSHong Zhang }
18814fe895cdSHong Zhang 
188299cafbc1SBarry Smith PetscErrorCode MatRealPart_MPIBAIJ(Mat A)
188399cafbc1SBarry Smith {
188499cafbc1SBarry Smith   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)A->data;
188599cafbc1SBarry Smith   PetscErrorCode ierr;
188699cafbc1SBarry Smith 
188799cafbc1SBarry Smith   PetscFunctionBegin;
188899cafbc1SBarry Smith   ierr = MatRealPart(a->A);CHKERRQ(ierr);
188999cafbc1SBarry Smith   ierr = MatRealPart(a->B);CHKERRQ(ierr);
189099cafbc1SBarry Smith   PetscFunctionReturn(0);
189199cafbc1SBarry Smith }
189299cafbc1SBarry Smith 
189399cafbc1SBarry Smith PetscErrorCode MatImaginaryPart_MPIBAIJ(Mat A)
189499cafbc1SBarry Smith {
189599cafbc1SBarry Smith   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)A->data;
189699cafbc1SBarry Smith   PetscErrorCode ierr;
189799cafbc1SBarry Smith 
189899cafbc1SBarry Smith   PetscFunctionBegin;
189999cafbc1SBarry Smith   ierr = MatImaginaryPart(a->A);CHKERRQ(ierr);
190099cafbc1SBarry Smith   ierr = MatImaginaryPart(a->B);CHKERRQ(ierr);
190199cafbc1SBarry Smith   PetscFunctionReturn(0);
190299cafbc1SBarry Smith }
190399cafbc1SBarry Smith 
19047dae84e0SHong Zhang PetscErrorCode MatCreateSubMatrix_MPIBAIJ(Mat mat,IS isrow,IS iscol,MatReuse call,Mat *newmat)
19054aa3045dSJed Brown {
19064aa3045dSJed Brown   PetscErrorCode ierr;
19074aa3045dSJed Brown   IS             iscol_local;
19084aa3045dSJed Brown   PetscInt       csize;
19094aa3045dSJed Brown 
19104aa3045dSJed Brown   PetscFunctionBegin;
19114aa3045dSJed Brown   ierr = ISGetLocalSize(iscol,&csize);CHKERRQ(ierr);
1912b79d0421SJed Brown   if (call == MAT_REUSE_MATRIX) {
1913b79d0421SJed Brown     ierr = PetscObjectQuery((PetscObject)*newmat,"ISAllGather",(PetscObject*)&iscol_local);CHKERRQ(ierr);
1914e32f2f54SBarry Smith     if (!iscol_local) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Submatrix passed in was not used before, cannot reuse");
1915b79d0421SJed Brown   } else {
19164aa3045dSJed Brown     ierr = ISAllGather(iscol,&iscol_local);CHKERRQ(ierr);
1917b79d0421SJed Brown   }
19187dae84e0SHong Zhang   ierr = MatCreateSubMatrix_MPIBAIJ_Private(mat,isrow,iscol_local,csize,call,newmat);CHKERRQ(ierr);
1919b79d0421SJed Brown   if (call == MAT_INITIAL_MATRIX) {
1920b79d0421SJed Brown     ierr = PetscObjectCompose((PetscObject)*newmat,"ISAllGather",(PetscObject)iscol_local);CHKERRQ(ierr);
19216bf464f9SBarry Smith     ierr = ISDestroy(&iscol_local);CHKERRQ(ierr);
1922b79d0421SJed Brown   }
19234aa3045dSJed Brown   PetscFunctionReturn(0);
19244aa3045dSJed Brown }
192517df9f7cSHong Zhang 
192682094794SBarry Smith /*
192782094794SBarry Smith   Not great since it makes two copies of the submatrix, first an SeqBAIJ
192882094794SBarry Smith   in local and then by concatenating the local matrices the end result.
19297dae84e0SHong Zhang   Writing it directly would be much like MatCreateSubMatrices_MPIBAIJ().
19308f46ffcaSHong Zhang   This routine is used for BAIJ and SBAIJ matrices (unfortunate dependency).
193182094794SBarry Smith */
19327dae84e0SHong Zhang PetscErrorCode MatCreateSubMatrix_MPIBAIJ_Private(Mat mat,IS isrow,IS iscol,PetscInt csize,MatReuse call,Mat *newmat)
193382094794SBarry Smith {
193482094794SBarry Smith   PetscErrorCode ierr;
193582094794SBarry Smith   PetscMPIInt    rank,size;
193682094794SBarry Smith   PetscInt       i,m,n,rstart,row,rend,nz,*cwork,j,bs;
1937c9ffca76SHong Zhang   PetscInt       *ii,*jj,nlocal,*dlens,*olens,dlen,olen,jend,mglobal;
193829dcf524SDmitry Karpeev   Mat            M,Mreuse;
193982094794SBarry Smith   MatScalar      *vwork,*aa;
1940ce94432eSBarry Smith   MPI_Comm       comm;
194129dcf524SDmitry Karpeev   IS             isrow_new, iscol_new;
194282094794SBarry Smith   Mat_SeqBAIJ    *aij;
194382094794SBarry Smith 
194482094794SBarry Smith   PetscFunctionBegin;
1945ce94432eSBarry Smith   ierr = PetscObjectGetComm((PetscObject)mat,&comm);CHKERRQ(ierr);
194682094794SBarry Smith   ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr);
194782094794SBarry Smith   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
194829dcf524SDmitry Karpeev   /* The compression and expansion should be avoided. Doesn't point
194929dcf524SDmitry Karpeev      out errors, might change the indices, hence buggey */
195029dcf524SDmitry Karpeev   ierr = ISCompressIndicesGeneral(mat->rmap->N,mat->rmap->n,mat->rmap->bs,1,&isrow,&isrow_new);CHKERRQ(ierr);
195129dcf524SDmitry Karpeev   ierr = ISCompressIndicesGeneral(mat->cmap->N,mat->cmap->n,mat->cmap->bs,1,&iscol,&iscol_new);CHKERRQ(ierr);
195282094794SBarry Smith 
195382094794SBarry Smith   if (call ==  MAT_REUSE_MATRIX) {
195482094794SBarry Smith     ierr = PetscObjectQuery((PetscObject)*newmat,"SubMatrix",(PetscObject*)&Mreuse);CHKERRQ(ierr);
1955e32f2f54SBarry Smith     if (!Mreuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Submatrix passed in was not used before, cannot reuse");
19567dae84e0SHong Zhang     ierr = MatCreateSubMatrices_MPIBAIJ_local(mat,1,&isrow_new,&iscol_new,MAT_REUSE_MATRIX,&Mreuse);CHKERRQ(ierr);
195782094794SBarry Smith   } else {
19587dae84e0SHong Zhang     ierr = MatCreateSubMatrices_MPIBAIJ_local(mat,1,&isrow_new,&iscol_new,MAT_INITIAL_MATRIX,&Mreuse);CHKERRQ(ierr);
195982094794SBarry Smith   }
196029dcf524SDmitry Karpeev   ierr = ISDestroy(&isrow_new);CHKERRQ(ierr);
196129dcf524SDmitry Karpeev   ierr = ISDestroy(&iscol_new);CHKERRQ(ierr);
196282094794SBarry Smith   /*
196382094794SBarry Smith       m - number of local rows
196482094794SBarry Smith       n - number of columns (same on all processors)
196582094794SBarry Smith       rstart - first row in new global matrix generated
196682094794SBarry Smith   */
196782094794SBarry Smith   ierr = MatGetBlockSize(mat,&bs);CHKERRQ(ierr);
196882094794SBarry Smith   ierr = MatGetSize(Mreuse,&m,&n);CHKERRQ(ierr);
196982094794SBarry Smith   m    = m/bs;
197082094794SBarry Smith   n    = n/bs;
197182094794SBarry Smith 
197282094794SBarry Smith   if (call == MAT_INITIAL_MATRIX) {
197382094794SBarry Smith     aij = (Mat_SeqBAIJ*)(Mreuse)->data;
197482094794SBarry Smith     ii  = aij->i;
197582094794SBarry Smith     jj  = aij->j;
197682094794SBarry Smith 
197782094794SBarry Smith     /*
197882094794SBarry Smith         Determine the number of non-zeros in the diagonal and off-diagonal
197982094794SBarry Smith         portions of the matrix in order to do correct preallocation
198082094794SBarry Smith     */
198182094794SBarry Smith 
198282094794SBarry Smith     /* first get start and end of "diagonal" columns */
198382094794SBarry Smith     if (csize == PETSC_DECIDE) {
198482094794SBarry Smith       ierr = ISGetSize(isrow,&mglobal);CHKERRQ(ierr);
198582094794SBarry Smith       if (mglobal == n*bs) { /* square matrix */
198682094794SBarry Smith         nlocal = m;
198782094794SBarry Smith       } else {
198882094794SBarry Smith         nlocal = n/size + ((n % size) > rank);
198982094794SBarry Smith       }
199082094794SBarry Smith     } else {
199182094794SBarry Smith       nlocal = csize/bs;
199282094794SBarry Smith     }
199382094794SBarry Smith     ierr   = MPI_Scan(&nlocal,&rend,1,MPIU_INT,MPI_SUM,comm);CHKERRQ(ierr);
199482094794SBarry Smith     rstart = rend - nlocal;
199565e19b50SBarry Smith     if (rank == size - 1 && rend != n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Local column sizes %D do not add up to total number of columns %D",rend,n);
199682094794SBarry Smith 
199782094794SBarry Smith     /* next, compute all the lengths */
1998dcca6d9dSJed Brown     ierr  = PetscMalloc2(m+1,&dlens,m+1,&olens);CHKERRQ(ierr);
199982094794SBarry Smith     for (i=0; i<m; i++) {
200082094794SBarry Smith       jend = ii[i+1] - ii[i];
200182094794SBarry Smith       olen = 0;
200282094794SBarry Smith       dlen = 0;
200382094794SBarry Smith       for (j=0; j<jend; j++) {
200482094794SBarry Smith         if (*jj < rstart || *jj >= rend) olen++;
200582094794SBarry Smith         else dlen++;
200682094794SBarry Smith         jj++;
200782094794SBarry Smith       }
200882094794SBarry Smith       olens[i] = olen;
200982094794SBarry Smith       dlens[i] = dlen;
201082094794SBarry Smith     }
201182094794SBarry Smith     ierr = MatCreate(comm,&M);CHKERRQ(ierr);
201282094794SBarry Smith     ierr = MatSetSizes(M,bs*m,bs*nlocal,PETSC_DECIDE,bs*n);CHKERRQ(ierr);
201382094794SBarry Smith     ierr = MatSetType(M,((PetscObject)mat)->type_name);CHKERRQ(ierr);
201482094794SBarry Smith     ierr = MatMPIBAIJSetPreallocation(M,bs,0,dlens,0,olens);CHKERRQ(ierr);
20158f46ffcaSHong Zhang     ierr = MatMPISBAIJSetPreallocation(M,bs,0,dlens,0,olens);CHKERRQ(ierr);
2016eb9baa12SBarry Smith     ierr = PetscFree2(dlens,olens);CHKERRQ(ierr);
201782094794SBarry Smith   } else {
201882094794SBarry Smith     PetscInt ml,nl;
201982094794SBarry Smith 
202082094794SBarry Smith     M    = *newmat;
202182094794SBarry Smith     ierr = MatGetLocalSize(M,&ml,&nl);CHKERRQ(ierr);
2022e32f2f54SBarry Smith     if (ml != m) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Previous matrix must be same size/layout as request");
202382094794SBarry Smith     ierr = MatZeroEntries(M);CHKERRQ(ierr);
202482094794SBarry Smith     /*
202582094794SBarry Smith          The next two lines are needed so we may call MatSetValues_MPIAIJ() below directly,
202682094794SBarry Smith        rather than the slower MatSetValues().
202782094794SBarry Smith     */
202882094794SBarry Smith     M->was_assembled = PETSC_TRUE;
202982094794SBarry Smith     M->assembled     = PETSC_FALSE;
203082094794SBarry Smith   }
203182094794SBarry Smith   ierr = MatSetOption(M,MAT_ROW_ORIENTED,PETSC_FALSE);CHKERRQ(ierr);
203282094794SBarry Smith   ierr = MatGetOwnershipRange(M,&rstart,&rend);CHKERRQ(ierr);
203382094794SBarry Smith   aij  = (Mat_SeqBAIJ*)(Mreuse)->data;
203482094794SBarry Smith   ii   = aij->i;
203582094794SBarry Smith   jj   = aij->j;
203682094794SBarry Smith   aa   = aij->a;
203782094794SBarry Smith   for (i=0; i<m; i++) {
203882094794SBarry Smith     row   = rstart/bs + i;
203982094794SBarry Smith     nz    = ii[i+1] - ii[i];
204082094794SBarry Smith     cwork = jj;     jj += nz;
204175f6568bSJed Brown     vwork = aa;     aa += nz*bs*bs;
204282094794SBarry Smith     ierr  = MatSetValuesBlocked_MPIBAIJ(M,1,&row,nz,cwork,vwork,INSERT_VALUES);CHKERRQ(ierr);
204382094794SBarry Smith   }
204482094794SBarry Smith 
204582094794SBarry Smith   ierr    = MatAssemblyBegin(M,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
204682094794SBarry Smith   ierr    = MatAssemblyEnd(M,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
204782094794SBarry Smith   *newmat = M;
204882094794SBarry Smith 
204982094794SBarry Smith   /* save submatrix used in processor for next request */
205082094794SBarry Smith   if (call ==  MAT_INITIAL_MATRIX) {
205182094794SBarry Smith     ierr = PetscObjectCompose((PetscObject)M,"SubMatrix",(PetscObject)Mreuse);CHKERRQ(ierr);
205282094794SBarry Smith     ierr = PetscObjectDereference((PetscObject)Mreuse);CHKERRQ(ierr);
205382094794SBarry Smith   }
205482094794SBarry Smith   PetscFunctionReturn(0);
205582094794SBarry Smith }
205682094794SBarry Smith 
205782094794SBarry Smith PetscErrorCode MatPermute_MPIBAIJ(Mat A,IS rowp,IS colp,Mat *B)
205882094794SBarry Smith {
205982094794SBarry Smith   MPI_Comm       comm,pcomm;
2060a0a83eb5SRémi Lacroix   PetscInt       clocal_size,nrows;
206182094794SBarry Smith   const PetscInt *rows;
2062dbf0e21dSBarry Smith   PetscMPIInt    size;
2063a0a83eb5SRémi Lacroix   IS             crowp,lcolp;
206482094794SBarry Smith   PetscErrorCode ierr;
206582094794SBarry Smith 
206682094794SBarry Smith   PetscFunctionBegin;
206782094794SBarry Smith   ierr = PetscObjectGetComm((PetscObject)A,&comm);CHKERRQ(ierr);
206882094794SBarry Smith   /* make a collective version of 'rowp' */
206982094794SBarry Smith   ierr = PetscObjectGetComm((PetscObject)rowp,&pcomm);CHKERRQ(ierr);
207082094794SBarry Smith   if (pcomm==comm) {
207182094794SBarry Smith     crowp = rowp;
207282094794SBarry Smith   } else {
207382094794SBarry Smith     ierr = ISGetSize(rowp,&nrows);CHKERRQ(ierr);
207482094794SBarry Smith     ierr = ISGetIndices(rowp,&rows);CHKERRQ(ierr);
207570b3c8c7SBarry Smith     ierr = ISCreateGeneral(comm,nrows,rows,PETSC_COPY_VALUES,&crowp);CHKERRQ(ierr);
207682094794SBarry Smith     ierr = ISRestoreIndices(rowp,&rows);CHKERRQ(ierr);
207782094794SBarry Smith   }
2078a0a83eb5SRémi Lacroix   ierr = ISSetPermutation(crowp);CHKERRQ(ierr);
2079a0a83eb5SRémi Lacroix   /* make a local version of 'colp' */
208082094794SBarry Smith   ierr = PetscObjectGetComm((PetscObject)colp,&pcomm);CHKERRQ(ierr);
2081dbf0e21dSBarry Smith   ierr = MPI_Comm_size(pcomm,&size);CHKERRQ(ierr);
2082dbf0e21dSBarry Smith   if (size==1) {
208382094794SBarry Smith     lcolp = colp;
208482094794SBarry Smith   } else {
208575f6568bSJed Brown     ierr = ISAllGather(colp,&lcolp);CHKERRQ(ierr);
208682094794SBarry Smith   }
2087dbf0e21dSBarry Smith   ierr = ISSetPermutation(lcolp);CHKERRQ(ierr);
208875f6568bSJed Brown   /* now we just get the submatrix */
20897afc1a8bSJed Brown   ierr = MatGetLocalSize(A,NULL,&clocal_size);CHKERRQ(ierr);
20907dae84e0SHong Zhang   ierr = MatCreateSubMatrix_MPIBAIJ_Private(A,crowp,lcolp,clocal_size,MAT_INITIAL_MATRIX,B);CHKERRQ(ierr);
2091a0a83eb5SRémi Lacroix   /* clean up */
2092a0a83eb5SRémi Lacroix   if (pcomm!=comm) {
2093a0a83eb5SRémi Lacroix     ierr = ISDestroy(&crowp);CHKERRQ(ierr);
2094a0a83eb5SRémi Lacroix   }
2095dbf0e21dSBarry Smith   if (size>1) {
20966bf464f9SBarry Smith     ierr = ISDestroy(&lcolp);CHKERRQ(ierr);
209782094794SBarry Smith   }
209882094794SBarry Smith   PetscFunctionReturn(0);
209982094794SBarry Smith }
210082094794SBarry Smith 
21017087cfbeSBarry Smith PetscErrorCode  MatGetGhosts_MPIBAIJ(Mat mat,PetscInt *nghosts,const PetscInt *ghosts[])
21028c7482ecSBarry Smith {
21038c7482ecSBarry Smith   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*) mat->data;
21048c7482ecSBarry Smith   Mat_SeqBAIJ *B    = (Mat_SeqBAIJ*)baij->B->data;
21058c7482ecSBarry Smith 
21068c7482ecSBarry Smith   PetscFunctionBegin;
210726fbe8dcSKarl Rupp   if (nghosts) *nghosts = B->nbs;
210826fbe8dcSKarl Rupp   if (ghosts) *ghosts = baij->garray;
21098c7482ecSBarry Smith   PetscFunctionReturn(0);
21108c7482ecSBarry Smith }
21118c7482ecSBarry Smith 
2112d1adec66SJed Brown PetscErrorCode MatGetSeqNonzeroStructure_MPIBAIJ(Mat A,Mat *newmat)
2113f6d58c54SBarry Smith {
2114f6d58c54SBarry Smith   Mat            B;
2115f6d58c54SBarry Smith   Mat_MPIBAIJ    *a  = (Mat_MPIBAIJ*)A->data;
2116f6d58c54SBarry Smith   Mat_SeqBAIJ    *ad = (Mat_SeqBAIJ*)a->A->data,*bd = (Mat_SeqBAIJ*)a->B->data;
2117f6d58c54SBarry Smith   Mat_SeqAIJ     *b;
2118f6d58c54SBarry Smith   PetscErrorCode ierr;
2119f6d58c54SBarry Smith   PetscMPIInt    size,rank,*recvcounts = 0,*displs = 0;
2120f6d58c54SBarry Smith   PetscInt       sendcount,i,*rstarts = A->rmap->range,n,cnt,j,bs = A->rmap->bs;
2121f6d58c54SBarry Smith   PetscInt       m,*garray = a->garray,*lens,*jsendbuf,*a_jsendbuf,*b_jsendbuf;
2122f6d58c54SBarry Smith 
2123f6d58c54SBarry Smith   PetscFunctionBegin;
2124ce94432eSBarry Smith   ierr = MPI_Comm_size(PetscObjectComm((PetscObject)A),&size);CHKERRQ(ierr);
2125ce94432eSBarry Smith   ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)A),&rank);CHKERRQ(ierr);
2126f6d58c54SBarry Smith 
2127f6d58c54SBarry Smith   /* ----------------------------------------------------------------
2128f6d58c54SBarry Smith      Tell every processor the number of nonzeros per row
2129f6d58c54SBarry Smith   */
2130854ce69bSBarry Smith   ierr = PetscMalloc1(A->rmap->N/bs,&lens);CHKERRQ(ierr);
2131f6d58c54SBarry Smith   for (i=A->rmap->rstart/bs; i<A->rmap->rend/bs; i++) {
2132f6d58c54SBarry Smith     lens[i] = ad->i[i-A->rmap->rstart/bs+1] - ad->i[i-A->rmap->rstart/bs] + bd->i[i-A->rmap->rstart/bs+1] - bd->i[i-A->rmap->rstart/bs];
2133f6d58c54SBarry Smith   }
2134785e854fSJed Brown   ierr      = PetscMalloc1(2*size,&recvcounts);CHKERRQ(ierr);
2135f6d58c54SBarry Smith   displs    = recvcounts + size;
2136f6d58c54SBarry Smith   for (i=0; i<size; i++) {
2137f6d58c54SBarry Smith     recvcounts[i] = A->rmap->range[i+1]/bs - A->rmap->range[i]/bs;
2138f6d58c54SBarry Smith     displs[i]     = A->rmap->range[i]/bs;
2139f6d58c54SBarry Smith   }
2140f6d58c54SBarry Smith #if defined(PETSC_HAVE_MPI_IN_PLACE)
2141ce94432eSBarry Smith   ierr = MPI_Allgatherv(MPI_IN_PLACE,0,MPI_DATATYPE_NULL,lens,recvcounts,displs,MPIU_INT,PetscObjectComm((PetscObject)A));CHKERRQ(ierr);
2142f6d58c54SBarry Smith #else
21433d3eaba7SBarry Smith   sendcount = A->rmap->rend/bs - A->rmap->rstart/bs;
2144ce94432eSBarry Smith   ierr = MPI_Allgatherv(lens+A->rmap->rstart/bs,sendcount,MPIU_INT,lens,recvcounts,displs,MPIU_INT,PetscObjectComm((PetscObject)A));CHKERRQ(ierr);
2145f6d58c54SBarry Smith #endif
2146f6d58c54SBarry Smith   /* ---------------------------------------------------------------
2147f6d58c54SBarry Smith      Create the sequential matrix of the same type as the local block diagonal
2148f6d58c54SBarry Smith   */
2149f6d58c54SBarry Smith   ierr = MatCreate(PETSC_COMM_SELF,&B);CHKERRQ(ierr);
2150f6d58c54SBarry Smith   ierr = MatSetSizes(B,A->rmap->N/bs,A->cmap->N/bs,PETSC_DETERMINE,PETSC_DETERMINE);CHKERRQ(ierr);
2151f6d58c54SBarry Smith   ierr = MatSetType(B,MATSEQAIJ);CHKERRQ(ierr);
2152f6d58c54SBarry Smith   ierr = MatSeqAIJSetPreallocation(B,0,lens);CHKERRQ(ierr);
2153f6d58c54SBarry Smith   b    = (Mat_SeqAIJ*)B->data;
2154f6d58c54SBarry Smith 
2155f6d58c54SBarry Smith   /*--------------------------------------------------------------------
2156f6d58c54SBarry Smith     Copy my part of matrix column indices over
2157f6d58c54SBarry Smith   */
2158f6d58c54SBarry Smith   sendcount  = ad->nz + bd->nz;
2159f6d58c54SBarry Smith   jsendbuf   = b->j + b->i[rstarts[rank]/bs];
2160f6d58c54SBarry Smith   a_jsendbuf = ad->j;
2161f6d58c54SBarry Smith   b_jsendbuf = bd->j;
2162f6d58c54SBarry Smith   n          = A->rmap->rend/bs - A->rmap->rstart/bs;
2163f6d58c54SBarry Smith   cnt        = 0;
2164f6d58c54SBarry Smith   for (i=0; i<n; i++) {
2165f6d58c54SBarry Smith 
2166f6d58c54SBarry Smith     /* put in lower diagonal portion */
2167f6d58c54SBarry Smith     m = bd->i[i+1] - bd->i[i];
2168f6d58c54SBarry Smith     while (m > 0) {
2169f6d58c54SBarry Smith       /* is it above diagonal (in bd (compressed) numbering) */
2170f6d58c54SBarry Smith       if (garray[*b_jsendbuf] > A->rmap->rstart/bs + i) break;
2171f6d58c54SBarry Smith       jsendbuf[cnt++] = garray[*b_jsendbuf++];
2172f6d58c54SBarry Smith       m--;
2173f6d58c54SBarry Smith     }
2174f6d58c54SBarry Smith 
2175f6d58c54SBarry Smith     /* put in diagonal portion */
2176f6d58c54SBarry Smith     for (j=ad->i[i]; j<ad->i[i+1]; j++) {
2177f6d58c54SBarry Smith       jsendbuf[cnt++] = A->rmap->rstart/bs + *a_jsendbuf++;
2178f6d58c54SBarry Smith     }
2179f6d58c54SBarry Smith 
2180f6d58c54SBarry Smith     /* put in upper diagonal portion */
2181f6d58c54SBarry Smith     while (m-- > 0) {
2182f6d58c54SBarry Smith       jsendbuf[cnt++] = garray[*b_jsendbuf++];
2183f6d58c54SBarry Smith     }
2184f6d58c54SBarry Smith   }
2185e32f2f54SBarry Smith   if (cnt != sendcount) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Corrupted PETSc matrix: nz given %D actual nz %D",sendcount,cnt);
2186f6d58c54SBarry Smith 
2187f6d58c54SBarry Smith   /*--------------------------------------------------------------------
2188f6d58c54SBarry Smith     Gather all column indices to all processors
2189f6d58c54SBarry Smith   */
2190f6d58c54SBarry Smith   for (i=0; i<size; i++) {
2191f6d58c54SBarry Smith     recvcounts[i] = 0;
2192f6d58c54SBarry Smith     for (j=A->rmap->range[i]/bs; j<A->rmap->range[i+1]/bs; j++) {
2193f6d58c54SBarry Smith       recvcounts[i] += lens[j];
2194f6d58c54SBarry Smith     }
2195f6d58c54SBarry Smith   }
2196f6d58c54SBarry Smith   displs[0] = 0;
2197f6d58c54SBarry Smith   for (i=1; i<size; i++) {
2198f6d58c54SBarry Smith     displs[i] = displs[i-1] + recvcounts[i-1];
2199f6d58c54SBarry Smith   }
2200f6d58c54SBarry Smith #if defined(PETSC_HAVE_MPI_IN_PLACE)
2201ce94432eSBarry Smith   ierr = MPI_Allgatherv(MPI_IN_PLACE,0,MPI_DATATYPE_NULL,b->j,recvcounts,displs,MPIU_INT,PetscObjectComm((PetscObject)A));CHKERRQ(ierr);
2202f6d58c54SBarry Smith #else
2203ce94432eSBarry Smith   ierr = MPI_Allgatherv(jsendbuf,sendcount,MPIU_INT,b->j,recvcounts,displs,MPIU_INT,PetscObjectComm((PetscObject)A));CHKERRQ(ierr);
2204f6d58c54SBarry Smith #endif
2205f6d58c54SBarry Smith   /*--------------------------------------------------------------------
2206f6d58c54SBarry Smith     Assemble the matrix into useable form (note numerical values not yet set)
2207f6d58c54SBarry Smith   */
2208f6d58c54SBarry Smith   /* set the b->ilen (length of each row) values */
2209580bdb30SBarry Smith   ierr = PetscArraycpy(b->ilen,lens,A->rmap->N/bs);CHKERRQ(ierr);
2210f6d58c54SBarry Smith   /* set the b->i indices */
2211f6d58c54SBarry Smith   b->i[0] = 0;
2212f6d58c54SBarry Smith   for (i=1; i<=A->rmap->N/bs; i++) {
2213f6d58c54SBarry Smith     b->i[i] = b->i[i-1] + lens[i-1];
2214f6d58c54SBarry Smith   }
2215f6d58c54SBarry Smith   ierr = PetscFree(lens);CHKERRQ(ierr);
2216f6d58c54SBarry Smith   ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
2217f6d58c54SBarry Smith   ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
2218f6d58c54SBarry Smith   ierr = PetscFree(recvcounts);CHKERRQ(ierr);
2219f6d58c54SBarry Smith 
2220f6d58c54SBarry Smith   if (A->symmetric) {
2221f6d58c54SBarry Smith     ierr = MatSetOption(B,MAT_SYMMETRIC,PETSC_TRUE);CHKERRQ(ierr);
2222f6d58c54SBarry Smith   } else if (A->hermitian) {
2223f6d58c54SBarry Smith     ierr = MatSetOption(B,MAT_HERMITIAN,PETSC_TRUE);CHKERRQ(ierr);
2224f6d58c54SBarry Smith   } else if (A->structurally_symmetric) {
2225f6d58c54SBarry Smith     ierr = MatSetOption(B,MAT_STRUCTURALLY_SYMMETRIC,PETSC_TRUE);CHKERRQ(ierr);
2226f6d58c54SBarry Smith   }
2227f6d58c54SBarry Smith   *newmat = B;
2228f6d58c54SBarry Smith   PetscFunctionReturn(0);
2229f6d58c54SBarry Smith }
2230f6d58c54SBarry Smith 
2231b1a666ecSBarry Smith PetscErrorCode MatSOR_MPIBAIJ(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx)
2232b1a666ecSBarry Smith {
2233b1a666ecSBarry Smith   Mat_MPIBAIJ    *mat = (Mat_MPIBAIJ*)matin->data;
2234b1a666ecSBarry Smith   PetscErrorCode ierr;
2235b1a666ecSBarry Smith   Vec            bb1 = 0;
2236b1a666ecSBarry Smith 
2237b1a666ecSBarry Smith   PetscFunctionBegin;
2238b1a666ecSBarry Smith   if (flag == SOR_APPLY_UPPER) {
2239b1a666ecSBarry Smith     ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr);
2240b1a666ecSBarry Smith     PetscFunctionReturn(0);
2241b1a666ecSBarry Smith   }
2242b1a666ecSBarry Smith 
22434e980039SJed Brown   if (its > 1 || ~flag & SOR_ZERO_INITIAL_GUESS) {
22444e980039SJed Brown     ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr);
22454e980039SJed Brown   }
22464e980039SJed Brown 
2247b1a666ecSBarry Smith   if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP) {
2248b1a666ecSBarry Smith     if (flag & SOR_ZERO_INITIAL_GUESS) {
2249b1a666ecSBarry Smith       ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr);
2250b1a666ecSBarry Smith       its--;
2251b1a666ecSBarry Smith     }
2252b1a666ecSBarry Smith 
2253b1a666ecSBarry Smith     while (its--) {
2254b1a666ecSBarry Smith       ierr = VecScatterBegin(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
2255b1a666ecSBarry Smith       ierr = VecScatterEnd(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
2256b1a666ecSBarry Smith 
2257b1a666ecSBarry Smith       /* update rhs: bb1 = bb - B*x */
2258b1a666ecSBarry Smith       ierr = VecScale(mat->lvec,-1.0);CHKERRQ(ierr);
2259b1a666ecSBarry Smith       ierr = (*mat->B->ops->multadd)(mat->B,mat->lvec,bb,bb1);CHKERRQ(ierr);
2260b1a666ecSBarry Smith 
2261b1a666ecSBarry Smith       /* local sweep */
2262b1a666ecSBarry Smith       ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,1,xx);CHKERRQ(ierr);
2263b1a666ecSBarry Smith     }
2264b1a666ecSBarry Smith   } else if (flag & SOR_LOCAL_FORWARD_SWEEP) {
2265b1a666ecSBarry Smith     if (flag & SOR_ZERO_INITIAL_GUESS) {
2266b1a666ecSBarry Smith       ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr);
2267b1a666ecSBarry Smith       its--;
2268b1a666ecSBarry Smith     }
2269b1a666ecSBarry Smith     while (its--) {
2270b1a666ecSBarry Smith       ierr = VecScatterBegin(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
2271b1a666ecSBarry Smith       ierr = VecScatterEnd(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
2272b1a666ecSBarry Smith 
2273b1a666ecSBarry Smith       /* update rhs: bb1 = bb - B*x */
2274b1a666ecSBarry Smith       ierr = VecScale(mat->lvec,-1.0);CHKERRQ(ierr);
2275b1a666ecSBarry Smith       ierr = (*mat->B->ops->multadd)(mat->B,mat->lvec,bb,bb1);CHKERRQ(ierr);
2276b1a666ecSBarry Smith 
2277b1a666ecSBarry Smith       /* local sweep */
2278b1a666ecSBarry Smith       ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_FORWARD_SWEEP,fshift,lits,1,xx);CHKERRQ(ierr);
2279b1a666ecSBarry Smith     }
2280b1a666ecSBarry Smith   } else if (flag & SOR_LOCAL_BACKWARD_SWEEP) {
2281b1a666ecSBarry Smith     if (flag & SOR_ZERO_INITIAL_GUESS) {
2282b1a666ecSBarry Smith       ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr);
2283b1a666ecSBarry Smith       its--;
2284b1a666ecSBarry Smith     }
2285b1a666ecSBarry Smith     while (its--) {
2286b1a666ecSBarry Smith       ierr = VecScatterBegin(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
2287b1a666ecSBarry Smith       ierr = VecScatterEnd(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
2288b1a666ecSBarry Smith 
2289b1a666ecSBarry Smith       /* update rhs: bb1 = bb - B*x */
2290b1a666ecSBarry Smith       ierr = VecScale(mat->lvec,-1.0);CHKERRQ(ierr);
2291b1a666ecSBarry Smith       ierr = (*mat->B->ops->multadd)(mat->B,mat->lvec,bb,bb1);CHKERRQ(ierr);
2292b1a666ecSBarry Smith 
2293b1a666ecSBarry Smith       /* local sweep */
2294b1a666ecSBarry Smith       ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_BACKWARD_SWEEP,fshift,lits,1,xx);CHKERRQ(ierr);
2295b1a666ecSBarry Smith     }
2296ce94432eSBarry Smith   } else SETERRQ(PetscObjectComm((PetscObject)matin),PETSC_ERR_SUP,"Parallel version of SOR requested not supported");
2297b1a666ecSBarry Smith 
22986bf464f9SBarry Smith   ierr = VecDestroy(&bb1);CHKERRQ(ierr);
2299b1a666ecSBarry Smith   PetscFunctionReturn(0);
2300b1a666ecSBarry Smith }
2301b1a666ecSBarry Smith 
230247f7623dSRémi Lacroix PetscErrorCode MatGetColumnNorms_MPIBAIJ(Mat A,NormType type,PetscReal *norms)
230347f7623dSRémi Lacroix {
230447f7623dSRémi Lacroix   PetscErrorCode ierr;
230547f7623dSRémi Lacroix   Mat_MPIBAIJ    *aij = (Mat_MPIBAIJ*)A->data;
230647f7623dSRémi Lacroix   PetscInt       N,i,*garray = aij->garray;
230747f7623dSRémi Lacroix   PetscInt       ib,jb,bs = A->rmap->bs;
230847f7623dSRémi Lacroix   Mat_SeqBAIJ    *a_aij = (Mat_SeqBAIJ*) aij->A->data;
230947f7623dSRémi Lacroix   MatScalar      *a_val = a_aij->a;
231047f7623dSRémi Lacroix   Mat_SeqBAIJ    *b_aij = (Mat_SeqBAIJ*) aij->B->data;
231147f7623dSRémi Lacroix   MatScalar      *b_val = b_aij->a;
231247f7623dSRémi Lacroix   PetscReal      *work;
231347f7623dSRémi Lacroix 
231447f7623dSRémi Lacroix   PetscFunctionBegin;
231547f7623dSRémi Lacroix   ierr = MatGetSize(A,NULL,&N);CHKERRQ(ierr);
23161795a4d1SJed Brown   ierr = PetscCalloc1(N,&work);CHKERRQ(ierr);
231747f7623dSRémi Lacroix   if (type == NORM_2) {
231847f7623dSRémi Lacroix     for (i=a_aij->i[0]; i<a_aij->i[aij->A->rmap->n/bs]; i++) {
231947f7623dSRémi Lacroix       for (jb=0; jb<bs; jb++) {
232047f7623dSRémi Lacroix         for (ib=0; ib<bs; ib++) {
232147f7623dSRémi Lacroix           work[A->cmap->rstart + a_aij->j[i] * bs + jb] += PetscAbsScalar(*a_val * *a_val);
232247f7623dSRémi Lacroix           a_val++;
232347f7623dSRémi Lacroix         }
232447f7623dSRémi Lacroix       }
232547f7623dSRémi Lacroix     }
232647f7623dSRémi Lacroix     for (i=b_aij->i[0]; i<b_aij->i[aij->B->rmap->n/bs]; i++) {
232747f7623dSRémi Lacroix       for (jb=0; jb<bs; jb++) {
232847f7623dSRémi Lacroix         for (ib=0; ib<bs; ib++) {
232947f7623dSRémi Lacroix           work[garray[b_aij->j[i]] * bs + jb] += PetscAbsScalar(*b_val * *b_val);
233047f7623dSRémi Lacroix           b_val++;
233147f7623dSRémi Lacroix         }
233247f7623dSRémi Lacroix       }
233347f7623dSRémi Lacroix     }
233447f7623dSRémi Lacroix   } else if (type == NORM_1) {
233547f7623dSRémi Lacroix     for (i=a_aij->i[0]; i<a_aij->i[aij->A->rmap->n/bs]; i++) {
233647f7623dSRémi Lacroix       for (jb=0; jb<bs; jb++) {
233747f7623dSRémi Lacroix         for (ib=0; ib<bs; ib++) {
233847f7623dSRémi Lacroix           work[A->cmap->rstart + a_aij->j[i] * bs + jb] += PetscAbsScalar(*a_val);
233947f7623dSRémi Lacroix           a_val++;
234047f7623dSRémi Lacroix         }
234147f7623dSRémi Lacroix       }
234247f7623dSRémi Lacroix     }
234347f7623dSRémi Lacroix     for (i=b_aij->i[0]; i<b_aij->i[aij->B->rmap->n/bs]; i++) {
234447f7623dSRémi Lacroix       for (jb=0; jb<bs; jb++) {
234547f7623dSRémi Lacroix        for (ib=0; ib<bs; ib++) {
234647f7623dSRémi Lacroix           work[garray[b_aij->j[i]] * bs + jb] += PetscAbsScalar(*b_val);
234747f7623dSRémi Lacroix           b_val++;
234847f7623dSRémi Lacroix         }
234947f7623dSRémi Lacroix       }
235047f7623dSRémi Lacroix     }
235147f7623dSRémi Lacroix   } else if (type == NORM_INFINITY) {
235247f7623dSRémi Lacroix     for (i=a_aij->i[0]; i<a_aij->i[aij->A->rmap->n/bs]; i++) {
235347f7623dSRémi Lacroix       for (jb=0; jb<bs; jb++) {
235447f7623dSRémi Lacroix         for (ib=0; ib<bs; ib++) {
235547f7623dSRémi Lacroix           int col = A->cmap->rstart + a_aij->j[i] * bs + jb;
235647f7623dSRémi Lacroix           work[col] = PetscMax(PetscAbsScalar(*a_val), work[col]);
235747f7623dSRémi Lacroix           a_val++;
235847f7623dSRémi Lacroix         }
235947f7623dSRémi Lacroix       }
236047f7623dSRémi Lacroix     }
236147f7623dSRémi Lacroix     for (i=b_aij->i[0]; i<b_aij->i[aij->B->rmap->n/bs]; i++) {
236247f7623dSRémi Lacroix       for (jb=0; jb<bs; jb++) {
236347f7623dSRémi Lacroix         for (ib=0; ib<bs; ib++) {
236447f7623dSRémi Lacroix           int col = garray[b_aij->j[i]] * bs + jb;
236547f7623dSRémi Lacroix           work[col] = PetscMax(PetscAbsScalar(*b_val), work[col]);
236647f7623dSRémi Lacroix           b_val++;
236747f7623dSRémi Lacroix         }
236847f7623dSRémi Lacroix       }
236947f7623dSRémi Lacroix     }
237047f7623dSRémi Lacroix   } else SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ARG_WRONG,"Unknown NormType");
237147f7623dSRémi Lacroix   if (type == NORM_INFINITY) {
2372b2566f29SBarry Smith     ierr = MPIU_Allreduce(work,norms,N,MPIU_REAL,MPIU_MAX,PetscObjectComm((PetscObject)A));CHKERRQ(ierr);
237347f7623dSRémi Lacroix   } else {
2374b2566f29SBarry Smith     ierr = MPIU_Allreduce(work,norms,N,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)A));CHKERRQ(ierr);
237547f7623dSRémi Lacroix   }
237647f7623dSRémi Lacroix   ierr = PetscFree(work);CHKERRQ(ierr);
237747f7623dSRémi Lacroix   if (type == NORM_2) {
237847f7623dSRémi Lacroix     for (i=0; i<N; i++) norms[i] = PetscSqrtReal(norms[i]);
237947f7623dSRémi Lacroix   }
238047f7623dSRémi Lacroix   PetscFunctionReturn(0);
238147f7623dSRémi Lacroix }
238247f7623dSRémi Lacroix 
2383713ccfa9SJed Brown PetscErrorCode MatInvertBlockDiagonal_MPIBAIJ(Mat A,const PetscScalar **values)
2384bbead8a2SBarry Smith {
2385bbead8a2SBarry Smith   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*) A->data;
2386bbead8a2SBarry Smith   PetscErrorCode ierr;
2387bbead8a2SBarry Smith 
2388bbead8a2SBarry Smith   PetscFunctionBegin;
2389bbead8a2SBarry Smith   ierr = MatInvertBlockDiagonal(a->A,values);CHKERRQ(ierr);
23907b6c816cSBarry Smith   A->factorerrortype             = a->A->factorerrortype;
23917b6c816cSBarry Smith   A->factorerror_zeropivot_value = a->A->factorerror_zeropivot_value;
23927b6c816cSBarry Smith   A->factorerror_zeropivot_row   = a->A->factorerror_zeropivot_row;
2393bbead8a2SBarry Smith   PetscFunctionReturn(0);
2394bbead8a2SBarry Smith }
2395bbead8a2SBarry Smith 
23967d68702bSBarry Smith PetscErrorCode MatShift_MPIBAIJ(Mat Y,PetscScalar a)
23977d68702bSBarry Smith {
23987d68702bSBarry Smith   PetscErrorCode ierr;
23997d68702bSBarry Smith   Mat_MPIBAIJ    *maij = (Mat_MPIBAIJ*)Y->data;
24006f33a894SBarry Smith   Mat_SeqBAIJ    *aij = (Mat_SeqBAIJ*)maij->A->data;
24017d68702bSBarry Smith 
24027d68702bSBarry Smith   PetscFunctionBegin;
24036f33a894SBarry Smith   if (!Y->preallocated) {
24047d68702bSBarry Smith     ierr = MatMPIBAIJSetPreallocation(Y,Y->rmap->bs,1,NULL,0,NULL);CHKERRQ(ierr);
24056f33a894SBarry Smith   } else if (!aij->nz) {
2406b83222d8SBarry Smith     PetscInt nonew = aij->nonew;
24076f33a894SBarry Smith     ierr = MatSeqBAIJSetPreallocation(maij->A,Y->rmap->bs,1,NULL);CHKERRQ(ierr);
2408b83222d8SBarry Smith     aij->nonew = nonew;
24097d68702bSBarry Smith   }
24107d68702bSBarry Smith   ierr = MatShift_Basic(Y,a);CHKERRQ(ierr);
24117d68702bSBarry Smith   PetscFunctionReturn(0);
24127d68702bSBarry Smith }
24138c7482ecSBarry Smith 
24143b49f96aSBarry Smith PetscErrorCode MatMissingDiagonal_MPIBAIJ(Mat A,PetscBool  *missing,PetscInt *d)
24153b49f96aSBarry Smith {
24163b49f96aSBarry Smith   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)A->data;
24173b49f96aSBarry Smith   PetscErrorCode ierr;
24183b49f96aSBarry Smith 
24193b49f96aSBarry Smith   PetscFunctionBegin;
24203b49f96aSBarry Smith   if (A->rmap->n != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only works for square matrices");
24213b49f96aSBarry Smith   ierr = MatMissingDiagonal(a->A,missing,d);CHKERRQ(ierr);
24223b49f96aSBarry Smith   if (d) {
24233b49f96aSBarry Smith     PetscInt rstart;
24243b49f96aSBarry Smith     ierr = MatGetOwnershipRange(A,&rstart,NULL);CHKERRQ(ierr);
24253b49f96aSBarry Smith     *d += rstart/A->rmap->bs;
24263b49f96aSBarry Smith 
24273b49f96aSBarry Smith   }
24283b49f96aSBarry Smith   PetscFunctionReturn(0);
24293b49f96aSBarry Smith }
24303b49f96aSBarry Smith 
2431a5b7ff6bSBarry Smith PetscErrorCode  MatGetDiagonalBlock_MPIBAIJ(Mat A,Mat *a)
2432a5b7ff6bSBarry Smith {
2433a5b7ff6bSBarry Smith   PetscFunctionBegin;
2434a5b7ff6bSBarry Smith   *a = ((Mat_MPIBAIJ*)A->data)->A;
2435a5b7ff6bSBarry Smith   PetscFunctionReturn(0);
2436a5b7ff6bSBarry Smith }
2437a5b7ff6bSBarry Smith 
243879bdfe76SSatish Balay /* -------------------------------------------------------------------*/
24393964eb88SJed Brown static struct _MatOps MatOps_Values = {MatSetValues_MPIBAIJ,
2440cc2dc46cSBarry Smith                                        MatGetRow_MPIBAIJ,
2441cc2dc46cSBarry Smith                                        MatRestoreRow_MPIBAIJ,
2442cc2dc46cSBarry Smith                                        MatMult_MPIBAIJ,
244397304618SKris Buschelman                                 /* 4*/ MatMultAdd_MPIBAIJ,
24447c922b88SBarry Smith                                        MatMultTranspose_MPIBAIJ,
24457c922b88SBarry Smith                                        MatMultTransposeAdd_MPIBAIJ,
2446cc2dc46cSBarry Smith                                        0,
2447cc2dc46cSBarry Smith                                        0,
2448cc2dc46cSBarry Smith                                        0,
244997304618SKris Buschelman                                 /*10*/ 0,
2450cc2dc46cSBarry Smith                                        0,
2451cc2dc46cSBarry Smith                                        0,
2452b1a666ecSBarry Smith                                        MatSOR_MPIBAIJ,
2453cc2dc46cSBarry Smith                                        MatTranspose_MPIBAIJ,
245497304618SKris Buschelman                                 /*15*/ MatGetInfo_MPIBAIJ,
24557fc3c18eSBarry Smith                                        MatEqual_MPIBAIJ,
2456cc2dc46cSBarry Smith                                        MatGetDiagonal_MPIBAIJ,
2457cc2dc46cSBarry Smith                                        MatDiagonalScale_MPIBAIJ,
2458cc2dc46cSBarry Smith                                        MatNorm_MPIBAIJ,
245997304618SKris Buschelman                                 /*20*/ MatAssemblyBegin_MPIBAIJ,
2460cc2dc46cSBarry Smith                                        MatAssemblyEnd_MPIBAIJ,
2461cc2dc46cSBarry Smith                                        MatSetOption_MPIBAIJ,
2462cc2dc46cSBarry Smith                                        MatZeroEntries_MPIBAIJ,
2463d519adbfSMatthew Knepley                                 /*24*/ MatZeroRows_MPIBAIJ,
2464cc2dc46cSBarry Smith                                        0,
2465cc2dc46cSBarry Smith                                        0,
2466cc2dc46cSBarry Smith                                        0,
2467cc2dc46cSBarry Smith                                        0,
24684994cf47SJed Brown                                 /*29*/ MatSetUp_MPIBAIJ,
2469273d9f13SBarry Smith                                        0,
2470cc2dc46cSBarry Smith                                        0,
2471a5b7ff6bSBarry Smith                                        MatGetDiagonalBlock_MPIBAIJ,
2472cc2dc46cSBarry Smith                                        0,
2473d519adbfSMatthew Knepley                                 /*34*/ MatDuplicate_MPIBAIJ,
2474cc2dc46cSBarry Smith                                        0,
2475cc2dc46cSBarry Smith                                        0,
2476cc2dc46cSBarry Smith                                        0,
2477cc2dc46cSBarry Smith                                        0,
2478d519adbfSMatthew Knepley                                 /*39*/ MatAXPY_MPIBAIJ,
24797dae84e0SHong Zhang                                        MatCreateSubMatrices_MPIBAIJ,
2480cc2dc46cSBarry Smith                                        MatIncreaseOverlap_MPIBAIJ,
2481cc2dc46cSBarry Smith                                        MatGetValues_MPIBAIJ,
24823c896bc6SHong Zhang                                        MatCopy_MPIBAIJ,
2483d519adbfSMatthew Knepley                                 /*44*/ 0,
2484cc2dc46cSBarry Smith                                        MatScale_MPIBAIJ,
24857d68702bSBarry Smith                                        MatShift_MPIBAIJ,
2486cc2dc46cSBarry Smith                                        0,
24876f0a72daSMatthew G. Knepley                                        MatZeroRowsColumns_MPIBAIJ,
2488f73d5cc4SBarry Smith                                 /*49*/ 0,
2489cc2dc46cSBarry Smith                                        0,
2490cc2dc46cSBarry Smith                                        0,
2491cc2dc46cSBarry Smith                                        0,
2492cc2dc46cSBarry Smith                                        0,
249393dfae19SHong Zhang                                 /*54*/ MatFDColoringCreate_MPIXAIJ,
2494cc2dc46cSBarry Smith                                        0,
2495cc2dc46cSBarry Smith                                        MatSetUnfactored_MPIBAIJ,
249682094794SBarry Smith                                        MatPermute_MPIBAIJ,
2497cc2dc46cSBarry Smith                                        MatSetValuesBlocked_MPIBAIJ,
24987dae84e0SHong Zhang                                 /*59*/ MatCreateSubMatrix_MPIBAIJ,
2499f14a1c24SBarry Smith                                        MatDestroy_MPIBAIJ,
2500f14a1c24SBarry Smith                                        MatView_MPIBAIJ,
2501357abbc8SBarry Smith                                        0,
25027843d17aSBarry Smith                                        0,
2503d519adbfSMatthew Knepley                                 /*64*/ 0,
25047843d17aSBarry Smith                                        0,
25057843d17aSBarry Smith                                        0,
25067843d17aSBarry Smith                                        0,
25077843d17aSBarry Smith                                        0,
2508d519adbfSMatthew Knepley                                 /*69*/ MatGetRowMaxAbs_MPIBAIJ,
25097843d17aSBarry Smith                                        0,
251097304618SKris Buschelman                                        0,
251197304618SKris Buschelman                                        0,
251297304618SKris Buschelman                                        0,
2513d519adbfSMatthew Knepley                                 /*74*/ 0,
2514f6d58c54SBarry Smith                                        MatFDColoringApply_BAIJ,
251597304618SKris Buschelman                                        0,
251697304618SKris Buschelman                                        0,
251797304618SKris Buschelman                                        0,
2518d519adbfSMatthew Knepley                                 /*79*/ 0,
251997304618SKris Buschelman                                        0,
252097304618SKris Buschelman                                        0,
252197304618SKris Buschelman                                        0,
25225bba2384SShri Abhyankar                                        MatLoad_MPIBAIJ,
2523d519adbfSMatthew Knepley                                 /*84*/ 0,
2524865e5f61SKris Buschelman                                        0,
2525865e5f61SKris Buschelman                                        0,
2526865e5f61SKris Buschelman                                        0,
2527865e5f61SKris Buschelman                                        0,
2528d519adbfSMatthew Knepley                                 /*89*/ 0,
2529865e5f61SKris Buschelman                                        0,
2530865e5f61SKris Buschelman                                        0,
2531865e5f61SKris Buschelman                                        0,
2532865e5f61SKris Buschelman                                        0,
2533d519adbfSMatthew Knepley                                 /*94*/ 0,
2534865e5f61SKris Buschelman                                        0,
2535865e5f61SKris Buschelman                                        0,
253699cafbc1SBarry Smith                                        0,
253799cafbc1SBarry Smith                                        0,
2538d519adbfSMatthew Knepley                                 /*99*/ 0,
253999cafbc1SBarry Smith                                        0,
254099cafbc1SBarry Smith                                        0,
254199cafbc1SBarry Smith                                        0,
254299cafbc1SBarry Smith                                        0,
2543d519adbfSMatthew Knepley                                 /*104*/0,
254499cafbc1SBarry Smith                                        MatRealPart_MPIBAIJ,
25458c7482ecSBarry Smith                                        MatImaginaryPart_MPIBAIJ,
25468c7482ecSBarry Smith                                        0,
25478c7482ecSBarry Smith                                        0,
2548d519adbfSMatthew Knepley                                 /*109*/0,
25498c7482ecSBarry Smith                                        0,
25508c7482ecSBarry Smith                                        0,
25518c7482ecSBarry Smith                                        0,
25523b49f96aSBarry Smith                                        MatMissingDiagonal_MPIBAIJ,
2553d1adec66SJed Brown                                 /*114*/MatGetSeqNonzeroStructure_MPIBAIJ,
25548c7482ecSBarry Smith                                        0,
25554683f7a4SShri Abhyankar                                        MatGetGhosts_MPIBAIJ,
25564683f7a4SShri Abhyankar                                        0,
25574683f7a4SShri Abhyankar                                        0,
25584683f7a4SShri Abhyankar                                 /*119*/0,
25594683f7a4SShri Abhyankar                                        0,
25604683f7a4SShri Abhyankar                                        0,
2561bbead8a2SBarry Smith                                        0,
2562e8271787SHong Zhang                                        MatGetMultiProcBlock_MPIBAIJ,
2563bbead8a2SBarry Smith                                 /*124*/0,
256447f7623dSRémi Lacroix                                        MatGetColumnNorms_MPIBAIJ,
25653964eb88SJed Brown                                        MatInvertBlockDiagonal_MPIBAIJ,
25663964eb88SJed Brown                                        0,
25673964eb88SJed Brown                                        0,
25683964eb88SJed Brown                                /*129*/ 0,
25693964eb88SJed Brown                                        0,
25703964eb88SJed Brown                                        0,
25713964eb88SJed Brown                                        0,
25723964eb88SJed Brown                                        0,
25733964eb88SJed Brown                                /*134*/ 0,
25743964eb88SJed Brown                                        0,
25753964eb88SJed Brown                                        0,
25763964eb88SJed Brown                                        0,
25773964eb88SJed Brown                                        0,
257846533700Sstefano_zampini                                /*139*/ MatSetBlockSizes_Default,
2579f9426fe0SMark Adams                                        0,
25801919a2e2SJed Brown                                        0,
2581bdf6f3fcSHong Zhang                                        MatFDColoringSetUp_MPIXAIJ,
2582bdf6f3fcSHong Zhang                                        0,
2583bdf6f3fcSHong Zhang                                 /*144*/MatCreateMPIMatConcatenateSeqMat_MPIBAIJ
25848c7482ecSBarry Smith };
258579bdfe76SSatish Balay 
258679bdfe76SSatish Balay 
2587cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIBAIJ_MPISBAIJ(Mat,MatType,MatReuse,Mat*);
2588c9225affSStefano Zampini PETSC_INTERN PetscErrorCode MatConvert_XAIJ_IS(Mat,MatType,MatReuse,Mat*);
2589d94109b8SHong Zhang 
2590cf12db73SBarry Smith PetscErrorCode MatMPIBAIJSetPreallocationCSR_MPIBAIJ(Mat B,PetscInt bs,const PetscInt ii[],const PetscInt jj[],const PetscScalar V[])
2591aac34f13SBarry Smith {
2592b8d659d7SLisandro Dalcin   PetscInt       m,rstart,cstart,cend;
259337cd3c0dSBarry Smith   PetscInt       i,j,dlen,olen,nz,nz_max=0,*d_nnz=0,*o_nnz=0;
2594b8d659d7SLisandro Dalcin   const PetscInt *JJ    =0;
2595b8d659d7SLisandro Dalcin   PetscScalar    *values=0;
2596d47bf9aaSJed Brown   PetscBool      roworiented = ((Mat_MPIBAIJ*)B->data)->roworiented;
2597aac34f13SBarry Smith   PetscErrorCode ierr;
25983bd0feecSPierre Jolivet   PetscBool      nooffprocentries;
2599aac34f13SBarry Smith 
2600aac34f13SBarry Smith   PetscFunctionBegin;
260126283091SBarry Smith   ierr   = PetscLayoutSetBlockSize(B->rmap,bs);CHKERRQ(ierr);
260226283091SBarry Smith   ierr   = PetscLayoutSetBlockSize(B->cmap,bs);CHKERRQ(ierr);
260326283091SBarry Smith   ierr   = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr);
260426283091SBarry Smith   ierr   = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr);
2605e02043d6SBarry Smith   ierr   = PetscLayoutGetBlockSize(B->rmap,&bs);CHKERRQ(ierr);
2606d0f46423SBarry Smith   m      = B->rmap->n/bs;
2607d0f46423SBarry Smith   rstart = B->rmap->rstart/bs;
2608d0f46423SBarry Smith   cstart = B->cmap->rstart/bs;
2609d0f46423SBarry Smith   cend   = B->cmap->rend/bs;
2610b8d659d7SLisandro Dalcin 
2611e32f2f54SBarry Smith   if (ii[0]) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"ii[0] must be 0 but it is %D",ii[0]);
2612dcca6d9dSJed Brown   ierr = PetscMalloc2(m,&d_nnz,m,&o_nnz);CHKERRQ(ierr);
2613aac34f13SBarry Smith   for (i=0; i<m; i++) {
2614cf12db73SBarry Smith     nz = ii[i+1] - ii[i];
2615e32f2f54SBarry Smith     if (nz < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Local row %D has a negative number of columns %D",i,nz);
2616b8d659d7SLisandro Dalcin     nz_max = PetscMax(nz_max,nz);
261737cd3c0dSBarry Smith     dlen   = 0;
261837cd3c0dSBarry Smith     olen   = 0;
2619cf12db73SBarry Smith     JJ     = jj + ii[i];
2620b8d659d7SLisandro Dalcin     for (j=0; j<nz; j++) {
262137cd3c0dSBarry Smith       if (*JJ < cstart || *JJ >= cend) olen++;
262237cd3c0dSBarry Smith       else dlen++;
2623aac34f13SBarry Smith       JJ++;
2624aac34f13SBarry Smith     }
262537cd3c0dSBarry Smith     d_nnz[i] = dlen;
262637cd3c0dSBarry Smith     o_nnz[i] = olen;
2627aac34f13SBarry Smith   }
2628aac34f13SBarry Smith   ierr = MatMPIBAIJSetPreallocation(B,bs,0,d_nnz,0,o_nnz);CHKERRQ(ierr);
2629fca92195SBarry Smith   ierr = PetscFree2(d_nnz,o_nnz);CHKERRQ(ierr);
2630aac34f13SBarry Smith 
2631b8d659d7SLisandro Dalcin   values = (PetscScalar*)V;
2632b8d659d7SLisandro Dalcin   if (!values) {
263337cd3c0dSBarry Smith     ierr = PetscCalloc1(bs*bs*nz_max,&values);CHKERRQ(ierr);
2634b8d659d7SLisandro Dalcin   }
2635b8d659d7SLisandro Dalcin   for (i=0; i<m; i++) {
2636b8d659d7SLisandro Dalcin     PetscInt          row    = i + rstart;
2637cf12db73SBarry Smith     PetscInt          ncols  = ii[i+1] - ii[i];
2638cf12db73SBarry Smith     const PetscInt    *icols = jj + ii[i];
2639bb80cfbbSStefano Zampini     if (bs == 1 || !roworiented) {         /* block ordering matches the non-nested layout of MatSetValues so we can insert entire rows */
2640cf12db73SBarry Smith       const PetscScalar *svals = values + (V ? (bs*bs*ii[i]) : 0);
2641b8d659d7SLisandro Dalcin       ierr = MatSetValuesBlocked_MPIBAIJ(B,1,&row,ncols,icols,svals,INSERT_VALUES);CHKERRQ(ierr);
26423adadaf3SJed Brown     } else {                    /* block ordering does not match so we can only insert one block at a time. */
26433adadaf3SJed Brown       PetscInt j;
26443adadaf3SJed Brown       for (j=0; j<ncols; j++) {
26453adadaf3SJed Brown         const PetscScalar *svals = values + (V ? (bs*bs*(ii[i]+j)) : 0);
26463adadaf3SJed Brown         ierr = MatSetValuesBlocked_MPIBAIJ(B,1,&row,1,&icols[j],svals,INSERT_VALUES);CHKERRQ(ierr);
26473adadaf3SJed Brown       }
26483adadaf3SJed Brown     }
2649aac34f13SBarry Smith   }
2650aac34f13SBarry Smith 
2651b8d659d7SLisandro Dalcin   if (!V) { ierr = PetscFree(values);CHKERRQ(ierr); }
26523bd0feecSPierre Jolivet   nooffprocentries    = B->nooffprocentries;
26533bd0feecSPierre Jolivet   B->nooffprocentries = PETSC_TRUE;
2654aac34f13SBarry Smith   ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
2655aac34f13SBarry Smith   ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
26563bd0feecSPierre Jolivet   B->nooffprocentries = nooffprocentries;
26573bd0feecSPierre Jolivet 
26587827cd58SJed Brown   ierr = MatSetOption(B,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_TRUE);CHKERRQ(ierr);
2659aac34f13SBarry Smith   PetscFunctionReturn(0);
2660aac34f13SBarry Smith }
2661aac34f13SBarry Smith 
2662aac34f13SBarry Smith /*@C
2663664954b6SBarry Smith    MatMPIBAIJSetPreallocationCSR - Creates a sparse parallel matrix in BAIJ format using the given nonzero structure and (optional) numerical values
2664aac34f13SBarry Smith 
2665d083f849SBarry Smith    Collective
2666aac34f13SBarry Smith 
2667aac34f13SBarry Smith    Input Parameters:
26681c4f3114SJed Brown +  B - the matrix
2669dfb205c3SBarry Smith .  bs - the block size
2670aac34f13SBarry Smith .  i - the indices into j for the start of each local row (starts with zero)
2671aac34f13SBarry Smith .  j - the column indices for each local row (starts with zero) these must be sorted for each row
2672aac34f13SBarry Smith -  v - optional values in the matrix
2673aac34f13SBarry Smith 
2674664954b6SBarry Smith    Level: advanced
2675aac34f13SBarry Smith 
267695452b02SPatrick Sanan    Notes:
267795452b02SPatrick Sanan     The order of the entries in values is specified by the MatOption MAT_ROW_ORIENTED.  For example, C programs
26783adadaf3SJed Brown    may want to use the default MAT_ROW_ORIENTED=PETSC_TRUE and use an array v[nnz][bs][bs] where the second index is
26793adadaf3SJed Brown    over rows within a block and the last index is over columns within a block row.  Fortran programs will likely set
26803adadaf3SJed Brown    MAT_ROW_ORIENTED=PETSC_FALSE and use a Fortran array v(bs,bs,nnz) in which the first index is over rows within a
26813adadaf3SJed Brown    block column and the second index is over columns within a block.
26823adadaf3SJed Brown 
2683664954b6SBarry Smith    Though this routine has Preallocation() in the name it also sets the exact nonzero locations of the matrix entries and usually the numerical values as well
2684664954b6SBarry Smith 
26853adadaf3SJed Brown .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatMPIBAIJSetPreallocation(), MatCreateAIJ(), MPIAIJ, MatCreateMPIBAIJWithArrays(), MPIBAIJ
2686aac34f13SBarry Smith @*/
26877087cfbeSBarry Smith PetscErrorCode  MatMPIBAIJSetPreallocationCSR(Mat B,PetscInt bs,const PetscInt i[],const PetscInt j[], const PetscScalar v[])
2688aac34f13SBarry Smith {
26894ac538c5SBarry Smith   PetscErrorCode ierr;
2690aac34f13SBarry Smith 
2691aac34f13SBarry Smith   PetscFunctionBegin;
26926ba663aaSJed Brown   PetscValidHeaderSpecific(B,MAT_CLASSID,1);
26936ba663aaSJed Brown   PetscValidType(B,1);
26946ba663aaSJed Brown   PetscValidLogicalCollectiveInt(B,bs,2);
26954ac538c5SBarry Smith   ierr = PetscTryMethod(B,"MatMPIBAIJSetPreallocationCSR_C",(Mat,PetscInt,const PetscInt[],const PetscInt[],const PetscScalar[]),(B,bs,i,j,v));CHKERRQ(ierr);
2696aac34f13SBarry Smith   PetscFunctionReturn(0);
2697aac34f13SBarry Smith }
2698aac34f13SBarry Smith 
2699b2573a8aSBarry Smith PetscErrorCode  MatMPIBAIJSetPreallocation_MPIBAIJ(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt *d_nnz,PetscInt o_nz,const PetscInt *o_nnz)
2700a23d5eceSKris Buschelman {
2701a23d5eceSKris Buschelman   Mat_MPIBAIJ    *b;
2702dfbe8321SBarry Smith   PetscErrorCode ierr;
2703535b19f3SBarry Smith   PetscInt       i;
27045d2a9ed1SStefano Zampini   PetscMPIInt    size;
2705a23d5eceSKris Buschelman 
2706a23d5eceSKris Buschelman   PetscFunctionBegin;
270733d57670SJed Brown   ierr = MatSetBlockSize(B,PetscAbs(bs));CHKERRQ(ierr);
270826283091SBarry Smith   ierr = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr);
270926283091SBarry Smith   ierr = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr);
2710e02043d6SBarry Smith   ierr = PetscLayoutGetBlockSize(B->rmap,&bs);CHKERRQ(ierr);
2711899cda47SBarry Smith 
2712a23d5eceSKris Buschelman   if (d_nnz) {
2713d0f46423SBarry Smith     for (i=0; i<B->rmap->n/bs; i++) {
2714e32f2f54SBarry Smith       if (d_nnz[i] < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"d_nnz cannot be less than -1: local row %D value %D",i,d_nnz[i]);
2715a23d5eceSKris Buschelman     }
2716a23d5eceSKris Buschelman   }
2717a23d5eceSKris Buschelman   if (o_nnz) {
2718d0f46423SBarry Smith     for (i=0; i<B->rmap->n/bs; i++) {
2719e32f2f54SBarry Smith       if (o_nnz[i] < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"o_nnz cannot be less than -1: local row %D value %D",i,o_nnz[i]);
2720a23d5eceSKris Buschelman     }
2721a23d5eceSKris Buschelman   }
2722a23d5eceSKris Buschelman 
2723a23d5eceSKris Buschelman   b      = (Mat_MPIBAIJ*)B->data;
2724a23d5eceSKris Buschelman   b->bs2 = bs*bs;
2725d0f46423SBarry Smith   b->mbs = B->rmap->n/bs;
2726d0f46423SBarry Smith   b->nbs = B->cmap->n/bs;
2727d0f46423SBarry Smith   b->Mbs = B->rmap->N/bs;
2728d0f46423SBarry Smith   b->Nbs = B->cmap->N/bs;
2729a23d5eceSKris Buschelman 
2730a23d5eceSKris Buschelman   for (i=0; i<=b->size; i++) {
2731d0f46423SBarry Smith     b->rangebs[i] = B->rmap->range[i]/bs;
2732a23d5eceSKris Buschelman   }
2733d0f46423SBarry Smith   b->rstartbs = B->rmap->rstart/bs;
2734d0f46423SBarry Smith   b->rendbs   = B->rmap->rend/bs;
2735d0f46423SBarry Smith   b->cstartbs = B->cmap->rstart/bs;
2736d0f46423SBarry Smith   b->cendbs   = B->cmap->rend/bs;
2737a23d5eceSKris Buschelman 
2738cb7b82ddSBarry Smith #if defined(PETSC_USE_CTABLE)
2739cb7b82ddSBarry Smith   ierr = PetscTableDestroy(&b->colmap);CHKERRQ(ierr);
2740cb7b82ddSBarry Smith #else
2741cb7b82ddSBarry Smith   ierr = PetscFree(b->colmap);CHKERRQ(ierr);
2742cb7b82ddSBarry Smith #endif
2743cb7b82ddSBarry Smith   ierr = PetscFree(b->garray);CHKERRQ(ierr);
2744cb7b82ddSBarry Smith   ierr = VecDestroy(&b->lvec);CHKERRQ(ierr);
2745cb7b82ddSBarry Smith   ierr = VecScatterDestroy(&b->Mvctx);CHKERRQ(ierr);
2746cb7b82ddSBarry Smith 
2747cb7b82ddSBarry Smith   /* Because the B will have been resized we simply destroy it and create a new one each time */
27485d2a9ed1SStefano Zampini   ierr = MPI_Comm_size(PetscObjectComm((PetscObject)B),&size);CHKERRQ(ierr);
2749cb7b82ddSBarry Smith   ierr = MatDestroy(&b->B);CHKERRQ(ierr);
2750cb7b82ddSBarry Smith   ierr = MatCreate(PETSC_COMM_SELF,&b->B);CHKERRQ(ierr);
27515d2a9ed1SStefano Zampini   ierr = MatSetSizes(b->B,B->rmap->n,size > 1 ? B->cmap->N : 0,B->rmap->n,size > 1 ? B->cmap->N : 0);CHKERRQ(ierr);
2752cb7b82ddSBarry Smith   ierr = MatSetType(b->B,MATSEQBAIJ);CHKERRQ(ierr);
2753cb7b82ddSBarry Smith   ierr = PetscLogObjectParent((PetscObject)B,(PetscObject)b->B);CHKERRQ(ierr);
2754cb7b82ddSBarry Smith 
2755526dfc15SBarry Smith   if (!B->preallocated) {
2756f69a0ea3SMatthew Knepley     ierr = MatCreate(PETSC_COMM_SELF,&b->A);CHKERRQ(ierr);
2757d0f46423SBarry Smith     ierr = MatSetSizes(b->A,B->rmap->n,B->cmap->n,B->rmap->n,B->cmap->n);CHKERRQ(ierr);
27589c097c71SKris Buschelman     ierr = MatSetType(b->A,MATSEQBAIJ);CHKERRQ(ierr);
27593bb1ff40SBarry Smith     ierr = PetscLogObjectParent((PetscObject)B,(PetscObject)b->A);CHKERRQ(ierr);
2760ce94432eSBarry Smith     ierr = MatStashCreate_Private(PetscObjectComm((PetscObject)B),bs,&B->bstash);CHKERRQ(ierr);
2761526dfc15SBarry Smith   }
2762a23d5eceSKris Buschelman 
2763526dfc15SBarry Smith   ierr = MatSeqBAIJSetPreallocation(b->A,bs,d_nz,d_nnz);CHKERRQ(ierr);
2764526dfc15SBarry Smith   ierr = MatSeqBAIJSetPreallocation(b->B,bs,o_nz,o_nnz);CHKERRQ(ierr);
2765526dfc15SBarry Smith   B->preallocated  = PETSC_TRUE;
2766cb7b82ddSBarry Smith   B->was_assembled = PETSC_FALSE;
2767cb7b82ddSBarry Smith   B->assembled     = PETSC_FALSE;
2768a23d5eceSKris Buschelman   PetscFunctionReturn(0);
2769a23d5eceSKris Buschelman }
2770a23d5eceSKris Buschelman 
27717087cfbeSBarry Smith extern PetscErrorCode  MatDiagonalScaleLocal_MPIBAIJ(Mat,Vec);
27727087cfbeSBarry Smith extern PetscErrorCode  MatSetHashTableFactor_MPIBAIJ(Mat,PetscReal);
27735bf65638SKris Buschelman 
2774cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIBAIJ_MPIAdj(Mat B, MatType newtype,MatReuse reuse,Mat *adj)
277582094794SBarry Smith {
277682094794SBarry Smith   Mat_MPIBAIJ    *b = (Mat_MPIBAIJ*)B->data;
277782094794SBarry Smith   PetscErrorCode ierr;
277882094794SBarry Smith   Mat_SeqBAIJ    *d  = (Mat_SeqBAIJ*) b->A->data,*o = (Mat_SeqBAIJ*) b->B->data;
277982094794SBarry Smith   PetscInt       M   = B->rmap->n/B->rmap->bs,i,*ii,*jj,cnt,j,k,rstart = B->rmap->rstart/B->rmap->bs;
278082094794SBarry Smith   const PetscInt *id = d->i, *jd = d->j, *io = o->i, *jo = o->j, *garray = b->garray;
278182094794SBarry Smith 
278282094794SBarry Smith   PetscFunctionBegin;
2783854ce69bSBarry Smith   ierr  = PetscMalloc1(M+1,&ii);CHKERRQ(ierr);
278482094794SBarry Smith   ii[0] = 0;
278582094794SBarry Smith   for (i=0; i<M; i++) {
2786e32f2f54SBarry Smith     if ((id[i+1] - id[i]) < 0) SETERRQ3(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Indices wrong %D %D %D",i,id[i],id[i+1]);
2787e32f2f54SBarry Smith     if ((io[i+1] - io[i]) < 0) SETERRQ3(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Indices wrong %D %D %D",i,io[i],io[i+1]);
278882094794SBarry Smith     ii[i+1] = ii[i] + id[i+1] - id[i] + io[i+1] - io[i];
27895ee9ba1cSJed Brown     /* remove one from count of matrix has diagonal */
27905ee9ba1cSJed Brown     for (j=id[i]; j<id[i+1]; j++) {
27915ee9ba1cSJed Brown       if (jd[j] == i) {ii[i+1]--;break;}
27925ee9ba1cSJed Brown     }
279382094794SBarry Smith   }
2794785e854fSJed Brown   ierr = PetscMalloc1(ii[M],&jj);CHKERRQ(ierr);
279582094794SBarry Smith   cnt  = 0;
279682094794SBarry Smith   for (i=0; i<M; i++) {
279782094794SBarry Smith     for (j=io[i]; j<io[i+1]; j++) {
279882094794SBarry Smith       if (garray[jo[j]] > rstart) break;
279982094794SBarry Smith       jj[cnt++] = garray[jo[j]];
280082094794SBarry Smith     }
280182094794SBarry Smith     for (k=id[i]; k<id[i+1]; k++) {
28025ee9ba1cSJed Brown       if (jd[k] != i) {
280382094794SBarry Smith         jj[cnt++] = rstart + jd[k];
280482094794SBarry Smith       }
28055ee9ba1cSJed Brown     }
280682094794SBarry Smith     for (; j<io[i+1]; j++) {
280782094794SBarry Smith       jj[cnt++] = garray[jo[j]];
280882094794SBarry Smith     }
280982094794SBarry Smith   }
2810ce94432eSBarry Smith   ierr = MatCreateMPIAdj(PetscObjectComm((PetscObject)B),M,B->cmap->N/B->rmap->bs,ii,jj,NULL,adj);CHKERRQ(ierr);
281182094794SBarry Smith   PetscFunctionReturn(0);
281282094794SBarry Smith }
281382094794SBarry Smith 
2814c6db04a5SJed Brown #include <../src/mat/impls/aij/mpi/mpiaij.h>
281562471d69SBarry Smith 
2816cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_SeqBAIJ_SeqAIJ(Mat,MatType,MatReuse,Mat*);
2817b2573a8aSBarry Smith 
2818cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIBAIJ_MPIAIJ(Mat A,MatType newtype,MatReuse reuse,Mat *newmat)
281962471d69SBarry Smith {
282062471d69SBarry Smith   PetscErrorCode ierr;
282162471d69SBarry Smith   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)A->data;
282262471d69SBarry Smith   Mat            B;
282385a69837SSatish Balay   Mat_MPIAIJ     *b;
282462471d69SBarry Smith 
282562471d69SBarry Smith   PetscFunctionBegin;
2826ce94432eSBarry Smith   if (!A->assembled) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_SUP,"Matrix must be assembled");
282762471d69SBarry Smith 
28280f6d62edSLisandro Dalcin   if (reuse == MAT_REUSE_MATRIX) {
28290f6d62edSLisandro Dalcin     B = *newmat;
28300f6d62edSLisandro Dalcin   } else {
2831ce94432eSBarry Smith     ierr = MatCreate(PetscObjectComm((PetscObject)A),&B);CHKERRQ(ierr);
28326d0a4a0eSHong Zhang     ierr = MatSetType(B,MATMPIAIJ);CHKERRQ(ierr);
2833f090d951SRémi Lacroix     ierr = MatSetSizes(B,A->rmap->n,A->cmap->n,A->rmap->N,A->cmap->N);CHKERRQ(ierr);
2834f090d951SRémi Lacroix     ierr = MatSetBlockSizes(B,A->rmap->bs,A->cmap->bs);CHKERRQ(ierr);
28350298fd71SBarry Smith     ierr = MatSeqAIJSetPreallocation(B,0,NULL);CHKERRQ(ierr);
28360298fd71SBarry Smith     ierr = MatMPIAIJSetPreallocation(B,0,NULL,0,NULL);CHKERRQ(ierr);
28370f6d62edSLisandro Dalcin   }
283862471d69SBarry Smith   b = (Mat_MPIAIJ*) B->data;
283962471d69SBarry Smith 
28400f6d62edSLisandro Dalcin   if (reuse == MAT_REUSE_MATRIX) {
28410f6d62edSLisandro Dalcin     ierr = MatConvert_SeqBAIJ_SeqAIJ(a->A, MATSEQAIJ, MAT_REUSE_MATRIX, &b->A);CHKERRQ(ierr);
28420f6d62edSLisandro Dalcin     ierr = MatConvert_SeqBAIJ_SeqAIJ(a->B, MATSEQAIJ, MAT_REUSE_MATRIX, &b->B);CHKERRQ(ierr);
28430f6d62edSLisandro Dalcin   } else {
28446bf464f9SBarry Smith     ierr = MatDestroy(&b->A);CHKERRQ(ierr);
28456bf464f9SBarry Smith     ierr = MatDestroy(&b->B);CHKERRQ(ierr);
2846ab9863d7SBarry Smith     ierr = MatDisAssemble_MPIBAIJ(A);CHKERRQ(ierr);
284762471d69SBarry Smith     ierr = MatConvert_SeqBAIJ_SeqAIJ(a->A, MATSEQAIJ, MAT_INITIAL_MATRIX, &b->A);CHKERRQ(ierr);
284862471d69SBarry Smith     ierr = MatConvert_SeqBAIJ_SeqAIJ(a->B, MATSEQAIJ, MAT_INITIAL_MATRIX, &b->B);CHKERRQ(ierr);
28496a719282SBarry Smith     ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
28506a719282SBarry Smith     ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
28510f6d62edSLisandro Dalcin   }
28520f6d62edSLisandro Dalcin   ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
28530f6d62edSLisandro Dalcin   ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
28540f6d62edSLisandro Dalcin 
2855511c6705SHong Zhang   if (reuse == MAT_INPLACE_MATRIX) {
285628be2f97SBarry Smith     ierr = MatHeaderReplace(A,&B);CHKERRQ(ierr);
285762471d69SBarry Smith   } else {
285862471d69SBarry Smith    *newmat = B;
285962471d69SBarry Smith   }
286062471d69SBarry Smith   PetscFunctionReturn(0);
286162471d69SBarry Smith }
286262471d69SBarry Smith 
28630bad9183SKris Buschelman /*MC
2864fafad747SKris Buschelman    MATMPIBAIJ - MATMPIBAIJ = "mpibaij" - A matrix type to be used for distributed block sparse matrices.
28650bad9183SKris Buschelman 
28660bad9183SKris Buschelman    Options Database Keys:
28678c07d4e3SBarry Smith + -mat_type mpibaij - sets the matrix type to "mpibaij" during a call to MatSetFromOptions()
28688c07d4e3SBarry Smith . -mat_block_size <bs> - set the blocksize used to store the matrix
28698c07d4e3SBarry Smith - -mat_use_hash_table <fact>
28700bad9183SKris Buschelman 
28710bad9183SKris Buschelman    Level: beginner
28720cd7f59aSBarry Smith 
28730cd7f59aSBarry Smith    Notes:
28740cd7f59aSBarry Smith     MatSetOptions(,MAT_STRUCTURE_ONLY,PETSC_TRUE) may be called for this matrix type. In this no
28750cd7f59aSBarry Smith     space is allocated for the nonzero entries and any entries passed with MatSetValues() are ignored
28760bad9183SKris Buschelman 
2877fd292e60Sprj- .seealso: MatCreateBAIJ
28780bad9183SKris Buschelman M*/
28790bad9183SKris Buschelman 
2880cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIBAIJ_MPIBSTRM(Mat,MatType,MatReuse,Mat*);
2881c0cdd4a1SDahai Guo 
28828cc058d9SJed Brown PETSC_EXTERN PetscErrorCode MatCreate_MPIBAIJ(Mat B)
2883273d9f13SBarry Smith {
2884273d9f13SBarry Smith   Mat_MPIBAIJ    *b;
2885dfbe8321SBarry Smith   PetscErrorCode ierr;
288694ae4db5SBarry Smith   PetscBool      flg = PETSC_FALSE;
2887273d9f13SBarry Smith 
2888273d9f13SBarry Smith   PetscFunctionBegin;
2889b00a9115SJed Brown   ierr    = PetscNewLog(B,&b);CHKERRQ(ierr);
289082502324SSatish Balay   B->data = (void*)b;
289182502324SSatish Balay 
2892273d9f13SBarry Smith   ierr         = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr);
2893273d9f13SBarry Smith   B->assembled = PETSC_FALSE;
2894273d9f13SBarry Smith 
2895273d9f13SBarry Smith   B->insertmode = NOT_SET_VALUES;
2896ce94432eSBarry Smith   ierr          = MPI_Comm_rank(PetscObjectComm((PetscObject)B),&b->rank);CHKERRQ(ierr);
2897ce94432eSBarry Smith   ierr          = MPI_Comm_size(PetscObjectComm((PetscObject)B),&b->size);CHKERRQ(ierr);
2898273d9f13SBarry Smith 
2899273d9f13SBarry Smith   /* build local table of row and column ownerships */
2900854ce69bSBarry Smith   ierr = PetscMalloc1(b->size+1,&b->rangebs);CHKERRQ(ierr);
2901273d9f13SBarry Smith 
2902273d9f13SBarry Smith   /* build cache for off array entries formed */
2903ce94432eSBarry Smith   ierr = MatStashCreate_Private(PetscObjectComm((PetscObject)B),1,&B->stash);CHKERRQ(ierr);
290426fbe8dcSKarl Rupp 
2905273d9f13SBarry Smith   b->donotstash  = PETSC_FALSE;
29060298fd71SBarry Smith   b->colmap      = NULL;
29070298fd71SBarry Smith   b->garray      = NULL;
2908273d9f13SBarry Smith   b->roworiented = PETSC_TRUE;
2909273d9f13SBarry Smith 
2910273d9f13SBarry Smith   /* stuff used in block assembly */
2911273d9f13SBarry Smith   b->barray = 0;
2912273d9f13SBarry Smith 
2913273d9f13SBarry Smith   /* stuff used for matrix vector multiply */
2914273d9f13SBarry Smith   b->lvec  = 0;
2915273d9f13SBarry Smith   b->Mvctx = 0;
2916273d9f13SBarry Smith 
2917273d9f13SBarry Smith   /* stuff for MatGetRow() */
2918273d9f13SBarry Smith   b->rowindices   = 0;
2919273d9f13SBarry Smith   b->rowvalues    = 0;
2920273d9f13SBarry Smith   b->getrowactive = PETSC_FALSE;
2921273d9f13SBarry Smith 
2922273d9f13SBarry Smith   /* hash table stuff */
2923273d9f13SBarry Smith   b->ht           = 0;
2924273d9f13SBarry Smith   b->hd           = 0;
2925273d9f13SBarry Smith   b->ht_size      = 0;
2926273d9f13SBarry Smith   b->ht_flag      = PETSC_FALSE;
2927273d9f13SBarry Smith   b->ht_fact      = 0;
2928273d9f13SBarry Smith   b->ht_total_ct  = 0;
2929273d9f13SBarry Smith   b->ht_insert_ct = 0;
2930273d9f13SBarry Smith 
29317dae84e0SHong Zhang   /* stuff for MatCreateSubMatrices_MPIBAIJ_local() */
29327a868f3eSHong Zhang   b->ijonly = PETSC_FALSE;
29337a868f3eSHong Zhang 
29348c07d4e3SBarry Smith 
2935bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpibaij_mpiadj_C",MatConvert_MPIBAIJ_MPIAdj);CHKERRQ(ierr);
2936bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpibaij_mpiaij_C",MatConvert_MPIBAIJ_MPIAIJ);CHKERRQ(ierr);
2937bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpibaij_mpisbaij_C",MatConvert_MPIBAIJ_MPISBAIJ);CHKERRQ(ierr);
29387ea3e4caSstefano_zampini #if defined(PETSC_HAVE_HYPRE)
29397ea3e4caSstefano_zampini   ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpibaij_hypre_C",MatConvert_AIJ_HYPRE);CHKERRQ(ierr);
29407ea3e4caSstefano_zampini #endif
2941bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatStoreValues_C",MatStoreValues_MPIBAIJ);CHKERRQ(ierr);
2942bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatRetrieveValues_C",MatRetrieveValues_MPIBAIJ);CHKERRQ(ierr);
2943bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatMPIBAIJSetPreallocation_C",MatMPIBAIJSetPreallocation_MPIBAIJ);CHKERRQ(ierr);
2944bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatMPIBAIJSetPreallocationCSR_C",MatMPIBAIJSetPreallocationCSR_MPIBAIJ);CHKERRQ(ierr);
2945bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatDiagonalScaleLocal_C",MatDiagonalScaleLocal_MPIBAIJ);CHKERRQ(ierr);
2946bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatSetHashTableFactor_C",MatSetHashTableFactor_MPIBAIJ);CHKERRQ(ierr);
2947c9225affSStefano Zampini   ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpibaij_is_C",MatConvert_XAIJ_IS);CHKERRQ(ierr);
294817667f90SBarry Smith   ierr = PetscObjectChangeTypeName((PetscObject)B,MATMPIBAIJ);CHKERRQ(ierr);
294994ae4db5SBarry Smith 
295094ae4db5SBarry Smith   ierr = PetscOptionsBegin(PetscObjectComm((PetscObject)B),NULL,"Options for loading MPIBAIJ matrix 1","Mat");CHKERRQ(ierr);
2951abf3b562SBarry Smith   ierr = PetscOptionsName("-mat_use_hash_table","Use hash table to save time in constructing matrix","MatSetOption",&flg);CHKERRQ(ierr);
295294ae4db5SBarry Smith   if (flg) {
295394ae4db5SBarry Smith     PetscReal fact = 1.39;
295494ae4db5SBarry Smith     ierr = MatSetOption(B,MAT_USE_HASH_TABLE,PETSC_TRUE);CHKERRQ(ierr);
295594ae4db5SBarry Smith     ierr = PetscOptionsReal("-mat_use_hash_table","Use hash table factor","MatMPIBAIJSetHashTableFactor",fact,&fact,NULL);CHKERRQ(ierr);
295694ae4db5SBarry Smith     if (fact <= 1.0) fact = 1.39;
295794ae4db5SBarry Smith     ierr = MatMPIBAIJSetHashTableFactor(B,fact);CHKERRQ(ierr);
295894ae4db5SBarry Smith     ierr = PetscInfo1(B,"Hash table Factor used %5.2f\n",fact);CHKERRQ(ierr);
295994ae4db5SBarry Smith   }
296094ae4db5SBarry Smith   ierr = PetscOptionsEnd();CHKERRQ(ierr);
2961273d9f13SBarry Smith   PetscFunctionReturn(0);
2962273d9f13SBarry Smith }
2963273d9f13SBarry Smith 
2964209238afSKris Buschelman /*MC
2965002d173eSKris Buschelman    MATBAIJ - MATBAIJ = "baij" - A matrix type to be used for block sparse matrices.
2966209238afSKris Buschelman 
2967209238afSKris Buschelman    This matrix type is identical to MATSEQBAIJ when constructed with a single process communicator,
2968209238afSKris Buschelman    and MATMPIBAIJ otherwise.
2969209238afSKris Buschelman 
2970209238afSKris Buschelman    Options Database Keys:
2971209238afSKris Buschelman . -mat_type baij - sets the matrix type to "baij" during a call to MatSetFromOptions()
2972209238afSKris Buschelman 
2973209238afSKris Buschelman   Level: beginner
2974209238afSKris Buschelman 
297569b1f4b7SBarry Smith .seealso: MatCreateBAIJ(),MATSEQBAIJ,MATMPIBAIJ, MatMPIBAIJSetPreallocation(), MatMPIBAIJSetPreallocationCSR()
2976209238afSKris Buschelman M*/
2977209238afSKris Buschelman 
2978273d9f13SBarry Smith /*@C
2979aac34f13SBarry Smith    MatMPIBAIJSetPreallocation - Allocates memory for a sparse parallel matrix in block AIJ format
2980273d9f13SBarry Smith    (block compressed row).  For good matrix assembly performance
2981273d9f13SBarry Smith    the user should preallocate the matrix storage by setting the parameters
2982273d9f13SBarry Smith    d_nz (or d_nnz) and o_nz (or o_nnz).  By setting these parameters accurately,
2983273d9f13SBarry Smith    performance can be increased by more than a factor of 50.
2984273d9f13SBarry Smith 
2985273d9f13SBarry Smith    Collective on Mat
2986273d9f13SBarry Smith 
2987273d9f13SBarry Smith    Input Parameters:
29881c4f3114SJed Brown +  B - the matrix
2989bb7ae925SBarry Smith .  bs   - size of block, the blocks are ALWAYS square. One can use MatSetBlockSizes() to set a different row and column blocksize but the row
2990bb7ae925SBarry Smith           blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with MatCreateVecs()
2991273d9f13SBarry Smith .  d_nz  - number of block nonzeros per block row in diagonal portion of local
2992273d9f13SBarry Smith            submatrix  (same for all local rows)
2993273d9f13SBarry Smith .  d_nnz - array containing the number of block nonzeros in the various block rows
2994273d9f13SBarry Smith            of the in diagonal portion of the local (possibly different for each block
29950298fd71SBarry Smith            row) or NULL.  If you plan to factor the matrix you must leave room for the diagonal entry and
299695742e49SBarry Smith            set it even if it is zero.
2997273d9f13SBarry Smith .  o_nz  - number of block nonzeros per block row in the off-diagonal portion of local
2998273d9f13SBarry Smith            submatrix (same for all local rows).
2999273d9f13SBarry Smith -  o_nnz - array containing the number of nonzeros in the various block rows of the
3000273d9f13SBarry Smith            off-diagonal portion of the local submatrix (possibly different for
30010298fd71SBarry Smith            each block row) or NULL.
3002273d9f13SBarry Smith 
300349a6f317SBarry Smith    If the *_nnz parameter is given then the *_nz parameter is ignored
3004273d9f13SBarry Smith 
3005273d9f13SBarry Smith    Options Database Keys:
30068c07d4e3SBarry Smith +   -mat_block_size - size of the blocks to use
30078c07d4e3SBarry Smith -   -mat_use_hash_table <fact>
3008273d9f13SBarry Smith 
3009273d9f13SBarry Smith    Notes:
3010273d9f13SBarry Smith    If PETSC_DECIDE or  PETSC_DETERMINE is used for a particular argument on one processor
3011273d9f13SBarry Smith    than it must be used on all processors that share the object for that argument.
3012273d9f13SBarry Smith 
3013273d9f13SBarry Smith    Storage Information:
3014273d9f13SBarry Smith    For a square global matrix we define each processor's diagonal portion
3015273d9f13SBarry Smith    to be its local rows and the corresponding columns (a square submatrix);
3016273d9f13SBarry Smith    each processor's off-diagonal portion encompasses the remainder of the
3017273d9f13SBarry Smith    local matrix (a rectangular submatrix).
3018273d9f13SBarry Smith 
3019273d9f13SBarry Smith    The user can specify preallocated storage for the diagonal part of
3020273d9f13SBarry Smith    the local submatrix with either d_nz or d_nnz (not both).  Set
30210298fd71SBarry Smith    d_nz=PETSC_DEFAULT and d_nnz=NULL for PETSc to control dynamic
3022273d9f13SBarry Smith    memory allocation.  Likewise, specify preallocated storage for the
3023273d9f13SBarry Smith    off-diagonal part of the local submatrix with o_nz or o_nnz (not both).
3024273d9f13SBarry Smith 
3025273d9f13SBarry Smith    Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
3026273d9f13SBarry Smith    the figure below we depict these three local rows and all columns (0-11).
3027273d9f13SBarry Smith 
3028273d9f13SBarry Smith .vb
3029273d9f13SBarry Smith            0 1 2 3 4 5 6 7 8 9 10 11
3030a4b1a0f6SJed Brown           --------------------------
3031273d9f13SBarry Smith    row 3  |o o o d d d o o o o  o  o
3032273d9f13SBarry Smith    row 4  |o o o d d d o o o o  o  o
3033273d9f13SBarry Smith    row 5  |o o o d d d o o o o  o  o
3034a4b1a0f6SJed Brown           --------------------------
3035273d9f13SBarry Smith .ve
3036273d9f13SBarry Smith 
3037273d9f13SBarry Smith    Thus, any entries in the d locations are stored in the d (diagonal)
3038273d9f13SBarry Smith    submatrix, and any entries in the o locations are stored in the
3039273d9f13SBarry Smith    o (off-diagonal) submatrix.  Note that the d and the o submatrices are
3040273d9f13SBarry Smith    stored simply in the MATSEQBAIJ format for compressed row storage.
3041273d9f13SBarry Smith 
3042273d9f13SBarry Smith    Now d_nz should indicate the number of block nonzeros per row in the d matrix,
3043273d9f13SBarry Smith    and o_nz should indicate the number of block nonzeros per row in the o matrix.
3044273d9f13SBarry Smith    In general, for PDE problems in which most nonzeros are near the diagonal,
3045273d9f13SBarry Smith    one expects d_nz >> o_nz.   For large problems you MUST preallocate memory
3046273d9f13SBarry Smith    or you will get TERRIBLE performance; see the users' manual chapter on
3047273d9f13SBarry Smith    matrices.
3048273d9f13SBarry Smith 
3049aa95bbe8SBarry Smith    You can call MatGetInfo() to get information on how effective the preallocation was;
3050aa95bbe8SBarry Smith    for example the fields mallocs,nz_allocated,nz_used,nz_unneeded;
3051aa95bbe8SBarry Smith    You can also run with the option -info and look for messages with the string
3052aa95bbe8SBarry Smith    malloc in them to see if additional memory allocation was needed.
3053aa95bbe8SBarry Smith 
3054273d9f13SBarry Smith    Level: intermediate
3055273d9f13SBarry Smith 
3056ab978733SBarry Smith .seealso: MatCreate(), MatCreateSeqBAIJ(), MatSetValues(), MatCreateBAIJ(), MatMPIBAIJSetPreallocationCSR(), PetscSplitOwnership()
3057273d9f13SBarry Smith @*/
30587087cfbeSBarry Smith PetscErrorCode  MatMPIBAIJSetPreallocation(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[])
3059273d9f13SBarry Smith {
30604ac538c5SBarry Smith   PetscErrorCode ierr;
3061273d9f13SBarry Smith 
3062273d9f13SBarry Smith   PetscFunctionBegin;
30636ba663aaSJed Brown   PetscValidHeaderSpecific(B,MAT_CLASSID,1);
30646ba663aaSJed Brown   PetscValidType(B,1);
30656ba663aaSJed Brown   PetscValidLogicalCollectiveInt(B,bs,2);
30664ac538c5SBarry Smith   ierr = PetscTryMethod(B,"MatMPIBAIJSetPreallocation_C",(Mat,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[]),(B,bs,d_nz,d_nnz,o_nz,o_nnz));CHKERRQ(ierr);
3067273d9f13SBarry Smith   PetscFunctionReturn(0);
3068273d9f13SBarry Smith }
3069273d9f13SBarry Smith 
307079bdfe76SSatish Balay /*@C
307169b1f4b7SBarry Smith    MatCreateBAIJ - Creates a sparse parallel matrix in block AIJ format
307279bdfe76SSatish Balay    (block compressed row).  For good matrix assembly performance
307379bdfe76SSatish Balay    the user should preallocate the matrix storage by setting the parameters
307479bdfe76SSatish Balay    d_nz (or d_nnz) and o_nz (or o_nnz).  By setting these parameters accurately,
307579bdfe76SSatish Balay    performance can be increased by more than a factor of 50.
307679bdfe76SSatish Balay 
3077d083f849SBarry Smith    Collective
3078db81eaa0SLois Curfman McInnes 
307979bdfe76SSatish Balay    Input Parameters:
3080db81eaa0SLois Curfman McInnes +  comm - MPI communicator
3081bb7ae925SBarry Smith .  bs   - size of block, the blocks are ALWAYS square. One can use MatSetBlockSizes() to set a different row and column blocksize but the row
3082bb7ae925SBarry Smith           blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with MatCreateVecs()
308379bdfe76SSatish Balay .  m - number of local rows (or PETSC_DECIDE to have calculated if M is given)
308492e8d321SLois Curfman McInnes            This value should be the same as the local size used in creating the
308592e8d321SLois Curfman McInnes            y vector for the matrix-vector product y = Ax.
308692e8d321SLois Curfman McInnes .  n - number of local columns (or PETSC_DECIDE to have calculated if N is given)
308792e8d321SLois Curfman McInnes            This value should be the same as the local size used in creating the
308892e8d321SLois Curfman McInnes            x vector for the matrix-vector product y = Ax.
3089be79a94dSBarry Smith .  M - number of global rows (or PETSC_DETERMINE to have calculated if m is given)
3090be79a94dSBarry Smith .  N - number of global columns (or PETSC_DETERMINE to have calculated if n is given)
309147a75d0bSBarry Smith .  d_nz  - number of nonzero blocks per block row in diagonal portion of local
309279bdfe76SSatish Balay            submatrix  (same for all local rows)
309347a75d0bSBarry Smith .  d_nnz - array containing the number of nonzero blocks in the various block rows
309492e8d321SLois Curfman McInnes            of the in diagonal portion of the local (possibly different for each block
30950298fd71SBarry Smith            row) or NULL.  If you plan to factor the matrix you must leave room for the diagonal entry
309695742e49SBarry Smith            and set it even if it is zero.
309747a75d0bSBarry Smith .  o_nz  - number of nonzero blocks per block row in the off-diagonal portion of local
309879bdfe76SSatish Balay            submatrix (same for all local rows).
309947a75d0bSBarry Smith -  o_nnz - array containing the number of nonzero blocks in the various block rows of the
310092e8d321SLois Curfman McInnes            off-diagonal portion of the local submatrix (possibly different for
31010298fd71SBarry Smith            each block row) or NULL.
310279bdfe76SSatish Balay 
310379bdfe76SSatish Balay    Output Parameter:
310479bdfe76SSatish Balay .  A - the matrix
310579bdfe76SSatish Balay 
3106db81eaa0SLois Curfman McInnes    Options Database Keys:
31078c07d4e3SBarry Smith +   -mat_block_size - size of the blocks to use
31088c07d4e3SBarry Smith -   -mat_use_hash_table <fact>
31093ffaccefSLois Curfman McInnes 
3110175b88e8SBarry Smith    It is recommended that one use the MatCreate(), MatSetType() and/or MatSetFromOptions(),
3111f6f02116SRichard Tran Mills    MatXXXXSetPreallocation() paradigm instead of this routine directly.
3112175b88e8SBarry Smith    [MatXXXXSetPreallocation() is, for example, MatSeqAIJSetPreallocation]
3113175b88e8SBarry Smith 
3114b259b22eSLois Curfman McInnes    Notes:
311549a6f317SBarry Smith    If the *_nnz parameter is given then the *_nz parameter is ignored
311649a6f317SBarry Smith 
311747a75d0bSBarry Smith    A nonzero block is any block that as 1 or more nonzeros in it
311847a75d0bSBarry Smith 
311979bdfe76SSatish Balay    The user MUST specify either the local or global matrix dimensions
312079bdfe76SSatish Balay    (possibly both).
312179bdfe76SSatish Balay 
3122be79a94dSBarry Smith    If PETSC_DECIDE or  PETSC_DETERMINE is used for a particular argument on one processor
3123be79a94dSBarry Smith    than it must be used on all processors that share the object for that argument.
3124be79a94dSBarry Smith 
312579bdfe76SSatish Balay    Storage Information:
312679bdfe76SSatish Balay    For a square global matrix we define each processor's diagonal portion
312779bdfe76SSatish Balay    to be its local rows and the corresponding columns (a square submatrix);
312879bdfe76SSatish Balay    each processor's off-diagonal portion encompasses the remainder of the
312979bdfe76SSatish Balay    local matrix (a rectangular submatrix).
313079bdfe76SSatish Balay 
313179bdfe76SSatish Balay    The user can specify preallocated storage for the diagonal part of
313279bdfe76SSatish Balay    the local submatrix with either d_nz or d_nnz (not both).  Set
31330298fd71SBarry Smith    d_nz=PETSC_DEFAULT and d_nnz=NULL for PETSc to control dynamic
313479bdfe76SSatish Balay    memory allocation.  Likewise, specify preallocated storage for the
313579bdfe76SSatish Balay    off-diagonal part of the local submatrix with o_nz or o_nnz (not both).
313679bdfe76SSatish Balay 
313779bdfe76SSatish Balay    Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
313879bdfe76SSatish Balay    the figure below we depict these three local rows and all columns (0-11).
313979bdfe76SSatish Balay 
3140db81eaa0SLois Curfman McInnes .vb
3141db81eaa0SLois Curfman McInnes            0 1 2 3 4 5 6 7 8 9 10 11
3142a4b1a0f6SJed Brown           --------------------------
3143db81eaa0SLois Curfman McInnes    row 3  |o o o d d d o o o o  o  o
3144db81eaa0SLois Curfman McInnes    row 4  |o o o d d d o o o o  o  o
3145db81eaa0SLois Curfman McInnes    row 5  |o o o d d d o o o o  o  o
3146a4b1a0f6SJed Brown           --------------------------
3147db81eaa0SLois Curfman McInnes .ve
314879bdfe76SSatish Balay 
314979bdfe76SSatish Balay    Thus, any entries in the d locations are stored in the d (diagonal)
315079bdfe76SSatish Balay    submatrix, and any entries in the o locations are stored in the
315179bdfe76SSatish Balay    o (off-diagonal) submatrix.  Note that the d and the o submatrices are
315257b952d6SSatish Balay    stored simply in the MATSEQBAIJ format for compressed row storage.
315379bdfe76SSatish Balay 
3154d64ed03dSBarry Smith    Now d_nz should indicate the number of block nonzeros per row in the d matrix,
3155d64ed03dSBarry Smith    and o_nz should indicate the number of block nonzeros per row in the o matrix.
315679bdfe76SSatish Balay    In general, for PDE problems in which most nonzeros are near the diagonal,
315792e8d321SLois Curfman McInnes    one expects d_nz >> o_nz.   For large problems you MUST preallocate memory
315892e8d321SLois Curfman McInnes    or you will get TERRIBLE performance; see the users' manual chapter on
31596da5968aSLois Curfman McInnes    matrices.
316079bdfe76SSatish Balay 
3161027ccd11SLois Curfman McInnes    Level: intermediate
3162027ccd11SLois Curfman McInnes 
316369b1f4b7SBarry Smith .seealso: MatCreate(), MatCreateSeqBAIJ(), MatSetValues(), MatCreateBAIJ(), MatMPIBAIJSetPreallocation(), MatMPIBAIJSetPreallocationCSR()
316479bdfe76SSatish Balay @*/
316569b1f4b7SBarry Smith PetscErrorCode  MatCreateBAIJ(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[],Mat *A)
316679bdfe76SSatish Balay {
31676849ba73SBarry Smith   PetscErrorCode ierr;
3168b24ad042SBarry Smith   PetscMPIInt    size;
316979bdfe76SSatish Balay 
3170d64ed03dSBarry Smith   PetscFunctionBegin;
3171f69a0ea3SMatthew Knepley   ierr = MatCreate(comm,A);CHKERRQ(ierr);
3172f69a0ea3SMatthew Knepley   ierr = MatSetSizes(*A,m,n,M,N);CHKERRQ(ierr);
3173d132466eSBarry Smith   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
3174273d9f13SBarry Smith   if (size > 1) {
3175273d9f13SBarry Smith     ierr = MatSetType(*A,MATMPIBAIJ);CHKERRQ(ierr);
3176273d9f13SBarry Smith     ierr = MatMPIBAIJSetPreallocation(*A,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr);
3177273d9f13SBarry Smith   } else {
3178273d9f13SBarry Smith     ierr = MatSetType(*A,MATSEQBAIJ);CHKERRQ(ierr);
3179273d9f13SBarry Smith     ierr = MatSeqBAIJSetPreallocation(*A,bs,d_nz,d_nnz);CHKERRQ(ierr);
31803914022bSBarry Smith   }
31813a40ed3dSBarry Smith   PetscFunctionReturn(0);
318279bdfe76SSatish Balay }
3183026e39d0SSatish Balay 
31846849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIBAIJ(Mat matin,MatDuplicateOption cpvalues,Mat *newmat)
31850ac07820SSatish Balay {
31860ac07820SSatish Balay   Mat            mat;
31870ac07820SSatish Balay   Mat_MPIBAIJ    *a,*oldmat = (Mat_MPIBAIJ*)matin->data;
3188dfbe8321SBarry Smith   PetscErrorCode ierr;
3189b24ad042SBarry Smith   PetscInt       len=0;
31900ac07820SSatish Balay 
3191d64ed03dSBarry Smith   PetscFunctionBegin;
31920ac07820SSatish Balay   *newmat = 0;
3193ce94432eSBarry Smith   ierr    = MatCreate(PetscObjectComm((PetscObject)matin),&mat);CHKERRQ(ierr);
3194d0f46423SBarry Smith   ierr    = MatSetSizes(mat,matin->rmap->n,matin->cmap->n,matin->rmap->N,matin->cmap->N);CHKERRQ(ierr);
31957adad957SLisandro Dalcin   ierr    = MatSetType(mat,((PetscObject)matin)->type_name);CHKERRQ(ierr);
31967fff6886SHong Zhang 
3197d5f3da31SBarry Smith   mat->factortype   = matin->factortype;
3198273d9f13SBarry Smith   mat->preallocated = PETSC_TRUE;
31990ac07820SSatish Balay   mat->assembled    = PETSC_TRUE;
32007fff6886SHong Zhang   mat->insertmode   = NOT_SET_VALUES;
32017fff6886SHong Zhang 
3202273d9f13SBarry Smith   a             = (Mat_MPIBAIJ*)mat->data;
3203d0f46423SBarry Smith   mat->rmap->bs = matin->rmap->bs;
32040ac07820SSatish Balay   a->bs2        = oldmat->bs2;
32050ac07820SSatish Balay   a->mbs        = oldmat->mbs;
32060ac07820SSatish Balay   a->nbs        = oldmat->nbs;
32070ac07820SSatish Balay   a->Mbs        = oldmat->Mbs;
32080ac07820SSatish Balay   a->Nbs        = oldmat->Nbs;
32090ac07820SSatish Balay 
32101e1e43feSBarry Smith   ierr = PetscLayoutReference(matin->rmap,&mat->rmap);CHKERRQ(ierr);
32111e1e43feSBarry Smith   ierr = PetscLayoutReference(matin->cmap,&mat->cmap);CHKERRQ(ierr);
3212899cda47SBarry Smith 
32130ac07820SSatish Balay   a->size         = oldmat->size;
32140ac07820SSatish Balay   a->rank         = oldmat->rank;
3215aef5e8e0SSatish Balay   a->donotstash   = oldmat->donotstash;
3216aef5e8e0SSatish Balay   a->roworiented  = oldmat->roworiented;
3217aef5e8e0SSatish Balay   a->rowindices   = 0;
32180ac07820SSatish Balay   a->rowvalues    = 0;
32190ac07820SSatish Balay   a->getrowactive = PETSC_FALSE;
322030793edcSSatish Balay   a->barray       = 0;
3221899cda47SBarry Smith   a->rstartbs     = oldmat->rstartbs;
3222899cda47SBarry Smith   a->rendbs       = oldmat->rendbs;
3223899cda47SBarry Smith   a->cstartbs     = oldmat->cstartbs;
3224899cda47SBarry Smith   a->cendbs       = oldmat->cendbs;
32250ac07820SSatish Balay 
3226133cdb44SSatish Balay   /* hash table stuff */
3227133cdb44SSatish Balay   a->ht           = 0;
3228133cdb44SSatish Balay   a->hd           = 0;
3229133cdb44SSatish Balay   a->ht_size      = 0;
3230133cdb44SSatish Balay   a->ht_flag      = oldmat->ht_flag;
323125fdafccSSatish Balay   a->ht_fact      = oldmat->ht_fact;
3232133cdb44SSatish Balay   a->ht_total_ct  = 0;
3233133cdb44SSatish Balay   a->ht_insert_ct = 0;
3234133cdb44SSatish Balay 
3235580bdb30SBarry Smith   ierr = PetscArraycpy(a->rangebs,oldmat->rangebs,a->size+1);CHKERRQ(ierr);
32360ac07820SSatish Balay   if (oldmat->colmap) {
3237aa482453SBarry Smith #if defined(PETSC_USE_CTABLE)
32380f5bd95cSBarry Smith     ierr = PetscTableCreateCopy(oldmat->colmap,&a->colmap);CHKERRQ(ierr);
323948e59246SSatish Balay #else
3240854ce69bSBarry Smith     ierr = PetscMalloc1(a->Nbs,&a->colmap);CHKERRQ(ierr);
32413bb1ff40SBarry Smith     ierr = PetscLogObjectMemory((PetscObject)mat,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr);
3242580bdb30SBarry Smith     ierr = PetscArraycpy(a->colmap,oldmat->colmap,a->Nbs);CHKERRQ(ierr);
324348e59246SSatish Balay #endif
32440ac07820SSatish Balay   } else a->colmap = 0;
32454beb1cfeSHong Zhang 
32460ac07820SSatish Balay   if (oldmat->garray && (len = ((Mat_SeqBAIJ*)(oldmat->B->data))->nbs)) {
3247785e854fSJed Brown     ierr = PetscMalloc1(len,&a->garray);CHKERRQ(ierr);
32483bb1ff40SBarry Smith     ierr = PetscLogObjectMemory((PetscObject)mat,len*sizeof(PetscInt));CHKERRQ(ierr);
3249580bdb30SBarry Smith     ierr = PetscArraycpy(a->garray,oldmat->garray,len);CHKERRQ(ierr);
32500ac07820SSatish Balay   } else a->garray = 0;
32510ac07820SSatish Balay 
3252ce94432eSBarry Smith   ierr = MatStashCreate_Private(PetscObjectComm((PetscObject)matin),matin->rmap->bs,&mat->bstash);CHKERRQ(ierr);
32530ac07820SSatish Balay   ierr = VecDuplicate(oldmat->lvec,&a->lvec);CHKERRQ(ierr);
32543bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->lvec);CHKERRQ(ierr);
32550ac07820SSatish Balay   ierr = VecScatterCopy(oldmat->Mvctx,&a->Mvctx);CHKERRQ(ierr);
32563bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->Mvctx);CHKERRQ(ierr);
32577fff6886SHong Zhang 
32582e8a6d31SBarry Smith   ierr    = MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr);
32593bb1ff40SBarry Smith   ierr    = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->A);CHKERRQ(ierr);
32602e8a6d31SBarry Smith   ierr    = MatDuplicate(oldmat->B,cpvalues,&a->B);CHKERRQ(ierr);
32613bb1ff40SBarry Smith   ierr    = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->B);CHKERRQ(ierr);
3262140e18c1SBarry Smith   ierr    = PetscFunctionListDuplicate(((PetscObject)matin)->qlist,&((PetscObject)mat)->qlist);CHKERRQ(ierr);
32630ac07820SSatish Balay   *newmat = mat;
32643a40ed3dSBarry Smith   PetscFunctionReturn(0);
32650ac07820SSatish Balay }
326657b952d6SSatish Balay 
3267618cc2edSLisandro Dalcin /* Used for both MPIBAIJ and MPISBAIJ matrices */
3268b51a4376SLisandro Dalcin PetscErrorCode MatLoad_MPIBAIJ_Binary(Mat mat,PetscViewer viewer)
3269b51a4376SLisandro Dalcin {
3270b51a4376SLisandro Dalcin   PetscInt       header[4],M,N,nz,bs,m,n,mbs,nbs,rows,cols,sum,i,j,k;
3271b51a4376SLisandro Dalcin   PetscInt       *rowidxs,*colidxs,rs,cs,ce;
3272b51a4376SLisandro Dalcin   PetscScalar    *matvals;
3273b51a4376SLisandro Dalcin   PetscErrorCode ierr;
3274b51a4376SLisandro Dalcin 
3275b51a4376SLisandro Dalcin   PetscFunctionBegin;
3276b51a4376SLisandro Dalcin   ierr = PetscViewerSetUp(viewer);CHKERRQ(ierr);
3277b51a4376SLisandro Dalcin 
3278b51a4376SLisandro Dalcin   /* read in matrix header */
3279b51a4376SLisandro Dalcin   ierr = PetscViewerBinaryRead(viewer,header,4,NULL,PETSC_INT);CHKERRQ(ierr);
3280b51a4376SLisandro Dalcin   if (header[0] != MAT_FILE_CLASSID) SETERRQ(PetscObjectComm((PetscObject)viewer),PETSC_ERR_FILE_UNEXPECTED,"Not a matrix object in file");
3281b51a4376SLisandro Dalcin   M  = header[1]; N = header[2]; nz = header[3];
3282b51a4376SLisandro Dalcin   if (M < 0) SETERRQ1(PetscObjectComm((PetscObject)viewer),PETSC_ERR_FILE_UNEXPECTED,"Matrix row size (%D) in file is negative",M);
3283b51a4376SLisandro Dalcin   if (N < 0) SETERRQ1(PetscObjectComm((PetscObject)viewer),PETSC_ERR_FILE_UNEXPECTED,"Matrix column size (%D) in file is negative",N);
3284b51a4376SLisandro Dalcin   if (nz < 0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"Matrix stored in special format on disk, cannot load as MPIBAIJ");
3285b51a4376SLisandro Dalcin 
3286b51a4376SLisandro Dalcin   /* set block sizes from the viewer's .info file */
3287b51a4376SLisandro Dalcin   ierr = MatLoad_Binary_BlockSizes(mat,viewer);CHKERRQ(ierr);
3288618cc2edSLisandro Dalcin   /* set local sizes if not set already */
3289618cc2edSLisandro Dalcin   if (mat->rmap->n < 0 && M == N) mat->rmap->n = mat->cmap->n;
3290618cc2edSLisandro Dalcin   if (mat->cmap->n < 0 && M == N) mat->cmap->n = mat->rmap->n;
3291b51a4376SLisandro Dalcin   /* set global sizes if not set already */
3292b51a4376SLisandro Dalcin   if (mat->rmap->N < 0) mat->rmap->N = M;
3293b51a4376SLisandro Dalcin   if (mat->cmap->N < 0) mat->cmap->N = N;
3294b51a4376SLisandro Dalcin   ierr = PetscLayoutSetUp(mat->rmap);CHKERRQ(ierr);
3295b51a4376SLisandro Dalcin   ierr = PetscLayoutSetUp(mat->cmap);CHKERRQ(ierr);
3296b51a4376SLisandro Dalcin 
3297b51a4376SLisandro Dalcin   /* check if the matrix sizes are correct */
3298b51a4376SLisandro Dalcin   ierr = MatGetSize(mat,&rows,&cols);CHKERRQ(ierr);
3299b51a4376SLisandro Dalcin   if (M != rows || N != cols) SETERRQ4(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED, "Matrix in file of different sizes (%D, %D) than the input matrix (%D, %D)",M,N,rows,cols);
3300b51a4376SLisandro Dalcin   ierr = MatGetBlockSize(mat,&bs);CHKERRQ(ierr);
3301b51a4376SLisandro Dalcin   ierr = MatGetLocalSize(mat,&m,&n);CHKERRQ(ierr);
3302b51a4376SLisandro Dalcin   ierr = PetscLayoutGetRange(mat->rmap,&rs,NULL);
3303b51a4376SLisandro Dalcin   ierr = PetscLayoutGetRange(mat->cmap,&cs,&ce);
3304b51a4376SLisandro Dalcin   mbs = m/bs; nbs = n/bs;
3305b51a4376SLisandro Dalcin 
3306b51a4376SLisandro Dalcin   /* read in row lengths and build row indices */
3307b51a4376SLisandro Dalcin   ierr = PetscMalloc1(m+1,&rowidxs);CHKERRQ(ierr);
3308b51a4376SLisandro Dalcin   ierr = PetscViewerBinaryReadAll(viewer,rowidxs+1,m,PETSC_DECIDE,M,PETSC_INT);CHKERRQ(ierr);
3309b51a4376SLisandro Dalcin   rowidxs[0] = 0; for (i=0; i<m; i++) rowidxs[i+1] += rowidxs[i];
3310b51a4376SLisandro Dalcin   ierr = MPIU_Allreduce(&rowidxs[m],&sum,1,MPIU_INT,MPI_SUM,PetscObjectComm((PetscObject)viewer));CHKERRQ(ierr);
3311b51a4376SLisandro Dalcin   if (sum != nz) SETERRQ2(PetscObjectComm((PetscObject)viewer),PETSC_ERR_FILE_UNEXPECTED,"Inconsistent matrix data in file: nonzeros = %D, sum-row-lengths = %D\n",nz,sum);
3312b51a4376SLisandro Dalcin 
3313b51a4376SLisandro Dalcin   /* read in column indices and matrix values */
3314b51a4376SLisandro Dalcin   ierr = PetscMalloc2(rowidxs[m],&colidxs,rowidxs[m],&matvals);CHKERRQ(ierr);
3315b51a4376SLisandro Dalcin   ierr = PetscViewerBinaryReadAll(viewer,colidxs,rowidxs[m],PETSC_DETERMINE,PETSC_DETERMINE,PETSC_INT);CHKERRQ(ierr);
3316b51a4376SLisandro Dalcin   ierr = PetscViewerBinaryReadAll(viewer,matvals,rowidxs[m],PETSC_DETERMINE,PETSC_DETERMINE,PETSC_SCALAR);CHKERRQ(ierr);
3317b51a4376SLisandro Dalcin 
3318b51a4376SLisandro Dalcin   { /* preallocate matrix storage */
3319b51a4376SLisandro Dalcin     PetscBT    bt; /* helper bit set to count diagonal nonzeros */
3320b51a4376SLisandro Dalcin     PetscHSetI ht; /* helper hash set to count off-diagonal nonzeros */
3321618cc2edSLisandro Dalcin     PetscBool  sbaij,done;
3322b51a4376SLisandro Dalcin     PetscInt   *d_nnz,*o_nnz;
3323b51a4376SLisandro Dalcin 
3324b51a4376SLisandro Dalcin     ierr = PetscBTCreate(nbs,&bt);CHKERRQ(ierr);
3325b51a4376SLisandro Dalcin     ierr = PetscHSetICreate(&ht);CHKERRQ(ierr);
3326b51a4376SLisandro Dalcin     ierr = PetscCalloc2(mbs,&d_nnz,mbs,&o_nnz);CHKERRQ(ierr);
3327618cc2edSLisandro Dalcin     ierr = PetscObjectTypeCompare((PetscObject)mat,MATMPISBAIJ,&sbaij);CHKERRQ(ierr);
3328b51a4376SLisandro Dalcin     for (i=0; i<mbs; i++) {
3329b51a4376SLisandro Dalcin       ierr = PetscBTMemzero(nbs,bt);CHKERRQ(ierr);
3330b51a4376SLisandro Dalcin       ierr = PetscHSetIClear(ht);CHKERRQ(ierr);
3331618cc2edSLisandro Dalcin       for (k=0; k<bs; k++) {
3332618cc2edSLisandro Dalcin         PetscInt row = bs*i + k;
3333618cc2edSLisandro Dalcin         for (j=rowidxs[row]; j<rowidxs[row+1]; j++) {
3334618cc2edSLisandro Dalcin           PetscInt col = colidxs[j];
3335618cc2edSLisandro Dalcin           if (!sbaij || col >= row) {
3336618cc2edSLisandro Dalcin             if (col >= cs && col < ce) {
3337618cc2edSLisandro Dalcin               if (!PetscBTLookupSet(bt,(col-cs)/bs)) d_nnz[i]++;
3338b51a4376SLisandro Dalcin             } else {
3339618cc2edSLisandro Dalcin               ierr = PetscHSetIQueryAdd(ht,col/bs,&done);CHKERRQ(ierr);
3340b51a4376SLisandro Dalcin               if (done) o_nnz[i]++;
3341b51a4376SLisandro Dalcin             }
3342b51a4376SLisandro Dalcin           }
3343618cc2edSLisandro Dalcin         }
3344618cc2edSLisandro Dalcin       }
3345618cc2edSLisandro Dalcin     }
3346b51a4376SLisandro Dalcin     ierr = PetscBTDestroy(&bt);CHKERRQ(ierr);
3347b51a4376SLisandro Dalcin     ierr = PetscHSetIDestroy(&ht);CHKERRQ(ierr);
3348b51a4376SLisandro Dalcin     ierr = MatMPIBAIJSetPreallocation(mat,bs,0,d_nnz,0,o_nnz);CHKERRQ(ierr);
3349618cc2edSLisandro Dalcin     ierr = MatMPISBAIJSetPreallocation(mat,bs,0,d_nnz,0,o_nnz);CHKERRQ(ierr);
3350b51a4376SLisandro Dalcin     ierr = PetscFree2(d_nnz,o_nnz);CHKERRQ(ierr);
3351b51a4376SLisandro Dalcin   }
3352b51a4376SLisandro Dalcin 
3353b51a4376SLisandro Dalcin   /* store matrix values */
3354b51a4376SLisandro Dalcin   for (i=0; i<m; i++) {
3355b51a4376SLisandro Dalcin     PetscInt row = rs + i, s = rowidxs[i], e = rowidxs[i+1];
3356618cc2edSLisandro Dalcin     ierr = (*mat->ops->setvalues)(mat,1,&row,e-s,colidxs+s,matvals+s,INSERT_VALUES);CHKERRQ(ierr);
3357b51a4376SLisandro Dalcin   }
3358b51a4376SLisandro Dalcin 
3359b51a4376SLisandro Dalcin   ierr = PetscFree(rowidxs);CHKERRQ(ierr);
3360b51a4376SLisandro Dalcin   ierr = PetscFree2(colidxs,matvals);CHKERRQ(ierr);
3361b51a4376SLisandro Dalcin   ierr = MatAssemblyBegin(mat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
3362b51a4376SLisandro Dalcin   ierr = MatAssemblyEnd(mat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
3363b51a4376SLisandro Dalcin   PetscFunctionReturn(0);
3364b51a4376SLisandro Dalcin }
3365b51a4376SLisandro Dalcin 
3366b51a4376SLisandro Dalcin PetscErrorCode MatLoad_MPIBAIJ(Mat mat,PetscViewer viewer)
33674683f7a4SShri Abhyankar {
33684683f7a4SShri Abhyankar   PetscErrorCode ierr;
33697f489da9SVaclav Hapla   PetscBool      isbinary;
33704683f7a4SShri Abhyankar 
33714683f7a4SShri Abhyankar   PetscFunctionBegin;
33727f489da9SVaclav Hapla   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary);CHKERRQ(ierr);
3373b51a4376SLisandro Dalcin   if (!isbinary) SETERRQ2(PetscObjectComm((PetscObject)viewer),PETSC_ERR_SUP,"Viewer type %s not yet supported for reading %s matrices",((PetscObject)viewer)->type_name,((PetscObject)mat)->type_name);
3374b51a4376SLisandro Dalcin   ierr = MatLoad_MPIBAIJ_Binary(mat,viewer);CHKERRQ(ierr);
33754683f7a4SShri Abhyankar   PetscFunctionReturn(0);
33764683f7a4SShri Abhyankar }
33774683f7a4SShri Abhyankar 
3378133cdb44SSatish Balay /*@
3379133cdb44SSatish Balay    MatMPIBAIJSetHashTableFactor - Sets the factor required to compute the size of the HashTable.
3380133cdb44SSatish Balay 
3381133cdb44SSatish Balay    Input Parameters:
3382a2b725a8SWilliam Gropp +  mat  - the matrix
3383a2b725a8SWilliam Gropp -  fact - factor
3384133cdb44SSatish Balay 
3385c5eb9154SBarry Smith    Not Collective, each process can use a different factor
3386fee21e36SBarry Smith 
33878c890885SBarry Smith    Level: advanced
33888c890885SBarry Smith 
3389133cdb44SSatish Balay   Notes:
33908c07d4e3SBarry Smith    This can also be set by the command line option: -mat_use_hash_table <fact>
3391133cdb44SSatish Balay 
3392133cdb44SSatish Balay .seealso: MatSetOption()
3393133cdb44SSatish Balay @*/
33947087cfbeSBarry Smith PetscErrorCode  MatMPIBAIJSetHashTableFactor(Mat mat,PetscReal fact)
3395133cdb44SSatish Balay {
33964ac538c5SBarry Smith   PetscErrorCode ierr;
33975bf65638SKris Buschelman 
33985bf65638SKris Buschelman   PetscFunctionBegin;
33994ac538c5SBarry Smith   ierr = PetscTryMethod(mat,"MatSetHashTableFactor_C",(Mat,PetscReal),(mat,fact));CHKERRQ(ierr);
34005bf65638SKris Buschelman   PetscFunctionReturn(0);
34015bf65638SKris Buschelman }
34025bf65638SKris Buschelman 
34037087cfbeSBarry Smith PetscErrorCode  MatSetHashTableFactor_MPIBAIJ(Mat mat,PetscReal fact)
34045bf65638SKris Buschelman {
340525fdafccSSatish Balay   Mat_MPIBAIJ *baij;
3406133cdb44SSatish Balay 
3407133cdb44SSatish Balay   PetscFunctionBegin;
3408133cdb44SSatish Balay   baij          = (Mat_MPIBAIJ*)mat->data;
3409133cdb44SSatish Balay   baij->ht_fact = fact;
3410133cdb44SSatish Balay   PetscFunctionReturn(0);
3411133cdb44SSatish Balay }
3412f2a5309cSSatish Balay 
34139230625dSJed Brown PetscErrorCode  MatMPIBAIJGetSeqBAIJ(Mat A,Mat *Ad,Mat *Ao,const PetscInt *colmap[])
3414f2a5309cSSatish Balay {
3415f2a5309cSSatish Balay   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)A->data;
3416ab4d48faSStefano Zampini   PetscBool      flg;
3417ab4d48faSStefano Zampini   PetscErrorCode ierr;
34185fd66863SKarl Rupp 
3419f2a5309cSSatish Balay   PetscFunctionBegin;
3420ab4d48faSStefano Zampini   ierr = PetscObjectTypeCompare((PetscObject)A,MATMPIBAIJ,&flg);CHKERRQ(ierr);
3421ab4d48faSStefano Zampini   if (!flg) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_SUP,"This function requires a MATMPIBAIJ matrix as input");
342221e72a00SBarry Smith   if (Ad)     *Ad     = a->A;
342321e72a00SBarry Smith   if (Ao)     *Ao     = a->B;
342421e72a00SBarry Smith   if (colmap) *colmap = a->garray;
3425f2a5309cSSatish Balay   PetscFunctionReturn(0);
3426f2a5309cSSatish Balay }
342785535b8eSBarry Smith 
342885535b8eSBarry Smith /*
342985535b8eSBarry Smith     Special version for direct calls from Fortran (to eliminate two function call overheads
343085535b8eSBarry Smith */
343185535b8eSBarry Smith #if defined(PETSC_HAVE_FORTRAN_CAPS)
343285535b8eSBarry Smith #define matmpibaijsetvaluesblocked_ MATMPIBAIJSETVALUESBLOCKED
343385535b8eSBarry Smith #elif !defined(PETSC_HAVE_FORTRAN_UNDERSCORE)
343485535b8eSBarry Smith #define matmpibaijsetvaluesblocked_ matmpibaijsetvaluesblocked
343585535b8eSBarry Smith #endif
343685535b8eSBarry Smith 
343785535b8eSBarry Smith /*@C
343885535b8eSBarry Smith   MatMPIBAIJSetValuesBlocked - Direct Fortran call to replace call to MatSetValuesBlocked()
343985535b8eSBarry Smith 
344085535b8eSBarry Smith   Collective on Mat
344185535b8eSBarry Smith 
344285535b8eSBarry Smith   Input Parameters:
344385535b8eSBarry Smith + mat - the matrix
344485535b8eSBarry Smith . min - number of input rows
344585535b8eSBarry Smith . im - input rows
344685535b8eSBarry Smith . nin - number of input columns
344785535b8eSBarry Smith . in - input columns
344885535b8eSBarry Smith . v - numerical values input
344985535b8eSBarry Smith - addvin - INSERT_VALUES or ADD_VALUES
345085535b8eSBarry Smith 
345195452b02SPatrick Sanan   Notes:
345295452b02SPatrick Sanan     This has a complete copy of MatSetValuesBlocked_MPIBAIJ() which is terrible code un-reuse.
345385535b8eSBarry Smith 
345485535b8eSBarry Smith   Level: advanced
345585535b8eSBarry Smith 
345685535b8eSBarry Smith .seealso:   MatSetValuesBlocked()
345785535b8eSBarry Smith @*/
345885535b8eSBarry Smith PetscErrorCode matmpibaijsetvaluesblocked_(Mat *matin,PetscInt *min,const PetscInt im[],PetscInt *nin,const PetscInt in[],const MatScalar v[],InsertMode *addvin)
345985535b8eSBarry Smith {
346085535b8eSBarry Smith   /* convert input arguments to C version */
346185535b8eSBarry Smith   Mat        mat  = *matin;
346285535b8eSBarry Smith   PetscInt   m    = *min, n = *nin;
346385535b8eSBarry Smith   InsertMode addv = *addvin;
346485535b8eSBarry Smith 
346585535b8eSBarry Smith   Mat_MPIBAIJ     *baij = (Mat_MPIBAIJ*)mat->data;
346685535b8eSBarry Smith   const MatScalar *value;
346785535b8eSBarry Smith   MatScalar       *barray     = baij->barray;
3468ace3abfcSBarry Smith   PetscBool       roworiented = baij->roworiented;
346985535b8eSBarry Smith   PetscErrorCode  ierr;
347085535b8eSBarry Smith   PetscInt        i,j,ii,jj,row,col,rstart=baij->rstartbs;
347185535b8eSBarry Smith   PetscInt        rend=baij->rendbs,cstart=baij->cstartbs,stepval;
3472d0f46423SBarry Smith   PetscInt        cend=baij->cendbs,bs=mat->rmap->bs,bs2=baij->bs2;
347385535b8eSBarry Smith 
347485535b8eSBarry Smith   PetscFunctionBegin;
347585535b8eSBarry Smith   /* tasks normally handled by MatSetValuesBlocked() */
347626fbe8dcSKarl Rupp   if (mat->insertmode == NOT_SET_VALUES) mat->insertmode = addv;
347776bd3646SJed Brown   else if (PetscUnlikely(mat->insertmode != addv)) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Cannot mix add values and insert values");
347876bd3646SJed Brown   if (PetscUnlikely(mat->factortype)) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Not for factored matrix");
347985535b8eSBarry Smith   if (mat->assembled) {
348085535b8eSBarry Smith     mat->was_assembled = PETSC_TRUE;
348185535b8eSBarry Smith     mat->assembled     = PETSC_FALSE;
348285535b8eSBarry Smith   }
348385535b8eSBarry Smith   ierr = PetscLogEventBegin(MAT_SetValues,mat,0,0,0);CHKERRQ(ierr);
348485535b8eSBarry Smith 
348585535b8eSBarry Smith 
348685535b8eSBarry Smith   if (!barray) {
3487785e854fSJed Brown     ierr         = PetscMalloc1(bs2,&barray);CHKERRQ(ierr);
348885535b8eSBarry Smith     baij->barray = barray;
348985535b8eSBarry Smith   }
349085535b8eSBarry Smith 
349126fbe8dcSKarl Rupp   if (roworiented) stepval = (n-1)*bs;
349226fbe8dcSKarl Rupp   else stepval = (m-1)*bs;
349326fbe8dcSKarl Rupp 
349485535b8eSBarry Smith   for (i=0; i<m; i++) {
349585535b8eSBarry Smith     if (im[i] < 0) continue;
3496cf9c20a2SJed Brown     if (PetscUnlikelyDebug(im[i] >= baij->Mbs)) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large, row %D max %D",im[i],baij->Mbs-1);
349785535b8eSBarry Smith     if (im[i] >= rstart && im[i] < rend) {
349885535b8eSBarry Smith       row = im[i] - rstart;
349985535b8eSBarry Smith       for (j=0; j<n; j++) {
350085535b8eSBarry Smith         /* If NumCol = 1 then a copy is not required */
350185535b8eSBarry Smith         if ((roworiented) && (n == 1)) {
350285535b8eSBarry Smith           barray = (MatScalar*)v + i*bs2;
350385535b8eSBarry Smith         } else if ((!roworiented) && (m == 1)) {
350485535b8eSBarry Smith           barray = (MatScalar*)v + j*bs2;
350585535b8eSBarry Smith         } else { /* Here a copy is required */
350685535b8eSBarry Smith           if (roworiented) {
350785535b8eSBarry Smith             value = v + i*(stepval+bs)*bs + j*bs;
350885535b8eSBarry Smith           } else {
350985535b8eSBarry Smith             value = v + j*(stepval+bs)*bs + i*bs;
351085535b8eSBarry Smith           }
351185535b8eSBarry Smith           for (ii=0; ii<bs; ii++,value+=stepval) {
351285535b8eSBarry Smith             for (jj=0; jj<bs; jj++) {
351385535b8eSBarry Smith               *barray++ = *value++;
351485535b8eSBarry Smith             }
351585535b8eSBarry Smith           }
351685535b8eSBarry Smith           barray -=bs2;
351785535b8eSBarry Smith         }
351885535b8eSBarry Smith 
351985535b8eSBarry Smith         if (in[j] >= cstart && in[j] < cend) {
352085535b8eSBarry Smith           col  = in[j] - cstart;
35218ab52850SBarry Smith           ierr = MatSetValuesBlocked_SeqBAIJ_Inlined(baij->A,row,col,barray,addv,im[i],in[j]);CHKERRQ(ierr);
352226fbe8dcSKarl Rupp         } else if (in[j] < 0) continue;
3523cf9c20a2SJed Brown         else if (PetscUnlikelyDebug(in[j] >= baij->Nbs)) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large, col %D max %D",in[j],baij->Nbs-1);
352485535b8eSBarry Smith         else {
352585535b8eSBarry Smith           if (mat->was_assembled) {
352685535b8eSBarry Smith             if (!baij->colmap) {
3527ab9863d7SBarry Smith               ierr = MatCreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
352885535b8eSBarry Smith             }
352985535b8eSBarry Smith 
353085535b8eSBarry Smith #if defined(PETSC_USE_DEBUG)
353185535b8eSBarry Smith #if defined(PETSC_USE_CTABLE)
353285535b8eSBarry Smith             { PetscInt data;
353385535b8eSBarry Smith               ierr = PetscTableFind(baij->colmap,in[j]+1,&data);CHKERRQ(ierr);
3534e32f2f54SBarry Smith               if ((data - 1) % bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap");
353585535b8eSBarry Smith             }
353685535b8eSBarry Smith #else
3537e32f2f54SBarry Smith             if ((baij->colmap[in[j]] - 1) % bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap");
353885535b8eSBarry Smith #endif
353985535b8eSBarry Smith #endif
354085535b8eSBarry Smith #if defined(PETSC_USE_CTABLE)
354185535b8eSBarry Smith             ierr = PetscTableFind(baij->colmap,in[j]+1,&col);CHKERRQ(ierr);
354285535b8eSBarry Smith             col  = (col - 1)/bs;
354385535b8eSBarry Smith #else
354485535b8eSBarry Smith             col = (baij->colmap[in[j]] - 1)/bs;
354585535b8eSBarry Smith #endif
354685535b8eSBarry Smith             if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) {
3547ab9863d7SBarry Smith               ierr = MatDisAssemble_MPIBAIJ(mat);CHKERRQ(ierr);
354885535b8eSBarry Smith               col  =  in[j];
354985535b8eSBarry Smith             }
355026fbe8dcSKarl Rupp           } else col = in[j];
35518ab52850SBarry Smith           ierr = MatSetValuesBlocked_SeqBAIJ_Inlined(baij->B,row,col,barray,addv,im[i],in[j]);CHKERRQ(ierr);
355285535b8eSBarry Smith         }
355385535b8eSBarry Smith       }
355485535b8eSBarry Smith     } else {
355585535b8eSBarry Smith       if (!baij->donotstash) {
355685535b8eSBarry Smith         if (roworiented) {
355785535b8eSBarry Smith           ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
355885535b8eSBarry Smith         } else {
355985535b8eSBarry Smith           ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
356085535b8eSBarry Smith         }
356185535b8eSBarry Smith       }
356285535b8eSBarry Smith     }
356385535b8eSBarry Smith   }
356485535b8eSBarry Smith 
356585535b8eSBarry Smith   /* task normally handled by MatSetValuesBlocked() */
356685535b8eSBarry Smith   ierr = PetscLogEventEnd(MAT_SetValues,mat,0,0,0);CHKERRQ(ierr);
356785535b8eSBarry Smith   PetscFunctionReturn(0);
356885535b8eSBarry Smith }
3569dfb205c3SBarry Smith 
3570dfb205c3SBarry Smith /*@
3571483a2f95SBarry Smith      MatCreateMPIBAIJWithArrays - creates a MPI BAIJ matrix using arrays that contain in standard block
3572dfb205c3SBarry Smith          CSR format the local rows.
3573dfb205c3SBarry Smith 
3574d083f849SBarry Smith    Collective
3575dfb205c3SBarry Smith 
3576dfb205c3SBarry Smith    Input Parameters:
3577dfb205c3SBarry Smith +  comm - MPI communicator
3578dfb205c3SBarry Smith .  bs - the block size, only a block size of 1 is supported
3579dfb205c3SBarry Smith .  m - number of local rows (Cannot be PETSC_DECIDE)
3580dfb205c3SBarry Smith .  n - This value should be the same as the local size used in creating the
3581dfb205c3SBarry Smith        x vector for the matrix-vector product y = Ax. (or PETSC_DECIDE to have
3582dfb205c3SBarry Smith        calculated if N is given) For square matrices n is almost always m.
3583dfb205c3SBarry Smith .  M - number of global rows (or PETSC_DETERMINE to have calculated if m is given)
3584dfb205c3SBarry Smith .  N - number of global columns (or PETSC_DETERMINE to have calculated if n is given)
3585483a2f95SBarry Smith .   i - row indices; that is i[0] = 0, i[row] = i[row-1] + number of block elements in that rowth block row of the matrix
3586dfb205c3SBarry Smith .   j - column indices
3587dfb205c3SBarry Smith -   a - matrix values
3588dfb205c3SBarry Smith 
3589dfb205c3SBarry Smith    Output Parameter:
3590dfb205c3SBarry Smith .   mat - the matrix
3591dfb205c3SBarry Smith 
3592dfb205c3SBarry Smith    Level: intermediate
3593dfb205c3SBarry Smith 
3594dfb205c3SBarry Smith    Notes:
3595dfb205c3SBarry Smith        The i, j, and a arrays ARE copied by this routine into the internal format used by PETSc;
3596dfb205c3SBarry Smith      thus you CANNOT change the matrix entries by changing the values of a[] after you have
3597dfb205c3SBarry Smith      called this routine. Use MatCreateMPIAIJWithSplitArrays() to avoid needing to copy the arrays.
3598dfb205c3SBarry Smith 
35993adadaf3SJed Brown      The order of the entries in values is the same as the block compressed sparse row storage format; that is, it is
36003adadaf3SJed Brown      the same as a three dimensional array in Fortran values(bs,bs,nnz) that contains the first column of the first
36013adadaf3SJed Brown      block, followed by the second column of the first block etc etc.  That is, the blocks are contiguous in memory
36023adadaf3SJed Brown      with column-major ordering within blocks.
36033adadaf3SJed Brown 
3604dfb205c3SBarry Smith        The i and j indices are 0 based, and i indices are indices corresponding to the local j array.
3605dfb205c3SBarry Smith 
3606dfb205c3SBarry Smith .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatMPIAIJSetPreallocation(), MatMPIAIJSetPreallocationCSR(),
360769b1f4b7SBarry Smith           MPIAIJ, MatCreateAIJ(), MatCreateMPIAIJWithSplitArrays()
3608dfb205c3SBarry Smith @*/
36097087cfbeSBarry Smith PetscErrorCode  MatCreateMPIBAIJWithArrays(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,const PetscInt i[],const PetscInt j[],const PetscScalar a[],Mat *mat)
3610dfb205c3SBarry Smith {
3611dfb205c3SBarry Smith   PetscErrorCode ierr;
3612dfb205c3SBarry Smith 
3613dfb205c3SBarry Smith   PetscFunctionBegin;
3614f23aa3ddSBarry Smith   if (i[0]) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"i (row indices) must start with 0");
3615dfb205c3SBarry Smith   if (m < 0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"local number of rows (m) cannot be PETSC_DECIDE, or negative");
3616dfb205c3SBarry Smith   ierr = MatCreate(comm,mat);CHKERRQ(ierr);
3617dfb205c3SBarry Smith   ierr = MatSetSizes(*mat,m,n,M,N);CHKERRQ(ierr);
36189a43d2d5SJed Brown   ierr = MatSetType(*mat,MATMPIBAIJ);CHKERRQ(ierr);
361927f91139SJed Brown   ierr = MatSetBlockSize(*mat,bs);CHKERRQ(ierr);
362027f91139SJed Brown   ierr = MatSetUp(*mat);CHKERRQ(ierr);
3621d47bf9aaSJed Brown   ierr = MatSetOption(*mat,MAT_ROW_ORIENTED,PETSC_FALSE);CHKERRQ(ierr);
3622dfb205c3SBarry Smith   ierr = MatMPIBAIJSetPreallocationCSR(*mat,bs,i,j,a);CHKERRQ(ierr);
3623d47bf9aaSJed Brown   ierr = MatSetOption(*mat,MAT_ROW_ORIENTED,PETSC_TRUE);CHKERRQ(ierr);
3624dfb205c3SBarry Smith   PetscFunctionReturn(0);
3625dfb205c3SBarry Smith }
3626e561ad89SHong Zhang 
3627bd153df0SHong Zhang PetscErrorCode MatCreateMPIMatConcatenateSeqMat_MPIBAIJ(MPI_Comm comm,Mat inmat,PetscInt n,MatReuse scall,Mat *outmat)
3628e561ad89SHong Zhang {
3629e561ad89SHong Zhang   PetscErrorCode ierr;
3630bd153df0SHong Zhang   PetscInt       m,N,i,rstart,nnz,Ii,bs,cbs;
3631bd153df0SHong Zhang   PetscInt       *indx;
3632bd153df0SHong Zhang   PetscScalar    *values;
3633e561ad89SHong Zhang 
3634e561ad89SHong Zhang   PetscFunctionBegin;
3635e561ad89SHong Zhang   ierr = MatGetSize(inmat,&m,&N);CHKERRQ(ierr);
3636bd153df0SHong Zhang   if (scall == MAT_INITIAL_MATRIX) { /* symbolic phase */
3637bd153df0SHong Zhang     Mat_SeqBAIJ    *a = (Mat_SeqBAIJ*)inmat->data;
36382c6ba4edSHong Zhang     PetscInt       *dnz,*onz,mbs,Nbs,nbs;
3639bd153df0SHong Zhang     PetscInt       *bindx,rmax=a->rmax,j;
364077f764caSHong Zhang     PetscMPIInt    rank,size;
3641e561ad89SHong Zhang 
3642bd153df0SHong Zhang     ierr = MatGetBlockSizes(inmat,&bs,&cbs);CHKERRQ(ierr);
3643bd153df0SHong Zhang     mbs = m/bs; Nbs = N/cbs;
3644bd153df0SHong Zhang     if (n == PETSC_DECIDE) {
3645da91a574SPierre Jolivet       ierr = PetscSplitOwnershipBlock(comm,cbs,&n,&N);
3646bd153df0SHong Zhang     }
3647da91a574SPierre Jolivet     nbs = n/cbs;
3648e561ad89SHong Zhang 
3649647a6520SHong Zhang     ierr = PetscMalloc1(rmax,&bindx);CHKERRQ(ierr);
365077f764caSHong Zhang     ierr = MatPreallocateInitialize(comm,mbs,nbs,dnz,onz);CHKERRQ(ierr); /* inline function, output __end and __rstart are used below */
365177f764caSHong Zhang 
365277f764caSHong Zhang     ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr);
365377f764caSHong Zhang     ierr = MPI_Comm_rank(comm,&size);CHKERRQ(ierr);
365477f764caSHong Zhang     if (rank == size-1) {
365577f764caSHong Zhang       /* Check sum(nbs) = Nbs */
36562c6ba4edSHong Zhang       if (__end != Nbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"Sum of local block columns %D != global block columns %D",__end,Nbs);
365777f764caSHong Zhang     }
365877f764caSHong Zhang 
365977f764caSHong Zhang     rstart = __rstart; /* block rstart of *outmat; see inline function MatPreallocateInitialize */
3660bd153df0SHong Zhang     for (i=0; i<mbs; i++) {
3661647a6520SHong Zhang       ierr = MatGetRow_SeqBAIJ(inmat,i*bs,&nnz,&indx,NULL);CHKERRQ(ierr); /* non-blocked nnz and indx */
3662647a6520SHong Zhang       nnz = nnz/bs;
3663647a6520SHong Zhang       for (j=0; j<nnz; j++) bindx[j] = indx[j*bs]/bs;
3664647a6520SHong Zhang       ierr = MatPreallocateSet(i+rstart,nnz,bindx,dnz,onz);CHKERRQ(ierr);
3665647a6520SHong Zhang       ierr = MatRestoreRow_SeqBAIJ(inmat,i*bs,&nnz,&indx,NULL);CHKERRQ(ierr);
3666e561ad89SHong Zhang     }
3667647a6520SHong Zhang     ierr = PetscFree(bindx);CHKERRQ(ierr);
3668e561ad89SHong Zhang 
3669e561ad89SHong Zhang     ierr = MatCreate(comm,outmat);CHKERRQ(ierr);
367077f764caSHong Zhang     ierr = MatSetSizes(*outmat,m,n,PETSC_DETERMINE,PETSC_DETERMINE);CHKERRQ(ierr);
3671e561ad89SHong Zhang     ierr = MatSetBlockSizes(*outmat,bs,cbs);CHKERRQ(ierr);
36728761c3d6SHong Zhang     ierr = MatSetType(*outmat,MATBAIJ);CHKERRQ(ierr);
36738761c3d6SHong Zhang     ierr = MatSeqBAIJSetPreallocation(*outmat,bs,0,dnz);CHKERRQ(ierr);
3674e561ad89SHong Zhang     ierr = MatMPIBAIJSetPreallocation(*outmat,bs,0,dnz,0,onz);CHKERRQ(ierr);
3675e561ad89SHong Zhang     ierr = MatPreallocateFinalize(dnz,onz);CHKERRQ(ierr);
3676e561ad89SHong Zhang   }
3677e561ad89SHong Zhang 
3678bd153df0SHong Zhang   /* numeric phase */
3679647a6520SHong Zhang   ierr = MatGetBlockSizes(inmat,&bs,&cbs);CHKERRQ(ierr);
3680bd153df0SHong Zhang   ierr = MatGetOwnershipRange(*outmat,&rstart,NULL);CHKERRQ(ierr);
3681e561ad89SHong Zhang 
3682e561ad89SHong Zhang   for (i=0; i<m; i++) {
3683e561ad89SHong Zhang     ierr = MatGetRow_SeqBAIJ(inmat,i,&nnz,&indx,&values);CHKERRQ(ierr);
3684e561ad89SHong Zhang     Ii   = i + rstart;
3685bd153df0SHong Zhang     ierr = MatSetValues(*outmat,1,&Ii,nnz,indx,values,INSERT_VALUES);CHKERRQ(ierr);
3686e561ad89SHong Zhang     ierr = MatRestoreRow_SeqBAIJ(inmat,i,&nnz,&indx,&values);CHKERRQ(ierr);
3687e561ad89SHong Zhang   }
3688bd153df0SHong Zhang   ierr = MatAssemblyBegin(*outmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
3689bd153df0SHong Zhang   ierr = MatAssemblyEnd(*outmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
3690e561ad89SHong Zhang   PetscFunctionReturn(0);
3691e561ad89SHong Zhang }
3692