1c6db04a5SJed Brown #include <../src/mat/impls/baij/mpi/mpibaij.h> /*I "petscmat.h" I*/ 2c5d9258eSSatish Balay 3b51a4376SLisandro Dalcin #include <petsc/private/hashseti.h> 4c6db04a5SJed Brown #include <petscblaslapack.h> 565a92638SMatthew G. Knepley #include <petscsf.h> 679bdfe76SSatish Balay 77ea3e4caSstefano_zampini #if defined(PETSC_HAVE_HYPRE) 87ea3e4caSstefano_zampini PETSC_INTERN PetscErrorCode MatConvert_AIJ_HYPRE(Mat,MatType,MatReuse,Mat*); 97ea3e4caSstefano_zampini #endif 107ea3e4caSstefano_zampini 11985db425SBarry Smith PetscErrorCode MatGetRowMaxAbs_MPIBAIJ(Mat A,Vec v,PetscInt idx[]) 127843d17aSBarry Smith { 137843d17aSBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 14dfbe8321SBarry Smith PetscErrorCode ierr; 15985db425SBarry Smith PetscInt i,*idxb = 0; 1687828ca2SBarry Smith PetscScalar *va,*vb; 177843d17aSBarry Smith Vec vtmp; 187843d17aSBarry Smith 197843d17aSBarry Smith PetscFunctionBegin; 20985db425SBarry Smith ierr = MatGetRowMaxAbs(a->A,v,idx);CHKERRQ(ierr); 211ebc52fbSHong Zhang ierr = VecGetArray(v,&va);CHKERRQ(ierr); 22985db425SBarry Smith if (idx) { 2326fbe8dcSKarl Rupp for (i=0; i<A->rmap->n; i++) { 2426fbe8dcSKarl Rupp if (PetscAbsScalar(va[i])) idx[i] += A->cmap->rstart; 2526fbe8dcSKarl Rupp } 26985db425SBarry Smith } 277843d17aSBarry Smith 28d0f46423SBarry Smith ierr = VecCreateSeq(PETSC_COMM_SELF,A->rmap->n,&vtmp);CHKERRQ(ierr); 29785e854fSJed Brown if (idx) {ierr = PetscMalloc1(A->rmap->n,&idxb);CHKERRQ(ierr);} 30985db425SBarry Smith ierr = MatGetRowMaxAbs(a->B,vtmp,idxb);CHKERRQ(ierr); 311ebc52fbSHong Zhang ierr = VecGetArray(vtmp,&vb);CHKERRQ(ierr); 327843d17aSBarry Smith 33d0f46423SBarry Smith for (i=0; i<A->rmap->n; i++) { 3426fbe8dcSKarl Rupp if (PetscAbsScalar(va[i]) < PetscAbsScalar(vb[i])) { 3526fbe8dcSKarl Rupp va[i] = vb[i]; 3626fbe8dcSKarl Rupp if (idx) idx[i] = A->cmap->bs*a->garray[idxb[i]/A->cmap->bs] + (idxb[i] % A->cmap->bs); 3726fbe8dcSKarl Rupp } 387843d17aSBarry Smith } 397843d17aSBarry Smith 401ebc52fbSHong Zhang ierr = VecRestoreArray(v,&va);CHKERRQ(ierr); 411ebc52fbSHong Zhang ierr = VecRestoreArray(vtmp,&vb);CHKERRQ(ierr); 42c31cb41cSBarry Smith ierr = PetscFree(idxb);CHKERRQ(ierr); 436bf464f9SBarry Smith ierr = VecDestroy(&vtmp);CHKERRQ(ierr); 447843d17aSBarry Smith PetscFunctionReturn(0); 457843d17aSBarry Smith } 467843d17aSBarry Smith 477087cfbeSBarry Smith PetscErrorCode MatStoreValues_MPIBAIJ(Mat mat) 487fc3c18eSBarry Smith { 497fc3c18eSBarry Smith Mat_MPIBAIJ *aij = (Mat_MPIBAIJ*)mat->data; 50dfbe8321SBarry Smith PetscErrorCode ierr; 517fc3c18eSBarry Smith 527fc3c18eSBarry Smith PetscFunctionBegin; 537fc3c18eSBarry Smith ierr = MatStoreValues(aij->A);CHKERRQ(ierr); 547fc3c18eSBarry Smith ierr = MatStoreValues(aij->B);CHKERRQ(ierr); 557fc3c18eSBarry Smith PetscFunctionReturn(0); 567fc3c18eSBarry Smith } 577fc3c18eSBarry Smith 587087cfbeSBarry Smith PetscErrorCode MatRetrieveValues_MPIBAIJ(Mat mat) 597fc3c18eSBarry Smith { 607fc3c18eSBarry Smith Mat_MPIBAIJ *aij = (Mat_MPIBAIJ*)mat->data; 61dfbe8321SBarry Smith PetscErrorCode ierr; 627fc3c18eSBarry Smith 637fc3c18eSBarry Smith PetscFunctionBegin; 647fc3c18eSBarry Smith ierr = MatRetrieveValues(aij->A);CHKERRQ(ierr); 657fc3c18eSBarry Smith ierr = MatRetrieveValues(aij->B);CHKERRQ(ierr); 667fc3c18eSBarry Smith PetscFunctionReturn(0); 677fc3c18eSBarry Smith } 687fc3c18eSBarry Smith 69537820f0SBarry Smith /* 70537820f0SBarry Smith Local utility routine that creates a mapping from the global column 7157b952d6SSatish Balay number to the local number in the off-diagonal part of the local 72e06f6af7SJed Brown storage of the matrix. This is done in a non scalable way since the 7357b952d6SSatish Balay length of colmap equals the global matrix length. 7457b952d6SSatish Balay */ 75ab9863d7SBarry Smith PetscErrorCode MatCreateColmap_MPIBAIJ_Private(Mat mat) 7657b952d6SSatish Balay { 7757b952d6SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 7857b952d6SSatish Balay Mat_SeqBAIJ *B = (Mat_SeqBAIJ*)baij->B->data; 796849ba73SBarry Smith PetscErrorCode ierr; 80d0f46423SBarry Smith PetscInt nbs = B->nbs,i,bs=mat->rmap->bs; 8157b952d6SSatish Balay 82d64ed03dSBarry Smith PetscFunctionBegin; 83aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 84e23dfa41SBarry Smith ierr = PetscTableCreate(baij->nbs,baij->Nbs+1,&baij->colmap);CHKERRQ(ierr); 8548e59246SSatish Balay for (i=0; i<nbs; i++) { 863861aac3SJed Brown ierr = PetscTableAdd(baij->colmap,baij->garray[i]+1,i*bs+1,INSERT_VALUES);CHKERRQ(ierr); 8748e59246SSatish Balay } 8848e59246SSatish Balay #else 89580bdb30SBarry Smith ierr = PetscCalloc1(baij->Nbs+1,&baij->colmap);CHKERRQ(ierr); 903bb1ff40SBarry Smith ierr = PetscLogObjectMemory((PetscObject)mat,baij->Nbs*sizeof(PetscInt));CHKERRQ(ierr); 91928fc39bSSatish Balay for (i=0; i<nbs; i++) baij->colmap[baij->garray[i]] = i*bs+1; 9248e59246SSatish Balay #endif 933a40ed3dSBarry Smith PetscFunctionReturn(0); 9457b952d6SSatish Balay } 9557b952d6SSatish Balay 96d40312a9SBarry Smith #define MatSetValues_SeqBAIJ_A_Private(row,col,value,addv,orow,ocol) \ 9780c1aa95SSatish Balay { \ 9880c1aa95SSatish Balay brow = row/bs; \ 9980c1aa95SSatish Balay rp = aj + ai[brow]; ap = aa + bs2*ai[brow]; \ 100ac7a638eSSatish Balay rmax = aimax[brow]; nrow = ailen[brow]; \ 10180c1aa95SSatish Balay bcol = col/bs; \ 10280c1aa95SSatish Balay ridx = row % bs; cidx = col % bs; \ 103ab26458aSBarry Smith low = 0; high = nrow; \ 104ab26458aSBarry Smith while (high-low > 3) { \ 105ab26458aSBarry Smith t = (low+high)/2; \ 106ab26458aSBarry Smith if (rp[t] > bcol) high = t; \ 107ab26458aSBarry Smith else low = t; \ 108ab26458aSBarry Smith } \ 109ab26458aSBarry Smith for (_i=low; _i<high; _i++) { \ 11080c1aa95SSatish Balay if (rp[_i] > bcol) break; \ 11180c1aa95SSatish Balay if (rp[_i] == bcol) { \ 11280c1aa95SSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 113eada6651SSatish Balay if (addv == ADD_VALUES) *bap += value; \ 114eada6651SSatish Balay else *bap = value; \ 115ac7a638eSSatish Balay goto a_noinsert; \ 11680c1aa95SSatish Balay } \ 11780c1aa95SSatish Balay } \ 11889280ab3SLois Curfman McInnes if (a->nonew == 1) goto a_noinsert; \ 119d40312a9SBarry Smith if (a->nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero at global row/column (%D, %D) into matrix", orow, ocol); \ 120fef13f97SBarry Smith MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,brow,bcol,rmax,aa,ai,aj,rp,ap,aimax,a->nonew,MatScalar); \ 12180c1aa95SSatish Balay N = nrow++ - 1; \ 12280c1aa95SSatish Balay /* shift up all the later entries in this row */ \ 123580bdb30SBarry Smith ierr = PetscArraymove(rp+_i+1,rp+_i,N-_i+1);CHKERRQ(ierr);\ 124580bdb30SBarry Smith ierr = PetscArraymove(ap+bs2*(_i+1),ap+bs2*_i,bs2*(N-_i+1));CHKERRQ(ierr); \ 125580bdb30SBarry Smith ierr = PetscArrayzero(ap+bs2*_i,bs2);CHKERRQ(ierr); \ 12680c1aa95SSatish Balay rp[_i] = bcol; \ 12780c1aa95SSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 128ac7a638eSSatish Balay a_noinsert:; \ 12980c1aa95SSatish Balay ailen[brow] = nrow; \ 13080c1aa95SSatish Balay } 13157b952d6SSatish Balay 132d40312a9SBarry Smith #define MatSetValues_SeqBAIJ_B_Private(row,col,value,addv,orow,ocol) \ 133ac7a638eSSatish Balay { \ 134ac7a638eSSatish Balay brow = row/bs; \ 135ac7a638eSSatish Balay rp = bj + bi[brow]; ap = ba + bs2*bi[brow]; \ 136ac7a638eSSatish Balay rmax = bimax[brow]; nrow = bilen[brow]; \ 137ac7a638eSSatish Balay bcol = col/bs; \ 138ac7a638eSSatish Balay ridx = row % bs; cidx = col % bs; \ 139ac7a638eSSatish Balay low = 0; high = nrow; \ 140ac7a638eSSatish Balay while (high-low > 3) { \ 141ac7a638eSSatish Balay t = (low+high)/2; \ 142ac7a638eSSatish Balay if (rp[t] > bcol) high = t; \ 143ac7a638eSSatish Balay else low = t; \ 144ac7a638eSSatish Balay } \ 145ac7a638eSSatish Balay for (_i=low; _i<high; _i++) { \ 146ac7a638eSSatish Balay if (rp[_i] > bcol) break; \ 147ac7a638eSSatish Balay if (rp[_i] == bcol) { \ 148ac7a638eSSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 149ac7a638eSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 150ac7a638eSSatish Balay else *bap = value; \ 151ac7a638eSSatish Balay goto b_noinsert; \ 152ac7a638eSSatish Balay } \ 153ac7a638eSSatish Balay } \ 15489280ab3SLois Curfman McInnes if (b->nonew == 1) goto b_noinsert; \ 155d40312a9SBarry Smith if (b->nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero at global row/column (%D, %D) into matrix", orow, ocol); \ 156fef13f97SBarry Smith MatSeqXAIJReallocateAIJ(B,b->mbs,bs2,nrow,brow,bcol,rmax,ba,bi,bj,rp,ap,bimax,b->nonew,MatScalar); \ 157ac7a638eSSatish Balay N = nrow++ - 1; \ 158ac7a638eSSatish Balay /* shift up all the later entries in this row */ \ 159580bdb30SBarry Smith ierr = PetscArraymove(rp+_i+1,rp+_i,N-_i+1);CHKERRQ(ierr);\ 160580bdb30SBarry Smith ierr = PetscArraymove(ap+bs2*(_i+1),ap+bs2*_i,bs2*(N-_i+1));CHKERRQ(ierr);\ 161580bdb30SBarry Smith ierr = PetscArrayzero(ap+bs2*_i,bs2);CHKERRQ(ierr); \ 162ac7a638eSSatish Balay rp[_i] = bcol; \ 163ac7a638eSSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 164ac7a638eSSatish Balay b_noinsert:; \ 165ac7a638eSSatish Balay bilen[brow] = nrow; \ 166ac7a638eSSatish Balay } 167ac7a638eSSatish Balay 168b24ad042SBarry Smith PetscErrorCode MatSetValues_MPIBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv) 16957b952d6SSatish Balay { 17057b952d6SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 17193fea6afSBarry Smith MatScalar value; 172ace3abfcSBarry Smith PetscBool roworiented = baij->roworiented; 173dfbe8321SBarry Smith PetscErrorCode ierr; 174b24ad042SBarry Smith PetscInt i,j,row,col; 175d0f46423SBarry Smith PetscInt rstart_orig=mat->rmap->rstart; 176d0f46423SBarry Smith PetscInt rend_orig =mat->rmap->rend,cstart_orig=mat->cmap->rstart; 177d0f46423SBarry Smith PetscInt cend_orig =mat->cmap->rend,bs=mat->rmap->bs; 17857b952d6SSatish Balay 179eada6651SSatish Balay /* Some Variables required in the macro */ 18080c1aa95SSatish Balay Mat A = baij->A; 18180c1aa95SSatish Balay Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)(A)->data; 182b24ad042SBarry Smith PetscInt *aimax=a->imax,*ai=a->i,*ailen=a->ilen,*aj=a->j; 1833eda8832SBarry Smith MatScalar *aa =a->a; 184ac7a638eSSatish Balay 185ac7a638eSSatish Balay Mat B = baij->B; 186ac7a638eSSatish Balay Mat_SeqBAIJ *b = (Mat_SeqBAIJ*)(B)->data; 187b24ad042SBarry Smith PetscInt *bimax=b->imax,*bi=b->i,*bilen=b->ilen,*bj=b->j; 1883eda8832SBarry Smith MatScalar *ba =b->a; 189ac7a638eSSatish Balay 190b24ad042SBarry Smith PetscInt *rp,ii,nrow,_i,rmax,N,brow,bcol; 191b24ad042SBarry Smith PetscInt low,high,t,ridx,cidx,bs2=a->bs2; 1923eda8832SBarry Smith MatScalar *ap,*bap; 19380c1aa95SSatish Balay 194d64ed03dSBarry Smith PetscFunctionBegin; 19557b952d6SSatish Balay for (i=0; i<m; i++) { 1965ef9f2a5SBarry Smith if (im[i] < 0) continue; 197cf9c20a2SJed Brown if (PetscUnlikelyDebug(im[i] >= mat->rmap->N)) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],mat->rmap->N-1); 19857b952d6SSatish Balay if (im[i] >= rstart_orig && im[i] < rend_orig) { 19957b952d6SSatish Balay row = im[i] - rstart_orig; 20057b952d6SSatish Balay for (j=0; j<n; j++) { 20157b952d6SSatish Balay if (in[j] >= cstart_orig && in[j] < cend_orig) { 20257b952d6SSatish Balay col = in[j] - cstart_orig; 203db4deed7SKarl Rupp if (roworiented) value = v[i*n+j]; 204db4deed7SKarl Rupp else value = v[i+j*m]; 205d40312a9SBarry Smith MatSetValues_SeqBAIJ_A_Private(row,col,value,addv,im[i],in[j]); 20673959e64SBarry Smith } else if (in[j] < 0) continue; 207*9245e749SBarry Smith else if (PetscUnlikelyDebug(in[j] >= mat->cmap->N)) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",in[j],mat->cmap->N-1); 208*9245e749SBarry Smith else { 20957b952d6SSatish Balay if (mat->was_assembled) { 210905e6a2fSBarry Smith if (!baij->colmap) { 211ab9863d7SBarry Smith ierr = MatCreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 212905e6a2fSBarry Smith } 213aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 2140f5bd95cSBarry Smith ierr = PetscTableFind(baij->colmap,in[j]/bs + 1,&col);CHKERRQ(ierr); 215bba1ac68SSatish Balay col = col - 1; 21648e59246SSatish Balay #else 217bba1ac68SSatish Balay col = baij->colmap[in[j]/bs] - 1; 21848e59246SSatish Balay #endif 219c9ef50b2SBarry Smith if (col < 0 && !((Mat_SeqBAIJ*)(baij->B->data))->nonew) { 220ab9863d7SBarry Smith ierr = MatDisAssemble_MPIBAIJ(mat);CHKERRQ(ierr); 2218295de27SSatish Balay col = in[j]; 2229bf004c3SSatish Balay /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */ 2239bf004c3SSatish Balay B = baij->B; 2249bf004c3SSatish Balay b = (Mat_SeqBAIJ*)(B)->data; 2259bf004c3SSatish Balay bimax=b->imax;bi=b->i;bilen=b->ilen;bj=b->j; 2269bf004c3SSatish Balay ba =b->a; 227c9ef50b2SBarry Smith } else if (col < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", im[i], in[j]); 228c9ef50b2SBarry Smith else col += in[j]%bs; 2298295de27SSatish Balay } else col = in[j]; 230db4deed7SKarl Rupp if (roworiented) value = v[i*n+j]; 231db4deed7SKarl Rupp else value = v[i+j*m]; 232d40312a9SBarry Smith MatSetValues_SeqBAIJ_B_Private(row,col,value,addv,im[i],in[j]); 23390da58bdSSatish Balay /* ierr = MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 23457b952d6SSatish Balay } 23557b952d6SSatish Balay } 236d64ed03dSBarry Smith } else { 2374cb17eb5SBarry Smith if (mat->nooffprocentries) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Setting off process row %D even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set",im[i]); 23890f02eecSBarry Smith if (!baij->donotstash) { 2395080c13bSMatthew G Knepley mat->assembled = PETSC_FALSE; 240ff2fd236SBarry Smith if (roworiented) { 241b400d20cSBarry Smith ierr = MatStashValuesRow_Private(&mat->stash,im[i],n,in,v+i*n,PETSC_FALSE);CHKERRQ(ierr); 242ff2fd236SBarry Smith } else { 243b400d20cSBarry Smith ierr = MatStashValuesCol_Private(&mat->stash,im[i],n,in,v+i,m,PETSC_FALSE);CHKERRQ(ierr); 24457b952d6SSatish Balay } 24557b952d6SSatish Balay } 24657b952d6SSatish Balay } 24790f02eecSBarry Smith } 2483a40ed3dSBarry Smith PetscFunctionReturn(0); 24957b952d6SSatish Balay } 25057b952d6SSatish Balay 2518ab52850SBarry Smith PETSC_STATIC_INLINE PetscErrorCode MatSetValuesBlocked_SeqBAIJ_Inlined(Mat A,PetscInt row,PetscInt col,const PetscScalar v[],InsertMode is,PetscInt orow,PetscInt ocol) 252880c6e6aSBarry Smith { 253880c6e6aSBarry Smith Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data; 2548ab52850SBarry Smith PetscInt *rp,low,high,t,ii,jj,nrow,i,rmax,N; 255880c6e6aSBarry Smith PetscInt *imax=a->imax,*ai=a->i,*ailen=a->ilen; 256880c6e6aSBarry Smith PetscErrorCode ierr; 2578ab52850SBarry Smith PetscInt *aj =a->j,nonew=a->nonew,bs2=a->bs2,bs=A->rmap->bs; 258880c6e6aSBarry Smith PetscBool roworiented=a->roworiented; 259880c6e6aSBarry Smith const PetscScalar *value = v; 260880c6e6aSBarry Smith MatScalar *ap,*aa = a->a,*bap; 261880c6e6aSBarry Smith 262880c6e6aSBarry Smith PetscFunctionBegin; 263880c6e6aSBarry Smith rp = aj + ai[row]; 264880c6e6aSBarry Smith ap = aa + bs2*ai[row]; 265880c6e6aSBarry Smith rmax = imax[row]; 266880c6e6aSBarry Smith nrow = ailen[row]; 2678ab52850SBarry Smith value = v; 2688ab52850SBarry Smith low = 0; 2698ab52850SBarry Smith high = nrow; 270880c6e6aSBarry Smith while (high-low > 7) { 271880c6e6aSBarry Smith t = (low+high)/2; 272880c6e6aSBarry Smith if (rp[t] > col) high = t; 273880c6e6aSBarry Smith else low = t; 274880c6e6aSBarry Smith } 275880c6e6aSBarry Smith for (i=low; i<high; i++) { 276880c6e6aSBarry Smith if (rp[i] > col) break; 277880c6e6aSBarry Smith if (rp[i] == col) { 278880c6e6aSBarry Smith bap = ap + bs2*i; 279880c6e6aSBarry Smith if (roworiented) { 280880c6e6aSBarry Smith if (is == ADD_VALUES) { 2818ab52850SBarry Smith for (ii=0; ii<bs; ii++) { 282880c6e6aSBarry Smith for (jj=ii; jj<bs2; jj+=bs) { 283880c6e6aSBarry Smith bap[jj] += *value++; 284880c6e6aSBarry Smith } 285880c6e6aSBarry Smith } 286880c6e6aSBarry Smith } else { 2878ab52850SBarry Smith for (ii=0; ii<bs; ii++) { 288880c6e6aSBarry Smith for (jj=ii; jj<bs2; jj+=bs) { 289880c6e6aSBarry Smith bap[jj] = *value++; 290880c6e6aSBarry Smith } 291880c6e6aSBarry Smith } 292880c6e6aSBarry Smith } 293880c6e6aSBarry Smith } else { 294880c6e6aSBarry Smith if (is == ADD_VALUES) { 2958ab52850SBarry Smith for (ii=0; ii<bs; ii++,value+=bs) { 296880c6e6aSBarry Smith for (jj=0; jj<bs; jj++) { 297880c6e6aSBarry Smith bap[jj] += value[jj]; 298880c6e6aSBarry Smith } 299880c6e6aSBarry Smith bap += bs; 300880c6e6aSBarry Smith } 301880c6e6aSBarry Smith } else { 3028ab52850SBarry Smith for (ii=0; ii<bs; ii++,value+=bs) { 303880c6e6aSBarry Smith for (jj=0; jj<bs; jj++) { 304880c6e6aSBarry Smith bap[jj] = value[jj]; 305880c6e6aSBarry Smith } 306880c6e6aSBarry Smith bap += bs; 307880c6e6aSBarry Smith } 308880c6e6aSBarry Smith } 309880c6e6aSBarry Smith } 310880c6e6aSBarry Smith goto noinsert2; 311880c6e6aSBarry Smith } 312880c6e6aSBarry Smith } 313880c6e6aSBarry Smith if (nonew == 1) goto noinsert2; 314880c6e6aSBarry Smith if (nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new global block indexed nonzero block (%D, %D) in the matrix", orow, ocol); 315880c6e6aSBarry Smith MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,row,col,rmax,aa,ai,aj,rp,ap,imax,nonew,MatScalar); 316880c6e6aSBarry Smith N = nrow++ - 1; high++; 317880c6e6aSBarry Smith /* shift up all the later entries in this row */ 318580bdb30SBarry Smith ierr = PetscArraymove(rp+i+1,rp+i,N-i+1);CHKERRQ(ierr); 319580bdb30SBarry Smith ierr = PetscArraymove(ap+bs2*(i+1),ap+bs2*i,bs2*(N-i+1));CHKERRQ(ierr); 320880c6e6aSBarry Smith rp[i] = col; 321880c6e6aSBarry Smith bap = ap + bs2*i; 322880c6e6aSBarry Smith if (roworiented) { 3238ab52850SBarry Smith for (ii=0; ii<bs; ii++) { 324880c6e6aSBarry Smith for (jj=ii; jj<bs2; jj+=bs) { 325880c6e6aSBarry Smith bap[jj] = *value++; 326880c6e6aSBarry Smith } 327880c6e6aSBarry Smith } 328880c6e6aSBarry Smith } else { 3298ab52850SBarry Smith for (ii=0; ii<bs; ii++) { 330880c6e6aSBarry Smith for (jj=0; jj<bs; jj++) { 331880c6e6aSBarry Smith *bap++ = *value++; 332880c6e6aSBarry Smith } 333880c6e6aSBarry Smith } 334880c6e6aSBarry Smith } 335880c6e6aSBarry Smith noinsert2:; 336880c6e6aSBarry Smith ailen[row] = nrow; 337880c6e6aSBarry Smith PetscFunctionReturn(0); 338880c6e6aSBarry Smith } 339880c6e6aSBarry Smith 3408ab52850SBarry Smith /* 3418ab52850SBarry Smith This routine should be optimized so that the block copy at ** Here a copy is required ** below is not needed 3428ab52850SBarry Smith by passing additional stride information into the MatSetValuesBlocked_SeqBAIJ_Inlined() routine 3438ab52850SBarry Smith */ 34497e5c40aSBarry Smith PetscErrorCode MatSetValuesBlocked_MPIBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv) 345ab26458aSBarry Smith { 346ab26458aSBarry Smith Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 347dd6ea824SBarry Smith const PetscScalar *value; 348f15d580aSBarry Smith MatScalar *barray = baij->barray; 349ace3abfcSBarry Smith PetscBool roworiented = baij->roworiented; 350dfbe8321SBarry Smith PetscErrorCode ierr; 351899cda47SBarry Smith PetscInt i,j,ii,jj,row,col,rstart=baij->rstartbs; 352899cda47SBarry Smith PetscInt rend=baij->rendbs,cstart=baij->cstartbs,stepval; 353d0f46423SBarry Smith PetscInt cend=baij->cendbs,bs=mat->rmap->bs,bs2=baij->bs2; 354ab26458aSBarry Smith 355b16ae2b1SBarry Smith PetscFunctionBegin; 35630793edcSSatish Balay if (!barray) { 357785e854fSJed Brown ierr = PetscMalloc1(bs2,&barray);CHKERRQ(ierr); 35882502324SSatish Balay baij->barray = barray; 35930793edcSSatish Balay } 36030793edcSSatish Balay 36126fbe8dcSKarl Rupp if (roworiented) stepval = (n-1)*bs; 36226fbe8dcSKarl Rupp else stepval = (m-1)*bs; 36326fbe8dcSKarl Rupp 364ab26458aSBarry Smith for (i=0; i<m; i++) { 3655ef9f2a5SBarry Smith if (im[i] < 0) continue; 366cf9c20a2SJed Brown if (PetscUnlikelyDebug(im[i] >= baij->Mbs)) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Block indexed row too large %D max %D",im[i],baij->Mbs-1); 367ab26458aSBarry Smith if (im[i] >= rstart && im[i] < rend) { 368ab26458aSBarry Smith row = im[i] - rstart; 369ab26458aSBarry Smith for (j=0; j<n; j++) { 37015b57d14SSatish Balay /* If NumCol = 1 then a copy is not required */ 37115b57d14SSatish Balay if ((roworiented) && (n == 1)) { 372f15d580aSBarry Smith barray = (MatScalar*)v + i*bs2; 37315b57d14SSatish Balay } else if ((!roworiented) && (m == 1)) { 374f15d580aSBarry Smith barray = (MatScalar*)v + j*bs2; 37515b57d14SSatish Balay } else { /* Here a copy is required */ 376ab26458aSBarry Smith if (roworiented) { 37753ef36baSBarry Smith value = v + (i*(stepval+bs) + j)*bs; 378ab26458aSBarry Smith } else { 37953ef36baSBarry Smith value = v + (j*(stepval+bs) + i)*bs; 380abef11f7SSatish Balay } 38153ef36baSBarry Smith for (ii=0; ii<bs; ii++,value+=bs+stepval) { 38226fbe8dcSKarl Rupp for (jj=0; jj<bs; jj++) barray[jj] = value[jj]; 38353ef36baSBarry Smith barray += bs; 38447513183SBarry Smith } 38530793edcSSatish Balay barray -= bs2; 38615b57d14SSatish Balay } 387abef11f7SSatish Balay 388abef11f7SSatish Balay if (in[j] >= cstart && in[j] < cend) { 389abef11f7SSatish Balay col = in[j] - cstart; 3908ab52850SBarry Smith ierr = MatSetValuesBlocked_SeqBAIJ_Inlined(baij->A,row,col,barray,addv,im[i],in[j]);CHKERRQ(ierr); 39126fbe8dcSKarl Rupp } else if (in[j] < 0) continue; 392*9245e749SBarry Smith else if (PetscUnlikelyDebug(in[j] >= baij->Nbs)) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Block indexed column too large %D max %D",in[j],baij->Nbs-1); 393*9245e749SBarry Smith else { 394ab26458aSBarry Smith if (mat->was_assembled) { 395ab26458aSBarry Smith if (!baij->colmap) { 396ab9863d7SBarry Smith ierr = MatCreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 397ab26458aSBarry Smith } 398a5eb4965SSatish Balay 3992515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 400aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 401b24ad042SBarry Smith { PetscInt data; 4020f5bd95cSBarry Smith ierr = PetscTableFind(baij->colmap,in[j]+1,&data);CHKERRQ(ierr); 403e32f2f54SBarry Smith if ((data - 1) % bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap"); 404fa46199cSSatish Balay } 40548e59246SSatish Balay #else 406e32f2f54SBarry Smith if ((baij->colmap[in[j]] - 1) % bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap"); 407a5eb4965SSatish Balay #endif 40848e59246SSatish Balay #endif 409aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 4100f5bd95cSBarry Smith ierr = PetscTableFind(baij->colmap,in[j]+1,&col);CHKERRQ(ierr); 411fa46199cSSatish Balay col = (col - 1)/bs; 41248e59246SSatish Balay #else 413a5eb4965SSatish Balay col = (baij->colmap[in[j]] - 1)/bs; 41448e59246SSatish Balay #endif 4150e9bae81SBarry Smith if (col < 0 && !((Mat_SeqBAIJ*)(baij->B->data))->nonew) { 416ab9863d7SBarry Smith ierr = MatDisAssemble_MPIBAIJ(mat);CHKERRQ(ierr); 417ab26458aSBarry Smith col = in[j]; 418bb003d0fSBarry Smith } else if (col < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new blocked indexed nonzero block (%D, %D) into matrix",im[i],in[j]); 419db4deed7SKarl Rupp } else col = in[j]; 4208ab52850SBarry Smith ierr = MatSetValuesBlocked_SeqBAIJ_Inlined(baij->B,row,col,barray,addv,im[i],in[j]);CHKERRQ(ierr); 421ab26458aSBarry Smith } 422ab26458aSBarry Smith } 423d64ed03dSBarry Smith } else { 424bb003d0fSBarry Smith if (mat->nooffprocentries) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Setting off process block indexed row %D even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set",im[i]); 425ab26458aSBarry Smith if (!baij->donotstash) { 426ff2fd236SBarry Smith if (roworiented) { 4276fa18ffdSBarry Smith ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 428ff2fd236SBarry Smith } else { 4296fa18ffdSBarry Smith ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 430ff2fd236SBarry Smith } 431abef11f7SSatish Balay } 432ab26458aSBarry Smith } 433ab26458aSBarry Smith } 4343a40ed3dSBarry Smith PetscFunctionReturn(0); 435ab26458aSBarry Smith } 4366fa18ffdSBarry Smith 4370bdbc534SSatish Balay #define HASH_KEY 0.6180339887 438b24ad042SBarry Smith #define HASH(size,key,tmp) (tmp = (key)*HASH_KEY,(PetscInt)((size)*(tmp-(PetscInt)tmp))) 439b24ad042SBarry Smith /* #define HASH(size,key) ((PetscInt)((size)*fmod(((key)*HASH_KEY),1))) */ 440b24ad042SBarry Smith /* #define HASH(size,key,tmp) ((PetscInt)((size)*fmod(((key)*HASH_KEY),1))) */ 44197e5c40aSBarry Smith PetscErrorCode MatSetValues_MPIBAIJ_HT(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv) 4420bdbc534SSatish Balay { 4430bdbc534SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 444ace3abfcSBarry Smith PetscBool roworiented = baij->roworiented; 445dfbe8321SBarry Smith PetscErrorCode ierr; 446b24ad042SBarry Smith PetscInt i,j,row,col; 447d0f46423SBarry Smith PetscInt rstart_orig=mat->rmap->rstart; 448d0f46423SBarry Smith PetscInt rend_orig =mat->rmap->rend,Nbs=baij->Nbs; 449d0f46423SBarry Smith PetscInt h1,key,size=baij->ht_size,bs=mat->rmap->bs,*HT=baij->ht,idx; 450329f5518SBarry Smith PetscReal tmp; 4513eda8832SBarry Smith MatScalar **HD = baij->hd,value; 452b24ad042SBarry Smith PetscInt total_ct=baij->ht_total_ct,insert_ct=baij->ht_insert_ct; 4530bdbc534SSatish Balay 4540bdbc534SSatish Balay PetscFunctionBegin; 4550bdbc534SSatish Balay for (i=0; i<m; i++) { 45676bd3646SJed Brown if (PetscDefined(USE_DEBUG)) { 457e32f2f54SBarry Smith if (im[i] < 0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative row"); 458e32f2f54SBarry Smith if (im[i] >= mat->rmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],mat->rmap->N-1); 45976bd3646SJed Brown } 4600bdbc534SSatish Balay row = im[i]; 461c2760754SSatish Balay if (row >= rstart_orig && row < rend_orig) { 4620bdbc534SSatish Balay for (j=0; j<n; j++) { 4630bdbc534SSatish Balay col = in[j]; 464db4deed7SKarl Rupp if (roworiented) value = v[i*n+j]; 465db4deed7SKarl Rupp else value = v[i+j*m]; 466b24ad042SBarry Smith /* Look up PetscInto the Hash Table */ 467c2760754SSatish Balay key = (row/bs)*Nbs+(col/bs)+1; 468c2760754SSatish Balay h1 = HASH(size,key,tmp); 4690bdbc534SSatish Balay 470c2760754SSatish Balay 471c2760754SSatish Balay idx = h1; 47276bd3646SJed Brown if (PetscDefined(USE_DEBUG)) { 473187ce0cbSSatish Balay insert_ct++; 474187ce0cbSSatish Balay total_ct++; 475187ce0cbSSatish Balay if (HT[idx] != key) { 476187ce0cbSSatish Balay for (idx=h1; (idx<size) && (HT[idx]!=key); idx++,total_ct++) ; 477187ce0cbSSatish Balay if (idx == size) { 478187ce0cbSSatish Balay for (idx=0; (idx<h1) && (HT[idx]!=key); idx++,total_ct++) ; 479f23aa3ddSBarry Smith if (idx == h1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"(%D,%D) has no entry in the hash table", row, col); 480187ce0cbSSatish Balay } 481187ce0cbSSatish Balay } 48276bd3646SJed Brown } else if (HT[idx] != key) { 483c2760754SSatish Balay for (idx=h1; (idx<size) && (HT[idx]!=key); idx++) ; 484c2760754SSatish Balay if (idx == size) { 485c2760754SSatish Balay for (idx=0; (idx<h1) && (HT[idx]!=key); idx++) ; 486f23aa3ddSBarry Smith if (idx == h1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"(%D,%D) has no entry in the hash table", row, col); 487c2760754SSatish Balay } 488c2760754SSatish Balay } 489c2760754SSatish Balay /* A HASH table entry is found, so insert the values at the correct address */ 490c2760754SSatish Balay if (addv == ADD_VALUES) *(HD[idx]+ (col % bs)*bs + (row % bs)) += value; 491c2760754SSatish Balay else *(HD[idx]+ (col % bs)*bs + (row % bs)) = value; 4920bdbc534SSatish Balay } 49326fbe8dcSKarl Rupp } else if (!baij->donotstash) { 494ff2fd236SBarry Smith if (roworiented) { 495b400d20cSBarry Smith ierr = MatStashValuesRow_Private(&mat->stash,im[i],n,in,v+i*n,PETSC_FALSE);CHKERRQ(ierr); 496ff2fd236SBarry Smith } else { 497b400d20cSBarry Smith ierr = MatStashValuesCol_Private(&mat->stash,im[i],n,in,v+i,m,PETSC_FALSE);CHKERRQ(ierr); 4980bdbc534SSatish Balay } 4990bdbc534SSatish Balay } 5000bdbc534SSatish Balay } 50176bd3646SJed Brown if (PetscDefined(USE_DEBUG)) { 502abf3b562SBarry Smith baij->ht_total_ct += total_ct; 503abf3b562SBarry Smith baij->ht_insert_ct += insert_ct; 50476bd3646SJed Brown } 5050bdbc534SSatish Balay PetscFunctionReturn(0); 5060bdbc534SSatish Balay } 5070bdbc534SSatish Balay 50897e5c40aSBarry Smith PetscErrorCode MatSetValuesBlocked_MPIBAIJ_HT(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv) 5090bdbc534SSatish Balay { 5100bdbc534SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 511ace3abfcSBarry Smith PetscBool roworiented = baij->roworiented; 512dfbe8321SBarry Smith PetscErrorCode ierr; 513b24ad042SBarry Smith PetscInt i,j,ii,jj,row,col; 514899cda47SBarry Smith PetscInt rstart=baij->rstartbs; 515d0f46423SBarry Smith PetscInt rend =mat->rmap->rend,stepval,bs=mat->rmap->bs,bs2=baij->bs2,nbs2=n*bs2; 516b24ad042SBarry Smith PetscInt h1,key,size=baij->ht_size,idx,*HT=baij->ht,Nbs=baij->Nbs; 517329f5518SBarry Smith PetscReal tmp; 5183eda8832SBarry Smith MatScalar **HD = baij->hd,*baij_a; 519dd6ea824SBarry Smith const PetscScalar *v_t,*value; 520b24ad042SBarry Smith PetscInt total_ct=baij->ht_total_ct,insert_ct=baij->ht_insert_ct; 5210bdbc534SSatish Balay 522d0a41580SSatish Balay PetscFunctionBegin; 52326fbe8dcSKarl Rupp if (roworiented) stepval = (n-1)*bs; 52426fbe8dcSKarl Rupp else stepval = (m-1)*bs; 52526fbe8dcSKarl Rupp 5260bdbc534SSatish Balay for (i=0; i<m; i++) { 52776bd3646SJed Brown if (PetscDefined(USE_DEBUG)) { 528e32f2f54SBarry Smith if (im[i] < 0) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %D",im[i]); 529e32f2f54SBarry Smith if (im[i] >= baij->Mbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],baij->Mbs-1); 53076bd3646SJed Brown } 5310bdbc534SSatish Balay row = im[i]; 532ab715e2cSSatish Balay v_t = v + i*nbs2; 533c2760754SSatish Balay if (row >= rstart && row < rend) { 5340bdbc534SSatish Balay for (j=0; j<n; j++) { 5350bdbc534SSatish Balay col = in[j]; 5360bdbc534SSatish Balay 5370bdbc534SSatish Balay /* Look up into the Hash Table */ 538c2760754SSatish Balay key = row*Nbs+col+1; 539c2760754SSatish Balay h1 = HASH(size,key,tmp); 5400bdbc534SSatish Balay 541c2760754SSatish Balay idx = h1; 54276bd3646SJed Brown if (PetscDefined(USE_DEBUG)) { 543187ce0cbSSatish Balay total_ct++; 544187ce0cbSSatish Balay insert_ct++; 545187ce0cbSSatish Balay if (HT[idx] != key) { 546187ce0cbSSatish Balay for (idx=h1; (idx<size) && (HT[idx]!=key); idx++,total_ct++) ; 547187ce0cbSSatish Balay if (idx == size) { 548187ce0cbSSatish Balay for (idx=0; (idx<h1) && (HT[idx]!=key); idx++,total_ct++) ; 549f23aa3ddSBarry Smith if (idx == h1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"(%D,%D) has no entry in the hash table", row, col); 550187ce0cbSSatish Balay } 551187ce0cbSSatish Balay } 55276bd3646SJed Brown } else if (HT[idx] != key) { 553c2760754SSatish Balay for (idx=h1; (idx<size) && (HT[idx]!=key); idx++) ; 554c2760754SSatish Balay if (idx == size) { 555c2760754SSatish Balay for (idx=0; (idx<h1) && (HT[idx]!=key); idx++) ; 556f23aa3ddSBarry Smith if (idx == h1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"(%D,%D) has no entry in the hash table", row, col); 557c2760754SSatish Balay } 558c2760754SSatish Balay } 559c2760754SSatish Balay baij_a = HD[idx]; 5600bdbc534SSatish Balay if (roworiented) { 561c2760754SSatish Balay /*value = v + i*(stepval+bs)*bs + j*bs;*/ 562187ce0cbSSatish Balay /* value = v + (i*(stepval+bs)+j)*bs; */ 563187ce0cbSSatish Balay value = v_t; 564187ce0cbSSatish Balay v_t += bs; 565fef45726SSatish Balay if (addv == ADD_VALUES) { 566c2760754SSatish Balay for (ii=0; ii<bs; ii++,value+=stepval) { 567c2760754SSatish Balay for (jj=ii; jj<bs2; jj+=bs) { 568fef45726SSatish Balay baij_a[jj] += *value++; 569b4cc0f5aSSatish Balay } 570b4cc0f5aSSatish Balay } 571fef45726SSatish Balay } else { 572c2760754SSatish Balay for (ii=0; ii<bs; ii++,value+=stepval) { 573c2760754SSatish Balay for (jj=ii; jj<bs2; jj+=bs) { 574fef45726SSatish Balay baij_a[jj] = *value++; 575fef45726SSatish Balay } 576fef45726SSatish Balay } 577fef45726SSatish Balay } 5780bdbc534SSatish Balay } else { 5790bdbc534SSatish Balay value = v + j*(stepval+bs)*bs + i*bs; 580fef45726SSatish Balay if (addv == ADD_VALUES) { 581b4cc0f5aSSatish Balay for (ii=0; ii<bs; ii++,value+=stepval,baij_a+=bs) { 5820bdbc534SSatish Balay for (jj=0; jj<bs; jj++) { 583fef45726SSatish Balay baij_a[jj] += *value++; 584fef45726SSatish Balay } 585fef45726SSatish Balay } 586fef45726SSatish Balay } else { 587fef45726SSatish Balay for (ii=0; ii<bs; ii++,value+=stepval,baij_a+=bs) { 588fef45726SSatish Balay for (jj=0; jj<bs; jj++) { 589fef45726SSatish Balay baij_a[jj] = *value++; 590fef45726SSatish Balay } 591b4cc0f5aSSatish Balay } 5920bdbc534SSatish Balay } 5930bdbc534SSatish Balay } 5940bdbc534SSatish Balay } 5950bdbc534SSatish Balay } else { 5960bdbc534SSatish Balay if (!baij->donotstash) { 5970bdbc534SSatish Balay if (roworiented) { 5988798bf22SSatish Balay ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 5990bdbc534SSatish Balay } else { 6008798bf22SSatish Balay ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 6010bdbc534SSatish Balay } 6020bdbc534SSatish Balay } 6030bdbc534SSatish Balay } 6040bdbc534SSatish Balay } 60576bd3646SJed Brown if (PetscDefined(USE_DEBUG)) { 606abf3b562SBarry Smith baij->ht_total_ct += total_ct; 607abf3b562SBarry Smith baij->ht_insert_ct += insert_ct; 60876bd3646SJed Brown } 6090bdbc534SSatish Balay PetscFunctionReturn(0); 6100bdbc534SSatish Balay } 611133cdb44SSatish Balay 612b24ad042SBarry Smith PetscErrorCode MatGetValues_MPIBAIJ(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[]) 613d6de1c52SSatish Balay { 614d6de1c52SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 6156849ba73SBarry Smith PetscErrorCode ierr; 616d0f46423SBarry Smith PetscInt bs = mat->rmap->bs,i,j,bsrstart = mat->rmap->rstart,bsrend = mat->rmap->rend; 617d0f46423SBarry Smith PetscInt bscstart = mat->cmap->rstart,bscend = mat->cmap->rend,row,col,data; 618d6de1c52SSatish Balay 619133cdb44SSatish Balay PetscFunctionBegin; 620d6de1c52SSatish Balay for (i=0; i<m; i++) { 621e32f2f54SBarry Smith if (idxm[i] < 0) continue; /* SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %D",idxm[i]);*/ 622e32f2f54SBarry Smith if (idxm[i] >= mat->rmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",idxm[i],mat->rmap->N-1); 623d6de1c52SSatish Balay if (idxm[i] >= bsrstart && idxm[i] < bsrend) { 624d6de1c52SSatish Balay row = idxm[i] - bsrstart; 625d6de1c52SSatish Balay for (j=0; j<n; j++) { 626e32f2f54SBarry Smith if (idxn[j] < 0) continue; /* SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative column: %D",idxn[j]); */ 627e32f2f54SBarry Smith if (idxn[j] >= mat->cmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",idxn[j],mat->cmap->N-1); 628d6de1c52SSatish Balay if (idxn[j] >= bscstart && idxn[j] < bscend) { 629d6de1c52SSatish Balay col = idxn[j] - bscstart; 63098dd23e9SBarry Smith ierr = MatGetValues_SeqBAIJ(baij->A,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr); 631d64ed03dSBarry Smith } else { 632905e6a2fSBarry Smith if (!baij->colmap) { 633ab9863d7SBarry Smith ierr = MatCreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 634905e6a2fSBarry Smith } 635aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 6360f5bd95cSBarry Smith ierr = PetscTableFind(baij->colmap,idxn[j]/bs+1,&data);CHKERRQ(ierr); 637fa46199cSSatish Balay data--; 63848e59246SSatish Balay #else 63948e59246SSatish Balay data = baij->colmap[idxn[j]/bs]-1; 64048e59246SSatish Balay #endif 64148e59246SSatish Balay if ((data < 0) || (baij->garray[data/bs] != idxn[j]/bs)) *(v+i*n+j) = 0.0; 642d9d09a02SSatish Balay else { 64348e59246SSatish Balay col = data + idxn[j]%bs; 64498dd23e9SBarry Smith ierr = MatGetValues_SeqBAIJ(baij->B,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr); 645d6de1c52SSatish Balay } 646d6de1c52SSatish Balay } 647d6de1c52SSatish Balay } 648f23aa3ddSBarry Smith } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local values currently supported"); 649d6de1c52SSatish Balay } 6503a40ed3dSBarry Smith PetscFunctionReturn(0); 651d6de1c52SSatish Balay } 652d6de1c52SSatish Balay 653dfbe8321SBarry Smith PetscErrorCode MatNorm_MPIBAIJ(Mat mat,NormType type,PetscReal *nrm) 654d6de1c52SSatish Balay { 655d6de1c52SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 656d6de1c52SSatish Balay Mat_SeqBAIJ *amat = (Mat_SeqBAIJ*)baij->A->data,*bmat = (Mat_SeqBAIJ*)baij->B->data; 657dfbe8321SBarry Smith PetscErrorCode ierr; 658d0f46423SBarry Smith PetscInt i,j,bs2=baij->bs2,bs=baij->A->rmap->bs,nz,row,col; 659329f5518SBarry Smith PetscReal sum = 0.0; 6603eda8832SBarry Smith MatScalar *v; 661d6de1c52SSatish Balay 662d64ed03dSBarry Smith PetscFunctionBegin; 663d6de1c52SSatish Balay if (baij->size == 1) { 664064f8208SBarry Smith ierr = MatNorm(baij->A,type,nrm);CHKERRQ(ierr); 665d6de1c52SSatish Balay } else { 666d6de1c52SSatish Balay if (type == NORM_FROBENIUS) { 667d6de1c52SSatish Balay v = amat->a; 6688a62d963SHong Zhang nz = amat->nz*bs2; 6698a62d963SHong Zhang for (i=0; i<nz; i++) { 670329f5518SBarry Smith sum += PetscRealPart(PetscConj(*v)*(*v)); v++; 671d6de1c52SSatish Balay } 672d6de1c52SSatish Balay v = bmat->a; 6738a62d963SHong Zhang nz = bmat->nz*bs2; 6748a62d963SHong Zhang for (i=0; i<nz; i++) { 675329f5518SBarry Smith sum += PetscRealPart(PetscConj(*v)*(*v)); v++; 676d6de1c52SSatish Balay } 677b2566f29SBarry Smith ierr = MPIU_Allreduce(&sum,nrm,1,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 6788f1a2a5eSBarry Smith *nrm = PetscSqrtReal(*nrm); 6798a62d963SHong Zhang } else if (type == NORM_1) { /* max column sum */ 6808a62d963SHong Zhang PetscReal *tmp,*tmp2; 681899cda47SBarry Smith PetscInt *jj,*garray=baij->garray,cstart=baij->rstartbs; 6828f8f2f0dSBarry Smith ierr = PetscCalloc1(mat->cmap->N,&tmp);CHKERRQ(ierr); 683857a15f1SBarry Smith ierr = PetscMalloc1(mat->cmap->N,&tmp2);CHKERRQ(ierr); 6848a62d963SHong Zhang v = amat->a; jj = amat->j; 6858a62d963SHong Zhang for (i=0; i<amat->nz; i++) { 6868a62d963SHong Zhang for (j=0; j<bs; j++) { 6878a62d963SHong Zhang col = bs*(cstart + *jj) + j; /* column index */ 6888a62d963SHong Zhang for (row=0; row<bs; row++) { 6898a62d963SHong Zhang tmp[col] += PetscAbsScalar(*v); v++; 6908a62d963SHong Zhang } 6918a62d963SHong Zhang } 6928a62d963SHong Zhang jj++; 6938a62d963SHong Zhang } 6948a62d963SHong Zhang v = bmat->a; jj = bmat->j; 6958a62d963SHong Zhang for (i=0; i<bmat->nz; i++) { 6968a62d963SHong Zhang for (j=0; j<bs; j++) { 6978a62d963SHong Zhang col = bs*garray[*jj] + j; 6988a62d963SHong Zhang for (row=0; row<bs; row++) { 6998a62d963SHong Zhang tmp[col] += PetscAbsScalar(*v); v++; 7008a62d963SHong Zhang } 7018a62d963SHong Zhang } 7028a62d963SHong Zhang jj++; 7038a62d963SHong Zhang } 704b2566f29SBarry Smith ierr = MPIU_Allreduce(tmp,tmp2,mat->cmap->N,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 7058a62d963SHong Zhang *nrm = 0.0; 706d0f46423SBarry Smith for (j=0; j<mat->cmap->N; j++) { 7078a62d963SHong Zhang if (tmp2[j] > *nrm) *nrm = tmp2[j]; 7088a62d963SHong Zhang } 709857a15f1SBarry Smith ierr = PetscFree(tmp);CHKERRQ(ierr); 710857a15f1SBarry Smith ierr = PetscFree(tmp2);CHKERRQ(ierr); 7118a62d963SHong Zhang } else if (type == NORM_INFINITY) { /* max row sum */ 712577dd1f9SKris Buschelman PetscReal *sums; 713785e854fSJed Brown ierr = PetscMalloc1(bs,&sums);CHKERRQ(ierr); 7148a62d963SHong Zhang sum = 0.0; 7158a62d963SHong Zhang for (j=0; j<amat->mbs; j++) { 7168a62d963SHong Zhang for (row=0; row<bs; row++) sums[row] = 0.0; 7178a62d963SHong Zhang v = amat->a + bs2*amat->i[j]; 7188a62d963SHong Zhang nz = amat->i[j+1]-amat->i[j]; 7198a62d963SHong Zhang for (i=0; i<nz; i++) { 7208a62d963SHong Zhang for (col=0; col<bs; col++) { 7218a62d963SHong Zhang for (row=0; row<bs; row++) { 7228a62d963SHong Zhang sums[row] += PetscAbsScalar(*v); v++; 7238a62d963SHong Zhang } 7248a62d963SHong Zhang } 7258a62d963SHong Zhang } 7268a62d963SHong Zhang v = bmat->a + bs2*bmat->i[j]; 7278a62d963SHong Zhang nz = bmat->i[j+1]-bmat->i[j]; 7288a62d963SHong Zhang for (i=0; i<nz; i++) { 7298a62d963SHong Zhang for (col=0; col<bs; col++) { 7308a62d963SHong Zhang for (row=0; row<bs; row++) { 7318a62d963SHong Zhang sums[row] += PetscAbsScalar(*v); v++; 7328a62d963SHong Zhang } 7338a62d963SHong Zhang } 7348a62d963SHong Zhang } 7358a62d963SHong Zhang for (row=0; row<bs; row++) { 7368a62d963SHong Zhang if (sums[row] > sum) sum = sums[row]; 7378a62d963SHong Zhang } 7388a62d963SHong Zhang } 739b2566f29SBarry Smith ierr = MPIU_Allreduce(&sum,nrm,1,MPIU_REAL,MPIU_MAX,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 740577dd1f9SKris Buschelman ierr = PetscFree(sums);CHKERRQ(ierr); 741ce94432eSBarry Smith } else SETERRQ(PetscObjectComm((PetscObject)mat),PETSC_ERR_SUP,"No support for this norm yet"); 742d64ed03dSBarry Smith } 7433a40ed3dSBarry Smith PetscFunctionReturn(0); 744d6de1c52SSatish Balay } 74557b952d6SSatish Balay 746fef45726SSatish Balay /* 747fef45726SSatish Balay Creates the hash table, and sets the table 748fef45726SSatish Balay This table is created only once. 749fef45726SSatish Balay If new entried need to be added to the matrix 750fef45726SSatish Balay then the hash table has to be destroyed and 751fef45726SSatish Balay recreated. 752fef45726SSatish Balay */ 753dfbe8321SBarry Smith PetscErrorCode MatCreateHashTable_MPIBAIJ_Private(Mat mat,PetscReal factor) 754596b8d2eSBarry Smith { 755596b8d2eSBarry Smith Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 756596b8d2eSBarry Smith Mat A = baij->A,B=baij->B; 757596b8d2eSBarry Smith Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data,*b=(Mat_SeqBAIJ*)B->data; 758b24ad042SBarry Smith PetscInt i,j,k,nz=a->nz+b->nz,h1,*ai=a->i,*aj=a->j,*bi=b->i,*bj=b->j; 7596849ba73SBarry Smith PetscErrorCode ierr; 760fca92195SBarry Smith PetscInt ht_size,bs2=baij->bs2,rstart=baij->rstartbs; 761899cda47SBarry Smith PetscInt cstart=baij->cstartbs,*garray=baij->garray,row,col,Nbs=baij->Nbs; 762b24ad042SBarry Smith PetscInt *HT,key; 7633eda8832SBarry Smith MatScalar **HD; 764329f5518SBarry Smith PetscReal tmp; 7656cf91177SBarry Smith #if defined(PETSC_USE_INFO) 766b24ad042SBarry Smith PetscInt ct=0,max=0; 7674a15367fSSatish Balay #endif 768fef45726SSatish Balay 769d64ed03dSBarry Smith PetscFunctionBegin; 770fca92195SBarry Smith if (baij->ht) PetscFunctionReturn(0); 771fef45726SSatish Balay 772fca92195SBarry Smith baij->ht_size = (PetscInt)(factor*nz); 773fca92195SBarry Smith ht_size = baij->ht_size; 7740bdbc534SSatish Balay 775fef45726SSatish Balay /* Allocate Memory for Hash Table */ 7761795a4d1SJed Brown ierr = PetscCalloc2(ht_size,&baij->hd,ht_size,&baij->ht);CHKERRQ(ierr); 777b9e4cc15SSatish Balay HD = baij->hd; 778a07cd24cSSatish Balay HT = baij->ht; 779b9e4cc15SSatish Balay 780596b8d2eSBarry Smith /* Loop Over A */ 7810bdbc534SSatish Balay for (i=0; i<a->mbs; i++) { 782596b8d2eSBarry Smith for (j=ai[i]; j<ai[i+1]; j++) { 7830bdbc534SSatish Balay row = i+rstart; 7840bdbc534SSatish Balay col = aj[j]+cstart; 785596b8d2eSBarry Smith 786187ce0cbSSatish Balay key = row*Nbs + col + 1; 787fca92195SBarry Smith h1 = HASH(ht_size,key,tmp); 788fca92195SBarry Smith for (k=0; k<ht_size; k++) { 789fca92195SBarry Smith if (!HT[(h1+k)%ht_size]) { 790fca92195SBarry Smith HT[(h1+k)%ht_size] = key; 791fca92195SBarry Smith HD[(h1+k)%ht_size] = a->a + j*bs2; 792596b8d2eSBarry Smith break; 7936cf91177SBarry Smith #if defined(PETSC_USE_INFO) 794187ce0cbSSatish Balay } else { 795187ce0cbSSatish Balay ct++; 796187ce0cbSSatish Balay #endif 797596b8d2eSBarry Smith } 798187ce0cbSSatish Balay } 7996cf91177SBarry Smith #if defined(PETSC_USE_INFO) 800187ce0cbSSatish Balay if (k> max) max = k; 801187ce0cbSSatish Balay #endif 802596b8d2eSBarry Smith } 803596b8d2eSBarry Smith } 804596b8d2eSBarry Smith /* Loop Over B */ 8050bdbc534SSatish Balay for (i=0; i<b->mbs; i++) { 806596b8d2eSBarry Smith for (j=bi[i]; j<bi[i+1]; j++) { 8070bdbc534SSatish Balay row = i+rstart; 8080bdbc534SSatish Balay col = garray[bj[j]]; 809187ce0cbSSatish Balay key = row*Nbs + col + 1; 810fca92195SBarry Smith h1 = HASH(ht_size,key,tmp); 811fca92195SBarry Smith for (k=0; k<ht_size; k++) { 812fca92195SBarry Smith if (!HT[(h1+k)%ht_size]) { 813fca92195SBarry Smith HT[(h1+k)%ht_size] = key; 814fca92195SBarry Smith HD[(h1+k)%ht_size] = b->a + j*bs2; 815596b8d2eSBarry Smith break; 8166cf91177SBarry Smith #if defined(PETSC_USE_INFO) 817187ce0cbSSatish Balay } else { 818187ce0cbSSatish Balay ct++; 819187ce0cbSSatish Balay #endif 820596b8d2eSBarry Smith } 821187ce0cbSSatish Balay } 8226cf91177SBarry Smith #if defined(PETSC_USE_INFO) 823187ce0cbSSatish Balay if (k> max) max = k; 824187ce0cbSSatish Balay #endif 825596b8d2eSBarry Smith } 826596b8d2eSBarry Smith } 827596b8d2eSBarry Smith 828596b8d2eSBarry Smith /* Print Summary */ 8296cf91177SBarry Smith #if defined(PETSC_USE_INFO) 830fca92195SBarry Smith for (i=0,j=0; i<ht_size; i++) { 83126fbe8dcSKarl Rupp if (HT[i]) j++; 832c38d4ed2SBarry Smith } 8331e2582c4SBarry Smith ierr = PetscInfo2(mat,"Average Search = %5.2f,max search = %D\n",(!j)? 0.0:((PetscReal)(ct+j))/j,max);CHKERRQ(ierr); 834187ce0cbSSatish Balay #endif 8353a40ed3dSBarry Smith PetscFunctionReturn(0); 836596b8d2eSBarry Smith } 83757b952d6SSatish Balay 838dfbe8321SBarry Smith PetscErrorCode MatAssemblyBegin_MPIBAIJ(Mat mat,MatAssemblyType mode) 839bbb85fb3SSatish Balay { 840bbb85fb3SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 841dfbe8321SBarry Smith PetscErrorCode ierr; 842b24ad042SBarry Smith PetscInt nstash,reallocs; 843bbb85fb3SSatish Balay 844bbb85fb3SSatish Balay PetscFunctionBegin; 84526fbe8dcSKarl Rupp if (baij->donotstash || mat->nooffprocentries) PetscFunctionReturn(0); 846bbb85fb3SSatish Balay 847d0f46423SBarry Smith ierr = MatStashScatterBegin_Private(mat,&mat->stash,mat->rmap->range);CHKERRQ(ierr); 8481e2582c4SBarry Smith ierr = MatStashScatterBegin_Private(mat,&mat->bstash,baij->rangebs);CHKERRQ(ierr); 8498798bf22SSatish Balay ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr); 8501e2582c4SBarry Smith ierr = PetscInfo2(mat,"Stash has %D entries,uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr); 85146680499SSatish Balay ierr = MatStashGetInfo_Private(&mat->bstash,&nstash,&reallocs);CHKERRQ(ierr); 8521e2582c4SBarry Smith ierr = PetscInfo2(mat,"Block-Stash has %D entries, uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr); 853bbb85fb3SSatish Balay PetscFunctionReturn(0); 854bbb85fb3SSatish Balay } 855bbb85fb3SSatish Balay 856dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_MPIBAIJ(Mat mat,MatAssemblyType mode) 857bbb85fb3SSatish Balay { 858bbb85fb3SSatish Balay Mat_MPIBAIJ *baij=(Mat_MPIBAIJ*)mat->data; 85991c97fd4SSatish Balay Mat_SeqBAIJ *a =(Mat_SeqBAIJ*)baij->A->data; 8606849ba73SBarry Smith PetscErrorCode ierr; 861b24ad042SBarry Smith PetscInt i,j,rstart,ncols,flg,bs2=baij->bs2; 862e44c0bd4SBarry Smith PetscInt *row,*col; 863ace3abfcSBarry Smith PetscBool r1,r2,r3,other_disassembled; 8643eda8832SBarry Smith MatScalar *val; 865b24ad042SBarry Smith PetscMPIInt n; 866bbb85fb3SSatish Balay 867bbb85fb3SSatish Balay PetscFunctionBegin; 8685fd66863SKarl Rupp /* do not use 'b=(Mat_SeqBAIJ*)baij->B->data' as B can be reset in disassembly */ 8694cb17eb5SBarry Smith if (!baij->donotstash && !mat->nooffprocentries) { 870a2d1c673SSatish Balay while (1) { 8718798bf22SSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 872a2d1c673SSatish Balay if (!flg) break; 873a2d1c673SSatish Balay 874bbb85fb3SSatish Balay for (i=0; i<n;) { 875bbb85fb3SSatish Balay /* Now identify the consecutive vals belonging to the same row */ 87626fbe8dcSKarl Rupp for (j=i,rstart=row[j]; j<n; j++) { 87726fbe8dcSKarl Rupp if (row[j] != rstart) break; 87826fbe8dcSKarl Rupp } 879bbb85fb3SSatish Balay if (j < n) ncols = j-i; 880bbb85fb3SSatish Balay else ncols = n-i; 881bbb85fb3SSatish Balay /* Now assemble all these values with a single function call */ 8824b4eb8d3SJed Brown ierr = MatSetValues_MPIBAIJ(mat,1,row+i,ncols,col+i,val+i,mat->insertmode);CHKERRQ(ierr); 883bbb85fb3SSatish Balay i = j; 884bbb85fb3SSatish Balay } 885bbb85fb3SSatish Balay } 8868798bf22SSatish Balay ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr); 887a2d1c673SSatish Balay /* Now process the block-stash. Since the values are stashed column-oriented, 888a2d1c673SSatish Balay set the roworiented flag to column oriented, and after MatSetValues() 889a2d1c673SSatish Balay restore the original flags */ 890a2d1c673SSatish Balay r1 = baij->roworiented; 891a2d1c673SSatish Balay r2 = a->roworiented; 89291c97fd4SSatish Balay r3 = ((Mat_SeqBAIJ*)baij->B->data)->roworiented; 89326fbe8dcSKarl Rupp 8947c922b88SBarry Smith baij->roworiented = PETSC_FALSE; 8957c922b88SBarry Smith a->roworiented = PETSC_FALSE; 89626fbe8dcSKarl Rupp 89791c97fd4SSatish Balay (((Mat_SeqBAIJ*)baij->B->data))->roworiented = PETSC_FALSE; /* b->roworiented */ 898a2d1c673SSatish Balay while (1) { 8998798bf22SSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->bstash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 900a2d1c673SSatish Balay if (!flg) break; 901a2d1c673SSatish Balay 902a2d1c673SSatish Balay for (i=0; i<n;) { 903a2d1c673SSatish Balay /* Now identify the consecutive vals belonging to the same row */ 90426fbe8dcSKarl Rupp for (j=i,rstart=row[j]; j<n; j++) { 90526fbe8dcSKarl Rupp if (row[j] != rstart) break; 90626fbe8dcSKarl Rupp } 907a2d1c673SSatish Balay if (j < n) ncols = j-i; 908a2d1c673SSatish Balay else ncols = n-i; 9094b4eb8d3SJed Brown ierr = MatSetValuesBlocked_MPIBAIJ(mat,1,row+i,ncols,col+i,val+i*bs2,mat->insertmode);CHKERRQ(ierr); 910a2d1c673SSatish Balay i = j; 911a2d1c673SSatish Balay } 912a2d1c673SSatish Balay } 9138798bf22SSatish Balay ierr = MatStashScatterEnd_Private(&mat->bstash);CHKERRQ(ierr); 91426fbe8dcSKarl Rupp 915a2d1c673SSatish Balay baij->roworiented = r1; 916a2d1c673SSatish Balay a->roworiented = r2; 91726fbe8dcSKarl Rupp 91891c97fd4SSatish Balay ((Mat_SeqBAIJ*)baij->B->data)->roworiented = r3; /* b->roworiented */ 919bbb85fb3SSatish Balay } 920bbb85fb3SSatish Balay 921bbb85fb3SSatish Balay ierr = MatAssemblyBegin(baij->A,mode);CHKERRQ(ierr); 922bbb85fb3SSatish Balay ierr = MatAssemblyEnd(baij->A,mode);CHKERRQ(ierr); 923bbb85fb3SSatish Balay 924bbb85fb3SSatish Balay /* determine if any processor has disassembled, if so we must 925bbb85fb3SSatish Balay also disassemble ourselfs, in order that we may reassemble. */ 926bbb85fb3SSatish Balay /* 927bbb85fb3SSatish Balay if nonzero structure of submatrix B cannot change then we know that 928bbb85fb3SSatish Balay no processor disassembled thus we can skip this stuff 929bbb85fb3SSatish Balay */ 930bbb85fb3SSatish Balay if (!((Mat_SeqBAIJ*)baij->B->data)->nonew) { 931b2566f29SBarry Smith ierr = MPIU_Allreduce(&mat->was_assembled,&other_disassembled,1,MPIU_BOOL,MPI_PROD,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 932bbb85fb3SSatish Balay if (mat->was_assembled && !other_disassembled) { 933ab9863d7SBarry Smith ierr = MatDisAssemble_MPIBAIJ(mat);CHKERRQ(ierr); 934bbb85fb3SSatish Balay } 935bbb85fb3SSatish Balay } 936bbb85fb3SSatish Balay 937bbb85fb3SSatish Balay if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) { 938bbb85fb3SSatish Balay ierr = MatSetUpMultiply_MPIBAIJ(mat);CHKERRQ(ierr); 939bbb85fb3SSatish Balay } 940bbb85fb3SSatish Balay ierr = MatAssemblyBegin(baij->B,mode);CHKERRQ(ierr); 941bbb85fb3SSatish Balay ierr = MatAssemblyEnd(baij->B,mode);CHKERRQ(ierr); 942bbb85fb3SSatish Balay 9436cf91177SBarry Smith #if defined(PETSC_USE_INFO) 944bbb85fb3SSatish Balay if (baij->ht && mode== MAT_FINAL_ASSEMBLY) { 945abf3b562SBarry Smith ierr = PetscInfo1(mat,"Average Hash Table Search in MatSetValues = %5.2f\n",(double)((PetscReal)baij->ht_total_ct)/baij->ht_insert_ct);CHKERRQ(ierr); 94626fbe8dcSKarl Rupp 947bbb85fb3SSatish Balay baij->ht_total_ct = 0; 948bbb85fb3SSatish Balay baij->ht_insert_ct = 0; 949bbb85fb3SSatish Balay } 950bbb85fb3SSatish Balay #endif 951bbb85fb3SSatish Balay if (baij->ht_flag && !baij->ht && mode == MAT_FINAL_ASSEMBLY) { 952bbb85fb3SSatish Balay ierr = MatCreateHashTable_MPIBAIJ_Private(mat,baij->ht_fact);CHKERRQ(ierr); 95326fbe8dcSKarl Rupp 954bbb85fb3SSatish Balay mat->ops->setvalues = MatSetValues_MPIBAIJ_HT; 955bbb85fb3SSatish Balay mat->ops->setvaluesblocked = MatSetValuesBlocked_MPIBAIJ_HT; 956bbb85fb3SSatish Balay } 957bbb85fb3SSatish Balay 958fca92195SBarry Smith ierr = PetscFree2(baij->rowvalues,baij->rowindices);CHKERRQ(ierr); 95926fbe8dcSKarl Rupp 960606d414cSSatish Balay baij->rowvalues = 0; 9614f9cfa9eSBarry Smith 9624f9cfa9eSBarry Smith /* if no new nonzero locations are allowed in matrix then only set the matrix state the first time through */ 9634f9cfa9eSBarry Smith if ((!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) || !((Mat_SeqBAIJ*)(baij->A->data))->nonew) { 964e56f5c9eSBarry Smith PetscObjectState state = baij->A->nonzerostate + baij->B->nonzerostate; 965b2566f29SBarry Smith ierr = MPIU_Allreduce(&state,&mat->nonzerostate,1,MPIU_INT64,MPI_SUM,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 966e56f5c9eSBarry Smith } 967bbb85fb3SSatish Balay PetscFunctionReturn(0); 968bbb85fb3SSatish Balay } 96957b952d6SSatish Balay 9707da1fb6eSBarry Smith extern PetscErrorCode MatView_SeqBAIJ(Mat,PetscViewer); 9719804daf3SBarry Smith #include <petscdraw.h> 9726849ba73SBarry Smith static PetscErrorCode MatView_MPIBAIJ_ASCIIorDraworSocket(Mat mat,PetscViewer viewer) 97357b952d6SSatish Balay { 97457b952d6SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 975dfbe8321SBarry Smith PetscErrorCode ierr; 9767da1fb6eSBarry Smith PetscMPIInt rank = baij->rank; 977d0f46423SBarry Smith PetscInt bs = mat->rmap->bs; 978ace3abfcSBarry Smith PetscBool iascii,isdraw; 979b0a32e0cSBarry Smith PetscViewer sviewer; 980f3ef73ceSBarry Smith PetscViewerFormat format; 98157b952d6SSatish Balay 982d64ed03dSBarry Smith PetscFunctionBegin; 983251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr); 984251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr); 98532077d6dSBarry Smith if (iascii) { 986b0a32e0cSBarry Smith ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr); 987456192e2SBarry Smith if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 9884e220ebcSLois Curfman McInnes MatInfo info; 989ce94432eSBarry Smith ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)mat),&rank);CHKERRQ(ierr); 990d41123aaSBarry Smith ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr); 9911575c14dSBarry Smith ierr = PetscViewerASCIIPushSynchronized(viewer);CHKERRQ(ierr); 992b1e9c6f1SBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Local rows %D nz %D nz alloced %D bs %D mem %g\n", 993b1e9c6f1SBarry Smith rank,mat->rmap->n,(PetscInt)info.nz_used,(PetscInt)info.nz_allocated,mat->rmap->bs,(double)info.memory);CHKERRQ(ierr); 994d132466eSBarry Smith ierr = MatGetInfo(baij->A,MAT_LOCAL,&info);CHKERRQ(ierr); 995e6dd01d4SJed Brown ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] on-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used);CHKERRQ(ierr); 996d132466eSBarry Smith ierr = MatGetInfo(baij->B,MAT_LOCAL,&info);CHKERRQ(ierr); 997e6dd01d4SJed Brown ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] off-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used);CHKERRQ(ierr); 998b0a32e0cSBarry Smith ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 9991575c14dSBarry Smith ierr = PetscViewerASCIIPopSynchronized(viewer);CHKERRQ(ierr); 100007d81ca4SBarry Smith ierr = PetscViewerASCIIPrintf(viewer,"Information on VecScatter used in matrix-vector product: \n");CHKERRQ(ierr); 100157b952d6SSatish Balay ierr = VecScatterView(baij->Mvctx,viewer);CHKERRQ(ierr); 10023a40ed3dSBarry Smith PetscFunctionReturn(0); 1003fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_INFO) { 100477431f27SBarry Smith ierr = PetscViewerASCIIPrintf(viewer," block size is %D\n",bs);CHKERRQ(ierr); 10053a40ed3dSBarry Smith PetscFunctionReturn(0); 100604929863SHong Zhang } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) { 100704929863SHong Zhang PetscFunctionReturn(0); 100857b952d6SSatish Balay } 100957b952d6SSatish Balay } 101057b952d6SSatish Balay 10110f5bd95cSBarry Smith if (isdraw) { 1012b0a32e0cSBarry Smith PetscDraw draw; 1013ace3abfcSBarry Smith PetscBool isnull; 1014b0a32e0cSBarry Smith ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr); 101545f3bb6eSLisandro Dalcin ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); 101645f3bb6eSLisandro Dalcin if (isnull) PetscFunctionReturn(0); 101757b952d6SSatish Balay } 101857b952d6SSatish Balay 10197da1fb6eSBarry Smith { 102057b952d6SSatish Balay /* assemble the entire matrix onto first processor. */ 102157b952d6SSatish Balay Mat A; 102257b952d6SSatish Balay Mat_SeqBAIJ *Aloc; 1023d0f46423SBarry Smith PetscInt M = mat->rmap->N,N = mat->cmap->N,*ai,*aj,col,i,j,k,*rvals,mbs = baij->mbs; 10243eda8832SBarry Smith MatScalar *a; 10253e219373SBarry Smith const char *matname; 102657b952d6SSatish Balay 1027f204ca49SKris Buschelman /* Here we are creating a temporary matrix, so will assume MPIBAIJ is acceptable */ 1028f204ca49SKris Buschelman /* Perhaps this should be the type of mat? */ 1029ce94432eSBarry Smith ierr = MatCreate(PetscObjectComm((PetscObject)mat),&A);CHKERRQ(ierr); 103057b952d6SSatish Balay if (!rank) { 1031f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,M,N,M,N);CHKERRQ(ierr); 1032d64ed03dSBarry Smith } else { 1033f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,0,0,M,N);CHKERRQ(ierr); 103457b952d6SSatish Balay } 1035f204ca49SKris Buschelman ierr = MatSetType(A,MATMPIBAIJ);CHKERRQ(ierr); 10360298fd71SBarry Smith ierr = MatMPIBAIJSetPreallocation(A,mat->rmap->bs,0,NULL,0,NULL);CHKERRQ(ierr); 10372b82e772SSatish Balay ierr = MatSetOption(A,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_FALSE);CHKERRQ(ierr); 10383bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)A);CHKERRQ(ierr); 103957b952d6SSatish Balay 104057b952d6SSatish Balay /* copy over the A part */ 104157b952d6SSatish Balay Aloc = (Mat_SeqBAIJ*)baij->A->data; 104257b952d6SSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 1043785e854fSJed Brown ierr = PetscMalloc1(bs,&rvals);CHKERRQ(ierr); 104457b952d6SSatish Balay 104557b952d6SSatish Balay for (i=0; i<mbs; i++) { 1046899cda47SBarry Smith rvals[0] = bs*(baij->rstartbs + i); 104726fbe8dcSKarl Rupp for (j=1; j<bs; j++) rvals[j] = rvals[j-1] + 1; 104857b952d6SSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 1049899cda47SBarry Smith col = (baij->cstartbs+aj[j])*bs; 105057b952d6SSatish Balay for (k=0; k<bs; k++) { 105197e5c40aSBarry Smith ierr = MatSetValues_MPIBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 1052cee3aa6bSSatish Balay col++; a += bs; 105357b952d6SSatish Balay } 105457b952d6SSatish Balay } 105557b952d6SSatish Balay } 105657b952d6SSatish Balay /* copy over the B part */ 105757b952d6SSatish Balay Aloc = (Mat_SeqBAIJ*)baij->B->data; 105857b952d6SSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 105957b952d6SSatish Balay for (i=0; i<mbs; i++) { 1060899cda47SBarry Smith rvals[0] = bs*(baij->rstartbs + i); 106126fbe8dcSKarl Rupp for (j=1; j<bs; j++) rvals[j] = rvals[j-1] + 1; 106257b952d6SSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 106357b952d6SSatish Balay col = baij->garray[aj[j]]*bs; 106457b952d6SSatish Balay for (k=0; k<bs; k++) { 106597e5c40aSBarry Smith ierr = MatSetValues_MPIBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 1066cee3aa6bSSatish Balay col++; a += bs; 106757b952d6SSatish Balay } 106857b952d6SSatish Balay } 106957b952d6SSatish Balay } 1070606d414cSSatish Balay ierr = PetscFree(rvals);CHKERRQ(ierr); 10716d4a8577SBarry Smith ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 10726d4a8577SBarry Smith ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 107355843e3eSBarry Smith /* 107455843e3eSBarry Smith Everyone has to call to draw the matrix since the graphics waits are 1075b0a32e0cSBarry Smith synchronized across all processors that share the PetscDraw object 107655843e3eSBarry Smith */ 10773f08860eSBarry Smith ierr = PetscViewerGetSubViewer(viewer,PETSC_COMM_SELF,&sviewer);CHKERRQ(ierr); 1078ade3a672SBarry Smith ierr = PetscObjectGetName((PetscObject)mat,&matname);CHKERRQ(ierr); 10793e219373SBarry Smith if (!rank) { 1080ade3a672SBarry Smith ierr = PetscObjectSetName((PetscObject)((Mat_MPIBAIJ*)(A->data))->A,matname);CHKERRQ(ierr); 10817da1fb6eSBarry Smith ierr = MatView_SeqBAIJ(((Mat_MPIBAIJ*)(A->data))->A,sviewer);CHKERRQ(ierr); 108257b952d6SSatish Balay } 10833f08860eSBarry Smith ierr = PetscViewerRestoreSubViewer(viewer,PETSC_COMM_SELF,&sviewer);CHKERRQ(ierr); 10841575c14dSBarry Smith ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 10856bf464f9SBarry Smith ierr = MatDestroy(&A);CHKERRQ(ierr); 108657b952d6SSatish Balay } 10873a40ed3dSBarry Smith PetscFunctionReturn(0); 108857b952d6SSatish Balay } 108957b952d6SSatish Balay 1090618cc2edSLisandro Dalcin /* Used for both MPIBAIJ and MPISBAIJ matrices */ 1091b51a4376SLisandro Dalcin PetscErrorCode MatView_MPIBAIJ_Binary(Mat mat,PetscViewer viewer) 1092660746e0SBarry Smith { 1093b51a4376SLisandro Dalcin Mat_MPIBAIJ *aij = (Mat_MPIBAIJ*)mat->data; 1094b51a4376SLisandro Dalcin Mat_SeqBAIJ *A = (Mat_SeqBAIJ*)aij->A->data; 1095b51a4376SLisandro Dalcin Mat_SeqBAIJ *B = (Mat_SeqBAIJ*)aij->B->data; 1096b51a4376SLisandro Dalcin const PetscInt *garray = aij->garray; 1097b51a4376SLisandro Dalcin PetscInt header[4],M,N,m,rs,cs,bs,nz,cnt,i,j,ja,jb,k,l; 1098b51a4376SLisandro Dalcin PetscInt *rowlens,*colidxs; 1099b51a4376SLisandro Dalcin PetscScalar *matvals; 1100660746e0SBarry Smith PetscErrorCode ierr; 1101660746e0SBarry Smith 1102660746e0SBarry Smith PetscFunctionBegin; 1103b51a4376SLisandro Dalcin ierr = PetscViewerSetUp(viewer);CHKERRQ(ierr); 1104b51a4376SLisandro Dalcin 1105b51a4376SLisandro Dalcin M = mat->rmap->N; 1106b51a4376SLisandro Dalcin N = mat->cmap->N; 1107b51a4376SLisandro Dalcin m = mat->rmap->n; 1108b51a4376SLisandro Dalcin rs = mat->rmap->rstart; 1109b51a4376SLisandro Dalcin cs = mat->cmap->rstart; 1110b51a4376SLisandro Dalcin bs = mat->rmap->bs; 1111b51a4376SLisandro Dalcin nz = bs*bs*(A->nz + B->nz); 1112b51a4376SLisandro Dalcin 1113b51a4376SLisandro Dalcin /* write matrix header */ 1114660746e0SBarry Smith header[0] = MAT_FILE_CLASSID; 1115b51a4376SLisandro Dalcin header[1] = M; header[2] = N; header[3] = nz; 1116ce94432eSBarry Smith ierr = MPI_Reduce(&nz,&header[3],1,MPIU_INT,MPI_SUM,0,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 1117b51a4376SLisandro Dalcin ierr = PetscViewerBinaryWrite(viewer,header,4,PETSC_INT);CHKERRQ(ierr); 1118660746e0SBarry Smith 1119b51a4376SLisandro Dalcin /* fill in and store row lengths */ 1120b51a4376SLisandro Dalcin ierr = PetscMalloc1(m,&rowlens);CHKERRQ(ierr); 1121b51a4376SLisandro Dalcin for (cnt=0, i=0; i<A->mbs; i++) 1122b51a4376SLisandro Dalcin for (j=0; j<bs; j++) 1123b51a4376SLisandro Dalcin rowlens[cnt++] = bs*(A->i[i+1] - A->i[i] + B->i[i+1] - B->i[i]); 1124b51a4376SLisandro Dalcin ierr = PetscViewerBinaryWriteAll(viewer,rowlens,m,rs,M,PETSC_INT);CHKERRQ(ierr); 1125b51a4376SLisandro Dalcin ierr = PetscFree(rowlens);CHKERRQ(ierr); 1126660746e0SBarry Smith 1127b51a4376SLisandro Dalcin /* fill in and store column indices */ 1128b51a4376SLisandro Dalcin ierr = PetscMalloc1(nz,&colidxs);CHKERRQ(ierr); 1129b51a4376SLisandro Dalcin for (cnt=0, i=0; i<A->mbs; i++) { 1130b51a4376SLisandro Dalcin for (k=0; k<bs; k++) { 1131b51a4376SLisandro Dalcin for (jb=B->i[i]; jb<B->i[i+1]; jb++) { 1132b51a4376SLisandro Dalcin if (garray[B->j[jb]] > cs/bs) break; 1133b51a4376SLisandro Dalcin for (l=0; l<bs; l++) 1134b51a4376SLisandro Dalcin colidxs[cnt++] = bs*garray[B->j[jb]] + l; 1135660746e0SBarry Smith } 1136b51a4376SLisandro Dalcin for (ja=A->i[i]; ja<A->i[i+1]; ja++) 1137b51a4376SLisandro Dalcin for (l=0; l<bs; l++) 1138b51a4376SLisandro Dalcin colidxs[cnt++] = bs*A->j[ja] + l + cs; 1139b51a4376SLisandro Dalcin for (; jb<B->i[i+1]; jb++) 1140b51a4376SLisandro Dalcin for (l=0; l<bs; l++) 1141b51a4376SLisandro Dalcin colidxs[cnt++] = bs*garray[B->j[jb]] + l; 1142660746e0SBarry Smith } 1143660746e0SBarry Smith } 1144660746e0SBarry Smith if (cnt != nz) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_LIB,"Internal PETSc error: cnt = %D nz = %D",cnt,nz); 1145b51a4376SLisandro Dalcin ierr = PetscViewerBinaryWriteAll(viewer,colidxs,nz,PETSC_DECIDE,PETSC_DECIDE,PETSC_INT);CHKERRQ(ierr); 1146b51a4376SLisandro Dalcin ierr = PetscFree(colidxs);CHKERRQ(ierr); 1147660746e0SBarry Smith 1148b51a4376SLisandro Dalcin /* fill in and store nonzero values */ 1149b51a4376SLisandro Dalcin ierr = PetscMalloc1(nz,&matvals);CHKERRQ(ierr); 1150b51a4376SLisandro Dalcin for (cnt=0, i=0; i<A->mbs; i++) { 1151b51a4376SLisandro Dalcin for (k=0; k<bs; k++) { 1152b51a4376SLisandro Dalcin for (jb=B->i[i]; jb<B->i[i+1]; jb++) { 1153b51a4376SLisandro Dalcin if (garray[B->j[jb]] > cs/bs) break; 1154b51a4376SLisandro Dalcin for (l=0; l<bs; l++) 1155b51a4376SLisandro Dalcin matvals[cnt++] = B->a[bs*(bs*jb + l) + k]; 1156660746e0SBarry Smith } 1157b51a4376SLisandro Dalcin for (ja=A->i[i]; ja<A->i[i+1]; ja++) 1158b51a4376SLisandro Dalcin for (l=0; l<bs; l++) 1159b51a4376SLisandro Dalcin matvals[cnt++] = A->a[bs*(bs*ja + l) + k]; 1160b51a4376SLisandro Dalcin for (; jb<B->i[i+1]; jb++) 1161b51a4376SLisandro Dalcin for (l=0; l<bs; l++) 1162d21b9a37SPierre Jolivet matvals[cnt++] = B->a[bs*(bs*jb + l) + k]; 1163660746e0SBarry Smith } 1164b51a4376SLisandro Dalcin } 1165b51a4376SLisandro Dalcin ierr = PetscViewerBinaryWriteAll(viewer,matvals,nz,PETSC_DECIDE,PETSC_DECIDE,PETSC_SCALAR);CHKERRQ(ierr); 1166b51a4376SLisandro Dalcin ierr = PetscFree(matvals);CHKERRQ(ierr); 1167660746e0SBarry Smith 1168b51a4376SLisandro Dalcin /* write block size option to the viewer's .info file */ 1169b51a4376SLisandro Dalcin ierr = MatView_Binary_BlockSizes(mat,viewer);CHKERRQ(ierr); 1170660746e0SBarry Smith PetscFunctionReturn(0); 1171660746e0SBarry Smith } 1172660746e0SBarry Smith 1173dfbe8321SBarry Smith PetscErrorCode MatView_MPIBAIJ(Mat mat,PetscViewer viewer) 117457b952d6SSatish Balay { 1175dfbe8321SBarry Smith PetscErrorCode ierr; 1176ace3abfcSBarry Smith PetscBool iascii,isdraw,issocket,isbinary; 117757b952d6SSatish Balay 1178d64ed03dSBarry Smith PetscFunctionBegin; 1179251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr); 1180251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr); 1181251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERSOCKET,&issocket);CHKERRQ(ierr); 1182251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary);CHKERRQ(ierr); 1183660746e0SBarry Smith if (iascii || isdraw || issocket) { 11847b2a1423SBarry Smith ierr = MatView_MPIBAIJ_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr); 1185660746e0SBarry Smith } else if (isbinary) { 1186660746e0SBarry Smith ierr = MatView_MPIBAIJ_Binary(mat,viewer);CHKERRQ(ierr); 118757b952d6SSatish Balay } 11883a40ed3dSBarry Smith PetscFunctionReturn(0); 118957b952d6SSatish Balay } 119057b952d6SSatish Balay 1191dfbe8321SBarry Smith PetscErrorCode MatDestroy_MPIBAIJ(Mat mat) 119279bdfe76SSatish Balay { 119379bdfe76SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 1194dfbe8321SBarry Smith PetscErrorCode ierr; 119579bdfe76SSatish Balay 1196d64ed03dSBarry Smith PetscFunctionBegin; 1197aa482453SBarry Smith #if defined(PETSC_USE_LOG) 1198d0f46423SBarry Smith PetscLogObjectState((PetscObject)mat,"Rows=%D,Cols=%D",mat->rmap->N,mat->cmap->N); 119979bdfe76SSatish Balay #endif 12008798bf22SSatish Balay ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr); 12018798bf22SSatish Balay ierr = MatStashDestroy_Private(&mat->bstash);CHKERRQ(ierr); 12026bf464f9SBarry Smith ierr = MatDestroy(&baij->A);CHKERRQ(ierr); 12036bf464f9SBarry Smith ierr = MatDestroy(&baij->B);CHKERRQ(ierr); 1204aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 12056bc0bbbfSBarry Smith ierr = PetscTableDestroy(&baij->colmap);CHKERRQ(ierr); 120648e59246SSatish Balay #else 120705b42c5fSBarry Smith ierr = PetscFree(baij->colmap);CHKERRQ(ierr); 120848e59246SSatish Balay #endif 120905b42c5fSBarry Smith ierr = PetscFree(baij->garray);CHKERRQ(ierr); 12106bf464f9SBarry Smith ierr = VecDestroy(&baij->lvec);CHKERRQ(ierr); 12116bf464f9SBarry Smith ierr = VecScatterDestroy(&baij->Mvctx);CHKERRQ(ierr); 1212fca92195SBarry Smith ierr = PetscFree2(baij->rowvalues,baij->rowindices);CHKERRQ(ierr); 121305b42c5fSBarry Smith ierr = PetscFree(baij->barray);CHKERRQ(ierr); 1214fca92195SBarry Smith ierr = PetscFree2(baij->hd,baij->ht);CHKERRQ(ierr); 1215899cda47SBarry Smith ierr = PetscFree(baij->rangebs);CHKERRQ(ierr); 1216bf0cc555SLisandro Dalcin ierr = PetscFree(mat->data);CHKERRQ(ierr); 1217901853e0SKris Buschelman 1218dbd8c25aSHong Zhang ierr = PetscObjectChangeTypeName((PetscObject)mat,0);CHKERRQ(ierr); 1219bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatStoreValues_C",NULL);CHKERRQ(ierr); 1220bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatRetrieveValues_C",NULL);CHKERRQ(ierr); 1221bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPIBAIJSetPreallocation_C",NULL);CHKERRQ(ierr); 1222bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPIBAIJSetPreallocationCSR_C",NULL);CHKERRQ(ierr); 1223bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDiagonalScaleLocal_C",NULL);CHKERRQ(ierr); 1224bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatSetHashTableFactor_C",NULL);CHKERRQ(ierr); 1225bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpibaij_mpisbaij_C",NULL);CHKERRQ(ierr); 1226bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpibaij_mpibstrm_C",NULL);CHKERRQ(ierr); 12277ea3e4caSstefano_zampini #if defined(PETSC_HAVE_HYPRE) 12287ea3e4caSstefano_zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpibaij_hypre_C",NULL);CHKERRQ(ierr); 12297ea3e4caSstefano_zampini #endif 1230c9225affSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpibaij_is_C",NULL);CHKERRQ(ierr); 12313a40ed3dSBarry Smith PetscFunctionReturn(0); 123279bdfe76SSatish Balay } 123379bdfe76SSatish Balay 1234dfbe8321SBarry Smith PetscErrorCode MatMult_MPIBAIJ(Mat A,Vec xx,Vec yy) 1235cee3aa6bSSatish Balay { 1236cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1237dfbe8321SBarry Smith PetscErrorCode ierr; 1238b24ad042SBarry Smith PetscInt nt; 1239cee3aa6bSSatish Balay 1240d64ed03dSBarry Smith PetscFunctionBegin; 1241e1311b90SBarry Smith ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr); 1242e7e72b3dSBarry Smith if (nt != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx"); 1243e1311b90SBarry Smith ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr); 1244e7e72b3dSBarry Smith if (nt != A->rmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible parition of A and yy"); 1245ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1246f830108cSBarry Smith ierr = (*a->A->ops->mult)(a->A,xx,yy);CHKERRQ(ierr); 1247ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1248f830108cSBarry Smith ierr = (*a->B->ops->multadd)(a->B,a->lvec,yy,yy);CHKERRQ(ierr); 12493a40ed3dSBarry Smith PetscFunctionReturn(0); 1250cee3aa6bSSatish Balay } 1251cee3aa6bSSatish Balay 1252dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPIBAIJ(Mat A,Vec xx,Vec yy,Vec zz) 1253cee3aa6bSSatish Balay { 1254cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1255dfbe8321SBarry Smith PetscErrorCode ierr; 1256d64ed03dSBarry Smith 1257d64ed03dSBarry Smith PetscFunctionBegin; 1258ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1259f830108cSBarry Smith ierr = (*a->A->ops->multadd)(a->A,xx,yy,zz);CHKERRQ(ierr); 1260ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1261f830108cSBarry Smith ierr = (*a->B->ops->multadd)(a->B,a->lvec,zz,zz);CHKERRQ(ierr); 12623a40ed3dSBarry Smith PetscFunctionReturn(0); 1263cee3aa6bSSatish Balay } 1264cee3aa6bSSatish Balay 1265dfbe8321SBarry Smith PetscErrorCode MatMultTranspose_MPIBAIJ(Mat A,Vec xx,Vec yy) 1266cee3aa6bSSatish Balay { 1267cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1268dfbe8321SBarry Smith PetscErrorCode ierr; 1269cee3aa6bSSatish Balay 1270d64ed03dSBarry Smith PetscFunctionBegin; 1271cee3aa6bSSatish Balay /* do nondiagonal part */ 12727c922b88SBarry Smith ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr); 1273cee3aa6bSSatish Balay /* do local part */ 12747c922b88SBarry Smith ierr = (*a->A->ops->multtranspose)(a->A,xx,yy);CHKERRQ(ierr); 1275e4a140f6SJunchao Zhang /* add partial results together */ 1276ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 1277ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 12783a40ed3dSBarry Smith PetscFunctionReturn(0); 1279cee3aa6bSSatish Balay } 1280cee3aa6bSSatish Balay 1281dfbe8321SBarry Smith PetscErrorCode MatMultTransposeAdd_MPIBAIJ(Mat A,Vec xx,Vec yy,Vec zz) 1282cee3aa6bSSatish Balay { 1283cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1284dfbe8321SBarry Smith PetscErrorCode ierr; 1285cee3aa6bSSatish Balay 1286d64ed03dSBarry Smith PetscFunctionBegin; 1287cee3aa6bSSatish Balay /* do nondiagonal part */ 12887c922b88SBarry Smith ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr); 1289cee3aa6bSSatish Balay /* do local part */ 12907c922b88SBarry Smith ierr = (*a->A->ops->multtransposeadd)(a->A,xx,yy,zz);CHKERRQ(ierr); 1291e4a140f6SJunchao Zhang /* add partial results together */ 1292e4a140f6SJunchao Zhang ierr = VecScatterBegin(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 1293ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 12943a40ed3dSBarry Smith PetscFunctionReturn(0); 1295cee3aa6bSSatish Balay } 1296cee3aa6bSSatish Balay 1297cee3aa6bSSatish Balay /* 1298cee3aa6bSSatish Balay This only works correctly for square matrices where the subblock A->A is the 1299cee3aa6bSSatish Balay diagonal block 1300cee3aa6bSSatish Balay */ 1301dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_MPIBAIJ(Mat A,Vec v) 1302cee3aa6bSSatish Balay { 1303cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1304dfbe8321SBarry Smith PetscErrorCode ierr; 1305d64ed03dSBarry Smith 1306d64ed03dSBarry Smith PetscFunctionBegin; 1307e32f2f54SBarry Smith if (A->rmap->N != A->cmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block"); 13083a40ed3dSBarry Smith ierr = MatGetDiagonal(a->A,v);CHKERRQ(ierr); 13093a40ed3dSBarry Smith PetscFunctionReturn(0); 1310cee3aa6bSSatish Balay } 1311cee3aa6bSSatish Balay 1312f4df32b1SMatthew Knepley PetscErrorCode MatScale_MPIBAIJ(Mat A,PetscScalar aa) 1313cee3aa6bSSatish Balay { 1314cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1315dfbe8321SBarry Smith PetscErrorCode ierr; 1316d64ed03dSBarry Smith 1317d64ed03dSBarry Smith PetscFunctionBegin; 1318f4df32b1SMatthew Knepley ierr = MatScale(a->A,aa);CHKERRQ(ierr); 1319f4df32b1SMatthew Knepley ierr = MatScale(a->B,aa);CHKERRQ(ierr); 13203a40ed3dSBarry Smith PetscFunctionReturn(0); 1321cee3aa6bSSatish Balay } 1322026e39d0SSatish Balay 1323b24ad042SBarry Smith PetscErrorCode MatGetRow_MPIBAIJ(Mat matin,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 1324acdf5bf4SSatish Balay { 1325acdf5bf4SSatish Balay Mat_MPIBAIJ *mat = (Mat_MPIBAIJ*)matin->data; 132687828ca2SBarry Smith PetscScalar *vworkA,*vworkB,**pvA,**pvB,*v_p; 13276849ba73SBarry Smith PetscErrorCode ierr; 1328d0f46423SBarry Smith PetscInt bs = matin->rmap->bs,bs2 = mat->bs2,i,*cworkA,*cworkB,**pcA,**pcB; 1329d0f46423SBarry Smith PetscInt nztot,nzA,nzB,lrow,brstart = matin->rmap->rstart,brend = matin->rmap->rend; 1330899cda47SBarry Smith PetscInt *cmap,*idx_p,cstart = mat->cstartbs; 1331acdf5bf4SSatish Balay 1332d64ed03dSBarry Smith PetscFunctionBegin; 1333e7e72b3dSBarry Smith if (row < brstart || row >= brend) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local rows"); 1334e32f2f54SBarry Smith if (mat->getrowactive) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Already active"); 1335acdf5bf4SSatish Balay mat->getrowactive = PETSC_TRUE; 1336acdf5bf4SSatish Balay 1337acdf5bf4SSatish Balay if (!mat->rowvalues && (idx || v)) { 1338acdf5bf4SSatish Balay /* 1339acdf5bf4SSatish Balay allocate enough space to hold information from the longest row. 1340acdf5bf4SSatish Balay */ 1341acdf5bf4SSatish Balay Mat_SeqBAIJ *Aa = (Mat_SeqBAIJ*)mat->A->data,*Ba = (Mat_SeqBAIJ*)mat->B->data; 1342b24ad042SBarry Smith PetscInt max = 1,mbs = mat->mbs,tmp; 1343bd16c2feSSatish Balay for (i=0; i<mbs; i++) { 1344acdf5bf4SSatish Balay tmp = Aa->i[i+1] - Aa->i[i] + Ba->i[i+1] - Ba->i[i]; 134526fbe8dcSKarl Rupp if (max < tmp) max = tmp; 1346acdf5bf4SSatish Balay } 1347dcca6d9dSJed Brown ierr = PetscMalloc2(max*bs2,&mat->rowvalues,max*bs2,&mat->rowindices);CHKERRQ(ierr); 1348acdf5bf4SSatish Balay } 1349d9d09a02SSatish Balay lrow = row - brstart; 1350acdf5bf4SSatish Balay 1351acdf5bf4SSatish Balay pvA = &vworkA; pcA = &cworkA; pvB = &vworkB; pcB = &cworkB; 1352acdf5bf4SSatish Balay if (!v) {pvA = 0; pvB = 0;} 1353acdf5bf4SSatish Balay if (!idx) {pcA = 0; if (!v) pcB = 0;} 1354f830108cSBarry Smith ierr = (*mat->A->ops->getrow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr); 1355f830108cSBarry Smith ierr = (*mat->B->ops->getrow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr); 1356acdf5bf4SSatish Balay nztot = nzA + nzB; 1357acdf5bf4SSatish Balay 1358acdf5bf4SSatish Balay cmap = mat->garray; 1359acdf5bf4SSatish Balay if (v || idx) { 1360acdf5bf4SSatish Balay if (nztot) { 1361acdf5bf4SSatish Balay /* Sort by increasing column numbers, assuming A and B already sorted */ 1362b24ad042SBarry Smith PetscInt imark = -1; 1363acdf5bf4SSatish Balay if (v) { 1364acdf5bf4SSatish Balay *v = v_p = mat->rowvalues; 1365acdf5bf4SSatish Balay for (i=0; i<nzB; i++) { 1366d9d09a02SSatish Balay if (cmap[cworkB[i]/bs] < cstart) v_p[i] = vworkB[i]; 1367acdf5bf4SSatish Balay else break; 1368acdf5bf4SSatish Balay } 1369acdf5bf4SSatish Balay imark = i; 1370acdf5bf4SSatish Balay for (i=0; i<nzA; i++) v_p[imark+i] = vworkA[i]; 1371acdf5bf4SSatish Balay for (i=imark; i<nzB; i++) v_p[nzA+i] = vworkB[i]; 1372acdf5bf4SSatish Balay } 1373acdf5bf4SSatish Balay if (idx) { 1374acdf5bf4SSatish Balay *idx = idx_p = mat->rowindices; 1375acdf5bf4SSatish Balay if (imark > -1) { 1376acdf5bf4SSatish Balay for (i=0; i<imark; i++) { 1377bd16c2feSSatish Balay idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs; 1378acdf5bf4SSatish Balay } 1379acdf5bf4SSatish Balay } else { 1380acdf5bf4SSatish Balay for (i=0; i<nzB; i++) { 138126fbe8dcSKarl Rupp if (cmap[cworkB[i]/bs] < cstart) idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs; 1382acdf5bf4SSatish Balay else break; 1383acdf5bf4SSatish Balay } 1384acdf5bf4SSatish Balay imark = i; 1385acdf5bf4SSatish Balay } 1386d9d09a02SSatish Balay for (i=0; i<nzA; i++) idx_p[imark+i] = cstart*bs + cworkA[i]; 1387d9d09a02SSatish Balay for (i=imark; i<nzB; i++) idx_p[nzA+i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ; 1388acdf5bf4SSatish Balay } 1389d64ed03dSBarry Smith } else { 1390d212a18eSSatish Balay if (idx) *idx = 0; 1391d212a18eSSatish Balay if (v) *v = 0; 1392d212a18eSSatish Balay } 1393acdf5bf4SSatish Balay } 1394acdf5bf4SSatish Balay *nz = nztot; 1395f830108cSBarry Smith ierr = (*mat->A->ops->restorerow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr); 1396f830108cSBarry Smith ierr = (*mat->B->ops->restorerow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr); 13973a40ed3dSBarry Smith PetscFunctionReturn(0); 1398acdf5bf4SSatish Balay } 1399acdf5bf4SSatish Balay 1400b24ad042SBarry Smith PetscErrorCode MatRestoreRow_MPIBAIJ(Mat mat,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 1401acdf5bf4SSatish Balay { 1402acdf5bf4SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 1403d64ed03dSBarry Smith 1404d64ed03dSBarry Smith PetscFunctionBegin; 1405e7e72b3dSBarry Smith if (!baij->getrowactive) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"MatGetRow not called"); 1406acdf5bf4SSatish Balay baij->getrowactive = PETSC_FALSE; 14073a40ed3dSBarry Smith PetscFunctionReturn(0); 1408acdf5bf4SSatish Balay } 1409acdf5bf4SSatish Balay 1410dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_MPIBAIJ(Mat A) 141158667388SSatish Balay { 141258667388SSatish Balay Mat_MPIBAIJ *l = (Mat_MPIBAIJ*)A->data; 1413dfbe8321SBarry Smith PetscErrorCode ierr; 1414d64ed03dSBarry Smith 1415d64ed03dSBarry Smith PetscFunctionBegin; 141658667388SSatish Balay ierr = MatZeroEntries(l->A);CHKERRQ(ierr); 141758667388SSatish Balay ierr = MatZeroEntries(l->B);CHKERRQ(ierr); 14183a40ed3dSBarry Smith PetscFunctionReturn(0); 141958667388SSatish Balay } 14200ac07820SSatish Balay 1421dfbe8321SBarry Smith PetscErrorCode MatGetInfo_MPIBAIJ(Mat matin,MatInfoType flag,MatInfo *info) 14220ac07820SSatish Balay { 14234e220ebcSLois Curfman McInnes Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)matin->data; 14244e220ebcSLois Curfman McInnes Mat A = a->A,B = a->B; 1425dfbe8321SBarry Smith PetscErrorCode ierr; 14263966268fSBarry Smith PetscLogDouble isend[5],irecv[5]; 14270ac07820SSatish Balay 1428d64ed03dSBarry Smith PetscFunctionBegin; 1429d0f46423SBarry Smith info->block_size = (PetscReal)matin->rmap->bs; 143026fbe8dcSKarl Rupp 14314e220ebcSLois Curfman McInnes ierr = MatGetInfo(A,MAT_LOCAL,info);CHKERRQ(ierr); 143226fbe8dcSKarl Rupp 14330e4b21beSBarry Smith isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded; 1434de87f314SBarry Smith isend[3] = info->memory; isend[4] = info->mallocs; 143526fbe8dcSKarl Rupp 14364e220ebcSLois Curfman McInnes ierr = MatGetInfo(B,MAT_LOCAL,info);CHKERRQ(ierr); 143726fbe8dcSKarl Rupp 14380e4b21beSBarry Smith isend[0] += info->nz_used; isend[1] += info->nz_allocated; isend[2] += info->nz_unneeded; 1439de87f314SBarry Smith isend[3] += info->memory; isend[4] += info->mallocs; 144026fbe8dcSKarl Rupp 14410ac07820SSatish Balay if (flag == MAT_LOCAL) { 14424e220ebcSLois Curfman McInnes info->nz_used = isend[0]; 14434e220ebcSLois Curfman McInnes info->nz_allocated = isend[1]; 14444e220ebcSLois Curfman McInnes info->nz_unneeded = isend[2]; 14454e220ebcSLois Curfman McInnes info->memory = isend[3]; 14464e220ebcSLois Curfman McInnes info->mallocs = isend[4]; 14470ac07820SSatish Balay } else if (flag == MAT_GLOBAL_MAX) { 14483966268fSBarry Smith ierr = MPIU_Allreduce(isend,irecv,5,MPIU_PETSCLOGDOUBLE,MPI_MAX,PetscObjectComm((PetscObject)matin));CHKERRQ(ierr); 144926fbe8dcSKarl Rupp 14504e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 14514e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 14524e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 14534e220ebcSLois Curfman McInnes info->memory = irecv[3]; 14544e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 14550ac07820SSatish Balay } else if (flag == MAT_GLOBAL_SUM) { 14563966268fSBarry Smith ierr = MPIU_Allreduce(isend,irecv,5,MPIU_PETSCLOGDOUBLE,MPI_SUM,PetscObjectComm((PetscObject)matin));CHKERRQ(ierr); 145726fbe8dcSKarl Rupp 14584e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 14594e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 14604e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 14614e220ebcSLois Curfman McInnes info->memory = irecv[3]; 14624e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 1463ce94432eSBarry Smith } else SETERRQ1(PetscObjectComm((PetscObject)matin),PETSC_ERR_ARG_WRONG,"Unknown MatInfoType argument %d",(int)flag); 14644e220ebcSLois Curfman McInnes info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */ 14654e220ebcSLois Curfman McInnes info->fill_ratio_needed = 0; 14664e220ebcSLois Curfman McInnes info->factor_mallocs = 0; 14673a40ed3dSBarry Smith PetscFunctionReturn(0); 14680ac07820SSatish Balay } 14690ac07820SSatish Balay 1470ace3abfcSBarry Smith PetscErrorCode MatSetOption_MPIBAIJ(Mat A,MatOption op,PetscBool flg) 147158667388SSatish Balay { 147258667388SSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1473dfbe8321SBarry Smith PetscErrorCode ierr; 147458667388SSatish Balay 1475d64ed03dSBarry Smith PetscFunctionBegin; 147612c028f9SKris Buschelman switch (op) { 1477512a5fc5SBarry Smith case MAT_NEW_NONZERO_LOCATIONS: 147812c028f9SKris Buschelman case MAT_NEW_NONZERO_ALLOCATION_ERR: 147928b2fa4aSMatthew Knepley case MAT_UNUSED_NONZERO_LOCATION_ERR: 1480a9817697SBarry Smith case MAT_KEEP_NONZERO_PATTERN: 148112c028f9SKris Buschelman case MAT_NEW_NONZERO_LOCATION_ERR: 148243674050SBarry Smith MatCheckPreallocated(A,1); 14834e0d8c25SBarry Smith ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 14844e0d8c25SBarry Smith ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr); 148512c028f9SKris Buschelman break; 148612c028f9SKris Buschelman case MAT_ROW_ORIENTED: 148743674050SBarry Smith MatCheckPreallocated(A,1); 14884e0d8c25SBarry Smith a->roworiented = flg; 148926fbe8dcSKarl Rupp 14904e0d8c25SBarry Smith ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 14914e0d8c25SBarry Smith ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr); 149212c028f9SKris Buschelman break; 14934e0d8c25SBarry Smith case MAT_NEW_DIAGONALS: 1494071fcb05SBarry Smith case MAT_SORTED_FULL: 1495290bbb0aSBarry Smith ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr); 149612c028f9SKris Buschelman break; 149712c028f9SKris Buschelman case MAT_IGNORE_OFF_PROC_ENTRIES: 14984e0d8c25SBarry Smith a->donotstash = flg; 149912c028f9SKris Buschelman break; 150012c028f9SKris Buschelman case MAT_USE_HASH_TABLE: 15014e0d8c25SBarry Smith a->ht_flag = flg; 1502abf3b562SBarry Smith a->ht_fact = 1.39; 150312c028f9SKris Buschelman break; 150477e54ba9SKris Buschelman case MAT_SYMMETRIC: 150577e54ba9SKris Buschelman case MAT_STRUCTURALLY_SYMMETRIC: 15062188ac68SBarry Smith case MAT_HERMITIAN: 1507c10200c1SHong Zhang case MAT_SUBMAT_SINGLEIS: 15082188ac68SBarry Smith case MAT_SYMMETRY_ETERNAL: 150943674050SBarry Smith MatCheckPreallocated(A,1); 15104e0d8c25SBarry Smith ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 151177e54ba9SKris Buschelman break; 151212c028f9SKris Buschelman default: 1513ce94432eSBarry Smith SETERRQ1(PetscObjectComm((PetscObject)A),PETSC_ERR_SUP,"unknown option %d",op); 1514d64ed03dSBarry Smith } 15153a40ed3dSBarry Smith PetscFunctionReturn(0); 151658667388SSatish Balay } 151758667388SSatish Balay 1518fc4dec0aSBarry Smith PetscErrorCode MatTranspose_MPIBAIJ(Mat A,MatReuse reuse,Mat *matout) 15190ac07820SSatish Balay { 15200ac07820SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)A->data; 15210ac07820SSatish Balay Mat_SeqBAIJ *Aloc; 15220ac07820SSatish Balay Mat B; 1523dfbe8321SBarry Smith PetscErrorCode ierr; 1524d0f46423SBarry Smith PetscInt M =A->rmap->N,N=A->cmap->N,*ai,*aj,i,*rvals,j,k,col; 1525d0f46423SBarry Smith PetscInt bs=A->rmap->bs,mbs=baij->mbs; 15263eda8832SBarry Smith MatScalar *a; 15270ac07820SSatish Balay 1528d64ed03dSBarry Smith PetscFunctionBegin; 1529cf37664fSBarry Smith if (reuse == MAT_INITIAL_MATRIX || reuse == MAT_INPLACE_MATRIX) { 1530ce94432eSBarry Smith ierr = MatCreate(PetscObjectComm((PetscObject)A),&B);CHKERRQ(ierr); 1531d0f46423SBarry Smith ierr = MatSetSizes(B,A->cmap->n,A->rmap->n,N,M);CHKERRQ(ierr); 15327adad957SLisandro Dalcin ierr = MatSetType(B,((PetscObject)A)->type_name);CHKERRQ(ierr); 15332e72b8d9SBarry Smith /* Do not know preallocation information, but must set block size */ 15340298fd71SBarry Smith ierr = MatMPIBAIJSetPreallocation(B,A->rmap->bs,PETSC_DECIDE,NULL,PETSC_DECIDE,NULL);CHKERRQ(ierr); 1535fc4dec0aSBarry Smith } else { 1536fc4dec0aSBarry Smith B = *matout; 1537fc4dec0aSBarry Smith } 15380ac07820SSatish Balay 15390ac07820SSatish Balay /* copy over the A part */ 15400ac07820SSatish Balay Aloc = (Mat_SeqBAIJ*)baij->A->data; 15410ac07820SSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 1542785e854fSJed Brown ierr = PetscMalloc1(bs,&rvals);CHKERRQ(ierr); 15430ac07820SSatish Balay 15440ac07820SSatish Balay for (i=0; i<mbs; i++) { 1545899cda47SBarry Smith rvals[0] = bs*(baij->rstartbs + i); 154626fbe8dcSKarl Rupp for (j=1; j<bs; j++) rvals[j] = rvals[j-1] + 1; 15470ac07820SSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 1548899cda47SBarry Smith col = (baij->cstartbs+aj[j])*bs; 15490ac07820SSatish Balay for (k=0; k<bs; k++) { 155097e5c40aSBarry Smith ierr = MatSetValues_MPIBAIJ(B,1,&col,bs,rvals,a,INSERT_VALUES);CHKERRQ(ierr); 155126fbe8dcSKarl Rupp 15520ac07820SSatish Balay col++; a += bs; 15530ac07820SSatish Balay } 15540ac07820SSatish Balay } 15550ac07820SSatish Balay } 15560ac07820SSatish Balay /* copy over the B part */ 15570ac07820SSatish Balay Aloc = (Mat_SeqBAIJ*)baij->B->data; 15580ac07820SSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 15590ac07820SSatish Balay for (i=0; i<mbs; i++) { 1560899cda47SBarry Smith rvals[0] = bs*(baij->rstartbs + i); 156126fbe8dcSKarl Rupp for (j=1; j<bs; j++) rvals[j] = rvals[j-1] + 1; 15620ac07820SSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 15630ac07820SSatish Balay col = baij->garray[aj[j]]*bs; 15640ac07820SSatish Balay for (k=0; k<bs; k++) { 156597e5c40aSBarry Smith ierr = MatSetValues_MPIBAIJ(B,1,&col,bs,rvals,a,INSERT_VALUES);CHKERRQ(ierr); 156626fbe8dcSKarl Rupp col++; 156726fbe8dcSKarl Rupp a += bs; 15680ac07820SSatish Balay } 15690ac07820SSatish Balay } 15700ac07820SSatish Balay } 1571606d414cSSatish Balay ierr = PetscFree(rvals);CHKERRQ(ierr); 15720ac07820SSatish Balay ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 15730ac07820SSatish Balay ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 15740ac07820SSatish Balay 1575cf37664fSBarry Smith if (reuse == MAT_INITIAL_MATRIX || reuse == MAT_REUSE_MATRIX) *matout = B; 157626fbe8dcSKarl Rupp else { 157728be2f97SBarry Smith ierr = MatHeaderMerge(A,&B);CHKERRQ(ierr); 15780ac07820SSatish Balay } 15793a40ed3dSBarry Smith PetscFunctionReturn(0); 15800ac07820SSatish Balay } 15810e95ebc0SSatish Balay 1582dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_MPIBAIJ(Mat mat,Vec ll,Vec rr) 15830e95ebc0SSatish Balay { 158436c4a09eSSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 158536c4a09eSSatish Balay Mat a = baij->A,b = baij->B; 1586dfbe8321SBarry Smith PetscErrorCode ierr; 1587b24ad042SBarry Smith PetscInt s1,s2,s3; 15880e95ebc0SSatish Balay 1589d64ed03dSBarry Smith PetscFunctionBegin; 159036c4a09eSSatish Balay ierr = MatGetLocalSize(mat,&s2,&s3);CHKERRQ(ierr); 159136c4a09eSSatish Balay if (rr) { 159236c4a09eSSatish Balay ierr = VecGetLocalSize(rr,&s1);CHKERRQ(ierr); 1593e32f2f54SBarry Smith if (s1!=s3) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"right vector non-conforming local size"); 159436c4a09eSSatish Balay /* Overlap communication with computation. */ 1595ca9f406cSSatish Balay ierr = VecScatterBegin(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 159636c4a09eSSatish Balay } 15970e95ebc0SSatish Balay if (ll) { 15980e95ebc0SSatish Balay ierr = VecGetLocalSize(ll,&s1);CHKERRQ(ierr); 1599e32f2f54SBarry Smith if (s1!=s2) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"left vector non-conforming local size"); 16000298fd71SBarry Smith ierr = (*b->ops->diagonalscale)(b,ll,NULL);CHKERRQ(ierr); 16010e95ebc0SSatish Balay } 160236c4a09eSSatish Balay /* scale the diagonal block */ 160336c4a09eSSatish Balay ierr = (*a->ops->diagonalscale)(a,ll,rr);CHKERRQ(ierr); 160436c4a09eSSatish Balay 160536c4a09eSSatish Balay if (rr) { 160636c4a09eSSatish Balay /* Do a scatter end and then right scale the off-diagonal block */ 1607ca9f406cSSatish Balay ierr = VecScatterEnd(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 16080298fd71SBarry Smith ierr = (*b->ops->diagonalscale)(b,NULL,baij->lvec);CHKERRQ(ierr); 160936c4a09eSSatish Balay } 16103a40ed3dSBarry Smith PetscFunctionReturn(0); 16110e95ebc0SSatish Balay } 16120e95ebc0SSatish Balay 16132b40b63fSBarry Smith PetscErrorCode MatZeroRows_MPIBAIJ(Mat A,PetscInt N,const PetscInt rows[],PetscScalar diag,Vec x,Vec b) 16140ac07820SSatish Balay { 16150ac07820SSatish Balay Mat_MPIBAIJ *l = (Mat_MPIBAIJ *) A->data; 161665a92638SMatthew G. Knepley PetscInt *lrows; 16176e520ac8SStefano Zampini PetscInt r, len; 161894342113SStefano Zampini PetscBool cong; 16196849ba73SBarry Smith PetscErrorCode ierr; 16200ac07820SSatish Balay 1621d64ed03dSBarry Smith PetscFunctionBegin; 16226e520ac8SStefano Zampini /* get locally owned rows */ 16236e520ac8SStefano Zampini ierr = MatZeroRowsMapLocal_Private(A,N,rows,&len,&lrows);CHKERRQ(ierr); 162497b48c8fSBarry Smith /* fix right hand side if needed */ 162597b48c8fSBarry Smith if (x && b) { 162665a92638SMatthew G. Knepley const PetscScalar *xx; 162765a92638SMatthew G. Knepley PetscScalar *bb; 162865a92638SMatthew G. Knepley 162997b48c8fSBarry Smith ierr = VecGetArrayRead(x,&xx);CHKERRQ(ierr); 163097b48c8fSBarry Smith ierr = VecGetArray(b,&bb);CHKERRQ(ierr); 163165a92638SMatthew G. Knepley for (r = 0; r < len; ++r) bb[lrows[r]] = diag*xx[lrows[r]]; 163297b48c8fSBarry Smith ierr = VecRestoreArrayRead(x,&xx);CHKERRQ(ierr); 163397b48c8fSBarry Smith ierr = VecRestoreArray(b,&bb);CHKERRQ(ierr); 163497b48c8fSBarry Smith } 163597b48c8fSBarry Smith 16360ac07820SSatish Balay /* actually zap the local rows */ 163772dacd9aSBarry Smith /* 163872dacd9aSBarry Smith Zero the required rows. If the "diagonal block" of the matrix 1639a8c7a070SBarry Smith is square and the user wishes to set the diagonal we use separate 164072dacd9aSBarry Smith code so that MatSetValues() is not called for each diagonal allocating 164172dacd9aSBarry Smith new memory, thus calling lots of mallocs and slowing things down. 164272dacd9aSBarry Smith 164372dacd9aSBarry Smith */ 16449c957beeSSatish Balay /* must zero l->B before l->A because the (diag) case below may put values into l->B*/ 1645a34163a4SJed Brown ierr = MatZeroRows_SeqBAIJ(l->B,len,lrows,0.0,NULL,NULL);CHKERRQ(ierr); 164694342113SStefano Zampini ierr = MatHasCongruentLayouts(A,&cong);CHKERRQ(ierr); 164794342113SStefano Zampini if ((diag != 0.0) && cong) { 1648a34163a4SJed Brown ierr = MatZeroRows_SeqBAIJ(l->A,len,lrows,diag,NULL,NULL);CHKERRQ(ierr); 1649f4df32b1SMatthew Knepley } else if (diag != 0.0) { 165065a92638SMatthew G. Knepley ierr = MatZeroRows_SeqBAIJ(l->A,len,lrows,0.0,0,0);CHKERRQ(ierr); 1651e7e72b3dSBarry Smith if (((Mat_SeqBAIJ*)l->A->data)->nonew) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"MatZeroRows() on rectangular matrices cannot be used with the Mat options \n\ 1652512a5fc5SBarry Smith MAT_NEW_NONZERO_LOCATIONS,MAT_NEW_NONZERO_LOCATION_ERR,MAT_NEW_NONZERO_ALLOCATION_ERR"); 165365a92638SMatthew G. Knepley for (r = 0; r < len; ++r) { 165465a92638SMatthew G. Knepley const PetscInt row = lrows[r] + A->rmap->rstart; 1655f4df32b1SMatthew Knepley ierr = MatSetValues(A,1,&row,1,&row,&diag,INSERT_VALUES);CHKERRQ(ierr); 1656a07cd24cSSatish Balay } 1657a07cd24cSSatish Balay ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 1658a07cd24cSSatish Balay ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 16599c957beeSSatish Balay } else { 1660a34163a4SJed Brown ierr = MatZeroRows_SeqBAIJ(l->A,len,lrows,0.0,NULL,NULL);CHKERRQ(ierr); 1661a07cd24cSSatish Balay } 1662606d414cSSatish Balay ierr = PetscFree(lrows);CHKERRQ(ierr); 16634f9cfa9eSBarry Smith 16644f9cfa9eSBarry Smith /* only change matrix nonzero state if pattern was allowed to be changed */ 16654f9cfa9eSBarry Smith if (!((Mat_SeqBAIJ*)(l->A->data))->keepnonzeropattern) { 1666e56f5c9eSBarry Smith PetscObjectState state = l->A->nonzerostate + l->B->nonzerostate; 1667b2566f29SBarry Smith ierr = MPIU_Allreduce(&state,&A->nonzerostate,1,MPIU_INT64,MPI_SUM,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 1668e56f5c9eSBarry Smith } 16693a40ed3dSBarry Smith PetscFunctionReturn(0); 16700ac07820SSatish Balay } 167172dacd9aSBarry Smith 16726f0a72daSMatthew G. Knepley PetscErrorCode MatZeroRowsColumns_MPIBAIJ(Mat A,PetscInt N,const PetscInt rows[],PetscScalar diag,Vec x,Vec b) 16736f0a72daSMatthew G. Knepley { 16746f0a72daSMatthew G. Knepley Mat_MPIBAIJ *l = (Mat_MPIBAIJ*)A->data; 16756f0a72daSMatthew G. Knepley PetscErrorCode ierr; 1676131c27b5Sprj- PetscMPIInt n = A->rmap->n,p = 0; 1677131c27b5Sprj- PetscInt i,j,k,r,len = 0,row,col,count; 16786f0a72daSMatthew G. Knepley PetscInt *lrows,*owners = A->rmap->range; 16796f0a72daSMatthew G. Knepley PetscSFNode *rrows; 16806f0a72daSMatthew G. Knepley PetscSF sf; 16816f0a72daSMatthew G. Knepley const PetscScalar *xx; 16826f0a72daSMatthew G. Knepley PetscScalar *bb,*mask; 16836f0a72daSMatthew G. Knepley Vec xmask,lmask; 16846f0a72daSMatthew G. Knepley Mat_SeqBAIJ *baij = (Mat_SeqBAIJ*)l->B->data; 16856f0a72daSMatthew G. Knepley PetscInt bs = A->rmap->bs, bs2 = baij->bs2; 16866f0a72daSMatthew G. Knepley PetscScalar *aa; 16876f0a72daSMatthew G. Knepley 16886f0a72daSMatthew G. Knepley PetscFunctionBegin; 16896f0a72daSMatthew G. Knepley /* Create SF where leaves are input rows and roots are owned rows */ 16906f0a72daSMatthew G. Knepley ierr = PetscMalloc1(n, &lrows);CHKERRQ(ierr); 16916f0a72daSMatthew G. Knepley for (r = 0; r < n; ++r) lrows[r] = -1; 16926f0a72daSMatthew G. Knepley ierr = PetscMalloc1(N, &rrows);CHKERRQ(ierr); 16936f0a72daSMatthew G. Knepley for (r = 0; r < N; ++r) { 16946f0a72daSMatthew G. Knepley const PetscInt idx = rows[r]; 16955ba17502SJed Brown if (idx < 0 || A->rmap->N <= idx) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row %D out of range [0,%D)",idx,A->rmap->N); 16965ba17502SJed Brown if (idx < owners[p] || owners[p+1] <= idx) { /* short-circuit the search if the last p owns this row too */ 16975ba17502SJed Brown ierr = PetscLayoutFindOwner(A->rmap,idx,&p);CHKERRQ(ierr); 16985ba17502SJed Brown } 16996f0a72daSMatthew G. Knepley rrows[r].rank = p; 17006f0a72daSMatthew G. Knepley rrows[r].index = rows[r] - owners[p]; 17016f0a72daSMatthew G. Knepley } 17026f0a72daSMatthew G. Knepley ierr = PetscSFCreate(PetscObjectComm((PetscObject) A), &sf);CHKERRQ(ierr); 17036f0a72daSMatthew G. Knepley ierr = PetscSFSetGraph(sf, n, N, NULL, PETSC_OWN_POINTER, rrows, PETSC_OWN_POINTER);CHKERRQ(ierr); 17046f0a72daSMatthew G. Knepley /* Collect flags for rows to be zeroed */ 17056f0a72daSMatthew G. Knepley ierr = PetscSFReduceBegin(sf, MPIU_INT, (PetscInt *) rows, lrows, MPI_LOR);CHKERRQ(ierr); 17066f0a72daSMatthew G. Knepley ierr = PetscSFReduceEnd(sf, MPIU_INT, (PetscInt *) rows, lrows, MPI_LOR);CHKERRQ(ierr); 17076f0a72daSMatthew G. Knepley ierr = PetscSFDestroy(&sf);CHKERRQ(ierr); 17086f0a72daSMatthew G. Knepley /* Compress and put in row numbers */ 17096f0a72daSMatthew G. Knepley for (r = 0; r < n; ++r) if (lrows[r] >= 0) lrows[len++] = r; 17106f0a72daSMatthew G. Knepley /* zero diagonal part of matrix */ 17116f0a72daSMatthew G. Knepley ierr = MatZeroRowsColumns(l->A,len,lrows,diag,x,b);CHKERRQ(ierr); 17126f0a72daSMatthew G. Knepley /* handle off diagonal part of matrix */ 17132a7a6963SBarry Smith ierr = MatCreateVecs(A,&xmask,NULL);CHKERRQ(ierr); 17146f0a72daSMatthew G. Knepley ierr = VecDuplicate(l->lvec,&lmask);CHKERRQ(ierr); 17156f0a72daSMatthew G. Knepley ierr = VecGetArray(xmask,&bb);CHKERRQ(ierr); 17166f0a72daSMatthew G. Knepley for (i=0; i<len; i++) bb[lrows[i]] = 1; 17176f0a72daSMatthew G. Knepley ierr = VecRestoreArray(xmask,&bb);CHKERRQ(ierr); 17186f0a72daSMatthew G. Knepley ierr = VecScatterBegin(l->Mvctx,xmask,lmask,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 17196f0a72daSMatthew G. Knepley ierr = VecScatterEnd(l->Mvctx,xmask,lmask,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 17206f0a72daSMatthew G. Knepley ierr = VecDestroy(&xmask);CHKERRQ(ierr); 17216f0a72daSMatthew G. Knepley if (x) { 17226f0a72daSMatthew G. Knepley ierr = VecScatterBegin(l->Mvctx,x,l->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 17236f0a72daSMatthew G. Knepley ierr = VecScatterEnd(l->Mvctx,x,l->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 17246f0a72daSMatthew G. Knepley ierr = VecGetArrayRead(l->lvec,&xx);CHKERRQ(ierr); 17256f0a72daSMatthew G. Knepley ierr = VecGetArray(b,&bb);CHKERRQ(ierr); 17266f0a72daSMatthew G. Knepley } 17276f0a72daSMatthew G. Knepley ierr = VecGetArray(lmask,&mask);CHKERRQ(ierr); 17286f0a72daSMatthew G. Knepley /* remove zeroed rows of off diagonal matrix */ 17296f0a72daSMatthew G. Knepley for (i = 0; i < len; ++i) { 17306f0a72daSMatthew G. Knepley row = lrows[i]; 17316f0a72daSMatthew G. Knepley count = (baij->i[row/bs +1] - baij->i[row/bs])*bs; 17326f0a72daSMatthew G. Knepley aa = ((MatScalar*)(baij->a)) + baij->i[row/bs]*bs2 + (row%bs); 17336f0a72daSMatthew G. Knepley for (k = 0; k < count; ++k) { 17346f0a72daSMatthew G. Knepley aa[0] = 0.0; 17356f0a72daSMatthew G. Knepley aa += bs; 17366f0a72daSMatthew G. Knepley } 17376f0a72daSMatthew G. Knepley } 17386f0a72daSMatthew G. Knepley /* loop over all elements of off process part of matrix zeroing removed columns*/ 17396f0a72daSMatthew G. Knepley for (i = 0; i < l->B->rmap->N; ++i) { 17406f0a72daSMatthew G. Knepley row = i/bs; 17416f0a72daSMatthew G. Knepley for (j = baij->i[row]; j < baij->i[row+1]; ++j) { 17426f0a72daSMatthew G. Knepley for (k = 0; k < bs; ++k) { 17436f0a72daSMatthew G. Knepley col = bs*baij->j[j] + k; 17446f0a72daSMatthew G. Knepley if (PetscAbsScalar(mask[col])) { 17456f0a72daSMatthew G. Knepley aa = ((MatScalar*)(baij->a)) + j*bs2 + (i%bs) + bs*k; 174689ae1891SBarry Smith if (x) bb[i] -= aa[0]*xx[col]; 17476f0a72daSMatthew G. Knepley aa[0] = 0.0; 17486f0a72daSMatthew G. Knepley } 17496f0a72daSMatthew G. Knepley } 17506f0a72daSMatthew G. Knepley } 17516f0a72daSMatthew G. Knepley } 17526f0a72daSMatthew G. Knepley if (x) { 17536f0a72daSMatthew G. Knepley ierr = VecRestoreArray(b,&bb);CHKERRQ(ierr); 17546f0a72daSMatthew G. Knepley ierr = VecRestoreArrayRead(l->lvec,&xx);CHKERRQ(ierr); 17556f0a72daSMatthew G. Knepley } 17566f0a72daSMatthew G. Knepley ierr = VecRestoreArray(lmask,&mask);CHKERRQ(ierr); 17576f0a72daSMatthew G. Knepley ierr = VecDestroy(&lmask);CHKERRQ(ierr); 17586f0a72daSMatthew G. Knepley ierr = PetscFree(lrows);CHKERRQ(ierr); 17594f9cfa9eSBarry Smith 17604f9cfa9eSBarry Smith /* only change matrix nonzero state if pattern was allowed to be changed */ 17614f9cfa9eSBarry Smith if (!((Mat_SeqBAIJ*)(l->A->data))->keepnonzeropattern) { 17624f9cfa9eSBarry Smith PetscObjectState state = l->A->nonzerostate + l->B->nonzerostate; 1763b2566f29SBarry Smith ierr = MPIU_Allreduce(&state,&A->nonzerostate,1,MPIU_INT64,MPI_SUM,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 17644f9cfa9eSBarry Smith } 17656f0a72daSMatthew G. Knepley PetscFunctionReturn(0); 17666f0a72daSMatthew G. Knepley } 17676f0a72daSMatthew G. Knepley 1768dfbe8321SBarry Smith PetscErrorCode MatSetUnfactored_MPIBAIJ(Mat A) 1769bb5a7306SBarry Smith { 1770bb5a7306SBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1771dfbe8321SBarry Smith PetscErrorCode ierr; 1772d64ed03dSBarry Smith 1773d64ed03dSBarry Smith PetscFunctionBegin; 1774bb5a7306SBarry Smith ierr = MatSetUnfactored(a->A);CHKERRQ(ierr); 17753a40ed3dSBarry Smith PetscFunctionReturn(0); 1776bb5a7306SBarry Smith } 1777bb5a7306SBarry Smith 17786849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIBAIJ(Mat,MatDuplicateOption,Mat*); 17790ac07820SSatish Balay 1780ace3abfcSBarry Smith PetscErrorCode MatEqual_MPIBAIJ(Mat A,Mat B,PetscBool *flag) 17817fc3c18eSBarry Smith { 17827fc3c18eSBarry Smith Mat_MPIBAIJ *matB = (Mat_MPIBAIJ*)B->data,*matA = (Mat_MPIBAIJ*)A->data; 17837fc3c18eSBarry Smith Mat a,b,c,d; 1784ace3abfcSBarry Smith PetscBool flg; 1785dfbe8321SBarry Smith PetscErrorCode ierr; 17867fc3c18eSBarry Smith 17877fc3c18eSBarry Smith PetscFunctionBegin; 17887fc3c18eSBarry Smith a = matA->A; b = matA->B; 17897fc3c18eSBarry Smith c = matB->A; d = matB->B; 17907fc3c18eSBarry Smith 17917fc3c18eSBarry Smith ierr = MatEqual(a,c,&flg);CHKERRQ(ierr); 1792abc0a331SBarry Smith if (flg) { 17937fc3c18eSBarry Smith ierr = MatEqual(b,d,&flg);CHKERRQ(ierr); 17947fc3c18eSBarry Smith } 1795b2566f29SBarry Smith ierr = MPIU_Allreduce(&flg,flag,1,MPIU_BOOL,MPI_LAND,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 17967fc3c18eSBarry Smith PetscFunctionReturn(0); 17977fc3c18eSBarry Smith } 17987fc3c18eSBarry Smith 17993c896bc6SHong Zhang PetscErrorCode MatCopy_MPIBAIJ(Mat A,Mat B,MatStructure str) 18003c896bc6SHong Zhang { 18013c896bc6SHong Zhang PetscErrorCode ierr; 18023c896bc6SHong Zhang Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 18033c896bc6SHong Zhang Mat_MPIBAIJ *b = (Mat_MPIBAIJ*)B->data; 18043c896bc6SHong Zhang 18053c896bc6SHong Zhang PetscFunctionBegin; 18063c896bc6SHong Zhang /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */ 18073c896bc6SHong Zhang if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) { 18083c896bc6SHong Zhang ierr = MatCopy_Basic(A,B,str);CHKERRQ(ierr); 18093c896bc6SHong Zhang } else { 18103c896bc6SHong Zhang ierr = MatCopy(a->A,b->A,str);CHKERRQ(ierr); 18113c896bc6SHong Zhang ierr = MatCopy(a->B,b->B,str);CHKERRQ(ierr); 18123c896bc6SHong Zhang } 1813cdc753b6SBarry Smith ierr = PetscObjectStateIncrease((PetscObject)B);CHKERRQ(ierr); 18143c896bc6SHong Zhang PetscFunctionReturn(0); 18153c896bc6SHong Zhang } 1816273d9f13SBarry Smith 18174994cf47SJed Brown PetscErrorCode MatSetUp_MPIBAIJ(Mat A) 1818273d9f13SBarry Smith { 1819dfbe8321SBarry Smith PetscErrorCode ierr; 1820273d9f13SBarry Smith 1821273d9f13SBarry Smith PetscFunctionBegin; 1822535b19f3SBarry Smith ierr = MatMPIBAIJSetPreallocation(A,A->rmap->bs,PETSC_DEFAULT,0,PETSC_DEFAULT,0);CHKERRQ(ierr); 1823273d9f13SBarry Smith PetscFunctionReturn(0); 1824273d9f13SBarry Smith } 1825273d9f13SBarry Smith 18264de5dceeSHong Zhang PetscErrorCode MatAXPYGetPreallocation_MPIBAIJ(Mat Y,const PetscInt *yltog,Mat X,const PetscInt *xltog,PetscInt *nnz) 18274de5dceeSHong Zhang { 1828001ddc4fSHong Zhang PetscErrorCode ierr; 1829001ddc4fSHong Zhang PetscInt bs = Y->rmap->bs,m = Y->rmap->N/bs; 18304de5dceeSHong Zhang Mat_SeqBAIJ *x = (Mat_SeqBAIJ*)X->data; 18314de5dceeSHong Zhang Mat_SeqBAIJ *y = (Mat_SeqBAIJ*)Y->data; 18324de5dceeSHong Zhang 18334de5dceeSHong Zhang PetscFunctionBegin; 1834001ddc4fSHong Zhang ierr = MatAXPYGetPreallocation_MPIX_private(m,x->i,x->j,xltog,y->i,y->j,yltog,nnz);CHKERRQ(ierr); 18354de5dceeSHong Zhang PetscFunctionReturn(0); 18364de5dceeSHong Zhang } 18374de5dceeSHong Zhang 18384fe895cdSHong Zhang PetscErrorCode MatAXPY_MPIBAIJ(Mat Y,PetscScalar a,Mat X,MatStructure str) 18394fe895cdSHong Zhang { 18404fe895cdSHong Zhang PetscErrorCode ierr; 18414fe895cdSHong Zhang Mat_MPIBAIJ *xx=(Mat_MPIBAIJ*)X->data,*yy=(Mat_MPIBAIJ*)Y->data; 18424fe895cdSHong Zhang PetscBLASInt bnz,one=1; 18434fe895cdSHong Zhang Mat_SeqBAIJ *x,*y; 1844b31f67cfSBarry Smith PetscInt bs2 = Y->rmap->bs*Y->rmap->bs; 18454fe895cdSHong Zhang 18464fe895cdSHong Zhang PetscFunctionBegin; 18474fe895cdSHong Zhang if (str == SAME_NONZERO_PATTERN) { 18484fe895cdSHong Zhang PetscScalar alpha = a; 18494fe895cdSHong Zhang x = (Mat_SeqBAIJ*)xx->A->data; 18504fe895cdSHong Zhang y = (Mat_SeqBAIJ*)yy->A->data; 1851b31f67cfSBarry Smith ierr = PetscBLASIntCast(x->nz*bs2,&bnz);CHKERRQ(ierr); 18528b83055fSJed Brown PetscStackCallBLAS("BLASaxpy",BLASaxpy_(&bnz,&alpha,x->a,&one,y->a,&one)); 18534fe895cdSHong Zhang x = (Mat_SeqBAIJ*)xx->B->data; 18544fe895cdSHong Zhang y = (Mat_SeqBAIJ*)yy->B->data; 1855b31f67cfSBarry Smith ierr = PetscBLASIntCast(x->nz*bs2,&bnz);CHKERRQ(ierr); 18568b83055fSJed Brown PetscStackCallBLAS("BLASaxpy",BLASaxpy_(&bnz,&alpha,x->a,&one,y->a,&one)); 1857a3fa217bSJose E. Roman ierr = PetscObjectStateIncrease((PetscObject)Y);CHKERRQ(ierr); 1858ab784542SHong Zhang } else if (str == SUBSET_NONZERO_PATTERN) { /* nonzeros of X is a subset of Y's */ 1859ab784542SHong Zhang ierr = MatAXPY_Basic(Y,a,X,str);CHKERRQ(ierr); 18604fe895cdSHong Zhang } else { 18614de5dceeSHong Zhang Mat B; 18624de5dceeSHong Zhang PetscInt *nnz_d,*nnz_o,bs=Y->rmap->bs; 18634de5dceeSHong Zhang ierr = PetscMalloc1(yy->A->rmap->N,&nnz_d);CHKERRQ(ierr); 18644de5dceeSHong Zhang ierr = PetscMalloc1(yy->B->rmap->N,&nnz_o);CHKERRQ(ierr); 18654de5dceeSHong Zhang ierr = MatCreate(PetscObjectComm((PetscObject)Y),&B);CHKERRQ(ierr); 18664de5dceeSHong Zhang ierr = PetscObjectSetName((PetscObject)B,((PetscObject)Y)->name);CHKERRQ(ierr); 18674de5dceeSHong Zhang ierr = MatSetSizes(B,Y->rmap->n,Y->cmap->n,Y->rmap->N,Y->cmap->N);CHKERRQ(ierr); 18684de5dceeSHong Zhang ierr = MatSetBlockSizesFromMats(B,Y,Y);CHKERRQ(ierr); 18694de5dceeSHong Zhang ierr = MatSetType(B,MATMPIBAIJ);CHKERRQ(ierr); 18704de5dceeSHong Zhang ierr = MatAXPYGetPreallocation_SeqBAIJ(yy->A,xx->A,nnz_d);CHKERRQ(ierr); 18714de5dceeSHong Zhang ierr = MatAXPYGetPreallocation_MPIBAIJ(yy->B,yy->garray,xx->B,xx->garray,nnz_o);CHKERRQ(ierr); 18724de5dceeSHong Zhang ierr = MatMPIBAIJSetPreallocation(B,bs,0,nnz_d,0,nnz_o);CHKERRQ(ierr); 18734de5dceeSHong Zhang /* MatAXPY_BasicWithPreallocation() for BAIJ matrix is much slower than AIJ, even for bs=1 ! */ 18744de5dceeSHong Zhang ierr = MatAXPY_BasicWithPreallocation(B,Y,a,X,str);CHKERRQ(ierr); 187528be2f97SBarry Smith ierr = MatHeaderReplace(Y,&B);CHKERRQ(ierr); 18764de5dceeSHong Zhang ierr = PetscFree(nnz_d);CHKERRQ(ierr); 18774de5dceeSHong Zhang ierr = PetscFree(nnz_o);CHKERRQ(ierr); 18784fe895cdSHong Zhang } 18794fe895cdSHong Zhang PetscFunctionReturn(0); 18804fe895cdSHong Zhang } 18814fe895cdSHong Zhang 188299cafbc1SBarry Smith PetscErrorCode MatRealPart_MPIBAIJ(Mat A) 188399cafbc1SBarry Smith { 188499cafbc1SBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 188599cafbc1SBarry Smith PetscErrorCode ierr; 188699cafbc1SBarry Smith 188799cafbc1SBarry Smith PetscFunctionBegin; 188899cafbc1SBarry Smith ierr = MatRealPart(a->A);CHKERRQ(ierr); 188999cafbc1SBarry Smith ierr = MatRealPart(a->B);CHKERRQ(ierr); 189099cafbc1SBarry Smith PetscFunctionReturn(0); 189199cafbc1SBarry Smith } 189299cafbc1SBarry Smith 189399cafbc1SBarry Smith PetscErrorCode MatImaginaryPart_MPIBAIJ(Mat A) 189499cafbc1SBarry Smith { 189599cafbc1SBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 189699cafbc1SBarry Smith PetscErrorCode ierr; 189799cafbc1SBarry Smith 189899cafbc1SBarry Smith PetscFunctionBegin; 189999cafbc1SBarry Smith ierr = MatImaginaryPart(a->A);CHKERRQ(ierr); 190099cafbc1SBarry Smith ierr = MatImaginaryPart(a->B);CHKERRQ(ierr); 190199cafbc1SBarry Smith PetscFunctionReturn(0); 190299cafbc1SBarry Smith } 190399cafbc1SBarry Smith 19047dae84e0SHong Zhang PetscErrorCode MatCreateSubMatrix_MPIBAIJ(Mat mat,IS isrow,IS iscol,MatReuse call,Mat *newmat) 19054aa3045dSJed Brown { 19064aa3045dSJed Brown PetscErrorCode ierr; 19074aa3045dSJed Brown IS iscol_local; 19084aa3045dSJed Brown PetscInt csize; 19094aa3045dSJed Brown 19104aa3045dSJed Brown PetscFunctionBegin; 19114aa3045dSJed Brown ierr = ISGetLocalSize(iscol,&csize);CHKERRQ(ierr); 1912b79d0421SJed Brown if (call == MAT_REUSE_MATRIX) { 1913b79d0421SJed Brown ierr = PetscObjectQuery((PetscObject)*newmat,"ISAllGather",(PetscObject*)&iscol_local);CHKERRQ(ierr); 1914e32f2f54SBarry Smith if (!iscol_local) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Submatrix passed in was not used before, cannot reuse"); 1915b79d0421SJed Brown } else { 19164aa3045dSJed Brown ierr = ISAllGather(iscol,&iscol_local);CHKERRQ(ierr); 1917b79d0421SJed Brown } 19187dae84e0SHong Zhang ierr = MatCreateSubMatrix_MPIBAIJ_Private(mat,isrow,iscol_local,csize,call,newmat);CHKERRQ(ierr); 1919b79d0421SJed Brown if (call == MAT_INITIAL_MATRIX) { 1920b79d0421SJed Brown ierr = PetscObjectCompose((PetscObject)*newmat,"ISAllGather",(PetscObject)iscol_local);CHKERRQ(ierr); 19216bf464f9SBarry Smith ierr = ISDestroy(&iscol_local);CHKERRQ(ierr); 1922b79d0421SJed Brown } 19234aa3045dSJed Brown PetscFunctionReturn(0); 19244aa3045dSJed Brown } 192517df9f7cSHong Zhang 192682094794SBarry Smith /* 192782094794SBarry Smith Not great since it makes two copies of the submatrix, first an SeqBAIJ 192882094794SBarry Smith in local and then by concatenating the local matrices the end result. 19297dae84e0SHong Zhang Writing it directly would be much like MatCreateSubMatrices_MPIBAIJ(). 19308f46ffcaSHong Zhang This routine is used for BAIJ and SBAIJ matrices (unfortunate dependency). 193182094794SBarry Smith */ 19327dae84e0SHong Zhang PetscErrorCode MatCreateSubMatrix_MPIBAIJ_Private(Mat mat,IS isrow,IS iscol,PetscInt csize,MatReuse call,Mat *newmat) 193382094794SBarry Smith { 193482094794SBarry Smith PetscErrorCode ierr; 193582094794SBarry Smith PetscMPIInt rank,size; 193682094794SBarry Smith PetscInt i,m,n,rstart,row,rend,nz,*cwork,j,bs; 1937c9ffca76SHong Zhang PetscInt *ii,*jj,nlocal,*dlens,*olens,dlen,olen,jend,mglobal; 193829dcf524SDmitry Karpeev Mat M,Mreuse; 193982094794SBarry Smith MatScalar *vwork,*aa; 1940ce94432eSBarry Smith MPI_Comm comm; 194129dcf524SDmitry Karpeev IS isrow_new, iscol_new; 194282094794SBarry Smith Mat_SeqBAIJ *aij; 194382094794SBarry Smith 194482094794SBarry Smith PetscFunctionBegin; 1945ce94432eSBarry Smith ierr = PetscObjectGetComm((PetscObject)mat,&comm);CHKERRQ(ierr); 194682094794SBarry Smith ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 194782094794SBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 194829dcf524SDmitry Karpeev /* The compression and expansion should be avoided. Doesn't point 194929dcf524SDmitry Karpeev out errors, might change the indices, hence buggey */ 195029dcf524SDmitry Karpeev ierr = ISCompressIndicesGeneral(mat->rmap->N,mat->rmap->n,mat->rmap->bs,1,&isrow,&isrow_new);CHKERRQ(ierr); 195129dcf524SDmitry Karpeev ierr = ISCompressIndicesGeneral(mat->cmap->N,mat->cmap->n,mat->cmap->bs,1,&iscol,&iscol_new);CHKERRQ(ierr); 195282094794SBarry Smith 195382094794SBarry Smith if (call == MAT_REUSE_MATRIX) { 195482094794SBarry Smith ierr = PetscObjectQuery((PetscObject)*newmat,"SubMatrix",(PetscObject*)&Mreuse);CHKERRQ(ierr); 1955e32f2f54SBarry Smith if (!Mreuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Submatrix passed in was not used before, cannot reuse"); 19567dae84e0SHong Zhang ierr = MatCreateSubMatrices_MPIBAIJ_local(mat,1,&isrow_new,&iscol_new,MAT_REUSE_MATRIX,&Mreuse);CHKERRQ(ierr); 195782094794SBarry Smith } else { 19587dae84e0SHong Zhang ierr = MatCreateSubMatrices_MPIBAIJ_local(mat,1,&isrow_new,&iscol_new,MAT_INITIAL_MATRIX,&Mreuse);CHKERRQ(ierr); 195982094794SBarry Smith } 196029dcf524SDmitry Karpeev ierr = ISDestroy(&isrow_new);CHKERRQ(ierr); 196129dcf524SDmitry Karpeev ierr = ISDestroy(&iscol_new);CHKERRQ(ierr); 196282094794SBarry Smith /* 196382094794SBarry Smith m - number of local rows 196482094794SBarry Smith n - number of columns (same on all processors) 196582094794SBarry Smith rstart - first row in new global matrix generated 196682094794SBarry Smith */ 196782094794SBarry Smith ierr = MatGetBlockSize(mat,&bs);CHKERRQ(ierr); 196882094794SBarry Smith ierr = MatGetSize(Mreuse,&m,&n);CHKERRQ(ierr); 196982094794SBarry Smith m = m/bs; 197082094794SBarry Smith n = n/bs; 197182094794SBarry Smith 197282094794SBarry Smith if (call == MAT_INITIAL_MATRIX) { 197382094794SBarry Smith aij = (Mat_SeqBAIJ*)(Mreuse)->data; 197482094794SBarry Smith ii = aij->i; 197582094794SBarry Smith jj = aij->j; 197682094794SBarry Smith 197782094794SBarry Smith /* 197882094794SBarry Smith Determine the number of non-zeros in the diagonal and off-diagonal 197982094794SBarry Smith portions of the matrix in order to do correct preallocation 198082094794SBarry Smith */ 198182094794SBarry Smith 198282094794SBarry Smith /* first get start and end of "diagonal" columns */ 198382094794SBarry Smith if (csize == PETSC_DECIDE) { 198482094794SBarry Smith ierr = ISGetSize(isrow,&mglobal);CHKERRQ(ierr); 198582094794SBarry Smith if (mglobal == n*bs) { /* square matrix */ 198682094794SBarry Smith nlocal = m; 198782094794SBarry Smith } else { 198882094794SBarry Smith nlocal = n/size + ((n % size) > rank); 198982094794SBarry Smith } 199082094794SBarry Smith } else { 199182094794SBarry Smith nlocal = csize/bs; 199282094794SBarry Smith } 199382094794SBarry Smith ierr = MPI_Scan(&nlocal,&rend,1,MPIU_INT,MPI_SUM,comm);CHKERRQ(ierr); 199482094794SBarry Smith rstart = rend - nlocal; 199565e19b50SBarry Smith if (rank == size - 1 && rend != n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Local column sizes %D do not add up to total number of columns %D",rend,n); 199682094794SBarry Smith 199782094794SBarry Smith /* next, compute all the lengths */ 1998dcca6d9dSJed Brown ierr = PetscMalloc2(m+1,&dlens,m+1,&olens);CHKERRQ(ierr); 199982094794SBarry Smith for (i=0; i<m; i++) { 200082094794SBarry Smith jend = ii[i+1] - ii[i]; 200182094794SBarry Smith olen = 0; 200282094794SBarry Smith dlen = 0; 200382094794SBarry Smith for (j=0; j<jend; j++) { 200482094794SBarry Smith if (*jj < rstart || *jj >= rend) olen++; 200582094794SBarry Smith else dlen++; 200682094794SBarry Smith jj++; 200782094794SBarry Smith } 200882094794SBarry Smith olens[i] = olen; 200982094794SBarry Smith dlens[i] = dlen; 201082094794SBarry Smith } 201182094794SBarry Smith ierr = MatCreate(comm,&M);CHKERRQ(ierr); 201282094794SBarry Smith ierr = MatSetSizes(M,bs*m,bs*nlocal,PETSC_DECIDE,bs*n);CHKERRQ(ierr); 201382094794SBarry Smith ierr = MatSetType(M,((PetscObject)mat)->type_name);CHKERRQ(ierr); 201482094794SBarry Smith ierr = MatMPIBAIJSetPreallocation(M,bs,0,dlens,0,olens);CHKERRQ(ierr); 20158f46ffcaSHong Zhang ierr = MatMPISBAIJSetPreallocation(M,bs,0,dlens,0,olens);CHKERRQ(ierr); 2016eb9baa12SBarry Smith ierr = PetscFree2(dlens,olens);CHKERRQ(ierr); 201782094794SBarry Smith } else { 201882094794SBarry Smith PetscInt ml,nl; 201982094794SBarry Smith 202082094794SBarry Smith M = *newmat; 202182094794SBarry Smith ierr = MatGetLocalSize(M,&ml,&nl);CHKERRQ(ierr); 2022e32f2f54SBarry Smith if (ml != m) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Previous matrix must be same size/layout as request"); 202382094794SBarry Smith ierr = MatZeroEntries(M);CHKERRQ(ierr); 202482094794SBarry Smith /* 202582094794SBarry Smith The next two lines are needed so we may call MatSetValues_MPIAIJ() below directly, 202682094794SBarry Smith rather than the slower MatSetValues(). 202782094794SBarry Smith */ 202882094794SBarry Smith M->was_assembled = PETSC_TRUE; 202982094794SBarry Smith M->assembled = PETSC_FALSE; 203082094794SBarry Smith } 203182094794SBarry Smith ierr = MatSetOption(M,MAT_ROW_ORIENTED,PETSC_FALSE);CHKERRQ(ierr); 203282094794SBarry Smith ierr = MatGetOwnershipRange(M,&rstart,&rend);CHKERRQ(ierr); 203382094794SBarry Smith aij = (Mat_SeqBAIJ*)(Mreuse)->data; 203482094794SBarry Smith ii = aij->i; 203582094794SBarry Smith jj = aij->j; 203682094794SBarry Smith aa = aij->a; 203782094794SBarry Smith for (i=0; i<m; i++) { 203882094794SBarry Smith row = rstart/bs + i; 203982094794SBarry Smith nz = ii[i+1] - ii[i]; 204082094794SBarry Smith cwork = jj; jj += nz; 204175f6568bSJed Brown vwork = aa; aa += nz*bs*bs; 204282094794SBarry Smith ierr = MatSetValuesBlocked_MPIBAIJ(M,1,&row,nz,cwork,vwork,INSERT_VALUES);CHKERRQ(ierr); 204382094794SBarry Smith } 204482094794SBarry Smith 204582094794SBarry Smith ierr = MatAssemblyBegin(M,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 204682094794SBarry Smith ierr = MatAssemblyEnd(M,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 204782094794SBarry Smith *newmat = M; 204882094794SBarry Smith 204982094794SBarry Smith /* save submatrix used in processor for next request */ 205082094794SBarry Smith if (call == MAT_INITIAL_MATRIX) { 205182094794SBarry Smith ierr = PetscObjectCompose((PetscObject)M,"SubMatrix",(PetscObject)Mreuse);CHKERRQ(ierr); 205282094794SBarry Smith ierr = PetscObjectDereference((PetscObject)Mreuse);CHKERRQ(ierr); 205382094794SBarry Smith } 205482094794SBarry Smith PetscFunctionReturn(0); 205582094794SBarry Smith } 205682094794SBarry Smith 205782094794SBarry Smith PetscErrorCode MatPermute_MPIBAIJ(Mat A,IS rowp,IS colp,Mat *B) 205882094794SBarry Smith { 205982094794SBarry Smith MPI_Comm comm,pcomm; 2060a0a83eb5SRémi Lacroix PetscInt clocal_size,nrows; 206182094794SBarry Smith const PetscInt *rows; 2062dbf0e21dSBarry Smith PetscMPIInt size; 2063a0a83eb5SRémi Lacroix IS crowp,lcolp; 206482094794SBarry Smith PetscErrorCode ierr; 206582094794SBarry Smith 206682094794SBarry Smith PetscFunctionBegin; 206782094794SBarry Smith ierr = PetscObjectGetComm((PetscObject)A,&comm);CHKERRQ(ierr); 206882094794SBarry Smith /* make a collective version of 'rowp' */ 206982094794SBarry Smith ierr = PetscObjectGetComm((PetscObject)rowp,&pcomm);CHKERRQ(ierr); 207082094794SBarry Smith if (pcomm==comm) { 207182094794SBarry Smith crowp = rowp; 207282094794SBarry Smith } else { 207382094794SBarry Smith ierr = ISGetSize(rowp,&nrows);CHKERRQ(ierr); 207482094794SBarry Smith ierr = ISGetIndices(rowp,&rows);CHKERRQ(ierr); 207570b3c8c7SBarry Smith ierr = ISCreateGeneral(comm,nrows,rows,PETSC_COPY_VALUES,&crowp);CHKERRQ(ierr); 207682094794SBarry Smith ierr = ISRestoreIndices(rowp,&rows);CHKERRQ(ierr); 207782094794SBarry Smith } 2078a0a83eb5SRémi Lacroix ierr = ISSetPermutation(crowp);CHKERRQ(ierr); 2079a0a83eb5SRémi Lacroix /* make a local version of 'colp' */ 208082094794SBarry Smith ierr = PetscObjectGetComm((PetscObject)colp,&pcomm);CHKERRQ(ierr); 2081dbf0e21dSBarry Smith ierr = MPI_Comm_size(pcomm,&size);CHKERRQ(ierr); 2082dbf0e21dSBarry Smith if (size==1) { 208382094794SBarry Smith lcolp = colp; 208482094794SBarry Smith } else { 208575f6568bSJed Brown ierr = ISAllGather(colp,&lcolp);CHKERRQ(ierr); 208682094794SBarry Smith } 2087dbf0e21dSBarry Smith ierr = ISSetPermutation(lcolp);CHKERRQ(ierr); 208875f6568bSJed Brown /* now we just get the submatrix */ 20897afc1a8bSJed Brown ierr = MatGetLocalSize(A,NULL,&clocal_size);CHKERRQ(ierr); 20907dae84e0SHong Zhang ierr = MatCreateSubMatrix_MPIBAIJ_Private(A,crowp,lcolp,clocal_size,MAT_INITIAL_MATRIX,B);CHKERRQ(ierr); 2091a0a83eb5SRémi Lacroix /* clean up */ 2092a0a83eb5SRémi Lacroix if (pcomm!=comm) { 2093a0a83eb5SRémi Lacroix ierr = ISDestroy(&crowp);CHKERRQ(ierr); 2094a0a83eb5SRémi Lacroix } 2095dbf0e21dSBarry Smith if (size>1) { 20966bf464f9SBarry Smith ierr = ISDestroy(&lcolp);CHKERRQ(ierr); 209782094794SBarry Smith } 209882094794SBarry Smith PetscFunctionReturn(0); 209982094794SBarry Smith } 210082094794SBarry Smith 21017087cfbeSBarry Smith PetscErrorCode MatGetGhosts_MPIBAIJ(Mat mat,PetscInt *nghosts,const PetscInt *ghosts[]) 21028c7482ecSBarry Smith { 21038c7482ecSBarry Smith Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*) mat->data; 21048c7482ecSBarry Smith Mat_SeqBAIJ *B = (Mat_SeqBAIJ*)baij->B->data; 21058c7482ecSBarry Smith 21068c7482ecSBarry Smith PetscFunctionBegin; 210726fbe8dcSKarl Rupp if (nghosts) *nghosts = B->nbs; 210826fbe8dcSKarl Rupp if (ghosts) *ghosts = baij->garray; 21098c7482ecSBarry Smith PetscFunctionReturn(0); 21108c7482ecSBarry Smith } 21118c7482ecSBarry Smith 2112d1adec66SJed Brown PetscErrorCode MatGetSeqNonzeroStructure_MPIBAIJ(Mat A,Mat *newmat) 2113f6d58c54SBarry Smith { 2114f6d58c54SBarry Smith Mat B; 2115f6d58c54SBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 2116f6d58c54SBarry Smith Mat_SeqBAIJ *ad = (Mat_SeqBAIJ*)a->A->data,*bd = (Mat_SeqBAIJ*)a->B->data; 2117f6d58c54SBarry Smith Mat_SeqAIJ *b; 2118f6d58c54SBarry Smith PetscErrorCode ierr; 2119f6d58c54SBarry Smith PetscMPIInt size,rank,*recvcounts = 0,*displs = 0; 2120f6d58c54SBarry Smith PetscInt sendcount,i,*rstarts = A->rmap->range,n,cnt,j,bs = A->rmap->bs; 2121f6d58c54SBarry Smith PetscInt m,*garray = a->garray,*lens,*jsendbuf,*a_jsendbuf,*b_jsendbuf; 2122f6d58c54SBarry Smith 2123f6d58c54SBarry Smith PetscFunctionBegin; 2124ce94432eSBarry Smith ierr = MPI_Comm_size(PetscObjectComm((PetscObject)A),&size);CHKERRQ(ierr); 2125ce94432eSBarry Smith ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)A),&rank);CHKERRQ(ierr); 2126f6d58c54SBarry Smith 2127f6d58c54SBarry Smith /* ---------------------------------------------------------------- 2128f6d58c54SBarry Smith Tell every processor the number of nonzeros per row 2129f6d58c54SBarry Smith */ 2130854ce69bSBarry Smith ierr = PetscMalloc1(A->rmap->N/bs,&lens);CHKERRQ(ierr); 2131f6d58c54SBarry Smith for (i=A->rmap->rstart/bs; i<A->rmap->rend/bs; i++) { 2132f6d58c54SBarry Smith lens[i] = ad->i[i-A->rmap->rstart/bs+1] - ad->i[i-A->rmap->rstart/bs] + bd->i[i-A->rmap->rstart/bs+1] - bd->i[i-A->rmap->rstart/bs]; 2133f6d58c54SBarry Smith } 2134785e854fSJed Brown ierr = PetscMalloc1(2*size,&recvcounts);CHKERRQ(ierr); 2135f6d58c54SBarry Smith displs = recvcounts + size; 2136f6d58c54SBarry Smith for (i=0; i<size; i++) { 2137f6d58c54SBarry Smith recvcounts[i] = A->rmap->range[i+1]/bs - A->rmap->range[i]/bs; 2138f6d58c54SBarry Smith displs[i] = A->rmap->range[i]/bs; 2139f6d58c54SBarry Smith } 2140f6d58c54SBarry Smith #if defined(PETSC_HAVE_MPI_IN_PLACE) 2141ce94432eSBarry Smith ierr = MPI_Allgatherv(MPI_IN_PLACE,0,MPI_DATATYPE_NULL,lens,recvcounts,displs,MPIU_INT,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 2142f6d58c54SBarry Smith #else 21433d3eaba7SBarry Smith sendcount = A->rmap->rend/bs - A->rmap->rstart/bs; 2144ce94432eSBarry Smith ierr = MPI_Allgatherv(lens+A->rmap->rstart/bs,sendcount,MPIU_INT,lens,recvcounts,displs,MPIU_INT,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 2145f6d58c54SBarry Smith #endif 2146f6d58c54SBarry Smith /* --------------------------------------------------------------- 2147f6d58c54SBarry Smith Create the sequential matrix of the same type as the local block diagonal 2148f6d58c54SBarry Smith */ 2149f6d58c54SBarry Smith ierr = MatCreate(PETSC_COMM_SELF,&B);CHKERRQ(ierr); 2150f6d58c54SBarry Smith ierr = MatSetSizes(B,A->rmap->N/bs,A->cmap->N/bs,PETSC_DETERMINE,PETSC_DETERMINE);CHKERRQ(ierr); 2151f6d58c54SBarry Smith ierr = MatSetType(B,MATSEQAIJ);CHKERRQ(ierr); 2152f6d58c54SBarry Smith ierr = MatSeqAIJSetPreallocation(B,0,lens);CHKERRQ(ierr); 2153f6d58c54SBarry Smith b = (Mat_SeqAIJ*)B->data; 2154f6d58c54SBarry Smith 2155f6d58c54SBarry Smith /*-------------------------------------------------------------------- 2156f6d58c54SBarry Smith Copy my part of matrix column indices over 2157f6d58c54SBarry Smith */ 2158f6d58c54SBarry Smith sendcount = ad->nz + bd->nz; 2159f6d58c54SBarry Smith jsendbuf = b->j + b->i[rstarts[rank]/bs]; 2160f6d58c54SBarry Smith a_jsendbuf = ad->j; 2161f6d58c54SBarry Smith b_jsendbuf = bd->j; 2162f6d58c54SBarry Smith n = A->rmap->rend/bs - A->rmap->rstart/bs; 2163f6d58c54SBarry Smith cnt = 0; 2164f6d58c54SBarry Smith for (i=0; i<n; i++) { 2165f6d58c54SBarry Smith 2166f6d58c54SBarry Smith /* put in lower diagonal portion */ 2167f6d58c54SBarry Smith m = bd->i[i+1] - bd->i[i]; 2168f6d58c54SBarry Smith while (m > 0) { 2169f6d58c54SBarry Smith /* is it above diagonal (in bd (compressed) numbering) */ 2170f6d58c54SBarry Smith if (garray[*b_jsendbuf] > A->rmap->rstart/bs + i) break; 2171f6d58c54SBarry Smith jsendbuf[cnt++] = garray[*b_jsendbuf++]; 2172f6d58c54SBarry Smith m--; 2173f6d58c54SBarry Smith } 2174f6d58c54SBarry Smith 2175f6d58c54SBarry Smith /* put in diagonal portion */ 2176f6d58c54SBarry Smith for (j=ad->i[i]; j<ad->i[i+1]; j++) { 2177f6d58c54SBarry Smith jsendbuf[cnt++] = A->rmap->rstart/bs + *a_jsendbuf++; 2178f6d58c54SBarry Smith } 2179f6d58c54SBarry Smith 2180f6d58c54SBarry Smith /* put in upper diagonal portion */ 2181f6d58c54SBarry Smith while (m-- > 0) { 2182f6d58c54SBarry Smith jsendbuf[cnt++] = garray[*b_jsendbuf++]; 2183f6d58c54SBarry Smith } 2184f6d58c54SBarry Smith } 2185e32f2f54SBarry Smith if (cnt != sendcount) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Corrupted PETSc matrix: nz given %D actual nz %D",sendcount,cnt); 2186f6d58c54SBarry Smith 2187f6d58c54SBarry Smith /*-------------------------------------------------------------------- 2188f6d58c54SBarry Smith Gather all column indices to all processors 2189f6d58c54SBarry Smith */ 2190f6d58c54SBarry Smith for (i=0; i<size; i++) { 2191f6d58c54SBarry Smith recvcounts[i] = 0; 2192f6d58c54SBarry Smith for (j=A->rmap->range[i]/bs; j<A->rmap->range[i+1]/bs; j++) { 2193f6d58c54SBarry Smith recvcounts[i] += lens[j]; 2194f6d58c54SBarry Smith } 2195f6d58c54SBarry Smith } 2196f6d58c54SBarry Smith displs[0] = 0; 2197f6d58c54SBarry Smith for (i=1; i<size; i++) { 2198f6d58c54SBarry Smith displs[i] = displs[i-1] + recvcounts[i-1]; 2199f6d58c54SBarry Smith } 2200f6d58c54SBarry Smith #if defined(PETSC_HAVE_MPI_IN_PLACE) 2201ce94432eSBarry Smith ierr = MPI_Allgatherv(MPI_IN_PLACE,0,MPI_DATATYPE_NULL,b->j,recvcounts,displs,MPIU_INT,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 2202f6d58c54SBarry Smith #else 2203ce94432eSBarry Smith ierr = MPI_Allgatherv(jsendbuf,sendcount,MPIU_INT,b->j,recvcounts,displs,MPIU_INT,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 2204f6d58c54SBarry Smith #endif 2205f6d58c54SBarry Smith /*-------------------------------------------------------------------- 2206f6d58c54SBarry Smith Assemble the matrix into useable form (note numerical values not yet set) 2207f6d58c54SBarry Smith */ 2208f6d58c54SBarry Smith /* set the b->ilen (length of each row) values */ 2209580bdb30SBarry Smith ierr = PetscArraycpy(b->ilen,lens,A->rmap->N/bs);CHKERRQ(ierr); 2210f6d58c54SBarry Smith /* set the b->i indices */ 2211f6d58c54SBarry Smith b->i[0] = 0; 2212f6d58c54SBarry Smith for (i=1; i<=A->rmap->N/bs; i++) { 2213f6d58c54SBarry Smith b->i[i] = b->i[i-1] + lens[i-1]; 2214f6d58c54SBarry Smith } 2215f6d58c54SBarry Smith ierr = PetscFree(lens);CHKERRQ(ierr); 2216f6d58c54SBarry Smith ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 2217f6d58c54SBarry Smith ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 2218f6d58c54SBarry Smith ierr = PetscFree(recvcounts);CHKERRQ(ierr); 2219f6d58c54SBarry Smith 2220f6d58c54SBarry Smith if (A->symmetric) { 2221f6d58c54SBarry Smith ierr = MatSetOption(B,MAT_SYMMETRIC,PETSC_TRUE);CHKERRQ(ierr); 2222f6d58c54SBarry Smith } else if (A->hermitian) { 2223f6d58c54SBarry Smith ierr = MatSetOption(B,MAT_HERMITIAN,PETSC_TRUE);CHKERRQ(ierr); 2224f6d58c54SBarry Smith } else if (A->structurally_symmetric) { 2225f6d58c54SBarry Smith ierr = MatSetOption(B,MAT_STRUCTURALLY_SYMMETRIC,PETSC_TRUE);CHKERRQ(ierr); 2226f6d58c54SBarry Smith } 2227f6d58c54SBarry Smith *newmat = B; 2228f6d58c54SBarry Smith PetscFunctionReturn(0); 2229f6d58c54SBarry Smith } 2230f6d58c54SBarry Smith 2231b1a666ecSBarry Smith PetscErrorCode MatSOR_MPIBAIJ(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx) 2232b1a666ecSBarry Smith { 2233b1a666ecSBarry Smith Mat_MPIBAIJ *mat = (Mat_MPIBAIJ*)matin->data; 2234b1a666ecSBarry Smith PetscErrorCode ierr; 2235b1a666ecSBarry Smith Vec bb1 = 0; 2236b1a666ecSBarry Smith 2237b1a666ecSBarry Smith PetscFunctionBegin; 2238b1a666ecSBarry Smith if (flag == SOR_APPLY_UPPER) { 2239b1a666ecSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr); 2240b1a666ecSBarry Smith PetscFunctionReturn(0); 2241b1a666ecSBarry Smith } 2242b1a666ecSBarry Smith 22434e980039SJed Brown if (its > 1 || ~flag & SOR_ZERO_INITIAL_GUESS) { 22444e980039SJed Brown ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr); 22454e980039SJed Brown } 22464e980039SJed Brown 2247b1a666ecSBarry Smith if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP) { 2248b1a666ecSBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 2249b1a666ecSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr); 2250b1a666ecSBarry Smith its--; 2251b1a666ecSBarry Smith } 2252b1a666ecSBarry Smith 2253b1a666ecSBarry Smith while (its--) { 2254b1a666ecSBarry Smith ierr = VecScatterBegin(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 2255b1a666ecSBarry Smith ierr = VecScatterEnd(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 2256b1a666ecSBarry Smith 2257b1a666ecSBarry Smith /* update rhs: bb1 = bb - B*x */ 2258b1a666ecSBarry Smith ierr = VecScale(mat->lvec,-1.0);CHKERRQ(ierr); 2259b1a666ecSBarry Smith ierr = (*mat->B->ops->multadd)(mat->B,mat->lvec,bb,bb1);CHKERRQ(ierr); 2260b1a666ecSBarry Smith 2261b1a666ecSBarry Smith /* local sweep */ 2262b1a666ecSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,1,xx);CHKERRQ(ierr); 2263b1a666ecSBarry Smith } 2264b1a666ecSBarry Smith } else if (flag & SOR_LOCAL_FORWARD_SWEEP) { 2265b1a666ecSBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 2266b1a666ecSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr); 2267b1a666ecSBarry Smith its--; 2268b1a666ecSBarry Smith } 2269b1a666ecSBarry Smith while (its--) { 2270b1a666ecSBarry Smith ierr = VecScatterBegin(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 2271b1a666ecSBarry Smith ierr = VecScatterEnd(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 2272b1a666ecSBarry Smith 2273b1a666ecSBarry Smith /* update rhs: bb1 = bb - B*x */ 2274b1a666ecSBarry Smith ierr = VecScale(mat->lvec,-1.0);CHKERRQ(ierr); 2275b1a666ecSBarry Smith ierr = (*mat->B->ops->multadd)(mat->B,mat->lvec,bb,bb1);CHKERRQ(ierr); 2276b1a666ecSBarry Smith 2277b1a666ecSBarry Smith /* local sweep */ 2278b1a666ecSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_FORWARD_SWEEP,fshift,lits,1,xx);CHKERRQ(ierr); 2279b1a666ecSBarry Smith } 2280b1a666ecSBarry Smith } else if (flag & SOR_LOCAL_BACKWARD_SWEEP) { 2281b1a666ecSBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 2282b1a666ecSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr); 2283b1a666ecSBarry Smith its--; 2284b1a666ecSBarry Smith } 2285b1a666ecSBarry Smith while (its--) { 2286b1a666ecSBarry Smith ierr = VecScatterBegin(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 2287b1a666ecSBarry Smith ierr = VecScatterEnd(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 2288b1a666ecSBarry Smith 2289b1a666ecSBarry Smith /* update rhs: bb1 = bb - B*x */ 2290b1a666ecSBarry Smith ierr = VecScale(mat->lvec,-1.0);CHKERRQ(ierr); 2291b1a666ecSBarry Smith ierr = (*mat->B->ops->multadd)(mat->B,mat->lvec,bb,bb1);CHKERRQ(ierr); 2292b1a666ecSBarry Smith 2293b1a666ecSBarry Smith /* local sweep */ 2294b1a666ecSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_BACKWARD_SWEEP,fshift,lits,1,xx);CHKERRQ(ierr); 2295b1a666ecSBarry Smith } 2296ce94432eSBarry Smith } else SETERRQ(PetscObjectComm((PetscObject)matin),PETSC_ERR_SUP,"Parallel version of SOR requested not supported"); 2297b1a666ecSBarry Smith 22986bf464f9SBarry Smith ierr = VecDestroy(&bb1);CHKERRQ(ierr); 2299b1a666ecSBarry Smith PetscFunctionReturn(0); 2300b1a666ecSBarry Smith } 2301b1a666ecSBarry Smith 230247f7623dSRémi Lacroix PetscErrorCode MatGetColumnNorms_MPIBAIJ(Mat A,NormType type,PetscReal *norms) 230347f7623dSRémi Lacroix { 230447f7623dSRémi Lacroix PetscErrorCode ierr; 230547f7623dSRémi Lacroix Mat_MPIBAIJ *aij = (Mat_MPIBAIJ*)A->data; 230647f7623dSRémi Lacroix PetscInt N,i,*garray = aij->garray; 230747f7623dSRémi Lacroix PetscInt ib,jb,bs = A->rmap->bs; 230847f7623dSRémi Lacroix Mat_SeqBAIJ *a_aij = (Mat_SeqBAIJ*) aij->A->data; 230947f7623dSRémi Lacroix MatScalar *a_val = a_aij->a; 231047f7623dSRémi Lacroix Mat_SeqBAIJ *b_aij = (Mat_SeqBAIJ*) aij->B->data; 231147f7623dSRémi Lacroix MatScalar *b_val = b_aij->a; 231247f7623dSRémi Lacroix PetscReal *work; 231347f7623dSRémi Lacroix 231447f7623dSRémi Lacroix PetscFunctionBegin; 231547f7623dSRémi Lacroix ierr = MatGetSize(A,NULL,&N);CHKERRQ(ierr); 23161795a4d1SJed Brown ierr = PetscCalloc1(N,&work);CHKERRQ(ierr); 231747f7623dSRémi Lacroix if (type == NORM_2) { 231847f7623dSRémi Lacroix for (i=a_aij->i[0]; i<a_aij->i[aij->A->rmap->n/bs]; i++) { 231947f7623dSRémi Lacroix for (jb=0; jb<bs; jb++) { 232047f7623dSRémi Lacroix for (ib=0; ib<bs; ib++) { 232147f7623dSRémi Lacroix work[A->cmap->rstart + a_aij->j[i] * bs + jb] += PetscAbsScalar(*a_val * *a_val); 232247f7623dSRémi Lacroix a_val++; 232347f7623dSRémi Lacroix } 232447f7623dSRémi Lacroix } 232547f7623dSRémi Lacroix } 232647f7623dSRémi Lacroix for (i=b_aij->i[0]; i<b_aij->i[aij->B->rmap->n/bs]; i++) { 232747f7623dSRémi Lacroix for (jb=0; jb<bs; jb++) { 232847f7623dSRémi Lacroix for (ib=0; ib<bs; ib++) { 232947f7623dSRémi Lacroix work[garray[b_aij->j[i]] * bs + jb] += PetscAbsScalar(*b_val * *b_val); 233047f7623dSRémi Lacroix b_val++; 233147f7623dSRémi Lacroix } 233247f7623dSRémi Lacroix } 233347f7623dSRémi Lacroix } 233447f7623dSRémi Lacroix } else if (type == NORM_1) { 233547f7623dSRémi Lacroix for (i=a_aij->i[0]; i<a_aij->i[aij->A->rmap->n/bs]; i++) { 233647f7623dSRémi Lacroix for (jb=0; jb<bs; jb++) { 233747f7623dSRémi Lacroix for (ib=0; ib<bs; ib++) { 233847f7623dSRémi Lacroix work[A->cmap->rstart + a_aij->j[i] * bs + jb] += PetscAbsScalar(*a_val); 233947f7623dSRémi Lacroix a_val++; 234047f7623dSRémi Lacroix } 234147f7623dSRémi Lacroix } 234247f7623dSRémi Lacroix } 234347f7623dSRémi Lacroix for (i=b_aij->i[0]; i<b_aij->i[aij->B->rmap->n/bs]; i++) { 234447f7623dSRémi Lacroix for (jb=0; jb<bs; jb++) { 234547f7623dSRémi Lacroix for (ib=0; ib<bs; ib++) { 234647f7623dSRémi Lacroix work[garray[b_aij->j[i]] * bs + jb] += PetscAbsScalar(*b_val); 234747f7623dSRémi Lacroix b_val++; 234847f7623dSRémi Lacroix } 234947f7623dSRémi Lacroix } 235047f7623dSRémi Lacroix } 235147f7623dSRémi Lacroix } else if (type == NORM_INFINITY) { 235247f7623dSRémi Lacroix for (i=a_aij->i[0]; i<a_aij->i[aij->A->rmap->n/bs]; i++) { 235347f7623dSRémi Lacroix for (jb=0; jb<bs; jb++) { 235447f7623dSRémi Lacroix for (ib=0; ib<bs; ib++) { 235547f7623dSRémi Lacroix int col = A->cmap->rstart + a_aij->j[i] * bs + jb; 235647f7623dSRémi Lacroix work[col] = PetscMax(PetscAbsScalar(*a_val), work[col]); 235747f7623dSRémi Lacroix a_val++; 235847f7623dSRémi Lacroix } 235947f7623dSRémi Lacroix } 236047f7623dSRémi Lacroix } 236147f7623dSRémi Lacroix for (i=b_aij->i[0]; i<b_aij->i[aij->B->rmap->n/bs]; i++) { 236247f7623dSRémi Lacroix for (jb=0; jb<bs; jb++) { 236347f7623dSRémi Lacroix for (ib=0; ib<bs; ib++) { 236447f7623dSRémi Lacroix int col = garray[b_aij->j[i]] * bs + jb; 236547f7623dSRémi Lacroix work[col] = PetscMax(PetscAbsScalar(*b_val), work[col]); 236647f7623dSRémi Lacroix b_val++; 236747f7623dSRémi Lacroix } 236847f7623dSRémi Lacroix } 236947f7623dSRémi Lacroix } 237047f7623dSRémi Lacroix } else SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ARG_WRONG,"Unknown NormType"); 237147f7623dSRémi Lacroix if (type == NORM_INFINITY) { 2372b2566f29SBarry Smith ierr = MPIU_Allreduce(work,norms,N,MPIU_REAL,MPIU_MAX,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 237347f7623dSRémi Lacroix } else { 2374b2566f29SBarry Smith ierr = MPIU_Allreduce(work,norms,N,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 237547f7623dSRémi Lacroix } 237647f7623dSRémi Lacroix ierr = PetscFree(work);CHKERRQ(ierr); 237747f7623dSRémi Lacroix if (type == NORM_2) { 237847f7623dSRémi Lacroix for (i=0; i<N; i++) norms[i] = PetscSqrtReal(norms[i]); 237947f7623dSRémi Lacroix } 238047f7623dSRémi Lacroix PetscFunctionReturn(0); 238147f7623dSRémi Lacroix } 238247f7623dSRémi Lacroix 2383713ccfa9SJed Brown PetscErrorCode MatInvertBlockDiagonal_MPIBAIJ(Mat A,const PetscScalar **values) 2384bbead8a2SBarry Smith { 2385bbead8a2SBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ*) A->data; 2386bbead8a2SBarry Smith PetscErrorCode ierr; 2387bbead8a2SBarry Smith 2388bbead8a2SBarry Smith PetscFunctionBegin; 2389bbead8a2SBarry Smith ierr = MatInvertBlockDiagonal(a->A,values);CHKERRQ(ierr); 23907b6c816cSBarry Smith A->factorerrortype = a->A->factorerrortype; 23917b6c816cSBarry Smith A->factorerror_zeropivot_value = a->A->factorerror_zeropivot_value; 23927b6c816cSBarry Smith A->factorerror_zeropivot_row = a->A->factorerror_zeropivot_row; 2393bbead8a2SBarry Smith PetscFunctionReturn(0); 2394bbead8a2SBarry Smith } 2395bbead8a2SBarry Smith 23967d68702bSBarry Smith PetscErrorCode MatShift_MPIBAIJ(Mat Y,PetscScalar a) 23977d68702bSBarry Smith { 23987d68702bSBarry Smith PetscErrorCode ierr; 23997d68702bSBarry Smith Mat_MPIBAIJ *maij = (Mat_MPIBAIJ*)Y->data; 24006f33a894SBarry Smith Mat_SeqBAIJ *aij = (Mat_SeqBAIJ*)maij->A->data; 24017d68702bSBarry Smith 24027d68702bSBarry Smith PetscFunctionBegin; 24036f33a894SBarry Smith if (!Y->preallocated) { 24047d68702bSBarry Smith ierr = MatMPIBAIJSetPreallocation(Y,Y->rmap->bs,1,NULL,0,NULL);CHKERRQ(ierr); 24056f33a894SBarry Smith } else if (!aij->nz) { 2406b83222d8SBarry Smith PetscInt nonew = aij->nonew; 24076f33a894SBarry Smith ierr = MatSeqBAIJSetPreallocation(maij->A,Y->rmap->bs,1,NULL);CHKERRQ(ierr); 2408b83222d8SBarry Smith aij->nonew = nonew; 24097d68702bSBarry Smith } 24107d68702bSBarry Smith ierr = MatShift_Basic(Y,a);CHKERRQ(ierr); 24117d68702bSBarry Smith PetscFunctionReturn(0); 24127d68702bSBarry Smith } 24138c7482ecSBarry Smith 24143b49f96aSBarry Smith PetscErrorCode MatMissingDiagonal_MPIBAIJ(Mat A,PetscBool *missing,PetscInt *d) 24153b49f96aSBarry Smith { 24163b49f96aSBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 24173b49f96aSBarry Smith PetscErrorCode ierr; 24183b49f96aSBarry Smith 24193b49f96aSBarry Smith PetscFunctionBegin; 24203b49f96aSBarry Smith if (A->rmap->n != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only works for square matrices"); 24213b49f96aSBarry Smith ierr = MatMissingDiagonal(a->A,missing,d);CHKERRQ(ierr); 24223b49f96aSBarry Smith if (d) { 24233b49f96aSBarry Smith PetscInt rstart; 24243b49f96aSBarry Smith ierr = MatGetOwnershipRange(A,&rstart,NULL);CHKERRQ(ierr); 24253b49f96aSBarry Smith *d += rstart/A->rmap->bs; 24263b49f96aSBarry Smith 24273b49f96aSBarry Smith } 24283b49f96aSBarry Smith PetscFunctionReturn(0); 24293b49f96aSBarry Smith } 24303b49f96aSBarry Smith 2431a5b7ff6bSBarry Smith PetscErrorCode MatGetDiagonalBlock_MPIBAIJ(Mat A,Mat *a) 2432a5b7ff6bSBarry Smith { 2433a5b7ff6bSBarry Smith PetscFunctionBegin; 2434a5b7ff6bSBarry Smith *a = ((Mat_MPIBAIJ*)A->data)->A; 2435a5b7ff6bSBarry Smith PetscFunctionReturn(0); 2436a5b7ff6bSBarry Smith } 2437a5b7ff6bSBarry Smith 243879bdfe76SSatish Balay /* -------------------------------------------------------------------*/ 24393964eb88SJed Brown static struct _MatOps MatOps_Values = {MatSetValues_MPIBAIJ, 2440cc2dc46cSBarry Smith MatGetRow_MPIBAIJ, 2441cc2dc46cSBarry Smith MatRestoreRow_MPIBAIJ, 2442cc2dc46cSBarry Smith MatMult_MPIBAIJ, 244397304618SKris Buschelman /* 4*/ MatMultAdd_MPIBAIJ, 24447c922b88SBarry Smith MatMultTranspose_MPIBAIJ, 24457c922b88SBarry Smith MatMultTransposeAdd_MPIBAIJ, 2446cc2dc46cSBarry Smith 0, 2447cc2dc46cSBarry Smith 0, 2448cc2dc46cSBarry Smith 0, 244997304618SKris Buschelman /*10*/ 0, 2450cc2dc46cSBarry Smith 0, 2451cc2dc46cSBarry Smith 0, 2452b1a666ecSBarry Smith MatSOR_MPIBAIJ, 2453cc2dc46cSBarry Smith MatTranspose_MPIBAIJ, 245497304618SKris Buschelman /*15*/ MatGetInfo_MPIBAIJ, 24557fc3c18eSBarry Smith MatEqual_MPIBAIJ, 2456cc2dc46cSBarry Smith MatGetDiagonal_MPIBAIJ, 2457cc2dc46cSBarry Smith MatDiagonalScale_MPIBAIJ, 2458cc2dc46cSBarry Smith MatNorm_MPIBAIJ, 245997304618SKris Buschelman /*20*/ MatAssemblyBegin_MPIBAIJ, 2460cc2dc46cSBarry Smith MatAssemblyEnd_MPIBAIJ, 2461cc2dc46cSBarry Smith MatSetOption_MPIBAIJ, 2462cc2dc46cSBarry Smith MatZeroEntries_MPIBAIJ, 2463d519adbfSMatthew Knepley /*24*/ MatZeroRows_MPIBAIJ, 2464cc2dc46cSBarry Smith 0, 2465cc2dc46cSBarry Smith 0, 2466cc2dc46cSBarry Smith 0, 2467cc2dc46cSBarry Smith 0, 24684994cf47SJed Brown /*29*/ MatSetUp_MPIBAIJ, 2469273d9f13SBarry Smith 0, 2470cc2dc46cSBarry Smith 0, 2471a5b7ff6bSBarry Smith MatGetDiagonalBlock_MPIBAIJ, 2472cc2dc46cSBarry Smith 0, 2473d519adbfSMatthew Knepley /*34*/ MatDuplicate_MPIBAIJ, 2474cc2dc46cSBarry Smith 0, 2475cc2dc46cSBarry Smith 0, 2476cc2dc46cSBarry Smith 0, 2477cc2dc46cSBarry Smith 0, 2478d519adbfSMatthew Knepley /*39*/ MatAXPY_MPIBAIJ, 24797dae84e0SHong Zhang MatCreateSubMatrices_MPIBAIJ, 2480cc2dc46cSBarry Smith MatIncreaseOverlap_MPIBAIJ, 2481cc2dc46cSBarry Smith MatGetValues_MPIBAIJ, 24823c896bc6SHong Zhang MatCopy_MPIBAIJ, 2483d519adbfSMatthew Knepley /*44*/ 0, 2484cc2dc46cSBarry Smith MatScale_MPIBAIJ, 24857d68702bSBarry Smith MatShift_MPIBAIJ, 2486cc2dc46cSBarry Smith 0, 24876f0a72daSMatthew G. Knepley MatZeroRowsColumns_MPIBAIJ, 2488f73d5cc4SBarry Smith /*49*/ 0, 2489cc2dc46cSBarry Smith 0, 2490cc2dc46cSBarry Smith 0, 2491cc2dc46cSBarry Smith 0, 2492cc2dc46cSBarry Smith 0, 249393dfae19SHong Zhang /*54*/ MatFDColoringCreate_MPIXAIJ, 2494cc2dc46cSBarry Smith 0, 2495cc2dc46cSBarry Smith MatSetUnfactored_MPIBAIJ, 249682094794SBarry Smith MatPermute_MPIBAIJ, 2497cc2dc46cSBarry Smith MatSetValuesBlocked_MPIBAIJ, 24987dae84e0SHong Zhang /*59*/ MatCreateSubMatrix_MPIBAIJ, 2499f14a1c24SBarry Smith MatDestroy_MPIBAIJ, 2500f14a1c24SBarry Smith MatView_MPIBAIJ, 2501357abbc8SBarry Smith 0, 25027843d17aSBarry Smith 0, 2503d519adbfSMatthew Knepley /*64*/ 0, 25047843d17aSBarry Smith 0, 25057843d17aSBarry Smith 0, 25067843d17aSBarry Smith 0, 25077843d17aSBarry Smith 0, 2508d519adbfSMatthew Knepley /*69*/ MatGetRowMaxAbs_MPIBAIJ, 25097843d17aSBarry Smith 0, 251097304618SKris Buschelman 0, 251197304618SKris Buschelman 0, 251297304618SKris Buschelman 0, 2513d519adbfSMatthew Knepley /*74*/ 0, 2514f6d58c54SBarry Smith MatFDColoringApply_BAIJ, 251597304618SKris Buschelman 0, 251697304618SKris Buschelman 0, 251797304618SKris Buschelman 0, 2518d519adbfSMatthew Knepley /*79*/ 0, 251997304618SKris Buschelman 0, 252097304618SKris Buschelman 0, 252197304618SKris Buschelman 0, 25225bba2384SShri Abhyankar MatLoad_MPIBAIJ, 2523d519adbfSMatthew Knepley /*84*/ 0, 2524865e5f61SKris Buschelman 0, 2525865e5f61SKris Buschelman 0, 2526865e5f61SKris Buschelman 0, 2527865e5f61SKris Buschelman 0, 2528d519adbfSMatthew Knepley /*89*/ 0, 2529865e5f61SKris Buschelman 0, 2530865e5f61SKris Buschelman 0, 2531865e5f61SKris Buschelman 0, 2532865e5f61SKris Buschelman 0, 2533d519adbfSMatthew Knepley /*94*/ 0, 2534865e5f61SKris Buschelman 0, 2535865e5f61SKris Buschelman 0, 253699cafbc1SBarry Smith 0, 253799cafbc1SBarry Smith 0, 2538d519adbfSMatthew Knepley /*99*/ 0, 253999cafbc1SBarry Smith 0, 254099cafbc1SBarry Smith 0, 254199cafbc1SBarry Smith 0, 254299cafbc1SBarry Smith 0, 2543d519adbfSMatthew Knepley /*104*/0, 254499cafbc1SBarry Smith MatRealPart_MPIBAIJ, 25458c7482ecSBarry Smith MatImaginaryPart_MPIBAIJ, 25468c7482ecSBarry Smith 0, 25478c7482ecSBarry Smith 0, 2548d519adbfSMatthew Knepley /*109*/0, 25498c7482ecSBarry Smith 0, 25508c7482ecSBarry Smith 0, 25518c7482ecSBarry Smith 0, 25523b49f96aSBarry Smith MatMissingDiagonal_MPIBAIJ, 2553d1adec66SJed Brown /*114*/MatGetSeqNonzeroStructure_MPIBAIJ, 25548c7482ecSBarry Smith 0, 25554683f7a4SShri Abhyankar MatGetGhosts_MPIBAIJ, 25564683f7a4SShri Abhyankar 0, 25574683f7a4SShri Abhyankar 0, 25584683f7a4SShri Abhyankar /*119*/0, 25594683f7a4SShri Abhyankar 0, 25604683f7a4SShri Abhyankar 0, 2561bbead8a2SBarry Smith 0, 2562e8271787SHong Zhang MatGetMultiProcBlock_MPIBAIJ, 2563bbead8a2SBarry Smith /*124*/0, 256447f7623dSRémi Lacroix MatGetColumnNorms_MPIBAIJ, 25653964eb88SJed Brown MatInvertBlockDiagonal_MPIBAIJ, 25663964eb88SJed Brown 0, 25673964eb88SJed Brown 0, 25683964eb88SJed Brown /*129*/ 0, 25693964eb88SJed Brown 0, 25703964eb88SJed Brown 0, 25713964eb88SJed Brown 0, 25723964eb88SJed Brown 0, 25733964eb88SJed Brown /*134*/ 0, 25743964eb88SJed Brown 0, 25753964eb88SJed Brown 0, 25763964eb88SJed Brown 0, 25773964eb88SJed Brown 0, 257846533700Sstefano_zampini /*139*/ MatSetBlockSizes_Default, 2579f9426fe0SMark Adams 0, 25801919a2e2SJed Brown 0, 2581bdf6f3fcSHong Zhang MatFDColoringSetUp_MPIXAIJ, 2582bdf6f3fcSHong Zhang 0, 2583bdf6f3fcSHong Zhang /*144*/MatCreateMPIMatConcatenateSeqMat_MPIBAIJ 25848c7482ecSBarry Smith }; 258579bdfe76SSatish Balay 258679bdfe76SSatish Balay 2587cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIBAIJ_MPISBAIJ(Mat,MatType,MatReuse,Mat*); 2588c9225affSStefano Zampini PETSC_INTERN PetscErrorCode MatConvert_XAIJ_IS(Mat,MatType,MatReuse,Mat*); 2589d94109b8SHong Zhang 2590cf12db73SBarry Smith PetscErrorCode MatMPIBAIJSetPreallocationCSR_MPIBAIJ(Mat B,PetscInt bs,const PetscInt ii[],const PetscInt jj[],const PetscScalar V[]) 2591aac34f13SBarry Smith { 2592b8d659d7SLisandro Dalcin PetscInt m,rstart,cstart,cend; 259337cd3c0dSBarry Smith PetscInt i,j,dlen,olen,nz,nz_max=0,*d_nnz=0,*o_nnz=0; 2594b8d659d7SLisandro Dalcin const PetscInt *JJ =0; 2595b8d659d7SLisandro Dalcin PetscScalar *values=0; 2596d47bf9aaSJed Brown PetscBool roworiented = ((Mat_MPIBAIJ*)B->data)->roworiented; 2597aac34f13SBarry Smith PetscErrorCode ierr; 25983bd0feecSPierre Jolivet PetscBool nooffprocentries; 2599aac34f13SBarry Smith 2600aac34f13SBarry Smith PetscFunctionBegin; 260126283091SBarry Smith ierr = PetscLayoutSetBlockSize(B->rmap,bs);CHKERRQ(ierr); 260226283091SBarry Smith ierr = PetscLayoutSetBlockSize(B->cmap,bs);CHKERRQ(ierr); 260326283091SBarry Smith ierr = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr); 260426283091SBarry Smith ierr = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr); 2605e02043d6SBarry Smith ierr = PetscLayoutGetBlockSize(B->rmap,&bs);CHKERRQ(ierr); 2606d0f46423SBarry Smith m = B->rmap->n/bs; 2607d0f46423SBarry Smith rstart = B->rmap->rstart/bs; 2608d0f46423SBarry Smith cstart = B->cmap->rstart/bs; 2609d0f46423SBarry Smith cend = B->cmap->rend/bs; 2610b8d659d7SLisandro Dalcin 2611e32f2f54SBarry Smith if (ii[0]) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"ii[0] must be 0 but it is %D",ii[0]); 2612dcca6d9dSJed Brown ierr = PetscMalloc2(m,&d_nnz,m,&o_nnz);CHKERRQ(ierr); 2613aac34f13SBarry Smith for (i=0; i<m; i++) { 2614cf12db73SBarry Smith nz = ii[i+1] - ii[i]; 2615e32f2f54SBarry Smith if (nz < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Local row %D has a negative number of columns %D",i,nz); 2616b8d659d7SLisandro Dalcin nz_max = PetscMax(nz_max,nz); 261737cd3c0dSBarry Smith dlen = 0; 261837cd3c0dSBarry Smith olen = 0; 2619cf12db73SBarry Smith JJ = jj + ii[i]; 2620b8d659d7SLisandro Dalcin for (j=0; j<nz; j++) { 262137cd3c0dSBarry Smith if (*JJ < cstart || *JJ >= cend) olen++; 262237cd3c0dSBarry Smith else dlen++; 2623aac34f13SBarry Smith JJ++; 2624aac34f13SBarry Smith } 262537cd3c0dSBarry Smith d_nnz[i] = dlen; 262637cd3c0dSBarry Smith o_nnz[i] = olen; 2627aac34f13SBarry Smith } 2628aac34f13SBarry Smith ierr = MatMPIBAIJSetPreallocation(B,bs,0,d_nnz,0,o_nnz);CHKERRQ(ierr); 2629fca92195SBarry Smith ierr = PetscFree2(d_nnz,o_nnz);CHKERRQ(ierr); 2630aac34f13SBarry Smith 2631b8d659d7SLisandro Dalcin values = (PetscScalar*)V; 2632b8d659d7SLisandro Dalcin if (!values) { 263337cd3c0dSBarry Smith ierr = PetscCalloc1(bs*bs*nz_max,&values);CHKERRQ(ierr); 2634b8d659d7SLisandro Dalcin } 2635b8d659d7SLisandro Dalcin for (i=0; i<m; i++) { 2636b8d659d7SLisandro Dalcin PetscInt row = i + rstart; 2637cf12db73SBarry Smith PetscInt ncols = ii[i+1] - ii[i]; 2638cf12db73SBarry Smith const PetscInt *icols = jj + ii[i]; 2639bb80cfbbSStefano Zampini if (bs == 1 || !roworiented) { /* block ordering matches the non-nested layout of MatSetValues so we can insert entire rows */ 2640cf12db73SBarry Smith const PetscScalar *svals = values + (V ? (bs*bs*ii[i]) : 0); 2641b8d659d7SLisandro Dalcin ierr = MatSetValuesBlocked_MPIBAIJ(B,1,&row,ncols,icols,svals,INSERT_VALUES);CHKERRQ(ierr); 26423adadaf3SJed Brown } else { /* block ordering does not match so we can only insert one block at a time. */ 26433adadaf3SJed Brown PetscInt j; 26443adadaf3SJed Brown for (j=0; j<ncols; j++) { 26453adadaf3SJed Brown const PetscScalar *svals = values + (V ? (bs*bs*(ii[i]+j)) : 0); 26463adadaf3SJed Brown ierr = MatSetValuesBlocked_MPIBAIJ(B,1,&row,1,&icols[j],svals,INSERT_VALUES);CHKERRQ(ierr); 26473adadaf3SJed Brown } 26483adadaf3SJed Brown } 2649aac34f13SBarry Smith } 2650aac34f13SBarry Smith 2651b8d659d7SLisandro Dalcin if (!V) { ierr = PetscFree(values);CHKERRQ(ierr); } 26523bd0feecSPierre Jolivet nooffprocentries = B->nooffprocentries; 26533bd0feecSPierre Jolivet B->nooffprocentries = PETSC_TRUE; 2654aac34f13SBarry Smith ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 2655aac34f13SBarry Smith ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 26563bd0feecSPierre Jolivet B->nooffprocentries = nooffprocentries; 26573bd0feecSPierre Jolivet 26587827cd58SJed Brown ierr = MatSetOption(B,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_TRUE);CHKERRQ(ierr); 2659aac34f13SBarry Smith PetscFunctionReturn(0); 2660aac34f13SBarry Smith } 2661aac34f13SBarry Smith 2662aac34f13SBarry Smith /*@C 2663664954b6SBarry Smith MatMPIBAIJSetPreallocationCSR - Creates a sparse parallel matrix in BAIJ format using the given nonzero structure and (optional) numerical values 2664aac34f13SBarry Smith 2665d083f849SBarry Smith Collective 2666aac34f13SBarry Smith 2667aac34f13SBarry Smith Input Parameters: 26681c4f3114SJed Brown + B - the matrix 2669dfb205c3SBarry Smith . bs - the block size 2670aac34f13SBarry Smith . i - the indices into j for the start of each local row (starts with zero) 2671aac34f13SBarry Smith . j - the column indices for each local row (starts with zero) these must be sorted for each row 2672aac34f13SBarry Smith - v - optional values in the matrix 2673aac34f13SBarry Smith 2674664954b6SBarry Smith Level: advanced 2675aac34f13SBarry Smith 267695452b02SPatrick Sanan Notes: 267795452b02SPatrick Sanan The order of the entries in values is specified by the MatOption MAT_ROW_ORIENTED. For example, C programs 26783adadaf3SJed Brown may want to use the default MAT_ROW_ORIENTED=PETSC_TRUE and use an array v[nnz][bs][bs] where the second index is 26793adadaf3SJed Brown over rows within a block and the last index is over columns within a block row. Fortran programs will likely set 26803adadaf3SJed Brown MAT_ROW_ORIENTED=PETSC_FALSE and use a Fortran array v(bs,bs,nnz) in which the first index is over rows within a 26813adadaf3SJed Brown block column and the second index is over columns within a block. 26823adadaf3SJed Brown 2683664954b6SBarry Smith Though this routine has Preallocation() in the name it also sets the exact nonzero locations of the matrix entries and usually the numerical values as well 2684664954b6SBarry Smith 26853adadaf3SJed Brown .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatMPIBAIJSetPreallocation(), MatCreateAIJ(), MPIAIJ, MatCreateMPIBAIJWithArrays(), MPIBAIJ 2686aac34f13SBarry Smith @*/ 26877087cfbeSBarry Smith PetscErrorCode MatMPIBAIJSetPreallocationCSR(Mat B,PetscInt bs,const PetscInt i[],const PetscInt j[], const PetscScalar v[]) 2688aac34f13SBarry Smith { 26894ac538c5SBarry Smith PetscErrorCode ierr; 2690aac34f13SBarry Smith 2691aac34f13SBarry Smith PetscFunctionBegin; 26926ba663aaSJed Brown PetscValidHeaderSpecific(B,MAT_CLASSID,1); 26936ba663aaSJed Brown PetscValidType(B,1); 26946ba663aaSJed Brown PetscValidLogicalCollectiveInt(B,bs,2); 26954ac538c5SBarry Smith ierr = PetscTryMethod(B,"MatMPIBAIJSetPreallocationCSR_C",(Mat,PetscInt,const PetscInt[],const PetscInt[],const PetscScalar[]),(B,bs,i,j,v));CHKERRQ(ierr); 2696aac34f13SBarry Smith PetscFunctionReturn(0); 2697aac34f13SBarry Smith } 2698aac34f13SBarry Smith 2699b2573a8aSBarry Smith PetscErrorCode MatMPIBAIJSetPreallocation_MPIBAIJ(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt *d_nnz,PetscInt o_nz,const PetscInt *o_nnz) 2700a23d5eceSKris Buschelman { 2701a23d5eceSKris Buschelman Mat_MPIBAIJ *b; 2702dfbe8321SBarry Smith PetscErrorCode ierr; 2703535b19f3SBarry Smith PetscInt i; 27045d2a9ed1SStefano Zampini PetscMPIInt size; 2705a23d5eceSKris Buschelman 2706a23d5eceSKris Buschelman PetscFunctionBegin; 270733d57670SJed Brown ierr = MatSetBlockSize(B,PetscAbs(bs));CHKERRQ(ierr); 270826283091SBarry Smith ierr = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr); 270926283091SBarry Smith ierr = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr); 2710e02043d6SBarry Smith ierr = PetscLayoutGetBlockSize(B->rmap,&bs);CHKERRQ(ierr); 2711899cda47SBarry Smith 2712a23d5eceSKris Buschelman if (d_nnz) { 2713d0f46423SBarry Smith for (i=0; i<B->rmap->n/bs; i++) { 2714e32f2f54SBarry Smith if (d_nnz[i] < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"d_nnz cannot be less than -1: local row %D value %D",i,d_nnz[i]); 2715a23d5eceSKris Buschelman } 2716a23d5eceSKris Buschelman } 2717a23d5eceSKris Buschelman if (o_nnz) { 2718d0f46423SBarry Smith for (i=0; i<B->rmap->n/bs; i++) { 2719e32f2f54SBarry Smith if (o_nnz[i] < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"o_nnz cannot be less than -1: local row %D value %D",i,o_nnz[i]); 2720a23d5eceSKris Buschelman } 2721a23d5eceSKris Buschelman } 2722a23d5eceSKris Buschelman 2723a23d5eceSKris Buschelman b = (Mat_MPIBAIJ*)B->data; 2724a23d5eceSKris Buschelman b->bs2 = bs*bs; 2725d0f46423SBarry Smith b->mbs = B->rmap->n/bs; 2726d0f46423SBarry Smith b->nbs = B->cmap->n/bs; 2727d0f46423SBarry Smith b->Mbs = B->rmap->N/bs; 2728d0f46423SBarry Smith b->Nbs = B->cmap->N/bs; 2729a23d5eceSKris Buschelman 2730a23d5eceSKris Buschelman for (i=0; i<=b->size; i++) { 2731d0f46423SBarry Smith b->rangebs[i] = B->rmap->range[i]/bs; 2732a23d5eceSKris Buschelman } 2733d0f46423SBarry Smith b->rstartbs = B->rmap->rstart/bs; 2734d0f46423SBarry Smith b->rendbs = B->rmap->rend/bs; 2735d0f46423SBarry Smith b->cstartbs = B->cmap->rstart/bs; 2736d0f46423SBarry Smith b->cendbs = B->cmap->rend/bs; 2737a23d5eceSKris Buschelman 2738cb7b82ddSBarry Smith #if defined(PETSC_USE_CTABLE) 2739cb7b82ddSBarry Smith ierr = PetscTableDestroy(&b->colmap);CHKERRQ(ierr); 2740cb7b82ddSBarry Smith #else 2741cb7b82ddSBarry Smith ierr = PetscFree(b->colmap);CHKERRQ(ierr); 2742cb7b82ddSBarry Smith #endif 2743cb7b82ddSBarry Smith ierr = PetscFree(b->garray);CHKERRQ(ierr); 2744cb7b82ddSBarry Smith ierr = VecDestroy(&b->lvec);CHKERRQ(ierr); 2745cb7b82ddSBarry Smith ierr = VecScatterDestroy(&b->Mvctx);CHKERRQ(ierr); 2746cb7b82ddSBarry Smith 2747cb7b82ddSBarry Smith /* Because the B will have been resized we simply destroy it and create a new one each time */ 27485d2a9ed1SStefano Zampini ierr = MPI_Comm_size(PetscObjectComm((PetscObject)B),&size);CHKERRQ(ierr); 2749cb7b82ddSBarry Smith ierr = MatDestroy(&b->B);CHKERRQ(ierr); 2750cb7b82ddSBarry Smith ierr = MatCreate(PETSC_COMM_SELF,&b->B);CHKERRQ(ierr); 27515d2a9ed1SStefano Zampini ierr = MatSetSizes(b->B,B->rmap->n,size > 1 ? B->cmap->N : 0,B->rmap->n,size > 1 ? B->cmap->N : 0);CHKERRQ(ierr); 2752cb7b82ddSBarry Smith ierr = MatSetType(b->B,MATSEQBAIJ);CHKERRQ(ierr); 2753cb7b82ddSBarry Smith ierr = PetscLogObjectParent((PetscObject)B,(PetscObject)b->B);CHKERRQ(ierr); 2754cb7b82ddSBarry Smith 2755526dfc15SBarry Smith if (!B->preallocated) { 2756f69a0ea3SMatthew Knepley ierr = MatCreate(PETSC_COMM_SELF,&b->A);CHKERRQ(ierr); 2757d0f46423SBarry Smith ierr = MatSetSizes(b->A,B->rmap->n,B->cmap->n,B->rmap->n,B->cmap->n);CHKERRQ(ierr); 27589c097c71SKris Buschelman ierr = MatSetType(b->A,MATSEQBAIJ);CHKERRQ(ierr); 27593bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)B,(PetscObject)b->A);CHKERRQ(ierr); 2760ce94432eSBarry Smith ierr = MatStashCreate_Private(PetscObjectComm((PetscObject)B),bs,&B->bstash);CHKERRQ(ierr); 2761526dfc15SBarry Smith } 2762a23d5eceSKris Buschelman 2763526dfc15SBarry Smith ierr = MatSeqBAIJSetPreallocation(b->A,bs,d_nz,d_nnz);CHKERRQ(ierr); 2764526dfc15SBarry Smith ierr = MatSeqBAIJSetPreallocation(b->B,bs,o_nz,o_nnz);CHKERRQ(ierr); 2765526dfc15SBarry Smith B->preallocated = PETSC_TRUE; 2766cb7b82ddSBarry Smith B->was_assembled = PETSC_FALSE; 2767cb7b82ddSBarry Smith B->assembled = PETSC_FALSE; 2768a23d5eceSKris Buschelman PetscFunctionReturn(0); 2769a23d5eceSKris Buschelman } 2770a23d5eceSKris Buschelman 27717087cfbeSBarry Smith extern PetscErrorCode MatDiagonalScaleLocal_MPIBAIJ(Mat,Vec); 27727087cfbeSBarry Smith extern PetscErrorCode MatSetHashTableFactor_MPIBAIJ(Mat,PetscReal); 27735bf65638SKris Buschelman 2774cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIBAIJ_MPIAdj(Mat B, MatType newtype,MatReuse reuse,Mat *adj) 277582094794SBarry Smith { 277682094794SBarry Smith Mat_MPIBAIJ *b = (Mat_MPIBAIJ*)B->data; 277782094794SBarry Smith PetscErrorCode ierr; 277882094794SBarry Smith Mat_SeqBAIJ *d = (Mat_SeqBAIJ*) b->A->data,*o = (Mat_SeqBAIJ*) b->B->data; 277982094794SBarry Smith PetscInt M = B->rmap->n/B->rmap->bs,i,*ii,*jj,cnt,j,k,rstart = B->rmap->rstart/B->rmap->bs; 278082094794SBarry Smith const PetscInt *id = d->i, *jd = d->j, *io = o->i, *jo = o->j, *garray = b->garray; 278182094794SBarry Smith 278282094794SBarry Smith PetscFunctionBegin; 2783854ce69bSBarry Smith ierr = PetscMalloc1(M+1,&ii);CHKERRQ(ierr); 278482094794SBarry Smith ii[0] = 0; 278582094794SBarry Smith for (i=0; i<M; i++) { 2786e32f2f54SBarry Smith if ((id[i+1] - id[i]) < 0) SETERRQ3(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Indices wrong %D %D %D",i,id[i],id[i+1]); 2787e32f2f54SBarry Smith if ((io[i+1] - io[i]) < 0) SETERRQ3(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Indices wrong %D %D %D",i,io[i],io[i+1]); 278882094794SBarry Smith ii[i+1] = ii[i] + id[i+1] - id[i] + io[i+1] - io[i]; 27895ee9ba1cSJed Brown /* remove one from count of matrix has diagonal */ 27905ee9ba1cSJed Brown for (j=id[i]; j<id[i+1]; j++) { 27915ee9ba1cSJed Brown if (jd[j] == i) {ii[i+1]--;break;} 27925ee9ba1cSJed Brown } 279382094794SBarry Smith } 2794785e854fSJed Brown ierr = PetscMalloc1(ii[M],&jj);CHKERRQ(ierr); 279582094794SBarry Smith cnt = 0; 279682094794SBarry Smith for (i=0; i<M; i++) { 279782094794SBarry Smith for (j=io[i]; j<io[i+1]; j++) { 279882094794SBarry Smith if (garray[jo[j]] > rstart) break; 279982094794SBarry Smith jj[cnt++] = garray[jo[j]]; 280082094794SBarry Smith } 280182094794SBarry Smith for (k=id[i]; k<id[i+1]; k++) { 28025ee9ba1cSJed Brown if (jd[k] != i) { 280382094794SBarry Smith jj[cnt++] = rstart + jd[k]; 280482094794SBarry Smith } 28055ee9ba1cSJed Brown } 280682094794SBarry Smith for (; j<io[i+1]; j++) { 280782094794SBarry Smith jj[cnt++] = garray[jo[j]]; 280882094794SBarry Smith } 280982094794SBarry Smith } 2810ce94432eSBarry Smith ierr = MatCreateMPIAdj(PetscObjectComm((PetscObject)B),M,B->cmap->N/B->rmap->bs,ii,jj,NULL,adj);CHKERRQ(ierr); 281182094794SBarry Smith PetscFunctionReturn(0); 281282094794SBarry Smith } 281382094794SBarry Smith 2814c6db04a5SJed Brown #include <../src/mat/impls/aij/mpi/mpiaij.h> 281562471d69SBarry Smith 2816cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_SeqBAIJ_SeqAIJ(Mat,MatType,MatReuse,Mat*); 2817b2573a8aSBarry Smith 2818cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIBAIJ_MPIAIJ(Mat A,MatType newtype,MatReuse reuse,Mat *newmat) 281962471d69SBarry Smith { 282062471d69SBarry Smith PetscErrorCode ierr; 282162471d69SBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 282262471d69SBarry Smith Mat B; 282385a69837SSatish Balay Mat_MPIAIJ *b; 282462471d69SBarry Smith 282562471d69SBarry Smith PetscFunctionBegin; 2826ce94432eSBarry Smith if (!A->assembled) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_SUP,"Matrix must be assembled"); 282762471d69SBarry Smith 28280f6d62edSLisandro Dalcin if (reuse == MAT_REUSE_MATRIX) { 28290f6d62edSLisandro Dalcin B = *newmat; 28300f6d62edSLisandro Dalcin } else { 2831ce94432eSBarry Smith ierr = MatCreate(PetscObjectComm((PetscObject)A),&B);CHKERRQ(ierr); 28326d0a4a0eSHong Zhang ierr = MatSetType(B,MATMPIAIJ);CHKERRQ(ierr); 2833f090d951SRémi Lacroix ierr = MatSetSizes(B,A->rmap->n,A->cmap->n,A->rmap->N,A->cmap->N);CHKERRQ(ierr); 2834f090d951SRémi Lacroix ierr = MatSetBlockSizes(B,A->rmap->bs,A->cmap->bs);CHKERRQ(ierr); 28350298fd71SBarry Smith ierr = MatSeqAIJSetPreallocation(B,0,NULL);CHKERRQ(ierr); 28360298fd71SBarry Smith ierr = MatMPIAIJSetPreallocation(B,0,NULL,0,NULL);CHKERRQ(ierr); 28370f6d62edSLisandro Dalcin } 283862471d69SBarry Smith b = (Mat_MPIAIJ*) B->data; 283962471d69SBarry Smith 28400f6d62edSLisandro Dalcin if (reuse == MAT_REUSE_MATRIX) { 28410f6d62edSLisandro Dalcin ierr = MatConvert_SeqBAIJ_SeqAIJ(a->A, MATSEQAIJ, MAT_REUSE_MATRIX, &b->A);CHKERRQ(ierr); 28420f6d62edSLisandro Dalcin ierr = MatConvert_SeqBAIJ_SeqAIJ(a->B, MATSEQAIJ, MAT_REUSE_MATRIX, &b->B);CHKERRQ(ierr); 28430f6d62edSLisandro Dalcin } else { 28446bf464f9SBarry Smith ierr = MatDestroy(&b->A);CHKERRQ(ierr); 28456bf464f9SBarry Smith ierr = MatDestroy(&b->B);CHKERRQ(ierr); 2846ab9863d7SBarry Smith ierr = MatDisAssemble_MPIBAIJ(A);CHKERRQ(ierr); 284762471d69SBarry Smith ierr = MatConvert_SeqBAIJ_SeqAIJ(a->A, MATSEQAIJ, MAT_INITIAL_MATRIX, &b->A);CHKERRQ(ierr); 284862471d69SBarry Smith ierr = MatConvert_SeqBAIJ_SeqAIJ(a->B, MATSEQAIJ, MAT_INITIAL_MATRIX, &b->B);CHKERRQ(ierr); 28496a719282SBarry Smith ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 28506a719282SBarry Smith ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 28510f6d62edSLisandro Dalcin } 28520f6d62edSLisandro Dalcin ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 28530f6d62edSLisandro Dalcin ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 28540f6d62edSLisandro Dalcin 2855511c6705SHong Zhang if (reuse == MAT_INPLACE_MATRIX) { 285628be2f97SBarry Smith ierr = MatHeaderReplace(A,&B);CHKERRQ(ierr); 285762471d69SBarry Smith } else { 285862471d69SBarry Smith *newmat = B; 285962471d69SBarry Smith } 286062471d69SBarry Smith PetscFunctionReturn(0); 286162471d69SBarry Smith } 286262471d69SBarry Smith 28630bad9183SKris Buschelman /*MC 2864fafad747SKris Buschelman MATMPIBAIJ - MATMPIBAIJ = "mpibaij" - A matrix type to be used for distributed block sparse matrices. 28650bad9183SKris Buschelman 28660bad9183SKris Buschelman Options Database Keys: 28678c07d4e3SBarry Smith + -mat_type mpibaij - sets the matrix type to "mpibaij" during a call to MatSetFromOptions() 28688c07d4e3SBarry Smith . -mat_block_size <bs> - set the blocksize used to store the matrix 28698c07d4e3SBarry Smith - -mat_use_hash_table <fact> 28700bad9183SKris Buschelman 28710bad9183SKris Buschelman Level: beginner 28720cd7f59aSBarry Smith 28730cd7f59aSBarry Smith Notes: 28740cd7f59aSBarry Smith MatSetOptions(,MAT_STRUCTURE_ONLY,PETSC_TRUE) may be called for this matrix type. In this no 28750cd7f59aSBarry Smith space is allocated for the nonzero entries and any entries passed with MatSetValues() are ignored 28760bad9183SKris Buschelman 2877fd292e60Sprj- .seealso: MatCreateBAIJ 28780bad9183SKris Buschelman M*/ 28790bad9183SKris Buschelman 2880cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIBAIJ_MPIBSTRM(Mat,MatType,MatReuse,Mat*); 2881c0cdd4a1SDahai Guo 28828cc058d9SJed Brown PETSC_EXTERN PetscErrorCode MatCreate_MPIBAIJ(Mat B) 2883273d9f13SBarry Smith { 2884273d9f13SBarry Smith Mat_MPIBAIJ *b; 2885dfbe8321SBarry Smith PetscErrorCode ierr; 288694ae4db5SBarry Smith PetscBool flg = PETSC_FALSE; 2887273d9f13SBarry Smith 2888273d9f13SBarry Smith PetscFunctionBegin; 2889b00a9115SJed Brown ierr = PetscNewLog(B,&b);CHKERRQ(ierr); 289082502324SSatish Balay B->data = (void*)b; 289182502324SSatish Balay 2892273d9f13SBarry Smith ierr = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr); 2893273d9f13SBarry Smith B->assembled = PETSC_FALSE; 2894273d9f13SBarry Smith 2895273d9f13SBarry Smith B->insertmode = NOT_SET_VALUES; 2896ce94432eSBarry Smith ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)B),&b->rank);CHKERRQ(ierr); 2897ce94432eSBarry Smith ierr = MPI_Comm_size(PetscObjectComm((PetscObject)B),&b->size);CHKERRQ(ierr); 2898273d9f13SBarry Smith 2899273d9f13SBarry Smith /* build local table of row and column ownerships */ 2900854ce69bSBarry Smith ierr = PetscMalloc1(b->size+1,&b->rangebs);CHKERRQ(ierr); 2901273d9f13SBarry Smith 2902273d9f13SBarry Smith /* build cache for off array entries formed */ 2903ce94432eSBarry Smith ierr = MatStashCreate_Private(PetscObjectComm((PetscObject)B),1,&B->stash);CHKERRQ(ierr); 290426fbe8dcSKarl Rupp 2905273d9f13SBarry Smith b->donotstash = PETSC_FALSE; 29060298fd71SBarry Smith b->colmap = NULL; 29070298fd71SBarry Smith b->garray = NULL; 2908273d9f13SBarry Smith b->roworiented = PETSC_TRUE; 2909273d9f13SBarry Smith 2910273d9f13SBarry Smith /* stuff used in block assembly */ 2911273d9f13SBarry Smith b->barray = 0; 2912273d9f13SBarry Smith 2913273d9f13SBarry Smith /* stuff used for matrix vector multiply */ 2914273d9f13SBarry Smith b->lvec = 0; 2915273d9f13SBarry Smith b->Mvctx = 0; 2916273d9f13SBarry Smith 2917273d9f13SBarry Smith /* stuff for MatGetRow() */ 2918273d9f13SBarry Smith b->rowindices = 0; 2919273d9f13SBarry Smith b->rowvalues = 0; 2920273d9f13SBarry Smith b->getrowactive = PETSC_FALSE; 2921273d9f13SBarry Smith 2922273d9f13SBarry Smith /* hash table stuff */ 2923273d9f13SBarry Smith b->ht = 0; 2924273d9f13SBarry Smith b->hd = 0; 2925273d9f13SBarry Smith b->ht_size = 0; 2926273d9f13SBarry Smith b->ht_flag = PETSC_FALSE; 2927273d9f13SBarry Smith b->ht_fact = 0; 2928273d9f13SBarry Smith b->ht_total_ct = 0; 2929273d9f13SBarry Smith b->ht_insert_ct = 0; 2930273d9f13SBarry Smith 29317dae84e0SHong Zhang /* stuff for MatCreateSubMatrices_MPIBAIJ_local() */ 29327a868f3eSHong Zhang b->ijonly = PETSC_FALSE; 29337a868f3eSHong Zhang 29348c07d4e3SBarry Smith 2935bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpibaij_mpiadj_C",MatConvert_MPIBAIJ_MPIAdj);CHKERRQ(ierr); 2936bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpibaij_mpiaij_C",MatConvert_MPIBAIJ_MPIAIJ);CHKERRQ(ierr); 2937bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpibaij_mpisbaij_C",MatConvert_MPIBAIJ_MPISBAIJ);CHKERRQ(ierr); 29387ea3e4caSstefano_zampini #if defined(PETSC_HAVE_HYPRE) 29397ea3e4caSstefano_zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpibaij_hypre_C",MatConvert_AIJ_HYPRE);CHKERRQ(ierr); 29407ea3e4caSstefano_zampini #endif 2941bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatStoreValues_C",MatStoreValues_MPIBAIJ);CHKERRQ(ierr); 2942bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatRetrieveValues_C",MatRetrieveValues_MPIBAIJ);CHKERRQ(ierr); 2943bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatMPIBAIJSetPreallocation_C",MatMPIBAIJSetPreallocation_MPIBAIJ);CHKERRQ(ierr); 2944bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatMPIBAIJSetPreallocationCSR_C",MatMPIBAIJSetPreallocationCSR_MPIBAIJ);CHKERRQ(ierr); 2945bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatDiagonalScaleLocal_C",MatDiagonalScaleLocal_MPIBAIJ);CHKERRQ(ierr); 2946bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatSetHashTableFactor_C",MatSetHashTableFactor_MPIBAIJ);CHKERRQ(ierr); 2947c9225affSStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpibaij_is_C",MatConvert_XAIJ_IS);CHKERRQ(ierr); 294817667f90SBarry Smith ierr = PetscObjectChangeTypeName((PetscObject)B,MATMPIBAIJ);CHKERRQ(ierr); 294994ae4db5SBarry Smith 295094ae4db5SBarry Smith ierr = PetscOptionsBegin(PetscObjectComm((PetscObject)B),NULL,"Options for loading MPIBAIJ matrix 1","Mat");CHKERRQ(ierr); 2951abf3b562SBarry Smith ierr = PetscOptionsName("-mat_use_hash_table","Use hash table to save time in constructing matrix","MatSetOption",&flg);CHKERRQ(ierr); 295294ae4db5SBarry Smith if (flg) { 295394ae4db5SBarry Smith PetscReal fact = 1.39; 295494ae4db5SBarry Smith ierr = MatSetOption(B,MAT_USE_HASH_TABLE,PETSC_TRUE);CHKERRQ(ierr); 295594ae4db5SBarry Smith ierr = PetscOptionsReal("-mat_use_hash_table","Use hash table factor","MatMPIBAIJSetHashTableFactor",fact,&fact,NULL);CHKERRQ(ierr); 295694ae4db5SBarry Smith if (fact <= 1.0) fact = 1.39; 295794ae4db5SBarry Smith ierr = MatMPIBAIJSetHashTableFactor(B,fact);CHKERRQ(ierr); 295894ae4db5SBarry Smith ierr = PetscInfo1(B,"Hash table Factor used %5.2f\n",fact);CHKERRQ(ierr); 295994ae4db5SBarry Smith } 296094ae4db5SBarry Smith ierr = PetscOptionsEnd();CHKERRQ(ierr); 2961273d9f13SBarry Smith PetscFunctionReturn(0); 2962273d9f13SBarry Smith } 2963273d9f13SBarry Smith 2964209238afSKris Buschelman /*MC 2965002d173eSKris Buschelman MATBAIJ - MATBAIJ = "baij" - A matrix type to be used for block sparse matrices. 2966209238afSKris Buschelman 2967209238afSKris Buschelman This matrix type is identical to MATSEQBAIJ when constructed with a single process communicator, 2968209238afSKris Buschelman and MATMPIBAIJ otherwise. 2969209238afSKris Buschelman 2970209238afSKris Buschelman Options Database Keys: 2971209238afSKris Buschelman . -mat_type baij - sets the matrix type to "baij" during a call to MatSetFromOptions() 2972209238afSKris Buschelman 2973209238afSKris Buschelman Level: beginner 2974209238afSKris Buschelman 297569b1f4b7SBarry Smith .seealso: MatCreateBAIJ(),MATSEQBAIJ,MATMPIBAIJ, MatMPIBAIJSetPreallocation(), MatMPIBAIJSetPreallocationCSR() 2976209238afSKris Buschelman M*/ 2977209238afSKris Buschelman 2978273d9f13SBarry Smith /*@C 2979aac34f13SBarry Smith MatMPIBAIJSetPreallocation - Allocates memory for a sparse parallel matrix in block AIJ format 2980273d9f13SBarry Smith (block compressed row). For good matrix assembly performance 2981273d9f13SBarry Smith the user should preallocate the matrix storage by setting the parameters 2982273d9f13SBarry Smith d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 2983273d9f13SBarry Smith performance can be increased by more than a factor of 50. 2984273d9f13SBarry Smith 2985273d9f13SBarry Smith Collective on Mat 2986273d9f13SBarry Smith 2987273d9f13SBarry Smith Input Parameters: 29881c4f3114SJed Brown + B - the matrix 2989bb7ae925SBarry Smith . bs - size of block, the blocks are ALWAYS square. One can use MatSetBlockSizes() to set a different row and column blocksize but the row 2990bb7ae925SBarry Smith blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with MatCreateVecs() 2991273d9f13SBarry Smith . d_nz - number of block nonzeros per block row in diagonal portion of local 2992273d9f13SBarry Smith submatrix (same for all local rows) 2993273d9f13SBarry Smith . d_nnz - array containing the number of block nonzeros in the various block rows 2994273d9f13SBarry Smith of the in diagonal portion of the local (possibly different for each block 29950298fd71SBarry Smith row) or NULL. If you plan to factor the matrix you must leave room for the diagonal entry and 299695742e49SBarry Smith set it even if it is zero. 2997273d9f13SBarry Smith . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 2998273d9f13SBarry Smith submatrix (same for all local rows). 2999273d9f13SBarry Smith - o_nnz - array containing the number of nonzeros in the various block rows of the 3000273d9f13SBarry Smith off-diagonal portion of the local submatrix (possibly different for 30010298fd71SBarry Smith each block row) or NULL. 3002273d9f13SBarry Smith 300349a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 3004273d9f13SBarry Smith 3005273d9f13SBarry Smith Options Database Keys: 30068c07d4e3SBarry Smith + -mat_block_size - size of the blocks to use 30078c07d4e3SBarry Smith - -mat_use_hash_table <fact> 3008273d9f13SBarry Smith 3009273d9f13SBarry Smith Notes: 3010273d9f13SBarry Smith If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one processor 3011273d9f13SBarry Smith than it must be used on all processors that share the object for that argument. 3012273d9f13SBarry Smith 3013273d9f13SBarry Smith Storage Information: 3014273d9f13SBarry Smith For a square global matrix we define each processor's diagonal portion 3015273d9f13SBarry Smith to be its local rows and the corresponding columns (a square submatrix); 3016273d9f13SBarry Smith each processor's off-diagonal portion encompasses the remainder of the 3017273d9f13SBarry Smith local matrix (a rectangular submatrix). 3018273d9f13SBarry Smith 3019273d9f13SBarry Smith The user can specify preallocated storage for the diagonal part of 3020273d9f13SBarry Smith the local submatrix with either d_nz or d_nnz (not both). Set 30210298fd71SBarry Smith d_nz=PETSC_DEFAULT and d_nnz=NULL for PETSc to control dynamic 3022273d9f13SBarry Smith memory allocation. Likewise, specify preallocated storage for the 3023273d9f13SBarry Smith off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 3024273d9f13SBarry Smith 3025273d9f13SBarry Smith Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 3026273d9f13SBarry Smith the figure below we depict these three local rows and all columns (0-11). 3027273d9f13SBarry Smith 3028273d9f13SBarry Smith .vb 3029273d9f13SBarry Smith 0 1 2 3 4 5 6 7 8 9 10 11 3030a4b1a0f6SJed Brown -------------------------- 3031273d9f13SBarry Smith row 3 |o o o d d d o o o o o o 3032273d9f13SBarry Smith row 4 |o o o d d d o o o o o o 3033273d9f13SBarry Smith row 5 |o o o d d d o o o o o o 3034a4b1a0f6SJed Brown -------------------------- 3035273d9f13SBarry Smith .ve 3036273d9f13SBarry Smith 3037273d9f13SBarry Smith Thus, any entries in the d locations are stored in the d (diagonal) 3038273d9f13SBarry Smith submatrix, and any entries in the o locations are stored in the 3039273d9f13SBarry Smith o (off-diagonal) submatrix. Note that the d and the o submatrices are 3040273d9f13SBarry Smith stored simply in the MATSEQBAIJ format for compressed row storage. 3041273d9f13SBarry Smith 3042273d9f13SBarry Smith Now d_nz should indicate the number of block nonzeros per row in the d matrix, 3043273d9f13SBarry Smith and o_nz should indicate the number of block nonzeros per row in the o matrix. 3044273d9f13SBarry Smith In general, for PDE problems in which most nonzeros are near the diagonal, 3045273d9f13SBarry Smith one expects d_nz >> o_nz. For large problems you MUST preallocate memory 3046273d9f13SBarry Smith or you will get TERRIBLE performance; see the users' manual chapter on 3047273d9f13SBarry Smith matrices. 3048273d9f13SBarry Smith 3049aa95bbe8SBarry Smith You can call MatGetInfo() to get information on how effective the preallocation was; 3050aa95bbe8SBarry Smith for example the fields mallocs,nz_allocated,nz_used,nz_unneeded; 3051aa95bbe8SBarry Smith You can also run with the option -info and look for messages with the string 3052aa95bbe8SBarry Smith malloc in them to see if additional memory allocation was needed. 3053aa95bbe8SBarry Smith 3054273d9f13SBarry Smith Level: intermediate 3055273d9f13SBarry Smith 3056ab978733SBarry Smith .seealso: MatCreate(), MatCreateSeqBAIJ(), MatSetValues(), MatCreateBAIJ(), MatMPIBAIJSetPreallocationCSR(), PetscSplitOwnership() 3057273d9f13SBarry Smith @*/ 30587087cfbeSBarry Smith PetscErrorCode MatMPIBAIJSetPreallocation(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[]) 3059273d9f13SBarry Smith { 30604ac538c5SBarry Smith PetscErrorCode ierr; 3061273d9f13SBarry Smith 3062273d9f13SBarry Smith PetscFunctionBegin; 30636ba663aaSJed Brown PetscValidHeaderSpecific(B,MAT_CLASSID,1); 30646ba663aaSJed Brown PetscValidType(B,1); 30656ba663aaSJed Brown PetscValidLogicalCollectiveInt(B,bs,2); 30664ac538c5SBarry Smith ierr = PetscTryMethod(B,"MatMPIBAIJSetPreallocation_C",(Mat,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[]),(B,bs,d_nz,d_nnz,o_nz,o_nnz));CHKERRQ(ierr); 3067273d9f13SBarry Smith PetscFunctionReturn(0); 3068273d9f13SBarry Smith } 3069273d9f13SBarry Smith 307079bdfe76SSatish Balay /*@C 307169b1f4b7SBarry Smith MatCreateBAIJ - Creates a sparse parallel matrix in block AIJ format 307279bdfe76SSatish Balay (block compressed row). For good matrix assembly performance 307379bdfe76SSatish Balay the user should preallocate the matrix storage by setting the parameters 307479bdfe76SSatish Balay d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 307579bdfe76SSatish Balay performance can be increased by more than a factor of 50. 307679bdfe76SSatish Balay 3077d083f849SBarry Smith Collective 3078db81eaa0SLois Curfman McInnes 307979bdfe76SSatish Balay Input Parameters: 3080db81eaa0SLois Curfman McInnes + comm - MPI communicator 3081bb7ae925SBarry Smith . bs - size of block, the blocks are ALWAYS square. One can use MatSetBlockSizes() to set a different row and column blocksize but the row 3082bb7ae925SBarry Smith blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with MatCreateVecs() 308379bdfe76SSatish Balay . m - number of local rows (or PETSC_DECIDE to have calculated if M is given) 308492e8d321SLois Curfman McInnes This value should be the same as the local size used in creating the 308592e8d321SLois Curfman McInnes y vector for the matrix-vector product y = Ax. 308692e8d321SLois Curfman McInnes . n - number of local columns (or PETSC_DECIDE to have calculated if N is given) 308792e8d321SLois Curfman McInnes This value should be the same as the local size used in creating the 308892e8d321SLois Curfman McInnes x vector for the matrix-vector product y = Ax. 3089be79a94dSBarry Smith . M - number of global rows (or PETSC_DETERMINE to have calculated if m is given) 3090be79a94dSBarry Smith . N - number of global columns (or PETSC_DETERMINE to have calculated if n is given) 309147a75d0bSBarry Smith . d_nz - number of nonzero blocks per block row in diagonal portion of local 309279bdfe76SSatish Balay submatrix (same for all local rows) 309347a75d0bSBarry Smith . d_nnz - array containing the number of nonzero blocks in the various block rows 309492e8d321SLois Curfman McInnes of the in diagonal portion of the local (possibly different for each block 30950298fd71SBarry Smith row) or NULL. If you plan to factor the matrix you must leave room for the diagonal entry 309695742e49SBarry Smith and set it even if it is zero. 309747a75d0bSBarry Smith . o_nz - number of nonzero blocks per block row in the off-diagonal portion of local 309879bdfe76SSatish Balay submatrix (same for all local rows). 309947a75d0bSBarry Smith - o_nnz - array containing the number of nonzero blocks in the various block rows of the 310092e8d321SLois Curfman McInnes off-diagonal portion of the local submatrix (possibly different for 31010298fd71SBarry Smith each block row) or NULL. 310279bdfe76SSatish Balay 310379bdfe76SSatish Balay Output Parameter: 310479bdfe76SSatish Balay . A - the matrix 310579bdfe76SSatish Balay 3106db81eaa0SLois Curfman McInnes Options Database Keys: 31078c07d4e3SBarry Smith + -mat_block_size - size of the blocks to use 31088c07d4e3SBarry Smith - -mat_use_hash_table <fact> 31093ffaccefSLois Curfman McInnes 3110175b88e8SBarry Smith It is recommended that one use the MatCreate(), MatSetType() and/or MatSetFromOptions(), 3111f6f02116SRichard Tran Mills MatXXXXSetPreallocation() paradigm instead of this routine directly. 3112175b88e8SBarry Smith [MatXXXXSetPreallocation() is, for example, MatSeqAIJSetPreallocation] 3113175b88e8SBarry Smith 3114b259b22eSLois Curfman McInnes Notes: 311549a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 311649a6f317SBarry Smith 311747a75d0bSBarry Smith A nonzero block is any block that as 1 or more nonzeros in it 311847a75d0bSBarry Smith 311979bdfe76SSatish Balay The user MUST specify either the local or global matrix dimensions 312079bdfe76SSatish Balay (possibly both). 312179bdfe76SSatish Balay 3122be79a94dSBarry Smith If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one processor 3123be79a94dSBarry Smith than it must be used on all processors that share the object for that argument. 3124be79a94dSBarry Smith 312579bdfe76SSatish Balay Storage Information: 312679bdfe76SSatish Balay For a square global matrix we define each processor's diagonal portion 312779bdfe76SSatish Balay to be its local rows and the corresponding columns (a square submatrix); 312879bdfe76SSatish Balay each processor's off-diagonal portion encompasses the remainder of the 312979bdfe76SSatish Balay local matrix (a rectangular submatrix). 313079bdfe76SSatish Balay 313179bdfe76SSatish Balay The user can specify preallocated storage for the diagonal part of 313279bdfe76SSatish Balay the local submatrix with either d_nz or d_nnz (not both). Set 31330298fd71SBarry Smith d_nz=PETSC_DEFAULT and d_nnz=NULL for PETSc to control dynamic 313479bdfe76SSatish Balay memory allocation. Likewise, specify preallocated storage for the 313579bdfe76SSatish Balay off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 313679bdfe76SSatish Balay 313779bdfe76SSatish Balay Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 313879bdfe76SSatish Balay the figure below we depict these three local rows and all columns (0-11). 313979bdfe76SSatish Balay 3140db81eaa0SLois Curfman McInnes .vb 3141db81eaa0SLois Curfman McInnes 0 1 2 3 4 5 6 7 8 9 10 11 3142a4b1a0f6SJed Brown -------------------------- 3143db81eaa0SLois Curfman McInnes row 3 |o o o d d d o o o o o o 3144db81eaa0SLois Curfman McInnes row 4 |o o o d d d o o o o o o 3145db81eaa0SLois Curfman McInnes row 5 |o o o d d d o o o o o o 3146a4b1a0f6SJed Brown -------------------------- 3147db81eaa0SLois Curfman McInnes .ve 314879bdfe76SSatish Balay 314979bdfe76SSatish Balay Thus, any entries in the d locations are stored in the d (diagonal) 315079bdfe76SSatish Balay submatrix, and any entries in the o locations are stored in the 315179bdfe76SSatish Balay o (off-diagonal) submatrix. Note that the d and the o submatrices are 315257b952d6SSatish Balay stored simply in the MATSEQBAIJ format for compressed row storage. 315379bdfe76SSatish Balay 3154d64ed03dSBarry Smith Now d_nz should indicate the number of block nonzeros per row in the d matrix, 3155d64ed03dSBarry Smith and o_nz should indicate the number of block nonzeros per row in the o matrix. 315679bdfe76SSatish Balay In general, for PDE problems in which most nonzeros are near the diagonal, 315792e8d321SLois Curfman McInnes one expects d_nz >> o_nz. For large problems you MUST preallocate memory 315892e8d321SLois Curfman McInnes or you will get TERRIBLE performance; see the users' manual chapter on 31596da5968aSLois Curfman McInnes matrices. 316079bdfe76SSatish Balay 3161027ccd11SLois Curfman McInnes Level: intermediate 3162027ccd11SLois Curfman McInnes 316369b1f4b7SBarry Smith .seealso: MatCreate(), MatCreateSeqBAIJ(), MatSetValues(), MatCreateBAIJ(), MatMPIBAIJSetPreallocation(), MatMPIBAIJSetPreallocationCSR() 316479bdfe76SSatish Balay @*/ 316569b1f4b7SBarry Smith PetscErrorCode MatCreateBAIJ(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[],Mat *A) 316679bdfe76SSatish Balay { 31676849ba73SBarry Smith PetscErrorCode ierr; 3168b24ad042SBarry Smith PetscMPIInt size; 316979bdfe76SSatish Balay 3170d64ed03dSBarry Smith PetscFunctionBegin; 3171f69a0ea3SMatthew Knepley ierr = MatCreate(comm,A);CHKERRQ(ierr); 3172f69a0ea3SMatthew Knepley ierr = MatSetSizes(*A,m,n,M,N);CHKERRQ(ierr); 3173d132466eSBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 3174273d9f13SBarry Smith if (size > 1) { 3175273d9f13SBarry Smith ierr = MatSetType(*A,MATMPIBAIJ);CHKERRQ(ierr); 3176273d9f13SBarry Smith ierr = MatMPIBAIJSetPreallocation(*A,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr); 3177273d9f13SBarry Smith } else { 3178273d9f13SBarry Smith ierr = MatSetType(*A,MATSEQBAIJ);CHKERRQ(ierr); 3179273d9f13SBarry Smith ierr = MatSeqBAIJSetPreallocation(*A,bs,d_nz,d_nnz);CHKERRQ(ierr); 31803914022bSBarry Smith } 31813a40ed3dSBarry Smith PetscFunctionReturn(0); 318279bdfe76SSatish Balay } 3183026e39d0SSatish Balay 31846849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIBAIJ(Mat matin,MatDuplicateOption cpvalues,Mat *newmat) 31850ac07820SSatish Balay { 31860ac07820SSatish Balay Mat mat; 31870ac07820SSatish Balay Mat_MPIBAIJ *a,*oldmat = (Mat_MPIBAIJ*)matin->data; 3188dfbe8321SBarry Smith PetscErrorCode ierr; 3189b24ad042SBarry Smith PetscInt len=0; 31900ac07820SSatish Balay 3191d64ed03dSBarry Smith PetscFunctionBegin; 31920ac07820SSatish Balay *newmat = 0; 3193ce94432eSBarry Smith ierr = MatCreate(PetscObjectComm((PetscObject)matin),&mat);CHKERRQ(ierr); 3194d0f46423SBarry Smith ierr = MatSetSizes(mat,matin->rmap->n,matin->cmap->n,matin->rmap->N,matin->cmap->N);CHKERRQ(ierr); 31957adad957SLisandro Dalcin ierr = MatSetType(mat,((PetscObject)matin)->type_name);CHKERRQ(ierr); 31967fff6886SHong Zhang 3197d5f3da31SBarry Smith mat->factortype = matin->factortype; 3198273d9f13SBarry Smith mat->preallocated = PETSC_TRUE; 31990ac07820SSatish Balay mat->assembled = PETSC_TRUE; 32007fff6886SHong Zhang mat->insertmode = NOT_SET_VALUES; 32017fff6886SHong Zhang 3202273d9f13SBarry Smith a = (Mat_MPIBAIJ*)mat->data; 3203d0f46423SBarry Smith mat->rmap->bs = matin->rmap->bs; 32040ac07820SSatish Balay a->bs2 = oldmat->bs2; 32050ac07820SSatish Balay a->mbs = oldmat->mbs; 32060ac07820SSatish Balay a->nbs = oldmat->nbs; 32070ac07820SSatish Balay a->Mbs = oldmat->Mbs; 32080ac07820SSatish Balay a->Nbs = oldmat->Nbs; 32090ac07820SSatish Balay 32101e1e43feSBarry Smith ierr = PetscLayoutReference(matin->rmap,&mat->rmap);CHKERRQ(ierr); 32111e1e43feSBarry Smith ierr = PetscLayoutReference(matin->cmap,&mat->cmap);CHKERRQ(ierr); 3212899cda47SBarry Smith 32130ac07820SSatish Balay a->size = oldmat->size; 32140ac07820SSatish Balay a->rank = oldmat->rank; 3215aef5e8e0SSatish Balay a->donotstash = oldmat->donotstash; 3216aef5e8e0SSatish Balay a->roworiented = oldmat->roworiented; 3217aef5e8e0SSatish Balay a->rowindices = 0; 32180ac07820SSatish Balay a->rowvalues = 0; 32190ac07820SSatish Balay a->getrowactive = PETSC_FALSE; 322030793edcSSatish Balay a->barray = 0; 3221899cda47SBarry Smith a->rstartbs = oldmat->rstartbs; 3222899cda47SBarry Smith a->rendbs = oldmat->rendbs; 3223899cda47SBarry Smith a->cstartbs = oldmat->cstartbs; 3224899cda47SBarry Smith a->cendbs = oldmat->cendbs; 32250ac07820SSatish Balay 3226133cdb44SSatish Balay /* hash table stuff */ 3227133cdb44SSatish Balay a->ht = 0; 3228133cdb44SSatish Balay a->hd = 0; 3229133cdb44SSatish Balay a->ht_size = 0; 3230133cdb44SSatish Balay a->ht_flag = oldmat->ht_flag; 323125fdafccSSatish Balay a->ht_fact = oldmat->ht_fact; 3232133cdb44SSatish Balay a->ht_total_ct = 0; 3233133cdb44SSatish Balay a->ht_insert_ct = 0; 3234133cdb44SSatish Balay 3235580bdb30SBarry Smith ierr = PetscArraycpy(a->rangebs,oldmat->rangebs,a->size+1);CHKERRQ(ierr); 32360ac07820SSatish Balay if (oldmat->colmap) { 3237aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 32380f5bd95cSBarry Smith ierr = PetscTableCreateCopy(oldmat->colmap,&a->colmap);CHKERRQ(ierr); 323948e59246SSatish Balay #else 3240854ce69bSBarry Smith ierr = PetscMalloc1(a->Nbs,&a->colmap);CHKERRQ(ierr); 32413bb1ff40SBarry Smith ierr = PetscLogObjectMemory((PetscObject)mat,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr); 3242580bdb30SBarry Smith ierr = PetscArraycpy(a->colmap,oldmat->colmap,a->Nbs);CHKERRQ(ierr); 324348e59246SSatish Balay #endif 32440ac07820SSatish Balay } else a->colmap = 0; 32454beb1cfeSHong Zhang 32460ac07820SSatish Balay if (oldmat->garray && (len = ((Mat_SeqBAIJ*)(oldmat->B->data))->nbs)) { 3247785e854fSJed Brown ierr = PetscMalloc1(len,&a->garray);CHKERRQ(ierr); 32483bb1ff40SBarry Smith ierr = PetscLogObjectMemory((PetscObject)mat,len*sizeof(PetscInt));CHKERRQ(ierr); 3249580bdb30SBarry Smith ierr = PetscArraycpy(a->garray,oldmat->garray,len);CHKERRQ(ierr); 32500ac07820SSatish Balay } else a->garray = 0; 32510ac07820SSatish Balay 3252ce94432eSBarry Smith ierr = MatStashCreate_Private(PetscObjectComm((PetscObject)matin),matin->rmap->bs,&mat->bstash);CHKERRQ(ierr); 32530ac07820SSatish Balay ierr = VecDuplicate(oldmat->lvec,&a->lvec);CHKERRQ(ierr); 32543bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->lvec);CHKERRQ(ierr); 32550ac07820SSatish Balay ierr = VecScatterCopy(oldmat->Mvctx,&a->Mvctx);CHKERRQ(ierr); 32563bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->Mvctx);CHKERRQ(ierr); 32577fff6886SHong Zhang 32582e8a6d31SBarry Smith ierr = MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr); 32593bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->A);CHKERRQ(ierr); 32602e8a6d31SBarry Smith ierr = MatDuplicate(oldmat->B,cpvalues,&a->B);CHKERRQ(ierr); 32613bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->B);CHKERRQ(ierr); 3262140e18c1SBarry Smith ierr = PetscFunctionListDuplicate(((PetscObject)matin)->qlist,&((PetscObject)mat)->qlist);CHKERRQ(ierr); 32630ac07820SSatish Balay *newmat = mat; 32643a40ed3dSBarry Smith PetscFunctionReturn(0); 32650ac07820SSatish Balay } 326657b952d6SSatish Balay 3267618cc2edSLisandro Dalcin /* Used for both MPIBAIJ and MPISBAIJ matrices */ 3268b51a4376SLisandro Dalcin PetscErrorCode MatLoad_MPIBAIJ_Binary(Mat mat,PetscViewer viewer) 3269b51a4376SLisandro Dalcin { 3270b51a4376SLisandro Dalcin PetscInt header[4],M,N,nz,bs,m,n,mbs,nbs,rows,cols,sum,i,j,k; 3271b51a4376SLisandro Dalcin PetscInt *rowidxs,*colidxs,rs,cs,ce; 3272b51a4376SLisandro Dalcin PetscScalar *matvals; 3273b51a4376SLisandro Dalcin PetscErrorCode ierr; 3274b51a4376SLisandro Dalcin 3275b51a4376SLisandro Dalcin PetscFunctionBegin; 3276b51a4376SLisandro Dalcin ierr = PetscViewerSetUp(viewer);CHKERRQ(ierr); 3277b51a4376SLisandro Dalcin 3278b51a4376SLisandro Dalcin /* read in matrix header */ 3279b51a4376SLisandro Dalcin ierr = PetscViewerBinaryRead(viewer,header,4,NULL,PETSC_INT);CHKERRQ(ierr); 3280b51a4376SLisandro Dalcin if (header[0] != MAT_FILE_CLASSID) SETERRQ(PetscObjectComm((PetscObject)viewer),PETSC_ERR_FILE_UNEXPECTED,"Not a matrix object in file"); 3281b51a4376SLisandro Dalcin M = header[1]; N = header[2]; nz = header[3]; 3282b51a4376SLisandro Dalcin if (M < 0) SETERRQ1(PetscObjectComm((PetscObject)viewer),PETSC_ERR_FILE_UNEXPECTED,"Matrix row size (%D) in file is negative",M); 3283b51a4376SLisandro Dalcin if (N < 0) SETERRQ1(PetscObjectComm((PetscObject)viewer),PETSC_ERR_FILE_UNEXPECTED,"Matrix column size (%D) in file is negative",N); 3284b51a4376SLisandro Dalcin if (nz < 0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"Matrix stored in special format on disk, cannot load as MPIBAIJ"); 3285b51a4376SLisandro Dalcin 3286b51a4376SLisandro Dalcin /* set block sizes from the viewer's .info file */ 3287b51a4376SLisandro Dalcin ierr = MatLoad_Binary_BlockSizes(mat,viewer);CHKERRQ(ierr); 3288618cc2edSLisandro Dalcin /* set local sizes if not set already */ 3289618cc2edSLisandro Dalcin if (mat->rmap->n < 0 && M == N) mat->rmap->n = mat->cmap->n; 3290618cc2edSLisandro Dalcin if (mat->cmap->n < 0 && M == N) mat->cmap->n = mat->rmap->n; 3291b51a4376SLisandro Dalcin /* set global sizes if not set already */ 3292b51a4376SLisandro Dalcin if (mat->rmap->N < 0) mat->rmap->N = M; 3293b51a4376SLisandro Dalcin if (mat->cmap->N < 0) mat->cmap->N = N; 3294b51a4376SLisandro Dalcin ierr = PetscLayoutSetUp(mat->rmap);CHKERRQ(ierr); 3295b51a4376SLisandro Dalcin ierr = PetscLayoutSetUp(mat->cmap);CHKERRQ(ierr); 3296b51a4376SLisandro Dalcin 3297b51a4376SLisandro Dalcin /* check if the matrix sizes are correct */ 3298b51a4376SLisandro Dalcin ierr = MatGetSize(mat,&rows,&cols);CHKERRQ(ierr); 3299b51a4376SLisandro Dalcin if (M != rows || N != cols) SETERRQ4(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED, "Matrix in file of different sizes (%D, %D) than the input matrix (%D, %D)",M,N,rows,cols); 3300b51a4376SLisandro Dalcin ierr = MatGetBlockSize(mat,&bs);CHKERRQ(ierr); 3301b51a4376SLisandro Dalcin ierr = MatGetLocalSize(mat,&m,&n);CHKERRQ(ierr); 3302b51a4376SLisandro Dalcin ierr = PetscLayoutGetRange(mat->rmap,&rs,NULL); 3303b51a4376SLisandro Dalcin ierr = PetscLayoutGetRange(mat->cmap,&cs,&ce); 3304b51a4376SLisandro Dalcin mbs = m/bs; nbs = n/bs; 3305b51a4376SLisandro Dalcin 3306b51a4376SLisandro Dalcin /* read in row lengths and build row indices */ 3307b51a4376SLisandro Dalcin ierr = PetscMalloc1(m+1,&rowidxs);CHKERRQ(ierr); 3308b51a4376SLisandro Dalcin ierr = PetscViewerBinaryReadAll(viewer,rowidxs+1,m,PETSC_DECIDE,M,PETSC_INT);CHKERRQ(ierr); 3309b51a4376SLisandro Dalcin rowidxs[0] = 0; for (i=0; i<m; i++) rowidxs[i+1] += rowidxs[i]; 3310b51a4376SLisandro Dalcin ierr = MPIU_Allreduce(&rowidxs[m],&sum,1,MPIU_INT,MPI_SUM,PetscObjectComm((PetscObject)viewer));CHKERRQ(ierr); 3311b51a4376SLisandro Dalcin if (sum != nz) SETERRQ2(PetscObjectComm((PetscObject)viewer),PETSC_ERR_FILE_UNEXPECTED,"Inconsistent matrix data in file: nonzeros = %D, sum-row-lengths = %D\n",nz,sum); 3312b51a4376SLisandro Dalcin 3313b51a4376SLisandro Dalcin /* read in column indices and matrix values */ 3314b51a4376SLisandro Dalcin ierr = PetscMalloc2(rowidxs[m],&colidxs,rowidxs[m],&matvals);CHKERRQ(ierr); 3315b51a4376SLisandro Dalcin ierr = PetscViewerBinaryReadAll(viewer,colidxs,rowidxs[m],PETSC_DETERMINE,PETSC_DETERMINE,PETSC_INT);CHKERRQ(ierr); 3316b51a4376SLisandro Dalcin ierr = PetscViewerBinaryReadAll(viewer,matvals,rowidxs[m],PETSC_DETERMINE,PETSC_DETERMINE,PETSC_SCALAR);CHKERRQ(ierr); 3317b51a4376SLisandro Dalcin 3318b51a4376SLisandro Dalcin { /* preallocate matrix storage */ 3319b51a4376SLisandro Dalcin PetscBT bt; /* helper bit set to count diagonal nonzeros */ 3320b51a4376SLisandro Dalcin PetscHSetI ht; /* helper hash set to count off-diagonal nonzeros */ 3321618cc2edSLisandro Dalcin PetscBool sbaij,done; 3322b51a4376SLisandro Dalcin PetscInt *d_nnz,*o_nnz; 3323b51a4376SLisandro Dalcin 3324b51a4376SLisandro Dalcin ierr = PetscBTCreate(nbs,&bt);CHKERRQ(ierr); 3325b51a4376SLisandro Dalcin ierr = PetscHSetICreate(&ht);CHKERRQ(ierr); 3326b51a4376SLisandro Dalcin ierr = PetscCalloc2(mbs,&d_nnz,mbs,&o_nnz);CHKERRQ(ierr); 3327618cc2edSLisandro Dalcin ierr = PetscObjectTypeCompare((PetscObject)mat,MATMPISBAIJ,&sbaij);CHKERRQ(ierr); 3328b51a4376SLisandro Dalcin for (i=0; i<mbs; i++) { 3329b51a4376SLisandro Dalcin ierr = PetscBTMemzero(nbs,bt);CHKERRQ(ierr); 3330b51a4376SLisandro Dalcin ierr = PetscHSetIClear(ht);CHKERRQ(ierr); 3331618cc2edSLisandro Dalcin for (k=0; k<bs; k++) { 3332618cc2edSLisandro Dalcin PetscInt row = bs*i + k; 3333618cc2edSLisandro Dalcin for (j=rowidxs[row]; j<rowidxs[row+1]; j++) { 3334618cc2edSLisandro Dalcin PetscInt col = colidxs[j]; 3335618cc2edSLisandro Dalcin if (!sbaij || col >= row) { 3336618cc2edSLisandro Dalcin if (col >= cs && col < ce) { 3337618cc2edSLisandro Dalcin if (!PetscBTLookupSet(bt,(col-cs)/bs)) d_nnz[i]++; 3338b51a4376SLisandro Dalcin } else { 3339618cc2edSLisandro Dalcin ierr = PetscHSetIQueryAdd(ht,col/bs,&done);CHKERRQ(ierr); 3340b51a4376SLisandro Dalcin if (done) o_nnz[i]++; 3341b51a4376SLisandro Dalcin } 3342b51a4376SLisandro Dalcin } 3343618cc2edSLisandro Dalcin } 3344618cc2edSLisandro Dalcin } 3345618cc2edSLisandro Dalcin } 3346b51a4376SLisandro Dalcin ierr = PetscBTDestroy(&bt);CHKERRQ(ierr); 3347b51a4376SLisandro Dalcin ierr = PetscHSetIDestroy(&ht);CHKERRQ(ierr); 3348b51a4376SLisandro Dalcin ierr = MatMPIBAIJSetPreallocation(mat,bs,0,d_nnz,0,o_nnz);CHKERRQ(ierr); 3349618cc2edSLisandro Dalcin ierr = MatMPISBAIJSetPreallocation(mat,bs,0,d_nnz,0,o_nnz);CHKERRQ(ierr); 3350b51a4376SLisandro Dalcin ierr = PetscFree2(d_nnz,o_nnz);CHKERRQ(ierr); 3351b51a4376SLisandro Dalcin } 3352b51a4376SLisandro Dalcin 3353b51a4376SLisandro Dalcin /* store matrix values */ 3354b51a4376SLisandro Dalcin for (i=0; i<m; i++) { 3355b51a4376SLisandro Dalcin PetscInt row = rs + i, s = rowidxs[i], e = rowidxs[i+1]; 3356618cc2edSLisandro Dalcin ierr = (*mat->ops->setvalues)(mat,1,&row,e-s,colidxs+s,matvals+s,INSERT_VALUES);CHKERRQ(ierr); 3357b51a4376SLisandro Dalcin } 3358b51a4376SLisandro Dalcin 3359b51a4376SLisandro Dalcin ierr = PetscFree(rowidxs);CHKERRQ(ierr); 3360b51a4376SLisandro Dalcin ierr = PetscFree2(colidxs,matvals);CHKERRQ(ierr); 3361b51a4376SLisandro Dalcin ierr = MatAssemblyBegin(mat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 3362b51a4376SLisandro Dalcin ierr = MatAssemblyEnd(mat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 3363b51a4376SLisandro Dalcin PetscFunctionReturn(0); 3364b51a4376SLisandro Dalcin } 3365b51a4376SLisandro Dalcin 3366b51a4376SLisandro Dalcin PetscErrorCode MatLoad_MPIBAIJ(Mat mat,PetscViewer viewer) 33674683f7a4SShri Abhyankar { 33684683f7a4SShri Abhyankar PetscErrorCode ierr; 33697f489da9SVaclav Hapla PetscBool isbinary; 33704683f7a4SShri Abhyankar 33714683f7a4SShri Abhyankar PetscFunctionBegin; 33727f489da9SVaclav Hapla ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary);CHKERRQ(ierr); 3373b51a4376SLisandro Dalcin if (!isbinary) SETERRQ2(PetscObjectComm((PetscObject)viewer),PETSC_ERR_SUP,"Viewer type %s not yet supported for reading %s matrices",((PetscObject)viewer)->type_name,((PetscObject)mat)->type_name); 3374b51a4376SLisandro Dalcin ierr = MatLoad_MPIBAIJ_Binary(mat,viewer);CHKERRQ(ierr); 33754683f7a4SShri Abhyankar PetscFunctionReturn(0); 33764683f7a4SShri Abhyankar } 33774683f7a4SShri Abhyankar 3378133cdb44SSatish Balay /*@ 3379133cdb44SSatish Balay MatMPIBAIJSetHashTableFactor - Sets the factor required to compute the size of the HashTable. 3380133cdb44SSatish Balay 3381133cdb44SSatish Balay Input Parameters: 3382a2b725a8SWilliam Gropp + mat - the matrix 3383a2b725a8SWilliam Gropp - fact - factor 3384133cdb44SSatish Balay 3385c5eb9154SBarry Smith Not Collective, each process can use a different factor 3386fee21e36SBarry Smith 33878c890885SBarry Smith Level: advanced 33888c890885SBarry Smith 3389133cdb44SSatish Balay Notes: 33908c07d4e3SBarry Smith This can also be set by the command line option: -mat_use_hash_table <fact> 3391133cdb44SSatish Balay 3392133cdb44SSatish Balay .seealso: MatSetOption() 3393133cdb44SSatish Balay @*/ 33947087cfbeSBarry Smith PetscErrorCode MatMPIBAIJSetHashTableFactor(Mat mat,PetscReal fact) 3395133cdb44SSatish Balay { 33964ac538c5SBarry Smith PetscErrorCode ierr; 33975bf65638SKris Buschelman 33985bf65638SKris Buschelman PetscFunctionBegin; 33994ac538c5SBarry Smith ierr = PetscTryMethod(mat,"MatSetHashTableFactor_C",(Mat,PetscReal),(mat,fact));CHKERRQ(ierr); 34005bf65638SKris Buschelman PetscFunctionReturn(0); 34015bf65638SKris Buschelman } 34025bf65638SKris Buschelman 34037087cfbeSBarry Smith PetscErrorCode MatSetHashTableFactor_MPIBAIJ(Mat mat,PetscReal fact) 34045bf65638SKris Buschelman { 340525fdafccSSatish Balay Mat_MPIBAIJ *baij; 3406133cdb44SSatish Balay 3407133cdb44SSatish Balay PetscFunctionBegin; 3408133cdb44SSatish Balay baij = (Mat_MPIBAIJ*)mat->data; 3409133cdb44SSatish Balay baij->ht_fact = fact; 3410133cdb44SSatish Balay PetscFunctionReturn(0); 3411133cdb44SSatish Balay } 3412f2a5309cSSatish Balay 34139230625dSJed Brown PetscErrorCode MatMPIBAIJGetSeqBAIJ(Mat A,Mat *Ad,Mat *Ao,const PetscInt *colmap[]) 3414f2a5309cSSatish Balay { 3415f2a5309cSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 3416ab4d48faSStefano Zampini PetscBool flg; 3417ab4d48faSStefano Zampini PetscErrorCode ierr; 34185fd66863SKarl Rupp 3419f2a5309cSSatish Balay PetscFunctionBegin; 3420ab4d48faSStefano Zampini ierr = PetscObjectTypeCompare((PetscObject)A,MATMPIBAIJ,&flg);CHKERRQ(ierr); 3421ab4d48faSStefano Zampini if (!flg) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_SUP,"This function requires a MATMPIBAIJ matrix as input"); 342221e72a00SBarry Smith if (Ad) *Ad = a->A; 342321e72a00SBarry Smith if (Ao) *Ao = a->B; 342421e72a00SBarry Smith if (colmap) *colmap = a->garray; 3425f2a5309cSSatish Balay PetscFunctionReturn(0); 3426f2a5309cSSatish Balay } 342785535b8eSBarry Smith 342885535b8eSBarry Smith /* 342985535b8eSBarry Smith Special version for direct calls from Fortran (to eliminate two function call overheads 343085535b8eSBarry Smith */ 343185535b8eSBarry Smith #if defined(PETSC_HAVE_FORTRAN_CAPS) 343285535b8eSBarry Smith #define matmpibaijsetvaluesblocked_ MATMPIBAIJSETVALUESBLOCKED 343385535b8eSBarry Smith #elif !defined(PETSC_HAVE_FORTRAN_UNDERSCORE) 343485535b8eSBarry Smith #define matmpibaijsetvaluesblocked_ matmpibaijsetvaluesblocked 343585535b8eSBarry Smith #endif 343685535b8eSBarry Smith 343785535b8eSBarry Smith /*@C 343885535b8eSBarry Smith MatMPIBAIJSetValuesBlocked - Direct Fortran call to replace call to MatSetValuesBlocked() 343985535b8eSBarry Smith 344085535b8eSBarry Smith Collective on Mat 344185535b8eSBarry Smith 344285535b8eSBarry Smith Input Parameters: 344385535b8eSBarry Smith + mat - the matrix 344485535b8eSBarry Smith . min - number of input rows 344585535b8eSBarry Smith . im - input rows 344685535b8eSBarry Smith . nin - number of input columns 344785535b8eSBarry Smith . in - input columns 344885535b8eSBarry Smith . v - numerical values input 344985535b8eSBarry Smith - addvin - INSERT_VALUES or ADD_VALUES 345085535b8eSBarry Smith 345195452b02SPatrick Sanan Notes: 345295452b02SPatrick Sanan This has a complete copy of MatSetValuesBlocked_MPIBAIJ() which is terrible code un-reuse. 345385535b8eSBarry Smith 345485535b8eSBarry Smith Level: advanced 345585535b8eSBarry Smith 345685535b8eSBarry Smith .seealso: MatSetValuesBlocked() 345785535b8eSBarry Smith @*/ 345885535b8eSBarry Smith PetscErrorCode matmpibaijsetvaluesblocked_(Mat *matin,PetscInt *min,const PetscInt im[],PetscInt *nin,const PetscInt in[],const MatScalar v[],InsertMode *addvin) 345985535b8eSBarry Smith { 346085535b8eSBarry Smith /* convert input arguments to C version */ 346185535b8eSBarry Smith Mat mat = *matin; 346285535b8eSBarry Smith PetscInt m = *min, n = *nin; 346385535b8eSBarry Smith InsertMode addv = *addvin; 346485535b8eSBarry Smith 346585535b8eSBarry Smith Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 346685535b8eSBarry Smith const MatScalar *value; 346785535b8eSBarry Smith MatScalar *barray = baij->barray; 3468ace3abfcSBarry Smith PetscBool roworiented = baij->roworiented; 346985535b8eSBarry Smith PetscErrorCode ierr; 347085535b8eSBarry Smith PetscInt i,j,ii,jj,row,col,rstart=baij->rstartbs; 347185535b8eSBarry Smith PetscInt rend=baij->rendbs,cstart=baij->cstartbs,stepval; 3472d0f46423SBarry Smith PetscInt cend=baij->cendbs,bs=mat->rmap->bs,bs2=baij->bs2; 347385535b8eSBarry Smith 347485535b8eSBarry Smith PetscFunctionBegin; 347585535b8eSBarry Smith /* tasks normally handled by MatSetValuesBlocked() */ 347626fbe8dcSKarl Rupp if (mat->insertmode == NOT_SET_VALUES) mat->insertmode = addv; 347776bd3646SJed Brown else if (PetscUnlikely(mat->insertmode != addv)) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Cannot mix add values and insert values"); 347876bd3646SJed Brown if (PetscUnlikely(mat->factortype)) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Not for factored matrix"); 347985535b8eSBarry Smith if (mat->assembled) { 348085535b8eSBarry Smith mat->was_assembled = PETSC_TRUE; 348185535b8eSBarry Smith mat->assembled = PETSC_FALSE; 348285535b8eSBarry Smith } 348385535b8eSBarry Smith ierr = PetscLogEventBegin(MAT_SetValues,mat,0,0,0);CHKERRQ(ierr); 348485535b8eSBarry Smith 348585535b8eSBarry Smith 348685535b8eSBarry Smith if (!barray) { 3487785e854fSJed Brown ierr = PetscMalloc1(bs2,&barray);CHKERRQ(ierr); 348885535b8eSBarry Smith baij->barray = barray; 348985535b8eSBarry Smith } 349085535b8eSBarry Smith 349126fbe8dcSKarl Rupp if (roworiented) stepval = (n-1)*bs; 349226fbe8dcSKarl Rupp else stepval = (m-1)*bs; 349326fbe8dcSKarl Rupp 349485535b8eSBarry Smith for (i=0; i<m; i++) { 349585535b8eSBarry Smith if (im[i] < 0) continue; 3496cf9c20a2SJed Brown if (PetscUnlikelyDebug(im[i] >= baij->Mbs)) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large, row %D max %D",im[i],baij->Mbs-1); 349785535b8eSBarry Smith if (im[i] >= rstart && im[i] < rend) { 349885535b8eSBarry Smith row = im[i] - rstart; 349985535b8eSBarry Smith for (j=0; j<n; j++) { 350085535b8eSBarry Smith /* If NumCol = 1 then a copy is not required */ 350185535b8eSBarry Smith if ((roworiented) && (n == 1)) { 350285535b8eSBarry Smith barray = (MatScalar*)v + i*bs2; 350385535b8eSBarry Smith } else if ((!roworiented) && (m == 1)) { 350485535b8eSBarry Smith barray = (MatScalar*)v + j*bs2; 350585535b8eSBarry Smith } else { /* Here a copy is required */ 350685535b8eSBarry Smith if (roworiented) { 350785535b8eSBarry Smith value = v + i*(stepval+bs)*bs + j*bs; 350885535b8eSBarry Smith } else { 350985535b8eSBarry Smith value = v + j*(stepval+bs)*bs + i*bs; 351085535b8eSBarry Smith } 351185535b8eSBarry Smith for (ii=0; ii<bs; ii++,value+=stepval) { 351285535b8eSBarry Smith for (jj=0; jj<bs; jj++) { 351385535b8eSBarry Smith *barray++ = *value++; 351485535b8eSBarry Smith } 351585535b8eSBarry Smith } 351685535b8eSBarry Smith barray -=bs2; 351785535b8eSBarry Smith } 351885535b8eSBarry Smith 351985535b8eSBarry Smith if (in[j] >= cstart && in[j] < cend) { 352085535b8eSBarry Smith col = in[j] - cstart; 35218ab52850SBarry Smith ierr = MatSetValuesBlocked_SeqBAIJ_Inlined(baij->A,row,col,barray,addv,im[i],in[j]);CHKERRQ(ierr); 352226fbe8dcSKarl Rupp } else if (in[j] < 0) continue; 3523cf9c20a2SJed Brown else if (PetscUnlikelyDebug(in[j] >= baij->Nbs)) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large, col %D max %D",in[j],baij->Nbs-1); 352485535b8eSBarry Smith else { 352585535b8eSBarry Smith if (mat->was_assembled) { 352685535b8eSBarry Smith if (!baij->colmap) { 3527ab9863d7SBarry Smith ierr = MatCreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 352885535b8eSBarry Smith } 352985535b8eSBarry Smith 353085535b8eSBarry Smith #if defined(PETSC_USE_DEBUG) 353185535b8eSBarry Smith #if defined(PETSC_USE_CTABLE) 353285535b8eSBarry Smith { PetscInt data; 353385535b8eSBarry Smith ierr = PetscTableFind(baij->colmap,in[j]+1,&data);CHKERRQ(ierr); 3534e32f2f54SBarry Smith if ((data - 1) % bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap"); 353585535b8eSBarry Smith } 353685535b8eSBarry Smith #else 3537e32f2f54SBarry Smith if ((baij->colmap[in[j]] - 1) % bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap"); 353885535b8eSBarry Smith #endif 353985535b8eSBarry Smith #endif 354085535b8eSBarry Smith #if defined(PETSC_USE_CTABLE) 354185535b8eSBarry Smith ierr = PetscTableFind(baij->colmap,in[j]+1,&col);CHKERRQ(ierr); 354285535b8eSBarry Smith col = (col - 1)/bs; 354385535b8eSBarry Smith #else 354485535b8eSBarry Smith col = (baij->colmap[in[j]] - 1)/bs; 354585535b8eSBarry Smith #endif 354685535b8eSBarry Smith if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) { 3547ab9863d7SBarry Smith ierr = MatDisAssemble_MPIBAIJ(mat);CHKERRQ(ierr); 354885535b8eSBarry Smith col = in[j]; 354985535b8eSBarry Smith } 355026fbe8dcSKarl Rupp } else col = in[j]; 35518ab52850SBarry Smith ierr = MatSetValuesBlocked_SeqBAIJ_Inlined(baij->B,row,col,barray,addv,im[i],in[j]);CHKERRQ(ierr); 355285535b8eSBarry Smith } 355385535b8eSBarry Smith } 355485535b8eSBarry Smith } else { 355585535b8eSBarry Smith if (!baij->donotstash) { 355685535b8eSBarry Smith if (roworiented) { 355785535b8eSBarry Smith ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 355885535b8eSBarry Smith } else { 355985535b8eSBarry Smith ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 356085535b8eSBarry Smith } 356185535b8eSBarry Smith } 356285535b8eSBarry Smith } 356385535b8eSBarry Smith } 356485535b8eSBarry Smith 356585535b8eSBarry Smith /* task normally handled by MatSetValuesBlocked() */ 356685535b8eSBarry Smith ierr = PetscLogEventEnd(MAT_SetValues,mat,0,0,0);CHKERRQ(ierr); 356785535b8eSBarry Smith PetscFunctionReturn(0); 356885535b8eSBarry Smith } 3569dfb205c3SBarry Smith 3570dfb205c3SBarry Smith /*@ 3571483a2f95SBarry Smith MatCreateMPIBAIJWithArrays - creates a MPI BAIJ matrix using arrays that contain in standard block 3572dfb205c3SBarry Smith CSR format the local rows. 3573dfb205c3SBarry Smith 3574d083f849SBarry Smith Collective 3575dfb205c3SBarry Smith 3576dfb205c3SBarry Smith Input Parameters: 3577dfb205c3SBarry Smith + comm - MPI communicator 3578dfb205c3SBarry Smith . bs - the block size, only a block size of 1 is supported 3579dfb205c3SBarry Smith . m - number of local rows (Cannot be PETSC_DECIDE) 3580dfb205c3SBarry Smith . n - This value should be the same as the local size used in creating the 3581dfb205c3SBarry Smith x vector for the matrix-vector product y = Ax. (or PETSC_DECIDE to have 3582dfb205c3SBarry Smith calculated if N is given) For square matrices n is almost always m. 3583dfb205c3SBarry Smith . M - number of global rows (or PETSC_DETERMINE to have calculated if m is given) 3584dfb205c3SBarry Smith . N - number of global columns (or PETSC_DETERMINE to have calculated if n is given) 3585483a2f95SBarry Smith . i - row indices; that is i[0] = 0, i[row] = i[row-1] + number of block elements in that rowth block row of the matrix 3586dfb205c3SBarry Smith . j - column indices 3587dfb205c3SBarry Smith - a - matrix values 3588dfb205c3SBarry Smith 3589dfb205c3SBarry Smith Output Parameter: 3590dfb205c3SBarry Smith . mat - the matrix 3591dfb205c3SBarry Smith 3592dfb205c3SBarry Smith Level: intermediate 3593dfb205c3SBarry Smith 3594dfb205c3SBarry Smith Notes: 3595dfb205c3SBarry Smith The i, j, and a arrays ARE copied by this routine into the internal format used by PETSc; 3596dfb205c3SBarry Smith thus you CANNOT change the matrix entries by changing the values of a[] after you have 3597dfb205c3SBarry Smith called this routine. Use MatCreateMPIAIJWithSplitArrays() to avoid needing to copy the arrays. 3598dfb205c3SBarry Smith 35993adadaf3SJed Brown The order of the entries in values is the same as the block compressed sparse row storage format; that is, it is 36003adadaf3SJed Brown the same as a three dimensional array in Fortran values(bs,bs,nnz) that contains the first column of the first 36013adadaf3SJed Brown block, followed by the second column of the first block etc etc. That is, the blocks are contiguous in memory 36023adadaf3SJed Brown with column-major ordering within blocks. 36033adadaf3SJed Brown 3604dfb205c3SBarry Smith The i and j indices are 0 based, and i indices are indices corresponding to the local j array. 3605dfb205c3SBarry Smith 3606dfb205c3SBarry Smith .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatMPIAIJSetPreallocation(), MatMPIAIJSetPreallocationCSR(), 360769b1f4b7SBarry Smith MPIAIJ, MatCreateAIJ(), MatCreateMPIAIJWithSplitArrays() 3608dfb205c3SBarry Smith @*/ 36097087cfbeSBarry Smith PetscErrorCode MatCreateMPIBAIJWithArrays(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,const PetscInt i[],const PetscInt j[],const PetscScalar a[],Mat *mat) 3610dfb205c3SBarry Smith { 3611dfb205c3SBarry Smith PetscErrorCode ierr; 3612dfb205c3SBarry Smith 3613dfb205c3SBarry Smith PetscFunctionBegin; 3614f23aa3ddSBarry Smith if (i[0]) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"i (row indices) must start with 0"); 3615dfb205c3SBarry Smith if (m < 0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"local number of rows (m) cannot be PETSC_DECIDE, or negative"); 3616dfb205c3SBarry Smith ierr = MatCreate(comm,mat);CHKERRQ(ierr); 3617dfb205c3SBarry Smith ierr = MatSetSizes(*mat,m,n,M,N);CHKERRQ(ierr); 36189a43d2d5SJed Brown ierr = MatSetType(*mat,MATMPIBAIJ);CHKERRQ(ierr); 361927f91139SJed Brown ierr = MatSetBlockSize(*mat,bs);CHKERRQ(ierr); 362027f91139SJed Brown ierr = MatSetUp(*mat);CHKERRQ(ierr); 3621d47bf9aaSJed Brown ierr = MatSetOption(*mat,MAT_ROW_ORIENTED,PETSC_FALSE);CHKERRQ(ierr); 3622dfb205c3SBarry Smith ierr = MatMPIBAIJSetPreallocationCSR(*mat,bs,i,j,a);CHKERRQ(ierr); 3623d47bf9aaSJed Brown ierr = MatSetOption(*mat,MAT_ROW_ORIENTED,PETSC_TRUE);CHKERRQ(ierr); 3624dfb205c3SBarry Smith PetscFunctionReturn(0); 3625dfb205c3SBarry Smith } 3626e561ad89SHong Zhang 3627bd153df0SHong Zhang PetscErrorCode MatCreateMPIMatConcatenateSeqMat_MPIBAIJ(MPI_Comm comm,Mat inmat,PetscInt n,MatReuse scall,Mat *outmat) 3628e561ad89SHong Zhang { 3629e561ad89SHong Zhang PetscErrorCode ierr; 3630bd153df0SHong Zhang PetscInt m,N,i,rstart,nnz,Ii,bs,cbs; 3631bd153df0SHong Zhang PetscInt *indx; 3632bd153df0SHong Zhang PetscScalar *values; 3633e561ad89SHong Zhang 3634e561ad89SHong Zhang PetscFunctionBegin; 3635e561ad89SHong Zhang ierr = MatGetSize(inmat,&m,&N);CHKERRQ(ierr); 3636bd153df0SHong Zhang if (scall == MAT_INITIAL_MATRIX) { /* symbolic phase */ 3637bd153df0SHong Zhang Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)inmat->data; 36382c6ba4edSHong Zhang PetscInt *dnz,*onz,mbs,Nbs,nbs; 3639bd153df0SHong Zhang PetscInt *bindx,rmax=a->rmax,j; 364077f764caSHong Zhang PetscMPIInt rank,size; 3641e561ad89SHong Zhang 3642bd153df0SHong Zhang ierr = MatGetBlockSizes(inmat,&bs,&cbs);CHKERRQ(ierr); 3643bd153df0SHong Zhang mbs = m/bs; Nbs = N/cbs; 3644bd153df0SHong Zhang if (n == PETSC_DECIDE) { 3645da91a574SPierre Jolivet ierr = PetscSplitOwnershipBlock(comm,cbs,&n,&N); 3646bd153df0SHong Zhang } 3647da91a574SPierre Jolivet nbs = n/cbs; 3648e561ad89SHong Zhang 3649647a6520SHong Zhang ierr = PetscMalloc1(rmax,&bindx);CHKERRQ(ierr); 365077f764caSHong Zhang ierr = MatPreallocateInitialize(comm,mbs,nbs,dnz,onz);CHKERRQ(ierr); /* inline function, output __end and __rstart are used below */ 365177f764caSHong Zhang 365277f764caSHong Zhang ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 365377f764caSHong Zhang ierr = MPI_Comm_rank(comm,&size);CHKERRQ(ierr); 365477f764caSHong Zhang if (rank == size-1) { 365577f764caSHong Zhang /* Check sum(nbs) = Nbs */ 36562c6ba4edSHong Zhang if (__end != Nbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"Sum of local block columns %D != global block columns %D",__end,Nbs); 365777f764caSHong Zhang } 365877f764caSHong Zhang 365977f764caSHong Zhang rstart = __rstart; /* block rstart of *outmat; see inline function MatPreallocateInitialize */ 3660bd153df0SHong Zhang for (i=0; i<mbs; i++) { 3661647a6520SHong Zhang ierr = MatGetRow_SeqBAIJ(inmat,i*bs,&nnz,&indx,NULL);CHKERRQ(ierr); /* non-blocked nnz and indx */ 3662647a6520SHong Zhang nnz = nnz/bs; 3663647a6520SHong Zhang for (j=0; j<nnz; j++) bindx[j] = indx[j*bs]/bs; 3664647a6520SHong Zhang ierr = MatPreallocateSet(i+rstart,nnz,bindx,dnz,onz);CHKERRQ(ierr); 3665647a6520SHong Zhang ierr = MatRestoreRow_SeqBAIJ(inmat,i*bs,&nnz,&indx,NULL);CHKERRQ(ierr); 3666e561ad89SHong Zhang } 3667647a6520SHong Zhang ierr = PetscFree(bindx);CHKERRQ(ierr); 3668e561ad89SHong Zhang 3669e561ad89SHong Zhang ierr = MatCreate(comm,outmat);CHKERRQ(ierr); 367077f764caSHong Zhang ierr = MatSetSizes(*outmat,m,n,PETSC_DETERMINE,PETSC_DETERMINE);CHKERRQ(ierr); 3671e561ad89SHong Zhang ierr = MatSetBlockSizes(*outmat,bs,cbs);CHKERRQ(ierr); 36728761c3d6SHong Zhang ierr = MatSetType(*outmat,MATBAIJ);CHKERRQ(ierr); 36738761c3d6SHong Zhang ierr = MatSeqBAIJSetPreallocation(*outmat,bs,0,dnz);CHKERRQ(ierr); 3674e561ad89SHong Zhang ierr = MatMPIBAIJSetPreallocation(*outmat,bs,0,dnz,0,onz);CHKERRQ(ierr); 3675e561ad89SHong Zhang ierr = MatPreallocateFinalize(dnz,onz);CHKERRQ(ierr); 3676e561ad89SHong Zhang } 3677e561ad89SHong Zhang 3678bd153df0SHong Zhang /* numeric phase */ 3679647a6520SHong Zhang ierr = MatGetBlockSizes(inmat,&bs,&cbs);CHKERRQ(ierr); 3680bd153df0SHong Zhang ierr = MatGetOwnershipRange(*outmat,&rstart,NULL);CHKERRQ(ierr); 3681e561ad89SHong Zhang 3682e561ad89SHong Zhang for (i=0; i<m; i++) { 3683e561ad89SHong Zhang ierr = MatGetRow_SeqBAIJ(inmat,i,&nnz,&indx,&values);CHKERRQ(ierr); 3684e561ad89SHong Zhang Ii = i + rstart; 3685bd153df0SHong Zhang ierr = MatSetValues(*outmat,1,&Ii,nnz,indx,values,INSERT_VALUES);CHKERRQ(ierr); 3686e561ad89SHong Zhang ierr = MatRestoreRow_SeqBAIJ(inmat,i,&nnz,&indx,&values);CHKERRQ(ierr); 3687e561ad89SHong Zhang } 3688bd153df0SHong Zhang ierr = MatAssemblyBegin(*outmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 3689bd153df0SHong Zhang ierr = MatAssemblyEnd(*outmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 3690e561ad89SHong Zhang PetscFunctionReturn(0); 3691e561ad89SHong Zhang } 3692