xref: /petsc/src/mat/impls/baij/mpi/mpibaij.c (revision 9725ddff998dc2586520cd3b2146a6e1fb0a5b98)
1c6db04a5SJed Brown #include <../src/mat/impls/baij/mpi/mpibaij.h> /*I  "petscmat.h"  I*/
2c5d9258eSSatish Balay 
3b51a4376SLisandro Dalcin #include <petsc/private/hashseti.h>
4c6db04a5SJed Brown #include <petscblaslapack.h>
565a92638SMatthew G. Knepley #include <petscsf.h>
679bdfe76SSatish Balay 
766976f2fSJacob Faibussowitsch static PetscErrorCode MatDestroy_MPIBAIJ(Mat mat)
826cec326SBarry Smith {
926cec326SBarry Smith   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data;
1026cec326SBarry Smith 
1126cec326SBarry Smith   PetscFunctionBegin;
1226cec326SBarry Smith   PetscCall(PetscLogObjectState((PetscObject)mat, "Rows=%" PetscInt_FMT ",Cols=%" PetscInt_FMT, mat->rmap->N, mat->cmap->N));
1326cec326SBarry Smith   PetscCall(MatStashDestroy_Private(&mat->stash));
1426cec326SBarry Smith   PetscCall(MatStashDestroy_Private(&mat->bstash));
1526cec326SBarry Smith   PetscCall(MatDestroy(&baij->A));
1626cec326SBarry Smith   PetscCall(MatDestroy(&baij->B));
1726cec326SBarry Smith #if defined(PETSC_USE_CTABLE)
1826cec326SBarry Smith   PetscCall(PetscHMapIDestroy(&baij->colmap));
1926cec326SBarry Smith #else
2026cec326SBarry Smith   PetscCall(PetscFree(baij->colmap));
2126cec326SBarry Smith #endif
2226cec326SBarry Smith   PetscCall(PetscFree(baij->garray));
2326cec326SBarry Smith   PetscCall(VecDestroy(&baij->lvec));
2426cec326SBarry Smith   PetscCall(VecScatterDestroy(&baij->Mvctx));
2526cec326SBarry Smith   PetscCall(PetscFree2(baij->rowvalues, baij->rowindices));
2626cec326SBarry Smith   PetscCall(PetscFree(baij->barray));
2726cec326SBarry Smith   PetscCall(PetscFree2(baij->hd, baij->ht));
2826cec326SBarry Smith   PetscCall(PetscFree(baij->rangebs));
2926cec326SBarry Smith   PetscCall(PetscFree(mat->data));
3026cec326SBarry Smith 
3126cec326SBarry Smith   PetscCall(PetscObjectChangeTypeName((PetscObject)mat, NULL));
3226cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatStoreValues_C", NULL));
3326cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatRetrieveValues_C", NULL));
3426cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMPIBAIJSetPreallocation_C", NULL));
3526cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMPIBAIJSetPreallocationCSR_C", NULL));
3626cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDiagonalScaleLocal_C", NULL));
3726cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatSetHashTableFactor_C", NULL));
3826cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpibaij_mpisbaij_C", NULL));
3926cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpibaij_mpiadj_C", NULL));
4026cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpibaij_mpiaij_C", NULL));
4126cec326SBarry Smith #if defined(PETSC_HAVE_HYPRE)
4226cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpibaij_hypre_C", NULL));
4326cec326SBarry Smith #endif
4426cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpibaij_is_C", NULL));
4526cec326SBarry Smith   PetscFunctionReturn(PETSC_SUCCESS);
4626cec326SBarry Smith }
4726cec326SBarry Smith 
4826cec326SBarry Smith /* defines MatSetValues_MPI_Hash(), MatAssemblyBegin_MPI_Hash(), and  MatAssemblyEnd_MPI_Hash() */
4926cec326SBarry Smith #define TYPE BAIJ
5026cec326SBarry Smith #include "../src/mat/impls/aij/mpi/mpihashmat.h"
5126cec326SBarry Smith #undef TYPE
5226cec326SBarry Smith 
537ea3e4caSstefano_zampini #if defined(PETSC_HAVE_HYPRE)
547ea3e4caSstefano_zampini PETSC_INTERN PetscErrorCode MatConvert_AIJ_HYPRE(Mat, MatType, MatReuse, Mat *);
557ea3e4caSstefano_zampini #endif
567ea3e4caSstefano_zampini 
5766976f2fSJacob Faibussowitsch static PetscErrorCode MatGetRowMaxAbs_MPIBAIJ(Mat A, Vec v, PetscInt idx[])
58d71ae5a4SJacob Faibussowitsch {
597843d17aSBarry Smith   Mat_MPIBAIJ       *a = (Mat_MPIBAIJ *)A->data;
604e879edeSHong Zhang   PetscInt           i, *idxb = NULL, m = A->rmap->n, bs = A->cmap->bs;
61db161fc6SPierre Jolivet   PetscScalar       *vv;
624e879edeSHong Zhang   Vec                vB, vA;
63db161fc6SPierre Jolivet   const PetscScalar *va, *vb;
647843d17aSBarry Smith 
657843d17aSBarry Smith   PetscFunctionBegin;
66c7b600bfSPierre Jolivet   PetscCall(MatCreateVecs(a->A, NULL, &vA));
679566063dSJacob Faibussowitsch   PetscCall(MatGetRowMaxAbs(a->A, vA, idx));
684e879edeSHong Zhang 
69db161fc6SPierre Jolivet   PetscCall(VecGetArrayRead(vA, &va));
70985db425SBarry Smith   if (idx) {
714e879edeSHong Zhang     for (i = 0; i < m; i++) {
7226fbe8dcSKarl Rupp       if (PetscAbsScalar(va[i])) idx[i] += A->cmap->rstart;
7326fbe8dcSKarl Rupp     }
74985db425SBarry Smith   }
757843d17aSBarry Smith 
76c7b600bfSPierre Jolivet   PetscCall(MatCreateVecs(a->B, NULL, &vB));
779566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(m, &idxb));
789566063dSJacob Faibussowitsch   PetscCall(MatGetRowMaxAbs(a->B, vB, idxb));
797843d17aSBarry Smith 
809566063dSJacob Faibussowitsch   PetscCall(VecGetArrayWrite(v, &vv));
819566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(vB, &vb));
824e879edeSHong Zhang   for (i = 0; i < m; i++) {
8326fbe8dcSKarl Rupp     if (PetscAbsScalar(va[i]) < PetscAbsScalar(vb[i])) {
844e879edeSHong Zhang       vv[i] = vb[i];
854e879edeSHong Zhang       if (idx) idx[i] = bs * a->garray[idxb[i] / bs] + (idxb[i] % bs);
864e879edeSHong Zhang     } else {
874e879edeSHong Zhang       vv[i] = va[i];
889371c9d4SSatish Balay       if (idx && PetscAbsScalar(va[i]) == PetscAbsScalar(vb[i]) && idxb[i] != -1 && idx[i] > bs * a->garray[idxb[i] / bs] + (idxb[i] % bs)) idx[i] = bs * a->garray[idxb[i] / bs] + (idxb[i] % bs);
8926fbe8dcSKarl Rupp     }
907843d17aSBarry Smith   }
91db161fc6SPierre Jolivet   PetscCall(VecRestoreArrayWrite(v, &vv));
92db161fc6SPierre Jolivet   PetscCall(VecRestoreArrayRead(vA, &va));
939566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(vB, &vb));
949566063dSJacob Faibussowitsch   PetscCall(PetscFree(idxb));
959566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&vA));
969566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&vB));
973ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
987843d17aSBarry Smith }
997843d17aSBarry Smith 
100c7b600bfSPierre Jolivet static PetscErrorCode MatGetRowSumAbs_MPIBAIJ(Mat A, Vec v)
101c7b600bfSPierre Jolivet {
102c7b600bfSPierre Jolivet   Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data;
103c7b600bfSPierre Jolivet   Vec          vB, vA;
104c7b600bfSPierre Jolivet 
105c7b600bfSPierre Jolivet   PetscFunctionBegin;
106c7b600bfSPierre Jolivet   PetscCall(MatCreateVecs(a->A, NULL, &vA));
107c7b600bfSPierre Jolivet   PetscCall(MatGetRowSumAbs(a->A, vA));
108c7b600bfSPierre Jolivet   PetscCall(MatCreateVecs(a->B, NULL, &vB));
109c7b600bfSPierre Jolivet   PetscCall(MatGetRowSumAbs(a->B, vB));
110c7b600bfSPierre Jolivet   PetscCall(VecAXPY(vA, 1.0, vB));
111c7b600bfSPierre Jolivet   PetscCall(VecDestroy(&vB));
112c7b600bfSPierre Jolivet   PetscCall(VecCopy(vA, v));
113c7b600bfSPierre Jolivet   PetscCall(VecDestroy(&vA));
114c7b600bfSPierre Jolivet   PetscFunctionReturn(PETSC_SUCCESS);
115c7b600bfSPierre Jolivet }
116c7b600bfSPierre Jolivet 
11766976f2fSJacob Faibussowitsch static PetscErrorCode MatStoreValues_MPIBAIJ(Mat mat)
118d71ae5a4SJacob Faibussowitsch {
1197fc3c18eSBarry Smith   Mat_MPIBAIJ *aij = (Mat_MPIBAIJ *)mat->data;
1207fc3c18eSBarry Smith 
1217fc3c18eSBarry Smith   PetscFunctionBegin;
1229566063dSJacob Faibussowitsch   PetscCall(MatStoreValues(aij->A));
1239566063dSJacob Faibussowitsch   PetscCall(MatStoreValues(aij->B));
1243ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1257fc3c18eSBarry Smith }
1267fc3c18eSBarry Smith 
12766976f2fSJacob Faibussowitsch static PetscErrorCode MatRetrieveValues_MPIBAIJ(Mat mat)
128d71ae5a4SJacob Faibussowitsch {
1297fc3c18eSBarry Smith   Mat_MPIBAIJ *aij = (Mat_MPIBAIJ *)mat->data;
1307fc3c18eSBarry Smith 
1317fc3c18eSBarry Smith   PetscFunctionBegin;
1329566063dSJacob Faibussowitsch   PetscCall(MatRetrieveValues(aij->A));
1339566063dSJacob Faibussowitsch   PetscCall(MatRetrieveValues(aij->B));
1343ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1357fc3c18eSBarry Smith }
1367fc3c18eSBarry Smith 
137537820f0SBarry Smith /*
138537820f0SBarry Smith      Local utility routine that creates a mapping from the global column
13957b952d6SSatish Balay    number to the local number in the off-diagonal part of the local
140e06f6af7SJed Brown    storage of the matrix.  This is done in a non scalable way since the
14157b952d6SSatish Balay    length of colmap equals the global matrix length.
14257b952d6SSatish Balay */
143d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateColmap_MPIBAIJ_Private(Mat mat)
144d71ae5a4SJacob Faibussowitsch {
14557b952d6SSatish Balay   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data;
14657b952d6SSatish Balay   Mat_SeqBAIJ *B    = (Mat_SeqBAIJ *)baij->B->data;
147d0f46423SBarry Smith   PetscInt     nbs = B->nbs, i, bs = mat->rmap->bs;
14857b952d6SSatish Balay 
149d64ed03dSBarry Smith   PetscFunctionBegin;
150aa482453SBarry Smith #if defined(PETSC_USE_CTABLE)
151eec179cfSJacob Faibussowitsch   PetscCall(PetscHMapICreateWithSize(baij->nbs, &baij->colmap));
152c76ffc5fSJacob Faibussowitsch   for (i = 0; i < nbs; i++) PetscCall(PetscHMapISet(baij->colmap, baij->garray[i] + 1, i * bs + 1));
15348e59246SSatish Balay #else
1549566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(baij->Nbs + 1, &baij->colmap));
155928fc39bSSatish Balay   for (i = 0; i < nbs; i++) baij->colmap[baij->garray[i]] = i * bs + 1;
15648e59246SSatish Balay #endif
1573ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
15857b952d6SSatish Balay }
15957b952d6SSatish Balay 
160d40312a9SBarry Smith #define MatSetValues_SeqBAIJ_A_Private(row, col, value, addv, orow, ocol) \
161a8f51744SPierre Jolivet   do { \
16280c1aa95SSatish Balay     brow = row / bs; \
1638e3a54c0SPierre Jolivet     rp   = PetscSafePointerPlusOffset(aj, ai[brow]); \
1648e3a54c0SPierre Jolivet     ap   = PetscSafePointerPlusOffset(aa, bs2 * ai[brow]); \
1659371c9d4SSatish Balay     rmax = aimax[brow]; \
1669371c9d4SSatish Balay     nrow = ailen[brow]; \
16780c1aa95SSatish Balay     bcol = col / bs; \
1689371c9d4SSatish Balay     ridx = row % bs; \
1699371c9d4SSatish Balay     cidx = col % bs; \
1709371c9d4SSatish Balay     low  = 0; \
1719371c9d4SSatish Balay     high = nrow; \
172ab26458aSBarry Smith     while (high - low > 3) { \
173ab26458aSBarry Smith       t = (low + high) / 2; \
174ab26458aSBarry Smith       if (rp[t] > bcol) high = t; \
175ab26458aSBarry Smith       else low = t; \
176ab26458aSBarry Smith     } \
177ab26458aSBarry Smith     for (_i = low; _i < high; _i++) { \
17880c1aa95SSatish Balay       if (rp[_i] > bcol) break; \
17980c1aa95SSatish Balay       if (rp[_i] == bcol) { \
18080c1aa95SSatish Balay         bap = ap + bs2 * _i + bs * cidx + ridx; \
181eada6651SSatish Balay         if (addv == ADD_VALUES) *bap += value; \
182eada6651SSatish Balay         else *bap = value; \
183ac7a638eSSatish Balay         goto a_noinsert; \
18480c1aa95SSatish Balay       } \
18580c1aa95SSatish Balay     } \
18689280ab3SLois Curfman McInnes     if (a->nonew == 1) goto a_noinsert; \
1875f80ce2aSJacob Faibussowitsch     PetscCheck(a->nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", orow, ocol); \
188fef13f97SBarry Smith     MatSeqXAIJReallocateAIJ(A, a->mbs, bs2, nrow, brow, bcol, rmax, aa, ai, aj, rp, ap, aimax, a->nonew, MatScalar); \
18980c1aa95SSatish Balay     N = nrow++ - 1; \
19080c1aa95SSatish Balay     /* shift up all the later entries in this row */ \
1919566063dSJacob Faibussowitsch     PetscCall(PetscArraymove(rp + _i + 1, rp + _i, N - _i + 1)); \
1929566063dSJacob Faibussowitsch     PetscCall(PetscArraymove(ap + bs2 * (_i + 1), ap + bs2 * _i, bs2 * (N - _i + 1))); \
1939566063dSJacob Faibussowitsch     PetscCall(PetscArrayzero(ap + bs2 * _i, bs2)); \
19480c1aa95SSatish Balay     rp[_i]                          = bcol; \
19580c1aa95SSatish Balay     ap[bs2 * _i + bs * cidx + ridx] = value; \
196ac7a638eSSatish Balay   a_noinsert:; \
19780c1aa95SSatish Balay     ailen[brow] = nrow; \
198a8f51744SPierre Jolivet   } while (0)
19957b952d6SSatish Balay 
200d40312a9SBarry Smith #define MatSetValues_SeqBAIJ_B_Private(row, col, value, addv, orow, ocol) \
201a8f51744SPierre Jolivet   do { \
202ac7a638eSSatish Balay     brow = row / bs; \
2038e3a54c0SPierre Jolivet     rp   = PetscSafePointerPlusOffset(bj, bi[brow]); \
2048e3a54c0SPierre Jolivet     ap   = PetscSafePointerPlusOffset(ba, bs2 * bi[brow]); \
2059371c9d4SSatish Balay     rmax = bimax[brow]; \
2069371c9d4SSatish Balay     nrow = bilen[brow]; \
207ac7a638eSSatish Balay     bcol = col / bs; \
2089371c9d4SSatish Balay     ridx = row % bs; \
2099371c9d4SSatish Balay     cidx = col % bs; \
2109371c9d4SSatish Balay     low  = 0; \
2119371c9d4SSatish Balay     high = nrow; \
212ac7a638eSSatish Balay     while (high - low > 3) { \
213ac7a638eSSatish Balay       t = (low + high) / 2; \
214ac7a638eSSatish Balay       if (rp[t] > bcol) high = t; \
215ac7a638eSSatish Balay       else low = t; \
216ac7a638eSSatish Balay     } \
217ac7a638eSSatish Balay     for (_i = low; _i < high; _i++) { \
218ac7a638eSSatish Balay       if (rp[_i] > bcol) break; \
219ac7a638eSSatish Balay       if (rp[_i] == bcol) { \
220ac7a638eSSatish Balay         bap = ap + bs2 * _i + bs * cidx + ridx; \
221ac7a638eSSatish Balay         if (addv == ADD_VALUES) *bap += value; \
222ac7a638eSSatish Balay         else *bap = value; \
223ac7a638eSSatish Balay         goto b_noinsert; \
224ac7a638eSSatish Balay       } \
225ac7a638eSSatish Balay     } \
22689280ab3SLois Curfman McInnes     if (b->nonew == 1) goto b_noinsert; \
2275f80ce2aSJacob Faibussowitsch     PetscCheck(b->nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero at global row/column  (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", orow, ocol); \
228fef13f97SBarry Smith     MatSeqXAIJReallocateAIJ(B, b->mbs, bs2, nrow, brow, bcol, rmax, ba, bi, bj, rp, ap, bimax, b->nonew, MatScalar); \
229ac7a638eSSatish Balay     N = nrow++ - 1; \
230ac7a638eSSatish Balay     /* shift up all the later entries in this row */ \
2319566063dSJacob Faibussowitsch     PetscCall(PetscArraymove(rp + _i + 1, rp + _i, N - _i + 1)); \
2329566063dSJacob Faibussowitsch     PetscCall(PetscArraymove(ap + bs2 * (_i + 1), ap + bs2 * _i, bs2 * (N - _i + 1))); \
2339566063dSJacob Faibussowitsch     PetscCall(PetscArrayzero(ap + bs2 * _i, bs2)); \
234ac7a638eSSatish Balay     rp[_i]                          = bcol; \
235ac7a638eSSatish Balay     ap[bs2 * _i + bs * cidx + ridx] = value; \
236ac7a638eSSatish Balay   b_noinsert:; \
237ac7a638eSSatish Balay     bilen[brow] = nrow; \
238a8f51744SPierre Jolivet   } while (0)
239ac7a638eSSatish Balay 
240d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetValues_MPIBAIJ(Mat mat, PetscInt m, const PetscInt im[], PetscInt n, const PetscInt in[], const PetscScalar v[], InsertMode addv)
241d71ae5a4SJacob Faibussowitsch {
24257b952d6SSatish Balay   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data;
24393fea6afSBarry Smith   MatScalar    value;
244ace3abfcSBarry Smith   PetscBool    roworiented = baij->roworiented;
245b24ad042SBarry Smith   PetscInt     i, j, row, col;
246d0f46423SBarry Smith   PetscInt     rstart_orig = mat->rmap->rstart;
247d0f46423SBarry Smith   PetscInt     rend_orig = mat->rmap->rend, cstart_orig = mat->cmap->rstart;
248d0f46423SBarry Smith   PetscInt     cend_orig = mat->cmap->rend, bs = mat->rmap->bs;
24957b952d6SSatish Balay 
250eada6651SSatish Balay   /* Some Variables required in the macro */
25180c1aa95SSatish Balay   Mat          A     = baij->A;
25257508eceSPierre Jolivet   Mat_SeqBAIJ *a     = (Mat_SeqBAIJ *)A->data;
253b24ad042SBarry Smith   PetscInt    *aimax = a->imax, *ai = a->i, *ailen = a->ilen, *aj = a->j;
2543eda8832SBarry Smith   MatScalar   *aa = a->a;
255ac7a638eSSatish Balay 
256ac7a638eSSatish Balay   Mat          B     = baij->B;
25757508eceSPierre Jolivet   Mat_SeqBAIJ *b     = (Mat_SeqBAIJ *)B->data;
258b24ad042SBarry Smith   PetscInt    *bimax = b->imax, *bi = b->i, *bilen = b->ilen, *bj = b->j;
2593eda8832SBarry Smith   MatScalar   *ba = b->a;
260ac7a638eSSatish Balay 
261b24ad042SBarry Smith   PetscInt  *rp, ii, nrow, _i, rmax, N, brow, bcol;
262b24ad042SBarry Smith   PetscInt   low, high, t, ridx, cidx, bs2 = a->bs2;
2633eda8832SBarry Smith   MatScalar *ap, *bap;
26480c1aa95SSatish Balay 
265d64ed03dSBarry Smith   PetscFunctionBegin;
26657b952d6SSatish Balay   for (i = 0; i < m; i++) {
2675ef9f2a5SBarry Smith     if (im[i] < 0) continue;
2685f80ce2aSJacob Faibussowitsch     PetscCheck(im[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, im[i], mat->rmap->N - 1);
26957b952d6SSatish Balay     if (im[i] >= rstart_orig && im[i] < rend_orig) {
27057b952d6SSatish Balay       row = im[i] - rstart_orig;
27157b952d6SSatish Balay       for (j = 0; j < n; j++) {
27257b952d6SSatish Balay         if (in[j] >= cstart_orig && in[j] < cend_orig) {
27357b952d6SSatish Balay           col = in[j] - cstart_orig;
274db4deed7SKarl Rupp           if (roworiented) value = v[i * n + j];
275db4deed7SKarl Rupp           else value = v[i + j * m];
276d40312a9SBarry Smith           MatSetValues_SeqBAIJ_A_Private(row, col, value, addv, im[i], in[j]);
277f7d195e4SLawrence Mitchell         } else if (in[j] < 0) {
278f7d195e4SLawrence Mitchell           continue;
279f7d195e4SLawrence Mitchell         } else {
280f7d195e4SLawrence Mitchell           PetscCheck(in[j] < mat->cmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, in[j], mat->cmap->N - 1);
28157b952d6SSatish Balay           if (mat->was_assembled) {
28248a46eb9SPierre Jolivet             if (!baij->colmap) PetscCall(MatCreateColmap_MPIBAIJ_Private(mat));
283aa482453SBarry Smith #if defined(PETSC_USE_CTABLE)
284eec179cfSJacob Faibussowitsch             PetscCall(PetscHMapIGetWithDefault(baij->colmap, in[j] / bs + 1, 0, &col));
285bba1ac68SSatish Balay             col = col - 1;
28648e59246SSatish Balay #else
287bba1ac68SSatish Balay             col = baij->colmap[in[j] / bs] - 1;
28848e59246SSatish Balay #endif
289f4f49eeaSPierre Jolivet             if (col < 0 && !((Mat_SeqBAIJ *)baij->B->data)->nonew) {
2909566063dSJacob Faibussowitsch               PetscCall(MatDisAssemble_MPIBAIJ(mat));
2918295de27SSatish Balay               col = in[j];
2929bf004c3SSatish Balay               /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */
2939bf004c3SSatish Balay               B     = baij->B;
29457508eceSPierre Jolivet               b     = (Mat_SeqBAIJ *)B->data;
2959371c9d4SSatish Balay               bimax = b->imax;
2969371c9d4SSatish Balay               bi    = b->i;
2979371c9d4SSatish Balay               bilen = b->ilen;
2989371c9d4SSatish Balay               bj    = b->j;
2999bf004c3SSatish Balay               ba    = b->a;
300f7d195e4SLawrence Mitchell             } else {
301f7d195e4SLawrence Mitchell               PetscCheck(col >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", im[i], in[j]);
302f7d195e4SLawrence Mitchell               col += in[j] % bs;
303f7d195e4SLawrence Mitchell             }
3048295de27SSatish Balay           } else col = in[j];
305db4deed7SKarl Rupp           if (roworiented) value = v[i * n + j];
306db4deed7SKarl Rupp           else value = v[i + j * m];
307d40312a9SBarry Smith           MatSetValues_SeqBAIJ_B_Private(row, col, value, addv, im[i], in[j]);
3089566063dSJacob Faibussowitsch           /* PetscCall(MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv)); */
30957b952d6SSatish Balay         }
31057b952d6SSatish Balay       }
311d64ed03dSBarry Smith     } else {
3125f80ce2aSJacob Faibussowitsch       PetscCheck(!mat->nooffprocentries, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Setting off process row %" PetscInt_FMT " even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set", im[i]);
31390f02eecSBarry Smith       if (!baij->donotstash) {
3145080c13bSMatthew G Knepley         mat->assembled = PETSC_FALSE;
315ff2fd236SBarry Smith         if (roworiented) {
3169566063dSJacob Faibussowitsch           PetscCall(MatStashValuesRow_Private(&mat->stash, im[i], n, in, v + i * n, PETSC_FALSE));
317ff2fd236SBarry Smith         } else {
3189566063dSJacob Faibussowitsch           PetscCall(MatStashValuesCol_Private(&mat->stash, im[i], n, in, v + i, m, PETSC_FALSE));
31957b952d6SSatish Balay         }
32057b952d6SSatish Balay       }
32157b952d6SSatish Balay     }
32290f02eecSBarry Smith   }
3233ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
32457b952d6SSatish Balay }
32557b952d6SSatish Balay 
326d71ae5a4SJacob Faibussowitsch static inline PetscErrorCode MatSetValuesBlocked_SeqBAIJ_Inlined(Mat A, PetscInt row, PetscInt col, const PetscScalar v[], InsertMode is, PetscInt orow, PetscInt ocol)
327d71ae5a4SJacob Faibussowitsch {
328880c6e6aSBarry Smith   Mat_SeqBAIJ       *a = (Mat_SeqBAIJ *)A->data;
3298ab52850SBarry Smith   PetscInt          *rp, low, high, t, ii, jj, nrow, i, rmax, N;
330880c6e6aSBarry Smith   PetscInt          *imax = a->imax, *ai = a->i, *ailen = a->ilen;
3318ab52850SBarry Smith   PetscInt          *aj = a->j, nonew = a->nonew, bs2 = a->bs2, bs = A->rmap->bs;
332880c6e6aSBarry Smith   PetscBool          roworiented = a->roworiented;
333880c6e6aSBarry Smith   const PetscScalar *value       = v;
334880c6e6aSBarry Smith   MatScalar         *ap, *aa = a->a, *bap;
335880c6e6aSBarry Smith 
336880c6e6aSBarry Smith   PetscFunctionBegin;
337880c6e6aSBarry Smith   rp    = aj + ai[row];
338880c6e6aSBarry Smith   ap    = aa + bs2 * ai[row];
339880c6e6aSBarry Smith   rmax  = imax[row];
340880c6e6aSBarry Smith   nrow  = ailen[row];
3418ab52850SBarry Smith   value = v;
3428ab52850SBarry Smith   low   = 0;
3438ab52850SBarry Smith   high  = nrow;
344880c6e6aSBarry Smith   while (high - low > 7) {
345880c6e6aSBarry Smith     t = (low + high) / 2;
346880c6e6aSBarry Smith     if (rp[t] > col) high = t;
347880c6e6aSBarry Smith     else low = t;
348880c6e6aSBarry Smith   }
349880c6e6aSBarry Smith   for (i = low; i < high; i++) {
350880c6e6aSBarry Smith     if (rp[i] > col) break;
351880c6e6aSBarry Smith     if (rp[i] == col) {
352880c6e6aSBarry Smith       bap = ap + bs2 * i;
353880c6e6aSBarry Smith       if (roworiented) {
354880c6e6aSBarry Smith         if (is == ADD_VALUES) {
3558ab52850SBarry Smith           for (ii = 0; ii < bs; ii++) {
356ad540459SPierre Jolivet             for (jj = ii; jj < bs2; jj += bs) bap[jj] += *value++;
357880c6e6aSBarry Smith           }
358880c6e6aSBarry Smith         } else {
3598ab52850SBarry Smith           for (ii = 0; ii < bs; ii++) {
360ad540459SPierre Jolivet             for (jj = ii; jj < bs2; jj += bs) bap[jj] = *value++;
361880c6e6aSBarry Smith           }
362880c6e6aSBarry Smith         }
363880c6e6aSBarry Smith       } else {
364880c6e6aSBarry Smith         if (is == ADD_VALUES) {
3658ab52850SBarry Smith           for (ii = 0; ii < bs; ii++, value += bs) {
366ad540459SPierre Jolivet             for (jj = 0; jj < bs; jj++) bap[jj] += value[jj];
367880c6e6aSBarry Smith             bap += bs;
368880c6e6aSBarry Smith           }
369880c6e6aSBarry Smith         } else {
3708ab52850SBarry Smith           for (ii = 0; ii < bs; ii++, value += bs) {
371ad540459SPierre Jolivet             for (jj = 0; jj < bs; jj++) bap[jj] = value[jj];
372880c6e6aSBarry Smith             bap += bs;
373880c6e6aSBarry Smith           }
374880c6e6aSBarry Smith         }
375880c6e6aSBarry Smith       }
376880c6e6aSBarry Smith       goto noinsert2;
377880c6e6aSBarry Smith     }
378880c6e6aSBarry Smith   }
379880c6e6aSBarry Smith   if (nonew == 1) goto noinsert2;
3805f80ce2aSJacob Faibussowitsch   PetscCheck(nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new global block indexed nonzero block (%" PetscInt_FMT ", %" PetscInt_FMT ") in the matrix", orow, ocol);
381880c6e6aSBarry Smith   MatSeqXAIJReallocateAIJ(A, a->mbs, bs2, nrow, row, col, rmax, aa, ai, aj, rp, ap, imax, nonew, MatScalar);
3829371c9d4SSatish Balay   N = nrow++ - 1;
3839371c9d4SSatish Balay   high++;
384880c6e6aSBarry Smith   /* shift up all the later entries in this row */
3859566063dSJacob Faibussowitsch   PetscCall(PetscArraymove(rp + i + 1, rp + i, N - i + 1));
3869566063dSJacob Faibussowitsch   PetscCall(PetscArraymove(ap + bs2 * (i + 1), ap + bs2 * i, bs2 * (N - i + 1)));
387880c6e6aSBarry Smith   rp[i] = col;
388880c6e6aSBarry Smith   bap   = ap + bs2 * i;
389880c6e6aSBarry Smith   if (roworiented) {
3908ab52850SBarry Smith     for (ii = 0; ii < bs; ii++) {
391ad540459SPierre Jolivet       for (jj = ii; jj < bs2; jj += bs) bap[jj] = *value++;
392880c6e6aSBarry Smith     }
393880c6e6aSBarry Smith   } else {
3948ab52850SBarry Smith     for (ii = 0; ii < bs; ii++) {
395ad540459SPierre Jolivet       for (jj = 0; jj < bs; jj++) *bap++ = *value++;
396880c6e6aSBarry Smith     }
397880c6e6aSBarry Smith   }
398880c6e6aSBarry Smith noinsert2:;
399880c6e6aSBarry Smith   ailen[row] = nrow;
4003ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
401880c6e6aSBarry Smith }
402880c6e6aSBarry Smith 
4038ab52850SBarry Smith /*
4048ab52850SBarry Smith     This routine should be optimized so that the block copy at ** Here a copy is required ** below is not needed
4058ab52850SBarry Smith     by passing additional stride information into the MatSetValuesBlocked_SeqBAIJ_Inlined() routine
4068ab52850SBarry Smith */
40766976f2fSJacob Faibussowitsch static PetscErrorCode MatSetValuesBlocked_MPIBAIJ(Mat mat, PetscInt m, const PetscInt im[], PetscInt n, const PetscInt in[], const PetscScalar v[], InsertMode addv)
408d71ae5a4SJacob Faibussowitsch {
409ab26458aSBarry Smith   Mat_MPIBAIJ       *baij = (Mat_MPIBAIJ *)mat->data;
410dd6ea824SBarry Smith   const PetscScalar *value;
411f15d580aSBarry Smith   MatScalar         *barray      = baij->barray;
412ace3abfcSBarry Smith   PetscBool          roworiented = baij->roworiented;
413899cda47SBarry Smith   PetscInt           i, j, ii, jj, row, col, rstart = baij->rstartbs;
414899cda47SBarry Smith   PetscInt           rend = baij->rendbs, cstart = baij->cstartbs, stepval;
415d0f46423SBarry Smith   PetscInt           cend = baij->cendbs, bs = mat->rmap->bs, bs2 = baij->bs2;
416ab26458aSBarry Smith 
417b16ae2b1SBarry Smith   PetscFunctionBegin;
41830793edcSSatish Balay   if (!barray) {
4199566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(bs2, &barray));
42082502324SSatish Balay     baij->barray = barray;
42130793edcSSatish Balay   }
42230793edcSSatish Balay 
42326fbe8dcSKarl Rupp   if (roworiented) stepval = (n - 1) * bs;
42426fbe8dcSKarl Rupp   else stepval = (m - 1) * bs;
42526fbe8dcSKarl Rupp 
426ab26458aSBarry Smith   for (i = 0; i < m; i++) {
4275ef9f2a5SBarry Smith     if (im[i] < 0) continue;
4286bdcaf15SBarry Smith     PetscCheck(im[i] < baij->Mbs, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Block indexed row too large %" PetscInt_FMT " max %" PetscInt_FMT, im[i], baij->Mbs - 1);
429ab26458aSBarry Smith     if (im[i] >= rstart && im[i] < rend) {
430ab26458aSBarry Smith       row = im[i] - rstart;
431ab26458aSBarry Smith       for (j = 0; j < n; j++) {
43215b57d14SSatish Balay         /* If NumCol = 1 then a copy is not required */
43315b57d14SSatish Balay         if ((roworiented) && (n == 1)) {
434f15d580aSBarry Smith           barray = (MatScalar *)v + i * bs2;
43515b57d14SSatish Balay         } else if ((!roworiented) && (m == 1)) {
436f15d580aSBarry Smith           barray = (MatScalar *)v + j * bs2;
43715b57d14SSatish Balay         } else { /* Here a copy is required */
438ab26458aSBarry Smith           if (roworiented) {
43953ef36baSBarry Smith             value = v + (i * (stepval + bs) + j) * bs;
440ab26458aSBarry Smith           } else {
44153ef36baSBarry Smith             value = v + (j * (stepval + bs) + i) * bs;
442abef11f7SSatish Balay           }
44353ef36baSBarry Smith           for (ii = 0; ii < bs; ii++, value += bs + stepval) {
44426fbe8dcSKarl Rupp             for (jj = 0; jj < bs; jj++) barray[jj] = value[jj];
44553ef36baSBarry Smith             barray += bs;
44647513183SBarry Smith           }
44730793edcSSatish Balay           barray -= bs2;
44815b57d14SSatish Balay         }
449abef11f7SSatish Balay 
450abef11f7SSatish Balay         if (in[j] >= cstart && in[j] < cend) {
451abef11f7SSatish Balay           col = in[j] - cstart;
4529566063dSJacob Faibussowitsch           PetscCall(MatSetValuesBlocked_SeqBAIJ_Inlined(baij->A, row, col, barray, addv, im[i], in[j]));
453f7d195e4SLawrence Mitchell         } else if (in[j] < 0) {
454f7d195e4SLawrence Mitchell           continue;
455f7d195e4SLawrence Mitchell         } else {
456f7d195e4SLawrence Mitchell           PetscCheck(in[j] < baij->Nbs, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Block indexed column too large %" PetscInt_FMT " max %" PetscInt_FMT, in[j], baij->Nbs - 1);
457ab26458aSBarry Smith           if (mat->was_assembled) {
45848a46eb9SPierre Jolivet             if (!baij->colmap) PetscCall(MatCreateColmap_MPIBAIJ_Private(mat));
459a5eb4965SSatish Balay 
460aa482453SBarry Smith #if defined(PETSC_USE_CTABLE)
461eec179cfSJacob Faibussowitsch             PetscCall(PetscHMapIGetWithDefault(baij->colmap, in[j] + 1, 0, &col));
462b758ae8cSBarry Smith             col = col < 1 ? -1 : (col - 1) / bs;
46348e59246SSatish Balay #else
464b758ae8cSBarry Smith             col = baij->colmap[in[j]] < 1 ? -1 : (baij->colmap[in[j]] - 1) / bs;
46548e59246SSatish Balay #endif
466f4f49eeaSPierre Jolivet             if (col < 0 && !((Mat_SeqBAIJ *)baij->B->data)->nonew) {
4679566063dSJacob Faibussowitsch               PetscCall(MatDisAssemble_MPIBAIJ(mat));
468ab26458aSBarry Smith               col = in[j];
4695f80ce2aSJacob Faibussowitsch             } else PetscCheck(col >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new blocked indexed nonzero block (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", im[i], in[j]);
470db4deed7SKarl Rupp           } else col = in[j];
4719566063dSJacob Faibussowitsch           PetscCall(MatSetValuesBlocked_SeqBAIJ_Inlined(baij->B, row, col, barray, addv, im[i], in[j]));
472ab26458aSBarry Smith         }
473ab26458aSBarry Smith       }
474d64ed03dSBarry Smith     } else {
4755f80ce2aSJacob Faibussowitsch       PetscCheck(!mat->nooffprocentries, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Setting off process block indexed row %" PetscInt_FMT " even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set", im[i]);
476ab26458aSBarry Smith       if (!baij->donotstash) {
477ff2fd236SBarry Smith         if (roworiented) {
4789566063dSJacob Faibussowitsch           PetscCall(MatStashValuesRowBlocked_Private(&mat->bstash, im[i], n, in, v, m, n, i));
479ff2fd236SBarry Smith         } else {
4809566063dSJacob Faibussowitsch           PetscCall(MatStashValuesColBlocked_Private(&mat->bstash, im[i], n, in, v, m, n, i));
481ff2fd236SBarry Smith         }
482abef11f7SSatish Balay       }
483ab26458aSBarry Smith     }
484ab26458aSBarry Smith   }
4853ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
486ab26458aSBarry Smith }
4876fa18ffdSBarry Smith 
4880bdbc534SSatish Balay #define HASH_KEY             0.6180339887
489b24ad042SBarry Smith #define HASH(size, key, tmp) (tmp = (key) * HASH_KEY, (PetscInt)((size) * (tmp - (PetscInt)tmp)))
490b24ad042SBarry Smith /* #define HASH(size,key) ((PetscInt)((size)*fmod(((key)*HASH_KEY),1))) */
491b24ad042SBarry Smith /* #define HASH(size,key,tmp) ((PetscInt)((size)*fmod(((key)*HASH_KEY),1))) */
49266976f2fSJacob Faibussowitsch static PetscErrorCode MatSetValues_MPIBAIJ_HT(Mat mat, PetscInt m, const PetscInt im[], PetscInt n, const PetscInt in[], const PetscScalar v[], InsertMode addv)
493d71ae5a4SJacob Faibussowitsch {
4940bdbc534SSatish Balay   Mat_MPIBAIJ *baij        = (Mat_MPIBAIJ *)mat->data;
495ace3abfcSBarry Smith   PetscBool    roworiented = baij->roworiented;
496b24ad042SBarry Smith   PetscInt     i, j, row, col;
497d0f46423SBarry Smith   PetscInt     rstart_orig = mat->rmap->rstart;
498d0f46423SBarry Smith   PetscInt     rend_orig = mat->rmap->rend, Nbs = baij->Nbs;
499d0f46423SBarry Smith   PetscInt     h1, key, size = baij->ht_size, bs = mat->rmap->bs, *HT = baij->ht, idx;
500329f5518SBarry Smith   PetscReal    tmp;
5013eda8832SBarry Smith   MatScalar  **HD       = baij->hd, value;
502b24ad042SBarry Smith   PetscInt     total_ct = baij->ht_total_ct, insert_ct = baij->ht_insert_ct;
5030bdbc534SSatish Balay 
5040bdbc534SSatish Balay   PetscFunctionBegin;
5050bdbc534SSatish Balay   for (i = 0; i < m; i++) {
50676bd3646SJed Brown     if (PetscDefined(USE_DEBUG)) {
5075f80ce2aSJacob Faibussowitsch       PetscCheck(im[i] >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Negative row");
5085f80ce2aSJacob Faibussowitsch       PetscCheck(im[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, im[i], mat->rmap->N - 1);
50976bd3646SJed Brown     }
5100bdbc534SSatish Balay     row = im[i];
511c2760754SSatish Balay     if (row >= rstart_orig && row < rend_orig) {
5120bdbc534SSatish Balay       for (j = 0; j < n; j++) {
5130bdbc534SSatish Balay         col = in[j];
514db4deed7SKarl Rupp         if (roworiented) value = v[i * n + j];
515db4deed7SKarl Rupp         else value = v[i + j * m];
516b24ad042SBarry Smith         /* Look up PetscInto the Hash Table */
517c2760754SSatish Balay         key = (row / bs) * Nbs + (col / bs) + 1;
518c2760754SSatish Balay         h1  = HASH(size, key, tmp);
5190bdbc534SSatish Balay 
520c2760754SSatish Balay         idx = h1;
52176bd3646SJed Brown         if (PetscDefined(USE_DEBUG)) {
522187ce0cbSSatish Balay           insert_ct++;
523187ce0cbSSatish Balay           total_ct++;
524187ce0cbSSatish Balay           if (HT[idx] != key) {
525fbccb6d4SPierre Jolivet             for (idx = h1; (idx < size) && (HT[idx] != key); idx++, total_ct++);
526187ce0cbSSatish Balay             if (idx == size) {
527fbccb6d4SPierre Jolivet               for (idx = 0; (idx < h1) && (HT[idx] != key); idx++, total_ct++);
5285f80ce2aSJacob Faibussowitsch               PetscCheck(idx != h1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "(%" PetscInt_FMT ",%" PetscInt_FMT ") has no entry in the hash table", row, col);
529187ce0cbSSatish Balay             }
530187ce0cbSSatish Balay           }
53176bd3646SJed Brown         } else if (HT[idx] != key) {
532fbccb6d4SPierre Jolivet           for (idx = h1; (idx < size) && (HT[idx] != key); idx++);
533c2760754SSatish Balay           if (idx == size) {
534fbccb6d4SPierre Jolivet             for (idx = 0; (idx < h1) && (HT[idx] != key); idx++);
5355f80ce2aSJacob Faibussowitsch             PetscCheck(idx != h1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "(%" PetscInt_FMT ",%" PetscInt_FMT ") has no entry in the hash table", row, col);
536c2760754SSatish Balay           }
537c2760754SSatish Balay         }
538c2760754SSatish Balay         /* A HASH table entry is found, so insert the values at the correct address */
539c2760754SSatish Balay         if (addv == ADD_VALUES) *(HD[idx] + (col % bs) * bs + (row % bs)) += value;
540c2760754SSatish Balay         else *(HD[idx] + (col % bs) * bs + (row % bs)) = value;
5410bdbc534SSatish Balay       }
54226fbe8dcSKarl Rupp     } else if (!baij->donotstash) {
543ff2fd236SBarry Smith       if (roworiented) {
5449566063dSJacob Faibussowitsch         PetscCall(MatStashValuesRow_Private(&mat->stash, im[i], n, in, v + i * n, PETSC_FALSE));
545ff2fd236SBarry Smith       } else {
5469566063dSJacob Faibussowitsch         PetscCall(MatStashValuesCol_Private(&mat->stash, im[i], n, in, v + i, m, PETSC_FALSE));
5470bdbc534SSatish Balay       }
5480bdbc534SSatish Balay     }
5490bdbc534SSatish Balay   }
55076bd3646SJed Brown   if (PetscDefined(USE_DEBUG)) {
551abf3b562SBarry Smith     baij->ht_total_ct += total_ct;
552abf3b562SBarry Smith     baij->ht_insert_ct += insert_ct;
55376bd3646SJed Brown   }
5543ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
5550bdbc534SSatish Balay }
5560bdbc534SSatish Balay 
55766976f2fSJacob Faibussowitsch static PetscErrorCode MatSetValuesBlocked_MPIBAIJ_HT(Mat mat, PetscInt m, const PetscInt im[], PetscInt n, const PetscInt in[], const PetscScalar v[], InsertMode addv)
558d71ae5a4SJacob Faibussowitsch {
5590bdbc534SSatish Balay   Mat_MPIBAIJ       *baij        = (Mat_MPIBAIJ *)mat->data;
560ace3abfcSBarry Smith   PetscBool          roworiented = baij->roworiented;
561b24ad042SBarry Smith   PetscInt           i, j, ii, jj, row, col;
562899cda47SBarry Smith   PetscInt           rstart = baij->rstartbs;
563d0f46423SBarry Smith   PetscInt           rend = mat->rmap->rend, stepval, bs = mat->rmap->bs, bs2 = baij->bs2, nbs2 = n * bs2;
564b24ad042SBarry Smith   PetscInt           h1, key, size = baij->ht_size, idx, *HT = baij->ht, Nbs = baij->Nbs;
565329f5518SBarry Smith   PetscReal          tmp;
5663eda8832SBarry Smith   MatScalar        **HD = baij->hd, *baij_a;
567dd6ea824SBarry Smith   const PetscScalar *v_t, *value;
568b24ad042SBarry Smith   PetscInt           total_ct = baij->ht_total_ct, insert_ct = baij->ht_insert_ct;
5690bdbc534SSatish Balay 
570d0a41580SSatish Balay   PetscFunctionBegin;
57126fbe8dcSKarl Rupp   if (roworiented) stepval = (n - 1) * bs;
57226fbe8dcSKarl Rupp   else stepval = (m - 1) * bs;
57326fbe8dcSKarl Rupp 
5740bdbc534SSatish Balay   for (i = 0; i < m; i++) {
57576bd3646SJed Brown     if (PetscDefined(USE_DEBUG)) {
5765f80ce2aSJacob Faibussowitsch       PetscCheck(im[i] >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Negative row: %" PetscInt_FMT, im[i]);
5775f80ce2aSJacob Faibussowitsch       PetscCheck(im[i] < baij->Mbs, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, im[i], baij->Mbs - 1);
57876bd3646SJed Brown     }
5790bdbc534SSatish Balay     row = im[i];
580ab715e2cSSatish Balay     v_t = v + i * nbs2;
581c2760754SSatish Balay     if (row >= rstart && row < rend) {
5820bdbc534SSatish Balay       for (j = 0; j < n; j++) {
5830bdbc534SSatish Balay         col = in[j];
5840bdbc534SSatish Balay 
5850bdbc534SSatish Balay         /* Look up into the Hash Table */
586c2760754SSatish Balay         key = row * Nbs + col + 1;
587c2760754SSatish Balay         h1  = HASH(size, key, tmp);
5880bdbc534SSatish Balay 
589c2760754SSatish Balay         idx = h1;
59076bd3646SJed Brown         if (PetscDefined(USE_DEBUG)) {
591187ce0cbSSatish Balay           total_ct++;
592187ce0cbSSatish Balay           insert_ct++;
593187ce0cbSSatish Balay           if (HT[idx] != key) {
594fbccb6d4SPierre Jolivet             for (idx = h1; (idx < size) && (HT[idx] != key); idx++, total_ct++);
595187ce0cbSSatish Balay             if (idx == size) {
596fbccb6d4SPierre Jolivet               for (idx = 0; (idx < h1) && (HT[idx] != key); idx++, total_ct++);
5975f80ce2aSJacob Faibussowitsch               PetscCheck(idx != h1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "(%" PetscInt_FMT ",%" PetscInt_FMT ") has no entry in the hash table", row, col);
598187ce0cbSSatish Balay             }
599187ce0cbSSatish Balay           }
60076bd3646SJed Brown         } else if (HT[idx] != key) {
601fbccb6d4SPierre Jolivet           for (idx = h1; (idx < size) && (HT[idx] != key); idx++);
602c2760754SSatish Balay           if (idx == size) {
603fbccb6d4SPierre Jolivet             for (idx = 0; (idx < h1) && (HT[idx] != key); idx++);
6045f80ce2aSJacob Faibussowitsch             PetscCheck(idx != h1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "(%" PetscInt_FMT ",%" PetscInt_FMT ") has no entry in the hash table", row, col);
605c2760754SSatish Balay           }
606c2760754SSatish Balay         }
607c2760754SSatish Balay         baij_a = HD[idx];
6080bdbc534SSatish Balay         if (roworiented) {
609c2760754SSatish Balay           /*value = v + i*(stepval+bs)*bs + j*bs;*/
610187ce0cbSSatish Balay           /* value = v + (i*(stepval+bs)+j)*bs; */
611187ce0cbSSatish Balay           value = v_t;
612187ce0cbSSatish Balay           v_t += bs;
613fef45726SSatish Balay           if (addv == ADD_VALUES) {
614c2760754SSatish Balay             for (ii = 0; ii < bs; ii++, value += stepval) {
615ad540459SPierre Jolivet               for (jj = ii; jj < bs2; jj += bs) baij_a[jj] += *value++;
616b4cc0f5aSSatish Balay             }
617fef45726SSatish Balay           } else {
618c2760754SSatish Balay             for (ii = 0; ii < bs; ii++, value += stepval) {
619ad540459SPierre Jolivet               for (jj = ii; jj < bs2; jj += bs) baij_a[jj] = *value++;
620fef45726SSatish Balay             }
621fef45726SSatish Balay           }
6220bdbc534SSatish Balay         } else {
6230bdbc534SSatish Balay           value = v + j * (stepval + bs) * bs + i * bs;
624fef45726SSatish Balay           if (addv == ADD_VALUES) {
625b4cc0f5aSSatish Balay             for (ii = 0; ii < bs; ii++, value += stepval, baij_a += bs) {
626ad540459SPierre Jolivet               for (jj = 0; jj < bs; jj++) baij_a[jj] += *value++;
627fef45726SSatish Balay             }
628fef45726SSatish Balay           } else {
629fef45726SSatish Balay             for (ii = 0; ii < bs; ii++, value += stepval, baij_a += bs) {
630ad540459SPierre Jolivet               for (jj = 0; jj < bs; jj++) baij_a[jj] = *value++;
631b4cc0f5aSSatish Balay             }
6320bdbc534SSatish Balay           }
6330bdbc534SSatish Balay         }
6340bdbc534SSatish Balay       }
6350bdbc534SSatish Balay     } else {
6360bdbc534SSatish Balay       if (!baij->donotstash) {
6370bdbc534SSatish Balay         if (roworiented) {
6389566063dSJacob Faibussowitsch           PetscCall(MatStashValuesRowBlocked_Private(&mat->bstash, im[i], n, in, v, m, n, i));
6390bdbc534SSatish Balay         } else {
6409566063dSJacob Faibussowitsch           PetscCall(MatStashValuesColBlocked_Private(&mat->bstash, im[i], n, in, v, m, n, i));
6410bdbc534SSatish Balay         }
6420bdbc534SSatish Balay       }
6430bdbc534SSatish Balay     }
6440bdbc534SSatish Balay   }
64576bd3646SJed Brown   if (PetscDefined(USE_DEBUG)) {
646abf3b562SBarry Smith     baij->ht_total_ct += total_ct;
647abf3b562SBarry Smith     baij->ht_insert_ct += insert_ct;
64876bd3646SJed Brown   }
6493ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6500bdbc534SSatish Balay }
651133cdb44SSatish Balay 
65266976f2fSJacob Faibussowitsch static PetscErrorCode MatGetValues_MPIBAIJ(Mat mat, PetscInt m, const PetscInt idxm[], PetscInt n, const PetscInt idxn[], PetscScalar v[])
653d71ae5a4SJacob Faibussowitsch {
654d6de1c52SSatish Balay   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data;
655d0f46423SBarry Smith   PetscInt     bs = mat->rmap->bs, i, j, bsrstart = mat->rmap->rstart, bsrend = mat->rmap->rend;
656d0f46423SBarry Smith   PetscInt     bscstart = mat->cmap->rstart, bscend = mat->cmap->rend, row, col, data;
657d6de1c52SSatish Balay 
658133cdb44SSatish Balay   PetscFunctionBegin;
659d6de1c52SSatish Balay   for (i = 0; i < m; i++) {
66054c59aa7SJacob Faibussowitsch     if (idxm[i] < 0) continue; /* negative row */
66154c59aa7SJacob Faibussowitsch     PetscCheck(idxm[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, idxm[i], mat->rmap->N - 1);
662d6de1c52SSatish Balay     if (idxm[i] >= bsrstart && idxm[i] < bsrend) {
663d6de1c52SSatish Balay       row = idxm[i] - bsrstart;
664d6de1c52SSatish Balay       for (j = 0; j < n; j++) {
66554c59aa7SJacob Faibussowitsch         if (idxn[j] < 0) continue; /* negative column */
66654c59aa7SJacob Faibussowitsch         PetscCheck(idxn[j] < mat->cmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, idxn[j], mat->cmap->N - 1);
667d6de1c52SSatish Balay         if (idxn[j] >= bscstart && idxn[j] < bscend) {
668d6de1c52SSatish Balay           col = idxn[j] - bscstart;
6699566063dSJacob Faibussowitsch           PetscCall(MatGetValues_SeqBAIJ(baij->A, 1, &row, 1, &col, v + i * n + j));
670d64ed03dSBarry Smith         } else {
67148a46eb9SPierre Jolivet           if (!baij->colmap) PetscCall(MatCreateColmap_MPIBAIJ_Private(mat));
672aa482453SBarry Smith #if defined(PETSC_USE_CTABLE)
673eec179cfSJacob Faibussowitsch           PetscCall(PetscHMapIGetWithDefault(baij->colmap, idxn[j] / bs + 1, 0, &data));
674fa46199cSSatish Balay           data--;
67548e59246SSatish Balay #else
67648e59246SSatish Balay           data = baij->colmap[idxn[j] / bs] - 1;
67748e59246SSatish Balay #endif
67848e59246SSatish Balay           if ((data < 0) || (baij->garray[data / bs] != idxn[j] / bs)) *(v + i * n + j) = 0.0;
679d9d09a02SSatish Balay           else {
68048e59246SSatish Balay             col = data + idxn[j] % bs;
6819566063dSJacob Faibussowitsch             PetscCall(MatGetValues_SeqBAIJ(baij->B, 1, &row, 1, &col, v + i * n + j));
682d6de1c52SSatish Balay           }
683d6de1c52SSatish Balay         }
684d6de1c52SSatish Balay       }
685f23aa3ddSBarry Smith     } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "Only local values currently supported");
686d6de1c52SSatish Balay   }
6873ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
688d6de1c52SSatish Balay }
689d6de1c52SSatish Balay 
69066976f2fSJacob Faibussowitsch static PetscErrorCode MatNorm_MPIBAIJ(Mat mat, NormType type, PetscReal *nrm)
691d71ae5a4SJacob Faibussowitsch {
692d6de1c52SSatish Balay   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data;
693d6de1c52SSatish Balay   Mat_SeqBAIJ *amat = (Mat_SeqBAIJ *)baij->A->data, *bmat = (Mat_SeqBAIJ *)baij->B->data;
694d0f46423SBarry Smith   PetscInt     i, j, bs2 = baij->bs2, bs = baij->A->rmap->bs, nz, row, col;
695329f5518SBarry Smith   PetscReal    sum = 0.0;
6963eda8832SBarry Smith   MatScalar   *v;
697d6de1c52SSatish Balay 
698d64ed03dSBarry Smith   PetscFunctionBegin;
699d6de1c52SSatish Balay   if (baij->size == 1) {
7009566063dSJacob Faibussowitsch     PetscCall(MatNorm(baij->A, type, nrm));
701d6de1c52SSatish Balay   } else {
702d6de1c52SSatish Balay     if (type == NORM_FROBENIUS) {
703d6de1c52SSatish Balay       v  = amat->a;
7048a62d963SHong Zhang       nz = amat->nz * bs2;
7058a62d963SHong Zhang       for (i = 0; i < nz; i++) {
7069371c9d4SSatish Balay         sum += PetscRealPart(PetscConj(*v) * (*v));
7079371c9d4SSatish Balay         v++;
708d6de1c52SSatish Balay       }
709d6de1c52SSatish Balay       v  = bmat->a;
7108a62d963SHong Zhang       nz = bmat->nz * bs2;
7118a62d963SHong Zhang       for (i = 0; i < nz; i++) {
7129371c9d4SSatish Balay         sum += PetscRealPart(PetscConj(*v) * (*v));
7139371c9d4SSatish Balay         v++;
714d6de1c52SSatish Balay       }
715462c564dSBarry Smith       PetscCallMPI(MPIU_Allreduce(&sum, nrm, 1, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)mat)));
7168f1a2a5eSBarry Smith       *nrm = PetscSqrtReal(*nrm);
7178a62d963SHong Zhang     } else if (type == NORM_1) { /* max column sum */
7188a62d963SHong Zhang       PetscReal  *tmp, *tmp2;
719899cda47SBarry Smith       PetscInt   *jj, *garray = baij->garray, cstart = baij->rstartbs;
7206497c311SBarry Smith       PetscMPIInt iN;
7216497c311SBarry Smith 
7229566063dSJacob Faibussowitsch       PetscCall(PetscCalloc1(mat->cmap->N, &tmp));
7239566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(mat->cmap->N, &tmp2));
7249371c9d4SSatish Balay       v  = amat->a;
7259371c9d4SSatish Balay       jj = amat->j;
7268a62d963SHong Zhang       for (i = 0; i < amat->nz; i++) {
7278a62d963SHong Zhang         for (j = 0; j < bs; j++) {
7288a62d963SHong Zhang           col = bs * (cstart + *jj) + j; /* column index */
7298a62d963SHong Zhang           for (row = 0; row < bs; row++) {
7309371c9d4SSatish Balay             tmp[col] += PetscAbsScalar(*v);
7319371c9d4SSatish Balay             v++;
7328a62d963SHong Zhang           }
7338a62d963SHong Zhang         }
7348a62d963SHong Zhang         jj++;
7358a62d963SHong Zhang       }
7369371c9d4SSatish Balay       v  = bmat->a;
7379371c9d4SSatish Balay       jj = bmat->j;
7388a62d963SHong Zhang       for (i = 0; i < bmat->nz; i++) {
7398a62d963SHong Zhang         for (j = 0; j < bs; j++) {
7408a62d963SHong Zhang           col = bs * garray[*jj] + j;
7418a62d963SHong Zhang           for (row = 0; row < bs; row++) {
7429371c9d4SSatish Balay             tmp[col] += PetscAbsScalar(*v);
7439371c9d4SSatish Balay             v++;
7448a62d963SHong Zhang           }
7458a62d963SHong Zhang         }
7468a62d963SHong Zhang         jj++;
7478a62d963SHong Zhang       }
7486497c311SBarry Smith       PetscCall(PetscMPIIntCast(mat->cmap->N, &iN));
749462c564dSBarry Smith       PetscCallMPI(MPIU_Allreduce(tmp, tmp2, iN, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)mat)));
7508a62d963SHong Zhang       *nrm = 0.0;
751d0f46423SBarry Smith       for (j = 0; j < mat->cmap->N; j++) {
7528a62d963SHong Zhang         if (tmp2[j] > *nrm) *nrm = tmp2[j];
7538a62d963SHong Zhang       }
7549566063dSJacob Faibussowitsch       PetscCall(PetscFree(tmp));
7559566063dSJacob Faibussowitsch       PetscCall(PetscFree(tmp2));
7568a62d963SHong Zhang     } else if (type == NORM_INFINITY) { /* max row sum */
757577dd1f9SKris Buschelman       PetscReal *sums;
7589566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(bs, &sums));
7598a62d963SHong Zhang       sum = 0.0;
7608a62d963SHong Zhang       for (j = 0; j < amat->mbs; j++) {
7618a62d963SHong Zhang         for (row = 0; row < bs; row++) sums[row] = 0.0;
7628a62d963SHong Zhang         v  = amat->a + bs2 * amat->i[j];
7638a62d963SHong Zhang         nz = amat->i[j + 1] - amat->i[j];
7648a62d963SHong Zhang         for (i = 0; i < nz; i++) {
7658a62d963SHong Zhang           for (col = 0; col < bs; col++) {
7668a62d963SHong Zhang             for (row = 0; row < bs; row++) {
7679371c9d4SSatish Balay               sums[row] += PetscAbsScalar(*v);
7689371c9d4SSatish Balay               v++;
7698a62d963SHong Zhang             }
7708a62d963SHong Zhang           }
7718a62d963SHong Zhang         }
7728a62d963SHong Zhang         v  = bmat->a + bs2 * bmat->i[j];
7738a62d963SHong Zhang         nz = bmat->i[j + 1] - bmat->i[j];
7748a62d963SHong Zhang         for (i = 0; i < nz; i++) {
7758a62d963SHong Zhang           for (col = 0; col < bs; col++) {
7768a62d963SHong Zhang             for (row = 0; row < bs; row++) {
7779371c9d4SSatish Balay               sums[row] += PetscAbsScalar(*v);
7789371c9d4SSatish Balay               v++;
7798a62d963SHong Zhang             }
7808a62d963SHong Zhang           }
7818a62d963SHong Zhang         }
7828a62d963SHong Zhang         for (row = 0; row < bs; row++) {
7838a62d963SHong Zhang           if (sums[row] > sum) sum = sums[row];
7848a62d963SHong Zhang         }
7858a62d963SHong Zhang       }
786462c564dSBarry Smith       PetscCallMPI(MPIU_Allreduce(&sum, nrm, 1, MPIU_REAL, MPIU_MAX, PetscObjectComm((PetscObject)mat)));
7879566063dSJacob Faibussowitsch       PetscCall(PetscFree(sums));
788ce94432eSBarry Smith     } else SETERRQ(PetscObjectComm((PetscObject)mat), PETSC_ERR_SUP, "No support for this norm yet");
789d64ed03dSBarry Smith   }
7903ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
791d6de1c52SSatish Balay }
79257b952d6SSatish Balay 
793fef45726SSatish Balay /*
794fef45726SSatish Balay   Creates the hash table, and sets the table
795fef45726SSatish Balay   This table is created only once.
796fef45726SSatish Balay   If new entried need to be added to the matrix
797fef45726SSatish Balay   then the hash table has to be destroyed and
798fef45726SSatish Balay   recreated.
799fef45726SSatish Balay */
80066976f2fSJacob Faibussowitsch static PetscErrorCode MatCreateHashTable_MPIBAIJ_Private(Mat mat, PetscReal factor)
801d71ae5a4SJacob Faibussowitsch {
802596b8d2eSBarry Smith   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data;
803596b8d2eSBarry Smith   Mat          A = baij->A, B = baij->B;
804596b8d2eSBarry Smith   Mat_SeqBAIJ *a = (Mat_SeqBAIJ *)A->data, *b = (Mat_SeqBAIJ *)B->data;
805b24ad042SBarry Smith   PetscInt     i, j, k, nz = a->nz + b->nz, h1, *ai = a->i, *aj = a->j, *bi = b->i, *bj = b->j;
806fca92195SBarry Smith   PetscInt     ht_size, bs2 = baij->bs2, rstart = baij->rstartbs;
807899cda47SBarry Smith   PetscInt     cstart = baij->cstartbs, *garray = baij->garray, row, col, Nbs = baij->Nbs;
808b24ad042SBarry Smith   PetscInt    *HT, key;
8093eda8832SBarry Smith   MatScalar  **HD;
810329f5518SBarry Smith   PetscReal    tmp;
8116cf91177SBarry Smith #if defined(PETSC_USE_INFO)
812b24ad042SBarry Smith   PetscInt ct = 0, max = 0;
8134a15367fSSatish Balay #endif
814fef45726SSatish Balay 
815d64ed03dSBarry Smith   PetscFunctionBegin;
8163ba16761SJacob Faibussowitsch   if (baij->ht) PetscFunctionReturn(PETSC_SUCCESS);
817fef45726SSatish Balay 
818fca92195SBarry Smith   baij->ht_size = (PetscInt)(factor * nz);
819fca92195SBarry Smith   ht_size       = baij->ht_size;
8200bdbc534SSatish Balay 
821fef45726SSatish Balay   /* Allocate Memory for Hash Table */
8229566063dSJacob Faibussowitsch   PetscCall(PetscCalloc2(ht_size, &baij->hd, ht_size, &baij->ht));
823b9e4cc15SSatish Balay   HD = baij->hd;
824a07cd24cSSatish Balay   HT = baij->ht;
825b9e4cc15SSatish Balay 
826596b8d2eSBarry Smith   /* Loop Over A */
8270bdbc534SSatish Balay   for (i = 0; i < a->mbs; i++) {
828596b8d2eSBarry Smith     for (j = ai[i]; j < ai[i + 1]; j++) {
8290bdbc534SSatish Balay       row = i + rstart;
8300bdbc534SSatish Balay       col = aj[j] + cstart;
831596b8d2eSBarry Smith 
832187ce0cbSSatish Balay       key = row * Nbs + col + 1;
833fca92195SBarry Smith       h1  = HASH(ht_size, key, tmp);
834fca92195SBarry Smith       for (k = 0; k < ht_size; k++) {
835fca92195SBarry Smith         if (!HT[(h1 + k) % ht_size]) {
836fca92195SBarry Smith           HT[(h1 + k) % ht_size] = key;
837fca92195SBarry Smith           HD[(h1 + k) % ht_size] = a->a + j * bs2;
838596b8d2eSBarry Smith           break;
8396cf91177SBarry Smith #if defined(PETSC_USE_INFO)
840187ce0cbSSatish Balay         } else {
841187ce0cbSSatish Balay           ct++;
842187ce0cbSSatish Balay #endif
843596b8d2eSBarry Smith         }
844187ce0cbSSatish Balay       }
8456cf91177SBarry Smith #if defined(PETSC_USE_INFO)
846187ce0cbSSatish Balay       if (k > max) max = k;
847187ce0cbSSatish Balay #endif
848596b8d2eSBarry Smith     }
849596b8d2eSBarry Smith   }
850596b8d2eSBarry Smith   /* Loop Over B */
8510bdbc534SSatish Balay   for (i = 0; i < b->mbs; i++) {
852596b8d2eSBarry Smith     for (j = bi[i]; j < bi[i + 1]; j++) {
8530bdbc534SSatish Balay       row = i + rstart;
8540bdbc534SSatish Balay       col = garray[bj[j]];
855187ce0cbSSatish Balay       key = row * Nbs + col + 1;
856fca92195SBarry Smith       h1  = HASH(ht_size, key, tmp);
857fca92195SBarry Smith       for (k = 0; k < ht_size; k++) {
858fca92195SBarry Smith         if (!HT[(h1 + k) % ht_size]) {
859fca92195SBarry Smith           HT[(h1 + k) % ht_size] = key;
860fca92195SBarry Smith           HD[(h1 + k) % ht_size] = b->a + j * bs2;
861596b8d2eSBarry Smith           break;
8626cf91177SBarry Smith #if defined(PETSC_USE_INFO)
863187ce0cbSSatish Balay         } else {
864187ce0cbSSatish Balay           ct++;
865187ce0cbSSatish Balay #endif
866596b8d2eSBarry Smith         }
867187ce0cbSSatish Balay       }
8686cf91177SBarry Smith #if defined(PETSC_USE_INFO)
869187ce0cbSSatish Balay       if (k > max) max = k;
870187ce0cbSSatish Balay #endif
871596b8d2eSBarry Smith     }
872596b8d2eSBarry Smith   }
873596b8d2eSBarry Smith 
874596b8d2eSBarry Smith   /* Print Summary */
8756cf91177SBarry Smith #if defined(PETSC_USE_INFO)
876fca92195SBarry Smith   for (i = 0, j = 0; i < ht_size; i++) {
87726fbe8dcSKarl Rupp     if (HT[i]) j++;
878c38d4ed2SBarry Smith   }
8799566063dSJacob Faibussowitsch   PetscCall(PetscInfo(mat, "Average Search = %5.2g,max search = %" PetscInt_FMT "\n", (!j) ? (double)0.0 : (double)(((PetscReal)(ct + j)) / (double)j), max));
880187ce0cbSSatish Balay #endif
8813ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
882596b8d2eSBarry Smith }
88357b952d6SSatish Balay 
88466976f2fSJacob Faibussowitsch static PetscErrorCode MatAssemblyBegin_MPIBAIJ(Mat mat, MatAssemblyType mode)
885d71ae5a4SJacob Faibussowitsch {
886bbb85fb3SSatish Balay   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data;
887b24ad042SBarry Smith   PetscInt     nstash, reallocs;
888bbb85fb3SSatish Balay 
889bbb85fb3SSatish Balay   PetscFunctionBegin;
8903ba16761SJacob Faibussowitsch   if (baij->donotstash || mat->nooffprocentries) PetscFunctionReturn(PETSC_SUCCESS);
891bbb85fb3SSatish Balay 
8929566063dSJacob Faibussowitsch   PetscCall(MatStashScatterBegin_Private(mat, &mat->stash, mat->rmap->range));
8939566063dSJacob Faibussowitsch   PetscCall(MatStashScatterBegin_Private(mat, &mat->bstash, baij->rangebs));
8949566063dSJacob Faibussowitsch   PetscCall(MatStashGetInfo_Private(&mat->stash, &nstash, &reallocs));
8959566063dSJacob Faibussowitsch   PetscCall(PetscInfo(mat, "Stash has %" PetscInt_FMT " entries,uses %" PetscInt_FMT " mallocs.\n", nstash, reallocs));
8969566063dSJacob Faibussowitsch   PetscCall(MatStashGetInfo_Private(&mat->bstash, &nstash, &reallocs));
8979566063dSJacob Faibussowitsch   PetscCall(PetscInfo(mat, "Block-Stash has %" PetscInt_FMT " entries, uses %" PetscInt_FMT " mallocs.\n", nstash, reallocs));
8983ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
899bbb85fb3SSatish Balay }
900bbb85fb3SSatish Balay 
90166976f2fSJacob Faibussowitsch static PetscErrorCode MatAssemblyEnd_MPIBAIJ(Mat mat, MatAssemblyType mode)
902d71ae5a4SJacob Faibussowitsch {
903bbb85fb3SSatish Balay   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data;
90491c97fd4SSatish Balay   Mat_SeqBAIJ *a    = (Mat_SeqBAIJ *)baij->A->data;
905b24ad042SBarry Smith   PetscInt     i, j, rstart, ncols, flg, bs2 = baij->bs2;
906e44c0bd4SBarry Smith   PetscInt    *row, *col;
907ace3abfcSBarry Smith   PetscBool    r1, r2, r3, other_disassembled;
9083eda8832SBarry Smith   MatScalar   *val;
909b24ad042SBarry Smith   PetscMPIInt  n;
910bbb85fb3SSatish Balay 
911bbb85fb3SSatish Balay   PetscFunctionBegin;
9125fd66863SKarl Rupp   /* do not use 'b=(Mat_SeqBAIJ*)baij->B->data' as B can be reset in disassembly */
9134cb17eb5SBarry Smith   if (!baij->donotstash && !mat->nooffprocentries) {
914a2d1c673SSatish Balay     while (1) {
9159566063dSJacob Faibussowitsch       PetscCall(MatStashScatterGetMesg_Private(&mat->stash, &n, &row, &col, &val, &flg));
916a2d1c673SSatish Balay       if (!flg) break;
917a2d1c673SSatish Balay 
918bbb85fb3SSatish Balay       for (i = 0; i < n;) {
919bbb85fb3SSatish Balay         /* Now identify the consecutive vals belonging to the same row */
92026fbe8dcSKarl Rupp         for (j = i, rstart = row[j]; j < n; j++) {
92126fbe8dcSKarl Rupp           if (row[j] != rstart) break;
92226fbe8dcSKarl Rupp         }
923bbb85fb3SSatish Balay         if (j < n) ncols = j - i;
924bbb85fb3SSatish Balay         else ncols = n - i;
925bbb85fb3SSatish Balay         /* Now assemble all these values with a single function call */
9269566063dSJacob Faibussowitsch         PetscCall(MatSetValues_MPIBAIJ(mat, 1, row + i, ncols, col + i, val + i, mat->insertmode));
927bbb85fb3SSatish Balay         i = j;
928bbb85fb3SSatish Balay       }
929bbb85fb3SSatish Balay     }
9309566063dSJacob Faibussowitsch     PetscCall(MatStashScatterEnd_Private(&mat->stash));
931a2d1c673SSatish Balay     /* Now process the block-stash. Since the values are stashed column-oriented,
9325e116b59SBarry Smith        set the row-oriented flag to column-oriented, and after MatSetValues()
933a2d1c673SSatish Balay        restore the original flags */
934a2d1c673SSatish Balay     r1 = baij->roworiented;
935a2d1c673SSatish Balay     r2 = a->roworiented;
93691c97fd4SSatish Balay     r3 = ((Mat_SeqBAIJ *)baij->B->data)->roworiented;
93726fbe8dcSKarl Rupp 
9387c922b88SBarry Smith     baij->roworiented                           = PETSC_FALSE;
9397c922b88SBarry Smith     a->roworiented                              = PETSC_FALSE;
940f4f49eeaSPierre Jolivet     ((Mat_SeqBAIJ *)baij->B->data)->roworiented = PETSC_FALSE;
941a2d1c673SSatish Balay     while (1) {
9429566063dSJacob Faibussowitsch       PetscCall(MatStashScatterGetMesg_Private(&mat->bstash, &n, &row, &col, &val, &flg));
943a2d1c673SSatish Balay       if (!flg) break;
944a2d1c673SSatish Balay 
945a2d1c673SSatish Balay       for (i = 0; i < n;) {
946a2d1c673SSatish Balay         /* Now identify the consecutive vals belonging to the same row */
94726fbe8dcSKarl Rupp         for (j = i, rstart = row[j]; j < n; j++) {
94826fbe8dcSKarl Rupp           if (row[j] != rstart) break;
94926fbe8dcSKarl Rupp         }
950a2d1c673SSatish Balay         if (j < n) ncols = j - i;
951a2d1c673SSatish Balay         else ncols = n - i;
9529566063dSJacob Faibussowitsch         PetscCall(MatSetValuesBlocked_MPIBAIJ(mat, 1, row + i, ncols, col + i, val + i * bs2, mat->insertmode));
953a2d1c673SSatish Balay         i = j;
954a2d1c673SSatish Balay       }
955a2d1c673SSatish Balay     }
9569566063dSJacob Faibussowitsch     PetscCall(MatStashScatterEnd_Private(&mat->bstash));
95726fbe8dcSKarl Rupp 
958a2d1c673SSatish Balay     baij->roworiented                           = r1;
959a2d1c673SSatish Balay     a->roworiented                              = r2;
9605e116b59SBarry Smith     ((Mat_SeqBAIJ *)baij->B->data)->roworiented = r3;
961bbb85fb3SSatish Balay   }
962bbb85fb3SSatish Balay 
9639566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(baij->A, mode));
9649566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(baij->A, mode));
965bbb85fb3SSatish Balay 
966bbb85fb3SSatish Balay   /* determine if any processor has disassembled, if so we must
9676aad120cSJose E. Roman      also disassemble ourselves, in order that we may reassemble. */
968bbb85fb3SSatish Balay   /*
969bbb85fb3SSatish Balay      if nonzero structure of submatrix B cannot change then we know that
970bbb85fb3SSatish Balay      no processor disassembled thus we can skip this stuff
971bbb85fb3SSatish Balay   */
972bbb85fb3SSatish Balay   if (!((Mat_SeqBAIJ *)baij->B->data)->nonew) {
973462c564dSBarry Smith     PetscCallMPI(MPIU_Allreduce(&mat->was_assembled, &other_disassembled, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)mat)));
97448a46eb9SPierre Jolivet     if (mat->was_assembled && !other_disassembled) PetscCall(MatDisAssemble_MPIBAIJ(mat));
975bbb85fb3SSatish Balay   }
976bbb85fb3SSatish Balay 
97748a46eb9SPierre Jolivet   if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) PetscCall(MatSetUpMultiply_MPIBAIJ(mat));
9789566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(baij->B, mode));
9799566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(baij->B, mode));
980bbb85fb3SSatish Balay 
9816cf91177SBarry Smith #if defined(PETSC_USE_INFO)
982bbb85fb3SSatish Balay   if (baij->ht && mode == MAT_FINAL_ASSEMBLY) {
9839566063dSJacob Faibussowitsch     PetscCall(PetscInfo(mat, "Average Hash Table Search in MatSetValues = %5.2f\n", (double)((PetscReal)baij->ht_total_ct) / baij->ht_insert_ct));
98426fbe8dcSKarl Rupp 
985bbb85fb3SSatish Balay     baij->ht_total_ct  = 0;
986bbb85fb3SSatish Balay     baij->ht_insert_ct = 0;
987bbb85fb3SSatish Balay   }
988bbb85fb3SSatish Balay #endif
989bbb85fb3SSatish Balay   if (baij->ht_flag && !baij->ht && mode == MAT_FINAL_ASSEMBLY) {
9909566063dSJacob Faibussowitsch     PetscCall(MatCreateHashTable_MPIBAIJ_Private(mat, baij->ht_fact));
99126fbe8dcSKarl Rupp 
992bbb85fb3SSatish Balay     mat->ops->setvalues        = MatSetValues_MPIBAIJ_HT;
993bbb85fb3SSatish Balay     mat->ops->setvaluesblocked = MatSetValuesBlocked_MPIBAIJ_HT;
994bbb85fb3SSatish Balay   }
995bbb85fb3SSatish Balay 
9969566063dSJacob Faibussowitsch   PetscCall(PetscFree2(baij->rowvalues, baij->rowindices));
99726fbe8dcSKarl Rupp 
998f4259b30SLisandro Dalcin   baij->rowvalues = NULL;
9994f9cfa9eSBarry Smith 
10004f9cfa9eSBarry Smith   /* if no new nonzero locations are allowed in matrix then only set the matrix state the first time through */
1001f4f49eeaSPierre Jolivet   if ((!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) || !((Mat_SeqBAIJ *)baij->A->data)->nonew) {
1002e56f5c9eSBarry Smith     PetscObjectState state = baij->A->nonzerostate + baij->B->nonzerostate;
1003462c564dSBarry Smith     PetscCallMPI(MPIU_Allreduce(&state, &mat->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)mat)));
1004e56f5c9eSBarry Smith   }
10053ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1006bbb85fb3SSatish Balay }
100757b952d6SSatish Balay 
10087da1fb6eSBarry Smith extern PetscErrorCode MatView_SeqBAIJ(Mat, PetscViewer);
10099804daf3SBarry Smith #include <petscdraw.h>
1010d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatView_MPIBAIJ_ASCIIorDraworSocket(Mat mat, PetscViewer viewer)
1011d71ae5a4SJacob Faibussowitsch {
101257b952d6SSatish Balay   Mat_MPIBAIJ      *baij = (Mat_MPIBAIJ *)mat->data;
10137da1fb6eSBarry Smith   PetscMPIInt       rank = baij->rank;
1014d0f46423SBarry Smith   PetscInt          bs   = mat->rmap->bs;
1015ace3abfcSBarry Smith   PetscBool         iascii, isdraw;
1016b0a32e0cSBarry Smith   PetscViewer       sviewer;
1017f3ef73ceSBarry Smith   PetscViewerFormat format;
101857b952d6SSatish Balay 
1019d64ed03dSBarry Smith   PetscFunctionBegin;
10209566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &iascii));
10219566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERDRAW, &isdraw));
102232077d6dSBarry Smith   if (iascii) {
10239566063dSJacob Faibussowitsch     PetscCall(PetscViewerGetFormat(viewer, &format));
1024456192e2SBarry Smith     if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) {
10254e220ebcSLois Curfman McInnes       MatInfo info;
10269566063dSJacob Faibussowitsch       PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)mat), &rank));
10279566063dSJacob Faibussowitsch       PetscCall(MatGetInfo(mat, MAT_LOCAL, &info));
10289566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPushSynchronized(viewer));
10299371c9d4SSatish Balay       PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] Local rows %" PetscInt_FMT " nz %" PetscInt_FMT " nz alloced %" PetscInt_FMT " bs %" PetscInt_FMT " mem %g\n", rank, mat->rmap->n, (PetscInt)info.nz_used, (PetscInt)info.nz_allocated,
10309371c9d4SSatish Balay                                                    mat->rmap->bs, (double)info.memory));
10319566063dSJacob Faibussowitsch       PetscCall(MatGetInfo(baij->A, MAT_LOCAL, &info));
10329566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] on-diagonal part: nz %" PetscInt_FMT " \n", rank, (PetscInt)info.nz_used));
10339566063dSJacob Faibussowitsch       PetscCall(MatGetInfo(baij->B, MAT_LOCAL, &info));
10349566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] off-diagonal part: nz %" PetscInt_FMT " \n", rank, (PetscInt)info.nz_used));
10359566063dSJacob Faibussowitsch       PetscCall(PetscViewerFlush(viewer));
10369566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPopSynchronized(viewer));
10379566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPrintf(viewer, "Information on VecScatter used in matrix-vector product: \n"));
10389566063dSJacob Faibussowitsch       PetscCall(VecScatterView(baij->Mvctx, viewer));
10393ba16761SJacob Faibussowitsch       PetscFunctionReturn(PETSC_SUCCESS);
1040fb9695e5SSatish Balay     } else if (format == PETSC_VIEWER_ASCII_INFO) {
10419566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPrintf(viewer, "  block size is %" PetscInt_FMT "\n", bs));
10423ba16761SJacob Faibussowitsch       PetscFunctionReturn(PETSC_SUCCESS);
104304929863SHong Zhang     } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) {
10443ba16761SJacob Faibussowitsch       PetscFunctionReturn(PETSC_SUCCESS);
104557b952d6SSatish Balay     }
104657b952d6SSatish Balay   }
104757b952d6SSatish Balay 
10480f5bd95cSBarry Smith   if (isdraw) {
1049b0a32e0cSBarry Smith     PetscDraw draw;
1050ace3abfcSBarry Smith     PetscBool isnull;
10519566063dSJacob Faibussowitsch     PetscCall(PetscViewerDrawGetDraw(viewer, 0, &draw));
10529566063dSJacob Faibussowitsch     PetscCall(PetscDrawIsNull(draw, &isnull));
10533ba16761SJacob Faibussowitsch     if (isnull) PetscFunctionReturn(PETSC_SUCCESS);
105457b952d6SSatish Balay   }
105557b952d6SSatish Balay 
10567da1fb6eSBarry Smith   {
105757b952d6SSatish Balay     /* assemble the entire matrix onto first processor. */
105857b952d6SSatish Balay     Mat          A;
105957b952d6SSatish Balay     Mat_SeqBAIJ *Aloc;
1060d0f46423SBarry Smith     PetscInt     M = mat->rmap->N, N = mat->cmap->N, *ai, *aj, col, i, j, k, *rvals, mbs = baij->mbs;
10613eda8832SBarry Smith     MatScalar   *a;
10623e219373SBarry Smith     const char  *matname;
106357b952d6SSatish Balay 
1064f204ca49SKris Buschelman     /* Here we are creating a temporary matrix, so will assume MPIBAIJ is acceptable */
1065f204ca49SKris Buschelman     /* Perhaps this should be the type of mat? */
10669566063dSJacob Faibussowitsch     PetscCall(MatCreate(PetscObjectComm((PetscObject)mat), &A));
1067dd400576SPatrick Sanan     if (rank == 0) {
10689566063dSJacob Faibussowitsch       PetscCall(MatSetSizes(A, M, N, M, N));
1069d64ed03dSBarry Smith     } else {
10709566063dSJacob Faibussowitsch       PetscCall(MatSetSizes(A, 0, 0, M, N));
107157b952d6SSatish Balay     }
10729566063dSJacob Faibussowitsch     PetscCall(MatSetType(A, MATMPIBAIJ));
10739566063dSJacob Faibussowitsch     PetscCall(MatMPIBAIJSetPreallocation(A, mat->rmap->bs, 0, NULL, 0, NULL));
10749566063dSJacob Faibussowitsch     PetscCall(MatSetOption(A, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_FALSE));
107557b952d6SSatish Balay 
107657b952d6SSatish Balay     /* copy over the A part */
107757b952d6SSatish Balay     Aloc = (Mat_SeqBAIJ *)baij->A->data;
10789371c9d4SSatish Balay     ai   = Aloc->i;
10799371c9d4SSatish Balay     aj   = Aloc->j;
10809371c9d4SSatish Balay     a    = Aloc->a;
10819566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(bs, &rvals));
108257b952d6SSatish Balay 
108357b952d6SSatish Balay     for (i = 0; i < mbs; i++) {
1084899cda47SBarry Smith       rvals[0] = bs * (baij->rstartbs + i);
108526fbe8dcSKarl Rupp       for (j = 1; j < bs; j++) rvals[j] = rvals[j - 1] + 1;
108657b952d6SSatish Balay       for (j = ai[i]; j < ai[i + 1]; j++) {
1087899cda47SBarry Smith         col = (baij->cstartbs + aj[j]) * bs;
108857b952d6SSatish Balay         for (k = 0; k < bs; k++) {
10899566063dSJacob Faibussowitsch           PetscCall(MatSetValues_MPIBAIJ(A, bs, rvals, 1, &col, a, INSERT_VALUES));
10909371c9d4SSatish Balay           col++;
10919371c9d4SSatish Balay           a += bs;
109257b952d6SSatish Balay         }
109357b952d6SSatish Balay       }
109457b952d6SSatish Balay     }
109557b952d6SSatish Balay     /* copy over the B part */
109657b952d6SSatish Balay     Aloc = (Mat_SeqBAIJ *)baij->B->data;
10979371c9d4SSatish Balay     ai   = Aloc->i;
10989371c9d4SSatish Balay     aj   = Aloc->j;
10999371c9d4SSatish Balay     a    = Aloc->a;
110057b952d6SSatish Balay     for (i = 0; i < mbs; i++) {
1101899cda47SBarry Smith       rvals[0] = bs * (baij->rstartbs + i);
110226fbe8dcSKarl Rupp       for (j = 1; j < bs; j++) rvals[j] = rvals[j - 1] + 1;
110357b952d6SSatish Balay       for (j = ai[i]; j < ai[i + 1]; j++) {
110457b952d6SSatish Balay         col = baij->garray[aj[j]] * bs;
110557b952d6SSatish Balay         for (k = 0; k < bs; k++) {
11069566063dSJacob Faibussowitsch           PetscCall(MatSetValues_MPIBAIJ(A, bs, rvals, 1, &col, a, INSERT_VALUES));
11079371c9d4SSatish Balay           col++;
11089371c9d4SSatish Balay           a += bs;
110957b952d6SSatish Balay         }
111057b952d6SSatish Balay       }
111157b952d6SSatish Balay     }
11129566063dSJacob Faibussowitsch     PetscCall(PetscFree(rvals));
11139566063dSJacob Faibussowitsch     PetscCall(MatAssemblyBegin(A, MAT_FINAL_ASSEMBLY));
11149566063dSJacob Faibussowitsch     PetscCall(MatAssemblyEnd(A, MAT_FINAL_ASSEMBLY));
111555843e3eSBarry Smith     /*
111655843e3eSBarry Smith        Everyone has to call to draw the matrix since the graphics waits are
1117b0a32e0cSBarry Smith        synchronized across all processors that share the PetscDraw object
111855843e3eSBarry Smith     */
11199566063dSJacob Faibussowitsch     PetscCall(PetscViewerGetSubViewer(viewer, PETSC_COMM_SELF, &sviewer));
112023a3927dSBarry Smith     if (((PetscObject)mat)->name) PetscCall(PetscObjectGetName((PetscObject)mat, &matname));
1121dd400576SPatrick Sanan     if (rank == 0) {
1122f4f49eeaSPierre Jolivet       if (((PetscObject)mat)->name) PetscCall(PetscObjectSetName((PetscObject)((Mat_MPIBAIJ *)A->data)->A, matname));
1123f4f49eeaSPierre Jolivet       PetscCall(MatView_SeqBAIJ(((Mat_MPIBAIJ *)A->data)->A, sviewer));
112457b952d6SSatish Balay     }
11259566063dSJacob Faibussowitsch     PetscCall(PetscViewerRestoreSubViewer(viewer, PETSC_COMM_SELF, &sviewer));
11269566063dSJacob Faibussowitsch     PetscCall(MatDestroy(&A));
112757b952d6SSatish Balay   }
11283ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
112957b952d6SSatish Balay }
113057b952d6SSatish Balay 
1131618cc2edSLisandro Dalcin /* Used for both MPIBAIJ and MPISBAIJ matrices */
1132d71ae5a4SJacob Faibussowitsch PetscErrorCode MatView_MPIBAIJ_Binary(Mat mat, PetscViewer viewer)
1133d71ae5a4SJacob Faibussowitsch {
1134b51a4376SLisandro Dalcin   Mat_MPIBAIJ    *aij    = (Mat_MPIBAIJ *)mat->data;
1135b51a4376SLisandro Dalcin   Mat_SeqBAIJ    *A      = (Mat_SeqBAIJ *)aij->A->data;
1136b51a4376SLisandro Dalcin   Mat_SeqBAIJ    *B      = (Mat_SeqBAIJ *)aij->B->data;
1137b51a4376SLisandro Dalcin   const PetscInt *garray = aij->garray;
113817a3732bSBarry Smith   PetscInt        header[4], M, N, m, rs, cs, bs, cnt, i, j, ja, jb, k, l;
11396497c311SBarry Smith   PetscCount      nz, hnz;
1140b51a4376SLisandro Dalcin   PetscInt       *rowlens, *colidxs;
1141b51a4376SLisandro Dalcin   PetscScalar    *matvals;
114217a3732bSBarry Smith   PetscMPIInt     rank;
1143660746e0SBarry Smith 
1144660746e0SBarry Smith   PetscFunctionBegin;
11459566063dSJacob Faibussowitsch   PetscCall(PetscViewerSetUp(viewer));
1146b51a4376SLisandro Dalcin 
1147b51a4376SLisandro Dalcin   M  = mat->rmap->N;
1148b51a4376SLisandro Dalcin   N  = mat->cmap->N;
1149b51a4376SLisandro Dalcin   m  = mat->rmap->n;
1150b51a4376SLisandro Dalcin   rs = mat->rmap->rstart;
1151b51a4376SLisandro Dalcin   cs = mat->cmap->rstart;
1152b51a4376SLisandro Dalcin   bs = mat->rmap->bs;
1153b51a4376SLisandro Dalcin   nz = bs * bs * (A->nz + B->nz);
1154b51a4376SLisandro Dalcin 
1155b51a4376SLisandro Dalcin   /* write matrix header */
1156660746e0SBarry Smith   header[0] = MAT_FILE_CLASSID;
11579371c9d4SSatish Balay   header[1] = M;
11589371c9d4SSatish Balay   header[2] = N;
11596497c311SBarry Smith   PetscCallMPI(MPI_Reduce(&nz, &hnz, 1, MPIU_COUNT, MPI_SUM, 0, PetscObjectComm((PetscObject)mat)));
116017a3732bSBarry Smith   PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)mat), &rank));
116117a3732bSBarry Smith   if (rank == 0) PetscCall(PetscIntCast(hnz, &header[3]));
11629566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryWrite(viewer, header, 4, PETSC_INT));
1163660746e0SBarry Smith 
1164b51a4376SLisandro Dalcin   /* fill in and store row lengths */
11659566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(m, &rowlens));
1166b51a4376SLisandro Dalcin   for (cnt = 0, i = 0; i < A->mbs; i++)
11679371c9d4SSatish Balay     for (j = 0; j < bs; j++) rowlens[cnt++] = bs * (A->i[i + 1] - A->i[i] + B->i[i + 1] - B->i[i]);
11689566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryWriteAll(viewer, rowlens, m, rs, M, PETSC_INT));
11699566063dSJacob Faibussowitsch   PetscCall(PetscFree(rowlens));
1170660746e0SBarry Smith 
1171b51a4376SLisandro Dalcin   /* fill in and store column indices */
11729566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(nz, &colidxs));
1173b51a4376SLisandro Dalcin   for (cnt = 0, i = 0; i < A->mbs; i++) {
1174b51a4376SLisandro Dalcin     for (k = 0; k < bs; k++) {
1175b51a4376SLisandro Dalcin       for (jb = B->i[i]; jb < B->i[i + 1]; jb++) {
1176b51a4376SLisandro Dalcin         if (garray[B->j[jb]] > cs / bs) break;
11779371c9d4SSatish Balay         for (l = 0; l < bs; l++) colidxs[cnt++] = bs * garray[B->j[jb]] + l;
1178660746e0SBarry Smith       }
1179b51a4376SLisandro Dalcin       for (ja = A->i[i]; ja < A->i[i + 1]; ja++)
11809371c9d4SSatish Balay         for (l = 0; l < bs; l++) colidxs[cnt++] = bs * A->j[ja] + l + cs;
1181b51a4376SLisandro Dalcin       for (; jb < B->i[i + 1]; jb++)
11829371c9d4SSatish Balay         for (l = 0; l < bs; l++) colidxs[cnt++] = bs * garray[B->j[jb]] + l;
1183660746e0SBarry Smith     }
1184660746e0SBarry Smith   }
11856497c311SBarry Smith   PetscCheck(cnt == nz, PETSC_COMM_SELF, PETSC_ERR_LIB, "Internal PETSc error: cnt = %" PetscInt_FMT " nz = %" PetscCount_FMT, cnt, nz);
11869566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryWriteAll(viewer, colidxs, nz, PETSC_DECIDE, PETSC_DECIDE, PETSC_INT));
11879566063dSJacob Faibussowitsch   PetscCall(PetscFree(colidxs));
1188660746e0SBarry Smith 
1189b51a4376SLisandro Dalcin   /* fill in and store nonzero values */
11909566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(nz, &matvals));
1191b51a4376SLisandro Dalcin   for (cnt = 0, i = 0; i < A->mbs; i++) {
1192b51a4376SLisandro Dalcin     for (k = 0; k < bs; k++) {
1193b51a4376SLisandro Dalcin       for (jb = B->i[i]; jb < B->i[i + 1]; jb++) {
1194b51a4376SLisandro Dalcin         if (garray[B->j[jb]] > cs / bs) break;
11959371c9d4SSatish Balay         for (l = 0; l < bs; l++) matvals[cnt++] = B->a[bs * (bs * jb + l) + k];
1196660746e0SBarry Smith       }
1197b51a4376SLisandro Dalcin       for (ja = A->i[i]; ja < A->i[i + 1]; ja++)
11989371c9d4SSatish Balay         for (l = 0; l < bs; l++) matvals[cnt++] = A->a[bs * (bs * ja + l) + k];
1199b51a4376SLisandro Dalcin       for (; jb < B->i[i + 1]; jb++)
12009371c9d4SSatish Balay         for (l = 0; l < bs; l++) matvals[cnt++] = B->a[bs * (bs * jb + l) + k];
1201660746e0SBarry Smith     }
1202b51a4376SLisandro Dalcin   }
12039566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryWriteAll(viewer, matvals, nz, PETSC_DECIDE, PETSC_DECIDE, PETSC_SCALAR));
12049566063dSJacob Faibussowitsch   PetscCall(PetscFree(matvals));
1205660746e0SBarry Smith 
1206b51a4376SLisandro Dalcin   /* write block size option to the viewer's .info file */
12079566063dSJacob Faibussowitsch   PetscCall(MatView_Binary_BlockSizes(mat, viewer));
12083ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1209660746e0SBarry Smith }
1210660746e0SBarry Smith 
1211d71ae5a4SJacob Faibussowitsch PetscErrorCode MatView_MPIBAIJ(Mat mat, PetscViewer viewer)
1212d71ae5a4SJacob Faibussowitsch {
1213ace3abfcSBarry Smith   PetscBool iascii, isdraw, issocket, isbinary;
121457b952d6SSatish Balay 
1215d64ed03dSBarry Smith   PetscFunctionBegin;
12169566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &iascii));
12179566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERDRAW, &isdraw));
12189566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERSOCKET, &issocket));
12199566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary));
1220660746e0SBarry Smith   if (iascii || isdraw || issocket) {
12219566063dSJacob Faibussowitsch     PetscCall(MatView_MPIBAIJ_ASCIIorDraworSocket(mat, viewer));
12221baa6e33SBarry Smith   } else if (isbinary) PetscCall(MatView_MPIBAIJ_Binary(mat, viewer));
12233ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
122457b952d6SSatish Balay }
122557b952d6SSatish Balay 
122666976f2fSJacob Faibussowitsch static PetscErrorCode MatMult_MPIBAIJ(Mat A, Vec xx, Vec yy)
1227d71ae5a4SJacob Faibussowitsch {
1228cee3aa6bSSatish Balay   Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data;
1229b24ad042SBarry Smith   PetscInt     nt;
1230cee3aa6bSSatish Balay 
1231d64ed03dSBarry Smith   PetscFunctionBegin;
12329566063dSJacob Faibussowitsch   PetscCall(VecGetLocalSize(xx, &nt));
12335f80ce2aSJacob Faibussowitsch   PetscCheck(nt == A->cmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Incompatible partition of A and xx");
12349566063dSJacob Faibussowitsch   PetscCall(VecGetLocalSize(yy, &nt));
1235da81f932SPierre Jolivet   PetscCheck(nt == A->rmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Incompatible partition of A and yy");
12369566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(a->Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD));
12379566063dSJacob Faibussowitsch   PetscCall((*a->A->ops->mult)(a->A, xx, yy));
12389566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(a->Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD));
12399566063dSJacob Faibussowitsch   PetscCall((*a->B->ops->multadd)(a->B, a->lvec, yy, yy));
12403ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1241cee3aa6bSSatish Balay }
1242cee3aa6bSSatish Balay 
124366976f2fSJacob Faibussowitsch static PetscErrorCode MatMultAdd_MPIBAIJ(Mat A, Vec xx, Vec yy, Vec zz)
1244d71ae5a4SJacob Faibussowitsch {
1245cee3aa6bSSatish Balay   Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data;
1246d64ed03dSBarry Smith 
1247d64ed03dSBarry Smith   PetscFunctionBegin;
12489566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(a->Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD));
12499566063dSJacob Faibussowitsch   PetscCall((*a->A->ops->multadd)(a->A, xx, yy, zz));
12509566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(a->Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD));
12519566063dSJacob Faibussowitsch   PetscCall((*a->B->ops->multadd)(a->B, a->lvec, zz, zz));
12523ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1253cee3aa6bSSatish Balay }
1254cee3aa6bSSatish Balay 
125566976f2fSJacob Faibussowitsch static PetscErrorCode MatMultTranspose_MPIBAIJ(Mat A, Vec xx, Vec yy)
1256d71ae5a4SJacob Faibussowitsch {
1257cee3aa6bSSatish Balay   Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data;
1258cee3aa6bSSatish Balay 
1259d64ed03dSBarry Smith   PetscFunctionBegin;
1260cee3aa6bSSatish Balay   /* do nondiagonal part */
12619566063dSJacob Faibussowitsch   PetscCall((*a->B->ops->multtranspose)(a->B, xx, a->lvec));
1262cee3aa6bSSatish Balay   /* do local part */
12639566063dSJacob Faibussowitsch   PetscCall((*a->A->ops->multtranspose)(a->A, xx, yy));
1264e4a140f6SJunchao Zhang   /* add partial results together */
12659566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(a->Mvctx, a->lvec, yy, ADD_VALUES, SCATTER_REVERSE));
12669566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(a->Mvctx, a->lvec, yy, ADD_VALUES, SCATTER_REVERSE));
12673ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1268cee3aa6bSSatish Balay }
1269cee3aa6bSSatish Balay 
127066976f2fSJacob Faibussowitsch static PetscErrorCode MatMultTransposeAdd_MPIBAIJ(Mat A, Vec xx, Vec yy, Vec zz)
1271d71ae5a4SJacob Faibussowitsch {
1272cee3aa6bSSatish Balay   Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data;
1273cee3aa6bSSatish Balay 
1274d64ed03dSBarry Smith   PetscFunctionBegin;
1275cee3aa6bSSatish Balay   /* do nondiagonal part */
12769566063dSJacob Faibussowitsch   PetscCall((*a->B->ops->multtranspose)(a->B, xx, a->lvec));
1277cee3aa6bSSatish Balay   /* do local part */
12789566063dSJacob Faibussowitsch   PetscCall((*a->A->ops->multtransposeadd)(a->A, xx, yy, zz));
1279e4a140f6SJunchao Zhang   /* add partial results together */
12809566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(a->Mvctx, a->lvec, zz, ADD_VALUES, SCATTER_REVERSE));
12819566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(a->Mvctx, a->lvec, zz, ADD_VALUES, SCATTER_REVERSE));
12823ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1283cee3aa6bSSatish Balay }
1284cee3aa6bSSatish Balay 
1285cee3aa6bSSatish Balay /*
1286cee3aa6bSSatish Balay   This only works correctly for square matrices where the subblock A->A is the
1287cee3aa6bSSatish Balay    diagonal block
1288cee3aa6bSSatish Balay */
128966976f2fSJacob Faibussowitsch static PetscErrorCode MatGetDiagonal_MPIBAIJ(Mat A, Vec v)
1290d71ae5a4SJacob Faibussowitsch {
1291d64ed03dSBarry Smith   PetscFunctionBegin;
12925f80ce2aSJacob Faibussowitsch   PetscCheck(A->rmap->N == A->cmap->N, PETSC_COMM_SELF, PETSC_ERR_SUP, "Supports only square matrix where A->A is diag block");
12939566063dSJacob Faibussowitsch   PetscCall(MatGetDiagonal(((Mat_MPIBAIJ *)A->data)->A, v));
12943ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1295cee3aa6bSSatish Balay }
1296cee3aa6bSSatish Balay 
129766976f2fSJacob Faibussowitsch static PetscErrorCode MatScale_MPIBAIJ(Mat A, PetscScalar aa)
1298d71ae5a4SJacob Faibussowitsch {
1299cee3aa6bSSatish Balay   Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data;
1300d64ed03dSBarry Smith 
1301d64ed03dSBarry Smith   PetscFunctionBegin;
13029566063dSJacob Faibussowitsch   PetscCall(MatScale(a->A, aa));
13039566063dSJacob Faibussowitsch   PetscCall(MatScale(a->B, aa));
13043ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1305cee3aa6bSSatish Balay }
1306026e39d0SSatish Balay 
1307d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetRow_MPIBAIJ(Mat matin, PetscInt row, PetscInt *nz, PetscInt **idx, PetscScalar **v)
1308d71ae5a4SJacob Faibussowitsch {
1309acdf5bf4SSatish Balay   Mat_MPIBAIJ *mat = (Mat_MPIBAIJ *)matin->data;
131087828ca2SBarry Smith   PetscScalar *vworkA, *vworkB, **pvA, **pvB, *v_p;
1311d0f46423SBarry Smith   PetscInt     bs = matin->rmap->bs, bs2 = mat->bs2, i, *cworkA, *cworkB, **pcA, **pcB;
1312d0f46423SBarry Smith   PetscInt     nztot, nzA, nzB, lrow, brstart = matin->rmap->rstart, brend = matin->rmap->rend;
1313899cda47SBarry Smith   PetscInt    *cmap, *idx_p, cstart = mat->cstartbs;
1314acdf5bf4SSatish Balay 
1315d64ed03dSBarry Smith   PetscFunctionBegin;
13165f80ce2aSJacob Faibussowitsch   PetscCheck(row >= brstart && row < brend, PETSC_COMM_SELF, PETSC_ERR_SUP, "Only local rows");
13175f80ce2aSJacob Faibussowitsch   PetscCheck(!mat->getrowactive, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Already active");
1318acdf5bf4SSatish Balay   mat->getrowactive = PETSC_TRUE;
1319acdf5bf4SSatish Balay 
1320acdf5bf4SSatish Balay   if (!mat->rowvalues && (idx || v)) {
1321acdf5bf4SSatish Balay     /*
1322acdf5bf4SSatish Balay         allocate enough space to hold information from the longest row.
1323acdf5bf4SSatish Balay     */
1324acdf5bf4SSatish Balay     Mat_SeqBAIJ *Aa = (Mat_SeqBAIJ *)mat->A->data, *Ba = (Mat_SeqBAIJ *)mat->B->data;
1325b24ad042SBarry Smith     PetscInt     max = 1, mbs = mat->mbs, tmp;
1326bd16c2feSSatish Balay     for (i = 0; i < mbs; i++) {
1327acdf5bf4SSatish Balay       tmp = Aa->i[i + 1] - Aa->i[i] + Ba->i[i + 1] - Ba->i[i];
132826fbe8dcSKarl Rupp       if (max < tmp) max = tmp;
1329acdf5bf4SSatish Balay     }
13309566063dSJacob Faibussowitsch     PetscCall(PetscMalloc2(max * bs2, &mat->rowvalues, max * bs2, &mat->rowindices));
1331acdf5bf4SSatish Balay   }
1332d9d09a02SSatish Balay   lrow = row - brstart;
1333acdf5bf4SSatish Balay 
13349371c9d4SSatish Balay   pvA = &vworkA;
13359371c9d4SSatish Balay   pcA = &cworkA;
13369371c9d4SSatish Balay   pvB = &vworkB;
13379371c9d4SSatish Balay   pcB = &cworkB;
13389371c9d4SSatish Balay   if (!v) {
13399371c9d4SSatish Balay     pvA = NULL;
13409371c9d4SSatish Balay     pvB = NULL;
13419371c9d4SSatish Balay   }
13429371c9d4SSatish Balay   if (!idx) {
13439371c9d4SSatish Balay     pcA = NULL;
13449371c9d4SSatish Balay     if (!v) pcB = NULL;
13459371c9d4SSatish Balay   }
13469566063dSJacob Faibussowitsch   PetscCall((*mat->A->ops->getrow)(mat->A, lrow, &nzA, pcA, pvA));
13479566063dSJacob Faibussowitsch   PetscCall((*mat->B->ops->getrow)(mat->B, lrow, &nzB, pcB, pvB));
1348acdf5bf4SSatish Balay   nztot = nzA + nzB;
1349acdf5bf4SSatish Balay 
1350acdf5bf4SSatish Balay   cmap = mat->garray;
1351acdf5bf4SSatish Balay   if (v || idx) {
1352acdf5bf4SSatish Balay     if (nztot) {
1353acdf5bf4SSatish Balay       /* Sort by increasing column numbers, assuming A and B already sorted */
1354b24ad042SBarry Smith       PetscInt imark = -1;
1355acdf5bf4SSatish Balay       if (v) {
1356acdf5bf4SSatish Balay         *v = v_p = mat->rowvalues;
1357acdf5bf4SSatish Balay         for (i = 0; i < nzB; i++) {
1358d9d09a02SSatish Balay           if (cmap[cworkB[i] / bs] < cstart) v_p[i] = vworkB[i];
1359acdf5bf4SSatish Balay           else break;
1360acdf5bf4SSatish Balay         }
1361acdf5bf4SSatish Balay         imark = i;
1362acdf5bf4SSatish Balay         for (i = 0; i < nzA; i++) v_p[imark + i] = vworkA[i];
1363acdf5bf4SSatish Balay         for (i = imark; i < nzB; i++) v_p[nzA + i] = vworkB[i];
1364acdf5bf4SSatish Balay       }
1365acdf5bf4SSatish Balay       if (idx) {
1366acdf5bf4SSatish Balay         *idx = idx_p = mat->rowindices;
1367acdf5bf4SSatish Balay         if (imark > -1) {
1368ad540459SPierre Jolivet           for (i = 0; i < imark; i++) idx_p[i] = cmap[cworkB[i] / bs] * bs + cworkB[i] % bs;
1369acdf5bf4SSatish Balay         } else {
1370acdf5bf4SSatish Balay           for (i = 0; i < nzB; i++) {
137126fbe8dcSKarl Rupp             if (cmap[cworkB[i] / bs] < cstart) idx_p[i] = cmap[cworkB[i] / bs] * bs + cworkB[i] % bs;
1372acdf5bf4SSatish Balay             else break;
1373acdf5bf4SSatish Balay           }
1374acdf5bf4SSatish Balay           imark = i;
1375acdf5bf4SSatish Balay         }
1376d9d09a02SSatish Balay         for (i = 0; i < nzA; i++) idx_p[imark + i] = cstart * bs + cworkA[i];
1377d9d09a02SSatish Balay         for (i = imark; i < nzB; i++) idx_p[nzA + i] = cmap[cworkB[i] / bs] * bs + cworkB[i] % bs;
1378acdf5bf4SSatish Balay       }
1379d64ed03dSBarry Smith     } else {
1380f4259b30SLisandro Dalcin       if (idx) *idx = NULL;
1381f4259b30SLisandro Dalcin       if (v) *v = NULL;
1382d212a18eSSatish Balay     }
1383acdf5bf4SSatish Balay   }
1384acdf5bf4SSatish Balay   *nz = nztot;
13859566063dSJacob Faibussowitsch   PetscCall((*mat->A->ops->restorerow)(mat->A, lrow, &nzA, pcA, pvA));
13869566063dSJacob Faibussowitsch   PetscCall((*mat->B->ops->restorerow)(mat->B, lrow, &nzB, pcB, pvB));
13873ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1388acdf5bf4SSatish Balay }
1389acdf5bf4SSatish Balay 
1390d71ae5a4SJacob Faibussowitsch PetscErrorCode MatRestoreRow_MPIBAIJ(Mat mat, PetscInt row, PetscInt *nz, PetscInt **idx, PetscScalar **v)
1391d71ae5a4SJacob Faibussowitsch {
1392acdf5bf4SSatish Balay   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data;
1393d64ed03dSBarry Smith 
1394d64ed03dSBarry Smith   PetscFunctionBegin;
13955f80ce2aSJacob Faibussowitsch   PetscCheck(baij->getrowactive, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "MatGetRow not called");
1396acdf5bf4SSatish Balay   baij->getrowactive = PETSC_FALSE;
13973ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1398acdf5bf4SSatish Balay }
1399acdf5bf4SSatish Balay 
140066976f2fSJacob Faibussowitsch static PetscErrorCode MatZeroEntries_MPIBAIJ(Mat A)
1401d71ae5a4SJacob Faibussowitsch {
140258667388SSatish Balay   Mat_MPIBAIJ *l = (Mat_MPIBAIJ *)A->data;
1403d64ed03dSBarry Smith 
1404d64ed03dSBarry Smith   PetscFunctionBegin;
14059566063dSJacob Faibussowitsch   PetscCall(MatZeroEntries(l->A));
14069566063dSJacob Faibussowitsch   PetscCall(MatZeroEntries(l->B));
14073ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
140858667388SSatish Balay }
14090ac07820SSatish Balay 
141066976f2fSJacob Faibussowitsch static PetscErrorCode MatGetInfo_MPIBAIJ(Mat matin, MatInfoType flag, MatInfo *info)
1411d71ae5a4SJacob Faibussowitsch {
14124e220ebcSLois Curfman McInnes   Mat_MPIBAIJ   *a = (Mat_MPIBAIJ *)matin->data;
14134e220ebcSLois Curfman McInnes   Mat            A = a->A, B = a->B;
14143966268fSBarry Smith   PetscLogDouble isend[5], irecv[5];
14150ac07820SSatish Balay 
1416d64ed03dSBarry Smith   PetscFunctionBegin;
1417d0f46423SBarry Smith   info->block_size = (PetscReal)matin->rmap->bs;
141826fbe8dcSKarl Rupp 
14199566063dSJacob Faibussowitsch   PetscCall(MatGetInfo(A, MAT_LOCAL, info));
142026fbe8dcSKarl Rupp 
14219371c9d4SSatish Balay   isend[0] = info->nz_used;
14229371c9d4SSatish Balay   isend[1] = info->nz_allocated;
14239371c9d4SSatish Balay   isend[2] = info->nz_unneeded;
14249371c9d4SSatish Balay   isend[3] = info->memory;
14259371c9d4SSatish Balay   isend[4] = info->mallocs;
142626fbe8dcSKarl Rupp 
14279566063dSJacob Faibussowitsch   PetscCall(MatGetInfo(B, MAT_LOCAL, info));
142826fbe8dcSKarl Rupp 
14299371c9d4SSatish Balay   isend[0] += info->nz_used;
14309371c9d4SSatish Balay   isend[1] += info->nz_allocated;
14319371c9d4SSatish Balay   isend[2] += info->nz_unneeded;
14329371c9d4SSatish Balay   isend[3] += info->memory;
14339371c9d4SSatish Balay   isend[4] += info->mallocs;
143426fbe8dcSKarl Rupp 
14350ac07820SSatish Balay   if (flag == MAT_LOCAL) {
14364e220ebcSLois Curfman McInnes     info->nz_used      = isend[0];
14374e220ebcSLois Curfman McInnes     info->nz_allocated = isend[1];
14384e220ebcSLois Curfman McInnes     info->nz_unneeded  = isend[2];
14394e220ebcSLois Curfman McInnes     info->memory       = isend[3];
14404e220ebcSLois Curfman McInnes     info->mallocs      = isend[4];
14410ac07820SSatish Balay   } else if (flag == MAT_GLOBAL_MAX) {
1442462c564dSBarry Smith     PetscCallMPI(MPIU_Allreduce(isend, irecv, 5, MPIU_PETSCLOGDOUBLE, MPI_MAX, PetscObjectComm((PetscObject)matin)));
144326fbe8dcSKarl Rupp 
14444e220ebcSLois Curfman McInnes     info->nz_used      = irecv[0];
14454e220ebcSLois Curfman McInnes     info->nz_allocated = irecv[1];
14464e220ebcSLois Curfman McInnes     info->nz_unneeded  = irecv[2];
14474e220ebcSLois Curfman McInnes     info->memory       = irecv[3];
14484e220ebcSLois Curfman McInnes     info->mallocs      = irecv[4];
14490ac07820SSatish Balay   } else if (flag == MAT_GLOBAL_SUM) {
1450462c564dSBarry Smith     PetscCallMPI(MPIU_Allreduce(isend, irecv, 5, MPIU_PETSCLOGDOUBLE, MPI_SUM, PetscObjectComm((PetscObject)matin)));
145126fbe8dcSKarl Rupp 
14524e220ebcSLois Curfman McInnes     info->nz_used      = irecv[0];
14534e220ebcSLois Curfman McInnes     info->nz_allocated = irecv[1];
14544e220ebcSLois Curfman McInnes     info->nz_unneeded  = irecv[2];
14554e220ebcSLois Curfman McInnes     info->memory       = irecv[3];
14564e220ebcSLois Curfman McInnes     info->mallocs      = irecv[4];
145798921bdaSJacob Faibussowitsch   } else SETERRQ(PetscObjectComm((PetscObject)matin), PETSC_ERR_ARG_WRONG, "Unknown MatInfoType argument %d", (int)flag);
14584e220ebcSLois Curfman McInnes   info->fill_ratio_given  = 0; /* no parallel LU/ILU/Cholesky */
14594e220ebcSLois Curfman McInnes   info->fill_ratio_needed = 0;
14604e220ebcSLois Curfman McInnes   info->factor_mallocs    = 0;
14613ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
14620ac07820SSatish Balay }
14630ac07820SSatish Balay 
146466976f2fSJacob Faibussowitsch static PetscErrorCode MatSetOption_MPIBAIJ(Mat A, MatOption op, PetscBool flg)
1465d71ae5a4SJacob Faibussowitsch {
146658667388SSatish Balay   Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data;
146758667388SSatish Balay 
1468d64ed03dSBarry Smith   PetscFunctionBegin;
146912c028f9SKris Buschelman   switch (op) {
1470512a5fc5SBarry Smith   case MAT_NEW_NONZERO_LOCATIONS:
147112c028f9SKris Buschelman   case MAT_NEW_NONZERO_ALLOCATION_ERR:
147228b2fa4aSMatthew Knepley   case MAT_UNUSED_NONZERO_LOCATION_ERR:
1473a9817697SBarry Smith   case MAT_KEEP_NONZERO_PATTERN:
147412c028f9SKris Buschelman   case MAT_NEW_NONZERO_LOCATION_ERR:
147543674050SBarry Smith     MatCheckPreallocated(A, 1);
14769566063dSJacob Faibussowitsch     PetscCall(MatSetOption(a->A, op, flg));
14779566063dSJacob Faibussowitsch     PetscCall(MatSetOption(a->B, op, flg));
147812c028f9SKris Buschelman     break;
147912c028f9SKris Buschelman   case MAT_ROW_ORIENTED:
148043674050SBarry Smith     MatCheckPreallocated(A, 1);
14814e0d8c25SBarry Smith     a->roworiented = flg;
148226fbe8dcSKarl Rupp 
14839566063dSJacob Faibussowitsch     PetscCall(MatSetOption(a->A, op, flg));
14849566063dSJacob Faibussowitsch     PetscCall(MatSetOption(a->B, op, flg));
148512c028f9SKris Buschelman     break;
14868c78258cSHong Zhang   case MAT_FORCE_DIAGONAL_ENTRIES:
1487d71ae5a4SJacob Faibussowitsch   case MAT_SORTED_FULL:
1488*9725ddffSPierre Jolivet   case MAT_SUBMAT_SINGLEIS:
1489d71ae5a4SJacob Faibussowitsch     PetscCall(PetscInfo(A, "Option %s ignored\n", MatOptions[op]));
1490d71ae5a4SJacob Faibussowitsch     break;
1491d71ae5a4SJacob Faibussowitsch   case MAT_IGNORE_OFF_PROC_ENTRIES:
1492d71ae5a4SJacob Faibussowitsch     a->donotstash = flg;
1493d71ae5a4SJacob Faibussowitsch     break;
149412c028f9SKris Buschelman   case MAT_USE_HASH_TABLE:
14954e0d8c25SBarry Smith     a->ht_flag = flg;
1496abf3b562SBarry Smith     a->ht_fact = 1.39;
149712c028f9SKris Buschelman     break;
149877e54ba9SKris Buschelman   case MAT_SYMMETRIC:
149977e54ba9SKris Buschelman   case MAT_STRUCTURALLY_SYMMETRIC:
15002188ac68SBarry Smith   case MAT_HERMITIAN:
15012188ac68SBarry Smith   case MAT_SYMMETRY_ETERNAL:
1502b94d7dedSBarry Smith   case MAT_STRUCTURAL_SYMMETRY_ETERNAL:
1503b94d7dedSBarry Smith   case MAT_SPD_ETERNAL:
1504b94d7dedSBarry Smith     /* if the diagonal matrix is square it inherits some of the properties above */
1505*9725ddffSPierre Jolivet     if (a->A && A->rmap->n == A->cmap->n) PetscCall(MatSetOption(a->A, op, flg));
150677e54ba9SKris Buschelman     break;
1507d71ae5a4SJacob Faibussowitsch   default:
1508d71ae5a4SJacob Faibussowitsch     SETERRQ(PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "unknown option %d", op);
1509d64ed03dSBarry Smith   }
15103ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
151158667388SSatish Balay }
151258667388SSatish Balay 
151366976f2fSJacob Faibussowitsch static PetscErrorCode MatTranspose_MPIBAIJ(Mat A, MatReuse reuse, Mat *matout)
1514d71ae5a4SJacob Faibussowitsch {
15150ac07820SSatish Balay   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)A->data;
15160ac07820SSatish Balay   Mat_SeqBAIJ *Aloc;
15170ac07820SSatish Balay   Mat          B;
1518d0f46423SBarry Smith   PetscInt     M = A->rmap->N, N = A->cmap->N, *ai, *aj, i, *rvals, j, k, col;
1519d0f46423SBarry Smith   PetscInt     bs = A->rmap->bs, mbs = baij->mbs;
15203eda8832SBarry Smith   MatScalar   *a;
15210ac07820SSatish Balay 
1522d64ed03dSBarry Smith   PetscFunctionBegin;
15237fb60732SBarry Smith   if (reuse == MAT_REUSE_MATRIX) PetscCall(MatTransposeCheckNonzeroState_Private(A, *matout));
1524cf37664fSBarry Smith   if (reuse == MAT_INITIAL_MATRIX || reuse == MAT_INPLACE_MATRIX) {
15259566063dSJacob Faibussowitsch     PetscCall(MatCreate(PetscObjectComm((PetscObject)A), &B));
15269566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(B, A->cmap->n, A->rmap->n, N, M));
15279566063dSJacob Faibussowitsch     PetscCall(MatSetType(B, ((PetscObject)A)->type_name));
15282e72b8d9SBarry Smith     /* Do not know preallocation information, but must set block size */
15299566063dSJacob Faibussowitsch     PetscCall(MatMPIBAIJSetPreallocation(B, A->rmap->bs, PETSC_DECIDE, NULL, PETSC_DECIDE, NULL));
1530fc4dec0aSBarry Smith   } else {
1531fc4dec0aSBarry Smith     B = *matout;
1532fc4dec0aSBarry Smith   }
15330ac07820SSatish Balay 
15340ac07820SSatish Balay   /* copy over the A part */
15350ac07820SSatish Balay   Aloc = (Mat_SeqBAIJ *)baij->A->data;
15369371c9d4SSatish Balay   ai   = Aloc->i;
15379371c9d4SSatish Balay   aj   = Aloc->j;
15389371c9d4SSatish Balay   a    = Aloc->a;
15399566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(bs, &rvals));
15400ac07820SSatish Balay 
15410ac07820SSatish Balay   for (i = 0; i < mbs; i++) {
1542899cda47SBarry Smith     rvals[0] = bs * (baij->rstartbs + i);
154326fbe8dcSKarl Rupp     for (j = 1; j < bs; j++) rvals[j] = rvals[j - 1] + 1;
15440ac07820SSatish Balay     for (j = ai[i]; j < ai[i + 1]; j++) {
1545899cda47SBarry Smith       col = (baij->cstartbs + aj[j]) * bs;
15460ac07820SSatish Balay       for (k = 0; k < bs; k++) {
15479566063dSJacob Faibussowitsch         PetscCall(MatSetValues_MPIBAIJ(B, 1, &col, bs, rvals, a, INSERT_VALUES));
154826fbe8dcSKarl Rupp 
15499371c9d4SSatish Balay         col++;
15509371c9d4SSatish Balay         a += bs;
15510ac07820SSatish Balay       }
15520ac07820SSatish Balay     }
15530ac07820SSatish Balay   }
15540ac07820SSatish Balay   /* copy over the B part */
15550ac07820SSatish Balay   Aloc = (Mat_SeqBAIJ *)baij->B->data;
15569371c9d4SSatish Balay   ai   = Aloc->i;
15579371c9d4SSatish Balay   aj   = Aloc->j;
15589371c9d4SSatish Balay   a    = Aloc->a;
15590ac07820SSatish Balay   for (i = 0; i < mbs; i++) {
1560899cda47SBarry Smith     rvals[0] = bs * (baij->rstartbs + i);
156126fbe8dcSKarl Rupp     for (j = 1; j < bs; j++) rvals[j] = rvals[j - 1] + 1;
15620ac07820SSatish Balay     for (j = ai[i]; j < ai[i + 1]; j++) {
15630ac07820SSatish Balay       col = baij->garray[aj[j]] * bs;
15640ac07820SSatish Balay       for (k = 0; k < bs; k++) {
15659566063dSJacob Faibussowitsch         PetscCall(MatSetValues_MPIBAIJ(B, 1, &col, bs, rvals, a, INSERT_VALUES));
156626fbe8dcSKarl Rupp         col++;
156726fbe8dcSKarl Rupp         a += bs;
15680ac07820SSatish Balay       }
15690ac07820SSatish Balay     }
15700ac07820SSatish Balay   }
15719566063dSJacob Faibussowitsch   PetscCall(PetscFree(rvals));
15729566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY));
15739566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY));
15740ac07820SSatish Balay 
1575cf37664fSBarry Smith   if (reuse == MAT_INITIAL_MATRIX || reuse == MAT_REUSE_MATRIX) *matout = B;
157648a46eb9SPierre Jolivet   else PetscCall(MatHeaderMerge(A, &B));
15773ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
15780ac07820SSatish Balay }
15790e95ebc0SSatish Balay 
158066976f2fSJacob Faibussowitsch static PetscErrorCode MatDiagonalScale_MPIBAIJ(Mat mat, Vec ll, Vec rr)
1581d71ae5a4SJacob Faibussowitsch {
158236c4a09eSSatish Balay   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data;
158336c4a09eSSatish Balay   Mat          a = baij->A, b = baij->B;
1584b24ad042SBarry Smith   PetscInt     s1, s2, s3;
15850e95ebc0SSatish Balay 
1586d64ed03dSBarry Smith   PetscFunctionBegin;
15879566063dSJacob Faibussowitsch   PetscCall(MatGetLocalSize(mat, &s2, &s3));
158836c4a09eSSatish Balay   if (rr) {
15899566063dSJacob Faibussowitsch     PetscCall(VecGetLocalSize(rr, &s1));
15905f80ce2aSJacob Faibussowitsch     PetscCheck(s1 == s3, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "right vector non-conforming local size");
159136c4a09eSSatish Balay     /* Overlap communication with computation. */
15929566063dSJacob Faibussowitsch     PetscCall(VecScatterBegin(baij->Mvctx, rr, baij->lvec, INSERT_VALUES, SCATTER_FORWARD));
159336c4a09eSSatish Balay   }
15940e95ebc0SSatish Balay   if (ll) {
15959566063dSJacob Faibussowitsch     PetscCall(VecGetLocalSize(ll, &s1));
15965f80ce2aSJacob Faibussowitsch     PetscCheck(s1 == s2, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "left vector non-conforming local size");
1597dbbe0bcdSBarry Smith     PetscUseTypeMethod(b, diagonalscale, ll, NULL);
15980e95ebc0SSatish Balay   }
159936c4a09eSSatish Balay   /* scale  the diagonal block */
1600dbbe0bcdSBarry Smith   PetscUseTypeMethod(a, diagonalscale, ll, rr);
160136c4a09eSSatish Balay 
160236c4a09eSSatish Balay   if (rr) {
160336c4a09eSSatish Balay     /* Do a scatter end and then right scale the off-diagonal block */
16049566063dSJacob Faibussowitsch     PetscCall(VecScatterEnd(baij->Mvctx, rr, baij->lvec, INSERT_VALUES, SCATTER_FORWARD));
1605dbbe0bcdSBarry Smith     PetscUseTypeMethod(b, diagonalscale, NULL, baij->lvec);
160636c4a09eSSatish Balay   }
16073ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
16080e95ebc0SSatish Balay }
16090e95ebc0SSatish Balay 
161066976f2fSJacob Faibussowitsch static PetscErrorCode MatZeroRows_MPIBAIJ(Mat A, PetscInt N, const PetscInt rows[], PetscScalar diag, Vec x, Vec b)
1611d71ae5a4SJacob Faibussowitsch {
16120ac07820SSatish Balay   Mat_MPIBAIJ *l = (Mat_MPIBAIJ *)A->data;
161365a92638SMatthew G. Knepley   PetscInt    *lrows;
16146e520ac8SStefano Zampini   PetscInt     r, len;
161594342113SStefano Zampini   PetscBool    cong;
16160ac07820SSatish Balay 
1617d64ed03dSBarry Smith   PetscFunctionBegin;
16186e520ac8SStefano Zampini   /* get locally owned rows */
16199566063dSJacob Faibussowitsch   PetscCall(MatZeroRowsMapLocal_Private(A, N, rows, &len, &lrows));
1620dd8e379bSPierre Jolivet   /* fix right-hand side if needed */
162197b48c8fSBarry Smith   if (x && b) {
162265a92638SMatthew G. Knepley     const PetscScalar *xx;
162365a92638SMatthew G. Knepley     PetscScalar       *bb;
162465a92638SMatthew G. Knepley 
16259566063dSJacob Faibussowitsch     PetscCall(VecGetArrayRead(x, &xx));
16269566063dSJacob Faibussowitsch     PetscCall(VecGetArray(b, &bb));
162765a92638SMatthew G. Knepley     for (r = 0; r < len; ++r) bb[lrows[r]] = diag * xx[lrows[r]];
16289566063dSJacob Faibussowitsch     PetscCall(VecRestoreArrayRead(x, &xx));
16299566063dSJacob Faibussowitsch     PetscCall(VecRestoreArray(b, &bb));
163097b48c8fSBarry Smith   }
163197b48c8fSBarry Smith 
16320ac07820SSatish Balay   /* actually zap the local rows */
163372dacd9aSBarry Smith   /*
163472dacd9aSBarry Smith         Zero the required rows. If the "diagonal block" of the matrix
1635a8c7a070SBarry Smith      is square and the user wishes to set the diagonal we use separate
163672dacd9aSBarry Smith      code so that MatSetValues() is not called for each diagonal allocating
163772dacd9aSBarry Smith      new memory, thus calling lots of mallocs and slowing things down.
163872dacd9aSBarry Smith 
163972dacd9aSBarry Smith   */
16409c957beeSSatish Balay   /* must zero l->B before l->A because the (diag) case below may put values into l->B*/
16419566063dSJacob Faibussowitsch   PetscCall(MatZeroRows_SeqBAIJ(l->B, len, lrows, 0.0, NULL, NULL));
16429566063dSJacob Faibussowitsch   PetscCall(MatHasCongruentLayouts(A, &cong));
164394342113SStefano Zampini   if ((diag != 0.0) && cong) {
16449566063dSJacob Faibussowitsch     PetscCall(MatZeroRows_SeqBAIJ(l->A, len, lrows, diag, NULL, NULL));
1645f4df32b1SMatthew Knepley   } else if (diag != 0.0) {
16469566063dSJacob Faibussowitsch     PetscCall(MatZeroRows_SeqBAIJ(l->A, len, lrows, 0.0, NULL, NULL));
164700045ab3SPierre Jolivet     PetscCheck(!((Mat_SeqBAIJ *)l->A->data)->nonew, PETSC_COMM_SELF, PETSC_ERR_SUP, "MatZeroRows() on rectangular matrices cannot be used with the Mat options MAT_NEW_NONZERO_LOCATIONS, MAT_NEW_NONZERO_LOCATION_ERR, and MAT_NEW_NONZERO_ALLOCATION_ERR");
164865a92638SMatthew G. Knepley     for (r = 0; r < len; ++r) {
164965a92638SMatthew G. Knepley       const PetscInt row = lrows[r] + A->rmap->rstart;
16509566063dSJacob Faibussowitsch       PetscCall(MatSetValues(A, 1, &row, 1, &row, &diag, INSERT_VALUES));
1651a07cd24cSSatish Balay     }
16529566063dSJacob Faibussowitsch     PetscCall(MatAssemblyBegin(A, MAT_FINAL_ASSEMBLY));
16539566063dSJacob Faibussowitsch     PetscCall(MatAssemblyEnd(A, MAT_FINAL_ASSEMBLY));
16549c957beeSSatish Balay   } else {
16559566063dSJacob Faibussowitsch     PetscCall(MatZeroRows_SeqBAIJ(l->A, len, lrows, 0.0, NULL, NULL));
1656a07cd24cSSatish Balay   }
16579566063dSJacob Faibussowitsch   PetscCall(PetscFree(lrows));
16584f9cfa9eSBarry Smith 
16594f9cfa9eSBarry Smith   /* only change matrix nonzero state if pattern was allowed to be changed */
1660f4f49eeaSPierre Jolivet   if (!((Mat_SeqBAIJ *)l->A->data)->keepnonzeropattern || !((Mat_SeqBAIJ *)l->A->data)->nonew) {
1661e56f5c9eSBarry Smith     PetscObjectState state = l->A->nonzerostate + l->B->nonzerostate;
1662462c564dSBarry Smith     PetscCallMPI(MPIU_Allreduce(&state, &A->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)A)));
1663e56f5c9eSBarry Smith   }
16643ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
16650ac07820SSatish Balay }
166672dacd9aSBarry Smith 
166766976f2fSJacob Faibussowitsch static PetscErrorCode MatZeroRowsColumns_MPIBAIJ(Mat A, PetscInt N, const PetscInt rows[], PetscScalar diag, Vec x, Vec b)
1668d71ae5a4SJacob Faibussowitsch {
16696f0a72daSMatthew G. Knepley   Mat_MPIBAIJ       *l = (Mat_MPIBAIJ *)A->data;
16706497c311SBarry Smith   PetscMPIInt        n, p = 0;
1671131c27b5Sprj-   PetscInt           i, j, k, r, len = 0, row, col, count;
16726f0a72daSMatthew G. Knepley   PetscInt          *lrows, *owners = A->rmap->range;
16736f0a72daSMatthew G. Knepley   PetscSFNode       *rrows;
16746f0a72daSMatthew G. Knepley   PetscSF            sf;
16756f0a72daSMatthew G. Knepley   const PetscScalar *xx;
16766f0a72daSMatthew G. Knepley   PetscScalar       *bb, *mask;
16776f0a72daSMatthew G. Knepley   Vec                xmask, lmask;
16786f0a72daSMatthew G. Knepley   Mat_SeqBAIJ       *baij = (Mat_SeqBAIJ *)l->B->data;
16796f0a72daSMatthew G. Knepley   PetscInt           bs = A->rmap->bs, bs2 = baij->bs2;
16806f0a72daSMatthew G. Knepley   PetscScalar       *aa;
16816f0a72daSMatthew G. Knepley 
16826f0a72daSMatthew G. Knepley   PetscFunctionBegin;
16836497c311SBarry Smith   PetscCall(PetscMPIIntCast(A->rmap->n, &n));
16846f0a72daSMatthew G. Knepley   /* Create SF where leaves are input rows and roots are owned rows */
16859566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(n, &lrows));
16866f0a72daSMatthew G. Knepley   for (r = 0; r < n; ++r) lrows[r] = -1;
16879566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(N, &rrows));
16886f0a72daSMatthew G. Knepley   for (r = 0; r < N; ++r) {
16896f0a72daSMatthew G. Knepley     const PetscInt idx = rows[r];
16905f80ce2aSJacob Faibussowitsch     PetscCheck(idx >= 0 && A->rmap->N > idx, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row %" PetscInt_FMT " out of range [0,%" PetscInt_FMT ")", idx, A->rmap->N);
16915ba17502SJed Brown     if (idx < owners[p] || owners[p + 1] <= idx) { /* short-circuit the search if the last p owns this row too */
16929566063dSJacob Faibussowitsch       PetscCall(PetscLayoutFindOwner(A->rmap, idx, &p));
16935ba17502SJed Brown     }
16946f0a72daSMatthew G. Knepley     rrows[r].rank  = p;
16956f0a72daSMatthew G. Knepley     rrows[r].index = rows[r] - owners[p];
16966f0a72daSMatthew G. Knepley   }
16979566063dSJacob Faibussowitsch   PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)A), &sf));
16989566063dSJacob Faibussowitsch   PetscCall(PetscSFSetGraph(sf, n, N, NULL, PETSC_OWN_POINTER, rrows, PETSC_OWN_POINTER));
16996f0a72daSMatthew G. Knepley   /* Collect flags for rows to be zeroed */
17009566063dSJacob Faibussowitsch   PetscCall(PetscSFReduceBegin(sf, MPIU_INT, (PetscInt *)rows, lrows, MPI_LOR));
17019566063dSJacob Faibussowitsch   PetscCall(PetscSFReduceEnd(sf, MPIU_INT, (PetscInt *)rows, lrows, MPI_LOR));
17029566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&sf));
17036f0a72daSMatthew G. Knepley   /* Compress and put in row numbers */
17049371c9d4SSatish Balay   for (r = 0; r < n; ++r)
17059371c9d4SSatish Balay     if (lrows[r] >= 0) lrows[len++] = r;
17066f0a72daSMatthew G. Knepley   /* zero diagonal part of matrix */
17079566063dSJacob Faibussowitsch   PetscCall(MatZeroRowsColumns(l->A, len, lrows, diag, x, b));
17084cf0e950SBarry Smith   /* handle off-diagonal part of matrix */
17099566063dSJacob Faibussowitsch   PetscCall(MatCreateVecs(A, &xmask, NULL));
17109566063dSJacob Faibussowitsch   PetscCall(VecDuplicate(l->lvec, &lmask));
17119566063dSJacob Faibussowitsch   PetscCall(VecGetArray(xmask, &bb));
17126f0a72daSMatthew G. Knepley   for (i = 0; i < len; i++) bb[lrows[i]] = 1;
17139566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(xmask, &bb));
17149566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(l->Mvctx, xmask, lmask, ADD_VALUES, SCATTER_FORWARD));
17159566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(l->Mvctx, xmask, lmask, ADD_VALUES, SCATTER_FORWARD));
17169566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&xmask));
17176f0a72daSMatthew G. Knepley   if (x) {
17189566063dSJacob Faibussowitsch     PetscCall(VecScatterBegin(l->Mvctx, x, l->lvec, INSERT_VALUES, SCATTER_FORWARD));
17199566063dSJacob Faibussowitsch     PetscCall(VecScatterEnd(l->Mvctx, x, l->lvec, INSERT_VALUES, SCATTER_FORWARD));
17209566063dSJacob Faibussowitsch     PetscCall(VecGetArrayRead(l->lvec, &xx));
17219566063dSJacob Faibussowitsch     PetscCall(VecGetArray(b, &bb));
17226f0a72daSMatthew G. Knepley   }
17239566063dSJacob Faibussowitsch   PetscCall(VecGetArray(lmask, &mask));
17244cf0e950SBarry Smith   /* remove zeroed rows of off-diagonal matrix */
17256f0a72daSMatthew G. Knepley   for (i = 0; i < len; ++i) {
17266f0a72daSMatthew G. Knepley     row   = lrows[i];
17276f0a72daSMatthew G. Knepley     count = (baij->i[row / bs + 1] - baij->i[row / bs]) * bs;
1728f4f49eeaSPierre Jolivet     aa    = ((MatScalar *)baij->a) + baij->i[row / bs] * bs2 + (row % bs);
17296f0a72daSMatthew G. Knepley     for (k = 0; k < count; ++k) {
17306f0a72daSMatthew G. Knepley       aa[0] = 0.0;
17316f0a72daSMatthew G. Knepley       aa += bs;
17326f0a72daSMatthew G. Knepley     }
17336f0a72daSMatthew G. Knepley   }
17346f0a72daSMatthew G. Knepley   /* loop over all elements of off process part of matrix zeroing removed columns*/
17356f0a72daSMatthew G. Knepley   for (i = 0; i < l->B->rmap->N; ++i) {
17366f0a72daSMatthew G. Knepley     row = i / bs;
17376f0a72daSMatthew G. Knepley     for (j = baij->i[row]; j < baij->i[row + 1]; ++j) {
17386f0a72daSMatthew G. Knepley       for (k = 0; k < bs; ++k) {
17396f0a72daSMatthew G. Knepley         col = bs * baij->j[j] + k;
17406f0a72daSMatthew G. Knepley         if (PetscAbsScalar(mask[col])) {
1741f4f49eeaSPierre Jolivet           aa = ((MatScalar *)baij->a) + j * bs2 + (i % bs) + bs * k;
174289ae1891SBarry Smith           if (x) bb[i] -= aa[0] * xx[col];
17436f0a72daSMatthew G. Knepley           aa[0] = 0.0;
17446f0a72daSMatthew G. Knepley         }
17456f0a72daSMatthew G. Knepley       }
17466f0a72daSMatthew G. Knepley     }
17476f0a72daSMatthew G. Knepley   }
17486f0a72daSMatthew G. Knepley   if (x) {
17499566063dSJacob Faibussowitsch     PetscCall(VecRestoreArray(b, &bb));
17509566063dSJacob Faibussowitsch     PetscCall(VecRestoreArrayRead(l->lvec, &xx));
17516f0a72daSMatthew G. Knepley   }
17529566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(lmask, &mask));
17539566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&lmask));
17549566063dSJacob Faibussowitsch   PetscCall(PetscFree(lrows));
17554f9cfa9eSBarry Smith 
17564f9cfa9eSBarry Smith   /* only change matrix nonzero state if pattern was allowed to be changed */
1757f4f49eeaSPierre Jolivet   if (!((Mat_SeqBAIJ *)l->A->data)->nonew) {
17584f9cfa9eSBarry Smith     PetscObjectState state = l->A->nonzerostate + l->B->nonzerostate;
1759462c564dSBarry Smith     PetscCallMPI(MPIU_Allreduce(&state, &A->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)A)));
17604f9cfa9eSBarry Smith   }
17613ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
17626f0a72daSMatthew G. Knepley }
17636f0a72daSMatthew G. Knepley 
176466976f2fSJacob Faibussowitsch static PetscErrorCode MatSetUnfactored_MPIBAIJ(Mat A)
1765d71ae5a4SJacob Faibussowitsch {
1766bb5a7306SBarry Smith   Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data;
1767d64ed03dSBarry Smith 
1768d64ed03dSBarry Smith   PetscFunctionBegin;
17699566063dSJacob Faibussowitsch   PetscCall(MatSetUnfactored(a->A));
17703ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1771bb5a7306SBarry Smith }
1772bb5a7306SBarry Smith 
17736849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIBAIJ(Mat, MatDuplicateOption, Mat *);
17740ac07820SSatish Balay 
177566976f2fSJacob Faibussowitsch static PetscErrorCode MatEqual_MPIBAIJ(Mat A, Mat B, PetscBool *flag)
1776d71ae5a4SJacob Faibussowitsch {
17777fc3c18eSBarry Smith   Mat_MPIBAIJ *matB = (Mat_MPIBAIJ *)B->data, *matA = (Mat_MPIBAIJ *)A->data;
17787fc3c18eSBarry Smith   Mat          a, b, c, d;
1779ace3abfcSBarry Smith   PetscBool    flg;
17807fc3c18eSBarry Smith 
17817fc3c18eSBarry Smith   PetscFunctionBegin;
17829371c9d4SSatish Balay   a = matA->A;
17839371c9d4SSatish Balay   b = matA->B;
17849371c9d4SSatish Balay   c = matB->A;
17859371c9d4SSatish Balay   d = matB->B;
17867fc3c18eSBarry Smith 
17879566063dSJacob Faibussowitsch   PetscCall(MatEqual(a, c, &flg));
178848a46eb9SPierre Jolivet   if (flg) PetscCall(MatEqual(b, d, &flg));
1789462c564dSBarry Smith   PetscCallMPI(MPIU_Allreduce(&flg, flag, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)A)));
17903ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
17917fc3c18eSBarry Smith }
17927fc3c18eSBarry Smith 
179366976f2fSJacob Faibussowitsch static PetscErrorCode MatCopy_MPIBAIJ(Mat A, Mat B, MatStructure str)
1794d71ae5a4SJacob Faibussowitsch {
17953c896bc6SHong Zhang   Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data;
17963c896bc6SHong Zhang   Mat_MPIBAIJ *b = (Mat_MPIBAIJ *)B->data;
17973c896bc6SHong Zhang 
17983c896bc6SHong Zhang   PetscFunctionBegin;
17993c896bc6SHong Zhang   /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */
18003c896bc6SHong Zhang   if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) {
18019566063dSJacob Faibussowitsch     PetscCall(MatCopy_Basic(A, B, str));
18023c896bc6SHong Zhang   } else {
18039566063dSJacob Faibussowitsch     PetscCall(MatCopy(a->A, b->A, str));
18049566063dSJacob Faibussowitsch     PetscCall(MatCopy(a->B, b->B, str));
18053c896bc6SHong Zhang   }
18069566063dSJacob Faibussowitsch   PetscCall(PetscObjectStateIncrease((PetscObject)B));
18073ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
18083c896bc6SHong Zhang }
1809273d9f13SBarry Smith 
1810d71ae5a4SJacob Faibussowitsch PetscErrorCode MatAXPYGetPreallocation_MPIBAIJ(Mat Y, const PetscInt *yltog, Mat X, const PetscInt *xltog, PetscInt *nnz)
1811d71ae5a4SJacob Faibussowitsch {
1812001ddc4fSHong Zhang   PetscInt     bs = Y->rmap->bs, m = Y->rmap->N / bs;
18134de5dceeSHong Zhang   Mat_SeqBAIJ *x = (Mat_SeqBAIJ *)X->data;
18144de5dceeSHong Zhang   Mat_SeqBAIJ *y = (Mat_SeqBAIJ *)Y->data;
18154de5dceeSHong Zhang 
18164de5dceeSHong Zhang   PetscFunctionBegin;
18179566063dSJacob Faibussowitsch   PetscCall(MatAXPYGetPreallocation_MPIX_private(m, x->i, x->j, xltog, y->i, y->j, yltog, nnz));
18183ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
18194de5dceeSHong Zhang }
18204de5dceeSHong Zhang 
182166976f2fSJacob Faibussowitsch static PetscErrorCode MatAXPY_MPIBAIJ(Mat Y, PetscScalar a, Mat X, MatStructure str)
1822d71ae5a4SJacob Faibussowitsch {
18234fe895cdSHong Zhang   Mat_MPIBAIJ *xx = (Mat_MPIBAIJ *)X->data, *yy = (Mat_MPIBAIJ *)Y->data;
18244fe895cdSHong Zhang   PetscBLASInt bnz, one                         = 1;
18254fe895cdSHong Zhang   Mat_SeqBAIJ *x, *y;
1826b31f67cfSBarry Smith   PetscInt     bs2 = Y->rmap->bs * Y->rmap->bs;
18274fe895cdSHong Zhang 
18284fe895cdSHong Zhang   PetscFunctionBegin;
18294fe895cdSHong Zhang   if (str == SAME_NONZERO_PATTERN) {
18304fe895cdSHong Zhang     PetscScalar alpha = a;
18314fe895cdSHong Zhang     x                 = (Mat_SeqBAIJ *)xx->A->data;
18324fe895cdSHong Zhang     y                 = (Mat_SeqBAIJ *)yy->A->data;
18339566063dSJacob Faibussowitsch     PetscCall(PetscBLASIntCast(x->nz * bs2, &bnz));
1834792fecdfSBarry Smith     PetscCallBLAS("BLASaxpy", BLASaxpy_(&bnz, &alpha, x->a, &one, y->a, &one));
18354fe895cdSHong Zhang     x = (Mat_SeqBAIJ *)xx->B->data;
18364fe895cdSHong Zhang     y = (Mat_SeqBAIJ *)yy->B->data;
18379566063dSJacob Faibussowitsch     PetscCall(PetscBLASIntCast(x->nz * bs2, &bnz));
1838792fecdfSBarry Smith     PetscCallBLAS("BLASaxpy", BLASaxpy_(&bnz, &alpha, x->a, &one, y->a, &one));
18399566063dSJacob Faibussowitsch     PetscCall(PetscObjectStateIncrease((PetscObject)Y));
1840ab784542SHong Zhang   } else if (str == SUBSET_NONZERO_PATTERN) { /* nonzeros of X is a subset of Y's */
18419566063dSJacob Faibussowitsch     PetscCall(MatAXPY_Basic(Y, a, X, str));
18424fe895cdSHong Zhang   } else {
18434de5dceeSHong Zhang     Mat       B;
18444de5dceeSHong Zhang     PetscInt *nnz_d, *nnz_o, bs = Y->rmap->bs;
18459566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(yy->A->rmap->N, &nnz_d));
18469566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(yy->B->rmap->N, &nnz_o));
18479566063dSJacob Faibussowitsch     PetscCall(MatCreate(PetscObjectComm((PetscObject)Y), &B));
18489566063dSJacob Faibussowitsch     PetscCall(PetscObjectSetName((PetscObject)B, ((PetscObject)Y)->name));
18499566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(B, Y->rmap->n, Y->cmap->n, Y->rmap->N, Y->cmap->N));
18509566063dSJacob Faibussowitsch     PetscCall(MatSetBlockSizesFromMats(B, Y, Y));
18519566063dSJacob Faibussowitsch     PetscCall(MatSetType(B, MATMPIBAIJ));
18529566063dSJacob Faibussowitsch     PetscCall(MatAXPYGetPreallocation_SeqBAIJ(yy->A, xx->A, nnz_d));
18539566063dSJacob Faibussowitsch     PetscCall(MatAXPYGetPreallocation_MPIBAIJ(yy->B, yy->garray, xx->B, xx->garray, nnz_o));
18549566063dSJacob Faibussowitsch     PetscCall(MatMPIBAIJSetPreallocation(B, bs, 0, nnz_d, 0, nnz_o));
18554de5dceeSHong Zhang     /* MatAXPY_BasicWithPreallocation() for BAIJ matrix is much slower than AIJ, even for bs=1 ! */
18569566063dSJacob Faibussowitsch     PetscCall(MatAXPY_BasicWithPreallocation(B, Y, a, X, str));
18579566063dSJacob Faibussowitsch     PetscCall(MatHeaderMerge(Y, &B));
18589566063dSJacob Faibussowitsch     PetscCall(PetscFree(nnz_d));
18599566063dSJacob Faibussowitsch     PetscCall(PetscFree(nnz_o));
18604fe895cdSHong Zhang   }
18613ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
18624fe895cdSHong Zhang }
18634fe895cdSHong Zhang 
186466976f2fSJacob Faibussowitsch static PetscErrorCode MatConjugate_MPIBAIJ(Mat mat)
1865d71ae5a4SJacob Faibussowitsch {
18665f80ce2aSJacob Faibussowitsch   PetscFunctionBegin;
18675f80ce2aSJacob Faibussowitsch   if (PetscDefined(USE_COMPLEX)) {
18682726fb6dSPierre Jolivet     Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)mat->data;
18692726fb6dSPierre Jolivet 
18709566063dSJacob Faibussowitsch     PetscCall(MatConjugate_SeqBAIJ(a->A));
18719566063dSJacob Faibussowitsch     PetscCall(MatConjugate_SeqBAIJ(a->B));
18725f80ce2aSJacob Faibussowitsch   }
18733ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
18742726fb6dSPierre Jolivet }
18752726fb6dSPierre Jolivet 
187666976f2fSJacob Faibussowitsch static PetscErrorCode MatRealPart_MPIBAIJ(Mat A)
1877d71ae5a4SJacob Faibussowitsch {
187899cafbc1SBarry Smith   Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data;
187999cafbc1SBarry Smith 
188099cafbc1SBarry Smith   PetscFunctionBegin;
18819566063dSJacob Faibussowitsch   PetscCall(MatRealPart(a->A));
18829566063dSJacob Faibussowitsch   PetscCall(MatRealPart(a->B));
18833ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
188499cafbc1SBarry Smith }
188599cafbc1SBarry Smith 
188666976f2fSJacob Faibussowitsch static PetscErrorCode MatImaginaryPart_MPIBAIJ(Mat A)
1887d71ae5a4SJacob Faibussowitsch {
188899cafbc1SBarry Smith   Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data;
188999cafbc1SBarry Smith 
189099cafbc1SBarry Smith   PetscFunctionBegin;
18919566063dSJacob Faibussowitsch   PetscCall(MatImaginaryPart(a->A));
18929566063dSJacob Faibussowitsch   PetscCall(MatImaginaryPart(a->B));
18933ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
189499cafbc1SBarry Smith }
189599cafbc1SBarry Smith 
189666976f2fSJacob Faibussowitsch static PetscErrorCode MatCreateSubMatrix_MPIBAIJ(Mat mat, IS isrow, IS iscol, MatReuse call, Mat *newmat)
1897d71ae5a4SJacob Faibussowitsch {
18984aa3045dSJed Brown   IS       iscol_local;
18994aa3045dSJed Brown   PetscInt csize;
19004aa3045dSJed Brown 
19014aa3045dSJed Brown   PetscFunctionBegin;
19029566063dSJacob Faibussowitsch   PetscCall(ISGetLocalSize(iscol, &csize));
1903b79d0421SJed Brown   if (call == MAT_REUSE_MATRIX) {
19049566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)*newmat, "ISAllGather", (PetscObject *)&iscol_local));
19055f80ce2aSJacob Faibussowitsch     PetscCheck(iscol_local, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Submatrix passed in was not used before, cannot reuse");
1906b79d0421SJed Brown   } else {
19079566063dSJacob Faibussowitsch     PetscCall(ISAllGather(iscol, &iscol_local));
1908b79d0421SJed Brown   }
1909fdfbdca6SPierre Jolivet   PetscCall(MatCreateSubMatrix_MPIBAIJ_Private(mat, isrow, iscol_local, csize, call, newmat, PETSC_FALSE));
1910b79d0421SJed Brown   if (call == MAT_INITIAL_MATRIX) {
19119566063dSJacob Faibussowitsch     PetscCall(PetscObjectCompose((PetscObject)*newmat, "ISAllGather", (PetscObject)iscol_local));
19129566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&iscol_local));
1913b79d0421SJed Brown   }
19143ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
19154aa3045dSJed Brown }
191617df9f7cSHong Zhang 
191782094794SBarry Smith /*
191882094794SBarry Smith   Not great since it makes two copies of the submatrix, first an SeqBAIJ
191982094794SBarry Smith   in local and then by concatenating the local matrices the end result.
19207dae84e0SHong Zhang   Writing it directly would be much like MatCreateSubMatrices_MPIBAIJ().
19218f46ffcaSHong Zhang   This routine is used for BAIJ and SBAIJ matrices (unfortunate dependency).
192282094794SBarry Smith */
1923fdfbdca6SPierre Jolivet PetscErrorCode MatCreateSubMatrix_MPIBAIJ_Private(Mat mat, IS isrow, IS iscol, PetscInt csize, MatReuse call, Mat *newmat, PetscBool sym)
1924d71ae5a4SJacob Faibussowitsch {
192582094794SBarry Smith   PetscMPIInt  rank, size;
192682094794SBarry Smith   PetscInt     i, m, n, rstart, row, rend, nz, *cwork, j, bs;
1927c9ffca76SHong Zhang   PetscInt    *ii, *jj, nlocal, *dlens, *olens, dlen, olen, jend, mglobal;
192829dcf524SDmitry Karpeev   Mat          M, Mreuse;
192982094794SBarry Smith   MatScalar   *vwork, *aa;
1930ce94432eSBarry Smith   MPI_Comm     comm;
193129dcf524SDmitry Karpeev   IS           isrow_new, iscol_new;
193282094794SBarry Smith   Mat_SeqBAIJ *aij;
193382094794SBarry Smith 
193482094794SBarry Smith   PetscFunctionBegin;
19359566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)mat, &comm));
19369566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(comm, &rank));
19379566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
193829dcf524SDmitry Karpeev   /* The compression and expansion should be avoided. Doesn't point
193929dcf524SDmitry Karpeev      out errors, might change the indices, hence buggey */
19409566063dSJacob Faibussowitsch   PetscCall(ISCompressIndicesGeneral(mat->rmap->N, mat->rmap->n, mat->rmap->bs, 1, &isrow, &isrow_new));
1941864bd19bSPierre Jolivet   if (isrow == iscol) {
1942864bd19bSPierre Jolivet     iscol_new = isrow_new;
1943864bd19bSPierre Jolivet     PetscCall(PetscObjectReference((PetscObject)iscol_new));
1944864bd19bSPierre Jolivet   } else PetscCall(ISCompressIndicesGeneral(mat->cmap->N, mat->cmap->n, mat->cmap->bs, 1, &iscol, &iscol_new));
194582094794SBarry Smith 
194682094794SBarry Smith   if (call == MAT_REUSE_MATRIX) {
19479566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)*newmat, "SubMatrix", (PetscObject *)&Mreuse));
19485f80ce2aSJacob Faibussowitsch     PetscCheck(Mreuse, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Submatrix passed in was not used before, cannot reuse");
1949fdfbdca6SPierre Jolivet     PetscCall(MatCreateSubMatrices_MPIBAIJ_local(mat, 1, &isrow_new, &iscol_new, MAT_REUSE_MATRIX, &Mreuse, sym));
195082094794SBarry Smith   } else {
1951fdfbdca6SPierre Jolivet     PetscCall(MatCreateSubMatrices_MPIBAIJ_local(mat, 1, &isrow_new, &iscol_new, MAT_INITIAL_MATRIX, &Mreuse, sym));
195282094794SBarry Smith   }
19539566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&isrow_new));
19549566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&iscol_new));
195582094794SBarry Smith   /*
195682094794SBarry Smith       m - number of local rows
195782094794SBarry Smith       n - number of columns (same on all processors)
195882094794SBarry Smith       rstart - first row in new global matrix generated
195982094794SBarry Smith   */
19609566063dSJacob Faibussowitsch   PetscCall(MatGetBlockSize(mat, &bs));
19619566063dSJacob Faibussowitsch   PetscCall(MatGetSize(Mreuse, &m, &n));
196282094794SBarry Smith   m = m / bs;
196382094794SBarry Smith   n = n / bs;
196482094794SBarry Smith 
196582094794SBarry Smith   if (call == MAT_INITIAL_MATRIX) {
196657508eceSPierre Jolivet     aij = (Mat_SeqBAIJ *)Mreuse->data;
196782094794SBarry Smith     ii  = aij->i;
196882094794SBarry Smith     jj  = aij->j;
196982094794SBarry Smith 
197082094794SBarry Smith     /*
197182094794SBarry Smith         Determine the number of non-zeros in the diagonal and off-diagonal
197282094794SBarry Smith         portions of the matrix in order to do correct preallocation
197382094794SBarry Smith     */
197482094794SBarry Smith 
197582094794SBarry Smith     /* first get start and end of "diagonal" columns */
197682094794SBarry Smith     if (csize == PETSC_DECIDE) {
19779566063dSJacob Faibussowitsch       PetscCall(ISGetSize(isrow, &mglobal));
197882094794SBarry Smith       if (mglobal == n * bs) { /* square matrix */
197982094794SBarry Smith         nlocal = m;
198082094794SBarry Smith       } else {
198182094794SBarry Smith         nlocal = n / size + ((n % size) > rank);
198282094794SBarry Smith       }
198382094794SBarry Smith     } else {
198482094794SBarry Smith       nlocal = csize / bs;
198582094794SBarry Smith     }
19869566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Scan(&nlocal, &rend, 1, MPIU_INT, MPI_SUM, comm));
198782094794SBarry Smith     rstart = rend - nlocal;
1988aed4548fSBarry Smith     PetscCheck(rank != size - 1 || rend == n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Local column sizes %" PetscInt_FMT " do not add up to total number of columns %" PetscInt_FMT, rend, n);
198982094794SBarry Smith 
199082094794SBarry Smith     /* next, compute all the lengths */
19919566063dSJacob Faibussowitsch     PetscCall(PetscMalloc2(m + 1, &dlens, m + 1, &olens));
199282094794SBarry Smith     for (i = 0; i < m; i++) {
199382094794SBarry Smith       jend = ii[i + 1] - ii[i];
199482094794SBarry Smith       olen = 0;
199582094794SBarry Smith       dlen = 0;
199682094794SBarry Smith       for (j = 0; j < jend; j++) {
199782094794SBarry Smith         if (*jj < rstart || *jj >= rend) olen++;
199882094794SBarry Smith         else dlen++;
199982094794SBarry Smith         jj++;
200082094794SBarry Smith       }
200182094794SBarry Smith       olens[i] = olen;
200282094794SBarry Smith       dlens[i] = dlen;
200382094794SBarry Smith     }
20049566063dSJacob Faibussowitsch     PetscCall(MatCreate(comm, &M));
20059566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(M, bs * m, bs * nlocal, PETSC_DECIDE, bs * n));
2006fdfbdca6SPierre Jolivet     PetscCall(MatSetType(M, sym ? ((PetscObject)mat)->type_name : MATMPIBAIJ));
20079566063dSJacob Faibussowitsch     PetscCall(MatMPIBAIJSetPreallocation(M, bs, 0, dlens, 0, olens));
20089566063dSJacob Faibussowitsch     PetscCall(MatMPISBAIJSetPreallocation(M, bs, 0, dlens, 0, olens));
20099566063dSJacob Faibussowitsch     PetscCall(PetscFree2(dlens, olens));
201082094794SBarry Smith   } else {
201182094794SBarry Smith     PetscInt ml, nl;
201282094794SBarry Smith 
201382094794SBarry Smith     M = *newmat;
20149566063dSJacob Faibussowitsch     PetscCall(MatGetLocalSize(M, &ml, &nl));
20155f80ce2aSJacob Faibussowitsch     PetscCheck(ml == m, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Previous matrix must be same size/layout as request");
20169566063dSJacob Faibussowitsch     PetscCall(MatZeroEntries(M));
201782094794SBarry Smith     /*
201882094794SBarry Smith          The next two lines are needed so we may call MatSetValues_MPIAIJ() below directly,
201982094794SBarry Smith        rather than the slower MatSetValues().
202082094794SBarry Smith     */
202182094794SBarry Smith     M->was_assembled = PETSC_TRUE;
202282094794SBarry Smith     M->assembled     = PETSC_FALSE;
202382094794SBarry Smith   }
20249566063dSJacob Faibussowitsch   PetscCall(MatSetOption(M, MAT_ROW_ORIENTED, PETSC_FALSE));
20259566063dSJacob Faibussowitsch   PetscCall(MatGetOwnershipRange(M, &rstart, &rend));
202657508eceSPierre Jolivet   aij = (Mat_SeqBAIJ *)Mreuse->data;
202782094794SBarry Smith   ii  = aij->i;
202882094794SBarry Smith   jj  = aij->j;
202982094794SBarry Smith   aa  = aij->a;
203082094794SBarry Smith   for (i = 0; i < m; i++) {
203182094794SBarry Smith     row   = rstart / bs + i;
203282094794SBarry Smith     nz    = ii[i + 1] - ii[i];
20339371c9d4SSatish Balay     cwork = jj;
20348e3a54c0SPierre Jolivet     jj    = PetscSafePointerPlusOffset(jj, nz);
20359371c9d4SSatish Balay     vwork = aa;
20368e3a54c0SPierre Jolivet     aa    = PetscSafePointerPlusOffset(aa, nz * bs * bs);
20379566063dSJacob Faibussowitsch     PetscCall(MatSetValuesBlocked_MPIBAIJ(M, 1, &row, nz, cwork, vwork, INSERT_VALUES));
203882094794SBarry Smith   }
203982094794SBarry Smith 
20409566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(M, MAT_FINAL_ASSEMBLY));
20419566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(M, MAT_FINAL_ASSEMBLY));
204282094794SBarry Smith   *newmat = M;
204382094794SBarry Smith 
204482094794SBarry Smith   /* save submatrix used in processor for next request */
204582094794SBarry Smith   if (call == MAT_INITIAL_MATRIX) {
20469566063dSJacob Faibussowitsch     PetscCall(PetscObjectCompose((PetscObject)M, "SubMatrix", (PetscObject)Mreuse));
20479566063dSJacob Faibussowitsch     PetscCall(PetscObjectDereference((PetscObject)Mreuse));
204882094794SBarry Smith   }
20493ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
205082094794SBarry Smith }
205182094794SBarry Smith 
205266976f2fSJacob Faibussowitsch static PetscErrorCode MatPermute_MPIBAIJ(Mat A, IS rowp, IS colp, Mat *B)
2053d71ae5a4SJacob Faibussowitsch {
205482094794SBarry Smith   MPI_Comm        comm, pcomm;
2055a0a83eb5SRémi Lacroix   PetscInt        clocal_size, nrows;
205682094794SBarry Smith   const PetscInt *rows;
2057dbf0e21dSBarry Smith   PetscMPIInt     size;
2058a0a83eb5SRémi Lacroix   IS              crowp, lcolp;
205982094794SBarry Smith 
206082094794SBarry Smith   PetscFunctionBegin;
20619566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)A, &comm));
206282094794SBarry Smith   /* make a collective version of 'rowp' */
20639566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)rowp, &pcomm));
206482094794SBarry Smith   if (pcomm == comm) {
206582094794SBarry Smith     crowp = rowp;
206682094794SBarry Smith   } else {
20679566063dSJacob Faibussowitsch     PetscCall(ISGetSize(rowp, &nrows));
20689566063dSJacob Faibussowitsch     PetscCall(ISGetIndices(rowp, &rows));
20699566063dSJacob Faibussowitsch     PetscCall(ISCreateGeneral(comm, nrows, rows, PETSC_COPY_VALUES, &crowp));
20709566063dSJacob Faibussowitsch     PetscCall(ISRestoreIndices(rowp, &rows));
207182094794SBarry Smith   }
20729566063dSJacob Faibussowitsch   PetscCall(ISSetPermutation(crowp));
2073a0a83eb5SRémi Lacroix   /* make a local version of 'colp' */
20749566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)colp, &pcomm));
20759566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(pcomm, &size));
2076dbf0e21dSBarry Smith   if (size == 1) {
207782094794SBarry Smith     lcolp = colp;
207882094794SBarry Smith   } else {
20799566063dSJacob Faibussowitsch     PetscCall(ISAllGather(colp, &lcolp));
208082094794SBarry Smith   }
20819566063dSJacob Faibussowitsch   PetscCall(ISSetPermutation(lcolp));
208275f6568bSJed Brown   /* now we just get the submatrix */
20839566063dSJacob Faibussowitsch   PetscCall(MatGetLocalSize(A, NULL, &clocal_size));
2084fdfbdca6SPierre Jolivet   PetscCall(MatCreateSubMatrix_MPIBAIJ_Private(A, crowp, lcolp, clocal_size, MAT_INITIAL_MATRIX, B, PETSC_FALSE));
2085a0a83eb5SRémi Lacroix   /* clean up */
208648a46eb9SPierre Jolivet   if (pcomm != comm) PetscCall(ISDestroy(&crowp));
208748a46eb9SPierre Jolivet   if (size > 1) PetscCall(ISDestroy(&lcolp));
20883ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
208982094794SBarry Smith }
209082094794SBarry Smith 
209166976f2fSJacob Faibussowitsch static PetscErrorCode MatGetGhosts_MPIBAIJ(Mat mat, PetscInt *nghosts, const PetscInt *ghosts[])
2092d71ae5a4SJacob Faibussowitsch {
20938c7482ecSBarry Smith   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data;
20948c7482ecSBarry Smith   Mat_SeqBAIJ *B    = (Mat_SeqBAIJ *)baij->B->data;
20958c7482ecSBarry Smith 
20968c7482ecSBarry Smith   PetscFunctionBegin;
209726fbe8dcSKarl Rupp   if (nghosts) *nghosts = B->nbs;
209826fbe8dcSKarl Rupp   if (ghosts) *ghosts = baij->garray;
20993ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
21008c7482ecSBarry Smith }
21018c7482ecSBarry Smith 
210266976f2fSJacob Faibussowitsch static PetscErrorCode MatGetSeqNonzeroStructure_MPIBAIJ(Mat A, Mat *newmat)
2103d71ae5a4SJacob Faibussowitsch {
2104f6d58c54SBarry Smith   Mat          B;
2105f6d58c54SBarry Smith   Mat_MPIBAIJ *a  = (Mat_MPIBAIJ *)A->data;
2106f6d58c54SBarry Smith   Mat_SeqBAIJ *ad = (Mat_SeqBAIJ *)a->A->data, *bd = (Mat_SeqBAIJ *)a->B->data;
2107f6d58c54SBarry Smith   Mat_SeqAIJ  *b;
2108f4259b30SLisandro Dalcin   PetscMPIInt  size, rank, *recvcounts = NULL, *displs = NULL;
2109f6d58c54SBarry Smith   PetscInt     sendcount, i, *rstarts = A->rmap->range, n, cnt, j, bs = A->rmap->bs;
2110f6d58c54SBarry Smith   PetscInt     m, *garray = a->garray, *lens, *jsendbuf, *a_jsendbuf, *b_jsendbuf;
2111f6d58c54SBarry Smith 
2112f6d58c54SBarry Smith   PetscFunctionBegin;
21139566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)A), &size));
21149566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)A), &rank));
2115f6d58c54SBarry Smith 
21162ef1f0ffSBarry Smith   /*   Tell every processor the number of nonzeros per row  */
21179566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(A->rmap->N / bs, &lens));
2118ad540459SPierre Jolivet   for (i = A->rmap->rstart / bs; i < A->rmap->rend / bs; i++) lens[i] = ad->i[i - A->rmap->rstart / bs + 1] - ad->i[i - A->rmap->rstart / bs] + bd->i[i - A->rmap->rstart / bs + 1] - bd->i[i - A->rmap->rstart / bs];
21199566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(2 * size, &recvcounts));
2120f6d58c54SBarry Smith   displs = recvcounts + size;
2121f6d58c54SBarry Smith   for (i = 0; i < size; i++) {
21226497c311SBarry Smith     PetscCall(PetscMPIIntCast(A->rmap->range[i + 1] / bs - A->rmap->range[i] / bs, &recvcounts[i]));
21236497c311SBarry Smith     PetscCall(PetscMPIIntCast(A->rmap->range[i] / bs, &displs[i]));
2124f6d58c54SBarry Smith   }
21259566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Allgatherv(MPI_IN_PLACE, 0, MPI_DATATYPE_NULL, lens, recvcounts, displs, MPIU_INT, PetscObjectComm((PetscObject)A)));
21262ef1f0ffSBarry Smith   /* Create the sequential matrix of the same type as the local block diagonal  */
21279566063dSJacob Faibussowitsch   PetscCall(MatCreate(PETSC_COMM_SELF, &B));
21289566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(B, A->rmap->N / bs, A->cmap->N / bs, PETSC_DETERMINE, PETSC_DETERMINE));
21299566063dSJacob Faibussowitsch   PetscCall(MatSetType(B, MATSEQAIJ));
21309566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJSetPreallocation(B, 0, lens));
2131f6d58c54SBarry Smith   b = (Mat_SeqAIJ *)B->data;
2132f6d58c54SBarry Smith 
21332ef1f0ffSBarry Smith   /*     Copy my part of matrix column indices over  */
2134f6d58c54SBarry Smith   sendcount  = ad->nz + bd->nz;
2135f6d58c54SBarry Smith   jsendbuf   = b->j + b->i[rstarts[rank] / bs];
2136f6d58c54SBarry Smith   a_jsendbuf = ad->j;
2137f6d58c54SBarry Smith   b_jsendbuf = bd->j;
2138f6d58c54SBarry Smith   n          = A->rmap->rend / bs - A->rmap->rstart / bs;
2139f6d58c54SBarry Smith   cnt        = 0;
2140f6d58c54SBarry Smith   for (i = 0; i < n; i++) {
2141f6d58c54SBarry Smith     /* put in lower diagonal portion */
2142f6d58c54SBarry Smith     m = bd->i[i + 1] - bd->i[i];
2143f6d58c54SBarry Smith     while (m > 0) {
2144f6d58c54SBarry Smith       /* is it above diagonal (in bd (compressed) numbering) */
2145f6d58c54SBarry Smith       if (garray[*b_jsendbuf] > A->rmap->rstart / bs + i) break;
2146f6d58c54SBarry Smith       jsendbuf[cnt++] = garray[*b_jsendbuf++];
2147f6d58c54SBarry Smith       m--;
2148f6d58c54SBarry Smith     }
2149f6d58c54SBarry Smith 
2150f6d58c54SBarry Smith     /* put in diagonal portion */
2151ad540459SPierre Jolivet     for (j = ad->i[i]; j < ad->i[i + 1]; j++) jsendbuf[cnt++] = A->rmap->rstart / bs + *a_jsendbuf++;
2152f6d58c54SBarry Smith 
2153f6d58c54SBarry Smith     /* put in upper diagonal portion */
2154ad540459SPierre Jolivet     while (m-- > 0) jsendbuf[cnt++] = garray[*b_jsendbuf++];
2155f6d58c54SBarry Smith   }
21565f80ce2aSJacob Faibussowitsch   PetscCheck(cnt == sendcount, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Corrupted PETSc matrix: nz given %" PetscInt_FMT " actual nz %" PetscInt_FMT, sendcount, cnt);
2157f6d58c54SBarry Smith 
21582ef1f0ffSBarry Smith   /*  Gather all column indices to all processors  */
2159f6d58c54SBarry Smith   for (i = 0; i < size; i++) {
2160f6d58c54SBarry Smith     recvcounts[i] = 0;
2161ad540459SPierre Jolivet     for (j = A->rmap->range[i] / bs; j < A->rmap->range[i + 1] / bs; j++) recvcounts[i] += lens[j];
2162f6d58c54SBarry Smith   }
2163f6d58c54SBarry Smith   displs[0] = 0;
2164ad540459SPierre Jolivet   for (i = 1; i < size; i++) displs[i] = displs[i - 1] + recvcounts[i - 1];
21659566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Allgatherv(MPI_IN_PLACE, 0, MPI_DATATYPE_NULL, b->j, recvcounts, displs, MPIU_INT, PetscObjectComm((PetscObject)A)));
21665804573cSPierre Jolivet   /*  Assemble the matrix into usable form (note numerical values not yet set)  */
2167f6d58c54SBarry Smith   /* set the b->ilen (length of each row) values */
21689566063dSJacob Faibussowitsch   PetscCall(PetscArraycpy(b->ilen, lens, A->rmap->N / bs));
2169f6d58c54SBarry Smith   /* set the b->i indices */
2170f6d58c54SBarry Smith   b->i[0] = 0;
2171ad540459SPierre Jolivet   for (i = 1; i <= A->rmap->N / bs; i++) b->i[i] = b->i[i - 1] + lens[i - 1];
21729566063dSJacob Faibussowitsch   PetscCall(PetscFree(lens));
21739566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY));
21749566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY));
21759566063dSJacob Faibussowitsch   PetscCall(PetscFree(recvcounts));
2176f6d58c54SBarry Smith 
2177b94d7dedSBarry Smith   PetscCall(MatPropagateSymmetryOptions(A, B));
2178f6d58c54SBarry Smith   *newmat = B;
21793ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2180f6d58c54SBarry Smith }
2181f6d58c54SBarry Smith 
218266976f2fSJacob Faibussowitsch static PetscErrorCode MatSOR_MPIBAIJ(Mat matin, Vec bb, PetscReal omega, MatSORType flag, PetscReal fshift, PetscInt its, PetscInt lits, Vec xx)
2183d71ae5a4SJacob Faibussowitsch {
2184b1a666ecSBarry Smith   Mat_MPIBAIJ *mat = (Mat_MPIBAIJ *)matin->data;
2185f4259b30SLisandro Dalcin   Vec          bb1 = NULL;
2186b1a666ecSBarry Smith 
2187b1a666ecSBarry Smith   PetscFunctionBegin;
2188b1a666ecSBarry Smith   if (flag == SOR_APPLY_UPPER) {
21899566063dSJacob Faibussowitsch     PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx));
21903ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
2191b1a666ecSBarry Smith   }
2192b1a666ecSBarry Smith 
219348a46eb9SPierre Jolivet   if (its > 1 || ~flag & SOR_ZERO_INITIAL_GUESS) PetscCall(VecDuplicate(bb, &bb1));
21944e980039SJed Brown 
2195b1a666ecSBarry Smith   if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP) {
2196b1a666ecSBarry Smith     if (flag & SOR_ZERO_INITIAL_GUESS) {
21979566063dSJacob Faibussowitsch       PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx));
2198b1a666ecSBarry Smith       its--;
2199b1a666ecSBarry Smith     }
2200b1a666ecSBarry Smith 
2201b1a666ecSBarry Smith     while (its--) {
22029566063dSJacob Faibussowitsch       PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD));
22039566063dSJacob Faibussowitsch       PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD));
2204b1a666ecSBarry Smith 
2205b1a666ecSBarry Smith       /* update rhs: bb1 = bb - B*x */
22069566063dSJacob Faibussowitsch       PetscCall(VecScale(mat->lvec, -1.0));
22079566063dSJacob Faibussowitsch       PetscCall((*mat->B->ops->multadd)(mat->B, mat->lvec, bb, bb1));
2208b1a666ecSBarry Smith 
2209b1a666ecSBarry Smith       /* local sweep */
22109566063dSJacob Faibussowitsch       PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, SOR_SYMMETRIC_SWEEP, fshift, lits, 1, xx));
2211b1a666ecSBarry Smith     }
2212b1a666ecSBarry Smith   } else if (flag & SOR_LOCAL_FORWARD_SWEEP) {
2213b1a666ecSBarry Smith     if (flag & SOR_ZERO_INITIAL_GUESS) {
22149566063dSJacob Faibussowitsch       PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx));
2215b1a666ecSBarry Smith       its--;
2216b1a666ecSBarry Smith     }
2217b1a666ecSBarry Smith     while (its--) {
22189566063dSJacob Faibussowitsch       PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD));
22199566063dSJacob Faibussowitsch       PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD));
2220b1a666ecSBarry Smith 
2221b1a666ecSBarry Smith       /* update rhs: bb1 = bb - B*x */
22229566063dSJacob Faibussowitsch       PetscCall(VecScale(mat->lvec, -1.0));
22239566063dSJacob Faibussowitsch       PetscCall((*mat->B->ops->multadd)(mat->B, mat->lvec, bb, bb1));
2224b1a666ecSBarry Smith 
2225b1a666ecSBarry Smith       /* local sweep */
22269566063dSJacob Faibussowitsch       PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, SOR_FORWARD_SWEEP, fshift, lits, 1, xx));
2227b1a666ecSBarry Smith     }
2228b1a666ecSBarry Smith   } else if (flag & SOR_LOCAL_BACKWARD_SWEEP) {
2229b1a666ecSBarry Smith     if (flag & SOR_ZERO_INITIAL_GUESS) {
22309566063dSJacob Faibussowitsch       PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx));
2231b1a666ecSBarry Smith       its--;
2232b1a666ecSBarry Smith     }
2233b1a666ecSBarry Smith     while (its--) {
22349566063dSJacob Faibussowitsch       PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD));
22359566063dSJacob Faibussowitsch       PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD));
2236b1a666ecSBarry Smith 
2237b1a666ecSBarry Smith       /* update rhs: bb1 = bb - B*x */
22389566063dSJacob Faibussowitsch       PetscCall(VecScale(mat->lvec, -1.0));
22399566063dSJacob Faibussowitsch       PetscCall((*mat->B->ops->multadd)(mat->B, mat->lvec, bb, bb1));
2240b1a666ecSBarry Smith 
2241b1a666ecSBarry Smith       /* local sweep */
22429566063dSJacob Faibussowitsch       PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, SOR_BACKWARD_SWEEP, fshift, lits, 1, xx));
2243b1a666ecSBarry Smith     }
2244ce94432eSBarry Smith   } else SETERRQ(PetscObjectComm((PetscObject)matin), PETSC_ERR_SUP, "Parallel version of SOR requested not supported");
2245b1a666ecSBarry Smith 
22469566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&bb1));
22473ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2248b1a666ecSBarry Smith }
2249b1a666ecSBarry Smith 
225066976f2fSJacob Faibussowitsch static PetscErrorCode MatGetColumnReductions_MPIBAIJ(Mat A, PetscInt type, PetscReal *reductions)
2251d71ae5a4SJacob Faibussowitsch {
225247f7623dSRémi Lacroix   Mat_MPIBAIJ *aij = (Mat_MPIBAIJ *)A->data;
2253a873a8cdSSam Reynolds   PetscInt     m, N, i, *garray = aij->garray;
225447f7623dSRémi Lacroix   PetscInt     ib, jb, bs = A->rmap->bs;
225547f7623dSRémi Lacroix   Mat_SeqBAIJ *a_aij = (Mat_SeqBAIJ *)aij->A->data;
225647f7623dSRémi Lacroix   MatScalar   *a_val = a_aij->a;
225747f7623dSRémi Lacroix   Mat_SeqBAIJ *b_aij = (Mat_SeqBAIJ *)aij->B->data;
225847f7623dSRémi Lacroix   MatScalar   *b_val = b_aij->a;
225947f7623dSRémi Lacroix   PetscReal   *work;
22606497c311SBarry Smith   PetscMPIInt  iN;
226147f7623dSRémi Lacroix 
226247f7623dSRémi Lacroix   PetscFunctionBegin;
22639566063dSJacob Faibussowitsch   PetscCall(MatGetSize(A, &m, &N));
22649566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(N, &work));
2265857cbf51SRichard Tran Mills   if (type == NORM_2) {
226647f7623dSRémi Lacroix     for (i = a_aij->i[0]; i < a_aij->i[aij->A->rmap->n / bs]; i++) {
226747f7623dSRémi Lacroix       for (jb = 0; jb < bs; jb++) {
226847f7623dSRémi Lacroix         for (ib = 0; ib < bs; ib++) {
226947f7623dSRémi Lacroix           work[A->cmap->rstart + a_aij->j[i] * bs + jb] += PetscAbsScalar(*a_val * *a_val);
227047f7623dSRémi Lacroix           a_val++;
227147f7623dSRémi Lacroix         }
227247f7623dSRémi Lacroix       }
227347f7623dSRémi Lacroix     }
227447f7623dSRémi Lacroix     for (i = b_aij->i[0]; i < b_aij->i[aij->B->rmap->n / bs]; i++) {
227547f7623dSRémi Lacroix       for (jb = 0; jb < bs; jb++) {
227647f7623dSRémi Lacroix         for (ib = 0; ib < bs; ib++) {
227747f7623dSRémi Lacroix           work[garray[b_aij->j[i]] * bs + jb] += PetscAbsScalar(*b_val * *b_val);
227847f7623dSRémi Lacroix           b_val++;
227947f7623dSRémi Lacroix         }
228047f7623dSRémi Lacroix       }
228147f7623dSRémi Lacroix     }
2282857cbf51SRichard Tran Mills   } else if (type == NORM_1) {
228347f7623dSRémi Lacroix     for (i = a_aij->i[0]; i < a_aij->i[aij->A->rmap->n / bs]; i++) {
228447f7623dSRémi Lacroix       for (jb = 0; jb < bs; jb++) {
228547f7623dSRémi Lacroix         for (ib = 0; ib < bs; ib++) {
228647f7623dSRémi Lacroix           work[A->cmap->rstart + a_aij->j[i] * bs + jb] += PetscAbsScalar(*a_val);
228747f7623dSRémi Lacroix           a_val++;
228847f7623dSRémi Lacroix         }
228947f7623dSRémi Lacroix       }
229047f7623dSRémi Lacroix     }
229147f7623dSRémi Lacroix     for (i = b_aij->i[0]; i < b_aij->i[aij->B->rmap->n / bs]; i++) {
229247f7623dSRémi Lacroix       for (jb = 0; jb < bs; jb++) {
229347f7623dSRémi Lacroix         for (ib = 0; ib < bs; ib++) {
229447f7623dSRémi Lacroix           work[garray[b_aij->j[i]] * bs + jb] += PetscAbsScalar(*b_val);
229547f7623dSRémi Lacroix           b_val++;
229647f7623dSRémi Lacroix         }
229747f7623dSRémi Lacroix       }
229847f7623dSRémi Lacroix     }
2299857cbf51SRichard Tran Mills   } else if (type == NORM_INFINITY) {
230047f7623dSRémi Lacroix     for (i = a_aij->i[0]; i < a_aij->i[aij->A->rmap->n / bs]; i++) {
230147f7623dSRémi Lacroix       for (jb = 0; jb < bs; jb++) {
230247f7623dSRémi Lacroix         for (ib = 0; ib < bs; ib++) {
23036497c311SBarry Smith           PetscInt col = A->cmap->rstart + a_aij->j[i] * bs + jb;
230447f7623dSRémi Lacroix           work[col]    = PetscMax(PetscAbsScalar(*a_val), work[col]);
230547f7623dSRémi Lacroix           a_val++;
230647f7623dSRémi Lacroix         }
230747f7623dSRémi Lacroix       }
230847f7623dSRémi Lacroix     }
230947f7623dSRémi Lacroix     for (i = b_aij->i[0]; i < b_aij->i[aij->B->rmap->n / bs]; i++) {
231047f7623dSRémi Lacroix       for (jb = 0; jb < bs; jb++) {
231147f7623dSRémi Lacroix         for (ib = 0; ib < bs; ib++) {
23126497c311SBarry Smith           PetscInt col = garray[b_aij->j[i]] * bs + jb;
231347f7623dSRémi Lacroix           work[col]    = PetscMax(PetscAbsScalar(*b_val), work[col]);
231447f7623dSRémi Lacroix           b_val++;
231547f7623dSRémi Lacroix         }
231647f7623dSRémi Lacroix       }
231747f7623dSRémi Lacroix     }
2318857cbf51SRichard Tran Mills   } else if (type == REDUCTION_SUM_REALPART || type == REDUCTION_MEAN_REALPART) {
2319a873a8cdSSam Reynolds     for (i = a_aij->i[0]; i < a_aij->i[aij->A->rmap->n / bs]; i++) {
2320a873a8cdSSam Reynolds       for (jb = 0; jb < bs; jb++) {
2321a873a8cdSSam Reynolds         for (ib = 0; ib < bs; ib++) {
2322857cbf51SRichard Tran Mills           work[A->cmap->rstart + a_aij->j[i] * bs + jb] += PetscRealPart(*a_val);
2323a873a8cdSSam Reynolds           a_val++;
2324a873a8cdSSam Reynolds         }
2325a873a8cdSSam Reynolds       }
2326a873a8cdSSam Reynolds     }
2327a873a8cdSSam Reynolds     for (i = b_aij->i[0]; i < b_aij->i[aij->B->rmap->n / bs]; i++) {
2328a873a8cdSSam Reynolds       for (jb = 0; jb < bs; jb++) {
2329a873a8cdSSam Reynolds         for (ib = 0; ib < bs; ib++) {
2330857cbf51SRichard Tran Mills           work[garray[b_aij->j[i]] * bs + jb] += PetscRealPart(*b_val);
2331a873a8cdSSam Reynolds           b_val++;
2332a873a8cdSSam Reynolds         }
2333a873a8cdSSam Reynolds       }
2334a873a8cdSSam Reynolds     }
2335857cbf51SRichard Tran Mills   } else if (type == REDUCTION_SUM_IMAGINARYPART || type == REDUCTION_MEAN_IMAGINARYPART) {
2336857cbf51SRichard Tran Mills     for (i = a_aij->i[0]; i < a_aij->i[aij->A->rmap->n / bs]; i++) {
2337857cbf51SRichard Tran Mills       for (jb = 0; jb < bs; jb++) {
2338857cbf51SRichard Tran Mills         for (ib = 0; ib < bs; ib++) {
2339857cbf51SRichard Tran Mills           work[A->cmap->rstart + a_aij->j[i] * bs + jb] += PetscImaginaryPart(*a_val);
2340857cbf51SRichard Tran Mills           a_val++;
2341857cbf51SRichard Tran Mills         }
2342857cbf51SRichard Tran Mills       }
2343857cbf51SRichard Tran Mills     }
2344857cbf51SRichard Tran Mills     for (i = b_aij->i[0]; i < b_aij->i[aij->B->rmap->n / bs]; i++) {
2345857cbf51SRichard Tran Mills       for (jb = 0; jb < bs; jb++) {
2346857cbf51SRichard Tran Mills         for (ib = 0; ib < bs; ib++) {
2347857cbf51SRichard Tran Mills           work[garray[b_aij->j[i]] * bs + jb] += PetscImaginaryPart(*b_val);
2348857cbf51SRichard Tran Mills           b_val++;
2349857cbf51SRichard Tran Mills         }
2350857cbf51SRichard Tran Mills       }
2351857cbf51SRichard Tran Mills     }
2352857cbf51SRichard Tran Mills   } else SETERRQ(PetscObjectComm((PetscObject)A), PETSC_ERR_ARG_WRONG, "Unknown reduction type");
23536497c311SBarry Smith   PetscCall(PetscMPIIntCast(N, &iN));
2354857cbf51SRichard Tran Mills   if (type == NORM_INFINITY) {
2355462c564dSBarry Smith     PetscCallMPI(MPIU_Allreduce(work, reductions, iN, MPIU_REAL, MPIU_MAX, PetscObjectComm((PetscObject)A)));
235647f7623dSRémi Lacroix   } else {
2357462c564dSBarry Smith     PetscCallMPI(MPIU_Allreduce(work, reductions, iN, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)A)));
235847f7623dSRémi Lacroix   }
23599566063dSJacob Faibussowitsch   PetscCall(PetscFree(work));
2360857cbf51SRichard Tran Mills   if (type == NORM_2) {
2361a873a8cdSSam Reynolds     for (i = 0; i < N; i++) reductions[i] = PetscSqrtReal(reductions[i]);
2362857cbf51SRichard Tran Mills   } else if (type == REDUCTION_MEAN_REALPART || type == REDUCTION_MEAN_IMAGINARYPART) {
2363a873a8cdSSam Reynolds     for (i = 0; i < N; i++) reductions[i] /= m;
236447f7623dSRémi Lacroix   }
23653ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
236647f7623dSRémi Lacroix }
236747f7623dSRémi Lacroix 
236866976f2fSJacob Faibussowitsch static PetscErrorCode MatInvertBlockDiagonal_MPIBAIJ(Mat A, const PetscScalar **values)
2369d71ae5a4SJacob Faibussowitsch {
2370bbead8a2SBarry Smith   Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data;
2371bbead8a2SBarry Smith 
2372bbead8a2SBarry Smith   PetscFunctionBegin;
23739566063dSJacob Faibussowitsch   PetscCall(MatInvertBlockDiagonal(a->A, values));
23747b6c816cSBarry Smith   A->factorerrortype             = a->A->factorerrortype;
23757b6c816cSBarry Smith   A->factorerror_zeropivot_value = a->A->factorerror_zeropivot_value;
23767b6c816cSBarry Smith   A->factorerror_zeropivot_row   = a->A->factorerror_zeropivot_row;
23773ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2378bbead8a2SBarry Smith }
2379bbead8a2SBarry Smith 
238066976f2fSJacob Faibussowitsch static PetscErrorCode MatShift_MPIBAIJ(Mat Y, PetscScalar a)
2381d71ae5a4SJacob Faibussowitsch {
23827d68702bSBarry Smith   Mat_MPIBAIJ *maij = (Mat_MPIBAIJ *)Y->data;
23836f33a894SBarry Smith   Mat_SeqBAIJ *aij  = (Mat_SeqBAIJ *)maij->A->data;
23847d68702bSBarry Smith 
23857d68702bSBarry Smith   PetscFunctionBegin;
23866f33a894SBarry Smith   if (!Y->preallocated) {
23879566063dSJacob Faibussowitsch     PetscCall(MatMPIBAIJSetPreallocation(Y, Y->rmap->bs, 1, NULL, 0, NULL));
23886f33a894SBarry Smith   } else if (!aij->nz) {
2389b83222d8SBarry Smith     PetscInt nonew = aij->nonew;
23909566063dSJacob Faibussowitsch     PetscCall(MatSeqBAIJSetPreallocation(maij->A, Y->rmap->bs, 1, NULL));
2391b83222d8SBarry Smith     aij->nonew = nonew;
23927d68702bSBarry Smith   }
23939566063dSJacob Faibussowitsch   PetscCall(MatShift_Basic(Y, a));
23943ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
23957d68702bSBarry Smith }
23968c7482ecSBarry Smith 
239766976f2fSJacob Faibussowitsch static PetscErrorCode MatMissingDiagonal_MPIBAIJ(Mat A, PetscBool *missing, PetscInt *d)
2398d71ae5a4SJacob Faibussowitsch {
23993b49f96aSBarry Smith   Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data;
24003b49f96aSBarry Smith 
24013b49f96aSBarry Smith   PetscFunctionBegin;
24025f80ce2aSJacob Faibussowitsch   PetscCheck(A->rmap->n == A->cmap->n, PETSC_COMM_SELF, PETSC_ERR_SUP, "Only works for square matrices");
24039566063dSJacob Faibussowitsch   PetscCall(MatMissingDiagonal(a->A, missing, d));
24043b49f96aSBarry Smith   if (d) {
24053b49f96aSBarry Smith     PetscInt rstart;
24069566063dSJacob Faibussowitsch     PetscCall(MatGetOwnershipRange(A, &rstart, NULL));
24073b49f96aSBarry Smith     *d += rstart / A->rmap->bs;
24083b49f96aSBarry Smith   }
24093ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
24103b49f96aSBarry Smith }
24113b49f96aSBarry Smith 
241266976f2fSJacob Faibussowitsch static PetscErrorCode MatGetDiagonalBlock_MPIBAIJ(Mat A, Mat *a)
2413d71ae5a4SJacob Faibussowitsch {
2414a5b7ff6bSBarry Smith   PetscFunctionBegin;
2415a5b7ff6bSBarry Smith   *a = ((Mat_MPIBAIJ *)A->data)->A;
24163ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2417a5b7ff6bSBarry Smith }
2418a5b7ff6bSBarry Smith 
241917ea310bSPierre Jolivet static PetscErrorCode MatEliminateZeros_MPIBAIJ(Mat A, PetscBool keep)
242017ea310bSPierre Jolivet {
242117ea310bSPierre Jolivet   Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data;
242217ea310bSPierre Jolivet 
242317ea310bSPierre Jolivet   PetscFunctionBegin;
242417ea310bSPierre Jolivet   PetscCall(MatEliminateZeros_SeqBAIJ(a->A, keep));        // possibly keep zero diagonal coefficients
242517ea310bSPierre Jolivet   PetscCall(MatEliminateZeros_SeqBAIJ(a->B, PETSC_FALSE)); // never keep zero diagonal coefficients
242617ea310bSPierre Jolivet   PetscFunctionReturn(PETSC_SUCCESS);
242717ea310bSPierre Jolivet }
242817ea310bSPierre Jolivet 
24293964eb88SJed Brown static struct _MatOps MatOps_Values = {MatSetValues_MPIBAIJ,
2430cc2dc46cSBarry Smith                                        MatGetRow_MPIBAIJ,
2431cc2dc46cSBarry Smith                                        MatRestoreRow_MPIBAIJ,
2432cc2dc46cSBarry Smith                                        MatMult_MPIBAIJ,
243397304618SKris Buschelman                                        /* 4*/ MatMultAdd_MPIBAIJ,
24347c922b88SBarry Smith                                        MatMultTranspose_MPIBAIJ,
24357c922b88SBarry Smith                                        MatMultTransposeAdd_MPIBAIJ,
2436f4259b30SLisandro Dalcin                                        NULL,
2437f4259b30SLisandro Dalcin                                        NULL,
2438f4259b30SLisandro Dalcin                                        NULL,
2439f4259b30SLisandro Dalcin                                        /*10*/ NULL,
2440f4259b30SLisandro Dalcin                                        NULL,
2441f4259b30SLisandro Dalcin                                        NULL,
2442b1a666ecSBarry Smith                                        MatSOR_MPIBAIJ,
2443cc2dc46cSBarry Smith                                        MatTranspose_MPIBAIJ,
244497304618SKris Buschelman                                        /*15*/ MatGetInfo_MPIBAIJ,
24457fc3c18eSBarry Smith                                        MatEqual_MPIBAIJ,
2446cc2dc46cSBarry Smith                                        MatGetDiagonal_MPIBAIJ,
2447cc2dc46cSBarry Smith                                        MatDiagonalScale_MPIBAIJ,
2448cc2dc46cSBarry Smith                                        MatNorm_MPIBAIJ,
244997304618SKris Buschelman                                        /*20*/ MatAssemblyBegin_MPIBAIJ,
2450cc2dc46cSBarry Smith                                        MatAssemblyEnd_MPIBAIJ,
2451cc2dc46cSBarry Smith                                        MatSetOption_MPIBAIJ,
2452cc2dc46cSBarry Smith                                        MatZeroEntries_MPIBAIJ,
2453d519adbfSMatthew Knepley                                        /*24*/ MatZeroRows_MPIBAIJ,
2454f4259b30SLisandro Dalcin                                        NULL,
2455f4259b30SLisandro Dalcin                                        NULL,
2456f4259b30SLisandro Dalcin                                        NULL,
2457f4259b30SLisandro Dalcin                                        NULL,
245826cec326SBarry Smith                                        /*29*/ MatSetUp_MPI_Hash,
2459f4259b30SLisandro Dalcin                                        NULL,
2460f4259b30SLisandro Dalcin                                        NULL,
2461a5b7ff6bSBarry Smith                                        MatGetDiagonalBlock_MPIBAIJ,
2462f4259b30SLisandro Dalcin                                        NULL,
2463d519adbfSMatthew Knepley                                        /*34*/ MatDuplicate_MPIBAIJ,
2464f4259b30SLisandro Dalcin                                        NULL,
2465f4259b30SLisandro Dalcin                                        NULL,
2466f4259b30SLisandro Dalcin                                        NULL,
2467f4259b30SLisandro Dalcin                                        NULL,
2468d519adbfSMatthew Knepley                                        /*39*/ MatAXPY_MPIBAIJ,
24697dae84e0SHong Zhang                                        MatCreateSubMatrices_MPIBAIJ,
2470cc2dc46cSBarry Smith                                        MatIncreaseOverlap_MPIBAIJ,
2471cc2dc46cSBarry Smith                                        MatGetValues_MPIBAIJ,
24723c896bc6SHong Zhang                                        MatCopy_MPIBAIJ,
2473f4259b30SLisandro Dalcin                                        /*44*/ NULL,
2474cc2dc46cSBarry Smith                                        MatScale_MPIBAIJ,
24757d68702bSBarry Smith                                        MatShift_MPIBAIJ,
2476f4259b30SLisandro Dalcin                                        NULL,
24776f0a72daSMatthew G. Knepley                                        MatZeroRowsColumns_MPIBAIJ,
2478f4259b30SLisandro Dalcin                                        /*49*/ NULL,
2479f4259b30SLisandro Dalcin                                        NULL,
2480f4259b30SLisandro Dalcin                                        NULL,
2481f4259b30SLisandro Dalcin                                        NULL,
2482f4259b30SLisandro Dalcin                                        NULL,
248393dfae19SHong Zhang                                        /*54*/ MatFDColoringCreate_MPIXAIJ,
2484f4259b30SLisandro Dalcin                                        NULL,
2485cc2dc46cSBarry Smith                                        MatSetUnfactored_MPIBAIJ,
248682094794SBarry Smith                                        MatPermute_MPIBAIJ,
2487cc2dc46cSBarry Smith                                        MatSetValuesBlocked_MPIBAIJ,
24887dae84e0SHong Zhang                                        /*59*/ MatCreateSubMatrix_MPIBAIJ,
2489f14a1c24SBarry Smith                                        MatDestroy_MPIBAIJ,
2490f14a1c24SBarry Smith                                        MatView_MPIBAIJ,
2491f4259b30SLisandro Dalcin                                        NULL,
2492f4259b30SLisandro Dalcin                                        NULL,
2493f4259b30SLisandro Dalcin                                        /*64*/ NULL,
2494f4259b30SLisandro Dalcin                                        NULL,
2495f4259b30SLisandro Dalcin                                        NULL,
2496f4259b30SLisandro Dalcin                                        NULL,
2497f4259b30SLisandro Dalcin                                        NULL,
2498d519adbfSMatthew Knepley                                        /*69*/ MatGetRowMaxAbs_MPIBAIJ,
2499f4259b30SLisandro Dalcin                                        NULL,
2500f4259b30SLisandro Dalcin                                        NULL,
2501f4259b30SLisandro Dalcin                                        NULL,
2502f4259b30SLisandro Dalcin                                        NULL,
2503f4259b30SLisandro Dalcin                                        /*74*/ NULL,
2504f6d58c54SBarry Smith                                        MatFDColoringApply_BAIJ,
2505f4259b30SLisandro Dalcin                                        NULL,
2506f4259b30SLisandro Dalcin                                        NULL,
2507f4259b30SLisandro Dalcin                                        NULL,
2508f4259b30SLisandro Dalcin                                        /*79*/ NULL,
2509f4259b30SLisandro Dalcin                                        NULL,
2510f4259b30SLisandro Dalcin                                        NULL,
2511f4259b30SLisandro Dalcin                                        NULL,
25125bba2384SShri Abhyankar                                        MatLoad_MPIBAIJ,
2513f4259b30SLisandro Dalcin                                        /*84*/ NULL,
2514f4259b30SLisandro Dalcin                                        NULL,
2515f4259b30SLisandro Dalcin                                        NULL,
2516f4259b30SLisandro Dalcin                                        NULL,
2517f4259b30SLisandro Dalcin                                        NULL,
2518f4259b30SLisandro Dalcin                                        /*89*/ NULL,
2519f4259b30SLisandro Dalcin                                        NULL,
2520f4259b30SLisandro Dalcin                                        NULL,
2521f4259b30SLisandro Dalcin                                        NULL,
2522f4259b30SLisandro Dalcin                                        NULL,
2523f4259b30SLisandro Dalcin                                        /*94*/ NULL,
2524f4259b30SLisandro Dalcin                                        NULL,
2525f4259b30SLisandro Dalcin                                        NULL,
2526f4259b30SLisandro Dalcin                                        NULL,
2527f4259b30SLisandro Dalcin                                        NULL,
2528f4259b30SLisandro Dalcin                                        /*99*/ NULL,
2529f4259b30SLisandro Dalcin                                        NULL,
2530f4259b30SLisandro Dalcin                                        NULL,
25312726fb6dSPierre Jolivet                                        MatConjugate_MPIBAIJ,
2532f4259b30SLisandro Dalcin                                        NULL,
2533f4259b30SLisandro Dalcin                                        /*104*/ NULL,
253499cafbc1SBarry Smith                                        MatRealPart_MPIBAIJ,
25358c7482ecSBarry Smith                                        MatImaginaryPart_MPIBAIJ,
2536f4259b30SLisandro Dalcin                                        NULL,
2537f4259b30SLisandro Dalcin                                        NULL,
2538f4259b30SLisandro Dalcin                                        /*109*/ NULL,
2539f4259b30SLisandro Dalcin                                        NULL,
2540f4259b30SLisandro Dalcin                                        NULL,
2541f4259b30SLisandro Dalcin                                        NULL,
25423b49f96aSBarry Smith                                        MatMissingDiagonal_MPIBAIJ,
2543d1adec66SJed Brown                                        /*114*/ MatGetSeqNonzeroStructure_MPIBAIJ,
2544f4259b30SLisandro Dalcin                                        NULL,
25454683f7a4SShri Abhyankar                                        MatGetGhosts_MPIBAIJ,
2546f4259b30SLisandro Dalcin                                        NULL,
2547f4259b30SLisandro Dalcin                                        NULL,
2548f4259b30SLisandro Dalcin                                        /*119*/ NULL,
2549f4259b30SLisandro Dalcin                                        NULL,
2550f4259b30SLisandro Dalcin                                        NULL,
2551f4259b30SLisandro Dalcin                                        NULL,
2552e8271787SHong Zhang                                        MatGetMultiProcBlock_MPIBAIJ,
2553f4259b30SLisandro Dalcin                                        /*124*/ NULL,
2554a873a8cdSSam Reynolds                                        MatGetColumnReductions_MPIBAIJ,
25553964eb88SJed Brown                                        MatInvertBlockDiagonal_MPIBAIJ,
2556f4259b30SLisandro Dalcin                                        NULL,
2557f4259b30SLisandro Dalcin                                        NULL,
2558f4259b30SLisandro Dalcin                                        /*129*/ NULL,
2559f4259b30SLisandro Dalcin                                        NULL,
2560f4259b30SLisandro Dalcin                                        NULL,
2561f4259b30SLisandro Dalcin                                        NULL,
2562f4259b30SLisandro Dalcin                                        NULL,
2563f4259b30SLisandro Dalcin                                        /*134*/ NULL,
2564f4259b30SLisandro Dalcin                                        NULL,
2565f4259b30SLisandro Dalcin                                        NULL,
2566f4259b30SLisandro Dalcin                                        NULL,
2567f4259b30SLisandro Dalcin                                        NULL,
256846533700Sstefano_zampini                                        /*139*/ MatSetBlockSizes_Default,
2569f4259b30SLisandro Dalcin                                        NULL,
2570f4259b30SLisandro Dalcin                                        NULL,
2571bdf6f3fcSHong Zhang                                        MatFDColoringSetUp_MPIXAIJ,
2572f4259b30SLisandro Dalcin                                        NULL,
2573d70f29a3SPierre Jolivet                                        /*144*/ MatCreateMPIMatConcatenateSeqMat_MPIBAIJ,
2574d70f29a3SPierre Jolivet                                        NULL,
2575d70f29a3SPierre Jolivet                                        NULL,
257699a7f59eSMark Adams                                        NULL,
257799a7f59eSMark Adams                                        NULL,
25787fb60732SBarry Smith                                        NULL,
2579dec0b466SHong Zhang                                        /*150*/ NULL,
2580eede4a3fSMark Adams                                        MatEliminateZeros_MPIBAIJ,
25814cc2b5b5SPierre Jolivet                                        MatGetRowSumAbs_MPIBAIJ,
258242ce410bSJunchao Zhang                                        NULL,
258342ce410bSJunchao Zhang                                        NULL,
25844cc2b5b5SPierre Jolivet                                        NULL};
258579bdfe76SSatish Balay 
2586cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIBAIJ_MPISBAIJ(Mat, MatType, MatReuse, Mat *);
2587c9225affSStefano Zampini PETSC_INTERN PetscErrorCode MatConvert_XAIJ_IS(Mat, MatType, MatReuse, Mat *);
2588d94109b8SHong Zhang 
258966976f2fSJacob Faibussowitsch static PetscErrorCode MatMPIBAIJSetPreallocationCSR_MPIBAIJ(Mat B, PetscInt bs, const PetscInt ii[], const PetscInt jj[], const PetscScalar V[])
2590d71ae5a4SJacob Faibussowitsch {
2591b8d659d7SLisandro Dalcin   PetscInt        m, rstart, cstart, cend;
2592f4259b30SLisandro Dalcin   PetscInt        i, j, dlen, olen, nz, nz_max = 0, *d_nnz = NULL, *o_nnz = NULL;
2593f4259b30SLisandro Dalcin   const PetscInt *JJ          = NULL;
2594f4259b30SLisandro Dalcin   PetscScalar    *values      = NULL;
2595d47bf9aaSJed Brown   PetscBool       roworiented = ((Mat_MPIBAIJ *)B->data)->roworiented;
25963bd0feecSPierre Jolivet   PetscBool       nooffprocentries;
2597aac34f13SBarry Smith 
2598aac34f13SBarry Smith   PetscFunctionBegin;
25999566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetBlockSize(B->rmap, bs));
26009566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetBlockSize(B->cmap, bs));
26019566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(B->rmap));
26029566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(B->cmap));
26039566063dSJacob Faibussowitsch   PetscCall(PetscLayoutGetBlockSize(B->rmap, &bs));
2604d0f46423SBarry Smith   m      = B->rmap->n / bs;
2605d0f46423SBarry Smith   rstart = B->rmap->rstart / bs;
2606d0f46423SBarry Smith   cstart = B->cmap->rstart / bs;
2607d0f46423SBarry Smith   cend   = B->cmap->rend / bs;
2608b8d659d7SLisandro Dalcin 
26095f80ce2aSJacob Faibussowitsch   PetscCheck(!ii[0], PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "ii[0] must be 0 but it is %" PetscInt_FMT, ii[0]);
26109566063dSJacob Faibussowitsch   PetscCall(PetscMalloc2(m, &d_nnz, m, &o_nnz));
2611aac34f13SBarry Smith   for (i = 0; i < m; i++) {
2612cf12db73SBarry Smith     nz = ii[i + 1] - ii[i];
26135f80ce2aSJacob Faibussowitsch     PetscCheck(nz >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Local row %" PetscInt_FMT " has a negative number of columns %" PetscInt_FMT, i, nz);
2614b8d659d7SLisandro Dalcin     nz_max = PetscMax(nz_max, nz);
261537cd3c0dSBarry Smith     dlen   = 0;
261637cd3c0dSBarry Smith     olen   = 0;
2617cf12db73SBarry Smith     JJ     = jj + ii[i];
2618b8d659d7SLisandro Dalcin     for (j = 0; j < nz; j++) {
261937cd3c0dSBarry Smith       if (*JJ < cstart || *JJ >= cend) olen++;
262037cd3c0dSBarry Smith       else dlen++;
2621aac34f13SBarry Smith       JJ++;
2622aac34f13SBarry Smith     }
262337cd3c0dSBarry Smith     d_nnz[i] = dlen;
262437cd3c0dSBarry Smith     o_nnz[i] = olen;
2625aac34f13SBarry Smith   }
26269566063dSJacob Faibussowitsch   PetscCall(MatMPIBAIJSetPreallocation(B, bs, 0, d_nnz, 0, o_nnz));
26279566063dSJacob Faibussowitsch   PetscCall(PetscFree2(d_nnz, o_nnz));
2628aac34f13SBarry Smith 
2629b8d659d7SLisandro Dalcin   values = (PetscScalar *)V;
263048a46eb9SPierre Jolivet   if (!values) PetscCall(PetscCalloc1(bs * bs * nz_max, &values));
2631b8d659d7SLisandro Dalcin   for (i = 0; i < m; i++) {
2632b8d659d7SLisandro Dalcin     PetscInt        row   = i + rstart;
2633cf12db73SBarry Smith     PetscInt        ncols = ii[i + 1] - ii[i];
2634cf12db73SBarry Smith     const PetscInt *icols = jj + ii[i];
2635bb80cfbbSStefano Zampini     if (bs == 1 || !roworiented) { /* block ordering matches the non-nested layout of MatSetValues so we can insert entire rows */
2636cf12db73SBarry Smith       const PetscScalar *svals = values + (V ? (bs * bs * ii[i]) : 0);
26379566063dSJacob Faibussowitsch       PetscCall(MatSetValuesBlocked_MPIBAIJ(B, 1, &row, ncols, icols, svals, INSERT_VALUES));
26383adadaf3SJed Brown     } else { /* block ordering does not match so we can only insert one block at a time. */
26393adadaf3SJed Brown       PetscInt j;
26403adadaf3SJed Brown       for (j = 0; j < ncols; j++) {
26413adadaf3SJed Brown         const PetscScalar *svals = values + (V ? (bs * bs * (ii[i] + j)) : 0);
26429566063dSJacob Faibussowitsch         PetscCall(MatSetValuesBlocked_MPIBAIJ(B, 1, &row, 1, &icols[j], svals, INSERT_VALUES));
26433adadaf3SJed Brown       }
26443adadaf3SJed Brown     }
2645aac34f13SBarry Smith   }
2646aac34f13SBarry Smith 
26479566063dSJacob Faibussowitsch   if (!V) PetscCall(PetscFree(values));
26483bd0feecSPierre Jolivet   nooffprocentries    = B->nooffprocentries;
26493bd0feecSPierre Jolivet   B->nooffprocentries = PETSC_TRUE;
26509566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY));
26519566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY));
26523bd0feecSPierre Jolivet   B->nooffprocentries = nooffprocentries;
26533bd0feecSPierre Jolivet 
26549566063dSJacob Faibussowitsch   PetscCall(MatSetOption(B, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE));
26553ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2656aac34f13SBarry Smith }
2657aac34f13SBarry Smith 
2658aac34f13SBarry Smith /*@C
265911a5261eSBarry Smith   MatMPIBAIJSetPreallocationCSR - Creates a sparse parallel matrix in `MATBAIJ` format using the given nonzero structure and (optional) numerical values
2660aac34f13SBarry Smith 
2661d083f849SBarry Smith   Collective
2662aac34f13SBarry Smith 
2663aac34f13SBarry Smith   Input Parameters:
26641c4f3114SJed Brown + B  - the matrix
2665dfb205c3SBarry Smith . bs - the block size
266620f4b53cSBarry Smith . i  - the indices into `j` for the start of each local row (starts with zero)
2667aac34f13SBarry Smith . j  - the column indices for each local row (starts with zero) these must be sorted for each row
2668d8a51d2aSBarry Smith - v  - optional values in the matrix, use `NULL` if not provided
2669aac34f13SBarry Smith 
2670664954b6SBarry Smith   Level: advanced
2671aac34f13SBarry Smith 
267295452b02SPatrick Sanan   Notes:
2673d8a51d2aSBarry Smith   The `i`, `j`, and `v` arrays ARE copied by this routine into the internal format used by PETSc;
2674d8a51d2aSBarry Smith   thus you CANNOT change the matrix entries by changing the values of `v` after you have
2675d8a51d2aSBarry Smith   called this routine.
2676d8a51d2aSBarry Smith 
267711a5261eSBarry Smith   The order of the entries in values is specified by the `MatOption` `MAT_ROW_ORIENTED`.  For example, C programs
267811a5261eSBarry Smith   may want to use the default `MAT_ROW_ORIENTED` with value `PETSC_TRUE` and use an array v[nnz][bs][bs] where the second index is
26793adadaf3SJed Brown   over rows within a block and the last index is over columns within a block row.  Fortran programs will likely set
268011a5261eSBarry Smith   `MAT_ROW_ORIENTED` with value `PETSC_FALSE` and use a Fortran array v(bs,bs,nnz) in which the first index is over rows within a
26813adadaf3SJed Brown   block column and the second index is over columns within a block.
26823adadaf3SJed Brown 
2683664954b6SBarry Smith   Though this routine has Preallocation() in the name it also sets the exact nonzero locations of the matrix entries and usually the numerical values as well
2684664954b6SBarry Smith 
26857d2c085eSPierre Jolivet .seealso: `Mat`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIBAIJSetPreallocation()`, `MatCreateAIJ()`, `MATMPIAIJ`, `MatCreateMPIBAIJWithArrays()`, `MATMPIBAIJ`
2686aac34f13SBarry Smith @*/
2687d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIBAIJSetPreallocationCSR(Mat B, PetscInt bs, const PetscInt i[], const PetscInt j[], const PetscScalar v[])
2688d71ae5a4SJacob Faibussowitsch {
2689aac34f13SBarry Smith   PetscFunctionBegin;
26906ba663aaSJed Brown   PetscValidHeaderSpecific(B, MAT_CLASSID, 1);
26916ba663aaSJed Brown   PetscValidType(B, 1);
26926ba663aaSJed Brown   PetscValidLogicalCollectiveInt(B, bs, 2);
2693cac4c232SBarry Smith   PetscTryMethod(B, "MatMPIBAIJSetPreallocationCSR_C", (Mat, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[]), (B, bs, i, j, v));
26943ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2695aac34f13SBarry Smith }
2696aac34f13SBarry Smith 
2697d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIBAIJSetPreallocation_MPIBAIJ(Mat B, PetscInt bs, PetscInt d_nz, const PetscInt *d_nnz, PetscInt o_nz, const PetscInt *o_nnz)
2698d71ae5a4SJacob Faibussowitsch {
2699ad79cf63SBarry Smith   Mat_MPIBAIJ *b = (Mat_MPIBAIJ *)B->data;
2700535b19f3SBarry Smith   PetscInt     i;
27015d2a9ed1SStefano Zampini   PetscMPIInt  size;
2702a23d5eceSKris Buschelman 
2703a23d5eceSKris Buschelman   PetscFunctionBegin;
2704ad79cf63SBarry Smith   if (B->hash_active) {
2705aea10558SJacob Faibussowitsch     B->ops[0]      = b->cops;
2706ad79cf63SBarry Smith     B->hash_active = PETSC_FALSE;
2707ad79cf63SBarry Smith   }
2708ad79cf63SBarry Smith   if (!B->preallocated) PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)B), bs, &B->bstash));
27099566063dSJacob Faibussowitsch   PetscCall(MatSetBlockSize(B, PetscAbs(bs)));
27109566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(B->rmap));
27119566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(B->cmap));
27129566063dSJacob Faibussowitsch   PetscCall(PetscLayoutGetBlockSize(B->rmap, &bs));
2713899cda47SBarry Smith 
2714a23d5eceSKris Buschelman   if (d_nnz) {
2715ad540459SPierre Jolivet     for (i = 0; i < B->rmap->n / bs; i++) PetscCheck(d_nnz[i] >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "d_nnz cannot be less than -1: local row %" PetscInt_FMT " value %" PetscInt_FMT, i, d_nnz[i]);
2716a23d5eceSKris Buschelman   }
2717a23d5eceSKris Buschelman   if (o_nnz) {
2718ad540459SPierre Jolivet     for (i = 0; i < B->rmap->n / bs; i++) PetscCheck(o_nnz[i] >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "o_nnz cannot be less than -1: local row %" PetscInt_FMT " value %" PetscInt_FMT, i, o_nnz[i]);
2719a23d5eceSKris Buschelman   }
2720a23d5eceSKris Buschelman 
2721a23d5eceSKris Buschelman   b->bs2 = bs * bs;
2722d0f46423SBarry Smith   b->mbs = B->rmap->n / bs;
2723d0f46423SBarry Smith   b->nbs = B->cmap->n / bs;
2724d0f46423SBarry Smith   b->Mbs = B->rmap->N / bs;
2725d0f46423SBarry Smith   b->Nbs = B->cmap->N / bs;
2726a23d5eceSKris Buschelman 
2727ad540459SPierre Jolivet   for (i = 0; i <= b->size; i++) b->rangebs[i] = B->rmap->range[i] / bs;
2728d0f46423SBarry Smith   b->rstartbs = B->rmap->rstart / bs;
2729d0f46423SBarry Smith   b->rendbs   = B->rmap->rend / bs;
2730d0f46423SBarry Smith   b->cstartbs = B->cmap->rstart / bs;
2731d0f46423SBarry Smith   b->cendbs   = B->cmap->rend / bs;
2732a23d5eceSKris Buschelman 
2733cb7b82ddSBarry Smith #if defined(PETSC_USE_CTABLE)
2734eec179cfSJacob Faibussowitsch   PetscCall(PetscHMapIDestroy(&b->colmap));
2735cb7b82ddSBarry Smith #else
27369566063dSJacob Faibussowitsch   PetscCall(PetscFree(b->colmap));
2737cb7b82ddSBarry Smith #endif
27389566063dSJacob Faibussowitsch   PetscCall(PetscFree(b->garray));
27399566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&b->lvec));
27409566063dSJacob Faibussowitsch   PetscCall(VecScatterDestroy(&b->Mvctx));
2741cb7b82ddSBarry Smith 
27429566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)B), &size));
2743c508b908SBarry Smith 
2744c508b908SBarry Smith   MatSeqXAIJGetOptions_Private(b->B);
27459566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&b->B));
27469566063dSJacob Faibussowitsch   PetscCall(MatCreate(PETSC_COMM_SELF, &b->B));
27479566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(b->B, B->rmap->n, size > 1 ? B->cmap->N : 0, B->rmap->n, size > 1 ? B->cmap->N : 0));
27489566063dSJacob Faibussowitsch   PetscCall(MatSetType(b->B, MATSEQBAIJ));
2749c508b908SBarry Smith   MatSeqXAIJRestoreOptions_Private(b->B);
2750cb7b82ddSBarry Smith 
2751c508b908SBarry Smith   MatSeqXAIJGetOptions_Private(b->A);
2752ad79cf63SBarry Smith   PetscCall(MatDestroy(&b->A));
27539566063dSJacob Faibussowitsch   PetscCall(MatCreate(PETSC_COMM_SELF, &b->A));
27549566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(b->A, B->rmap->n, B->cmap->n, B->rmap->n, B->cmap->n));
27559566063dSJacob Faibussowitsch   PetscCall(MatSetType(b->A, MATSEQBAIJ));
2756c508b908SBarry Smith   MatSeqXAIJRestoreOptions_Private(b->A);
2757a23d5eceSKris Buschelman 
27589566063dSJacob Faibussowitsch   PetscCall(MatSeqBAIJSetPreallocation(b->A, bs, d_nz, d_nnz));
27599566063dSJacob Faibussowitsch   PetscCall(MatSeqBAIJSetPreallocation(b->B, bs, o_nz, o_nnz));
2760526dfc15SBarry Smith   B->preallocated  = PETSC_TRUE;
2761cb7b82ddSBarry Smith   B->was_assembled = PETSC_FALSE;
2762cb7b82ddSBarry Smith   B->assembled     = PETSC_FALSE;
27633ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2764a23d5eceSKris Buschelman }
2765a23d5eceSKris Buschelman 
27667087cfbeSBarry Smith extern PetscErrorCode MatDiagonalScaleLocal_MPIBAIJ(Mat, Vec);
27677087cfbeSBarry Smith extern PetscErrorCode MatSetHashTableFactor_MPIBAIJ(Mat, PetscReal);
27685bf65638SKris Buschelman 
2769d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode MatConvert_MPIBAIJ_MPIAdj(Mat B, MatType newtype, MatReuse reuse, Mat *adj)
2770d71ae5a4SJacob Faibussowitsch {
277182094794SBarry Smith   Mat_MPIBAIJ    *b = (Mat_MPIBAIJ *)B->data;
277282094794SBarry Smith   Mat_SeqBAIJ    *d = (Mat_SeqBAIJ *)b->A->data, *o = (Mat_SeqBAIJ *)b->B->data;
277382094794SBarry Smith   PetscInt        M = B->rmap->n / B->rmap->bs, i, *ii, *jj, cnt, j, k, rstart = B->rmap->rstart / B->rmap->bs;
277482094794SBarry Smith   const PetscInt *id = d->i, *jd = d->j, *io = o->i, *jo = o->j, *garray = b->garray;
277582094794SBarry Smith 
277682094794SBarry Smith   PetscFunctionBegin;
27779566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(M + 1, &ii));
277882094794SBarry Smith   ii[0] = 0;
277982094794SBarry Smith   for (i = 0; i < M; i++) {
278008401ef6SPierre Jolivet     PetscCheck((id[i + 1] - id[i]) >= 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Indices wrong %" PetscInt_FMT " %" PetscInt_FMT " %" PetscInt_FMT, i, id[i], id[i + 1]);
278108401ef6SPierre Jolivet     PetscCheck((io[i + 1] - io[i]) >= 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Indices wrong %" PetscInt_FMT " %" PetscInt_FMT " %" PetscInt_FMT, i, io[i], io[i + 1]);
278282094794SBarry Smith     ii[i + 1] = ii[i] + id[i + 1] - id[i] + io[i + 1] - io[i];
27835ee9ba1cSJed Brown     /* remove one from count of matrix has diagonal */
27845ee9ba1cSJed Brown     for (j = id[i]; j < id[i + 1]; j++) {
27859371c9d4SSatish Balay       if (jd[j] == i) {
27869371c9d4SSatish Balay         ii[i + 1]--;
27879371c9d4SSatish Balay         break;
27889371c9d4SSatish Balay       }
27895ee9ba1cSJed Brown     }
279082094794SBarry Smith   }
27919566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(ii[M], &jj));
279282094794SBarry Smith   cnt = 0;
279382094794SBarry Smith   for (i = 0; i < M; i++) {
279482094794SBarry Smith     for (j = io[i]; j < io[i + 1]; j++) {
279582094794SBarry Smith       if (garray[jo[j]] > rstart) break;
279682094794SBarry Smith       jj[cnt++] = garray[jo[j]];
279782094794SBarry Smith     }
279882094794SBarry Smith     for (k = id[i]; k < id[i + 1]; k++) {
2799ad540459SPierre Jolivet       if (jd[k] != i) jj[cnt++] = rstart + jd[k];
280082094794SBarry Smith     }
2801ad540459SPierre Jolivet     for (; j < io[i + 1]; j++) jj[cnt++] = garray[jo[j]];
280282094794SBarry Smith   }
28039566063dSJacob Faibussowitsch   PetscCall(MatCreateMPIAdj(PetscObjectComm((PetscObject)B), M, B->cmap->N / B->rmap->bs, ii, jj, NULL, adj));
28043ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
280582094794SBarry Smith }
280682094794SBarry Smith 
2807c6db04a5SJed Brown #include <../src/mat/impls/aij/mpi/mpiaij.h>
280862471d69SBarry Smith 
2809cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_SeqBAIJ_SeqAIJ(Mat, MatType, MatReuse, Mat *);
2810b2573a8aSBarry Smith 
2811d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode MatConvert_MPIBAIJ_MPIAIJ(Mat A, MatType newtype, MatReuse reuse, Mat *newmat)
2812d71ae5a4SJacob Faibussowitsch {
281362471d69SBarry Smith   Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data;
281485a69837SSatish Balay   Mat_MPIAIJ  *b;
28155f80ce2aSJacob Faibussowitsch   Mat          B;
281662471d69SBarry Smith 
281762471d69SBarry Smith   PetscFunctionBegin;
28185f80ce2aSJacob Faibussowitsch   PetscCheck(A->assembled, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Matrix must be assembled");
281962471d69SBarry Smith 
28200f6d62edSLisandro Dalcin   if (reuse == MAT_REUSE_MATRIX) {
28210f6d62edSLisandro Dalcin     B = *newmat;
28220f6d62edSLisandro Dalcin   } else {
28239566063dSJacob Faibussowitsch     PetscCall(MatCreate(PetscObjectComm((PetscObject)A), &B));
28249566063dSJacob Faibussowitsch     PetscCall(MatSetType(B, MATMPIAIJ));
28259566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(B, A->rmap->n, A->cmap->n, A->rmap->N, A->cmap->N));
28269566063dSJacob Faibussowitsch     PetscCall(MatSetBlockSizes(B, A->rmap->bs, A->cmap->bs));
28279566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJSetPreallocation(B, 0, NULL));
28289566063dSJacob Faibussowitsch     PetscCall(MatMPIAIJSetPreallocation(B, 0, NULL, 0, NULL));
28290f6d62edSLisandro Dalcin   }
283062471d69SBarry Smith   b = (Mat_MPIAIJ *)B->data;
283162471d69SBarry Smith 
28320f6d62edSLisandro Dalcin   if (reuse == MAT_REUSE_MATRIX) {
28339566063dSJacob Faibussowitsch     PetscCall(MatConvert_SeqBAIJ_SeqAIJ(a->A, MATSEQAIJ, MAT_REUSE_MATRIX, &b->A));
28349566063dSJacob Faibussowitsch     PetscCall(MatConvert_SeqBAIJ_SeqAIJ(a->B, MATSEQAIJ, MAT_REUSE_MATRIX, &b->B));
28350f6d62edSLisandro Dalcin   } else {
28367c612885SStefano Zampini     PetscInt   *garray = a->garray;
28377c612885SStefano Zampini     Mat_SeqAIJ *bB;
28387c612885SStefano Zampini     PetscInt    bs, nnz;
28399566063dSJacob Faibussowitsch     PetscCall(MatDestroy(&b->A));
28409566063dSJacob Faibussowitsch     PetscCall(MatDestroy(&b->B));
28417c612885SStefano Zampini     /* just clear out the data structure */
2842eb14dd14SAlex Lindsay     PetscCall(MatDisAssemble_MPIAIJ(B, PETSC_FALSE));
28439566063dSJacob Faibussowitsch     PetscCall(MatConvert_SeqBAIJ_SeqAIJ(a->A, MATSEQAIJ, MAT_INITIAL_MATRIX, &b->A));
28449566063dSJacob Faibussowitsch     PetscCall(MatConvert_SeqBAIJ_SeqAIJ(a->B, MATSEQAIJ, MAT_INITIAL_MATRIX, &b->B));
28457c612885SStefano Zampini 
28467c612885SStefano Zampini     /* Global numbering for b->B columns */
28477c612885SStefano Zampini     bB  = (Mat_SeqAIJ *)b->B->data;
28487c612885SStefano Zampini     bs  = A->rmap->bs;
28497c612885SStefano Zampini     nnz = bB->i[A->rmap->n];
28507c612885SStefano Zampini     for (PetscInt k = 0; k < nnz; k++) {
28517c612885SStefano Zampini       PetscInt bj = bB->j[k] / bs;
28527c612885SStefano Zampini       PetscInt br = bB->j[k] % bs;
28537c612885SStefano Zampini       bB->j[k]    = garray[bj] * bs + br;
28547c612885SStefano Zampini     }
28550f6d62edSLisandro Dalcin   }
28569566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY));
28579566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY));
28580f6d62edSLisandro Dalcin 
2859511c6705SHong Zhang   if (reuse == MAT_INPLACE_MATRIX) {
28609566063dSJacob Faibussowitsch     PetscCall(MatHeaderReplace(A, &B));
286162471d69SBarry Smith   } else {
286262471d69SBarry Smith     *newmat = B;
286362471d69SBarry Smith   }
28643ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
286562471d69SBarry Smith }
286662471d69SBarry Smith 
28670bad9183SKris Buschelman /*MC
2868fafad747SKris Buschelman    MATMPIBAIJ - MATMPIBAIJ = "mpibaij" - A matrix type to be used for distributed block sparse matrices.
28690bad9183SKris Buschelman 
28700bad9183SKris Buschelman    Options Database Keys:
287111a5261eSBarry Smith + -mat_type mpibaij - sets the matrix type to `MATMPIBAIJ` during a call to `MatSetFromOptions()`
28728c07d4e3SBarry Smith . -mat_block_size <bs> - set the blocksize used to store the matrix
28736679dcc1SBarry Smith . -mat_baij_mult_version version - indicate the version of the matrix-vector product to use  (0 often indicates using BLAS)
287467b8a455SSatish Balay - -mat_use_hash_table <fact> - set hash table factor
28750bad9183SKris Buschelman 
28760bad9183SKris Buschelman    Level: beginner
28770cd7f59aSBarry Smith 
287811a5261eSBarry Smith    Note:
28795e0ad47dSPierre Jolivet     `MatSetOption(A, MAT_STRUCTURE_ONLY, PETSC_TRUE)` may be called for this matrix type. In this no
288011a5261eSBarry Smith     space is allocated for the nonzero entries and any entries passed with `MatSetValues()` are ignored
28810bad9183SKris Buschelman 
28825e0ad47dSPierre Jolivet .seealso: `Mat`, `MATBAIJ`, `MATSEQBAIJ`, `MatCreateBAIJ`
28830bad9183SKris Buschelman M*/
28840bad9183SKris Buschelman 
2885cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIBAIJ_MPIBSTRM(Mat, MatType, MatReuse, Mat *);
2886c0cdd4a1SDahai Guo 
2887d71ae5a4SJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatCreate_MPIBAIJ(Mat B)
2888d71ae5a4SJacob Faibussowitsch {
2889273d9f13SBarry Smith   Mat_MPIBAIJ *b;
289094ae4db5SBarry Smith   PetscBool    flg = PETSC_FALSE;
2891273d9f13SBarry Smith 
2892273d9f13SBarry Smith   PetscFunctionBegin;
28934dfa11a4SJacob Faibussowitsch   PetscCall(PetscNew(&b));
289482502324SSatish Balay   B->data      = (void *)b;
2895aea10558SJacob Faibussowitsch   B->ops[0]    = MatOps_Values;
2896273d9f13SBarry Smith   B->assembled = PETSC_FALSE;
2897273d9f13SBarry Smith 
2898273d9f13SBarry Smith   B->insertmode = NOT_SET_VALUES;
28999566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)B), &b->rank));
29009566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)B), &b->size));
2901273d9f13SBarry Smith 
2902273d9f13SBarry Smith   /* build local table of row and column ownerships */
29039566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(b->size + 1, &b->rangebs));
2904273d9f13SBarry Smith 
2905273d9f13SBarry Smith   /* build cache for off array entries formed */
29069566063dSJacob Faibussowitsch   PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)B), 1, &B->stash));
290726fbe8dcSKarl Rupp 
2908273d9f13SBarry Smith   b->donotstash  = PETSC_FALSE;
29090298fd71SBarry Smith   b->colmap      = NULL;
29100298fd71SBarry Smith   b->garray      = NULL;
2911273d9f13SBarry Smith   b->roworiented = PETSC_TRUE;
2912273d9f13SBarry Smith 
2913273d9f13SBarry Smith   /* stuff used in block assembly */
2914f4259b30SLisandro Dalcin   b->barray = NULL;
2915273d9f13SBarry Smith 
2916273d9f13SBarry Smith   /* stuff used for matrix vector multiply */
2917f4259b30SLisandro Dalcin   b->lvec  = NULL;
2918f4259b30SLisandro Dalcin   b->Mvctx = NULL;
2919273d9f13SBarry Smith 
2920273d9f13SBarry Smith   /* stuff for MatGetRow() */
2921f4259b30SLisandro Dalcin   b->rowindices   = NULL;
2922f4259b30SLisandro Dalcin   b->rowvalues    = NULL;
2923273d9f13SBarry Smith   b->getrowactive = PETSC_FALSE;
2924273d9f13SBarry Smith 
2925273d9f13SBarry Smith   /* hash table stuff */
2926f4259b30SLisandro Dalcin   b->ht           = NULL;
2927f4259b30SLisandro Dalcin   b->hd           = NULL;
2928273d9f13SBarry Smith   b->ht_size      = 0;
2929273d9f13SBarry Smith   b->ht_flag      = PETSC_FALSE;
2930273d9f13SBarry Smith   b->ht_fact      = 0;
2931273d9f13SBarry Smith   b->ht_total_ct  = 0;
2932273d9f13SBarry Smith   b->ht_insert_ct = 0;
2933273d9f13SBarry Smith 
29347dae84e0SHong Zhang   /* stuff for MatCreateSubMatrices_MPIBAIJ_local() */
29357a868f3eSHong Zhang   b->ijonly = PETSC_FALSE;
29367a868f3eSHong Zhang 
29379566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpibaij_mpiadj_C", MatConvert_MPIBAIJ_MPIAdj));
29389566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpibaij_mpiaij_C", MatConvert_MPIBAIJ_MPIAIJ));
29399566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpibaij_mpisbaij_C", MatConvert_MPIBAIJ_MPISBAIJ));
29407ea3e4caSstefano_zampini #if defined(PETSC_HAVE_HYPRE)
29419566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpibaij_hypre_C", MatConvert_AIJ_HYPRE));
29427ea3e4caSstefano_zampini #endif
29439566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatStoreValues_C", MatStoreValues_MPIBAIJ));
29449566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatRetrieveValues_C", MatRetrieveValues_MPIBAIJ));
29459566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMPIBAIJSetPreallocation_C", MatMPIBAIJSetPreallocation_MPIBAIJ));
29469566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMPIBAIJSetPreallocationCSR_C", MatMPIBAIJSetPreallocationCSR_MPIBAIJ));
29479566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatDiagonalScaleLocal_C", MatDiagonalScaleLocal_MPIBAIJ));
29489566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatSetHashTableFactor_C", MatSetHashTableFactor_MPIBAIJ));
29499566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpibaij_is_C", MatConvert_XAIJ_IS));
29509566063dSJacob Faibussowitsch   PetscCall(PetscObjectChangeTypeName((PetscObject)B, MATMPIBAIJ));
295194ae4db5SBarry Smith 
2952d0609cedSBarry Smith   PetscOptionsBegin(PetscObjectComm((PetscObject)B), NULL, "Options for loading MPIBAIJ matrix 1", "Mat");
29539566063dSJacob Faibussowitsch   PetscCall(PetscOptionsName("-mat_use_hash_table", "Use hash table to save time in constructing matrix", "MatSetOption", &flg));
295494ae4db5SBarry Smith   if (flg) {
295594ae4db5SBarry Smith     PetscReal fact = 1.39;
29569566063dSJacob Faibussowitsch     PetscCall(MatSetOption(B, MAT_USE_HASH_TABLE, PETSC_TRUE));
29579566063dSJacob Faibussowitsch     PetscCall(PetscOptionsReal("-mat_use_hash_table", "Use hash table factor", "MatMPIBAIJSetHashTableFactor", fact, &fact, NULL));
295894ae4db5SBarry Smith     if (fact <= 1.0) fact = 1.39;
29599566063dSJacob Faibussowitsch     PetscCall(MatMPIBAIJSetHashTableFactor(B, fact));
29609566063dSJacob Faibussowitsch     PetscCall(PetscInfo(B, "Hash table Factor used %5.2g\n", (double)fact));
296194ae4db5SBarry Smith   }
2962d0609cedSBarry Smith   PetscOptionsEnd();
29633ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2964273d9f13SBarry Smith }
2965273d9f13SBarry Smith 
29662920cce0SJacob Faibussowitsch // PetscClangLinter pragma disable: -fdoc-section-header-unknown
2967209238afSKris Buschelman /*MC
2968002d173eSKris Buschelman    MATBAIJ - MATBAIJ = "baij" - A matrix type to be used for block sparse matrices.
2969209238afSKris Buschelman 
297011a5261eSBarry Smith    This matrix type is identical to `MATSEQBAIJ` when constructed with a single process communicator,
297111a5261eSBarry Smith    and `MATMPIBAIJ` otherwise.
2972209238afSKris Buschelman 
2973209238afSKris Buschelman    Options Database Keys:
297411a5261eSBarry Smith . -mat_type baij - sets the matrix type to `MATBAIJ` during a call to `MatSetFromOptions()`
2975209238afSKris Buschelman 
2976209238afSKris Buschelman   Level: beginner
2977209238afSKris Buschelman 
297867be906fSBarry Smith .seealso: `Mat`, `MatCreateBAIJ()`, `MATSEQBAIJ`, `MATMPIBAIJ`, `MatMPIBAIJSetPreallocation()`, `MatMPIBAIJSetPreallocationCSR()`
2979209238afSKris Buschelman M*/
2980209238afSKris Buschelman 
29815d83a8b1SBarry Smith /*@
298211a5261eSBarry Smith   MatMPIBAIJSetPreallocation - Allocates memory for a sparse parallel matrix in `MATMPIBAIJ` format
298367be906fSBarry Smith   (block compressed row).
2984273d9f13SBarry Smith 
2985c3339decSBarry Smith   Collective
2986273d9f13SBarry Smith 
2987273d9f13SBarry Smith   Input Parameters:
29881c4f3114SJed Brown + B     - the matrix
298911a5261eSBarry Smith . bs    - size of block, the blocks are ALWAYS square. One can use `MatSetBlockSizes()` to set a different row and column blocksize but the row
299067be906fSBarry Smith           blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with `MatCreateVecs()`
2991273d9f13SBarry Smith . d_nz  - number of block nonzeros per block row in diagonal portion of local
2992273d9f13SBarry Smith            submatrix  (same for all local rows)
2993273d9f13SBarry Smith . d_nnz - array containing the number of block nonzeros in the various block rows
2994273d9f13SBarry Smith            of the in diagonal portion of the local (possibly different for each block
299567be906fSBarry Smith            row) or `NULL`.  If you plan to factor the matrix you must leave room for the diagonal entry and
299695742e49SBarry Smith            set it even if it is zero.
2997273d9f13SBarry Smith . o_nz  - number of block nonzeros per block row in the off-diagonal portion of local
2998273d9f13SBarry Smith            submatrix (same for all local rows).
2999273d9f13SBarry Smith - o_nnz - array containing the number of nonzeros in the various block rows of the
3000273d9f13SBarry Smith            off-diagonal portion of the local submatrix (possibly different for
300167be906fSBarry Smith            each block row) or `NULL`.
3002273d9f13SBarry Smith 
300349a6f317SBarry Smith    If the *_nnz parameter is given then the *_nz parameter is ignored
3004273d9f13SBarry Smith 
3005273d9f13SBarry Smith   Options Database Keys:
30068c07d4e3SBarry Smith + -mat_block_size            - size of the blocks to use
300767b8a455SSatish Balay - -mat_use_hash_table <fact> - set hash table factor
3008273d9f13SBarry Smith 
300967be906fSBarry Smith   Level: intermediate
301067be906fSBarry Smith 
3011273d9f13SBarry Smith   Notes:
301267be906fSBarry Smith   For good matrix assembly performance
301367be906fSBarry Smith   the user should preallocate the matrix storage by setting the parameters
301467be906fSBarry Smith   `d_nz` (or `d_nnz`) and `o_nz` (or `o_nnz`).  By setting these parameters accurately,
301567be906fSBarry Smith   performance can be increased by more than a factor of 50.
301667be906fSBarry Smith 
301711a5261eSBarry Smith   If `PETSC_DECIDE` or  `PETSC_DETERMINE` is used for a particular argument on one processor
3018273d9f13SBarry Smith   than it must be used on all processors that share the object for that argument.
3019273d9f13SBarry Smith 
3020273d9f13SBarry Smith   Storage Information:
3021273d9f13SBarry Smith   For a square global matrix we define each processor's diagonal portion
3022273d9f13SBarry Smith   to be its local rows and the corresponding columns (a square submatrix);
3023273d9f13SBarry Smith   each processor's off-diagonal portion encompasses the remainder of the
3024273d9f13SBarry Smith   local matrix (a rectangular submatrix).
3025273d9f13SBarry Smith 
3026273d9f13SBarry Smith   The user can specify preallocated storage for the diagonal part of
302767be906fSBarry Smith   the local submatrix with either `d_nz` or `d_nnz` (not both).  Set
302867be906fSBarry Smith   `d_nz` = `PETSC_DEFAULT` and `d_nnz` = `NULL` for PETSc to control dynamic
3029273d9f13SBarry Smith   memory allocation.  Likewise, specify preallocated storage for the
303067be906fSBarry Smith   off-diagonal part of the local submatrix with `o_nz` or `o_nnz` (not both).
3031273d9f13SBarry Smith 
3032273d9f13SBarry Smith   Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
3033273d9f13SBarry Smith   the figure below we depict these three local rows and all columns (0-11).
3034273d9f13SBarry Smith 
3035273d9f13SBarry Smith .vb
3036273d9f13SBarry Smith            0 1 2 3 4 5 6 7 8 9 10 11
3037a4b1a0f6SJed Brown           --------------------------
3038273d9f13SBarry Smith    row 3  |o o o d d d o o o o  o  o
3039273d9f13SBarry Smith    row 4  |o o o d d d o o o o  o  o
3040273d9f13SBarry Smith    row 5  |o o o d d d o o o o  o  o
3041a4b1a0f6SJed Brown           --------------------------
3042273d9f13SBarry Smith .ve
3043273d9f13SBarry Smith 
3044273d9f13SBarry Smith   Thus, any entries in the d locations are stored in the d (diagonal)
3045273d9f13SBarry Smith   submatrix, and any entries in the o locations are stored in the
3046273d9f13SBarry Smith   o (off-diagonal) submatrix.  Note that the d and the o submatrices are
304711a5261eSBarry Smith   stored simply in the `MATSEQBAIJ` format for compressed row storage.
3048273d9f13SBarry Smith 
304967be906fSBarry Smith   Now `d_nz` should indicate the number of block nonzeros per row in the d matrix,
305067be906fSBarry Smith   and `o_nz` should indicate the number of block nonzeros per row in the o matrix.
3051273d9f13SBarry Smith   In general, for PDE problems in which most nonzeros are near the diagonal,
305220f4b53cSBarry Smith   one expects `d_nz` >> `o_nz`.
3053273d9f13SBarry Smith 
305411a5261eSBarry Smith   You can call `MatGetInfo()` to get information on how effective the preallocation was;
3055aa95bbe8SBarry Smith   for example the fields mallocs,nz_allocated,nz_used,nz_unneeded;
305667be906fSBarry Smith   You can also run with the option `-info` and look for messages with the string
3057aa95bbe8SBarry Smith   malloc in them to see if additional memory allocation was needed.
3058aa95bbe8SBarry Smith 
305967be906fSBarry Smith .seealso: `Mat`, `MATMPIBAIJ`, `MatCreate()`, `MatCreateSeqBAIJ()`, `MatSetValues()`, `MatCreateBAIJ()`, `MatMPIBAIJSetPreallocationCSR()`, `PetscSplitOwnership()`
3060273d9f13SBarry Smith @*/
3061d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIBAIJSetPreallocation(Mat B, PetscInt bs, PetscInt d_nz, const PetscInt d_nnz[], PetscInt o_nz, const PetscInt o_nnz[])
3062d71ae5a4SJacob Faibussowitsch {
3063273d9f13SBarry Smith   PetscFunctionBegin;
30646ba663aaSJed Brown   PetscValidHeaderSpecific(B, MAT_CLASSID, 1);
30656ba663aaSJed Brown   PetscValidType(B, 1);
30666ba663aaSJed Brown   PetscValidLogicalCollectiveInt(B, bs, 2);
3067cac4c232SBarry Smith   PetscTryMethod(B, "MatMPIBAIJSetPreallocation_C", (Mat, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[]), (B, bs, d_nz, d_nnz, o_nz, o_nnz));
30683ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3069273d9f13SBarry Smith }
3070273d9f13SBarry Smith 
30712920cce0SJacob Faibussowitsch // PetscClangLinter pragma disable: -fdoc-section-header-unknown
30725d83a8b1SBarry Smith /*@
307311a5261eSBarry Smith   MatCreateBAIJ - Creates a sparse parallel matrix in `MATBAIJ` format
307467be906fSBarry Smith   (block compressed row).
307579bdfe76SSatish Balay 
3076d083f849SBarry Smith   Collective
3077db81eaa0SLois Curfman McInnes 
307879bdfe76SSatish Balay   Input Parameters:
3079db81eaa0SLois Curfman McInnes + comm  - MPI communicator
308011a5261eSBarry Smith . bs    - size of block, the blocks are ALWAYS square. One can use `MatSetBlockSizes()` to set a different row and column blocksize but the row
308111a5261eSBarry Smith           blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with `MatCreateVecs()`
308211a5261eSBarry Smith . m     - number of local rows (or `PETSC_DECIDE` to have calculated if M is given)
308392e8d321SLois Curfman McInnes           This value should be the same as the local size used in creating the
308492e8d321SLois Curfman McInnes           y vector for the matrix-vector product y = Ax.
308511a5261eSBarry Smith . n     - number of local columns (or `PETSC_DECIDE` to have calculated if N is given)
308692e8d321SLois Curfman McInnes           This value should be the same as the local size used in creating the
308792e8d321SLois Curfman McInnes           x vector for the matrix-vector product y = Ax.
308811a5261eSBarry Smith . M     - number of global rows (or `PETSC_DETERMINE` to have calculated if m is given)
308911a5261eSBarry Smith . N     - number of global columns (or `PETSC_DETERMINE` to have calculated if n is given)
309047a75d0bSBarry Smith . d_nz  - number of nonzero blocks per block row in diagonal portion of local
309179bdfe76SSatish Balay           submatrix  (same for all local rows)
309247a75d0bSBarry Smith . d_nnz - array containing the number of nonzero blocks in the various block rows
309392e8d321SLois Curfman McInnes           of the in diagonal portion of the local (possibly different for each block
30940298fd71SBarry Smith           row) or NULL.  If you plan to factor the matrix you must leave room for the diagonal entry
309595742e49SBarry Smith           and set it even if it is zero.
309647a75d0bSBarry Smith . o_nz  - number of nonzero blocks per block row in the off-diagonal portion of local
309779bdfe76SSatish Balay           submatrix (same for all local rows).
309847a75d0bSBarry Smith - o_nnz - array containing the number of nonzero blocks in the various block rows of the
309992e8d321SLois Curfman McInnes           off-diagonal portion of the local submatrix (possibly different for
31000298fd71SBarry Smith           each block row) or NULL.
310179bdfe76SSatish Balay 
310279bdfe76SSatish Balay   Output Parameter:
310379bdfe76SSatish Balay . A - the matrix
310479bdfe76SSatish Balay 
3105db81eaa0SLois Curfman McInnes   Options Database Keys:
31068c07d4e3SBarry Smith + -mat_block_size            - size of the blocks to use
310767b8a455SSatish Balay - -mat_use_hash_table <fact> - set hash table factor
31083ffaccefSLois Curfman McInnes 
310967be906fSBarry Smith   Level: intermediate
311067be906fSBarry Smith 
311167be906fSBarry Smith   Notes:
311277433607SBarry Smith   It is recommended that one use `MatCreateFromOptions()` or the `MatCreate()`, `MatSetType()` and/or `MatSetFromOptions()`,
311377433607SBarry Smith   MatXXXXSetPreallocation() paradigm instead of this routine directly.
311477433607SBarry Smith   [MatXXXXSetPreallocation() is, for example, `MatSeqBAIJSetPreallocation()`]
311577433607SBarry Smith 
311667be906fSBarry Smith   For good matrix assembly performance
311767be906fSBarry Smith   the user should preallocate the matrix storage by setting the parameters
311867be906fSBarry Smith   `d_nz` (or `d_nnz`) and `o_nz` (or `o_nnz`).  By setting these parameters accurately,
311967be906fSBarry Smith   performance can be increased by more than a factor of 50.
312067be906fSBarry Smith 
312149a6f317SBarry Smith   If the *_nnz parameter is given then the *_nz parameter is ignored
312249a6f317SBarry Smith 
312347a75d0bSBarry Smith   A nonzero block is any block that as 1 or more nonzeros in it
312447a75d0bSBarry Smith 
312579bdfe76SSatish Balay   The user MUST specify either the local or global matrix dimensions
312679bdfe76SSatish Balay   (possibly both).
312779bdfe76SSatish Balay 
312811a5261eSBarry Smith   If `PETSC_DECIDE` or  `PETSC_DETERMINE` is used for a particular argument on one processor
3129be79a94dSBarry Smith   than it must be used on all processors that share the object for that argument.
3130be79a94dSBarry Smith 
3131727bdf9bSBarry Smith   If `m` and `n` are not `PETSC_DECIDE`, then the values determine the `PetscLayout` of the matrix and the ranges returned by
3132727bdf9bSBarry Smith   `MatGetOwnershipRange()`,  `MatGetOwnershipRanges()`, `MatGetOwnershipRangeColumn()`, and `MatGetOwnershipRangesColumn()`.
3133727bdf9bSBarry Smith 
313479bdfe76SSatish Balay   Storage Information:
313579bdfe76SSatish Balay   For a square global matrix we define each processor's diagonal portion
313679bdfe76SSatish Balay   to be its local rows and the corresponding columns (a square submatrix);
313779bdfe76SSatish Balay   each processor's off-diagonal portion encompasses the remainder of the
313879bdfe76SSatish Balay   local matrix (a rectangular submatrix).
313979bdfe76SSatish Balay 
314079bdfe76SSatish Balay   The user can specify preallocated storage for the diagonal part of
314179bdfe76SSatish Balay   the local submatrix with either d_nz or d_nnz (not both).  Set
314267be906fSBarry Smith   `d_nz` = `PETSC_DEFAULT` and `d_nnz` = `NULL` for PETSc to control dynamic
314379bdfe76SSatish Balay   memory allocation.  Likewise, specify preallocated storage for the
314467be906fSBarry Smith   off-diagonal part of the local submatrix with `o_nz` or `o_nnz` (not both).
314579bdfe76SSatish Balay 
314679bdfe76SSatish Balay   Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
314779bdfe76SSatish Balay   the figure below we depict these three local rows and all columns (0-11).
314879bdfe76SSatish Balay 
3149db81eaa0SLois Curfman McInnes .vb
3150db81eaa0SLois Curfman McInnes            0 1 2 3 4 5 6 7 8 9 10 11
3151a4b1a0f6SJed Brown           --------------------------
3152db81eaa0SLois Curfman McInnes    row 3  |o o o d d d o o o o  o  o
3153db81eaa0SLois Curfman McInnes    row 4  |o o o d d d o o o o  o  o
3154db81eaa0SLois Curfman McInnes    row 5  |o o o d d d o o o o  o  o
3155a4b1a0f6SJed Brown           --------------------------
3156db81eaa0SLois Curfman McInnes .ve
315779bdfe76SSatish Balay 
315879bdfe76SSatish Balay   Thus, any entries in the d locations are stored in the d (diagonal)
315979bdfe76SSatish Balay   submatrix, and any entries in the o locations are stored in the
316079bdfe76SSatish Balay   o (off-diagonal) submatrix.  Note that the d and the o submatrices are
316111a5261eSBarry Smith   stored simply in the `MATSEQBAIJ` format for compressed row storage.
316279bdfe76SSatish Balay 
316367be906fSBarry Smith   Now `d_nz` should indicate the number of block nonzeros per row in the d matrix,
316467be906fSBarry Smith   and `o_nz` should indicate the number of block nonzeros per row in the o matrix.
316579bdfe76SSatish Balay   In general, for PDE problems in which most nonzeros are near the diagonal,
316620f4b53cSBarry Smith   one expects `d_nz` >> `o_nz`.
316779bdfe76SSatish Balay 
3168727bdf9bSBarry Smith .seealso: `Mat`, `MatCreate()`, `MatCreateSeqBAIJ()`, `MatSetValues()`, `MatMPIBAIJSetPreallocation()`, `MatMPIBAIJSetPreallocationCSR()`,
3169727bdf9bSBarry Smith           `MatGetOwnershipRange()`,  `MatGetOwnershipRanges()`, `MatGetOwnershipRangeColumn()`, `MatGetOwnershipRangesColumn()`, `PetscLayout`
317079bdfe76SSatish Balay @*/
3171d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateBAIJ(MPI_Comm comm, PetscInt bs, PetscInt m, PetscInt n, PetscInt M, PetscInt N, PetscInt d_nz, const PetscInt d_nnz[], PetscInt o_nz, const PetscInt o_nnz[], Mat *A)
3172d71ae5a4SJacob Faibussowitsch {
3173b24ad042SBarry Smith   PetscMPIInt size;
317479bdfe76SSatish Balay 
3175d64ed03dSBarry Smith   PetscFunctionBegin;
31769566063dSJacob Faibussowitsch   PetscCall(MatCreate(comm, A));
31779566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(*A, m, n, M, N));
31789566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
3179273d9f13SBarry Smith   if (size > 1) {
31809566063dSJacob Faibussowitsch     PetscCall(MatSetType(*A, MATMPIBAIJ));
31819566063dSJacob Faibussowitsch     PetscCall(MatMPIBAIJSetPreallocation(*A, bs, d_nz, d_nnz, o_nz, o_nnz));
3182273d9f13SBarry Smith   } else {
31839566063dSJacob Faibussowitsch     PetscCall(MatSetType(*A, MATSEQBAIJ));
31849566063dSJacob Faibussowitsch     PetscCall(MatSeqBAIJSetPreallocation(*A, bs, d_nz, d_nnz));
31853914022bSBarry Smith   }
31863ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
318779bdfe76SSatish Balay }
3188026e39d0SSatish Balay 
3189d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatDuplicate_MPIBAIJ(Mat matin, MatDuplicateOption cpvalues, Mat *newmat)
3190d71ae5a4SJacob Faibussowitsch {
31910ac07820SSatish Balay   Mat          mat;
31920ac07820SSatish Balay   Mat_MPIBAIJ *a, *oldmat = (Mat_MPIBAIJ *)matin->data;
3193b24ad042SBarry Smith   PetscInt     len = 0;
31940ac07820SSatish Balay 
3195d64ed03dSBarry Smith   PetscFunctionBegin;
3196f4259b30SLisandro Dalcin   *newmat = NULL;
31979566063dSJacob Faibussowitsch   PetscCall(MatCreate(PetscObjectComm((PetscObject)matin), &mat));
31989566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(mat, matin->rmap->n, matin->cmap->n, matin->rmap->N, matin->cmap->N));
31999566063dSJacob Faibussowitsch   PetscCall(MatSetType(mat, ((PetscObject)matin)->type_name));
32007fff6886SHong Zhang 
3201420957c1SBarry Smith   PetscCall(PetscLayoutReference(matin->rmap, &mat->rmap));
3202420957c1SBarry Smith   PetscCall(PetscLayoutReference(matin->cmap, &mat->cmap));
3203420957c1SBarry Smith   if (matin->hash_active) {
3204420957c1SBarry Smith     PetscCall(MatSetUp(mat));
3205420957c1SBarry Smith   } else {
3206d5f3da31SBarry Smith     mat->factortype   = matin->factortype;
3207273d9f13SBarry Smith     mat->preallocated = PETSC_TRUE;
32080ac07820SSatish Balay     mat->assembled    = PETSC_TRUE;
32097fff6886SHong Zhang     mat->insertmode   = NOT_SET_VALUES;
32107fff6886SHong Zhang 
3211273d9f13SBarry Smith     a             = (Mat_MPIBAIJ *)mat->data;
3212d0f46423SBarry Smith     mat->rmap->bs = matin->rmap->bs;
32130ac07820SSatish Balay     a->bs2        = oldmat->bs2;
32140ac07820SSatish Balay     a->mbs        = oldmat->mbs;
32150ac07820SSatish Balay     a->nbs        = oldmat->nbs;
32160ac07820SSatish Balay     a->Mbs        = oldmat->Mbs;
32170ac07820SSatish Balay     a->Nbs        = oldmat->Nbs;
32180ac07820SSatish Balay 
32190ac07820SSatish Balay     a->size         = oldmat->size;
32200ac07820SSatish Balay     a->rank         = oldmat->rank;
3221aef5e8e0SSatish Balay     a->donotstash   = oldmat->donotstash;
3222aef5e8e0SSatish Balay     a->roworiented  = oldmat->roworiented;
3223f4259b30SLisandro Dalcin     a->rowindices   = NULL;
3224f4259b30SLisandro Dalcin     a->rowvalues    = NULL;
32250ac07820SSatish Balay     a->getrowactive = PETSC_FALSE;
3226f4259b30SLisandro Dalcin     a->barray       = NULL;
3227899cda47SBarry Smith     a->rstartbs     = oldmat->rstartbs;
3228899cda47SBarry Smith     a->rendbs       = oldmat->rendbs;
3229899cda47SBarry Smith     a->cstartbs     = oldmat->cstartbs;
3230899cda47SBarry Smith     a->cendbs       = oldmat->cendbs;
32310ac07820SSatish Balay 
3232133cdb44SSatish Balay     /* hash table stuff */
3233f4259b30SLisandro Dalcin     a->ht           = NULL;
3234f4259b30SLisandro Dalcin     a->hd           = NULL;
3235133cdb44SSatish Balay     a->ht_size      = 0;
3236133cdb44SSatish Balay     a->ht_flag      = oldmat->ht_flag;
323725fdafccSSatish Balay     a->ht_fact      = oldmat->ht_fact;
3238133cdb44SSatish Balay     a->ht_total_ct  = 0;
3239133cdb44SSatish Balay     a->ht_insert_ct = 0;
3240133cdb44SSatish Balay 
32419566063dSJacob Faibussowitsch     PetscCall(PetscArraycpy(a->rangebs, oldmat->rangebs, a->size + 1));
32420ac07820SSatish Balay     if (oldmat->colmap) {
3243aa482453SBarry Smith #if defined(PETSC_USE_CTABLE)
3244eec179cfSJacob Faibussowitsch       PetscCall(PetscHMapIDuplicate(oldmat->colmap, &a->colmap));
324548e59246SSatish Balay #else
32469566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(a->Nbs, &a->colmap));
32479566063dSJacob Faibussowitsch       PetscCall(PetscArraycpy(a->colmap, oldmat->colmap, a->Nbs));
324848e59246SSatish Balay #endif
3249f4259b30SLisandro Dalcin     } else a->colmap = NULL;
32504beb1cfeSHong Zhang 
3251f4f49eeaSPierre Jolivet     if (oldmat->garray && (len = ((Mat_SeqBAIJ *)oldmat->B->data)->nbs)) {
32529566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(len, &a->garray));
32539566063dSJacob Faibussowitsch       PetscCall(PetscArraycpy(a->garray, oldmat->garray, len));
3254f4259b30SLisandro Dalcin     } else a->garray = NULL;
32550ac07820SSatish Balay 
32569566063dSJacob Faibussowitsch     PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)matin), matin->rmap->bs, &mat->bstash));
32579566063dSJacob Faibussowitsch     PetscCall(VecDuplicate(oldmat->lvec, &a->lvec));
32589566063dSJacob Faibussowitsch     PetscCall(VecScatterCopy(oldmat->Mvctx, &a->Mvctx));
32597fff6886SHong Zhang 
32609566063dSJacob Faibussowitsch     PetscCall(MatDuplicate(oldmat->A, cpvalues, &a->A));
32619566063dSJacob Faibussowitsch     PetscCall(MatDuplicate(oldmat->B, cpvalues, &a->B));
3262420957c1SBarry Smith   }
32639566063dSJacob Faibussowitsch   PetscCall(PetscFunctionListDuplicate(((PetscObject)matin)->qlist, &((PetscObject)mat)->qlist));
32640ac07820SSatish Balay   *newmat = mat;
32653ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
32660ac07820SSatish Balay }
326757b952d6SSatish Balay 
3268618cc2edSLisandro Dalcin /* Used for both MPIBAIJ and MPISBAIJ matrices */
3269d71ae5a4SJacob Faibussowitsch PetscErrorCode MatLoad_MPIBAIJ_Binary(Mat mat, PetscViewer viewer)
3270d71ae5a4SJacob Faibussowitsch {
3271b51a4376SLisandro Dalcin   PetscInt     header[4], M, N, nz, bs, m, n, mbs, nbs, rows, cols, sum, i, j, k;
3272b51a4376SLisandro Dalcin   PetscInt    *rowidxs, *colidxs, rs, cs, ce;
3273b51a4376SLisandro Dalcin   PetscScalar *matvals;
3274b51a4376SLisandro Dalcin 
3275b51a4376SLisandro Dalcin   PetscFunctionBegin;
32769566063dSJacob Faibussowitsch   PetscCall(PetscViewerSetUp(viewer));
3277b51a4376SLisandro Dalcin 
3278b51a4376SLisandro Dalcin   /* read in matrix header */
32799566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryRead(viewer, header, 4, NULL, PETSC_INT));
32805f80ce2aSJacob Faibussowitsch   PetscCheck(header[0] == MAT_FILE_CLASSID, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Not a matrix object in file");
32819371c9d4SSatish Balay   M  = header[1];
32829371c9d4SSatish Balay   N  = header[2];
32839371c9d4SSatish Balay   nz = header[3];
32845f80ce2aSJacob Faibussowitsch   PetscCheck(M >= 0, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Matrix row size (%" PetscInt_FMT ") in file is negative", M);
32855f80ce2aSJacob Faibussowitsch   PetscCheck(N >= 0, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Matrix column size (%" PetscInt_FMT ") in file is negative", N);
32865f80ce2aSJacob Faibussowitsch   PetscCheck(nz >= 0, PETSC_COMM_SELF, PETSC_ERR_FILE_UNEXPECTED, "Matrix stored in special format on disk, cannot load as MPIBAIJ");
3287b51a4376SLisandro Dalcin 
3288b51a4376SLisandro Dalcin   /* set block sizes from the viewer's .info file */
32899566063dSJacob Faibussowitsch   PetscCall(MatLoad_Binary_BlockSizes(mat, viewer));
3290618cc2edSLisandro Dalcin   /* set local sizes if not set already */
3291618cc2edSLisandro Dalcin   if (mat->rmap->n < 0 && M == N) mat->rmap->n = mat->cmap->n;
3292618cc2edSLisandro Dalcin   if (mat->cmap->n < 0 && M == N) mat->cmap->n = mat->rmap->n;
3293b51a4376SLisandro Dalcin   /* set global sizes if not set already */
3294b51a4376SLisandro Dalcin   if (mat->rmap->N < 0) mat->rmap->N = M;
3295b51a4376SLisandro Dalcin   if (mat->cmap->N < 0) mat->cmap->N = N;
32969566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(mat->rmap));
32979566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(mat->cmap));
3298b51a4376SLisandro Dalcin 
3299b51a4376SLisandro Dalcin   /* check if the matrix sizes are correct */
33009566063dSJacob Faibussowitsch   PetscCall(MatGetSize(mat, &rows, &cols));
33015f80ce2aSJacob Faibussowitsch   PetscCheck(M == rows && N == cols, PETSC_COMM_SELF, PETSC_ERR_FILE_UNEXPECTED, "Matrix in file of different sizes (%" PetscInt_FMT ", %" PetscInt_FMT ") than the input matrix (%" PetscInt_FMT ", %" PetscInt_FMT ")", M, N, rows, cols);
33029566063dSJacob Faibussowitsch   PetscCall(MatGetBlockSize(mat, &bs));
33039566063dSJacob Faibussowitsch   PetscCall(MatGetLocalSize(mat, &m, &n));
33049566063dSJacob Faibussowitsch   PetscCall(PetscLayoutGetRange(mat->rmap, &rs, NULL));
33059566063dSJacob Faibussowitsch   PetscCall(PetscLayoutGetRange(mat->cmap, &cs, &ce));
33069371c9d4SSatish Balay   mbs = m / bs;
33079371c9d4SSatish Balay   nbs = n / bs;
3308b51a4376SLisandro Dalcin 
3309b51a4376SLisandro Dalcin   /* read in row lengths and build row indices */
33109566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(m + 1, &rowidxs));
33119566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryReadAll(viewer, rowidxs + 1, m, PETSC_DECIDE, M, PETSC_INT));
33129371c9d4SSatish Balay   rowidxs[0] = 0;
33139371c9d4SSatish Balay   for (i = 0; i < m; i++) rowidxs[i + 1] += rowidxs[i];
3314462c564dSBarry Smith   PetscCallMPI(MPIU_Allreduce(&rowidxs[m], &sum, 1, MPIU_INT, MPI_SUM, PetscObjectComm((PetscObject)viewer)));
33155f80ce2aSJacob Faibussowitsch   PetscCheck(sum == nz, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Inconsistent matrix data in file: nonzeros = %" PetscInt_FMT ", sum-row-lengths = %" PetscInt_FMT, nz, sum);
3316b51a4376SLisandro Dalcin 
3317b51a4376SLisandro Dalcin   /* read in column indices and matrix values */
33189566063dSJacob Faibussowitsch   PetscCall(PetscMalloc2(rowidxs[m], &colidxs, rowidxs[m], &matvals));
33199566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryReadAll(viewer, colidxs, rowidxs[m], PETSC_DETERMINE, PETSC_DETERMINE, PETSC_INT));
33209566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryReadAll(viewer, matvals, rowidxs[m], PETSC_DETERMINE, PETSC_DETERMINE, PETSC_SCALAR));
3321b51a4376SLisandro Dalcin 
3322b51a4376SLisandro Dalcin   {                /* preallocate matrix storage */
3323b51a4376SLisandro Dalcin     PetscBT    bt; /* helper bit set to count diagonal nonzeros */
3324b51a4376SLisandro Dalcin     PetscHSetI ht; /* helper hash set to count off-diagonal nonzeros */
3325618cc2edSLisandro Dalcin     PetscBool  sbaij, done;
3326b51a4376SLisandro Dalcin     PetscInt  *d_nnz, *o_nnz;
3327b51a4376SLisandro Dalcin 
33289566063dSJacob Faibussowitsch     PetscCall(PetscBTCreate(nbs, &bt));
33299566063dSJacob Faibussowitsch     PetscCall(PetscHSetICreate(&ht));
33309566063dSJacob Faibussowitsch     PetscCall(PetscCalloc2(mbs, &d_nnz, mbs, &o_nnz));
33319566063dSJacob Faibussowitsch     PetscCall(PetscObjectTypeCompare((PetscObject)mat, MATMPISBAIJ, &sbaij));
3332b51a4376SLisandro Dalcin     for (i = 0; i < mbs; i++) {
33339566063dSJacob Faibussowitsch       PetscCall(PetscBTMemzero(nbs, bt));
33349566063dSJacob Faibussowitsch       PetscCall(PetscHSetIClear(ht));
3335618cc2edSLisandro Dalcin       for (k = 0; k < bs; k++) {
3336618cc2edSLisandro Dalcin         PetscInt row = bs * i + k;
3337618cc2edSLisandro Dalcin         for (j = rowidxs[row]; j < rowidxs[row + 1]; j++) {
3338618cc2edSLisandro Dalcin           PetscInt col = colidxs[j];
3339618cc2edSLisandro Dalcin           if (!sbaij || col >= row) {
3340618cc2edSLisandro Dalcin             if (col >= cs && col < ce) {
3341618cc2edSLisandro Dalcin               if (!PetscBTLookupSet(bt, (col - cs) / bs)) d_nnz[i]++;
3342b51a4376SLisandro Dalcin             } else {
33439566063dSJacob Faibussowitsch               PetscCall(PetscHSetIQueryAdd(ht, col / bs, &done));
3344b51a4376SLisandro Dalcin               if (done) o_nnz[i]++;
3345b51a4376SLisandro Dalcin             }
3346b51a4376SLisandro Dalcin           }
3347618cc2edSLisandro Dalcin         }
3348618cc2edSLisandro Dalcin       }
3349618cc2edSLisandro Dalcin     }
33509566063dSJacob Faibussowitsch     PetscCall(PetscBTDestroy(&bt));
33519566063dSJacob Faibussowitsch     PetscCall(PetscHSetIDestroy(&ht));
33529566063dSJacob Faibussowitsch     PetscCall(MatMPIBAIJSetPreallocation(mat, bs, 0, d_nnz, 0, o_nnz));
33539566063dSJacob Faibussowitsch     PetscCall(MatMPISBAIJSetPreallocation(mat, bs, 0, d_nnz, 0, o_nnz));
33549566063dSJacob Faibussowitsch     PetscCall(PetscFree2(d_nnz, o_nnz));
3355b51a4376SLisandro Dalcin   }
3356b51a4376SLisandro Dalcin 
3357b51a4376SLisandro Dalcin   /* store matrix values */
3358b51a4376SLisandro Dalcin   for (i = 0; i < m; i++) {
3359b51a4376SLisandro Dalcin     PetscInt row = rs + i, s = rowidxs[i], e = rowidxs[i + 1];
33609927e4dfSBarry Smith     PetscUseTypeMethod(mat, setvalues, 1, &row, e - s, colidxs + s, matvals + s, INSERT_VALUES);
3361b51a4376SLisandro Dalcin   }
3362b51a4376SLisandro Dalcin 
33639566063dSJacob Faibussowitsch   PetscCall(PetscFree(rowidxs));
33649566063dSJacob Faibussowitsch   PetscCall(PetscFree2(colidxs, matvals));
33659566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(mat, MAT_FINAL_ASSEMBLY));
33669566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(mat, MAT_FINAL_ASSEMBLY));
33673ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3368b51a4376SLisandro Dalcin }
3369b51a4376SLisandro Dalcin 
3370d71ae5a4SJacob Faibussowitsch PetscErrorCode MatLoad_MPIBAIJ(Mat mat, PetscViewer viewer)
3371d71ae5a4SJacob Faibussowitsch {
33727f489da9SVaclav Hapla   PetscBool isbinary;
33734683f7a4SShri Abhyankar 
33744683f7a4SShri Abhyankar   PetscFunctionBegin;
33759566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary));
33765f80ce2aSJacob Faibussowitsch   PetscCheck(isbinary, PetscObjectComm((PetscObject)viewer), PETSC_ERR_SUP, "Viewer type %s not yet supported for reading %s matrices", ((PetscObject)viewer)->type_name, ((PetscObject)mat)->type_name);
33779566063dSJacob Faibussowitsch   PetscCall(MatLoad_MPIBAIJ_Binary(mat, viewer));
33783ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
33794683f7a4SShri Abhyankar }
33804683f7a4SShri Abhyankar 
3381133cdb44SSatish Balay /*@
338211a5261eSBarry Smith   MatMPIBAIJSetHashTableFactor - Sets the factor required to compute the size of the matrices hash table
3383133cdb44SSatish Balay 
3384133cdb44SSatish Balay   Input Parameters:
3385a2b725a8SWilliam Gropp + mat  - the matrix
3386a2b725a8SWilliam Gropp - fact - factor
3387133cdb44SSatish Balay 
338811a5261eSBarry Smith   Options Database Key:
338911a5261eSBarry Smith . -mat_use_hash_table <fact> - provide the factor
3390fee21e36SBarry Smith 
33918c890885SBarry Smith   Level: advanced
33928c890885SBarry Smith 
339367be906fSBarry Smith .seealso: `Mat`, `MATMPIBAIJ`, `MatSetOption()`
3394133cdb44SSatish Balay @*/
3395d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIBAIJSetHashTableFactor(Mat mat, PetscReal fact)
3396d71ae5a4SJacob Faibussowitsch {
33975bf65638SKris Buschelman   PetscFunctionBegin;
3398cac4c232SBarry Smith   PetscTryMethod(mat, "MatSetHashTableFactor_C", (Mat, PetscReal), (mat, fact));
33993ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
34005bf65638SKris Buschelman }
34015bf65638SKris Buschelman 
3402d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetHashTableFactor_MPIBAIJ(Mat mat, PetscReal fact)
3403d71ae5a4SJacob Faibussowitsch {
340425fdafccSSatish Balay   Mat_MPIBAIJ *baij;
3405133cdb44SSatish Balay 
3406133cdb44SSatish Balay   PetscFunctionBegin;
3407133cdb44SSatish Balay   baij          = (Mat_MPIBAIJ *)mat->data;
3408133cdb44SSatish Balay   baij->ht_fact = fact;
34093ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3410133cdb44SSatish Balay }
3411f2a5309cSSatish Balay 
3412d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIBAIJGetSeqBAIJ(Mat A, Mat *Ad, Mat *Ao, const PetscInt *colmap[])
3413d71ae5a4SJacob Faibussowitsch {
3414f2a5309cSSatish Balay   Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data;
3415ab4d48faSStefano Zampini   PetscBool    flg;
34165fd66863SKarl Rupp 
3417f2a5309cSSatish Balay   PetscFunctionBegin;
34189566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)A, MATMPIBAIJ, &flg));
34195f80ce2aSJacob Faibussowitsch   PetscCheck(flg, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "This function requires a MATMPIBAIJ matrix as input");
342021e72a00SBarry Smith   if (Ad) *Ad = a->A;
342121e72a00SBarry Smith   if (Ao) *Ao = a->B;
342221e72a00SBarry Smith   if (colmap) *colmap = a->garray;
34233ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3424f2a5309cSSatish Balay }
342585535b8eSBarry Smith 
342685535b8eSBarry Smith /*
342785535b8eSBarry Smith     Special version for direct calls from Fortran (to eliminate two function call overheads
342885535b8eSBarry Smith */
342985535b8eSBarry Smith #if defined(PETSC_HAVE_FORTRAN_CAPS)
343085535b8eSBarry Smith   #define matmpibaijsetvaluesblocked_ MATMPIBAIJSETVALUESBLOCKED
343185535b8eSBarry Smith #elif !defined(PETSC_HAVE_FORTRAN_UNDERSCORE)
343285535b8eSBarry Smith   #define matmpibaijsetvaluesblocked_ matmpibaijsetvaluesblocked
343385535b8eSBarry Smith #endif
343485535b8eSBarry Smith 
34352920cce0SJacob Faibussowitsch // PetscClangLinter pragma disable: -fdoc-synopsis-matching-symbol-name
343685535b8eSBarry Smith /*@C
343711a5261eSBarry Smith   MatMPIBAIJSetValuesBlocked - Direct Fortran call to replace call to `MatSetValuesBlocked()`
343885535b8eSBarry Smith 
3439c3339decSBarry Smith   Collective
344085535b8eSBarry Smith 
344185535b8eSBarry Smith   Input Parameters:
3442fe59aa6dSJacob Faibussowitsch + matin  - the matrix
344385535b8eSBarry Smith . min    - number of input rows
344485535b8eSBarry Smith . im     - input rows
344585535b8eSBarry Smith . nin    - number of input columns
344685535b8eSBarry Smith . in     - input columns
344785535b8eSBarry Smith . v      - numerical values input
344811a5261eSBarry Smith - addvin - `INSERT_VALUES` or `ADD_VALUES`
344985535b8eSBarry Smith 
345020f4b53cSBarry Smith   Level: advanced
345120f4b53cSBarry Smith 
3452fe59aa6dSJacob Faibussowitsch   Developer Notes:
345311a5261eSBarry Smith   This has a complete copy of `MatSetValuesBlocked_MPIBAIJ()` which is terrible code un-reuse.
345485535b8eSBarry Smith 
345567be906fSBarry Smith .seealso: `Mat`, `MatSetValuesBlocked()`
345685535b8eSBarry Smith @*/
345766976f2fSJacob Faibussowitsch PETSC_EXTERN PetscErrorCode matmpibaijsetvaluesblocked_(Mat *matin, PetscInt *min, const PetscInt im[], PetscInt *nin, const PetscInt in[], const MatScalar v[], InsertMode *addvin)
3458d71ae5a4SJacob Faibussowitsch {
345985535b8eSBarry Smith   /* convert input arguments to C version */
346085535b8eSBarry Smith   Mat        mat = *matin;
346185535b8eSBarry Smith   PetscInt   m = *min, n = *nin;
346285535b8eSBarry Smith   InsertMode addv = *addvin;
346385535b8eSBarry Smith 
346485535b8eSBarry Smith   Mat_MPIBAIJ     *baij = (Mat_MPIBAIJ *)mat->data;
346585535b8eSBarry Smith   const MatScalar *value;
346685535b8eSBarry Smith   MatScalar       *barray      = baij->barray;
3467ace3abfcSBarry Smith   PetscBool        roworiented = baij->roworiented;
346885535b8eSBarry Smith   PetscInt         i, j, ii, jj, row, col, rstart = baij->rstartbs;
346985535b8eSBarry Smith   PetscInt         rend = baij->rendbs, cstart = baij->cstartbs, stepval;
3470d0f46423SBarry Smith   PetscInt         cend = baij->cendbs, bs = mat->rmap->bs, bs2 = baij->bs2;
347185535b8eSBarry Smith 
347285535b8eSBarry Smith   PetscFunctionBegin;
347385535b8eSBarry Smith   /* tasks normally handled by MatSetValuesBlocked() */
347426fbe8dcSKarl Rupp   if (mat->insertmode == NOT_SET_VALUES) mat->insertmode = addv;
34755f80ce2aSJacob Faibussowitsch   else PetscCheck(mat->insertmode == addv, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Cannot mix add values and insert values");
34765f80ce2aSJacob Faibussowitsch   PetscCheck(!mat->factortype, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Not for factored matrix");
347785535b8eSBarry Smith   if (mat->assembled) {
347885535b8eSBarry Smith     mat->was_assembled = PETSC_TRUE;
347985535b8eSBarry Smith     mat->assembled     = PETSC_FALSE;
348085535b8eSBarry Smith   }
34819566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(MAT_SetValues, mat, 0, 0, 0));
348285535b8eSBarry Smith 
348385535b8eSBarry Smith   if (!barray) {
34849566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(bs2, &barray));
348585535b8eSBarry Smith     baij->barray = barray;
348685535b8eSBarry Smith   }
348785535b8eSBarry Smith 
348826fbe8dcSKarl Rupp   if (roworiented) stepval = (n - 1) * bs;
348926fbe8dcSKarl Rupp   else stepval = (m - 1) * bs;
349026fbe8dcSKarl Rupp 
349185535b8eSBarry Smith   for (i = 0; i < m; i++) {
349285535b8eSBarry Smith     if (im[i] < 0) continue;
34936bdcaf15SBarry Smith     PetscCheck(im[i] < baij->Mbs, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large, row %" PetscInt_FMT " max %" PetscInt_FMT, im[i], baij->Mbs - 1);
349485535b8eSBarry Smith     if (im[i] >= rstart && im[i] < rend) {
349585535b8eSBarry Smith       row = im[i] - rstart;
349685535b8eSBarry Smith       for (j = 0; j < n; j++) {
349785535b8eSBarry Smith         /* If NumCol = 1 then a copy is not required */
349885535b8eSBarry Smith         if ((roworiented) && (n == 1)) {
349985535b8eSBarry Smith           barray = (MatScalar *)v + i * bs2;
350085535b8eSBarry Smith         } else if ((!roworiented) && (m == 1)) {
350185535b8eSBarry Smith           barray = (MatScalar *)v + j * bs2;
350285535b8eSBarry Smith         } else { /* Here a copy is required */
350385535b8eSBarry Smith           if (roworiented) {
350485535b8eSBarry Smith             value = v + i * (stepval + bs) * bs + j * bs;
350585535b8eSBarry Smith           } else {
350685535b8eSBarry Smith             value = v + j * (stepval + bs) * bs + i * bs;
350785535b8eSBarry Smith           }
350885535b8eSBarry Smith           for (ii = 0; ii < bs; ii++, value += stepval) {
3509ad540459SPierre Jolivet             for (jj = 0; jj < bs; jj++) *barray++ = *value++;
351085535b8eSBarry Smith           }
351185535b8eSBarry Smith           barray -= bs2;
351285535b8eSBarry Smith         }
351385535b8eSBarry Smith 
351485535b8eSBarry Smith         if (in[j] >= cstart && in[j] < cend) {
351585535b8eSBarry Smith           col = in[j] - cstart;
35169566063dSJacob Faibussowitsch           PetscCall(MatSetValuesBlocked_SeqBAIJ_Inlined(baij->A, row, col, barray, addv, im[i], in[j]));
3517f7d195e4SLawrence Mitchell         } else if (in[j] < 0) {
3518f7d195e4SLawrence Mitchell           continue;
3519f7d195e4SLawrence Mitchell         } else {
3520f7d195e4SLawrence Mitchell           PetscCheck(in[j] < baij->Nbs, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large, col %" PetscInt_FMT " max %" PetscInt_FMT, in[j], baij->Nbs - 1);
352185535b8eSBarry Smith           if (mat->was_assembled) {
352248a46eb9SPierre Jolivet             if (!baij->colmap) PetscCall(MatCreateColmap_MPIBAIJ_Private(mat));
352385535b8eSBarry Smith 
352485535b8eSBarry Smith #if defined(PETSC_USE_DEBUG)
352585535b8eSBarry Smith   #if defined(PETSC_USE_CTABLE)
35269371c9d4SSatish Balay             {
35279371c9d4SSatish Balay               PetscInt data;
3528eec179cfSJacob Faibussowitsch               PetscCall(PetscHMapIGetWithDefault(baij->colmap, in[j] + 1, 0, &data));
352908401ef6SPierre Jolivet               PetscCheck((data - 1) % bs == 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Incorrect colmap");
353085535b8eSBarry Smith             }
353185535b8eSBarry Smith   #else
353208401ef6SPierre Jolivet             PetscCheck((baij->colmap[in[j]] - 1) % bs == 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Incorrect colmap");
353385535b8eSBarry Smith   #endif
353485535b8eSBarry Smith #endif
353585535b8eSBarry Smith #if defined(PETSC_USE_CTABLE)
3536eec179cfSJacob Faibussowitsch             PetscCall(PetscHMapIGetWithDefault(baij->colmap, in[j] + 1, 0, &col));
353785535b8eSBarry Smith             col = (col - 1) / bs;
353885535b8eSBarry Smith #else
353985535b8eSBarry Smith             col = (baij->colmap[in[j]] - 1) / bs;
354085535b8eSBarry Smith #endif
3541f4f49eeaSPierre Jolivet             if (col < 0 && !((Mat_SeqBAIJ *)baij->A->data)->nonew) {
35429566063dSJacob Faibussowitsch               PetscCall(MatDisAssemble_MPIBAIJ(mat));
354385535b8eSBarry Smith               col = in[j];
354485535b8eSBarry Smith             }
354526fbe8dcSKarl Rupp           } else col = in[j];
35469566063dSJacob Faibussowitsch           PetscCall(MatSetValuesBlocked_SeqBAIJ_Inlined(baij->B, row, col, barray, addv, im[i], in[j]));
354785535b8eSBarry Smith         }
354885535b8eSBarry Smith       }
354985535b8eSBarry Smith     } else {
355085535b8eSBarry Smith       if (!baij->donotstash) {
355185535b8eSBarry Smith         if (roworiented) {
35529566063dSJacob Faibussowitsch           PetscCall(MatStashValuesRowBlocked_Private(&mat->bstash, im[i], n, in, v, m, n, i));
355385535b8eSBarry Smith         } else {
35549566063dSJacob Faibussowitsch           PetscCall(MatStashValuesColBlocked_Private(&mat->bstash, im[i], n, in, v, m, n, i));
355585535b8eSBarry Smith         }
355685535b8eSBarry Smith       }
355785535b8eSBarry Smith     }
355885535b8eSBarry Smith   }
355985535b8eSBarry Smith 
356085535b8eSBarry Smith   /* task normally handled by MatSetValuesBlocked() */
35619566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(MAT_SetValues, mat, 0, 0, 0));
35623ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
356385535b8eSBarry Smith }
3564dfb205c3SBarry Smith 
3565dfb205c3SBarry Smith /*@
3566d8a51d2aSBarry Smith   MatCreateMPIBAIJWithArrays - creates a `MATMPIBAIJ` matrix using arrays that contain in standard block CSR format for the local rows.
3567dfb205c3SBarry Smith 
3568d083f849SBarry Smith   Collective
3569dfb205c3SBarry Smith 
3570dfb205c3SBarry Smith   Input Parameters:
3571dfb205c3SBarry Smith + comm - MPI communicator
3572dfb205c3SBarry Smith . bs   - the block size, only a block size of 1 is supported
357311a5261eSBarry Smith . m    - number of local rows (Cannot be `PETSC_DECIDE`)
3574dfb205c3SBarry Smith . n    - This value should be the same as the local size used in creating the
3575d8a51d2aSBarry Smith          x vector for the matrix-vector product $ y = Ax $. (or `PETSC_DECIDE` to have
3576d8a51d2aSBarry Smith          calculated if `N` is given) For square matrices `n` is almost always `m`.
3577d8a51d2aSBarry Smith . M    - number of global rows (or `PETSC_DETERMINE` to have calculated if `m` is given)
3578d8a51d2aSBarry Smith . N    - number of global columns (or `PETSC_DETERMINE` to have calculated if `n` is given)
3579483a2f95SBarry Smith . i    - row indices; that is i[0] = 0, i[row] = i[row-1] + number of block elements in that rowth block row of the matrix
3580dfb205c3SBarry Smith . j    - column indices
3581dfb205c3SBarry Smith - a    - matrix values
3582dfb205c3SBarry Smith 
3583dfb205c3SBarry Smith   Output Parameter:
3584dfb205c3SBarry Smith . mat - the matrix
3585dfb205c3SBarry Smith 
3586dfb205c3SBarry Smith   Level: intermediate
3587dfb205c3SBarry Smith 
3588dfb205c3SBarry Smith   Notes:
358967be906fSBarry Smith   The `i`, `j`, and `a` arrays ARE copied by this routine into the internal format used by PETSc;
3590dfb205c3SBarry Smith   thus you CANNOT change the matrix entries by changing the values of a[] after you have
359111a5261eSBarry Smith   called this routine. Use `MatCreateMPIAIJWithSplitArrays()` to avoid needing to copy the arrays.
3592dfb205c3SBarry Smith 
35933adadaf3SJed Brown   The order of the entries in values is the same as the block compressed sparse row storage format; that is, it is
35943adadaf3SJed Brown   the same as a three dimensional array in Fortran values(bs,bs,nnz) that contains the first column of the first
35953adadaf3SJed Brown   block, followed by the second column of the first block etc etc.  That is, the blocks are contiguous in memory
35963adadaf3SJed Brown   with column-major ordering within blocks.
35973adadaf3SJed Brown 
3598d8a51d2aSBarry Smith   The `i` and `j` indices are 0 based, and `i` indices are indices corresponding to the local `j` array.
3599dfb205c3SBarry Smith 
360067be906fSBarry Smith .seealso: `Mat`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`,
36017d2c085eSPierre Jolivet           `MATMPIAIJ`, `MatCreateAIJ()`, `MatCreateMPIAIJWithSplitArrays()`
3602dfb205c3SBarry Smith @*/
3603d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIBAIJWithArrays(MPI_Comm comm, PetscInt bs, PetscInt m, PetscInt n, PetscInt M, PetscInt N, const PetscInt i[], const PetscInt j[], const PetscScalar a[], Mat *mat)
3604d71ae5a4SJacob Faibussowitsch {
3605dfb205c3SBarry Smith   PetscFunctionBegin;
36065f80ce2aSJacob Faibussowitsch   PetscCheck(!i[0], PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "i (row indices) must start with 0");
36075f80ce2aSJacob Faibussowitsch   PetscCheck(m >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "local number of rows (m) cannot be PETSC_DECIDE, or negative");
36089566063dSJacob Faibussowitsch   PetscCall(MatCreate(comm, mat));
36099566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(*mat, m, n, M, N));
36109566063dSJacob Faibussowitsch   PetscCall(MatSetType(*mat, MATMPIBAIJ));
36119566063dSJacob Faibussowitsch   PetscCall(MatSetBlockSize(*mat, bs));
36129566063dSJacob Faibussowitsch   PetscCall(MatSetUp(*mat));
36139566063dSJacob Faibussowitsch   PetscCall(MatSetOption(*mat, MAT_ROW_ORIENTED, PETSC_FALSE));
36149566063dSJacob Faibussowitsch   PetscCall(MatMPIBAIJSetPreallocationCSR(*mat, bs, i, j, a));
36159566063dSJacob Faibussowitsch   PetscCall(MatSetOption(*mat, MAT_ROW_ORIENTED, PETSC_TRUE));
36163ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3617dfb205c3SBarry Smith }
3618e561ad89SHong Zhang 
3619d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIMatConcatenateSeqMat_MPIBAIJ(MPI_Comm comm, Mat inmat, PetscInt n, MatReuse scall, Mat *outmat)
3620d71ae5a4SJacob Faibussowitsch {
3621bd153df0SHong Zhang   PetscInt     m, N, i, rstart, nnz, Ii, bs, cbs;
3622bd153df0SHong Zhang   PetscInt    *indx;
3623bd153df0SHong Zhang   PetscScalar *values;
3624e561ad89SHong Zhang 
3625e561ad89SHong Zhang   PetscFunctionBegin;
36269566063dSJacob Faibussowitsch   PetscCall(MatGetSize(inmat, &m, &N));
3627bd153df0SHong Zhang   if (scall == MAT_INITIAL_MATRIX) { /* symbolic phase */
3628bd153df0SHong Zhang     Mat_SeqBAIJ *a = (Mat_SeqBAIJ *)inmat->data;
36292c6ba4edSHong Zhang     PetscInt    *dnz, *onz, mbs, Nbs, nbs;
3630bd153df0SHong Zhang     PetscInt    *bindx, rmax = a->rmax, j;
363177f764caSHong Zhang     PetscMPIInt  rank, size;
3632e561ad89SHong Zhang 
36339566063dSJacob Faibussowitsch     PetscCall(MatGetBlockSizes(inmat, &bs, &cbs));
36349371c9d4SSatish Balay     mbs = m / bs;
36359371c9d4SSatish Balay     Nbs = N / cbs;
363648a46eb9SPierre Jolivet     if (n == PETSC_DECIDE) PetscCall(PetscSplitOwnershipBlock(comm, cbs, &n, &N));
3637da91a574SPierre Jolivet     nbs = n / cbs;
3638e561ad89SHong Zhang 
36399566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(rmax, &bindx));
3640d0609cedSBarry Smith     MatPreallocateBegin(comm, mbs, nbs, dnz, onz); /* inline function, output __end and __rstart are used below */
364177f764caSHong Zhang 
36429566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Comm_rank(comm, &rank));
36439566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Comm_rank(comm, &size));
364477f764caSHong Zhang     if (rank == size - 1) {
364577f764caSHong Zhang       /* Check sum(nbs) = Nbs */
36465f80ce2aSJacob Faibussowitsch       PetscCheck(__end == Nbs, PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "Sum of local block columns %" PetscInt_FMT " != global block columns %" PetscInt_FMT, __end, Nbs);
364777f764caSHong Zhang     }
364877f764caSHong Zhang 
3649d0609cedSBarry Smith     rstart = __rstart; /* block rstart of *outmat; see inline function MatPreallocateBegin */
3650bd153df0SHong Zhang     for (i = 0; i < mbs; i++) {
36519566063dSJacob Faibussowitsch       PetscCall(MatGetRow_SeqBAIJ(inmat, i * bs, &nnz, &indx, NULL)); /* non-blocked nnz and indx */
3652647a6520SHong Zhang       nnz = nnz / bs;
3653647a6520SHong Zhang       for (j = 0; j < nnz; j++) bindx[j] = indx[j * bs] / bs;
36549566063dSJacob Faibussowitsch       PetscCall(MatPreallocateSet(i + rstart, nnz, bindx, dnz, onz));
36559566063dSJacob Faibussowitsch       PetscCall(MatRestoreRow_SeqBAIJ(inmat, i * bs, &nnz, &indx, NULL));
3656e561ad89SHong Zhang     }
36579566063dSJacob Faibussowitsch     PetscCall(PetscFree(bindx));
3658e561ad89SHong Zhang 
36599566063dSJacob Faibussowitsch     PetscCall(MatCreate(comm, outmat));
36609566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(*outmat, m, n, PETSC_DETERMINE, PETSC_DETERMINE));
36619566063dSJacob Faibussowitsch     PetscCall(MatSetBlockSizes(*outmat, bs, cbs));
36629566063dSJacob Faibussowitsch     PetscCall(MatSetType(*outmat, MATBAIJ));
36639566063dSJacob Faibussowitsch     PetscCall(MatSeqBAIJSetPreallocation(*outmat, bs, 0, dnz));
36649566063dSJacob Faibussowitsch     PetscCall(MatMPIBAIJSetPreallocation(*outmat, bs, 0, dnz, 0, onz));
3665d0609cedSBarry Smith     MatPreallocateEnd(dnz, onz);
36669566063dSJacob Faibussowitsch     PetscCall(MatSetOption(*outmat, MAT_NO_OFF_PROC_ENTRIES, PETSC_TRUE));
3667e561ad89SHong Zhang   }
3668e561ad89SHong Zhang 
3669bd153df0SHong Zhang   /* numeric phase */
36709566063dSJacob Faibussowitsch   PetscCall(MatGetBlockSizes(inmat, &bs, &cbs));
36719566063dSJacob Faibussowitsch   PetscCall(MatGetOwnershipRange(*outmat, &rstart, NULL));
3672e561ad89SHong Zhang 
3673e561ad89SHong Zhang   for (i = 0; i < m; i++) {
36749566063dSJacob Faibussowitsch     PetscCall(MatGetRow_SeqBAIJ(inmat, i, &nnz, &indx, &values));
3675e561ad89SHong Zhang     Ii = i + rstart;
36769566063dSJacob Faibussowitsch     PetscCall(MatSetValues(*outmat, 1, &Ii, nnz, indx, values, INSERT_VALUES));
36779566063dSJacob Faibussowitsch     PetscCall(MatRestoreRow_SeqBAIJ(inmat, i, &nnz, &indx, &values));
3678e561ad89SHong Zhang   }
36799566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(*outmat, MAT_FINAL_ASSEMBLY));
36809566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(*outmat, MAT_FINAL_ASSEMBLY));
36813ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3682e561ad89SHong Zhang }
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