xref: /petsc/src/mat/impls/baij/mpi/mpibaij.c (revision 97e567effd5c0e04ad7831eef7c9cdd2ee380c4b)
1be1d678aSKris Buschelman #define PETSCMAT_DLL
279bdfe76SSatish Balay 
3e090d566SSatish Balay #include "src/mat/impls/baij/mpi/mpibaij.h"   /*I  "petscmat.h"  I*/
479bdfe76SSatish Balay 
5dfbe8321SBarry Smith EXTERN PetscErrorCode MatSetUpMultiply_MPIBAIJ(Mat);
6dfbe8321SBarry Smith EXTERN PetscErrorCode DisAssemble_MPIBAIJ(Mat);
7b24ad042SBarry Smith EXTERN PetscErrorCode MatIncreaseOverlap_MPIBAIJ(Mat,PetscInt,IS[],PetscInt);
8b24ad042SBarry Smith EXTERN PetscErrorCode MatGetSubMatrices_MPIBAIJ(Mat,PetscInt,const IS[],const IS[],MatReuse,Mat *[]);
9b24ad042SBarry Smith EXTERN PetscErrorCode MatGetValues_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt [],PetscScalar []);
10b24ad042SBarry Smith EXTERN PetscErrorCode MatSetValues_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt [],const PetscScalar [],InsertMode);
11b24ad042SBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode);
12b24ad042SBarry Smith EXTERN PetscErrorCode MatGetRow_SeqBAIJ(Mat,PetscInt,PetscInt*,PetscInt*[],PetscScalar*[]);
13b24ad042SBarry Smith EXTERN PetscErrorCode MatRestoreRow_SeqBAIJ(Mat,PetscInt,PetscInt*,PetscInt*[],PetscScalar*[]);
14f4df32b1SMatthew Knepley EXTERN PetscErrorCode MatZeroRows_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscScalar);
1593fea6afSBarry Smith 
1693fea6afSBarry Smith /*  UGLY, ugly, ugly
1787828ca2SBarry Smith    When MatScalar == PetscScalar the function MatSetValuesBlocked_MPIBAIJ_MatScalar() does
1893fea6afSBarry Smith    not exist. Otherwise ..._MatScalar() takes matrix elements in single precision and
1993fea6afSBarry Smith    inserts them into the single precision data structure. The function MatSetValuesBlocked_MPIBAIJ()
2093fea6afSBarry Smith    converts the entries into single precision and then calls ..._MatScalar() to put them
2193fea6afSBarry Smith    into the single precision data structures.
2293fea6afSBarry Smith */
2393fea6afSBarry Smith #if defined(PETSC_USE_MAT_SINGLE)
24b24ad042SBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_SeqBAIJ_MatScalar(Mat,PetscInt,const PetscInt*,PetscInt,const PetscInt*,const MatScalar*,InsertMode);
25b24ad042SBarry Smith EXTERN PetscErrorCode MatSetValues_MPIBAIJ_MatScalar(Mat,PetscInt,const PetscInt*,PetscInt,const PetscInt*,const MatScalar*,InsertMode);
26b24ad042SBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_MPIBAIJ_MatScalar(Mat,PetscInt,const PetscInt*,PetscInt,const PetscInt*,const MatScalar*,InsertMode);
27b24ad042SBarry Smith EXTERN PetscErrorCode MatSetValues_MPIBAIJ_HT_MatScalar(Mat,PetscInt,const PetscInt*,PetscInt,const PetscInt*,const MatScalar*,InsertMode);
28b24ad042SBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_MPIBAIJ_HT_MatScalar(Mat,PetscInt,const PetscInt*,PetscInt,const PetscInt*,const MatScalar*,InsertMode);
2993fea6afSBarry Smith #else
306fa18ffdSBarry Smith #define MatSetValuesBlocked_SeqBAIJ_MatScalar      MatSetValuesBlocked_SeqBAIJ
3193fea6afSBarry Smith #define MatSetValues_MPIBAIJ_MatScalar             MatSetValues_MPIBAIJ
3293fea6afSBarry Smith #define MatSetValuesBlocked_MPIBAIJ_MatScalar      MatSetValuesBlocked_MPIBAIJ
336fa18ffdSBarry Smith #define MatSetValues_MPIBAIJ_HT_MatScalar          MatSetValues_MPIBAIJ_HT
346fa18ffdSBarry Smith #define MatSetValuesBlocked_MPIBAIJ_HT_MatScalar   MatSetValuesBlocked_MPIBAIJ_HT
3593fea6afSBarry Smith #endif
363b2fbd54SBarry Smith 
374a2ae208SSatish Balay #undef __FUNCT__
38985db425SBarry Smith #define __FUNCT__ "MatGetRowMaxAbs_MPIBAIJ"
39985db425SBarry Smith PetscErrorCode MatGetRowMaxAbs_MPIBAIJ(Mat A,Vec v,PetscInt idx[])
407843d17aSBarry Smith {
417843d17aSBarry Smith   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)A->data;
42dfbe8321SBarry Smith   PetscErrorCode ierr;
43985db425SBarry Smith   PetscInt       i,*idxb = 0;
4487828ca2SBarry Smith   PetscScalar    *va,*vb;
457843d17aSBarry Smith   Vec            vtmp;
467843d17aSBarry Smith 
477843d17aSBarry Smith   PetscFunctionBegin;
487843d17aSBarry Smith 
49985db425SBarry Smith   ierr = MatGetRowMaxAbs(a->A,v,idx);CHKERRQ(ierr);
501ebc52fbSHong Zhang   ierr = VecGetArray(v,&va);CHKERRQ(ierr);
51985db425SBarry Smith   if (idx) {
52ff6e566aSBarry Smith     for (i=0; i<A->cmap.n; i++) {if (PetscAbsScalar(va[i])) idx[i] += A->cmap.rstart;}
53985db425SBarry Smith   }
547843d17aSBarry Smith 
55899cda47SBarry Smith   ierr = VecCreateSeq(PETSC_COMM_SELF,A->rmap.n,&vtmp);CHKERRQ(ierr);
56985db425SBarry Smith   if (idx) {ierr = PetscMalloc(A->rmap.n*sizeof(PetscInt),&idxb);CHKERRQ(ierr);}
57985db425SBarry Smith   ierr = MatGetRowMaxAbs(a->B,vtmp,idxb);CHKERRQ(ierr);
581ebc52fbSHong Zhang   ierr = VecGetArray(vtmp,&vb);CHKERRQ(ierr);
597843d17aSBarry Smith 
60899cda47SBarry Smith   for (i=0; i<A->rmap.n; i++){
61985db425SBarry Smith     if (PetscAbsScalar(va[i]) < PetscAbsScalar(vb[i])) {va[i] = vb[i]; if (idx) idx[i] = A->cmap.bs*a->garray[idxb[i]/A->cmap.bs] + (idxb[i] % A->cmap.bs);}
627843d17aSBarry Smith   }
637843d17aSBarry Smith 
641ebc52fbSHong Zhang   ierr = VecRestoreArray(v,&va);CHKERRQ(ierr);
651ebc52fbSHong Zhang   ierr = VecRestoreArray(vtmp,&vb);CHKERRQ(ierr);
66985db425SBarry Smith   if (idxb) {ierr = PetscFree(idxb);CHKERRQ(ierr);}
67ac355199SBarry Smith   ierr = VecDestroy(vtmp);CHKERRQ(ierr);
687843d17aSBarry Smith   PetscFunctionReturn(0);
697843d17aSBarry Smith }
707843d17aSBarry Smith 
717fc3c18eSBarry Smith EXTERN_C_BEGIN
724a2ae208SSatish Balay #undef __FUNCT__
734a2ae208SSatish Balay #define __FUNCT__ "MatStoreValues_MPIBAIJ"
74be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatStoreValues_MPIBAIJ(Mat mat)
757fc3c18eSBarry Smith {
767fc3c18eSBarry Smith   Mat_MPIBAIJ    *aij = (Mat_MPIBAIJ *)mat->data;
77dfbe8321SBarry Smith   PetscErrorCode ierr;
787fc3c18eSBarry Smith 
797fc3c18eSBarry Smith   PetscFunctionBegin;
807fc3c18eSBarry Smith   ierr = MatStoreValues(aij->A);CHKERRQ(ierr);
817fc3c18eSBarry Smith   ierr = MatStoreValues(aij->B);CHKERRQ(ierr);
827fc3c18eSBarry Smith   PetscFunctionReturn(0);
837fc3c18eSBarry Smith }
847fc3c18eSBarry Smith EXTERN_C_END
857fc3c18eSBarry Smith 
867fc3c18eSBarry Smith EXTERN_C_BEGIN
874a2ae208SSatish Balay #undef __FUNCT__
884a2ae208SSatish Balay #define __FUNCT__ "MatRetrieveValues_MPIBAIJ"
89be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatRetrieveValues_MPIBAIJ(Mat mat)
907fc3c18eSBarry Smith {
917fc3c18eSBarry Smith   Mat_MPIBAIJ    *aij = (Mat_MPIBAIJ *)mat->data;
92dfbe8321SBarry Smith   PetscErrorCode ierr;
937fc3c18eSBarry Smith 
947fc3c18eSBarry Smith   PetscFunctionBegin;
957fc3c18eSBarry Smith   ierr = MatRetrieveValues(aij->A);CHKERRQ(ierr);
967fc3c18eSBarry Smith   ierr = MatRetrieveValues(aij->B);CHKERRQ(ierr);
977fc3c18eSBarry Smith   PetscFunctionReturn(0);
987fc3c18eSBarry Smith }
997fc3c18eSBarry Smith EXTERN_C_END
1007fc3c18eSBarry Smith 
101537820f0SBarry Smith /*
102537820f0SBarry Smith      Local utility routine that creates a mapping from the global column
10357b952d6SSatish Balay    number to the local number in the off-diagonal part of the local
10457b952d6SSatish Balay    storage of the matrix.  This is done in a non scable way since the
10557b952d6SSatish Balay    length of colmap equals the global matrix length.
10657b952d6SSatish Balay */
1074a2ae208SSatish Balay #undef __FUNCT__
1084a2ae208SSatish Balay #define __FUNCT__ "CreateColmap_MPIBAIJ_Private"
109dfbe8321SBarry Smith PetscErrorCode CreateColmap_MPIBAIJ_Private(Mat mat)
11057b952d6SSatish Balay {
11157b952d6SSatish Balay   Mat_MPIBAIJ    *baij = (Mat_MPIBAIJ*)mat->data;
11257b952d6SSatish Balay   Mat_SeqBAIJ    *B = (Mat_SeqBAIJ*)baij->B->data;
1136849ba73SBarry Smith   PetscErrorCode ierr;
114899cda47SBarry Smith   PetscInt       nbs = B->nbs,i,bs=mat->rmap.bs;
11557b952d6SSatish Balay 
116d64ed03dSBarry Smith   PetscFunctionBegin;
117aa482453SBarry Smith #if defined (PETSC_USE_CTABLE)
118f14a1c24SBarry Smith   ierr = PetscTableCreate(baij->nbs,&baij->colmap);CHKERRQ(ierr);
11948e59246SSatish Balay   for (i=0; i<nbs; i++){
1200f5bd95cSBarry Smith     ierr = PetscTableAdd(baij->colmap,baij->garray[i]+1,i*bs+1);CHKERRQ(ierr);
12148e59246SSatish Balay   }
12248e59246SSatish Balay #else
123b24ad042SBarry Smith   ierr = PetscMalloc((baij->Nbs+1)*sizeof(PetscInt),&baij->colmap);CHKERRQ(ierr);
12452e6d16bSBarry Smith   ierr = PetscLogObjectMemory(mat,baij->Nbs*sizeof(PetscInt));CHKERRQ(ierr);
125b24ad042SBarry Smith   ierr = PetscMemzero(baij->colmap,baij->Nbs*sizeof(PetscInt));CHKERRQ(ierr);
126928fc39bSSatish Balay   for (i=0; i<nbs; i++) baij->colmap[baij->garray[i]] = i*bs+1;
12748e59246SSatish Balay #endif
1283a40ed3dSBarry Smith   PetscFunctionReturn(0);
12957b952d6SSatish Balay }
13057b952d6SSatish Balay 
13180c1aa95SSatish Balay #define CHUNKSIZE  10
13280c1aa95SSatish Balay 
133f5e9677aSSatish Balay #define  MatSetValues_SeqBAIJ_A_Private(row,col,value,addv) \
13480c1aa95SSatish Balay { \
13580c1aa95SSatish Balay  \
13680c1aa95SSatish Balay     brow = row/bs;  \
13780c1aa95SSatish Balay     rp   = aj + ai[brow]; ap = aa + bs2*ai[brow]; \
138ac7a638eSSatish Balay     rmax = aimax[brow]; nrow = ailen[brow]; \
13980c1aa95SSatish Balay       bcol = col/bs; \
14080c1aa95SSatish Balay       ridx = row % bs; cidx = col % bs; \
141ab26458aSBarry Smith       low = 0; high = nrow; \
142ab26458aSBarry Smith       while (high-low > 3) { \
143ab26458aSBarry Smith         t = (low+high)/2; \
144ab26458aSBarry Smith         if (rp[t] > bcol) high = t; \
145ab26458aSBarry Smith         else              low  = t; \
146ab26458aSBarry Smith       } \
147ab26458aSBarry Smith       for (_i=low; _i<high; _i++) { \
14880c1aa95SSatish Balay         if (rp[_i] > bcol) break; \
14980c1aa95SSatish Balay         if (rp[_i] == bcol) { \
15080c1aa95SSatish Balay           bap  = ap +  bs2*_i + bs*cidx + ridx; \
151eada6651SSatish Balay           if (addv == ADD_VALUES) *bap += value;  \
152eada6651SSatish Balay           else                    *bap  = value;  \
153ac7a638eSSatish Balay           goto a_noinsert; \
15480c1aa95SSatish Balay         } \
15580c1aa95SSatish Balay       } \
15689280ab3SLois Curfman McInnes       if (a->nonew == 1) goto a_noinsert; \
157085a36d4SBarry Smith       if (a->nonew == -1) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \
158421e10b8SBarry Smith       MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,brow,bcol,rmax,aa,ai,aj,rp,ap,aimax,a->nonew,MatScalar); \
15980c1aa95SSatish Balay       N = nrow++ - 1;  \
16080c1aa95SSatish Balay       /* shift up all the later entries in this row */ \
16180c1aa95SSatish Balay       for (ii=N; ii>=_i; ii--) { \
16280c1aa95SSatish Balay         rp[ii+1] = rp[ii]; \
1633eda8832SBarry Smith         ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \
16480c1aa95SSatish Balay       } \
1653eda8832SBarry Smith       if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr); }  \
16680c1aa95SSatish Balay       rp[_i]                      = bcol;  \
16780c1aa95SSatish Balay       ap[bs2*_i + bs*cidx + ridx] = value;  \
168ac7a638eSSatish Balay       a_noinsert:; \
16980c1aa95SSatish Balay     ailen[brow] = nrow; \
17080c1aa95SSatish Balay }
17157b952d6SSatish Balay 
172ac7a638eSSatish Balay #define  MatSetValues_SeqBAIJ_B_Private(row,col,value,addv) \
173ac7a638eSSatish Balay { \
174ac7a638eSSatish Balay     brow = row/bs;  \
175ac7a638eSSatish Balay     rp   = bj + bi[brow]; ap = ba + bs2*bi[brow]; \
176ac7a638eSSatish Balay     rmax = bimax[brow]; nrow = bilen[brow]; \
177ac7a638eSSatish Balay       bcol = col/bs; \
178ac7a638eSSatish Balay       ridx = row % bs; cidx = col % bs; \
179ac7a638eSSatish Balay       low = 0; high = nrow; \
180ac7a638eSSatish Balay       while (high-low > 3) { \
181ac7a638eSSatish Balay         t = (low+high)/2; \
182ac7a638eSSatish Balay         if (rp[t] > bcol) high = t; \
183ac7a638eSSatish Balay         else              low  = t; \
184ac7a638eSSatish Balay       } \
185ac7a638eSSatish Balay       for (_i=low; _i<high; _i++) { \
186ac7a638eSSatish Balay         if (rp[_i] > bcol) break; \
187ac7a638eSSatish Balay         if (rp[_i] == bcol) { \
188ac7a638eSSatish Balay           bap  = ap +  bs2*_i + bs*cidx + ridx; \
189ac7a638eSSatish Balay           if (addv == ADD_VALUES) *bap += value;  \
190ac7a638eSSatish Balay           else                    *bap  = value;  \
191ac7a638eSSatish Balay           goto b_noinsert; \
192ac7a638eSSatish Balay         } \
193ac7a638eSSatish Balay       } \
19489280ab3SLois Curfman McInnes       if (b->nonew == 1) goto b_noinsert; \
195085a36d4SBarry Smith       if (b->nonew == -1) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \
196421e10b8SBarry Smith       MatSeqXAIJReallocateAIJ(B,b->mbs,bs2,nrow,brow,bcol,rmax,ba,bi,bj,rp,ap,bimax,b->nonew,MatScalar); \
197085a36d4SBarry Smith       CHKMEMQ;\
198ac7a638eSSatish Balay       N = nrow++ - 1;  \
199ac7a638eSSatish Balay       /* shift up all the later entries in this row */ \
200ac7a638eSSatish Balay       for (ii=N; ii>=_i; ii--) { \
201ac7a638eSSatish Balay         rp[ii+1] = rp[ii]; \
2023eda8832SBarry Smith         ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \
203ac7a638eSSatish Balay       } \
2043eda8832SBarry Smith       if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr);}  \
205ac7a638eSSatish Balay       rp[_i]                      = bcol;  \
206ac7a638eSSatish Balay       ap[bs2*_i + bs*cidx + ridx] = value;  \
207ac7a638eSSatish Balay       b_noinsert:; \
208ac7a638eSSatish Balay     bilen[brow] = nrow; \
209ac7a638eSSatish Balay }
210ac7a638eSSatish Balay 
21193fea6afSBarry Smith #if defined(PETSC_USE_MAT_SINGLE)
2124a2ae208SSatish Balay #undef __FUNCT__
2134a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_MPIBAIJ"
214b24ad042SBarry Smith PetscErrorCode MatSetValues_MPIBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv)
21557b952d6SSatish Balay {
2166fa18ffdSBarry Smith   Mat_MPIBAIJ    *b = (Mat_MPIBAIJ*)mat->data;
217dfbe8321SBarry Smith   PetscErrorCode ierr;
218b24ad042SBarry Smith   PetscInt       i,N = m*n;
2196fa18ffdSBarry Smith   MatScalar      *vsingle;
22093fea6afSBarry Smith 
22193fea6afSBarry Smith   PetscFunctionBegin;
2226fa18ffdSBarry Smith   if (N > b->setvalueslen) {
22305b42c5fSBarry Smith     ierr = PetscFree(b->setvaluescopy);CHKERRQ(ierr);
22482502324SSatish Balay     ierr = PetscMalloc(N*sizeof(MatScalar),&b->setvaluescopy);CHKERRQ(ierr);
2256fa18ffdSBarry Smith     b->setvalueslen  = N;
2266fa18ffdSBarry Smith   }
2276fa18ffdSBarry Smith   vsingle = b->setvaluescopy;
2286fa18ffdSBarry Smith 
22993fea6afSBarry Smith   for (i=0; i<N; i++) {
23093fea6afSBarry Smith     vsingle[i] = v[i];
23193fea6afSBarry Smith   }
23293fea6afSBarry Smith   ierr = MatSetValues_MPIBAIJ_MatScalar(mat,m,im,n,in,vsingle,addv);CHKERRQ(ierr);
23393fea6afSBarry Smith   PetscFunctionReturn(0);
23493fea6afSBarry Smith }
23593fea6afSBarry Smith 
2364a2ae208SSatish Balay #undef __FUNCT__
2374a2ae208SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_MPIBAIJ"
238b24ad042SBarry Smith PetscErrorCode MatSetValuesBlocked_MPIBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv)
23993fea6afSBarry Smith {
2406fa18ffdSBarry Smith   Mat_MPIBAIJ    *b = (Mat_MPIBAIJ*)mat->data;
241dfbe8321SBarry Smith   PetscErrorCode ierr;
242b24ad042SBarry Smith   PetscInt       i,N = m*n*b->bs2;
2436fa18ffdSBarry Smith   MatScalar      *vsingle;
24493fea6afSBarry Smith 
24593fea6afSBarry Smith   PetscFunctionBegin;
2466fa18ffdSBarry Smith   if (N > b->setvalueslen) {
24705b42c5fSBarry Smith     ierr = PetscFree(b->setvaluescopy);CHKERRQ(ierr);
24882502324SSatish Balay     ierr = PetscMalloc(N*sizeof(MatScalar),&b->setvaluescopy);CHKERRQ(ierr);
2496fa18ffdSBarry Smith     b->setvalueslen  = N;
2506fa18ffdSBarry Smith   }
2516fa18ffdSBarry Smith   vsingle = b->setvaluescopy;
25293fea6afSBarry Smith   for (i=0; i<N; i++) {
25393fea6afSBarry Smith     vsingle[i] = v[i];
25493fea6afSBarry Smith   }
25593fea6afSBarry Smith   ierr = MatSetValuesBlocked_MPIBAIJ_MatScalar(mat,m,im,n,in,vsingle,addv);CHKERRQ(ierr);
25693fea6afSBarry Smith   PetscFunctionReturn(0);
25793fea6afSBarry Smith }
2586fa18ffdSBarry Smith 
2594a2ae208SSatish Balay #undef __FUNCT__
2604a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_MPIBAIJ_HT"
261b24ad042SBarry Smith PetscErrorCode MatSetValues_MPIBAIJ_HT(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv)
2626fa18ffdSBarry Smith {
2636fa18ffdSBarry Smith   Mat_MPIBAIJ    *b = (Mat_MPIBAIJ*)mat->data;
264dfbe8321SBarry Smith   PetscErrorCode ierr;
265b24ad042SBarry Smith   PetscInt       i,N = m*n;
2666fa18ffdSBarry Smith   MatScalar      *vsingle;
2676fa18ffdSBarry Smith 
2686fa18ffdSBarry Smith   PetscFunctionBegin;
2696fa18ffdSBarry Smith   if (N > b->setvalueslen) {
27005b42c5fSBarry Smith     ierr = PetscFree(b->setvaluescopy);CHKERRQ(ierr);
27182502324SSatish Balay     ierr = PetscMalloc(N*sizeof(MatScalar),&b->setvaluescopy);CHKERRQ(ierr);
2726fa18ffdSBarry Smith     b->setvalueslen  = N;
2736fa18ffdSBarry Smith   }
2746fa18ffdSBarry Smith   vsingle = b->setvaluescopy;
2756fa18ffdSBarry Smith   for (i=0; i<N; i++) {
2766fa18ffdSBarry Smith     vsingle[i] = v[i];
2776fa18ffdSBarry Smith   }
2786fa18ffdSBarry Smith   ierr = MatSetValues_MPIBAIJ_HT_MatScalar(mat,m,im,n,in,vsingle,addv);CHKERRQ(ierr);
2796fa18ffdSBarry Smith   PetscFunctionReturn(0);
2806fa18ffdSBarry Smith }
2816fa18ffdSBarry Smith 
2824a2ae208SSatish Balay #undef __FUNCT__
2834a2ae208SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_MPIBAIJ_HT"
284b24ad042SBarry Smith PetscErrorCode MatSetValuesBlocked_MPIBAIJ_HT(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv)
2856fa18ffdSBarry Smith {
2866fa18ffdSBarry Smith   Mat_MPIBAIJ    *b = (Mat_MPIBAIJ*)mat->data;
287dfbe8321SBarry Smith   PetscErrorCode ierr;
288b24ad042SBarry Smith   PetscInt       i,N = m*n*b->bs2;
2896fa18ffdSBarry Smith   MatScalar      *vsingle;
2906fa18ffdSBarry Smith 
2916fa18ffdSBarry Smith   PetscFunctionBegin;
2926fa18ffdSBarry Smith   if (N > b->setvalueslen) {
29305b42c5fSBarry Smith     ierr = PetscFree(b->setvaluescopy);CHKERRQ(ierr);
29482502324SSatish Balay     ierr = PetscMalloc(N*sizeof(MatScalar),&b->setvaluescopy);CHKERRQ(ierr);
2956fa18ffdSBarry Smith     b->setvalueslen  = N;
2966fa18ffdSBarry Smith   }
2976fa18ffdSBarry Smith   vsingle = b->setvaluescopy;
2986fa18ffdSBarry Smith   for (i=0; i<N; i++) {
2996fa18ffdSBarry Smith     vsingle[i] = v[i];
3006fa18ffdSBarry Smith   }
3016fa18ffdSBarry Smith   ierr = MatSetValuesBlocked_MPIBAIJ_HT_MatScalar(mat,m,im,n,in,vsingle,addv);CHKERRQ(ierr);
3026fa18ffdSBarry Smith   PetscFunctionReturn(0);
3036fa18ffdSBarry Smith }
30493fea6afSBarry Smith #endif
30593fea6afSBarry Smith 
3064a2ae208SSatish Balay #undef __FUNCT__
307e03e44c9SSatish Balay #define __FUNCT__ "MatSetValues_MPIBAIJ_MatScalar"
308b24ad042SBarry Smith PetscErrorCode MatSetValues_MPIBAIJ_MatScalar(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const MatScalar v[],InsertMode addv)
30993fea6afSBarry Smith {
31057b952d6SSatish Balay   Mat_MPIBAIJ    *baij = (Mat_MPIBAIJ*)mat->data;
31193fea6afSBarry Smith   MatScalar      value;
312273d9f13SBarry Smith   PetscTruth     roworiented = baij->roworiented;
313dfbe8321SBarry Smith   PetscErrorCode ierr;
314b24ad042SBarry Smith   PetscInt       i,j,row,col;
315899cda47SBarry Smith   PetscInt       rstart_orig=mat->rmap.rstart;
316899cda47SBarry Smith   PetscInt       rend_orig=mat->rmap.rend,cstart_orig=mat->cmap.rstart;
317899cda47SBarry Smith   PetscInt       cend_orig=mat->cmap.rend,bs=mat->rmap.bs;
31857b952d6SSatish Balay 
319eada6651SSatish Balay   /* Some Variables required in the macro */
32080c1aa95SSatish Balay   Mat            A = baij->A;
32180c1aa95SSatish Balay   Mat_SeqBAIJ    *a = (Mat_SeqBAIJ*)(A)->data;
322b24ad042SBarry Smith   PetscInt       *aimax=a->imax,*ai=a->i,*ailen=a->ilen,*aj=a->j;
3233eda8832SBarry Smith   MatScalar      *aa=a->a;
324ac7a638eSSatish Balay 
325ac7a638eSSatish Balay   Mat            B = baij->B;
326ac7a638eSSatish Balay   Mat_SeqBAIJ    *b = (Mat_SeqBAIJ*)(B)->data;
327b24ad042SBarry Smith   PetscInt       *bimax=b->imax,*bi=b->i,*bilen=b->ilen,*bj=b->j;
3283eda8832SBarry Smith   MatScalar      *ba=b->a;
329ac7a638eSSatish Balay 
330b24ad042SBarry Smith   PetscInt       *rp,ii,nrow,_i,rmax,N,brow,bcol;
331b24ad042SBarry Smith   PetscInt       low,high,t,ridx,cidx,bs2=a->bs2;
3323eda8832SBarry Smith   MatScalar      *ap,*bap;
33380c1aa95SSatish Balay 
334d64ed03dSBarry Smith   PetscFunctionBegin;
33557b952d6SSatish Balay   for (i=0; i<m; i++) {
3365ef9f2a5SBarry Smith     if (im[i] < 0) continue;
3372515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
338899cda47SBarry Smith     if (im[i] >= mat->rmap.N) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],mat->rmap.N-1);
339639f9d9dSBarry Smith #endif
34057b952d6SSatish Balay     if (im[i] >= rstart_orig && im[i] < rend_orig) {
34157b952d6SSatish Balay       row = im[i] - rstart_orig;
34257b952d6SSatish Balay       for (j=0; j<n; j++) {
34357b952d6SSatish Balay         if (in[j] >= cstart_orig && in[j] < cend_orig){
34457b952d6SSatish Balay           col = in[j] - cstart_orig;
34557b952d6SSatish Balay           if (roworiented) value = v[i*n+j]; else value = v[i+j*m];
346f5e9677aSSatish Balay           MatSetValues_SeqBAIJ_A_Private(row,col,value,addv);
34780c1aa95SSatish Balay           /* ierr = MatSetValues_SeqBAIJ(baij->A,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */
34873959e64SBarry Smith         } else if (in[j] < 0) continue;
3492515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
350899cda47SBarry Smith         else if (in[j] >= mat->cmap.N) {SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",in[i],mat->cmap.N-1);}
351639f9d9dSBarry Smith #endif
35257b952d6SSatish Balay         else {
35357b952d6SSatish Balay           if (mat->was_assembled) {
354905e6a2fSBarry Smith             if (!baij->colmap) {
355905e6a2fSBarry Smith               ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
356905e6a2fSBarry Smith             }
357aa482453SBarry Smith #if defined (PETSC_USE_CTABLE)
3580f5bd95cSBarry Smith             ierr = PetscTableFind(baij->colmap,in[j]/bs + 1,&col);CHKERRQ(ierr);
359bba1ac68SSatish Balay             col  = col - 1;
36048e59246SSatish Balay #else
361bba1ac68SSatish Balay             col = baij->colmap[in[j]/bs] - 1;
36248e59246SSatish Balay #endif
36357b952d6SSatish Balay             if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) {
36457b952d6SSatish Balay               ierr = DisAssemble_MPIBAIJ(mat);CHKERRQ(ierr);
3658295de27SSatish Balay               col =  in[j];
3669bf004c3SSatish Balay               /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */
3679bf004c3SSatish Balay               B = baij->B;
3689bf004c3SSatish Balay               b = (Mat_SeqBAIJ*)(B)->data;
3699bf004c3SSatish Balay               bimax=b->imax;bi=b->i;bilen=b->ilen;bj=b->j;
3709bf004c3SSatish Balay               ba=b->a;
371bba1ac68SSatish Balay             } else col += in[j]%bs;
3728295de27SSatish Balay           } else col = in[j];
37357b952d6SSatish Balay           if (roworiented) value = v[i*n+j]; else value = v[i+j*m];
37490da58bdSSatish Balay           MatSetValues_SeqBAIJ_B_Private(row,col,value,addv);
37590da58bdSSatish Balay           /* ierr = MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */
37657b952d6SSatish Balay         }
37757b952d6SSatish Balay       }
378d64ed03dSBarry Smith     } else {
37990f02eecSBarry Smith       if (!baij->donotstash) {
380ff2fd236SBarry Smith         if (roworiented) {
3816fa18ffdSBarry Smith           ierr = MatStashValuesRow_Private(&mat->stash,im[i],n,in,v+i*n);CHKERRQ(ierr);
382ff2fd236SBarry Smith         } else {
3836fa18ffdSBarry Smith           ierr = MatStashValuesCol_Private(&mat->stash,im[i],n,in,v+i,m);CHKERRQ(ierr);
38457b952d6SSatish Balay         }
38557b952d6SSatish Balay       }
38657b952d6SSatish Balay     }
38790f02eecSBarry Smith   }
3883a40ed3dSBarry Smith   PetscFunctionReturn(0);
38957b952d6SSatish Balay }
39057b952d6SSatish Balay 
3914a2ae208SSatish Balay #undef __FUNCT__
3924a2ae208SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_MPIBAIJ_MatScalar"
393b24ad042SBarry Smith PetscErrorCode MatSetValuesBlocked_MPIBAIJ_MatScalar(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const MatScalar v[],InsertMode addv)
394ab26458aSBarry Smith {
395ab26458aSBarry Smith   Mat_MPIBAIJ     *baij = (Mat_MPIBAIJ*)mat->data;
396f15d580aSBarry Smith   const MatScalar *value;
397f15d580aSBarry Smith   MatScalar       *barray=baij->barray;
398273d9f13SBarry Smith   PetscTruth      roworiented = baij->roworiented;
399dfbe8321SBarry Smith   PetscErrorCode  ierr;
400899cda47SBarry Smith   PetscInt        i,j,ii,jj,row,col,rstart=baij->rstartbs;
401899cda47SBarry Smith   PetscInt        rend=baij->rendbs,cstart=baij->cstartbs,stepval;
402899cda47SBarry Smith   PetscInt        cend=baij->cendbs,bs=mat->rmap.bs,bs2=baij->bs2;
403ab26458aSBarry Smith 
404b16ae2b1SBarry Smith   PetscFunctionBegin;
40530793edcSSatish Balay   if(!barray) {
40682502324SSatish Balay     ierr         = PetscMalloc(bs2*sizeof(MatScalar),&barray);CHKERRQ(ierr);
40782502324SSatish Balay     baij->barray = barray;
40830793edcSSatish Balay   }
40930793edcSSatish Balay 
410ab26458aSBarry Smith   if (roworiented) {
411ab26458aSBarry Smith     stepval = (n-1)*bs;
412ab26458aSBarry Smith   } else {
413ab26458aSBarry Smith     stepval = (m-1)*bs;
414ab26458aSBarry Smith   }
415ab26458aSBarry Smith   for (i=0; i<m; i++) {
4165ef9f2a5SBarry Smith     if (im[i] < 0) continue;
4172515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
41877431f27SBarry Smith     if (im[i] >= baij->Mbs) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large, row %D max %D",im[i],baij->Mbs-1);
419ab26458aSBarry Smith #endif
420ab26458aSBarry Smith     if (im[i] >= rstart && im[i] < rend) {
421ab26458aSBarry Smith       row = im[i] - rstart;
422ab26458aSBarry Smith       for (j=0; j<n; j++) {
42315b57d14SSatish Balay         /* If NumCol = 1 then a copy is not required */
42415b57d14SSatish Balay         if ((roworiented) && (n == 1)) {
425f15d580aSBarry Smith           barray = (MatScalar*)v + i*bs2;
42615b57d14SSatish Balay         } else if((!roworiented) && (m == 1)) {
427f15d580aSBarry Smith           barray = (MatScalar*)v + j*bs2;
42815b57d14SSatish Balay         } else { /* Here a copy is required */
429ab26458aSBarry Smith           if (roworiented) {
430ab26458aSBarry Smith             value = v + i*(stepval+bs)*bs + j*bs;
431ab26458aSBarry Smith           } else {
432ab26458aSBarry Smith             value = v + j*(stepval+bs)*bs + i*bs;
433abef11f7SSatish Balay           }
43447513183SBarry Smith           for (ii=0; ii<bs; ii++,value+=stepval) {
43547513183SBarry Smith             for (jj=0; jj<bs; jj++) {
43630793edcSSatish Balay               *barray++  = *value++;
43747513183SBarry Smith             }
43847513183SBarry Smith           }
43930793edcSSatish Balay           barray -=bs2;
44015b57d14SSatish Balay         }
441abef11f7SSatish Balay 
442abef11f7SSatish Balay         if (in[j] >= cstart && in[j] < cend){
443abef11f7SSatish Balay           col  = in[j] - cstart;
44493fea6afSBarry Smith           ierr = MatSetValuesBlocked_SeqBAIJ_MatScalar(baij->A,1,&row,1,&col,barray,addv);CHKERRQ(ierr);
445ab26458aSBarry Smith         }
4465ef9f2a5SBarry Smith         else if (in[j] < 0) continue;
4472515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
44877431f27SBarry Smith         else if (in[j] >= baij->Nbs) {SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large, col %D max %D",in[j],baij->Nbs-1);}
449ab26458aSBarry Smith #endif
450ab26458aSBarry Smith         else {
451ab26458aSBarry Smith           if (mat->was_assembled) {
452ab26458aSBarry Smith             if (!baij->colmap) {
453ab26458aSBarry Smith               ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
454ab26458aSBarry Smith             }
455a5eb4965SSatish Balay 
4562515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
457aa482453SBarry Smith #if defined (PETSC_USE_CTABLE)
458b24ad042SBarry Smith             { PetscInt data;
4590f5bd95cSBarry Smith               ierr = PetscTableFind(baij->colmap,in[j]+1,&data);CHKERRQ(ierr);
46029bbc08cSBarry Smith               if ((data - 1) % bs) SETERRQ(PETSC_ERR_PLIB,"Incorrect colmap");
461fa46199cSSatish Balay             }
46248e59246SSatish Balay #else
46329bbc08cSBarry Smith             if ((baij->colmap[in[j]] - 1) % bs) SETERRQ(PETSC_ERR_PLIB,"Incorrect colmap");
464a5eb4965SSatish Balay #endif
46548e59246SSatish Balay #endif
466aa482453SBarry Smith #if defined (PETSC_USE_CTABLE)
4670f5bd95cSBarry Smith 	    ierr = PetscTableFind(baij->colmap,in[j]+1,&col);CHKERRQ(ierr);
468fa46199cSSatish Balay             col  = (col - 1)/bs;
46948e59246SSatish Balay #else
470a5eb4965SSatish Balay             col = (baij->colmap[in[j]] - 1)/bs;
47148e59246SSatish Balay #endif
472ab26458aSBarry Smith             if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) {
473ab26458aSBarry Smith               ierr = DisAssemble_MPIBAIJ(mat);CHKERRQ(ierr);
474ab26458aSBarry Smith               col =  in[j];
475ab26458aSBarry Smith             }
476ab26458aSBarry Smith           }
477ab26458aSBarry Smith           else col = in[j];
47893fea6afSBarry Smith           ierr = MatSetValuesBlocked_SeqBAIJ_MatScalar(baij->B,1,&row,1,&col,barray,addv);CHKERRQ(ierr);
479ab26458aSBarry Smith         }
480ab26458aSBarry Smith       }
481d64ed03dSBarry Smith     } else {
482ab26458aSBarry Smith       if (!baij->donotstash) {
483ff2fd236SBarry Smith         if (roworiented) {
4846fa18ffdSBarry Smith           ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
485ff2fd236SBarry Smith         } else {
4866fa18ffdSBarry Smith           ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
487ff2fd236SBarry Smith         }
488abef11f7SSatish Balay       }
489ab26458aSBarry Smith     }
490ab26458aSBarry Smith   }
4913a40ed3dSBarry Smith   PetscFunctionReturn(0);
492ab26458aSBarry Smith }
4936fa18ffdSBarry Smith 
4940bdbc534SSatish Balay #define HASH_KEY 0.6180339887
495b24ad042SBarry Smith #define HASH(size,key,tmp) (tmp = (key)*HASH_KEY,(PetscInt)((size)*(tmp-(PetscInt)tmp)))
496b24ad042SBarry Smith /* #define HASH(size,key) ((PetscInt)((size)*fmod(((key)*HASH_KEY),1))) */
497b24ad042SBarry Smith /* #define HASH(size,key,tmp) ((PetscInt)((size)*fmod(((key)*HASH_KEY),1))) */
4984a2ae208SSatish Balay #undef __FUNCT__
4994a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_MPIBAIJ_HT_MatScalar"
500b24ad042SBarry Smith PetscErrorCode MatSetValues_MPIBAIJ_HT_MatScalar(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const MatScalar v[],InsertMode addv)
5010bdbc534SSatish Balay {
5020bdbc534SSatish Balay   Mat_MPIBAIJ    *baij = (Mat_MPIBAIJ*)mat->data;
503273d9f13SBarry Smith   PetscTruth     roworiented = baij->roworiented;
504dfbe8321SBarry Smith   PetscErrorCode ierr;
505b24ad042SBarry Smith   PetscInt       i,j,row,col;
506899cda47SBarry Smith   PetscInt       rstart_orig=mat->rmap.rstart;
507899cda47SBarry Smith   PetscInt       rend_orig=mat->rmap.rend,Nbs=baij->Nbs;
508899cda47SBarry Smith   PetscInt       h1,key,size=baij->ht_size,bs=mat->rmap.bs,*HT=baij->ht,idx;
509329f5518SBarry Smith   PetscReal      tmp;
5103eda8832SBarry Smith   MatScalar      **HD = baij->hd,value;
5112515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
512b24ad042SBarry Smith   PetscInt       total_ct=baij->ht_total_ct,insert_ct=baij->ht_insert_ct;
5134a15367fSSatish Balay #endif
5140bdbc534SSatish Balay 
5150bdbc534SSatish Balay   PetscFunctionBegin;
5160bdbc534SSatish Balay 
5170bdbc534SSatish Balay   for (i=0; i<m; i++) {
5182515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
51929bbc08cSBarry Smith     if (im[i] < 0) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Negative row");
520899cda47SBarry Smith     if (im[i] >= mat->rmap.N) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],mat->rmap.N-1);
5210bdbc534SSatish Balay #endif
5220bdbc534SSatish Balay       row = im[i];
523c2760754SSatish Balay     if (row >= rstart_orig && row < rend_orig) {
5240bdbc534SSatish Balay       for (j=0; j<n; j++) {
5250bdbc534SSatish Balay         col = in[j];
5266fa18ffdSBarry Smith         if (roworiented) value = v[i*n+j]; else value = v[i+j*m];
527b24ad042SBarry Smith         /* Look up PetscInto the Hash Table */
528c2760754SSatish Balay         key = (row/bs)*Nbs+(col/bs)+1;
529c2760754SSatish Balay         h1  = HASH(size,key,tmp);
5300bdbc534SSatish Balay 
531c2760754SSatish Balay 
532c2760754SSatish Balay         idx = h1;
5332515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
534187ce0cbSSatish Balay         insert_ct++;
535187ce0cbSSatish Balay         total_ct++;
536187ce0cbSSatish Balay         if (HT[idx] != key) {
537187ce0cbSSatish Balay           for (idx=h1; (idx<size) && (HT[idx]!=key); idx++,total_ct++);
538187ce0cbSSatish Balay           if (idx == size) {
539187ce0cbSSatish Balay             for (idx=0; (idx<h1) && (HT[idx]!=key); idx++,total_ct++);
540187ce0cbSSatish Balay             if (idx == h1) {
54177431f27SBarry Smith               SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"(%D,%D) has no entry in the hash table", row, col);
542187ce0cbSSatish Balay             }
543187ce0cbSSatish Balay           }
544187ce0cbSSatish Balay         }
545187ce0cbSSatish Balay #else
546c2760754SSatish Balay         if (HT[idx] != key) {
547c2760754SSatish Balay           for (idx=h1; (idx<size) && (HT[idx]!=key); idx++);
548c2760754SSatish Balay           if (idx == size) {
549c2760754SSatish Balay             for (idx=0; (idx<h1) && (HT[idx]!=key); idx++);
550c2760754SSatish Balay             if (idx == h1) {
55177431f27SBarry Smith               SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"(%D,%D) has no entry in the hash table", row, col);
552c2760754SSatish Balay             }
553c2760754SSatish Balay           }
554c2760754SSatish Balay         }
555187ce0cbSSatish Balay #endif
556c2760754SSatish Balay         /* A HASH table entry is found, so insert the values at the correct address */
557c2760754SSatish Balay         if (addv == ADD_VALUES) *(HD[idx]+ (col % bs)*bs + (row % bs)) += value;
558c2760754SSatish Balay         else                    *(HD[idx]+ (col % bs)*bs + (row % bs))  = value;
5590bdbc534SSatish Balay       }
5600bdbc534SSatish Balay     } else {
5610bdbc534SSatish Balay       if (!baij->donotstash) {
562ff2fd236SBarry Smith         if (roworiented) {
5638798bf22SSatish Balay           ierr = MatStashValuesRow_Private(&mat->stash,im[i],n,in,v+i*n);CHKERRQ(ierr);
564ff2fd236SBarry Smith         } else {
5658798bf22SSatish Balay           ierr = MatStashValuesCol_Private(&mat->stash,im[i],n,in,v+i,m);CHKERRQ(ierr);
5660bdbc534SSatish Balay         }
5670bdbc534SSatish Balay       }
5680bdbc534SSatish Balay     }
5690bdbc534SSatish Balay   }
5702515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
571187ce0cbSSatish Balay   baij->ht_total_ct = total_ct;
572187ce0cbSSatish Balay   baij->ht_insert_ct = insert_ct;
573187ce0cbSSatish Balay #endif
5740bdbc534SSatish Balay   PetscFunctionReturn(0);
5750bdbc534SSatish Balay }
5760bdbc534SSatish Balay 
5774a2ae208SSatish Balay #undef __FUNCT__
5784a2ae208SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_MPIBAIJ_HT_MatScalar"
579b24ad042SBarry Smith PetscErrorCode MatSetValuesBlocked_MPIBAIJ_HT_MatScalar(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const MatScalar v[],InsertMode addv)
5800bdbc534SSatish Balay {
5810bdbc534SSatish Balay   Mat_MPIBAIJ     *baij = (Mat_MPIBAIJ*)mat->data;
582273d9f13SBarry Smith   PetscTruth      roworiented = baij->roworiented;
583dfbe8321SBarry Smith   PetscErrorCode  ierr;
584b24ad042SBarry Smith   PetscInt        i,j,ii,jj,row,col;
585899cda47SBarry Smith   PetscInt        rstart=baij->rstartbs;
586ab715e2cSSatish Balay   PetscInt        rend=mat->rmap.rend,stepval,bs=mat->rmap.bs,bs2=baij->bs2,nbs2=n*bs2;
587b24ad042SBarry Smith   PetscInt        h1,key,size=baij->ht_size,idx,*HT=baij->ht,Nbs=baij->Nbs;
588329f5518SBarry Smith   PetscReal       tmp;
5893eda8832SBarry Smith   MatScalar       **HD = baij->hd,*baij_a;
590f15d580aSBarry Smith   const MatScalar *v_t,*value;
5912515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
592b24ad042SBarry Smith   PetscInt        total_ct=baij->ht_total_ct,insert_ct=baij->ht_insert_ct;
5934a15367fSSatish Balay #endif
5940bdbc534SSatish Balay 
595d0a41580SSatish Balay   PetscFunctionBegin;
596d0a41580SSatish Balay 
5970bdbc534SSatish Balay   if (roworiented) {
5980bdbc534SSatish Balay     stepval = (n-1)*bs;
5990bdbc534SSatish Balay   } else {
6000bdbc534SSatish Balay     stepval = (m-1)*bs;
6010bdbc534SSatish Balay   }
6020bdbc534SSatish Balay   for (i=0; i<m; i++) {
6032515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
60477431f27SBarry Smith     if (im[i] < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %D",im[i]);
60577431f27SBarry Smith     if (im[i] >= baij->Mbs) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],baij->Mbs-1);
6060bdbc534SSatish Balay #endif
6070bdbc534SSatish Balay     row   = im[i];
608ab715e2cSSatish Balay     v_t   = v + i*nbs2;
609c2760754SSatish Balay     if (row >= rstart && row < rend) {
6100bdbc534SSatish Balay       for (j=0; j<n; j++) {
6110bdbc534SSatish Balay         col = in[j];
6120bdbc534SSatish Balay 
6130bdbc534SSatish Balay         /* Look up into the Hash Table */
614c2760754SSatish Balay         key = row*Nbs+col+1;
615c2760754SSatish Balay         h1  = HASH(size,key,tmp);
6160bdbc534SSatish Balay 
617c2760754SSatish Balay         idx = h1;
6182515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
619187ce0cbSSatish Balay         total_ct++;
620187ce0cbSSatish Balay         insert_ct++;
621187ce0cbSSatish Balay        if (HT[idx] != key) {
622187ce0cbSSatish Balay           for (idx=h1; (idx<size) && (HT[idx]!=key); idx++,total_ct++);
623187ce0cbSSatish Balay           if (idx == size) {
624187ce0cbSSatish Balay             for (idx=0; (idx<h1) && (HT[idx]!=key); idx++,total_ct++);
625187ce0cbSSatish Balay             if (idx == h1) {
62677431f27SBarry Smith               SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"(%D,%D) has no entry in the hash table", row, col);
627187ce0cbSSatish Balay             }
628187ce0cbSSatish Balay           }
629187ce0cbSSatish Balay         }
630187ce0cbSSatish Balay #else
631c2760754SSatish Balay         if (HT[idx] != key) {
632c2760754SSatish Balay           for (idx=h1; (idx<size) && (HT[idx]!=key); idx++);
633c2760754SSatish Balay           if (idx == size) {
634c2760754SSatish Balay             for (idx=0; (idx<h1) && (HT[idx]!=key); idx++);
635c2760754SSatish Balay             if (idx == h1) {
63677431f27SBarry Smith               SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"(%D,%D) has no entry in the hash table", row, col);
637c2760754SSatish Balay             }
638c2760754SSatish Balay           }
639c2760754SSatish Balay         }
640187ce0cbSSatish Balay #endif
641c2760754SSatish Balay         baij_a = HD[idx];
6420bdbc534SSatish Balay         if (roworiented) {
643c2760754SSatish Balay           /*value = v + i*(stepval+bs)*bs + j*bs;*/
644187ce0cbSSatish Balay           /* value = v + (i*(stepval+bs)+j)*bs; */
645187ce0cbSSatish Balay           value = v_t;
646187ce0cbSSatish Balay           v_t  += bs;
647fef45726SSatish Balay           if (addv == ADD_VALUES) {
648c2760754SSatish Balay             for (ii=0; ii<bs; ii++,value+=stepval) {
649c2760754SSatish Balay               for (jj=ii; jj<bs2; jj+=bs) {
650fef45726SSatish Balay                 baij_a[jj]  += *value++;
651b4cc0f5aSSatish Balay               }
652b4cc0f5aSSatish Balay             }
653fef45726SSatish Balay           } else {
654c2760754SSatish Balay             for (ii=0; ii<bs; ii++,value+=stepval) {
655c2760754SSatish Balay               for (jj=ii; jj<bs2; jj+=bs) {
656fef45726SSatish Balay                 baij_a[jj]  = *value++;
657fef45726SSatish Balay               }
658fef45726SSatish Balay             }
659fef45726SSatish Balay           }
6600bdbc534SSatish Balay         } else {
6610bdbc534SSatish Balay           value = v + j*(stepval+bs)*bs + i*bs;
662fef45726SSatish Balay           if (addv == ADD_VALUES) {
663b4cc0f5aSSatish Balay             for (ii=0; ii<bs; ii++,value+=stepval,baij_a+=bs) {
6640bdbc534SSatish Balay               for (jj=0; jj<bs; jj++) {
665fef45726SSatish Balay                 baij_a[jj]  += *value++;
666fef45726SSatish Balay               }
667fef45726SSatish Balay             }
668fef45726SSatish Balay           } else {
669fef45726SSatish Balay             for (ii=0; ii<bs; ii++,value+=stepval,baij_a+=bs) {
670fef45726SSatish Balay               for (jj=0; jj<bs; jj++) {
671fef45726SSatish Balay                 baij_a[jj]  = *value++;
672fef45726SSatish Balay               }
673b4cc0f5aSSatish Balay             }
6740bdbc534SSatish Balay           }
6750bdbc534SSatish Balay         }
6760bdbc534SSatish Balay       }
6770bdbc534SSatish Balay     } else {
6780bdbc534SSatish Balay       if (!baij->donotstash) {
6790bdbc534SSatish Balay         if (roworiented) {
6808798bf22SSatish Balay           ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
6810bdbc534SSatish Balay         } else {
6828798bf22SSatish Balay           ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
6830bdbc534SSatish Balay         }
6840bdbc534SSatish Balay       }
6850bdbc534SSatish Balay     }
6860bdbc534SSatish Balay   }
6872515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
688187ce0cbSSatish Balay   baij->ht_total_ct = total_ct;
689187ce0cbSSatish Balay   baij->ht_insert_ct = insert_ct;
690187ce0cbSSatish Balay #endif
6910bdbc534SSatish Balay   PetscFunctionReturn(0);
6920bdbc534SSatish Balay }
693133cdb44SSatish Balay 
6944a2ae208SSatish Balay #undef __FUNCT__
6954a2ae208SSatish Balay #define __FUNCT__ "MatGetValues_MPIBAIJ"
696b24ad042SBarry Smith PetscErrorCode MatGetValues_MPIBAIJ(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[])
697d6de1c52SSatish Balay {
698d6de1c52SSatish Balay   Mat_MPIBAIJ    *baij = (Mat_MPIBAIJ*)mat->data;
6996849ba73SBarry Smith   PetscErrorCode ierr;
700899cda47SBarry Smith   PetscInt       bs=mat->rmap.bs,i,j,bsrstart = mat->rmap.rstart,bsrend = mat->rmap.rend;
701899cda47SBarry Smith   PetscInt       bscstart = mat->cmap.rstart,bscend = mat->cmap.rend,row,col,data;
702d6de1c52SSatish Balay 
703133cdb44SSatish Balay   PetscFunctionBegin;
704d6de1c52SSatish Balay   for (i=0; i<m; i++) {
705*97e567efSBarry Smith     if (idxm[i] < 0) continue; /* SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %D",idxm[i]);*/
706899cda47SBarry Smith     if (idxm[i] >= mat->rmap.N) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",idxm[i],mat->rmap.N-1);
707d6de1c52SSatish Balay     if (idxm[i] >= bsrstart && idxm[i] < bsrend) {
708d6de1c52SSatish Balay       row = idxm[i] - bsrstart;
709d6de1c52SSatish Balay       for (j=0; j<n; j++) {
710*97e567efSBarry Smith         if (idxn[j] < 0) continue; /* SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Negative column: %D",idxn[j]); */
711899cda47SBarry Smith         if (idxn[j] >= mat->cmap.N) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",idxn[j],mat->cmap.N-1);
712d6de1c52SSatish Balay         if (idxn[j] >= bscstart && idxn[j] < bscend){
713d6de1c52SSatish Balay           col = idxn[j] - bscstart;
71498dd23e9SBarry Smith           ierr = MatGetValues_SeqBAIJ(baij->A,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr);
715d64ed03dSBarry Smith         } else {
716905e6a2fSBarry Smith           if (!baij->colmap) {
717905e6a2fSBarry Smith             ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
718905e6a2fSBarry Smith           }
719aa482453SBarry Smith #if defined (PETSC_USE_CTABLE)
7200f5bd95cSBarry Smith           ierr = PetscTableFind(baij->colmap,idxn[j]/bs+1,&data);CHKERRQ(ierr);
721fa46199cSSatish Balay           data --;
72248e59246SSatish Balay #else
72348e59246SSatish Balay           data = baij->colmap[idxn[j]/bs]-1;
72448e59246SSatish Balay #endif
72548e59246SSatish Balay           if((data < 0) || (baij->garray[data/bs] != idxn[j]/bs)) *(v+i*n+j) = 0.0;
726d9d09a02SSatish Balay           else {
72748e59246SSatish Balay             col  = data + idxn[j]%bs;
72898dd23e9SBarry Smith             ierr = MatGetValues_SeqBAIJ(baij->B,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr);
729d6de1c52SSatish Balay           }
730d6de1c52SSatish Balay         }
731d6de1c52SSatish Balay       }
732d64ed03dSBarry Smith     } else {
73329bbc08cSBarry Smith       SETERRQ(PETSC_ERR_SUP,"Only local values currently supported");
734d6de1c52SSatish Balay     }
735d6de1c52SSatish Balay   }
7363a40ed3dSBarry Smith  PetscFunctionReturn(0);
737d6de1c52SSatish Balay }
738d6de1c52SSatish Balay 
7394a2ae208SSatish Balay #undef __FUNCT__
7404a2ae208SSatish Balay #define __FUNCT__ "MatNorm_MPIBAIJ"
741dfbe8321SBarry Smith PetscErrorCode MatNorm_MPIBAIJ(Mat mat,NormType type,PetscReal *nrm)
742d6de1c52SSatish Balay {
743d6de1c52SSatish Balay   Mat_MPIBAIJ    *baij = (Mat_MPIBAIJ*)mat->data;
744d6de1c52SSatish Balay   Mat_SeqBAIJ    *amat = (Mat_SeqBAIJ*)baij->A->data,*bmat = (Mat_SeqBAIJ*)baij->B->data;
745dfbe8321SBarry Smith   PetscErrorCode ierr;
746899cda47SBarry Smith   PetscInt       i,j,bs2=baij->bs2,bs=baij->A->rmap.bs,nz,row,col;
747329f5518SBarry Smith   PetscReal      sum = 0.0;
7483eda8832SBarry Smith   MatScalar      *v;
749d6de1c52SSatish Balay 
750d64ed03dSBarry Smith   PetscFunctionBegin;
751d6de1c52SSatish Balay   if (baij->size == 1) {
752064f8208SBarry Smith     ierr =  MatNorm(baij->A,type,nrm);CHKERRQ(ierr);
753d6de1c52SSatish Balay   } else {
754d6de1c52SSatish Balay     if (type == NORM_FROBENIUS) {
755d6de1c52SSatish Balay       v = amat->a;
7568a62d963SHong Zhang       nz = amat->nz*bs2;
7578a62d963SHong Zhang       for (i=0; i<nz; i++) {
758aa482453SBarry Smith #if defined(PETSC_USE_COMPLEX)
759329f5518SBarry Smith         sum += PetscRealPart(PetscConj(*v)*(*v)); v++;
760d6de1c52SSatish Balay #else
761d6de1c52SSatish Balay         sum += (*v)*(*v); v++;
762d6de1c52SSatish Balay #endif
763d6de1c52SSatish Balay       }
764d6de1c52SSatish Balay       v = bmat->a;
7658a62d963SHong Zhang       nz = bmat->nz*bs2;
7668a62d963SHong Zhang       for (i=0; i<nz; i++) {
767aa482453SBarry Smith #if defined(PETSC_USE_COMPLEX)
768329f5518SBarry Smith         sum += PetscRealPart(PetscConj(*v)*(*v)); v++;
769d6de1c52SSatish Balay #else
770d6de1c52SSatish Balay         sum += (*v)*(*v); v++;
771d6de1c52SSatish Balay #endif
772d6de1c52SSatish Balay       }
773064f8208SBarry Smith       ierr = MPI_Allreduce(&sum,nrm,1,MPIU_REAL,MPI_SUM,mat->comm);CHKERRQ(ierr);
774064f8208SBarry Smith       *nrm = sqrt(*nrm);
7758a62d963SHong Zhang     } else if (type == NORM_1) { /* max column sum */
7768a62d963SHong Zhang       PetscReal *tmp,*tmp2;
777899cda47SBarry Smith       PetscInt  *jj,*garray=baij->garray,cstart=baij->rstartbs;
778899cda47SBarry Smith       ierr = PetscMalloc((2*mat->cmap.N+1)*sizeof(PetscReal),&tmp);CHKERRQ(ierr);
779899cda47SBarry Smith       tmp2 = tmp + mat->cmap.N;
780899cda47SBarry Smith       ierr = PetscMemzero(tmp,mat->cmap.N*sizeof(PetscReal));CHKERRQ(ierr);
7818a62d963SHong Zhang       v = amat->a; jj = amat->j;
7828a62d963SHong Zhang       for (i=0; i<amat->nz; i++) {
7838a62d963SHong Zhang         for (j=0; j<bs; j++){
7848a62d963SHong Zhang           col = bs*(cstart + *jj) + j; /* column index */
7858a62d963SHong Zhang           for (row=0; row<bs; row++){
7868a62d963SHong Zhang             tmp[col] += PetscAbsScalar(*v);  v++;
7878a62d963SHong Zhang           }
7888a62d963SHong Zhang         }
7898a62d963SHong Zhang         jj++;
7908a62d963SHong Zhang       }
7918a62d963SHong Zhang       v = bmat->a; jj = bmat->j;
7928a62d963SHong Zhang       for (i=0; i<bmat->nz; i++) {
7938a62d963SHong Zhang         for (j=0; j<bs; j++){
7948a62d963SHong Zhang           col = bs*garray[*jj] + j;
7958a62d963SHong Zhang           for (row=0; row<bs; row++){
7968a62d963SHong Zhang             tmp[col] += PetscAbsScalar(*v); v++;
7978a62d963SHong Zhang           }
7988a62d963SHong Zhang         }
7998a62d963SHong Zhang         jj++;
8008a62d963SHong Zhang       }
801899cda47SBarry Smith       ierr = MPI_Allreduce(tmp,tmp2,mat->cmap.N,MPIU_REAL,MPI_SUM,mat->comm);CHKERRQ(ierr);
8028a62d963SHong Zhang       *nrm = 0.0;
803899cda47SBarry Smith       for (j=0; j<mat->cmap.N; j++) {
8048a62d963SHong Zhang         if (tmp2[j] > *nrm) *nrm = tmp2[j];
8058a62d963SHong Zhang       }
8068a62d963SHong Zhang       ierr = PetscFree(tmp);CHKERRQ(ierr);
8078a62d963SHong Zhang     } else if (type == NORM_INFINITY) { /* max row sum */
808577dd1f9SKris Buschelman       PetscReal *sums;
809577dd1f9SKris Buschelman       ierr = PetscMalloc(bs*sizeof(PetscReal),&sums);CHKERRQ(ierr)
8108a62d963SHong Zhang       sum = 0.0;
8118a62d963SHong Zhang       for (j=0; j<amat->mbs; j++) {
8128a62d963SHong Zhang         for (row=0; row<bs; row++) sums[row] = 0.0;
8138a62d963SHong Zhang         v = amat->a + bs2*amat->i[j];
8148a62d963SHong Zhang         nz = amat->i[j+1]-amat->i[j];
8158a62d963SHong Zhang         for (i=0; i<nz; i++) {
8168a62d963SHong Zhang           for (col=0; col<bs; col++){
8178a62d963SHong Zhang             for (row=0; row<bs; row++){
8188a62d963SHong Zhang               sums[row] += PetscAbsScalar(*v); v++;
8198a62d963SHong Zhang             }
8208a62d963SHong Zhang           }
8218a62d963SHong Zhang         }
8228a62d963SHong Zhang         v = bmat->a + bs2*bmat->i[j];
8238a62d963SHong Zhang         nz = bmat->i[j+1]-bmat->i[j];
8248a62d963SHong Zhang         for (i=0; i<nz; i++) {
8258a62d963SHong Zhang           for (col=0; col<bs; col++){
8268a62d963SHong Zhang             for (row=0; row<bs; row++){
8278a62d963SHong Zhang               sums[row] += PetscAbsScalar(*v); v++;
8288a62d963SHong Zhang             }
8298a62d963SHong Zhang           }
8308a62d963SHong Zhang         }
8318a62d963SHong Zhang         for (row=0; row<bs; row++){
8328a62d963SHong Zhang           if (sums[row] > sum) sum = sums[row];
8338a62d963SHong Zhang         }
8348a62d963SHong Zhang       }
8358a62d963SHong Zhang       ierr = MPI_Allreduce(&sum,nrm,1,MPIU_REAL,MPI_MAX,mat->comm);CHKERRQ(ierr);
836577dd1f9SKris Buschelman       ierr = PetscFree(sums);CHKERRQ(ierr);
837d64ed03dSBarry Smith     } else {
83829bbc08cSBarry Smith       SETERRQ(PETSC_ERR_SUP,"No support for this norm yet");
839d6de1c52SSatish Balay     }
840d64ed03dSBarry Smith   }
8413a40ed3dSBarry Smith   PetscFunctionReturn(0);
842d6de1c52SSatish Balay }
84357b952d6SSatish Balay 
844fef45726SSatish Balay /*
845fef45726SSatish Balay   Creates the hash table, and sets the table
846fef45726SSatish Balay   This table is created only once.
847fef45726SSatish Balay   If new entried need to be added to the matrix
848fef45726SSatish Balay   then the hash table has to be destroyed and
849fef45726SSatish Balay   recreated.
850fef45726SSatish Balay */
8514a2ae208SSatish Balay #undef __FUNCT__
8524a2ae208SSatish Balay #define __FUNCT__ "MatCreateHashTable_MPIBAIJ_Private"
853dfbe8321SBarry Smith PetscErrorCode MatCreateHashTable_MPIBAIJ_Private(Mat mat,PetscReal factor)
854596b8d2eSBarry Smith {
855596b8d2eSBarry Smith   Mat_MPIBAIJ    *baij = (Mat_MPIBAIJ*)mat->data;
856596b8d2eSBarry Smith   Mat            A = baij->A,B=baij->B;
857596b8d2eSBarry Smith   Mat_SeqBAIJ    *a=(Mat_SeqBAIJ *)A->data,*b=(Mat_SeqBAIJ *)B->data;
858b24ad042SBarry Smith   PetscInt       i,j,k,nz=a->nz+b->nz,h1,*ai=a->i,*aj=a->j,*bi=b->i,*bj=b->j;
8596849ba73SBarry Smith   PetscErrorCode ierr;
860899cda47SBarry Smith   PetscInt       size,bs2=baij->bs2,rstart=baij->rstartbs;
861899cda47SBarry Smith   PetscInt       cstart=baij->cstartbs,*garray=baij->garray,row,col,Nbs=baij->Nbs;
862b24ad042SBarry Smith   PetscInt       *HT,key;
8633eda8832SBarry Smith   MatScalar      **HD;
864329f5518SBarry Smith   PetscReal      tmp;
8656cf91177SBarry Smith #if defined(PETSC_USE_INFO)
866b24ad042SBarry Smith   PetscInt       ct=0,max=0;
8674a15367fSSatish Balay #endif
868fef45726SSatish Balay 
869d64ed03dSBarry Smith   PetscFunctionBegin;
870b24ad042SBarry Smith   baij->ht_size=(PetscInt)(factor*nz);
8710bdbc534SSatish Balay   size = baij->ht_size;
872fef45726SSatish Balay 
8730bdbc534SSatish Balay   if (baij->ht) {
8740bdbc534SSatish Balay     PetscFunctionReturn(0);
875596b8d2eSBarry Smith   }
8760bdbc534SSatish Balay 
877fef45726SSatish Balay   /* Allocate Memory for Hash Table */
878b24ad042SBarry Smith   ierr     = PetscMalloc((size)*(sizeof(PetscInt)+sizeof(MatScalar*))+1,&baij->hd);CHKERRQ(ierr);
879b24ad042SBarry Smith   baij->ht = (PetscInt*)(baij->hd + size);
880b9e4cc15SSatish Balay   HD       = baij->hd;
881a07cd24cSSatish Balay   HT       = baij->ht;
882b9e4cc15SSatish Balay 
883b9e4cc15SSatish Balay 
884b24ad042SBarry Smith   ierr = PetscMemzero(HD,size*(sizeof(PetscInt)+sizeof(PetscScalar*)));CHKERRQ(ierr);
8850bdbc534SSatish Balay 
886596b8d2eSBarry Smith 
887596b8d2eSBarry Smith   /* Loop Over A */
8880bdbc534SSatish Balay   for (i=0; i<a->mbs; i++) {
889596b8d2eSBarry Smith     for (j=ai[i]; j<ai[i+1]; j++) {
8900bdbc534SSatish Balay       row = i+rstart;
8910bdbc534SSatish Balay       col = aj[j]+cstart;
892596b8d2eSBarry Smith 
893187ce0cbSSatish Balay       key = row*Nbs + col + 1;
894c2760754SSatish Balay       h1  = HASH(size,key,tmp);
8950bdbc534SSatish Balay       for (k=0; k<size; k++){
896958c9bccSBarry Smith         if (!HT[(h1+k)%size]) {
8970bdbc534SSatish Balay           HT[(h1+k)%size] = key;
8980bdbc534SSatish Balay           HD[(h1+k)%size] = a->a + j*bs2;
899596b8d2eSBarry Smith           break;
9006cf91177SBarry Smith #if defined(PETSC_USE_INFO)
901187ce0cbSSatish Balay         } else {
902187ce0cbSSatish Balay           ct++;
903187ce0cbSSatish Balay #endif
904596b8d2eSBarry Smith         }
905187ce0cbSSatish Balay       }
9066cf91177SBarry Smith #if defined(PETSC_USE_INFO)
907187ce0cbSSatish Balay       if (k> max) max = k;
908187ce0cbSSatish Balay #endif
909596b8d2eSBarry Smith     }
910596b8d2eSBarry Smith   }
911596b8d2eSBarry Smith   /* Loop Over B */
9120bdbc534SSatish Balay   for (i=0; i<b->mbs; i++) {
913596b8d2eSBarry Smith     for (j=bi[i]; j<bi[i+1]; j++) {
9140bdbc534SSatish Balay       row = i+rstart;
9150bdbc534SSatish Balay       col = garray[bj[j]];
916187ce0cbSSatish Balay       key = row*Nbs + col + 1;
917c2760754SSatish Balay       h1  = HASH(size,key,tmp);
9180bdbc534SSatish Balay       for (k=0; k<size; k++){
919958c9bccSBarry Smith         if (!HT[(h1+k)%size]) {
9200bdbc534SSatish Balay           HT[(h1+k)%size] = key;
9210bdbc534SSatish Balay           HD[(h1+k)%size] = b->a + j*bs2;
922596b8d2eSBarry Smith           break;
9236cf91177SBarry Smith #if defined(PETSC_USE_INFO)
924187ce0cbSSatish Balay         } else {
925187ce0cbSSatish Balay           ct++;
926187ce0cbSSatish Balay #endif
927596b8d2eSBarry Smith         }
928187ce0cbSSatish Balay       }
9296cf91177SBarry Smith #if defined(PETSC_USE_INFO)
930187ce0cbSSatish Balay       if (k> max) max = k;
931187ce0cbSSatish Balay #endif
932596b8d2eSBarry Smith     }
933596b8d2eSBarry Smith   }
934596b8d2eSBarry Smith 
935596b8d2eSBarry Smith   /* Print Summary */
9366cf91177SBarry Smith #if defined(PETSC_USE_INFO)
937c38d4ed2SBarry Smith   for (i=0,j=0; i<size; i++) {
938596b8d2eSBarry Smith     if (HT[i]) {j++;}
939c38d4ed2SBarry Smith   }
940ae15b995SBarry Smith   ierr = PetscInfo2(0,"Average Search = %5.2f,max search = %D\n",(!j)? 0.0:((PetscReal)(ct+j))/j,max);CHKERRQ(ierr);
941187ce0cbSSatish Balay #endif
9423a40ed3dSBarry Smith   PetscFunctionReturn(0);
943596b8d2eSBarry Smith }
94457b952d6SSatish Balay 
9454a2ae208SSatish Balay #undef __FUNCT__
9464a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyBegin_MPIBAIJ"
947dfbe8321SBarry Smith PetscErrorCode MatAssemblyBegin_MPIBAIJ(Mat mat,MatAssemblyType mode)
948bbb85fb3SSatish Balay {
949bbb85fb3SSatish Balay   Mat_MPIBAIJ    *baij = (Mat_MPIBAIJ*)mat->data;
950dfbe8321SBarry Smith   PetscErrorCode ierr;
951b24ad042SBarry Smith   PetscInt       nstash,reallocs;
952bbb85fb3SSatish Balay   InsertMode     addv;
953bbb85fb3SSatish Balay 
954bbb85fb3SSatish Balay   PetscFunctionBegin;
955bbb85fb3SSatish Balay   if (baij->donotstash) {
956bbb85fb3SSatish Balay     PetscFunctionReturn(0);
957bbb85fb3SSatish Balay   }
958bbb85fb3SSatish Balay 
959bbb85fb3SSatish Balay   /* make sure all processors are either in INSERTMODE or ADDMODE */
960bbb85fb3SSatish Balay   ierr = MPI_Allreduce(&mat->insertmode,&addv,1,MPI_INT,MPI_BOR,mat->comm);CHKERRQ(ierr);
961bbb85fb3SSatish Balay   if (addv == (ADD_VALUES|INSERT_VALUES)) {
96229bbc08cSBarry Smith     SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Some processors inserted others added");
963bbb85fb3SSatish Balay   }
964bbb85fb3SSatish Balay   mat->insertmode = addv; /* in case this processor had no cache */
965bbb85fb3SSatish Balay 
966899cda47SBarry Smith   ierr = MatStashScatterBegin_Private(&mat->stash,mat->rmap.range);CHKERRQ(ierr);
967899cda47SBarry Smith   ierr = MatStashScatterBegin_Private(&mat->bstash,baij->rangebs);CHKERRQ(ierr);
9688798bf22SSatish Balay   ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr);
969ae15b995SBarry Smith   ierr = PetscInfo2(0,"Stash has %D entries,uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr);
97046680499SSatish Balay   ierr = MatStashGetInfo_Private(&mat->bstash,&nstash,&reallocs);CHKERRQ(ierr);
971ae15b995SBarry Smith   ierr = PetscInfo2(0,"Block-Stash has %D entries, uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr);
972bbb85fb3SSatish Balay   PetscFunctionReturn(0);
973bbb85fb3SSatish Balay }
974bbb85fb3SSatish Balay 
9754a2ae208SSatish Balay #undef __FUNCT__
9764a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyEnd_MPIBAIJ"
977dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_MPIBAIJ(Mat mat,MatAssemblyType mode)
978bbb85fb3SSatish Balay {
979bbb85fb3SSatish Balay   Mat_MPIBAIJ    *baij=(Mat_MPIBAIJ*)mat->data;
98091c97fd4SSatish Balay   Mat_SeqBAIJ    *a=(Mat_SeqBAIJ*)baij->A->data;
9816849ba73SBarry Smith   PetscErrorCode ierr;
982b24ad042SBarry Smith   PetscInt       i,j,rstart,ncols,flg,bs2=baij->bs2;
983b24ad042SBarry Smith   PetscInt       *row,*col,other_disassembled;
9847c922b88SBarry Smith   PetscTruth     r1,r2,r3;
9853eda8832SBarry Smith   MatScalar      *val;
986bbb85fb3SSatish Balay   InsertMode     addv = mat->insertmode;
987b24ad042SBarry Smith   PetscMPIInt    n;
988bbb85fb3SSatish Balay 
98991c97fd4SSatish Balay   /* do not use 'b=(Mat_SeqBAIJ*)baij->B->data' as B can be reset in disassembly */
990bbb85fb3SSatish Balay   PetscFunctionBegin;
991bbb85fb3SSatish Balay   if (!baij->donotstash) {
992a2d1c673SSatish Balay     while (1) {
9938798bf22SSatish Balay       ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr);
994a2d1c673SSatish Balay       if (!flg) break;
995a2d1c673SSatish Balay 
996bbb85fb3SSatish Balay       for (i=0; i<n;) {
997bbb85fb3SSatish Balay         /* Now identify the consecutive vals belonging to the same row */
998bbb85fb3SSatish Balay         for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; }
999bbb85fb3SSatish Balay         if (j < n) ncols = j-i;
1000bbb85fb3SSatish Balay         else       ncols = n-i;
1001bbb85fb3SSatish Balay         /* Now assemble all these values with a single function call */
100293fea6afSBarry Smith         ierr = MatSetValues_MPIBAIJ_MatScalar(mat,1,row+i,ncols,col+i,val+i,addv);CHKERRQ(ierr);
1003bbb85fb3SSatish Balay         i = j;
1004bbb85fb3SSatish Balay       }
1005bbb85fb3SSatish Balay     }
10068798bf22SSatish Balay     ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr);
1007a2d1c673SSatish Balay     /* Now process the block-stash. Since the values are stashed column-oriented,
1008a2d1c673SSatish Balay        set the roworiented flag to column oriented, and after MatSetValues()
1009a2d1c673SSatish Balay        restore the original flags */
1010a2d1c673SSatish Balay     r1 = baij->roworiented;
1011a2d1c673SSatish Balay     r2 = a->roworiented;
101291c97fd4SSatish Balay     r3 = ((Mat_SeqBAIJ*)baij->B->data)->roworiented;
10137c922b88SBarry Smith     baij->roworiented = PETSC_FALSE;
10147c922b88SBarry Smith     a->roworiented    = PETSC_FALSE;
101591c97fd4SSatish Balay     (((Mat_SeqBAIJ*)baij->B->data))->roworiented    = PETSC_FALSE; /* b->roworiented */
1016a2d1c673SSatish Balay     while (1) {
10178798bf22SSatish Balay       ierr = MatStashScatterGetMesg_Private(&mat->bstash,&n,&row,&col,&val,&flg);CHKERRQ(ierr);
1018a2d1c673SSatish Balay       if (!flg) break;
1019a2d1c673SSatish Balay 
1020a2d1c673SSatish Balay       for (i=0; i<n;) {
1021a2d1c673SSatish Balay         /* Now identify the consecutive vals belonging to the same row */
1022a2d1c673SSatish Balay         for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; }
1023a2d1c673SSatish Balay         if (j < n) ncols = j-i;
1024a2d1c673SSatish Balay         else       ncols = n-i;
102593fea6afSBarry Smith         ierr = MatSetValuesBlocked_MPIBAIJ_MatScalar(mat,1,row+i,ncols,col+i,val+i*bs2,addv);CHKERRQ(ierr);
1026a2d1c673SSatish Balay         i = j;
1027a2d1c673SSatish Balay       }
1028a2d1c673SSatish Balay     }
10298798bf22SSatish Balay     ierr = MatStashScatterEnd_Private(&mat->bstash);CHKERRQ(ierr);
1030a2d1c673SSatish Balay     baij->roworiented = r1;
1031a2d1c673SSatish Balay     a->roworiented    = r2;
103291c97fd4SSatish Balay     ((Mat_SeqBAIJ*)baij->B->data)->roworiented    = r3; /* b->roworiented */
1033bbb85fb3SSatish Balay   }
1034bbb85fb3SSatish Balay 
1035bbb85fb3SSatish Balay   ierr = MatAssemblyBegin(baij->A,mode);CHKERRQ(ierr);
1036bbb85fb3SSatish Balay   ierr = MatAssemblyEnd(baij->A,mode);CHKERRQ(ierr);
1037bbb85fb3SSatish Balay 
1038bbb85fb3SSatish Balay   /* determine if any processor has disassembled, if so we must
1039bbb85fb3SSatish Balay      also disassemble ourselfs, in order that we may reassemble. */
1040bbb85fb3SSatish Balay   /*
1041bbb85fb3SSatish Balay      if nonzero structure of submatrix B cannot change then we know that
1042bbb85fb3SSatish Balay      no processor disassembled thus we can skip this stuff
1043bbb85fb3SSatish Balay   */
1044bbb85fb3SSatish Balay   if (!((Mat_SeqBAIJ*)baij->B->data)->nonew)  {
1045bbb85fb3SSatish Balay     ierr = MPI_Allreduce(&mat->was_assembled,&other_disassembled,1,MPI_INT,MPI_PROD,mat->comm);CHKERRQ(ierr);
1046bbb85fb3SSatish Balay     if (mat->was_assembled && !other_disassembled) {
1047bbb85fb3SSatish Balay       ierr = DisAssemble_MPIBAIJ(mat);CHKERRQ(ierr);
1048bbb85fb3SSatish Balay     }
1049bbb85fb3SSatish Balay   }
1050bbb85fb3SSatish Balay 
1051bbb85fb3SSatish Balay   if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) {
1052bbb85fb3SSatish Balay     ierr = MatSetUpMultiply_MPIBAIJ(mat);CHKERRQ(ierr);
1053bbb85fb3SSatish Balay   }
105491c97fd4SSatish Balay   ((Mat_SeqBAIJ*)baij->B->data)->compressedrow.use = PETSC_TRUE; /* b->compressedrow.use */
1055bbb85fb3SSatish Balay   ierr = MatAssemblyBegin(baij->B,mode);CHKERRQ(ierr);
1056bbb85fb3SSatish Balay   ierr = MatAssemblyEnd(baij->B,mode);CHKERRQ(ierr);
1057bbb85fb3SSatish Balay 
10586cf91177SBarry Smith #if defined(PETSC_USE_INFO)
1059bbb85fb3SSatish Balay   if (baij->ht && mode== MAT_FINAL_ASSEMBLY) {
1060ae15b995SBarry Smith     ierr = PetscInfo1(0,"Average Hash Table Search in MatSetValues = %5.2f\n",((PetscReal)baij->ht_total_ct)/baij->ht_insert_ct);CHKERRQ(ierr);
1061bbb85fb3SSatish Balay     baij->ht_total_ct  = 0;
1062bbb85fb3SSatish Balay     baij->ht_insert_ct = 0;
1063bbb85fb3SSatish Balay   }
1064bbb85fb3SSatish Balay #endif
1065bbb85fb3SSatish Balay   if (baij->ht_flag && !baij->ht && mode == MAT_FINAL_ASSEMBLY) {
1066bbb85fb3SSatish Balay     ierr = MatCreateHashTable_MPIBAIJ_Private(mat,baij->ht_fact);CHKERRQ(ierr);
1067bbb85fb3SSatish Balay     mat->ops->setvalues        = MatSetValues_MPIBAIJ_HT;
1068bbb85fb3SSatish Balay     mat->ops->setvaluesblocked = MatSetValuesBlocked_MPIBAIJ_HT;
1069bbb85fb3SSatish Balay   }
1070bbb85fb3SSatish Balay 
1071606d414cSSatish Balay   ierr = PetscFree(baij->rowvalues);CHKERRQ(ierr);
1072606d414cSSatish Balay   baij->rowvalues = 0;
1073bbb85fb3SSatish Balay   PetscFunctionReturn(0);
1074bbb85fb3SSatish Balay }
107557b952d6SSatish Balay 
10764a2ae208SSatish Balay #undef __FUNCT__
10774a2ae208SSatish Balay #define __FUNCT__ "MatView_MPIBAIJ_ASCIIorDraworSocket"
10786849ba73SBarry Smith static PetscErrorCode MatView_MPIBAIJ_ASCIIorDraworSocket(Mat mat,PetscViewer viewer)
107957b952d6SSatish Balay {
108057b952d6SSatish Balay   Mat_MPIBAIJ       *baij = (Mat_MPIBAIJ*)mat->data;
1081dfbe8321SBarry Smith   PetscErrorCode    ierr;
1082b24ad042SBarry Smith   PetscMPIInt       size = baij->size,rank = baij->rank;
1083899cda47SBarry Smith   PetscInt          bs = mat->rmap.bs;
108432077d6dSBarry Smith   PetscTruth        iascii,isdraw;
1085b0a32e0cSBarry Smith   PetscViewer       sviewer;
1086f3ef73ceSBarry Smith   PetscViewerFormat format;
108757b952d6SSatish Balay 
1088d64ed03dSBarry Smith   PetscFunctionBegin;
108932077d6dSBarry Smith   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&iascii);CHKERRQ(ierr);
1090fb9695e5SSatish Balay   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr);
109132077d6dSBarry Smith   if (iascii) {
1092b0a32e0cSBarry Smith     ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr);
1093456192e2SBarry Smith     if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) {
10944e220ebcSLois Curfman McInnes       MatInfo info;
1095d132466eSBarry Smith       ierr = MPI_Comm_rank(mat->comm,&rank);CHKERRQ(ierr);
1096d41123aaSBarry Smith       ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr);
109777431f27SBarry Smith       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Local rows %D nz %D nz alloced %D bs %D mem %D\n",
1098899cda47SBarry Smith               rank,mat->rmap.N,(PetscInt)info.nz_used*bs,(PetscInt)info.nz_allocated*bs,
1099899cda47SBarry Smith               mat->rmap.bs,(PetscInt)info.memory);CHKERRQ(ierr);
1100d132466eSBarry Smith       ierr = MatGetInfo(baij->A,MAT_LOCAL,&info);CHKERRQ(ierr);
110177431f27SBarry Smith       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] on-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used*bs);CHKERRQ(ierr);
1102d132466eSBarry Smith       ierr = MatGetInfo(baij->B,MAT_LOCAL,&info);CHKERRQ(ierr);
110377431f27SBarry Smith       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] off-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used*bs);CHKERRQ(ierr);
1104b0a32e0cSBarry Smith       ierr = PetscViewerFlush(viewer);CHKERRQ(ierr);
110507d81ca4SBarry Smith       ierr = PetscViewerASCIIPrintf(viewer,"Information on VecScatter used in matrix-vector product: \n");CHKERRQ(ierr);
110657b952d6SSatish Balay       ierr = VecScatterView(baij->Mvctx,viewer);CHKERRQ(ierr);
11073a40ed3dSBarry Smith       PetscFunctionReturn(0);
1108fb9695e5SSatish Balay     } else if (format == PETSC_VIEWER_ASCII_INFO) {
110977431f27SBarry Smith       ierr = PetscViewerASCIIPrintf(viewer,"  block size is %D\n",bs);CHKERRQ(ierr);
11103a40ed3dSBarry Smith       PetscFunctionReturn(0);
111104929863SHong Zhang     } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) {
111204929863SHong Zhang       PetscFunctionReturn(0);
111357b952d6SSatish Balay     }
111457b952d6SSatish Balay   }
111557b952d6SSatish Balay 
11160f5bd95cSBarry Smith   if (isdraw) {
1117b0a32e0cSBarry Smith     PetscDraw       draw;
111857b952d6SSatish Balay     PetscTruth isnull;
1119b0a32e0cSBarry Smith     ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr);
1120b0a32e0cSBarry Smith     ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); if (isnull) PetscFunctionReturn(0);
112157b952d6SSatish Balay   }
112257b952d6SSatish Balay 
112357b952d6SSatish Balay   if (size == 1) {
1124873048abSBarry Smith     ierr = PetscObjectSetName((PetscObject)baij->A,mat->name);CHKERRQ(ierr);
112557b952d6SSatish Balay     ierr = MatView(baij->A,viewer);CHKERRQ(ierr);
1126d64ed03dSBarry Smith   } else {
112757b952d6SSatish Balay     /* assemble the entire matrix onto first processor. */
112857b952d6SSatish Balay     Mat         A;
112957b952d6SSatish Balay     Mat_SeqBAIJ *Aloc;
1130899cda47SBarry Smith     PetscInt    M = mat->rmap.N,N = mat->cmap.N,*ai,*aj,col,i,j,k,*rvals,mbs = baij->mbs;
11313eda8832SBarry Smith     MatScalar   *a;
113257b952d6SSatish Balay 
1133f204ca49SKris Buschelman     /* Here we are creating a temporary matrix, so will assume MPIBAIJ is acceptable */
1134f204ca49SKris Buschelman     /* Perhaps this should be the type of mat? */
1135f69a0ea3SMatthew Knepley     ierr = MatCreate(mat->comm,&A);CHKERRQ(ierr);
113657b952d6SSatish Balay     if (!rank) {
1137f69a0ea3SMatthew Knepley       ierr = MatSetSizes(A,M,N,M,N);CHKERRQ(ierr);
1138d64ed03dSBarry Smith     } else {
1139f69a0ea3SMatthew Knepley       ierr = MatSetSizes(A,0,0,M,N);CHKERRQ(ierr);
114057b952d6SSatish Balay     }
1141f204ca49SKris Buschelman     ierr = MatSetType(A,MATMPIBAIJ);CHKERRQ(ierr);
1142899cda47SBarry Smith     ierr = MatMPIBAIJSetPreallocation(A,mat->rmap.bs,0,PETSC_NULL,0,PETSC_NULL);CHKERRQ(ierr);
114352e6d16bSBarry Smith     ierr = PetscLogObjectParent(mat,A);CHKERRQ(ierr);
114457b952d6SSatish Balay 
114557b952d6SSatish Balay     /* copy over the A part */
114657b952d6SSatish Balay     Aloc = (Mat_SeqBAIJ*)baij->A->data;
114757b952d6SSatish Balay     ai   = Aloc->i; aj = Aloc->j; a = Aloc->a;
1148b24ad042SBarry Smith     ierr = PetscMalloc(bs*sizeof(PetscInt),&rvals);CHKERRQ(ierr);
114957b952d6SSatish Balay 
115057b952d6SSatish Balay     for (i=0; i<mbs; i++) {
1151899cda47SBarry Smith       rvals[0] = bs*(baij->rstartbs + i);
115257b952d6SSatish Balay       for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; }
115357b952d6SSatish Balay       for (j=ai[i]; j<ai[i+1]; j++) {
1154899cda47SBarry Smith         col = (baij->cstartbs+aj[j])*bs;
115557b952d6SSatish Balay         for (k=0; k<bs; k++) {
115693fea6afSBarry Smith           ierr = MatSetValues_MPIBAIJ_MatScalar(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr);
1157cee3aa6bSSatish Balay           col++; a += bs;
115857b952d6SSatish Balay         }
115957b952d6SSatish Balay       }
116057b952d6SSatish Balay     }
116157b952d6SSatish Balay     /* copy over the B part */
116257b952d6SSatish Balay     Aloc = (Mat_SeqBAIJ*)baij->B->data;
116357b952d6SSatish Balay     ai = Aloc->i; aj = Aloc->j; a = Aloc->a;
116457b952d6SSatish Balay     for (i=0; i<mbs; i++) {
1165899cda47SBarry Smith       rvals[0] = bs*(baij->rstartbs + i);
116657b952d6SSatish Balay       for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; }
116757b952d6SSatish Balay       for (j=ai[i]; j<ai[i+1]; j++) {
116857b952d6SSatish Balay         col = baij->garray[aj[j]]*bs;
116957b952d6SSatish Balay         for (k=0; k<bs; k++) {
117093fea6afSBarry Smith           ierr = MatSetValues_MPIBAIJ_MatScalar(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr);
1171cee3aa6bSSatish Balay           col++; a += bs;
117257b952d6SSatish Balay         }
117357b952d6SSatish Balay       }
117457b952d6SSatish Balay     }
1175606d414cSSatish Balay     ierr = PetscFree(rvals);CHKERRQ(ierr);
11766d4a8577SBarry Smith     ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
11776d4a8577SBarry Smith     ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
117855843e3eSBarry Smith     /*
117955843e3eSBarry Smith        Everyone has to call to draw the matrix since the graphics waits are
1180b0a32e0cSBarry Smith        synchronized across all processors that share the PetscDraw object
118155843e3eSBarry Smith     */
1182b0a32e0cSBarry Smith     ierr = PetscViewerGetSingleton(viewer,&sviewer);CHKERRQ(ierr);
1183f14a1c24SBarry Smith     if (!rank) {
1184e36acaf3SBarry Smith       ierr = PetscObjectSetName((PetscObject)((Mat_MPIBAIJ*)(A->data))->A,mat->name);CHKERRQ(ierr);
11856831982aSBarry Smith       ierr = MatView(((Mat_MPIBAIJ*)(A->data))->A,sviewer);CHKERRQ(ierr);
118657b952d6SSatish Balay     }
1187b0a32e0cSBarry Smith     ierr = PetscViewerRestoreSingleton(viewer,&sviewer);CHKERRQ(ierr);
118857b952d6SSatish Balay     ierr = MatDestroy(A);CHKERRQ(ierr);
118957b952d6SSatish Balay   }
11903a40ed3dSBarry Smith   PetscFunctionReturn(0);
119157b952d6SSatish Balay }
119257b952d6SSatish Balay 
11934a2ae208SSatish Balay #undef __FUNCT__
11944a2ae208SSatish Balay #define __FUNCT__ "MatView_MPIBAIJ"
1195dfbe8321SBarry Smith PetscErrorCode MatView_MPIBAIJ(Mat mat,PetscViewer viewer)
119657b952d6SSatish Balay {
1197dfbe8321SBarry Smith   PetscErrorCode ierr;
119832077d6dSBarry Smith   PetscTruth     iascii,isdraw,issocket,isbinary;
119957b952d6SSatish Balay 
1200d64ed03dSBarry Smith   PetscFunctionBegin;
120132077d6dSBarry Smith   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&iascii);CHKERRQ(ierr);
1202fb9695e5SSatish Balay   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr);
1203b0a32e0cSBarry Smith   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_SOCKET,&issocket);CHKERRQ(ierr);
1204fb9695e5SSatish Balay   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_BINARY,&isbinary);CHKERRQ(ierr);
120532077d6dSBarry Smith   if (iascii || isdraw || issocket || isbinary) {
12067b2a1423SBarry Smith     ierr = MatView_MPIBAIJ_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr);
12075cd90555SBarry Smith   } else {
120879a5c55eSBarry Smith     SETERRQ1(PETSC_ERR_SUP,"Viewer type %s not supported by MPIBAIJ matrices",((PetscObject)viewer)->type_name);
120957b952d6SSatish Balay   }
12103a40ed3dSBarry Smith   PetscFunctionReturn(0);
121157b952d6SSatish Balay }
121257b952d6SSatish Balay 
12134a2ae208SSatish Balay #undef __FUNCT__
12144a2ae208SSatish Balay #define __FUNCT__ "MatDestroy_MPIBAIJ"
1215dfbe8321SBarry Smith PetscErrorCode MatDestroy_MPIBAIJ(Mat mat)
121679bdfe76SSatish Balay {
121779bdfe76SSatish Balay   Mat_MPIBAIJ    *baij = (Mat_MPIBAIJ*)mat->data;
1218dfbe8321SBarry Smith   PetscErrorCode ierr;
121979bdfe76SSatish Balay 
1220d64ed03dSBarry Smith   PetscFunctionBegin;
1221aa482453SBarry Smith #if defined(PETSC_USE_LOG)
1222899cda47SBarry Smith   PetscLogObjectState((PetscObject)mat,"Rows=%D,Cols=%D",mat->rmap.N,mat->cmap.N);
122379bdfe76SSatish Balay #endif
12248798bf22SSatish Balay   ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr);
12258798bf22SSatish Balay   ierr = MatStashDestroy_Private(&mat->bstash);CHKERRQ(ierr);
122679bdfe76SSatish Balay   ierr = MatDestroy(baij->A);CHKERRQ(ierr);
122779bdfe76SSatish Balay   ierr = MatDestroy(baij->B);CHKERRQ(ierr);
1228aa482453SBarry Smith #if defined (PETSC_USE_CTABLE)
12299c666560SBarry Smith   if (baij->colmap) {ierr = PetscTableDestroy(baij->colmap);CHKERRQ(ierr);}
123048e59246SSatish Balay #else
123105b42c5fSBarry Smith   ierr = PetscFree(baij->colmap);CHKERRQ(ierr);
123248e59246SSatish Balay #endif
123305b42c5fSBarry Smith   ierr = PetscFree(baij->garray);CHKERRQ(ierr);
1234606d414cSSatish Balay   if (baij->lvec)   {ierr = VecDestroy(baij->lvec);CHKERRQ(ierr);}
1235606d414cSSatish Balay   if (baij->Mvctx)  {ierr = VecScatterDestroy(baij->Mvctx);CHKERRQ(ierr);}
123605b42c5fSBarry Smith   ierr = PetscFree(baij->rowvalues);CHKERRQ(ierr);
123705b42c5fSBarry Smith   ierr = PetscFree(baij->barray);CHKERRQ(ierr);
123805b42c5fSBarry Smith   ierr = PetscFree(baij->hd);CHKERRQ(ierr);
12396fa18ffdSBarry Smith #if defined(PETSC_USE_MAT_SINGLE)
124005b42c5fSBarry Smith   ierr = PetscFree(baij->setvaluescopy);CHKERRQ(ierr);
12416fa18ffdSBarry Smith #endif
1242899cda47SBarry Smith   ierr = PetscFree(baij->rangebs);CHKERRQ(ierr);
1243606d414cSSatish Balay   ierr = PetscFree(baij);CHKERRQ(ierr);
1244901853e0SKris Buschelman 
1245dbd8c25aSHong Zhang   ierr = PetscObjectChangeTypeName((PetscObject)mat,0);CHKERRQ(ierr);
1246901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatStoreValues_C","",PETSC_NULL);CHKERRQ(ierr);
1247901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatRetrieveValues_C","",PETSC_NULL);CHKERRQ(ierr);
1248901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatGetDiagonalBlock_C","",PETSC_NULL);CHKERRQ(ierr);
1249901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPIBAIJSetPreallocation_C","",PETSC_NULL);CHKERRQ(ierr);
1250aac34f13SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPIBAIJSetPreallocationCSR_C","",PETSC_NULL);CHKERRQ(ierr);
1251901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDiagonalScaleLocal_C","",PETSC_NULL);CHKERRQ(ierr);
1252901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatSetHashTableFactor_C","",PETSC_NULL);CHKERRQ(ierr);
12533a40ed3dSBarry Smith   PetscFunctionReturn(0);
125479bdfe76SSatish Balay }
125579bdfe76SSatish Balay 
12564a2ae208SSatish Balay #undef __FUNCT__
12574a2ae208SSatish Balay #define __FUNCT__ "MatMult_MPIBAIJ"
1258dfbe8321SBarry Smith PetscErrorCode MatMult_MPIBAIJ(Mat A,Vec xx,Vec yy)
1259cee3aa6bSSatish Balay {
1260cee3aa6bSSatish Balay   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)A->data;
1261dfbe8321SBarry Smith   PetscErrorCode ierr;
1262b24ad042SBarry Smith   PetscInt       nt;
1263cee3aa6bSSatish Balay 
1264d64ed03dSBarry Smith   PetscFunctionBegin;
1265e1311b90SBarry Smith   ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr);
1266899cda47SBarry Smith   if (nt != A->cmap.n) {
126729bbc08cSBarry Smith     SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx");
126847b4a8eaSLois Curfman McInnes   }
1269e1311b90SBarry Smith   ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr);
1270899cda47SBarry Smith   if (nt != A->rmap.n) {
127129bbc08cSBarry Smith     SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible parition of A and yy");
127247b4a8eaSLois Curfman McInnes   }
1273ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1274f830108cSBarry Smith   ierr = (*a->A->ops->mult)(a->A,xx,yy);CHKERRQ(ierr);
1275ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1276f830108cSBarry Smith   ierr = (*a->B->ops->multadd)(a->B,a->lvec,yy,yy);CHKERRQ(ierr);
12773a40ed3dSBarry Smith   PetscFunctionReturn(0);
1278cee3aa6bSSatish Balay }
1279cee3aa6bSSatish Balay 
12804a2ae208SSatish Balay #undef __FUNCT__
12814a2ae208SSatish Balay #define __FUNCT__ "MatMultAdd_MPIBAIJ"
1282dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPIBAIJ(Mat A,Vec xx,Vec yy,Vec zz)
1283cee3aa6bSSatish Balay {
1284cee3aa6bSSatish Balay   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)A->data;
1285dfbe8321SBarry Smith   PetscErrorCode ierr;
1286d64ed03dSBarry Smith 
1287d64ed03dSBarry Smith   PetscFunctionBegin;
1288ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1289f830108cSBarry Smith   ierr = (*a->A->ops->multadd)(a->A,xx,yy,zz);CHKERRQ(ierr);
1290ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1291f830108cSBarry Smith   ierr = (*a->B->ops->multadd)(a->B,a->lvec,zz,zz);CHKERRQ(ierr);
12923a40ed3dSBarry Smith   PetscFunctionReturn(0);
1293cee3aa6bSSatish Balay }
1294cee3aa6bSSatish Balay 
12954a2ae208SSatish Balay #undef __FUNCT__
12964a2ae208SSatish Balay #define __FUNCT__ "MatMultTranspose_MPIBAIJ"
1297dfbe8321SBarry Smith PetscErrorCode MatMultTranspose_MPIBAIJ(Mat A,Vec xx,Vec yy)
1298cee3aa6bSSatish Balay {
1299cee3aa6bSSatish Balay   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)A->data;
1300dfbe8321SBarry Smith   PetscErrorCode ierr;
1301a5ff213dSBarry Smith   PetscTruth     merged;
1302cee3aa6bSSatish Balay 
1303d64ed03dSBarry Smith   PetscFunctionBegin;
1304a5ff213dSBarry Smith   ierr = VecScatterGetMerged(a->Mvctx,&merged);CHKERRQ(ierr);
1305cee3aa6bSSatish Balay   /* do nondiagonal part */
13067c922b88SBarry Smith   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr);
1307a5ff213dSBarry Smith   if (!merged) {
1308cee3aa6bSSatish Balay     /* send it on its way */
1309ca9f406cSSatish Balay     ierr = VecScatterBegin(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
1310cee3aa6bSSatish Balay     /* do local part */
13117c922b88SBarry Smith     ierr = (*a->A->ops->multtranspose)(a->A,xx,yy);CHKERRQ(ierr);
1312cee3aa6bSSatish Balay     /* receive remote parts: note this assumes the values are not actually */
1313a5ff213dSBarry Smith     /* inserted in yy until the next line */
1314ca9f406cSSatish Balay     ierr = VecScatterEnd(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
1315a5ff213dSBarry Smith   } else {
1316a5ff213dSBarry Smith     /* do local part */
1317a5ff213dSBarry Smith     ierr = (*a->A->ops->multtranspose)(a->A,xx,yy);CHKERRQ(ierr);
1318a5ff213dSBarry Smith     /* send it on its way */
1319ca9f406cSSatish Balay     ierr = VecScatterBegin(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
1320a5ff213dSBarry Smith     /* values actually were received in the Begin() but we need to call this nop */
1321ca9f406cSSatish Balay     ierr = VecScatterEnd(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
1322a5ff213dSBarry Smith   }
13233a40ed3dSBarry Smith   PetscFunctionReturn(0);
1324cee3aa6bSSatish Balay }
1325cee3aa6bSSatish Balay 
13264a2ae208SSatish Balay #undef __FUNCT__
13274a2ae208SSatish Balay #define __FUNCT__ "MatMultTransposeAdd_MPIBAIJ"
1328dfbe8321SBarry Smith PetscErrorCode MatMultTransposeAdd_MPIBAIJ(Mat A,Vec xx,Vec yy,Vec zz)
1329cee3aa6bSSatish Balay {
1330cee3aa6bSSatish Balay   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)A->data;
1331dfbe8321SBarry Smith   PetscErrorCode ierr;
1332cee3aa6bSSatish Balay 
1333d64ed03dSBarry Smith   PetscFunctionBegin;
1334cee3aa6bSSatish Balay   /* do nondiagonal part */
13357c922b88SBarry Smith   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr);
1336cee3aa6bSSatish Balay   /* send it on its way */
1337ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
1338cee3aa6bSSatish Balay   /* do local part */
13397c922b88SBarry Smith   ierr = (*a->A->ops->multtransposeadd)(a->A,xx,yy,zz);CHKERRQ(ierr);
1340cee3aa6bSSatish Balay   /* receive remote parts: note this assumes the values are not actually */
1341cee3aa6bSSatish Balay   /* inserted in yy until the next line, which is true for my implementation*/
1342cee3aa6bSSatish Balay   /* but is not perhaps always true. */
1343ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
13443a40ed3dSBarry Smith   PetscFunctionReturn(0);
1345cee3aa6bSSatish Balay }
1346cee3aa6bSSatish Balay 
1347cee3aa6bSSatish Balay /*
1348cee3aa6bSSatish Balay   This only works correctly for square matrices where the subblock A->A is the
1349cee3aa6bSSatish Balay    diagonal block
1350cee3aa6bSSatish Balay */
13514a2ae208SSatish Balay #undef __FUNCT__
13524a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonal_MPIBAIJ"
1353dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_MPIBAIJ(Mat A,Vec v)
1354cee3aa6bSSatish Balay {
1355cee3aa6bSSatish Balay   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)A->data;
1356dfbe8321SBarry Smith   PetscErrorCode ierr;
1357d64ed03dSBarry Smith 
1358d64ed03dSBarry Smith   PetscFunctionBegin;
1359899cda47SBarry Smith   if (A->rmap.N != A->cmap.N) SETERRQ(PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block");
13603a40ed3dSBarry Smith   ierr = MatGetDiagonal(a->A,v);CHKERRQ(ierr);
13613a40ed3dSBarry Smith   PetscFunctionReturn(0);
1362cee3aa6bSSatish Balay }
1363cee3aa6bSSatish Balay 
13644a2ae208SSatish Balay #undef __FUNCT__
13654a2ae208SSatish Balay #define __FUNCT__ "MatScale_MPIBAIJ"
1366f4df32b1SMatthew Knepley PetscErrorCode MatScale_MPIBAIJ(Mat A,PetscScalar aa)
1367cee3aa6bSSatish Balay {
1368cee3aa6bSSatish Balay   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)A->data;
1369dfbe8321SBarry Smith   PetscErrorCode ierr;
1370d64ed03dSBarry Smith 
1371d64ed03dSBarry Smith   PetscFunctionBegin;
1372f4df32b1SMatthew Knepley   ierr = MatScale(a->A,aa);CHKERRQ(ierr);
1373f4df32b1SMatthew Knepley   ierr = MatScale(a->B,aa);CHKERRQ(ierr);
13743a40ed3dSBarry Smith   PetscFunctionReturn(0);
1375cee3aa6bSSatish Balay }
1376026e39d0SSatish Balay 
13774a2ae208SSatish Balay #undef __FUNCT__
13784a2ae208SSatish Balay #define __FUNCT__ "MatGetRow_MPIBAIJ"
1379b24ad042SBarry Smith PetscErrorCode MatGetRow_MPIBAIJ(Mat matin,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v)
1380acdf5bf4SSatish Balay {
1381acdf5bf4SSatish Balay   Mat_MPIBAIJ    *mat = (Mat_MPIBAIJ*)matin->data;
138287828ca2SBarry Smith   PetscScalar    *vworkA,*vworkB,**pvA,**pvB,*v_p;
13836849ba73SBarry Smith   PetscErrorCode ierr;
1384899cda47SBarry Smith   PetscInt       bs = matin->rmap.bs,bs2 = mat->bs2,i,*cworkA,*cworkB,**pcA,**pcB;
1385899cda47SBarry Smith   PetscInt       nztot,nzA,nzB,lrow,brstart = matin->rmap.rstart,brend = matin->rmap.rend;
1386899cda47SBarry Smith   PetscInt       *cmap,*idx_p,cstart = mat->cstartbs;
1387acdf5bf4SSatish Balay 
1388d64ed03dSBarry Smith   PetscFunctionBegin;
1389abc0a331SBarry Smith   if (mat->getrowactive) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Already active");
1390acdf5bf4SSatish Balay   mat->getrowactive = PETSC_TRUE;
1391acdf5bf4SSatish Balay 
1392acdf5bf4SSatish Balay   if (!mat->rowvalues && (idx || v)) {
1393acdf5bf4SSatish Balay     /*
1394acdf5bf4SSatish Balay         allocate enough space to hold information from the longest row.
1395acdf5bf4SSatish Balay     */
1396acdf5bf4SSatish Balay     Mat_SeqBAIJ *Aa = (Mat_SeqBAIJ*)mat->A->data,*Ba = (Mat_SeqBAIJ*)mat->B->data;
1397b24ad042SBarry Smith     PetscInt     max = 1,mbs = mat->mbs,tmp;
1398bd16c2feSSatish Balay     for (i=0; i<mbs; i++) {
1399acdf5bf4SSatish Balay       tmp = Aa->i[i+1] - Aa->i[i] + Ba->i[i+1] - Ba->i[i];
1400acdf5bf4SSatish Balay       if (max < tmp) { max = tmp; }
1401acdf5bf4SSatish Balay     }
1402b24ad042SBarry Smith     ierr = PetscMalloc(max*bs2*(sizeof(PetscInt)+sizeof(PetscScalar)),&mat->rowvalues);CHKERRQ(ierr);
1403b24ad042SBarry Smith     mat->rowindices = (PetscInt*)(mat->rowvalues + max*bs2);
1404acdf5bf4SSatish Balay   }
1405acdf5bf4SSatish Balay 
140629bbc08cSBarry Smith   if (row < brstart || row >= brend) SETERRQ(PETSC_ERR_SUP,"Only local rows")
1407d9d09a02SSatish Balay   lrow = row - brstart;
1408acdf5bf4SSatish Balay 
1409acdf5bf4SSatish Balay   pvA = &vworkA; pcA = &cworkA; pvB = &vworkB; pcB = &cworkB;
1410acdf5bf4SSatish Balay   if (!v)   {pvA = 0; pvB = 0;}
1411acdf5bf4SSatish Balay   if (!idx) {pcA = 0; if (!v) pcB = 0;}
1412f830108cSBarry Smith   ierr = (*mat->A->ops->getrow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr);
1413f830108cSBarry Smith   ierr = (*mat->B->ops->getrow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr);
1414acdf5bf4SSatish Balay   nztot = nzA + nzB;
1415acdf5bf4SSatish Balay 
1416acdf5bf4SSatish Balay   cmap  = mat->garray;
1417acdf5bf4SSatish Balay   if (v  || idx) {
1418acdf5bf4SSatish Balay     if (nztot) {
1419acdf5bf4SSatish Balay       /* Sort by increasing column numbers, assuming A and B already sorted */
1420b24ad042SBarry Smith       PetscInt imark = -1;
1421acdf5bf4SSatish Balay       if (v) {
1422acdf5bf4SSatish Balay         *v = v_p = mat->rowvalues;
1423acdf5bf4SSatish Balay         for (i=0; i<nzB; i++) {
1424d9d09a02SSatish Balay           if (cmap[cworkB[i]/bs] < cstart)   v_p[i] = vworkB[i];
1425acdf5bf4SSatish Balay           else break;
1426acdf5bf4SSatish Balay         }
1427acdf5bf4SSatish Balay         imark = i;
1428acdf5bf4SSatish Balay         for (i=0; i<nzA; i++)     v_p[imark+i] = vworkA[i];
1429acdf5bf4SSatish Balay         for (i=imark; i<nzB; i++) v_p[nzA+i]   = vworkB[i];
1430acdf5bf4SSatish Balay       }
1431acdf5bf4SSatish Balay       if (idx) {
1432acdf5bf4SSatish Balay         *idx = idx_p = mat->rowindices;
1433acdf5bf4SSatish Balay         if (imark > -1) {
1434acdf5bf4SSatish Balay           for (i=0; i<imark; i++) {
1435bd16c2feSSatish Balay             idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs;
1436acdf5bf4SSatish Balay           }
1437acdf5bf4SSatish Balay         } else {
1438acdf5bf4SSatish Balay           for (i=0; i<nzB; i++) {
1439d9d09a02SSatish Balay             if (cmap[cworkB[i]/bs] < cstart)
1440d9d09a02SSatish Balay               idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ;
1441acdf5bf4SSatish Balay             else break;
1442acdf5bf4SSatish Balay           }
1443acdf5bf4SSatish Balay           imark = i;
1444acdf5bf4SSatish Balay         }
1445d9d09a02SSatish Balay         for (i=0; i<nzA; i++)     idx_p[imark+i] = cstart*bs + cworkA[i];
1446d9d09a02SSatish Balay         for (i=imark; i<nzB; i++) idx_p[nzA+i]   = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ;
1447acdf5bf4SSatish Balay       }
1448d64ed03dSBarry Smith     } else {
1449d212a18eSSatish Balay       if (idx) *idx = 0;
1450d212a18eSSatish Balay       if (v)   *v   = 0;
1451d212a18eSSatish Balay     }
1452acdf5bf4SSatish Balay   }
1453acdf5bf4SSatish Balay   *nz = nztot;
1454f830108cSBarry Smith   ierr = (*mat->A->ops->restorerow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr);
1455f830108cSBarry Smith   ierr = (*mat->B->ops->restorerow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr);
14563a40ed3dSBarry Smith   PetscFunctionReturn(0);
1457acdf5bf4SSatish Balay }
1458acdf5bf4SSatish Balay 
14594a2ae208SSatish Balay #undef __FUNCT__
14604a2ae208SSatish Balay #define __FUNCT__ "MatRestoreRow_MPIBAIJ"
1461b24ad042SBarry Smith PetscErrorCode MatRestoreRow_MPIBAIJ(Mat mat,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v)
1462acdf5bf4SSatish Balay {
1463acdf5bf4SSatish Balay   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data;
1464d64ed03dSBarry Smith 
1465d64ed03dSBarry Smith   PetscFunctionBegin;
1466abc0a331SBarry Smith   if (!baij->getrowactive) {
146729bbc08cSBarry Smith     SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"MatGetRow not called");
1468acdf5bf4SSatish Balay   }
1469acdf5bf4SSatish Balay   baij->getrowactive = PETSC_FALSE;
14703a40ed3dSBarry Smith   PetscFunctionReturn(0);
1471acdf5bf4SSatish Balay }
1472acdf5bf4SSatish Balay 
14734a2ae208SSatish Balay #undef __FUNCT__
14744a2ae208SSatish Balay #define __FUNCT__ "MatZeroEntries_MPIBAIJ"
1475dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_MPIBAIJ(Mat A)
147658667388SSatish Balay {
147758667388SSatish Balay   Mat_MPIBAIJ    *l = (Mat_MPIBAIJ*)A->data;
1478dfbe8321SBarry Smith   PetscErrorCode ierr;
1479d64ed03dSBarry Smith 
1480d64ed03dSBarry Smith   PetscFunctionBegin;
148158667388SSatish Balay   ierr = MatZeroEntries(l->A);CHKERRQ(ierr);
148258667388SSatish Balay   ierr = MatZeroEntries(l->B);CHKERRQ(ierr);
14833a40ed3dSBarry Smith   PetscFunctionReturn(0);
148458667388SSatish Balay }
14850ac07820SSatish Balay 
14864a2ae208SSatish Balay #undef __FUNCT__
14874a2ae208SSatish Balay #define __FUNCT__ "MatGetInfo_MPIBAIJ"
1488dfbe8321SBarry Smith PetscErrorCode MatGetInfo_MPIBAIJ(Mat matin,MatInfoType flag,MatInfo *info)
14890ac07820SSatish Balay {
14904e220ebcSLois Curfman McInnes   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)matin->data;
14914e220ebcSLois Curfman McInnes   Mat            A = a->A,B = a->B;
1492dfbe8321SBarry Smith   PetscErrorCode ierr;
1493329f5518SBarry Smith   PetscReal      isend[5],irecv[5];
14940ac07820SSatish Balay 
1495d64ed03dSBarry Smith   PetscFunctionBegin;
1496899cda47SBarry Smith   info->block_size     = (PetscReal)matin->rmap.bs;
14974e220ebcSLois Curfman McInnes   ierr = MatGetInfo(A,MAT_LOCAL,info);CHKERRQ(ierr);
14980e4b21beSBarry Smith   isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded;
1499de87f314SBarry Smith   isend[3] = info->memory;  isend[4] = info->mallocs;
15004e220ebcSLois Curfman McInnes   ierr = MatGetInfo(B,MAT_LOCAL,info);CHKERRQ(ierr);
15010e4b21beSBarry Smith   isend[0] += info->nz_used; isend[1] += info->nz_allocated; isend[2] += info->nz_unneeded;
1502de87f314SBarry Smith   isend[3] += info->memory;  isend[4] += info->mallocs;
15030ac07820SSatish Balay   if (flag == MAT_LOCAL) {
15044e220ebcSLois Curfman McInnes     info->nz_used      = isend[0];
15054e220ebcSLois Curfman McInnes     info->nz_allocated = isend[1];
15064e220ebcSLois Curfman McInnes     info->nz_unneeded  = isend[2];
15074e220ebcSLois Curfman McInnes     info->memory       = isend[3];
15084e220ebcSLois Curfman McInnes     info->mallocs      = isend[4];
15090ac07820SSatish Balay   } else if (flag == MAT_GLOBAL_MAX) {
1510d7d1e502SBarry Smith     ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_MAX,matin->comm);CHKERRQ(ierr);
15114e220ebcSLois Curfman McInnes     info->nz_used      = irecv[0];
15124e220ebcSLois Curfman McInnes     info->nz_allocated = irecv[1];
15134e220ebcSLois Curfman McInnes     info->nz_unneeded  = irecv[2];
15144e220ebcSLois Curfman McInnes     info->memory       = irecv[3];
15154e220ebcSLois Curfman McInnes     info->mallocs      = irecv[4];
15160ac07820SSatish Balay   } else if (flag == MAT_GLOBAL_SUM) {
1517d7d1e502SBarry Smith     ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_SUM,matin->comm);CHKERRQ(ierr);
15184e220ebcSLois Curfman McInnes     info->nz_used      = irecv[0];
15194e220ebcSLois Curfman McInnes     info->nz_allocated = irecv[1];
15204e220ebcSLois Curfman McInnes     info->nz_unneeded  = irecv[2];
15214e220ebcSLois Curfman McInnes     info->memory       = irecv[3];
15224e220ebcSLois Curfman McInnes     info->mallocs      = irecv[4];
1523d41123aaSBarry Smith   } else {
152477431f27SBarry Smith     SETERRQ1(PETSC_ERR_ARG_WRONG,"Unknown MatInfoType argument %d",(int)flag);
15250ac07820SSatish Balay   }
1526899cda47SBarry Smith   info->rows_global       = (PetscReal)A->rmap.N;
1527899cda47SBarry Smith   info->columns_global    = (PetscReal)A->cmap.N;
1528899cda47SBarry Smith   info->rows_local        = (PetscReal)A->rmap.N;
1529899cda47SBarry Smith   info->columns_local     = (PetscReal)A->cmap.N;
15304e220ebcSLois Curfman McInnes   info->fill_ratio_given  = 0; /* no parallel LU/ILU/Cholesky */
15314e220ebcSLois Curfman McInnes   info->fill_ratio_needed = 0;
15324e220ebcSLois Curfman McInnes   info->factor_mallocs    = 0;
15333a40ed3dSBarry Smith   PetscFunctionReturn(0);
15340ac07820SSatish Balay }
15350ac07820SSatish Balay 
15364a2ae208SSatish Balay #undef __FUNCT__
15374a2ae208SSatish Balay #define __FUNCT__ "MatSetOption_MPIBAIJ"
1538dfbe8321SBarry Smith PetscErrorCode MatSetOption_MPIBAIJ(Mat A,MatOption op)
153958667388SSatish Balay {
154058667388SSatish Balay   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)A->data;
1541dfbe8321SBarry Smith   PetscErrorCode ierr;
154258667388SSatish Balay 
1543d64ed03dSBarry Smith   PetscFunctionBegin;
154412c028f9SKris Buschelman   switch (op) {
154512c028f9SKris Buschelman   case MAT_NO_NEW_NONZERO_LOCATIONS:
154612c028f9SKris Buschelman   case MAT_YES_NEW_NONZERO_LOCATIONS:
154712c028f9SKris Buschelman   case MAT_COLUMNS_UNSORTED:
154812c028f9SKris Buschelman   case MAT_COLUMNS_SORTED:
154912c028f9SKris Buschelman   case MAT_NEW_NONZERO_ALLOCATION_ERR:
155012c028f9SKris Buschelman   case MAT_KEEP_ZEROED_ROWS:
155112c028f9SKris Buschelman   case MAT_NEW_NONZERO_LOCATION_ERR:
155298305bb5SBarry Smith     ierr = MatSetOption(a->A,op);CHKERRQ(ierr);
155398305bb5SBarry Smith     ierr = MatSetOption(a->B,op);CHKERRQ(ierr);
155412c028f9SKris Buschelman     break;
155512c028f9SKris Buschelman   case MAT_ROW_ORIENTED:
15567c922b88SBarry Smith     a->roworiented = PETSC_TRUE;
155798305bb5SBarry Smith     ierr = MatSetOption(a->A,op);CHKERRQ(ierr);
155898305bb5SBarry Smith     ierr = MatSetOption(a->B,op);CHKERRQ(ierr);
155912c028f9SKris Buschelman     break;
156012c028f9SKris Buschelman   case MAT_ROWS_SORTED:
156112c028f9SKris Buschelman   case MAT_ROWS_UNSORTED:
156212c028f9SKris Buschelman   case MAT_YES_NEW_DIAGONALS:
1563290bbb0aSBarry Smith     ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr);
156412c028f9SKris Buschelman     break;
156512c028f9SKris Buschelman   case MAT_COLUMN_ORIENTED:
15667c922b88SBarry Smith     a->roworiented = PETSC_FALSE;
156798305bb5SBarry Smith     ierr = MatSetOption(a->A,op);CHKERRQ(ierr);
156898305bb5SBarry Smith     ierr = MatSetOption(a->B,op);CHKERRQ(ierr);
156912c028f9SKris Buschelman     break;
157012c028f9SKris Buschelman   case MAT_IGNORE_OFF_PROC_ENTRIES:
15717c922b88SBarry Smith     a->donotstash = PETSC_TRUE;
157212c028f9SKris Buschelman     break;
157312c028f9SKris Buschelman   case MAT_NO_NEW_DIAGONALS:
157429bbc08cSBarry Smith     SETERRQ(PETSC_ERR_SUP,"MAT_NO_NEW_DIAGONALS");
157512c028f9SKris Buschelman   case MAT_USE_HASH_TABLE:
15767c922b88SBarry Smith     a->ht_flag = PETSC_TRUE;
157712c028f9SKris Buschelman     break;
157877e54ba9SKris Buschelman   case MAT_SYMMETRIC:
157977e54ba9SKris Buschelman   case MAT_STRUCTURALLY_SYMMETRIC:
15802188ac68SBarry Smith   case MAT_HERMITIAN:
15812188ac68SBarry Smith   case MAT_SYMMETRY_ETERNAL:
15822188ac68SBarry Smith     ierr = MatSetOption(a->A,op);CHKERRQ(ierr);
15832188ac68SBarry Smith     break;
15849a4540c5SBarry Smith   case MAT_NOT_SYMMETRIC:
15859a4540c5SBarry Smith   case MAT_NOT_STRUCTURALLY_SYMMETRIC:
15869a4540c5SBarry Smith   case MAT_NOT_HERMITIAN:
15879a4540c5SBarry Smith   case MAT_NOT_SYMMETRY_ETERNAL:
1588290bbb0aSBarry Smith     ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr);
158977e54ba9SKris Buschelman     break;
159012c028f9SKris Buschelman   default:
1591ad86a440SBarry Smith     SETERRQ1(PETSC_ERR_SUP,"unknown option %d",op);
1592d64ed03dSBarry Smith   }
15933a40ed3dSBarry Smith   PetscFunctionReturn(0);
159458667388SSatish Balay }
159558667388SSatish Balay 
15964a2ae208SSatish Balay #undef __FUNCT__
15974a2ae208SSatish Balay #define __FUNCT__ "MatTranspose_MPIBAIJ("
1598dfbe8321SBarry Smith PetscErrorCode MatTranspose_MPIBAIJ(Mat A,Mat *matout)
15990ac07820SSatish Balay {
16000ac07820SSatish Balay   Mat_MPIBAIJ    *baij = (Mat_MPIBAIJ*)A->data;
16010ac07820SSatish Balay   Mat_SeqBAIJ    *Aloc;
16020ac07820SSatish Balay   Mat            B;
1603dfbe8321SBarry Smith   PetscErrorCode ierr;
1604899cda47SBarry Smith   PetscInt       M=A->rmap.N,N=A->cmap.N,*ai,*aj,i,*rvals,j,k,col;
1605899cda47SBarry Smith   PetscInt       bs=A->rmap.bs,mbs=baij->mbs;
16063eda8832SBarry Smith   MatScalar      *a;
16070ac07820SSatish Balay 
1608d64ed03dSBarry Smith   PetscFunctionBegin;
160929bbc08cSBarry Smith   if (!matout && M != N) SETERRQ(PETSC_ERR_ARG_SIZ,"Square matrix only for in-place");
1610f69a0ea3SMatthew Knepley   ierr = MatCreate(A->comm,&B);CHKERRQ(ierr);
1611899cda47SBarry Smith   ierr = MatSetSizes(B,A->cmap.n,A->rmap.n,N,M);CHKERRQ(ierr);
1612f204ca49SKris Buschelman   ierr = MatSetType(B,A->type_name);CHKERRQ(ierr);
1613899cda47SBarry Smith   ierr = MatMPIBAIJSetPreallocation(B,A->rmap.bs,0,PETSC_NULL,0,PETSC_NULL);CHKERRQ(ierr);
16140ac07820SSatish Balay 
16150ac07820SSatish Balay   /* copy over the A part */
16160ac07820SSatish Balay   Aloc = (Mat_SeqBAIJ*)baij->A->data;
16170ac07820SSatish Balay   ai   = Aloc->i; aj = Aloc->j; a = Aloc->a;
1618b24ad042SBarry Smith   ierr = PetscMalloc(bs*sizeof(PetscInt),&rvals);CHKERRQ(ierr);
16190ac07820SSatish Balay 
16200ac07820SSatish Balay   for (i=0; i<mbs; i++) {
1621899cda47SBarry Smith     rvals[0] = bs*(baij->rstartbs + i);
16220ac07820SSatish Balay     for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; }
16230ac07820SSatish Balay     for (j=ai[i]; j<ai[i+1]; j++) {
1624899cda47SBarry Smith       col = (baij->cstartbs+aj[j])*bs;
16250ac07820SSatish Balay       for (k=0; k<bs; k++) {
162693fea6afSBarry Smith         ierr = MatSetValues_MPIBAIJ_MatScalar(B,1,&col,bs,rvals,a,INSERT_VALUES);CHKERRQ(ierr);
16270ac07820SSatish Balay         col++; a += bs;
16280ac07820SSatish Balay       }
16290ac07820SSatish Balay     }
16300ac07820SSatish Balay   }
16310ac07820SSatish Balay   /* copy over the B part */
16320ac07820SSatish Balay   Aloc = (Mat_SeqBAIJ*)baij->B->data;
16330ac07820SSatish Balay   ai = Aloc->i; aj = Aloc->j; a = Aloc->a;
16340ac07820SSatish Balay   for (i=0; i<mbs; i++) {
1635899cda47SBarry Smith     rvals[0] = bs*(baij->rstartbs + i);
16360ac07820SSatish Balay     for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; }
16370ac07820SSatish Balay     for (j=ai[i]; j<ai[i+1]; j++) {
16380ac07820SSatish Balay       col = baij->garray[aj[j]]*bs;
16390ac07820SSatish Balay       for (k=0; k<bs; k++) {
164093fea6afSBarry Smith         ierr = MatSetValues_MPIBAIJ_MatScalar(B,1,&col,bs,rvals,a,INSERT_VALUES);CHKERRQ(ierr);
16410ac07820SSatish Balay         col++; a += bs;
16420ac07820SSatish Balay       }
16430ac07820SSatish Balay     }
16440ac07820SSatish Balay   }
1645606d414cSSatish Balay   ierr = PetscFree(rvals);CHKERRQ(ierr);
16460ac07820SSatish Balay   ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
16470ac07820SSatish Balay   ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
16480ac07820SSatish Balay 
16497c922b88SBarry Smith   if (matout) {
16500ac07820SSatish Balay     *matout = B;
16510ac07820SSatish Balay   } else {
1652273d9f13SBarry Smith     ierr = MatHeaderCopy(A,B);CHKERRQ(ierr);
16530ac07820SSatish Balay   }
16543a40ed3dSBarry Smith   PetscFunctionReturn(0);
16550ac07820SSatish Balay }
16560e95ebc0SSatish Balay 
16574a2ae208SSatish Balay #undef __FUNCT__
16584a2ae208SSatish Balay #define __FUNCT__ "MatDiagonalScale_MPIBAIJ"
1659dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_MPIBAIJ(Mat mat,Vec ll,Vec rr)
16600e95ebc0SSatish Balay {
166136c4a09eSSatish Balay   Mat_MPIBAIJ    *baij = (Mat_MPIBAIJ*)mat->data;
166236c4a09eSSatish Balay   Mat            a = baij->A,b = baij->B;
1663dfbe8321SBarry Smith   PetscErrorCode ierr;
1664b24ad042SBarry Smith   PetscInt       s1,s2,s3;
16650e95ebc0SSatish Balay 
1666d64ed03dSBarry Smith   PetscFunctionBegin;
166736c4a09eSSatish Balay   ierr = MatGetLocalSize(mat,&s2,&s3);CHKERRQ(ierr);
166836c4a09eSSatish Balay   if (rr) {
166936c4a09eSSatish Balay     ierr = VecGetLocalSize(rr,&s1);CHKERRQ(ierr);
167029bbc08cSBarry Smith     if (s1!=s3) SETERRQ(PETSC_ERR_ARG_SIZ,"right vector non-conforming local size");
167136c4a09eSSatish Balay     /* Overlap communication with computation. */
1672ca9f406cSSatish Balay     ierr = VecScatterBegin(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
167336c4a09eSSatish Balay   }
16740e95ebc0SSatish Balay   if (ll) {
16750e95ebc0SSatish Balay     ierr = VecGetLocalSize(ll,&s1);CHKERRQ(ierr);
167629bbc08cSBarry Smith     if (s1!=s2) SETERRQ(PETSC_ERR_ARG_SIZ,"left vector non-conforming local size");
1677a21fb8cbSBarry Smith     ierr = (*b->ops->diagonalscale)(b,ll,PETSC_NULL);CHKERRQ(ierr);
16780e95ebc0SSatish Balay   }
167936c4a09eSSatish Balay   /* scale  the diagonal block */
168036c4a09eSSatish Balay   ierr = (*a->ops->diagonalscale)(a,ll,rr);CHKERRQ(ierr);
168136c4a09eSSatish Balay 
168236c4a09eSSatish Balay   if (rr) {
168336c4a09eSSatish Balay     /* Do a scatter end and then right scale the off-diagonal block */
1684ca9f406cSSatish Balay     ierr = VecScatterEnd(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1685a21fb8cbSBarry Smith     ierr = (*b->ops->diagonalscale)(b,PETSC_NULL,baij->lvec);CHKERRQ(ierr);
168636c4a09eSSatish Balay   }
168736c4a09eSSatish Balay 
16883a40ed3dSBarry Smith   PetscFunctionReturn(0);
16890e95ebc0SSatish Balay }
16900e95ebc0SSatish Balay 
16914a2ae208SSatish Balay #undef __FUNCT__
16924a2ae208SSatish Balay #define __FUNCT__ "MatZeroRows_MPIBAIJ"
1693f4df32b1SMatthew Knepley PetscErrorCode MatZeroRows_MPIBAIJ(Mat A,PetscInt N,const PetscInt rows[],PetscScalar diag)
16940ac07820SSatish Balay {
16950ac07820SSatish Balay   Mat_MPIBAIJ    *l = (Mat_MPIBAIJ*)A->data;
16966849ba73SBarry Smith   PetscErrorCode ierr;
1697b24ad042SBarry Smith   PetscMPIInt    imdex,size = l->size,n,rank = l->rank;
1698899cda47SBarry Smith   PetscInt       i,*owners = A->rmap.range;
1699b24ad042SBarry Smith   PetscInt       *nprocs,j,idx,nsends,row;
1700b24ad042SBarry Smith   PetscInt       nmax,*svalues,*starts,*owner,nrecvs;
17016543fbbaSBarry Smith   PetscInt       *rvalues,tag = A->tag,count,base,slen,*source,lastidx = -1;
1702357c27ecSBarry Smith   PetscInt       *lens,*lrows,*values,rstart_bs=A->rmap.rstart;
17030ac07820SSatish Balay   MPI_Comm       comm = A->comm;
17040ac07820SSatish Balay   MPI_Request    *send_waits,*recv_waits;
17050ac07820SSatish Balay   MPI_Status     recv_status,*send_status;
17066543fbbaSBarry Smith #if defined(PETSC_DEBUG)
17076543fbbaSBarry Smith   PetscTruth     found = PETSC_FALSE;
17086543fbbaSBarry Smith #endif
17090ac07820SSatish Balay 
1710d64ed03dSBarry Smith   PetscFunctionBegin;
17110ac07820SSatish Balay   /*  first count number of contributors to each processor */
1712b24ad042SBarry Smith   ierr  = PetscMalloc(2*size*sizeof(PetscInt),&nprocs);CHKERRQ(ierr);
1713b24ad042SBarry Smith   ierr  = PetscMemzero(nprocs,2*size*sizeof(PetscInt));CHKERRQ(ierr);
1714b24ad042SBarry Smith   ierr  = PetscMalloc((N+1)*sizeof(PetscInt),&owner);CHKERRQ(ierr); /* see note*/
17156543fbbaSBarry Smith   j = 0;
17160ac07820SSatish Balay   for (i=0; i<N; i++) {
17176543fbbaSBarry Smith     if (lastidx > (idx = rows[i])) j = 0;
17186543fbbaSBarry Smith     lastidx = idx;
17196543fbbaSBarry Smith     for (; j<size; j++) {
1720357c27ecSBarry Smith       if (idx >= owners[j] && idx < owners[j+1]) {
17216543fbbaSBarry Smith         nprocs[2*j]++;
17226543fbbaSBarry Smith         nprocs[2*j+1] = 1;
17236543fbbaSBarry Smith         owner[i] = j;
17246543fbbaSBarry Smith #if defined(PETSC_DEBUG)
17256543fbbaSBarry Smith         found = PETSC_TRUE;
17266543fbbaSBarry Smith #endif
17276543fbbaSBarry Smith         break;
17280ac07820SSatish Balay       }
17290ac07820SSatish Balay     }
17306543fbbaSBarry Smith #if defined(PETSC_DEBUG)
173129bbc08cSBarry Smith     if (!found) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Index out of range");
17326543fbbaSBarry Smith     found = PETSC_FALSE;
17336543fbbaSBarry Smith #endif
17340ac07820SSatish Balay   }
1735c1dc657dSBarry Smith   nsends = 0;  for (i=0; i<size; i++) { nsends += nprocs[2*i+1];}
17360ac07820SSatish Balay 
17370ac07820SSatish Balay   /* inform other processors of number of messages and max length*/
1738c1dc657dSBarry Smith   ierr = PetscMaxSum(comm,nprocs,&nmax,&nrecvs);CHKERRQ(ierr);
17390ac07820SSatish Balay 
17400ac07820SSatish Balay   /* post receives:   */
1741b24ad042SBarry Smith   ierr = PetscMalloc((nrecvs+1)*(nmax+1)*sizeof(PetscInt),&rvalues);CHKERRQ(ierr);
1742b0a32e0cSBarry Smith   ierr = PetscMalloc((nrecvs+1)*sizeof(MPI_Request),&recv_waits);CHKERRQ(ierr);
17430ac07820SSatish Balay   for (i=0; i<nrecvs; i++) {
1744b24ad042SBarry Smith     ierr = MPI_Irecv(rvalues+nmax*i,nmax,MPIU_INT,MPI_ANY_SOURCE,tag,comm,recv_waits+i);CHKERRQ(ierr);
17450ac07820SSatish Balay   }
17460ac07820SSatish Balay 
17470ac07820SSatish Balay   /* do sends:
17480ac07820SSatish Balay      1) starts[i] gives the starting index in svalues for stuff going to
17490ac07820SSatish Balay      the ith processor
17500ac07820SSatish Balay   */
1751b24ad042SBarry Smith   ierr = PetscMalloc((N+1)*sizeof(PetscInt),&svalues);CHKERRQ(ierr);
1752b0a32e0cSBarry Smith   ierr = PetscMalloc((nsends+1)*sizeof(MPI_Request),&send_waits);CHKERRQ(ierr);
1753b24ad042SBarry Smith   ierr = PetscMalloc((size+1)*sizeof(PetscInt),&starts);CHKERRQ(ierr);
17540ac07820SSatish Balay   starts[0]  = 0;
1755c1dc657dSBarry Smith   for (i=1; i<size; i++) { starts[i] = starts[i-1] + nprocs[2*i-2];}
17560ac07820SSatish Balay   for (i=0; i<N; i++) {
17570ac07820SSatish Balay     svalues[starts[owner[i]]++] = rows[i];
17580ac07820SSatish Balay   }
17590ac07820SSatish Balay 
17600ac07820SSatish Balay   starts[0] = 0;
1761c1dc657dSBarry Smith   for (i=1; i<size+1; i++) { starts[i] = starts[i-1] + nprocs[2*i-2];}
17620ac07820SSatish Balay   count = 0;
17630ac07820SSatish Balay   for (i=0; i<size; i++) {
1764c1dc657dSBarry Smith     if (nprocs[2*i+1]) {
1765b24ad042SBarry Smith       ierr = MPI_Isend(svalues+starts[i],nprocs[2*i],MPIU_INT,i,tag,comm,send_waits+count++);CHKERRQ(ierr);
17660ac07820SSatish Balay     }
17670ac07820SSatish Balay   }
1768606d414cSSatish Balay   ierr = PetscFree(starts);CHKERRQ(ierr);
17690ac07820SSatish Balay 
1770357c27ecSBarry Smith   base = owners[rank];
17710ac07820SSatish Balay 
17720ac07820SSatish Balay   /*  wait on receives */
1773b24ad042SBarry Smith   ierr   = PetscMalloc(2*(nrecvs+1)*sizeof(PetscInt),&lens);CHKERRQ(ierr);
17740ac07820SSatish Balay   source = lens + nrecvs;
17750ac07820SSatish Balay   count  = nrecvs; slen = 0;
17760ac07820SSatish Balay   while (count) {
1777ca161407SBarry Smith     ierr = MPI_Waitany(nrecvs,recv_waits,&imdex,&recv_status);CHKERRQ(ierr);
17780ac07820SSatish Balay     /* unpack receives into our local space */
1779b24ad042SBarry Smith     ierr = MPI_Get_count(&recv_status,MPIU_INT,&n);CHKERRQ(ierr);
17800ac07820SSatish Balay     source[imdex]  = recv_status.MPI_SOURCE;
17810ac07820SSatish Balay     lens[imdex]    = n;
17820ac07820SSatish Balay     slen          += n;
17830ac07820SSatish Balay     count--;
17840ac07820SSatish Balay   }
1785606d414cSSatish Balay   ierr = PetscFree(recv_waits);CHKERRQ(ierr);
17860ac07820SSatish Balay 
17870ac07820SSatish Balay   /* move the data into the send scatter */
1788b24ad042SBarry Smith   ierr = PetscMalloc((slen+1)*sizeof(PetscInt),&lrows);CHKERRQ(ierr);
17890ac07820SSatish Balay   count = 0;
17900ac07820SSatish Balay   for (i=0; i<nrecvs; i++) {
17910ac07820SSatish Balay     values = rvalues + i*nmax;
17920ac07820SSatish Balay     for (j=0; j<lens[i]; j++) {
17930ac07820SSatish Balay       lrows[count++] = values[j] - base;
17940ac07820SSatish Balay     }
17950ac07820SSatish Balay   }
1796606d414cSSatish Balay   ierr = PetscFree(rvalues);CHKERRQ(ierr);
1797606d414cSSatish Balay   ierr = PetscFree(lens);CHKERRQ(ierr);
1798606d414cSSatish Balay   ierr = PetscFree(owner);CHKERRQ(ierr);
1799606d414cSSatish Balay   ierr = PetscFree(nprocs);CHKERRQ(ierr);
18000ac07820SSatish Balay 
18010ac07820SSatish Balay   /* actually zap the local rows */
180272dacd9aSBarry Smith   /*
180372dacd9aSBarry Smith         Zero the required rows. If the "diagonal block" of the matrix
1804a8c7a070SBarry Smith      is square and the user wishes to set the diagonal we use separate
180572dacd9aSBarry Smith      code so that MatSetValues() is not called for each diagonal allocating
180672dacd9aSBarry Smith      new memory, thus calling lots of mallocs and slowing things down.
180772dacd9aSBarry Smith 
1808f4df32b1SMatthew Knepley        Contributed by: Matthew Knepley
180972dacd9aSBarry Smith   */
18109c957beeSSatish Balay   /* must zero l->B before l->A because the (diag) case below may put values into l->B*/
1811f4df32b1SMatthew Knepley   ierr = MatZeroRows_SeqBAIJ(l->B,slen,lrows,0.0);CHKERRQ(ierr);
1812899cda47SBarry Smith   if ((diag != 0.0) && (l->A->rmap.N == l->A->cmap.N)) {
1813f4df32b1SMatthew Knepley     ierr = MatZeroRows_SeqBAIJ(l->A,slen,lrows,diag);CHKERRQ(ierr);
1814f4df32b1SMatthew Knepley   } else if (diag != 0.0) {
1815f4df32b1SMatthew Knepley     ierr = MatZeroRows_SeqBAIJ(l->A,slen,lrows,0.0);CHKERRQ(ierr);
1816fa46199cSSatish Balay     if (((Mat_SeqBAIJ*)l->A->data)->nonew) {
181729bbc08cSBarry Smith       SETERRQ(PETSC_ERR_SUP,"MatZeroRows() on rectangular matrices cannot be used with the Mat options \n\
1818fa46199cSSatish Balay MAT_NO_NEW_NONZERO_LOCATIONS,MAT_NEW_NONZERO_LOCATION_ERR,MAT_NEW_NONZERO_ALLOCATION_ERR");
18196525c446SSatish Balay     }
1820a07cd24cSSatish Balay     for (i=0; i<slen; i++) {
1821a07cd24cSSatish Balay       row  = lrows[i] + rstart_bs;
1822f4df32b1SMatthew Knepley       ierr = MatSetValues(A,1,&row,1,&row,&diag,INSERT_VALUES);CHKERRQ(ierr);
1823a07cd24cSSatish Balay     }
1824a07cd24cSSatish Balay     ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
1825a07cd24cSSatish Balay     ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
18269c957beeSSatish Balay   } else {
1827f4df32b1SMatthew Knepley     ierr = MatZeroRows_SeqBAIJ(l->A,slen,lrows,0.0);CHKERRQ(ierr);
1828a07cd24cSSatish Balay   }
18299c957beeSSatish Balay 
1830606d414cSSatish Balay   ierr = PetscFree(lrows);CHKERRQ(ierr);
1831a07cd24cSSatish Balay 
18320ac07820SSatish Balay   /* wait on sends */
18330ac07820SSatish Balay   if (nsends) {
183482502324SSatish Balay     ierr = PetscMalloc(nsends*sizeof(MPI_Status),&send_status);CHKERRQ(ierr);
1835ca161407SBarry Smith     ierr = MPI_Waitall(nsends,send_waits,send_status);CHKERRQ(ierr);
1836606d414cSSatish Balay     ierr = PetscFree(send_status);CHKERRQ(ierr);
18370ac07820SSatish Balay   }
1838606d414cSSatish Balay   ierr = PetscFree(send_waits);CHKERRQ(ierr);
1839606d414cSSatish Balay   ierr = PetscFree(svalues);CHKERRQ(ierr);
18400ac07820SSatish Balay 
18413a40ed3dSBarry Smith   PetscFunctionReturn(0);
18420ac07820SSatish Balay }
184372dacd9aSBarry Smith 
18444a2ae208SSatish Balay #undef __FUNCT__
18454a2ae208SSatish Balay #define __FUNCT__ "MatSetUnfactored_MPIBAIJ"
1846dfbe8321SBarry Smith PetscErrorCode MatSetUnfactored_MPIBAIJ(Mat A)
1847bb5a7306SBarry Smith {
1848bb5a7306SBarry Smith   Mat_MPIBAIJ    *a   = (Mat_MPIBAIJ*)A->data;
1849dfbe8321SBarry Smith   PetscErrorCode ierr;
1850d64ed03dSBarry Smith 
1851d64ed03dSBarry Smith   PetscFunctionBegin;
1852bb5a7306SBarry Smith   ierr = MatSetUnfactored(a->A);CHKERRQ(ierr);
18533a40ed3dSBarry Smith   PetscFunctionReturn(0);
1854bb5a7306SBarry Smith }
1855bb5a7306SBarry Smith 
18566849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIBAIJ(Mat,MatDuplicateOption,Mat *);
18570ac07820SSatish Balay 
18584a2ae208SSatish Balay #undef __FUNCT__
18594a2ae208SSatish Balay #define __FUNCT__ "MatEqual_MPIBAIJ"
1860dfbe8321SBarry Smith PetscErrorCode MatEqual_MPIBAIJ(Mat A,Mat B,PetscTruth *flag)
18617fc3c18eSBarry Smith {
18627fc3c18eSBarry Smith   Mat_MPIBAIJ    *matB = (Mat_MPIBAIJ*)B->data,*matA = (Mat_MPIBAIJ*)A->data;
18637fc3c18eSBarry Smith   Mat            a,b,c,d;
18647fc3c18eSBarry Smith   PetscTruth     flg;
1865dfbe8321SBarry Smith   PetscErrorCode ierr;
18667fc3c18eSBarry Smith 
18677fc3c18eSBarry Smith   PetscFunctionBegin;
18687fc3c18eSBarry Smith   a = matA->A; b = matA->B;
18697fc3c18eSBarry Smith   c = matB->A; d = matB->B;
18707fc3c18eSBarry Smith 
18717fc3c18eSBarry Smith   ierr = MatEqual(a,c,&flg);CHKERRQ(ierr);
1872abc0a331SBarry Smith   if (flg) {
18737fc3c18eSBarry Smith     ierr = MatEqual(b,d,&flg);CHKERRQ(ierr);
18747fc3c18eSBarry Smith   }
18757fc3c18eSBarry Smith   ierr = MPI_Allreduce(&flg,flag,1,MPI_INT,MPI_LAND,A->comm);CHKERRQ(ierr);
18767fc3c18eSBarry Smith   PetscFunctionReturn(0);
18777fc3c18eSBarry Smith }
18787fc3c18eSBarry Smith 
18793c896bc6SHong Zhang #undef __FUNCT__
18803c896bc6SHong Zhang #define __FUNCT__ "MatCopy_MPIBAIJ"
18813c896bc6SHong Zhang PetscErrorCode MatCopy_MPIBAIJ(Mat A,Mat B,MatStructure str)
18823c896bc6SHong Zhang {
18833c896bc6SHong Zhang   PetscErrorCode ierr;
18843c896bc6SHong Zhang   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ *)A->data;
18853c896bc6SHong Zhang   Mat_MPIBAIJ    *b = (Mat_MPIBAIJ *)B->data;
18863c896bc6SHong Zhang 
18873c896bc6SHong Zhang   PetscFunctionBegin;
18883c896bc6SHong Zhang   /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */
18893c896bc6SHong Zhang   if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) {
18903c896bc6SHong Zhang     ierr = MatCopy_Basic(A,B,str);CHKERRQ(ierr);
18913c896bc6SHong Zhang   } else {
18923c896bc6SHong Zhang     ierr = MatCopy(a->A,b->A,str);CHKERRQ(ierr);
18933c896bc6SHong Zhang     ierr = MatCopy(a->B,b->B,str);CHKERRQ(ierr);
18943c896bc6SHong Zhang   }
18953c896bc6SHong Zhang   PetscFunctionReturn(0);
18963c896bc6SHong Zhang }
1897273d9f13SBarry Smith 
18984a2ae208SSatish Balay #undef __FUNCT__
18994a2ae208SSatish Balay #define __FUNCT__ "MatSetUpPreallocation_MPIBAIJ"
1900dfbe8321SBarry Smith PetscErrorCode MatSetUpPreallocation_MPIBAIJ(Mat A)
1901273d9f13SBarry Smith {
1902dfbe8321SBarry Smith   PetscErrorCode ierr;
1903273d9f13SBarry Smith 
1904273d9f13SBarry Smith   PetscFunctionBegin;
19057edd0491SSatish Balay   ierr =  MatMPIBAIJSetPreallocation(A,PetscMax(A->rmap.bs,1),PETSC_DEFAULT,0,PETSC_DEFAULT,0);CHKERRQ(ierr);
1906273d9f13SBarry Smith   PetscFunctionReturn(0);
1907273d9f13SBarry Smith }
1908273d9f13SBarry Smith 
19094fe895cdSHong Zhang #include "petscblaslapack.h"
19104fe895cdSHong Zhang #undef __FUNCT__
19114fe895cdSHong Zhang #define __FUNCT__ "MatAXPY_MPIBAIJ"
19124fe895cdSHong Zhang PetscErrorCode MatAXPY_MPIBAIJ(Mat Y,PetscScalar a,Mat X,MatStructure str)
19134fe895cdSHong Zhang {
19144fe895cdSHong Zhang   PetscErrorCode ierr;
19154fe895cdSHong Zhang   Mat_MPIBAIJ    *xx=(Mat_MPIBAIJ *)X->data,*yy=(Mat_MPIBAIJ *)Y->data;
19164fe895cdSHong Zhang   PetscBLASInt   bnz,one=1;
19174fe895cdSHong Zhang   Mat_SeqBAIJ    *x,*y;
19184fe895cdSHong Zhang 
19194fe895cdSHong Zhang   PetscFunctionBegin;
19204fe895cdSHong Zhang   if (str == SAME_NONZERO_PATTERN) {
19214fe895cdSHong Zhang     PetscScalar alpha = a;
19224fe895cdSHong Zhang     x = (Mat_SeqBAIJ *)xx->A->data;
19234fe895cdSHong Zhang     y = (Mat_SeqBAIJ *)yy->A->data;
19244fe895cdSHong Zhang     bnz = (PetscBLASInt)x->nz;
19254fe895cdSHong Zhang     BLASaxpy_(&bnz,&alpha,x->a,&one,y->a,&one);
19264fe895cdSHong Zhang     x = (Mat_SeqBAIJ *)xx->B->data;
19274fe895cdSHong Zhang     y = (Mat_SeqBAIJ *)yy->B->data;
19284fe895cdSHong Zhang     bnz = (PetscBLASInt)x->nz;
19294fe895cdSHong Zhang     BLASaxpy_(&bnz,&alpha,x->a,&one,y->a,&one);
19304fe895cdSHong Zhang   } else {
19314fe895cdSHong Zhang     ierr = MatAXPY_Basic(Y,a,X,str);CHKERRQ(ierr);
19324fe895cdSHong Zhang   }
19334fe895cdSHong Zhang   PetscFunctionReturn(0);
19344fe895cdSHong Zhang }
19354fe895cdSHong Zhang 
193699cafbc1SBarry Smith #undef __FUNCT__
193799cafbc1SBarry Smith #define __FUNCT__ "MatRealPart_MPIBAIJ"
193899cafbc1SBarry Smith PetscErrorCode MatRealPart_MPIBAIJ(Mat A)
193999cafbc1SBarry Smith {
194099cafbc1SBarry Smith   Mat_MPIBAIJ   *a = (Mat_MPIBAIJ*)A->data;
194199cafbc1SBarry Smith   PetscErrorCode ierr;
194299cafbc1SBarry Smith 
194399cafbc1SBarry Smith   PetscFunctionBegin;
194499cafbc1SBarry Smith   ierr = MatRealPart(a->A);CHKERRQ(ierr);
194599cafbc1SBarry Smith   ierr = MatRealPart(a->B);CHKERRQ(ierr);
194699cafbc1SBarry Smith   PetscFunctionReturn(0);
194799cafbc1SBarry Smith }
194899cafbc1SBarry Smith 
194999cafbc1SBarry Smith #undef __FUNCT__
195099cafbc1SBarry Smith #define __FUNCT__ "MatImaginaryPart_MPIBAIJ"
195199cafbc1SBarry Smith PetscErrorCode MatImaginaryPart_MPIBAIJ(Mat A)
195299cafbc1SBarry Smith {
195399cafbc1SBarry Smith   Mat_MPIBAIJ   *a = (Mat_MPIBAIJ*)A->data;
195499cafbc1SBarry Smith   PetscErrorCode ierr;
195599cafbc1SBarry Smith 
195699cafbc1SBarry Smith   PetscFunctionBegin;
195799cafbc1SBarry Smith   ierr = MatImaginaryPart(a->A);CHKERRQ(ierr);
195899cafbc1SBarry Smith   ierr = MatImaginaryPart(a->B);CHKERRQ(ierr);
195999cafbc1SBarry Smith   PetscFunctionReturn(0);
196099cafbc1SBarry Smith }
196199cafbc1SBarry Smith 
196279bdfe76SSatish Balay /* -------------------------------------------------------------------*/
1963cc2dc46cSBarry Smith static struct _MatOps MatOps_Values = {
1964cc2dc46cSBarry Smith        MatSetValues_MPIBAIJ,
1965cc2dc46cSBarry Smith        MatGetRow_MPIBAIJ,
1966cc2dc46cSBarry Smith        MatRestoreRow_MPIBAIJ,
1967cc2dc46cSBarry Smith        MatMult_MPIBAIJ,
196897304618SKris Buschelman /* 4*/ MatMultAdd_MPIBAIJ,
19697c922b88SBarry Smith        MatMultTranspose_MPIBAIJ,
19707c922b88SBarry Smith        MatMultTransposeAdd_MPIBAIJ,
1971cc2dc46cSBarry Smith        0,
1972cc2dc46cSBarry Smith        0,
1973cc2dc46cSBarry Smith        0,
197497304618SKris Buschelman /*10*/ 0,
1975cc2dc46cSBarry Smith        0,
1976cc2dc46cSBarry Smith        0,
1977cc2dc46cSBarry Smith        0,
1978cc2dc46cSBarry Smith        MatTranspose_MPIBAIJ,
197997304618SKris Buschelman /*15*/ MatGetInfo_MPIBAIJ,
19807fc3c18eSBarry Smith        MatEqual_MPIBAIJ,
1981cc2dc46cSBarry Smith        MatGetDiagonal_MPIBAIJ,
1982cc2dc46cSBarry Smith        MatDiagonalScale_MPIBAIJ,
1983cc2dc46cSBarry Smith        MatNorm_MPIBAIJ,
198497304618SKris Buschelman /*20*/ MatAssemblyBegin_MPIBAIJ,
1985cc2dc46cSBarry Smith        MatAssemblyEnd_MPIBAIJ,
1986cc2dc46cSBarry Smith        0,
1987cc2dc46cSBarry Smith        MatSetOption_MPIBAIJ,
1988cc2dc46cSBarry Smith        MatZeroEntries_MPIBAIJ,
198997304618SKris Buschelman /*25*/ MatZeroRows_MPIBAIJ,
1990cc2dc46cSBarry Smith        0,
1991cc2dc46cSBarry Smith        0,
1992cc2dc46cSBarry Smith        0,
1993cc2dc46cSBarry Smith        0,
199497304618SKris Buschelman /*30*/ MatSetUpPreallocation_MPIBAIJ,
1995273d9f13SBarry Smith        0,
1996cc2dc46cSBarry Smith        0,
1997cc2dc46cSBarry Smith        0,
1998cc2dc46cSBarry Smith        0,
199997304618SKris Buschelman /*35*/ MatDuplicate_MPIBAIJ,
2000cc2dc46cSBarry Smith        0,
2001cc2dc46cSBarry Smith        0,
2002cc2dc46cSBarry Smith        0,
2003cc2dc46cSBarry Smith        0,
20044fe895cdSHong Zhang /*40*/ MatAXPY_MPIBAIJ,
2005cc2dc46cSBarry Smith        MatGetSubMatrices_MPIBAIJ,
2006cc2dc46cSBarry Smith        MatIncreaseOverlap_MPIBAIJ,
2007cc2dc46cSBarry Smith        MatGetValues_MPIBAIJ,
20083c896bc6SHong Zhang        MatCopy_MPIBAIJ,
20098c07d4e3SBarry Smith /*45*/ 0,
2010cc2dc46cSBarry Smith        MatScale_MPIBAIJ,
2011cc2dc46cSBarry Smith        0,
2012cc2dc46cSBarry Smith        0,
2013cc2dc46cSBarry Smith        0,
2014521d7252SBarry Smith /*50*/ 0,
2015cc2dc46cSBarry Smith        0,
2016cc2dc46cSBarry Smith        0,
2017cc2dc46cSBarry Smith        0,
2018cc2dc46cSBarry Smith        0,
201997304618SKris Buschelman /*55*/ 0,
2020cc2dc46cSBarry Smith        0,
2021cc2dc46cSBarry Smith        MatSetUnfactored_MPIBAIJ,
2022cc2dc46cSBarry Smith        0,
2023cc2dc46cSBarry Smith        MatSetValuesBlocked_MPIBAIJ,
202497304618SKris Buschelman /*60*/ 0,
2025f14a1c24SBarry Smith        MatDestroy_MPIBAIJ,
2026f14a1c24SBarry Smith        MatView_MPIBAIJ,
2027357abbc8SBarry Smith        0,
20287843d17aSBarry Smith        0,
202997304618SKris Buschelman /*65*/ 0,
20307843d17aSBarry Smith        0,
20317843d17aSBarry Smith        0,
20327843d17aSBarry Smith        0,
20337843d17aSBarry Smith        0,
2034985db425SBarry Smith /*70*/ MatGetRowMaxAbs_MPIBAIJ,
20357843d17aSBarry Smith        0,
203697304618SKris Buschelman        0,
203797304618SKris Buschelman        0,
203897304618SKris Buschelman        0,
203997304618SKris Buschelman /*75*/ 0,
204097304618SKris Buschelman        0,
204197304618SKris Buschelman        0,
204297304618SKris Buschelman        0,
204397304618SKris Buschelman        0,
204497304618SKris Buschelman /*80*/ 0,
204597304618SKris Buschelman        0,
204697304618SKris Buschelman        0,
204797304618SKris Buschelman        0,
2048865e5f61SKris Buschelman        MatLoad_MPIBAIJ,
2049865e5f61SKris Buschelman /*85*/ 0,
2050865e5f61SKris Buschelman        0,
2051865e5f61SKris Buschelman        0,
2052865e5f61SKris Buschelman        0,
2053865e5f61SKris Buschelman        0,
2054865e5f61SKris Buschelman /*90*/ 0,
2055865e5f61SKris Buschelman        0,
2056865e5f61SKris Buschelman        0,
2057865e5f61SKris Buschelman        0,
2058865e5f61SKris Buschelman        0,
2059865e5f61SKris Buschelman /*95*/ 0,
2060865e5f61SKris Buschelman        0,
2061865e5f61SKris Buschelman        0,
206299cafbc1SBarry Smith        0,
206399cafbc1SBarry Smith        0,
206499cafbc1SBarry Smith /*100*/0,
206599cafbc1SBarry Smith        0,
206699cafbc1SBarry Smith        0,
206799cafbc1SBarry Smith        0,
206899cafbc1SBarry Smith        0,
206999cafbc1SBarry Smith /*105*/0,
207099cafbc1SBarry Smith        MatRealPart_MPIBAIJ,
207199cafbc1SBarry Smith        MatImaginaryPart_MPIBAIJ};
207279bdfe76SSatish Balay 
20735ef9f2a5SBarry Smith 
2074e18c124aSSatish Balay EXTERN_C_BEGIN
20754a2ae208SSatish Balay #undef __FUNCT__
20764a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonalBlock_MPIBAIJ"
2077be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatGetDiagonalBlock_MPIBAIJ(Mat A,PetscTruth *iscopy,MatReuse reuse,Mat *a)
20785ef9f2a5SBarry Smith {
20795ef9f2a5SBarry Smith   PetscFunctionBegin;
20805ef9f2a5SBarry Smith   *a      = ((Mat_MPIBAIJ *)A->data)->A;
20815ef9f2a5SBarry Smith   *iscopy = PETSC_FALSE;
20825ef9f2a5SBarry Smith   PetscFunctionReturn(0);
20835ef9f2a5SBarry Smith }
2084e18c124aSSatish Balay EXTERN_C_END
208579bdfe76SSatish Balay 
2086273d9f13SBarry Smith EXTERN_C_BEGIN
2087f69a0ea3SMatthew Knepley extern PetscErrorCode PETSCMAT_DLLEXPORT MatConvert_MPIBAIJ_MPISBAIJ(Mat, MatType,MatReuse,Mat*);
2088d94109b8SHong Zhang EXTERN_C_END
2089d94109b8SHong Zhang 
2090aac34f13SBarry Smith #undef __FUNCT__
2091aac34f13SBarry Smith #define __FUNCT__ "MatMPIBAIJSetPreallocationCSR_MPIBAIJ"
2092b7940d39SSatish Balay PetscErrorCode MatMPIBAIJSetPreallocationCSR_MPIBAIJ(Mat B,PetscInt bs,const PetscInt Ii[],const PetscInt J[],const PetscScalar v[])
2093aac34f13SBarry Smith {
2094899cda47SBarry Smith   Mat_MPIBAIJ    *baij = (Mat_MPIBAIJ*)B->data;
2095899cda47SBarry Smith   PetscInt       m = B->rmap.n/bs,cstart = baij->cstartbs, cend = baij->cendbs,j,nnz,i,d;
2096899cda47SBarry Smith   PetscInt       *d_nnz,*o_nnz,nnz_max = 0,rstart = baij->rstartbs,ii;
2097aac34f13SBarry Smith   const PetscInt *JJ;
2098aac34f13SBarry Smith   PetscScalar    *values;
2099aac34f13SBarry Smith   PetscErrorCode ierr;
2100aac34f13SBarry Smith 
2101aac34f13SBarry Smith   PetscFunctionBegin;
2102aac34f13SBarry Smith #if defined(PETSC_OPT_g)
2103b7940d39SSatish Balay   if (Ii[0]) SETERRQ1(PETSC_ERR_ARG_RANGE,"Ii[0] must be 0 it is %D",Ii[0]);
2104aac34f13SBarry Smith #endif
2105aac34f13SBarry Smith   ierr  = PetscMalloc((2*m+1)*sizeof(PetscInt),&d_nnz);CHKERRQ(ierr);
2106aac34f13SBarry Smith   o_nnz = d_nnz + m;
2107aac34f13SBarry Smith 
2108aac34f13SBarry Smith   for (i=0; i<m; i++) {
2109b7940d39SSatish Balay     nnz     = Ii[i+1]- Ii[i];
2110b7940d39SSatish Balay     JJ      = J + Ii[i];
2111aac34f13SBarry Smith     nnz_max = PetscMax(nnz_max,nnz);
2112aac34f13SBarry Smith #if defined(PETSC_OPT_g)
2113aac34f13SBarry Smith     if (nnz < 0) SETERRQ1(PETSC_ERR_ARG_RANGE,"Local row %D has a negative %D number of columns",i,nnz);
2114aac34f13SBarry Smith #endif
2115aac34f13SBarry Smith     for (j=0; j<nnz; j++) {
2116aac34f13SBarry Smith       if (*JJ >= cstart) break;
2117aac34f13SBarry Smith       JJ++;
2118aac34f13SBarry Smith     }
2119aac34f13SBarry Smith     d = 0;
2120aac34f13SBarry Smith     for (; j<nnz; j++) {
2121aac34f13SBarry Smith       if (*JJ++ >= cend) break;
2122aac34f13SBarry Smith       d++;
2123aac34f13SBarry Smith     }
2124aac34f13SBarry Smith     d_nnz[i] = d;
2125aac34f13SBarry Smith     o_nnz[i] = nnz - d;
2126aac34f13SBarry Smith   }
2127aac34f13SBarry Smith   ierr = MatMPIBAIJSetPreallocation(B,bs,0,d_nnz,0,o_nnz);CHKERRQ(ierr);
2128aac34f13SBarry Smith   ierr = PetscFree(d_nnz);CHKERRQ(ierr);
2129aac34f13SBarry Smith 
2130aac34f13SBarry Smith   if (v) values = (PetscScalar*)v;
2131aac34f13SBarry Smith   else {
2132aac34f13SBarry Smith     ierr = PetscMalloc(bs*bs*(nnz_max+1)*sizeof(PetscScalar),&values);CHKERRQ(ierr);
2133aac34f13SBarry Smith     ierr = PetscMemzero(values,bs*bs*nnz_max*sizeof(PetscScalar));CHKERRQ(ierr);
2134aac34f13SBarry Smith   }
2135aac34f13SBarry Smith 
2136aac34f13SBarry Smith   ierr = MatSetOption(B,MAT_COLUMNS_SORTED);CHKERRQ(ierr);
2137aac34f13SBarry Smith   for (i=0; i<m; i++) {
2138aac34f13SBarry Smith     ii   = i + rstart;
2139b7940d39SSatish Balay     nnz  = Ii[i+1]- Ii[i];
2140b7940d39SSatish Balay     ierr = MatSetValuesBlocked_MPIBAIJ(B,1,&ii,nnz,J+Ii[i],values+(v ? Ii[i] : 0),INSERT_VALUES);CHKERRQ(ierr);
2141aac34f13SBarry Smith   }
2142aac34f13SBarry Smith   ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
2143aac34f13SBarry Smith   ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
2144aac34f13SBarry Smith   ierr = MatSetOption(B,MAT_COLUMNS_UNSORTED);CHKERRQ(ierr);
2145aac34f13SBarry Smith 
2146aac34f13SBarry Smith   if (!v) {
2147aac34f13SBarry Smith     ierr = PetscFree(values);CHKERRQ(ierr);
2148aac34f13SBarry Smith   }
2149aac34f13SBarry Smith   PetscFunctionReturn(0);
2150aac34f13SBarry Smith }
2151aac34f13SBarry Smith 
2152aac34f13SBarry Smith #undef __FUNCT__
2153aac34f13SBarry Smith #define __FUNCT__ "MatMPIBAIJSetPreallocationCSR"
2154aac34f13SBarry Smith /*@C
2155aac34f13SBarry Smith    MatMPIBAIJSetPreallocationCSR - Allocates memory for a sparse parallel matrix in AIJ format
2156aac34f13SBarry Smith    (the default parallel PETSc format).
2157aac34f13SBarry Smith 
2158aac34f13SBarry Smith    Collective on MPI_Comm
2159aac34f13SBarry Smith 
2160aac34f13SBarry Smith    Input Parameters:
2161aac34f13SBarry Smith +  A - the matrix
2162aac34f13SBarry Smith .  i - the indices into j for the start of each local row (starts with zero)
2163aac34f13SBarry Smith .  j - the column indices for each local row (starts with zero) these must be sorted for each row
2164aac34f13SBarry Smith -  v - optional values in the matrix
2165aac34f13SBarry Smith 
2166aac34f13SBarry Smith    Level: developer
2167aac34f13SBarry Smith 
2168aac34f13SBarry Smith .keywords: matrix, aij, compressed row, sparse, parallel
2169aac34f13SBarry Smith 
2170aac34f13SBarry Smith .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatMPIBAIJSetPreallocation(), MatCreateMPIAIJ(), MPIAIJ
2171aac34f13SBarry Smith @*/
2172be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPIBAIJSetPreallocationCSR(Mat B,PetscInt bs,const PetscInt i[],const PetscInt j[], const PetscScalar v[])
2173aac34f13SBarry Smith {
2174aac34f13SBarry Smith   PetscErrorCode ierr,(*f)(Mat,PetscInt,const PetscInt[],const PetscInt[],const PetscScalar[]);
2175aac34f13SBarry Smith 
2176aac34f13SBarry Smith   PetscFunctionBegin;
2177aac34f13SBarry Smith   ierr = PetscObjectQueryFunction((PetscObject)B,"MatMPIBAIJSetPreallocationCSR_C",(void (**)(void))&f);CHKERRQ(ierr);
2178aac34f13SBarry Smith   if (f) {
2179aac34f13SBarry Smith     ierr = (*f)(B,bs,i,j,v);CHKERRQ(ierr);
2180aac34f13SBarry Smith   }
2181aac34f13SBarry Smith   PetscFunctionReturn(0);
2182aac34f13SBarry Smith }
2183aac34f13SBarry Smith 
2184d94109b8SHong Zhang EXTERN_C_BEGIN
21854a2ae208SSatish Balay #undef __FUNCT__
2186a23d5eceSKris Buschelman #define __FUNCT__ "MatMPIBAIJSetPreallocation_MPIBAIJ"
2187be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPIBAIJSetPreallocation_MPIBAIJ(Mat B,PetscInt bs,PetscInt d_nz,PetscInt *d_nnz,PetscInt o_nz,PetscInt *o_nnz)
2188a23d5eceSKris Buschelman {
2189a23d5eceSKris Buschelman   Mat_MPIBAIJ    *b;
2190dfbe8321SBarry Smith   PetscErrorCode ierr;
2191b24ad042SBarry Smith   PetscInt       i;
2192a23d5eceSKris Buschelman 
2193a23d5eceSKris Buschelman   PetscFunctionBegin;
2194a23d5eceSKris Buschelman   B->preallocated = PETSC_TRUE;
21958c07d4e3SBarry Smith   ierr = PetscOptionsBegin(B->comm,B->prefix,"Options for MPIBAIJ matrix","Mat");CHKERRQ(ierr);
21968c07d4e3SBarry Smith     ierr = PetscOptionsInt("-mat_block_size","Set the blocksize used to store the matrix","MatMPIBAIJSetPreallocation",bs,&bs,PETSC_NULL);CHKERRQ(ierr);
21978c07d4e3SBarry Smith   ierr = PetscOptionsEnd();CHKERRQ(ierr);
2198a23d5eceSKris Buschelman 
2199a23d5eceSKris Buschelman   if (bs < 1) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Invalid block size specified, must be positive");
2200a23d5eceSKris Buschelman   if (d_nz == PETSC_DEFAULT || d_nz == PETSC_DECIDE) d_nz = 5;
2201a23d5eceSKris Buschelman   if (o_nz == PETSC_DEFAULT || o_nz == PETSC_DECIDE) o_nz = 2;
220277431f27SBarry Smith   if (d_nz < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"d_nz cannot be less than 0: value %D",d_nz);
220377431f27SBarry Smith   if (o_nz < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"o_nz cannot be less than 0: value %D",o_nz);
2204899cda47SBarry Smith 
2205899cda47SBarry Smith   B->rmap.bs  = bs;
2206899cda47SBarry Smith   B->cmap.bs  = bs;
22076148ca0dSBarry Smith   ierr = PetscMapSetUp(&B->rmap);CHKERRQ(ierr);
22086148ca0dSBarry Smith   ierr = PetscMapSetUp(&B->cmap);CHKERRQ(ierr);
2209899cda47SBarry Smith 
2210a23d5eceSKris Buschelman   if (d_nnz) {
2211899cda47SBarry Smith     for (i=0; i<B->rmap.n/bs; i++) {
221277431f27SBarry Smith       if (d_nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"d_nnz cannot be less than -1: local row %D value %D",i,d_nnz[i]);
2213a23d5eceSKris Buschelman     }
2214a23d5eceSKris Buschelman   }
2215a23d5eceSKris Buschelman   if (o_nnz) {
2216899cda47SBarry Smith     for (i=0; i<B->rmap.n/bs; i++) {
221777431f27SBarry Smith       if (o_nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"o_nnz cannot be less than -1: local row %D value %D",i,o_nnz[i]);
2218a23d5eceSKris Buschelman     }
2219a23d5eceSKris Buschelman   }
2220a23d5eceSKris Buschelman 
2221a23d5eceSKris Buschelman   b = (Mat_MPIBAIJ*)B->data;
2222a23d5eceSKris Buschelman   b->bs2 = bs*bs;
2223899cda47SBarry Smith   b->mbs = B->rmap.n/bs;
2224899cda47SBarry Smith   b->nbs = B->cmap.n/bs;
2225899cda47SBarry Smith   b->Mbs = B->rmap.N/bs;
2226899cda47SBarry Smith   b->Nbs = B->cmap.N/bs;
2227a23d5eceSKris Buschelman 
2228a23d5eceSKris Buschelman   for (i=0; i<=b->size; i++) {
2229899cda47SBarry Smith     b->rangebs[i] = B->rmap.range[i]/bs;
2230a23d5eceSKris Buschelman   }
2231899cda47SBarry Smith   b->rstartbs = B->rmap.rstart/bs;
2232899cda47SBarry Smith   b->rendbs   = B->rmap.rend/bs;
2233899cda47SBarry Smith   b->cstartbs = B->cmap.rstart/bs;
2234899cda47SBarry Smith   b->cendbs   = B->cmap.rend/bs;
2235a23d5eceSKris Buschelman 
2236f69a0ea3SMatthew Knepley   ierr = MatCreate(PETSC_COMM_SELF,&b->A);CHKERRQ(ierr);
2237899cda47SBarry Smith   ierr = MatSetSizes(b->A,B->rmap.n,B->cmap.n,B->rmap.n,B->cmap.n);CHKERRQ(ierr);
22389c097c71SKris Buschelman   ierr = MatSetType(b->A,MATSEQBAIJ);CHKERRQ(ierr);
2239c60e587dSKris Buschelman   ierr = MatSeqBAIJSetPreallocation(b->A,bs,d_nz,d_nnz);CHKERRQ(ierr);
224052e6d16bSBarry Smith   ierr = PetscLogObjectParent(B,b->A);CHKERRQ(ierr);
2241f69a0ea3SMatthew Knepley   ierr = MatCreate(PETSC_COMM_SELF,&b->B);CHKERRQ(ierr);
2242899cda47SBarry Smith   ierr = MatSetSizes(b->B,B->rmap.n,B->cmap.N,B->rmap.n,B->cmap.N);CHKERRQ(ierr);
22439c097c71SKris Buschelman   ierr = MatSetType(b->B,MATSEQBAIJ);CHKERRQ(ierr);
2244c60e587dSKris Buschelman   ierr = MatSeqBAIJSetPreallocation(b->B,bs,o_nz,o_nnz);CHKERRQ(ierr);
224552e6d16bSBarry Smith   ierr = PetscLogObjectParent(B,b->B);CHKERRQ(ierr);
2246c60e587dSKris Buschelman 
2247a23d5eceSKris Buschelman   ierr = MatStashCreate_Private(B->comm,bs,&B->bstash);CHKERRQ(ierr);
2248a23d5eceSKris Buschelman 
2249a23d5eceSKris Buschelman   PetscFunctionReturn(0);
2250a23d5eceSKris Buschelman }
2251a23d5eceSKris Buschelman EXTERN_C_END
2252a23d5eceSKris Buschelman 
2253a23d5eceSKris Buschelman EXTERN_C_BEGIN
2254be1d678aSKris Buschelman EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatDiagonalScaleLocal_MPIBAIJ(Mat,Vec);
2255be1d678aSKris Buschelman EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatSetHashTableFactor_MPIBAIJ(Mat,PetscReal);
225692b32695SKris Buschelman EXTERN_C_END
22575bf65638SKris Buschelman 
22580bad9183SKris Buschelman /*MC
2259fafad747SKris Buschelman    MATMPIBAIJ - MATMPIBAIJ = "mpibaij" - A matrix type to be used for distributed block sparse matrices.
22600bad9183SKris Buschelman 
22610bad9183SKris Buschelman    Options Database Keys:
22628c07d4e3SBarry Smith + -mat_type mpibaij - sets the matrix type to "mpibaij" during a call to MatSetFromOptions()
22638c07d4e3SBarry Smith . -mat_block_size <bs> - set the blocksize used to store the matrix
22648c07d4e3SBarry Smith - -mat_use_hash_table <fact>
22650bad9183SKris Buschelman 
22660bad9183SKris Buschelman   Level: beginner
22670bad9183SKris Buschelman 
22680bad9183SKris Buschelman .seealso: MatCreateMPIBAIJ
22690bad9183SKris Buschelman M*/
22700bad9183SKris Buschelman 
227192b32695SKris Buschelman EXTERN_C_BEGIN
2272a23d5eceSKris Buschelman #undef __FUNCT__
22734a2ae208SSatish Balay #define __FUNCT__ "MatCreate_MPIBAIJ"
2274be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreate_MPIBAIJ(Mat B)
2275273d9f13SBarry Smith {
2276273d9f13SBarry Smith   Mat_MPIBAIJ    *b;
2277dfbe8321SBarry Smith   PetscErrorCode ierr;
2278273d9f13SBarry Smith   PetscTruth     flg;
2279273d9f13SBarry Smith 
2280273d9f13SBarry Smith   PetscFunctionBegin;
228138f2d2fdSLisandro Dalcin   ierr = PetscNewLog(B,Mat_MPIBAIJ,&b);CHKERRQ(ierr);
228282502324SSatish Balay   B->data = (void*)b;
228382502324SSatish Balay 
2284085a36d4SBarry Smith 
2285273d9f13SBarry Smith   ierr    = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr);
2286273d9f13SBarry Smith   B->mapping    = 0;
2287273d9f13SBarry Smith   B->factor     = 0;
2288273d9f13SBarry Smith   B->assembled  = PETSC_FALSE;
2289273d9f13SBarry Smith 
2290273d9f13SBarry Smith   B->insertmode = NOT_SET_VALUES;
2291273d9f13SBarry Smith   ierr = MPI_Comm_rank(B->comm,&b->rank);CHKERRQ(ierr);
2292273d9f13SBarry Smith   ierr = MPI_Comm_size(B->comm,&b->size);CHKERRQ(ierr);
2293273d9f13SBarry Smith 
2294273d9f13SBarry Smith   /* build local table of row and column ownerships */
2295899cda47SBarry Smith   ierr = PetscMalloc((b->size+1)*sizeof(PetscInt),&b->rangebs);CHKERRQ(ierr);
2296273d9f13SBarry Smith 
2297273d9f13SBarry Smith   /* build cache for off array entries formed */
2298273d9f13SBarry Smith   ierr = MatStashCreate_Private(B->comm,1,&B->stash);CHKERRQ(ierr);
2299273d9f13SBarry Smith   b->donotstash  = PETSC_FALSE;
2300273d9f13SBarry Smith   b->colmap      = PETSC_NULL;
2301273d9f13SBarry Smith   b->garray      = PETSC_NULL;
2302273d9f13SBarry Smith   b->roworiented = PETSC_TRUE;
2303273d9f13SBarry Smith 
2304cfce73b9SSatish Balay #if defined(PETSC_USE_MAT_SINGLE)
2305273d9f13SBarry Smith   /* stuff for MatSetValues_XXX in single precision */
230664a35ccbSBarry Smith   b->setvalueslen     = 0;
2307273d9f13SBarry Smith   b->setvaluescopy    = PETSC_NULL;
2308273d9f13SBarry Smith #endif
2309273d9f13SBarry Smith 
2310273d9f13SBarry Smith   /* stuff used in block assembly */
2311273d9f13SBarry Smith   b->barray       = 0;
2312273d9f13SBarry Smith 
2313273d9f13SBarry Smith   /* stuff used for matrix vector multiply */
2314273d9f13SBarry Smith   b->lvec         = 0;
2315273d9f13SBarry Smith   b->Mvctx        = 0;
2316273d9f13SBarry Smith 
2317273d9f13SBarry Smith   /* stuff for MatGetRow() */
2318273d9f13SBarry Smith   b->rowindices   = 0;
2319273d9f13SBarry Smith   b->rowvalues    = 0;
2320273d9f13SBarry Smith   b->getrowactive = PETSC_FALSE;
2321273d9f13SBarry Smith 
2322273d9f13SBarry Smith   /* hash table stuff */
2323273d9f13SBarry Smith   b->ht           = 0;
2324273d9f13SBarry Smith   b->hd           = 0;
2325273d9f13SBarry Smith   b->ht_size      = 0;
2326273d9f13SBarry Smith   b->ht_flag      = PETSC_FALSE;
2327273d9f13SBarry Smith   b->ht_fact      = 0;
2328273d9f13SBarry Smith   b->ht_total_ct  = 0;
2329273d9f13SBarry Smith   b->ht_insert_ct = 0;
2330273d9f13SBarry Smith 
233177925062SSatish Balay   ierr = PetscOptionsBegin(B->comm,PETSC_NULL,"Options for loading MPIBAIJ matrix 1","Mat");CHKERRQ(ierr);
23328c07d4e3SBarry Smith     ierr = PetscOptionsTruth("-mat_use_hash_table","Use hash table to save memory in constructing matrix","MatSetOption",PETSC_FALSE,&flg,PETSC_NULL);CHKERRQ(ierr);
2333273d9f13SBarry Smith     if (flg) {
2334f6275e2eSBarry Smith       PetscReal fact = 1.39;
2335273d9f13SBarry Smith       ierr = MatSetOption(B,MAT_USE_HASH_TABLE);CHKERRQ(ierr);
23368c07d4e3SBarry Smith       ierr = PetscOptionsReal("-mat_use_hash_table","Use hash table factor","MatMPIBAIJSetHashTableFactor",fact,&fact,PETSC_NULL);CHKERRQ(ierr);
2337273d9f13SBarry Smith       if (fact <= 1.0) fact = 1.39;
2338273d9f13SBarry Smith       ierr = MatMPIBAIJSetHashTableFactor(B,fact);CHKERRQ(ierr);
2339ae15b995SBarry Smith       ierr = PetscInfo1(0,"Hash table Factor used %5.2f\n",fact);CHKERRQ(ierr);
2340273d9f13SBarry Smith     }
23418c07d4e3SBarry Smith   ierr = PetscOptionsEnd();CHKERRQ(ierr);
23428c07d4e3SBarry Smith 
2343273d9f13SBarry Smith   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatStoreValues_C",
2344273d9f13SBarry Smith                                      "MatStoreValues_MPIBAIJ",
2345273d9f13SBarry Smith                                      MatStoreValues_MPIBAIJ);CHKERRQ(ierr);
2346273d9f13SBarry Smith   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatRetrieveValues_C",
2347273d9f13SBarry Smith                                      "MatRetrieveValues_MPIBAIJ",
2348273d9f13SBarry Smith                                      MatRetrieveValues_MPIBAIJ);CHKERRQ(ierr);
2349273d9f13SBarry Smith   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetDiagonalBlock_C",
2350273d9f13SBarry Smith                                      "MatGetDiagonalBlock_MPIBAIJ",
2351273d9f13SBarry Smith                                      MatGetDiagonalBlock_MPIBAIJ);CHKERRQ(ierr);
2352a23d5eceSKris Buschelman   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatMPIBAIJSetPreallocation_C",
2353a23d5eceSKris Buschelman                                      "MatMPIBAIJSetPreallocation_MPIBAIJ",
2354a23d5eceSKris Buschelman                                      MatMPIBAIJSetPreallocation_MPIBAIJ);CHKERRQ(ierr);
2355aac34f13SBarry Smith   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatMPIBAIJSetPreallocationCSR_C",
235644ec7894SLisandro Dalcin 				     "MatMPIBAIJSetPreallocationCSR_MPIBAIJ",
2357aac34f13SBarry Smith 				     MatMPIBAIJSetPreallocationCSR_MPIBAIJ);CHKERRQ(ierr);
235892b32695SKris Buschelman   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatDiagonalScaleLocal_C",
235992b32695SKris Buschelman                                      "MatDiagonalScaleLocal_MPIBAIJ",
236092b32695SKris Buschelman                                      MatDiagonalScaleLocal_MPIBAIJ);CHKERRQ(ierr);
23615bf65638SKris Buschelman   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatSetHashTableFactor_C",
23625bf65638SKris Buschelman                                      "MatSetHashTableFactor_MPIBAIJ",
23635bf65638SKris Buschelman                                      MatSetHashTableFactor_MPIBAIJ);CHKERRQ(ierr);
236417667f90SBarry Smith   ierr = PetscObjectChangeTypeName((PetscObject)B,MATMPIBAIJ);CHKERRQ(ierr);
2365273d9f13SBarry Smith   PetscFunctionReturn(0);
2366273d9f13SBarry Smith }
2367273d9f13SBarry Smith EXTERN_C_END
2368273d9f13SBarry Smith 
2369209238afSKris Buschelman /*MC
2370002d173eSKris Buschelman    MATBAIJ - MATBAIJ = "baij" - A matrix type to be used for block sparse matrices.
2371209238afSKris Buschelman 
2372209238afSKris Buschelman    This matrix type is identical to MATSEQBAIJ when constructed with a single process communicator,
2373209238afSKris Buschelman    and MATMPIBAIJ otherwise.
2374209238afSKris Buschelman 
2375209238afSKris Buschelman    Options Database Keys:
2376209238afSKris Buschelman . -mat_type baij - sets the matrix type to "baij" during a call to MatSetFromOptions()
2377209238afSKris Buschelman 
2378209238afSKris Buschelman   Level: beginner
2379209238afSKris Buschelman 
2380aac34f13SBarry Smith .seealso: MatCreateMPIBAIJ(),MATSEQBAIJ,MATMPIBAIJ, MatMPIBAIJSetPreallocation(), MatMPIBAIJSetPreallocationCSR()
2381209238afSKris Buschelman M*/
2382209238afSKris Buschelman 
2383209238afSKris Buschelman EXTERN_C_BEGIN
2384209238afSKris Buschelman #undef __FUNCT__
2385209238afSKris Buschelman #define __FUNCT__ "MatCreate_BAIJ"
2386be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreate_BAIJ(Mat A)
2387dfbe8321SBarry Smith {
23886849ba73SBarry Smith   PetscErrorCode ierr;
2389b24ad042SBarry Smith   PetscMPIInt    size;
2390209238afSKris Buschelman 
2391209238afSKris Buschelman   PetscFunctionBegin;
2392209238afSKris Buschelman   ierr = MPI_Comm_size(A->comm,&size);CHKERRQ(ierr);
2393209238afSKris Buschelman   if (size == 1) {
2394209238afSKris Buschelman     ierr = MatSetType(A,MATSEQBAIJ);CHKERRQ(ierr);
2395209238afSKris Buschelman   } else {
2396209238afSKris Buschelman     ierr = MatSetType(A,MATMPIBAIJ);CHKERRQ(ierr);
2397209238afSKris Buschelman   }
2398209238afSKris Buschelman   PetscFunctionReturn(0);
2399209238afSKris Buschelman }
2400209238afSKris Buschelman EXTERN_C_END
2401209238afSKris Buschelman 
24024a2ae208SSatish Balay #undef __FUNCT__
24034a2ae208SSatish Balay #define __FUNCT__ "MatMPIBAIJSetPreallocation"
2404273d9f13SBarry Smith /*@C
2405aac34f13SBarry Smith    MatMPIBAIJSetPreallocation - Allocates memory for a sparse parallel matrix in block AIJ format
2406273d9f13SBarry Smith    (block compressed row).  For good matrix assembly performance
2407273d9f13SBarry Smith    the user should preallocate the matrix storage by setting the parameters
2408273d9f13SBarry Smith    d_nz (or d_nnz) and o_nz (or o_nnz).  By setting these parameters accurately,
2409273d9f13SBarry Smith    performance can be increased by more than a factor of 50.
2410273d9f13SBarry Smith 
2411273d9f13SBarry Smith    Collective on Mat
2412273d9f13SBarry Smith 
2413273d9f13SBarry Smith    Input Parameters:
2414273d9f13SBarry Smith +  A - the matrix
2415273d9f13SBarry Smith .  bs   - size of blockk
2416273d9f13SBarry Smith .  d_nz  - number of block nonzeros per block row in diagonal portion of local
2417273d9f13SBarry Smith            submatrix  (same for all local rows)
2418273d9f13SBarry Smith .  d_nnz - array containing the number of block nonzeros in the various block rows
2419273d9f13SBarry Smith            of the in diagonal portion of the local (possibly different for each block
2420273d9f13SBarry Smith            row) or PETSC_NULL.  You must leave room for the diagonal entry even if it is zero.
2421273d9f13SBarry Smith .  o_nz  - number of block nonzeros per block row in the off-diagonal portion of local
2422273d9f13SBarry Smith            submatrix (same for all local rows).
2423273d9f13SBarry Smith -  o_nnz - array containing the number of nonzeros in the various block rows of the
2424273d9f13SBarry Smith            off-diagonal portion of the local submatrix (possibly different for
2425273d9f13SBarry Smith            each block row) or PETSC_NULL.
2426273d9f13SBarry Smith 
242749a6f317SBarry Smith    If the *_nnz parameter is given then the *_nz parameter is ignored
2428273d9f13SBarry Smith 
2429273d9f13SBarry Smith    Options Database Keys:
24308c07d4e3SBarry Smith +   -mat_block_size - size of the blocks to use
24318c07d4e3SBarry Smith -   -mat_use_hash_table <fact>
2432273d9f13SBarry Smith 
2433273d9f13SBarry Smith    Notes:
2434273d9f13SBarry Smith    If PETSC_DECIDE or  PETSC_DETERMINE is used for a particular argument on one processor
2435273d9f13SBarry Smith    than it must be used on all processors that share the object for that argument.
2436273d9f13SBarry Smith 
2437273d9f13SBarry Smith    Storage Information:
2438273d9f13SBarry Smith    For a square global matrix we define each processor's diagonal portion
2439273d9f13SBarry Smith    to be its local rows and the corresponding columns (a square submatrix);
2440273d9f13SBarry Smith    each processor's off-diagonal portion encompasses the remainder of the
2441273d9f13SBarry Smith    local matrix (a rectangular submatrix).
2442273d9f13SBarry Smith 
2443273d9f13SBarry Smith    The user can specify preallocated storage for the diagonal part of
2444273d9f13SBarry Smith    the local submatrix with either d_nz or d_nnz (not both).  Set
2445273d9f13SBarry Smith    d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic
2446273d9f13SBarry Smith    memory allocation.  Likewise, specify preallocated storage for the
2447273d9f13SBarry Smith    off-diagonal part of the local submatrix with o_nz or o_nnz (not both).
2448273d9f13SBarry Smith 
2449273d9f13SBarry Smith    Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
2450273d9f13SBarry Smith    the figure below we depict these three local rows and all columns (0-11).
2451273d9f13SBarry Smith 
2452273d9f13SBarry Smith .vb
2453273d9f13SBarry Smith            0 1 2 3 4 5 6 7 8 9 10 11
2454273d9f13SBarry Smith           -------------------
2455273d9f13SBarry Smith    row 3  |  o o o d d d o o o o o o
2456273d9f13SBarry Smith    row 4  |  o o o d d d o o o o o o
2457273d9f13SBarry Smith    row 5  |  o o o d d d o o o o o o
2458273d9f13SBarry Smith           -------------------
2459273d9f13SBarry Smith .ve
2460273d9f13SBarry Smith 
2461273d9f13SBarry Smith    Thus, any entries in the d locations are stored in the d (diagonal)
2462273d9f13SBarry Smith    submatrix, and any entries in the o locations are stored in the
2463273d9f13SBarry Smith    o (off-diagonal) submatrix.  Note that the d and the o submatrices are
2464273d9f13SBarry Smith    stored simply in the MATSEQBAIJ format for compressed row storage.
2465273d9f13SBarry Smith 
2466273d9f13SBarry Smith    Now d_nz should indicate the number of block nonzeros per row in the d matrix,
2467273d9f13SBarry Smith    and o_nz should indicate the number of block nonzeros per row in the o matrix.
2468273d9f13SBarry Smith    In general, for PDE problems in which most nonzeros are near the diagonal,
2469273d9f13SBarry Smith    one expects d_nz >> o_nz.   For large problems you MUST preallocate memory
2470273d9f13SBarry Smith    or you will get TERRIBLE performance; see the users' manual chapter on
2471273d9f13SBarry Smith    matrices.
2472273d9f13SBarry Smith 
2473273d9f13SBarry Smith    Level: intermediate
2474273d9f13SBarry Smith 
2475273d9f13SBarry Smith .keywords: matrix, block, aij, compressed row, sparse, parallel
2476273d9f13SBarry Smith 
2477aac34f13SBarry Smith .seealso: MatCreate(), MatCreateSeqBAIJ(), MatSetValues(), MatCreateMPIBAIJ(), MatMPIBAIJSetPreallocationCSR()
2478273d9f13SBarry Smith @*/
2479be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPIBAIJSetPreallocation(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[])
2480273d9f13SBarry Smith {
2481b24ad042SBarry Smith   PetscErrorCode ierr,(*f)(Mat,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[]);
2482273d9f13SBarry Smith 
2483273d9f13SBarry Smith   PetscFunctionBegin;
2484a23d5eceSKris Buschelman   ierr = PetscObjectQueryFunction((PetscObject)B,"MatMPIBAIJSetPreallocation_C",(void (**)(void))&f);CHKERRQ(ierr);
2485a23d5eceSKris Buschelman   if (f) {
2486a23d5eceSKris Buschelman     ierr = (*f)(B,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr);
2487273d9f13SBarry Smith   }
2488273d9f13SBarry Smith   PetscFunctionReturn(0);
2489273d9f13SBarry Smith }
2490273d9f13SBarry Smith 
24914a2ae208SSatish Balay #undef __FUNCT__
24924a2ae208SSatish Balay #define __FUNCT__ "MatCreateMPIBAIJ"
249379bdfe76SSatish Balay /*@C
249479bdfe76SSatish Balay    MatCreateMPIBAIJ - Creates a sparse parallel matrix in block AIJ format
249579bdfe76SSatish Balay    (block compressed row).  For good matrix assembly performance
249679bdfe76SSatish Balay    the user should preallocate the matrix storage by setting the parameters
249779bdfe76SSatish Balay    d_nz (or d_nnz) and o_nz (or o_nnz).  By setting these parameters accurately,
249879bdfe76SSatish Balay    performance can be increased by more than a factor of 50.
249979bdfe76SSatish Balay 
2500db81eaa0SLois Curfman McInnes    Collective on MPI_Comm
2501db81eaa0SLois Curfman McInnes 
250279bdfe76SSatish Balay    Input Parameters:
2503db81eaa0SLois Curfman McInnes +  comm - MPI communicator
250479bdfe76SSatish Balay .  bs   - size of blockk
250579bdfe76SSatish Balay .  m - number of local rows (or PETSC_DECIDE to have calculated if M is given)
250692e8d321SLois Curfman McInnes            This value should be the same as the local size used in creating the
250792e8d321SLois Curfman McInnes            y vector for the matrix-vector product y = Ax.
250892e8d321SLois Curfman McInnes .  n - number of local columns (or PETSC_DECIDE to have calculated if N is given)
250992e8d321SLois Curfman McInnes            This value should be the same as the local size used in creating the
251092e8d321SLois Curfman McInnes            x vector for the matrix-vector product y = Ax.
2511be79a94dSBarry Smith .  M - number of global rows (or PETSC_DETERMINE to have calculated if m is given)
2512be79a94dSBarry Smith .  N - number of global columns (or PETSC_DETERMINE to have calculated if n is given)
251347a75d0bSBarry Smith .  d_nz  - number of nonzero blocks per block row in diagonal portion of local
251479bdfe76SSatish Balay            submatrix  (same for all local rows)
251547a75d0bSBarry Smith .  d_nnz - array containing the number of nonzero blocks in the various block rows
251692e8d321SLois Curfman McInnes            of the in diagonal portion of the local (possibly different for each block
2517db81eaa0SLois Curfman McInnes            row) or PETSC_NULL.  You must leave room for the diagonal entry even if it is zero.
251847a75d0bSBarry Smith .  o_nz  - number of nonzero blocks per block row in the off-diagonal portion of local
251979bdfe76SSatish Balay            submatrix (same for all local rows).
252047a75d0bSBarry Smith -  o_nnz - array containing the number of nonzero blocks in the various block rows of the
252192e8d321SLois Curfman McInnes            off-diagonal portion of the local submatrix (possibly different for
252292e8d321SLois Curfman McInnes            each block row) or PETSC_NULL.
252379bdfe76SSatish Balay 
252479bdfe76SSatish Balay    Output Parameter:
252579bdfe76SSatish Balay .  A - the matrix
252679bdfe76SSatish Balay 
2527db81eaa0SLois Curfman McInnes    Options Database Keys:
25288c07d4e3SBarry Smith +   -mat_block_size - size of the blocks to use
25298c07d4e3SBarry Smith -   -mat_use_hash_table <fact>
25303ffaccefSLois Curfman McInnes 
2531b259b22eSLois Curfman McInnes    Notes:
253249a6f317SBarry Smith    If the *_nnz parameter is given then the *_nz parameter is ignored
253349a6f317SBarry Smith 
253447a75d0bSBarry Smith    A nonzero block is any block that as 1 or more nonzeros in it
253547a75d0bSBarry Smith 
253679bdfe76SSatish Balay    The user MUST specify either the local or global matrix dimensions
253779bdfe76SSatish Balay    (possibly both).
253879bdfe76SSatish Balay 
2539be79a94dSBarry Smith    If PETSC_DECIDE or  PETSC_DETERMINE is used for a particular argument on one processor
2540be79a94dSBarry Smith    than it must be used on all processors that share the object for that argument.
2541be79a94dSBarry Smith 
254279bdfe76SSatish Balay    Storage Information:
254379bdfe76SSatish Balay    For a square global matrix we define each processor's diagonal portion
254479bdfe76SSatish Balay    to be its local rows and the corresponding columns (a square submatrix);
254579bdfe76SSatish Balay    each processor's off-diagonal portion encompasses the remainder of the
254679bdfe76SSatish Balay    local matrix (a rectangular submatrix).
254779bdfe76SSatish Balay 
254879bdfe76SSatish Balay    The user can specify preallocated storage for the diagonal part of
254979bdfe76SSatish Balay    the local submatrix with either d_nz or d_nnz (not both).  Set
255079bdfe76SSatish Balay    d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic
255179bdfe76SSatish Balay    memory allocation.  Likewise, specify preallocated storage for the
255279bdfe76SSatish Balay    off-diagonal part of the local submatrix with o_nz or o_nnz (not both).
255379bdfe76SSatish Balay 
255479bdfe76SSatish Balay    Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
255579bdfe76SSatish Balay    the figure below we depict these three local rows and all columns (0-11).
255679bdfe76SSatish Balay 
2557db81eaa0SLois Curfman McInnes .vb
2558db81eaa0SLois Curfman McInnes            0 1 2 3 4 5 6 7 8 9 10 11
2559db81eaa0SLois Curfman McInnes           -------------------
2560db81eaa0SLois Curfman McInnes    row 3  |  o o o d d d o o o o o o
2561db81eaa0SLois Curfman McInnes    row 4  |  o o o d d d o o o o o o
2562db81eaa0SLois Curfman McInnes    row 5  |  o o o d d d o o o o o o
2563db81eaa0SLois Curfman McInnes           -------------------
2564db81eaa0SLois Curfman McInnes .ve
256579bdfe76SSatish Balay 
256679bdfe76SSatish Balay    Thus, any entries in the d locations are stored in the d (diagonal)
256779bdfe76SSatish Balay    submatrix, and any entries in the o locations are stored in the
256879bdfe76SSatish Balay    o (off-diagonal) submatrix.  Note that the d and the o submatrices are
256957b952d6SSatish Balay    stored simply in the MATSEQBAIJ format for compressed row storage.
257079bdfe76SSatish Balay 
2571d64ed03dSBarry Smith    Now d_nz should indicate the number of block nonzeros per row in the d matrix,
2572d64ed03dSBarry Smith    and o_nz should indicate the number of block nonzeros per row in the o matrix.
257379bdfe76SSatish Balay    In general, for PDE problems in which most nonzeros are near the diagonal,
257492e8d321SLois Curfman McInnes    one expects d_nz >> o_nz.   For large problems you MUST preallocate memory
257592e8d321SLois Curfman McInnes    or you will get TERRIBLE performance; see the users' manual chapter on
25766da5968aSLois Curfman McInnes    matrices.
257779bdfe76SSatish Balay 
2578027ccd11SLois Curfman McInnes    Level: intermediate
2579027ccd11SLois Curfman McInnes 
258092e8d321SLois Curfman McInnes .keywords: matrix, block, aij, compressed row, sparse, parallel
258179bdfe76SSatish Balay 
2582aac34f13SBarry Smith .seealso: MatCreate(), MatCreateSeqBAIJ(), MatSetValues(), MatCreateMPIBAIJ(), MatMPIBAIJSetPreallocation(), MatMPIBAIJSetPreallocationCSR()
258379bdfe76SSatish Balay @*/
2584be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreateMPIBAIJ(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[],Mat *A)
258579bdfe76SSatish Balay {
25866849ba73SBarry Smith   PetscErrorCode ierr;
2587b24ad042SBarry Smith   PetscMPIInt    size;
258879bdfe76SSatish Balay 
2589d64ed03dSBarry Smith   PetscFunctionBegin;
2590f69a0ea3SMatthew Knepley   ierr = MatCreate(comm,A);CHKERRQ(ierr);
2591f69a0ea3SMatthew Knepley   ierr = MatSetSizes(*A,m,n,M,N);CHKERRQ(ierr);
2592d132466eSBarry Smith   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
2593273d9f13SBarry Smith   if (size > 1) {
2594273d9f13SBarry Smith     ierr = MatSetType(*A,MATMPIBAIJ);CHKERRQ(ierr);
2595273d9f13SBarry Smith     ierr = MatMPIBAIJSetPreallocation(*A,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr);
2596273d9f13SBarry Smith   } else {
2597273d9f13SBarry Smith     ierr = MatSetType(*A,MATSEQBAIJ);CHKERRQ(ierr);
2598273d9f13SBarry Smith     ierr = MatSeqBAIJSetPreallocation(*A,bs,d_nz,d_nnz);CHKERRQ(ierr);
25993914022bSBarry Smith   }
26003a40ed3dSBarry Smith   PetscFunctionReturn(0);
260179bdfe76SSatish Balay }
2602026e39d0SSatish Balay 
26034a2ae208SSatish Balay #undef __FUNCT__
26044a2ae208SSatish Balay #define __FUNCT__ "MatDuplicate_MPIBAIJ"
26056849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIBAIJ(Mat matin,MatDuplicateOption cpvalues,Mat *newmat)
26060ac07820SSatish Balay {
26070ac07820SSatish Balay   Mat            mat;
26080ac07820SSatish Balay   Mat_MPIBAIJ    *a,*oldmat = (Mat_MPIBAIJ*)matin->data;
2609dfbe8321SBarry Smith   PetscErrorCode ierr;
2610b24ad042SBarry Smith   PetscInt       len=0;
26110ac07820SSatish Balay 
2612d64ed03dSBarry Smith   PetscFunctionBegin;
26130ac07820SSatish Balay   *newmat       = 0;
2614f69a0ea3SMatthew Knepley   ierr = MatCreate(matin->comm,&mat);CHKERRQ(ierr);
2615899cda47SBarry Smith   ierr = MatSetSizes(mat,matin->rmap.n,matin->cmap.n,matin->rmap.N,matin->cmap.N);CHKERRQ(ierr);
2616be5d1d56SKris Buschelman   ierr = MatSetType(mat,matin->type_name);CHKERRQ(ierr);
26171d5dac46SHong Zhang   ierr = PetscMemcpy(mat->ops,matin->ops,sizeof(struct _MatOps));CHKERRQ(ierr);
26187fff6886SHong Zhang 
26194beb1cfeSHong Zhang   mat->factor       = matin->factor;
2620273d9f13SBarry Smith   mat->preallocated = PETSC_TRUE;
26210ac07820SSatish Balay   mat->assembled    = PETSC_TRUE;
26227fff6886SHong Zhang   mat->insertmode   = NOT_SET_VALUES;
26237fff6886SHong Zhang 
2624273d9f13SBarry Smith   a      = (Mat_MPIBAIJ*)mat->data;
2625899cda47SBarry Smith   mat->rmap.bs  = matin->rmap.bs;
26260ac07820SSatish Balay   a->bs2   = oldmat->bs2;
26270ac07820SSatish Balay   a->mbs   = oldmat->mbs;
26280ac07820SSatish Balay   a->nbs   = oldmat->nbs;
26290ac07820SSatish Balay   a->Mbs   = oldmat->Mbs;
26300ac07820SSatish Balay   a->Nbs   = oldmat->Nbs;
26310ac07820SSatish Balay 
2632899cda47SBarry Smith   ierr = PetscMapCopy(matin->comm,&matin->rmap,&mat->rmap);CHKERRQ(ierr);
2633899cda47SBarry Smith   ierr = PetscMapCopy(matin->comm,&matin->cmap,&mat->cmap);CHKERRQ(ierr);
2634899cda47SBarry Smith 
26350ac07820SSatish Balay   a->size         = oldmat->size;
26360ac07820SSatish Balay   a->rank         = oldmat->rank;
2637aef5e8e0SSatish Balay   a->donotstash   = oldmat->donotstash;
2638aef5e8e0SSatish Balay   a->roworiented  = oldmat->roworiented;
2639aef5e8e0SSatish Balay   a->rowindices   = 0;
26400ac07820SSatish Balay   a->rowvalues    = 0;
26410ac07820SSatish Balay   a->getrowactive = PETSC_FALSE;
264230793edcSSatish Balay   a->barray       = 0;
2643899cda47SBarry Smith   a->rstartbs     = oldmat->rstartbs;
2644899cda47SBarry Smith   a->rendbs       = oldmat->rendbs;
2645899cda47SBarry Smith   a->cstartbs     = oldmat->cstartbs;
2646899cda47SBarry Smith   a->cendbs       = oldmat->cendbs;
26470ac07820SSatish Balay 
2648133cdb44SSatish Balay   /* hash table stuff */
2649133cdb44SSatish Balay   a->ht           = 0;
2650133cdb44SSatish Balay   a->hd           = 0;
2651133cdb44SSatish Balay   a->ht_size      = 0;
2652133cdb44SSatish Balay   a->ht_flag      = oldmat->ht_flag;
265325fdafccSSatish Balay   a->ht_fact      = oldmat->ht_fact;
2654133cdb44SSatish Balay   a->ht_total_ct  = 0;
2655133cdb44SSatish Balay   a->ht_insert_ct = 0;
2656133cdb44SSatish Balay 
2657899cda47SBarry Smith   ierr = PetscMemcpy(a->rangebs,oldmat->rangebs,(a->size+1)*sizeof(PetscInt));CHKERRQ(ierr);
26588798bf22SSatish Balay   ierr = MatStashCreate_Private(matin->comm,1,&mat->stash);CHKERRQ(ierr);
2659899cda47SBarry Smith   ierr = MatStashCreate_Private(matin->comm,matin->rmap.bs,&mat->bstash);CHKERRQ(ierr);
26600ac07820SSatish Balay   if (oldmat->colmap) {
2661aa482453SBarry Smith #if defined (PETSC_USE_CTABLE)
26620f5bd95cSBarry Smith   ierr = PetscTableCreateCopy(oldmat->colmap,&a->colmap);CHKERRQ(ierr);
266348e59246SSatish Balay #else
2664b24ad042SBarry Smith   ierr = PetscMalloc((a->Nbs)*sizeof(PetscInt),&a->colmap);CHKERRQ(ierr);
266552e6d16bSBarry Smith   ierr = PetscLogObjectMemory(mat,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr);
2666b24ad042SBarry Smith   ierr = PetscMemcpy(a->colmap,oldmat->colmap,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr);
266748e59246SSatish Balay #endif
26680ac07820SSatish Balay   } else a->colmap = 0;
26694beb1cfeSHong Zhang 
26700ac07820SSatish Balay   if (oldmat->garray && (len = ((Mat_SeqBAIJ*)(oldmat->B->data))->nbs)) {
2671b24ad042SBarry Smith     ierr = PetscMalloc(len*sizeof(PetscInt),&a->garray);CHKERRQ(ierr);
267252e6d16bSBarry Smith     ierr = PetscLogObjectMemory(mat,len*sizeof(PetscInt));CHKERRQ(ierr);
2673b24ad042SBarry Smith     ierr = PetscMemcpy(a->garray,oldmat->garray,len*sizeof(PetscInt));CHKERRQ(ierr);
26740ac07820SSatish Balay   } else a->garray = 0;
26750ac07820SSatish Balay 
26760ac07820SSatish Balay   ierr = VecDuplicate(oldmat->lvec,&a->lvec);CHKERRQ(ierr);
267752e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->lvec);CHKERRQ(ierr);
26780ac07820SSatish Balay   ierr = VecScatterCopy(oldmat->Mvctx,&a->Mvctx);CHKERRQ(ierr);
267952e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->Mvctx);CHKERRQ(ierr);
26807fff6886SHong Zhang 
26812e8a6d31SBarry Smith   ierr =  MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr);
268252e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->A);CHKERRQ(ierr);
26832e8a6d31SBarry Smith   ierr =  MatDuplicate(oldmat->B,cpvalues,&a->B);CHKERRQ(ierr);
268452e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->B);CHKERRQ(ierr);
2685b0a32e0cSBarry Smith   ierr = PetscFListDuplicate(matin->qlist,&mat->qlist);CHKERRQ(ierr);
26860ac07820SSatish Balay   *newmat = mat;
26874beb1cfeSHong Zhang 
26883a40ed3dSBarry Smith   PetscFunctionReturn(0);
26890ac07820SSatish Balay }
269057b952d6SSatish Balay 
2691e090d566SSatish Balay #include "petscsys.h"
269257b952d6SSatish Balay 
26934a2ae208SSatish Balay #undef __FUNCT__
26944a2ae208SSatish Balay #define __FUNCT__ "MatLoad_MPIBAIJ"
2695f69a0ea3SMatthew Knepley PetscErrorCode MatLoad_MPIBAIJ(PetscViewer viewer, MatType type,Mat *newmat)
269657b952d6SSatish Balay {
269757b952d6SSatish Balay   Mat            A;
26986849ba73SBarry Smith   PetscErrorCode ierr;
2699b24ad042SBarry Smith   int            fd;
2700b24ad042SBarry Smith   PetscInt       i,nz,j,rstart,rend;
270187828ca2SBarry Smith   PetscScalar    *vals,*buf;
270257b952d6SSatish Balay   MPI_Comm       comm = ((PetscObject)viewer)->comm;
270357b952d6SSatish Balay   MPI_Status     status;
2704b24ad042SBarry Smith   PetscMPIInt    rank,size,maxnz;
2705b24ad042SBarry Smith   PetscInt       header[4],*rowlengths = 0,M,N,m,*rowners,*cols;
2706910ba992SMatthew Knepley   PetscInt       *locrowlens = PETSC_NULL,*procsnz = PETSC_NULL,*browners = PETSC_NULL;
2707167e7480SBarry Smith   PetscInt       jj,*mycols,*ibuf,bs=1,Mbs,mbs,extra_rows,mmax;
2708dc231df0SBarry Smith   PetscMPIInt    tag = ((PetscObject)viewer)->tag;
2709910ba992SMatthew Knepley   PetscInt       *dlens = PETSC_NULL,*odlens = PETSC_NULL,*mask = PETSC_NULL,*masked1 = PETSC_NULL,*masked2 = PETSC_NULL,rowcount,odcount;
2710dc231df0SBarry Smith   PetscInt       dcount,kmax,k,nzcount,tmp,mend;
271157b952d6SSatish Balay 
2712d64ed03dSBarry Smith   PetscFunctionBegin;
271377925062SSatish Balay   ierr = PetscOptionsBegin(comm,PETSC_NULL,"Options for loading MPIBAIJ matrix 2","Mat");CHKERRQ(ierr);
27148c07d4e3SBarry Smith     ierr = PetscOptionsInt("-matload_block_size","Set the blocksize used to store the matrix","MatLoad",bs,&bs,PETSC_NULL);CHKERRQ(ierr);
27158c07d4e3SBarry Smith   ierr = PetscOptionsEnd();CHKERRQ(ierr);
271657b952d6SSatish Balay 
2717d132466eSBarry Smith   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
2718d132466eSBarry Smith   ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr);
271957b952d6SSatish Balay   if (!rank) {
2720b0a32e0cSBarry Smith     ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr);
2721e5638eb3SBarry Smith     ierr = PetscBinaryRead(fd,(char *)header,4,PETSC_INT);CHKERRQ(ierr);
2722552e946dSBarry Smith     if (header[0] != MAT_FILE_COOKIE) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"not matrix object");
27236c5fab8fSBarry Smith   }
2724d64ed03dSBarry Smith 
2725b24ad042SBarry Smith   ierr = MPI_Bcast(header+1,3,MPIU_INT,0,comm);CHKERRQ(ierr);
272657b952d6SSatish Balay   M = header[1]; N = header[2];
272757b952d6SSatish Balay 
272829bbc08cSBarry Smith   if (M != N) SETERRQ(PETSC_ERR_SUP,"Can only do square matrices");
272957b952d6SSatish Balay 
273057b952d6SSatish Balay   /*
273157b952d6SSatish Balay      This code adds extra rows to make sure the number of rows is
273257b952d6SSatish Balay      divisible by the blocksize
273357b952d6SSatish Balay   */
273457b952d6SSatish Balay   Mbs        = M/bs;
2735dc231df0SBarry Smith   extra_rows = bs - M + bs*Mbs;
273657b952d6SSatish Balay   if (extra_rows == bs) extra_rows = 0;
273757b952d6SSatish Balay   else                  Mbs++;
273857b952d6SSatish Balay   if (extra_rows && !rank) {
2739ae15b995SBarry Smith     ierr = PetscInfo(0,"Padding loaded matrix to match blocksize\n");CHKERRQ(ierr);
274057b952d6SSatish Balay   }
2741537820f0SBarry Smith 
274257b952d6SSatish Balay   /* determine ownership of all rows */
274357b952d6SSatish Balay   mbs        = Mbs/size + ((Mbs % size) > rank);
274457b952d6SSatish Balay   m          = mbs*bs;
2745dc231df0SBarry Smith   ierr       = PetscMalloc2(size+1,PetscInt,&rowners,size+1,PetscInt,&browners);CHKERRQ(ierr);
2746b24ad042SBarry Smith   ierr       = MPI_Allgather(&mbs,1,MPIU_INT,rowners+1,1,MPIU_INT,comm);CHKERRQ(ierr);
2747167e7480SBarry Smith 
2748167e7480SBarry Smith   /* process 0 needs enough room for process with most rows */
2749167e7480SBarry Smith   if (!rank) {
2750167e7480SBarry Smith     mmax = rowners[1];
2751167e7480SBarry Smith     for (i=2; i<size; i++) {
2752167e7480SBarry Smith       mmax = PetscMax(mmax,rowners[i]);
2753167e7480SBarry Smith     }
2754ca02efcfSSatish Balay     mmax*=bs;
2755167e7480SBarry Smith   } else mmax = m;
2756167e7480SBarry Smith 
275757b952d6SSatish Balay   rowners[0] = 0;
2758cee3aa6bSSatish Balay   for (i=2; i<=size; i++)  rowners[i] += rowners[i-1];
2759cee3aa6bSSatish Balay   for (i=0; i<=size;  i++) browners[i] = rowners[i]*bs;
276057b952d6SSatish Balay   rstart = rowners[rank];
276157b952d6SSatish Balay   rend   = rowners[rank+1];
276257b952d6SSatish Balay 
276357b952d6SSatish Balay   /* distribute row lengths to all processors */
276419c38ff2SBarry Smith   ierr = PetscMalloc((mmax+1)*sizeof(PetscInt),&locrowlens);CHKERRQ(ierr);
276557b952d6SSatish Balay   if (!rank) {
2766dc231df0SBarry Smith     mend = m;
2767dc231df0SBarry Smith     if (size == 1) mend = mend - extra_rows;
2768dc231df0SBarry Smith     ierr = PetscBinaryRead(fd,locrowlens,mend,PETSC_INT);CHKERRQ(ierr);
2769dc231df0SBarry Smith     for (j=mend; j<m; j++) locrowlens[j] = 1;
2770dc231df0SBarry Smith     ierr = PetscMalloc(m*sizeof(PetscInt),&rowlengths);CHKERRQ(ierr);
2771b24ad042SBarry Smith     ierr = PetscMalloc(size*sizeof(PetscInt),&procsnz);CHKERRQ(ierr);
2772b24ad042SBarry Smith     ierr = PetscMemzero(procsnz,size*sizeof(PetscInt));CHKERRQ(ierr);
2773dc231df0SBarry Smith     for (j=0; j<m; j++) {
2774dc231df0SBarry Smith       procsnz[0] += locrowlens[j];
2775dc231df0SBarry Smith     }
2776dc231df0SBarry Smith     for (i=1; i<size; i++) {
2777dc231df0SBarry Smith       mend = browners[i+1] - browners[i];
2778dc231df0SBarry Smith       if (i == size-1) mend = mend - extra_rows;
2779dc231df0SBarry Smith       ierr = PetscBinaryRead(fd,rowlengths,mend,PETSC_INT);CHKERRQ(ierr);
2780dc231df0SBarry Smith       for (j=mend; j<browners[i+1] - browners[i]; j++) rowlengths[j] = 1;
2781dc231df0SBarry Smith       /* calculate the number of nonzeros on each processor */
2782dc231df0SBarry Smith       for (j=0; j<browners[i+1]-browners[i]; j++) {
278357b952d6SSatish Balay         procsnz[i] += rowlengths[j];
278457b952d6SSatish Balay       }
2785dc231df0SBarry Smith       ierr = MPI_Send(rowlengths,browners[i+1]-browners[i],MPIU_INT,i,tag,comm);CHKERRQ(ierr);
278657b952d6SSatish Balay     }
2787606d414cSSatish Balay     ierr = PetscFree(rowlengths);CHKERRQ(ierr);
2788dc231df0SBarry Smith   } else {
2789dc231df0SBarry Smith     ierr = MPI_Recv(locrowlens,m,MPIU_INT,0,tag,comm,&status);CHKERRQ(ierr);
2790dc231df0SBarry Smith   }
279157b952d6SSatish Balay 
2792dc231df0SBarry Smith   if (!rank) {
279357b952d6SSatish Balay     /* determine max buffer needed and allocate it */
27948a8e0b3aSBarry Smith     maxnz = procsnz[0];
2795cdc0ba36SBarry Smith     for (i=1; i<size; i++) {
279657b952d6SSatish Balay       maxnz = PetscMax(maxnz,procsnz[i]);
279757b952d6SSatish Balay     }
2798b24ad042SBarry Smith     ierr = PetscMalloc(maxnz*sizeof(PetscInt),&cols);CHKERRQ(ierr);
279957b952d6SSatish Balay 
280057b952d6SSatish Balay     /* read in my part of the matrix column indices  */
280157b952d6SSatish Balay     nz     = procsnz[0];
280219c38ff2SBarry Smith     ierr   = PetscMalloc((nz+1)*sizeof(PetscInt),&ibuf);CHKERRQ(ierr);
280357b952d6SSatish Balay     mycols = ibuf;
2804cee3aa6bSSatish Balay     if (size == 1)  nz -= extra_rows;
2805e5638eb3SBarry Smith     ierr = PetscBinaryRead(fd,mycols,nz,PETSC_INT);CHKERRQ(ierr);
2806cee3aa6bSSatish Balay     if (size == 1)  for (i=0; i< extra_rows; i++) { mycols[nz+i] = M+i; }
2807cee3aa6bSSatish Balay 
280857b952d6SSatish Balay     /* read in every ones (except the last) and ship off */
280957b952d6SSatish Balay     for (i=1; i<size-1; i++) {
281057b952d6SSatish Balay       nz   = procsnz[i];
2811e5638eb3SBarry Smith       ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr);
2812b24ad042SBarry Smith       ierr = MPI_Send(cols,nz,MPIU_INT,i,tag,comm);CHKERRQ(ierr);
281357b952d6SSatish Balay     }
281457b952d6SSatish Balay     /* read in the stuff for the last proc */
281557b952d6SSatish Balay     if (size != 1) {
281657b952d6SSatish Balay       nz   = procsnz[size-1] - extra_rows;  /* the extra rows are not on the disk */
2817e5638eb3SBarry Smith       ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr);
281857b952d6SSatish Balay       for (i=0; i<extra_rows; i++) cols[nz+i] = M+i;
2819b24ad042SBarry Smith       ierr = MPI_Send(cols,nz+extra_rows,MPIU_INT,size-1,tag,comm);CHKERRQ(ierr);
282057b952d6SSatish Balay     }
2821606d414cSSatish Balay     ierr = PetscFree(cols);CHKERRQ(ierr);
2822d64ed03dSBarry Smith   } else {
282357b952d6SSatish Balay     /* determine buffer space needed for message */
282457b952d6SSatish Balay     nz = 0;
282557b952d6SSatish Balay     for (i=0; i<m; i++) {
282657b952d6SSatish Balay       nz += locrowlens[i];
282757b952d6SSatish Balay     }
282819c38ff2SBarry Smith     ierr   = PetscMalloc((nz+1)*sizeof(PetscInt),&ibuf);CHKERRQ(ierr);
282957b952d6SSatish Balay     mycols = ibuf;
283057b952d6SSatish Balay     /* receive message of column indices*/
2831b24ad042SBarry Smith     ierr = MPI_Recv(mycols,nz,MPIU_INT,0,tag,comm,&status);CHKERRQ(ierr);
2832b24ad042SBarry Smith     ierr = MPI_Get_count(&status,MPIU_INT,&maxnz);CHKERRQ(ierr);
283329bbc08cSBarry Smith     if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file");
283457b952d6SSatish Balay   }
283557b952d6SSatish Balay 
283657b952d6SSatish Balay   /* loop over local rows, determining number of off diagonal entries */
2837dc231df0SBarry Smith   ierr     = PetscMalloc2(rend-rstart,PetscInt,&dlens,rend-rstart,PetscInt,&odlens);CHKERRQ(ierr);
2838dc231df0SBarry Smith   ierr     = PetscMalloc3(Mbs,PetscInt,&mask,Mbs,PetscInt,&masked1,Mbs,PetscInt,&masked2);CHKERRQ(ierr);
2839dc231df0SBarry Smith   ierr     = PetscMemzero(mask,Mbs*sizeof(PetscInt));CHKERRQ(ierr);
2840dc231df0SBarry Smith   ierr     = PetscMemzero(masked1,Mbs*sizeof(PetscInt));CHKERRQ(ierr);
2841dc231df0SBarry Smith   ierr     = PetscMemzero(masked2,Mbs*sizeof(PetscInt));CHKERRQ(ierr);
284257b952d6SSatish Balay   rowcount = 0; nzcount = 0;
284357b952d6SSatish Balay   for (i=0; i<mbs; i++) {
284457b952d6SSatish Balay     dcount  = 0;
284557b952d6SSatish Balay     odcount = 0;
284657b952d6SSatish Balay     for (j=0; j<bs; j++) {
284757b952d6SSatish Balay       kmax = locrowlens[rowcount];
284857b952d6SSatish Balay       for (k=0; k<kmax; k++) {
284957b952d6SSatish Balay         tmp = mycols[nzcount++]/bs;
285057b952d6SSatish Balay         if (!mask[tmp]) {
285157b952d6SSatish Balay           mask[tmp] = 1;
285257b952d6SSatish Balay           if (tmp < rstart || tmp >= rend) masked2[odcount++] = tmp;
285357b952d6SSatish Balay           else masked1[dcount++] = tmp;
285457b952d6SSatish Balay         }
285557b952d6SSatish Balay       }
285657b952d6SSatish Balay       rowcount++;
285757b952d6SSatish Balay     }
2858cee3aa6bSSatish Balay 
285957b952d6SSatish Balay     dlens[i]  = dcount;
286057b952d6SSatish Balay     odlens[i] = odcount;
2861cee3aa6bSSatish Balay 
286257b952d6SSatish Balay     /* zero out the mask elements we set */
286357b952d6SSatish Balay     for (j=0; j<dcount; j++) mask[masked1[j]] = 0;
286457b952d6SSatish Balay     for (j=0; j<odcount; j++) mask[masked2[j]] = 0;
286557b952d6SSatish Balay   }
2866cee3aa6bSSatish Balay 
286757b952d6SSatish Balay   /* create our matrix */
2868f69a0ea3SMatthew Knepley   ierr = MatCreate(comm,&A);CHKERRQ(ierr);
2869f69a0ea3SMatthew Knepley   ierr = MatSetSizes(A,m,m,M+extra_rows,N+extra_rows);CHKERRQ(ierr);
287078ae41b4SKris Buschelman   ierr = MatSetType(A,type);CHKERRQ(ierr)
287178ae41b4SKris Buschelman   ierr = MatMPIBAIJSetPreallocation(A,bs,0,dlens,0,odlens);CHKERRQ(ierr);
287278ae41b4SKris Buschelman 
287378ae41b4SKris Buschelman   /* Why doesn't this called using ierr = MatSetOption(A,MAT_COLUMNS_SORTED);CHKERRQ(ierr); */
2874dc231df0SBarry Smith   ierr = MatSetOption(A,MAT_COLUMNS_SORTED);CHKERRQ(ierr);
287557b952d6SSatish Balay 
287657b952d6SSatish Balay   if (!rank) {
287719c38ff2SBarry Smith     ierr = PetscMalloc((maxnz+1)*sizeof(PetscScalar),&buf);CHKERRQ(ierr);
287857b952d6SSatish Balay     /* read in my part of the matrix numerical values  */
287957b952d6SSatish Balay     nz = procsnz[0];
288057b952d6SSatish Balay     vals = buf;
2881cee3aa6bSSatish Balay     mycols = ibuf;
2882cee3aa6bSSatish Balay     if (size == 1)  nz -= extra_rows;
2883e5638eb3SBarry Smith     ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
2884cee3aa6bSSatish Balay     if (size == 1)  for (i=0; i< extra_rows; i++) { vals[nz+i] = 1.0; }
2885537820f0SBarry Smith 
288657b952d6SSatish Balay     /* insert into matrix */
288757b952d6SSatish Balay     jj      = rstart*bs;
288857b952d6SSatish Balay     for (i=0; i<m; i++) {
2889dc231df0SBarry Smith       ierr = MatSetValues_MPIBAIJ(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr);
289057b952d6SSatish Balay       mycols += locrowlens[i];
289157b952d6SSatish Balay       vals   += locrowlens[i];
289257b952d6SSatish Balay       jj++;
289357b952d6SSatish Balay     }
289457b952d6SSatish Balay     /* read in other processors (except the last one) and ship out */
289557b952d6SSatish Balay     for (i=1; i<size-1; i++) {
289657b952d6SSatish Balay       nz   = procsnz[i];
289757b952d6SSatish Balay       vals = buf;
2898e5638eb3SBarry Smith       ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
2899ca161407SBarry Smith       ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,A->tag,comm);CHKERRQ(ierr);
290057b952d6SSatish Balay     }
290157b952d6SSatish Balay     /* the last proc */
290257b952d6SSatish Balay     if (size != 1){
290357b952d6SSatish Balay       nz   = procsnz[i] - extra_rows;
2904cee3aa6bSSatish Balay       vals = buf;
2905e5638eb3SBarry Smith       ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
290657b952d6SSatish Balay       for (i=0; i<extra_rows; i++) vals[nz+i] = 1.0;
2907ca161407SBarry Smith       ierr = MPI_Send(vals,nz+extra_rows,MPIU_SCALAR,size-1,A->tag,comm);CHKERRQ(ierr);
290857b952d6SSatish Balay     }
2909606d414cSSatish Balay     ierr = PetscFree(procsnz);CHKERRQ(ierr);
2910d64ed03dSBarry Smith   } else {
291157b952d6SSatish Balay     /* receive numeric values */
291219c38ff2SBarry Smith     ierr = PetscMalloc((nz+1)*sizeof(PetscScalar),&buf);CHKERRQ(ierr);
291357b952d6SSatish Balay 
291457b952d6SSatish Balay     /* receive message of values*/
291557b952d6SSatish Balay     vals   = buf;
2916cee3aa6bSSatish Balay     mycols = ibuf;
2917ca161407SBarry Smith     ierr   = MPI_Recv(vals,nz,MPIU_SCALAR,0,A->tag,comm,&status);CHKERRQ(ierr);
2918ca161407SBarry Smith     ierr   = MPI_Get_count(&status,MPIU_SCALAR,&maxnz);CHKERRQ(ierr);
291929bbc08cSBarry Smith     if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file");
292057b952d6SSatish Balay 
292157b952d6SSatish Balay     /* insert into matrix */
292257b952d6SSatish Balay     jj      = rstart*bs;
2923cee3aa6bSSatish Balay     for (i=0; i<m; i++) {
2924dc231df0SBarry Smith       ierr    = MatSetValues_MPIBAIJ(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr);
292557b952d6SSatish Balay       mycols += locrowlens[i];
292657b952d6SSatish Balay       vals   += locrowlens[i];
292757b952d6SSatish Balay       jj++;
292857b952d6SSatish Balay     }
292957b952d6SSatish Balay   }
2930606d414cSSatish Balay   ierr = PetscFree(locrowlens);CHKERRQ(ierr);
2931606d414cSSatish Balay   ierr = PetscFree(buf);CHKERRQ(ierr);
2932606d414cSSatish Balay   ierr = PetscFree(ibuf);CHKERRQ(ierr);
2933dc231df0SBarry Smith   ierr = PetscFree2(rowners,browners);CHKERRQ(ierr);
2934dc231df0SBarry Smith   ierr = PetscFree2(dlens,odlens);CHKERRQ(ierr);
2935dc231df0SBarry Smith   ierr = PetscFree3(mask,masked1,masked2);CHKERRQ(ierr);
29366d4a8577SBarry Smith   ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
29376d4a8577SBarry Smith   ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
293878ae41b4SKris Buschelman 
293978ae41b4SKris Buschelman   *newmat = A;
29403a40ed3dSBarry Smith   PetscFunctionReturn(0);
294157b952d6SSatish Balay }
294257b952d6SSatish Balay 
29434a2ae208SSatish Balay #undef __FUNCT__
29444a2ae208SSatish Balay #define __FUNCT__ "MatMPIBAIJSetHashTableFactor"
2945133cdb44SSatish Balay /*@
2946133cdb44SSatish Balay    MatMPIBAIJSetHashTableFactor - Sets the factor required to compute the size of the HashTable.
2947133cdb44SSatish Balay 
2948133cdb44SSatish Balay    Input Parameters:
2949133cdb44SSatish Balay .  mat  - the matrix
2950133cdb44SSatish Balay .  fact - factor
2951133cdb44SSatish Balay 
2952fee21e36SBarry Smith    Collective on Mat
2953fee21e36SBarry Smith 
29548c890885SBarry Smith    Level: advanced
29558c890885SBarry Smith 
2956133cdb44SSatish Balay   Notes:
29578c07d4e3SBarry Smith    This can also be set by the command line option: -mat_use_hash_table <fact>
2958133cdb44SSatish Balay 
2959133cdb44SSatish Balay .keywords: matrix, hashtable, factor, HT
2960133cdb44SSatish Balay 
2961133cdb44SSatish Balay .seealso: MatSetOption()
2962133cdb44SSatish Balay @*/
2963be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPIBAIJSetHashTableFactor(Mat mat,PetscReal fact)
2964133cdb44SSatish Balay {
2965dfbe8321SBarry Smith   PetscErrorCode ierr,(*f)(Mat,PetscReal);
29665bf65638SKris Buschelman 
29675bf65638SKris Buschelman   PetscFunctionBegin;
29685bf65638SKris Buschelman   ierr = PetscObjectQueryFunction((PetscObject)mat,"MatSetHashTableFactor_C",(void (**)(void))&f);CHKERRQ(ierr);
29695bf65638SKris Buschelman   if (f) {
29705bf65638SKris Buschelman     ierr = (*f)(mat,fact);CHKERRQ(ierr);
29715bf65638SKris Buschelman   }
29725bf65638SKris Buschelman   PetscFunctionReturn(0);
29735bf65638SKris Buschelman }
29745bf65638SKris Buschelman 
2975be1d678aSKris Buschelman EXTERN_C_BEGIN
29765bf65638SKris Buschelman #undef __FUNCT__
29775bf65638SKris Buschelman #define __FUNCT__ "MatSetHashTableFactor_MPIBAIJ"
2978be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatSetHashTableFactor_MPIBAIJ(Mat mat,PetscReal fact)
29795bf65638SKris Buschelman {
298025fdafccSSatish Balay   Mat_MPIBAIJ *baij;
2981133cdb44SSatish Balay 
2982133cdb44SSatish Balay   PetscFunctionBegin;
2983133cdb44SSatish Balay   baij = (Mat_MPIBAIJ*)mat->data;
2984133cdb44SSatish Balay   baij->ht_fact = fact;
2985133cdb44SSatish Balay   PetscFunctionReturn(0);
2986133cdb44SSatish Balay }
2987be1d678aSKris Buschelman EXTERN_C_END
2988f2a5309cSSatish Balay 
29894a2ae208SSatish Balay #undef __FUNCT__
29904a2ae208SSatish Balay #define __FUNCT__ "MatMPIBAIJGetSeqBAIJ"
2991be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPIBAIJGetSeqBAIJ(Mat A,Mat *Ad,Mat *Ao,PetscInt *colmap[])
2992f2a5309cSSatish Balay {
2993f2a5309cSSatish Balay   Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data;
2994f2a5309cSSatish Balay   PetscFunctionBegin;
2995f2a5309cSSatish Balay   *Ad     = a->A;
2996f2a5309cSSatish Balay   *Ao     = a->B;
2997195d93cdSBarry Smith   *colmap = a->garray;
2998f2a5309cSSatish Balay   PetscFunctionReturn(0);
2999f2a5309cSSatish Balay }
3000