xref: /petsc/src/mat/impls/baij/mpi/mpibaij.c (revision 97e5c40a63d3f963eb379f22da5ce69dc304f982)
1be1d678aSKris Buschelman #define PETSCMAT_DLL
279bdfe76SSatish Balay 
3e090d566SSatish Balay #include "src/mat/impls/baij/mpi/mpibaij.h"   /*I  "petscmat.h"  I*/
479bdfe76SSatish Balay 
5dfbe8321SBarry Smith EXTERN PetscErrorCode MatSetUpMultiply_MPIBAIJ(Mat);
6dfbe8321SBarry Smith EXTERN PetscErrorCode DisAssemble_MPIBAIJ(Mat);
7b24ad042SBarry Smith EXTERN PetscErrorCode MatIncreaseOverlap_MPIBAIJ(Mat,PetscInt,IS[],PetscInt);
8b24ad042SBarry Smith EXTERN PetscErrorCode MatGetSubMatrices_MPIBAIJ(Mat,PetscInt,const IS[],const IS[],MatReuse,Mat *[]);
9b24ad042SBarry Smith EXTERN PetscErrorCode MatGetValues_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt [],PetscScalar []);
10b24ad042SBarry Smith EXTERN PetscErrorCode MatSetValues_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt [],const PetscScalar [],InsertMode);
11b24ad042SBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode);
12b24ad042SBarry Smith EXTERN PetscErrorCode MatGetRow_SeqBAIJ(Mat,PetscInt,PetscInt*,PetscInt*[],PetscScalar*[]);
13b24ad042SBarry Smith EXTERN PetscErrorCode MatRestoreRow_SeqBAIJ(Mat,PetscInt,PetscInt*,PetscInt*[],PetscScalar*[]);
14f4df32b1SMatthew Knepley EXTERN PetscErrorCode MatZeroRows_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscScalar);
1593fea6afSBarry Smith 
164a2ae208SSatish Balay #undef __FUNCT__
17985db425SBarry Smith #define __FUNCT__ "MatGetRowMaxAbs_MPIBAIJ"
18985db425SBarry Smith PetscErrorCode MatGetRowMaxAbs_MPIBAIJ(Mat A,Vec v,PetscInt idx[])
197843d17aSBarry Smith {
207843d17aSBarry Smith   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)A->data;
21dfbe8321SBarry Smith   PetscErrorCode ierr;
22985db425SBarry Smith   PetscInt       i,*idxb = 0;
2387828ca2SBarry Smith   PetscScalar    *va,*vb;
247843d17aSBarry Smith   Vec            vtmp;
257843d17aSBarry Smith 
267843d17aSBarry Smith   PetscFunctionBegin;
277843d17aSBarry Smith 
28985db425SBarry Smith   ierr = MatGetRowMaxAbs(a->A,v,idx);CHKERRQ(ierr);
291ebc52fbSHong Zhang   ierr = VecGetArray(v,&va);CHKERRQ(ierr);
30985db425SBarry Smith   if (idx) {
31ff6e566aSBarry Smith     for (i=0; i<A->cmap.n; i++) {if (PetscAbsScalar(va[i])) idx[i] += A->cmap.rstart;}
32985db425SBarry Smith   }
337843d17aSBarry Smith 
34899cda47SBarry Smith   ierr = VecCreateSeq(PETSC_COMM_SELF,A->rmap.n,&vtmp);CHKERRQ(ierr);
35985db425SBarry Smith   if (idx) {ierr = PetscMalloc(A->rmap.n*sizeof(PetscInt),&idxb);CHKERRQ(ierr);}
36985db425SBarry Smith   ierr = MatGetRowMaxAbs(a->B,vtmp,idxb);CHKERRQ(ierr);
371ebc52fbSHong Zhang   ierr = VecGetArray(vtmp,&vb);CHKERRQ(ierr);
387843d17aSBarry Smith 
39899cda47SBarry Smith   for (i=0; i<A->rmap.n; i++){
40985db425SBarry Smith     if (PetscAbsScalar(va[i]) < PetscAbsScalar(vb[i])) {va[i] = vb[i]; if (idx) idx[i] = A->cmap.bs*a->garray[idxb[i]/A->cmap.bs] + (idxb[i] % A->cmap.bs);}
417843d17aSBarry Smith   }
427843d17aSBarry Smith 
431ebc52fbSHong Zhang   ierr = VecRestoreArray(v,&va);CHKERRQ(ierr);
441ebc52fbSHong Zhang   ierr = VecRestoreArray(vtmp,&vb);CHKERRQ(ierr);
45985db425SBarry Smith   if (idxb) {ierr = PetscFree(idxb);CHKERRQ(ierr);}
46ac355199SBarry Smith   ierr = VecDestroy(vtmp);CHKERRQ(ierr);
477843d17aSBarry Smith   PetscFunctionReturn(0);
487843d17aSBarry Smith }
497843d17aSBarry Smith 
507fc3c18eSBarry Smith EXTERN_C_BEGIN
514a2ae208SSatish Balay #undef __FUNCT__
524a2ae208SSatish Balay #define __FUNCT__ "MatStoreValues_MPIBAIJ"
53be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatStoreValues_MPIBAIJ(Mat mat)
547fc3c18eSBarry Smith {
557fc3c18eSBarry Smith   Mat_MPIBAIJ    *aij = (Mat_MPIBAIJ *)mat->data;
56dfbe8321SBarry Smith   PetscErrorCode ierr;
577fc3c18eSBarry Smith 
587fc3c18eSBarry Smith   PetscFunctionBegin;
597fc3c18eSBarry Smith   ierr = MatStoreValues(aij->A);CHKERRQ(ierr);
607fc3c18eSBarry Smith   ierr = MatStoreValues(aij->B);CHKERRQ(ierr);
617fc3c18eSBarry Smith   PetscFunctionReturn(0);
627fc3c18eSBarry Smith }
637fc3c18eSBarry Smith EXTERN_C_END
647fc3c18eSBarry Smith 
657fc3c18eSBarry Smith EXTERN_C_BEGIN
664a2ae208SSatish Balay #undef __FUNCT__
674a2ae208SSatish Balay #define __FUNCT__ "MatRetrieveValues_MPIBAIJ"
68be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatRetrieveValues_MPIBAIJ(Mat mat)
697fc3c18eSBarry Smith {
707fc3c18eSBarry Smith   Mat_MPIBAIJ    *aij = (Mat_MPIBAIJ *)mat->data;
71dfbe8321SBarry Smith   PetscErrorCode ierr;
727fc3c18eSBarry Smith 
737fc3c18eSBarry Smith   PetscFunctionBegin;
747fc3c18eSBarry Smith   ierr = MatRetrieveValues(aij->A);CHKERRQ(ierr);
757fc3c18eSBarry Smith   ierr = MatRetrieveValues(aij->B);CHKERRQ(ierr);
767fc3c18eSBarry Smith   PetscFunctionReturn(0);
777fc3c18eSBarry Smith }
787fc3c18eSBarry Smith EXTERN_C_END
797fc3c18eSBarry Smith 
80537820f0SBarry Smith /*
81537820f0SBarry Smith      Local utility routine that creates a mapping from the global column
8257b952d6SSatish Balay    number to the local number in the off-diagonal part of the local
8357b952d6SSatish Balay    storage of the matrix.  This is done in a non scable way since the
8457b952d6SSatish Balay    length of colmap equals the global matrix length.
8557b952d6SSatish Balay */
864a2ae208SSatish Balay #undef __FUNCT__
874a2ae208SSatish Balay #define __FUNCT__ "CreateColmap_MPIBAIJ_Private"
88dfbe8321SBarry Smith PetscErrorCode CreateColmap_MPIBAIJ_Private(Mat mat)
8957b952d6SSatish Balay {
9057b952d6SSatish Balay   Mat_MPIBAIJ    *baij = (Mat_MPIBAIJ*)mat->data;
9157b952d6SSatish Balay   Mat_SeqBAIJ    *B = (Mat_SeqBAIJ*)baij->B->data;
926849ba73SBarry Smith   PetscErrorCode ierr;
93899cda47SBarry Smith   PetscInt       nbs = B->nbs,i,bs=mat->rmap.bs;
9457b952d6SSatish Balay 
95d64ed03dSBarry Smith   PetscFunctionBegin;
96aa482453SBarry Smith #if defined (PETSC_USE_CTABLE)
97f14a1c24SBarry Smith   ierr = PetscTableCreate(baij->nbs,&baij->colmap);CHKERRQ(ierr);
9848e59246SSatish Balay   for (i=0; i<nbs; i++){
990f5bd95cSBarry Smith     ierr = PetscTableAdd(baij->colmap,baij->garray[i]+1,i*bs+1);CHKERRQ(ierr);
10048e59246SSatish Balay   }
10148e59246SSatish Balay #else
102b24ad042SBarry Smith   ierr = PetscMalloc((baij->Nbs+1)*sizeof(PetscInt),&baij->colmap);CHKERRQ(ierr);
10352e6d16bSBarry Smith   ierr = PetscLogObjectMemory(mat,baij->Nbs*sizeof(PetscInt));CHKERRQ(ierr);
104b24ad042SBarry Smith   ierr = PetscMemzero(baij->colmap,baij->Nbs*sizeof(PetscInt));CHKERRQ(ierr);
105928fc39bSSatish Balay   for (i=0; i<nbs; i++) baij->colmap[baij->garray[i]] = i*bs+1;
10648e59246SSatish Balay #endif
1073a40ed3dSBarry Smith   PetscFunctionReturn(0);
10857b952d6SSatish Balay }
10957b952d6SSatish Balay 
11080c1aa95SSatish Balay #define CHUNKSIZE  10
11180c1aa95SSatish Balay 
112f5e9677aSSatish Balay #define  MatSetValues_SeqBAIJ_A_Private(row,col,value,addv) \
11380c1aa95SSatish Balay { \
11480c1aa95SSatish Balay  \
11580c1aa95SSatish Balay     brow = row/bs;  \
11680c1aa95SSatish Balay     rp   = aj + ai[brow]; ap = aa + bs2*ai[brow]; \
117ac7a638eSSatish Balay     rmax = aimax[brow]; nrow = ailen[brow]; \
11880c1aa95SSatish Balay       bcol = col/bs; \
11980c1aa95SSatish Balay       ridx = row % bs; cidx = col % bs; \
120ab26458aSBarry Smith       low = 0; high = nrow; \
121ab26458aSBarry Smith       while (high-low > 3) { \
122ab26458aSBarry Smith         t = (low+high)/2; \
123ab26458aSBarry Smith         if (rp[t] > bcol) high = t; \
124ab26458aSBarry Smith         else              low  = t; \
125ab26458aSBarry Smith       } \
126ab26458aSBarry Smith       for (_i=low; _i<high; _i++) { \
12780c1aa95SSatish Balay         if (rp[_i] > bcol) break; \
12880c1aa95SSatish Balay         if (rp[_i] == bcol) { \
12980c1aa95SSatish Balay           bap  = ap +  bs2*_i + bs*cidx + ridx; \
130eada6651SSatish Balay           if (addv == ADD_VALUES) *bap += value;  \
131eada6651SSatish Balay           else                    *bap  = value;  \
132ac7a638eSSatish Balay           goto a_noinsert; \
13380c1aa95SSatish Balay         } \
13480c1aa95SSatish Balay       } \
13589280ab3SLois Curfman McInnes       if (a->nonew == 1) goto a_noinsert; \
136085a36d4SBarry Smith       if (a->nonew == -1) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \
137421e10b8SBarry Smith       MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,brow,bcol,rmax,aa,ai,aj,rp,ap,aimax,a->nonew,MatScalar); \
13880c1aa95SSatish Balay       N = nrow++ - 1;  \
13980c1aa95SSatish Balay       /* shift up all the later entries in this row */ \
14080c1aa95SSatish Balay       for (ii=N; ii>=_i; ii--) { \
14180c1aa95SSatish Balay         rp[ii+1] = rp[ii]; \
1423eda8832SBarry Smith         ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \
14380c1aa95SSatish Balay       } \
1443eda8832SBarry Smith       if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr); }  \
14580c1aa95SSatish Balay       rp[_i]                      = bcol;  \
14680c1aa95SSatish Balay       ap[bs2*_i + bs*cidx + ridx] = value;  \
147ac7a638eSSatish Balay       a_noinsert:; \
14880c1aa95SSatish Balay     ailen[brow] = nrow; \
14980c1aa95SSatish Balay }
15057b952d6SSatish Balay 
151ac7a638eSSatish Balay #define  MatSetValues_SeqBAIJ_B_Private(row,col,value,addv) \
152ac7a638eSSatish Balay { \
153ac7a638eSSatish Balay     brow = row/bs;  \
154ac7a638eSSatish Balay     rp   = bj + bi[brow]; ap = ba + bs2*bi[brow]; \
155ac7a638eSSatish Balay     rmax = bimax[brow]; nrow = bilen[brow]; \
156ac7a638eSSatish Balay       bcol = col/bs; \
157ac7a638eSSatish Balay       ridx = row % bs; cidx = col % bs; \
158ac7a638eSSatish Balay       low = 0; high = nrow; \
159ac7a638eSSatish Balay       while (high-low > 3) { \
160ac7a638eSSatish Balay         t = (low+high)/2; \
161ac7a638eSSatish Balay         if (rp[t] > bcol) high = t; \
162ac7a638eSSatish Balay         else              low  = t; \
163ac7a638eSSatish Balay       } \
164ac7a638eSSatish Balay       for (_i=low; _i<high; _i++) { \
165ac7a638eSSatish Balay         if (rp[_i] > bcol) break; \
166ac7a638eSSatish Balay         if (rp[_i] == bcol) { \
167ac7a638eSSatish Balay           bap  = ap +  bs2*_i + bs*cidx + ridx; \
168ac7a638eSSatish Balay           if (addv == ADD_VALUES) *bap += value;  \
169ac7a638eSSatish Balay           else                    *bap  = value;  \
170ac7a638eSSatish Balay           goto b_noinsert; \
171ac7a638eSSatish Balay         } \
172ac7a638eSSatish Balay       } \
17389280ab3SLois Curfman McInnes       if (b->nonew == 1) goto b_noinsert; \
174085a36d4SBarry Smith       if (b->nonew == -1) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \
175421e10b8SBarry Smith       MatSeqXAIJReallocateAIJ(B,b->mbs,bs2,nrow,brow,bcol,rmax,ba,bi,bj,rp,ap,bimax,b->nonew,MatScalar); \
176085a36d4SBarry Smith       CHKMEMQ;\
177ac7a638eSSatish Balay       N = nrow++ - 1;  \
178ac7a638eSSatish Balay       /* shift up all the later entries in this row */ \
179ac7a638eSSatish Balay       for (ii=N; ii>=_i; ii--) { \
180ac7a638eSSatish Balay         rp[ii+1] = rp[ii]; \
1813eda8832SBarry Smith         ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \
182ac7a638eSSatish Balay       } \
1833eda8832SBarry Smith       if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr);}  \
184ac7a638eSSatish Balay       rp[_i]                      = bcol;  \
185ac7a638eSSatish Balay       ap[bs2*_i + bs*cidx + ridx] = value;  \
186ac7a638eSSatish Balay       b_noinsert:; \
187ac7a638eSSatish Balay     bilen[brow] = nrow; \
188ac7a638eSSatish Balay }
189ac7a638eSSatish Balay 
1904a2ae208SSatish Balay #undef __FUNCT__
1914a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_MPIBAIJ"
192b24ad042SBarry Smith PetscErrorCode MatSetValues_MPIBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv)
19357b952d6SSatish Balay {
19457b952d6SSatish Balay   Mat_MPIBAIJ    *baij = (Mat_MPIBAIJ*)mat->data;
19593fea6afSBarry Smith   MatScalar      value;
196273d9f13SBarry Smith   PetscTruth     roworiented = baij->roworiented;
197dfbe8321SBarry Smith   PetscErrorCode ierr;
198b24ad042SBarry Smith   PetscInt       i,j,row,col;
199899cda47SBarry Smith   PetscInt       rstart_orig=mat->rmap.rstart;
200899cda47SBarry Smith   PetscInt       rend_orig=mat->rmap.rend,cstart_orig=mat->cmap.rstart;
201899cda47SBarry Smith   PetscInt       cend_orig=mat->cmap.rend,bs=mat->rmap.bs;
20257b952d6SSatish Balay 
203eada6651SSatish Balay   /* Some Variables required in the macro */
20480c1aa95SSatish Balay   Mat            A = baij->A;
20580c1aa95SSatish Balay   Mat_SeqBAIJ    *a = (Mat_SeqBAIJ*)(A)->data;
206b24ad042SBarry Smith   PetscInt       *aimax=a->imax,*ai=a->i,*ailen=a->ilen,*aj=a->j;
2073eda8832SBarry Smith   MatScalar      *aa=a->a;
208ac7a638eSSatish Balay 
209ac7a638eSSatish Balay   Mat            B = baij->B;
210ac7a638eSSatish Balay   Mat_SeqBAIJ    *b = (Mat_SeqBAIJ*)(B)->data;
211b24ad042SBarry Smith   PetscInt       *bimax=b->imax,*bi=b->i,*bilen=b->ilen,*bj=b->j;
2123eda8832SBarry Smith   MatScalar      *ba=b->a;
213ac7a638eSSatish Balay 
214b24ad042SBarry Smith   PetscInt       *rp,ii,nrow,_i,rmax,N,brow,bcol;
215b24ad042SBarry Smith   PetscInt       low,high,t,ridx,cidx,bs2=a->bs2;
2163eda8832SBarry Smith   MatScalar      *ap,*bap;
21780c1aa95SSatish Balay 
218d64ed03dSBarry Smith   PetscFunctionBegin;
21957b952d6SSatish Balay   for (i=0; i<m; i++) {
2205ef9f2a5SBarry Smith     if (im[i] < 0) continue;
2212515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
222899cda47SBarry Smith     if (im[i] >= mat->rmap.N) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],mat->rmap.N-1);
223639f9d9dSBarry Smith #endif
22457b952d6SSatish Balay     if (im[i] >= rstart_orig && im[i] < rend_orig) {
22557b952d6SSatish Balay       row = im[i] - rstart_orig;
22657b952d6SSatish Balay       for (j=0; j<n; j++) {
22757b952d6SSatish Balay         if (in[j] >= cstart_orig && in[j] < cend_orig){
22857b952d6SSatish Balay           col = in[j] - cstart_orig;
22957b952d6SSatish Balay           if (roworiented) value = v[i*n+j]; else value = v[i+j*m];
230f5e9677aSSatish Balay           MatSetValues_SeqBAIJ_A_Private(row,col,value,addv);
23180c1aa95SSatish Balay           /* ierr = MatSetValues_SeqBAIJ(baij->A,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */
23273959e64SBarry Smith         } else if (in[j] < 0) continue;
2332515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
234899cda47SBarry Smith         else if (in[j] >= mat->cmap.N) {SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",in[i],mat->cmap.N-1);}
235639f9d9dSBarry Smith #endif
23657b952d6SSatish Balay         else {
23757b952d6SSatish Balay           if (mat->was_assembled) {
238905e6a2fSBarry Smith             if (!baij->colmap) {
239905e6a2fSBarry Smith               ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
240905e6a2fSBarry Smith             }
241aa482453SBarry Smith #if defined (PETSC_USE_CTABLE)
2420f5bd95cSBarry Smith             ierr = PetscTableFind(baij->colmap,in[j]/bs + 1,&col);CHKERRQ(ierr);
243bba1ac68SSatish Balay             col  = col - 1;
24448e59246SSatish Balay #else
245bba1ac68SSatish Balay             col = baij->colmap[in[j]/bs] - 1;
24648e59246SSatish Balay #endif
24757b952d6SSatish Balay             if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) {
24857b952d6SSatish Balay               ierr = DisAssemble_MPIBAIJ(mat);CHKERRQ(ierr);
2498295de27SSatish Balay               col =  in[j];
2509bf004c3SSatish Balay               /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */
2519bf004c3SSatish Balay               B = baij->B;
2529bf004c3SSatish Balay               b = (Mat_SeqBAIJ*)(B)->data;
2539bf004c3SSatish Balay               bimax=b->imax;bi=b->i;bilen=b->ilen;bj=b->j;
2549bf004c3SSatish Balay               ba=b->a;
255bba1ac68SSatish Balay             } else col += in[j]%bs;
2568295de27SSatish Balay           } else col = in[j];
25757b952d6SSatish Balay           if (roworiented) value = v[i*n+j]; else value = v[i+j*m];
25890da58bdSSatish Balay           MatSetValues_SeqBAIJ_B_Private(row,col,value,addv);
25990da58bdSSatish Balay           /* ierr = MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */
26057b952d6SSatish Balay         }
26157b952d6SSatish Balay       }
262d64ed03dSBarry Smith     } else {
26390f02eecSBarry Smith       if (!baij->donotstash) {
264ff2fd236SBarry Smith         if (roworiented) {
2656fa18ffdSBarry Smith           ierr = MatStashValuesRow_Private(&mat->stash,im[i],n,in,v+i*n);CHKERRQ(ierr);
266ff2fd236SBarry Smith         } else {
2676fa18ffdSBarry Smith           ierr = MatStashValuesCol_Private(&mat->stash,im[i],n,in,v+i,m);CHKERRQ(ierr);
26857b952d6SSatish Balay         }
26957b952d6SSatish Balay       }
27057b952d6SSatish Balay     }
27190f02eecSBarry Smith   }
2723a40ed3dSBarry Smith   PetscFunctionReturn(0);
27357b952d6SSatish Balay }
27457b952d6SSatish Balay 
2754a2ae208SSatish Balay #undef __FUNCT__
276*97e5c40aSBarry Smith #define __FUNCT__ "MatSetValuesBlocked_MPIBAIJ"
277*97e5c40aSBarry Smith PetscErrorCode MatSetValuesBlocked_MPIBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv)
278ab26458aSBarry Smith {
279ab26458aSBarry Smith   Mat_MPIBAIJ     *baij = (Mat_MPIBAIJ*)mat->data;
280f15d580aSBarry Smith   const MatScalar *value;
281f15d580aSBarry Smith   MatScalar       *barray=baij->barray;
282273d9f13SBarry Smith   PetscTruth      roworiented = baij->roworiented;
283dfbe8321SBarry Smith   PetscErrorCode  ierr;
284899cda47SBarry Smith   PetscInt        i,j,ii,jj,row,col,rstart=baij->rstartbs;
285899cda47SBarry Smith   PetscInt        rend=baij->rendbs,cstart=baij->cstartbs,stepval;
286899cda47SBarry Smith   PetscInt        cend=baij->cendbs,bs=mat->rmap.bs,bs2=baij->bs2;
287ab26458aSBarry Smith 
288b16ae2b1SBarry Smith   PetscFunctionBegin;
28930793edcSSatish Balay   if(!barray) {
29082502324SSatish Balay     ierr         = PetscMalloc(bs2*sizeof(MatScalar),&barray);CHKERRQ(ierr);
29182502324SSatish Balay     baij->barray = barray;
29230793edcSSatish Balay   }
29330793edcSSatish Balay 
294ab26458aSBarry Smith   if (roworiented) {
295ab26458aSBarry Smith     stepval = (n-1)*bs;
296ab26458aSBarry Smith   } else {
297ab26458aSBarry Smith     stepval = (m-1)*bs;
298ab26458aSBarry Smith   }
299ab26458aSBarry Smith   for (i=0; i<m; i++) {
3005ef9f2a5SBarry Smith     if (im[i] < 0) continue;
3012515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
30277431f27SBarry Smith     if (im[i] >= baij->Mbs) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large, row %D max %D",im[i],baij->Mbs-1);
303ab26458aSBarry Smith #endif
304ab26458aSBarry Smith     if (im[i] >= rstart && im[i] < rend) {
305ab26458aSBarry Smith       row = im[i] - rstart;
306ab26458aSBarry Smith       for (j=0; j<n; j++) {
30715b57d14SSatish Balay         /* If NumCol = 1 then a copy is not required */
30815b57d14SSatish Balay         if ((roworiented) && (n == 1)) {
309f15d580aSBarry Smith           barray = (MatScalar*)v + i*bs2;
31015b57d14SSatish Balay         } else if((!roworiented) && (m == 1)) {
311f15d580aSBarry Smith           barray = (MatScalar*)v + j*bs2;
31215b57d14SSatish Balay         } else { /* Here a copy is required */
313ab26458aSBarry Smith           if (roworiented) {
314ab26458aSBarry Smith             value = v + i*(stepval+bs)*bs + j*bs;
315ab26458aSBarry Smith           } else {
316ab26458aSBarry Smith             value = v + j*(stepval+bs)*bs + i*bs;
317abef11f7SSatish Balay           }
31847513183SBarry Smith           for (ii=0; ii<bs; ii++,value+=stepval) {
31947513183SBarry Smith             for (jj=0; jj<bs; jj++) {
32030793edcSSatish Balay               *barray++  = *value++;
32147513183SBarry Smith             }
32247513183SBarry Smith           }
32330793edcSSatish Balay           barray -=bs2;
32415b57d14SSatish Balay         }
325abef11f7SSatish Balay 
326abef11f7SSatish Balay         if (in[j] >= cstart && in[j] < cend){
327abef11f7SSatish Balay           col  = in[j] - cstart;
328*97e5c40aSBarry Smith           ierr = MatSetValuesBlocked_SeqBAIJ(baij->A,1,&row,1,&col,barray,addv);CHKERRQ(ierr);
329ab26458aSBarry Smith         }
3305ef9f2a5SBarry Smith         else if (in[j] < 0) continue;
3312515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
33277431f27SBarry Smith         else if (in[j] >= baij->Nbs) {SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large, col %D max %D",in[j],baij->Nbs-1);}
333ab26458aSBarry Smith #endif
334ab26458aSBarry Smith         else {
335ab26458aSBarry Smith           if (mat->was_assembled) {
336ab26458aSBarry Smith             if (!baij->colmap) {
337ab26458aSBarry Smith               ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
338ab26458aSBarry Smith             }
339a5eb4965SSatish Balay 
3402515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
341aa482453SBarry Smith #if defined (PETSC_USE_CTABLE)
342b24ad042SBarry Smith             { PetscInt data;
3430f5bd95cSBarry Smith               ierr = PetscTableFind(baij->colmap,in[j]+1,&data);CHKERRQ(ierr);
34429bbc08cSBarry Smith               if ((data - 1) % bs) SETERRQ(PETSC_ERR_PLIB,"Incorrect colmap");
345fa46199cSSatish Balay             }
34648e59246SSatish Balay #else
34729bbc08cSBarry Smith             if ((baij->colmap[in[j]] - 1) % bs) SETERRQ(PETSC_ERR_PLIB,"Incorrect colmap");
348a5eb4965SSatish Balay #endif
34948e59246SSatish Balay #endif
350aa482453SBarry Smith #if defined (PETSC_USE_CTABLE)
3510f5bd95cSBarry Smith 	    ierr = PetscTableFind(baij->colmap,in[j]+1,&col);CHKERRQ(ierr);
352fa46199cSSatish Balay             col  = (col - 1)/bs;
35348e59246SSatish Balay #else
354a5eb4965SSatish Balay             col = (baij->colmap[in[j]] - 1)/bs;
35548e59246SSatish Balay #endif
356ab26458aSBarry Smith             if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) {
357ab26458aSBarry Smith               ierr = DisAssemble_MPIBAIJ(mat);CHKERRQ(ierr);
358ab26458aSBarry Smith               col =  in[j];
359ab26458aSBarry Smith             }
360ab26458aSBarry Smith           }
361ab26458aSBarry Smith           else col = in[j];
362*97e5c40aSBarry Smith           ierr = MatSetValuesBlocked_SeqBAIJ(baij->B,1,&row,1,&col,barray,addv);CHKERRQ(ierr);
363ab26458aSBarry Smith         }
364ab26458aSBarry Smith       }
365d64ed03dSBarry Smith     } else {
366ab26458aSBarry Smith       if (!baij->donotstash) {
367ff2fd236SBarry Smith         if (roworiented) {
3686fa18ffdSBarry Smith           ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
369ff2fd236SBarry Smith         } else {
3706fa18ffdSBarry Smith           ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
371ff2fd236SBarry Smith         }
372abef11f7SSatish Balay       }
373ab26458aSBarry Smith     }
374ab26458aSBarry Smith   }
3753a40ed3dSBarry Smith   PetscFunctionReturn(0);
376ab26458aSBarry Smith }
3776fa18ffdSBarry Smith 
3780bdbc534SSatish Balay #define HASH_KEY 0.6180339887
379b24ad042SBarry Smith #define HASH(size,key,tmp) (tmp = (key)*HASH_KEY,(PetscInt)((size)*(tmp-(PetscInt)tmp)))
380b24ad042SBarry Smith /* #define HASH(size,key) ((PetscInt)((size)*fmod(((key)*HASH_KEY),1))) */
381b24ad042SBarry Smith /* #define HASH(size,key,tmp) ((PetscInt)((size)*fmod(((key)*HASH_KEY),1))) */
3824a2ae208SSatish Balay #undef __FUNCT__
383*97e5c40aSBarry Smith #define __FUNCT__ "MatSetValues_MPIBAIJ_HT"
384*97e5c40aSBarry Smith PetscErrorCode MatSetValues_MPIBAIJ_HT(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv)
3850bdbc534SSatish Balay {
3860bdbc534SSatish Balay   Mat_MPIBAIJ    *baij = (Mat_MPIBAIJ*)mat->data;
387273d9f13SBarry Smith   PetscTruth     roworiented = baij->roworiented;
388dfbe8321SBarry Smith   PetscErrorCode ierr;
389b24ad042SBarry Smith   PetscInt       i,j,row,col;
390899cda47SBarry Smith   PetscInt       rstart_orig=mat->rmap.rstart;
391899cda47SBarry Smith   PetscInt       rend_orig=mat->rmap.rend,Nbs=baij->Nbs;
392899cda47SBarry Smith   PetscInt       h1,key,size=baij->ht_size,bs=mat->rmap.bs,*HT=baij->ht,idx;
393329f5518SBarry Smith   PetscReal      tmp;
3943eda8832SBarry Smith   MatScalar      **HD = baij->hd,value;
3952515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
396b24ad042SBarry Smith   PetscInt       total_ct=baij->ht_total_ct,insert_ct=baij->ht_insert_ct;
3974a15367fSSatish Balay #endif
3980bdbc534SSatish Balay 
3990bdbc534SSatish Balay   PetscFunctionBegin;
4000bdbc534SSatish Balay 
4010bdbc534SSatish Balay   for (i=0; i<m; i++) {
4022515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
40329bbc08cSBarry Smith     if (im[i] < 0) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Negative row");
404899cda47SBarry Smith     if (im[i] >= mat->rmap.N) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],mat->rmap.N-1);
4050bdbc534SSatish Balay #endif
4060bdbc534SSatish Balay       row = im[i];
407c2760754SSatish Balay     if (row >= rstart_orig && row < rend_orig) {
4080bdbc534SSatish Balay       for (j=0; j<n; j++) {
4090bdbc534SSatish Balay         col = in[j];
4106fa18ffdSBarry Smith         if (roworiented) value = v[i*n+j]; else value = v[i+j*m];
411b24ad042SBarry Smith         /* Look up PetscInto the Hash Table */
412c2760754SSatish Balay         key = (row/bs)*Nbs+(col/bs)+1;
413c2760754SSatish Balay         h1  = HASH(size,key,tmp);
4140bdbc534SSatish Balay 
415c2760754SSatish Balay 
416c2760754SSatish Balay         idx = h1;
4172515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
418187ce0cbSSatish Balay         insert_ct++;
419187ce0cbSSatish Balay         total_ct++;
420187ce0cbSSatish Balay         if (HT[idx] != key) {
421187ce0cbSSatish Balay           for (idx=h1; (idx<size) && (HT[idx]!=key); idx++,total_ct++);
422187ce0cbSSatish Balay           if (idx == size) {
423187ce0cbSSatish Balay             for (idx=0; (idx<h1) && (HT[idx]!=key); idx++,total_ct++);
424187ce0cbSSatish Balay             if (idx == h1) {
42577431f27SBarry Smith               SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"(%D,%D) has no entry in the hash table", row, col);
426187ce0cbSSatish Balay             }
427187ce0cbSSatish Balay           }
428187ce0cbSSatish Balay         }
429187ce0cbSSatish Balay #else
430c2760754SSatish Balay         if (HT[idx] != key) {
431c2760754SSatish Balay           for (idx=h1; (idx<size) && (HT[idx]!=key); idx++);
432c2760754SSatish Balay           if (idx == size) {
433c2760754SSatish Balay             for (idx=0; (idx<h1) && (HT[idx]!=key); idx++);
434c2760754SSatish Balay             if (idx == h1) {
43577431f27SBarry Smith               SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"(%D,%D) has no entry in the hash table", row, col);
436c2760754SSatish Balay             }
437c2760754SSatish Balay           }
438c2760754SSatish Balay         }
439187ce0cbSSatish Balay #endif
440c2760754SSatish Balay         /* A HASH table entry is found, so insert the values at the correct address */
441c2760754SSatish Balay         if (addv == ADD_VALUES) *(HD[idx]+ (col % bs)*bs + (row % bs)) += value;
442c2760754SSatish Balay         else                    *(HD[idx]+ (col % bs)*bs + (row % bs))  = value;
4430bdbc534SSatish Balay       }
4440bdbc534SSatish Balay     } else {
4450bdbc534SSatish Balay       if (!baij->donotstash) {
446ff2fd236SBarry Smith         if (roworiented) {
4478798bf22SSatish Balay           ierr = MatStashValuesRow_Private(&mat->stash,im[i],n,in,v+i*n);CHKERRQ(ierr);
448ff2fd236SBarry Smith         } else {
4498798bf22SSatish Balay           ierr = MatStashValuesCol_Private(&mat->stash,im[i],n,in,v+i,m);CHKERRQ(ierr);
4500bdbc534SSatish Balay         }
4510bdbc534SSatish Balay       }
4520bdbc534SSatish Balay     }
4530bdbc534SSatish Balay   }
4542515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
455187ce0cbSSatish Balay   baij->ht_total_ct = total_ct;
456187ce0cbSSatish Balay   baij->ht_insert_ct = insert_ct;
457187ce0cbSSatish Balay #endif
4580bdbc534SSatish Balay   PetscFunctionReturn(0);
4590bdbc534SSatish Balay }
4600bdbc534SSatish Balay 
4614a2ae208SSatish Balay #undef __FUNCT__
462*97e5c40aSBarry Smith #define __FUNCT__ "MatSetValuesBlocked_MPIBAIJ_HT"
463*97e5c40aSBarry Smith PetscErrorCode MatSetValuesBlocked_MPIBAIJ_HT(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv)
4640bdbc534SSatish Balay {
4650bdbc534SSatish Balay   Mat_MPIBAIJ     *baij = (Mat_MPIBAIJ*)mat->data;
466273d9f13SBarry Smith   PetscTruth      roworiented = baij->roworiented;
467dfbe8321SBarry Smith   PetscErrorCode  ierr;
468b24ad042SBarry Smith   PetscInt        i,j,ii,jj,row,col;
469899cda47SBarry Smith   PetscInt        rstart=baij->rstartbs;
470ab715e2cSSatish Balay   PetscInt        rend=mat->rmap.rend,stepval,bs=mat->rmap.bs,bs2=baij->bs2,nbs2=n*bs2;
471b24ad042SBarry Smith   PetscInt        h1,key,size=baij->ht_size,idx,*HT=baij->ht,Nbs=baij->Nbs;
472329f5518SBarry Smith   PetscReal       tmp;
4733eda8832SBarry Smith   MatScalar       **HD = baij->hd,*baij_a;
474f15d580aSBarry Smith   const MatScalar *v_t,*value;
4752515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
476b24ad042SBarry Smith   PetscInt        total_ct=baij->ht_total_ct,insert_ct=baij->ht_insert_ct;
4774a15367fSSatish Balay #endif
4780bdbc534SSatish Balay 
479d0a41580SSatish Balay   PetscFunctionBegin;
480d0a41580SSatish Balay 
4810bdbc534SSatish Balay   if (roworiented) {
4820bdbc534SSatish Balay     stepval = (n-1)*bs;
4830bdbc534SSatish Balay   } else {
4840bdbc534SSatish Balay     stepval = (m-1)*bs;
4850bdbc534SSatish Balay   }
4860bdbc534SSatish Balay   for (i=0; i<m; i++) {
4872515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
48877431f27SBarry Smith     if (im[i] < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %D",im[i]);
48977431f27SBarry Smith     if (im[i] >= baij->Mbs) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],baij->Mbs-1);
4900bdbc534SSatish Balay #endif
4910bdbc534SSatish Balay     row   = im[i];
492ab715e2cSSatish Balay     v_t   = v + i*nbs2;
493c2760754SSatish Balay     if (row >= rstart && row < rend) {
4940bdbc534SSatish Balay       for (j=0; j<n; j++) {
4950bdbc534SSatish Balay         col = in[j];
4960bdbc534SSatish Balay 
4970bdbc534SSatish Balay         /* Look up into the Hash Table */
498c2760754SSatish Balay         key = row*Nbs+col+1;
499c2760754SSatish Balay         h1  = HASH(size,key,tmp);
5000bdbc534SSatish Balay 
501c2760754SSatish Balay         idx = h1;
5022515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
503187ce0cbSSatish Balay         total_ct++;
504187ce0cbSSatish Balay         insert_ct++;
505187ce0cbSSatish Balay        if (HT[idx] != key) {
506187ce0cbSSatish Balay           for (idx=h1; (idx<size) && (HT[idx]!=key); idx++,total_ct++);
507187ce0cbSSatish Balay           if (idx == size) {
508187ce0cbSSatish Balay             for (idx=0; (idx<h1) && (HT[idx]!=key); idx++,total_ct++);
509187ce0cbSSatish Balay             if (idx == h1) {
51077431f27SBarry Smith               SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"(%D,%D) has no entry in the hash table", row, col);
511187ce0cbSSatish Balay             }
512187ce0cbSSatish Balay           }
513187ce0cbSSatish Balay         }
514187ce0cbSSatish Balay #else
515c2760754SSatish Balay         if (HT[idx] != key) {
516c2760754SSatish Balay           for (idx=h1; (idx<size) && (HT[idx]!=key); idx++);
517c2760754SSatish Balay           if (idx == size) {
518c2760754SSatish Balay             for (idx=0; (idx<h1) && (HT[idx]!=key); idx++);
519c2760754SSatish Balay             if (idx == h1) {
52077431f27SBarry Smith               SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"(%D,%D) has no entry in the hash table", row, col);
521c2760754SSatish Balay             }
522c2760754SSatish Balay           }
523c2760754SSatish Balay         }
524187ce0cbSSatish Balay #endif
525c2760754SSatish Balay         baij_a = HD[idx];
5260bdbc534SSatish Balay         if (roworiented) {
527c2760754SSatish Balay           /*value = v + i*(stepval+bs)*bs + j*bs;*/
528187ce0cbSSatish Balay           /* value = v + (i*(stepval+bs)+j)*bs; */
529187ce0cbSSatish Balay           value = v_t;
530187ce0cbSSatish Balay           v_t  += bs;
531fef45726SSatish Balay           if (addv == ADD_VALUES) {
532c2760754SSatish Balay             for (ii=0; ii<bs; ii++,value+=stepval) {
533c2760754SSatish Balay               for (jj=ii; jj<bs2; jj+=bs) {
534fef45726SSatish Balay                 baij_a[jj]  += *value++;
535b4cc0f5aSSatish Balay               }
536b4cc0f5aSSatish Balay             }
537fef45726SSatish Balay           } else {
538c2760754SSatish Balay             for (ii=0; ii<bs; ii++,value+=stepval) {
539c2760754SSatish Balay               for (jj=ii; jj<bs2; jj+=bs) {
540fef45726SSatish Balay                 baij_a[jj]  = *value++;
541fef45726SSatish Balay               }
542fef45726SSatish Balay             }
543fef45726SSatish Balay           }
5440bdbc534SSatish Balay         } else {
5450bdbc534SSatish Balay           value = v + j*(stepval+bs)*bs + i*bs;
546fef45726SSatish Balay           if (addv == ADD_VALUES) {
547b4cc0f5aSSatish Balay             for (ii=0; ii<bs; ii++,value+=stepval,baij_a+=bs) {
5480bdbc534SSatish Balay               for (jj=0; jj<bs; jj++) {
549fef45726SSatish Balay                 baij_a[jj]  += *value++;
550fef45726SSatish Balay               }
551fef45726SSatish Balay             }
552fef45726SSatish Balay           } else {
553fef45726SSatish Balay             for (ii=0; ii<bs; ii++,value+=stepval,baij_a+=bs) {
554fef45726SSatish Balay               for (jj=0; jj<bs; jj++) {
555fef45726SSatish Balay                 baij_a[jj]  = *value++;
556fef45726SSatish Balay               }
557b4cc0f5aSSatish Balay             }
5580bdbc534SSatish Balay           }
5590bdbc534SSatish Balay         }
5600bdbc534SSatish Balay       }
5610bdbc534SSatish Balay     } else {
5620bdbc534SSatish Balay       if (!baij->donotstash) {
5630bdbc534SSatish Balay         if (roworiented) {
5648798bf22SSatish Balay           ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
5650bdbc534SSatish Balay         } else {
5668798bf22SSatish Balay           ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
5670bdbc534SSatish Balay         }
5680bdbc534SSatish Balay       }
5690bdbc534SSatish Balay     }
5700bdbc534SSatish Balay   }
5712515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
572187ce0cbSSatish Balay   baij->ht_total_ct = total_ct;
573187ce0cbSSatish Balay   baij->ht_insert_ct = insert_ct;
574187ce0cbSSatish Balay #endif
5750bdbc534SSatish Balay   PetscFunctionReturn(0);
5760bdbc534SSatish Balay }
577133cdb44SSatish Balay 
5784a2ae208SSatish Balay #undef __FUNCT__
5794a2ae208SSatish Balay #define __FUNCT__ "MatGetValues_MPIBAIJ"
580b24ad042SBarry Smith PetscErrorCode MatGetValues_MPIBAIJ(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[])
581d6de1c52SSatish Balay {
582d6de1c52SSatish Balay   Mat_MPIBAIJ    *baij = (Mat_MPIBAIJ*)mat->data;
5836849ba73SBarry Smith   PetscErrorCode ierr;
584899cda47SBarry Smith   PetscInt       bs=mat->rmap.bs,i,j,bsrstart = mat->rmap.rstart,bsrend = mat->rmap.rend;
585899cda47SBarry Smith   PetscInt       bscstart = mat->cmap.rstart,bscend = mat->cmap.rend,row,col,data;
586d6de1c52SSatish Balay 
587133cdb44SSatish Balay   PetscFunctionBegin;
588d6de1c52SSatish Balay   for (i=0; i<m; i++) {
58997e567efSBarry Smith     if (idxm[i] < 0) continue; /* SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %D",idxm[i]);*/
590899cda47SBarry Smith     if (idxm[i] >= mat->rmap.N) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",idxm[i],mat->rmap.N-1);
591d6de1c52SSatish Balay     if (idxm[i] >= bsrstart && idxm[i] < bsrend) {
592d6de1c52SSatish Balay       row = idxm[i] - bsrstart;
593d6de1c52SSatish Balay       for (j=0; j<n; j++) {
59497e567efSBarry Smith         if (idxn[j] < 0) continue; /* SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Negative column: %D",idxn[j]); */
595899cda47SBarry Smith         if (idxn[j] >= mat->cmap.N) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",idxn[j],mat->cmap.N-1);
596d6de1c52SSatish Balay         if (idxn[j] >= bscstart && idxn[j] < bscend){
597d6de1c52SSatish Balay           col = idxn[j] - bscstart;
59898dd23e9SBarry Smith           ierr = MatGetValues_SeqBAIJ(baij->A,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr);
599d64ed03dSBarry Smith         } else {
600905e6a2fSBarry Smith           if (!baij->colmap) {
601905e6a2fSBarry Smith             ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
602905e6a2fSBarry Smith           }
603aa482453SBarry Smith #if defined (PETSC_USE_CTABLE)
6040f5bd95cSBarry Smith           ierr = PetscTableFind(baij->colmap,idxn[j]/bs+1,&data);CHKERRQ(ierr);
605fa46199cSSatish Balay           data --;
60648e59246SSatish Balay #else
60748e59246SSatish Balay           data = baij->colmap[idxn[j]/bs]-1;
60848e59246SSatish Balay #endif
60948e59246SSatish Balay           if((data < 0) || (baij->garray[data/bs] != idxn[j]/bs)) *(v+i*n+j) = 0.0;
610d9d09a02SSatish Balay           else {
61148e59246SSatish Balay             col  = data + idxn[j]%bs;
61298dd23e9SBarry Smith             ierr = MatGetValues_SeqBAIJ(baij->B,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr);
613d6de1c52SSatish Balay           }
614d6de1c52SSatish Balay         }
615d6de1c52SSatish Balay       }
616d64ed03dSBarry Smith     } else {
61729bbc08cSBarry Smith       SETERRQ(PETSC_ERR_SUP,"Only local values currently supported");
618d6de1c52SSatish Balay     }
619d6de1c52SSatish Balay   }
6203a40ed3dSBarry Smith  PetscFunctionReturn(0);
621d6de1c52SSatish Balay }
622d6de1c52SSatish Balay 
6234a2ae208SSatish Balay #undef __FUNCT__
6244a2ae208SSatish Balay #define __FUNCT__ "MatNorm_MPIBAIJ"
625dfbe8321SBarry Smith PetscErrorCode MatNorm_MPIBAIJ(Mat mat,NormType type,PetscReal *nrm)
626d6de1c52SSatish Balay {
627d6de1c52SSatish Balay   Mat_MPIBAIJ    *baij = (Mat_MPIBAIJ*)mat->data;
628d6de1c52SSatish Balay   Mat_SeqBAIJ    *amat = (Mat_SeqBAIJ*)baij->A->data,*bmat = (Mat_SeqBAIJ*)baij->B->data;
629dfbe8321SBarry Smith   PetscErrorCode ierr;
630899cda47SBarry Smith   PetscInt       i,j,bs2=baij->bs2,bs=baij->A->rmap.bs,nz,row,col;
631329f5518SBarry Smith   PetscReal      sum = 0.0;
6323eda8832SBarry Smith   MatScalar      *v;
633d6de1c52SSatish Balay 
634d64ed03dSBarry Smith   PetscFunctionBegin;
635d6de1c52SSatish Balay   if (baij->size == 1) {
636064f8208SBarry Smith     ierr =  MatNorm(baij->A,type,nrm);CHKERRQ(ierr);
637d6de1c52SSatish Balay   } else {
638d6de1c52SSatish Balay     if (type == NORM_FROBENIUS) {
639d6de1c52SSatish Balay       v = amat->a;
6408a62d963SHong Zhang       nz = amat->nz*bs2;
6418a62d963SHong Zhang       for (i=0; i<nz; i++) {
642aa482453SBarry Smith #if defined(PETSC_USE_COMPLEX)
643329f5518SBarry Smith         sum += PetscRealPart(PetscConj(*v)*(*v)); v++;
644d6de1c52SSatish Balay #else
645d6de1c52SSatish Balay         sum += (*v)*(*v); v++;
646d6de1c52SSatish Balay #endif
647d6de1c52SSatish Balay       }
648d6de1c52SSatish Balay       v = bmat->a;
6498a62d963SHong Zhang       nz = bmat->nz*bs2;
6508a62d963SHong Zhang       for (i=0; i<nz; i++) {
651aa482453SBarry Smith #if defined(PETSC_USE_COMPLEX)
652329f5518SBarry Smith         sum += PetscRealPart(PetscConj(*v)*(*v)); v++;
653d6de1c52SSatish Balay #else
654d6de1c52SSatish Balay         sum += (*v)*(*v); v++;
655d6de1c52SSatish Balay #endif
656d6de1c52SSatish Balay       }
6577adad957SLisandro Dalcin       ierr = MPI_Allreduce(&sum,nrm,1,MPIU_REAL,MPI_SUM,((PetscObject)mat)->comm);CHKERRQ(ierr);
658064f8208SBarry Smith       *nrm = sqrt(*nrm);
6598a62d963SHong Zhang     } else if (type == NORM_1) { /* max column sum */
6608a62d963SHong Zhang       PetscReal *tmp,*tmp2;
661899cda47SBarry Smith       PetscInt  *jj,*garray=baij->garray,cstart=baij->rstartbs;
662899cda47SBarry Smith       ierr = PetscMalloc((2*mat->cmap.N+1)*sizeof(PetscReal),&tmp);CHKERRQ(ierr);
663899cda47SBarry Smith       tmp2 = tmp + mat->cmap.N;
664899cda47SBarry Smith       ierr = PetscMemzero(tmp,mat->cmap.N*sizeof(PetscReal));CHKERRQ(ierr);
6658a62d963SHong Zhang       v = amat->a; jj = amat->j;
6668a62d963SHong Zhang       for (i=0; i<amat->nz; i++) {
6678a62d963SHong Zhang         for (j=0; j<bs; j++){
6688a62d963SHong Zhang           col = bs*(cstart + *jj) + j; /* column index */
6698a62d963SHong Zhang           for (row=0; row<bs; row++){
6708a62d963SHong Zhang             tmp[col] += PetscAbsScalar(*v);  v++;
6718a62d963SHong Zhang           }
6728a62d963SHong Zhang         }
6738a62d963SHong Zhang         jj++;
6748a62d963SHong Zhang       }
6758a62d963SHong Zhang       v = bmat->a; jj = bmat->j;
6768a62d963SHong Zhang       for (i=0; i<bmat->nz; i++) {
6778a62d963SHong Zhang         for (j=0; j<bs; j++){
6788a62d963SHong Zhang           col = bs*garray[*jj] + j;
6798a62d963SHong Zhang           for (row=0; row<bs; row++){
6808a62d963SHong Zhang             tmp[col] += PetscAbsScalar(*v); v++;
6818a62d963SHong Zhang           }
6828a62d963SHong Zhang         }
6838a62d963SHong Zhang         jj++;
6848a62d963SHong Zhang       }
6857adad957SLisandro Dalcin       ierr = MPI_Allreduce(tmp,tmp2,mat->cmap.N,MPIU_REAL,MPI_SUM,((PetscObject)mat)->comm);CHKERRQ(ierr);
6868a62d963SHong Zhang       *nrm = 0.0;
687899cda47SBarry Smith       for (j=0; j<mat->cmap.N; j++) {
6888a62d963SHong Zhang         if (tmp2[j] > *nrm) *nrm = tmp2[j];
6898a62d963SHong Zhang       }
6908a62d963SHong Zhang       ierr = PetscFree(tmp);CHKERRQ(ierr);
6918a62d963SHong Zhang     } else if (type == NORM_INFINITY) { /* max row sum */
692577dd1f9SKris Buschelman       PetscReal *sums;
693577dd1f9SKris Buschelman       ierr = PetscMalloc(bs*sizeof(PetscReal),&sums);CHKERRQ(ierr)
6948a62d963SHong Zhang       sum = 0.0;
6958a62d963SHong Zhang       for (j=0; j<amat->mbs; j++) {
6968a62d963SHong Zhang         for (row=0; row<bs; row++) sums[row] = 0.0;
6978a62d963SHong Zhang         v = amat->a + bs2*amat->i[j];
6988a62d963SHong Zhang         nz = amat->i[j+1]-amat->i[j];
6998a62d963SHong Zhang         for (i=0; i<nz; i++) {
7008a62d963SHong Zhang           for (col=0; col<bs; col++){
7018a62d963SHong Zhang             for (row=0; row<bs; row++){
7028a62d963SHong Zhang               sums[row] += PetscAbsScalar(*v); v++;
7038a62d963SHong Zhang             }
7048a62d963SHong Zhang           }
7058a62d963SHong Zhang         }
7068a62d963SHong Zhang         v = bmat->a + bs2*bmat->i[j];
7078a62d963SHong Zhang         nz = bmat->i[j+1]-bmat->i[j];
7088a62d963SHong Zhang         for (i=0; i<nz; i++) {
7098a62d963SHong Zhang           for (col=0; col<bs; col++){
7108a62d963SHong Zhang             for (row=0; row<bs; row++){
7118a62d963SHong Zhang               sums[row] += PetscAbsScalar(*v); v++;
7128a62d963SHong Zhang             }
7138a62d963SHong Zhang           }
7148a62d963SHong Zhang         }
7158a62d963SHong Zhang         for (row=0; row<bs; row++){
7168a62d963SHong Zhang           if (sums[row] > sum) sum = sums[row];
7178a62d963SHong Zhang         }
7188a62d963SHong Zhang       }
7197adad957SLisandro Dalcin       ierr = MPI_Allreduce(&sum,nrm,1,MPIU_REAL,MPI_MAX,((PetscObject)mat)->comm);CHKERRQ(ierr);
720577dd1f9SKris Buschelman       ierr = PetscFree(sums);CHKERRQ(ierr);
721d64ed03dSBarry Smith     } else {
72229bbc08cSBarry Smith       SETERRQ(PETSC_ERR_SUP,"No support for this norm yet");
723d6de1c52SSatish Balay     }
724d64ed03dSBarry Smith   }
7253a40ed3dSBarry Smith   PetscFunctionReturn(0);
726d6de1c52SSatish Balay }
72757b952d6SSatish Balay 
728fef45726SSatish Balay /*
729fef45726SSatish Balay   Creates the hash table, and sets the table
730fef45726SSatish Balay   This table is created only once.
731fef45726SSatish Balay   If new entried need to be added to the matrix
732fef45726SSatish Balay   then the hash table has to be destroyed and
733fef45726SSatish Balay   recreated.
734fef45726SSatish Balay */
7354a2ae208SSatish Balay #undef __FUNCT__
7364a2ae208SSatish Balay #define __FUNCT__ "MatCreateHashTable_MPIBAIJ_Private"
737dfbe8321SBarry Smith PetscErrorCode MatCreateHashTable_MPIBAIJ_Private(Mat mat,PetscReal factor)
738596b8d2eSBarry Smith {
739596b8d2eSBarry Smith   Mat_MPIBAIJ    *baij = (Mat_MPIBAIJ*)mat->data;
740596b8d2eSBarry Smith   Mat            A = baij->A,B=baij->B;
741596b8d2eSBarry Smith   Mat_SeqBAIJ    *a=(Mat_SeqBAIJ *)A->data,*b=(Mat_SeqBAIJ *)B->data;
742b24ad042SBarry Smith   PetscInt       i,j,k,nz=a->nz+b->nz,h1,*ai=a->i,*aj=a->j,*bi=b->i,*bj=b->j;
7436849ba73SBarry Smith   PetscErrorCode ierr;
744899cda47SBarry Smith   PetscInt       size,bs2=baij->bs2,rstart=baij->rstartbs;
745899cda47SBarry Smith   PetscInt       cstart=baij->cstartbs,*garray=baij->garray,row,col,Nbs=baij->Nbs;
746b24ad042SBarry Smith   PetscInt       *HT,key;
7473eda8832SBarry Smith   MatScalar      **HD;
748329f5518SBarry Smith   PetscReal      tmp;
7496cf91177SBarry Smith #if defined(PETSC_USE_INFO)
750b24ad042SBarry Smith   PetscInt       ct=0,max=0;
7514a15367fSSatish Balay #endif
752fef45726SSatish Balay 
753d64ed03dSBarry Smith   PetscFunctionBegin;
754b24ad042SBarry Smith   baij->ht_size=(PetscInt)(factor*nz);
7550bdbc534SSatish Balay   size = baij->ht_size;
756fef45726SSatish Balay 
7570bdbc534SSatish Balay   if (baij->ht) {
7580bdbc534SSatish Balay     PetscFunctionReturn(0);
759596b8d2eSBarry Smith   }
7600bdbc534SSatish Balay 
761fef45726SSatish Balay   /* Allocate Memory for Hash Table */
762b24ad042SBarry Smith   ierr     = PetscMalloc((size)*(sizeof(PetscInt)+sizeof(MatScalar*))+1,&baij->hd);CHKERRQ(ierr);
763b24ad042SBarry Smith   baij->ht = (PetscInt*)(baij->hd + size);
764b9e4cc15SSatish Balay   HD       = baij->hd;
765a07cd24cSSatish Balay   HT       = baij->ht;
766b9e4cc15SSatish Balay 
767b9e4cc15SSatish Balay 
768b24ad042SBarry Smith   ierr = PetscMemzero(HD,size*(sizeof(PetscInt)+sizeof(PetscScalar*)));CHKERRQ(ierr);
7690bdbc534SSatish Balay 
770596b8d2eSBarry Smith 
771596b8d2eSBarry Smith   /* Loop Over A */
7720bdbc534SSatish Balay   for (i=0; i<a->mbs; i++) {
773596b8d2eSBarry Smith     for (j=ai[i]; j<ai[i+1]; j++) {
7740bdbc534SSatish Balay       row = i+rstart;
7750bdbc534SSatish Balay       col = aj[j]+cstart;
776596b8d2eSBarry Smith 
777187ce0cbSSatish Balay       key = row*Nbs + col + 1;
778c2760754SSatish Balay       h1  = HASH(size,key,tmp);
7790bdbc534SSatish Balay       for (k=0; k<size; k++){
780958c9bccSBarry Smith         if (!HT[(h1+k)%size]) {
7810bdbc534SSatish Balay           HT[(h1+k)%size] = key;
7820bdbc534SSatish Balay           HD[(h1+k)%size] = a->a + j*bs2;
783596b8d2eSBarry Smith           break;
7846cf91177SBarry Smith #if defined(PETSC_USE_INFO)
785187ce0cbSSatish Balay         } else {
786187ce0cbSSatish Balay           ct++;
787187ce0cbSSatish Balay #endif
788596b8d2eSBarry Smith         }
789187ce0cbSSatish Balay       }
7906cf91177SBarry Smith #if defined(PETSC_USE_INFO)
791187ce0cbSSatish Balay       if (k> max) max = k;
792187ce0cbSSatish Balay #endif
793596b8d2eSBarry Smith     }
794596b8d2eSBarry Smith   }
795596b8d2eSBarry Smith   /* Loop Over B */
7960bdbc534SSatish Balay   for (i=0; i<b->mbs; i++) {
797596b8d2eSBarry Smith     for (j=bi[i]; j<bi[i+1]; j++) {
7980bdbc534SSatish Balay       row = i+rstart;
7990bdbc534SSatish Balay       col = garray[bj[j]];
800187ce0cbSSatish Balay       key = row*Nbs + col + 1;
801c2760754SSatish Balay       h1  = HASH(size,key,tmp);
8020bdbc534SSatish Balay       for (k=0; k<size; k++){
803958c9bccSBarry Smith         if (!HT[(h1+k)%size]) {
8040bdbc534SSatish Balay           HT[(h1+k)%size] = key;
8050bdbc534SSatish Balay           HD[(h1+k)%size] = b->a + j*bs2;
806596b8d2eSBarry Smith           break;
8076cf91177SBarry Smith #if defined(PETSC_USE_INFO)
808187ce0cbSSatish Balay         } else {
809187ce0cbSSatish Balay           ct++;
810187ce0cbSSatish Balay #endif
811596b8d2eSBarry Smith         }
812187ce0cbSSatish Balay       }
8136cf91177SBarry Smith #if defined(PETSC_USE_INFO)
814187ce0cbSSatish Balay       if (k> max) max = k;
815187ce0cbSSatish Balay #endif
816596b8d2eSBarry Smith     }
817596b8d2eSBarry Smith   }
818596b8d2eSBarry Smith 
819596b8d2eSBarry Smith   /* Print Summary */
8206cf91177SBarry Smith #if defined(PETSC_USE_INFO)
821c38d4ed2SBarry Smith   for (i=0,j=0; i<size; i++) {
822596b8d2eSBarry Smith     if (HT[i]) {j++;}
823c38d4ed2SBarry Smith   }
8241e2582c4SBarry Smith   ierr = PetscInfo2(mat,"Average Search = %5.2f,max search = %D\n",(!j)? 0.0:((PetscReal)(ct+j))/j,max);CHKERRQ(ierr);
825187ce0cbSSatish Balay #endif
8263a40ed3dSBarry Smith   PetscFunctionReturn(0);
827596b8d2eSBarry Smith }
82857b952d6SSatish Balay 
8294a2ae208SSatish Balay #undef __FUNCT__
8304a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyBegin_MPIBAIJ"
831dfbe8321SBarry Smith PetscErrorCode MatAssemblyBegin_MPIBAIJ(Mat mat,MatAssemblyType mode)
832bbb85fb3SSatish Balay {
833bbb85fb3SSatish Balay   Mat_MPIBAIJ    *baij = (Mat_MPIBAIJ*)mat->data;
834dfbe8321SBarry Smith   PetscErrorCode ierr;
835b24ad042SBarry Smith   PetscInt       nstash,reallocs;
836bbb85fb3SSatish Balay   InsertMode     addv;
837bbb85fb3SSatish Balay 
838bbb85fb3SSatish Balay   PetscFunctionBegin;
839bbb85fb3SSatish Balay   if (baij->donotstash) {
840bbb85fb3SSatish Balay     PetscFunctionReturn(0);
841bbb85fb3SSatish Balay   }
842bbb85fb3SSatish Balay 
843bbb85fb3SSatish Balay   /* make sure all processors are either in INSERTMODE or ADDMODE */
8447adad957SLisandro Dalcin   ierr = MPI_Allreduce(&mat->insertmode,&addv,1,MPI_INT,MPI_BOR,((PetscObject)mat)->comm);CHKERRQ(ierr);
845bbb85fb3SSatish Balay   if (addv == (ADD_VALUES|INSERT_VALUES)) {
84629bbc08cSBarry Smith     SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Some processors inserted others added");
847bbb85fb3SSatish Balay   }
848bbb85fb3SSatish Balay   mat->insertmode = addv; /* in case this processor had no cache */
849bbb85fb3SSatish Balay 
8501e2582c4SBarry Smith   ierr = MatStashScatterBegin_Private(mat,&mat->stash,mat->rmap.range);CHKERRQ(ierr);
8511e2582c4SBarry Smith   ierr = MatStashScatterBegin_Private(mat,&mat->bstash,baij->rangebs);CHKERRQ(ierr);
8528798bf22SSatish Balay   ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr);
8531e2582c4SBarry Smith   ierr = PetscInfo2(mat,"Stash has %D entries,uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr);
85446680499SSatish Balay   ierr = MatStashGetInfo_Private(&mat->bstash,&nstash,&reallocs);CHKERRQ(ierr);
8551e2582c4SBarry Smith   ierr = PetscInfo2(mat,"Block-Stash has %D entries, uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr);
856bbb85fb3SSatish Balay   PetscFunctionReturn(0);
857bbb85fb3SSatish Balay }
858bbb85fb3SSatish Balay 
8594a2ae208SSatish Balay #undef __FUNCT__
8604a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyEnd_MPIBAIJ"
861dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_MPIBAIJ(Mat mat,MatAssemblyType mode)
862bbb85fb3SSatish Balay {
863bbb85fb3SSatish Balay   Mat_MPIBAIJ    *baij=(Mat_MPIBAIJ*)mat->data;
86491c97fd4SSatish Balay   Mat_SeqBAIJ    *a=(Mat_SeqBAIJ*)baij->A->data;
8656849ba73SBarry Smith   PetscErrorCode ierr;
866b24ad042SBarry Smith   PetscInt       i,j,rstart,ncols,flg,bs2=baij->bs2;
867e44c0bd4SBarry Smith   PetscInt       *row,*col;
868e44c0bd4SBarry Smith   PetscTruth     r1,r2,r3,other_disassembled;
8693eda8832SBarry Smith   MatScalar      *val;
870bbb85fb3SSatish Balay   InsertMode     addv = mat->insertmode;
871b24ad042SBarry Smith   PetscMPIInt    n;
872bbb85fb3SSatish Balay 
87391c97fd4SSatish Balay   /* do not use 'b=(Mat_SeqBAIJ*)baij->B->data' as B can be reset in disassembly */
874bbb85fb3SSatish Balay   PetscFunctionBegin;
875bbb85fb3SSatish Balay   if (!baij->donotstash) {
876a2d1c673SSatish Balay     while (1) {
8778798bf22SSatish Balay       ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr);
878a2d1c673SSatish Balay       if (!flg) break;
879a2d1c673SSatish Balay 
880bbb85fb3SSatish Balay       for (i=0; i<n;) {
881bbb85fb3SSatish Balay         /* Now identify the consecutive vals belonging to the same row */
882bbb85fb3SSatish Balay         for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; }
883bbb85fb3SSatish Balay         if (j < n) ncols = j-i;
884bbb85fb3SSatish Balay         else       ncols = n-i;
885bbb85fb3SSatish Balay         /* Now assemble all these values with a single function call */
886*97e5c40aSBarry Smith         ierr = MatSetValues_MPIBAIJ(mat,1,row+i,ncols,col+i,val+i,addv);CHKERRQ(ierr);
887bbb85fb3SSatish Balay         i = j;
888bbb85fb3SSatish Balay       }
889bbb85fb3SSatish Balay     }
8908798bf22SSatish Balay     ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr);
891a2d1c673SSatish Balay     /* Now process the block-stash. Since the values are stashed column-oriented,
892a2d1c673SSatish Balay        set the roworiented flag to column oriented, and after MatSetValues()
893a2d1c673SSatish Balay        restore the original flags */
894a2d1c673SSatish Balay     r1 = baij->roworiented;
895a2d1c673SSatish Balay     r2 = a->roworiented;
89691c97fd4SSatish Balay     r3 = ((Mat_SeqBAIJ*)baij->B->data)->roworiented;
8977c922b88SBarry Smith     baij->roworiented = PETSC_FALSE;
8987c922b88SBarry Smith     a->roworiented    = PETSC_FALSE;
89991c97fd4SSatish Balay     (((Mat_SeqBAIJ*)baij->B->data))->roworiented    = PETSC_FALSE; /* b->roworiented */
900a2d1c673SSatish Balay     while (1) {
9018798bf22SSatish Balay       ierr = MatStashScatterGetMesg_Private(&mat->bstash,&n,&row,&col,&val,&flg);CHKERRQ(ierr);
902a2d1c673SSatish Balay       if (!flg) break;
903a2d1c673SSatish Balay 
904a2d1c673SSatish Balay       for (i=0; i<n;) {
905a2d1c673SSatish Balay         /* Now identify the consecutive vals belonging to the same row */
906a2d1c673SSatish Balay         for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; }
907a2d1c673SSatish Balay         if (j < n) ncols = j-i;
908a2d1c673SSatish Balay         else       ncols = n-i;
909*97e5c40aSBarry Smith         ierr = MatSetValuesBlocked_MPIBAIJ(mat,1,row+i,ncols,col+i,val+i*bs2,addv);CHKERRQ(ierr);
910a2d1c673SSatish Balay         i = j;
911a2d1c673SSatish Balay       }
912a2d1c673SSatish Balay     }
9138798bf22SSatish Balay     ierr = MatStashScatterEnd_Private(&mat->bstash);CHKERRQ(ierr);
914a2d1c673SSatish Balay     baij->roworiented = r1;
915a2d1c673SSatish Balay     a->roworiented    = r2;
91691c97fd4SSatish Balay     ((Mat_SeqBAIJ*)baij->B->data)->roworiented    = r3; /* b->roworiented */
917bbb85fb3SSatish Balay   }
918bbb85fb3SSatish Balay 
919bbb85fb3SSatish Balay   ierr = MatAssemblyBegin(baij->A,mode);CHKERRQ(ierr);
920bbb85fb3SSatish Balay   ierr = MatAssemblyEnd(baij->A,mode);CHKERRQ(ierr);
921bbb85fb3SSatish Balay 
922bbb85fb3SSatish Balay   /* determine if any processor has disassembled, if so we must
923bbb85fb3SSatish Balay      also disassemble ourselfs, in order that we may reassemble. */
924bbb85fb3SSatish Balay   /*
925bbb85fb3SSatish Balay      if nonzero structure of submatrix B cannot change then we know that
926bbb85fb3SSatish Balay      no processor disassembled thus we can skip this stuff
927bbb85fb3SSatish Balay   */
928bbb85fb3SSatish Balay   if (!((Mat_SeqBAIJ*)baij->B->data)->nonew)  {
9297adad957SLisandro Dalcin     ierr = MPI_Allreduce(&mat->was_assembled,&other_disassembled,1,MPI_INT,MPI_PROD,((PetscObject)mat)->comm);CHKERRQ(ierr);
930bbb85fb3SSatish Balay     if (mat->was_assembled && !other_disassembled) {
931bbb85fb3SSatish Balay       ierr = DisAssemble_MPIBAIJ(mat);CHKERRQ(ierr);
932bbb85fb3SSatish Balay     }
933bbb85fb3SSatish Balay   }
934bbb85fb3SSatish Balay 
935bbb85fb3SSatish Balay   if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) {
936bbb85fb3SSatish Balay     ierr = MatSetUpMultiply_MPIBAIJ(mat);CHKERRQ(ierr);
937bbb85fb3SSatish Balay   }
93891c97fd4SSatish Balay   ((Mat_SeqBAIJ*)baij->B->data)->compressedrow.use = PETSC_TRUE; /* b->compressedrow.use */
939bbb85fb3SSatish Balay   ierr = MatAssemblyBegin(baij->B,mode);CHKERRQ(ierr);
940bbb85fb3SSatish Balay   ierr = MatAssemblyEnd(baij->B,mode);CHKERRQ(ierr);
941bbb85fb3SSatish Balay 
9426cf91177SBarry Smith #if defined(PETSC_USE_INFO)
943bbb85fb3SSatish Balay   if (baij->ht && mode== MAT_FINAL_ASSEMBLY) {
9441e2582c4SBarry Smith     ierr = PetscInfo1(mat,"Average Hash Table Search in MatSetValues = %5.2f\n",((PetscReal)baij->ht_total_ct)/baij->ht_insert_ct);CHKERRQ(ierr);
945bbb85fb3SSatish Balay     baij->ht_total_ct  = 0;
946bbb85fb3SSatish Balay     baij->ht_insert_ct = 0;
947bbb85fb3SSatish Balay   }
948bbb85fb3SSatish Balay #endif
949bbb85fb3SSatish Balay   if (baij->ht_flag && !baij->ht && mode == MAT_FINAL_ASSEMBLY) {
950bbb85fb3SSatish Balay     ierr = MatCreateHashTable_MPIBAIJ_Private(mat,baij->ht_fact);CHKERRQ(ierr);
951bbb85fb3SSatish Balay     mat->ops->setvalues        = MatSetValues_MPIBAIJ_HT;
952bbb85fb3SSatish Balay     mat->ops->setvaluesblocked = MatSetValuesBlocked_MPIBAIJ_HT;
953bbb85fb3SSatish Balay   }
954bbb85fb3SSatish Balay 
955606d414cSSatish Balay   ierr = PetscFree(baij->rowvalues);CHKERRQ(ierr);
956606d414cSSatish Balay   baij->rowvalues = 0;
957bbb85fb3SSatish Balay   PetscFunctionReturn(0);
958bbb85fb3SSatish Balay }
95957b952d6SSatish Balay 
9604a2ae208SSatish Balay #undef __FUNCT__
9614a2ae208SSatish Balay #define __FUNCT__ "MatView_MPIBAIJ_ASCIIorDraworSocket"
9626849ba73SBarry Smith static PetscErrorCode MatView_MPIBAIJ_ASCIIorDraworSocket(Mat mat,PetscViewer viewer)
96357b952d6SSatish Balay {
96457b952d6SSatish Balay   Mat_MPIBAIJ       *baij = (Mat_MPIBAIJ*)mat->data;
965dfbe8321SBarry Smith   PetscErrorCode    ierr;
966b24ad042SBarry Smith   PetscMPIInt       size = baij->size,rank = baij->rank;
967899cda47SBarry Smith   PetscInt          bs = mat->rmap.bs;
96832077d6dSBarry Smith   PetscTruth        iascii,isdraw;
969b0a32e0cSBarry Smith   PetscViewer       sviewer;
970f3ef73ceSBarry Smith   PetscViewerFormat format;
97157b952d6SSatish Balay 
972d64ed03dSBarry Smith   PetscFunctionBegin;
97332077d6dSBarry Smith   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&iascii);CHKERRQ(ierr);
974fb9695e5SSatish Balay   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr);
97532077d6dSBarry Smith   if (iascii) {
976b0a32e0cSBarry Smith     ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr);
977456192e2SBarry Smith     if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) {
9784e220ebcSLois Curfman McInnes       MatInfo info;
9797adad957SLisandro Dalcin       ierr = MPI_Comm_rank(((PetscObject)mat)->comm,&rank);CHKERRQ(ierr);
980d41123aaSBarry Smith       ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr);
98177431f27SBarry Smith       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Local rows %D nz %D nz alloced %D bs %D mem %D\n",
982899cda47SBarry Smith               rank,mat->rmap.N,(PetscInt)info.nz_used*bs,(PetscInt)info.nz_allocated*bs,
983899cda47SBarry Smith               mat->rmap.bs,(PetscInt)info.memory);CHKERRQ(ierr);
984d132466eSBarry Smith       ierr = MatGetInfo(baij->A,MAT_LOCAL,&info);CHKERRQ(ierr);
98577431f27SBarry Smith       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] on-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used*bs);CHKERRQ(ierr);
986d132466eSBarry Smith       ierr = MatGetInfo(baij->B,MAT_LOCAL,&info);CHKERRQ(ierr);
98777431f27SBarry Smith       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] off-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used*bs);CHKERRQ(ierr);
988b0a32e0cSBarry Smith       ierr = PetscViewerFlush(viewer);CHKERRQ(ierr);
98907d81ca4SBarry Smith       ierr = PetscViewerASCIIPrintf(viewer,"Information on VecScatter used in matrix-vector product: \n");CHKERRQ(ierr);
99057b952d6SSatish Balay       ierr = VecScatterView(baij->Mvctx,viewer);CHKERRQ(ierr);
9913a40ed3dSBarry Smith       PetscFunctionReturn(0);
992fb9695e5SSatish Balay     } else if (format == PETSC_VIEWER_ASCII_INFO) {
99377431f27SBarry Smith       ierr = PetscViewerASCIIPrintf(viewer,"  block size is %D\n",bs);CHKERRQ(ierr);
9943a40ed3dSBarry Smith       PetscFunctionReturn(0);
99504929863SHong Zhang     } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) {
99604929863SHong Zhang       PetscFunctionReturn(0);
99757b952d6SSatish Balay     }
99857b952d6SSatish Balay   }
99957b952d6SSatish Balay 
10000f5bd95cSBarry Smith   if (isdraw) {
1001b0a32e0cSBarry Smith     PetscDraw       draw;
100257b952d6SSatish Balay     PetscTruth isnull;
1003b0a32e0cSBarry Smith     ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr);
1004b0a32e0cSBarry Smith     ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); if (isnull) PetscFunctionReturn(0);
100557b952d6SSatish Balay   }
100657b952d6SSatish Balay 
100757b952d6SSatish Balay   if (size == 1) {
10087adad957SLisandro Dalcin     ierr = PetscObjectSetName((PetscObject)baij->A,((PetscObject)mat)->name);CHKERRQ(ierr);
100957b952d6SSatish Balay     ierr = MatView(baij->A,viewer);CHKERRQ(ierr);
1010d64ed03dSBarry Smith   } else {
101157b952d6SSatish Balay     /* assemble the entire matrix onto first processor. */
101257b952d6SSatish Balay     Mat         A;
101357b952d6SSatish Balay     Mat_SeqBAIJ *Aloc;
1014899cda47SBarry Smith     PetscInt    M = mat->rmap.N,N = mat->cmap.N,*ai,*aj,col,i,j,k,*rvals,mbs = baij->mbs;
10153eda8832SBarry Smith     MatScalar   *a;
101657b952d6SSatish Balay 
1017f204ca49SKris Buschelman     /* Here we are creating a temporary matrix, so will assume MPIBAIJ is acceptable */
1018f204ca49SKris Buschelman     /* Perhaps this should be the type of mat? */
10197adad957SLisandro Dalcin     ierr = MatCreate(((PetscObject)mat)->comm,&A);CHKERRQ(ierr);
102057b952d6SSatish Balay     if (!rank) {
1021f69a0ea3SMatthew Knepley       ierr = MatSetSizes(A,M,N,M,N);CHKERRQ(ierr);
1022d64ed03dSBarry Smith     } else {
1023f69a0ea3SMatthew Knepley       ierr = MatSetSizes(A,0,0,M,N);CHKERRQ(ierr);
102457b952d6SSatish Balay     }
1025f204ca49SKris Buschelman     ierr = MatSetType(A,MATMPIBAIJ);CHKERRQ(ierr);
1026899cda47SBarry Smith     ierr = MatMPIBAIJSetPreallocation(A,mat->rmap.bs,0,PETSC_NULL,0,PETSC_NULL);CHKERRQ(ierr);
102752e6d16bSBarry Smith     ierr = PetscLogObjectParent(mat,A);CHKERRQ(ierr);
102857b952d6SSatish Balay 
102957b952d6SSatish Balay     /* copy over the A part */
103057b952d6SSatish Balay     Aloc = (Mat_SeqBAIJ*)baij->A->data;
103157b952d6SSatish Balay     ai   = Aloc->i; aj = Aloc->j; a = Aloc->a;
1032b24ad042SBarry Smith     ierr = PetscMalloc(bs*sizeof(PetscInt),&rvals);CHKERRQ(ierr);
103357b952d6SSatish Balay 
103457b952d6SSatish Balay     for (i=0; i<mbs; i++) {
1035899cda47SBarry Smith       rvals[0] = bs*(baij->rstartbs + i);
103657b952d6SSatish Balay       for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; }
103757b952d6SSatish Balay       for (j=ai[i]; j<ai[i+1]; j++) {
1038899cda47SBarry Smith         col = (baij->cstartbs+aj[j])*bs;
103957b952d6SSatish Balay         for (k=0; k<bs; k++) {
1040*97e5c40aSBarry Smith           ierr = MatSetValues_MPIBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr);
1041cee3aa6bSSatish Balay           col++; a += bs;
104257b952d6SSatish Balay         }
104357b952d6SSatish Balay       }
104457b952d6SSatish Balay     }
104557b952d6SSatish Balay     /* copy over the B part */
104657b952d6SSatish Balay     Aloc = (Mat_SeqBAIJ*)baij->B->data;
104757b952d6SSatish Balay     ai = Aloc->i; aj = Aloc->j; a = Aloc->a;
104857b952d6SSatish Balay     for (i=0; i<mbs; i++) {
1049899cda47SBarry Smith       rvals[0] = bs*(baij->rstartbs + i);
105057b952d6SSatish Balay       for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; }
105157b952d6SSatish Balay       for (j=ai[i]; j<ai[i+1]; j++) {
105257b952d6SSatish Balay         col = baij->garray[aj[j]]*bs;
105357b952d6SSatish Balay         for (k=0; k<bs; k++) {
1054*97e5c40aSBarry Smith           ierr = MatSetValues_MPIBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr);
1055cee3aa6bSSatish Balay           col++; a += bs;
105657b952d6SSatish Balay         }
105757b952d6SSatish Balay       }
105857b952d6SSatish Balay     }
1059606d414cSSatish Balay     ierr = PetscFree(rvals);CHKERRQ(ierr);
10606d4a8577SBarry Smith     ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
10616d4a8577SBarry Smith     ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
106255843e3eSBarry Smith     /*
106355843e3eSBarry Smith        Everyone has to call to draw the matrix since the graphics waits are
1064b0a32e0cSBarry Smith        synchronized across all processors that share the PetscDraw object
106555843e3eSBarry Smith     */
1066b0a32e0cSBarry Smith     ierr = PetscViewerGetSingleton(viewer,&sviewer);CHKERRQ(ierr);
1067f14a1c24SBarry Smith     if (!rank) {
10687adad957SLisandro Dalcin       ierr = PetscObjectSetName((PetscObject)((Mat_MPIBAIJ*)(A->data))->A,((PetscObject)mat)->name);CHKERRQ(ierr);
10696831982aSBarry Smith       ierr = MatView(((Mat_MPIBAIJ*)(A->data))->A,sviewer);CHKERRQ(ierr);
107057b952d6SSatish Balay     }
1071b0a32e0cSBarry Smith     ierr = PetscViewerRestoreSingleton(viewer,&sviewer);CHKERRQ(ierr);
107257b952d6SSatish Balay     ierr = MatDestroy(A);CHKERRQ(ierr);
107357b952d6SSatish Balay   }
10743a40ed3dSBarry Smith   PetscFunctionReturn(0);
107557b952d6SSatish Balay }
107657b952d6SSatish Balay 
10774a2ae208SSatish Balay #undef __FUNCT__
10784a2ae208SSatish Balay #define __FUNCT__ "MatView_MPIBAIJ"
1079dfbe8321SBarry Smith PetscErrorCode MatView_MPIBAIJ(Mat mat,PetscViewer viewer)
108057b952d6SSatish Balay {
1081dfbe8321SBarry Smith   PetscErrorCode ierr;
108232077d6dSBarry Smith   PetscTruth     iascii,isdraw,issocket,isbinary;
108357b952d6SSatish Balay 
1084d64ed03dSBarry Smith   PetscFunctionBegin;
108532077d6dSBarry Smith   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&iascii);CHKERRQ(ierr);
1086fb9695e5SSatish Balay   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr);
1087b0a32e0cSBarry Smith   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_SOCKET,&issocket);CHKERRQ(ierr);
1088fb9695e5SSatish Balay   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_BINARY,&isbinary);CHKERRQ(ierr);
108932077d6dSBarry Smith   if (iascii || isdraw || issocket || isbinary) {
10907b2a1423SBarry Smith     ierr = MatView_MPIBAIJ_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr);
10915cd90555SBarry Smith   } else {
109279a5c55eSBarry Smith     SETERRQ1(PETSC_ERR_SUP,"Viewer type %s not supported by MPIBAIJ matrices",((PetscObject)viewer)->type_name);
109357b952d6SSatish Balay   }
10943a40ed3dSBarry Smith   PetscFunctionReturn(0);
109557b952d6SSatish Balay }
109657b952d6SSatish Balay 
10974a2ae208SSatish Balay #undef __FUNCT__
10984a2ae208SSatish Balay #define __FUNCT__ "MatDestroy_MPIBAIJ"
1099dfbe8321SBarry Smith PetscErrorCode MatDestroy_MPIBAIJ(Mat mat)
110079bdfe76SSatish Balay {
110179bdfe76SSatish Balay   Mat_MPIBAIJ    *baij = (Mat_MPIBAIJ*)mat->data;
1102dfbe8321SBarry Smith   PetscErrorCode ierr;
110379bdfe76SSatish Balay 
1104d64ed03dSBarry Smith   PetscFunctionBegin;
1105aa482453SBarry Smith #if defined(PETSC_USE_LOG)
1106899cda47SBarry Smith   PetscLogObjectState((PetscObject)mat,"Rows=%D,Cols=%D",mat->rmap.N,mat->cmap.N);
110779bdfe76SSatish Balay #endif
11088798bf22SSatish Balay   ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr);
11098798bf22SSatish Balay   ierr = MatStashDestroy_Private(&mat->bstash);CHKERRQ(ierr);
111079bdfe76SSatish Balay   ierr = MatDestroy(baij->A);CHKERRQ(ierr);
111179bdfe76SSatish Balay   ierr = MatDestroy(baij->B);CHKERRQ(ierr);
1112aa482453SBarry Smith #if defined (PETSC_USE_CTABLE)
11139c666560SBarry Smith   if (baij->colmap) {ierr = PetscTableDestroy(baij->colmap);CHKERRQ(ierr);}
111448e59246SSatish Balay #else
111505b42c5fSBarry Smith   ierr = PetscFree(baij->colmap);CHKERRQ(ierr);
111648e59246SSatish Balay #endif
111705b42c5fSBarry Smith   ierr = PetscFree(baij->garray);CHKERRQ(ierr);
1118606d414cSSatish Balay   if (baij->lvec)   {ierr = VecDestroy(baij->lvec);CHKERRQ(ierr);}
1119606d414cSSatish Balay   if (baij->Mvctx)  {ierr = VecScatterDestroy(baij->Mvctx);CHKERRQ(ierr);}
112005b42c5fSBarry Smith   ierr = PetscFree(baij->rowvalues);CHKERRQ(ierr);
112105b42c5fSBarry Smith   ierr = PetscFree(baij->barray);CHKERRQ(ierr);
112205b42c5fSBarry Smith   ierr = PetscFree(baij->hd);CHKERRQ(ierr);
1123899cda47SBarry Smith   ierr = PetscFree(baij->rangebs);CHKERRQ(ierr);
1124606d414cSSatish Balay   ierr = PetscFree(baij);CHKERRQ(ierr);
1125901853e0SKris Buschelman 
1126dbd8c25aSHong Zhang   ierr = PetscObjectChangeTypeName((PetscObject)mat,0);CHKERRQ(ierr);
1127901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatStoreValues_C","",PETSC_NULL);CHKERRQ(ierr);
1128901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatRetrieveValues_C","",PETSC_NULL);CHKERRQ(ierr);
1129901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatGetDiagonalBlock_C","",PETSC_NULL);CHKERRQ(ierr);
1130901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPIBAIJSetPreallocation_C","",PETSC_NULL);CHKERRQ(ierr);
1131aac34f13SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPIBAIJSetPreallocationCSR_C","",PETSC_NULL);CHKERRQ(ierr);
1132901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDiagonalScaleLocal_C","",PETSC_NULL);CHKERRQ(ierr);
1133901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatSetHashTableFactor_C","",PETSC_NULL);CHKERRQ(ierr);
11343a40ed3dSBarry Smith   PetscFunctionReturn(0);
113579bdfe76SSatish Balay }
113679bdfe76SSatish Balay 
11374a2ae208SSatish Balay #undef __FUNCT__
11384a2ae208SSatish Balay #define __FUNCT__ "MatMult_MPIBAIJ"
1139dfbe8321SBarry Smith PetscErrorCode MatMult_MPIBAIJ(Mat A,Vec xx,Vec yy)
1140cee3aa6bSSatish Balay {
1141cee3aa6bSSatish Balay   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)A->data;
1142dfbe8321SBarry Smith   PetscErrorCode ierr;
1143b24ad042SBarry Smith   PetscInt       nt;
1144cee3aa6bSSatish Balay 
1145d64ed03dSBarry Smith   PetscFunctionBegin;
1146e1311b90SBarry Smith   ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr);
1147899cda47SBarry Smith   if (nt != A->cmap.n) {
114829bbc08cSBarry Smith     SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx");
114947b4a8eaSLois Curfman McInnes   }
1150e1311b90SBarry Smith   ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr);
1151899cda47SBarry Smith   if (nt != A->rmap.n) {
115229bbc08cSBarry Smith     SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible parition of A and yy");
115347b4a8eaSLois Curfman McInnes   }
1154ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1155f830108cSBarry Smith   ierr = (*a->A->ops->mult)(a->A,xx,yy);CHKERRQ(ierr);
1156ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1157f830108cSBarry Smith   ierr = (*a->B->ops->multadd)(a->B,a->lvec,yy,yy);CHKERRQ(ierr);
11583a40ed3dSBarry Smith   PetscFunctionReturn(0);
1159cee3aa6bSSatish Balay }
1160cee3aa6bSSatish Balay 
11614a2ae208SSatish Balay #undef __FUNCT__
11624a2ae208SSatish Balay #define __FUNCT__ "MatMultAdd_MPIBAIJ"
1163dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPIBAIJ(Mat A,Vec xx,Vec yy,Vec zz)
1164cee3aa6bSSatish Balay {
1165cee3aa6bSSatish Balay   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)A->data;
1166dfbe8321SBarry Smith   PetscErrorCode ierr;
1167d64ed03dSBarry Smith 
1168d64ed03dSBarry Smith   PetscFunctionBegin;
1169ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1170f830108cSBarry Smith   ierr = (*a->A->ops->multadd)(a->A,xx,yy,zz);CHKERRQ(ierr);
1171ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1172f830108cSBarry Smith   ierr = (*a->B->ops->multadd)(a->B,a->lvec,zz,zz);CHKERRQ(ierr);
11733a40ed3dSBarry Smith   PetscFunctionReturn(0);
1174cee3aa6bSSatish Balay }
1175cee3aa6bSSatish Balay 
11764a2ae208SSatish Balay #undef __FUNCT__
11774a2ae208SSatish Balay #define __FUNCT__ "MatMultTranspose_MPIBAIJ"
1178dfbe8321SBarry Smith PetscErrorCode MatMultTranspose_MPIBAIJ(Mat A,Vec xx,Vec yy)
1179cee3aa6bSSatish Balay {
1180cee3aa6bSSatish Balay   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)A->data;
1181dfbe8321SBarry Smith   PetscErrorCode ierr;
1182a5ff213dSBarry Smith   PetscTruth     merged;
1183cee3aa6bSSatish Balay 
1184d64ed03dSBarry Smith   PetscFunctionBegin;
1185a5ff213dSBarry Smith   ierr = VecScatterGetMerged(a->Mvctx,&merged);CHKERRQ(ierr);
1186cee3aa6bSSatish Balay   /* do nondiagonal part */
11877c922b88SBarry Smith   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr);
1188a5ff213dSBarry Smith   if (!merged) {
1189cee3aa6bSSatish Balay     /* send it on its way */
1190ca9f406cSSatish Balay     ierr = VecScatterBegin(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
1191cee3aa6bSSatish Balay     /* do local part */
11927c922b88SBarry Smith     ierr = (*a->A->ops->multtranspose)(a->A,xx,yy);CHKERRQ(ierr);
1193cee3aa6bSSatish Balay     /* receive remote parts: note this assumes the values are not actually */
1194a5ff213dSBarry Smith     /* inserted in yy until the next line */
1195ca9f406cSSatish Balay     ierr = VecScatterEnd(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
1196a5ff213dSBarry Smith   } else {
1197a5ff213dSBarry Smith     /* do local part */
1198a5ff213dSBarry Smith     ierr = (*a->A->ops->multtranspose)(a->A,xx,yy);CHKERRQ(ierr);
1199a5ff213dSBarry Smith     /* send it on its way */
1200ca9f406cSSatish Balay     ierr = VecScatterBegin(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
1201a5ff213dSBarry Smith     /* values actually were received in the Begin() but we need to call this nop */
1202ca9f406cSSatish Balay     ierr = VecScatterEnd(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
1203a5ff213dSBarry Smith   }
12043a40ed3dSBarry Smith   PetscFunctionReturn(0);
1205cee3aa6bSSatish Balay }
1206cee3aa6bSSatish Balay 
12074a2ae208SSatish Balay #undef __FUNCT__
12084a2ae208SSatish Balay #define __FUNCT__ "MatMultTransposeAdd_MPIBAIJ"
1209dfbe8321SBarry Smith PetscErrorCode MatMultTransposeAdd_MPIBAIJ(Mat A,Vec xx,Vec yy,Vec zz)
1210cee3aa6bSSatish Balay {
1211cee3aa6bSSatish Balay   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)A->data;
1212dfbe8321SBarry Smith   PetscErrorCode ierr;
1213cee3aa6bSSatish Balay 
1214d64ed03dSBarry Smith   PetscFunctionBegin;
1215cee3aa6bSSatish Balay   /* do nondiagonal part */
12167c922b88SBarry Smith   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr);
1217cee3aa6bSSatish Balay   /* send it on its way */
1218ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
1219cee3aa6bSSatish Balay   /* do local part */
12207c922b88SBarry Smith   ierr = (*a->A->ops->multtransposeadd)(a->A,xx,yy,zz);CHKERRQ(ierr);
1221cee3aa6bSSatish Balay   /* receive remote parts: note this assumes the values are not actually */
1222cee3aa6bSSatish Balay   /* inserted in yy until the next line, which is true for my implementation*/
1223cee3aa6bSSatish Balay   /* but is not perhaps always true. */
1224ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
12253a40ed3dSBarry Smith   PetscFunctionReturn(0);
1226cee3aa6bSSatish Balay }
1227cee3aa6bSSatish Balay 
1228cee3aa6bSSatish Balay /*
1229cee3aa6bSSatish Balay   This only works correctly for square matrices where the subblock A->A is the
1230cee3aa6bSSatish Balay    diagonal block
1231cee3aa6bSSatish Balay */
12324a2ae208SSatish Balay #undef __FUNCT__
12334a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonal_MPIBAIJ"
1234dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_MPIBAIJ(Mat A,Vec v)
1235cee3aa6bSSatish Balay {
1236cee3aa6bSSatish Balay   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)A->data;
1237dfbe8321SBarry Smith   PetscErrorCode ierr;
1238d64ed03dSBarry Smith 
1239d64ed03dSBarry Smith   PetscFunctionBegin;
1240899cda47SBarry Smith   if (A->rmap.N != A->cmap.N) SETERRQ(PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block");
12413a40ed3dSBarry Smith   ierr = MatGetDiagonal(a->A,v);CHKERRQ(ierr);
12423a40ed3dSBarry Smith   PetscFunctionReturn(0);
1243cee3aa6bSSatish Balay }
1244cee3aa6bSSatish Balay 
12454a2ae208SSatish Balay #undef __FUNCT__
12464a2ae208SSatish Balay #define __FUNCT__ "MatScale_MPIBAIJ"
1247f4df32b1SMatthew Knepley PetscErrorCode MatScale_MPIBAIJ(Mat A,PetscScalar aa)
1248cee3aa6bSSatish Balay {
1249cee3aa6bSSatish Balay   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)A->data;
1250dfbe8321SBarry Smith   PetscErrorCode ierr;
1251d64ed03dSBarry Smith 
1252d64ed03dSBarry Smith   PetscFunctionBegin;
1253f4df32b1SMatthew Knepley   ierr = MatScale(a->A,aa);CHKERRQ(ierr);
1254f4df32b1SMatthew Knepley   ierr = MatScale(a->B,aa);CHKERRQ(ierr);
12553a40ed3dSBarry Smith   PetscFunctionReturn(0);
1256cee3aa6bSSatish Balay }
1257026e39d0SSatish Balay 
12584a2ae208SSatish Balay #undef __FUNCT__
12594a2ae208SSatish Balay #define __FUNCT__ "MatGetRow_MPIBAIJ"
1260b24ad042SBarry Smith PetscErrorCode MatGetRow_MPIBAIJ(Mat matin,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v)
1261acdf5bf4SSatish Balay {
1262acdf5bf4SSatish Balay   Mat_MPIBAIJ    *mat = (Mat_MPIBAIJ*)matin->data;
126387828ca2SBarry Smith   PetscScalar    *vworkA,*vworkB,**pvA,**pvB,*v_p;
12646849ba73SBarry Smith   PetscErrorCode ierr;
1265899cda47SBarry Smith   PetscInt       bs = matin->rmap.bs,bs2 = mat->bs2,i,*cworkA,*cworkB,**pcA,**pcB;
1266899cda47SBarry Smith   PetscInt       nztot,nzA,nzB,lrow,brstart = matin->rmap.rstart,brend = matin->rmap.rend;
1267899cda47SBarry Smith   PetscInt       *cmap,*idx_p,cstart = mat->cstartbs;
1268acdf5bf4SSatish Balay 
1269d64ed03dSBarry Smith   PetscFunctionBegin;
1270abc0a331SBarry Smith   if (mat->getrowactive) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Already active");
1271acdf5bf4SSatish Balay   mat->getrowactive = PETSC_TRUE;
1272acdf5bf4SSatish Balay 
1273acdf5bf4SSatish Balay   if (!mat->rowvalues && (idx || v)) {
1274acdf5bf4SSatish Balay     /*
1275acdf5bf4SSatish Balay         allocate enough space to hold information from the longest row.
1276acdf5bf4SSatish Balay     */
1277acdf5bf4SSatish Balay     Mat_SeqBAIJ *Aa = (Mat_SeqBAIJ*)mat->A->data,*Ba = (Mat_SeqBAIJ*)mat->B->data;
1278b24ad042SBarry Smith     PetscInt     max = 1,mbs = mat->mbs,tmp;
1279bd16c2feSSatish Balay     for (i=0; i<mbs; i++) {
1280acdf5bf4SSatish Balay       tmp = Aa->i[i+1] - Aa->i[i] + Ba->i[i+1] - Ba->i[i];
1281acdf5bf4SSatish Balay       if (max < tmp) { max = tmp; }
1282acdf5bf4SSatish Balay     }
1283b24ad042SBarry Smith     ierr = PetscMalloc(max*bs2*(sizeof(PetscInt)+sizeof(PetscScalar)),&mat->rowvalues);CHKERRQ(ierr);
1284b24ad042SBarry Smith     mat->rowindices = (PetscInt*)(mat->rowvalues + max*bs2);
1285acdf5bf4SSatish Balay   }
1286acdf5bf4SSatish Balay 
128729bbc08cSBarry Smith   if (row < brstart || row >= brend) SETERRQ(PETSC_ERR_SUP,"Only local rows")
1288d9d09a02SSatish Balay   lrow = row - brstart;
1289acdf5bf4SSatish Balay 
1290acdf5bf4SSatish Balay   pvA = &vworkA; pcA = &cworkA; pvB = &vworkB; pcB = &cworkB;
1291acdf5bf4SSatish Balay   if (!v)   {pvA = 0; pvB = 0;}
1292acdf5bf4SSatish Balay   if (!idx) {pcA = 0; if (!v) pcB = 0;}
1293f830108cSBarry Smith   ierr = (*mat->A->ops->getrow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr);
1294f830108cSBarry Smith   ierr = (*mat->B->ops->getrow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr);
1295acdf5bf4SSatish Balay   nztot = nzA + nzB;
1296acdf5bf4SSatish Balay 
1297acdf5bf4SSatish Balay   cmap  = mat->garray;
1298acdf5bf4SSatish Balay   if (v  || idx) {
1299acdf5bf4SSatish Balay     if (nztot) {
1300acdf5bf4SSatish Balay       /* Sort by increasing column numbers, assuming A and B already sorted */
1301b24ad042SBarry Smith       PetscInt imark = -1;
1302acdf5bf4SSatish Balay       if (v) {
1303acdf5bf4SSatish Balay         *v = v_p = mat->rowvalues;
1304acdf5bf4SSatish Balay         for (i=0; i<nzB; i++) {
1305d9d09a02SSatish Balay           if (cmap[cworkB[i]/bs] < cstart)   v_p[i] = vworkB[i];
1306acdf5bf4SSatish Balay           else break;
1307acdf5bf4SSatish Balay         }
1308acdf5bf4SSatish Balay         imark = i;
1309acdf5bf4SSatish Balay         for (i=0; i<nzA; i++)     v_p[imark+i] = vworkA[i];
1310acdf5bf4SSatish Balay         for (i=imark; i<nzB; i++) v_p[nzA+i]   = vworkB[i];
1311acdf5bf4SSatish Balay       }
1312acdf5bf4SSatish Balay       if (idx) {
1313acdf5bf4SSatish Balay         *idx = idx_p = mat->rowindices;
1314acdf5bf4SSatish Balay         if (imark > -1) {
1315acdf5bf4SSatish Balay           for (i=0; i<imark; i++) {
1316bd16c2feSSatish Balay             idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs;
1317acdf5bf4SSatish Balay           }
1318acdf5bf4SSatish Balay         } else {
1319acdf5bf4SSatish Balay           for (i=0; i<nzB; i++) {
1320d9d09a02SSatish Balay             if (cmap[cworkB[i]/bs] < cstart)
1321d9d09a02SSatish Balay               idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ;
1322acdf5bf4SSatish Balay             else break;
1323acdf5bf4SSatish Balay           }
1324acdf5bf4SSatish Balay           imark = i;
1325acdf5bf4SSatish Balay         }
1326d9d09a02SSatish Balay         for (i=0; i<nzA; i++)     idx_p[imark+i] = cstart*bs + cworkA[i];
1327d9d09a02SSatish Balay         for (i=imark; i<nzB; i++) idx_p[nzA+i]   = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ;
1328acdf5bf4SSatish Balay       }
1329d64ed03dSBarry Smith     } else {
1330d212a18eSSatish Balay       if (idx) *idx = 0;
1331d212a18eSSatish Balay       if (v)   *v   = 0;
1332d212a18eSSatish Balay     }
1333acdf5bf4SSatish Balay   }
1334acdf5bf4SSatish Balay   *nz = nztot;
1335f830108cSBarry Smith   ierr = (*mat->A->ops->restorerow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr);
1336f830108cSBarry Smith   ierr = (*mat->B->ops->restorerow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr);
13373a40ed3dSBarry Smith   PetscFunctionReturn(0);
1338acdf5bf4SSatish Balay }
1339acdf5bf4SSatish Balay 
13404a2ae208SSatish Balay #undef __FUNCT__
13414a2ae208SSatish Balay #define __FUNCT__ "MatRestoreRow_MPIBAIJ"
1342b24ad042SBarry Smith PetscErrorCode MatRestoreRow_MPIBAIJ(Mat mat,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v)
1343acdf5bf4SSatish Balay {
1344acdf5bf4SSatish Balay   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data;
1345d64ed03dSBarry Smith 
1346d64ed03dSBarry Smith   PetscFunctionBegin;
1347abc0a331SBarry Smith   if (!baij->getrowactive) {
134829bbc08cSBarry Smith     SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"MatGetRow not called");
1349acdf5bf4SSatish Balay   }
1350acdf5bf4SSatish Balay   baij->getrowactive = PETSC_FALSE;
13513a40ed3dSBarry Smith   PetscFunctionReturn(0);
1352acdf5bf4SSatish Balay }
1353acdf5bf4SSatish Balay 
13544a2ae208SSatish Balay #undef __FUNCT__
13554a2ae208SSatish Balay #define __FUNCT__ "MatZeroEntries_MPIBAIJ"
1356dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_MPIBAIJ(Mat A)
135758667388SSatish Balay {
135858667388SSatish Balay   Mat_MPIBAIJ    *l = (Mat_MPIBAIJ*)A->data;
1359dfbe8321SBarry Smith   PetscErrorCode ierr;
1360d64ed03dSBarry Smith 
1361d64ed03dSBarry Smith   PetscFunctionBegin;
136258667388SSatish Balay   ierr = MatZeroEntries(l->A);CHKERRQ(ierr);
136358667388SSatish Balay   ierr = MatZeroEntries(l->B);CHKERRQ(ierr);
13643a40ed3dSBarry Smith   PetscFunctionReturn(0);
136558667388SSatish Balay }
13660ac07820SSatish Balay 
13674a2ae208SSatish Balay #undef __FUNCT__
13684a2ae208SSatish Balay #define __FUNCT__ "MatGetInfo_MPIBAIJ"
1369dfbe8321SBarry Smith PetscErrorCode MatGetInfo_MPIBAIJ(Mat matin,MatInfoType flag,MatInfo *info)
13700ac07820SSatish Balay {
13714e220ebcSLois Curfman McInnes   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)matin->data;
13724e220ebcSLois Curfman McInnes   Mat            A = a->A,B = a->B;
1373dfbe8321SBarry Smith   PetscErrorCode ierr;
1374329f5518SBarry Smith   PetscReal      isend[5],irecv[5];
13750ac07820SSatish Balay 
1376d64ed03dSBarry Smith   PetscFunctionBegin;
1377899cda47SBarry Smith   info->block_size     = (PetscReal)matin->rmap.bs;
13784e220ebcSLois Curfman McInnes   ierr = MatGetInfo(A,MAT_LOCAL,info);CHKERRQ(ierr);
13790e4b21beSBarry Smith   isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded;
1380de87f314SBarry Smith   isend[3] = info->memory;  isend[4] = info->mallocs;
13814e220ebcSLois Curfman McInnes   ierr = MatGetInfo(B,MAT_LOCAL,info);CHKERRQ(ierr);
13820e4b21beSBarry Smith   isend[0] += info->nz_used; isend[1] += info->nz_allocated; isend[2] += info->nz_unneeded;
1383de87f314SBarry Smith   isend[3] += info->memory;  isend[4] += info->mallocs;
13840ac07820SSatish Balay   if (flag == MAT_LOCAL) {
13854e220ebcSLois Curfman McInnes     info->nz_used      = isend[0];
13864e220ebcSLois Curfman McInnes     info->nz_allocated = isend[1];
13874e220ebcSLois Curfman McInnes     info->nz_unneeded  = isend[2];
13884e220ebcSLois Curfman McInnes     info->memory       = isend[3];
13894e220ebcSLois Curfman McInnes     info->mallocs      = isend[4];
13900ac07820SSatish Balay   } else if (flag == MAT_GLOBAL_MAX) {
13917adad957SLisandro Dalcin     ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_MAX,((PetscObject)matin)->comm);CHKERRQ(ierr);
13924e220ebcSLois Curfman McInnes     info->nz_used      = irecv[0];
13934e220ebcSLois Curfman McInnes     info->nz_allocated = irecv[1];
13944e220ebcSLois Curfman McInnes     info->nz_unneeded  = irecv[2];
13954e220ebcSLois Curfman McInnes     info->memory       = irecv[3];
13964e220ebcSLois Curfman McInnes     info->mallocs      = irecv[4];
13970ac07820SSatish Balay   } else if (flag == MAT_GLOBAL_SUM) {
13987adad957SLisandro Dalcin     ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_SUM,((PetscObject)matin)->comm);CHKERRQ(ierr);
13994e220ebcSLois Curfman McInnes     info->nz_used      = irecv[0];
14004e220ebcSLois Curfman McInnes     info->nz_allocated = irecv[1];
14014e220ebcSLois Curfman McInnes     info->nz_unneeded  = irecv[2];
14024e220ebcSLois Curfman McInnes     info->memory       = irecv[3];
14034e220ebcSLois Curfman McInnes     info->mallocs      = irecv[4];
1404d41123aaSBarry Smith   } else {
140577431f27SBarry Smith     SETERRQ1(PETSC_ERR_ARG_WRONG,"Unknown MatInfoType argument %d",(int)flag);
14060ac07820SSatish Balay   }
1407899cda47SBarry Smith   info->rows_global       = (PetscReal)A->rmap.N;
1408899cda47SBarry Smith   info->columns_global    = (PetscReal)A->cmap.N;
1409899cda47SBarry Smith   info->rows_local        = (PetscReal)A->rmap.N;
1410899cda47SBarry Smith   info->columns_local     = (PetscReal)A->cmap.N;
14114e220ebcSLois Curfman McInnes   info->fill_ratio_given  = 0; /* no parallel LU/ILU/Cholesky */
14124e220ebcSLois Curfman McInnes   info->fill_ratio_needed = 0;
14134e220ebcSLois Curfman McInnes   info->factor_mallocs    = 0;
14143a40ed3dSBarry Smith   PetscFunctionReturn(0);
14150ac07820SSatish Balay }
14160ac07820SSatish Balay 
14174a2ae208SSatish Balay #undef __FUNCT__
14184a2ae208SSatish Balay #define __FUNCT__ "MatSetOption_MPIBAIJ"
14194e0d8c25SBarry Smith PetscErrorCode MatSetOption_MPIBAIJ(Mat A,MatOption op,PetscTruth flg)
142058667388SSatish Balay {
142158667388SSatish Balay   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)A->data;
1422dfbe8321SBarry Smith   PetscErrorCode ierr;
142358667388SSatish Balay 
1424d64ed03dSBarry Smith   PetscFunctionBegin;
142512c028f9SKris Buschelman   switch (op) {
1426512a5fc5SBarry Smith   case MAT_NEW_NONZERO_LOCATIONS:
142712c028f9SKris Buschelman   case MAT_NEW_NONZERO_ALLOCATION_ERR:
142812c028f9SKris Buschelman   case MAT_KEEP_ZEROED_ROWS:
142912c028f9SKris Buschelman   case MAT_NEW_NONZERO_LOCATION_ERR:
14304e0d8c25SBarry Smith     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
14314e0d8c25SBarry Smith     ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr);
143212c028f9SKris Buschelman     break;
143312c028f9SKris Buschelman   case MAT_ROW_ORIENTED:
14344e0d8c25SBarry Smith     a->roworiented = flg;
14354e0d8c25SBarry Smith     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
14364e0d8c25SBarry Smith     ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr);
143712c028f9SKris Buschelman     break;
14384e0d8c25SBarry Smith   case MAT_NEW_DIAGONALS:
1439290bbb0aSBarry Smith     ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr);
144012c028f9SKris Buschelman     break;
144112c028f9SKris Buschelman   case MAT_IGNORE_OFF_PROC_ENTRIES:
14424e0d8c25SBarry Smith     a->donotstash = flg;
144312c028f9SKris Buschelman     break;
144412c028f9SKris Buschelman   case MAT_USE_HASH_TABLE:
14454e0d8c25SBarry Smith     a->ht_flag = flg;
144612c028f9SKris Buschelman     break;
144777e54ba9SKris Buschelman   case MAT_SYMMETRIC:
144877e54ba9SKris Buschelman   case MAT_STRUCTURALLY_SYMMETRIC:
14492188ac68SBarry Smith   case MAT_HERMITIAN:
14502188ac68SBarry Smith   case MAT_SYMMETRY_ETERNAL:
14514e0d8c25SBarry Smith     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
145277e54ba9SKris Buschelman     break;
145312c028f9SKris Buschelman   default:
1454ad86a440SBarry Smith     SETERRQ1(PETSC_ERR_SUP,"unknown option %d",op);
1455d64ed03dSBarry Smith   }
14563a40ed3dSBarry Smith   PetscFunctionReturn(0);
145758667388SSatish Balay }
145858667388SSatish Balay 
14594a2ae208SSatish Balay #undef __FUNCT__
14604a2ae208SSatish Balay #define __FUNCT__ "MatTranspose_MPIBAIJ("
1461dfbe8321SBarry Smith PetscErrorCode MatTranspose_MPIBAIJ(Mat A,Mat *matout)
14620ac07820SSatish Balay {
14630ac07820SSatish Balay   Mat_MPIBAIJ    *baij = (Mat_MPIBAIJ*)A->data;
14640ac07820SSatish Balay   Mat_SeqBAIJ    *Aloc;
14650ac07820SSatish Balay   Mat            B;
1466dfbe8321SBarry Smith   PetscErrorCode ierr;
1467899cda47SBarry Smith   PetscInt       M=A->rmap.N,N=A->cmap.N,*ai,*aj,i,*rvals,j,k,col;
1468899cda47SBarry Smith   PetscInt       bs=A->rmap.bs,mbs=baij->mbs;
14693eda8832SBarry Smith   MatScalar      *a;
14700ac07820SSatish Balay 
1471d64ed03dSBarry Smith   PetscFunctionBegin;
147229bbc08cSBarry Smith   if (!matout && M != N) SETERRQ(PETSC_ERR_ARG_SIZ,"Square matrix only for in-place");
14737adad957SLisandro Dalcin   ierr = MatCreate(((PetscObject)A)->comm,&B);CHKERRQ(ierr);
1474899cda47SBarry Smith   ierr = MatSetSizes(B,A->cmap.n,A->rmap.n,N,M);CHKERRQ(ierr);
14757adad957SLisandro Dalcin   ierr = MatSetType(B,((PetscObject)A)->type_name);CHKERRQ(ierr);
1476899cda47SBarry Smith   ierr = MatMPIBAIJSetPreallocation(B,A->rmap.bs,0,PETSC_NULL,0,PETSC_NULL);CHKERRQ(ierr);
14770ac07820SSatish Balay 
14780ac07820SSatish Balay   /* copy over the A part */
14790ac07820SSatish Balay   Aloc = (Mat_SeqBAIJ*)baij->A->data;
14800ac07820SSatish Balay   ai   = Aloc->i; aj = Aloc->j; a = Aloc->a;
1481b24ad042SBarry Smith   ierr = PetscMalloc(bs*sizeof(PetscInt),&rvals);CHKERRQ(ierr);
14820ac07820SSatish Balay 
14830ac07820SSatish Balay   for (i=0; i<mbs; i++) {
1484899cda47SBarry Smith     rvals[0] = bs*(baij->rstartbs + i);
14850ac07820SSatish Balay     for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; }
14860ac07820SSatish Balay     for (j=ai[i]; j<ai[i+1]; j++) {
1487899cda47SBarry Smith       col = (baij->cstartbs+aj[j])*bs;
14880ac07820SSatish Balay       for (k=0; k<bs; k++) {
1489*97e5c40aSBarry Smith         ierr = MatSetValues_MPIBAIJ(B,1,&col,bs,rvals,a,INSERT_VALUES);CHKERRQ(ierr);
14900ac07820SSatish Balay         col++; a += bs;
14910ac07820SSatish Balay       }
14920ac07820SSatish Balay     }
14930ac07820SSatish Balay   }
14940ac07820SSatish Balay   /* copy over the B part */
14950ac07820SSatish Balay   Aloc = (Mat_SeqBAIJ*)baij->B->data;
14960ac07820SSatish Balay   ai = Aloc->i; aj = Aloc->j; a = Aloc->a;
14970ac07820SSatish Balay   for (i=0; i<mbs; i++) {
1498899cda47SBarry Smith     rvals[0] = bs*(baij->rstartbs + i);
14990ac07820SSatish Balay     for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; }
15000ac07820SSatish Balay     for (j=ai[i]; j<ai[i+1]; j++) {
15010ac07820SSatish Balay       col = baij->garray[aj[j]]*bs;
15020ac07820SSatish Balay       for (k=0; k<bs; k++) {
1503*97e5c40aSBarry Smith         ierr = MatSetValues_MPIBAIJ(B,1,&col,bs,rvals,a,INSERT_VALUES);CHKERRQ(ierr);
15040ac07820SSatish Balay         col++; a += bs;
15050ac07820SSatish Balay       }
15060ac07820SSatish Balay     }
15070ac07820SSatish Balay   }
1508606d414cSSatish Balay   ierr = PetscFree(rvals);CHKERRQ(ierr);
15090ac07820SSatish Balay   ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
15100ac07820SSatish Balay   ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
15110ac07820SSatish Balay 
15127c922b88SBarry Smith   if (matout) {
15130ac07820SSatish Balay     *matout = B;
15140ac07820SSatish Balay   } else {
1515273d9f13SBarry Smith     ierr = MatHeaderCopy(A,B);CHKERRQ(ierr);
15160ac07820SSatish Balay   }
15173a40ed3dSBarry Smith   PetscFunctionReturn(0);
15180ac07820SSatish Balay }
15190e95ebc0SSatish Balay 
15204a2ae208SSatish Balay #undef __FUNCT__
15214a2ae208SSatish Balay #define __FUNCT__ "MatDiagonalScale_MPIBAIJ"
1522dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_MPIBAIJ(Mat mat,Vec ll,Vec rr)
15230e95ebc0SSatish Balay {
152436c4a09eSSatish Balay   Mat_MPIBAIJ    *baij = (Mat_MPIBAIJ*)mat->data;
152536c4a09eSSatish Balay   Mat            a = baij->A,b = baij->B;
1526dfbe8321SBarry Smith   PetscErrorCode ierr;
1527b24ad042SBarry Smith   PetscInt       s1,s2,s3;
15280e95ebc0SSatish Balay 
1529d64ed03dSBarry Smith   PetscFunctionBegin;
153036c4a09eSSatish Balay   ierr = MatGetLocalSize(mat,&s2,&s3);CHKERRQ(ierr);
153136c4a09eSSatish Balay   if (rr) {
153236c4a09eSSatish Balay     ierr = VecGetLocalSize(rr,&s1);CHKERRQ(ierr);
153329bbc08cSBarry Smith     if (s1!=s3) SETERRQ(PETSC_ERR_ARG_SIZ,"right vector non-conforming local size");
153436c4a09eSSatish Balay     /* Overlap communication with computation. */
1535ca9f406cSSatish Balay     ierr = VecScatterBegin(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
153636c4a09eSSatish Balay   }
15370e95ebc0SSatish Balay   if (ll) {
15380e95ebc0SSatish Balay     ierr = VecGetLocalSize(ll,&s1);CHKERRQ(ierr);
153929bbc08cSBarry Smith     if (s1!=s2) SETERRQ(PETSC_ERR_ARG_SIZ,"left vector non-conforming local size");
1540a21fb8cbSBarry Smith     ierr = (*b->ops->diagonalscale)(b,ll,PETSC_NULL);CHKERRQ(ierr);
15410e95ebc0SSatish Balay   }
154236c4a09eSSatish Balay   /* scale  the diagonal block */
154336c4a09eSSatish Balay   ierr = (*a->ops->diagonalscale)(a,ll,rr);CHKERRQ(ierr);
154436c4a09eSSatish Balay 
154536c4a09eSSatish Balay   if (rr) {
154636c4a09eSSatish Balay     /* Do a scatter end and then right scale the off-diagonal block */
1547ca9f406cSSatish Balay     ierr = VecScatterEnd(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1548a21fb8cbSBarry Smith     ierr = (*b->ops->diagonalscale)(b,PETSC_NULL,baij->lvec);CHKERRQ(ierr);
154936c4a09eSSatish Balay   }
155036c4a09eSSatish Balay 
15513a40ed3dSBarry Smith   PetscFunctionReturn(0);
15520e95ebc0SSatish Balay }
15530e95ebc0SSatish Balay 
15544a2ae208SSatish Balay #undef __FUNCT__
15554a2ae208SSatish Balay #define __FUNCT__ "MatZeroRows_MPIBAIJ"
1556f4df32b1SMatthew Knepley PetscErrorCode MatZeroRows_MPIBAIJ(Mat A,PetscInt N,const PetscInt rows[],PetscScalar diag)
15570ac07820SSatish Balay {
15580ac07820SSatish Balay   Mat_MPIBAIJ    *l = (Mat_MPIBAIJ*)A->data;
15596849ba73SBarry Smith   PetscErrorCode ierr;
1560b24ad042SBarry Smith   PetscMPIInt    imdex,size = l->size,n,rank = l->rank;
1561899cda47SBarry Smith   PetscInt       i,*owners = A->rmap.range;
1562b24ad042SBarry Smith   PetscInt       *nprocs,j,idx,nsends,row;
1563b24ad042SBarry Smith   PetscInt       nmax,*svalues,*starts,*owner,nrecvs;
15647adad957SLisandro Dalcin   PetscInt       *rvalues,tag = ((PetscObject)A)->tag,count,base,slen,*source,lastidx = -1;
1565357c27ecSBarry Smith   PetscInt       *lens,*lrows,*values,rstart_bs=A->rmap.rstart;
15667adad957SLisandro Dalcin   MPI_Comm       comm = ((PetscObject)A)->comm;
15670ac07820SSatish Balay   MPI_Request    *send_waits,*recv_waits;
15680ac07820SSatish Balay   MPI_Status     recv_status,*send_status;
15696543fbbaSBarry Smith #if defined(PETSC_DEBUG)
15706543fbbaSBarry Smith   PetscTruth     found = PETSC_FALSE;
15716543fbbaSBarry Smith #endif
15720ac07820SSatish Balay 
1573d64ed03dSBarry Smith   PetscFunctionBegin;
15740ac07820SSatish Balay   /*  first count number of contributors to each processor */
1575b24ad042SBarry Smith   ierr  = PetscMalloc(2*size*sizeof(PetscInt),&nprocs);CHKERRQ(ierr);
1576b24ad042SBarry Smith   ierr  = PetscMemzero(nprocs,2*size*sizeof(PetscInt));CHKERRQ(ierr);
1577b24ad042SBarry Smith   ierr  = PetscMalloc((N+1)*sizeof(PetscInt),&owner);CHKERRQ(ierr); /* see note*/
15786543fbbaSBarry Smith   j = 0;
15790ac07820SSatish Balay   for (i=0; i<N; i++) {
15806543fbbaSBarry Smith     if (lastidx > (idx = rows[i])) j = 0;
15816543fbbaSBarry Smith     lastidx = idx;
15826543fbbaSBarry Smith     for (; j<size; j++) {
1583357c27ecSBarry Smith       if (idx >= owners[j] && idx < owners[j+1]) {
15846543fbbaSBarry Smith         nprocs[2*j]++;
15856543fbbaSBarry Smith         nprocs[2*j+1] = 1;
15866543fbbaSBarry Smith         owner[i] = j;
15876543fbbaSBarry Smith #if defined(PETSC_DEBUG)
15886543fbbaSBarry Smith         found = PETSC_TRUE;
15896543fbbaSBarry Smith #endif
15906543fbbaSBarry Smith         break;
15910ac07820SSatish Balay       }
15920ac07820SSatish Balay     }
15936543fbbaSBarry Smith #if defined(PETSC_DEBUG)
159429bbc08cSBarry Smith     if (!found) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Index out of range");
15956543fbbaSBarry Smith     found = PETSC_FALSE;
15966543fbbaSBarry Smith #endif
15970ac07820SSatish Balay   }
1598c1dc657dSBarry Smith   nsends = 0;  for (i=0; i<size; i++) { nsends += nprocs[2*i+1];}
15990ac07820SSatish Balay 
16000ac07820SSatish Balay   /* inform other processors of number of messages and max length*/
1601c1dc657dSBarry Smith   ierr = PetscMaxSum(comm,nprocs,&nmax,&nrecvs);CHKERRQ(ierr);
16020ac07820SSatish Balay 
16030ac07820SSatish Balay   /* post receives:   */
1604b24ad042SBarry Smith   ierr = PetscMalloc((nrecvs+1)*(nmax+1)*sizeof(PetscInt),&rvalues);CHKERRQ(ierr);
1605b0a32e0cSBarry Smith   ierr = PetscMalloc((nrecvs+1)*sizeof(MPI_Request),&recv_waits);CHKERRQ(ierr);
16060ac07820SSatish Balay   for (i=0; i<nrecvs; i++) {
1607b24ad042SBarry Smith     ierr = MPI_Irecv(rvalues+nmax*i,nmax,MPIU_INT,MPI_ANY_SOURCE,tag,comm,recv_waits+i);CHKERRQ(ierr);
16080ac07820SSatish Balay   }
16090ac07820SSatish Balay 
16100ac07820SSatish Balay   /* do sends:
16110ac07820SSatish Balay      1) starts[i] gives the starting index in svalues for stuff going to
16120ac07820SSatish Balay      the ith processor
16130ac07820SSatish Balay   */
1614b24ad042SBarry Smith   ierr = PetscMalloc((N+1)*sizeof(PetscInt),&svalues);CHKERRQ(ierr);
1615b0a32e0cSBarry Smith   ierr = PetscMalloc((nsends+1)*sizeof(MPI_Request),&send_waits);CHKERRQ(ierr);
1616b24ad042SBarry Smith   ierr = PetscMalloc((size+1)*sizeof(PetscInt),&starts);CHKERRQ(ierr);
16170ac07820SSatish Balay   starts[0]  = 0;
1618c1dc657dSBarry Smith   for (i=1; i<size; i++) { starts[i] = starts[i-1] + nprocs[2*i-2];}
16190ac07820SSatish Balay   for (i=0; i<N; i++) {
16200ac07820SSatish Balay     svalues[starts[owner[i]]++] = rows[i];
16210ac07820SSatish Balay   }
16220ac07820SSatish Balay 
16230ac07820SSatish Balay   starts[0] = 0;
1624c1dc657dSBarry Smith   for (i=1; i<size+1; i++) { starts[i] = starts[i-1] + nprocs[2*i-2];}
16250ac07820SSatish Balay   count = 0;
16260ac07820SSatish Balay   for (i=0; i<size; i++) {
1627c1dc657dSBarry Smith     if (nprocs[2*i+1]) {
1628b24ad042SBarry Smith       ierr = MPI_Isend(svalues+starts[i],nprocs[2*i],MPIU_INT,i,tag,comm,send_waits+count++);CHKERRQ(ierr);
16290ac07820SSatish Balay     }
16300ac07820SSatish Balay   }
1631606d414cSSatish Balay   ierr = PetscFree(starts);CHKERRQ(ierr);
16320ac07820SSatish Balay 
1633357c27ecSBarry Smith   base = owners[rank];
16340ac07820SSatish Balay 
16350ac07820SSatish Balay   /*  wait on receives */
1636b24ad042SBarry Smith   ierr   = PetscMalloc(2*(nrecvs+1)*sizeof(PetscInt),&lens);CHKERRQ(ierr);
16370ac07820SSatish Balay   source = lens + nrecvs;
16380ac07820SSatish Balay   count  = nrecvs; slen = 0;
16390ac07820SSatish Balay   while (count) {
1640ca161407SBarry Smith     ierr = MPI_Waitany(nrecvs,recv_waits,&imdex,&recv_status);CHKERRQ(ierr);
16410ac07820SSatish Balay     /* unpack receives into our local space */
1642b24ad042SBarry Smith     ierr = MPI_Get_count(&recv_status,MPIU_INT,&n);CHKERRQ(ierr);
16430ac07820SSatish Balay     source[imdex]  = recv_status.MPI_SOURCE;
16440ac07820SSatish Balay     lens[imdex]    = n;
16450ac07820SSatish Balay     slen          += n;
16460ac07820SSatish Balay     count--;
16470ac07820SSatish Balay   }
1648606d414cSSatish Balay   ierr = PetscFree(recv_waits);CHKERRQ(ierr);
16490ac07820SSatish Balay 
16500ac07820SSatish Balay   /* move the data into the send scatter */
1651b24ad042SBarry Smith   ierr = PetscMalloc((slen+1)*sizeof(PetscInt),&lrows);CHKERRQ(ierr);
16520ac07820SSatish Balay   count = 0;
16530ac07820SSatish Balay   for (i=0; i<nrecvs; i++) {
16540ac07820SSatish Balay     values = rvalues + i*nmax;
16550ac07820SSatish Balay     for (j=0; j<lens[i]; j++) {
16560ac07820SSatish Balay       lrows[count++] = values[j] - base;
16570ac07820SSatish Balay     }
16580ac07820SSatish Balay   }
1659606d414cSSatish Balay   ierr = PetscFree(rvalues);CHKERRQ(ierr);
1660606d414cSSatish Balay   ierr = PetscFree(lens);CHKERRQ(ierr);
1661606d414cSSatish Balay   ierr = PetscFree(owner);CHKERRQ(ierr);
1662606d414cSSatish Balay   ierr = PetscFree(nprocs);CHKERRQ(ierr);
16630ac07820SSatish Balay 
16640ac07820SSatish Balay   /* actually zap the local rows */
166572dacd9aSBarry Smith   /*
166672dacd9aSBarry Smith         Zero the required rows. If the "diagonal block" of the matrix
1667a8c7a070SBarry Smith      is square and the user wishes to set the diagonal we use separate
166872dacd9aSBarry Smith      code so that MatSetValues() is not called for each diagonal allocating
166972dacd9aSBarry Smith      new memory, thus calling lots of mallocs and slowing things down.
167072dacd9aSBarry Smith 
1671f4df32b1SMatthew Knepley        Contributed by: Matthew Knepley
167272dacd9aSBarry Smith   */
16739c957beeSSatish Balay   /* must zero l->B before l->A because the (diag) case below may put values into l->B*/
1674f4df32b1SMatthew Knepley   ierr = MatZeroRows_SeqBAIJ(l->B,slen,lrows,0.0);CHKERRQ(ierr);
1675899cda47SBarry Smith   if ((diag != 0.0) && (l->A->rmap.N == l->A->cmap.N)) {
1676f4df32b1SMatthew Knepley     ierr = MatZeroRows_SeqBAIJ(l->A,slen,lrows,diag);CHKERRQ(ierr);
1677f4df32b1SMatthew Knepley   } else if (diag != 0.0) {
1678f4df32b1SMatthew Knepley     ierr = MatZeroRows_SeqBAIJ(l->A,slen,lrows,0.0);CHKERRQ(ierr);
1679fa46199cSSatish Balay     if (((Mat_SeqBAIJ*)l->A->data)->nonew) {
168029bbc08cSBarry Smith       SETERRQ(PETSC_ERR_SUP,"MatZeroRows() on rectangular matrices cannot be used with the Mat options \n\
1681512a5fc5SBarry Smith MAT_NEW_NONZERO_LOCATIONS,MAT_NEW_NONZERO_LOCATION_ERR,MAT_NEW_NONZERO_ALLOCATION_ERR");
16826525c446SSatish Balay     }
1683a07cd24cSSatish Balay     for (i=0; i<slen; i++) {
1684a07cd24cSSatish Balay       row  = lrows[i] + rstart_bs;
1685f4df32b1SMatthew Knepley       ierr = MatSetValues(A,1,&row,1,&row,&diag,INSERT_VALUES);CHKERRQ(ierr);
1686a07cd24cSSatish Balay     }
1687a07cd24cSSatish Balay     ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
1688a07cd24cSSatish Balay     ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
16899c957beeSSatish Balay   } else {
1690f4df32b1SMatthew Knepley     ierr = MatZeroRows_SeqBAIJ(l->A,slen,lrows,0.0);CHKERRQ(ierr);
1691a07cd24cSSatish Balay   }
16929c957beeSSatish Balay 
1693606d414cSSatish Balay   ierr = PetscFree(lrows);CHKERRQ(ierr);
1694a07cd24cSSatish Balay 
16950ac07820SSatish Balay   /* wait on sends */
16960ac07820SSatish Balay   if (nsends) {
169782502324SSatish Balay     ierr = PetscMalloc(nsends*sizeof(MPI_Status),&send_status);CHKERRQ(ierr);
1698ca161407SBarry Smith     ierr = MPI_Waitall(nsends,send_waits,send_status);CHKERRQ(ierr);
1699606d414cSSatish Balay     ierr = PetscFree(send_status);CHKERRQ(ierr);
17000ac07820SSatish Balay   }
1701606d414cSSatish Balay   ierr = PetscFree(send_waits);CHKERRQ(ierr);
1702606d414cSSatish Balay   ierr = PetscFree(svalues);CHKERRQ(ierr);
17030ac07820SSatish Balay 
17043a40ed3dSBarry Smith   PetscFunctionReturn(0);
17050ac07820SSatish Balay }
170672dacd9aSBarry Smith 
17074a2ae208SSatish Balay #undef __FUNCT__
17084a2ae208SSatish Balay #define __FUNCT__ "MatSetUnfactored_MPIBAIJ"
1709dfbe8321SBarry Smith PetscErrorCode MatSetUnfactored_MPIBAIJ(Mat A)
1710bb5a7306SBarry Smith {
1711bb5a7306SBarry Smith   Mat_MPIBAIJ    *a   = (Mat_MPIBAIJ*)A->data;
1712dfbe8321SBarry Smith   PetscErrorCode ierr;
1713d64ed03dSBarry Smith 
1714d64ed03dSBarry Smith   PetscFunctionBegin;
1715bb5a7306SBarry Smith   ierr = MatSetUnfactored(a->A);CHKERRQ(ierr);
17163a40ed3dSBarry Smith   PetscFunctionReturn(0);
1717bb5a7306SBarry Smith }
1718bb5a7306SBarry Smith 
17196849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIBAIJ(Mat,MatDuplicateOption,Mat *);
17200ac07820SSatish Balay 
17214a2ae208SSatish Balay #undef __FUNCT__
17224a2ae208SSatish Balay #define __FUNCT__ "MatEqual_MPIBAIJ"
1723dfbe8321SBarry Smith PetscErrorCode MatEqual_MPIBAIJ(Mat A,Mat B,PetscTruth *flag)
17247fc3c18eSBarry Smith {
17257fc3c18eSBarry Smith   Mat_MPIBAIJ    *matB = (Mat_MPIBAIJ*)B->data,*matA = (Mat_MPIBAIJ*)A->data;
17267fc3c18eSBarry Smith   Mat            a,b,c,d;
17277fc3c18eSBarry Smith   PetscTruth     flg;
1728dfbe8321SBarry Smith   PetscErrorCode ierr;
17297fc3c18eSBarry Smith 
17307fc3c18eSBarry Smith   PetscFunctionBegin;
17317fc3c18eSBarry Smith   a = matA->A; b = matA->B;
17327fc3c18eSBarry Smith   c = matB->A; d = matB->B;
17337fc3c18eSBarry Smith 
17347fc3c18eSBarry Smith   ierr = MatEqual(a,c,&flg);CHKERRQ(ierr);
1735abc0a331SBarry Smith   if (flg) {
17367fc3c18eSBarry Smith     ierr = MatEqual(b,d,&flg);CHKERRQ(ierr);
17377fc3c18eSBarry Smith   }
17387adad957SLisandro Dalcin   ierr = MPI_Allreduce(&flg,flag,1,MPI_INT,MPI_LAND,((PetscObject)A)->comm);CHKERRQ(ierr);
17397fc3c18eSBarry Smith   PetscFunctionReturn(0);
17407fc3c18eSBarry Smith }
17417fc3c18eSBarry Smith 
17423c896bc6SHong Zhang #undef __FUNCT__
17433c896bc6SHong Zhang #define __FUNCT__ "MatCopy_MPIBAIJ"
17443c896bc6SHong Zhang PetscErrorCode MatCopy_MPIBAIJ(Mat A,Mat B,MatStructure str)
17453c896bc6SHong Zhang {
17463c896bc6SHong Zhang   PetscErrorCode ierr;
17473c896bc6SHong Zhang   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ *)A->data;
17483c896bc6SHong Zhang   Mat_MPIBAIJ    *b = (Mat_MPIBAIJ *)B->data;
17493c896bc6SHong Zhang 
17503c896bc6SHong Zhang   PetscFunctionBegin;
17513c896bc6SHong Zhang   /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */
17523c896bc6SHong Zhang   if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) {
17533c896bc6SHong Zhang     ierr = MatCopy_Basic(A,B,str);CHKERRQ(ierr);
17543c896bc6SHong Zhang   } else {
17553c896bc6SHong Zhang     ierr = MatCopy(a->A,b->A,str);CHKERRQ(ierr);
17563c896bc6SHong Zhang     ierr = MatCopy(a->B,b->B,str);CHKERRQ(ierr);
17573c896bc6SHong Zhang   }
17583c896bc6SHong Zhang   PetscFunctionReturn(0);
17593c896bc6SHong Zhang }
1760273d9f13SBarry Smith 
17614a2ae208SSatish Balay #undef __FUNCT__
17624a2ae208SSatish Balay #define __FUNCT__ "MatSetUpPreallocation_MPIBAIJ"
1763dfbe8321SBarry Smith PetscErrorCode MatSetUpPreallocation_MPIBAIJ(Mat A)
1764273d9f13SBarry Smith {
1765dfbe8321SBarry Smith   PetscErrorCode ierr;
1766273d9f13SBarry Smith 
1767273d9f13SBarry Smith   PetscFunctionBegin;
17687edd0491SSatish Balay   ierr =  MatMPIBAIJSetPreallocation(A,PetscMax(A->rmap.bs,1),PETSC_DEFAULT,0,PETSC_DEFAULT,0);CHKERRQ(ierr);
1769273d9f13SBarry Smith   PetscFunctionReturn(0);
1770273d9f13SBarry Smith }
1771273d9f13SBarry Smith 
17724fe895cdSHong Zhang #include "petscblaslapack.h"
17734fe895cdSHong Zhang #undef __FUNCT__
17744fe895cdSHong Zhang #define __FUNCT__ "MatAXPY_MPIBAIJ"
17754fe895cdSHong Zhang PetscErrorCode MatAXPY_MPIBAIJ(Mat Y,PetscScalar a,Mat X,MatStructure str)
17764fe895cdSHong Zhang {
17774fe895cdSHong Zhang   PetscErrorCode ierr;
17784fe895cdSHong Zhang   Mat_MPIBAIJ    *xx=(Mat_MPIBAIJ *)X->data,*yy=(Mat_MPIBAIJ *)Y->data;
17794fe895cdSHong Zhang   PetscBLASInt   bnz,one=1;
17804fe895cdSHong Zhang   Mat_SeqBAIJ    *x,*y;
17814fe895cdSHong Zhang 
17824fe895cdSHong Zhang   PetscFunctionBegin;
17834fe895cdSHong Zhang   if (str == SAME_NONZERO_PATTERN) {
17844fe895cdSHong Zhang     PetscScalar alpha = a;
17854fe895cdSHong Zhang     x = (Mat_SeqBAIJ *)xx->A->data;
17864fe895cdSHong Zhang     y = (Mat_SeqBAIJ *)yy->A->data;
17870805154bSBarry Smith     bnz = PetscBLASIntCast(x->nz);
17884fe895cdSHong Zhang     BLASaxpy_(&bnz,&alpha,x->a,&one,y->a,&one);
17894fe895cdSHong Zhang     x = (Mat_SeqBAIJ *)xx->B->data;
17904fe895cdSHong Zhang     y = (Mat_SeqBAIJ *)yy->B->data;
17910805154bSBarry Smith     bnz = PetscBLASIntCast(x->nz);
17924fe895cdSHong Zhang     BLASaxpy_(&bnz,&alpha,x->a,&one,y->a,&one);
17934fe895cdSHong Zhang   } else {
17944fe895cdSHong Zhang     ierr = MatAXPY_Basic(Y,a,X,str);CHKERRQ(ierr);
17954fe895cdSHong Zhang   }
17964fe895cdSHong Zhang   PetscFunctionReturn(0);
17974fe895cdSHong Zhang }
17984fe895cdSHong Zhang 
179999cafbc1SBarry Smith #undef __FUNCT__
180099cafbc1SBarry Smith #define __FUNCT__ "MatRealPart_MPIBAIJ"
180199cafbc1SBarry Smith PetscErrorCode MatRealPart_MPIBAIJ(Mat A)
180299cafbc1SBarry Smith {
180399cafbc1SBarry Smith   Mat_MPIBAIJ   *a = (Mat_MPIBAIJ*)A->data;
180499cafbc1SBarry Smith   PetscErrorCode ierr;
180599cafbc1SBarry Smith 
180699cafbc1SBarry Smith   PetscFunctionBegin;
180799cafbc1SBarry Smith   ierr = MatRealPart(a->A);CHKERRQ(ierr);
180899cafbc1SBarry Smith   ierr = MatRealPart(a->B);CHKERRQ(ierr);
180999cafbc1SBarry Smith   PetscFunctionReturn(0);
181099cafbc1SBarry Smith }
181199cafbc1SBarry Smith 
181299cafbc1SBarry Smith #undef __FUNCT__
181399cafbc1SBarry Smith #define __FUNCT__ "MatImaginaryPart_MPIBAIJ"
181499cafbc1SBarry Smith PetscErrorCode MatImaginaryPart_MPIBAIJ(Mat A)
181599cafbc1SBarry Smith {
181699cafbc1SBarry Smith   Mat_MPIBAIJ   *a = (Mat_MPIBAIJ*)A->data;
181799cafbc1SBarry Smith   PetscErrorCode ierr;
181899cafbc1SBarry Smith 
181999cafbc1SBarry Smith   PetscFunctionBegin;
182099cafbc1SBarry Smith   ierr = MatImaginaryPart(a->A);CHKERRQ(ierr);
182199cafbc1SBarry Smith   ierr = MatImaginaryPart(a->B);CHKERRQ(ierr);
182299cafbc1SBarry Smith   PetscFunctionReturn(0);
182399cafbc1SBarry Smith }
182499cafbc1SBarry Smith 
182579bdfe76SSatish Balay /* -------------------------------------------------------------------*/
1826cc2dc46cSBarry Smith static struct _MatOps MatOps_Values = {
1827cc2dc46cSBarry Smith        MatSetValues_MPIBAIJ,
1828cc2dc46cSBarry Smith        MatGetRow_MPIBAIJ,
1829cc2dc46cSBarry Smith        MatRestoreRow_MPIBAIJ,
1830cc2dc46cSBarry Smith        MatMult_MPIBAIJ,
183197304618SKris Buschelman /* 4*/ MatMultAdd_MPIBAIJ,
18327c922b88SBarry Smith        MatMultTranspose_MPIBAIJ,
18337c922b88SBarry Smith        MatMultTransposeAdd_MPIBAIJ,
1834cc2dc46cSBarry Smith        0,
1835cc2dc46cSBarry Smith        0,
1836cc2dc46cSBarry Smith        0,
183797304618SKris Buschelman /*10*/ 0,
1838cc2dc46cSBarry Smith        0,
1839cc2dc46cSBarry Smith        0,
1840cc2dc46cSBarry Smith        0,
1841cc2dc46cSBarry Smith        MatTranspose_MPIBAIJ,
184297304618SKris Buschelman /*15*/ MatGetInfo_MPIBAIJ,
18437fc3c18eSBarry Smith        MatEqual_MPIBAIJ,
1844cc2dc46cSBarry Smith        MatGetDiagonal_MPIBAIJ,
1845cc2dc46cSBarry Smith        MatDiagonalScale_MPIBAIJ,
1846cc2dc46cSBarry Smith        MatNorm_MPIBAIJ,
184797304618SKris Buschelman /*20*/ MatAssemblyBegin_MPIBAIJ,
1848cc2dc46cSBarry Smith        MatAssemblyEnd_MPIBAIJ,
1849cc2dc46cSBarry Smith        0,
1850cc2dc46cSBarry Smith        MatSetOption_MPIBAIJ,
1851cc2dc46cSBarry Smith        MatZeroEntries_MPIBAIJ,
185297304618SKris Buschelman /*25*/ MatZeroRows_MPIBAIJ,
1853cc2dc46cSBarry Smith        0,
1854cc2dc46cSBarry Smith        0,
1855cc2dc46cSBarry Smith        0,
1856cc2dc46cSBarry Smith        0,
185797304618SKris Buschelman /*30*/ MatSetUpPreallocation_MPIBAIJ,
1858273d9f13SBarry Smith        0,
1859cc2dc46cSBarry Smith        0,
1860cc2dc46cSBarry Smith        0,
1861cc2dc46cSBarry Smith        0,
186297304618SKris Buschelman /*35*/ MatDuplicate_MPIBAIJ,
1863cc2dc46cSBarry Smith        0,
1864cc2dc46cSBarry Smith        0,
1865cc2dc46cSBarry Smith        0,
1866cc2dc46cSBarry Smith        0,
18674fe895cdSHong Zhang /*40*/ MatAXPY_MPIBAIJ,
1868cc2dc46cSBarry Smith        MatGetSubMatrices_MPIBAIJ,
1869cc2dc46cSBarry Smith        MatIncreaseOverlap_MPIBAIJ,
1870cc2dc46cSBarry Smith        MatGetValues_MPIBAIJ,
18713c896bc6SHong Zhang        MatCopy_MPIBAIJ,
18728c07d4e3SBarry Smith /*45*/ 0,
1873cc2dc46cSBarry Smith        MatScale_MPIBAIJ,
1874cc2dc46cSBarry Smith        0,
1875cc2dc46cSBarry Smith        0,
1876cc2dc46cSBarry Smith        0,
1877521d7252SBarry Smith /*50*/ 0,
1878cc2dc46cSBarry Smith        0,
1879cc2dc46cSBarry Smith        0,
1880cc2dc46cSBarry Smith        0,
1881cc2dc46cSBarry Smith        0,
188297304618SKris Buschelman /*55*/ 0,
1883cc2dc46cSBarry Smith        0,
1884cc2dc46cSBarry Smith        MatSetUnfactored_MPIBAIJ,
1885cc2dc46cSBarry Smith        0,
1886cc2dc46cSBarry Smith        MatSetValuesBlocked_MPIBAIJ,
188797304618SKris Buschelman /*60*/ 0,
1888f14a1c24SBarry Smith        MatDestroy_MPIBAIJ,
1889f14a1c24SBarry Smith        MatView_MPIBAIJ,
1890357abbc8SBarry Smith        0,
18917843d17aSBarry Smith        0,
189297304618SKris Buschelman /*65*/ 0,
18937843d17aSBarry Smith        0,
18947843d17aSBarry Smith        0,
18957843d17aSBarry Smith        0,
18967843d17aSBarry Smith        0,
1897985db425SBarry Smith /*70*/ MatGetRowMaxAbs_MPIBAIJ,
18987843d17aSBarry Smith        0,
189997304618SKris Buschelman        0,
190097304618SKris Buschelman        0,
190197304618SKris Buschelman        0,
190297304618SKris Buschelman /*75*/ 0,
190397304618SKris Buschelman        0,
190497304618SKris Buschelman        0,
190597304618SKris Buschelman        0,
190697304618SKris Buschelman        0,
190797304618SKris Buschelman /*80*/ 0,
190897304618SKris Buschelman        0,
190997304618SKris Buschelman        0,
191097304618SKris Buschelman        0,
1911865e5f61SKris Buschelman        MatLoad_MPIBAIJ,
1912865e5f61SKris Buschelman /*85*/ 0,
1913865e5f61SKris Buschelman        0,
1914865e5f61SKris Buschelman        0,
1915865e5f61SKris Buschelman        0,
1916865e5f61SKris Buschelman        0,
1917865e5f61SKris Buschelman /*90*/ 0,
1918865e5f61SKris Buschelman        0,
1919865e5f61SKris Buschelman        0,
1920865e5f61SKris Buschelman        0,
1921865e5f61SKris Buschelman        0,
1922865e5f61SKris Buschelman /*95*/ 0,
1923865e5f61SKris Buschelman        0,
1924865e5f61SKris Buschelman        0,
192599cafbc1SBarry Smith        0,
192699cafbc1SBarry Smith        0,
192799cafbc1SBarry Smith /*100*/0,
192899cafbc1SBarry Smith        0,
192999cafbc1SBarry Smith        0,
193099cafbc1SBarry Smith        0,
193199cafbc1SBarry Smith        0,
193299cafbc1SBarry Smith /*105*/0,
193399cafbc1SBarry Smith        MatRealPart_MPIBAIJ,
193499cafbc1SBarry Smith        MatImaginaryPart_MPIBAIJ};
193579bdfe76SSatish Balay 
19365ef9f2a5SBarry Smith 
1937e18c124aSSatish Balay EXTERN_C_BEGIN
19384a2ae208SSatish Balay #undef __FUNCT__
19394a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonalBlock_MPIBAIJ"
1940be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatGetDiagonalBlock_MPIBAIJ(Mat A,PetscTruth *iscopy,MatReuse reuse,Mat *a)
19415ef9f2a5SBarry Smith {
19425ef9f2a5SBarry Smith   PetscFunctionBegin;
19435ef9f2a5SBarry Smith   *a      = ((Mat_MPIBAIJ *)A->data)->A;
19445ef9f2a5SBarry Smith   *iscopy = PETSC_FALSE;
19455ef9f2a5SBarry Smith   PetscFunctionReturn(0);
19465ef9f2a5SBarry Smith }
1947e18c124aSSatish Balay EXTERN_C_END
194879bdfe76SSatish Balay 
1949273d9f13SBarry Smith EXTERN_C_BEGIN
1950f69a0ea3SMatthew Knepley extern PetscErrorCode PETSCMAT_DLLEXPORT MatConvert_MPIBAIJ_MPISBAIJ(Mat, MatType,MatReuse,Mat*);
1951d94109b8SHong Zhang EXTERN_C_END
1952d94109b8SHong Zhang 
1953aac34f13SBarry Smith #undef __FUNCT__
1954aac34f13SBarry Smith #define __FUNCT__ "MatMPIBAIJSetPreallocationCSR_MPIBAIJ"
1955b7940d39SSatish Balay PetscErrorCode MatMPIBAIJSetPreallocationCSR_MPIBAIJ(Mat B,PetscInt bs,const PetscInt Ii[],const PetscInt J[],const PetscScalar v[])
1956aac34f13SBarry Smith {
1957899cda47SBarry Smith   Mat_MPIBAIJ    *baij = (Mat_MPIBAIJ*)B->data;
1958899cda47SBarry Smith   PetscInt       m = B->rmap.n/bs,cstart = baij->cstartbs, cend = baij->cendbs,j,nnz,i,d;
1959899cda47SBarry Smith   PetscInt       *d_nnz,*o_nnz,nnz_max = 0,rstart = baij->rstartbs,ii;
1960aac34f13SBarry Smith   const PetscInt *JJ;
1961aac34f13SBarry Smith   PetscScalar    *values;
1962aac34f13SBarry Smith   PetscErrorCode ierr;
1963aac34f13SBarry Smith 
1964aac34f13SBarry Smith   PetscFunctionBegin;
1965aac34f13SBarry Smith #if defined(PETSC_OPT_g)
1966b7940d39SSatish Balay   if (Ii[0]) SETERRQ1(PETSC_ERR_ARG_RANGE,"Ii[0] must be 0 it is %D",Ii[0]);
1967aac34f13SBarry Smith #endif
1968aac34f13SBarry Smith   ierr  = PetscMalloc((2*m+1)*sizeof(PetscInt),&d_nnz);CHKERRQ(ierr);
1969aac34f13SBarry Smith   o_nnz = d_nnz + m;
1970aac34f13SBarry Smith 
1971aac34f13SBarry Smith   for (i=0; i<m; i++) {
1972b7940d39SSatish Balay     nnz     = Ii[i+1]- Ii[i];
1973b7940d39SSatish Balay     JJ      = J + Ii[i];
1974aac34f13SBarry Smith     nnz_max = PetscMax(nnz_max,nnz);
1975aac34f13SBarry Smith #if defined(PETSC_OPT_g)
1976aac34f13SBarry Smith     if (nnz < 0) SETERRQ1(PETSC_ERR_ARG_RANGE,"Local row %D has a negative %D number of columns",i,nnz);
1977aac34f13SBarry Smith #endif
1978aac34f13SBarry Smith     for (j=0; j<nnz; j++) {
1979aac34f13SBarry Smith       if (*JJ >= cstart) break;
1980aac34f13SBarry Smith       JJ++;
1981aac34f13SBarry Smith     }
1982aac34f13SBarry Smith     d = 0;
1983aac34f13SBarry Smith     for (; j<nnz; j++) {
1984aac34f13SBarry Smith       if (*JJ++ >= cend) break;
1985aac34f13SBarry Smith       d++;
1986aac34f13SBarry Smith     }
1987aac34f13SBarry Smith     d_nnz[i] = d;
1988aac34f13SBarry Smith     o_nnz[i] = nnz - d;
1989aac34f13SBarry Smith   }
1990aac34f13SBarry Smith   ierr = MatMPIBAIJSetPreallocation(B,bs,0,d_nnz,0,o_nnz);CHKERRQ(ierr);
1991aac34f13SBarry Smith   ierr = PetscFree(d_nnz);CHKERRQ(ierr);
1992aac34f13SBarry Smith 
1993aac34f13SBarry Smith   if (v) values = (PetscScalar*)v;
1994aac34f13SBarry Smith   else {
1995aac34f13SBarry Smith     ierr = PetscMalloc(bs*bs*(nnz_max+1)*sizeof(PetscScalar),&values);CHKERRQ(ierr);
1996aac34f13SBarry Smith     ierr = PetscMemzero(values,bs*bs*nnz_max*sizeof(PetscScalar));CHKERRQ(ierr);
1997aac34f13SBarry Smith   }
1998aac34f13SBarry Smith 
1999aac34f13SBarry Smith   for (i=0; i<m; i++) {
2000aac34f13SBarry Smith     ii   = i + rstart;
2001b7940d39SSatish Balay     nnz  = Ii[i+1]- Ii[i];
2002b7940d39SSatish Balay     ierr = MatSetValuesBlocked_MPIBAIJ(B,1,&ii,nnz,J+Ii[i],values+(v ? Ii[i] : 0),INSERT_VALUES);CHKERRQ(ierr);
2003aac34f13SBarry Smith   }
2004aac34f13SBarry Smith   ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
2005aac34f13SBarry Smith   ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
2006aac34f13SBarry Smith 
2007aac34f13SBarry Smith   if (!v) {
2008aac34f13SBarry Smith     ierr = PetscFree(values);CHKERRQ(ierr);
2009aac34f13SBarry Smith   }
2010aac34f13SBarry Smith   PetscFunctionReturn(0);
2011aac34f13SBarry Smith }
2012aac34f13SBarry Smith 
2013aac34f13SBarry Smith #undef __FUNCT__
2014aac34f13SBarry Smith #define __FUNCT__ "MatMPIBAIJSetPreallocationCSR"
2015aac34f13SBarry Smith /*@C
2016aac34f13SBarry Smith    MatMPIBAIJSetPreallocationCSR - Allocates memory for a sparse parallel matrix in AIJ format
2017aac34f13SBarry Smith    (the default parallel PETSc format).
2018aac34f13SBarry Smith 
2019aac34f13SBarry Smith    Collective on MPI_Comm
2020aac34f13SBarry Smith 
2021aac34f13SBarry Smith    Input Parameters:
2022aac34f13SBarry Smith +  A - the matrix
2023aac34f13SBarry Smith .  i - the indices into j for the start of each local row (starts with zero)
2024aac34f13SBarry Smith .  j - the column indices for each local row (starts with zero) these must be sorted for each row
2025aac34f13SBarry Smith -  v - optional values in the matrix
2026aac34f13SBarry Smith 
2027aac34f13SBarry Smith    Level: developer
2028aac34f13SBarry Smith 
2029aac34f13SBarry Smith .keywords: matrix, aij, compressed row, sparse, parallel
2030aac34f13SBarry Smith 
2031aac34f13SBarry Smith .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatMPIBAIJSetPreallocation(), MatCreateMPIAIJ(), MPIAIJ
2032aac34f13SBarry Smith @*/
2033be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPIBAIJSetPreallocationCSR(Mat B,PetscInt bs,const PetscInt i[],const PetscInt j[], const PetscScalar v[])
2034aac34f13SBarry Smith {
2035aac34f13SBarry Smith   PetscErrorCode ierr,(*f)(Mat,PetscInt,const PetscInt[],const PetscInt[],const PetscScalar[]);
2036aac34f13SBarry Smith 
2037aac34f13SBarry Smith   PetscFunctionBegin;
2038aac34f13SBarry Smith   ierr = PetscObjectQueryFunction((PetscObject)B,"MatMPIBAIJSetPreallocationCSR_C",(void (**)(void))&f);CHKERRQ(ierr);
2039aac34f13SBarry Smith   if (f) {
2040aac34f13SBarry Smith     ierr = (*f)(B,bs,i,j,v);CHKERRQ(ierr);
2041aac34f13SBarry Smith   }
2042aac34f13SBarry Smith   PetscFunctionReturn(0);
2043aac34f13SBarry Smith }
2044aac34f13SBarry Smith 
2045d94109b8SHong Zhang EXTERN_C_BEGIN
20464a2ae208SSatish Balay #undef __FUNCT__
2047a23d5eceSKris Buschelman #define __FUNCT__ "MatMPIBAIJSetPreallocation_MPIBAIJ"
2048be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPIBAIJSetPreallocation_MPIBAIJ(Mat B,PetscInt bs,PetscInt d_nz,PetscInt *d_nnz,PetscInt o_nz,PetscInt *o_nnz)
2049a23d5eceSKris Buschelman {
2050a23d5eceSKris Buschelman   Mat_MPIBAIJ    *b;
2051dfbe8321SBarry Smith   PetscErrorCode ierr;
2052b24ad042SBarry Smith   PetscInt       i;
2053a23d5eceSKris Buschelman 
2054a23d5eceSKris Buschelman   PetscFunctionBegin;
2055a23d5eceSKris Buschelman   B->preallocated = PETSC_TRUE;
20567adad957SLisandro Dalcin   ierr = PetscOptionsBegin(((PetscObject)B)->comm,((PetscObject)B)->prefix,"Options for MPIBAIJ matrix","Mat");CHKERRQ(ierr);
20578c07d4e3SBarry Smith     ierr = PetscOptionsInt("-mat_block_size","Set the blocksize used to store the matrix","MatMPIBAIJSetPreallocation",bs,&bs,PETSC_NULL);CHKERRQ(ierr);
20588c07d4e3SBarry Smith   ierr = PetscOptionsEnd();CHKERRQ(ierr);
2059a23d5eceSKris Buschelman 
2060a23d5eceSKris Buschelman   if (bs < 1) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Invalid block size specified, must be positive");
2061a23d5eceSKris Buschelman   if (d_nz == PETSC_DEFAULT || d_nz == PETSC_DECIDE) d_nz = 5;
2062a23d5eceSKris Buschelman   if (o_nz == PETSC_DEFAULT || o_nz == PETSC_DECIDE) o_nz = 2;
206377431f27SBarry Smith   if (d_nz < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"d_nz cannot be less than 0: value %D",d_nz);
206477431f27SBarry Smith   if (o_nz < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"o_nz cannot be less than 0: value %D",o_nz);
2065899cda47SBarry Smith 
2066899cda47SBarry Smith   B->rmap.bs  = bs;
2067899cda47SBarry Smith   B->cmap.bs  = bs;
20686148ca0dSBarry Smith   ierr = PetscMapSetUp(&B->rmap);CHKERRQ(ierr);
20696148ca0dSBarry Smith   ierr = PetscMapSetUp(&B->cmap);CHKERRQ(ierr);
2070899cda47SBarry Smith 
2071a23d5eceSKris Buschelman   if (d_nnz) {
2072899cda47SBarry Smith     for (i=0; i<B->rmap.n/bs; i++) {
207377431f27SBarry Smith       if (d_nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"d_nnz cannot be less than -1: local row %D value %D",i,d_nnz[i]);
2074a23d5eceSKris Buschelman     }
2075a23d5eceSKris Buschelman   }
2076a23d5eceSKris Buschelman   if (o_nnz) {
2077899cda47SBarry Smith     for (i=0; i<B->rmap.n/bs; i++) {
207877431f27SBarry Smith       if (o_nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"o_nnz cannot be less than -1: local row %D value %D",i,o_nnz[i]);
2079a23d5eceSKris Buschelman     }
2080a23d5eceSKris Buschelman   }
2081a23d5eceSKris Buschelman 
2082a23d5eceSKris Buschelman   b = (Mat_MPIBAIJ*)B->data;
2083a23d5eceSKris Buschelman   b->bs2 = bs*bs;
2084899cda47SBarry Smith   b->mbs = B->rmap.n/bs;
2085899cda47SBarry Smith   b->nbs = B->cmap.n/bs;
2086899cda47SBarry Smith   b->Mbs = B->rmap.N/bs;
2087899cda47SBarry Smith   b->Nbs = B->cmap.N/bs;
2088a23d5eceSKris Buschelman 
2089a23d5eceSKris Buschelman   for (i=0; i<=b->size; i++) {
2090899cda47SBarry Smith     b->rangebs[i] = B->rmap.range[i]/bs;
2091a23d5eceSKris Buschelman   }
2092899cda47SBarry Smith   b->rstartbs = B->rmap.rstart/bs;
2093899cda47SBarry Smith   b->rendbs   = B->rmap.rend/bs;
2094899cda47SBarry Smith   b->cstartbs = B->cmap.rstart/bs;
2095899cda47SBarry Smith   b->cendbs   = B->cmap.rend/bs;
2096a23d5eceSKris Buschelman 
2097f69a0ea3SMatthew Knepley   ierr = MatCreate(PETSC_COMM_SELF,&b->A);CHKERRQ(ierr);
2098899cda47SBarry Smith   ierr = MatSetSizes(b->A,B->rmap.n,B->cmap.n,B->rmap.n,B->cmap.n);CHKERRQ(ierr);
20999c097c71SKris Buschelman   ierr = MatSetType(b->A,MATSEQBAIJ);CHKERRQ(ierr);
2100c60e587dSKris Buschelman   ierr = MatSeqBAIJSetPreallocation(b->A,bs,d_nz,d_nnz);CHKERRQ(ierr);
210152e6d16bSBarry Smith   ierr = PetscLogObjectParent(B,b->A);CHKERRQ(ierr);
2102f69a0ea3SMatthew Knepley   ierr = MatCreate(PETSC_COMM_SELF,&b->B);CHKERRQ(ierr);
2103899cda47SBarry Smith   ierr = MatSetSizes(b->B,B->rmap.n,B->cmap.N,B->rmap.n,B->cmap.N);CHKERRQ(ierr);
21049c097c71SKris Buschelman   ierr = MatSetType(b->B,MATSEQBAIJ);CHKERRQ(ierr);
2105c60e587dSKris Buschelman   ierr = MatSeqBAIJSetPreallocation(b->B,bs,o_nz,o_nnz);CHKERRQ(ierr);
210652e6d16bSBarry Smith   ierr = PetscLogObjectParent(B,b->B);CHKERRQ(ierr);
2107c60e587dSKris Buschelman 
21087adad957SLisandro Dalcin   ierr = MatStashCreate_Private(((PetscObject)B)->comm,bs,&B->bstash);CHKERRQ(ierr);
2109a23d5eceSKris Buschelman 
2110a23d5eceSKris Buschelman   PetscFunctionReturn(0);
2111a23d5eceSKris Buschelman }
2112a23d5eceSKris Buschelman EXTERN_C_END
2113a23d5eceSKris Buschelman 
2114a23d5eceSKris Buschelman EXTERN_C_BEGIN
2115be1d678aSKris Buschelman EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatDiagonalScaleLocal_MPIBAIJ(Mat,Vec);
2116be1d678aSKris Buschelman EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatSetHashTableFactor_MPIBAIJ(Mat,PetscReal);
211792b32695SKris Buschelman EXTERN_C_END
21185bf65638SKris Buschelman 
21190bad9183SKris Buschelman /*MC
2120fafad747SKris Buschelman    MATMPIBAIJ - MATMPIBAIJ = "mpibaij" - A matrix type to be used for distributed block sparse matrices.
21210bad9183SKris Buschelman 
21220bad9183SKris Buschelman    Options Database Keys:
21238c07d4e3SBarry Smith + -mat_type mpibaij - sets the matrix type to "mpibaij" during a call to MatSetFromOptions()
21248c07d4e3SBarry Smith . -mat_block_size <bs> - set the blocksize used to store the matrix
21258c07d4e3SBarry Smith - -mat_use_hash_table <fact>
21260bad9183SKris Buschelman 
21270bad9183SKris Buschelman   Level: beginner
21280bad9183SKris Buschelman 
21290bad9183SKris Buschelman .seealso: MatCreateMPIBAIJ
21300bad9183SKris Buschelman M*/
21310bad9183SKris Buschelman 
213292b32695SKris Buschelman EXTERN_C_BEGIN
2133a23d5eceSKris Buschelman #undef __FUNCT__
21344a2ae208SSatish Balay #define __FUNCT__ "MatCreate_MPIBAIJ"
2135be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreate_MPIBAIJ(Mat B)
2136273d9f13SBarry Smith {
2137273d9f13SBarry Smith   Mat_MPIBAIJ    *b;
2138dfbe8321SBarry Smith   PetscErrorCode ierr;
2139273d9f13SBarry Smith   PetscTruth     flg;
2140273d9f13SBarry Smith 
2141273d9f13SBarry Smith   PetscFunctionBegin;
214238f2d2fdSLisandro Dalcin   ierr = PetscNewLog(B,Mat_MPIBAIJ,&b);CHKERRQ(ierr);
214382502324SSatish Balay   B->data = (void*)b;
214482502324SSatish Balay 
2145085a36d4SBarry Smith 
2146273d9f13SBarry Smith   ierr    = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr);
2147273d9f13SBarry Smith   B->mapping    = 0;
2148273d9f13SBarry Smith   B->factor     = 0;
2149273d9f13SBarry Smith   B->assembled  = PETSC_FALSE;
2150273d9f13SBarry Smith 
2151273d9f13SBarry Smith   B->insertmode = NOT_SET_VALUES;
21527adad957SLisandro Dalcin   ierr = MPI_Comm_rank(((PetscObject)B)->comm,&b->rank);CHKERRQ(ierr);
21537adad957SLisandro Dalcin   ierr = MPI_Comm_size(((PetscObject)B)->comm,&b->size);CHKERRQ(ierr);
2154273d9f13SBarry Smith 
2155273d9f13SBarry Smith   /* build local table of row and column ownerships */
2156899cda47SBarry Smith   ierr = PetscMalloc((b->size+1)*sizeof(PetscInt),&b->rangebs);CHKERRQ(ierr);
2157273d9f13SBarry Smith 
2158273d9f13SBarry Smith   /* build cache for off array entries formed */
21597adad957SLisandro Dalcin   ierr = MatStashCreate_Private(((PetscObject)B)->comm,1,&B->stash);CHKERRQ(ierr);
2160273d9f13SBarry Smith   b->donotstash  = PETSC_FALSE;
2161273d9f13SBarry Smith   b->colmap      = PETSC_NULL;
2162273d9f13SBarry Smith   b->garray      = PETSC_NULL;
2163273d9f13SBarry Smith   b->roworiented = PETSC_TRUE;
2164273d9f13SBarry Smith 
2165273d9f13SBarry Smith   /* stuff used in block assembly */
2166273d9f13SBarry Smith   b->barray       = 0;
2167273d9f13SBarry Smith 
2168273d9f13SBarry Smith   /* stuff used for matrix vector multiply */
2169273d9f13SBarry Smith   b->lvec         = 0;
2170273d9f13SBarry Smith   b->Mvctx        = 0;
2171273d9f13SBarry Smith 
2172273d9f13SBarry Smith   /* stuff for MatGetRow() */
2173273d9f13SBarry Smith   b->rowindices   = 0;
2174273d9f13SBarry Smith   b->rowvalues    = 0;
2175273d9f13SBarry Smith   b->getrowactive = PETSC_FALSE;
2176273d9f13SBarry Smith 
2177273d9f13SBarry Smith   /* hash table stuff */
2178273d9f13SBarry Smith   b->ht           = 0;
2179273d9f13SBarry Smith   b->hd           = 0;
2180273d9f13SBarry Smith   b->ht_size      = 0;
2181273d9f13SBarry Smith   b->ht_flag      = PETSC_FALSE;
2182273d9f13SBarry Smith   b->ht_fact      = 0;
2183273d9f13SBarry Smith   b->ht_total_ct  = 0;
2184273d9f13SBarry Smith   b->ht_insert_ct = 0;
2185273d9f13SBarry Smith 
21867adad957SLisandro Dalcin   ierr = PetscOptionsBegin(((PetscObject)B)->comm,PETSC_NULL,"Options for loading MPIBAIJ matrix 1","Mat");CHKERRQ(ierr);
21878c07d4e3SBarry Smith     ierr = PetscOptionsTruth("-mat_use_hash_table","Use hash table to save memory in constructing matrix","MatSetOption",PETSC_FALSE,&flg,PETSC_NULL);CHKERRQ(ierr);
2188273d9f13SBarry Smith     if (flg) {
2189f6275e2eSBarry Smith       PetscReal fact = 1.39;
21904e0d8c25SBarry Smith       ierr = MatSetOption(B,MAT_USE_HASH_TABLE,PETSC_TRUE);CHKERRQ(ierr);
21918c07d4e3SBarry Smith       ierr = PetscOptionsReal("-mat_use_hash_table","Use hash table factor","MatMPIBAIJSetHashTableFactor",fact,&fact,PETSC_NULL);CHKERRQ(ierr);
2192273d9f13SBarry Smith       if (fact <= 1.0) fact = 1.39;
2193273d9f13SBarry Smith       ierr = MatMPIBAIJSetHashTableFactor(B,fact);CHKERRQ(ierr);
21941e2582c4SBarry Smith       ierr = PetscInfo1(B,"Hash table Factor used %5.2f\n",fact);CHKERRQ(ierr);
2195273d9f13SBarry Smith     }
21968c07d4e3SBarry Smith   ierr = PetscOptionsEnd();CHKERRQ(ierr);
21978c07d4e3SBarry Smith 
2198273d9f13SBarry Smith   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatStoreValues_C",
2199273d9f13SBarry Smith                                      "MatStoreValues_MPIBAIJ",
2200273d9f13SBarry Smith                                      MatStoreValues_MPIBAIJ);CHKERRQ(ierr);
2201273d9f13SBarry Smith   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatRetrieveValues_C",
2202273d9f13SBarry Smith                                      "MatRetrieveValues_MPIBAIJ",
2203273d9f13SBarry Smith                                      MatRetrieveValues_MPIBAIJ);CHKERRQ(ierr);
2204273d9f13SBarry Smith   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetDiagonalBlock_C",
2205273d9f13SBarry Smith                                      "MatGetDiagonalBlock_MPIBAIJ",
2206273d9f13SBarry Smith                                      MatGetDiagonalBlock_MPIBAIJ);CHKERRQ(ierr);
2207a23d5eceSKris Buschelman   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatMPIBAIJSetPreallocation_C",
2208a23d5eceSKris Buschelman                                      "MatMPIBAIJSetPreallocation_MPIBAIJ",
2209a23d5eceSKris Buschelman                                      MatMPIBAIJSetPreallocation_MPIBAIJ);CHKERRQ(ierr);
2210aac34f13SBarry Smith   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatMPIBAIJSetPreallocationCSR_C",
221144ec7894SLisandro Dalcin 				     "MatMPIBAIJSetPreallocationCSR_MPIBAIJ",
2212aac34f13SBarry Smith 				     MatMPIBAIJSetPreallocationCSR_MPIBAIJ);CHKERRQ(ierr);
221392b32695SKris Buschelman   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatDiagonalScaleLocal_C",
221492b32695SKris Buschelman                                      "MatDiagonalScaleLocal_MPIBAIJ",
221592b32695SKris Buschelman                                      MatDiagonalScaleLocal_MPIBAIJ);CHKERRQ(ierr);
22165bf65638SKris Buschelman   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatSetHashTableFactor_C",
22175bf65638SKris Buschelman                                      "MatSetHashTableFactor_MPIBAIJ",
22185bf65638SKris Buschelman                                      MatSetHashTableFactor_MPIBAIJ);CHKERRQ(ierr);
221917667f90SBarry Smith   ierr = PetscObjectChangeTypeName((PetscObject)B,MATMPIBAIJ);CHKERRQ(ierr);
2220273d9f13SBarry Smith   PetscFunctionReturn(0);
2221273d9f13SBarry Smith }
2222273d9f13SBarry Smith EXTERN_C_END
2223273d9f13SBarry Smith 
2224209238afSKris Buschelman /*MC
2225002d173eSKris Buschelman    MATBAIJ - MATBAIJ = "baij" - A matrix type to be used for block sparse matrices.
2226209238afSKris Buschelman 
2227209238afSKris Buschelman    This matrix type is identical to MATSEQBAIJ when constructed with a single process communicator,
2228209238afSKris Buschelman    and MATMPIBAIJ otherwise.
2229209238afSKris Buschelman 
2230209238afSKris Buschelman    Options Database Keys:
2231209238afSKris Buschelman . -mat_type baij - sets the matrix type to "baij" during a call to MatSetFromOptions()
2232209238afSKris Buschelman 
2233209238afSKris Buschelman   Level: beginner
2234209238afSKris Buschelman 
2235aac34f13SBarry Smith .seealso: MatCreateMPIBAIJ(),MATSEQBAIJ,MATMPIBAIJ, MatMPIBAIJSetPreallocation(), MatMPIBAIJSetPreallocationCSR()
2236209238afSKris Buschelman M*/
2237209238afSKris Buschelman 
2238209238afSKris Buschelman EXTERN_C_BEGIN
2239209238afSKris Buschelman #undef __FUNCT__
2240209238afSKris Buschelman #define __FUNCT__ "MatCreate_BAIJ"
2241be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreate_BAIJ(Mat A)
2242dfbe8321SBarry Smith {
22436849ba73SBarry Smith   PetscErrorCode ierr;
2244b24ad042SBarry Smith   PetscMPIInt    size;
2245209238afSKris Buschelman 
2246209238afSKris Buschelman   PetscFunctionBegin;
22477adad957SLisandro Dalcin   ierr = MPI_Comm_size(((PetscObject)A)->comm,&size);CHKERRQ(ierr);
2248209238afSKris Buschelman   if (size == 1) {
2249209238afSKris Buschelman     ierr = MatSetType(A,MATSEQBAIJ);CHKERRQ(ierr);
2250209238afSKris Buschelman   } else {
2251209238afSKris Buschelman     ierr = MatSetType(A,MATMPIBAIJ);CHKERRQ(ierr);
2252209238afSKris Buschelman   }
2253209238afSKris Buschelman   PetscFunctionReturn(0);
2254209238afSKris Buschelman }
2255209238afSKris Buschelman EXTERN_C_END
2256209238afSKris Buschelman 
22574a2ae208SSatish Balay #undef __FUNCT__
22584a2ae208SSatish Balay #define __FUNCT__ "MatMPIBAIJSetPreallocation"
2259273d9f13SBarry Smith /*@C
2260aac34f13SBarry Smith    MatMPIBAIJSetPreallocation - Allocates memory for a sparse parallel matrix in block AIJ format
2261273d9f13SBarry Smith    (block compressed row).  For good matrix assembly performance
2262273d9f13SBarry Smith    the user should preallocate the matrix storage by setting the parameters
2263273d9f13SBarry Smith    d_nz (or d_nnz) and o_nz (or o_nnz).  By setting these parameters accurately,
2264273d9f13SBarry Smith    performance can be increased by more than a factor of 50.
2265273d9f13SBarry Smith 
2266273d9f13SBarry Smith    Collective on Mat
2267273d9f13SBarry Smith 
2268273d9f13SBarry Smith    Input Parameters:
2269273d9f13SBarry Smith +  A - the matrix
2270273d9f13SBarry Smith .  bs   - size of blockk
2271273d9f13SBarry Smith .  d_nz  - number of block nonzeros per block row in diagonal portion of local
2272273d9f13SBarry Smith            submatrix  (same for all local rows)
2273273d9f13SBarry Smith .  d_nnz - array containing the number of block nonzeros in the various block rows
2274273d9f13SBarry Smith            of the in diagonal portion of the local (possibly different for each block
2275273d9f13SBarry Smith            row) or PETSC_NULL.  You must leave room for the diagonal entry even if it is zero.
2276273d9f13SBarry Smith .  o_nz  - number of block nonzeros per block row in the off-diagonal portion of local
2277273d9f13SBarry Smith            submatrix (same for all local rows).
2278273d9f13SBarry Smith -  o_nnz - array containing the number of nonzeros in the various block rows of the
2279273d9f13SBarry Smith            off-diagonal portion of the local submatrix (possibly different for
2280273d9f13SBarry Smith            each block row) or PETSC_NULL.
2281273d9f13SBarry Smith 
228249a6f317SBarry Smith    If the *_nnz parameter is given then the *_nz parameter is ignored
2283273d9f13SBarry Smith 
2284273d9f13SBarry Smith    Options Database Keys:
22858c07d4e3SBarry Smith +   -mat_block_size - size of the blocks to use
22868c07d4e3SBarry Smith -   -mat_use_hash_table <fact>
2287273d9f13SBarry Smith 
2288273d9f13SBarry Smith    Notes:
2289273d9f13SBarry Smith    If PETSC_DECIDE or  PETSC_DETERMINE is used for a particular argument on one processor
2290273d9f13SBarry Smith    than it must be used on all processors that share the object for that argument.
2291273d9f13SBarry Smith 
2292273d9f13SBarry Smith    Storage Information:
2293273d9f13SBarry Smith    For a square global matrix we define each processor's diagonal portion
2294273d9f13SBarry Smith    to be its local rows and the corresponding columns (a square submatrix);
2295273d9f13SBarry Smith    each processor's off-diagonal portion encompasses the remainder of the
2296273d9f13SBarry Smith    local matrix (a rectangular submatrix).
2297273d9f13SBarry Smith 
2298273d9f13SBarry Smith    The user can specify preallocated storage for the diagonal part of
2299273d9f13SBarry Smith    the local submatrix with either d_nz or d_nnz (not both).  Set
2300273d9f13SBarry Smith    d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic
2301273d9f13SBarry Smith    memory allocation.  Likewise, specify preallocated storage for the
2302273d9f13SBarry Smith    off-diagonal part of the local submatrix with o_nz or o_nnz (not both).
2303273d9f13SBarry Smith 
2304273d9f13SBarry Smith    Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
2305273d9f13SBarry Smith    the figure below we depict these three local rows and all columns (0-11).
2306273d9f13SBarry Smith 
2307273d9f13SBarry Smith .vb
2308273d9f13SBarry Smith            0 1 2 3 4 5 6 7 8 9 10 11
2309273d9f13SBarry Smith           -------------------
2310273d9f13SBarry Smith    row 3  |  o o o d d d o o o o o o
2311273d9f13SBarry Smith    row 4  |  o o o d d d o o o o o o
2312273d9f13SBarry Smith    row 5  |  o o o d d d o o o o o o
2313273d9f13SBarry Smith           -------------------
2314273d9f13SBarry Smith .ve
2315273d9f13SBarry Smith 
2316273d9f13SBarry Smith    Thus, any entries in the d locations are stored in the d (diagonal)
2317273d9f13SBarry Smith    submatrix, and any entries in the o locations are stored in the
2318273d9f13SBarry Smith    o (off-diagonal) submatrix.  Note that the d and the o submatrices are
2319273d9f13SBarry Smith    stored simply in the MATSEQBAIJ format for compressed row storage.
2320273d9f13SBarry Smith 
2321273d9f13SBarry Smith    Now d_nz should indicate the number of block nonzeros per row in the d matrix,
2322273d9f13SBarry Smith    and o_nz should indicate the number of block nonzeros per row in the o matrix.
2323273d9f13SBarry Smith    In general, for PDE problems in which most nonzeros are near the diagonal,
2324273d9f13SBarry Smith    one expects d_nz >> o_nz.   For large problems you MUST preallocate memory
2325273d9f13SBarry Smith    or you will get TERRIBLE performance; see the users' manual chapter on
2326273d9f13SBarry Smith    matrices.
2327273d9f13SBarry Smith 
2328aa95bbe8SBarry Smith    You can call MatGetInfo() to get information on how effective the preallocation was;
2329aa95bbe8SBarry Smith    for example the fields mallocs,nz_allocated,nz_used,nz_unneeded;
2330aa95bbe8SBarry Smith    You can also run with the option -info and look for messages with the string
2331aa95bbe8SBarry Smith    malloc in them to see if additional memory allocation was needed.
2332aa95bbe8SBarry Smith 
2333273d9f13SBarry Smith    Level: intermediate
2334273d9f13SBarry Smith 
2335273d9f13SBarry Smith .keywords: matrix, block, aij, compressed row, sparse, parallel
2336273d9f13SBarry Smith 
2337aac34f13SBarry Smith .seealso: MatCreate(), MatCreateSeqBAIJ(), MatSetValues(), MatCreateMPIBAIJ(), MatMPIBAIJSetPreallocationCSR()
2338273d9f13SBarry Smith @*/
2339be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPIBAIJSetPreallocation(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[])
2340273d9f13SBarry Smith {
2341b24ad042SBarry Smith   PetscErrorCode ierr,(*f)(Mat,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[]);
2342273d9f13SBarry Smith 
2343273d9f13SBarry Smith   PetscFunctionBegin;
2344a23d5eceSKris Buschelman   ierr = PetscObjectQueryFunction((PetscObject)B,"MatMPIBAIJSetPreallocation_C",(void (**)(void))&f);CHKERRQ(ierr);
2345a23d5eceSKris Buschelman   if (f) {
2346a23d5eceSKris Buschelman     ierr = (*f)(B,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr);
2347273d9f13SBarry Smith   }
2348273d9f13SBarry Smith   PetscFunctionReturn(0);
2349273d9f13SBarry Smith }
2350273d9f13SBarry Smith 
23514a2ae208SSatish Balay #undef __FUNCT__
23524a2ae208SSatish Balay #define __FUNCT__ "MatCreateMPIBAIJ"
235379bdfe76SSatish Balay /*@C
235479bdfe76SSatish Balay    MatCreateMPIBAIJ - Creates a sparse parallel matrix in block AIJ format
235579bdfe76SSatish Balay    (block compressed row).  For good matrix assembly performance
235679bdfe76SSatish Balay    the user should preallocate the matrix storage by setting the parameters
235779bdfe76SSatish Balay    d_nz (or d_nnz) and o_nz (or o_nnz).  By setting these parameters accurately,
235879bdfe76SSatish Balay    performance can be increased by more than a factor of 50.
235979bdfe76SSatish Balay 
2360db81eaa0SLois Curfman McInnes    Collective on MPI_Comm
2361db81eaa0SLois Curfman McInnes 
236279bdfe76SSatish Balay    Input Parameters:
2363db81eaa0SLois Curfman McInnes +  comm - MPI communicator
236479bdfe76SSatish Balay .  bs   - size of blockk
236579bdfe76SSatish Balay .  m - number of local rows (or PETSC_DECIDE to have calculated if M is given)
236692e8d321SLois Curfman McInnes            This value should be the same as the local size used in creating the
236792e8d321SLois Curfman McInnes            y vector for the matrix-vector product y = Ax.
236892e8d321SLois Curfman McInnes .  n - number of local columns (or PETSC_DECIDE to have calculated if N is given)
236992e8d321SLois Curfman McInnes            This value should be the same as the local size used in creating the
237092e8d321SLois Curfman McInnes            x vector for the matrix-vector product y = Ax.
2371be79a94dSBarry Smith .  M - number of global rows (or PETSC_DETERMINE to have calculated if m is given)
2372be79a94dSBarry Smith .  N - number of global columns (or PETSC_DETERMINE to have calculated if n is given)
237347a75d0bSBarry Smith .  d_nz  - number of nonzero blocks per block row in diagonal portion of local
237479bdfe76SSatish Balay            submatrix  (same for all local rows)
237547a75d0bSBarry Smith .  d_nnz - array containing the number of nonzero blocks in the various block rows
237692e8d321SLois Curfman McInnes            of the in diagonal portion of the local (possibly different for each block
2377db81eaa0SLois Curfman McInnes            row) or PETSC_NULL.  You must leave room for the diagonal entry even if it is zero.
237847a75d0bSBarry Smith .  o_nz  - number of nonzero blocks per block row in the off-diagonal portion of local
237979bdfe76SSatish Balay            submatrix (same for all local rows).
238047a75d0bSBarry Smith -  o_nnz - array containing the number of nonzero blocks in the various block rows of the
238192e8d321SLois Curfman McInnes            off-diagonal portion of the local submatrix (possibly different for
238292e8d321SLois Curfman McInnes            each block row) or PETSC_NULL.
238379bdfe76SSatish Balay 
238479bdfe76SSatish Balay    Output Parameter:
238579bdfe76SSatish Balay .  A - the matrix
238679bdfe76SSatish Balay 
2387db81eaa0SLois Curfman McInnes    Options Database Keys:
23888c07d4e3SBarry Smith +   -mat_block_size - size of the blocks to use
23898c07d4e3SBarry Smith -   -mat_use_hash_table <fact>
23903ffaccefSLois Curfman McInnes 
2391175b88e8SBarry Smith    It is recommended that one use the MatCreate(), MatSetType() and/or MatSetFromOptions(),
2392175b88e8SBarry Smith    MatXXXXSetPreallocation() paradgm instead of this routine directly. This is definitely
2393175b88e8SBarry Smith    true if you plan to use the external direct solvers such as SuperLU, MUMPS or Spooles.
2394175b88e8SBarry Smith    [MatXXXXSetPreallocation() is, for example, MatSeqAIJSetPreallocation]
2395175b88e8SBarry Smith 
2396b259b22eSLois Curfman McInnes    Notes:
239749a6f317SBarry Smith    If the *_nnz parameter is given then the *_nz parameter is ignored
239849a6f317SBarry Smith 
239947a75d0bSBarry Smith    A nonzero block is any block that as 1 or more nonzeros in it
240047a75d0bSBarry Smith 
240179bdfe76SSatish Balay    The user MUST specify either the local or global matrix dimensions
240279bdfe76SSatish Balay    (possibly both).
240379bdfe76SSatish Balay 
2404be79a94dSBarry Smith    If PETSC_DECIDE or  PETSC_DETERMINE is used for a particular argument on one processor
2405be79a94dSBarry Smith    than it must be used on all processors that share the object for that argument.
2406be79a94dSBarry Smith 
240779bdfe76SSatish Balay    Storage Information:
240879bdfe76SSatish Balay    For a square global matrix we define each processor's diagonal portion
240979bdfe76SSatish Balay    to be its local rows and the corresponding columns (a square submatrix);
241079bdfe76SSatish Balay    each processor's off-diagonal portion encompasses the remainder of the
241179bdfe76SSatish Balay    local matrix (a rectangular submatrix).
241279bdfe76SSatish Balay 
241379bdfe76SSatish Balay    The user can specify preallocated storage for the diagonal part of
241479bdfe76SSatish Balay    the local submatrix with either d_nz or d_nnz (not both).  Set
241579bdfe76SSatish Balay    d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic
241679bdfe76SSatish Balay    memory allocation.  Likewise, specify preallocated storage for the
241779bdfe76SSatish Balay    off-diagonal part of the local submatrix with o_nz or o_nnz (not both).
241879bdfe76SSatish Balay 
241979bdfe76SSatish Balay    Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
242079bdfe76SSatish Balay    the figure below we depict these three local rows and all columns (0-11).
242179bdfe76SSatish Balay 
2422db81eaa0SLois Curfman McInnes .vb
2423db81eaa0SLois Curfman McInnes            0 1 2 3 4 5 6 7 8 9 10 11
2424db81eaa0SLois Curfman McInnes           -------------------
2425db81eaa0SLois Curfman McInnes    row 3  |  o o o d d d o o o o o o
2426db81eaa0SLois Curfman McInnes    row 4  |  o o o d d d o o o o o o
2427db81eaa0SLois Curfman McInnes    row 5  |  o o o d d d o o o o o o
2428db81eaa0SLois Curfman McInnes           -------------------
2429db81eaa0SLois Curfman McInnes .ve
243079bdfe76SSatish Balay 
243179bdfe76SSatish Balay    Thus, any entries in the d locations are stored in the d (diagonal)
243279bdfe76SSatish Balay    submatrix, and any entries in the o locations are stored in the
243379bdfe76SSatish Balay    o (off-diagonal) submatrix.  Note that the d and the o submatrices are
243457b952d6SSatish Balay    stored simply in the MATSEQBAIJ format for compressed row storage.
243579bdfe76SSatish Balay 
2436d64ed03dSBarry Smith    Now d_nz should indicate the number of block nonzeros per row in the d matrix,
2437d64ed03dSBarry Smith    and o_nz should indicate the number of block nonzeros per row in the o matrix.
243879bdfe76SSatish Balay    In general, for PDE problems in which most nonzeros are near the diagonal,
243992e8d321SLois Curfman McInnes    one expects d_nz >> o_nz.   For large problems you MUST preallocate memory
244092e8d321SLois Curfman McInnes    or you will get TERRIBLE performance; see the users' manual chapter on
24416da5968aSLois Curfman McInnes    matrices.
244279bdfe76SSatish Balay 
2443027ccd11SLois Curfman McInnes    Level: intermediate
2444027ccd11SLois Curfman McInnes 
244592e8d321SLois Curfman McInnes .keywords: matrix, block, aij, compressed row, sparse, parallel
244679bdfe76SSatish Balay 
2447aac34f13SBarry Smith .seealso: MatCreate(), MatCreateSeqBAIJ(), MatSetValues(), MatCreateMPIBAIJ(), MatMPIBAIJSetPreallocation(), MatMPIBAIJSetPreallocationCSR()
244879bdfe76SSatish Balay @*/
2449be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreateMPIBAIJ(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[],Mat *A)
245079bdfe76SSatish Balay {
24516849ba73SBarry Smith   PetscErrorCode ierr;
2452b24ad042SBarry Smith   PetscMPIInt    size;
245379bdfe76SSatish Balay 
2454d64ed03dSBarry Smith   PetscFunctionBegin;
2455f69a0ea3SMatthew Knepley   ierr = MatCreate(comm,A);CHKERRQ(ierr);
2456f69a0ea3SMatthew Knepley   ierr = MatSetSizes(*A,m,n,M,N);CHKERRQ(ierr);
2457d132466eSBarry Smith   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
2458273d9f13SBarry Smith   if (size > 1) {
2459273d9f13SBarry Smith     ierr = MatSetType(*A,MATMPIBAIJ);CHKERRQ(ierr);
2460273d9f13SBarry Smith     ierr = MatMPIBAIJSetPreallocation(*A,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr);
2461273d9f13SBarry Smith   } else {
2462273d9f13SBarry Smith     ierr = MatSetType(*A,MATSEQBAIJ);CHKERRQ(ierr);
2463273d9f13SBarry Smith     ierr = MatSeqBAIJSetPreallocation(*A,bs,d_nz,d_nnz);CHKERRQ(ierr);
24643914022bSBarry Smith   }
24653a40ed3dSBarry Smith   PetscFunctionReturn(0);
246679bdfe76SSatish Balay }
2467026e39d0SSatish Balay 
24684a2ae208SSatish Balay #undef __FUNCT__
24694a2ae208SSatish Balay #define __FUNCT__ "MatDuplicate_MPIBAIJ"
24706849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIBAIJ(Mat matin,MatDuplicateOption cpvalues,Mat *newmat)
24710ac07820SSatish Balay {
24720ac07820SSatish Balay   Mat            mat;
24730ac07820SSatish Balay   Mat_MPIBAIJ    *a,*oldmat = (Mat_MPIBAIJ*)matin->data;
2474dfbe8321SBarry Smith   PetscErrorCode ierr;
2475b24ad042SBarry Smith   PetscInt       len=0;
24760ac07820SSatish Balay 
2477d64ed03dSBarry Smith   PetscFunctionBegin;
24780ac07820SSatish Balay   *newmat       = 0;
24797adad957SLisandro Dalcin   ierr = MatCreate(((PetscObject)matin)->comm,&mat);CHKERRQ(ierr);
2480899cda47SBarry Smith   ierr = MatSetSizes(mat,matin->rmap.n,matin->cmap.n,matin->rmap.N,matin->cmap.N);CHKERRQ(ierr);
24817adad957SLisandro Dalcin   ierr = MatSetType(mat,((PetscObject)matin)->type_name);CHKERRQ(ierr);
24821d5dac46SHong Zhang   ierr = PetscMemcpy(mat->ops,matin->ops,sizeof(struct _MatOps));CHKERRQ(ierr);
24837fff6886SHong Zhang 
24844beb1cfeSHong Zhang   mat->factor       = matin->factor;
2485273d9f13SBarry Smith   mat->preallocated = PETSC_TRUE;
24860ac07820SSatish Balay   mat->assembled    = PETSC_TRUE;
24877fff6886SHong Zhang   mat->insertmode   = NOT_SET_VALUES;
24887fff6886SHong Zhang 
2489273d9f13SBarry Smith   a      = (Mat_MPIBAIJ*)mat->data;
2490899cda47SBarry Smith   mat->rmap.bs  = matin->rmap.bs;
24910ac07820SSatish Balay   a->bs2   = oldmat->bs2;
24920ac07820SSatish Balay   a->mbs   = oldmat->mbs;
24930ac07820SSatish Balay   a->nbs   = oldmat->nbs;
24940ac07820SSatish Balay   a->Mbs   = oldmat->Mbs;
24950ac07820SSatish Balay   a->Nbs   = oldmat->Nbs;
24960ac07820SSatish Balay 
24977adad957SLisandro Dalcin   ierr = PetscMapCopy(((PetscObject)matin)->comm,&matin->rmap,&mat->rmap);CHKERRQ(ierr);
24987adad957SLisandro Dalcin   ierr = PetscMapCopy(((PetscObject)matin)->comm,&matin->cmap,&mat->cmap);CHKERRQ(ierr);
2499899cda47SBarry Smith 
25000ac07820SSatish Balay   a->size         = oldmat->size;
25010ac07820SSatish Balay   a->rank         = oldmat->rank;
2502aef5e8e0SSatish Balay   a->donotstash   = oldmat->donotstash;
2503aef5e8e0SSatish Balay   a->roworiented  = oldmat->roworiented;
2504aef5e8e0SSatish Balay   a->rowindices   = 0;
25050ac07820SSatish Balay   a->rowvalues    = 0;
25060ac07820SSatish Balay   a->getrowactive = PETSC_FALSE;
250730793edcSSatish Balay   a->barray       = 0;
2508899cda47SBarry Smith   a->rstartbs     = oldmat->rstartbs;
2509899cda47SBarry Smith   a->rendbs       = oldmat->rendbs;
2510899cda47SBarry Smith   a->cstartbs     = oldmat->cstartbs;
2511899cda47SBarry Smith   a->cendbs       = oldmat->cendbs;
25120ac07820SSatish Balay 
2513133cdb44SSatish Balay   /* hash table stuff */
2514133cdb44SSatish Balay   a->ht           = 0;
2515133cdb44SSatish Balay   a->hd           = 0;
2516133cdb44SSatish Balay   a->ht_size      = 0;
2517133cdb44SSatish Balay   a->ht_flag      = oldmat->ht_flag;
251825fdafccSSatish Balay   a->ht_fact      = oldmat->ht_fact;
2519133cdb44SSatish Balay   a->ht_total_ct  = 0;
2520133cdb44SSatish Balay   a->ht_insert_ct = 0;
2521133cdb44SSatish Balay 
2522899cda47SBarry Smith   ierr = PetscMemcpy(a->rangebs,oldmat->rangebs,(a->size+1)*sizeof(PetscInt));CHKERRQ(ierr);
25237adad957SLisandro Dalcin   ierr = MatStashCreate_Private(((PetscObject)matin)->comm,1,&mat->stash);CHKERRQ(ierr);
25247adad957SLisandro Dalcin   ierr = MatStashCreate_Private(((PetscObject)matin)->comm,matin->rmap.bs,&mat->bstash);CHKERRQ(ierr);
25250ac07820SSatish Balay   if (oldmat->colmap) {
2526aa482453SBarry Smith #if defined (PETSC_USE_CTABLE)
25270f5bd95cSBarry Smith   ierr = PetscTableCreateCopy(oldmat->colmap,&a->colmap);CHKERRQ(ierr);
252848e59246SSatish Balay #else
2529b24ad042SBarry Smith   ierr = PetscMalloc((a->Nbs)*sizeof(PetscInt),&a->colmap);CHKERRQ(ierr);
253052e6d16bSBarry Smith   ierr = PetscLogObjectMemory(mat,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr);
2531b24ad042SBarry Smith   ierr = PetscMemcpy(a->colmap,oldmat->colmap,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr);
253248e59246SSatish Balay #endif
25330ac07820SSatish Balay   } else a->colmap = 0;
25344beb1cfeSHong Zhang 
25350ac07820SSatish Balay   if (oldmat->garray && (len = ((Mat_SeqBAIJ*)(oldmat->B->data))->nbs)) {
2536b24ad042SBarry Smith     ierr = PetscMalloc(len*sizeof(PetscInt),&a->garray);CHKERRQ(ierr);
253752e6d16bSBarry Smith     ierr = PetscLogObjectMemory(mat,len*sizeof(PetscInt));CHKERRQ(ierr);
2538b24ad042SBarry Smith     ierr = PetscMemcpy(a->garray,oldmat->garray,len*sizeof(PetscInt));CHKERRQ(ierr);
25390ac07820SSatish Balay   } else a->garray = 0;
25400ac07820SSatish Balay 
25410ac07820SSatish Balay   ierr = VecDuplicate(oldmat->lvec,&a->lvec);CHKERRQ(ierr);
254252e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->lvec);CHKERRQ(ierr);
25430ac07820SSatish Balay   ierr = VecScatterCopy(oldmat->Mvctx,&a->Mvctx);CHKERRQ(ierr);
254452e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->Mvctx);CHKERRQ(ierr);
25457fff6886SHong Zhang 
25462e8a6d31SBarry Smith   ierr =  MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr);
254752e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->A);CHKERRQ(ierr);
25482e8a6d31SBarry Smith   ierr =  MatDuplicate(oldmat->B,cpvalues,&a->B);CHKERRQ(ierr);
254952e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->B);CHKERRQ(ierr);
25507adad957SLisandro Dalcin   ierr = PetscFListDuplicate(((PetscObject)matin)->qlist,&((PetscObject)mat)->qlist);CHKERRQ(ierr);
25510ac07820SSatish Balay   *newmat = mat;
25524beb1cfeSHong Zhang 
25533a40ed3dSBarry Smith   PetscFunctionReturn(0);
25540ac07820SSatish Balay }
255557b952d6SSatish Balay 
2556e090d566SSatish Balay #include "petscsys.h"
255757b952d6SSatish Balay 
25584a2ae208SSatish Balay #undef __FUNCT__
25594a2ae208SSatish Balay #define __FUNCT__ "MatLoad_MPIBAIJ"
2560f69a0ea3SMatthew Knepley PetscErrorCode MatLoad_MPIBAIJ(PetscViewer viewer, MatType type,Mat *newmat)
256157b952d6SSatish Balay {
256257b952d6SSatish Balay   Mat            A;
25636849ba73SBarry Smith   PetscErrorCode ierr;
2564b24ad042SBarry Smith   int            fd;
2565b24ad042SBarry Smith   PetscInt       i,nz,j,rstart,rend;
256687828ca2SBarry Smith   PetscScalar    *vals,*buf;
256757b952d6SSatish Balay   MPI_Comm       comm = ((PetscObject)viewer)->comm;
256857b952d6SSatish Balay   MPI_Status     status;
2569b24ad042SBarry Smith   PetscMPIInt    rank,size,maxnz;
2570b24ad042SBarry Smith   PetscInt       header[4],*rowlengths = 0,M,N,m,*rowners,*cols;
2571910ba992SMatthew Knepley   PetscInt       *locrowlens = PETSC_NULL,*procsnz = PETSC_NULL,*browners = PETSC_NULL;
2572167e7480SBarry Smith   PetscInt       jj,*mycols,*ibuf,bs=1,Mbs,mbs,extra_rows,mmax;
2573dc231df0SBarry Smith   PetscMPIInt    tag = ((PetscObject)viewer)->tag;
2574910ba992SMatthew Knepley   PetscInt       *dlens = PETSC_NULL,*odlens = PETSC_NULL,*mask = PETSC_NULL,*masked1 = PETSC_NULL,*masked2 = PETSC_NULL,rowcount,odcount;
2575dc231df0SBarry Smith   PetscInt       dcount,kmax,k,nzcount,tmp,mend;
257657b952d6SSatish Balay 
2577d64ed03dSBarry Smith   PetscFunctionBegin;
257877925062SSatish Balay   ierr = PetscOptionsBegin(comm,PETSC_NULL,"Options for loading MPIBAIJ matrix 2","Mat");CHKERRQ(ierr);
25798c07d4e3SBarry Smith     ierr = PetscOptionsInt("-matload_block_size","Set the blocksize used to store the matrix","MatLoad",bs,&bs,PETSC_NULL);CHKERRQ(ierr);
25808c07d4e3SBarry Smith   ierr = PetscOptionsEnd();CHKERRQ(ierr);
258157b952d6SSatish Balay 
2582d132466eSBarry Smith   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
2583d132466eSBarry Smith   ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr);
258457b952d6SSatish Balay   if (!rank) {
2585b0a32e0cSBarry Smith     ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr);
2586e5638eb3SBarry Smith     ierr = PetscBinaryRead(fd,(char *)header,4,PETSC_INT);CHKERRQ(ierr);
2587552e946dSBarry Smith     if (header[0] != MAT_FILE_COOKIE) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"not matrix object");
25886c5fab8fSBarry Smith   }
2589d64ed03dSBarry Smith 
2590b24ad042SBarry Smith   ierr = MPI_Bcast(header+1,3,MPIU_INT,0,comm);CHKERRQ(ierr);
259157b952d6SSatish Balay   M = header[1]; N = header[2];
259257b952d6SSatish Balay 
259329bbc08cSBarry Smith   if (M != N) SETERRQ(PETSC_ERR_SUP,"Can only do square matrices");
259457b952d6SSatish Balay 
259557b952d6SSatish Balay   /*
259657b952d6SSatish Balay      This code adds extra rows to make sure the number of rows is
259757b952d6SSatish Balay      divisible by the blocksize
259857b952d6SSatish Balay   */
259957b952d6SSatish Balay   Mbs        = M/bs;
2600dc231df0SBarry Smith   extra_rows = bs - M + bs*Mbs;
260157b952d6SSatish Balay   if (extra_rows == bs) extra_rows = 0;
260257b952d6SSatish Balay   else                  Mbs++;
260357b952d6SSatish Balay   if (extra_rows && !rank) {
26041e2582c4SBarry Smith     ierr = PetscInfo(viewer,"Padding loaded matrix to match blocksize\n");CHKERRQ(ierr);
260557b952d6SSatish Balay   }
2606537820f0SBarry Smith 
260757b952d6SSatish Balay   /* determine ownership of all rows */
260857b952d6SSatish Balay   mbs        = Mbs/size + ((Mbs % size) > rank);
260957b952d6SSatish Balay   m          = mbs*bs;
2610dc231df0SBarry Smith   ierr       = PetscMalloc2(size+1,PetscInt,&rowners,size+1,PetscInt,&browners);CHKERRQ(ierr);
2611b24ad042SBarry Smith   ierr       = MPI_Allgather(&mbs,1,MPIU_INT,rowners+1,1,MPIU_INT,comm);CHKERRQ(ierr);
2612167e7480SBarry Smith 
2613167e7480SBarry Smith   /* process 0 needs enough room for process with most rows */
2614167e7480SBarry Smith   if (!rank) {
2615167e7480SBarry Smith     mmax = rowners[1];
2616167e7480SBarry Smith     for (i=2; i<size; i++) {
2617167e7480SBarry Smith       mmax = PetscMax(mmax,rowners[i]);
2618167e7480SBarry Smith     }
2619ca02efcfSSatish Balay     mmax*=bs;
2620167e7480SBarry Smith   } else mmax = m;
2621167e7480SBarry Smith 
262257b952d6SSatish Balay   rowners[0] = 0;
2623cee3aa6bSSatish Balay   for (i=2; i<=size; i++)  rowners[i] += rowners[i-1];
2624cee3aa6bSSatish Balay   for (i=0; i<=size;  i++) browners[i] = rowners[i]*bs;
262557b952d6SSatish Balay   rstart = rowners[rank];
262657b952d6SSatish Balay   rend   = rowners[rank+1];
262757b952d6SSatish Balay 
262857b952d6SSatish Balay   /* distribute row lengths to all processors */
262919c38ff2SBarry Smith   ierr = PetscMalloc((mmax+1)*sizeof(PetscInt),&locrowlens);CHKERRQ(ierr);
263057b952d6SSatish Balay   if (!rank) {
2631dc231df0SBarry Smith     mend = m;
2632dc231df0SBarry Smith     if (size == 1) mend = mend - extra_rows;
2633dc231df0SBarry Smith     ierr = PetscBinaryRead(fd,locrowlens,mend,PETSC_INT);CHKERRQ(ierr);
2634dc231df0SBarry Smith     for (j=mend; j<m; j++) locrowlens[j] = 1;
2635dc231df0SBarry Smith     ierr = PetscMalloc(m*sizeof(PetscInt),&rowlengths);CHKERRQ(ierr);
2636b24ad042SBarry Smith     ierr = PetscMalloc(size*sizeof(PetscInt),&procsnz);CHKERRQ(ierr);
2637b24ad042SBarry Smith     ierr = PetscMemzero(procsnz,size*sizeof(PetscInt));CHKERRQ(ierr);
2638dc231df0SBarry Smith     for (j=0; j<m; j++) {
2639dc231df0SBarry Smith       procsnz[0] += locrowlens[j];
2640dc231df0SBarry Smith     }
2641dc231df0SBarry Smith     for (i=1; i<size; i++) {
2642dc231df0SBarry Smith       mend = browners[i+1] - browners[i];
2643dc231df0SBarry Smith       if (i == size-1) mend = mend - extra_rows;
2644dc231df0SBarry Smith       ierr = PetscBinaryRead(fd,rowlengths,mend,PETSC_INT);CHKERRQ(ierr);
2645dc231df0SBarry Smith       for (j=mend; j<browners[i+1] - browners[i]; j++) rowlengths[j] = 1;
2646dc231df0SBarry Smith       /* calculate the number of nonzeros on each processor */
2647dc231df0SBarry Smith       for (j=0; j<browners[i+1]-browners[i]; j++) {
264857b952d6SSatish Balay         procsnz[i] += rowlengths[j];
264957b952d6SSatish Balay       }
2650dc231df0SBarry Smith       ierr = MPI_Send(rowlengths,browners[i+1]-browners[i],MPIU_INT,i,tag,comm);CHKERRQ(ierr);
265157b952d6SSatish Balay     }
2652606d414cSSatish Balay     ierr = PetscFree(rowlengths);CHKERRQ(ierr);
2653dc231df0SBarry Smith   } else {
2654dc231df0SBarry Smith     ierr = MPI_Recv(locrowlens,m,MPIU_INT,0,tag,comm,&status);CHKERRQ(ierr);
2655dc231df0SBarry Smith   }
265657b952d6SSatish Balay 
2657dc231df0SBarry Smith   if (!rank) {
265857b952d6SSatish Balay     /* determine max buffer needed and allocate it */
26598a8e0b3aSBarry Smith     maxnz = procsnz[0];
2660cdc0ba36SBarry Smith     for (i=1; i<size; i++) {
266157b952d6SSatish Balay       maxnz = PetscMax(maxnz,procsnz[i]);
266257b952d6SSatish Balay     }
2663b24ad042SBarry Smith     ierr = PetscMalloc(maxnz*sizeof(PetscInt),&cols);CHKERRQ(ierr);
266457b952d6SSatish Balay 
266557b952d6SSatish Balay     /* read in my part of the matrix column indices  */
266657b952d6SSatish Balay     nz     = procsnz[0];
266719c38ff2SBarry Smith     ierr   = PetscMalloc((nz+1)*sizeof(PetscInt),&ibuf);CHKERRQ(ierr);
266857b952d6SSatish Balay     mycols = ibuf;
2669cee3aa6bSSatish Balay     if (size == 1)  nz -= extra_rows;
2670e5638eb3SBarry Smith     ierr = PetscBinaryRead(fd,mycols,nz,PETSC_INT);CHKERRQ(ierr);
2671cee3aa6bSSatish Balay     if (size == 1)  for (i=0; i< extra_rows; i++) { mycols[nz+i] = M+i; }
2672cee3aa6bSSatish Balay 
267357b952d6SSatish Balay     /* read in every ones (except the last) and ship off */
267457b952d6SSatish Balay     for (i=1; i<size-1; i++) {
267557b952d6SSatish Balay       nz   = procsnz[i];
2676e5638eb3SBarry Smith       ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr);
2677b24ad042SBarry Smith       ierr = MPI_Send(cols,nz,MPIU_INT,i,tag,comm);CHKERRQ(ierr);
267857b952d6SSatish Balay     }
267957b952d6SSatish Balay     /* read in the stuff for the last proc */
268057b952d6SSatish Balay     if (size != 1) {
268157b952d6SSatish Balay       nz   = procsnz[size-1] - extra_rows;  /* the extra rows are not on the disk */
2682e5638eb3SBarry Smith       ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr);
268357b952d6SSatish Balay       for (i=0; i<extra_rows; i++) cols[nz+i] = M+i;
2684b24ad042SBarry Smith       ierr = MPI_Send(cols,nz+extra_rows,MPIU_INT,size-1,tag,comm);CHKERRQ(ierr);
268557b952d6SSatish Balay     }
2686606d414cSSatish Balay     ierr = PetscFree(cols);CHKERRQ(ierr);
2687d64ed03dSBarry Smith   } else {
268857b952d6SSatish Balay     /* determine buffer space needed for message */
268957b952d6SSatish Balay     nz = 0;
269057b952d6SSatish Balay     for (i=0; i<m; i++) {
269157b952d6SSatish Balay       nz += locrowlens[i];
269257b952d6SSatish Balay     }
269319c38ff2SBarry Smith     ierr   = PetscMalloc((nz+1)*sizeof(PetscInt),&ibuf);CHKERRQ(ierr);
269457b952d6SSatish Balay     mycols = ibuf;
269557b952d6SSatish Balay     /* receive message of column indices*/
2696b24ad042SBarry Smith     ierr = MPI_Recv(mycols,nz,MPIU_INT,0,tag,comm,&status);CHKERRQ(ierr);
2697b24ad042SBarry Smith     ierr = MPI_Get_count(&status,MPIU_INT,&maxnz);CHKERRQ(ierr);
269829bbc08cSBarry Smith     if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file");
269957b952d6SSatish Balay   }
270057b952d6SSatish Balay 
270157b952d6SSatish Balay   /* loop over local rows, determining number of off diagonal entries */
2702dc231df0SBarry Smith   ierr     = PetscMalloc2(rend-rstart,PetscInt,&dlens,rend-rstart,PetscInt,&odlens);CHKERRQ(ierr);
2703dc231df0SBarry Smith   ierr     = PetscMalloc3(Mbs,PetscInt,&mask,Mbs,PetscInt,&masked1,Mbs,PetscInt,&masked2);CHKERRQ(ierr);
2704dc231df0SBarry Smith   ierr     = PetscMemzero(mask,Mbs*sizeof(PetscInt));CHKERRQ(ierr);
2705dc231df0SBarry Smith   ierr     = PetscMemzero(masked1,Mbs*sizeof(PetscInt));CHKERRQ(ierr);
2706dc231df0SBarry Smith   ierr     = PetscMemzero(masked2,Mbs*sizeof(PetscInt));CHKERRQ(ierr);
270757b952d6SSatish Balay   rowcount = 0; nzcount = 0;
270857b952d6SSatish Balay   for (i=0; i<mbs; i++) {
270957b952d6SSatish Balay     dcount  = 0;
271057b952d6SSatish Balay     odcount = 0;
271157b952d6SSatish Balay     for (j=0; j<bs; j++) {
271257b952d6SSatish Balay       kmax = locrowlens[rowcount];
271357b952d6SSatish Balay       for (k=0; k<kmax; k++) {
271457b952d6SSatish Balay         tmp = mycols[nzcount++]/bs;
271557b952d6SSatish Balay         if (!mask[tmp]) {
271657b952d6SSatish Balay           mask[tmp] = 1;
271757b952d6SSatish Balay           if (tmp < rstart || tmp >= rend) masked2[odcount++] = tmp;
271857b952d6SSatish Balay           else masked1[dcount++] = tmp;
271957b952d6SSatish Balay         }
272057b952d6SSatish Balay       }
272157b952d6SSatish Balay       rowcount++;
272257b952d6SSatish Balay     }
2723cee3aa6bSSatish Balay 
272457b952d6SSatish Balay     dlens[i]  = dcount;
272557b952d6SSatish Balay     odlens[i] = odcount;
2726cee3aa6bSSatish Balay 
272757b952d6SSatish Balay     /* zero out the mask elements we set */
272857b952d6SSatish Balay     for (j=0; j<dcount; j++) mask[masked1[j]] = 0;
272957b952d6SSatish Balay     for (j=0; j<odcount; j++) mask[masked2[j]] = 0;
273057b952d6SSatish Balay   }
2731cee3aa6bSSatish Balay 
273257b952d6SSatish Balay   /* create our matrix */
2733f69a0ea3SMatthew Knepley   ierr = MatCreate(comm,&A);CHKERRQ(ierr);
2734f69a0ea3SMatthew Knepley   ierr = MatSetSizes(A,m,m,M+extra_rows,N+extra_rows);CHKERRQ(ierr);
273578ae41b4SKris Buschelman   ierr = MatSetType(A,type);CHKERRQ(ierr)
273678ae41b4SKris Buschelman   ierr = MatMPIBAIJSetPreallocation(A,bs,0,dlens,0,odlens);CHKERRQ(ierr);
273778ae41b4SKris Buschelman 
273857b952d6SSatish Balay   if (!rank) {
273919c38ff2SBarry Smith     ierr = PetscMalloc((maxnz+1)*sizeof(PetscScalar),&buf);CHKERRQ(ierr);
274057b952d6SSatish Balay     /* read in my part of the matrix numerical values  */
274157b952d6SSatish Balay     nz = procsnz[0];
274257b952d6SSatish Balay     vals = buf;
2743cee3aa6bSSatish Balay     mycols = ibuf;
2744cee3aa6bSSatish Balay     if (size == 1)  nz -= extra_rows;
2745e5638eb3SBarry Smith     ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
2746cee3aa6bSSatish Balay     if (size == 1)  for (i=0; i< extra_rows; i++) { vals[nz+i] = 1.0; }
2747537820f0SBarry Smith 
274857b952d6SSatish Balay     /* insert into matrix */
274957b952d6SSatish Balay     jj      = rstart*bs;
275057b952d6SSatish Balay     for (i=0; i<m; i++) {
2751dc231df0SBarry Smith       ierr = MatSetValues_MPIBAIJ(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr);
275257b952d6SSatish Balay       mycols += locrowlens[i];
275357b952d6SSatish Balay       vals   += locrowlens[i];
275457b952d6SSatish Balay       jj++;
275557b952d6SSatish Balay     }
275657b952d6SSatish Balay     /* read in other processors (except the last one) and ship out */
275757b952d6SSatish Balay     for (i=1; i<size-1; i++) {
275857b952d6SSatish Balay       nz   = procsnz[i];
275957b952d6SSatish Balay       vals = buf;
2760e5638eb3SBarry Smith       ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
27617adad957SLisandro Dalcin       ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,((PetscObject)A)->tag,comm);CHKERRQ(ierr);
276257b952d6SSatish Balay     }
276357b952d6SSatish Balay     /* the last proc */
276457b952d6SSatish Balay     if (size != 1){
276557b952d6SSatish Balay       nz   = procsnz[i] - extra_rows;
2766cee3aa6bSSatish Balay       vals = buf;
2767e5638eb3SBarry Smith       ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
276857b952d6SSatish Balay       for (i=0; i<extra_rows; i++) vals[nz+i] = 1.0;
27697adad957SLisandro Dalcin       ierr = MPI_Send(vals,nz+extra_rows,MPIU_SCALAR,size-1,((PetscObject)A)->tag,comm);CHKERRQ(ierr);
277057b952d6SSatish Balay     }
2771606d414cSSatish Balay     ierr = PetscFree(procsnz);CHKERRQ(ierr);
2772d64ed03dSBarry Smith   } else {
277357b952d6SSatish Balay     /* receive numeric values */
277419c38ff2SBarry Smith     ierr = PetscMalloc((nz+1)*sizeof(PetscScalar),&buf);CHKERRQ(ierr);
277557b952d6SSatish Balay 
277657b952d6SSatish Balay     /* receive message of values*/
277757b952d6SSatish Balay     vals   = buf;
2778cee3aa6bSSatish Balay     mycols = ibuf;
27797adad957SLisandro Dalcin     ierr   = MPI_Recv(vals,nz,MPIU_SCALAR,0,((PetscObject)A)->tag,comm,&status);CHKERRQ(ierr);
2780ca161407SBarry Smith     ierr   = MPI_Get_count(&status,MPIU_SCALAR,&maxnz);CHKERRQ(ierr);
278129bbc08cSBarry Smith     if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file");
278257b952d6SSatish Balay 
278357b952d6SSatish Balay     /* insert into matrix */
278457b952d6SSatish Balay     jj      = rstart*bs;
2785cee3aa6bSSatish Balay     for (i=0; i<m; i++) {
2786dc231df0SBarry Smith       ierr    = MatSetValues_MPIBAIJ(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr);
278757b952d6SSatish Balay       mycols += locrowlens[i];
278857b952d6SSatish Balay       vals   += locrowlens[i];
278957b952d6SSatish Balay       jj++;
279057b952d6SSatish Balay     }
279157b952d6SSatish Balay   }
2792606d414cSSatish Balay   ierr = PetscFree(locrowlens);CHKERRQ(ierr);
2793606d414cSSatish Balay   ierr = PetscFree(buf);CHKERRQ(ierr);
2794606d414cSSatish Balay   ierr = PetscFree(ibuf);CHKERRQ(ierr);
2795dc231df0SBarry Smith   ierr = PetscFree2(rowners,browners);CHKERRQ(ierr);
2796dc231df0SBarry Smith   ierr = PetscFree2(dlens,odlens);CHKERRQ(ierr);
2797dc231df0SBarry Smith   ierr = PetscFree3(mask,masked1,masked2);CHKERRQ(ierr);
27986d4a8577SBarry Smith   ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
27996d4a8577SBarry Smith   ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
280078ae41b4SKris Buschelman 
280178ae41b4SKris Buschelman   *newmat = A;
28023a40ed3dSBarry Smith   PetscFunctionReturn(0);
280357b952d6SSatish Balay }
280457b952d6SSatish Balay 
28054a2ae208SSatish Balay #undef __FUNCT__
28064a2ae208SSatish Balay #define __FUNCT__ "MatMPIBAIJSetHashTableFactor"
2807133cdb44SSatish Balay /*@
2808133cdb44SSatish Balay    MatMPIBAIJSetHashTableFactor - Sets the factor required to compute the size of the HashTable.
2809133cdb44SSatish Balay 
2810133cdb44SSatish Balay    Input Parameters:
2811133cdb44SSatish Balay .  mat  - the matrix
2812133cdb44SSatish Balay .  fact - factor
2813133cdb44SSatish Balay 
2814fee21e36SBarry Smith    Collective on Mat
2815fee21e36SBarry Smith 
28168c890885SBarry Smith    Level: advanced
28178c890885SBarry Smith 
2818133cdb44SSatish Balay   Notes:
28198c07d4e3SBarry Smith    This can also be set by the command line option: -mat_use_hash_table <fact>
2820133cdb44SSatish Balay 
2821133cdb44SSatish Balay .keywords: matrix, hashtable, factor, HT
2822133cdb44SSatish Balay 
2823133cdb44SSatish Balay .seealso: MatSetOption()
2824133cdb44SSatish Balay @*/
2825be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPIBAIJSetHashTableFactor(Mat mat,PetscReal fact)
2826133cdb44SSatish Balay {
2827dfbe8321SBarry Smith   PetscErrorCode ierr,(*f)(Mat,PetscReal);
28285bf65638SKris Buschelman 
28295bf65638SKris Buschelman   PetscFunctionBegin;
28305bf65638SKris Buschelman   ierr = PetscObjectQueryFunction((PetscObject)mat,"MatSetHashTableFactor_C",(void (**)(void))&f);CHKERRQ(ierr);
28315bf65638SKris Buschelman   if (f) {
28325bf65638SKris Buschelman     ierr = (*f)(mat,fact);CHKERRQ(ierr);
28335bf65638SKris Buschelman   }
28345bf65638SKris Buschelman   PetscFunctionReturn(0);
28355bf65638SKris Buschelman }
28365bf65638SKris Buschelman 
2837be1d678aSKris Buschelman EXTERN_C_BEGIN
28385bf65638SKris Buschelman #undef __FUNCT__
28395bf65638SKris Buschelman #define __FUNCT__ "MatSetHashTableFactor_MPIBAIJ"
2840be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatSetHashTableFactor_MPIBAIJ(Mat mat,PetscReal fact)
28415bf65638SKris Buschelman {
284225fdafccSSatish Balay   Mat_MPIBAIJ *baij;
2843133cdb44SSatish Balay 
2844133cdb44SSatish Balay   PetscFunctionBegin;
2845133cdb44SSatish Balay   baij = (Mat_MPIBAIJ*)mat->data;
2846133cdb44SSatish Balay   baij->ht_fact = fact;
2847133cdb44SSatish Balay   PetscFunctionReturn(0);
2848133cdb44SSatish Balay }
2849be1d678aSKris Buschelman EXTERN_C_END
2850f2a5309cSSatish Balay 
28514a2ae208SSatish Balay #undef __FUNCT__
28524a2ae208SSatish Balay #define __FUNCT__ "MatMPIBAIJGetSeqBAIJ"
2853be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPIBAIJGetSeqBAIJ(Mat A,Mat *Ad,Mat *Ao,PetscInt *colmap[])
2854f2a5309cSSatish Balay {
2855f2a5309cSSatish Balay   Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data;
2856f2a5309cSSatish Balay   PetscFunctionBegin;
2857f2a5309cSSatish Balay   *Ad     = a->A;
2858f2a5309cSSatish Balay   *Ao     = a->B;
2859195d93cdSBarry Smith   *colmap = a->garray;
2860f2a5309cSSatish Balay   PetscFunctionReturn(0);
2861f2a5309cSSatish Balay }
286285535b8eSBarry Smith 
286385535b8eSBarry Smith /*
286485535b8eSBarry Smith     Special version for direct calls from Fortran (to eliminate two function call overheads
286585535b8eSBarry Smith */
286685535b8eSBarry Smith #if defined(PETSC_HAVE_FORTRAN_CAPS)
286785535b8eSBarry Smith #define matmpibaijsetvaluesblocked_ MATMPIBAIJSETVALUESBLOCKED
286885535b8eSBarry Smith #elif !defined(PETSC_HAVE_FORTRAN_UNDERSCORE)
286985535b8eSBarry Smith #define matmpibaijsetvaluesblocked_ matmpibaijsetvaluesblocked
287085535b8eSBarry Smith #endif
287185535b8eSBarry Smith 
287285535b8eSBarry Smith #undef __FUNCT__
287385535b8eSBarry Smith #define __FUNCT__ "matmpibiajsetvaluesblocked"
287485535b8eSBarry Smith /*@C
287585535b8eSBarry Smith   MatMPIBAIJSetValuesBlocked - Direct Fortran call to replace call to MatSetValuesBlocked()
287685535b8eSBarry Smith 
287785535b8eSBarry Smith   Collective on Mat
287885535b8eSBarry Smith 
287985535b8eSBarry Smith   Input Parameters:
288085535b8eSBarry Smith + mat - the matrix
288185535b8eSBarry Smith . min - number of input rows
288285535b8eSBarry Smith . im - input rows
288385535b8eSBarry Smith . nin - number of input columns
288485535b8eSBarry Smith . in - input columns
288585535b8eSBarry Smith . v - numerical values input
288685535b8eSBarry Smith - addvin - INSERT_VALUES or ADD_VALUES
288785535b8eSBarry Smith 
288885535b8eSBarry Smith   Notes: This has a complete copy of MatSetValuesBlocked_MPIBAIJ() which is terrible code un-reuse.
288985535b8eSBarry Smith 
289085535b8eSBarry Smith   Level: advanced
289185535b8eSBarry Smith 
289285535b8eSBarry Smith .seealso:   MatSetValuesBlocked()
289385535b8eSBarry Smith @*/
289485535b8eSBarry Smith PetscErrorCode matmpibaijsetvaluesblocked_(Mat *matin,PetscInt *min,const PetscInt im[],PetscInt *nin,const PetscInt in[],const MatScalar v[],InsertMode *addvin)
289585535b8eSBarry Smith {
289685535b8eSBarry Smith   /* convert input arguments to C version */
289785535b8eSBarry Smith   Mat             mat = *matin;
289885535b8eSBarry Smith   PetscInt        m = *min, n = *nin;
289985535b8eSBarry Smith   InsertMode      addv = *addvin;
290085535b8eSBarry Smith 
290185535b8eSBarry Smith   Mat_MPIBAIJ     *baij = (Mat_MPIBAIJ*)mat->data;
290285535b8eSBarry Smith   const MatScalar *value;
290385535b8eSBarry Smith   MatScalar       *barray=baij->barray;
290485535b8eSBarry Smith   PetscTruth      roworiented = baij->roworiented;
290585535b8eSBarry Smith   PetscErrorCode  ierr;
290685535b8eSBarry Smith   PetscInt        i,j,ii,jj,row,col,rstart=baij->rstartbs;
290785535b8eSBarry Smith   PetscInt        rend=baij->rendbs,cstart=baij->cstartbs,stepval;
290885535b8eSBarry Smith   PetscInt        cend=baij->cendbs,bs=mat->rmap.bs,bs2=baij->bs2;
290985535b8eSBarry Smith 
291085535b8eSBarry Smith   PetscFunctionBegin;
291185535b8eSBarry Smith   /* tasks normally handled by MatSetValuesBlocked() */
291285535b8eSBarry Smith   if (mat->insertmode == NOT_SET_VALUES) {
291385535b8eSBarry Smith     mat->insertmode = addv;
291485535b8eSBarry Smith   }
291585535b8eSBarry Smith #if defined(PETSC_USE_DEBUG)
291685535b8eSBarry Smith   else if (mat->insertmode != addv) {
291785535b8eSBarry Smith     SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Cannot mix add values and insert values");
291885535b8eSBarry Smith   }
291985535b8eSBarry Smith   if (mat->factor) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Not for factored matrix");
292085535b8eSBarry Smith #endif
292185535b8eSBarry Smith   if (mat->assembled) {
292285535b8eSBarry Smith     mat->was_assembled = PETSC_TRUE;
292385535b8eSBarry Smith     mat->assembled     = PETSC_FALSE;
292485535b8eSBarry Smith   }
292585535b8eSBarry Smith   ierr = PetscLogEventBegin(MAT_SetValues,mat,0,0,0);CHKERRQ(ierr);
292685535b8eSBarry Smith 
292785535b8eSBarry Smith 
292885535b8eSBarry Smith   if(!barray) {
292985535b8eSBarry Smith     ierr         = PetscMalloc(bs2*sizeof(MatScalar),&barray);CHKERRQ(ierr);
293085535b8eSBarry Smith     baij->barray = barray;
293185535b8eSBarry Smith   }
293285535b8eSBarry Smith 
293385535b8eSBarry Smith   if (roworiented) {
293485535b8eSBarry Smith     stepval = (n-1)*bs;
293585535b8eSBarry Smith   } else {
293685535b8eSBarry Smith     stepval = (m-1)*bs;
293785535b8eSBarry Smith   }
293885535b8eSBarry Smith   for (i=0; i<m; i++) {
293985535b8eSBarry Smith     if (im[i] < 0) continue;
294085535b8eSBarry Smith #if defined(PETSC_USE_DEBUG)
294185535b8eSBarry Smith     if (im[i] >= baij->Mbs) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large, row %D max %D",im[i],baij->Mbs-1);
294285535b8eSBarry Smith #endif
294385535b8eSBarry Smith     if (im[i] >= rstart && im[i] < rend) {
294485535b8eSBarry Smith       row = im[i] - rstart;
294585535b8eSBarry Smith       for (j=0; j<n; j++) {
294685535b8eSBarry Smith         /* If NumCol = 1 then a copy is not required */
294785535b8eSBarry Smith         if ((roworiented) && (n == 1)) {
294885535b8eSBarry Smith           barray = (MatScalar*)v + i*bs2;
294985535b8eSBarry Smith         } else if((!roworiented) && (m == 1)) {
295085535b8eSBarry Smith           barray = (MatScalar*)v + j*bs2;
295185535b8eSBarry Smith         } else { /* Here a copy is required */
295285535b8eSBarry Smith           if (roworiented) {
295385535b8eSBarry Smith             value = v + i*(stepval+bs)*bs + j*bs;
295485535b8eSBarry Smith           } else {
295585535b8eSBarry Smith             value = v + j*(stepval+bs)*bs + i*bs;
295685535b8eSBarry Smith           }
295785535b8eSBarry Smith           for (ii=0; ii<bs; ii++,value+=stepval) {
295885535b8eSBarry Smith             for (jj=0; jj<bs; jj++) {
295985535b8eSBarry Smith               *barray++  = *value++;
296085535b8eSBarry Smith             }
296185535b8eSBarry Smith           }
296285535b8eSBarry Smith           barray -=bs2;
296385535b8eSBarry Smith         }
296485535b8eSBarry Smith 
296585535b8eSBarry Smith         if (in[j] >= cstart && in[j] < cend){
296685535b8eSBarry Smith           col  = in[j] - cstart;
2967*97e5c40aSBarry Smith           ierr = MatSetValuesBlocked_SeqBAIJ(baij->A,1,&row,1,&col,barray,addv);CHKERRQ(ierr);
296885535b8eSBarry Smith         }
296985535b8eSBarry Smith         else if (in[j] < 0) continue;
297085535b8eSBarry Smith #if defined(PETSC_USE_DEBUG)
297185535b8eSBarry Smith         else if (in[j] >= baij->Nbs) {SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large, col %D max %D",in[j],baij->Nbs-1);}
297285535b8eSBarry Smith #endif
297385535b8eSBarry Smith         else {
297485535b8eSBarry Smith           if (mat->was_assembled) {
297585535b8eSBarry Smith             if (!baij->colmap) {
297685535b8eSBarry Smith               ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
297785535b8eSBarry Smith             }
297885535b8eSBarry Smith 
297985535b8eSBarry Smith #if defined(PETSC_USE_DEBUG)
298085535b8eSBarry Smith #if defined (PETSC_USE_CTABLE)
298185535b8eSBarry Smith             { PetscInt data;
298285535b8eSBarry Smith               ierr = PetscTableFind(baij->colmap,in[j]+1,&data);CHKERRQ(ierr);
298385535b8eSBarry Smith               if ((data - 1) % bs) SETERRQ(PETSC_ERR_PLIB,"Incorrect colmap");
298485535b8eSBarry Smith             }
298585535b8eSBarry Smith #else
298685535b8eSBarry Smith             if ((baij->colmap[in[j]] - 1) % bs) SETERRQ(PETSC_ERR_PLIB,"Incorrect colmap");
298785535b8eSBarry Smith #endif
298885535b8eSBarry Smith #endif
298985535b8eSBarry Smith #if defined (PETSC_USE_CTABLE)
299085535b8eSBarry Smith 	    ierr = PetscTableFind(baij->colmap,in[j]+1,&col);CHKERRQ(ierr);
299185535b8eSBarry Smith             col  = (col - 1)/bs;
299285535b8eSBarry Smith #else
299385535b8eSBarry Smith             col = (baij->colmap[in[j]] - 1)/bs;
299485535b8eSBarry Smith #endif
299585535b8eSBarry Smith             if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) {
299685535b8eSBarry Smith               ierr = DisAssemble_MPIBAIJ(mat);CHKERRQ(ierr);
299785535b8eSBarry Smith               col =  in[j];
299885535b8eSBarry Smith             }
299985535b8eSBarry Smith           }
300085535b8eSBarry Smith           else col = in[j];
3001*97e5c40aSBarry Smith           ierr = MatSetValuesBlocked_SeqBAIJ(baij->B,1,&row,1,&col,barray,addv);CHKERRQ(ierr);
300285535b8eSBarry Smith         }
300385535b8eSBarry Smith       }
300485535b8eSBarry Smith     } else {
300585535b8eSBarry Smith       if (!baij->donotstash) {
300685535b8eSBarry Smith         if (roworiented) {
300785535b8eSBarry Smith           ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
300885535b8eSBarry Smith         } else {
300985535b8eSBarry Smith           ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
301085535b8eSBarry Smith         }
301185535b8eSBarry Smith       }
301285535b8eSBarry Smith     }
301385535b8eSBarry Smith   }
301485535b8eSBarry Smith 
301585535b8eSBarry Smith   /* task normally handled by MatSetValuesBlocked() */
301685535b8eSBarry Smith   ierr = PetscLogEventEnd(MAT_SetValues,mat,0,0,0);CHKERRQ(ierr);
301785535b8eSBarry Smith   PetscFunctionReturn(0);
301885535b8eSBarry Smith }
3019