1bba1ac68SSatish Balay /*$Id: mpibaij.c,v 1.234 2001/09/25 22:56:49 balay Exp $*/ 279bdfe76SSatish Balay 3e090d566SSatish Balay #include "src/mat/impls/baij/mpi/mpibaij.h" /*I "petscmat.h" I*/ 4c16cb8f2SBarry Smith #include "src/vec/vecimpl.h" 579bdfe76SSatish Balay 6ca44d042SBarry Smith EXTERN int MatSetUpMultiply_MPIBAIJ(Mat); 7ca44d042SBarry Smith EXTERN int DisAssemble_MPIBAIJ(Mat); 8ca44d042SBarry Smith EXTERN int MatIncreaseOverlap_MPIBAIJ(Mat,int,IS *,int); 9ca44d042SBarry Smith EXTERN int MatGetSubMatrices_MPIBAIJ(Mat,int,IS *,IS *,MatReuse,Mat **); 1087828ca2SBarry Smith EXTERN int MatGetValues_SeqBAIJ(Mat,int,int *,int,int *,PetscScalar *); 1187828ca2SBarry Smith EXTERN int MatSetValues_SeqBAIJ(Mat,int,int *,int,int *,PetscScalar *,InsertMode); 1287828ca2SBarry Smith EXTERN int MatSetValuesBlocked_SeqBAIJ(Mat,int,int*,int,int*,PetscScalar*,InsertMode); 1387828ca2SBarry Smith EXTERN int MatGetRow_SeqBAIJ(Mat,int,int*,int**,PetscScalar**); 1487828ca2SBarry Smith EXTERN int MatRestoreRow_SeqBAIJ(Mat,int,int*,int**,PetscScalar**); 15ca44d042SBarry Smith EXTERN int MatPrintHelp_SeqBAIJ(Mat); 1687828ca2SBarry Smith EXTERN int MatZeroRows_SeqBAIJ(Mat,IS,PetscScalar*); 1793fea6afSBarry Smith 1893fea6afSBarry Smith /* UGLY, ugly, ugly 1987828ca2SBarry Smith When MatScalar == PetscScalar the function MatSetValuesBlocked_MPIBAIJ_MatScalar() does 2093fea6afSBarry Smith not exist. Otherwise ..._MatScalar() takes matrix elements in single precision and 2193fea6afSBarry Smith inserts them into the single precision data structure. The function MatSetValuesBlocked_MPIBAIJ() 2293fea6afSBarry Smith converts the entries into single precision and then calls ..._MatScalar() to put them 2393fea6afSBarry Smith into the single precision data structures. 2493fea6afSBarry Smith */ 2593fea6afSBarry Smith #if defined(PETSC_USE_MAT_SINGLE) 26ca44d042SBarry Smith EXTERN int MatSetValuesBlocked_SeqBAIJ_MatScalar(Mat,int,int*,int,int*,MatScalar*,InsertMode); 27ca44d042SBarry Smith EXTERN int MatSetValues_MPIBAIJ_MatScalar(Mat,int,int*,int,int*,MatScalar*,InsertMode); 28ca44d042SBarry Smith EXTERN int MatSetValuesBlocked_MPIBAIJ_MatScalar(Mat,int,int*,int,int*,MatScalar*,InsertMode); 29ca44d042SBarry Smith EXTERN int MatSetValues_MPIBAIJ_HT_MatScalar(Mat,int,int*,int,int*,MatScalar*,InsertMode); 30ca44d042SBarry Smith EXTERN int MatSetValuesBlocked_MPIBAIJ_HT_MatScalar(Mat,int,int*,int,int*,MatScalar*,InsertMode); 3193fea6afSBarry Smith #else 326fa18ffdSBarry Smith #define MatSetValuesBlocked_SeqBAIJ_MatScalar MatSetValuesBlocked_SeqBAIJ 3393fea6afSBarry Smith #define MatSetValues_MPIBAIJ_MatScalar MatSetValues_MPIBAIJ 3493fea6afSBarry Smith #define MatSetValuesBlocked_MPIBAIJ_MatScalar MatSetValuesBlocked_MPIBAIJ 356fa18ffdSBarry Smith #define MatSetValues_MPIBAIJ_HT_MatScalar MatSetValues_MPIBAIJ_HT 366fa18ffdSBarry Smith #define MatSetValuesBlocked_MPIBAIJ_HT_MatScalar MatSetValuesBlocked_MPIBAIJ_HT 3793fea6afSBarry Smith #endif 383b2fbd54SBarry Smith 394a2ae208SSatish Balay #undef __FUNCT__ 404a2ae208SSatish Balay #define __FUNCT__ "MatGetRowMax_MPIBAIJ" 417843d17aSBarry Smith int MatGetRowMax_MPIBAIJ(Mat A,Vec v) 427843d17aSBarry Smith { 437843d17aSBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 447843d17aSBarry Smith int ierr,i; 4587828ca2SBarry Smith PetscScalar *va,*vb; 467843d17aSBarry Smith Vec vtmp; 477843d17aSBarry Smith 487843d17aSBarry Smith PetscFunctionBegin; 497843d17aSBarry Smith 507843d17aSBarry Smith ierr = MatGetRowMax(a->A,v);CHKERRQ(ierr); 51273d9f13SBarry Smith ierr = VecGetArray(v,&va);CHKERRQ(ierr); 527843d17aSBarry Smith 53ac355199SBarry Smith ierr = VecCreateSeq(PETSC_COMM_SELF,A->m,&vtmp);CHKERRQ(ierr); 547843d17aSBarry Smith ierr = MatGetRowMax(a->B,vtmp);CHKERRQ(ierr); 55273d9f13SBarry Smith ierr = VecGetArray(vtmp,&vb);CHKERRQ(ierr); 567843d17aSBarry Smith 57273d9f13SBarry Smith for (i=0; i<A->m; i++){ 58273d9f13SBarry Smith if (PetscAbsScalar(va[i]) < PetscAbsScalar(vb[i])) va[i] = vb[i]; 597843d17aSBarry Smith } 607843d17aSBarry Smith 617843d17aSBarry Smith ierr = VecRestoreArray(v,&va);CHKERRQ(ierr); 627843d17aSBarry Smith ierr = VecRestoreArray(vtmp,&vb);CHKERRQ(ierr); 63ac355199SBarry Smith ierr = VecDestroy(vtmp);CHKERRQ(ierr); 647843d17aSBarry Smith 657843d17aSBarry Smith PetscFunctionReturn(0); 667843d17aSBarry Smith } 677843d17aSBarry Smith 687fc3c18eSBarry Smith EXTERN_C_BEGIN 694a2ae208SSatish Balay #undef __FUNCT__ 704a2ae208SSatish Balay #define __FUNCT__ "MatStoreValues_MPIBAIJ" 717fc3c18eSBarry Smith int MatStoreValues_MPIBAIJ(Mat mat) 727fc3c18eSBarry Smith { 737fc3c18eSBarry Smith Mat_MPIBAIJ *aij = (Mat_MPIBAIJ *)mat->data; 747fc3c18eSBarry Smith int ierr; 757fc3c18eSBarry Smith 767fc3c18eSBarry Smith PetscFunctionBegin; 777fc3c18eSBarry Smith ierr = MatStoreValues(aij->A);CHKERRQ(ierr); 787fc3c18eSBarry Smith ierr = MatStoreValues(aij->B);CHKERRQ(ierr); 797fc3c18eSBarry Smith PetscFunctionReturn(0); 807fc3c18eSBarry Smith } 817fc3c18eSBarry Smith EXTERN_C_END 827fc3c18eSBarry Smith 837fc3c18eSBarry Smith EXTERN_C_BEGIN 844a2ae208SSatish Balay #undef __FUNCT__ 854a2ae208SSatish Balay #define __FUNCT__ "MatRetrieveValues_MPIBAIJ" 867fc3c18eSBarry Smith int MatRetrieveValues_MPIBAIJ(Mat mat) 877fc3c18eSBarry Smith { 887fc3c18eSBarry Smith Mat_MPIBAIJ *aij = (Mat_MPIBAIJ *)mat->data; 897fc3c18eSBarry Smith int ierr; 907fc3c18eSBarry Smith 917fc3c18eSBarry Smith PetscFunctionBegin; 927fc3c18eSBarry Smith ierr = MatRetrieveValues(aij->A);CHKERRQ(ierr); 937fc3c18eSBarry Smith ierr = MatRetrieveValues(aij->B);CHKERRQ(ierr); 947fc3c18eSBarry Smith PetscFunctionReturn(0); 957fc3c18eSBarry Smith } 967fc3c18eSBarry Smith EXTERN_C_END 977fc3c18eSBarry Smith 98537820f0SBarry Smith /* 99537820f0SBarry Smith Local utility routine that creates a mapping from the global column 10057b952d6SSatish Balay number to the local number in the off-diagonal part of the local 10157b952d6SSatish Balay storage of the matrix. This is done in a non scable way since the 10257b952d6SSatish Balay length of colmap equals the global matrix length. 10357b952d6SSatish Balay */ 1044a2ae208SSatish Balay #undef __FUNCT__ 1054a2ae208SSatish Balay #define __FUNCT__ "CreateColmap_MPIBAIJ_Private" 10657b952d6SSatish Balay static int CreateColmap_MPIBAIJ_Private(Mat mat) 10757b952d6SSatish Balay { 10857b952d6SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 10957b952d6SSatish Balay Mat_SeqBAIJ *B = (Mat_SeqBAIJ*)baij->B->data; 110dc2900e9SSatish Balay int nbs = B->nbs,i,bs=B->bs,ierr; 11157b952d6SSatish Balay 112d64ed03dSBarry Smith PetscFunctionBegin; 113aa482453SBarry Smith #if defined (PETSC_USE_CTABLE) 114f14a1c24SBarry Smith ierr = PetscTableCreate(baij->nbs,&baij->colmap);CHKERRQ(ierr); 11548e59246SSatish Balay for (i=0; i<nbs; i++){ 1160f5bd95cSBarry Smith ierr = PetscTableAdd(baij->colmap,baij->garray[i]+1,i*bs+1);CHKERRQ(ierr); 11748e59246SSatish Balay } 11848e59246SSatish Balay #else 11982502324SSatish Balay ierr = PetscMalloc((baij->Nbs+1)*sizeof(int),&baij->colmap);CHKERRQ(ierr); 120b0a32e0cSBarry Smith PetscLogObjectMemory(mat,baij->Nbs*sizeof(int)); 121549d3d68SSatish Balay ierr = PetscMemzero(baij->colmap,baij->Nbs*sizeof(int));CHKERRQ(ierr); 122928fc39bSSatish Balay for (i=0; i<nbs; i++) baij->colmap[baij->garray[i]] = i*bs+1; 12348e59246SSatish Balay #endif 1243a40ed3dSBarry Smith PetscFunctionReturn(0); 12557b952d6SSatish Balay } 12657b952d6SSatish Balay 12780c1aa95SSatish Balay #define CHUNKSIZE 10 12880c1aa95SSatish Balay 129f5e9677aSSatish Balay #define MatSetValues_SeqBAIJ_A_Private(row,col,value,addv) \ 13080c1aa95SSatish Balay { \ 13180c1aa95SSatish Balay \ 13280c1aa95SSatish Balay brow = row/bs; \ 13380c1aa95SSatish Balay rp = aj + ai[brow]; ap = aa + bs2*ai[brow]; \ 134ac7a638eSSatish Balay rmax = aimax[brow]; nrow = ailen[brow]; \ 13580c1aa95SSatish Balay bcol = col/bs; \ 13680c1aa95SSatish Balay ridx = row % bs; cidx = col % bs; \ 137ab26458aSBarry Smith low = 0; high = nrow; \ 138ab26458aSBarry Smith while (high-low > 3) { \ 139ab26458aSBarry Smith t = (low+high)/2; \ 140ab26458aSBarry Smith if (rp[t] > bcol) high = t; \ 141ab26458aSBarry Smith else low = t; \ 142ab26458aSBarry Smith } \ 143ab26458aSBarry Smith for (_i=low; _i<high; _i++) { \ 14480c1aa95SSatish Balay if (rp[_i] > bcol) break; \ 14580c1aa95SSatish Balay if (rp[_i] == bcol) { \ 14680c1aa95SSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 147eada6651SSatish Balay if (addv == ADD_VALUES) *bap += value; \ 148eada6651SSatish Balay else *bap = value; \ 149ac7a638eSSatish Balay goto a_noinsert; \ 15080c1aa95SSatish Balay } \ 15180c1aa95SSatish Balay } \ 15289280ab3SLois Curfman McInnes if (a->nonew == 1) goto a_noinsert; \ 15329bbc08cSBarry Smith else if (a->nonew == -1) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero into matrix"); \ 15480c1aa95SSatish Balay if (nrow >= rmax) { \ 15580c1aa95SSatish Balay /* there is no extra room in row, therefore enlarge */ \ 15680c1aa95SSatish Balay int new_nz = ai[a->mbs] + CHUNKSIZE,len,*new_i,*new_j; \ 1573eda8832SBarry Smith MatScalar *new_a; \ 15880c1aa95SSatish Balay \ 15929bbc08cSBarry Smith if (a->nonew == -2) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero in the matrix"); \ 16089280ab3SLois Curfman McInnes \ 16180c1aa95SSatish Balay /* malloc new storage space */ \ 1623eda8832SBarry Smith len = new_nz*(sizeof(int)+bs2*sizeof(MatScalar))+(a->mbs+1)*sizeof(int); \ 16382502324SSatish Balay ierr = PetscMalloc(len,&new_a);CHKERRQ(ierr); \ 16480c1aa95SSatish Balay new_j = (int*)(new_a + bs2*new_nz); \ 16580c1aa95SSatish Balay new_i = new_j + new_nz; \ 16680c1aa95SSatish Balay \ 16780c1aa95SSatish Balay /* copy over old data into new slots */ \ 16880c1aa95SSatish Balay for (ii=0; ii<brow+1; ii++) {new_i[ii] = ai[ii];} \ 16980c1aa95SSatish Balay for (ii=brow+1; ii<a->mbs+1; ii++) {new_i[ii] = ai[ii]+CHUNKSIZE;} \ 170549d3d68SSatish Balay ierr = PetscMemcpy(new_j,aj,(ai[brow]+nrow)*sizeof(int));CHKERRQ(ierr); \ 17180c1aa95SSatish Balay len = (new_nz - CHUNKSIZE - ai[brow] - nrow); \ 1723eda8832SBarry Smith ierr = PetscMemcpy(new_j+ai[brow]+nrow+CHUNKSIZE,aj+ai[brow]+nrow,len*sizeof(int));CHKERRQ(ierr); \ 1733eda8832SBarry Smith ierr = PetscMemcpy(new_a,aa,(ai[brow]+nrow)*bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 17487828ca2SBarry Smith ierr = PetscMemzero(new_a+bs2*(ai[brow]+nrow),bs2*CHUNKSIZE*sizeof(PetscScalar));CHKERRQ(ierr); \ 175549d3d68SSatish Balay ierr = PetscMemcpy(new_a+bs2*(ai[brow]+nrow+CHUNKSIZE), \ 1763eda8832SBarry Smith aa+bs2*(ai[brow]+nrow),bs2*len*sizeof(MatScalar));CHKERRQ(ierr); \ 17780c1aa95SSatish Balay /* free up old matrix storage */ \ 178606d414cSSatish Balay ierr = PetscFree(a->a);CHKERRQ(ierr); \ 179606d414cSSatish Balay if (!a->singlemalloc) { \ 180606d414cSSatish Balay ierr = PetscFree(a->i);CHKERRQ(ierr); \ 181606d414cSSatish Balay ierr = PetscFree(a->j);CHKERRQ(ierr);\ 182606d414cSSatish Balay } \ 18380c1aa95SSatish Balay aa = a->a = new_a; ai = a->i = new_i; aj = a->j = new_j; \ 1847c922b88SBarry Smith a->singlemalloc = PETSC_TRUE; \ 18580c1aa95SSatish Balay \ 18680c1aa95SSatish Balay rp = aj + ai[brow]; ap = aa + bs2*ai[brow]; \ 187ac7a638eSSatish Balay rmax = aimax[brow] = aimax[brow] + CHUNKSIZE; \ 188b0a32e0cSBarry Smith PetscLogObjectMemory(A,CHUNKSIZE*(sizeof(int) + bs2*sizeof(MatScalar))); \ 18980c1aa95SSatish Balay a->maxnz += bs2*CHUNKSIZE; \ 19080c1aa95SSatish Balay a->reallocs++; \ 19180c1aa95SSatish Balay a->nz++; \ 19280c1aa95SSatish Balay } \ 19380c1aa95SSatish Balay N = nrow++ - 1; \ 19480c1aa95SSatish Balay /* shift up all the later entries in this row */ \ 19580c1aa95SSatish Balay for (ii=N; ii>=_i; ii--) { \ 19680c1aa95SSatish Balay rp[ii+1] = rp[ii]; \ 1973eda8832SBarry Smith ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 19880c1aa95SSatish Balay } \ 1993eda8832SBarry Smith if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr); } \ 20080c1aa95SSatish Balay rp[_i] = bcol; \ 20180c1aa95SSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 202ac7a638eSSatish Balay a_noinsert:; \ 20380c1aa95SSatish Balay ailen[brow] = nrow; \ 20480c1aa95SSatish Balay } 20557b952d6SSatish Balay 206ac7a638eSSatish Balay #define MatSetValues_SeqBAIJ_B_Private(row,col,value,addv) \ 207ac7a638eSSatish Balay { \ 208ac7a638eSSatish Balay brow = row/bs; \ 209ac7a638eSSatish Balay rp = bj + bi[brow]; ap = ba + bs2*bi[brow]; \ 210ac7a638eSSatish Balay rmax = bimax[brow]; nrow = bilen[brow]; \ 211ac7a638eSSatish Balay bcol = col/bs; \ 212ac7a638eSSatish Balay ridx = row % bs; cidx = col % bs; \ 213ac7a638eSSatish Balay low = 0; high = nrow; \ 214ac7a638eSSatish Balay while (high-low > 3) { \ 215ac7a638eSSatish Balay t = (low+high)/2; \ 216ac7a638eSSatish Balay if (rp[t] > bcol) high = t; \ 217ac7a638eSSatish Balay else low = t; \ 218ac7a638eSSatish Balay } \ 219ac7a638eSSatish Balay for (_i=low; _i<high; _i++) { \ 220ac7a638eSSatish Balay if (rp[_i] > bcol) break; \ 221ac7a638eSSatish Balay if (rp[_i] == bcol) { \ 222ac7a638eSSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 223ac7a638eSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 224ac7a638eSSatish Balay else *bap = value; \ 225ac7a638eSSatish Balay goto b_noinsert; \ 226ac7a638eSSatish Balay } \ 227ac7a638eSSatish Balay } \ 22889280ab3SLois Curfman McInnes if (b->nonew == 1) goto b_noinsert; \ 22929bbc08cSBarry Smith else if (b->nonew == -1) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero into matrix"); \ 230ac7a638eSSatish Balay if (nrow >= rmax) { \ 231ac7a638eSSatish Balay /* there is no extra room in row, therefore enlarge */ \ 23274c639caSSatish Balay int new_nz = bi[b->mbs] + CHUNKSIZE,len,*new_i,*new_j; \ 2333eda8832SBarry Smith MatScalar *new_a; \ 234ac7a638eSSatish Balay \ 23529bbc08cSBarry Smith if (b->nonew == -2) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero in the matrix"); \ 23689280ab3SLois Curfman McInnes \ 237ac7a638eSSatish Balay /* malloc new storage space */ \ 2383eda8832SBarry Smith len = new_nz*(sizeof(int)+bs2*sizeof(MatScalar))+(b->mbs+1)*sizeof(int); \ 23982502324SSatish Balay ierr = PetscMalloc(len,&new_a);CHKERRQ(ierr); \ 240ac7a638eSSatish Balay new_j = (int*)(new_a + bs2*new_nz); \ 241ac7a638eSSatish Balay new_i = new_j + new_nz; \ 242ac7a638eSSatish Balay \ 243ac7a638eSSatish Balay /* copy over old data into new slots */ \ 244ac7a638eSSatish Balay for (ii=0; ii<brow+1; ii++) {new_i[ii] = bi[ii];} \ 24574c639caSSatish Balay for (ii=brow+1; ii<b->mbs+1; ii++) {new_i[ii] = bi[ii]+CHUNKSIZE;} \ 246549d3d68SSatish Balay ierr = PetscMemcpy(new_j,bj,(bi[brow]+nrow)*sizeof(int));CHKERRQ(ierr); \ 247ac7a638eSSatish Balay len = (new_nz - CHUNKSIZE - bi[brow] - nrow); \ 2483eda8832SBarry Smith ierr = PetscMemcpy(new_j+bi[brow]+nrow+CHUNKSIZE,bj+bi[brow]+nrow,len*sizeof(int));CHKERRQ(ierr); \ 2493eda8832SBarry Smith ierr = PetscMemcpy(new_a,ba,(bi[brow]+nrow)*bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 2503eda8832SBarry Smith ierr = PetscMemzero(new_a+bs2*(bi[brow]+nrow),bs2*CHUNKSIZE*sizeof(MatScalar));CHKERRQ(ierr); \ 251549d3d68SSatish Balay ierr = PetscMemcpy(new_a+bs2*(bi[brow]+nrow+CHUNKSIZE), \ 2523eda8832SBarry Smith ba+bs2*(bi[brow]+nrow),bs2*len*sizeof(MatScalar));CHKERRQ(ierr); \ 253ac7a638eSSatish Balay /* free up old matrix storage */ \ 254606d414cSSatish Balay ierr = PetscFree(b->a);CHKERRQ(ierr); \ 255606d414cSSatish Balay if (!b->singlemalloc) { \ 256606d414cSSatish Balay ierr = PetscFree(b->i);CHKERRQ(ierr); \ 257606d414cSSatish Balay ierr = PetscFree(b->j);CHKERRQ(ierr); \ 258606d414cSSatish Balay } \ 25974c639caSSatish Balay ba = b->a = new_a; bi = b->i = new_i; bj = b->j = new_j; \ 2607c922b88SBarry Smith b->singlemalloc = PETSC_TRUE; \ 261ac7a638eSSatish Balay \ 262ac7a638eSSatish Balay rp = bj + bi[brow]; ap = ba + bs2*bi[brow]; \ 263ac7a638eSSatish Balay rmax = bimax[brow] = bimax[brow] + CHUNKSIZE; \ 264b0a32e0cSBarry Smith PetscLogObjectMemory(B,CHUNKSIZE*(sizeof(int) + bs2*sizeof(MatScalar))); \ 26574c639caSSatish Balay b->maxnz += bs2*CHUNKSIZE; \ 26674c639caSSatish Balay b->reallocs++; \ 26774c639caSSatish Balay b->nz++; \ 268ac7a638eSSatish Balay } \ 269ac7a638eSSatish Balay N = nrow++ - 1; \ 270ac7a638eSSatish Balay /* shift up all the later entries in this row */ \ 271ac7a638eSSatish Balay for (ii=N; ii>=_i; ii--) { \ 272ac7a638eSSatish Balay rp[ii+1] = rp[ii]; \ 2733eda8832SBarry Smith ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 274ac7a638eSSatish Balay } \ 2753eda8832SBarry Smith if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr);} \ 276ac7a638eSSatish Balay rp[_i] = bcol; \ 277ac7a638eSSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 278ac7a638eSSatish Balay b_noinsert:; \ 279ac7a638eSSatish Balay bilen[brow] = nrow; \ 280ac7a638eSSatish Balay } 281ac7a638eSSatish Balay 28293fea6afSBarry Smith #if defined(PETSC_USE_MAT_SINGLE) 2834a2ae208SSatish Balay #undef __FUNCT__ 2844a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_MPIBAIJ" 28587828ca2SBarry Smith int MatSetValues_MPIBAIJ(Mat mat,int m,int *im,int n,int *in,PetscScalar *v,InsertMode addv) 28657b952d6SSatish Balay { 2876fa18ffdSBarry Smith Mat_MPIBAIJ *b = (Mat_MPIBAIJ*)mat->data; 28893fea6afSBarry Smith int ierr,i,N = m*n; 2896fa18ffdSBarry Smith MatScalar *vsingle; 29093fea6afSBarry Smith 29193fea6afSBarry Smith PetscFunctionBegin; 2926fa18ffdSBarry Smith if (N > b->setvalueslen) { 2936fa18ffdSBarry Smith if (b->setvaluescopy) {ierr = PetscFree(b->setvaluescopy);CHKERRQ(ierr);} 29482502324SSatish Balay ierr = PetscMalloc(N*sizeof(MatScalar),&b->setvaluescopy);CHKERRQ(ierr); 2956fa18ffdSBarry Smith b->setvalueslen = N; 2966fa18ffdSBarry Smith } 2976fa18ffdSBarry Smith vsingle = b->setvaluescopy; 2986fa18ffdSBarry Smith 29993fea6afSBarry Smith for (i=0; i<N; i++) { 30093fea6afSBarry Smith vsingle[i] = v[i]; 30193fea6afSBarry Smith } 30293fea6afSBarry Smith ierr = MatSetValues_MPIBAIJ_MatScalar(mat,m,im,n,in,vsingle,addv);CHKERRQ(ierr); 30393fea6afSBarry Smith PetscFunctionReturn(0); 30493fea6afSBarry Smith } 30593fea6afSBarry Smith 3064a2ae208SSatish Balay #undef __FUNCT__ 3074a2ae208SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_MPIBAIJ" 30887828ca2SBarry Smith int MatSetValuesBlocked_MPIBAIJ(Mat mat,int m,int *im,int n,int *in,PetscScalar *v,InsertMode addv) 30993fea6afSBarry Smith { 3106fa18ffdSBarry Smith Mat_MPIBAIJ *b = (Mat_MPIBAIJ*)mat->data; 3116fa18ffdSBarry Smith int ierr,i,N = m*n*b->bs2; 3126fa18ffdSBarry Smith MatScalar *vsingle; 31393fea6afSBarry Smith 31493fea6afSBarry Smith PetscFunctionBegin; 3156fa18ffdSBarry Smith if (N > b->setvalueslen) { 3166fa18ffdSBarry Smith if (b->setvaluescopy) {ierr = PetscFree(b->setvaluescopy);CHKERRQ(ierr);} 31782502324SSatish Balay ierr = PetscMalloc(N*sizeof(MatScalar),&b->setvaluescopy);CHKERRQ(ierr); 3186fa18ffdSBarry Smith b->setvalueslen = N; 3196fa18ffdSBarry Smith } 3206fa18ffdSBarry Smith vsingle = b->setvaluescopy; 32193fea6afSBarry Smith for (i=0; i<N; i++) { 32293fea6afSBarry Smith vsingle[i] = v[i]; 32393fea6afSBarry Smith } 32493fea6afSBarry Smith ierr = MatSetValuesBlocked_MPIBAIJ_MatScalar(mat,m,im,n,in,vsingle,addv);CHKERRQ(ierr); 32593fea6afSBarry Smith PetscFunctionReturn(0); 32693fea6afSBarry Smith } 3276fa18ffdSBarry Smith 3284a2ae208SSatish Balay #undef __FUNCT__ 3294a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_MPIBAIJ_HT" 33087828ca2SBarry Smith int MatSetValues_MPIBAIJ_HT(Mat mat,int m,int *im,int n,int *in,PetscScalar *v,InsertMode addv) 3316fa18ffdSBarry Smith { 3326fa18ffdSBarry Smith Mat_MPIBAIJ *b = (Mat_MPIBAIJ*)mat->data; 3336fa18ffdSBarry Smith int ierr,i,N = m*n; 3346fa18ffdSBarry Smith MatScalar *vsingle; 3356fa18ffdSBarry Smith 3366fa18ffdSBarry Smith PetscFunctionBegin; 3376fa18ffdSBarry Smith if (N > b->setvalueslen) { 3386fa18ffdSBarry Smith if (b->setvaluescopy) {ierr = PetscFree(b->setvaluescopy);CHKERRQ(ierr);} 33982502324SSatish Balay ierr = PetscMalloc(N*sizeof(MatScalar),&b->setvaluescopy);CHKERRQ(ierr); 3406fa18ffdSBarry Smith b->setvalueslen = N; 3416fa18ffdSBarry Smith } 3426fa18ffdSBarry Smith vsingle = b->setvaluescopy; 3436fa18ffdSBarry Smith for (i=0; i<N; i++) { 3446fa18ffdSBarry Smith vsingle[i] = v[i]; 3456fa18ffdSBarry Smith } 3466fa18ffdSBarry Smith ierr = MatSetValues_MPIBAIJ_HT_MatScalar(mat,m,im,n,in,vsingle,addv);CHKERRQ(ierr); 3476fa18ffdSBarry Smith PetscFunctionReturn(0); 3486fa18ffdSBarry Smith } 3496fa18ffdSBarry Smith 3504a2ae208SSatish Balay #undef __FUNCT__ 3514a2ae208SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_MPIBAIJ_HT" 35287828ca2SBarry Smith int MatSetValuesBlocked_MPIBAIJ_HT(Mat mat,int m,int *im,int n,int *in,PetscScalar *v,InsertMode addv) 3536fa18ffdSBarry Smith { 3546fa18ffdSBarry Smith Mat_MPIBAIJ *b = (Mat_MPIBAIJ*)mat->data; 3556fa18ffdSBarry Smith int ierr,i,N = m*n*b->bs2; 3566fa18ffdSBarry Smith MatScalar *vsingle; 3576fa18ffdSBarry Smith 3586fa18ffdSBarry Smith PetscFunctionBegin; 3596fa18ffdSBarry Smith if (N > b->setvalueslen) { 3606fa18ffdSBarry Smith if (b->setvaluescopy) {ierr = PetscFree(b->setvaluescopy);CHKERRQ(ierr);} 36182502324SSatish Balay ierr = PetscMalloc(N*sizeof(MatScalar),&b->setvaluescopy);CHKERRQ(ierr); 3626fa18ffdSBarry Smith b->setvalueslen = N; 3636fa18ffdSBarry Smith } 3646fa18ffdSBarry Smith vsingle = b->setvaluescopy; 3656fa18ffdSBarry Smith for (i=0; i<N; i++) { 3666fa18ffdSBarry Smith vsingle[i] = v[i]; 3676fa18ffdSBarry Smith } 3686fa18ffdSBarry Smith ierr = MatSetValuesBlocked_MPIBAIJ_HT_MatScalar(mat,m,im,n,in,vsingle,addv);CHKERRQ(ierr); 3696fa18ffdSBarry Smith PetscFunctionReturn(0); 3706fa18ffdSBarry Smith } 37193fea6afSBarry Smith #endif 37293fea6afSBarry Smith 3734a2ae208SSatish Balay #undef __FUNCT__ 3744a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_MPIBAIJ" 37593fea6afSBarry Smith int MatSetValues_MPIBAIJ_MatScalar(Mat mat,int m,int *im,int n,int *in,MatScalar *v,InsertMode addv) 37693fea6afSBarry Smith { 37757b952d6SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 37893fea6afSBarry Smith MatScalar value; 379273d9f13SBarry Smith PetscTruth roworiented = baij->roworiented; 3804fa0d573SSatish Balay int ierr,i,j,row,col; 381273d9f13SBarry Smith int rstart_orig=baij->rstart_bs; 3824fa0d573SSatish Balay int rend_orig=baij->rend_bs,cstart_orig=baij->cstart_bs; 3834fa0d573SSatish Balay int cend_orig=baij->cend_bs,bs=baij->bs; 38457b952d6SSatish Balay 385eada6651SSatish Balay /* Some Variables required in the macro */ 38680c1aa95SSatish Balay Mat A = baij->A; 38780c1aa95SSatish Balay Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)(A)->data; 388ac7a638eSSatish Balay int *aimax=a->imax,*ai=a->i,*ailen=a->ilen,*aj=a->j; 3893eda8832SBarry Smith MatScalar *aa=a->a; 390ac7a638eSSatish Balay 391ac7a638eSSatish Balay Mat B = baij->B; 392ac7a638eSSatish Balay Mat_SeqBAIJ *b = (Mat_SeqBAIJ*)(B)->data; 393ac7a638eSSatish Balay int *bimax=b->imax,*bi=b->i,*bilen=b->ilen,*bj=b->j; 3943eda8832SBarry Smith MatScalar *ba=b->a; 395ac7a638eSSatish Balay 396ac7a638eSSatish Balay int *rp,ii,nrow,_i,rmax,N,brow,bcol; 397ab26458aSBarry Smith int low,high,t,ridx,cidx,bs2=a->bs2; 3983eda8832SBarry Smith MatScalar *ap,*bap; 39980c1aa95SSatish Balay 400d64ed03dSBarry Smith PetscFunctionBegin; 40157b952d6SSatish Balay for (i=0; i<m; i++) { 4025ef9f2a5SBarry Smith if (im[i] < 0) continue; 403aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g) 404273d9f13SBarry Smith if (im[i] >= mat->M) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Row too large"); 405639f9d9dSBarry Smith #endif 40657b952d6SSatish Balay if (im[i] >= rstart_orig && im[i] < rend_orig) { 40757b952d6SSatish Balay row = im[i] - rstart_orig; 40857b952d6SSatish Balay for (j=0; j<n; j++) { 40957b952d6SSatish Balay if (in[j] >= cstart_orig && in[j] < cend_orig){ 41057b952d6SSatish Balay col = in[j] - cstart_orig; 41157b952d6SSatish Balay if (roworiented) value = v[i*n+j]; else value = v[i+j*m]; 412f5e9677aSSatish Balay MatSetValues_SeqBAIJ_A_Private(row,col,value,addv); 41380c1aa95SSatish Balay /* ierr = MatSetValues_SeqBAIJ(baij->A,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 41473959e64SBarry Smith } else if (in[j] < 0) continue; 415aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g) 416273d9f13SBarry Smith else if (in[j] >= mat->N) {SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Column too large");} 417639f9d9dSBarry Smith #endif 41857b952d6SSatish Balay else { 41957b952d6SSatish Balay if (mat->was_assembled) { 420905e6a2fSBarry Smith if (!baij->colmap) { 421905e6a2fSBarry Smith ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 422905e6a2fSBarry Smith } 423aa482453SBarry Smith #if defined (PETSC_USE_CTABLE) 4240f5bd95cSBarry Smith ierr = PetscTableFind(baij->colmap,in[j]/bs + 1,&col);CHKERRQ(ierr); 425bba1ac68SSatish Balay col = col - 1; 42648e59246SSatish Balay #else 427bba1ac68SSatish Balay col = baij->colmap[in[j]/bs] - 1; 42848e59246SSatish Balay #endif 42957b952d6SSatish Balay if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) { 43057b952d6SSatish Balay ierr = DisAssemble_MPIBAIJ(mat);CHKERRQ(ierr); 4318295de27SSatish Balay col = in[j]; 4329bf004c3SSatish Balay /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */ 4339bf004c3SSatish Balay B = baij->B; 4349bf004c3SSatish Balay b = (Mat_SeqBAIJ*)(B)->data; 4359bf004c3SSatish Balay bimax=b->imax;bi=b->i;bilen=b->ilen;bj=b->j; 4369bf004c3SSatish Balay ba=b->a; 437bba1ac68SSatish Balay } else col += in[j]%bs; 4388295de27SSatish Balay } else col = in[j]; 43957b952d6SSatish Balay if (roworiented) value = v[i*n+j]; else value = v[i+j*m]; 44090da58bdSSatish Balay MatSetValues_SeqBAIJ_B_Private(row,col,value,addv); 44190da58bdSSatish Balay /* ierr = MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 44257b952d6SSatish Balay } 44357b952d6SSatish Balay } 444d64ed03dSBarry Smith } else { 44590f02eecSBarry Smith if (!baij->donotstash) { 446ff2fd236SBarry Smith if (roworiented) { 4476fa18ffdSBarry Smith ierr = MatStashValuesRow_Private(&mat->stash,im[i],n,in,v+i*n);CHKERRQ(ierr); 448ff2fd236SBarry Smith } else { 4496fa18ffdSBarry Smith ierr = MatStashValuesCol_Private(&mat->stash,im[i],n,in,v+i,m);CHKERRQ(ierr); 45057b952d6SSatish Balay } 45157b952d6SSatish Balay } 45257b952d6SSatish Balay } 45390f02eecSBarry Smith } 4543a40ed3dSBarry Smith PetscFunctionReturn(0); 45557b952d6SSatish Balay } 45657b952d6SSatish Balay 4574a2ae208SSatish Balay #undef __FUNCT__ 4584a2ae208SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_MPIBAIJ_MatScalar" 45993fea6afSBarry Smith int MatSetValuesBlocked_MPIBAIJ_MatScalar(Mat mat,int m,int *im,int n,int *in,MatScalar *v,InsertMode addv) 460ab26458aSBarry Smith { 461ab26458aSBarry Smith Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 46293fea6afSBarry Smith MatScalar *value,*barray=baij->barray; 463273d9f13SBarry Smith PetscTruth roworiented = baij->roworiented; 464273d9f13SBarry Smith int ierr,i,j,ii,jj,row,col,rstart=baij->rstart; 465ab26458aSBarry Smith int rend=baij->rend,cstart=baij->cstart,stepval; 466ab26458aSBarry Smith int cend=baij->cend,bs=baij->bs,bs2=baij->bs2; 467ab26458aSBarry Smith 468b16ae2b1SBarry Smith PetscFunctionBegin; 46930793edcSSatish Balay if(!barray) { 47082502324SSatish Balay ierr = PetscMalloc(bs2*sizeof(MatScalar),&barray);CHKERRQ(ierr); 47182502324SSatish Balay baij->barray = barray; 47230793edcSSatish Balay } 47330793edcSSatish Balay 474ab26458aSBarry Smith if (roworiented) { 475ab26458aSBarry Smith stepval = (n-1)*bs; 476ab26458aSBarry Smith } else { 477ab26458aSBarry Smith stepval = (m-1)*bs; 478ab26458aSBarry Smith } 479ab26458aSBarry Smith for (i=0; i<m; i++) { 4805ef9f2a5SBarry Smith if (im[i] < 0) continue; 481aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g) 48229bbc08cSBarry Smith if (im[i] >= baij->Mbs) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large, row %d max %d",im[i],baij->Mbs); 483ab26458aSBarry Smith #endif 484ab26458aSBarry Smith if (im[i] >= rstart && im[i] < rend) { 485ab26458aSBarry Smith row = im[i] - rstart; 486ab26458aSBarry Smith for (j=0; j<n; j++) { 48715b57d14SSatish Balay /* If NumCol = 1 then a copy is not required */ 48815b57d14SSatish Balay if ((roworiented) && (n == 1)) { 48915b57d14SSatish Balay barray = v + i*bs2; 49015b57d14SSatish Balay } else if((!roworiented) && (m == 1)) { 49115b57d14SSatish Balay barray = v + j*bs2; 49215b57d14SSatish Balay } else { /* Here a copy is required */ 493ab26458aSBarry Smith if (roworiented) { 494ab26458aSBarry Smith value = v + i*(stepval+bs)*bs + j*bs; 495ab26458aSBarry Smith } else { 496ab26458aSBarry Smith value = v + j*(stepval+bs)*bs + i*bs; 497abef11f7SSatish Balay } 49847513183SBarry Smith for (ii=0; ii<bs; ii++,value+=stepval) { 49947513183SBarry Smith for (jj=0; jj<bs; jj++) { 50030793edcSSatish Balay *barray++ = *value++; 50147513183SBarry Smith } 50247513183SBarry Smith } 50330793edcSSatish Balay barray -=bs2; 50415b57d14SSatish Balay } 505abef11f7SSatish Balay 506abef11f7SSatish Balay if (in[j] >= cstart && in[j] < cend){ 507abef11f7SSatish Balay col = in[j] - cstart; 50893fea6afSBarry Smith ierr = MatSetValuesBlocked_SeqBAIJ_MatScalar(baij->A,1,&row,1,&col,barray,addv);CHKERRQ(ierr); 509ab26458aSBarry Smith } 5105ef9f2a5SBarry Smith else if (in[j] < 0) continue; 511aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g) 51229bbc08cSBarry Smith else if (in[j] >= baij->Nbs) {SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large, col %d max %d",in[j],baij->Nbs);} 513ab26458aSBarry Smith #endif 514ab26458aSBarry Smith else { 515ab26458aSBarry Smith if (mat->was_assembled) { 516ab26458aSBarry Smith if (!baij->colmap) { 517ab26458aSBarry Smith ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 518ab26458aSBarry Smith } 519a5eb4965SSatish Balay 520aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g) 521aa482453SBarry Smith #if defined (PETSC_USE_CTABLE) 522fa46199cSSatish Balay { int data; 5230f5bd95cSBarry Smith ierr = PetscTableFind(baij->colmap,in[j]+1,&data);CHKERRQ(ierr); 52429bbc08cSBarry Smith if ((data - 1) % bs) SETERRQ(PETSC_ERR_PLIB,"Incorrect colmap"); 525fa46199cSSatish Balay } 52648e59246SSatish Balay #else 52729bbc08cSBarry Smith if ((baij->colmap[in[j]] - 1) % bs) SETERRQ(PETSC_ERR_PLIB,"Incorrect colmap"); 528a5eb4965SSatish Balay #endif 52948e59246SSatish Balay #endif 530aa482453SBarry Smith #if defined (PETSC_USE_CTABLE) 5310f5bd95cSBarry Smith ierr = PetscTableFind(baij->colmap,in[j]+1,&col);CHKERRQ(ierr); 532fa46199cSSatish Balay col = (col - 1)/bs; 53348e59246SSatish Balay #else 534a5eb4965SSatish Balay col = (baij->colmap[in[j]] - 1)/bs; 53548e59246SSatish Balay #endif 536ab26458aSBarry Smith if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) { 537ab26458aSBarry Smith ierr = DisAssemble_MPIBAIJ(mat);CHKERRQ(ierr); 538ab26458aSBarry Smith col = in[j]; 539ab26458aSBarry Smith } 540ab26458aSBarry Smith } 541ab26458aSBarry Smith else col = in[j]; 54293fea6afSBarry Smith ierr = MatSetValuesBlocked_SeqBAIJ_MatScalar(baij->B,1,&row,1,&col,barray,addv);CHKERRQ(ierr); 543ab26458aSBarry Smith } 544ab26458aSBarry Smith } 545d64ed03dSBarry Smith } else { 546ab26458aSBarry Smith if (!baij->donotstash) { 547ff2fd236SBarry Smith if (roworiented) { 5486fa18ffdSBarry Smith ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 549ff2fd236SBarry Smith } else { 5506fa18ffdSBarry Smith ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 551ff2fd236SBarry Smith } 552abef11f7SSatish Balay } 553ab26458aSBarry Smith } 554ab26458aSBarry Smith } 5553a40ed3dSBarry Smith PetscFunctionReturn(0); 556ab26458aSBarry Smith } 5576fa18ffdSBarry Smith 5580bdbc534SSatish Balay #define HASH_KEY 0.6180339887 559c2760754SSatish Balay #define HASH(size,key,tmp) (tmp = (key)*HASH_KEY,(int)((size)*(tmp-(int)tmp))) 5606fa18ffdSBarry Smith /* #define HASH(size,key) ((int)((size)*fmod(((key)*HASH_KEY),1))) */ 561c2760754SSatish Balay /* #define HASH(size,key,tmp) ((int)((size)*fmod(((key)*HASH_KEY),1))) */ 5624a2ae208SSatish Balay #undef __FUNCT__ 5634a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_MPIBAIJ_HT_MatScalar" 5646fa18ffdSBarry Smith int MatSetValues_MPIBAIJ_HT_MatScalar(Mat mat,int m,int *im,int n,int *in,MatScalar *v,InsertMode addv) 5650bdbc534SSatish Balay { 5660bdbc534SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 567273d9f13SBarry Smith PetscTruth roworiented = baij->roworiented; 5680bdbc534SSatish Balay int ierr,i,j,row,col; 569273d9f13SBarry Smith int rstart_orig=baij->rstart_bs; 570c2760754SSatish Balay int rend_orig=baij->rend_bs,Nbs=baij->Nbs; 571c2760754SSatish Balay int h1,key,size=baij->ht_size,bs=baij->bs,*HT=baij->ht,idx; 572329f5518SBarry Smith PetscReal tmp; 5733eda8832SBarry Smith MatScalar **HD = baij->hd,value; 574aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g) 5754a15367fSSatish Balay int total_ct=baij->ht_total_ct,insert_ct=baij->ht_insert_ct; 5764a15367fSSatish Balay #endif 5770bdbc534SSatish Balay 5780bdbc534SSatish Balay PetscFunctionBegin; 5790bdbc534SSatish Balay 5800bdbc534SSatish Balay for (i=0; i<m; i++) { 581aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g) 58229bbc08cSBarry Smith if (im[i] < 0) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Negative row"); 583273d9f13SBarry Smith if (im[i] >= mat->M) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Row too large"); 5840bdbc534SSatish Balay #endif 5850bdbc534SSatish Balay row = im[i]; 586c2760754SSatish Balay if (row >= rstart_orig && row < rend_orig) { 5870bdbc534SSatish Balay for (j=0; j<n; j++) { 5880bdbc534SSatish Balay col = in[j]; 5896fa18ffdSBarry Smith if (roworiented) value = v[i*n+j]; else value = v[i+j*m]; 5900bdbc534SSatish Balay /* Look up into the Hash Table */ 591c2760754SSatish Balay key = (row/bs)*Nbs+(col/bs)+1; 592c2760754SSatish Balay h1 = HASH(size,key,tmp); 5930bdbc534SSatish Balay 594c2760754SSatish Balay 595c2760754SSatish Balay idx = h1; 596aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g) 597187ce0cbSSatish Balay insert_ct++; 598187ce0cbSSatish Balay total_ct++; 599187ce0cbSSatish Balay if (HT[idx] != key) { 600187ce0cbSSatish Balay for (idx=h1; (idx<size) && (HT[idx]!=key); idx++,total_ct++); 601187ce0cbSSatish Balay if (idx == size) { 602187ce0cbSSatish Balay for (idx=0; (idx<h1) && (HT[idx]!=key); idx++,total_ct++); 603187ce0cbSSatish Balay if (idx == h1) { 60429bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"(row,col) has no entry in the hash table"); 605187ce0cbSSatish Balay } 606187ce0cbSSatish Balay } 607187ce0cbSSatish Balay } 608187ce0cbSSatish Balay #else 609c2760754SSatish Balay if (HT[idx] != key) { 610c2760754SSatish Balay for (idx=h1; (idx<size) && (HT[idx]!=key); idx++); 611c2760754SSatish Balay if (idx == size) { 612c2760754SSatish Balay for (idx=0; (idx<h1) && (HT[idx]!=key); idx++); 613c2760754SSatish Balay if (idx == h1) { 61429bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"(row,col) has no entry in the hash table"); 615c2760754SSatish Balay } 616c2760754SSatish Balay } 617c2760754SSatish Balay } 618187ce0cbSSatish Balay #endif 619c2760754SSatish Balay /* A HASH table entry is found, so insert the values at the correct address */ 620c2760754SSatish Balay if (addv == ADD_VALUES) *(HD[idx]+ (col % bs)*bs + (row % bs)) += value; 621c2760754SSatish Balay else *(HD[idx]+ (col % bs)*bs + (row % bs)) = value; 6220bdbc534SSatish Balay } 6230bdbc534SSatish Balay } else { 6240bdbc534SSatish Balay if (!baij->donotstash) { 625ff2fd236SBarry Smith if (roworiented) { 6268798bf22SSatish Balay ierr = MatStashValuesRow_Private(&mat->stash,im[i],n,in,v+i*n);CHKERRQ(ierr); 627ff2fd236SBarry Smith } else { 6288798bf22SSatish Balay ierr = MatStashValuesCol_Private(&mat->stash,im[i],n,in,v+i,m);CHKERRQ(ierr); 6290bdbc534SSatish Balay } 6300bdbc534SSatish Balay } 6310bdbc534SSatish Balay } 6320bdbc534SSatish Balay } 633aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g) 634187ce0cbSSatish Balay baij->ht_total_ct = total_ct; 635187ce0cbSSatish Balay baij->ht_insert_ct = insert_ct; 636187ce0cbSSatish Balay #endif 6370bdbc534SSatish Balay PetscFunctionReturn(0); 6380bdbc534SSatish Balay } 6390bdbc534SSatish Balay 6404a2ae208SSatish Balay #undef __FUNCT__ 6414a2ae208SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_MPIBAIJ_HT_MatScalar" 6426fa18ffdSBarry Smith int MatSetValuesBlocked_MPIBAIJ_HT_MatScalar(Mat mat,int m,int *im,int n,int *in,MatScalar *v,InsertMode addv) 6430bdbc534SSatish Balay { 6440bdbc534SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 645273d9f13SBarry Smith PetscTruth roworiented = baij->roworiented; 6468798bf22SSatish Balay int ierr,i,j,ii,jj,row,col; 647273d9f13SBarry Smith int rstart=baij->rstart ; 648b4cc0f5aSSatish Balay int rend=baij->rend,stepval,bs=baij->bs,bs2=baij->bs2; 649c2760754SSatish Balay int h1,key,size=baij->ht_size,idx,*HT=baij->ht,Nbs=baij->Nbs; 650329f5518SBarry Smith PetscReal tmp; 6513eda8832SBarry Smith MatScalar **HD = baij->hd,*baij_a; 6526fa18ffdSBarry Smith MatScalar *v_t,*value; 653aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g) 6544a15367fSSatish Balay int total_ct=baij->ht_total_ct,insert_ct=baij->ht_insert_ct; 6554a15367fSSatish Balay #endif 6560bdbc534SSatish Balay 657d0a41580SSatish Balay PetscFunctionBegin; 658d0a41580SSatish Balay 6590bdbc534SSatish Balay if (roworiented) { 6600bdbc534SSatish Balay stepval = (n-1)*bs; 6610bdbc534SSatish Balay } else { 6620bdbc534SSatish Balay stepval = (m-1)*bs; 6630bdbc534SSatish Balay } 6640bdbc534SSatish Balay for (i=0; i<m; i++) { 665aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g) 66629bbc08cSBarry Smith if (im[i] < 0) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Negative row"); 66729bbc08cSBarry Smith if (im[i] >= baij->Mbs) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Row too large"); 6680bdbc534SSatish Balay #endif 6690bdbc534SSatish Balay row = im[i]; 670187ce0cbSSatish Balay v_t = v + i*bs2; 671c2760754SSatish Balay if (row >= rstart && row < rend) { 6720bdbc534SSatish Balay for (j=0; j<n; j++) { 6730bdbc534SSatish Balay col = in[j]; 6740bdbc534SSatish Balay 6750bdbc534SSatish Balay /* Look up into the Hash Table */ 676c2760754SSatish Balay key = row*Nbs+col+1; 677c2760754SSatish Balay h1 = HASH(size,key,tmp); 6780bdbc534SSatish Balay 679c2760754SSatish Balay idx = h1; 680aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g) 681187ce0cbSSatish Balay total_ct++; 682187ce0cbSSatish Balay insert_ct++; 683187ce0cbSSatish Balay if (HT[idx] != key) { 684187ce0cbSSatish Balay for (idx=h1; (idx<size) && (HT[idx]!=key); idx++,total_ct++); 685187ce0cbSSatish Balay if (idx == size) { 686187ce0cbSSatish Balay for (idx=0; (idx<h1) && (HT[idx]!=key); idx++,total_ct++); 687187ce0cbSSatish Balay if (idx == h1) { 68829bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"(row,col) has no entry in the hash table"); 689187ce0cbSSatish Balay } 690187ce0cbSSatish Balay } 691187ce0cbSSatish Balay } 692187ce0cbSSatish Balay #else 693c2760754SSatish Balay if (HT[idx] != key) { 694c2760754SSatish Balay for (idx=h1; (idx<size) && (HT[idx]!=key); idx++); 695c2760754SSatish Balay if (idx == size) { 696c2760754SSatish Balay for (idx=0; (idx<h1) && (HT[idx]!=key); idx++); 697c2760754SSatish Balay if (idx == h1) { 69829bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"(row,col) has no entry in the hash table"); 699c2760754SSatish Balay } 700c2760754SSatish Balay } 701c2760754SSatish Balay } 702187ce0cbSSatish Balay #endif 703c2760754SSatish Balay baij_a = HD[idx]; 7040bdbc534SSatish Balay if (roworiented) { 705c2760754SSatish Balay /*value = v + i*(stepval+bs)*bs + j*bs;*/ 706187ce0cbSSatish Balay /* value = v + (i*(stepval+bs)+j)*bs; */ 707187ce0cbSSatish Balay value = v_t; 708187ce0cbSSatish Balay v_t += bs; 709fef45726SSatish Balay if (addv == ADD_VALUES) { 710c2760754SSatish Balay for (ii=0; ii<bs; ii++,value+=stepval) { 711c2760754SSatish Balay for (jj=ii; jj<bs2; jj+=bs) { 712fef45726SSatish Balay baij_a[jj] += *value++; 713b4cc0f5aSSatish Balay } 714b4cc0f5aSSatish Balay } 715fef45726SSatish Balay } else { 716c2760754SSatish Balay for (ii=0; ii<bs; ii++,value+=stepval) { 717c2760754SSatish Balay for (jj=ii; jj<bs2; jj+=bs) { 718fef45726SSatish Balay baij_a[jj] = *value++; 719fef45726SSatish Balay } 720fef45726SSatish Balay } 721fef45726SSatish Balay } 7220bdbc534SSatish Balay } else { 7230bdbc534SSatish Balay value = v + j*(stepval+bs)*bs + i*bs; 724fef45726SSatish Balay if (addv == ADD_VALUES) { 725b4cc0f5aSSatish Balay for (ii=0; ii<bs; ii++,value+=stepval,baij_a+=bs) { 7260bdbc534SSatish Balay for (jj=0; jj<bs; jj++) { 727fef45726SSatish Balay baij_a[jj] += *value++; 728fef45726SSatish Balay } 729fef45726SSatish Balay } 730fef45726SSatish Balay } else { 731fef45726SSatish Balay for (ii=0; ii<bs; ii++,value+=stepval,baij_a+=bs) { 732fef45726SSatish Balay for (jj=0; jj<bs; jj++) { 733fef45726SSatish Balay baij_a[jj] = *value++; 734fef45726SSatish Balay } 735b4cc0f5aSSatish Balay } 7360bdbc534SSatish Balay } 7370bdbc534SSatish Balay } 7380bdbc534SSatish Balay } 7390bdbc534SSatish Balay } else { 7400bdbc534SSatish Balay if (!baij->donotstash) { 7410bdbc534SSatish Balay if (roworiented) { 7428798bf22SSatish Balay ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 7430bdbc534SSatish Balay } else { 7448798bf22SSatish Balay ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 7450bdbc534SSatish Balay } 7460bdbc534SSatish Balay } 7470bdbc534SSatish Balay } 7480bdbc534SSatish Balay } 749aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g) 750187ce0cbSSatish Balay baij->ht_total_ct = total_ct; 751187ce0cbSSatish Balay baij->ht_insert_ct = insert_ct; 752187ce0cbSSatish Balay #endif 7530bdbc534SSatish Balay PetscFunctionReturn(0); 7540bdbc534SSatish Balay } 755133cdb44SSatish Balay 7564a2ae208SSatish Balay #undef __FUNCT__ 7574a2ae208SSatish Balay #define __FUNCT__ "MatGetValues_MPIBAIJ" 75887828ca2SBarry Smith int MatGetValues_MPIBAIJ(Mat mat,int m,int *idxm,int n,int *idxn,PetscScalar *v) 759d6de1c52SSatish Balay { 760d6de1c52SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 761d6de1c52SSatish Balay int bs=baij->bs,ierr,i,j,bsrstart = baij->rstart*bs,bsrend = baij->rend*bs; 76248e59246SSatish Balay int bscstart = baij->cstart*bs,bscend = baij->cend*bs,row,col,data; 763d6de1c52SSatish Balay 764133cdb44SSatish Balay PetscFunctionBegin; 765d6de1c52SSatish Balay for (i=0; i<m; i++) { 76629bbc08cSBarry Smith if (idxm[i] < 0) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Negative row"); 767273d9f13SBarry Smith if (idxm[i] >= mat->M) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Row too large"); 768d6de1c52SSatish Balay if (idxm[i] >= bsrstart && idxm[i] < bsrend) { 769d6de1c52SSatish Balay row = idxm[i] - bsrstart; 770d6de1c52SSatish Balay for (j=0; j<n; j++) { 77129bbc08cSBarry Smith if (idxn[j] < 0) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Negative column"); 772273d9f13SBarry Smith if (idxn[j] >= mat->N) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Column too large"); 773d6de1c52SSatish Balay if (idxn[j] >= bscstart && idxn[j] < bscend){ 774d6de1c52SSatish Balay col = idxn[j] - bscstart; 77598dd23e9SBarry Smith ierr = MatGetValues_SeqBAIJ(baij->A,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr); 776d64ed03dSBarry Smith } else { 777905e6a2fSBarry Smith if (!baij->colmap) { 778905e6a2fSBarry Smith ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 779905e6a2fSBarry Smith } 780aa482453SBarry Smith #if defined (PETSC_USE_CTABLE) 7810f5bd95cSBarry Smith ierr = PetscTableFind(baij->colmap,idxn[j]/bs+1,&data);CHKERRQ(ierr); 782fa46199cSSatish Balay data --; 78348e59246SSatish Balay #else 78448e59246SSatish Balay data = baij->colmap[idxn[j]/bs]-1; 78548e59246SSatish Balay #endif 78648e59246SSatish Balay if((data < 0) || (baij->garray[data/bs] != idxn[j]/bs)) *(v+i*n+j) = 0.0; 787d9d09a02SSatish Balay else { 78848e59246SSatish Balay col = data + idxn[j]%bs; 78998dd23e9SBarry Smith ierr = MatGetValues_SeqBAIJ(baij->B,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr); 790d6de1c52SSatish Balay } 791d6de1c52SSatish Balay } 792d6de1c52SSatish Balay } 793d64ed03dSBarry Smith } else { 79429bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"Only local values currently supported"); 795d6de1c52SSatish Balay } 796d6de1c52SSatish Balay } 7973a40ed3dSBarry Smith PetscFunctionReturn(0); 798d6de1c52SSatish Balay } 799d6de1c52SSatish Balay 8004a2ae208SSatish Balay #undef __FUNCT__ 8014a2ae208SSatish Balay #define __FUNCT__ "MatNorm_MPIBAIJ" 802064f8208SBarry Smith int MatNorm_MPIBAIJ(Mat mat,NormType type,PetscReal *nrm) 803d6de1c52SSatish Balay { 804d6de1c52SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 805d6de1c52SSatish Balay Mat_SeqBAIJ *amat = (Mat_SeqBAIJ*)baij->A->data,*bmat = (Mat_SeqBAIJ*)baij->B->data; 806acdf5bf4SSatish Balay int ierr,i,bs2=baij->bs2; 807329f5518SBarry Smith PetscReal sum = 0.0; 8083eda8832SBarry Smith MatScalar *v; 809d6de1c52SSatish Balay 810d64ed03dSBarry Smith PetscFunctionBegin; 811d6de1c52SSatish Balay if (baij->size == 1) { 812064f8208SBarry Smith ierr = MatNorm(baij->A,type,nrm);CHKERRQ(ierr); 813d6de1c52SSatish Balay } else { 814d6de1c52SSatish Balay if (type == NORM_FROBENIUS) { 815d6de1c52SSatish Balay v = amat->a; 816d6de1c52SSatish Balay for (i=0; i<amat->nz*bs2; i++) { 817aa482453SBarry Smith #if defined(PETSC_USE_COMPLEX) 818329f5518SBarry Smith sum += PetscRealPart(PetscConj(*v)*(*v)); v++; 819d6de1c52SSatish Balay #else 820d6de1c52SSatish Balay sum += (*v)*(*v); v++; 821d6de1c52SSatish Balay #endif 822d6de1c52SSatish Balay } 823d6de1c52SSatish Balay v = bmat->a; 824d6de1c52SSatish Balay for (i=0; i<bmat->nz*bs2; i++) { 825aa482453SBarry Smith #if defined(PETSC_USE_COMPLEX) 826329f5518SBarry Smith sum += PetscRealPart(PetscConj(*v)*(*v)); v++; 827d6de1c52SSatish Balay #else 828d6de1c52SSatish Balay sum += (*v)*(*v); v++; 829d6de1c52SSatish Balay #endif 830d6de1c52SSatish Balay } 831064f8208SBarry Smith ierr = MPI_Allreduce(&sum,nrm,1,MPIU_REAL,MPI_SUM,mat->comm);CHKERRQ(ierr); 832064f8208SBarry Smith *nrm = sqrt(*nrm); 833d64ed03dSBarry Smith } else { 83429bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"No support for this norm yet"); 835d6de1c52SSatish Balay } 836d64ed03dSBarry Smith } 8373a40ed3dSBarry Smith PetscFunctionReturn(0); 838d6de1c52SSatish Balay } 83957b952d6SSatish Balay 840bd7f49f5SSatish Balay 841fef45726SSatish Balay /* 842fef45726SSatish Balay Creates the hash table, and sets the table 843fef45726SSatish Balay This table is created only once. 844fef45726SSatish Balay If new entried need to be added to the matrix 845fef45726SSatish Balay then the hash table has to be destroyed and 846fef45726SSatish Balay recreated. 847fef45726SSatish Balay */ 8484a2ae208SSatish Balay #undef __FUNCT__ 8494a2ae208SSatish Balay #define __FUNCT__ "MatCreateHashTable_MPIBAIJ_Private" 850329f5518SBarry Smith int MatCreateHashTable_MPIBAIJ_Private(Mat mat,PetscReal factor) 851596b8d2eSBarry Smith { 852596b8d2eSBarry Smith Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 853596b8d2eSBarry Smith Mat A = baij->A,B=baij->B; 854596b8d2eSBarry Smith Mat_SeqBAIJ *a=(Mat_SeqBAIJ *)A->data,*b=(Mat_SeqBAIJ *)B->data; 8550bdbc534SSatish Balay int i,j,k,nz=a->nz+b->nz,h1,*ai=a->i,*aj=a->j,*bi=b->i,*bj=b->j; 856549d3d68SSatish Balay int size,bs2=baij->bs2,rstart=baij->rstart,ierr; 857187ce0cbSSatish Balay int cstart=baij->cstart,*garray=baij->garray,row,col,Nbs=baij->Nbs; 858fef45726SSatish Balay int *HT,key; 8593eda8832SBarry Smith MatScalar **HD; 860329f5518SBarry Smith PetscReal tmp; 861aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g) 8624a15367fSSatish Balay int ct=0,max=0; 8634a15367fSSatish Balay #endif 864fef45726SSatish Balay 865d64ed03dSBarry Smith PetscFunctionBegin; 8660bdbc534SSatish Balay baij->ht_size=(int)(factor*nz); 8670bdbc534SSatish Balay size = baij->ht_size; 868fef45726SSatish Balay 8690bdbc534SSatish Balay if (baij->ht) { 8700bdbc534SSatish Balay PetscFunctionReturn(0); 871596b8d2eSBarry Smith } 8720bdbc534SSatish Balay 873fef45726SSatish Balay /* Allocate Memory for Hash Table */ 874b0a32e0cSBarry Smith ierr = PetscMalloc((size)*(sizeof(int)+sizeof(MatScalar*))+1,&baij->hd);CHKERRQ(ierr); 875b9e4cc15SSatish Balay baij->ht = (int*)(baij->hd + size); 876b9e4cc15SSatish Balay HD = baij->hd; 877a07cd24cSSatish Balay HT = baij->ht; 878b9e4cc15SSatish Balay 879b9e4cc15SSatish Balay 88087828ca2SBarry Smith ierr = PetscMemzero(HD,size*(sizeof(int)+sizeof(PetscScalar*)));CHKERRQ(ierr); 8810bdbc534SSatish Balay 882596b8d2eSBarry Smith 883596b8d2eSBarry Smith /* Loop Over A */ 8840bdbc534SSatish Balay for (i=0; i<a->mbs; i++) { 885596b8d2eSBarry Smith for (j=ai[i]; j<ai[i+1]; j++) { 8860bdbc534SSatish Balay row = i+rstart; 8870bdbc534SSatish Balay col = aj[j]+cstart; 888596b8d2eSBarry Smith 889187ce0cbSSatish Balay key = row*Nbs + col + 1; 890c2760754SSatish Balay h1 = HASH(size,key,tmp); 8910bdbc534SSatish Balay for (k=0; k<size; k++){ 8920bdbc534SSatish Balay if (HT[(h1+k)%size] == 0.0) { 8930bdbc534SSatish Balay HT[(h1+k)%size] = key; 8940bdbc534SSatish Balay HD[(h1+k)%size] = a->a + j*bs2; 895596b8d2eSBarry Smith break; 896aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g) 897187ce0cbSSatish Balay } else { 898187ce0cbSSatish Balay ct++; 899187ce0cbSSatish Balay #endif 900596b8d2eSBarry Smith } 901187ce0cbSSatish Balay } 902aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g) 903187ce0cbSSatish Balay if (k> max) max = k; 904187ce0cbSSatish Balay #endif 905596b8d2eSBarry Smith } 906596b8d2eSBarry Smith } 907596b8d2eSBarry Smith /* Loop Over B */ 9080bdbc534SSatish Balay for (i=0; i<b->mbs; i++) { 909596b8d2eSBarry Smith for (j=bi[i]; j<bi[i+1]; j++) { 9100bdbc534SSatish Balay row = i+rstart; 9110bdbc534SSatish Balay col = garray[bj[j]]; 912187ce0cbSSatish Balay key = row*Nbs + col + 1; 913c2760754SSatish Balay h1 = HASH(size,key,tmp); 9140bdbc534SSatish Balay for (k=0; k<size; k++){ 9150bdbc534SSatish Balay if (HT[(h1+k)%size] == 0.0) { 9160bdbc534SSatish Balay HT[(h1+k)%size] = key; 9170bdbc534SSatish Balay HD[(h1+k)%size] = b->a + j*bs2; 918596b8d2eSBarry Smith break; 919aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g) 920187ce0cbSSatish Balay } else { 921187ce0cbSSatish Balay ct++; 922187ce0cbSSatish Balay #endif 923596b8d2eSBarry Smith } 924187ce0cbSSatish Balay } 925aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g) 926187ce0cbSSatish Balay if (k> max) max = k; 927187ce0cbSSatish Balay #endif 928596b8d2eSBarry Smith } 929596b8d2eSBarry Smith } 930596b8d2eSBarry Smith 931596b8d2eSBarry Smith /* Print Summary */ 932aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g) 933c38d4ed2SBarry Smith for (i=0,j=0; i<size; i++) { 934596b8d2eSBarry Smith if (HT[i]) {j++;} 935c38d4ed2SBarry Smith } 936b0a32e0cSBarry Smith PetscLogInfo(0,"MatCreateHashTable_MPIBAIJ_Private: Average Search = %5.2f,max search = %d\n",(j== 0)? 0.0:((PetscReal)(ct+j))/j,max); 937187ce0cbSSatish Balay #endif 9383a40ed3dSBarry Smith PetscFunctionReturn(0); 939596b8d2eSBarry Smith } 94057b952d6SSatish Balay 9414a2ae208SSatish Balay #undef __FUNCT__ 9424a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyBegin_MPIBAIJ" 943bbb85fb3SSatish Balay int MatAssemblyBegin_MPIBAIJ(Mat mat,MatAssemblyType mode) 944bbb85fb3SSatish Balay { 945bbb85fb3SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 946ff2fd236SBarry Smith int ierr,nstash,reallocs; 947bbb85fb3SSatish Balay InsertMode addv; 948bbb85fb3SSatish Balay 949bbb85fb3SSatish Balay PetscFunctionBegin; 950bbb85fb3SSatish Balay if (baij->donotstash) { 951bbb85fb3SSatish Balay PetscFunctionReturn(0); 952bbb85fb3SSatish Balay } 953bbb85fb3SSatish Balay 954bbb85fb3SSatish Balay /* make sure all processors are either in INSERTMODE or ADDMODE */ 955bbb85fb3SSatish Balay ierr = MPI_Allreduce(&mat->insertmode,&addv,1,MPI_INT,MPI_BOR,mat->comm);CHKERRQ(ierr); 956bbb85fb3SSatish Balay if (addv == (ADD_VALUES|INSERT_VALUES)) { 95729bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Some processors inserted others added"); 958bbb85fb3SSatish Balay } 959bbb85fb3SSatish Balay mat->insertmode = addv; /* in case this processor had no cache */ 960bbb85fb3SSatish Balay 9618798bf22SSatish Balay ierr = MatStashScatterBegin_Private(&mat->stash,baij->rowners_bs);CHKERRQ(ierr); 9628798bf22SSatish Balay ierr = MatStashScatterBegin_Private(&mat->bstash,baij->rowners);CHKERRQ(ierr); 9638798bf22SSatish Balay ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr); 964b0a32e0cSBarry Smith PetscLogInfo(0,"MatAssemblyBegin_MPIBAIJ:Stash has %d entries,uses %d mallocs.\n",nstash,reallocs); 96546680499SSatish Balay ierr = MatStashGetInfo_Private(&mat->bstash,&nstash,&reallocs);CHKERRQ(ierr); 966b0a32e0cSBarry Smith PetscLogInfo(0,"MatAssemblyBegin_MPIBAIJ:Block-Stash has %d entries, uses %d mallocs.\n",nstash,reallocs); 967bbb85fb3SSatish Balay PetscFunctionReturn(0); 968bbb85fb3SSatish Balay } 969bbb85fb3SSatish Balay 970*a56a16c8SHong Zhang EXTERN int MatUseDSCPACK_MPIBAIJ(Mat); 9714a2ae208SSatish Balay #undef __FUNCT__ 9724a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyEnd_MPIBAIJ" 973bbb85fb3SSatish Balay int MatAssemblyEnd_MPIBAIJ(Mat mat,MatAssemblyType mode) 974bbb85fb3SSatish Balay { 975bbb85fb3SSatish Balay Mat_MPIBAIJ *baij=(Mat_MPIBAIJ*)mat->data; 976a2d1c673SSatish Balay Mat_SeqBAIJ *a=(Mat_SeqBAIJ*)baij->A->data,*b=(Mat_SeqBAIJ*)baij->B->data; 977a2d1c673SSatish Balay int i,j,rstart,ncols,n,ierr,flg,bs2=baij->bs2; 9787c922b88SBarry Smith int *row,*col,other_disassembled; 9797c922b88SBarry Smith PetscTruth r1,r2,r3; 9803eda8832SBarry Smith MatScalar *val; 981bbb85fb3SSatish Balay InsertMode addv = mat->insertmode; 982*a56a16c8SHong Zhang #if defined(PETSC_HAVE_DSCPACK) 983*a56a16c8SHong Zhang PetscTruth flag; 984*a56a16c8SHong Zhang #endif 985bbb85fb3SSatish Balay 986bbb85fb3SSatish Balay PetscFunctionBegin; 987bbb85fb3SSatish Balay if (!baij->donotstash) { 988a2d1c673SSatish Balay while (1) { 9898798bf22SSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 990a2d1c673SSatish Balay if (!flg) break; 991a2d1c673SSatish Balay 992bbb85fb3SSatish Balay for (i=0; i<n;) { 993bbb85fb3SSatish Balay /* Now identify the consecutive vals belonging to the same row */ 994bbb85fb3SSatish Balay for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; } 995bbb85fb3SSatish Balay if (j < n) ncols = j-i; 996bbb85fb3SSatish Balay else ncols = n-i; 997bbb85fb3SSatish Balay /* Now assemble all these values with a single function call */ 99893fea6afSBarry Smith ierr = MatSetValues_MPIBAIJ_MatScalar(mat,1,row+i,ncols,col+i,val+i,addv);CHKERRQ(ierr); 999bbb85fb3SSatish Balay i = j; 1000bbb85fb3SSatish Balay } 1001bbb85fb3SSatish Balay } 10028798bf22SSatish Balay ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr); 1003a2d1c673SSatish Balay /* Now process the block-stash. Since the values are stashed column-oriented, 1004a2d1c673SSatish Balay set the roworiented flag to column oriented, and after MatSetValues() 1005a2d1c673SSatish Balay restore the original flags */ 1006a2d1c673SSatish Balay r1 = baij->roworiented; 1007a2d1c673SSatish Balay r2 = a->roworiented; 1008a2d1c673SSatish Balay r3 = b->roworiented; 10097c922b88SBarry Smith baij->roworiented = PETSC_FALSE; 10107c922b88SBarry Smith a->roworiented = PETSC_FALSE; 10117c922b88SBarry Smith b->roworiented = PETSC_FALSE; 1012a2d1c673SSatish Balay while (1) { 10138798bf22SSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->bstash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 1014a2d1c673SSatish Balay if (!flg) break; 1015a2d1c673SSatish Balay 1016a2d1c673SSatish Balay for (i=0; i<n;) { 1017a2d1c673SSatish Balay /* Now identify the consecutive vals belonging to the same row */ 1018a2d1c673SSatish Balay for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; } 1019a2d1c673SSatish Balay if (j < n) ncols = j-i; 1020a2d1c673SSatish Balay else ncols = n-i; 102193fea6afSBarry Smith ierr = MatSetValuesBlocked_MPIBAIJ_MatScalar(mat,1,row+i,ncols,col+i,val+i*bs2,addv);CHKERRQ(ierr); 1022a2d1c673SSatish Balay i = j; 1023a2d1c673SSatish Balay } 1024a2d1c673SSatish Balay } 10258798bf22SSatish Balay ierr = MatStashScatterEnd_Private(&mat->bstash);CHKERRQ(ierr); 1026a2d1c673SSatish Balay baij->roworiented = r1; 1027a2d1c673SSatish Balay a->roworiented = r2; 1028a2d1c673SSatish Balay b->roworiented = r3; 1029bbb85fb3SSatish Balay } 1030bbb85fb3SSatish Balay 1031bbb85fb3SSatish Balay ierr = MatAssemblyBegin(baij->A,mode);CHKERRQ(ierr); 1032bbb85fb3SSatish Balay ierr = MatAssemblyEnd(baij->A,mode);CHKERRQ(ierr); 1033bbb85fb3SSatish Balay 1034bbb85fb3SSatish Balay /* determine if any processor has disassembled, if so we must 1035bbb85fb3SSatish Balay also disassemble ourselfs, in order that we may reassemble. */ 1036bbb85fb3SSatish Balay /* 1037bbb85fb3SSatish Balay if nonzero structure of submatrix B cannot change then we know that 1038bbb85fb3SSatish Balay no processor disassembled thus we can skip this stuff 1039bbb85fb3SSatish Balay */ 1040bbb85fb3SSatish Balay if (!((Mat_SeqBAIJ*)baij->B->data)->nonew) { 1041bbb85fb3SSatish Balay ierr = MPI_Allreduce(&mat->was_assembled,&other_disassembled,1,MPI_INT,MPI_PROD,mat->comm);CHKERRQ(ierr); 1042bbb85fb3SSatish Balay if (mat->was_assembled && !other_disassembled) { 1043bbb85fb3SSatish Balay ierr = DisAssemble_MPIBAIJ(mat);CHKERRQ(ierr); 1044bbb85fb3SSatish Balay } 1045bbb85fb3SSatish Balay } 1046bbb85fb3SSatish Balay 1047bbb85fb3SSatish Balay if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) { 1048bbb85fb3SSatish Balay ierr = MatSetUpMultiply_MPIBAIJ(mat);CHKERRQ(ierr); 1049bbb85fb3SSatish Balay } 1050bbb85fb3SSatish Balay ierr = MatAssemblyBegin(baij->B,mode);CHKERRQ(ierr); 1051bbb85fb3SSatish Balay ierr = MatAssemblyEnd(baij->B,mode);CHKERRQ(ierr); 1052bbb85fb3SSatish Balay 1053aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g) 1054bbb85fb3SSatish Balay if (baij->ht && mode== MAT_FINAL_ASSEMBLY) { 1055f6275e2eSBarry Smith PetscLogInfo(0,"MatAssemblyEnd_MPIBAIJ:Average Hash Table Search in MatSetValues = %5.2f\n",((PetscReal)baij->ht_total_ct)/baij->ht_insert_ct); 1056bbb85fb3SSatish Balay baij->ht_total_ct = 0; 1057bbb85fb3SSatish Balay baij->ht_insert_ct = 0; 1058bbb85fb3SSatish Balay } 1059bbb85fb3SSatish Balay #endif 1060bbb85fb3SSatish Balay if (baij->ht_flag && !baij->ht && mode == MAT_FINAL_ASSEMBLY) { 1061bbb85fb3SSatish Balay ierr = MatCreateHashTable_MPIBAIJ_Private(mat,baij->ht_fact);CHKERRQ(ierr); 1062bbb85fb3SSatish Balay mat->ops->setvalues = MatSetValues_MPIBAIJ_HT; 1063bbb85fb3SSatish Balay mat->ops->setvaluesblocked = MatSetValuesBlocked_MPIBAIJ_HT; 1064bbb85fb3SSatish Balay } 1065bbb85fb3SSatish Balay 1066606d414cSSatish Balay if (baij->rowvalues) { 1067606d414cSSatish Balay ierr = PetscFree(baij->rowvalues);CHKERRQ(ierr); 1068606d414cSSatish Balay baij->rowvalues = 0; 1069606d414cSSatish Balay } 1070*a56a16c8SHong Zhang #if defined(PETSC_HAVE_DSCPACK) 1071*a56a16c8SHong Zhang ierr = PetscOptionsHasName(PETSC_NULL,"-mat_baij_dscpack",&flag);CHKERRQ(ierr); 1072*a56a16c8SHong Zhang if (flag) { ierr = MatUseDSCPACK_MPIBAIJ(mat);CHKERRQ(ierr); } 1073*a56a16c8SHong Zhang #endif 1074bbb85fb3SSatish Balay PetscFunctionReturn(0); 1075bbb85fb3SSatish Balay } 107657b952d6SSatish Balay 10774a2ae208SSatish Balay #undef __FUNCT__ 10784a2ae208SSatish Balay #define __FUNCT__ "MatView_MPIBAIJ_ASCIIorDraworSocket" 1079b0a32e0cSBarry Smith static int MatView_MPIBAIJ_ASCIIorDraworSocket(Mat mat,PetscViewer viewer) 108057b952d6SSatish Balay { 108157b952d6SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 1082fb9695e5SSatish Balay int ierr,bs = baij->bs,size = baij->size,rank = baij->rank; 10836831982aSBarry Smith PetscTruth isascii,isdraw; 1084b0a32e0cSBarry Smith PetscViewer sviewer; 1085f3ef73ceSBarry Smith PetscViewerFormat format; 108657b952d6SSatish Balay 1087d64ed03dSBarry Smith PetscFunctionBegin; 1088b0a32e0cSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&isascii);CHKERRQ(ierr); 1089fb9695e5SSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr); 10900f5bd95cSBarry Smith if (isascii) { 1091b0a32e0cSBarry Smith ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr); 1092fb9695e5SSatish Balay if (format == PETSC_VIEWER_ASCII_INFO_LONG) { 10934e220ebcSLois Curfman McInnes MatInfo info; 1094d132466eSBarry Smith ierr = MPI_Comm_rank(mat->comm,&rank);CHKERRQ(ierr); 1095d41123aaSBarry Smith ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr); 1096b0a32e0cSBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Local rows %d nz %d nz alloced %d bs %d mem %d\n", 1097273d9f13SBarry Smith rank,mat->m,(int)info.nz_used*bs,(int)info.nz_allocated*bs, 10986831982aSBarry Smith baij->bs,(int)info.memory);CHKERRQ(ierr); 1099d132466eSBarry Smith ierr = MatGetInfo(baij->A,MAT_LOCAL,&info);CHKERRQ(ierr); 1100b0a32e0cSBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] on-diagonal part: nz %d \n",rank,(int)info.nz_used*bs);CHKERRQ(ierr); 1101d132466eSBarry Smith ierr = MatGetInfo(baij->B,MAT_LOCAL,&info);CHKERRQ(ierr); 1102b0a32e0cSBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] off-diagonal part: nz %d \n",rank,(int)info.nz_used*bs);CHKERRQ(ierr); 1103b0a32e0cSBarry Smith ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 110457b952d6SSatish Balay ierr = VecScatterView(baij->Mvctx,viewer);CHKERRQ(ierr); 11053a40ed3dSBarry Smith PetscFunctionReturn(0); 1106fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_INFO) { 1107b0a32e0cSBarry Smith ierr = PetscViewerASCIIPrintf(viewer," block size is %d\n",bs);CHKERRQ(ierr); 11083a40ed3dSBarry Smith PetscFunctionReturn(0); 110957b952d6SSatish Balay } 111057b952d6SSatish Balay } 111157b952d6SSatish Balay 11120f5bd95cSBarry Smith if (isdraw) { 1113b0a32e0cSBarry Smith PetscDraw draw; 111457b952d6SSatish Balay PetscTruth isnull; 1115b0a32e0cSBarry Smith ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr); 1116b0a32e0cSBarry Smith ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); if (isnull) PetscFunctionReturn(0); 111757b952d6SSatish Balay } 111857b952d6SSatish Balay 111957b952d6SSatish Balay if (size == 1) { 1120873048abSBarry Smith ierr = PetscObjectSetName((PetscObject)baij->A,mat->name);CHKERRQ(ierr); 112157b952d6SSatish Balay ierr = MatView(baij->A,viewer);CHKERRQ(ierr); 1122d64ed03dSBarry Smith } else { 112357b952d6SSatish Balay /* assemble the entire matrix onto first processor. */ 112457b952d6SSatish Balay Mat A; 112557b952d6SSatish Balay Mat_SeqBAIJ *Aloc; 1126273d9f13SBarry Smith int M = mat->M,N = mat->N,*ai,*aj,col,i,j,k,*rvals,mbs = baij->mbs; 11273eda8832SBarry Smith MatScalar *a; 112857b952d6SSatish Balay 112957b952d6SSatish Balay if (!rank) { 113055843e3eSBarry Smith ierr = MatCreateMPIBAIJ(mat->comm,baij->bs,M,N,M,N,0,PETSC_NULL,0,PETSC_NULL,&A);CHKERRQ(ierr); 1131d64ed03dSBarry Smith } else { 113255843e3eSBarry Smith ierr = MatCreateMPIBAIJ(mat->comm,baij->bs,0,0,M,N,0,PETSC_NULL,0,PETSC_NULL,&A);CHKERRQ(ierr); 113357b952d6SSatish Balay } 1134b0a32e0cSBarry Smith PetscLogObjectParent(mat,A); 113557b952d6SSatish Balay 113657b952d6SSatish Balay /* copy over the A part */ 113757b952d6SSatish Balay Aloc = (Mat_SeqBAIJ*)baij->A->data; 113857b952d6SSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 113982502324SSatish Balay ierr = PetscMalloc(bs*sizeof(int),&rvals);CHKERRQ(ierr); 114057b952d6SSatish Balay 114157b952d6SSatish Balay for (i=0; i<mbs; i++) { 114257b952d6SSatish Balay rvals[0] = bs*(baij->rstart + i); 114357b952d6SSatish Balay for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; } 114457b952d6SSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 114557b952d6SSatish Balay col = (baij->cstart+aj[j])*bs; 114657b952d6SSatish Balay for (k=0; k<bs; k++) { 114793fea6afSBarry Smith ierr = MatSetValues_MPIBAIJ_MatScalar(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 1148cee3aa6bSSatish Balay col++; a += bs; 114957b952d6SSatish Balay } 115057b952d6SSatish Balay } 115157b952d6SSatish Balay } 115257b952d6SSatish Balay /* copy over the B part */ 115357b952d6SSatish Balay Aloc = (Mat_SeqBAIJ*)baij->B->data; 115457b952d6SSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 115557b952d6SSatish Balay for (i=0; i<mbs; i++) { 115657b952d6SSatish Balay rvals[0] = bs*(baij->rstart + i); 115757b952d6SSatish Balay for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; } 115857b952d6SSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 115957b952d6SSatish Balay col = baij->garray[aj[j]]*bs; 116057b952d6SSatish Balay for (k=0; k<bs; k++) { 116193fea6afSBarry Smith ierr = MatSetValues_MPIBAIJ_MatScalar(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 1162cee3aa6bSSatish Balay col++; a += bs; 116357b952d6SSatish Balay } 116457b952d6SSatish Balay } 116557b952d6SSatish Balay } 1166606d414cSSatish Balay ierr = PetscFree(rvals);CHKERRQ(ierr); 11676d4a8577SBarry Smith ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 11686d4a8577SBarry Smith ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 116955843e3eSBarry Smith /* 117055843e3eSBarry Smith Everyone has to call to draw the matrix since the graphics waits are 1171b0a32e0cSBarry Smith synchronized across all processors that share the PetscDraw object 117255843e3eSBarry Smith */ 1173b0a32e0cSBarry Smith ierr = PetscViewerGetSingleton(viewer,&sviewer);CHKERRQ(ierr); 1174f14a1c24SBarry Smith if (!rank) { 1175e36acaf3SBarry Smith ierr = PetscObjectSetName((PetscObject)((Mat_MPIBAIJ*)(A->data))->A,mat->name);CHKERRQ(ierr); 11766831982aSBarry Smith ierr = MatView(((Mat_MPIBAIJ*)(A->data))->A,sviewer);CHKERRQ(ierr); 117757b952d6SSatish Balay } 1178b0a32e0cSBarry Smith ierr = PetscViewerRestoreSingleton(viewer,&sviewer);CHKERRQ(ierr); 117957b952d6SSatish Balay ierr = MatDestroy(A);CHKERRQ(ierr); 118057b952d6SSatish Balay } 11813a40ed3dSBarry Smith PetscFunctionReturn(0); 118257b952d6SSatish Balay } 118357b952d6SSatish Balay 11844a2ae208SSatish Balay #undef __FUNCT__ 11854a2ae208SSatish Balay #define __FUNCT__ "MatView_MPIBAIJ" 1186b0a32e0cSBarry Smith int MatView_MPIBAIJ(Mat mat,PetscViewer viewer) 118757b952d6SSatish Balay { 118857b952d6SSatish Balay int ierr; 11896831982aSBarry Smith PetscTruth isascii,isdraw,issocket,isbinary; 119057b952d6SSatish Balay 1191d64ed03dSBarry Smith PetscFunctionBegin; 1192b0a32e0cSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&isascii);CHKERRQ(ierr); 1193fb9695e5SSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr); 1194b0a32e0cSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_SOCKET,&issocket);CHKERRQ(ierr); 1195fb9695e5SSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_BINARY,&isbinary);CHKERRQ(ierr); 11960f5bd95cSBarry Smith if (isascii || isdraw || issocket || isbinary) { 11977b2a1423SBarry Smith ierr = MatView_MPIBAIJ_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr); 11985cd90555SBarry Smith } else { 119929bbc08cSBarry Smith SETERRQ1(1,"Viewer type %s not supported by MPIBAIJ matrices",((PetscObject)viewer)->type_name); 120057b952d6SSatish Balay } 12013a40ed3dSBarry Smith PetscFunctionReturn(0); 120257b952d6SSatish Balay } 120357b952d6SSatish Balay 12044a2ae208SSatish Balay #undef __FUNCT__ 12054a2ae208SSatish Balay #define __FUNCT__ "MatDestroy_MPIBAIJ" 1206e1311b90SBarry Smith int MatDestroy_MPIBAIJ(Mat mat) 120779bdfe76SSatish Balay { 120879bdfe76SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 120979bdfe76SSatish Balay int ierr; 121079bdfe76SSatish Balay 1211d64ed03dSBarry Smith PetscFunctionBegin; 1212aa482453SBarry Smith #if defined(PETSC_USE_LOG) 1213b0a32e0cSBarry Smith PetscLogObjectState((PetscObject)mat,"Rows=%d,Cols=%d",mat->M,mat->N); 121479bdfe76SSatish Balay #endif 12158798bf22SSatish Balay ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr); 12168798bf22SSatish Balay ierr = MatStashDestroy_Private(&mat->bstash);CHKERRQ(ierr); 1217606d414cSSatish Balay ierr = PetscFree(baij->rowners);CHKERRQ(ierr); 121879bdfe76SSatish Balay ierr = MatDestroy(baij->A);CHKERRQ(ierr); 121979bdfe76SSatish Balay ierr = MatDestroy(baij->B);CHKERRQ(ierr); 1220aa482453SBarry Smith #if defined (PETSC_USE_CTABLE) 12210f5bd95cSBarry Smith if (baij->colmap) {ierr = PetscTableDelete(baij->colmap);CHKERRQ(ierr);} 122248e59246SSatish Balay #else 1223606d414cSSatish Balay if (baij->colmap) {ierr = PetscFree(baij->colmap);CHKERRQ(ierr);} 122448e59246SSatish Balay #endif 1225606d414cSSatish Balay if (baij->garray) {ierr = PetscFree(baij->garray);CHKERRQ(ierr);} 1226606d414cSSatish Balay if (baij->lvec) {ierr = VecDestroy(baij->lvec);CHKERRQ(ierr);} 1227606d414cSSatish Balay if (baij->Mvctx) {ierr = VecScatterDestroy(baij->Mvctx);CHKERRQ(ierr);} 1228606d414cSSatish Balay if (baij->rowvalues) {ierr = PetscFree(baij->rowvalues);CHKERRQ(ierr);} 1229606d414cSSatish Balay if (baij->barray) {ierr = PetscFree(baij->barray);CHKERRQ(ierr);} 1230606d414cSSatish Balay if (baij->hd) {ierr = PetscFree(baij->hd);CHKERRQ(ierr);} 12316fa18ffdSBarry Smith #if defined(PETSC_USE_MAT_SINGLE) 12326fa18ffdSBarry Smith if (baij->setvaluescopy) {ierr = PetscFree(baij->setvaluescopy);CHKERRQ(ierr);} 12336fa18ffdSBarry Smith #endif 1234606d414cSSatish Balay ierr = PetscFree(baij);CHKERRQ(ierr); 12353a40ed3dSBarry Smith PetscFunctionReturn(0); 123679bdfe76SSatish Balay } 123779bdfe76SSatish Balay 12384a2ae208SSatish Balay #undef __FUNCT__ 12394a2ae208SSatish Balay #define __FUNCT__ "MatMult_MPIBAIJ" 1240ec1ea8d8SLois Curfman McInnes int MatMult_MPIBAIJ(Mat A,Vec xx,Vec yy) 1241cee3aa6bSSatish Balay { 1242cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 124347b4a8eaSLois Curfman McInnes int ierr,nt; 1244cee3aa6bSSatish Balay 1245d64ed03dSBarry Smith PetscFunctionBegin; 1246e1311b90SBarry Smith ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr); 1247273d9f13SBarry Smith if (nt != A->n) { 124829bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx"); 124947b4a8eaSLois Curfman McInnes } 1250e1311b90SBarry Smith ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr); 1251273d9f13SBarry Smith if (nt != A->m) { 125229bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible parition of A and yy"); 125347b4a8eaSLois Curfman McInnes } 125443a90d84SBarry Smith ierr = VecScatterBegin(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr); 1255f830108cSBarry Smith ierr = (*a->A->ops->mult)(a->A,xx,yy);CHKERRQ(ierr); 125643a90d84SBarry Smith ierr = VecScatterEnd(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr); 1257f830108cSBarry Smith ierr = (*a->B->ops->multadd)(a->B,a->lvec,yy,yy);CHKERRQ(ierr); 125843a90d84SBarry Smith ierr = VecScatterPostRecvs(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr); 12593a40ed3dSBarry Smith PetscFunctionReturn(0); 1260cee3aa6bSSatish Balay } 1261cee3aa6bSSatish Balay 12624a2ae208SSatish Balay #undef __FUNCT__ 12634a2ae208SSatish Balay #define __FUNCT__ "MatMultAdd_MPIBAIJ" 1264ec1ea8d8SLois Curfman McInnes int MatMultAdd_MPIBAIJ(Mat A,Vec xx,Vec yy,Vec zz) 1265cee3aa6bSSatish Balay { 1266cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1267cee3aa6bSSatish Balay int ierr; 1268d64ed03dSBarry Smith 1269d64ed03dSBarry Smith PetscFunctionBegin; 127043a90d84SBarry Smith ierr = VecScatterBegin(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr); 1271f830108cSBarry Smith ierr = (*a->A->ops->multadd)(a->A,xx,yy,zz);CHKERRQ(ierr); 127243a90d84SBarry Smith ierr = VecScatterEnd(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr); 1273f830108cSBarry Smith ierr = (*a->B->ops->multadd)(a->B,a->lvec,zz,zz);CHKERRQ(ierr); 12743a40ed3dSBarry Smith PetscFunctionReturn(0); 1275cee3aa6bSSatish Balay } 1276cee3aa6bSSatish Balay 12774a2ae208SSatish Balay #undef __FUNCT__ 12784a2ae208SSatish Balay #define __FUNCT__ "MatMultTranspose_MPIBAIJ" 12797c922b88SBarry Smith int MatMultTranspose_MPIBAIJ(Mat A,Vec xx,Vec yy) 1280cee3aa6bSSatish Balay { 1281cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1282cee3aa6bSSatish Balay int ierr; 1283cee3aa6bSSatish Balay 1284d64ed03dSBarry Smith PetscFunctionBegin; 1285cee3aa6bSSatish Balay /* do nondiagonal part */ 12867c922b88SBarry Smith ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr); 1287cee3aa6bSSatish Balay /* send it on its way */ 1288537820f0SBarry Smith ierr = VecScatterBegin(a->lvec,yy,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr); 1289cee3aa6bSSatish Balay /* do local part */ 12907c922b88SBarry Smith ierr = (*a->A->ops->multtranspose)(a->A,xx,yy);CHKERRQ(ierr); 1291cee3aa6bSSatish Balay /* receive remote parts: note this assumes the values are not actually */ 1292cee3aa6bSSatish Balay /* inserted in yy until the next line, which is true for my implementation*/ 1293cee3aa6bSSatish Balay /* but is not perhaps always true. */ 1294639f9d9dSBarry Smith ierr = VecScatterEnd(a->lvec,yy,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr); 12953a40ed3dSBarry Smith PetscFunctionReturn(0); 1296cee3aa6bSSatish Balay } 1297cee3aa6bSSatish Balay 12984a2ae208SSatish Balay #undef __FUNCT__ 12994a2ae208SSatish Balay #define __FUNCT__ "MatMultTransposeAdd_MPIBAIJ" 13007c922b88SBarry Smith int MatMultTransposeAdd_MPIBAIJ(Mat A,Vec xx,Vec yy,Vec zz) 1301cee3aa6bSSatish Balay { 1302cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1303cee3aa6bSSatish Balay int ierr; 1304cee3aa6bSSatish Balay 1305d64ed03dSBarry Smith PetscFunctionBegin; 1306cee3aa6bSSatish Balay /* do nondiagonal part */ 13077c922b88SBarry Smith ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr); 1308cee3aa6bSSatish Balay /* send it on its way */ 1309537820f0SBarry Smith ierr = VecScatterBegin(a->lvec,zz,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr); 1310cee3aa6bSSatish Balay /* do local part */ 13117c922b88SBarry Smith ierr = (*a->A->ops->multtransposeadd)(a->A,xx,yy,zz);CHKERRQ(ierr); 1312cee3aa6bSSatish Balay /* receive remote parts: note this assumes the values are not actually */ 1313cee3aa6bSSatish Balay /* inserted in yy until the next line, which is true for my implementation*/ 1314cee3aa6bSSatish Balay /* but is not perhaps always true. */ 1315537820f0SBarry Smith ierr = VecScatterEnd(a->lvec,zz,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr); 13163a40ed3dSBarry Smith PetscFunctionReturn(0); 1317cee3aa6bSSatish Balay } 1318cee3aa6bSSatish Balay 1319cee3aa6bSSatish Balay /* 1320cee3aa6bSSatish Balay This only works correctly for square matrices where the subblock A->A is the 1321cee3aa6bSSatish Balay diagonal block 1322cee3aa6bSSatish Balay */ 13234a2ae208SSatish Balay #undef __FUNCT__ 13244a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonal_MPIBAIJ" 1325ec1ea8d8SLois Curfman McInnes int MatGetDiagonal_MPIBAIJ(Mat A,Vec v) 1326cee3aa6bSSatish Balay { 1327cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 13283a40ed3dSBarry Smith int ierr; 1329d64ed03dSBarry Smith 1330d64ed03dSBarry Smith PetscFunctionBegin; 1331273d9f13SBarry Smith if (A->M != A->N) SETERRQ(PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block"); 13323a40ed3dSBarry Smith ierr = MatGetDiagonal(a->A,v);CHKERRQ(ierr); 13333a40ed3dSBarry Smith PetscFunctionReturn(0); 1334cee3aa6bSSatish Balay } 1335cee3aa6bSSatish Balay 13364a2ae208SSatish Balay #undef __FUNCT__ 13374a2ae208SSatish Balay #define __FUNCT__ "MatScale_MPIBAIJ" 133887828ca2SBarry Smith int MatScale_MPIBAIJ(PetscScalar *aa,Mat A) 1339cee3aa6bSSatish Balay { 1340cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1341cee3aa6bSSatish Balay int ierr; 1342d64ed03dSBarry Smith 1343d64ed03dSBarry Smith PetscFunctionBegin; 1344cee3aa6bSSatish Balay ierr = MatScale(aa,a->A);CHKERRQ(ierr); 1345cee3aa6bSSatish Balay ierr = MatScale(aa,a->B);CHKERRQ(ierr); 13463a40ed3dSBarry Smith PetscFunctionReturn(0); 1347cee3aa6bSSatish Balay } 1348026e39d0SSatish Balay 13494a2ae208SSatish Balay #undef __FUNCT__ 13504a2ae208SSatish Balay #define __FUNCT__ "MatGetRow_MPIBAIJ" 135187828ca2SBarry Smith int MatGetRow_MPIBAIJ(Mat matin,int row,int *nz,int **idx,PetscScalar **v) 1352acdf5bf4SSatish Balay { 1353acdf5bf4SSatish Balay Mat_MPIBAIJ *mat = (Mat_MPIBAIJ*)matin->data; 135487828ca2SBarry Smith PetscScalar *vworkA,*vworkB,**pvA,**pvB,*v_p; 1355acdf5bf4SSatish Balay int bs = mat->bs,bs2 = mat->bs2,i,ierr,*cworkA,*cworkB,**pcA,**pcB; 1356d9d09a02SSatish Balay int nztot,nzA,nzB,lrow,brstart = mat->rstart*bs,brend = mat->rend*bs; 1357d9d09a02SSatish Balay int *cmap,*idx_p,cstart = mat->cstart; 1358acdf5bf4SSatish Balay 1359d64ed03dSBarry Smith PetscFunctionBegin; 136029bbc08cSBarry Smith if (mat->getrowactive == PETSC_TRUE) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Already active"); 1361acdf5bf4SSatish Balay mat->getrowactive = PETSC_TRUE; 1362acdf5bf4SSatish Balay 1363acdf5bf4SSatish Balay if (!mat->rowvalues && (idx || v)) { 1364acdf5bf4SSatish Balay /* 1365acdf5bf4SSatish Balay allocate enough space to hold information from the longest row. 1366acdf5bf4SSatish Balay */ 1367acdf5bf4SSatish Balay Mat_SeqBAIJ *Aa = (Mat_SeqBAIJ*)mat->A->data,*Ba = (Mat_SeqBAIJ*)mat->B->data; 1368bd16c2feSSatish Balay int max = 1,mbs = mat->mbs,tmp; 1369bd16c2feSSatish Balay for (i=0; i<mbs; i++) { 1370acdf5bf4SSatish Balay tmp = Aa->i[i+1] - Aa->i[i] + Ba->i[i+1] - Ba->i[i]; 1371acdf5bf4SSatish Balay if (max < tmp) { max = tmp; } 1372acdf5bf4SSatish Balay } 137387828ca2SBarry Smith ierr = PetscMalloc(max*bs2*(sizeof(int)+sizeof(PetscScalar)),&mat->rowvalues);CHKERRQ(ierr); 1374acdf5bf4SSatish Balay mat->rowindices = (int*)(mat->rowvalues + max*bs2); 1375acdf5bf4SSatish Balay } 1376acdf5bf4SSatish Balay 137729bbc08cSBarry Smith if (row < brstart || row >= brend) SETERRQ(PETSC_ERR_SUP,"Only local rows") 1378d9d09a02SSatish Balay lrow = row - brstart; 1379acdf5bf4SSatish Balay 1380acdf5bf4SSatish Balay pvA = &vworkA; pcA = &cworkA; pvB = &vworkB; pcB = &cworkB; 1381acdf5bf4SSatish Balay if (!v) {pvA = 0; pvB = 0;} 1382acdf5bf4SSatish Balay if (!idx) {pcA = 0; if (!v) pcB = 0;} 1383f830108cSBarry Smith ierr = (*mat->A->ops->getrow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr); 1384f830108cSBarry Smith ierr = (*mat->B->ops->getrow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr); 1385acdf5bf4SSatish Balay nztot = nzA + nzB; 1386acdf5bf4SSatish Balay 1387acdf5bf4SSatish Balay cmap = mat->garray; 1388acdf5bf4SSatish Balay if (v || idx) { 1389acdf5bf4SSatish Balay if (nztot) { 1390acdf5bf4SSatish Balay /* Sort by increasing column numbers, assuming A and B already sorted */ 1391acdf5bf4SSatish Balay int imark = -1; 1392acdf5bf4SSatish Balay if (v) { 1393acdf5bf4SSatish Balay *v = v_p = mat->rowvalues; 1394acdf5bf4SSatish Balay for (i=0; i<nzB; i++) { 1395d9d09a02SSatish Balay if (cmap[cworkB[i]/bs] < cstart) v_p[i] = vworkB[i]; 1396acdf5bf4SSatish Balay else break; 1397acdf5bf4SSatish Balay } 1398acdf5bf4SSatish Balay imark = i; 1399acdf5bf4SSatish Balay for (i=0; i<nzA; i++) v_p[imark+i] = vworkA[i]; 1400acdf5bf4SSatish Balay for (i=imark; i<nzB; i++) v_p[nzA+i] = vworkB[i]; 1401acdf5bf4SSatish Balay } 1402acdf5bf4SSatish Balay if (idx) { 1403acdf5bf4SSatish Balay *idx = idx_p = mat->rowindices; 1404acdf5bf4SSatish Balay if (imark > -1) { 1405acdf5bf4SSatish Balay for (i=0; i<imark; i++) { 1406bd16c2feSSatish Balay idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs; 1407acdf5bf4SSatish Balay } 1408acdf5bf4SSatish Balay } else { 1409acdf5bf4SSatish Balay for (i=0; i<nzB; i++) { 1410d9d09a02SSatish Balay if (cmap[cworkB[i]/bs] < cstart) 1411d9d09a02SSatish Balay idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ; 1412acdf5bf4SSatish Balay else break; 1413acdf5bf4SSatish Balay } 1414acdf5bf4SSatish Balay imark = i; 1415acdf5bf4SSatish Balay } 1416d9d09a02SSatish Balay for (i=0; i<nzA; i++) idx_p[imark+i] = cstart*bs + cworkA[i]; 1417d9d09a02SSatish Balay for (i=imark; i<nzB; i++) idx_p[nzA+i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ; 1418acdf5bf4SSatish Balay } 1419d64ed03dSBarry Smith } else { 1420d212a18eSSatish Balay if (idx) *idx = 0; 1421d212a18eSSatish Balay if (v) *v = 0; 1422d212a18eSSatish Balay } 1423acdf5bf4SSatish Balay } 1424acdf5bf4SSatish Balay *nz = nztot; 1425f830108cSBarry Smith ierr = (*mat->A->ops->restorerow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr); 1426f830108cSBarry Smith ierr = (*mat->B->ops->restorerow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr); 14273a40ed3dSBarry Smith PetscFunctionReturn(0); 1428acdf5bf4SSatish Balay } 1429acdf5bf4SSatish Balay 14304a2ae208SSatish Balay #undef __FUNCT__ 14314a2ae208SSatish Balay #define __FUNCT__ "MatRestoreRow_MPIBAIJ" 143287828ca2SBarry Smith int MatRestoreRow_MPIBAIJ(Mat mat,int row,int *nz,int **idx,PetscScalar **v) 1433acdf5bf4SSatish Balay { 1434acdf5bf4SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 1435d64ed03dSBarry Smith 1436d64ed03dSBarry Smith PetscFunctionBegin; 1437acdf5bf4SSatish Balay if (baij->getrowactive == PETSC_FALSE) { 143829bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"MatGetRow not called"); 1439acdf5bf4SSatish Balay } 1440acdf5bf4SSatish Balay baij->getrowactive = PETSC_FALSE; 14413a40ed3dSBarry Smith PetscFunctionReturn(0); 1442acdf5bf4SSatish Balay } 1443acdf5bf4SSatish Balay 14444a2ae208SSatish Balay #undef __FUNCT__ 14454a2ae208SSatish Balay #define __FUNCT__ "MatGetBlockSize_MPIBAIJ" 1446ec1ea8d8SLois Curfman McInnes int MatGetBlockSize_MPIBAIJ(Mat mat,int *bs) 14475a838052SSatish Balay { 14485a838052SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 1449d64ed03dSBarry Smith 1450d64ed03dSBarry Smith PetscFunctionBegin; 14515a838052SSatish Balay *bs = baij->bs; 14523a40ed3dSBarry Smith PetscFunctionReturn(0); 14535a838052SSatish Balay } 14545a838052SSatish Balay 14554a2ae208SSatish Balay #undef __FUNCT__ 14564a2ae208SSatish Balay #define __FUNCT__ "MatZeroEntries_MPIBAIJ" 1457ec1ea8d8SLois Curfman McInnes int MatZeroEntries_MPIBAIJ(Mat A) 145858667388SSatish Balay { 145958667388SSatish Balay Mat_MPIBAIJ *l = (Mat_MPIBAIJ*)A->data; 146058667388SSatish Balay int ierr; 1461d64ed03dSBarry Smith 1462d64ed03dSBarry Smith PetscFunctionBegin; 146358667388SSatish Balay ierr = MatZeroEntries(l->A);CHKERRQ(ierr); 146458667388SSatish Balay ierr = MatZeroEntries(l->B);CHKERRQ(ierr); 14653a40ed3dSBarry Smith PetscFunctionReturn(0); 146658667388SSatish Balay } 14670ac07820SSatish Balay 14684a2ae208SSatish Balay #undef __FUNCT__ 14694a2ae208SSatish Balay #define __FUNCT__ "MatGetInfo_MPIBAIJ" 1470ec1ea8d8SLois Curfman McInnes int MatGetInfo_MPIBAIJ(Mat matin,MatInfoType flag,MatInfo *info) 14710ac07820SSatish Balay { 14724e220ebcSLois Curfman McInnes Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)matin->data; 14734e220ebcSLois Curfman McInnes Mat A = a->A,B = a->B; 14747d57db60SLois Curfman McInnes int ierr; 1475329f5518SBarry Smith PetscReal isend[5],irecv[5]; 14760ac07820SSatish Balay 1477d64ed03dSBarry Smith PetscFunctionBegin; 1478f6275e2eSBarry Smith info->block_size = (PetscReal)a->bs; 14794e220ebcSLois Curfman McInnes ierr = MatGetInfo(A,MAT_LOCAL,info);CHKERRQ(ierr); 14800e4b21beSBarry Smith isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded; 1481de87f314SBarry Smith isend[3] = info->memory; isend[4] = info->mallocs; 14824e220ebcSLois Curfman McInnes ierr = MatGetInfo(B,MAT_LOCAL,info);CHKERRQ(ierr); 14830e4b21beSBarry Smith isend[0] += info->nz_used; isend[1] += info->nz_allocated; isend[2] += info->nz_unneeded; 1484de87f314SBarry Smith isend[3] += info->memory; isend[4] += info->mallocs; 14850ac07820SSatish Balay if (flag == MAT_LOCAL) { 14864e220ebcSLois Curfman McInnes info->nz_used = isend[0]; 14874e220ebcSLois Curfman McInnes info->nz_allocated = isend[1]; 14884e220ebcSLois Curfman McInnes info->nz_unneeded = isend[2]; 14894e220ebcSLois Curfman McInnes info->memory = isend[3]; 14904e220ebcSLois Curfman McInnes info->mallocs = isend[4]; 14910ac07820SSatish Balay } else if (flag == MAT_GLOBAL_MAX) { 1492d7d1e502SBarry Smith ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_MAX,matin->comm);CHKERRQ(ierr); 14934e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 14944e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 14954e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 14964e220ebcSLois Curfman McInnes info->memory = irecv[3]; 14974e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 14980ac07820SSatish Balay } else if (flag == MAT_GLOBAL_SUM) { 1499d7d1e502SBarry Smith ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_SUM,matin->comm);CHKERRQ(ierr); 15004e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 15014e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 15024e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 15034e220ebcSLois Curfman McInnes info->memory = irecv[3]; 15044e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 1505d41123aaSBarry Smith } else { 150629bbc08cSBarry Smith SETERRQ1(1,"Unknown MatInfoType argument %d",flag); 15070ac07820SSatish Balay } 1508f6275e2eSBarry Smith info->rows_global = (PetscReal)A->M; 1509f6275e2eSBarry Smith info->columns_global = (PetscReal)A->N; 1510f6275e2eSBarry Smith info->rows_local = (PetscReal)A->m; 1511f6275e2eSBarry Smith info->columns_local = (PetscReal)A->N; 15124e220ebcSLois Curfman McInnes info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */ 15134e220ebcSLois Curfman McInnes info->fill_ratio_needed = 0; 15144e220ebcSLois Curfman McInnes info->factor_mallocs = 0; 15153a40ed3dSBarry Smith PetscFunctionReturn(0); 15160ac07820SSatish Balay } 15170ac07820SSatish Balay 15184a2ae208SSatish Balay #undef __FUNCT__ 15194a2ae208SSatish Balay #define __FUNCT__ "MatSetOption_MPIBAIJ" 1520ec1ea8d8SLois Curfman McInnes int MatSetOption_MPIBAIJ(Mat A,MatOption op) 152158667388SSatish Balay { 152258667388SSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 152398305bb5SBarry Smith int ierr; 152458667388SSatish Balay 1525d64ed03dSBarry Smith PetscFunctionBegin; 152612c028f9SKris Buschelman switch (op) { 152712c028f9SKris Buschelman case MAT_NO_NEW_NONZERO_LOCATIONS: 152812c028f9SKris Buschelman case MAT_YES_NEW_NONZERO_LOCATIONS: 152912c028f9SKris Buschelman case MAT_COLUMNS_UNSORTED: 153012c028f9SKris Buschelman case MAT_COLUMNS_SORTED: 153112c028f9SKris Buschelman case MAT_NEW_NONZERO_ALLOCATION_ERR: 153212c028f9SKris Buschelman case MAT_KEEP_ZEROED_ROWS: 153312c028f9SKris Buschelman case MAT_NEW_NONZERO_LOCATION_ERR: 153498305bb5SBarry Smith ierr = MatSetOption(a->A,op);CHKERRQ(ierr); 153598305bb5SBarry Smith ierr = MatSetOption(a->B,op);CHKERRQ(ierr); 153612c028f9SKris Buschelman break; 153712c028f9SKris Buschelman case MAT_ROW_ORIENTED: 15387c922b88SBarry Smith a->roworiented = PETSC_TRUE; 153998305bb5SBarry Smith ierr = MatSetOption(a->A,op);CHKERRQ(ierr); 154098305bb5SBarry Smith ierr = MatSetOption(a->B,op);CHKERRQ(ierr); 154112c028f9SKris Buschelman break; 154212c028f9SKris Buschelman case MAT_ROWS_SORTED: 154312c028f9SKris Buschelman case MAT_ROWS_UNSORTED: 154412c028f9SKris Buschelman case MAT_YES_NEW_DIAGONALS: 1545d03495bdSKris Buschelman case MAT_USE_SINGLE_PRECISION_SOLVES: 1546b0a32e0cSBarry Smith PetscLogInfo(A,"Info:MatSetOption_MPIBAIJ:Option ignored\n"); 154712c028f9SKris Buschelman break; 154812c028f9SKris Buschelman case MAT_COLUMN_ORIENTED: 15497c922b88SBarry Smith a->roworiented = PETSC_FALSE; 155098305bb5SBarry Smith ierr = MatSetOption(a->A,op);CHKERRQ(ierr); 155198305bb5SBarry Smith ierr = MatSetOption(a->B,op);CHKERRQ(ierr); 155212c028f9SKris Buschelman break; 155312c028f9SKris Buschelman case MAT_IGNORE_OFF_PROC_ENTRIES: 15547c922b88SBarry Smith a->donotstash = PETSC_TRUE; 155512c028f9SKris Buschelman break; 155612c028f9SKris Buschelman case MAT_NO_NEW_DIAGONALS: 155729bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"MAT_NO_NEW_DIAGONALS"); 155812c028f9SKris Buschelman case MAT_USE_HASH_TABLE: 15597c922b88SBarry Smith a->ht_flag = PETSC_TRUE; 156012c028f9SKris Buschelman break; 156112c028f9SKris Buschelman default: 156229bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"unknown option"); 1563d64ed03dSBarry Smith } 15643a40ed3dSBarry Smith PetscFunctionReturn(0); 156558667388SSatish Balay } 156658667388SSatish Balay 15674a2ae208SSatish Balay #undef __FUNCT__ 15684a2ae208SSatish Balay #define __FUNCT__ "MatTranspose_MPIBAIJ(" 1569ec1ea8d8SLois Curfman McInnes int MatTranspose_MPIBAIJ(Mat A,Mat *matout) 15700ac07820SSatish Balay { 15710ac07820SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)A->data; 15720ac07820SSatish Balay Mat_SeqBAIJ *Aloc; 15730ac07820SSatish Balay Mat B; 1574273d9f13SBarry Smith int ierr,M=A->M,N=A->N,*ai,*aj,i,*rvals,j,k,col; 15750ac07820SSatish Balay int bs=baij->bs,mbs=baij->mbs; 15763eda8832SBarry Smith MatScalar *a; 15770ac07820SSatish Balay 1578d64ed03dSBarry Smith PetscFunctionBegin; 157929bbc08cSBarry Smith if (!matout && M != N) SETERRQ(PETSC_ERR_ARG_SIZ,"Square matrix only for in-place"); 1580273d9f13SBarry Smith ierr = MatCreateMPIBAIJ(A->comm,baij->bs,A->n,A->m,N,M,0,PETSC_NULL,0,PETSC_NULL,&B);CHKERRQ(ierr); 15810ac07820SSatish Balay 15820ac07820SSatish Balay /* copy over the A part */ 15830ac07820SSatish Balay Aloc = (Mat_SeqBAIJ*)baij->A->data; 15840ac07820SSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 158582502324SSatish Balay ierr = PetscMalloc(bs*sizeof(int),&rvals);CHKERRQ(ierr); 15860ac07820SSatish Balay 15870ac07820SSatish Balay for (i=0; i<mbs; i++) { 15880ac07820SSatish Balay rvals[0] = bs*(baij->rstart + i); 15890ac07820SSatish Balay for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; } 15900ac07820SSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 15910ac07820SSatish Balay col = (baij->cstart+aj[j])*bs; 15920ac07820SSatish Balay for (k=0; k<bs; k++) { 159393fea6afSBarry Smith ierr = MatSetValues_MPIBAIJ_MatScalar(B,1,&col,bs,rvals,a,INSERT_VALUES);CHKERRQ(ierr); 15940ac07820SSatish Balay col++; a += bs; 15950ac07820SSatish Balay } 15960ac07820SSatish Balay } 15970ac07820SSatish Balay } 15980ac07820SSatish Balay /* copy over the B part */ 15990ac07820SSatish Balay Aloc = (Mat_SeqBAIJ*)baij->B->data; 16000ac07820SSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 16010ac07820SSatish Balay for (i=0; i<mbs; i++) { 16020ac07820SSatish Balay rvals[0] = bs*(baij->rstart + i); 16030ac07820SSatish Balay for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; } 16040ac07820SSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 16050ac07820SSatish Balay col = baij->garray[aj[j]]*bs; 16060ac07820SSatish Balay for (k=0; k<bs; k++) { 160793fea6afSBarry Smith ierr = MatSetValues_MPIBAIJ_MatScalar(B,1,&col,bs,rvals,a,INSERT_VALUES);CHKERRQ(ierr); 16080ac07820SSatish Balay col++; a += bs; 16090ac07820SSatish Balay } 16100ac07820SSatish Balay } 16110ac07820SSatish Balay } 1612606d414cSSatish Balay ierr = PetscFree(rvals);CHKERRQ(ierr); 16130ac07820SSatish Balay ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 16140ac07820SSatish Balay ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 16150ac07820SSatish Balay 16167c922b88SBarry Smith if (matout) { 16170ac07820SSatish Balay *matout = B; 16180ac07820SSatish Balay } else { 1619273d9f13SBarry Smith ierr = MatHeaderCopy(A,B);CHKERRQ(ierr); 16200ac07820SSatish Balay } 16213a40ed3dSBarry Smith PetscFunctionReturn(0); 16220ac07820SSatish Balay } 16230e95ebc0SSatish Balay 16244a2ae208SSatish Balay #undef __FUNCT__ 16254a2ae208SSatish Balay #define __FUNCT__ "MatDiagonalScale_MPIBAIJ" 162636c4a09eSSatish Balay int MatDiagonalScale_MPIBAIJ(Mat mat,Vec ll,Vec rr) 16270e95ebc0SSatish Balay { 162836c4a09eSSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 162936c4a09eSSatish Balay Mat a = baij->A,b = baij->B; 16300e95ebc0SSatish Balay int ierr,s1,s2,s3; 16310e95ebc0SSatish Balay 1632d64ed03dSBarry Smith PetscFunctionBegin; 163336c4a09eSSatish Balay ierr = MatGetLocalSize(mat,&s2,&s3);CHKERRQ(ierr); 163436c4a09eSSatish Balay if (rr) { 163536c4a09eSSatish Balay ierr = VecGetLocalSize(rr,&s1);CHKERRQ(ierr); 163629bbc08cSBarry Smith if (s1!=s3) SETERRQ(PETSC_ERR_ARG_SIZ,"right vector non-conforming local size"); 163736c4a09eSSatish Balay /* Overlap communication with computation. */ 163836c4a09eSSatish Balay ierr = VecScatterBegin(rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD,baij->Mvctx);CHKERRQ(ierr); 163936c4a09eSSatish Balay } 16400e95ebc0SSatish Balay if (ll) { 16410e95ebc0SSatish Balay ierr = VecGetLocalSize(ll,&s1);CHKERRQ(ierr); 164229bbc08cSBarry Smith if (s1!=s2) SETERRQ(PETSC_ERR_ARG_SIZ,"left vector non-conforming local size"); 1643a21fb8cbSBarry Smith ierr = (*b->ops->diagonalscale)(b,ll,PETSC_NULL);CHKERRQ(ierr); 16440e95ebc0SSatish Balay } 164536c4a09eSSatish Balay /* scale the diagonal block */ 164636c4a09eSSatish Balay ierr = (*a->ops->diagonalscale)(a,ll,rr);CHKERRQ(ierr); 164736c4a09eSSatish Balay 164836c4a09eSSatish Balay if (rr) { 164936c4a09eSSatish Balay /* Do a scatter end and then right scale the off-diagonal block */ 165036c4a09eSSatish Balay ierr = VecScatterEnd(rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD,baij->Mvctx);CHKERRQ(ierr); 1651a21fb8cbSBarry Smith ierr = (*b->ops->diagonalscale)(b,PETSC_NULL,baij->lvec);CHKERRQ(ierr); 165236c4a09eSSatish Balay } 165336c4a09eSSatish Balay 16543a40ed3dSBarry Smith PetscFunctionReturn(0); 16550e95ebc0SSatish Balay } 16560e95ebc0SSatish Balay 16574a2ae208SSatish Balay #undef __FUNCT__ 16584a2ae208SSatish Balay #define __FUNCT__ "MatZeroRows_MPIBAIJ" 165987828ca2SBarry Smith int MatZeroRows_MPIBAIJ(Mat A,IS is,PetscScalar *diag) 16600ac07820SSatish Balay { 16610ac07820SSatish Balay Mat_MPIBAIJ *l = (Mat_MPIBAIJ*)A->data; 16620ac07820SSatish Balay int i,ierr,N,*rows,*owners = l->rowners,size = l->size; 166335d8aa7fSBarry Smith int *procs,*nprocs,j,idx,nsends,*work,row; 16640ac07820SSatish Balay int nmax,*svalues,*starts,*owner,nrecvs,rank = l->rank; 16650ac07820SSatish Balay int *rvalues,tag = A->tag,count,base,slen,n,*source; 1666a07cd24cSSatish Balay int *lens,imdex,*lrows,*values,bs=l->bs,rstart_bs=l->rstart_bs; 16670ac07820SSatish Balay MPI_Comm comm = A->comm; 16680ac07820SSatish Balay MPI_Request *send_waits,*recv_waits; 16690ac07820SSatish Balay MPI_Status recv_status,*send_status; 16700ac07820SSatish Balay IS istmp; 167135d8aa7fSBarry Smith PetscTruth found; 16720ac07820SSatish Balay 1673d64ed03dSBarry Smith PetscFunctionBegin; 1674f14a1c24SBarry Smith ierr = ISGetLocalSize(is,&N);CHKERRQ(ierr); 16750ac07820SSatish Balay ierr = ISGetIndices(is,&rows);CHKERRQ(ierr); 16760ac07820SSatish Balay 16770ac07820SSatish Balay /* first count number of contributors to each processor */ 167882502324SSatish Balay ierr = PetscMalloc(2*size*sizeof(int),&nprocs);CHKERRQ(ierr); 1679549d3d68SSatish Balay ierr = PetscMemzero(nprocs,2*size*sizeof(int));CHKERRQ(ierr); 1680549d3d68SSatish Balay procs = nprocs + size; 1681b0a32e0cSBarry Smith ierr = PetscMalloc((N+1)*sizeof(int),&owner);CHKERRQ(ierr); /* see note*/ 16820ac07820SSatish Balay for (i=0; i<N; i++) { 16830ac07820SSatish Balay idx = rows[i]; 168435d8aa7fSBarry Smith found = PETSC_FALSE; 16850ac07820SSatish Balay for (j=0; j<size; j++) { 16860ac07820SSatish Balay if (idx >= owners[j]*bs && idx < owners[j+1]*bs) { 168735d8aa7fSBarry Smith nprocs[j]++; procs[j] = 1; owner[i] = j; found = PETSC_TRUE; break; 16880ac07820SSatish Balay } 16890ac07820SSatish Balay } 169029bbc08cSBarry Smith if (!found) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Index out of range"); 16910ac07820SSatish Balay } 16920ac07820SSatish Balay nsends = 0; for (i=0; i<size; i++) { nsends += procs[i];} 16930ac07820SSatish Balay 16940ac07820SSatish Balay /* inform other processors of number of messages and max length*/ 169582502324SSatish Balay ierr = PetscMalloc(2*size*sizeof(int),&work);CHKERRQ(ierr); 16966831982aSBarry Smith ierr = MPI_Allreduce(nprocs,work,2*size,MPI_INT,PetscMaxSum_Op,comm);CHKERRQ(ierr); 16970ac07820SSatish Balay nmax = work[rank]; 16986831982aSBarry Smith nrecvs = work[size+rank]; 1699606d414cSSatish Balay ierr = PetscFree(work);CHKERRQ(ierr); 17000ac07820SSatish Balay 17010ac07820SSatish Balay /* post receives: */ 1702b0a32e0cSBarry Smith ierr = PetscMalloc((nrecvs+1)*(nmax+1)*sizeof(int),&rvalues);CHKERRQ(ierr); 1703b0a32e0cSBarry Smith ierr = PetscMalloc((nrecvs+1)*sizeof(MPI_Request),&recv_waits);CHKERRQ(ierr); 17040ac07820SSatish Balay for (i=0; i<nrecvs; i++) { 1705ca161407SBarry Smith ierr = MPI_Irecv(rvalues+nmax*i,nmax,MPI_INT,MPI_ANY_SOURCE,tag,comm,recv_waits+i);CHKERRQ(ierr); 17060ac07820SSatish Balay } 17070ac07820SSatish Balay 17080ac07820SSatish Balay /* do sends: 17090ac07820SSatish Balay 1) starts[i] gives the starting index in svalues for stuff going to 17100ac07820SSatish Balay the ith processor 17110ac07820SSatish Balay */ 1712b0a32e0cSBarry Smith ierr = PetscMalloc((N+1)*sizeof(int),&svalues);CHKERRQ(ierr); 1713b0a32e0cSBarry Smith ierr = PetscMalloc((nsends+1)*sizeof(MPI_Request),&send_waits);CHKERRQ(ierr); 1714b0a32e0cSBarry Smith ierr = PetscMalloc((size+1)*sizeof(int),&starts);CHKERRQ(ierr); 17150ac07820SSatish Balay starts[0] = 0; 17160ac07820SSatish Balay for (i=1; i<size; i++) { starts[i] = starts[i-1] + nprocs[i-1];} 17170ac07820SSatish Balay for (i=0; i<N; i++) { 17180ac07820SSatish Balay svalues[starts[owner[i]]++] = rows[i]; 17190ac07820SSatish Balay } 17206831982aSBarry Smith ierr = ISRestoreIndices(is,&rows);CHKERRQ(ierr); 17210ac07820SSatish Balay 17220ac07820SSatish Balay starts[0] = 0; 17230ac07820SSatish Balay for (i=1; i<size+1; i++) { starts[i] = starts[i-1] + nprocs[i-1];} 17240ac07820SSatish Balay count = 0; 17250ac07820SSatish Balay for (i=0; i<size; i++) { 17260ac07820SSatish Balay if (procs[i]) { 1727ca161407SBarry Smith ierr = MPI_Isend(svalues+starts[i],nprocs[i],MPI_INT,i,tag,comm,send_waits+count++);CHKERRQ(ierr); 17280ac07820SSatish Balay } 17290ac07820SSatish Balay } 1730606d414cSSatish Balay ierr = PetscFree(starts);CHKERRQ(ierr); 17310ac07820SSatish Balay 17320ac07820SSatish Balay base = owners[rank]*bs; 17330ac07820SSatish Balay 17340ac07820SSatish Balay /* wait on receives */ 1735b0a32e0cSBarry Smith ierr = PetscMalloc(2*(nrecvs+1)*sizeof(int),&lens);CHKERRQ(ierr); 17360ac07820SSatish Balay source = lens + nrecvs; 17370ac07820SSatish Balay count = nrecvs; slen = 0; 17380ac07820SSatish Balay while (count) { 1739ca161407SBarry Smith ierr = MPI_Waitany(nrecvs,recv_waits,&imdex,&recv_status);CHKERRQ(ierr); 17400ac07820SSatish Balay /* unpack receives into our local space */ 1741ca161407SBarry Smith ierr = MPI_Get_count(&recv_status,MPI_INT,&n);CHKERRQ(ierr); 17420ac07820SSatish Balay source[imdex] = recv_status.MPI_SOURCE; 17430ac07820SSatish Balay lens[imdex] = n; 17440ac07820SSatish Balay slen += n; 17450ac07820SSatish Balay count--; 17460ac07820SSatish Balay } 1747606d414cSSatish Balay ierr = PetscFree(recv_waits);CHKERRQ(ierr); 17480ac07820SSatish Balay 17490ac07820SSatish Balay /* move the data into the send scatter */ 1750b0a32e0cSBarry Smith ierr = PetscMalloc((slen+1)*sizeof(int),&lrows);CHKERRQ(ierr); 17510ac07820SSatish Balay count = 0; 17520ac07820SSatish Balay for (i=0; i<nrecvs; i++) { 17530ac07820SSatish Balay values = rvalues + i*nmax; 17540ac07820SSatish Balay for (j=0; j<lens[i]; j++) { 17550ac07820SSatish Balay lrows[count++] = values[j] - base; 17560ac07820SSatish Balay } 17570ac07820SSatish Balay } 1758606d414cSSatish Balay ierr = PetscFree(rvalues);CHKERRQ(ierr); 1759606d414cSSatish Balay ierr = PetscFree(lens);CHKERRQ(ierr); 1760606d414cSSatish Balay ierr = PetscFree(owner);CHKERRQ(ierr); 1761606d414cSSatish Balay ierr = PetscFree(nprocs);CHKERRQ(ierr); 17620ac07820SSatish Balay 17630ac07820SSatish Balay /* actually zap the local rows */ 1764029af93fSBarry Smith ierr = ISCreateGeneral(PETSC_COMM_SELF,slen,lrows,&istmp);CHKERRQ(ierr); 1765b0a32e0cSBarry Smith PetscLogObjectParent(A,istmp); 1766a07cd24cSSatish Balay 176772dacd9aSBarry Smith /* 176872dacd9aSBarry Smith Zero the required rows. If the "diagonal block" of the matrix 176972dacd9aSBarry Smith is square and the user wishes to set the diagonal we use seperate 177072dacd9aSBarry Smith code so that MatSetValues() is not called for each diagonal allocating 177172dacd9aSBarry Smith new memory, thus calling lots of mallocs and slowing things down. 177272dacd9aSBarry Smith 177372dacd9aSBarry Smith Contributed by: Mathew Knepley 177472dacd9aSBarry Smith */ 17759c957beeSSatish Balay /* must zero l->B before l->A because the (diag) case below may put values into l->B*/ 17766fa18ffdSBarry Smith ierr = MatZeroRows_SeqBAIJ(l->B,istmp,0);CHKERRQ(ierr); 17779c957beeSSatish Balay if (diag && (l->A->M == l->A->N)) { 17786fa18ffdSBarry Smith ierr = MatZeroRows_SeqBAIJ(l->A,istmp,diag);CHKERRQ(ierr); 17799c957beeSSatish Balay } else if (diag) { 17806fa18ffdSBarry Smith ierr = MatZeroRows_SeqBAIJ(l->A,istmp,0);CHKERRQ(ierr); 1781fa46199cSSatish Balay if (((Mat_SeqBAIJ*)l->A->data)->nonew) { 178229bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"MatZeroRows() on rectangular matrices cannot be used with the Mat options \n\ 1783fa46199cSSatish Balay MAT_NO_NEW_NONZERO_LOCATIONS,MAT_NEW_NONZERO_LOCATION_ERR,MAT_NEW_NONZERO_ALLOCATION_ERR"); 17846525c446SSatish Balay } 1785a07cd24cSSatish Balay for (i=0; i<slen; i++) { 1786a07cd24cSSatish Balay row = lrows[i] + rstart_bs; 17873f11ea53SBarry Smith ierr = MatSetValues(A,1,&row,1,&row,diag,INSERT_VALUES);CHKERRQ(ierr); 1788a07cd24cSSatish Balay } 1789a07cd24cSSatish Balay ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 1790a07cd24cSSatish Balay ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 17919c957beeSSatish Balay } else { 17926fa18ffdSBarry Smith ierr = MatZeroRows_SeqBAIJ(l->A,istmp,0);CHKERRQ(ierr); 1793a07cd24cSSatish Balay } 17949c957beeSSatish Balay 17959c957beeSSatish Balay ierr = ISDestroy(istmp);CHKERRQ(ierr); 1796606d414cSSatish Balay ierr = PetscFree(lrows);CHKERRQ(ierr); 1797a07cd24cSSatish Balay 17980ac07820SSatish Balay /* wait on sends */ 17990ac07820SSatish Balay if (nsends) { 180082502324SSatish Balay ierr = PetscMalloc(nsends*sizeof(MPI_Status),&send_status);CHKERRQ(ierr); 1801ca161407SBarry Smith ierr = MPI_Waitall(nsends,send_waits,send_status);CHKERRQ(ierr); 1802606d414cSSatish Balay ierr = PetscFree(send_status);CHKERRQ(ierr); 18030ac07820SSatish Balay } 1804606d414cSSatish Balay ierr = PetscFree(send_waits);CHKERRQ(ierr); 1805606d414cSSatish Balay ierr = PetscFree(svalues);CHKERRQ(ierr); 18060ac07820SSatish Balay 18073a40ed3dSBarry Smith PetscFunctionReturn(0); 18080ac07820SSatish Balay } 180972dacd9aSBarry Smith 18104a2ae208SSatish Balay #undef __FUNCT__ 18114a2ae208SSatish Balay #define __FUNCT__ "MatPrintHelp_MPIBAIJ" 1812ec1ea8d8SLois Curfman McInnes int MatPrintHelp_MPIBAIJ(Mat A) 1813ba4ca20aSSatish Balay { 1814ba4ca20aSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 181525fdafccSSatish Balay MPI_Comm comm = A->comm; 1816133cdb44SSatish Balay static int called = 0; 18173a40ed3dSBarry Smith int ierr; 1818ba4ca20aSSatish Balay 1819d64ed03dSBarry Smith PetscFunctionBegin; 18203a40ed3dSBarry Smith if (!a->rank) { 18213a40ed3dSBarry Smith ierr = MatPrintHelp_SeqBAIJ(a->A);CHKERRQ(ierr); 182225fdafccSSatish Balay } 182325fdafccSSatish Balay if (called) {PetscFunctionReturn(0);} else called = 1; 1824d132466eSBarry Smith ierr = (*PetscHelpPrintf)(comm," Options for MATMPIBAIJ matrix format (the defaults):\n");CHKERRQ(ierr); 1825d132466eSBarry Smith ierr = (*PetscHelpPrintf)(comm," -mat_use_hash_table <factor>: Use hashtable for efficient matrix assembly\n");CHKERRQ(ierr); 18263a40ed3dSBarry Smith PetscFunctionReturn(0); 1827ba4ca20aSSatish Balay } 18280ac07820SSatish Balay 18294a2ae208SSatish Balay #undef __FUNCT__ 18304a2ae208SSatish Balay #define __FUNCT__ "MatSetUnfactored_MPIBAIJ" 1831ec1ea8d8SLois Curfman McInnes int MatSetUnfactored_MPIBAIJ(Mat A) 1832bb5a7306SBarry Smith { 1833bb5a7306SBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1834bb5a7306SBarry Smith int ierr; 1835d64ed03dSBarry Smith 1836d64ed03dSBarry Smith PetscFunctionBegin; 1837bb5a7306SBarry Smith ierr = MatSetUnfactored(a->A);CHKERRQ(ierr); 18383a40ed3dSBarry Smith PetscFunctionReturn(0); 1839bb5a7306SBarry Smith } 1840bb5a7306SBarry Smith 18412e8a6d31SBarry Smith static int MatDuplicate_MPIBAIJ(Mat,MatDuplicateOption,Mat *); 18420ac07820SSatish Balay 18434a2ae208SSatish Balay #undef __FUNCT__ 18444a2ae208SSatish Balay #define __FUNCT__ "MatEqual_MPIBAIJ" 18457fc3c18eSBarry Smith int MatEqual_MPIBAIJ(Mat A,Mat B,PetscTruth *flag) 18467fc3c18eSBarry Smith { 18477fc3c18eSBarry Smith Mat_MPIBAIJ *matB = (Mat_MPIBAIJ*)B->data,*matA = (Mat_MPIBAIJ*)A->data; 18487fc3c18eSBarry Smith Mat a,b,c,d; 18497fc3c18eSBarry Smith PetscTruth flg; 18507fc3c18eSBarry Smith int ierr; 18517fc3c18eSBarry Smith 18527fc3c18eSBarry Smith PetscFunctionBegin; 1853273d9f13SBarry Smith ierr = PetscTypeCompare((PetscObject)B,MATMPIBAIJ,&flg);CHKERRQ(ierr); 1854273d9f13SBarry Smith if (!flg) SETERRQ(PETSC_ERR_ARG_INCOMP,"Matrices must be same type"); 18557fc3c18eSBarry Smith a = matA->A; b = matA->B; 18567fc3c18eSBarry Smith c = matB->A; d = matB->B; 18577fc3c18eSBarry Smith 18587fc3c18eSBarry Smith ierr = MatEqual(a,c,&flg);CHKERRQ(ierr); 18597fc3c18eSBarry Smith if (flg == PETSC_TRUE) { 18607fc3c18eSBarry Smith ierr = MatEqual(b,d,&flg);CHKERRQ(ierr); 18617fc3c18eSBarry Smith } 18627fc3c18eSBarry Smith ierr = MPI_Allreduce(&flg,flag,1,MPI_INT,MPI_LAND,A->comm);CHKERRQ(ierr); 18637fc3c18eSBarry Smith PetscFunctionReturn(0); 18647fc3c18eSBarry Smith } 18657fc3c18eSBarry Smith 1866273d9f13SBarry Smith 18674a2ae208SSatish Balay #undef __FUNCT__ 18684a2ae208SSatish Balay #define __FUNCT__ "MatSetUpPreallocation_MPIBAIJ" 1869273d9f13SBarry Smith int MatSetUpPreallocation_MPIBAIJ(Mat A) 1870273d9f13SBarry Smith { 1871273d9f13SBarry Smith int ierr; 1872273d9f13SBarry Smith 1873273d9f13SBarry Smith PetscFunctionBegin; 1874273d9f13SBarry Smith ierr = MatMPIBAIJSetPreallocation(A,1,PETSC_DEFAULT,0,PETSC_DEFAULT,0);CHKERRQ(ierr); 1875273d9f13SBarry Smith PetscFunctionReturn(0); 1876273d9f13SBarry Smith } 1877273d9f13SBarry Smith 187879bdfe76SSatish Balay /* -------------------------------------------------------------------*/ 1879cc2dc46cSBarry Smith static struct _MatOps MatOps_Values = { 1880cc2dc46cSBarry Smith MatSetValues_MPIBAIJ, 1881cc2dc46cSBarry Smith MatGetRow_MPIBAIJ, 1882cc2dc46cSBarry Smith MatRestoreRow_MPIBAIJ, 1883cc2dc46cSBarry Smith MatMult_MPIBAIJ, 1884cc2dc46cSBarry Smith MatMultAdd_MPIBAIJ, 18857c922b88SBarry Smith MatMultTranspose_MPIBAIJ, 18867c922b88SBarry Smith MatMultTransposeAdd_MPIBAIJ, 1887cc2dc46cSBarry Smith 0, 1888cc2dc46cSBarry Smith 0, 1889cc2dc46cSBarry Smith 0, 1890cc2dc46cSBarry Smith 0, 1891cc2dc46cSBarry Smith 0, 1892cc2dc46cSBarry Smith 0, 1893cc2dc46cSBarry Smith 0, 1894cc2dc46cSBarry Smith MatTranspose_MPIBAIJ, 1895cc2dc46cSBarry Smith MatGetInfo_MPIBAIJ, 18967fc3c18eSBarry Smith MatEqual_MPIBAIJ, 1897cc2dc46cSBarry Smith MatGetDiagonal_MPIBAIJ, 1898cc2dc46cSBarry Smith MatDiagonalScale_MPIBAIJ, 1899cc2dc46cSBarry Smith MatNorm_MPIBAIJ, 1900cc2dc46cSBarry Smith MatAssemblyBegin_MPIBAIJ, 1901cc2dc46cSBarry Smith MatAssemblyEnd_MPIBAIJ, 1902cc2dc46cSBarry Smith 0, 1903cc2dc46cSBarry Smith MatSetOption_MPIBAIJ, 1904cc2dc46cSBarry Smith MatZeroEntries_MPIBAIJ, 1905cc2dc46cSBarry Smith MatZeroRows_MPIBAIJ, 1906cc2dc46cSBarry Smith 0, 1907cc2dc46cSBarry Smith 0, 1908cc2dc46cSBarry Smith 0, 1909cc2dc46cSBarry Smith 0, 1910273d9f13SBarry Smith MatSetUpPreallocation_MPIBAIJ, 1911273d9f13SBarry Smith 0, 1912cc2dc46cSBarry Smith 0, 1913cc2dc46cSBarry Smith 0, 1914cc2dc46cSBarry Smith 0, 19152e8a6d31SBarry Smith MatDuplicate_MPIBAIJ, 1916cc2dc46cSBarry Smith 0, 1917cc2dc46cSBarry Smith 0, 1918cc2dc46cSBarry Smith 0, 1919cc2dc46cSBarry Smith 0, 1920cc2dc46cSBarry Smith 0, 1921cc2dc46cSBarry Smith MatGetSubMatrices_MPIBAIJ, 1922cc2dc46cSBarry Smith MatIncreaseOverlap_MPIBAIJ, 1923cc2dc46cSBarry Smith MatGetValues_MPIBAIJ, 1924cc2dc46cSBarry Smith 0, 1925cc2dc46cSBarry Smith MatPrintHelp_MPIBAIJ, 1926cc2dc46cSBarry Smith MatScale_MPIBAIJ, 1927cc2dc46cSBarry Smith 0, 1928cc2dc46cSBarry Smith 0, 1929cc2dc46cSBarry Smith 0, 1930cc2dc46cSBarry Smith MatGetBlockSize_MPIBAIJ, 1931cc2dc46cSBarry Smith 0, 1932cc2dc46cSBarry Smith 0, 1933cc2dc46cSBarry Smith 0, 1934cc2dc46cSBarry Smith 0, 1935cc2dc46cSBarry Smith 0, 1936cc2dc46cSBarry Smith 0, 1937cc2dc46cSBarry Smith MatSetUnfactored_MPIBAIJ, 1938cc2dc46cSBarry Smith 0, 1939cc2dc46cSBarry Smith MatSetValuesBlocked_MPIBAIJ, 1940cc2dc46cSBarry Smith 0, 1941f14a1c24SBarry Smith MatDestroy_MPIBAIJ, 1942f14a1c24SBarry Smith MatView_MPIBAIJ, 19438a124369SBarry Smith MatGetPetscMaps_Petsc, 19447843d17aSBarry Smith 0, 19457843d17aSBarry Smith 0, 19467843d17aSBarry Smith 0, 19477843d17aSBarry Smith 0, 19487843d17aSBarry Smith 0, 19497843d17aSBarry Smith 0, 19507843d17aSBarry Smith MatGetRowMax_MPIBAIJ}; 195179bdfe76SSatish Balay 19525ef9f2a5SBarry Smith 1953e18c124aSSatish Balay EXTERN_C_BEGIN 19544a2ae208SSatish Balay #undef __FUNCT__ 19554a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonalBlock_MPIBAIJ" 19565ef9f2a5SBarry Smith int MatGetDiagonalBlock_MPIBAIJ(Mat A,PetscTruth *iscopy,MatReuse reuse,Mat *a) 19575ef9f2a5SBarry Smith { 19585ef9f2a5SBarry Smith PetscFunctionBegin; 19595ef9f2a5SBarry Smith *a = ((Mat_MPIBAIJ *)A->data)->A; 19605ef9f2a5SBarry Smith *iscopy = PETSC_FALSE; 19615ef9f2a5SBarry Smith PetscFunctionReturn(0); 19625ef9f2a5SBarry Smith } 1963e18c124aSSatish Balay EXTERN_C_END 196479bdfe76SSatish Balay 1965273d9f13SBarry Smith EXTERN_C_BEGIN 19664a2ae208SSatish Balay #undef __FUNCT__ 19674a2ae208SSatish Balay #define __FUNCT__ "MatCreate_MPIBAIJ" 1968273d9f13SBarry Smith int MatCreate_MPIBAIJ(Mat B) 1969273d9f13SBarry Smith { 1970273d9f13SBarry Smith Mat_MPIBAIJ *b; 1971cfce73b9SSatish Balay int ierr; 1972273d9f13SBarry Smith PetscTruth flg; 1973273d9f13SBarry Smith 1974273d9f13SBarry Smith PetscFunctionBegin; 1975273d9f13SBarry Smith 197682502324SSatish Balay ierr = PetscNew(Mat_MPIBAIJ,&b);CHKERRQ(ierr); 197782502324SSatish Balay B->data = (void*)b; 197882502324SSatish Balay 1979273d9f13SBarry Smith ierr = PetscMemzero(b,sizeof(Mat_MPIBAIJ));CHKERRQ(ierr); 1980273d9f13SBarry Smith ierr = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr); 1981273d9f13SBarry Smith B->mapping = 0; 1982273d9f13SBarry Smith B->factor = 0; 1983273d9f13SBarry Smith B->assembled = PETSC_FALSE; 1984273d9f13SBarry Smith 1985273d9f13SBarry Smith B->insertmode = NOT_SET_VALUES; 1986273d9f13SBarry Smith ierr = MPI_Comm_rank(B->comm,&b->rank);CHKERRQ(ierr); 1987273d9f13SBarry Smith ierr = MPI_Comm_size(B->comm,&b->size);CHKERRQ(ierr); 1988273d9f13SBarry Smith 1989273d9f13SBarry Smith /* build local table of row and column ownerships */ 199082502324SSatish Balay ierr = PetscMalloc(3*(b->size+2)*sizeof(int),&b->rowners);CHKERRQ(ierr); 1991b0a32e0cSBarry Smith PetscLogObjectMemory(B,3*(b->size+2)*sizeof(int)+sizeof(struct _p_Mat)+sizeof(Mat_MPIBAIJ)); 1992273d9f13SBarry Smith b->cowners = b->rowners + b->size + 2; 1993273d9f13SBarry Smith b->rowners_bs = b->cowners + b->size + 2; 1994273d9f13SBarry Smith 1995273d9f13SBarry Smith /* build cache for off array entries formed */ 1996273d9f13SBarry Smith ierr = MatStashCreate_Private(B->comm,1,&B->stash);CHKERRQ(ierr); 1997273d9f13SBarry Smith b->donotstash = PETSC_FALSE; 1998273d9f13SBarry Smith b->colmap = PETSC_NULL; 1999273d9f13SBarry Smith b->garray = PETSC_NULL; 2000273d9f13SBarry Smith b->roworiented = PETSC_TRUE; 2001273d9f13SBarry Smith 2002cfce73b9SSatish Balay #if defined(PETSC_USE_MAT_SINGLE) 2003273d9f13SBarry Smith /* stuff for MatSetValues_XXX in single precision */ 200464a35ccbSBarry Smith b->setvalueslen = 0; 2005273d9f13SBarry Smith b->setvaluescopy = PETSC_NULL; 2006273d9f13SBarry Smith #endif 2007273d9f13SBarry Smith 2008273d9f13SBarry Smith /* stuff used in block assembly */ 2009273d9f13SBarry Smith b->barray = 0; 2010273d9f13SBarry Smith 2011273d9f13SBarry Smith /* stuff used for matrix vector multiply */ 2012273d9f13SBarry Smith b->lvec = 0; 2013273d9f13SBarry Smith b->Mvctx = 0; 2014273d9f13SBarry Smith 2015273d9f13SBarry Smith /* stuff for MatGetRow() */ 2016273d9f13SBarry Smith b->rowindices = 0; 2017273d9f13SBarry Smith b->rowvalues = 0; 2018273d9f13SBarry Smith b->getrowactive = PETSC_FALSE; 2019273d9f13SBarry Smith 2020273d9f13SBarry Smith /* hash table stuff */ 2021273d9f13SBarry Smith b->ht = 0; 2022273d9f13SBarry Smith b->hd = 0; 2023273d9f13SBarry Smith b->ht_size = 0; 2024273d9f13SBarry Smith b->ht_flag = PETSC_FALSE; 2025273d9f13SBarry Smith b->ht_fact = 0; 2026273d9f13SBarry Smith b->ht_total_ct = 0; 2027273d9f13SBarry Smith b->ht_insert_ct = 0; 2028273d9f13SBarry Smith 2029b0a32e0cSBarry Smith ierr = PetscOptionsHasName(PETSC_NULL,"-mat_use_hash_table",&flg);CHKERRQ(ierr); 2030273d9f13SBarry Smith if (flg) { 2031f6275e2eSBarry Smith PetscReal fact = 1.39; 2032273d9f13SBarry Smith ierr = MatSetOption(B,MAT_USE_HASH_TABLE);CHKERRQ(ierr); 203387828ca2SBarry Smith ierr = PetscOptionsGetReal(PETSC_NULL,"-mat_use_hash_table",&fact,PETSC_NULL);CHKERRQ(ierr); 2034273d9f13SBarry Smith if (fact <= 1.0) fact = 1.39; 2035273d9f13SBarry Smith ierr = MatMPIBAIJSetHashTableFactor(B,fact);CHKERRQ(ierr); 2036b0a32e0cSBarry Smith PetscLogInfo(0,"MatCreateMPIBAIJ:Hash table Factor used %5.2f\n",fact); 2037273d9f13SBarry Smith } 2038273d9f13SBarry Smith ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatStoreValues_C", 2039273d9f13SBarry Smith "MatStoreValues_MPIBAIJ", 2040273d9f13SBarry Smith MatStoreValues_MPIBAIJ);CHKERRQ(ierr); 2041273d9f13SBarry Smith ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatRetrieveValues_C", 2042273d9f13SBarry Smith "MatRetrieveValues_MPIBAIJ", 2043273d9f13SBarry Smith MatRetrieveValues_MPIBAIJ);CHKERRQ(ierr); 2044273d9f13SBarry Smith ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetDiagonalBlock_C", 2045273d9f13SBarry Smith "MatGetDiagonalBlock_MPIBAIJ", 2046273d9f13SBarry Smith MatGetDiagonalBlock_MPIBAIJ);CHKERRQ(ierr); 2047273d9f13SBarry Smith PetscFunctionReturn(0); 2048273d9f13SBarry Smith } 2049273d9f13SBarry Smith EXTERN_C_END 2050273d9f13SBarry Smith 20514a2ae208SSatish Balay #undef __FUNCT__ 20524a2ae208SSatish Balay #define __FUNCT__ "MatMPIBAIJSetPreallocation" 2053273d9f13SBarry Smith /*@C 2054273d9f13SBarry Smith MatMPIBAIJSetPreallocation - Creates a sparse parallel matrix in block AIJ format 2055273d9f13SBarry Smith (block compressed row). For good matrix assembly performance 2056273d9f13SBarry Smith the user should preallocate the matrix storage by setting the parameters 2057273d9f13SBarry Smith d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 2058273d9f13SBarry Smith performance can be increased by more than a factor of 50. 2059273d9f13SBarry Smith 2060273d9f13SBarry Smith Collective on Mat 2061273d9f13SBarry Smith 2062273d9f13SBarry Smith Input Parameters: 2063273d9f13SBarry Smith + A - the matrix 2064273d9f13SBarry Smith . bs - size of blockk 2065273d9f13SBarry Smith . d_nz - number of block nonzeros per block row in diagonal portion of local 2066273d9f13SBarry Smith submatrix (same for all local rows) 2067273d9f13SBarry Smith . d_nnz - array containing the number of block nonzeros in the various block rows 2068273d9f13SBarry Smith of the in diagonal portion of the local (possibly different for each block 2069273d9f13SBarry Smith row) or PETSC_NULL. You must leave room for the diagonal entry even if it is zero. 2070273d9f13SBarry Smith . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 2071273d9f13SBarry Smith submatrix (same for all local rows). 2072273d9f13SBarry Smith - o_nnz - array containing the number of nonzeros in the various block rows of the 2073273d9f13SBarry Smith off-diagonal portion of the local submatrix (possibly different for 2074273d9f13SBarry Smith each block row) or PETSC_NULL. 2075273d9f13SBarry Smith 2076273d9f13SBarry Smith Output Parameter: 2077273d9f13SBarry Smith 2078273d9f13SBarry Smith 2079273d9f13SBarry Smith Options Database Keys: 2080273d9f13SBarry Smith . -mat_no_unroll - uses code that does not unroll the loops in the 2081273d9f13SBarry Smith block calculations (much slower) 2082273d9f13SBarry Smith . -mat_block_size - size of the blocks to use 2083273d9f13SBarry Smith 2084273d9f13SBarry Smith Notes: 2085273d9f13SBarry Smith If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one processor 2086273d9f13SBarry Smith than it must be used on all processors that share the object for that argument. 2087273d9f13SBarry Smith 2088273d9f13SBarry Smith Storage Information: 2089273d9f13SBarry Smith For a square global matrix we define each processor's diagonal portion 2090273d9f13SBarry Smith to be its local rows and the corresponding columns (a square submatrix); 2091273d9f13SBarry Smith each processor's off-diagonal portion encompasses the remainder of the 2092273d9f13SBarry Smith local matrix (a rectangular submatrix). 2093273d9f13SBarry Smith 2094273d9f13SBarry Smith The user can specify preallocated storage for the diagonal part of 2095273d9f13SBarry Smith the local submatrix with either d_nz or d_nnz (not both). Set 2096273d9f13SBarry Smith d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic 2097273d9f13SBarry Smith memory allocation. Likewise, specify preallocated storage for the 2098273d9f13SBarry Smith off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 2099273d9f13SBarry Smith 2100273d9f13SBarry Smith Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 2101273d9f13SBarry Smith the figure below we depict these three local rows and all columns (0-11). 2102273d9f13SBarry Smith 2103273d9f13SBarry Smith .vb 2104273d9f13SBarry Smith 0 1 2 3 4 5 6 7 8 9 10 11 2105273d9f13SBarry Smith ------------------- 2106273d9f13SBarry Smith row 3 | o o o d d d o o o o o o 2107273d9f13SBarry Smith row 4 | o o o d d d o o o o o o 2108273d9f13SBarry Smith row 5 | o o o d d d o o o o o o 2109273d9f13SBarry Smith ------------------- 2110273d9f13SBarry Smith .ve 2111273d9f13SBarry Smith 2112273d9f13SBarry Smith Thus, any entries in the d locations are stored in the d (diagonal) 2113273d9f13SBarry Smith submatrix, and any entries in the o locations are stored in the 2114273d9f13SBarry Smith o (off-diagonal) submatrix. Note that the d and the o submatrices are 2115273d9f13SBarry Smith stored simply in the MATSEQBAIJ format for compressed row storage. 2116273d9f13SBarry Smith 2117273d9f13SBarry Smith Now d_nz should indicate the number of block nonzeros per row in the d matrix, 2118273d9f13SBarry Smith and o_nz should indicate the number of block nonzeros per row in the o matrix. 2119273d9f13SBarry Smith In general, for PDE problems in which most nonzeros are near the diagonal, 2120273d9f13SBarry Smith one expects d_nz >> o_nz. For large problems you MUST preallocate memory 2121273d9f13SBarry Smith or you will get TERRIBLE performance; see the users' manual chapter on 2122273d9f13SBarry Smith matrices. 2123273d9f13SBarry Smith 2124273d9f13SBarry Smith Level: intermediate 2125273d9f13SBarry Smith 2126273d9f13SBarry Smith .keywords: matrix, block, aij, compressed row, sparse, parallel 2127273d9f13SBarry Smith 2128273d9f13SBarry Smith .seealso: MatCreate(), MatCreateSeqBAIJ(), MatSetValues(), MatCreateMPIBAIJ() 2129273d9f13SBarry Smith @*/ 2130273d9f13SBarry Smith int MatMPIBAIJSetPreallocation(Mat B,int bs,int d_nz,int *d_nnz,int o_nz,int *o_nnz) 2131273d9f13SBarry Smith { 2132273d9f13SBarry Smith Mat_MPIBAIJ *b; 2133273d9f13SBarry Smith int ierr,i; 2134273d9f13SBarry Smith PetscTruth flg2; 2135273d9f13SBarry Smith 2136273d9f13SBarry Smith PetscFunctionBegin; 2137273d9f13SBarry Smith ierr = PetscTypeCompare((PetscObject)B,MATMPIBAIJ,&flg2);CHKERRQ(ierr); 2138273d9f13SBarry Smith if (!flg2) PetscFunctionReturn(0); 213947a75d0bSBarry Smith 2140273d9f13SBarry Smith B->preallocated = PETSC_TRUE; 2141b0a32e0cSBarry Smith ierr = PetscOptionsGetInt(PETSC_NULL,"-mat_block_size",&bs,PETSC_NULL);CHKERRQ(ierr); 2142273d9f13SBarry Smith 2143273d9f13SBarry Smith if (bs < 1) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Invalid block size specified, must be positive"); 2144435da068SBarry Smith if (d_nz == PETSC_DEFAULT || d_nz == PETSC_DECIDE) d_nz = 5; 2145435da068SBarry Smith if (o_nz == PETSC_DEFAULT || o_nz == PETSC_DECIDE) o_nz = 2; 2146435da068SBarry Smith if (d_nz < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"d_nz cannot be less than 0: value %d",d_nz); 2147435da068SBarry Smith if (o_nz < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"o_nz cannot be less than 0: value %d",o_nz); 2148273d9f13SBarry Smith if (d_nnz) { 2149273d9f13SBarry Smith for (i=0; i<B->m/bs; i++) { 2150273d9f13SBarry Smith if (d_nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"d_nnz cannot be less than -1: local row %d value %d",i,d_nnz[i]); 2151273d9f13SBarry Smith } 2152273d9f13SBarry Smith } 2153273d9f13SBarry Smith if (o_nnz) { 2154273d9f13SBarry Smith for (i=0; i<B->m/bs; i++) { 2155273d9f13SBarry Smith if (o_nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"o_nnz cannot be less than -1: local row %d value %d",i,o_nnz[i]); 2156273d9f13SBarry Smith } 2157273d9f13SBarry Smith } 2158273d9f13SBarry Smith 215947a75d0bSBarry Smith ierr = PetscSplitOwnershipBlock(B->comm,bs,&B->m,&B->M);CHKERRQ(ierr); 216047a75d0bSBarry Smith ierr = PetscSplitOwnershipBlock(B->comm,bs,&B->n,&B->N);CHKERRQ(ierr); 21618a124369SBarry Smith ierr = PetscMapCreateMPI(B->comm,B->m,B->M,&B->rmap);CHKERRQ(ierr); 21628a124369SBarry Smith ierr = PetscMapCreateMPI(B->comm,B->n,B->N,&B->cmap);CHKERRQ(ierr); 216347a75d0bSBarry Smith 2164273d9f13SBarry Smith b = (Mat_MPIBAIJ*)B->data; 2165273d9f13SBarry Smith b->bs = bs; 2166273d9f13SBarry Smith b->bs2 = bs*bs; 2167273d9f13SBarry Smith b->mbs = B->m/bs; 2168273d9f13SBarry Smith b->nbs = B->n/bs; 2169273d9f13SBarry Smith b->Mbs = B->M/bs; 2170273d9f13SBarry Smith b->Nbs = B->N/bs; 2171273d9f13SBarry Smith 2172273d9f13SBarry Smith ierr = MPI_Allgather(&b->mbs,1,MPI_INT,b->rowners+1,1,MPI_INT,B->comm);CHKERRQ(ierr); 2173273d9f13SBarry Smith b->rowners[0] = 0; 2174273d9f13SBarry Smith for (i=2; i<=b->size; i++) { 2175273d9f13SBarry Smith b->rowners[i] += b->rowners[i-1]; 2176273d9f13SBarry Smith } 2177273d9f13SBarry Smith b->rstart = b->rowners[b->rank]; 2178273d9f13SBarry Smith b->rend = b->rowners[b->rank+1]; 2179273d9f13SBarry Smith 2180273d9f13SBarry Smith ierr = MPI_Allgather(&b->nbs,1,MPI_INT,b->cowners+1,1,MPI_INT,B->comm);CHKERRQ(ierr); 2181273d9f13SBarry Smith b->cowners[0] = 0; 2182273d9f13SBarry Smith for (i=2; i<=b->size; i++) { 2183273d9f13SBarry Smith b->cowners[i] += b->cowners[i-1]; 2184273d9f13SBarry Smith } 2185273d9f13SBarry Smith b->cstart = b->cowners[b->rank]; 2186273d9f13SBarry Smith b->cend = b->cowners[b->rank+1]; 2187273d9f13SBarry Smith 2188273d9f13SBarry Smith for (i=0; i<=b->size; i++) { 2189273d9f13SBarry Smith b->rowners_bs[i] = b->rowners[i]*bs; 2190273d9f13SBarry Smith } 2191273d9f13SBarry Smith b->rstart_bs = b->rstart*bs; 2192273d9f13SBarry Smith b->rend_bs = b->rend*bs; 2193273d9f13SBarry Smith b->cstart_bs = b->cstart*bs; 2194273d9f13SBarry Smith b->cend_bs = b->cend*bs; 2195273d9f13SBarry Smith 2196273d9f13SBarry Smith ierr = MatCreateSeqBAIJ(PETSC_COMM_SELF,bs,B->m,B->n,d_nz,d_nnz,&b->A);CHKERRQ(ierr); 2197b0a32e0cSBarry Smith PetscLogObjectParent(B,b->A); 2198273d9f13SBarry Smith ierr = MatCreateSeqBAIJ(PETSC_COMM_SELF,bs,B->m,B->N,o_nz,o_nnz,&b->B);CHKERRQ(ierr); 2199b0a32e0cSBarry Smith PetscLogObjectParent(B,b->B); 2200273d9f13SBarry Smith ierr = MatStashCreate_Private(B->comm,bs,&B->bstash);CHKERRQ(ierr); 2201273d9f13SBarry Smith 2202273d9f13SBarry Smith PetscFunctionReturn(0); 2203273d9f13SBarry Smith } 2204273d9f13SBarry Smith 22054a2ae208SSatish Balay #undef __FUNCT__ 22064a2ae208SSatish Balay #define __FUNCT__ "MatCreateMPIBAIJ" 220779bdfe76SSatish Balay /*@C 220879bdfe76SSatish Balay MatCreateMPIBAIJ - Creates a sparse parallel matrix in block AIJ format 220979bdfe76SSatish Balay (block compressed row). For good matrix assembly performance 221079bdfe76SSatish Balay the user should preallocate the matrix storage by setting the parameters 221179bdfe76SSatish Balay d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 221279bdfe76SSatish Balay performance can be increased by more than a factor of 50. 221379bdfe76SSatish Balay 2214db81eaa0SLois Curfman McInnes Collective on MPI_Comm 2215db81eaa0SLois Curfman McInnes 221679bdfe76SSatish Balay Input Parameters: 2217db81eaa0SLois Curfman McInnes + comm - MPI communicator 221879bdfe76SSatish Balay . bs - size of blockk 221979bdfe76SSatish Balay . m - number of local rows (or PETSC_DECIDE to have calculated if M is given) 222092e8d321SLois Curfman McInnes This value should be the same as the local size used in creating the 222192e8d321SLois Curfman McInnes y vector for the matrix-vector product y = Ax. 222292e8d321SLois Curfman McInnes . n - number of local columns (or PETSC_DECIDE to have calculated if N is given) 222392e8d321SLois Curfman McInnes This value should be the same as the local size used in creating the 222492e8d321SLois Curfman McInnes x vector for the matrix-vector product y = Ax. 2225be79a94dSBarry Smith . M - number of global rows (or PETSC_DETERMINE to have calculated if m is given) 2226be79a94dSBarry Smith . N - number of global columns (or PETSC_DETERMINE to have calculated if n is given) 222747a75d0bSBarry Smith . d_nz - number of nonzero blocks per block row in diagonal portion of local 222879bdfe76SSatish Balay submatrix (same for all local rows) 222947a75d0bSBarry Smith . d_nnz - array containing the number of nonzero blocks in the various block rows 223092e8d321SLois Curfman McInnes of the in diagonal portion of the local (possibly different for each block 2231db81eaa0SLois Curfman McInnes row) or PETSC_NULL. You must leave room for the diagonal entry even if it is zero. 223247a75d0bSBarry Smith . o_nz - number of nonzero blocks per block row in the off-diagonal portion of local 223379bdfe76SSatish Balay submatrix (same for all local rows). 223447a75d0bSBarry Smith - o_nnz - array containing the number of nonzero blocks in the various block rows of the 223592e8d321SLois Curfman McInnes off-diagonal portion of the local submatrix (possibly different for 223692e8d321SLois Curfman McInnes each block row) or PETSC_NULL. 223779bdfe76SSatish Balay 223879bdfe76SSatish Balay Output Parameter: 223979bdfe76SSatish Balay . A - the matrix 224079bdfe76SSatish Balay 2241db81eaa0SLois Curfman McInnes Options Database Keys: 2242db81eaa0SLois Curfman McInnes . -mat_no_unroll - uses code that does not unroll the loops in the 2243db81eaa0SLois Curfman McInnes block calculations (much slower) 2244db81eaa0SLois Curfman McInnes . -mat_block_size - size of the blocks to use 22453ffaccefSLois Curfman McInnes 2246b259b22eSLois Curfman McInnes Notes: 224747a75d0bSBarry Smith A nonzero block is any block that as 1 or more nonzeros in it 224847a75d0bSBarry Smith 224979bdfe76SSatish Balay The user MUST specify either the local or global matrix dimensions 225079bdfe76SSatish Balay (possibly both). 225179bdfe76SSatish Balay 2252be79a94dSBarry Smith If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one processor 2253be79a94dSBarry Smith than it must be used on all processors that share the object for that argument. 2254be79a94dSBarry Smith 225579bdfe76SSatish Balay Storage Information: 225679bdfe76SSatish Balay For a square global matrix we define each processor's diagonal portion 225779bdfe76SSatish Balay to be its local rows and the corresponding columns (a square submatrix); 225879bdfe76SSatish Balay each processor's off-diagonal portion encompasses the remainder of the 225979bdfe76SSatish Balay local matrix (a rectangular submatrix). 226079bdfe76SSatish Balay 226179bdfe76SSatish Balay The user can specify preallocated storage for the diagonal part of 226279bdfe76SSatish Balay the local submatrix with either d_nz or d_nnz (not both). Set 226379bdfe76SSatish Balay d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic 226479bdfe76SSatish Balay memory allocation. Likewise, specify preallocated storage for the 226579bdfe76SSatish Balay off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 226679bdfe76SSatish Balay 226779bdfe76SSatish Balay Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 226879bdfe76SSatish Balay the figure below we depict these three local rows and all columns (0-11). 226979bdfe76SSatish Balay 2270db81eaa0SLois Curfman McInnes .vb 2271db81eaa0SLois Curfman McInnes 0 1 2 3 4 5 6 7 8 9 10 11 2272db81eaa0SLois Curfman McInnes ------------------- 2273db81eaa0SLois Curfman McInnes row 3 | o o o d d d o o o o o o 2274db81eaa0SLois Curfman McInnes row 4 | o o o d d d o o o o o o 2275db81eaa0SLois Curfman McInnes row 5 | o o o d d d o o o o o o 2276db81eaa0SLois Curfman McInnes ------------------- 2277db81eaa0SLois Curfman McInnes .ve 227879bdfe76SSatish Balay 227979bdfe76SSatish Balay Thus, any entries in the d locations are stored in the d (diagonal) 228079bdfe76SSatish Balay submatrix, and any entries in the o locations are stored in the 228179bdfe76SSatish Balay o (off-diagonal) submatrix. Note that the d and the o submatrices are 228257b952d6SSatish Balay stored simply in the MATSEQBAIJ format for compressed row storage. 228379bdfe76SSatish Balay 2284d64ed03dSBarry Smith Now d_nz should indicate the number of block nonzeros per row in the d matrix, 2285d64ed03dSBarry Smith and o_nz should indicate the number of block nonzeros per row in the o matrix. 228679bdfe76SSatish Balay In general, for PDE problems in which most nonzeros are near the diagonal, 228792e8d321SLois Curfman McInnes one expects d_nz >> o_nz. For large problems you MUST preallocate memory 228892e8d321SLois Curfman McInnes or you will get TERRIBLE performance; see the users' manual chapter on 22896da5968aSLois Curfman McInnes matrices. 229079bdfe76SSatish Balay 2291027ccd11SLois Curfman McInnes Level: intermediate 2292027ccd11SLois Curfman McInnes 229392e8d321SLois Curfman McInnes .keywords: matrix, block, aij, compressed row, sparse, parallel 229479bdfe76SSatish Balay 22953eda8832SBarry Smith .seealso: MatCreate(), MatCreateSeqBAIJ(), MatSetValues(), MatCreateMPIBAIJ() 229679bdfe76SSatish Balay @*/ 2297329f5518SBarry Smith int MatCreateMPIBAIJ(MPI_Comm comm,int bs,int m,int n,int M,int N,int d_nz,int *d_nnz,int o_nz,int *o_nnz,Mat *A) 229879bdfe76SSatish Balay { 2299273d9f13SBarry Smith int ierr,size; 230079bdfe76SSatish Balay 2301d64ed03dSBarry Smith PetscFunctionBegin; 2302273d9f13SBarry Smith ierr = MatCreate(comm,m,n,M,N,A);CHKERRQ(ierr); 2303d132466eSBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 2304273d9f13SBarry Smith if (size > 1) { 2305273d9f13SBarry Smith ierr = MatSetType(*A,MATMPIBAIJ);CHKERRQ(ierr); 2306273d9f13SBarry Smith ierr = MatMPIBAIJSetPreallocation(*A,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr); 2307273d9f13SBarry Smith } else { 2308273d9f13SBarry Smith ierr = MatSetType(*A,MATSEQBAIJ);CHKERRQ(ierr); 2309273d9f13SBarry Smith ierr = MatSeqBAIJSetPreallocation(*A,bs,d_nz,d_nnz);CHKERRQ(ierr); 23103914022bSBarry Smith } 23113a40ed3dSBarry Smith PetscFunctionReturn(0); 231279bdfe76SSatish Balay } 2313026e39d0SSatish Balay 23144a2ae208SSatish Balay #undef __FUNCT__ 23154a2ae208SSatish Balay #define __FUNCT__ "MatDuplicate_MPIBAIJ" 23162e8a6d31SBarry Smith static int MatDuplicate_MPIBAIJ(Mat matin,MatDuplicateOption cpvalues,Mat *newmat) 23170ac07820SSatish Balay { 23180ac07820SSatish Balay Mat mat; 23190ac07820SSatish Balay Mat_MPIBAIJ *a,*oldmat = (Mat_MPIBAIJ*)matin->data; 2320f1af5d2fSBarry Smith int ierr,len=0; 23210ac07820SSatish Balay 2322d64ed03dSBarry Smith PetscFunctionBegin; 23230ac07820SSatish Balay *newmat = 0; 2324273d9f13SBarry Smith ierr = MatCreate(matin->comm,matin->m,matin->n,matin->M,matin->N,&mat);CHKERRQ(ierr); 2325273d9f13SBarry Smith ierr = MatSetType(mat,MATMPIBAIJ);CHKERRQ(ierr); 2326273d9f13SBarry Smith mat->preallocated = PETSC_TRUE; 23270ac07820SSatish Balay mat->assembled = PETSC_TRUE; 2328273d9f13SBarry Smith a = (Mat_MPIBAIJ*)mat->data; 23290ac07820SSatish Balay a->bs = oldmat->bs; 23300ac07820SSatish Balay a->bs2 = oldmat->bs2; 23310ac07820SSatish Balay a->mbs = oldmat->mbs; 23320ac07820SSatish Balay a->nbs = oldmat->nbs; 23330ac07820SSatish Balay a->Mbs = oldmat->Mbs; 23340ac07820SSatish Balay a->Nbs = oldmat->Nbs; 23350ac07820SSatish Balay 23360ac07820SSatish Balay a->rstart = oldmat->rstart; 23370ac07820SSatish Balay a->rend = oldmat->rend; 23380ac07820SSatish Balay a->cstart = oldmat->cstart; 23390ac07820SSatish Balay a->cend = oldmat->cend; 23400ac07820SSatish Balay a->size = oldmat->size; 23410ac07820SSatish Balay a->rank = oldmat->rank; 2342aef5e8e0SSatish Balay a->donotstash = oldmat->donotstash; 2343aef5e8e0SSatish Balay a->roworiented = oldmat->roworiented; 2344aef5e8e0SSatish Balay a->rowindices = 0; 23450ac07820SSatish Balay a->rowvalues = 0; 23460ac07820SSatish Balay a->getrowactive = PETSC_FALSE; 234730793edcSSatish Balay a->barray = 0; 23483123a43fSSatish Balay a->rstart_bs = oldmat->rstart_bs; 23493123a43fSSatish Balay a->rend_bs = oldmat->rend_bs; 23503123a43fSSatish Balay a->cstart_bs = oldmat->cstart_bs; 23513123a43fSSatish Balay a->cend_bs = oldmat->cend_bs; 23520ac07820SSatish Balay 2353133cdb44SSatish Balay /* hash table stuff */ 2354133cdb44SSatish Balay a->ht = 0; 2355133cdb44SSatish Balay a->hd = 0; 2356133cdb44SSatish Balay a->ht_size = 0; 2357133cdb44SSatish Balay a->ht_flag = oldmat->ht_flag; 235825fdafccSSatish Balay a->ht_fact = oldmat->ht_fact; 2359133cdb44SSatish Balay a->ht_total_ct = 0; 2360133cdb44SSatish Balay a->ht_insert_ct = 0; 2361133cdb44SSatish Balay 2362549d3d68SSatish Balay ierr = PetscMemcpy(a->rowners,oldmat->rowners,3*(a->size+2)*sizeof(int));CHKERRQ(ierr); 23638798bf22SSatish Balay ierr = MatStashCreate_Private(matin->comm,1,&mat->stash);CHKERRQ(ierr); 23648798bf22SSatish Balay ierr = MatStashCreate_Private(matin->comm,oldmat->bs,&mat->bstash);CHKERRQ(ierr); 23650ac07820SSatish Balay if (oldmat->colmap) { 2366aa482453SBarry Smith #if defined (PETSC_USE_CTABLE) 23670f5bd95cSBarry Smith ierr = PetscTableCreateCopy(oldmat->colmap,&a->colmap);CHKERRQ(ierr); 236848e59246SSatish Balay #else 236982502324SSatish Balay ierr = PetscMalloc((a->Nbs)*sizeof(int),&a->colmap);CHKERRQ(ierr); 2370b0a32e0cSBarry Smith PetscLogObjectMemory(mat,(a->Nbs)*sizeof(int)); 2371549d3d68SSatish Balay ierr = PetscMemcpy(a->colmap,oldmat->colmap,(a->Nbs)*sizeof(int));CHKERRQ(ierr); 237248e59246SSatish Balay #endif 23730ac07820SSatish Balay } else a->colmap = 0; 23740ac07820SSatish Balay if (oldmat->garray && (len = ((Mat_SeqBAIJ*)(oldmat->B->data))->nbs)) { 237582502324SSatish Balay ierr = PetscMalloc(len*sizeof(int),&a->garray);CHKERRQ(ierr); 2376b0a32e0cSBarry Smith PetscLogObjectMemory(mat,len*sizeof(int)); 2377549d3d68SSatish Balay ierr = PetscMemcpy(a->garray,oldmat->garray,len*sizeof(int));CHKERRQ(ierr); 23780ac07820SSatish Balay } else a->garray = 0; 23790ac07820SSatish Balay 23800ac07820SSatish Balay ierr = VecDuplicate(oldmat->lvec,&a->lvec);CHKERRQ(ierr); 2381b0a32e0cSBarry Smith PetscLogObjectParent(mat,a->lvec); 23820ac07820SSatish Balay ierr = VecScatterCopy(oldmat->Mvctx,&a->Mvctx);CHKERRQ(ierr); 2383e18c124aSSatish Balay 2384b0a32e0cSBarry Smith PetscLogObjectParent(mat,a->Mvctx); 23852e8a6d31SBarry Smith ierr = MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr); 2386b0a32e0cSBarry Smith PetscLogObjectParent(mat,a->A); 23872e8a6d31SBarry Smith ierr = MatDuplicate(oldmat->B,cpvalues,&a->B);CHKERRQ(ierr); 2388b0a32e0cSBarry Smith PetscLogObjectParent(mat,a->B); 2389b0a32e0cSBarry Smith ierr = PetscFListDuplicate(matin->qlist,&mat->qlist);CHKERRQ(ierr); 23900ac07820SSatish Balay *newmat = mat; 23913a40ed3dSBarry Smith PetscFunctionReturn(0); 23920ac07820SSatish Balay } 239357b952d6SSatish Balay 2394e090d566SSatish Balay #include "petscsys.h" 239557b952d6SSatish Balay 2396273d9f13SBarry Smith EXTERN_C_BEGIN 23974a2ae208SSatish Balay #undef __FUNCT__ 23984a2ae208SSatish Balay #define __FUNCT__ "MatLoad_MPIBAIJ" 2399b0a32e0cSBarry Smith int MatLoad_MPIBAIJ(PetscViewer viewer,MatType type,Mat *newmat) 240057b952d6SSatish Balay { 240157b952d6SSatish Balay Mat A; 240257b952d6SSatish Balay int i,nz,ierr,j,rstart,rend,fd; 240387828ca2SBarry Smith PetscScalar *vals,*buf; 240457b952d6SSatish Balay MPI_Comm comm = ((PetscObject)viewer)->comm; 240557b952d6SSatish Balay MPI_Status status; 2406cee3aa6bSSatish Balay int header[4],rank,size,*rowlengths = 0,M,N,m,*rowners,*browners,maxnz,*cols; 240757b952d6SSatish Balay int *locrowlens,*sndcounts = 0,*procsnz = 0,jj,*mycols,*ibuf; 2408f1af5d2fSBarry Smith int tag = ((PetscObject)viewer)->tag,bs=1,Mbs,mbs,extra_rows; 240957b952d6SSatish Balay int *dlens,*odlens,*mask,*masked1,*masked2,rowcount,odcount; 241057b952d6SSatish Balay int dcount,kmax,k,nzcount,tmp; 241157b952d6SSatish Balay 2412d64ed03dSBarry Smith PetscFunctionBegin; 2413b0a32e0cSBarry Smith ierr = PetscOptionsGetInt(PETSC_NULL,"-matload_block_size",&bs,PETSC_NULL);CHKERRQ(ierr); 241457b952d6SSatish Balay 2415d132466eSBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 2416d132466eSBarry Smith ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 241757b952d6SSatish Balay if (!rank) { 2418b0a32e0cSBarry Smith ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr); 2419e5638eb3SBarry Smith ierr = PetscBinaryRead(fd,(char *)header,4,PETSC_INT);CHKERRQ(ierr); 2420552e946dSBarry Smith if (header[0] != MAT_FILE_COOKIE) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"not matrix object"); 2421d64ed03dSBarry Smith if (header[3] < 0) { 242229bbc08cSBarry Smith SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"Matrix stored in special format, cannot load as MPIBAIJ"); 2423d64ed03dSBarry Smith } 24246c5fab8fSBarry Smith } 2425d64ed03dSBarry Smith 2426ca161407SBarry Smith ierr = MPI_Bcast(header+1,3,MPI_INT,0,comm);CHKERRQ(ierr); 242757b952d6SSatish Balay M = header[1]; N = header[2]; 242857b952d6SSatish Balay 242929bbc08cSBarry Smith if (M != N) SETERRQ(PETSC_ERR_SUP,"Can only do square matrices"); 243057b952d6SSatish Balay 243157b952d6SSatish Balay /* 243257b952d6SSatish Balay This code adds extra rows to make sure the number of rows is 243357b952d6SSatish Balay divisible by the blocksize 243457b952d6SSatish Balay */ 243557b952d6SSatish Balay Mbs = M/bs; 243657b952d6SSatish Balay extra_rows = bs - M + bs*(Mbs); 243757b952d6SSatish Balay if (extra_rows == bs) extra_rows = 0; 243857b952d6SSatish Balay else Mbs++; 243957b952d6SSatish Balay if (extra_rows &&!rank) { 2440b0a32e0cSBarry Smith PetscLogInfo(0,"MatLoad_MPIBAIJ:Padding loaded matrix to match blocksize\n"); 244157b952d6SSatish Balay } 2442537820f0SBarry Smith 244357b952d6SSatish Balay /* determine ownership of all rows */ 244457b952d6SSatish Balay mbs = Mbs/size + ((Mbs % size) > rank); 244557b952d6SSatish Balay m = mbs*bs; 2446b0a32e0cSBarry Smith ierr = PetscMalloc(2*(size+2)*sizeof(int),&rowners);CHKERRQ(ierr); 2447cee3aa6bSSatish Balay browners = rowners + size + 1; 2448ca161407SBarry Smith ierr = MPI_Allgather(&mbs,1,MPI_INT,rowners+1,1,MPI_INT,comm);CHKERRQ(ierr); 244957b952d6SSatish Balay rowners[0] = 0; 2450cee3aa6bSSatish Balay for (i=2; i<=size; i++) rowners[i] += rowners[i-1]; 2451cee3aa6bSSatish Balay for (i=0; i<=size; i++) browners[i] = rowners[i]*bs; 245257b952d6SSatish Balay rstart = rowners[rank]; 245357b952d6SSatish Balay rend = rowners[rank+1]; 245457b952d6SSatish Balay 245557b952d6SSatish Balay /* distribute row lengths to all processors */ 245682502324SSatish Balay ierr = PetscMalloc((rend-rstart)*bs*sizeof(int),&locrowlens);CHKERRQ(ierr); 245757b952d6SSatish Balay if (!rank) { 2458b0a32e0cSBarry Smith ierr = PetscMalloc((M+extra_rows)*sizeof(int),&rowlengths);CHKERRQ(ierr); 2459e5638eb3SBarry Smith ierr = PetscBinaryRead(fd,rowlengths,M,PETSC_INT);CHKERRQ(ierr); 246057b952d6SSatish Balay for (i=0; i<extra_rows; i++) rowlengths[M+i] = 1; 246182502324SSatish Balay ierr = PetscMalloc(size*sizeof(int),&sndcounts);CHKERRQ(ierr); 2462cee3aa6bSSatish Balay for (i=0; i<size; i++) sndcounts[i] = browners[i+1] - browners[i]; 2463ca161407SBarry Smith ierr = MPI_Scatterv(rowlengths,sndcounts,browners,MPI_INT,locrowlens,(rend-rstart)*bs,MPI_INT,0,comm);CHKERRQ(ierr); 2464606d414cSSatish Balay ierr = PetscFree(sndcounts);CHKERRQ(ierr); 2465d64ed03dSBarry Smith } else { 2466ca161407SBarry Smith ierr = MPI_Scatterv(0,0,0,MPI_INT,locrowlens,(rend-rstart)*bs,MPI_INT,0,comm);CHKERRQ(ierr); 246757b952d6SSatish Balay } 246857b952d6SSatish Balay 246957b952d6SSatish Balay if (!rank) { 247057b952d6SSatish Balay /* calculate the number of nonzeros on each processor */ 247182502324SSatish Balay ierr = PetscMalloc(size*sizeof(int),&procsnz);CHKERRQ(ierr); 2472549d3d68SSatish Balay ierr = PetscMemzero(procsnz,size*sizeof(int));CHKERRQ(ierr); 247357b952d6SSatish Balay for (i=0; i<size; i++) { 247457b952d6SSatish Balay for (j=rowners[i]*bs; j< rowners[i+1]*bs; j++) { 247557b952d6SSatish Balay procsnz[i] += rowlengths[j]; 247657b952d6SSatish Balay } 247757b952d6SSatish Balay } 2478606d414cSSatish Balay ierr = PetscFree(rowlengths);CHKERRQ(ierr); 247957b952d6SSatish Balay 248057b952d6SSatish Balay /* determine max buffer needed and allocate it */ 248157b952d6SSatish Balay maxnz = 0; 248257b952d6SSatish Balay for (i=0; i<size; i++) { 248357b952d6SSatish Balay maxnz = PetscMax(maxnz,procsnz[i]); 248457b952d6SSatish Balay } 248582502324SSatish Balay ierr = PetscMalloc(maxnz*sizeof(int),&cols);CHKERRQ(ierr); 248657b952d6SSatish Balay 248757b952d6SSatish Balay /* read in my part of the matrix column indices */ 248857b952d6SSatish Balay nz = procsnz[0]; 248982502324SSatish Balay ierr = PetscMalloc(nz*sizeof(int),&ibuf);CHKERRQ(ierr); 249057b952d6SSatish Balay mycols = ibuf; 2491cee3aa6bSSatish Balay if (size == 1) nz -= extra_rows; 2492e5638eb3SBarry Smith ierr = PetscBinaryRead(fd,mycols,nz,PETSC_INT);CHKERRQ(ierr); 2493cee3aa6bSSatish Balay if (size == 1) for (i=0; i< extra_rows; i++) { mycols[nz+i] = M+i; } 2494cee3aa6bSSatish Balay 249557b952d6SSatish Balay /* read in every ones (except the last) and ship off */ 249657b952d6SSatish Balay for (i=1; i<size-1; i++) { 249757b952d6SSatish Balay nz = procsnz[i]; 2498e5638eb3SBarry Smith ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr); 2499ca161407SBarry Smith ierr = MPI_Send(cols,nz,MPI_INT,i,tag,comm);CHKERRQ(ierr); 250057b952d6SSatish Balay } 250157b952d6SSatish Balay /* read in the stuff for the last proc */ 250257b952d6SSatish Balay if (size != 1) { 250357b952d6SSatish Balay nz = procsnz[size-1] - extra_rows; /* the extra rows are not on the disk */ 2504e5638eb3SBarry Smith ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr); 250557b952d6SSatish Balay for (i=0; i<extra_rows; i++) cols[nz+i] = M+i; 2506ca161407SBarry Smith ierr = MPI_Send(cols,nz+extra_rows,MPI_INT,size-1,tag,comm);CHKERRQ(ierr); 250757b952d6SSatish Balay } 2508606d414cSSatish Balay ierr = PetscFree(cols);CHKERRQ(ierr); 2509d64ed03dSBarry Smith } else { 251057b952d6SSatish Balay /* determine buffer space needed for message */ 251157b952d6SSatish Balay nz = 0; 251257b952d6SSatish Balay for (i=0; i<m; i++) { 251357b952d6SSatish Balay nz += locrowlens[i]; 251457b952d6SSatish Balay } 251582502324SSatish Balay ierr = PetscMalloc(nz*sizeof(int),&ibuf);CHKERRQ(ierr); 251657b952d6SSatish Balay mycols = ibuf; 251757b952d6SSatish Balay /* receive message of column indices*/ 2518ca161407SBarry Smith ierr = MPI_Recv(mycols,nz,MPI_INT,0,tag,comm,&status);CHKERRQ(ierr); 2519ca161407SBarry Smith ierr = MPI_Get_count(&status,MPI_INT,&maxnz);CHKERRQ(ierr); 252029bbc08cSBarry Smith if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 252157b952d6SSatish Balay } 252257b952d6SSatish Balay 252357b952d6SSatish Balay /* loop over local rows, determining number of off diagonal entries */ 252482502324SSatish Balay ierr = PetscMalloc(2*(rend-rstart+1)*sizeof(int),&dlens);CHKERRQ(ierr); 2525cee3aa6bSSatish Balay odlens = dlens + (rend-rstart); 252682502324SSatish Balay ierr = PetscMalloc(3*Mbs*sizeof(int),&mask);CHKERRQ(ierr); 2527549d3d68SSatish Balay ierr = PetscMemzero(mask,3*Mbs*sizeof(int));CHKERRQ(ierr); 252857b952d6SSatish Balay masked1 = mask + Mbs; 252957b952d6SSatish Balay masked2 = masked1 + Mbs; 253057b952d6SSatish Balay rowcount = 0; nzcount = 0; 253157b952d6SSatish Balay for (i=0; i<mbs; i++) { 253257b952d6SSatish Balay dcount = 0; 253357b952d6SSatish Balay odcount = 0; 253457b952d6SSatish Balay for (j=0; j<bs; j++) { 253557b952d6SSatish Balay kmax = locrowlens[rowcount]; 253657b952d6SSatish Balay for (k=0; k<kmax; k++) { 253757b952d6SSatish Balay tmp = mycols[nzcount++]/bs; 253857b952d6SSatish Balay if (!mask[tmp]) { 253957b952d6SSatish Balay mask[tmp] = 1; 254057b952d6SSatish Balay if (tmp < rstart || tmp >= rend) masked2[odcount++] = tmp; 254157b952d6SSatish Balay else masked1[dcount++] = tmp; 254257b952d6SSatish Balay } 254357b952d6SSatish Balay } 254457b952d6SSatish Balay rowcount++; 254557b952d6SSatish Balay } 2546cee3aa6bSSatish Balay 254757b952d6SSatish Balay dlens[i] = dcount; 254857b952d6SSatish Balay odlens[i] = odcount; 2549cee3aa6bSSatish Balay 255057b952d6SSatish Balay /* zero out the mask elements we set */ 255157b952d6SSatish Balay for (j=0; j<dcount; j++) mask[masked1[j]] = 0; 255257b952d6SSatish Balay for (j=0; j<odcount; j++) mask[masked2[j]] = 0; 255357b952d6SSatish Balay } 2554cee3aa6bSSatish Balay 255557b952d6SSatish Balay /* create our matrix */ 255647a75d0bSBarry Smith ierr = MatCreateMPIBAIJ(comm,bs,m,m,M+extra_rows,N+extra_rows,0,dlens,0,odlens,newmat);CHKERRQ(ierr); 255757b952d6SSatish Balay A = *newmat; 25586d4a8577SBarry Smith MatSetOption(A,MAT_COLUMNS_SORTED); 255957b952d6SSatish Balay 256057b952d6SSatish Balay if (!rank) { 256187828ca2SBarry Smith ierr = PetscMalloc(maxnz*sizeof(PetscScalar),&buf);CHKERRQ(ierr); 256257b952d6SSatish Balay /* read in my part of the matrix numerical values */ 256357b952d6SSatish Balay nz = procsnz[0]; 256457b952d6SSatish Balay vals = buf; 2565cee3aa6bSSatish Balay mycols = ibuf; 2566cee3aa6bSSatish Balay if (size == 1) nz -= extra_rows; 2567e5638eb3SBarry Smith ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 2568cee3aa6bSSatish Balay if (size == 1) for (i=0; i< extra_rows; i++) { vals[nz+i] = 1.0; } 2569537820f0SBarry Smith 257057b952d6SSatish Balay /* insert into matrix */ 257157b952d6SSatish Balay jj = rstart*bs; 257257b952d6SSatish Balay for (i=0; i<m; i++) { 2573b48991e4SBarry Smith ierr = MatSetValues(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr); 257457b952d6SSatish Balay mycols += locrowlens[i]; 257557b952d6SSatish Balay vals += locrowlens[i]; 257657b952d6SSatish Balay jj++; 257757b952d6SSatish Balay } 257857b952d6SSatish Balay /* read in other processors (except the last one) and ship out */ 257957b952d6SSatish Balay for (i=1; i<size-1; i++) { 258057b952d6SSatish Balay nz = procsnz[i]; 258157b952d6SSatish Balay vals = buf; 2582e5638eb3SBarry Smith ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 2583ca161407SBarry Smith ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,A->tag,comm);CHKERRQ(ierr); 258457b952d6SSatish Balay } 258557b952d6SSatish Balay /* the last proc */ 258657b952d6SSatish Balay if (size != 1){ 258757b952d6SSatish Balay nz = procsnz[i] - extra_rows; 2588cee3aa6bSSatish Balay vals = buf; 2589e5638eb3SBarry Smith ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 259057b952d6SSatish Balay for (i=0; i<extra_rows; i++) vals[nz+i] = 1.0; 2591ca161407SBarry Smith ierr = MPI_Send(vals,nz+extra_rows,MPIU_SCALAR,size-1,A->tag,comm);CHKERRQ(ierr); 259257b952d6SSatish Balay } 2593606d414cSSatish Balay ierr = PetscFree(procsnz);CHKERRQ(ierr); 2594d64ed03dSBarry Smith } else { 259557b952d6SSatish Balay /* receive numeric values */ 259687828ca2SBarry Smith ierr = PetscMalloc(nz*sizeof(PetscScalar),&buf);CHKERRQ(ierr); 259757b952d6SSatish Balay 259857b952d6SSatish Balay /* receive message of values*/ 259957b952d6SSatish Balay vals = buf; 2600cee3aa6bSSatish Balay mycols = ibuf; 2601ca161407SBarry Smith ierr = MPI_Recv(vals,nz,MPIU_SCALAR,0,A->tag,comm,&status);CHKERRQ(ierr); 2602ca161407SBarry Smith ierr = MPI_Get_count(&status,MPIU_SCALAR,&maxnz);CHKERRQ(ierr); 260329bbc08cSBarry Smith if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 260457b952d6SSatish Balay 260557b952d6SSatish Balay /* insert into matrix */ 260657b952d6SSatish Balay jj = rstart*bs; 2607cee3aa6bSSatish Balay for (i=0; i<m; i++) { 2608b48991e4SBarry Smith ierr = MatSetValues(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr); 260957b952d6SSatish Balay mycols += locrowlens[i]; 261057b952d6SSatish Balay vals += locrowlens[i]; 261157b952d6SSatish Balay jj++; 261257b952d6SSatish Balay } 261357b952d6SSatish Balay } 2614606d414cSSatish Balay ierr = PetscFree(locrowlens);CHKERRQ(ierr); 2615606d414cSSatish Balay ierr = PetscFree(buf);CHKERRQ(ierr); 2616606d414cSSatish Balay ierr = PetscFree(ibuf);CHKERRQ(ierr); 2617606d414cSSatish Balay ierr = PetscFree(rowners);CHKERRQ(ierr); 2618606d414cSSatish Balay ierr = PetscFree(dlens);CHKERRQ(ierr); 2619606d414cSSatish Balay ierr = PetscFree(mask);CHKERRQ(ierr); 26206d4a8577SBarry Smith ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 26216d4a8577SBarry Smith ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 26223a40ed3dSBarry Smith PetscFunctionReturn(0); 262357b952d6SSatish Balay } 2624273d9f13SBarry Smith EXTERN_C_END 262557b952d6SSatish Balay 26264a2ae208SSatish Balay #undef __FUNCT__ 26274a2ae208SSatish Balay #define __FUNCT__ "MatMPIBAIJSetHashTableFactor" 2628133cdb44SSatish Balay /*@ 2629133cdb44SSatish Balay MatMPIBAIJSetHashTableFactor - Sets the factor required to compute the size of the HashTable. 2630133cdb44SSatish Balay 2631133cdb44SSatish Balay Input Parameters: 2632133cdb44SSatish Balay . mat - the matrix 2633133cdb44SSatish Balay . fact - factor 2634133cdb44SSatish Balay 2635fee21e36SBarry Smith Collective on Mat 2636fee21e36SBarry Smith 26378c890885SBarry Smith Level: advanced 26388c890885SBarry Smith 2639133cdb44SSatish Balay Notes: 2640133cdb44SSatish Balay This can also be set by the command line option: -mat_use_hash_table fact 2641133cdb44SSatish Balay 2642133cdb44SSatish Balay .keywords: matrix, hashtable, factor, HT 2643133cdb44SSatish Balay 2644133cdb44SSatish Balay .seealso: MatSetOption() 2645133cdb44SSatish Balay @*/ 2646329f5518SBarry Smith int MatMPIBAIJSetHashTableFactor(Mat mat,PetscReal fact) 2647133cdb44SSatish Balay { 264825fdafccSSatish Balay Mat_MPIBAIJ *baij; 2649273d9f13SBarry Smith int ierr; 2650273d9f13SBarry Smith PetscTruth flg; 2651133cdb44SSatish Balay 2652133cdb44SSatish Balay PetscFunctionBegin; 2653133cdb44SSatish Balay PetscValidHeaderSpecific(mat,MAT_COOKIE); 2654273d9f13SBarry Smith ierr = PetscTypeCompare((PetscObject)mat,MATMPIBAIJ,&flg);CHKERRQ(ierr); 2655273d9f13SBarry Smith if (!flg) { 265629bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_WRONG,"Incorrect matrix type. Use MPIBAIJ only."); 2657133cdb44SSatish Balay } 2658133cdb44SSatish Balay baij = (Mat_MPIBAIJ*)mat->data; 2659133cdb44SSatish Balay baij->ht_fact = fact; 2660133cdb44SSatish Balay PetscFunctionReturn(0); 2661133cdb44SSatish Balay } 2662f2a5309cSSatish Balay 26634a2ae208SSatish Balay #undef __FUNCT__ 26644a2ae208SSatish Balay #define __FUNCT__ "MatMPIBAIJGetSeqBAIJ" 2665435da068SBarry Smith int MatMPIBAIJGetSeqBAIJ(Mat A,Mat *Ad,Mat *Ao,int **colmap) 2666f2a5309cSSatish Balay { 2667f2a5309cSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 2668f2a5309cSSatish Balay PetscFunctionBegin; 2669f2a5309cSSatish Balay *Ad = a->A; 2670f2a5309cSSatish Balay *Ao = a->B; 2671195d93cdSBarry Smith *colmap = a->garray; 2672f2a5309cSSatish Balay PetscFunctionReturn(0); 2673f2a5309cSSatish Balay } 2674