1a5eb4965SSatish Balay #ifdef PETSC_RCS_HEADER 2*a74b47caSSatish Balay static char vcid[] = "$Id: mpibaij.c,v 1.97 1998/01/12 20:34:41 balay Exp balay $"; 379bdfe76SSatish Balay #endif 479bdfe76SSatish Balay 53369ce9aSBarry Smith #include "pinclude/pviewer.h" 670f55243SBarry Smith #include "src/mat/impls/baij/mpi/mpibaij.h" 7c16cb8f2SBarry Smith #include "src/vec/vecimpl.h" 879bdfe76SSatish Balay 957b952d6SSatish Balay 1057b952d6SSatish Balay extern int MatSetUpMultiply_MPIBAIJ(Mat); 1157b952d6SSatish Balay extern int DisAssemble_MPIBAIJ(Mat); 12d212a18eSSatish Balay extern int MatIncreaseOverlap_MPIBAIJ(Mat,int,IS *,int); 13d212a18eSSatish Balay extern int MatGetSubMatrices_MPIBAIJ(Mat,int,IS *,IS *,MatGetSubMatrixCall,Mat **); 143b2fbd54SBarry Smith 15537820f0SBarry Smith /* 16537820f0SBarry Smith Local utility routine that creates a mapping from the global column 1757b952d6SSatish Balay number to the local number in the off-diagonal part of the local 1857b952d6SSatish Balay storage of the matrix. This is done in a non scable way since the 1957b952d6SSatish Balay length of colmap equals the global matrix length. 2057b952d6SSatish Balay */ 215615d1e5SSatish Balay #undef __FUNC__ 225615d1e5SSatish Balay #define __FUNC__ "CreateColmap_MPIBAIJ_Private" 2357b952d6SSatish Balay static int CreateColmap_MPIBAIJ_Private(Mat mat) 2457b952d6SSatish Balay { 2557b952d6SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *) mat->data; 2657b952d6SSatish Balay Mat_SeqBAIJ *B = (Mat_SeqBAIJ*) baij->B->data; 27928fc39bSSatish Balay int nbs = B->nbs,i,bs=B->bs;; 2857b952d6SSatish Balay 29d64ed03dSBarry Smith PetscFunctionBegin; 30758f045eSSatish Balay baij->colmap = (int *) PetscMalloc((baij->Nbs+1)*sizeof(int));CHKPTRQ(baij->colmap); 3157b952d6SSatish Balay PLogObjectMemory(mat,baij->Nbs*sizeof(int)); 3257b952d6SSatish Balay PetscMemzero(baij->colmap,baij->Nbs*sizeof(int)); 33928fc39bSSatish Balay for ( i=0; i<nbs; i++ ) baij->colmap[baij->garray[i]] = i*bs+1; 343a40ed3dSBarry Smith PetscFunctionReturn(0); 3557b952d6SSatish Balay } 3657b952d6SSatish Balay 3780c1aa95SSatish Balay #define CHUNKSIZE 10 3880c1aa95SSatish Balay 39f5e9677aSSatish Balay #define MatSetValues_SeqBAIJ_A_Private(row,col,value,addv) \ 4080c1aa95SSatish Balay { \ 4180c1aa95SSatish Balay \ 4280c1aa95SSatish Balay brow = row/bs; \ 4380c1aa95SSatish Balay rp = aj + ai[brow]; ap = aa + bs2*ai[brow]; \ 44ac7a638eSSatish Balay rmax = aimax[brow]; nrow = ailen[brow]; \ 4580c1aa95SSatish Balay bcol = col/bs; \ 4680c1aa95SSatish Balay ridx = row % bs; cidx = col % bs; \ 47ab26458aSBarry Smith low = 0; high = nrow; \ 48ab26458aSBarry Smith while (high-low > 3) { \ 49ab26458aSBarry Smith t = (low+high)/2; \ 50ab26458aSBarry Smith if (rp[t] > bcol) high = t; \ 51ab26458aSBarry Smith else low = t; \ 52ab26458aSBarry Smith } \ 53ab26458aSBarry Smith for ( _i=low; _i<high; _i++ ) { \ 5480c1aa95SSatish Balay if (rp[_i] > bcol) break; \ 5580c1aa95SSatish Balay if (rp[_i] == bcol) { \ 5680c1aa95SSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 57eada6651SSatish Balay if (addv == ADD_VALUES) *bap += value; \ 58eada6651SSatish Balay else *bap = value; \ 59ac7a638eSSatish Balay goto a_noinsert; \ 6080c1aa95SSatish Balay } \ 6180c1aa95SSatish Balay } \ 6289280ab3SLois Curfman McInnes if (a->nonew == 1) goto a_noinsert; \ 63a8c6a408SBarry Smith else if (a->nonew == -1) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Inserting a new nonzero into matrix"); \ 6480c1aa95SSatish Balay if (nrow >= rmax) { \ 6580c1aa95SSatish Balay /* there is no extra room in row, therefore enlarge */ \ 6680c1aa95SSatish Balay int new_nz = ai[a->mbs] + CHUNKSIZE,len,*new_i,*new_j; \ 6780c1aa95SSatish Balay Scalar *new_a; \ 6880c1aa95SSatish Balay \ 69a8c6a408SBarry Smith if (a->nonew == -2) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Inserting a new nonzero in the matrix"); \ 7089280ab3SLois Curfman McInnes \ 7180c1aa95SSatish Balay /* malloc new storage space */ \ 7280c1aa95SSatish Balay len = new_nz*(sizeof(int)+bs2*sizeof(Scalar))+(a->mbs+1)*sizeof(int); \ 7380c1aa95SSatish Balay new_a = (Scalar *) PetscMalloc( len ); CHKPTRQ(new_a); \ 7480c1aa95SSatish Balay new_j = (int *) (new_a + bs2*new_nz); \ 7580c1aa95SSatish Balay new_i = new_j + new_nz; \ 7680c1aa95SSatish Balay \ 7780c1aa95SSatish Balay /* copy over old data into new slots */ \ 7880c1aa95SSatish Balay for ( ii=0; ii<brow+1; ii++ ) {new_i[ii] = ai[ii];} \ 7980c1aa95SSatish Balay for ( ii=brow+1; ii<a->mbs+1; ii++ ) {new_i[ii] = ai[ii]+CHUNKSIZE;} \ 8080c1aa95SSatish Balay PetscMemcpy(new_j,aj,(ai[brow]+nrow)*sizeof(int)); \ 8180c1aa95SSatish Balay len = (new_nz - CHUNKSIZE - ai[brow] - nrow); \ 8280c1aa95SSatish Balay PetscMemcpy(new_j+ai[brow]+nrow+CHUNKSIZE,aj+ai[brow]+nrow, \ 8380c1aa95SSatish Balay len*sizeof(int)); \ 8480c1aa95SSatish Balay PetscMemcpy(new_a,aa,(ai[brow]+nrow)*bs2*sizeof(Scalar)); \ 8580c1aa95SSatish Balay PetscMemzero(new_a+bs2*(ai[brow]+nrow),bs2*CHUNKSIZE*sizeof(Scalar)); \ 8680c1aa95SSatish Balay PetscMemcpy(new_a+bs2*(ai[brow]+nrow+CHUNKSIZE), \ 8780c1aa95SSatish Balay aa+bs2*(ai[brow]+nrow),bs2*len*sizeof(Scalar)); \ 8880c1aa95SSatish Balay /* free up old matrix storage */ \ 8980c1aa95SSatish Balay PetscFree(a->a); \ 9080c1aa95SSatish Balay if (!a->singlemalloc) {PetscFree(a->i);PetscFree(a->j);} \ 9180c1aa95SSatish Balay aa = a->a = new_a; ai = a->i = new_i; aj = a->j = new_j; \ 9280c1aa95SSatish Balay a->singlemalloc = 1; \ 9380c1aa95SSatish Balay \ 9480c1aa95SSatish Balay rp = aj + ai[brow]; ap = aa + bs2*ai[brow]; \ 95ac7a638eSSatish Balay rmax = aimax[brow] = aimax[brow] + CHUNKSIZE; \ 9680c1aa95SSatish Balay PLogObjectMemory(A,CHUNKSIZE*(sizeof(int) + bs2*sizeof(Scalar))); \ 9780c1aa95SSatish Balay a->maxnz += bs2*CHUNKSIZE; \ 9880c1aa95SSatish Balay a->reallocs++; \ 9980c1aa95SSatish Balay a->nz++; \ 10080c1aa95SSatish Balay } \ 10180c1aa95SSatish Balay N = nrow++ - 1; \ 10280c1aa95SSatish Balay /* shift up all the later entries in this row */ \ 10380c1aa95SSatish Balay for ( ii=N; ii>=_i; ii-- ) { \ 10480c1aa95SSatish Balay rp[ii+1] = rp[ii]; \ 10580c1aa95SSatish Balay PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(Scalar)); \ 10680c1aa95SSatish Balay } \ 10780c1aa95SSatish Balay if (N>=_i) PetscMemzero(ap+bs2*_i,bs2*sizeof(Scalar)); \ 10880c1aa95SSatish Balay rp[_i] = bcol; \ 10980c1aa95SSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 110ac7a638eSSatish Balay a_noinsert:; \ 11180c1aa95SSatish Balay ailen[brow] = nrow; \ 11280c1aa95SSatish Balay } 11357b952d6SSatish Balay 114ac7a638eSSatish Balay #define MatSetValues_SeqBAIJ_B_Private(row,col,value,addv) \ 115ac7a638eSSatish Balay { \ 116ac7a638eSSatish Balay \ 117ac7a638eSSatish Balay brow = row/bs; \ 118ac7a638eSSatish Balay rp = bj + bi[brow]; ap = ba + bs2*bi[brow]; \ 119ac7a638eSSatish Balay rmax = bimax[brow]; nrow = bilen[brow]; \ 120ac7a638eSSatish Balay bcol = col/bs; \ 121ac7a638eSSatish Balay ridx = row % bs; cidx = col % bs; \ 122ac7a638eSSatish Balay low = 0; high = nrow; \ 123ac7a638eSSatish Balay while (high-low > 3) { \ 124ac7a638eSSatish Balay t = (low+high)/2; \ 125ac7a638eSSatish Balay if (rp[t] > bcol) high = t; \ 126ac7a638eSSatish Balay else low = t; \ 127ac7a638eSSatish Balay } \ 128ac7a638eSSatish Balay for ( _i=low; _i<high; _i++ ) { \ 129ac7a638eSSatish Balay if (rp[_i] > bcol) break; \ 130ac7a638eSSatish Balay if (rp[_i] == bcol) { \ 131ac7a638eSSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 132ac7a638eSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 133ac7a638eSSatish Balay else *bap = value; \ 134ac7a638eSSatish Balay goto b_noinsert; \ 135ac7a638eSSatish Balay } \ 136ac7a638eSSatish Balay } \ 13789280ab3SLois Curfman McInnes if (b->nonew == 1) goto b_noinsert; \ 138a8c6a408SBarry Smith else if (b->nonew == -1) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Inserting a new nonzero into matrix"); \ 139ac7a638eSSatish Balay if (nrow >= rmax) { \ 140ac7a638eSSatish Balay /* there is no extra room in row, therefore enlarge */ \ 14174c639caSSatish Balay int new_nz = bi[b->mbs] + CHUNKSIZE,len,*new_i,*new_j; \ 142ac7a638eSSatish Balay Scalar *new_a; \ 143ac7a638eSSatish Balay \ 144a8c6a408SBarry Smith if (b->nonew == -2) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Inserting a new nonzero in the matrix"); \ 14589280ab3SLois Curfman McInnes \ 146ac7a638eSSatish Balay /* malloc new storage space */ \ 14774c639caSSatish Balay len = new_nz*(sizeof(int)+bs2*sizeof(Scalar))+(b->mbs+1)*sizeof(int); \ 148ac7a638eSSatish Balay new_a = (Scalar *) PetscMalloc( len ); CHKPTRQ(new_a); \ 149ac7a638eSSatish Balay new_j = (int *) (new_a + bs2*new_nz); \ 150ac7a638eSSatish Balay new_i = new_j + new_nz; \ 151ac7a638eSSatish Balay \ 152ac7a638eSSatish Balay /* copy over old data into new slots */ \ 153ac7a638eSSatish Balay for ( ii=0; ii<brow+1; ii++ ) {new_i[ii] = bi[ii];} \ 15474c639caSSatish Balay for ( ii=brow+1; ii<b->mbs+1; ii++ ) {new_i[ii] = bi[ii]+CHUNKSIZE;} \ 155ac7a638eSSatish Balay PetscMemcpy(new_j,bj,(bi[brow]+nrow)*sizeof(int)); \ 156ac7a638eSSatish Balay len = (new_nz - CHUNKSIZE - bi[brow] - nrow); \ 157ac7a638eSSatish Balay PetscMemcpy(new_j+bi[brow]+nrow+CHUNKSIZE,bj+bi[brow]+nrow, \ 158ac7a638eSSatish Balay len*sizeof(int)); \ 159ac7a638eSSatish Balay PetscMemcpy(new_a,ba,(bi[brow]+nrow)*bs2*sizeof(Scalar)); \ 160ac7a638eSSatish Balay PetscMemzero(new_a+bs2*(bi[brow]+nrow),bs2*CHUNKSIZE*sizeof(Scalar)); \ 161ac7a638eSSatish Balay PetscMemcpy(new_a+bs2*(bi[brow]+nrow+CHUNKSIZE), \ 162ac7a638eSSatish Balay ba+bs2*(bi[brow]+nrow),bs2*len*sizeof(Scalar)); \ 163ac7a638eSSatish Balay /* free up old matrix storage */ \ 16474c639caSSatish Balay PetscFree(b->a); \ 16574c639caSSatish Balay if (!b->singlemalloc) {PetscFree(b->i);PetscFree(b->j);} \ 16674c639caSSatish Balay ba = b->a = new_a; bi = b->i = new_i; bj = b->j = new_j; \ 16774c639caSSatish Balay b->singlemalloc = 1; \ 168ac7a638eSSatish Balay \ 169ac7a638eSSatish Balay rp = bj + bi[brow]; ap = ba + bs2*bi[brow]; \ 170ac7a638eSSatish Balay rmax = bimax[brow] = bimax[brow] + CHUNKSIZE; \ 17174c639caSSatish Balay PLogObjectMemory(B,CHUNKSIZE*(sizeof(int) + bs2*sizeof(Scalar))); \ 17274c639caSSatish Balay b->maxnz += bs2*CHUNKSIZE; \ 17374c639caSSatish Balay b->reallocs++; \ 17474c639caSSatish Balay b->nz++; \ 175ac7a638eSSatish Balay } \ 176ac7a638eSSatish Balay N = nrow++ - 1; \ 177ac7a638eSSatish Balay /* shift up all the later entries in this row */ \ 178ac7a638eSSatish Balay for ( ii=N; ii>=_i; ii-- ) { \ 179ac7a638eSSatish Balay rp[ii+1] = rp[ii]; \ 180ac7a638eSSatish Balay PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(Scalar)); \ 181ac7a638eSSatish Balay } \ 182ac7a638eSSatish Balay if (N>=_i) PetscMemzero(ap+bs2*_i,bs2*sizeof(Scalar)); \ 183ac7a638eSSatish Balay rp[_i] = bcol; \ 184ac7a638eSSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 185ac7a638eSSatish Balay b_noinsert:; \ 186ac7a638eSSatish Balay bilen[brow] = nrow; \ 187ac7a638eSSatish Balay } 188ac7a638eSSatish Balay 1895615d1e5SSatish Balay #undef __FUNC__ 1905615d1e5SSatish Balay #define __FUNC__ "MatSetValues_MPIBAIJ" 191ec1ea8d8SLois Curfman McInnes int MatSetValues_MPIBAIJ(Mat mat,int m,int *im,int n,int *in,Scalar *v,InsertMode addv) 19257b952d6SSatish Balay { 19357b952d6SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *) mat->data; 19457b952d6SSatish Balay Scalar value; 1954fa0d573SSatish Balay int ierr,i,j,row,col; 1964fa0d573SSatish Balay int roworiented = baij->roworiented,rstart_orig=baij->rstart_bs ; 1974fa0d573SSatish Balay int rend_orig=baij->rend_bs,cstart_orig=baij->cstart_bs; 1984fa0d573SSatish Balay int cend_orig=baij->cend_bs,bs=baij->bs; 19957b952d6SSatish Balay 200eada6651SSatish Balay /* Some Variables required in the macro */ 20180c1aa95SSatish Balay Mat A = baij->A; 20280c1aa95SSatish Balay Mat_SeqBAIJ *a = (Mat_SeqBAIJ *) (A)->data; 203ac7a638eSSatish Balay int *aimax=a->imax,*ai=a->i,*ailen=a->ilen,*aj=a->j; 204ac7a638eSSatish Balay Scalar *aa=a->a; 205ac7a638eSSatish Balay 206ac7a638eSSatish Balay Mat B = baij->B; 207ac7a638eSSatish Balay Mat_SeqBAIJ *b = (Mat_SeqBAIJ *) (B)->data; 208ac7a638eSSatish Balay int *bimax=b->imax,*bi=b->i,*bilen=b->ilen,*bj=b->j; 209ac7a638eSSatish Balay Scalar *ba=b->a; 210ac7a638eSSatish Balay 211ac7a638eSSatish Balay int *rp,ii,nrow,_i,rmax,N,brow,bcol; 212ab26458aSBarry Smith int low,high,t,ridx,cidx,bs2=a->bs2; 213ac7a638eSSatish Balay Scalar *ap,*bap; 21480c1aa95SSatish Balay 215d64ed03dSBarry Smith PetscFunctionBegin; 21657b952d6SSatish Balay for ( i=0; i<m; i++ ) { 2173a40ed3dSBarry Smith #if defined(USE_PETSC_BOPT_g) 218a8c6a408SBarry Smith if (im[i] < 0) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Negative row"); 219a8c6a408SBarry Smith if (im[i] >= baij->M) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Row too large"); 220639f9d9dSBarry Smith #endif 22157b952d6SSatish Balay if (im[i] >= rstart_orig && im[i] < rend_orig) { 22257b952d6SSatish Balay row = im[i] - rstart_orig; 22357b952d6SSatish Balay for ( j=0; j<n; j++ ) { 22457b952d6SSatish Balay if (in[j] >= cstart_orig && in[j] < cend_orig){ 22557b952d6SSatish Balay col = in[j] - cstart_orig; 22657b952d6SSatish Balay if (roworiented) value = v[i*n+j]; else value = v[i+j*m]; 227f5e9677aSSatish Balay MatSetValues_SeqBAIJ_A_Private(row,col,value,addv); 22880c1aa95SSatish Balay /* ierr = MatSetValues_SeqBAIJ(baij->A,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 22957b952d6SSatish Balay } 2303a40ed3dSBarry Smith #if defined(USE_PETSC_BOPT_g) 231a8c6a408SBarry Smith else if (in[j] < 0) {SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Negative column");} 232a8c6a408SBarry Smith else if (in[j] >= baij->N) {SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Col too large");} 233639f9d9dSBarry Smith #endif 23457b952d6SSatish Balay else { 23557b952d6SSatish Balay if (mat->was_assembled) { 236905e6a2fSBarry Smith if (!baij->colmap) { 237905e6a2fSBarry Smith ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 238905e6a2fSBarry Smith } 239905e6a2fSBarry Smith col = baij->colmap[in[j]/bs] - 1 + in[j]%bs; 24057b952d6SSatish Balay if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) { 24157b952d6SSatish Balay ierr = DisAssemble_MPIBAIJ(mat); CHKERRQ(ierr); 24257b952d6SSatish Balay col = in[j]; 2439bf004c3SSatish Balay /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */ 2449bf004c3SSatish Balay B = baij->B; 2459bf004c3SSatish Balay b = (Mat_SeqBAIJ *) (B)->data; 2469bf004c3SSatish Balay bimax=b->imax;bi=b->i;bilen=b->ilen;bj=b->j; 2479bf004c3SSatish Balay ba=b->a; 24857b952d6SSatish Balay } 249d64ed03dSBarry Smith } else col = in[j]; 25057b952d6SSatish Balay if (roworiented) value = v[i*n+j]; else value = v[i+j*m]; 251ac7a638eSSatish Balay MatSetValues_SeqBAIJ_B_Private(row,col,value,addv); 252ac7a638eSSatish Balay /* ierr = MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 25357b952d6SSatish Balay } 25457b952d6SSatish Balay } 255d64ed03dSBarry Smith } else { 25690f02eecSBarry Smith if (roworiented && !baij->donotstash) { 25757b952d6SSatish Balay ierr = StashValues_Private(&baij->stash,im[i],n,in,v+i*n,addv);CHKERRQ(ierr); 258d64ed03dSBarry Smith } else { 25990f02eecSBarry Smith if (!baij->donotstash) { 26057b952d6SSatish Balay row = im[i]; 26157b952d6SSatish Balay for ( j=0; j<n; j++ ) { 26257b952d6SSatish Balay ierr = StashValues_Private(&baij->stash,row,1,in+j,v+i+j*m,addv);CHKERRQ(ierr); 26357b952d6SSatish Balay } 26457b952d6SSatish Balay } 26557b952d6SSatish Balay } 26657b952d6SSatish Balay } 26790f02eecSBarry Smith } 2683a40ed3dSBarry Smith PetscFunctionReturn(0); 26957b952d6SSatish Balay } 27057b952d6SSatish Balay 271ab26458aSBarry Smith extern int MatSetValuesBlocked_SeqBAIJ(Mat,int,int*,int,int*,Scalar*,InsertMode); 272ab26458aSBarry Smith #undef __FUNC__ 273ab26458aSBarry Smith #define __FUNC__ "MatSetValuesBlocked_MPIBAIJ" 274ec1ea8d8SLois Curfman McInnes int MatSetValuesBlocked_MPIBAIJ(Mat mat,int m,int *im,int n,int *in,Scalar *v,InsertMode addv) 275ab26458aSBarry Smith { 276ab26458aSBarry Smith Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *) mat->data; 27730793edcSSatish Balay Scalar *value,*barray=baij->barray; 278abef11f7SSatish Balay int ierr,i,j,ii,jj,row,col,k,l; 279ab26458aSBarry Smith int roworiented = baij->roworiented,rstart=baij->rstart ; 280ab26458aSBarry Smith int rend=baij->rend,cstart=baij->cstart,stepval; 281ab26458aSBarry Smith int cend=baij->cend,bs=baij->bs,bs2=baij->bs2; 282ab26458aSBarry Smith 28330793edcSSatish Balay if(!barray) { 28447513183SBarry Smith baij->barray = barray = (Scalar*) PetscMalloc(bs2*sizeof(Scalar)); CHKPTRQ(barray); 28530793edcSSatish Balay } 28630793edcSSatish Balay 287ab26458aSBarry Smith if (roworiented) { 288ab26458aSBarry Smith stepval = (n-1)*bs; 289ab26458aSBarry Smith } else { 290ab26458aSBarry Smith stepval = (m-1)*bs; 291ab26458aSBarry Smith } 292ab26458aSBarry Smith for ( i=0; i<m; i++ ) { 2933a40ed3dSBarry Smith #if defined(USE_PETSC_BOPT_g) 294a8c6a408SBarry Smith if (im[i] < 0) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Negative row"); 295a8c6a408SBarry Smith if (im[i] >= baij->Mbs) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Row too large"); 296ab26458aSBarry Smith #endif 297ab26458aSBarry Smith if (im[i] >= rstart && im[i] < rend) { 298ab26458aSBarry Smith row = im[i] - rstart; 299ab26458aSBarry Smith for ( j=0; j<n; j++ ) { 30015b57d14SSatish Balay /* If NumCol = 1 then a copy is not required */ 30115b57d14SSatish Balay if ((roworiented) && (n == 1)) { 30215b57d14SSatish Balay barray = v + i*bs2; 30315b57d14SSatish Balay } else if((!roworiented) && (m == 1)) { 30415b57d14SSatish Balay barray = v + j*bs2; 30515b57d14SSatish Balay } else { /* Here a copy is required */ 306ab26458aSBarry Smith if (roworiented) { 307ab26458aSBarry Smith value = v + i*(stepval+bs)*bs + j*bs; 308ab26458aSBarry Smith } else { 309ab26458aSBarry Smith value = v + j*(stepval+bs)*bs + i*bs; 310abef11f7SSatish Balay } 31147513183SBarry Smith for ( ii=0; ii<bs; ii++,value+=stepval ) { 31247513183SBarry Smith for (jj=0; jj<bs; jj++ ) { 31330793edcSSatish Balay *barray++ = *value++; 31447513183SBarry Smith } 31547513183SBarry Smith } 31630793edcSSatish Balay barray -=bs2; 31715b57d14SSatish Balay } 318abef11f7SSatish Balay 319abef11f7SSatish Balay if (in[j] >= cstart && in[j] < cend){ 320abef11f7SSatish Balay col = in[j] - cstart; 32130793edcSSatish Balay ierr = MatSetValuesBlocked_SeqBAIJ(baij->A,1,&row,1,&col,barray,addv);CHKERRQ(ierr); 322ab26458aSBarry Smith } 3233a40ed3dSBarry Smith #if defined(USE_PETSC_BOPT_g) 324a8c6a408SBarry Smith else if (in[j] < 0) {SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Negative column");} 325a8c6a408SBarry Smith else if (in[j] >= baij->Nbs) {SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Column too large");} 326ab26458aSBarry Smith #endif 327ab26458aSBarry Smith else { 328ab26458aSBarry Smith if (mat->was_assembled) { 329ab26458aSBarry Smith if (!baij->colmap) { 330ab26458aSBarry Smith ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 331ab26458aSBarry Smith } 332a5eb4965SSatish Balay 3333a40ed3dSBarry Smith #if defined(USE_PETSC_BOPT_g) 334a8c6a408SBarry Smith if ((baij->colmap[in[j]] - 1) % bs) {SETERRQ(PETSC_ERR_PLIB,0,"Incorrect colmap");} 335a5eb4965SSatish Balay #endif 336a5eb4965SSatish Balay col = (baij->colmap[in[j]] - 1)/bs; 337ab26458aSBarry Smith if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) { 338ab26458aSBarry Smith ierr = DisAssemble_MPIBAIJ(mat); CHKERRQ(ierr); 339ab26458aSBarry Smith col = in[j]; 340ab26458aSBarry Smith } 341ab26458aSBarry Smith } 342ab26458aSBarry Smith else col = in[j]; 34330793edcSSatish Balay ierr = MatSetValuesBlocked_SeqBAIJ(baij->B,1,&row,1,&col,barray,addv);CHKERRQ(ierr); 344ab26458aSBarry Smith } 345ab26458aSBarry Smith } 346d64ed03dSBarry Smith } else { 347ab26458aSBarry Smith if (!baij->donotstash) { 348ab26458aSBarry Smith if (roworiented ) { 349abef11f7SSatish Balay row = im[i]*bs; 350abef11f7SSatish Balay value = v + i*(stepval+bs)*bs; 351abef11f7SSatish Balay for ( j=0; j<bs; j++,row++ ) { 352abef11f7SSatish Balay for ( k=0; k<n; k++ ) { 353abef11f7SSatish Balay for ( col=in[k]*bs,l=0; l<bs; l++,col++) { 354abef11f7SSatish Balay ierr = StashValues_Private(&baij->stash,row,1,&col,value++,addv);CHKERRQ(ierr); 355abef11f7SSatish Balay } 356ab26458aSBarry Smith } 357ab26458aSBarry Smith } 358d64ed03dSBarry Smith } else { 359ab26458aSBarry Smith for ( j=0; j<n; j++ ) { 360abef11f7SSatish Balay value = v + j*(stepval+bs)*bs + i*bs; 361abef11f7SSatish Balay col = in[j]*bs; 362abef11f7SSatish Balay for ( k=0; k<bs; k++,col++,value+=stepval) { 363abef11f7SSatish Balay for ( row = im[i]*bs,l=0; l<bs; l++,row++) { 364abef11f7SSatish Balay ierr = StashValues_Private(&baij->stash,row,1,&col,value++,addv);CHKERRQ(ierr); 365ab26458aSBarry Smith } 366ab26458aSBarry Smith } 367ab26458aSBarry Smith } 368abef11f7SSatish Balay } 369abef11f7SSatish Balay } 370ab26458aSBarry Smith } 371ab26458aSBarry Smith } 3723a40ed3dSBarry Smith PetscFunctionReturn(0); 373ab26458aSBarry Smith } 3740bdbc534SSatish Balay #include <math.h> 3750bdbc534SSatish Balay #define HASH_KEY 0.6180339887 3760bdbc534SSatish Balay #define HASH1(size,key) ((int)((size)*fmod(((key)*HASH_KEY),1))) 377ab26458aSBarry Smith 3785615d1e5SSatish Balay #undef __FUNC__ 3790bdbc534SSatish Balay #define __FUNC__ "MatSetValues_MPIBAIJ_HT" 3800bdbc534SSatish Balay int MatSetValues_MPIBAIJ_HT(Mat mat,int m,int *im,int n,int *in,Scalar *v,InsertMode addv) 3810bdbc534SSatish Balay { 3820bdbc534SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *) mat->data; 3830bdbc534SSatish Balay int ierr,i,j,row,col; 3840bdbc534SSatish Balay int roworiented = baij->roworiented,rstart_orig=baij->rstart_bs ; 3850bdbc534SSatish Balay int rend_orig=baij->rend_bs; 3860bdbc534SSatish Balay 3870bdbc534SSatish Balay int h1,key,size=baij->ht_size,k,bs=baij->bs; 388fef45726SSatish Balay int * HT = baij->ht; 3890bdbc534SSatish Balay Scalar ** HD = (Scalar **)(HT + size),value; 3900bdbc534SSatish Balay 3910bdbc534SSatish Balay 3920bdbc534SSatish Balay PetscFunctionBegin; 3930bdbc534SSatish Balay 3940bdbc534SSatish Balay for ( i=0; i<m; i++ ) { 3950bdbc534SSatish Balay #if defined(USE_PETSC_BOPT_g) 3960bdbc534SSatish Balay if (im[i] < 0) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Negative row"); 3970bdbc534SSatish Balay if (im[i] >= baij->M) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Row too large"); 3980bdbc534SSatish Balay #endif 3990bdbc534SSatish Balay if (im[i] >= rstart_orig && im[i] < rend_orig) { 4000bdbc534SSatish Balay row = im[i]; 4010bdbc534SSatish Balay for ( j=0; j<n; j++ ) { 4020bdbc534SSatish Balay col = in[j]; 4030bdbc534SSatish Balay if (roworiented) value = v[i*n+j]; else value = v[i+j*m]; 4040bdbc534SSatish Balay /* Look up into the Hash Table */ 4050bdbc534SSatish Balay key = (row/bs)*baij->Nbs+(col/bs)+1; 4060bdbc534SSatish Balay h1 = HASH1(size,key); 4070bdbc534SSatish Balay 4080bdbc534SSatish Balay for ( k=0; k<size; k++ ){ 4090bdbc534SSatish Balay if (HT[(h1+k)%size] == key) { 4100bdbc534SSatish Balay if (addv == ADD_VALUES) *(HD[(h1+k)%size]+ (col % bs)*bs + row % bs) += value; 4110bdbc534SSatish Balay else *(HD[(h1+k)%size]+ (col % bs)*bs + row % bs) = value; 4120bdbc534SSatish Balay break; 4130bdbc534SSatish Balay } 4140bdbc534SSatish Balay } 415*a74b47caSSatish Balay if ( k==size) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"(row,col) has no entry in the hash table"); 4160bdbc534SSatish Balay } 4170bdbc534SSatish Balay } else { 4180bdbc534SSatish Balay if (roworiented && !baij->donotstash) { 4190bdbc534SSatish Balay ierr = StashValues_Private(&baij->stash,im[i],n,in,v+i*n,addv);CHKERRQ(ierr); 4200bdbc534SSatish Balay } else { 4210bdbc534SSatish Balay if (!baij->donotstash) { 4220bdbc534SSatish Balay row = im[i]; 4230bdbc534SSatish Balay for ( j=0; j<n; j++ ) { 4240bdbc534SSatish Balay ierr = StashValues_Private(&baij->stash,row,1,in+j,v+i+j*m,addv);CHKERRQ(ierr); 4250bdbc534SSatish Balay } 4260bdbc534SSatish Balay } 4270bdbc534SSatish Balay } 4280bdbc534SSatish Balay } 4290bdbc534SSatish Balay } 4300bdbc534SSatish Balay PetscFunctionReturn(0); 4310bdbc534SSatish Balay } 4320bdbc534SSatish Balay 4330bdbc534SSatish Balay #undef __FUNC__ 4340bdbc534SSatish Balay #define __FUNC__ "MatSetValuesBlocked_MPIBAIJ_HT" 4350bdbc534SSatish Balay int MatSetValuesBlocked_MPIBAIJ_HT(Mat mat,int m,int *im,int n,int *in,Scalar *v,InsertMode addv) 4360bdbc534SSatish Balay { 4370bdbc534SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *) mat->data; 4380bdbc534SSatish Balay int ierr,i,j,ii,jj,row,col,k,l; 4390bdbc534SSatish Balay int roworiented = baij->roworiented,rstart=baij->rstart ; 440b4cc0f5aSSatish Balay int rend=baij->rend,stepval,bs=baij->bs,bs2=baij->bs2; 4410bdbc534SSatish Balay 4420bdbc534SSatish Balay int h1,key,size=baij->ht_size; 443fef45726SSatish Balay int * HT = baij->ht; 4440bdbc534SSatish Balay Scalar ** HD = (Scalar **)(HT + size),*value,*baij_a; 4450bdbc534SSatish Balay 446d0a41580SSatish Balay PetscFunctionBegin; 447d0a41580SSatish Balay 4480bdbc534SSatish Balay if (roworiented) { 4490bdbc534SSatish Balay stepval = (n-1)*bs; 4500bdbc534SSatish Balay } else { 4510bdbc534SSatish Balay stepval = (m-1)*bs; 4520bdbc534SSatish Balay } 4530bdbc534SSatish Balay for ( i=0; i<m; i++ ) { 4540bdbc534SSatish Balay #if defined(USE_PETSC_BOPT_g) 4550bdbc534SSatish Balay if (im[i] < 0) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Negative row"); 4560bdbc534SSatish Balay if (im[i] >= baij->Mbs) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Row too large"); 4570bdbc534SSatish Balay #endif 4580bdbc534SSatish Balay if (im[i] >= rstart && im[i] < rend) { 4590bdbc534SSatish Balay row = im[i]; 4600bdbc534SSatish Balay for ( j=0; j<n; j++ ) { 4610bdbc534SSatish Balay col = in[j]; 4620bdbc534SSatish Balay 4630bdbc534SSatish Balay /* Look up into the Hash Table */ 4640bdbc534SSatish Balay key = row*baij->Nbs+col+1; 4650bdbc534SSatish Balay h1 = HASH1(size,key); 4660bdbc534SSatish Balay 4670bdbc534SSatish Balay for ( k=0; k<size; k++ ){ 4680bdbc534SSatish Balay if (HT[(h1+k)%size] == key) { 4690bdbc534SSatish Balay baij_a = HD[(h1+k)%size]; 4700bdbc534SSatish Balay 4710bdbc534SSatish Balay if (roworiented) { 4720bdbc534SSatish Balay value = v + i*(stepval+bs)*bs + j*bs; 473fef45726SSatish Balay if (addv == ADD_VALUES) { 474b4cc0f5aSSatish Balay for ( ii=0; ii<bs; ii++,value+=stepval,baij_a++ ) { 475b4cc0f5aSSatish Balay for ( jj=0; jj<bs2; jj+=bs ) { 476fef45726SSatish Balay baij_a[jj] += *value++; 477b4cc0f5aSSatish Balay } 478b4cc0f5aSSatish Balay } 479fef45726SSatish Balay } else { 480fef45726SSatish Balay for ( ii=0; ii<bs; ii++,value+=stepval,baij_a++ ) { 481fef45726SSatish Balay for ( jj=0; jj<bs2; jj+=bs ) { 482fef45726SSatish Balay baij_a[jj] = *value++; 483fef45726SSatish Balay } 484fef45726SSatish Balay } 485fef45726SSatish Balay } 4860bdbc534SSatish Balay } else { 4870bdbc534SSatish Balay value = v + j*(stepval+bs)*bs + i*bs; 488fef45726SSatish Balay if (addv == ADD_VALUES) { 489b4cc0f5aSSatish Balay for ( ii=0; ii<bs; ii++,value+=stepval,baij_a+=bs ) { 4900bdbc534SSatish Balay for ( jj=0; jj<bs; jj++ ) { 491fef45726SSatish Balay baij_a[jj] += *value++; 492fef45726SSatish Balay } 493fef45726SSatish Balay } 494fef45726SSatish Balay } else { 495fef45726SSatish Balay for ( ii=0; ii<bs; ii++,value+=stepval,baij_a+=bs ) { 496fef45726SSatish Balay for ( jj=0; jj<bs; jj++ ) { 497fef45726SSatish Balay baij_a[jj] = *value++; 498fef45726SSatish Balay } 499b4cc0f5aSSatish Balay } 5000bdbc534SSatish Balay } 5010bdbc534SSatish Balay } 5020bdbc534SSatish Balay break; 5030bdbc534SSatish Balay } 5040bdbc534SSatish Balay } 505fef45726SSatish Balay if ( k==size) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"(row,col) has no entry in the hash table"); 5060bdbc534SSatish Balay } 5070bdbc534SSatish Balay } else { 5080bdbc534SSatish Balay if (!baij->donotstash) { 5090bdbc534SSatish Balay if (roworiented ) { 5100bdbc534SSatish Balay row = im[i]*bs; 5110bdbc534SSatish Balay value = v + i*(stepval+bs)*bs; 5120bdbc534SSatish Balay for ( j=0; j<bs; j++,row++ ) { 5130bdbc534SSatish Balay for ( k=0; k<n; k++ ) { 5140bdbc534SSatish Balay for ( col=in[k]*bs,l=0; l<bs; l++,col++) { 5150bdbc534SSatish Balay ierr = StashValues_Private(&baij->stash,row,1,&col,value++,addv);CHKERRQ(ierr); 5160bdbc534SSatish Balay } 5170bdbc534SSatish Balay } 5180bdbc534SSatish Balay } 5190bdbc534SSatish Balay } else { 5200bdbc534SSatish Balay for ( j=0; j<n; j++ ) { 5210bdbc534SSatish Balay value = v + j*(stepval+bs)*bs + i*bs; 5220bdbc534SSatish Balay col = in[j]*bs; 5230bdbc534SSatish Balay for ( k=0; k<bs; k++,col++,value+=stepval) { 5240bdbc534SSatish Balay for ( row = im[i]*bs,l=0; l<bs; l++,row++) { 5250bdbc534SSatish Balay ierr = StashValues_Private(&baij->stash,row,1,&col,value++,addv);CHKERRQ(ierr); 5260bdbc534SSatish Balay } 5270bdbc534SSatish Balay } 5280bdbc534SSatish Balay } 5290bdbc534SSatish Balay } 5300bdbc534SSatish Balay } 5310bdbc534SSatish Balay } 5320bdbc534SSatish Balay } 5330bdbc534SSatish Balay PetscFunctionReturn(0); 5340bdbc534SSatish Balay } 5350bdbc534SSatish Balay #undef __FUNC__ 5365615d1e5SSatish Balay #define __FUNC__ "MatGetValues_MPIBAIJ" 537ec1ea8d8SLois Curfman McInnes int MatGetValues_MPIBAIJ(Mat mat,int m,int *idxm,int n,int *idxn,Scalar *v) 538d6de1c52SSatish Balay { 539d6de1c52SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *) mat->data; 540d6de1c52SSatish Balay int bs=baij->bs,ierr,i,j, bsrstart = baij->rstart*bs, bsrend = baij->rend*bs; 541d6de1c52SSatish Balay int bscstart = baij->cstart*bs, bscend = baij->cend*bs,row,col; 542d6de1c52SSatish Balay 543d6de1c52SSatish Balay for ( i=0; i<m; i++ ) { 544a8c6a408SBarry Smith if (idxm[i] < 0) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Negative row"); 545a8c6a408SBarry Smith if (idxm[i] >= baij->M) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Row too large"); 546d6de1c52SSatish Balay if (idxm[i] >= bsrstart && idxm[i] < bsrend) { 547d6de1c52SSatish Balay row = idxm[i] - bsrstart; 548d6de1c52SSatish Balay for ( j=0; j<n; j++ ) { 549a8c6a408SBarry Smith if (idxn[j] < 0) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Negative column"); 550a8c6a408SBarry Smith if (idxn[j] >= baij->N) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Column too large"); 551d6de1c52SSatish Balay if (idxn[j] >= bscstart && idxn[j] < bscend){ 552d6de1c52SSatish Balay col = idxn[j] - bscstart; 553d6de1c52SSatish Balay ierr = MatGetValues(baij->A,1,&row,1,&col,v+i*n+j); CHKERRQ(ierr); 554d64ed03dSBarry Smith } else { 555905e6a2fSBarry Smith if (!baij->colmap) { 556905e6a2fSBarry Smith ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 557905e6a2fSBarry Smith } 558e60e1c95SSatish Balay if((baij->colmap[idxn[j]/bs]-1 < 0) || 559dcb20de4SSatish Balay (baij->garray[(baij->colmap[idxn[j]/bs]-1)/bs] != idxn[j]/bs)) *(v+i*n+j) = 0.0; 560d9d09a02SSatish Balay else { 561dcb20de4SSatish Balay col = (baij->colmap[idxn[j]/bs]-1) + idxn[j]%bs; 562d6de1c52SSatish Balay ierr = MatGetValues(baij->B,1,&row,1,&col,v+i*n+j); CHKERRQ(ierr); 563d6de1c52SSatish Balay } 564d6de1c52SSatish Balay } 565d6de1c52SSatish Balay } 566d64ed03dSBarry Smith } else { 567a8c6a408SBarry Smith SETERRQ(PETSC_ERR_SUP,0,"Only local values currently supported"); 568d6de1c52SSatish Balay } 569d6de1c52SSatish Balay } 5703a40ed3dSBarry Smith PetscFunctionReturn(0); 571d6de1c52SSatish Balay } 572d6de1c52SSatish Balay 5735615d1e5SSatish Balay #undef __FUNC__ 5745615d1e5SSatish Balay #define __FUNC__ "MatNorm_MPIBAIJ" 575ec1ea8d8SLois Curfman McInnes int MatNorm_MPIBAIJ(Mat mat,NormType type,double *norm) 576d6de1c52SSatish Balay { 577d6de1c52SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *) mat->data; 578d6de1c52SSatish Balay Mat_SeqBAIJ *amat = (Mat_SeqBAIJ*) baij->A->data, *bmat = (Mat_SeqBAIJ*) baij->B->data; 579acdf5bf4SSatish Balay int ierr, i,bs2=baij->bs2; 580d6de1c52SSatish Balay double sum = 0.0; 581d6de1c52SSatish Balay Scalar *v; 582d6de1c52SSatish Balay 583d64ed03dSBarry Smith PetscFunctionBegin; 584d6de1c52SSatish Balay if (baij->size == 1) { 585d6de1c52SSatish Balay ierr = MatNorm(baij->A,type,norm); CHKERRQ(ierr); 586d6de1c52SSatish Balay } else { 587d6de1c52SSatish Balay if (type == NORM_FROBENIUS) { 588d6de1c52SSatish Balay v = amat->a; 589d6de1c52SSatish Balay for (i=0; i<amat->nz*bs2; i++ ) { 5903a40ed3dSBarry Smith #if defined(USE_PETSC_COMPLEX) 591d6de1c52SSatish Balay sum += real(conj(*v)*(*v)); v++; 592d6de1c52SSatish Balay #else 593d6de1c52SSatish Balay sum += (*v)*(*v); v++; 594d6de1c52SSatish Balay #endif 595d6de1c52SSatish Balay } 596d6de1c52SSatish Balay v = bmat->a; 597d6de1c52SSatish Balay for (i=0; i<bmat->nz*bs2; i++ ) { 5983a40ed3dSBarry Smith #if defined(USE_PETSC_COMPLEX) 599d6de1c52SSatish Balay sum += real(conj(*v)*(*v)); v++; 600d6de1c52SSatish Balay #else 601d6de1c52SSatish Balay sum += (*v)*(*v); v++; 602d6de1c52SSatish Balay #endif 603d6de1c52SSatish Balay } 604ca161407SBarry Smith ierr = MPI_Allreduce(&sum,norm,1,MPI_DOUBLE,MPI_SUM,mat->comm);CHKERRQ(ierr); 605d6de1c52SSatish Balay *norm = sqrt(*norm); 606d64ed03dSBarry Smith } else { 607e3372554SBarry Smith SETERRQ(PETSC_ERR_SUP,0,"No support for this norm yet"); 608d6de1c52SSatish Balay } 609d64ed03dSBarry Smith } 6103a40ed3dSBarry Smith PetscFunctionReturn(0); 611d6de1c52SSatish Balay } 61257b952d6SSatish Balay 6135615d1e5SSatish Balay #undef __FUNC__ 6145615d1e5SSatish Balay #define __FUNC__ "MatAssemblyBegin_MPIBAIJ" 615ec1ea8d8SLois Curfman McInnes int MatAssemblyBegin_MPIBAIJ(Mat mat,MatAssemblyType mode) 61657b952d6SSatish Balay { 61757b952d6SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *) mat->data; 61857b952d6SSatish Balay MPI_Comm comm = mat->comm; 61957b952d6SSatish Balay int size = baij->size, *owners = baij->rowners,bs=baij->bs; 62057b952d6SSatish Balay int rank = baij->rank,tag = mat->tag, *owner,*starts,count,ierr; 62157b952d6SSatish Balay MPI_Request *send_waits,*recv_waits; 62257b952d6SSatish Balay int *nprocs,i,j,idx,*procs,nsends,nreceives,nmax,*work; 62357b952d6SSatish Balay InsertMode addv; 62457b952d6SSatish Balay Scalar *rvalues,*svalues; 62557b952d6SSatish Balay 626d64ed03dSBarry Smith PetscFunctionBegin; 62757b952d6SSatish Balay /* make sure all processors are either in INSERTMODE or ADDMODE */ 628ca161407SBarry Smith ierr = MPI_Allreduce(&mat->insertmode,&addv,1,MPI_INT,MPI_BOR,comm);CHKERRQ(ierr); 62957b952d6SSatish Balay if (addv == (ADD_VALUES|INSERT_VALUES)) { 630a8c6a408SBarry Smith SETERRQ(PETSC_ERR_ARG_WRONGSTATE,0,"Some processors inserted others added"); 63157b952d6SSatish Balay } 632e0fa3b82SLois Curfman McInnes mat->insertmode = addv; /* in case this processor had no cache */ 63357b952d6SSatish Balay 63457b952d6SSatish Balay /* first count number of contributors to each processor */ 63557b952d6SSatish Balay nprocs = (int *) PetscMalloc( 2*size*sizeof(int) ); CHKPTRQ(nprocs); 63657b952d6SSatish Balay PetscMemzero(nprocs,2*size*sizeof(int)); procs = nprocs + size; 63757b952d6SSatish Balay owner = (int *) PetscMalloc( (baij->stash.n+1)*sizeof(int) ); CHKPTRQ(owner); 63857b952d6SSatish Balay for ( i=0; i<baij->stash.n; i++ ) { 63957b952d6SSatish Balay idx = baij->stash.idx[i]; 64057b952d6SSatish Balay for ( j=0; j<size; j++ ) { 64157b952d6SSatish Balay if (idx >= owners[j]*bs && idx < owners[j+1]*bs) { 64257b952d6SSatish Balay nprocs[j]++; procs[j] = 1; owner[i] = j; break; 64357b952d6SSatish Balay } 64457b952d6SSatish Balay } 64557b952d6SSatish Balay } 64657b952d6SSatish Balay nsends = 0; for ( i=0; i<size; i++ ) { nsends += procs[i];} 64757b952d6SSatish Balay 64857b952d6SSatish Balay /* inform other processors of number of messages and max length*/ 64957b952d6SSatish Balay work = (int *) PetscMalloc( size*sizeof(int) ); CHKPTRQ(work); 650ca161407SBarry Smith ierr = MPI_Allreduce(procs, work,size,MPI_INT,MPI_SUM,comm);CHKERRQ(ierr); 65157b952d6SSatish Balay nreceives = work[rank]; 652ca161407SBarry Smith ierr = MPI_Allreduce( nprocs, work,size,MPI_INT,MPI_MAX,comm);CHKERRQ(ierr); 65357b952d6SSatish Balay nmax = work[rank]; 65457b952d6SSatish Balay PetscFree(work); 65557b952d6SSatish Balay 65657b952d6SSatish Balay /* post receives: 65757b952d6SSatish Balay 1) each message will consist of ordered pairs 65857b952d6SSatish Balay (global index,value) we store the global index as a double 65957b952d6SSatish Balay to simplify the message passing. 66057b952d6SSatish Balay 2) since we don't know how long each individual message is we 66157b952d6SSatish Balay allocate the largest needed buffer for each receive. Potentially 66257b952d6SSatish Balay this is a lot of wasted space. 66357b952d6SSatish Balay 66457b952d6SSatish Balay 66557b952d6SSatish Balay This could be done better. 66657b952d6SSatish Balay */ 667f8abc2e8SBarry Smith rvalues = (Scalar *) PetscMalloc(3*(nreceives+1)*(nmax+1)*sizeof(Scalar));CHKPTRQ(rvalues); 668f8abc2e8SBarry Smith recv_waits = (MPI_Request *) PetscMalloc((nreceives+1)*sizeof(MPI_Request));CHKPTRQ(recv_waits); 66957b952d6SSatish Balay for ( i=0; i<nreceives; i++ ) { 670ca161407SBarry Smith ierr = MPI_Irecv(rvalues+3*nmax*i,3*nmax,MPIU_SCALAR,MPI_ANY_SOURCE,tag,comm,recv_waits+i);CHKERRQ(ierr); 67157b952d6SSatish Balay } 67257b952d6SSatish Balay 67357b952d6SSatish Balay /* do sends: 67457b952d6SSatish Balay 1) starts[i] gives the starting index in svalues for stuff going to 67557b952d6SSatish Balay the ith processor 67657b952d6SSatish Balay */ 67757b952d6SSatish Balay svalues = (Scalar *) PetscMalloc(3*(baij->stash.n+1)*sizeof(Scalar));CHKPTRQ(svalues); 678d64ed03dSBarry Smith send_waits = (MPI_Request *) PetscMalloc((nsends+1)*sizeof(MPI_Request));CHKPTRQ(send_waits); 67957b952d6SSatish Balay starts = (int *) PetscMalloc( size*sizeof(int) ); CHKPTRQ(starts); 68057b952d6SSatish Balay starts[0] = 0; 68157b952d6SSatish Balay for ( i=1; i<size; i++ ) { starts[i] = starts[i-1] + nprocs[i-1];} 68257b952d6SSatish Balay for ( i=0; i<baij->stash.n; i++ ) { 68357b952d6SSatish Balay svalues[3*starts[owner[i]]] = (Scalar) baij->stash.idx[i]; 68457b952d6SSatish Balay svalues[3*starts[owner[i]]+1] = (Scalar) baij->stash.idy[i]; 68557b952d6SSatish Balay svalues[3*(starts[owner[i]]++)+2] = baij->stash.array[i]; 68657b952d6SSatish Balay } 68757b952d6SSatish Balay PetscFree(owner); 68857b952d6SSatish Balay starts[0] = 0; 68957b952d6SSatish Balay for ( i=1; i<size; i++ ) { starts[i] = starts[i-1] + nprocs[i-1];} 69057b952d6SSatish Balay count = 0; 69157b952d6SSatish Balay for ( i=0; i<size; i++ ) { 69257b952d6SSatish Balay if (procs[i]) { 693ca161407SBarry Smith ierr = MPI_Isend(svalues+3*starts[i],3*nprocs[i],MPIU_SCALAR,i,tag,comm,send_waits+count++);CHKERRQ(ierr); 69457b952d6SSatish Balay } 69557b952d6SSatish Balay } 69657b952d6SSatish Balay PetscFree(starts); PetscFree(nprocs); 69757b952d6SSatish Balay 69857b952d6SSatish Balay /* Free cache space */ 699cd1fa5fbSBarry Smith PLogInfo(0,"[%d]MatAssemblyBegin_MPIBAIJ:Number of off-processor values %d\n",rank,baij->stash.n); 70057b952d6SSatish Balay ierr = StashDestroy_Private(&baij->stash); CHKERRQ(ierr); 70157b952d6SSatish Balay 70257b952d6SSatish Balay baij->svalues = svalues; baij->rvalues = rvalues; 70357b952d6SSatish Balay baij->nsends = nsends; baij->nrecvs = nreceives; 70457b952d6SSatish Balay baij->send_waits = send_waits; baij->recv_waits = recv_waits; 70557b952d6SSatish Balay baij->rmax = nmax; 70657b952d6SSatish Balay 7073a40ed3dSBarry Smith PetscFunctionReturn(0); 70857b952d6SSatish Balay } 709bd7f49f5SSatish Balay 710fef45726SSatish Balay /* 711fef45726SSatish Balay Creates the hash table, and sets the table 712fef45726SSatish Balay This table is created only once. 713fef45726SSatish Balay If new entried need to be added to the matrix 714fef45726SSatish Balay then the hash table has to be destroyed and 715fef45726SSatish Balay recreated. 716fef45726SSatish Balay */ 717fef45726SSatish Balay #undef __FUNC__ 718fef45726SSatish Balay #define __FUNC__ "MatCreateHashTable_MPIBAIJ_Private" 719d0a41580SSatish Balay int MatCreateHashTable_MPIBAIJ_Private(Mat mat,double factor) 720596b8d2eSBarry Smith { 721596b8d2eSBarry Smith Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *) mat->data; 722596b8d2eSBarry Smith Mat A = baij->A, B=baij->B; 723596b8d2eSBarry Smith Mat_SeqBAIJ *a=(Mat_SeqBAIJ *)A->data, *b=(Mat_SeqBAIJ *)B->data; 7240bdbc534SSatish Balay int i,j,k,nz=a->nz+b->nz,h1,*ai=a->i,*aj=a->j,*bi=b->i,*bj=b->j; 7250bdbc534SSatish Balay int size,ct=0,max1=0,max2=0,bs2=baij->bs2,rstart=baij->rstart; 7260bdbc534SSatish Balay int cstart=baij->cstart,*garray=baij->garray,row,col; 727fef45726SSatish Balay int *HT,key; 7280bdbc534SSatish Balay Scalar **HD; 729fef45726SSatish Balay 730d64ed03dSBarry Smith PetscFunctionBegin; 7310bdbc534SSatish Balay baij->ht_size=(int)(factor*nz); 7320bdbc534SSatish Balay size = baij->ht_size; 733fef45726SSatish Balay 7340bdbc534SSatish Balay if (baij->ht) { 7350bdbc534SSatish Balay PetscFunctionReturn(0); 736596b8d2eSBarry Smith } 7370bdbc534SSatish Balay 738fef45726SSatish Balay /* Allocate Memory for Hash Table */ 739fef45726SSatish Balay baij->ht = (int*)PetscMalloc(size*(sizeof(int)+sizeof(Scalar*))+1); CHKPTRQ(baij->ht); 740a07cd24cSSatish Balay HT = baij->ht; 7410bdbc534SSatish Balay HD = (Scalar**)(HT + size); 742fef45726SSatish Balay PetscMemzero(HT,size*sizeof(int)+sizeof(Scalar*)); 7430bdbc534SSatish Balay 744596b8d2eSBarry Smith 745596b8d2eSBarry Smith /* Loop Over A */ 7460bdbc534SSatish Balay for ( i=0; i<a->mbs; i++ ) { 747596b8d2eSBarry Smith for ( j=ai[i]; j<ai[i+1]; j++ ) { 7480bdbc534SSatish Balay row = i+rstart; 7490bdbc534SSatish Balay col = aj[j]+cstart; 750596b8d2eSBarry Smith 7510bdbc534SSatish Balay key = row*baij->Nbs + col + 1; 7520bdbc534SSatish Balay /* printf("[%d]row,col,key = %2d,%2d,%5.2f\n",PetscGlobalRank,row,col,key); */ 7530bdbc534SSatish Balay h1 = HASH1(size,key); 7540bdbc534SSatish Balay 7550bdbc534SSatish Balay for ( k=0; k<size; k++ ){ 7560bdbc534SSatish Balay if (HT[(h1+k)%size] == 0.0) { 7570bdbc534SSatish Balay HT[(h1+k)%size] = key; 7580bdbc534SSatish Balay HD[(h1+k)%size] = a->a + j*bs2; 759596b8d2eSBarry Smith break; 760596b8d2eSBarry Smith } else ct++; 761596b8d2eSBarry Smith } 762bd7f49f5SSatish Balay if (k> max1) max1 = k; 763596b8d2eSBarry Smith } 764596b8d2eSBarry Smith } 765596b8d2eSBarry Smith /* Loop Over B */ 7660bdbc534SSatish Balay for ( i=0; i<b->mbs; i++ ) { 767596b8d2eSBarry Smith for ( j=bi[i]; j<bi[i+1]; j++ ) { 7680bdbc534SSatish Balay row = i+rstart; 7690bdbc534SSatish Balay col = garray[bj[j]]; 7700bdbc534SSatish Balay key = row*baij->Nbs + col + 1; 7710bdbc534SSatish Balay /* printf("[%d]row,col,key = %2d,%2d,%5.2f\n",PetscGlobalRank,row,col,key); */ 772596b8d2eSBarry Smith h1 = HASH1(size,key); 7730bdbc534SSatish Balay for ( k=0; k<size; k++ ){ 7740bdbc534SSatish Balay if (HT[(h1+k)%size] == 0.0) { 7750bdbc534SSatish Balay HT[(h1+k)%size] = key; 7760bdbc534SSatish Balay HD[(h1+k)%size] = b->a + j*bs2; 777596b8d2eSBarry Smith break; 778596b8d2eSBarry Smith } else ct++; 779596b8d2eSBarry Smith } 780bd7f49f5SSatish Balay if (k> max2) max2 = k; 781596b8d2eSBarry Smith } 782596b8d2eSBarry Smith } 783596b8d2eSBarry Smith 784596b8d2eSBarry Smith /* Print Summary */ 785596b8d2eSBarry Smith for ( i=0,key=0.0,j=0; i<size; i++) 786596b8d2eSBarry Smith if (HT[i]) {j++;} 787596b8d2eSBarry Smith 7880bdbc534SSatish Balay /*printf("[%d] fact = %3.2f max1 = %5d max2 = %5d Size %5d - Searches %5d Avg %5.2f Keys %5d\n", 7890bdbc534SSatish Balay PetscGlobalRank,factor,max1,max2,size,ct+j,((float)ct+j),j); */ 7900bdbc534SSatish Balay fflush(stdout); 7913a40ed3dSBarry Smith PetscFunctionReturn(0); 792596b8d2eSBarry Smith } 79357b952d6SSatish Balay 7945615d1e5SSatish Balay #undef __FUNC__ 7955615d1e5SSatish Balay #define __FUNC__ "MatAssemblyEnd_MPIBAIJ" 796ec1ea8d8SLois Curfman McInnes int MatAssemblyEnd_MPIBAIJ(Mat mat,MatAssemblyType mode) 79757b952d6SSatish Balay { 79857b952d6SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *) mat->data; 79957b952d6SSatish Balay MPI_Status *send_status,recv_status; 80057b952d6SSatish Balay int imdex,nrecvs = baij->nrecvs, count = nrecvs, i, n, ierr; 801596b8d2eSBarry Smith int bs=baij->bs,row,col,other_disassembled,flg; 80257b952d6SSatish Balay Scalar *values,val; 803e0fa3b82SLois Curfman McInnes InsertMode addv = mat->insertmode; 80457b952d6SSatish Balay 805d64ed03dSBarry Smith PetscFunctionBegin; 80657b952d6SSatish Balay /* wait on receives */ 80757b952d6SSatish Balay while (count) { 808ca161407SBarry Smith ierr = MPI_Waitany(nrecvs,baij->recv_waits,&imdex,&recv_status);CHKERRQ(ierr); 80957b952d6SSatish Balay /* unpack receives into our local space */ 81057b952d6SSatish Balay values = baij->rvalues + 3*imdex*baij->rmax; 811ca161407SBarry Smith ierr = MPI_Get_count(&recv_status,MPIU_SCALAR,&n);CHKERRQ(ierr); 81257b952d6SSatish Balay n = n/3; 81357b952d6SSatish Balay for ( i=0; i<n; i++ ) { 81457b952d6SSatish Balay row = (int) PetscReal(values[3*i]) - baij->rstart*bs; 81557b952d6SSatish Balay col = (int) PetscReal(values[3*i+1]); 81657b952d6SSatish Balay val = values[3*i+2]; 81757b952d6SSatish Balay if (col >= baij->cstart*bs && col < baij->cend*bs) { 81857b952d6SSatish Balay col -= baij->cstart*bs; 8196fd7127cSSatish Balay ierr = MatSetValues(baij->A,1,&row,1,&col,&val,addv); CHKERRQ(ierr) 820d64ed03dSBarry Smith } else { 82157b952d6SSatish Balay if (mat->was_assembled) { 822905e6a2fSBarry Smith if (!baij->colmap) { 823905e6a2fSBarry Smith ierr = CreateColmap_MPIBAIJ_Private(mat); CHKERRQ(ierr); 824905e6a2fSBarry Smith } 825a5eb4965SSatish Balay col = (baij->colmap[col/bs]) - 1 + col%bs; 82657b952d6SSatish Balay if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) { 82757b952d6SSatish Balay ierr = DisAssemble_MPIBAIJ(mat); CHKERRQ(ierr); 82857b952d6SSatish Balay col = (int) PetscReal(values[3*i+1]); 82957b952d6SSatish Balay } 83057b952d6SSatish Balay } 8316fd7127cSSatish Balay ierr = MatSetValues(baij->B,1,&row,1,&col,&val,addv); CHKERRQ(ierr) 83257b952d6SSatish Balay } 83357b952d6SSatish Balay } 83457b952d6SSatish Balay count--; 83557b952d6SSatish Balay } 83657b952d6SSatish Balay PetscFree(baij->recv_waits); PetscFree(baij->rvalues); 83757b952d6SSatish Balay 83857b952d6SSatish Balay /* wait on sends */ 83957b952d6SSatish Balay if (baij->nsends) { 840d64ed03dSBarry Smith send_status = (MPI_Status *) PetscMalloc(baij->nsends*sizeof(MPI_Status));CHKPTRQ(send_status); 841ca161407SBarry Smith ierr = MPI_Waitall(baij->nsends,baij->send_waits,send_status);CHKERRQ(ierr); 84257b952d6SSatish Balay PetscFree(send_status); 84357b952d6SSatish Balay } 84457b952d6SSatish Balay PetscFree(baij->send_waits); PetscFree(baij->svalues); 84557b952d6SSatish Balay 84657b952d6SSatish Balay ierr = MatAssemblyBegin(baij->A,mode); CHKERRQ(ierr); 84757b952d6SSatish Balay ierr = MatAssemblyEnd(baij->A,mode); CHKERRQ(ierr); 84857b952d6SSatish Balay 84957b952d6SSatish Balay /* determine if any processor has disassembled, if so we must 85057b952d6SSatish Balay also disassemble ourselfs, in order that we may reassemble. */ 851ca161407SBarry Smith ierr = MPI_Allreduce(&mat->was_assembled,&other_disassembled,1,MPI_INT,MPI_PROD,mat->comm);CHKERRQ(ierr); 85257b952d6SSatish Balay if (mat->was_assembled && !other_disassembled) { 85357b952d6SSatish Balay ierr = DisAssemble_MPIBAIJ(mat); CHKERRQ(ierr); 85457b952d6SSatish Balay } 85557b952d6SSatish Balay 8566d4a8577SBarry Smith if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) { 85757b952d6SSatish Balay ierr = MatSetUpMultiply_MPIBAIJ(mat); CHKERRQ(ierr); 85857b952d6SSatish Balay } 85957b952d6SSatish Balay ierr = MatAssemblyBegin(baij->B,mode); CHKERRQ(ierr); 86057b952d6SSatish Balay ierr = MatAssemblyEnd(baij->B,mode); CHKERRQ(ierr); 86157b952d6SSatish Balay 862596b8d2eSBarry Smith ierr = OptionsHasName(PETSC_NULL,"-use_hash",&flg); CHKERRQ(ierr); 86344e6884eSSatish Balay if (flg && !baij->ht && mode== MAT_FINAL_ASSEMBLY) { 864a07cd24cSSatish Balay double fact = 1.39; 865fef45726SSatish Balay ierr = OptionsGetDouble(PETSC_NULL,"-use_hash",&fact,&flg); CHKERRQ(ierr); 866*a74b47caSSatish Balay if (fact <= 1.0) fact = 1.39; 867*a74b47caSSatish Balay PLogInfo(0,"[%d]MatAssemblyEnd_MPIBAIJ:Hash table Factor used %5.2f\n",PetscGlobalRank,fact); 868fef45726SSatish Balay ierr = MatCreateHashTable_MPIBAIJ_Private(mat,fact); CHKERRQ(ierr); 8690bdbc534SSatish Balay mat->ops.setvalues = MatSetValues_MPIBAIJ_HT; 8700bdbc534SSatish Balay mat->ops.setvaluesblocked = MatSetValuesBlocked_MPIBAIJ_HT; 871bd7f49f5SSatish Balay } 87257b952d6SSatish Balay if (baij->rowvalues) {PetscFree(baij->rowvalues); baij->rowvalues = 0;} 8733a40ed3dSBarry Smith PetscFunctionReturn(0); 87457b952d6SSatish Balay } 87557b952d6SSatish Balay 8765615d1e5SSatish Balay #undef __FUNC__ 8775615d1e5SSatish Balay #define __FUNC__ "MatView_MPIBAIJ_Binary" 87857b952d6SSatish Balay static int MatView_MPIBAIJ_Binary(Mat mat,Viewer viewer) 87957b952d6SSatish Balay { 88057b952d6SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *) mat->data; 88157b952d6SSatish Balay int ierr; 88257b952d6SSatish Balay 883d64ed03dSBarry Smith PetscFunctionBegin; 88457b952d6SSatish Balay if (baij->size == 1) { 88557b952d6SSatish Balay ierr = MatView(baij->A,viewer); CHKERRQ(ierr); 886a8c6a408SBarry Smith } else SETERRQ(PETSC_ERR_SUP,0,"Only uniprocessor output supported"); 8873a40ed3dSBarry Smith PetscFunctionReturn(0); 88857b952d6SSatish Balay } 88957b952d6SSatish Balay 8905615d1e5SSatish Balay #undef __FUNC__ 8915615d1e5SSatish Balay #define __FUNC__ "MatView_MPIBAIJ_ASCIIorDraworMatlab" 89257b952d6SSatish Balay static int MatView_MPIBAIJ_ASCIIorDraworMatlab(Mat mat,Viewer viewer) 89357b952d6SSatish Balay { 89457b952d6SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *) mat->data; 895cee3aa6bSSatish Balay int ierr, format,rank,bs = baij->bs; 89657b952d6SSatish Balay FILE *fd; 89757b952d6SSatish Balay ViewerType vtype; 89857b952d6SSatish Balay 899d64ed03dSBarry Smith PetscFunctionBegin; 90057b952d6SSatish Balay ierr = ViewerGetType(viewer,&vtype); CHKERRQ(ierr); 90157b952d6SSatish Balay if (vtype == ASCII_FILES_VIEWER || vtype == ASCII_FILE_VIEWER) { 90257b952d6SSatish Balay ierr = ViewerGetFormat(viewer,&format); 903639f9d9dSBarry Smith if (format == VIEWER_FORMAT_ASCII_INFO_LONG) { 9044e220ebcSLois Curfman McInnes MatInfo info; 90557b952d6SSatish Balay MPI_Comm_rank(mat->comm,&rank); 90657b952d6SSatish Balay ierr = ViewerASCIIGetPointer(viewer,&fd); CHKERRQ(ierr); 9074e220ebcSLois Curfman McInnes ierr = MatGetInfo(mat,MAT_LOCAL,&info); 90857b952d6SSatish Balay PetscSequentialPhaseBegin(mat->comm,1); 90957b952d6SSatish Balay fprintf(fd,"[%d] Local rows %d nz %d nz alloced %d bs %d mem %d\n", 9104e220ebcSLois Curfman McInnes rank,baij->m,(int)info.nz_used*bs,(int)info.nz_allocated*bs, 9114e220ebcSLois Curfman McInnes baij->bs,(int)info.memory); 9124e220ebcSLois Curfman McInnes ierr = MatGetInfo(baij->A,MAT_LOCAL,&info); 9134e220ebcSLois Curfman McInnes fprintf(fd,"[%d] on-diagonal part: nz %d \n",rank,(int)info.nz_used*bs); 9144e220ebcSLois Curfman McInnes ierr = MatGetInfo(baij->B,MAT_LOCAL,&info); 9154e220ebcSLois Curfman McInnes fprintf(fd,"[%d] off-diagonal part: nz %d \n",rank,(int)info.nz_used*bs); 91657b952d6SSatish Balay fflush(fd); 91757b952d6SSatish Balay PetscSequentialPhaseEnd(mat->comm,1); 91857b952d6SSatish Balay ierr = VecScatterView(baij->Mvctx,viewer); CHKERRQ(ierr); 9193a40ed3dSBarry Smith PetscFunctionReturn(0); 920d64ed03dSBarry Smith } else if (format == VIEWER_FORMAT_ASCII_INFO) { 921bcc3fcf6SBarry Smith PetscPrintf(mat->comm," block size is %d\n",bs); 9223a40ed3dSBarry Smith PetscFunctionReturn(0); 92357b952d6SSatish Balay } 92457b952d6SSatish Balay } 92557b952d6SSatish Balay 92657b952d6SSatish Balay if (vtype == DRAW_VIEWER) { 92757b952d6SSatish Balay Draw draw; 92857b952d6SSatish Balay PetscTruth isnull; 92957b952d6SSatish Balay ierr = ViewerDrawGetDraw(viewer,&draw); CHKERRQ(ierr); 9303a40ed3dSBarry Smith ierr = DrawIsNull(draw,&isnull); CHKERRQ(ierr); if (isnull) PetscFunctionReturn(0); 93157b952d6SSatish Balay } 93257b952d6SSatish Balay 93357b952d6SSatish Balay if (vtype == ASCII_FILE_VIEWER) { 93457b952d6SSatish Balay ierr = ViewerASCIIGetPointer(viewer,&fd); CHKERRQ(ierr); 93557b952d6SSatish Balay PetscSequentialPhaseBegin(mat->comm,1); 93657b952d6SSatish Balay fprintf(fd,"[%d] rows %d starts %d ends %d cols %d starts %d ends %d\n", 93757b952d6SSatish Balay baij->rank,baij->m,baij->rstart*bs,baij->rend*bs,baij->n, 93857b952d6SSatish Balay baij->cstart*bs,baij->cend*bs); 93957b952d6SSatish Balay ierr = MatView(baij->A,viewer); CHKERRQ(ierr); 94057b952d6SSatish Balay ierr = MatView(baij->B,viewer); CHKERRQ(ierr); 94157b952d6SSatish Balay fflush(fd); 94257b952d6SSatish Balay PetscSequentialPhaseEnd(mat->comm,1); 943d64ed03dSBarry Smith } else { 94457b952d6SSatish Balay int size = baij->size; 94557b952d6SSatish Balay rank = baij->rank; 94657b952d6SSatish Balay if (size == 1) { 94757b952d6SSatish Balay ierr = MatView(baij->A,viewer); CHKERRQ(ierr); 948d64ed03dSBarry Smith } else { 94957b952d6SSatish Balay /* assemble the entire matrix onto first processor. */ 95057b952d6SSatish Balay Mat A; 95157b952d6SSatish Balay Mat_SeqBAIJ *Aloc; 95257b952d6SSatish Balay int M = baij->M, N = baij->N,*ai,*aj,row,col,i,j,k,*rvals; 95357b952d6SSatish Balay int mbs=baij->mbs; 95457b952d6SSatish Balay Scalar *a; 95557b952d6SSatish Balay 95657b952d6SSatish Balay if (!rank) { 95755843e3eSBarry Smith ierr = MatCreateMPIBAIJ(mat->comm,baij->bs,M,N,M,N,0,PETSC_NULL,0,PETSC_NULL,&A);CHKERRQ(ierr); 958d64ed03dSBarry Smith } else { 95955843e3eSBarry Smith ierr = MatCreateMPIBAIJ(mat->comm,baij->bs,0,0,M,N,0,PETSC_NULL,0,PETSC_NULL,&A);CHKERRQ(ierr); 96057b952d6SSatish Balay } 96157b952d6SSatish Balay PLogObjectParent(mat,A); 96257b952d6SSatish Balay 96357b952d6SSatish Balay /* copy over the A part */ 96457b952d6SSatish Balay Aloc = (Mat_SeqBAIJ*) baij->A->data; 96557b952d6SSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 96657b952d6SSatish Balay row = baij->rstart; 96757b952d6SSatish Balay rvals = (int *) PetscMalloc(bs*sizeof(int)); CHKPTRQ(rvals); 96857b952d6SSatish Balay 96957b952d6SSatish Balay for ( i=0; i<mbs; i++ ) { 97057b952d6SSatish Balay rvals[0] = bs*(baij->rstart + i); 97157b952d6SSatish Balay for ( j=1; j<bs; j++ ) { rvals[j] = rvals[j-1] + 1; } 97257b952d6SSatish Balay for ( j=ai[i]; j<ai[i+1]; j++ ) { 97357b952d6SSatish Balay col = (baij->cstart+aj[j])*bs; 97457b952d6SSatish Balay for (k=0; k<bs; k++ ) { 975cee3aa6bSSatish Balay ierr = MatSetValues(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 976cee3aa6bSSatish Balay col++; a += bs; 97757b952d6SSatish Balay } 97857b952d6SSatish Balay } 97957b952d6SSatish Balay } 98057b952d6SSatish Balay /* copy over the B part */ 98157b952d6SSatish Balay Aloc = (Mat_SeqBAIJ*) baij->B->data; 98257b952d6SSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 98357b952d6SSatish Balay row = baij->rstart*bs; 98457b952d6SSatish Balay for ( i=0; i<mbs; i++ ) { 98557b952d6SSatish Balay rvals[0] = bs*(baij->rstart + i); 98657b952d6SSatish Balay for ( j=1; j<bs; j++ ) { rvals[j] = rvals[j-1] + 1; } 98757b952d6SSatish Balay for ( j=ai[i]; j<ai[i+1]; j++ ) { 98857b952d6SSatish Balay col = baij->garray[aj[j]]*bs; 98957b952d6SSatish Balay for (k=0; k<bs; k++ ) { 990cee3aa6bSSatish Balay ierr = MatSetValues(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 991cee3aa6bSSatish Balay col++; a += bs; 99257b952d6SSatish Balay } 99357b952d6SSatish Balay } 99457b952d6SSatish Balay } 99557b952d6SSatish Balay PetscFree(rvals); 9966d4a8577SBarry Smith ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY); CHKERRQ(ierr); 9976d4a8577SBarry Smith ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY); CHKERRQ(ierr); 99855843e3eSBarry Smith /* 99955843e3eSBarry Smith Everyone has to call to draw the matrix since the graphics waits are 100055843e3eSBarry Smith synchronized across all processors that share the Draw object 100155843e3eSBarry Smith */ 100255843e3eSBarry Smith if (!rank || vtype == DRAW_VIEWER) { 100357b952d6SSatish Balay ierr = MatView(((Mat_MPIBAIJ*)(A->data))->A,viewer); CHKERRQ(ierr); 100457b952d6SSatish Balay } 100557b952d6SSatish Balay ierr = MatDestroy(A); CHKERRQ(ierr); 100657b952d6SSatish Balay } 100757b952d6SSatish Balay } 10083a40ed3dSBarry Smith PetscFunctionReturn(0); 100957b952d6SSatish Balay } 101057b952d6SSatish Balay 101157b952d6SSatish Balay 101257b952d6SSatish Balay 10135615d1e5SSatish Balay #undef __FUNC__ 10145615d1e5SSatish Balay #define __FUNC__ "MatView_MPIBAIJ" 1015ec1ea8d8SLois Curfman McInnes int MatView_MPIBAIJ(PetscObject obj,Viewer viewer) 101657b952d6SSatish Balay { 101757b952d6SSatish Balay Mat mat = (Mat) obj; 101857b952d6SSatish Balay int ierr; 101957b952d6SSatish Balay ViewerType vtype; 102057b952d6SSatish Balay 1021d64ed03dSBarry Smith PetscFunctionBegin; 102257b952d6SSatish Balay ierr = ViewerGetType(viewer,&vtype); CHKERRQ(ierr); 102357b952d6SSatish Balay if (vtype == ASCII_FILE_VIEWER || vtype == ASCII_FILES_VIEWER || 102457b952d6SSatish Balay vtype == DRAW_VIEWER || vtype == MATLAB_VIEWER) { 102557b952d6SSatish Balay ierr = MatView_MPIBAIJ_ASCIIorDraworMatlab(mat,viewer); CHKERRQ(ierr); 10263a40ed3dSBarry Smith } else if (vtype == BINARY_FILE_VIEWER) { 10273a40ed3dSBarry Smith ierr = MatView_MPIBAIJ_Binary(mat,viewer);CHKERRQ(ierr); 102857b952d6SSatish Balay } 10293a40ed3dSBarry Smith PetscFunctionReturn(0); 103057b952d6SSatish Balay } 103157b952d6SSatish Balay 10325615d1e5SSatish Balay #undef __FUNC__ 10335615d1e5SSatish Balay #define __FUNC__ "MatDestroy_MPIBAIJ" 1034ec1ea8d8SLois Curfman McInnes int MatDestroy_MPIBAIJ(PetscObject obj) 103579bdfe76SSatish Balay { 103679bdfe76SSatish Balay Mat mat = (Mat) obj; 103779bdfe76SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *) mat->data; 103879bdfe76SSatish Balay int ierr; 103979bdfe76SSatish Balay 1040d64ed03dSBarry Smith PetscFunctionBegin; 10413a40ed3dSBarry Smith #if defined(USE_PETSC_LOG) 104279bdfe76SSatish Balay PLogObjectState(obj,"Rows=%d, Cols=%d",baij->M,baij->N); 104379bdfe76SSatish Balay #endif 104479bdfe76SSatish Balay 104583e2fdc7SBarry Smith ierr = StashDestroy_Private(&baij->stash); CHKERRQ(ierr); 104679bdfe76SSatish Balay PetscFree(baij->rowners); 104779bdfe76SSatish Balay ierr = MatDestroy(baij->A); CHKERRQ(ierr); 104879bdfe76SSatish Balay ierr = MatDestroy(baij->B); CHKERRQ(ierr); 104979bdfe76SSatish Balay if (baij->colmap) PetscFree(baij->colmap); 105079bdfe76SSatish Balay if (baij->garray) PetscFree(baij->garray); 105179bdfe76SSatish Balay if (baij->lvec) VecDestroy(baij->lvec); 105279bdfe76SSatish Balay if (baij->Mvctx) VecScatterDestroy(baij->Mvctx); 105379bdfe76SSatish Balay if (baij->rowvalues) PetscFree(baij->rowvalues); 105430793edcSSatish Balay if (baij->barray) PetscFree(baij->barray); 10550bdbc534SSatish Balay if (baij->ht) PetscFree(baij->ht); 105679bdfe76SSatish Balay PetscFree(baij); 105779bdfe76SSatish Balay PLogObjectDestroy(mat); 105879bdfe76SSatish Balay PetscHeaderDestroy(mat); 10593a40ed3dSBarry Smith PetscFunctionReturn(0); 106079bdfe76SSatish Balay } 106179bdfe76SSatish Balay 10625615d1e5SSatish Balay #undef __FUNC__ 10635615d1e5SSatish Balay #define __FUNC__ "MatMult_MPIBAIJ" 1064ec1ea8d8SLois Curfman McInnes int MatMult_MPIBAIJ(Mat A,Vec xx,Vec yy) 1065cee3aa6bSSatish Balay { 1066cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ *) A->data; 106747b4a8eaSLois Curfman McInnes int ierr, nt; 1068cee3aa6bSSatish Balay 1069d64ed03dSBarry Smith PetscFunctionBegin; 1070c16cb8f2SBarry Smith VecGetLocalSize_Fast(xx,nt); 107147b4a8eaSLois Curfman McInnes if (nt != a->n) { 1072a8c6a408SBarry Smith SETERRQ(PETSC_ERR_ARG_SIZ,0,"Incompatible partition of A and xx"); 107347b4a8eaSLois Curfman McInnes } 1074c16cb8f2SBarry Smith VecGetLocalSize_Fast(yy,nt); 107547b4a8eaSLois Curfman McInnes if (nt != a->m) { 1076a8c6a408SBarry Smith SETERRQ(PETSC_ERR_ARG_SIZ,0,"Incompatible parition of A and yy"); 107747b4a8eaSLois Curfman McInnes } 107843a90d84SBarry Smith ierr = VecScatterBegin(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr); 1079cee3aa6bSSatish Balay ierr = (*a->A->ops.mult)(a->A,xx,yy); CHKERRQ(ierr); 108043a90d84SBarry Smith ierr = VecScatterEnd(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr); 1081cee3aa6bSSatish Balay ierr = (*a->B->ops.multadd)(a->B,a->lvec,yy,yy); CHKERRQ(ierr); 108243a90d84SBarry Smith ierr = VecScatterPostRecvs(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr); 10833a40ed3dSBarry Smith PetscFunctionReturn(0); 1084cee3aa6bSSatish Balay } 1085cee3aa6bSSatish Balay 10865615d1e5SSatish Balay #undef __FUNC__ 10875615d1e5SSatish Balay #define __FUNC__ "MatMultAdd_MPIBAIJ" 1088ec1ea8d8SLois Curfman McInnes int MatMultAdd_MPIBAIJ(Mat A,Vec xx,Vec yy,Vec zz) 1089cee3aa6bSSatish Balay { 1090cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ *) A->data; 1091cee3aa6bSSatish Balay int ierr; 1092d64ed03dSBarry Smith 1093d64ed03dSBarry Smith PetscFunctionBegin; 109443a90d84SBarry Smith ierr = VecScatterBegin(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr); 1095cee3aa6bSSatish Balay ierr = (*a->A->ops.multadd)(a->A,xx,yy,zz); CHKERRQ(ierr); 109643a90d84SBarry Smith ierr = VecScatterEnd(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr); 1097cee3aa6bSSatish Balay ierr = (*a->B->ops.multadd)(a->B,a->lvec,zz,zz); CHKERRQ(ierr); 10983a40ed3dSBarry Smith PetscFunctionReturn(0); 1099cee3aa6bSSatish Balay } 1100cee3aa6bSSatish Balay 11015615d1e5SSatish Balay #undef __FUNC__ 11025615d1e5SSatish Balay #define __FUNC__ "MatMultTrans_MPIBAIJ" 1103ec1ea8d8SLois Curfman McInnes int MatMultTrans_MPIBAIJ(Mat A,Vec xx,Vec yy) 1104cee3aa6bSSatish Balay { 1105cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ *) A->data; 1106cee3aa6bSSatish Balay int ierr; 1107cee3aa6bSSatish Balay 1108d64ed03dSBarry Smith PetscFunctionBegin; 1109cee3aa6bSSatish Balay /* do nondiagonal part */ 1110cee3aa6bSSatish Balay ierr = (*a->B->ops.multtrans)(a->B,xx,a->lvec); CHKERRQ(ierr); 1111cee3aa6bSSatish Balay /* send it on its way */ 1112537820f0SBarry Smith ierr = VecScatterBegin(a->lvec,yy,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr); 1113cee3aa6bSSatish Balay /* do local part */ 1114cee3aa6bSSatish Balay ierr = (*a->A->ops.multtrans)(a->A,xx,yy); CHKERRQ(ierr); 1115cee3aa6bSSatish Balay /* receive remote parts: note this assumes the values are not actually */ 1116cee3aa6bSSatish Balay /* inserted in yy until the next line, which is true for my implementation*/ 1117cee3aa6bSSatish Balay /* but is not perhaps always true. */ 1118639f9d9dSBarry Smith ierr = VecScatterEnd(a->lvec,yy,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr); 11193a40ed3dSBarry Smith PetscFunctionReturn(0); 1120cee3aa6bSSatish Balay } 1121cee3aa6bSSatish Balay 11225615d1e5SSatish Balay #undef __FUNC__ 11235615d1e5SSatish Balay #define __FUNC__ "MatMultTransAdd_MPIBAIJ" 1124ec1ea8d8SLois Curfman McInnes int MatMultTransAdd_MPIBAIJ(Mat A,Vec xx,Vec yy,Vec zz) 1125cee3aa6bSSatish Balay { 1126cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ *) A->data; 1127cee3aa6bSSatish Balay int ierr; 1128cee3aa6bSSatish Balay 1129d64ed03dSBarry Smith PetscFunctionBegin; 1130cee3aa6bSSatish Balay /* do nondiagonal part */ 1131cee3aa6bSSatish Balay ierr = (*a->B->ops.multtrans)(a->B,xx,a->lvec); CHKERRQ(ierr); 1132cee3aa6bSSatish Balay /* send it on its way */ 1133537820f0SBarry Smith ierr = VecScatterBegin(a->lvec,zz,ADD_VALUES,SCATTER_REVERSE,a->Mvctx); CHKERRQ(ierr); 1134cee3aa6bSSatish Balay /* do local part */ 1135cee3aa6bSSatish Balay ierr = (*a->A->ops.multtransadd)(a->A,xx,yy,zz); CHKERRQ(ierr); 1136cee3aa6bSSatish Balay /* receive remote parts: note this assumes the values are not actually */ 1137cee3aa6bSSatish Balay /* inserted in yy until the next line, which is true for my implementation*/ 1138cee3aa6bSSatish Balay /* but is not perhaps always true. */ 1139537820f0SBarry Smith ierr = VecScatterEnd(a->lvec,zz,ADD_VALUES,SCATTER_REVERSE,a->Mvctx); CHKERRQ(ierr); 11403a40ed3dSBarry Smith PetscFunctionReturn(0); 1141cee3aa6bSSatish Balay } 1142cee3aa6bSSatish Balay 1143cee3aa6bSSatish Balay /* 1144cee3aa6bSSatish Balay This only works correctly for square matrices where the subblock A->A is the 1145cee3aa6bSSatish Balay diagonal block 1146cee3aa6bSSatish Balay */ 11475615d1e5SSatish Balay #undef __FUNC__ 11485615d1e5SSatish Balay #define __FUNC__ "MatGetDiagonal_MPIBAIJ" 1149ec1ea8d8SLois Curfman McInnes int MatGetDiagonal_MPIBAIJ(Mat A,Vec v) 1150cee3aa6bSSatish Balay { 1151cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ *) A->data; 11523a40ed3dSBarry Smith int ierr; 1153d64ed03dSBarry Smith 1154d64ed03dSBarry Smith PetscFunctionBegin; 1155a8c6a408SBarry Smith if (a->M != a->N) SETERRQ(PETSC_ERR_SUP,0,"Supports only square matrix where A->A is diag block"); 11563a40ed3dSBarry Smith ierr = MatGetDiagonal(a->A,v);CHKERRQ(ierr); 11573a40ed3dSBarry Smith PetscFunctionReturn(0); 1158cee3aa6bSSatish Balay } 1159cee3aa6bSSatish Balay 11605615d1e5SSatish Balay #undef __FUNC__ 11615615d1e5SSatish Balay #define __FUNC__ "MatScale_MPIBAIJ" 1162ec1ea8d8SLois Curfman McInnes int MatScale_MPIBAIJ(Scalar *aa,Mat A) 1163cee3aa6bSSatish Balay { 1164cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ *) A->data; 1165cee3aa6bSSatish Balay int ierr; 1166d64ed03dSBarry Smith 1167d64ed03dSBarry Smith PetscFunctionBegin; 1168cee3aa6bSSatish Balay ierr = MatScale(aa,a->A); CHKERRQ(ierr); 1169cee3aa6bSSatish Balay ierr = MatScale(aa,a->B); CHKERRQ(ierr); 11703a40ed3dSBarry Smith PetscFunctionReturn(0); 1171cee3aa6bSSatish Balay } 1172026e39d0SSatish Balay 11735615d1e5SSatish Balay #undef __FUNC__ 11745615d1e5SSatish Balay #define __FUNC__ "MatGetSize_MPIBAIJ" 1175ec1ea8d8SLois Curfman McInnes int MatGetSize_MPIBAIJ(Mat matin,int *m,int *n) 117657b952d6SSatish Balay { 117757b952d6SSatish Balay Mat_MPIBAIJ *mat = (Mat_MPIBAIJ *) matin->data; 1178d64ed03dSBarry Smith 1179d64ed03dSBarry Smith PetscFunctionBegin; 1180bd7f49f5SSatish Balay if (m) *m = mat->M; 1181bd7f49f5SSatish Balay if (n) *n = mat->N; 11823a40ed3dSBarry Smith PetscFunctionReturn(0); 118357b952d6SSatish Balay } 118457b952d6SSatish Balay 11855615d1e5SSatish Balay #undef __FUNC__ 11865615d1e5SSatish Balay #define __FUNC__ "MatGetLocalSize_MPIBAIJ" 1187ec1ea8d8SLois Curfman McInnes int MatGetLocalSize_MPIBAIJ(Mat matin,int *m,int *n) 118857b952d6SSatish Balay { 118957b952d6SSatish Balay Mat_MPIBAIJ *mat = (Mat_MPIBAIJ *) matin->data; 1190d64ed03dSBarry Smith 1191d64ed03dSBarry Smith PetscFunctionBegin; 119257b952d6SSatish Balay *m = mat->m; *n = mat->N; 11933a40ed3dSBarry Smith PetscFunctionReturn(0); 119457b952d6SSatish Balay } 119557b952d6SSatish Balay 11965615d1e5SSatish Balay #undef __FUNC__ 11975615d1e5SSatish Balay #define __FUNC__ "MatGetOwnershipRange_MPIBAIJ" 1198ec1ea8d8SLois Curfman McInnes int MatGetOwnershipRange_MPIBAIJ(Mat matin,int *m,int *n) 119957b952d6SSatish Balay { 120057b952d6SSatish Balay Mat_MPIBAIJ *mat = (Mat_MPIBAIJ *) matin->data; 1201d64ed03dSBarry Smith 1202d64ed03dSBarry Smith PetscFunctionBegin; 120357b952d6SSatish Balay *m = mat->rstart*mat->bs; *n = mat->rend*mat->bs; 12043a40ed3dSBarry Smith PetscFunctionReturn(0); 120557b952d6SSatish Balay } 120657b952d6SSatish Balay 1207acdf5bf4SSatish Balay extern int MatGetRow_SeqBAIJ(Mat,int,int*,int**,Scalar**); 1208acdf5bf4SSatish Balay extern int MatRestoreRow_SeqBAIJ(Mat,int,int*,int**,Scalar**); 1209acdf5bf4SSatish Balay 12105615d1e5SSatish Balay #undef __FUNC__ 12115615d1e5SSatish Balay #define __FUNC__ "MatGetRow_MPIBAIJ" 1212acdf5bf4SSatish Balay int MatGetRow_MPIBAIJ(Mat matin,int row,int *nz,int **idx,Scalar **v) 1213acdf5bf4SSatish Balay { 1214acdf5bf4SSatish Balay Mat_MPIBAIJ *mat = (Mat_MPIBAIJ *) matin->data; 1215acdf5bf4SSatish Balay Scalar *vworkA, *vworkB, **pvA, **pvB,*v_p; 1216acdf5bf4SSatish Balay int bs = mat->bs, bs2 = mat->bs2, i, ierr, *cworkA, *cworkB, **pcA, **pcB; 1217d9d09a02SSatish Balay int nztot, nzA, nzB, lrow, brstart = mat->rstart*bs, brend = mat->rend*bs; 1218d9d09a02SSatish Balay int *cmap, *idx_p,cstart = mat->cstart; 1219acdf5bf4SSatish Balay 1220d64ed03dSBarry Smith PetscFunctionBegin; 1221a8c6a408SBarry Smith if (mat->getrowactive == PETSC_TRUE) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,0,"Already active"); 1222acdf5bf4SSatish Balay mat->getrowactive = PETSC_TRUE; 1223acdf5bf4SSatish Balay 1224acdf5bf4SSatish Balay if (!mat->rowvalues && (idx || v)) { 1225acdf5bf4SSatish Balay /* 1226acdf5bf4SSatish Balay allocate enough space to hold information from the longest row. 1227acdf5bf4SSatish Balay */ 1228acdf5bf4SSatish Balay Mat_SeqBAIJ *Aa = (Mat_SeqBAIJ *) mat->A->data,*Ba = (Mat_SeqBAIJ *) mat->B->data; 1229bd16c2feSSatish Balay int max = 1,mbs = mat->mbs,tmp; 1230bd16c2feSSatish Balay for ( i=0; i<mbs; i++ ) { 1231acdf5bf4SSatish Balay tmp = Aa->i[i+1] - Aa->i[i] + Ba->i[i+1] - Ba->i[i]; 1232acdf5bf4SSatish Balay if (max < tmp) { max = tmp; } 1233acdf5bf4SSatish Balay } 1234acdf5bf4SSatish Balay mat->rowvalues = (Scalar *) PetscMalloc( max*bs2*(sizeof(int)+sizeof(Scalar))); 1235acdf5bf4SSatish Balay CHKPTRQ(mat->rowvalues); 1236acdf5bf4SSatish Balay mat->rowindices = (int *) (mat->rowvalues + max*bs2); 1237acdf5bf4SSatish Balay } 1238acdf5bf4SSatish Balay 1239a8c6a408SBarry Smith if (row < brstart || row >= brend) SETERRQ(PETSC_ERR_SUP,0,"Only local rows") 1240d9d09a02SSatish Balay lrow = row - brstart; 1241acdf5bf4SSatish Balay 1242acdf5bf4SSatish Balay pvA = &vworkA; pcA = &cworkA; pvB = &vworkB; pcB = &cworkB; 1243acdf5bf4SSatish Balay if (!v) {pvA = 0; pvB = 0;} 1244acdf5bf4SSatish Balay if (!idx) {pcA = 0; if (!v) pcB = 0;} 1245acdf5bf4SSatish Balay ierr = (*mat->A->ops.getrow)(mat->A,lrow,&nzA,pcA,pvA); CHKERRQ(ierr); 1246acdf5bf4SSatish Balay ierr = (*mat->B->ops.getrow)(mat->B,lrow,&nzB,pcB,pvB); CHKERRQ(ierr); 1247acdf5bf4SSatish Balay nztot = nzA + nzB; 1248acdf5bf4SSatish Balay 1249acdf5bf4SSatish Balay cmap = mat->garray; 1250acdf5bf4SSatish Balay if (v || idx) { 1251acdf5bf4SSatish Balay if (nztot) { 1252acdf5bf4SSatish Balay /* Sort by increasing column numbers, assuming A and B already sorted */ 1253acdf5bf4SSatish Balay int imark = -1; 1254acdf5bf4SSatish Balay if (v) { 1255acdf5bf4SSatish Balay *v = v_p = mat->rowvalues; 1256acdf5bf4SSatish Balay for ( i=0; i<nzB; i++ ) { 1257d9d09a02SSatish Balay if (cmap[cworkB[i]/bs] < cstart) v_p[i] = vworkB[i]; 1258acdf5bf4SSatish Balay else break; 1259acdf5bf4SSatish Balay } 1260acdf5bf4SSatish Balay imark = i; 1261acdf5bf4SSatish Balay for ( i=0; i<nzA; i++ ) v_p[imark+i] = vworkA[i]; 1262acdf5bf4SSatish Balay for ( i=imark; i<nzB; i++ ) v_p[nzA+i] = vworkB[i]; 1263acdf5bf4SSatish Balay } 1264acdf5bf4SSatish Balay if (idx) { 1265acdf5bf4SSatish Balay *idx = idx_p = mat->rowindices; 1266acdf5bf4SSatish Balay if (imark > -1) { 1267acdf5bf4SSatish Balay for ( i=0; i<imark; i++ ) { 1268bd16c2feSSatish Balay idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs; 1269acdf5bf4SSatish Balay } 1270acdf5bf4SSatish Balay } else { 1271acdf5bf4SSatish Balay for ( i=0; i<nzB; i++ ) { 1272d9d09a02SSatish Balay if (cmap[cworkB[i]/bs] < cstart) 1273d9d09a02SSatish Balay idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ; 1274acdf5bf4SSatish Balay else break; 1275acdf5bf4SSatish Balay } 1276acdf5bf4SSatish Balay imark = i; 1277acdf5bf4SSatish Balay } 1278d9d09a02SSatish Balay for ( i=0; i<nzA; i++ ) idx_p[imark+i] = cstart*bs + cworkA[i]; 1279d9d09a02SSatish Balay for ( i=imark; i<nzB; i++ ) idx_p[nzA+i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ; 1280acdf5bf4SSatish Balay } 1281d64ed03dSBarry Smith } else { 1282d212a18eSSatish Balay if (idx) *idx = 0; 1283d212a18eSSatish Balay if (v) *v = 0; 1284d212a18eSSatish Balay } 1285acdf5bf4SSatish Balay } 1286acdf5bf4SSatish Balay *nz = nztot; 1287acdf5bf4SSatish Balay ierr = (*mat->A->ops.restorerow)(mat->A,lrow,&nzA,pcA,pvA); CHKERRQ(ierr); 1288acdf5bf4SSatish Balay ierr = (*mat->B->ops.restorerow)(mat->B,lrow,&nzB,pcB,pvB); CHKERRQ(ierr); 12893a40ed3dSBarry Smith PetscFunctionReturn(0); 1290acdf5bf4SSatish Balay } 1291acdf5bf4SSatish Balay 12925615d1e5SSatish Balay #undef __FUNC__ 12935615d1e5SSatish Balay #define __FUNC__ "MatRestoreRow_MPIBAIJ" 1294acdf5bf4SSatish Balay int MatRestoreRow_MPIBAIJ(Mat mat,int row,int *nz,int **idx,Scalar **v) 1295acdf5bf4SSatish Balay { 1296acdf5bf4SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *) mat->data; 1297d64ed03dSBarry Smith 1298d64ed03dSBarry Smith PetscFunctionBegin; 1299acdf5bf4SSatish Balay if (baij->getrowactive == PETSC_FALSE) { 1300a8c6a408SBarry Smith SETERRQ(PETSC_ERR_ARG_WRONGSTATE,0,"MatGetRow not called"); 1301acdf5bf4SSatish Balay } 1302acdf5bf4SSatish Balay baij->getrowactive = PETSC_FALSE; 13033a40ed3dSBarry Smith PetscFunctionReturn(0); 1304acdf5bf4SSatish Balay } 1305acdf5bf4SSatish Balay 13065615d1e5SSatish Balay #undef __FUNC__ 13075615d1e5SSatish Balay #define __FUNC__ "MatGetBlockSize_MPIBAIJ" 1308ec1ea8d8SLois Curfman McInnes int MatGetBlockSize_MPIBAIJ(Mat mat,int *bs) 13095a838052SSatish Balay { 13105a838052SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *) mat->data; 1311d64ed03dSBarry Smith 1312d64ed03dSBarry Smith PetscFunctionBegin; 13135a838052SSatish Balay *bs = baij->bs; 13143a40ed3dSBarry Smith PetscFunctionReturn(0); 13155a838052SSatish Balay } 13165a838052SSatish Balay 13175615d1e5SSatish Balay #undef __FUNC__ 13185615d1e5SSatish Balay #define __FUNC__ "MatZeroEntries_MPIBAIJ" 1319ec1ea8d8SLois Curfman McInnes int MatZeroEntries_MPIBAIJ(Mat A) 132058667388SSatish Balay { 132158667388SSatish Balay Mat_MPIBAIJ *l = (Mat_MPIBAIJ *) A->data; 132258667388SSatish Balay int ierr; 1323d64ed03dSBarry Smith 1324d64ed03dSBarry Smith PetscFunctionBegin; 132558667388SSatish Balay ierr = MatZeroEntries(l->A); CHKERRQ(ierr); 132658667388SSatish Balay ierr = MatZeroEntries(l->B); CHKERRQ(ierr); 13273a40ed3dSBarry Smith PetscFunctionReturn(0); 132858667388SSatish Balay } 13290ac07820SSatish Balay 13305615d1e5SSatish Balay #undef __FUNC__ 13315615d1e5SSatish Balay #define __FUNC__ "MatGetInfo_MPIBAIJ" 1332ec1ea8d8SLois Curfman McInnes int MatGetInfo_MPIBAIJ(Mat matin,MatInfoType flag,MatInfo *info) 13330ac07820SSatish Balay { 13344e220ebcSLois Curfman McInnes Mat_MPIBAIJ *a = (Mat_MPIBAIJ *) matin->data; 13354e220ebcSLois Curfman McInnes Mat A = a->A, B = a->B; 13367d57db60SLois Curfman McInnes int ierr; 13377d57db60SLois Curfman McInnes double isend[5], irecv[5]; 13380ac07820SSatish Balay 1339d64ed03dSBarry Smith PetscFunctionBegin; 13404e220ebcSLois Curfman McInnes info->block_size = (double)a->bs; 13414e220ebcSLois Curfman McInnes ierr = MatGetInfo(A,MAT_LOCAL,info); CHKERRQ(ierr); 13424e220ebcSLois Curfman McInnes isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->memory; 13434e220ebcSLois Curfman McInnes ierr = MatGetInfo(B,MAT_LOCAL,info); CHKERRQ(ierr); 13444e220ebcSLois Curfman McInnes isend[0] += info->nz_used; isend[1] += info->nz_allocated; isend[2] += info->memory; 13450ac07820SSatish Balay if (flag == MAT_LOCAL) { 13464e220ebcSLois Curfman McInnes info->nz_used = isend[0]; 13474e220ebcSLois Curfman McInnes info->nz_allocated = isend[1]; 13484e220ebcSLois Curfman McInnes info->nz_unneeded = isend[2]; 13494e220ebcSLois Curfman McInnes info->memory = isend[3]; 13504e220ebcSLois Curfman McInnes info->mallocs = isend[4]; 13510ac07820SSatish Balay } else if (flag == MAT_GLOBAL_MAX) { 1352ca161407SBarry Smith ierr = MPI_Allreduce(isend,irecv,5,MPI_INT,MPI_MAX,matin->comm);CHKERRQ(ierr); 13534e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 13544e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 13554e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 13564e220ebcSLois Curfman McInnes info->memory = irecv[3]; 13574e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 13580ac07820SSatish Balay } else if (flag == MAT_GLOBAL_SUM) { 1359ca161407SBarry Smith ierr = MPI_Allreduce(isend,irecv,5,MPI_INT,MPI_SUM,matin->comm);CHKERRQ(ierr); 13604e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 13614e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 13624e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 13634e220ebcSLois Curfman McInnes info->memory = irecv[3]; 13644e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 13650ac07820SSatish Balay } 13665a5d4f66SBarry Smith info->rows_global = (double)a->M; 13675a5d4f66SBarry Smith info->columns_global = (double)a->N; 13685a5d4f66SBarry Smith info->rows_local = (double)a->m; 13695a5d4f66SBarry Smith info->columns_local = (double)a->N; 13704e220ebcSLois Curfman McInnes info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */ 13714e220ebcSLois Curfman McInnes info->fill_ratio_needed = 0; 13724e220ebcSLois Curfman McInnes info->factor_mallocs = 0; 13733a40ed3dSBarry Smith PetscFunctionReturn(0); 13740ac07820SSatish Balay } 13750ac07820SSatish Balay 13765615d1e5SSatish Balay #undef __FUNC__ 13775615d1e5SSatish Balay #define __FUNC__ "MatSetOption_MPIBAIJ" 1378ec1ea8d8SLois Curfman McInnes int MatSetOption_MPIBAIJ(Mat A,MatOption op) 137958667388SSatish Balay { 138058667388SSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ *) A->data; 138158667388SSatish Balay 1382d64ed03dSBarry Smith PetscFunctionBegin; 138358667388SSatish Balay if (op == MAT_NO_NEW_NONZERO_LOCATIONS || 138458667388SSatish Balay op == MAT_YES_NEW_NONZERO_LOCATIONS || 13856da5968aSLois Curfman McInnes op == MAT_COLUMNS_UNSORTED || 1386c2653b3dSLois Curfman McInnes op == MAT_COLUMNS_SORTED || 138796854ed6SLois Curfman McInnes op == MAT_NEW_NONZERO_ALLOCATION_ERROR || 1388c2653b3dSLois Curfman McInnes op == MAT_NEW_NONZERO_LOCATION_ERROR) { 1389b1fbbac0SLois Curfman McInnes MatSetOption(a->A,op); 1390b1fbbac0SLois Curfman McInnes MatSetOption(a->B,op); 1391b1fbbac0SLois Curfman McInnes } else if (op == MAT_ROW_ORIENTED) { 1392aeafbbfcSLois Curfman McInnes a->roworiented = 1; 139358667388SSatish Balay MatSetOption(a->A,op); 139458667388SSatish Balay MatSetOption(a->B,op); 1395b1fbbac0SLois Curfman McInnes } else if (op == MAT_ROWS_SORTED || 13966da5968aSLois Curfman McInnes op == MAT_ROWS_UNSORTED || 139758667388SSatish Balay op == MAT_SYMMETRIC || 139858667388SSatish Balay op == MAT_STRUCTURALLY_SYMMETRIC || 139958667388SSatish Balay op == MAT_YES_NEW_DIAGONALS) 140058667388SSatish Balay PLogInfo(A,"Info:MatSetOption_MPIBAIJ:Option ignored\n"); 140158667388SSatish Balay else if (op == MAT_COLUMN_ORIENTED) { 140258667388SSatish Balay a->roworiented = 0; 140358667388SSatish Balay MatSetOption(a->A,op); 140458667388SSatish Balay MatSetOption(a->B,op); 14052b362799SSatish Balay } else if (op == MAT_IGNORE_OFF_PROC_ENTRIES) { 140690f02eecSBarry Smith a->donotstash = 1; 1407d64ed03dSBarry Smith } else if (op == MAT_NO_NEW_DIAGONALS) { 1408d64ed03dSBarry Smith SETERRQ(PETSC_ERR_SUP,0,"MAT_NO_NEW_DIAGONALS"); 1409d64ed03dSBarry Smith } else { 1410d64ed03dSBarry Smith SETERRQ(PETSC_ERR_SUP,0,"unknown option"); 1411d64ed03dSBarry Smith } 14123a40ed3dSBarry Smith PetscFunctionReturn(0); 141358667388SSatish Balay } 141458667388SSatish Balay 14155615d1e5SSatish Balay #undef __FUNC__ 14165615d1e5SSatish Balay #define __FUNC__ "MatTranspose_MPIBAIJ(" 1417ec1ea8d8SLois Curfman McInnes int MatTranspose_MPIBAIJ(Mat A,Mat *matout) 14180ac07820SSatish Balay { 14190ac07820SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *) A->data; 14200ac07820SSatish Balay Mat_SeqBAIJ *Aloc; 14210ac07820SSatish Balay Mat B; 14220ac07820SSatish Balay int ierr,M=baij->M,N=baij->N,*ai,*aj,row,i,*rvals,j,k,col; 14230ac07820SSatish Balay int bs=baij->bs,mbs=baij->mbs; 14240ac07820SSatish Balay Scalar *a; 14250ac07820SSatish Balay 1426d64ed03dSBarry Smith PetscFunctionBegin; 1427a8c6a408SBarry Smith if (matout == PETSC_NULL && M != N) SETERRQ(PETSC_ERR_ARG_SIZ,0,"Square matrix only for in-place"); 14280ac07820SSatish Balay ierr = MatCreateMPIBAIJ(A->comm,baij->bs,PETSC_DECIDE,PETSC_DECIDE,N,M,0,PETSC_NULL,0,PETSC_NULL,&B); 14290ac07820SSatish Balay CHKERRQ(ierr); 14300ac07820SSatish Balay 14310ac07820SSatish Balay /* copy over the A part */ 14320ac07820SSatish Balay Aloc = (Mat_SeqBAIJ*) baij->A->data; 14330ac07820SSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 14340ac07820SSatish Balay row = baij->rstart; 14350ac07820SSatish Balay rvals = (int *) PetscMalloc(bs*sizeof(int)); CHKPTRQ(rvals); 14360ac07820SSatish Balay 14370ac07820SSatish Balay for ( i=0; i<mbs; i++ ) { 14380ac07820SSatish Balay rvals[0] = bs*(baij->rstart + i); 14390ac07820SSatish Balay for ( j=1; j<bs; j++ ) { rvals[j] = rvals[j-1] + 1; } 14400ac07820SSatish Balay for ( j=ai[i]; j<ai[i+1]; j++ ) { 14410ac07820SSatish Balay col = (baij->cstart+aj[j])*bs; 14420ac07820SSatish Balay for (k=0; k<bs; k++ ) { 14430ac07820SSatish Balay ierr = MatSetValues(B,1,&col,bs,rvals,a,INSERT_VALUES);CHKERRQ(ierr); 14440ac07820SSatish Balay col++; a += bs; 14450ac07820SSatish Balay } 14460ac07820SSatish Balay } 14470ac07820SSatish Balay } 14480ac07820SSatish Balay /* copy over the B part */ 14490ac07820SSatish Balay Aloc = (Mat_SeqBAIJ*) baij->B->data; 14500ac07820SSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 14510ac07820SSatish Balay row = baij->rstart*bs; 14520ac07820SSatish Balay for ( i=0; i<mbs; i++ ) { 14530ac07820SSatish Balay rvals[0] = bs*(baij->rstart + i); 14540ac07820SSatish Balay for ( j=1; j<bs; j++ ) { rvals[j] = rvals[j-1] + 1; } 14550ac07820SSatish Balay for ( j=ai[i]; j<ai[i+1]; j++ ) { 14560ac07820SSatish Balay col = baij->garray[aj[j]]*bs; 14570ac07820SSatish Balay for (k=0; k<bs; k++ ) { 14580ac07820SSatish Balay ierr = MatSetValues(B,1,&col,bs,rvals,a,INSERT_VALUES);CHKERRQ(ierr); 14590ac07820SSatish Balay col++; a += bs; 14600ac07820SSatish Balay } 14610ac07820SSatish Balay } 14620ac07820SSatish Balay } 14630ac07820SSatish Balay PetscFree(rvals); 14640ac07820SSatish Balay ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY); CHKERRQ(ierr); 14650ac07820SSatish Balay ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY); CHKERRQ(ierr); 14660ac07820SSatish Balay 14670ac07820SSatish Balay if (matout != PETSC_NULL) { 14680ac07820SSatish Balay *matout = B; 14690ac07820SSatish Balay } else { 14700ac07820SSatish Balay /* This isn't really an in-place transpose .... but free data structures from baij */ 14710ac07820SSatish Balay PetscFree(baij->rowners); 14720ac07820SSatish Balay ierr = MatDestroy(baij->A); CHKERRQ(ierr); 14730ac07820SSatish Balay ierr = MatDestroy(baij->B); CHKERRQ(ierr); 14740ac07820SSatish Balay if (baij->colmap) PetscFree(baij->colmap); 14750ac07820SSatish Balay if (baij->garray) PetscFree(baij->garray); 14760ac07820SSatish Balay if (baij->lvec) VecDestroy(baij->lvec); 14770ac07820SSatish Balay if (baij->Mvctx) VecScatterDestroy(baij->Mvctx); 14780ac07820SSatish Balay PetscFree(baij); 1479f09e8eb9SSatish Balay PetscMemcpy(A,B,sizeof(struct _p_Mat)); 14800ac07820SSatish Balay PetscHeaderDestroy(B); 14810ac07820SSatish Balay } 14823a40ed3dSBarry Smith PetscFunctionReturn(0); 14830ac07820SSatish Balay } 14840e95ebc0SSatish Balay 14855615d1e5SSatish Balay #undef __FUNC__ 14865615d1e5SSatish Balay #define __FUNC__ "MatDiagonalScale_MPIBAIJ" 14870e95ebc0SSatish Balay int MatDiagonalScale_MPIBAIJ(Mat A,Vec ll,Vec rr) 14880e95ebc0SSatish Balay { 14890e95ebc0SSatish Balay Mat a = ((Mat_MPIBAIJ *) A->data)->A; 14900e95ebc0SSatish Balay Mat b = ((Mat_MPIBAIJ *) A->data)->B; 14910e95ebc0SSatish Balay int ierr,s1,s2,s3; 14920e95ebc0SSatish Balay 1493d64ed03dSBarry Smith PetscFunctionBegin; 14940e95ebc0SSatish Balay if (ll) { 14950e95ebc0SSatish Balay ierr = VecGetLocalSize(ll,&s1); CHKERRQ(ierr); 14960e95ebc0SSatish Balay ierr = MatGetLocalSize(A,&s2,&s3); CHKERRQ(ierr); 1497a8c6a408SBarry Smith if (s1!=s2) SETERRQ(PETSC_ERR_ARG_SIZ,0,"non-conforming local sizes"); 14980e95ebc0SSatish Balay ierr = MatDiagonalScale(a,ll,0); CHKERRQ(ierr); 14990e95ebc0SSatish Balay ierr = MatDiagonalScale(b,ll,0); CHKERRQ(ierr); 15000e95ebc0SSatish Balay } 1501a8c6a408SBarry Smith if (rr) SETERRQ(PETSC_ERR_SUP,0,"not supported for right vector"); 15023a40ed3dSBarry Smith PetscFunctionReturn(0); 15030e95ebc0SSatish Balay } 15040e95ebc0SSatish Balay 15055615d1e5SSatish Balay #undef __FUNC__ 15065615d1e5SSatish Balay #define __FUNC__ "MatZeroRows_MPIBAIJ" 1507ec1ea8d8SLois Curfman McInnes int MatZeroRows_MPIBAIJ(Mat A,IS is,Scalar *diag) 15080ac07820SSatish Balay { 15090ac07820SSatish Balay Mat_MPIBAIJ *l = (Mat_MPIBAIJ *) A->data; 15100ac07820SSatish Balay int i,ierr,N, *rows,*owners = l->rowners,size = l->size; 1511a07cd24cSSatish Balay int *procs,*nprocs,j,found,idx,nsends,*work,row; 15120ac07820SSatish Balay int nmax,*svalues,*starts,*owner,nrecvs,rank = l->rank; 15130ac07820SSatish Balay int *rvalues,tag = A->tag,count,base,slen,n,*source; 1514a07cd24cSSatish Balay int *lens,imdex,*lrows,*values,bs=l->bs,rstart_bs=l->rstart_bs; 15150ac07820SSatish Balay MPI_Comm comm = A->comm; 15160ac07820SSatish Balay MPI_Request *send_waits,*recv_waits; 15170ac07820SSatish Balay MPI_Status recv_status,*send_status; 15180ac07820SSatish Balay IS istmp; 15190ac07820SSatish Balay 1520d64ed03dSBarry Smith PetscFunctionBegin; 15210ac07820SSatish Balay ierr = ISGetSize(is,&N); CHKERRQ(ierr); 15220ac07820SSatish Balay ierr = ISGetIndices(is,&rows); CHKERRQ(ierr); 15230ac07820SSatish Balay 15240ac07820SSatish Balay /* first count number of contributors to each processor */ 15250ac07820SSatish Balay nprocs = (int *) PetscMalloc( 2*size*sizeof(int) ); CHKPTRQ(nprocs); 15260ac07820SSatish Balay PetscMemzero(nprocs,2*size*sizeof(int)); procs = nprocs + size; 15270ac07820SSatish Balay owner = (int *) PetscMalloc((N+1)*sizeof(int)); CHKPTRQ(owner); /* see note*/ 15280ac07820SSatish Balay for ( i=0; i<N; i++ ) { 15290ac07820SSatish Balay idx = rows[i]; 15300ac07820SSatish Balay found = 0; 15310ac07820SSatish Balay for ( j=0; j<size; j++ ) { 15320ac07820SSatish Balay if (idx >= owners[j]*bs && idx < owners[j+1]*bs) { 15330ac07820SSatish Balay nprocs[j]++; procs[j] = 1; owner[i] = j; found = 1; break; 15340ac07820SSatish Balay } 15350ac07820SSatish Balay } 1536a8c6a408SBarry Smith if (!found) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Index out of range"); 15370ac07820SSatish Balay } 15380ac07820SSatish Balay nsends = 0; for ( i=0; i<size; i++ ) { nsends += procs[i];} 15390ac07820SSatish Balay 15400ac07820SSatish Balay /* inform other processors of number of messages and max length*/ 15410ac07820SSatish Balay work = (int *) PetscMalloc( size*sizeof(int) ); CHKPTRQ(work); 1542ca161407SBarry Smith ierr = MPI_Allreduce( procs, work,size,MPI_INT,MPI_SUM,comm);CHKERRQ(ierr); 15430ac07820SSatish Balay nrecvs = work[rank]; 1544ca161407SBarry Smith ierr = MPI_Allreduce( nprocs, work,size,MPI_INT,MPI_MAX,comm);CHKERRQ(ierr); 15450ac07820SSatish Balay nmax = work[rank]; 15460ac07820SSatish Balay PetscFree(work); 15470ac07820SSatish Balay 15480ac07820SSatish Balay /* post receives: */ 1549d64ed03dSBarry Smith rvalues = (int *) PetscMalloc((nrecvs+1)*(nmax+1)*sizeof(int)); CHKPTRQ(rvalues); 1550d64ed03dSBarry Smith recv_waits = (MPI_Request *) PetscMalloc((nrecvs+1)*sizeof(MPI_Request));CHKPTRQ(recv_waits); 15510ac07820SSatish Balay for ( i=0; i<nrecvs; i++ ) { 1552ca161407SBarry Smith ierr = MPI_Irecv(rvalues+nmax*i,nmax,MPI_INT,MPI_ANY_SOURCE,tag,comm,recv_waits+i);CHKERRQ(ierr); 15530ac07820SSatish Balay } 15540ac07820SSatish Balay 15550ac07820SSatish Balay /* do sends: 15560ac07820SSatish Balay 1) starts[i] gives the starting index in svalues for stuff going to 15570ac07820SSatish Balay the ith processor 15580ac07820SSatish Balay */ 15590ac07820SSatish Balay svalues = (int *) PetscMalloc( (N+1)*sizeof(int) ); CHKPTRQ(svalues); 1560ca161407SBarry Smith send_waits = (MPI_Request *) PetscMalloc( (nsends+1)*sizeof(MPI_Request));CHKPTRQ(send_waits); 15610ac07820SSatish Balay starts = (int *) PetscMalloc( (size+1)*sizeof(int) ); CHKPTRQ(starts); 15620ac07820SSatish Balay starts[0] = 0; 15630ac07820SSatish Balay for ( i=1; i<size; i++ ) { starts[i] = starts[i-1] + nprocs[i-1];} 15640ac07820SSatish Balay for ( i=0; i<N; i++ ) { 15650ac07820SSatish Balay svalues[starts[owner[i]]++] = rows[i]; 15660ac07820SSatish Balay } 15670ac07820SSatish Balay ISRestoreIndices(is,&rows); 15680ac07820SSatish Balay 15690ac07820SSatish Balay starts[0] = 0; 15700ac07820SSatish Balay for ( i=1; i<size+1; i++ ) { starts[i] = starts[i-1] + nprocs[i-1];} 15710ac07820SSatish Balay count = 0; 15720ac07820SSatish Balay for ( i=0; i<size; i++ ) { 15730ac07820SSatish Balay if (procs[i]) { 1574ca161407SBarry Smith ierr = MPI_Isend(svalues+starts[i],nprocs[i],MPI_INT,i,tag,comm,send_waits+count++);CHKERRQ(ierr); 15750ac07820SSatish Balay } 15760ac07820SSatish Balay } 15770ac07820SSatish Balay PetscFree(starts); 15780ac07820SSatish Balay 15790ac07820SSatish Balay base = owners[rank]*bs; 15800ac07820SSatish Balay 15810ac07820SSatish Balay /* wait on receives */ 15820ac07820SSatish Balay lens = (int *) PetscMalloc( 2*(nrecvs+1)*sizeof(int) ); CHKPTRQ(lens); 15830ac07820SSatish Balay source = lens + nrecvs; 15840ac07820SSatish Balay count = nrecvs; slen = 0; 15850ac07820SSatish Balay while (count) { 1586ca161407SBarry Smith ierr = MPI_Waitany(nrecvs,recv_waits,&imdex,&recv_status);CHKERRQ(ierr); 15870ac07820SSatish Balay /* unpack receives into our local space */ 1588ca161407SBarry Smith ierr = MPI_Get_count(&recv_status,MPI_INT,&n);CHKERRQ(ierr); 15890ac07820SSatish Balay source[imdex] = recv_status.MPI_SOURCE; 15900ac07820SSatish Balay lens[imdex] = n; 15910ac07820SSatish Balay slen += n; 15920ac07820SSatish Balay count--; 15930ac07820SSatish Balay } 15940ac07820SSatish Balay PetscFree(recv_waits); 15950ac07820SSatish Balay 15960ac07820SSatish Balay /* move the data into the send scatter */ 15970ac07820SSatish Balay lrows = (int *) PetscMalloc( (slen+1)*sizeof(int) ); CHKPTRQ(lrows); 15980ac07820SSatish Balay count = 0; 15990ac07820SSatish Balay for ( i=0; i<nrecvs; i++ ) { 16000ac07820SSatish Balay values = rvalues + i*nmax; 16010ac07820SSatish Balay for ( j=0; j<lens[i]; j++ ) { 16020ac07820SSatish Balay lrows[count++] = values[j] - base; 16030ac07820SSatish Balay } 16040ac07820SSatish Balay } 16050ac07820SSatish Balay PetscFree(rvalues); PetscFree(lens); 16060ac07820SSatish Balay PetscFree(owner); PetscFree(nprocs); 16070ac07820SSatish Balay 16080ac07820SSatish Balay /* actually zap the local rows */ 1609029af93fSBarry Smith ierr = ISCreateGeneral(PETSC_COMM_SELF,slen,lrows,&istmp);CHKERRQ(ierr); 16100ac07820SSatish Balay PLogObjectParent(A,istmp); 1611a07cd24cSSatish Balay 1612a07cd24cSSatish Balay ierr = MatZeroRows(l->A,istmp,0); CHKERRQ(ierr); 16130ac07820SSatish Balay ierr = MatZeroRows(l->B,istmp,0); CHKERRQ(ierr); 16140ac07820SSatish Balay ierr = ISDestroy(istmp); CHKERRQ(ierr); 16150ac07820SSatish Balay 1616a07cd24cSSatish Balay if (diag) { 1617a07cd24cSSatish Balay for ( i = 0; i < slen; i++ ) { 1618a07cd24cSSatish Balay row = lrows[i] + rstart_bs; 1619a07cd24cSSatish Balay ierr = MatSetValues(A,1,&row,1,&row,diag,INSERT_VALUES); CHKERRQ(ierr); 1620a07cd24cSSatish Balay } 1621a07cd24cSSatish Balay ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY); CHKERRQ(ierr); 1622a07cd24cSSatish Balay ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY); CHKERRQ(ierr); 1623a07cd24cSSatish Balay } 1624a07cd24cSSatish Balay PetscFree(lrows); 1625a07cd24cSSatish Balay 16260ac07820SSatish Balay /* wait on sends */ 16270ac07820SSatish Balay if (nsends) { 1628d64ed03dSBarry Smith send_status = (MPI_Status *) PetscMalloc(nsends*sizeof(MPI_Status));CHKPTRQ(send_status); 1629ca161407SBarry Smith ierr = MPI_Waitall(nsends,send_waits,send_status);CHKERRQ(ierr); 16300ac07820SSatish Balay PetscFree(send_status); 16310ac07820SSatish Balay } 16320ac07820SSatish Balay PetscFree(send_waits); PetscFree(svalues); 16330ac07820SSatish Balay 16343a40ed3dSBarry Smith PetscFunctionReturn(0); 16350ac07820SSatish Balay } 1636ba4ca20aSSatish Balay extern int MatPrintHelp_SeqBAIJ(Mat); 16375615d1e5SSatish Balay #undef __FUNC__ 16385615d1e5SSatish Balay #define __FUNC__ "MatPrintHelp_MPIBAIJ" 1639ec1ea8d8SLois Curfman McInnes int MatPrintHelp_MPIBAIJ(Mat A) 1640ba4ca20aSSatish Balay { 1641ba4ca20aSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*) A->data; 16423a40ed3dSBarry Smith int ierr; 1643ba4ca20aSSatish Balay 1644d64ed03dSBarry Smith PetscFunctionBegin; 16453a40ed3dSBarry Smith if (!a->rank) { 16463a40ed3dSBarry Smith ierr = MatPrintHelp_SeqBAIJ(a->A);CHKERRQ(ierr); 16473a40ed3dSBarry Smith } 16483a40ed3dSBarry Smith PetscFunctionReturn(0); 1649ba4ca20aSSatish Balay } 16500ac07820SSatish Balay 16515615d1e5SSatish Balay #undef __FUNC__ 16525615d1e5SSatish Balay #define __FUNC__ "MatSetUnfactored_MPIBAIJ" 1653ec1ea8d8SLois Curfman McInnes int MatSetUnfactored_MPIBAIJ(Mat A) 1654bb5a7306SBarry Smith { 1655bb5a7306SBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ*) A->data; 1656bb5a7306SBarry Smith int ierr; 1657d64ed03dSBarry Smith 1658d64ed03dSBarry Smith PetscFunctionBegin; 1659bb5a7306SBarry Smith ierr = MatSetUnfactored(a->A); CHKERRQ(ierr); 16603a40ed3dSBarry Smith PetscFunctionReturn(0); 1661bb5a7306SBarry Smith } 1662bb5a7306SBarry Smith 16630ac07820SSatish Balay static int MatConvertSameType_MPIBAIJ(Mat,Mat *,int); 16640ac07820SSatish Balay 166579bdfe76SSatish Balay /* -------------------------------------------------------------------*/ 166679bdfe76SSatish Balay static struct _MatOps MatOps = { 1667bd16c2feSSatish Balay MatSetValues_MPIBAIJ,MatGetRow_MPIBAIJ,MatRestoreRow_MPIBAIJ,MatMult_MPIBAIJ, 16684c50302cSBarry Smith MatMultAdd_MPIBAIJ,MatMultTrans_MPIBAIJ,MatMultTransAdd_MPIBAIJ,0, 16694c50302cSBarry Smith 0,0,0,0, 16700ac07820SSatish Balay 0,0,MatTranspose_MPIBAIJ,MatGetInfo_MPIBAIJ, 16710e95ebc0SSatish Balay 0,MatGetDiagonal_MPIBAIJ,MatDiagonalScale_MPIBAIJ,MatNorm_MPIBAIJ, 167258667388SSatish Balay MatAssemblyBegin_MPIBAIJ,MatAssemblyEnd_MPIBAIJ,0,MatSetOption_MPIBAIJ, 16734c50302cSBarry Smith MatZeroEntries_MPIBAIJ,MatZeroRows_MPIBAIJ,0, 16744c50302cSBarry Smith 0,0,0,MatGetSize_MPIBAIJ, 16754c50302cSBarry Smith MatGetLocalSize_MPIBAIJ,MatGetOwnershipRange_MPIBAIJ,0,0, 167694a9d846SBarry Smith 0,0,MatConvertSameType_MPIBAIJ,0,0, 1677d212a18eSSatish Balay 0,0,0,MatGetSubMatrices_MPIBAIJ, 1678ba4ca20aSSatish Balay MatIncreaseOverlap_MPIBAIJ,MatGetValues_MPIBAIJ,0,MatPrintHelp_MPIBAIJ, 1679bb5a7306SBarry Smith MatScale_MPIBAIJ,0,0,0,MatGetBlockSize_MPIBAIJ, 1680ab26458aSBarry Smith 0,0,0,0,0,0,MatSetUnfactored_MPIBAIJ,0,MatSetValuesBlocked_MPIBAIJ}; 168179bdfe76SSatish Balay 168279bdfe76SSatish Balay 16835615d1e5SSatish Balay #undef __FUNC__ 16845615d1e5SSatish Balay #define __FUNC__ "MatCreateMPIBAIJ" 168579bdfe76SSatish Balay /*@C 168679bdfe76SSatish Balay MatCreateMPIBAIJ - Creates a sparse parallel matrix in block AIJ format 168779bdfe76SSatish Balay (block compressed row). For good matrix assembly performance 168879bdfe76SSatish Balay the user should preallocate the matrix storage by setting the parameters 168979bdfe76SSatish Balay d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 169079bdfe76SSatish Balay performance can be increased by more than a factor of 50. 169179bdfe76SSatish Balay 169279bdfe76SSatish Balay Input Parameters: 169379bdfe76SSatish Balay . comm - MPI communicator 169479bdfe76SSatish Balay . bs - size of blockk 169579bdfe76SSatish Balay . m - number of local rows (or PETSC_DECIDE to have calculated if M is given) 169692e8d321SLois Curfman McInnes This value should be the same as the local size used in creating the 169792e8d321SLois Curfman McInnes y vector for the matrix-vector product y = Ax. 169892e8d321SLois Curfman McInnes . n - number of local columns (or PETSC_DECIDE to have calculated if N is given) 169992e8d321SLois Curfman McInnes This value should be the same as the local size used in creating the 170092e8d321SLois Curfman McInnes x vector for the matrix-vector product y = Ax. 170179bdfe76SSatish Balay . M - number of global rows (or PETSC_DECIDE to have calculated if m is given) 170292e8d321SLois Curfman McInnes . N - number of global columns (or PETSC_DECIDE to have calculated if n is given) 170379bdfe76SSatish Balay . d_nz - number of block nonzeros per block row in diagonal portion of local 170479bdfe76SSatish Balay submatrix (same for all local rows) 170592e8d321SLois Curfman McInnes . d_nzz - array containing the number of block nonzeros in the various block rows 170692e8d321SLois Curfman McInnes of the in diagonal portion of the local (possibly different for each block 170792e8d321SLois Curfman McInnes row) or PETSC_NULL. You must leave room for the diagonal entry even if 170892e8d321SLois Curfman McInnes it is zero. 170992e8d321SLois Curfman McInnes . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 171079bdfe76SSatish Balay submatrix (same for all local rows). 171192e8d321SLois Curfman McInnes . o_nzz - array containing the number of nonzeros in the various block rows of the 171292e8d321SLois Curfman McInnes off-diagonal portion of the local submatrix (possibly different for 171392e8d321SLois Curfman McInnes each block row) or PETSC_NULL. 171479bdfe76SSatish Balay 171579bdfe76SSatish Balay Output Parameter: 171679bdfe76SSatish Balay . A - the matrix 171779bdfe76SSatish Balay 171879bdfe76SSatish Balay Notes: 171979bdfe76SSatish Balay The user MUST specify either the local or global matrix dimensions 172079bdfe76SSatish Balay (possibly both). 172179bdfe76SSatish Balay 172279bdfe76SSatish Balay Storage Information: 172379bdfe76SSatish Balay For a square global matrix we define each processor's diagonal portion 172479bdfe76SSatish Balay to be its local rows and the corresponding columns (a square submatrix); 172579bdfe76SSatish Balay each processor's off-diagonal portion encompasses the remainder of the 172679bdfe76SSatish Balay local matrix (a rectangular submatrix). 172779bdfe76SSatish Balay 172879bdfe76SSatish Balay The user can specify preallocated storage for the diagonal part of 172979bdfe76SSatish Balay the local submatrix with either d_nz or d_nnz (not both). Set 173079bdfe76SSatish Balay d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic 173179bdfe76SSatish Balay memory allocation. Likewise, specify preallocated storage for the 173279bdfe76SSatish Balay off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 173379bdfe76SSatish Balay 173479bdfe76SSatish Balay Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 173579bdfe76SSatish Balay the figure below we depict these three local rows and all columns (0-11). 173679bdfe76SSatish Balay 173779bdfe76SSatish Balay $ 0 1 2 3 4 5 6 7 8 9 10 11 173879bdfe76SSatish Balay $ ------------------- 173979bdfe76SSatish Balay $ row 3 | o o o d d d o o o o o o 174079bdfe76SSatish Balay $ row 4 | o o o d d d o o o o o o 174179bdfe76SSatish Balay $ row 5 | o o o d d d o o o o o o 174279bdfe76SSatish Balay $ ------------------- 174379bdfe76SSatish Balay $ 174479bdfe76SSatish Balay 174579bdfe76SSatish Balay Thus, any entries in the d locations are stored in the d (diagonal) 174679bdfe76SSatish Balay submatrix, and any entries in the o locations are stored in the 174779bdfe76SSatish Balay o (off-diagonal) submatrix. Note that the d and the o submatrices are 174857b952d6SSatish Balay stored simply in the MATSEQBAIJ format for compressed row storage. 174979bdfe76SSatish Balay 1750d64ed03dSBarry Smith Now d_nz should indicate the number of block nonzeros per row in the d matrix, 1751d64ed03dSBarry Smith and o_nz should indicate the number of block nonzeros per row in the o matrix. 175279bdfe76SSatish Balay In general, for PDE problems in which most nonzeros are near the diagonal, 175392e8d321SLois Curfman McInnes one expects d_nz >> o_nz. For large problems you MUST preallocate memory 175492e8d321SLois Curfman McInnes or you will get TERRIBLE performance; see the users' manual chapter on 17556da5968aSLois Curfman McInnes matrices. 175679bdfe76SSatish Balay 175792e8d321SLois Curfman McInnes .keywords: matrix, block, aij, compressed row, sparse, parallel 175879bdfe76SSatish Balay 175979bdfe76SSatish Balay .seealso: MatCreate(), MatCreateSeqBAIJ(), MatSetValues() 176079bdfe76SSatish Balay @*/ 176179bdfe76SSatish Balay int MatCreateMPIBAIJ(MPI_Comm comm,int bs,int m,int n,int M,int N, 176279bdfe76SSatish Balay int d_nz,int *d_nnz,int o_nz,int *o_nnz,Mat *A) 176379bdfe76SSatish Balay { 176479bdfe76SSatish Balay Mat B; 176579bdfe76SSatish Balay Mat_MPIBAIJ *b; 17664c50302cSBarry Smith int ierr, i,sum[2],work[2],mbs,nbs,Mbs=PETSC_DECIDE,Nbs=PETSC_DECIDE,size; 176779bdfe76SSatish Balay 1768d64ed03dSBarry Smith PetscFunctionBegin; 1769a8c6a408SBarry Smith if (bs < 1) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Invalid block size specified, must be positive"); 17703914022bSBarry Smith 17713914022bSBarry Smith MPI_Comm_size(comm,&size); 17723914022bSBarry Smith if (size == 1) { 17733914022bSBarry Smith if (M == PETSC_DECIDE) M = m; 17743914022bSBarry Smith if (N == PETSC_DECIDE) N = n; 17753914022bSBarry Smith ierr = MatCreateSeqBAIJ(comm,bs,M,N,d_nz,d_nnz,A); CHKERRQ(ierr); 17763a40ed3dSBarry Smith PetscFunctionReturn(0); 17773914022bSBarry Smith } 17783914022bSBarry Smith 177979bdfe76SSatish Balay *A = 0; 1780d4bb536fSBarry Smith PetscHeaderCreate(B,_p_Mat,MAT_COOKIE,MATMPIBAIJ,comm,MatDestroy,MatView); 178179bdfe76SSatish Balay PLogObjectCreate(B); 178279bdfe76SSatish Balay B->data = (void *) (b = PetscNew(Mat_MPIBAIJ)); CHKPTRQ(b); 178379bdfe76SSatish Balay PetscMemzero(b,sizeof(Mat_MPIBAIJ)); 178479bdfe76SSatish Balay PetscMemcpy(&B->ops,&MatOps,sizeof(struct _MatOps)); 17854c50302cSBarry Smith 178679bdfe76SSatish Balay B->destroy = MatDestroy_MPIBAIJ; 178779bdfe76SSatish Balay B->view = MatView_MPIBAIJ; 178890f02eecSBarry Smith B->mapping = 0; 178979bdfe76SSatish Balay B->factor = 0; 179079bdfe76SSatish Balay B->assembled = PETSC_FALSE; 179179bdfe76SSatish Balay 1792e0fa3b82SLois Curfman McInnes B->insertmode = NOT_SET_VALUES; 179379bdfe76SSatish Balay MPI_Comm_rank(comm,&b->rank); 179479bdfe76SSatish Balay MPI_Comm_size(comm,&b->size); 179579bdfe76SSatish Balay 1796d64ed03dSBarry Smith if ( m == PETSC_DECIDE && (d_nnz != PETSC_NULL || o_nnz != PETSC_NULL)) { 1797a8c6a408SBarry Smith SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Cannot have PETSC_DECIDE rows but set d_nnz or o_nnz"); 1798d64ed03dSBarry Smith } 1799a8c6a408SBarry Smith if ( M == PETSC_DECIDE && m == PETSC_DECIDE) { 1800a8c6a408SBarry Smith SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"either M or m should be specified"); 1801a8c6a408SBarry Smith } 1802a8c6a408SBarry Smith if ( N == PETSC_DECIDE && n == PETSC_DECIDE) { 1803a8c6a408SBarry Smith SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"either N or n should be specified"); 1804a8c6a408SBarry Smith } 1805cee3aa6bSSatish Balay if ( M != PETSC_DECIDE && m != PETSC_DECIDE) M = PETSC_DECIDE; 1806cee3aa6bSSatish Balay if ( N != PETSC_DECIDE && n != PETSC_DECIDE) N = PETSC_DECIDE; 180779bdfe76SSatish Balay 180879bdfe76SSatish Balay if (M == PETSC_DECIDE || N == PETSC_DECIDE) { 180979bdfe76SSatish Balay work[0] = m; work[1] = n; 181079bdfe76SSatish Balay mbs = m/bs; nbs = n/bs; 1811ca161407SBarry Smith ierr = MPI_Allreduce( work, sum,2,MPI_INT,MPI_SUM,comm );CHKERRQ(ierr); 181279bdfe76SSatish Balay if (M == PETSC_DECIDE) {M = sum[0]; Mbs = M/bs;} 181379bdfe76SSatish Balay if (N == PETSC_DECIDE) {N = sum[1]; Nbs = N/bs;} 181479bdfe76SSatish Balay } 181579bdfe76SSatish Balay if (m == PETSC_DECIDE) { 181679bdfe76SSatish Balay Mbs = M/bs; 1817a8c6a408SBarry Smith if (Mbs*bs != M) SETERRQ(PETSC_ERR_ARG_SIZ,0,"No of global rows must be divisible by blocksize"); 181879bdfe76SSatish Balay mbs = Mbs/b->size + ((Mbs % b->size) > b->rank); 181979bdfe76SSatish Balay m = mbs*bs; 182079bdfe76SSatish Balay } 182179bdfe76SSatish Balay if (n == PETSC_DECIDE) { 182279bdfe76SSatish Balay Nbs = N/bs; 1823a8c6a408SBarry Smith if (Nbs*bs != N) SETERRQ(PETSC_ERR_ARG_SIZ,0,"No of global cols must be divisible by blocksize"); 182479bdfe76SSatish Balay nbs = Nbs/b->size + ((Nbs % b->size) > b->rank); 182579bdfe76SSatish Balay n = nbs*bs; 182679bdfe76SSatish Balay } 1827a8c6a408SBarry Smith if (mbs*bs != m || nbs*bs != n) { 1828a8c6a408SBarry Smith SETERRQ(PETSC_ERR_ARG_SIZ,0,"No of local rows, cols must be divisible by blocksize"); 1829a8c6a408SBarry Smith } 183079bdfe76SSatish Balay 183179bdfe76SSatish Balay b->m = m; B->m = m; 183279bdfe76SSatish Balay b->n = n; B->n = n; 183379bdfe76SSatish Balay b->N = N; B->N = N; 183479bdfe76SSatish Balay b->M = M; B->M = M; 183579bdfe76SSatish Balay b->bs = bs; 183679bdfe76SSatish Balay b->bs2 = bs*bs; 183779bdfe76SSatish Balay b->mbs = mbs; 183879bdfe76SSatish Balay b->nbs = nbs; 183979bdfe76SSatish Balay b->Mbs = Mbs; 184079bdfe76SSatish Balay b->Nbs = Nbs; 184179bdfe76SSatish Balay 184279bdfe76SSatish Balay /* build local table of row and column ownerships */ 184379bdfe76SSatish Balay b->rowners = (int *) PetscMalloc(2*(b->size+2)*sizeof(int)); CHKPTRQ(b->rowners); 1844f09e8eb9SSatish Balay PLogObjectMemory(B,2*(b->size+2)*sizeof(int)+sizeof(struct _p_Mat)+sizeof(Mat_MPIBAIJ)); 18450ac07820SSatish Balay b->cowners = b->rowners + b->size + 2; 1846ca161407SBarry Smith ierr = MPI_Allgather(&mbs,1,MPI_INT,b->rowners+1,1,MPI_INT,comm);CHKERRQ(ierr); 184779bdfe76SSatish Balay b->rowners[0] = 0; 184879bdfe76SSatish Balay for ( i=2; i<=b->size; i++ ) { 184979bdfe76SSatish Balay b->rowners[i] += b->rowners[i-1]; 185079bdfe76SSatish Balay } 185179bdfe76SSatish Balay b->rstart = b->rowners[b->rank]; 185279bdfe76SSatish Balay b->rend = b->rowners[b->rank+1]; 18534fa0d573SSatish Balay b->rstart_bs = b->rstart * bs; 18544fa0d573SSatish Balay b->rend_bs = b->rend * bs; 18554fa0d573SSatish Balay 1856ca161407SBarry Smith ierr = MPI_Allgather(&nbs,1,MPI_INT,b->cowners+1,1,MPI_INT,comm);CHKERRQ(ierr); 185779bdfe76SSatish Balay b->cowners[0] = 0; 185879bdfe76SSatish Balay for ( i=2; i<=b->size; i++ ) { 185979bdfe76SSatish Balay b->cowners[i] += b->cowners[i-1]; 186079bdfe76SSatish Balay } 186179bdfe76SSatish Balay b->cstart = b->cowners[b->rank]; 186279bdfe76SSatish Balay b->cend = b->cowners[b->rank+1]; 18634fa0d573SSatish Balay b->cstart_bs = b->cstart * bs; 18644fa0d573SSatish Balay b->cend_bs = b->cend * bs; 186579bdfe76SSatish Balay 1866a07cd24cSSatish Balay 186779bdfe76SSatish Balay if (d_nz == PETSC_DEFAULT) d_nz = 5; 1868029af93fSBarry Smith ierr = MatCreateSeqBAIJ(PETSC_COMM_SELF,bs,m,n,d_nz,d_nnz,&b->A); CHKERRQ(ierr); 186979bdfe76SSatish Balay PLogObjectParent(B,b->A); 187079bdfe76SSatish Balay if (o_nz == PETSC_DEFAULT) o_nz = 0; 1871029af93fSBarry Smith ierr = MatCreateSeqBAIJ(PETSC_COMM_SELF,bs,m,N,o_nz,o_nnz,&b->B); CHKERRQ(ierr); 187279bdfe76SSatish Balay PLogObjectParent(B,b->B); 187379bdfe76SSatish Balay 187479bdfe76SSatish Balay /* build cache for off array entries formed */ 187579bdfe76SSatish Balay ierr = StashBuild_Private(&b->stash); CHKERRQ(ierr); 187690f02eecSBarry Smith b->donotstash = 0; 187779bdfe76SSatish Balay b->colmap = 0; 187879bdfe76SSatish Balay b->garray = 0; 187979bdfe76SSatish Balay b->roworiented = 1; 188079bdfe76SSatish Balay 188130793edcSSatish Balay /* stuff used in block assembly */ 188230793edcSSatish Balay b->barray = 0; 188330793edcSSatish Balay 188479bdfe76SSatish Balay /* stuff used for matrix vector multiply */ 188579bdfe76SSatish Balay b->lvec = 0; 188679bdfe76SSatish Balay b->Mvctx = 0; 188779bdfe76SSatish Balay 188879bdfe76SSatish Balay /* stuff for MatGetRow() */ 188979bdfe76SSatish Balay b->rowindices = 0; 189079bdfe76SSatish Balay b->rowvalues = 0; 189179bdfe76SSatish Balay b->getrowactive = PETSC_FALSE; 189279bdfe76SSatish Balay 1893a07cd24cSSatish Balay /* hash table stuff */ 1894a07cd24cSSatish Balay b->ht = 0; 18950bdbc534SSatish Balay b->ht_size = 0; 1896a07cd24cSSatish Balay 189779bdfe76SSatish Balay *A = B; 18983a40ed3dSBarry Smith PetscFunctionReturn(0); 189979bdfe76SSatish Balay } 1900026e39d0SSatish Balay 19015615d1e5SSatish Balay #undef __FUNC__ 19025615d1e5SSatish Balay #define __FUNC__ "MatConvertSameType_MPIBAIJ" 19030ac07820SSatish Balay static int MatConvertSameType_MPIBAIJ(Mat matin,Mat *newmat,int cpvalues) 19040ac07820SSatish Balay { 19050ac07820SSatish Balay Mat mat; 19060ac07820SSatish Balay Mat_MPIBAIJ *a,*oldmat = (Mat_MPIBAIJ *) matin->data; 19070ac07820SSatish Balay int ierr, len=0, flg; 19080ac07820SSatish Balay 1909d64ed03dSBarry Smith PetscFunctionBegin; 19100ac07820SSatish Balay *newmat = 0; 1911d4bb536fSBarry Smith PetscHeaderCreate(mat,_p_Mat,MAT_COOKIE,MATMPIBAIJ,matin->comm,MatDestroy,MatView); 19120ac07820SSatish Balay PLogObjectCreate(mat); 19130ac07820SSatish Balay mat->data = (void *) (a = PetscNew(Mat_MPIBAIJ)); CHKPTRQ(a); 19140ac07820SSatish Balay PetscMemcpy(&mat->ops,&MatOps,sizeof(struct _MatOps)); 19150ac07820SSatish Balay mat->destroy = MatDestroy_MPIBAIJ; 19160ac07820SSatish Balay mat->view = MatView_MPIBAIJ; 19170ac07820SSatish Balay mat->factor = matin->factor; 19180ac07820SSatish Balay mat->assembled = PETSC_TRUE; 19190ac07820SSatish Balay 19200ac07820SSatish Balay a->m = mat->m = oldmat->m; 19210ac07820SSatish Balay a->n = mat->n = oldmat->n; 19220ac07820SSatish Balay a->M = mat->M = oldmat->M; 19230ac07820SSatish Balay a->N = mat->N = oldmat->N; 19240ac07820SSatish Balay 19250ac07820SSatish Balay a->bs = oldmat->bs; 19260ac07820SSatish Balay a->bs2 = oldmat->bs2; 19270ac07820SSatish Balay a->mbs = oldmat->mbs; 19280ac07820SSatish Balay a->nbs = oldmat->nbs; 19290ac07820SSatish Balay a->Mbs = oldmat->Mbs; 19300ac07820SSatish Balay a->Nbs = oldmat->Nbs; 19310ac07820SSatish Balay 19320ac07820SSatish Balay a->rstart = oldmat->rstart; 19330ac07820SSatish Balay a->rend = oldmat->rend; 19340ac07820SSatish Balay a->cstart = oldmat->cstart; 19350ac07820SSatish Balay a->cend = oldmat->cend; 19360ac07820SSatish Balay a->size = oldmat->size; 19370ac07820SSatish Balay a->rank = oldmat->rank; 1938e0fa3b82SLois Curfman McInnes mat->insertmode = NOT_SET_VALUES; 19390ac07820SSatish Balay a->rowvalues = 0; 19400ac07820SSatish Balay a->getrowactive = PETSC_FALSE; 194130793edcSSatish Balay a->barray = 0; 19420ac07820SSatish Balay 19430ac07820SSatish Balay a->rowners = (int *) PetscMalloc(2*(a->size+2)*sizeof(int)); CHKPTRQ(a->rowners); 1944f09e8eb9SSatish Balay PLogObjectMemory(mat,2*(a->size+2)*sizeof(int)+sizeof(struct _p_Mat)+sizeof(Mat_MPIBAIJ)); 19450ac07820SSatish Balay a->cowners = a->rowners + a->size + 2; 19460ac07820SSatish Balay PetscMemcpy(a->rowners,oldmat->rowners,2*(a->size+2)*sizeof(int)); 19470ac07820SSatish Balay ierr = StashInitialize_Private(&a->stash); CHKERRQ(ierr); 19480ac07820SSatish Balay if (oldmat->colmap) { 19490ac07820SSatish Balay a->colmap = (int *) PetscMalloc((a->Nbs)*sizeof(int));CHKPTRQ(a->colmap); 19500ac07820SSatish Balay PLogObjectMemory(mat,(a->Nbs)*sizeof(int)); 19510ac07820SSatish Balay PetscMemcpy(a->colmap,oldmat->colmap,(a->Nbs)*sizeof(int)); 19520ac07820SSatish Balay } else a->colmap = 0; 19530ac07820SSatish Balay if (oldmat->garray && (len = ((Mat_SeqBAIJ *) (oldmat->B->data))->nbs)) { 19540ac07820SSatish Balay a->garray = (int *) PetscMalloc(len*sizeof(int)); CHKPTRQ(a->garray); 19550ac07820SSatish Balay PLogObjectMemory(mat,len*sizeof(int)); 19560ac07820SSatish Balay PetscMemcpy(a->garray,oldmat->garray,len*sizeof(int)); 19570ac07820SSatish Balay } else a->garray = 0; 19580ac07820SSatish Balay 19590ac07820SSatish Balay ierr = VecDuplicate(oldmat->lvec,&a->lvec); CHKERRQ(ierr); 19600ac07820SSatish Balay PLogObjectParent(mat,a->lvec); 19610ac07820SSatish Balay ierr = VecScatterCopy(oldmat->Mvctx,&a->Mvctx); CHKERRQ(ierr); 19620ac07820SSatish Balay PLogObjectParent(mat,a->Mvctx); 19630ac07820SSatish Balay ierr = MatConvert(oldmat->A,MATSAME,&a->A); CHKERRQ(ierr); 19640ac07820SSatish Balay PLogObjectParent(mat,a->A); 19650ac07820SSatish Balay ierr = MatConvert(oldmat->B,MATSAME,&a->B); CHKERRQ(ierr); 19660ac07820SSatish Balay PLogObjectParent(mat,a->B); 19670ac07820SSatish Balay ierr = OptionsHasName(PETSC_NULL,"-help",&flg); CHKERRQ(ierr); 19680ac07820SSatish Balay if (flg) { 19690ac07820SSatish Balay ierr = MatPrintHelp(mat); CHKERRQ(ierr); 19700ac07820SSatish Balay } 19710ac07820SSatish Balay *newmat = mat; 19723a40ed3dSBarry Smith PetscFunctionReturn(0); 19730ac07820SSatish Balay } 197457b952d6SSatish Balay 197557b952d6SSatish Balay #include "sys.h" 197657b952d6SSatish Balay 19775615d1e5SSatish Balay #undef __FUNC__ 19785615d1e5SSatish Balay #define __FUNC__ "MatLoad_MPIBAIJ" 197957b952d6SSatish Balay int MatLoad_MPIBAIJ(Viewer viewer,MatType type,Mat *newmat) 198057b952d6SSatish Balay { 198157b952d6SSatish Balay Mat A; 198257b952d6SSatish Balay int i, nz, ierr, j,rstart, rend, fd; 198357b952d6SSatish Balay Scalar *vals,*buf; 198457b952d6SSatish Balay MPI_Comm comm = ((PetscObject)viewer)->comm; 198557b952d6SSatish Balay MPI_Status status; 1986cee3aa6bSSatish Balay int header[4],rank,size,*rowlengths = 0,M,N,m,*rowners,*browners,maxnz,*cols; 198757b952d6SSatish Balay int *locrowlens,*sndcounts = 0,*procsnz = 0, jj,*mycols,*ibuf; 198857b952d6SSatish Balay int flg,tag = ((PetscObject)viewer)->tag,bs=1,bs2,Mbs,mbs,extra_rows; 198957b952d6SSatish Balay int *dlens,*odlens,*mask,*masked1,*masked2,rowcount,odcount; 199057b952d6SSatish Balay int dcount,kmax,k,nzcount,tmp; 199157b952d6SSatish Balay 1992d64ed03dSBarry Smith PetscFunctionBegin; 199357b952d6SSatish Balay ierr = OptionsGetInt(PETSC_NULL,"-matload_block_size",&bs,&flg);CHKERRQ(ierr); 199457b952d6SSatish Balay bs2 = bs*bs; 199557b952d6SSatish Balay 199657b952d6SSatish Balay MPI_Comm_size(comm,&size); MPI_Comm_rank(comm,&rank); 199757b952d6SSatish Balay if (!rank) { 199857b952d6SSatish Balay ierr = ViewerBinaryGetDescriptor(viewer,&fd); CHKERRQ(ierr); 1999e5638eb3SBarry Smith ierr = PetscBinaryRead(fd,(char *)header,4,PETSC_INT); CHKERRQ(ierr); 2000a8c6a408SBarry Smith if (header[0] != MAT_COOKIE) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,0,"not matrix object"); 2001d64ed03dSBarry Smith if (header[3] < 0) { 2002a8c6a408SBarry Smith SETERRQ(PETSC_ERR_FILE_UNEXPECTED,1,"Matrix stored in special format, cannot load as MPIBAIJ"); 2003d64ed03dSBarry Smith } 20046c5fab8fSBarry Smith } 2005d64ed03dSBarry Smith 2006ca161407SBarry Smith ierr = MPI_Bcast(header+1,3,MPI_INT,0,comm);CHKERRQ(ierr); 200757b952d6SSatish Balay M = header[1]; N = header[2]; 200857b952d6SSatish Balay 2009a8c6a408SBarry Smith if (M != N) SETERRQ(PETSC_ERR_SUP,0,"Can only do square matrices"); 201057b952d6SSatish Balay 201157b952d6SSatish Balay /* 201257b952d6SSatish Balay This code adds extra rows to make sure the number of rows is 201357b952d6SSatish Balay divisible by the blocksize 201457b952d6SSatish Balay */ 201557b952d6SSatish Balay Mbs = M/bs; 201657b952d6SSatish Balay extra_rows = bs - M + bs*(Mbs); 201757b952d6SSatish Balay if (extra_rows == bs) extra_rows = 0; 201857b952d6SSatish Balay else Mbs++; 201957b952d6SSatish Balay if (extra_rows &&!rank) { 2020b0267e0aSLois Curfman McInnes PLogInfo(0,"MatLoad_MPIBAIJ:Padding loaded matrix to match blocksize\n"); 202157b952d6SSatish Balay } 2022537820f0SBarry Smith 202357b952d6SSatish Balay /* determine ownership of all rows */ 202457b952d6SSatish Balay mbs = Mbs/size + ((Mbs % size) > rank); 202557b952d6SSatish Balay m = mbs * bs; 2026cee3aa6bSSatish Balay rowners = (int *) PetscMalloc(2*(size+2)*sizeof(int)); CHKPTRQ(rowners); 2027cee3aa6bSSatish Balay browners = rowners + size + 1; 2028ca161407SBarry Smith ierr = MPI_Allgather(&mbs,1,MPI_INT,rowners+1,1,MPI_INT,comm);CHKERRQ(ierr); 202957b952d6SSatish Balay rowners[0] = 0; 2030cee3aa6bSSatish Balay for ( i=2; i<=size; i++ ) rowners[i] += rowners[i-1]; 2031cee3aa6bSSatish Balay for ( i=0; i<=size; i++ ) browners[i] = rowners[i]*bs; 203257b952d6SSatish Balay rstart = rowners[rank]; 203357b952d6SSatish Balay rend = rowners[rank+1]; 203457b952d6SSatish Balay 203557b952d6SSatish Balay /* distribute row lengths to all processors */ 203657b952d6SSatish Balay locrowlens = (int*) PetscMalloc( (rend-rstart)*bs*sizeof(int) ); CHKPTRQ(locrowlens); 203757b952d6SSatish Balay if (!rank) { 203857b952d6SSatish Balay rowlengths = (int*) PetscMalloc( (M+extra_rows)*sizeof(int) ); CHKPTRQ(rowlengths); 2039e5638eb3SBarry Smith ierr = PetscBinaryRead(fd,rowlengths,M,PETSC_INT); CHKERRQ(ierr); 204057b952d6SSatish Balay for ( i=0; i<extra_rows; i++ ) rowlengths[M+i] = 1; 204157b952d6SSatish Balay sndcounts = (int*) PetscMalloc( size*sizeof(int) ); CHKPTRQ(sndcounts); 2042cee3aa6bSSatish Balay for ( i=0; i<size; i++ ) sndcounts[i] = browners[i+1] - browners[i]; 2043ca161407SBarry Smith ierr = MPI_Scatterv(rowlengths,sndcounts,browners,MPI_INT,locrowlens,(rend-rstart)*bs,MPI_INT,0,comm);CHKERRQ(ierr); 204457b952d6SSatish Balay PetscFree(sndcounts); 2045d64ed03dSBarry Smith } else { 2046ca161407SBarry Smith ierr = MPI_Scatterv(0,0,0,MPI_INT,locrowlens,(rend-rstart)*bs,MPI_INT, 0,comm);CHKERRQ(ierr); 204757b952d6SSatish Balay } 204857b952d6SSatish Balay 204957b952d6SSatish Balay if (!rank) { 205057b952d6SSatish Balay /* calculate the number of nonzeros on each processor */ 205157b952d6SSatish Balay procsnz = (int*) PetscMalloc( size*sizeof(int) ); CHKPTRQ(procsnz); 205257b952d6SSatish Balay PetscMemzero(procsnz,size*sizeof(int)); 205357b952d6SSatish Balay for ( i=0; i<size; i++ ) { 205457b952d6SSatish Balay for ( j=rowners[i]*bs; j< rowners[i+1]*bs; j++ ) { 205557b952d6SSatish Balay procsnz[i] += rowlengths[j]; 205657b952d6SSatish Balay } 205757b952d6SSatish Balay } 205857b952d6SSatish Balay PetscFree(rowlengths); 205957b952d6SSatish Balay 206057b952d6SSatish Balay /* determine max buffer needed and allocate it */ 206157b952d6SSatish Balay maxnz = 0; 206257b952d6SSatish Balay for ( i=0; i<size; i++ ) { 206357b952d6SSatish Balay maxnz = PetscMax(maxnz,procsnz[i]); 206457b952d6SSatish Balay } 206557b952d6SSatish Balay cols = (int *) PetscMalloc( maxnz*sizeof(int) ); CHKPTRQ(cols); 206657b952d6SSatish Balay 206757b952d6SSatish Balay /* read in my part of the matrix column indices */ 206857b952d6SSatish Balay nz = procsnz[0]; 206957b952d6SSatish Balay ibuf = (int *) PetscMalloc( nz*sizeof(int) ); CHKPTRQ(ibuf); 207057b952d6SSatish Balay mycols = ibuf; 2071cee3aa6bSSatish Balay if (size == 1) nz -= extra_rows; 2072e5638eb3SBarry Smith ierr = PetscBinaryRead(fd,mycols,nz,PETSC_INT); CHKERRQ(ierr); 2073cee3aa6bSSatish Balay if (size == 1) for (i=0; i< extra_rows; i++) { mycols[nz+i] = M+i; } 2074cee3aa6bSSatish Balay 207557b952d6SSatish Balay /* read in every ones (except the last) and ship off */ 207657b952d6SSatish Balay for ( i=1; i<size-1; i++ ) { 207757b952d6SSatish Balay nz = procsnz[i]; 2078e5638eb3SBarry Smith ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT); CHKERRQ(ierr); 2079ca161407SBarry Smith ierr = MPI_Send(cols,nz,MPI_INT,i,tag,comm);CHKERRQ(ierr); 208057b952d6SSatish Balay } 208157b952d6SSatish Balay /* read in the stuff for the last proc */ 208257b952d6SSatish Balay if ( size != 1 ) { 208357b952d6SSatish Balay nz = procsnz[size-1] - extra_rows; /* the extra rows are not on the disk */ 2084e5638eb3SBarry Smith ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT); CHKERRQ(ierr); 208557b952d6SSatish Balay for ( i=0; i<extra_rows; i++ ) cols[nz+i] = M+i; 2086ca161407SBarry Smith ierr = MPI_Send(cols,nz+extra_rows,MPI_INT,size-1,tag,comm);CHKERRQ(ierr); 208757b952d6SSatish Balay } 208857b952d6SSatish Balay PetscFree(cols); 2089d64ed03dSBarry Smith } else { 209057b952d6SSatish Balay /* determine buffer space needed for message */ 209157b952d6SSatish Balay nz = 0; 209257b952d6SSatish Balay for ( i=0; i<m; i++ ) { 209357b952d6SSatish Balay nz += locrowlens[i]; 209457b952d6SSatish Balay } 209557b952d6SSatish Balay ibuf = (int*) PetscMalloc( nz*sizeof(int) ); CHKPTRQ(ibuf); 209657b952d6SSatish Balay mycols = ibuf; 209757b952d6SSatish Balay /* receive message of column indices*/ 2098ca161407SBarry Smith ierr = MPI_Recv(mycols,nz,MPI_INT,0,tag,comm,&status);CHKERRQ(ierr); 2099ca161407SBarry Smith ierr = MPI_Get_count(&status,MPI_INT,&maxnz);CHKERRQ(ierr); 2100a8c6a408SBarry Smith if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,0,"something is wrong with file"); 210157b952d6SSatish Balay } 210257b952d6SSatish Balay 210357b952d6SSatish Balay /* loop over local rows, determining number of off diagonal entries */ 2104cee3aa6bSSatish Balay dlens = (int *) PetscMalloc( 2*(rend-rstart+1)*sizeof(int) ); CHKPTRQ(dlens); 2105cee3aa6bSSatish Balay odlens = dlens + (rend-rstart); 210657b952d6SSatish Balay mask = (int *) PetscMalloc( 3*Mbs*sizeof(int) ); CHKPTRQ(mask); 2107cee3aa6bSSatish Balay PetscMemzero(mask,3*Mbs*sizeof(int)); 210857b952d6SSatish Balay masked1 = mask + Mbs; 210957b952d6SSatish Balay masked2 = masked1 + Mbs; 211057b952d6SSatish Balay rowcount = 0; nzcount = 0; 211157b952d6SSatish Balay for ( i=0; i<mbs; i++ ) { 211257b952d6SSatish Balay dcount = 0; 211357b952d6SSatish Balay odcount = 0; 211457b952d6SSatish Balay for ( j=0; j<bs; j++ ) { 211557b952d6SSatish Balay kmax = locrowlens[rowcount]; 211657b952d6SSatish Balay for ( k=0; k<kmax; k++ ) { 211757b952d6SSatish Balay tmp = mycols[nzcount++]/bs; 211857b952d6SSatish Balay if (!mask[tmp]) { 211957b952d6SSatish Balay mask[tmp] = 1; 212057b952d6SSatish Balay if (tmp < rstart || tmp >= rend ) masked2[odcount++] = tmp; 212157b952d6SSatish Balay else masked1[dcount++] = tmp; 212257b952d6SSatish Balay } 212357b952d6SSatish Balay } 212457b952d6SSatish Balay rowcount++; 212557b952d6SSatish Balay } 2126cee3aa6bSSatish Balay 212757b952d6SSatish Balay dlens[i] = dcount; 212857b952d6SSatish Balay odlens[i] = odcount; 2129cee3aa6bSSatish Balay 213057b952d6SSatish Balay /* zero out the mask elements we set */ 213157b952d6SSatish Balay for ( j=0; j<dcount; j++ ) mask[masked1[j]] = 0; 213257b952d6SSatish Balay for ( j=0; j<odcount; j++ ) mask[masked2[j]] = 0; 213357b952d6SSatish Balay } 2134cee3aa6bSSatish Balay 213557b952d6SSatish Balay /* create our matrix */ 2136537820f0SBarry Smith ierr = MatCreateMPIBAIJ(comm,bs,m,PETSC_DECIDE,M+extra_rows,N+extra_rows,0,dlens,0,odlens,newmat); 2137537820f0SBarry Smith CHKERRQ(ierr); 213857b952d6SSatish Balay A = *newmat; 21396d4a8577SBarry Smith MatSetOption(A,MAT_COLUMNS_SORTED); 214057b952d6SSatish Balay 214157b952d6SSatish Balay if (!rank) { 214257b952d6SSatish Balay buf = (Scalar *) PetscMalloc( maxnz*sizeof(Scalar) ); CHKPTRQ(buf); 214357b952d6SSatish Balay /* read in my part of the matrix numerical values */ 214457b952d6SSatish Balay nz = procsnz[0]; 214557b952d6SSatish Balay vals = buf; 2146cee3aa6bSSatish Balay mycols = ibuf; 2147cee3aa6bSSatish Balay if (size == 1) nz -= extra_rows; 2148e5638eb3SBarry Smith ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR); CHKERRQ(ierr); 2149cee3aa6bSSatish Balay if (size == 1) for (i=0; i< extra_rows; i++) { vals[nz+i] = 1.0; } 2150537820f0SBarry Smith 215157b952d6SSatish Balay /* insert into matrix */ 215257b952d6SSatish Balay jj = rstart*bs; 215357b952d6SSatish Balay for ( i=0; i<m; i++ ) { 215457b952d6SSatish Balay ierr = MatSetValues(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr); 215557b952d6SSatish Balay mycols += locrowlens[i]; 215657b952d6SSatish Balay vals += locrowlens[i]; 215757b952d6SSatish Balay jj++; 215857b952d6SSatish Balay } 215957b952d6SSatish Balay /* read in other processors (except the last one) and ship out */ 216057b952d6SSatish Balay for ( i=1; i<size-1; i++ ) { 216157b952d6SSatish Balay nz = procsnz[i]; 216257b952d6SSatish Balay vals = buf; 2163e5638eb3SBarry Smith ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR); CHKERRQ(ierr); 2164ca161407SBarry Smith ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,A->tag,comm);CHKERRQ(ierr); 216557b952d6SSatish Balay } 216657b952d6SSatish Balay /* the last proc */ 216757b952d6SSatish Balay if ( size != 1 ){ 216857b952d6SSatish Balay nz = procsnz[i] - extra_rows; 2169cee3aa6bSSatish Balay vals = buf; 2170e5638eb3SBarry Smith ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR); CHKERRQ(ierr); 217157b952d6SSatish Balay for ( i=0; i<extra_rows; i++ ) vals[nz+i] = 1.0; 2172ca161407SBarry Smith ierr = MPI_Send(vals,nz+extra_rows,MPIU_SCALAR,size-1,A->tag,comm);CHKERRQ(ierr); 217357b952d6SSatish Balay } 217457b952d6SSatish Balay PetscFree(procsnz); 2175d64ed03dSBarry Smith } else { 217657b952d6SSatish Balay /* receive numeric values */ 217757b952d6SSatish Balay buf = (Scalar*) PetscMalloc( nz*sizeof(Scalar) ); CHKPTRQ(buf); 217857b952d6SSatish Balay 217957b952d6SSatish Balay /* receive message of values*/ 218057b952d6SSatish Balay vals = buf; 2181cee3aa6bSSatish Balay mycols = ibuf; 2182ca161407SBarry Smith ierr = MPI_Recv(vals,nz,MPIU_SCALAR,0,A->tag,comm,&status);CHKERRQ(ierr); 2183ca161407SBarry Smith ierr = MPI_Get_count(&status,MPIU_SCALAR,&maxnz);CHKERRQ(ierr); 2184a8c6a408SBarry Smith if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,0,"something is wrong with file"); 218557b952d6SSatish Balay 218657b952d6SSatish Balay /* insert into matrix */ 218757b952d6SSatish Balay jj = rstart*bs; 2188cee3aa6bSSatish Balay for ( i=0; i<m; i++ ) { 218957b952d6SSatish Balay ierr = MatSetValues(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr); 219057b952d6SSatish Balay mycols += locrowlens[i]; 219157b952d6SSatish Balay vals += locrowlens[i]; 219257b952d6SSatish Balay jj++; 219357b952d6SSatish Balay } 219457b952d6SSatish Balay } 219557b952d6SSatish Balay PetscFree(locrowlens); 219657b952d6SSatish Balay PetscFree(buf); 219757b952d6SSatish Balay PetscFree(ibuf); 219857b952d6SSatish Balay PetscFree(rowners); 219957b952d6SSatish Balay PetscFree(dlens); 2200cee3aa6bSSatish Balay PetscFree(mask); 22016d4a8577SBarry Smith ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY); CHKERRQ(ierr); 22026d4a8577SBarry Smith ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY); CHKERRQ(ierr); 22033a40ed3dSBarry Smith PetscFunctionReturn(0); 220457b952d6SSatish Balay } 220557b952d6SSatish Balay 220657b952d6SSatish Balay 2207