1c6db04a5SJed Brown #include <../src/mat/impls/baij/mpi/mpibaij.h> /*I "petscmat.h" I*/ 2c5d9258eSSatish Balay 3b51a4376SLisandro Dalcin #include <petsc/private/hashseti.h> 4c6db04a5SJed Brown #include <petscblaslapack.h> 565a92638SMatthew G. Knepley #include <petscsf.h> 679bdfe76SSatish Balay 726cec326SBarry Smith PetscErrorCode MatDestroy_MPIBAIJ(Mat mat) 826cec326SBarry Smith { 926cec326SBarry Smith Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 1026cec326SBarry Smith 1126cec326SBarry Smith PetscFunctionBegin; 1226cec326SBarry Smith #if defined(PETSC_USE_LOG) 1326cec326SBarry Smith PetscCall(PetscLogObjectState((PetscObject)mat, "Rows=%" PetscInt_FMT ",Cols=%" PetscInt_FMT, mat->rmap->N, mat->cmap->N)); 1426cec326SBarry Smith #endif 1526cec326SBarry Smith PetscCall(MatStashDestroy_Private(&mat->stash)); 1626cec326SBarry Smith PetscCall(MatStashDestroy_Private(&mat->bstash)); 1726cec326SBarry Smith PetscCall(MatDestroy(&baij->A)); 1826cec326SBarry Smith PetscCall(MatDestroy(&baij->B)); 1926cec326SBarry Smith #if defined(PETSC_USE_CTABLE) 2026cec326SBarry Smith PetscCall(PetscHMapIDestroy(&baij->colmap)); 2126cec326SBarry Smith #else 2226cec326SBarry Smith PetscCall(PetscFree(baij->colmap)); 2326cec326SBarry Smith #endif 2426cec326SBarry Smith PetscCall(PetscFree(baij->garray)); 2526cec326SBarry Smith PetscCall(VecDestroy(&baij->lvec)); 2626cec326SBarry Smith PetscCall(VecScatterDestroy(&baij->Mvctx)); 2726cec326SBarry Smith PetscCall(PetscFree2(baij->rowvalues, baij->rowindices)); 2826cec326SBarry Smith PetscCall(PetscFree(baij->barray)); 2926cec326SBarry Smith PetscCall(PetscFree2(baij->hd, baij->ht)); 3026cec326SBarry Smith PetscCall(PetscFree(baij->rangebs)); 3126cec326SBarry Smith PetscCall(PetscFree(mat->data)); 3226cec326SBarry Smith 3326cec326SBarry Smith PetscCall(PetscObjectChangeTypeName((PetscObject)mat, NULL)); 3426cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatStoreValues_C", NULL)); 3526cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatRetrieveValues_C", NULL)); 3626cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMPIBAIJSetPreallocation_C", NULL)); 3726cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMPIBAIJSetPreallocationCSR_C", NULL)); 3826cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDiagonalScaleLocal_C", NULL)); 3926cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatSetHashTableFactor_C", NULL)); 4026cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpibaij_mpisbaij_C", NULL)); 4126cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpibaij_mpiadj_C", NULL)); 4226cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpibaij_mpiaij_C", NULL)); 4326cec326SBarry Smith #if defined(PETSC_HAVE_HYPRE) 4426cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpibaij_hypre_C", NULL)); 4526cec326SBarry Smith #endif 4626cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpibaij_is_C", NULL)); 4726cec326SBarry Smith PetscFunctionReturn(PETSC_SUCCESS); 4826cec326SBarry Smith } 4926cec326SBarry Smith 5026cec326SBarry Smith /* defines MatSetValues_MPI_Hash(), MatAssemblyBegin_MPI_Hash(), and MatAssemblyEnd_MPI_Hash() */ 5126cec326SBarry Smith #define TYPE BAIJ 5226cec326SBarry Smith #include "../src/mat/impls/aij/mpi/mpihashmat.h" 5326cec326SBarry Smith #undef TYPE 5426cec326SBarry Smith 557ea3e4caSstefano_zampini #if defined(PETSC_HAVE_HYPRE) 567ea3e4caSstefano_zampini PETSC_INTERN PetscErrorCode MatConvert_AIJ_HYPRE(Mat, MatType, MatReuse, Mat *); 577ea3e4caSstefano_zampini #endif 587ea3e4caSstefano_zampini 59d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetRowMaxAbs_MPIBAIJ(Mat A, Vec v, PetscInt idx[]) 60d71ae5a4SJacob Faibussowitsch { 617843d17aSBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 624e879edeSHong Zhang PetscInt i, *idxb = NULL, m = A->rmap->n, bs = A->cmap->bs; 634e879edeSHong Zhang PetscScalar *va, *vv; 644e879edeSHong Zhang Vec vB, vA; 654e879edeSHong Zhang const PetscScalar *vb; 667843d17aSBarry Smith 677843d17aSBarry Smith PetscFunctionBegin; 689566063dSJacob Faibussowitsch PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &vA)); 699566063dSJacob Faibussowitsch PetscCall(MatGetRowMaxAbs(a->A, vA, idx)); 704e879edeSHong Zhang 719566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(vA, &va)); 72985db425SBarry Smith if (idx) { 734e879edeSHong Zhang for (i = 0; i < m; i++) { 7426fbe8dcSKarl Rupp if (PetscAbsScalar(va[i])) idx[i] += A->cmap->rstart; 7526fbe8dcSKarl Rupp } 76985db425SBarry Smith } 777843d17aSBarry Smith 789566063dSJacob Faibussowitsch PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &vB)); 799566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m, &idxb)); 809566063dSJacob Faibussowitsch PetscCall(MatGetRowMaxAbs(a->B, vB, idxb)); 817843d17aSBarry Smith 829566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(v, &vv)); 839566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(vB, &vb)); 844e879edeSHong Zhang for (i = 0; i < m; i++) { 8526fbe8dcSKarl Rupp if (PetscAbsScalar(va[i]) < PetscAbsScalar(vb[i])) { 864e879edeSHong Zhang vv[i] = vb[i]; 874e879edeSHong Zhang if (idx) idx[i] = bs * a->garray[idxb[i] / bs] + (idxb[i] % bs); 884e879edeSHong Zhang } else { 894e879edeSHong Zhang vv[i] = va[i]; 909371c9d4SSatish Balay if (idx && PetscAbsScalar(va[i]) == PetscAbsScalar(vb[i]) && idxb[i] != -1 && idx[i] > bs * a->garray[idxb[i] / bs] + (idxb[i] % bs)) idx[i] = bs * a->garray[idxb[i] / bs] + (idxb[i] % bs); 9126fbe8dcSKarl Rupp } 927843d17aSBarry Smith } 939566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(vA, &vv)); 949566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(vA, &va)); 959566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(vB, &vb)); 969566063dSJacob Faibussowitsch PetscCall(PetscFree(idxb)); 979566063dSJacob Faibussowitsch PetscCall(VecDestroy(&vA)); 989566063dSJacob Faibussowitsch PetscCall(VecDestroy(&vB)); 993ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1007843d17aSBarry Smith } 1017843d17aSBarry Smith 102d71ae5a4SJacob Faibussowitsch PetscErrorCode MatStoreValues_MPIBAIJ(Mat mat) 103d71ae5a4SJacob Faibussowitsch { 1047fc3c18eSBarry Smith Mat_MPIBAIJ *aij = (Mat_MPIBAIJ *)mat->data; 1057fc3c18eSBarry Smith 1067fc3c18eSBarry Smith PetscFunctionBegin; 1079566063dSJacob Faibussowitsch PetscCall(MatStoreValues(aij->A)); 1089566063dSJacob Faibussowitsch PetscCall(MatStoreValues(aij->B)); 1093ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1107fc3c18eSBarry Smith } 1117fc3c18eSBarry Smith 112d71ae5a4SJacob Faibussowitsch PetscErrorCode MatRetrieveValues_MPIBAIJ(Mat mat) 113d71ae5a4SJacob Faibussowitsch { 1147fc3c18eSBarry Smith Mat_MPIBAIJ *aij = (Mat_MPIBAIJ *)mat->data; 1157fc3c18eSBarry Smith 1167fc3c18eSBarry Smith PetscFunctionBegin; 1179566063dSJacob Faibussowitsch PetscCall(MatRetrieveValues(aij->A)); 1189566063dSJacob Faibussowitsch PetscCall(MatRetrieveValues(aij->B)); 1193ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1207fc3c18eSBarry Smith } 1217fc3c18eSBarry Smith 122537820f0SBarry Smith /* 123537820f0SBarry Smith Local utility routine that creates a mapping from the global column 12457b952d6SSatish Balay number to the local number in the off-diagonal part of the local 125e06f6af7SJed Brown storage of the matrix. This is done in a non scalable way since the 12657b952d6SSatish Balay length of colmap equals the global matrix length. 12757b952d6SSatish Balay */ 128d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateColmap_MPIBAIJ_Private(Mat mat) 129d71ae5a4SJacob Faibussowitsch { 13057b952d6SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 13157b952d6SSatish Balay Mat_SeqBAIJ *B = (Mat_SeqBAIJ *)baij->B->data; 132d0f46423SBarry Smith PetscInt nbs = B->nbs, i, bs = mat->rmap->bs; 13357b952d6SSatish Balay 134d64ed03dSBarry Smith PetscFunctionBegin; 135aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 136eec179cfSJacob Faibussowitsch PetscCall(PetscHMapICreateWithSize(baij->nbs, &baij->colmap)); 137c76ffc5fSJacob Faibussowitsch for (i = 0; i < nbs; i++) PetscCall(PetscHMapISet(baij->colmap, baij->garray[i] + 1, i * bs + 1)); 13848e59246SSatish Balay #else 1399566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(baij->Nbs + 1, &baij->colmap)); 140928fc39bSSatish Balay for (i = 0; i < nbs; i++) baij->colmap[baij->garray[i]] = i * bs + 1; 14148e59246SSatish Balay #endif 1423ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 14357b952d6SSatish Balay } 14457b952d6SSatish Balay 145d40312a9SBarry Smith #define MatSetValues_SeqBAIJ_A_Private(row, col, value, addv, orow, ocol) \ 146*a8f51744SPierre Jolivet do { \ 14780c1aa95SSatish Balay brow = row / bs; \ 1489371c9d4SSatish Balay rp = aj + ai[brow]; \ 1499371c9d4SSatish Balay ap = aa + bs2 * ai[brow]; \ 1509371c9d4SSatish Balay rmax = aimax[brow]; \ 1519371c9d4SSatish Balay nrow = ailen[brow]; \ 15280c1aa95SSatish Balay bcol = col / bs; \ 1539371c9d4SSatish Balay ridx = row % bs; \ 1549371c9d4SSatish Balay cidx = col % bs; \ 1559371c9d4SSatish Balay low = 0; \ 1569371c9d4SSatish Balay high = nrow; \ 157ab26458aSBarry Smith while (high - low > 3) { \ 158ab26458aSBarry Smith t = (low + high) / 2; \ 159ab26458aSBarry Smith if (rp[t] > bcol) high = t; \ 160ab26458aSBarry Smith else low = t; \ 161ab26458aSBarry Smith } \ 162ab26458aSBarry Smith for (_i = low; _i < high; _i++) { \ 16380c1aa95SSatish Balay if (rp[_i] > bcol) break; \ 16480c1aa95SSatish Balay if (rp[_i] == bcol) { \ 16580c1aa95SSatish Balay bap = ap + bs2 * _i + bs * cidx + ridx; \ 166eada6651SSatish Balay if (addv == ADD_VALUES) *bap += value; \ 167eada6651SSatish Balay else *bap = value; \ 168ac7a638eSSatish Balay goto a_noinsert; \ 16980c1aa95SSatish Balay } \ 17080c1aa95SSatish Balay } \ 17189280ab3SLois Curfman McInnes if (a->nonew == 1) goto a_noinsert; \ 1725f80ce2aSJacob Faibussowitsch PetscCheck(a->nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", orow, ocol); \ 173fef13f97SBarry Smith MatSeqXAIJReallocateAIJ(A, a->mbs, bs2, nrow, brow, bcol, rmax, aa, ai, aj, rp, ap, aimax, a->nonew, MatScalar); \ 17480c1aa95SSatish Balay N = nrow++ - 1; \ 17580c1aa95SSatish Balay /* shift up all the later entries in this row */ \ 1769566063dSJacob Faibussowitsch PetscCall(PetscArraymove(rp + _i + 1, rp + _i, N - _i + 1)); \ 1779566063dSJacob Faibussowitsch PetscCall(PetscArraymove(ap + bs2 * (_i + 1), ap + bs2 * _i, bs2 * (N - _i + 1))); \ 1789566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(ap + bs2 * _i, bs2)); \ 17980c1aa95SSatish Balay rp[_i] = bcol; \ 18080c1aa95SSatish Balay ap[bs2 * _i + bs * cidx + ridx] = value; \ 181ac7a638eSSatish Balay a_noinsert:; \ 18280c1aa95SSatish Balay ailen[brow] = nrow; \ 183*a8f51744SPierre Jolivet } while (0) 18457b952d6SSatish Balay 185d40312a9SBarry Smith #define MatSetValues_SeqBAIJ_B_Private(row, col, value, addv, orow, ocol) \ 186*a8f51744SPierre Jolivet do { \ 187ac7a638eSSatish Balay brow = row / bs; \ 1889371c9d4SSatish Balay rp = bj + bi[brow]; \ 1899371c9d4SSatish Balay ap = ba + bs2 * bi[brow]; \ 1909371c9d4SSatish Balay rmax = bimax[brow]; \ 1919371c9d4SSatish Balay nrow = bilen[brow]; \ 192ac7a638eSSatish Balay bcol = col / bs; \ 1939371c9d4SSatish Balay ridx = row % bs; \ 1949371c9d4SSatish Balay cidx = col % bs; \ 1959371c9d4SSatish Balay low = 0; \ 1969371c9d4SSatish Balay high = nrow; \ 197ac7a638eSSatish Balay while (high - low > 3) { \ 198ac7a638eSSatish Balay t = (low + high) / 2; \ 199ac7a638eSSatish Balay if (rp[t] > bcol) high = t; \ 200ac7a638eSSatish Balay else low = t; \ 201ac7a638eSSatish Balay } \ 202ac7a638eSSatish Balay for (_i = low; _i < high; _i++) { \ 203ac7a638eSSatish Balay if (rp[_i] > bcol) break; \ 204ac7a638eSSatish Balay if (rp[_i] == bcol) { \ 205ac7a638eSSatish Balay bap = ap + bs2 * _i + bs * cidx + ridx; \ 206ac7a638eSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 207ac7a638eSSatish Balay else *bap = value; \ 208ac7a638eSSatish Balay goto b_noinsert; \ 209ac7a638eSSatish Balay } \ 210ac7a638eSSatish Balay } \ 21189280ab3SLois Curfman McInnes if (b->nonew == 1) goto b_noinsert; \ 2125f80ce2aSJacob Faibussowitsch PetscCheck(b->nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", orow, ocol); \ 213fef13f97SBarry Smith MatSeqXAIJReallocateAIJ(B, b->mbs, bs2, nrow, brow, bcol, rmax, ba, bi, bj, rp, ap, bimax, b->nonew, MatScalar); \ 214ac7a638eSSatish Balay N = nrow++ - 1; \ 215ac7a638eSSatish Balay /* shift up all the later entries in this row */ \ 2169566063dSJacob Faibussowitsch PetscCall(PetscArraymove(rp + _i + 1, rp + _i, N - _i + 1)); \ 2179566063dSJacob Faibussowitsch PetscCall(PetscArraymove(ap + bs2 * (_i + 1), ap + bs2 * _i, bs2 * (N - _i + 1))); \ 2189566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(ap + bs2 * _i, bs2)); \ 219ac7a638eSSatish Balay rp[_i] = bcol; \ 220ac7a638eSSatish Balay ap[bs2 * _i + bs * cidx + ridx] = value; \ 221ac7a638eSSatish Balay b_noinsert:; \ 222ac7a638eSSatish Balay bilen[brow] = nrow; \ 223*a8f51744SPierre Jolivet } while (0) 224ac7a638eSSatish Balay 225d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetValues_MPIBAIJ(Mat mat, PetscInt m, const PetscInt im[], PetscInt n, const PetscInt in[], const PetscScalar v[], InsertMode addv) 226d71ae5a4SJacob Faibussowitsch { 22757b952d6SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 22893fea6afSBarry Smith MatScalar value; 229ace3abfcSBarry Smith PetscBool roworiented = baij->roworiented; 230b24ad042SBarry Smith PetscInt i, j, row, col; 231d0f46423SBarry Smith PetscInt rstart_orig = mat->rmap->rstart; 232d0f46423SBarry Smith PetscInt rend_orig = mat->rmap->rend, cstart_orig = mat->cmap->rstart; 233d0f46423SBarry Smith PetscInt cend_orig = mat->cmap->rend, bs = mat->rmap->bs; 23457b952d6SSatish Balay 235eada6651SSatish Balay /* Some Variables required in the macro */ 23680c1aa95SSatish Balay Mat A = baij->A; 23780c1aa95SSatish Balay Mat_SeqBAIJ *a = (Mat_SeqBAIJ *)(A)->data; 238b24ad042SBarry Smith PetscInt *aimax = a->imax, *ai = a->i, *ailen = a->ilen, *aj = a->j; 2393eda8832SBarry Smith MatScalar *aa = a->a; 240ac7a638eSSatish Balay 241ac7a638eSSatish Balay Mat B = baij->B; 242ac7a638eSSatish Balay Mat_SeqBAIJ *b = (Mat_SeqBAIJ *)(B)->data; 243b24ad042SBarry Smith PetscInt *bimax = b->imax, *bi = b->i, *bilen = b->ilen, *bj = b->j; 2443eda8832SBarry Smith MatScalar *ba = b->a; 245ac7a638eSSatish Balay 246b24ad042SBarry Smith PetscInt *rp, ii, nrow, _i, rmax, N, brow, bcol; 247b24ad042SBarry Smith PetscInt low, high, t, ridx, cidx, bs2 = a->bs2; 2483eda8832SBarry Smith MatScalar *ap, *bap; 24980c1aa95SSatish Balay 250d64ed03dSBarry Smith PetscFunctionBegin; 25157b952d6SSatish Balay for (i = 0; i < m; i++) { 2525ef9f2a5SBarry Smith if (im[i] < 0) continue; 2535f80ce2aSJacob Faibussowitsch PetscCheck(im[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, im[i], mat->rmap->N - 1); 25457b952d6SSatish Balay if (im[i] >= rstart_orig && im[i] < rend_orig) { 25557b952d6SSatish Balay row = im[i] - rstart_orig; 25657b952d6SSatish Balay for (j = 0; j < n; j++) { 25757b952d6SSatish Balay if (in[j] >= cstart_orig && in[j] < cend_orig) { 25857b952d6SSatish Balay col = in[j] - cstart_orig; 259db4deed7SKarl Rupp if (roworiented) value = v[i * n + j]; 260db4deed7SKarl Rupp else value = v[i + j * m]; 261d40312a9SBarry Smith MatSetValues_SeqBAIJ_A_Private(row, col, value, addv, im[i], in[j]); 262f7d195e4SLawrence Mitchell } else if (in[j] < 0) { 263f7d195e4SLawrence Mitchell continue; 264f7d195e4SLawrence Mitchell } else { 265f7d195e4SLawrence Mitchell PetscCheck(in[j] < mat->cmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, in[j], mat->cmap->N - 1); 26657b952d6SSatish Balay if (mat->was_assembled) { 26748a46eb9SPierre Jolivet if (!baij->colmap) PetscCall(MatCreateColmap_MPIBAIJ_Private(mat)); 268aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 269eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIGetWithDefault(baij->colmap, in[j] / bs + 1, 0, &col)); 270bba1ac68SSatish Balay col = col - 1; 27148e59246SSatish Balay #else 272bba1ac68SSatish Balay col = baij->colmap[in[j] / bs] - 1; 27348e59246SSatish Balay #endif 274c9ef50b2SBarry Smith if (col < 0 && !((Mat_SeqBAIJ *)(baij->B->data))->nonew) { 2759566063dSJacob Faibussowitsch PetscCall(MatDisAssemble_MPIBAIJ(mat)); 2768295de27SSatish Balay col = in[j]; 2779bf004c3SSatish Balay /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */ 2789bf004c3SSatish Balay B = baij->B; 2799bf004c3SSatish Balay b = (Mat_SeqBAIJ *)(B)->data; 2809371c9d4SSatish Balay bimax = b->imax; 2819371c9d4SSatish Balay bi = b->i; 2829371c9d4SSatish Balay bilen = b->ilen; 2839371c9d4SSatish Balay bj = b->j; 2849bf004c3SSatish Balay ba = b->a; 285f7d195e4SLawrence Mitchell } else { 286f7d195e4SLawrence Mitchell PetscCheck(col >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", im[i], in[j]); 287f7d195e4SLawrence Mitchell col += in[j] % bs; 288f7d195e4SLawrence Mitchell } 2898295de27SSatish Balay } else col = in[j]; 290db4deed7SKarl Rupp if (roworiented) value = v[i * n + j]; 291db4deed7SKarl Rupp else value = v[i + j * m]; 292d40312a9SBarry Smith MatSetValues_SeqBAIJ_B_Private(row, col, value, addv, im[i], in[j]); 2939566063dSJacob Faibussowitsch /* PetscCall(MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv)); */ 29457b952d6SSatish Balay } 29557b952d6SSatish Balay } 296d64ed03dSBarry Smith } else { 2975f80ce2aSJacob Faibussowitsch PetscCheck(!mat->nooffprocentries, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Setting off process row %" PetscInt_FMT " even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set", im[i]); 29890f02eecSBarry Smith if (!baij->donotstash) { 2995080c13bSMatthew G Knepley mat->assembled = PETSC_FALSE; 300ff2fd236SBarry Smith if (roworiented) { 3019566063dSJacob Faibussowitsch PetscCall(MatStashValuesRow_Private(&mat->stash, im[i], n, in, v + i * n, PETSC_FALSE)); 302ff2fd236SBarry Smith } else { 3039566063dSJacob Faibussowitsch PetscCall(MatStashValuesCol_Private(&mat->stash, im[i], n, in, v + i, m, PETSC_FALSE)); 30457b952d6SSatish Balay } 30557b952d6SSatish Balay } 30657b952d6SSatish Balay } 30790f02eecSBarry Smith } 3083ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 30957b952d6SSatish Balay } 31057b952d6SSatish Balay 311d71ae5a4SJacob Faibussowitsch static inline PetscErrorCode MatSetValuesBlocked_SeqBAIJ_Inlined(Mat A, PetscInt row, PetscInt col, const PetscScalar v[], InsertMode is, PetscInt orow, PetscInt ocol) 312d71ae5a4SJacob Faibussowitsch { 313880c6e6aSBarry Smith Mat_SeqBAIJ *a = (Mat_SeqBAIJ *)A->data; 3148ab52850SBarry Smith PetscInt *rp, low, high, t, ii, jj, nrow, i, rmax, N; 315880c6e6aSBarry Smith PetscInt *imax = a->imax, *ai = a->i, *ailen = a->ilen; 3168ab52850SBarry Smith PetscInt *aj = a->j, nonew = a->nonew, bs2 = a->bs2, bs = A->rmap->bs; 317880c6e6aSBarry Smith PetscBool roworiented = a->roworiented; 318880c6e6aSBarry Smith const PetscScalar *value = v; 319880c6e6aSBarry Smith MatScalar *ap, *aa = a->a, *bap; 320880c6e6aSBarry Smith 321880c6e6aSBarry Smith PetscFunctionBegin; 322880c6e6aSBarry Smith rp = aj + ai[row]; 323880c6e6aSBarry Smith ap = aa + bs2 * ai[row]; 324880c6e6aSBarry Smith rmax = imax[row]; 325880c6e6aSBarry Smith nrow = ailen[row]; 3268ab52850SBarry Smith value = v; 3278ab52850SBarry Smith low = 0; 3288ab52850SBarry Smith high = nrow; 329880c6e6aSBarry Smith while (high - low > 7) { 330880c6e6aSBarry Smith t = (low + high) / 2; 331880c6e6aSBarry Smith if (rp[t] > col) high = t; 332880c6e6aSBarry Smith else low = t; 333880c6e6aSBarry Smith } 334880c6e6aSBarry Smith for (i = low; i < high; i++) { 335880c6e6aSBarry Smith if (rp[i] > col) break; 336880c6e6aSBarry Smith if (rp[i] == col) { 337880c6e6aSBarry Smith bap = ap + bs2 * i; 338880c6e6aSBarry Smith if (roworiented) { 339880c6e6aSBarry Smith if (is == ADD_VALUES) { 3408ab52850SBarry Smith for (ii = 0; ii < bs; ii++) { 341ad540459SPierre Jolivet for (jj = ii; jj < bs2; jj += bs) bap[jj] += *value++; 342880c6e6aSBarry Smith } 343880c6e6aSBarry Smith } else { 3448ab52850SBarry Smith for (ii = 0; ii < bs; ii++) { 345ad540459SPierre Jolivet for (jj = ii; jj < bs2; jj += bs) bap[jj] = *value++; 346880c6e6aSBarry Smith } 347880c6e6aSBarry Smith } 348880c6e6aSBarry Smith } else { 349880c6e6aSBarry Smith if (is == ADD_VALUES) { 3508ab52850SBarry Smith for (ii = 0; ii < bs; ii++, value += bs) { 351ad540459SPierre Jolivet for (jj = 0; jj < bs; jj++) bap[jj] += value[jj]; 352880c6e6aSBarry Smith bap += bs; 353880c6e6aSBarry Smith } 354880c6e6aSBarry Smith } else { 3558ab52850SBarry Smith for (ii = 0; ii < bs; ii++, value += bs) { 356ad540459SPierre Jolivet for (jj = 0; jj < bs; jj++) bap[jj] = value[jj]; 357880c6e6aSBarry Smith bap += bs; 358880c6e6aSBarry Smith } 359880c6e6aSBarry Smith } 360880c6e6aSBarry Smith } 361880c6e6aSBarry Smith goto noinsert2; 362880c6e6aSBarry Smith } 363880c6e6aSBarry Smith } 364880c6e6aSBarry Smith if (nonew == 1) goto noinsert2; 3655f80ce2aSJacob Faibussowitsch PetscCheck(nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new global block indexed nonzero block (%" PetscInt_FMT ", %" PetscInt_FMT ") in the matrix", orow, ocol); 366880c6e6aSBarry Smith MatSeqXAIJReallocateAIJ(A, a->mbs, bs2, nrow, row, col, rmax, aa, ai, aj, rp, ap, imax, nonew, MatScalar); 3679371c9d4SSatish Balay N = nrow++ - 1; 3689371c9d4SSatish Balay high++; 369880c6e6aSBarry Smith /* shift up all the later entries in this row */ 3709566063dSJacob Faibussowitsch PetscCall(PetscArraymove(rp + i + 1, rp + i, N - i + 1)); 3719566063dSJacob Faibussowitsch PetscCall(PetscArraymove(ap + bs2 * (i + 1), ap + bs2 * i, bs2 * (N - i + 1))); 372880c6e6aSBarry Smith rp[i] = col; 373880c6e6aSBarry Smith bap = ap + bs2 * i; 374880c6e6aSBarry Smith if (roworiented) { 3758ab52850SBarry Smith for (ii = 0; ii < bs; ii++) { 376ad540459SPierre Jolivet for (jj = ii; jj < bs2; jj += bs) bap[jj] = *value++; 377880c6e6aSBarry Smith } 378880c6e6aSBarry Smith } else { 3798ab52850SBarry Smith for (ii = 0; ii < bs; ii++) { 380ad540459SPierre Jolivet for (jj = 0; jj < bs; jj++) *bap++ = *value++; 381880c6e6aSBarry Smith } 382880c6e6aSBarry Smith } 383880c6e6aSBarry Smith noinsert2:; 384880c6e6aSBarry Smith ailen[row] = nrow; 3853ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 386880c6e6aSBarry Smith } 387880c6e6aSBarry Smith 3888ab52850SBarry Smith /* 3898ab52850SBarry Smith This routine should be optimized so that the block copy at ** Here a copy is required ** below is not needed 3908ab52850SBarry Smith by passing additional stride information into the MatSetValuesBlocked_SeqBAIJ_Inlined() routine 3918ab52850SBarry Smith */ 392d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetValuesBlocked_MPIBAIJ(Mat mat, PetscInt m, const PetscInt im[], PetscInt n, const PetscInt in[], const PetscScalar v[], InsertMode addv) 393d71ae5a4SJacob Faibussowitsch { 394ab26458aSBarry Smith Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 395dd6ea824SBarry Smith const PetscScalar *value; 396f15d580aSBarry Smith MatScalar *barray = baij->barray; 397ace3abfcSBarry Smith PetscBool roworiented = baij->roworiented; 398899cda47SBarry Smith PetscInt i, j, ii, jj, row, col, rstart = baij->rstartbs; 399899cda47SBarry Smith PetscInt rend = baij->rendbs, cstart = baij->cstartbs, stepval; 400d0f46423SBarry Smith PetscInt cend = baij->cendbs, bs = mat->rmap->bs, bs2 = baij->bs2; 401ab26458aSBarry Smith 402b16ae2b1SBarry Smith PetscFunctionBegin; 40330793edcSSatish Balay if (!barray) { 4049566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(bs2, &barray)); 40582502324SSatish Balay baij->barray = barray; 40630793edcSSatish Balay } 40730793edcSSatish Balay 40826fbe8dcSKarl Rupp if (roworiented) stepval = (n - 1) * bs; 40926fbe8dcSKarl Rupp else stepval = (m - 1) * bs; 41026fbe8dcSKarl Rupp 411ab26458aSBarry Smith for (i = 0; i < m; i++) { 4125ef9f2a5SBarry Smith if (im[i] < 0) continue; 4136bdcaf15SBarry Smith PetscCheck(im[i] < baij->Mbs, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Block indexed row too large %" PetscInt_FMT " max %" PetscInt_FMT, im[i], baij->Mbs - 1); 414ab26458aSBarry Smith if (im[i] >= rstart && im[i] < rend) { 415ab26458aSBarry Smith row = im[i] - rstart; 416ab26458aSBarry Smith for (j = 0; j < n; j++) { 41715b57d14SSatish Balay /* If NumCol = 1 then a copy is not required */ 41815b57d14SSatish Balay if ((roworiented) && (n == 1)) { 419f15d580aSBarry Smith barray = (MatScalar *)v + i * bs2; 42015b57d14SSatish Balay } else if ((!roworiented) && (m == 1)) { 421f15d580aSBarry Smith barray = (MatScalar *)v + j * bs2; 42215b57d14SSatish Balay } else { /* Here a copy is required */ 423ab26458aSBarry Smith if (roworiented) { 42453ef36baSBarry Smith value = v + (i * (stepval + bs) + j) * bs; 425ab26458aSBarry Smith } else { 42653ef36baSBarry Smith value = v + (j * (stepval + bs) + i) * bs; 427abef11f7SSatish Balay } 42853ef36baSBarry Smith for (ii = 0; ii < bs; ii++, value += bs + stepval) { 42926fbe8dcSKarl Rupp for (jj = 0; jj < bs; jj++) barray[jj] = value[jj]; 43053ef36baSBarry Smith barray += bs; 43147513183SBarry Smith } 43230793edcSSatish Balay barray -= bs2; 43315b57d14SSatish Balay } 434abef11f7SSatish Balay 435abef11f7SSatish Balay if (in[j] >= cstart && in[j] < cend) { 436abef11f7SSatish Balay col = in[j] - cstart; 4379566063dSJacob Faibussowitsch PetscCall(MatSetValuesBlocked_SeqBAIJ_Inlined(baij->A, row, col, barray, addv, im[i], in[j])); 438f7d195e4SLawrence Mitchell } else if (in[j] < 0) { 439f7d195e4SLawrence Mitchell continue; 440f7d195e4SLawrence Mitchell } else { 441f7d195e4SLawrence Mitchell PetscCheck(in[j] < baij->Nbs, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Block indexed column too large %" PetscInt_FMT " max %" PetscInt_FMT, in[j], baij->Nbs - 1); 442ab26458aSBarry Smith if (mat->was_assembled) { 44348a46eb9SPierre Jolivet if (!baij->colmap) PetscCall(MatCreateColmap_MPIBAIJ_Private(mat)); 444a5eb4965SSatish Balay 4452515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 446aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 4479371c9d4SSatish Balay { 4489371c9d4SSatish Balay PetscInt data; 449eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIGetWithDefault(baij->colmap, in[j] + 1, 0, &data)); 45008401ef6SPierre Jolivet PetscCheck((data - 1) % bs == 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Incorrect colmap"); 451fa46199cSSatish Balay } 45248e59246SSatish Balay #else 45308401ef6SPierre Jolivet PetscCheck((baij->colmap[in[j]] - 1) % bs == 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Incorrect colmap"); 454a5eb4965SSatish Balay #endif 45548e59246SSatish Balay #endif 456aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 457eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIGetWithDefault(baij->colmap, in[j] + 1, 0, &col)); 458fa46199cSSatish Balay col = (col - 1) / bs; 45948e59246SSatish Balay #else 460a5eb4965SSatish Balay col = (baij->colmap[in[j]] - 1) / bs; 46148e59246SSatish Balay #endif 4620e9bae81SBarry Smith if (col < 0 && !((Mat_SeqBAIJ *)(baij->B->data))->nonew) { 4639566063dSJacob Faibussowitsch PetscCall(MatDisAssemble_MPIBAIJ(mat)); 464ab26458aSBarry Smith col = in[j]; 4655f80ce2aSJacob Faibussowitsch } else PetscCheck(col >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new blocked indexed nonzero block (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", im[i], in[j]); 466db4deed7SKarl Rupp } else col = in[j]; 4679566063dSJacob Faibussowitsch PetscCall(MatSetValuesBlocked_SeqBAIJ_Inlined(baij->B, row, col, barray, addv, im[i], in[j])); 468ab26458aSBarry Smith } 469ab26458aSBarry Smith } 470d64ed03dSBarry Smith } else { 4715f80ce2aSJacob Faibussowitsch PetscCheck(!mat->nooffprocentries, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Setting off process block indexed row %" PetscInt_FMT " even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set", im[i]); 472ab26458aSBarry Smith if (!baij->donotstash) { 473ff2fd236SBarry Smith if (roworiented) { 4749566063dSJacob Faibussowitsch PetscCall(MatStashValuesRowBlocked_Private(&mat->bstash, im[i], n, in, v, m, n, i)); 475ff2fd236SBarry Smith } else { 4769566063dSJacob Faibussowitsch PetscCall(MatStashValuesColBlocked_Private(&mat->bstash, im[i], n, in, v, m, n, i)); 477ff2fd236SBarry Smith } 478abef11f7SSatish Balay } 479ab26458aSBarry Smith } 480ab26458aSBarry Smith } 4813ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 482ab26458aSBarry Smith } 4836fa18ffdSBarry Smith 4840bdbc534SSatish Balay #define HASH_KEY 0.6180339887 485b24ad042SBarry Smith #define HASH(size, key, tmp) (tmp = (key)*HASH_KEY, (PetscInt)((size) * (tmp - (PetscInt)tmp))) 486b24ad042SBarry Smith /* #define HASH(size,key) ((PetscInt)((size)*fmod(((key)*HASH_KEY),1))) */ 487b24ad042SBarry Smith /* #define HASH(size,key,tmp) ((PetscInt)((size)*fmod(((key)*HASH_KEY),1))) */ 488d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetValues_MPIBAIJ_HT(Mat mat, PetscInt m, const PetscInt im[], PetscInt n, const PetscInt in[], const PetscScalar v[], InsertMode addv) 489d71ae5a4SJacob Faibussowitsch { 4900bdbc534SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 491ace3abfcSBarry Smith PetscBool roworiented = baij->roworiented; 492b24ad042SBarry Smith PetscInt i, j, row, col; 493d0f46423SBarry Smith PetscInt rstart_orig = mat->rmap->rstart; 494d0f46423SBarry Smith PetscInt rend_orig = mat->rmap->rend, Nbs = baij->Nbs; 495d0f46423SBarry Smith PetscInt h1, key, size = baij->ht_size, bs = mat->rmap->bs, *HT = baij->ht, idx; 496329f5518SBarry Smith PetscReal tmp; 4973eda8832SBarry Smith MatScalar **HD = baij->hd, value; 498b24ad042SBarry Smith PetscInt total_ct = baij->ht_total_ct, insert_ct = baij->ht_insert_ct; 4990bdbc534SSatish Balay 5000bdbc534SSatish Balay PetscFunctionBegin; 5010bdbc534SSatish Balay for (i = 0; i < m; i++) { 50276bd3646SJed Brown if (PetscDefined(USE_DEBUG)) { 5035f80ce2aSJacob Faibussowitsch PetscCheck(im[i] >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Negative row"); 5045f80ce2aSJacob Faibussowitsch PetscCheck(im[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, im[i], mat->rmap->N - 1); 50576bd3646SJed Brown } 5060bdbc534SSatish Balay row = im[i]; 507c2760754SSatish Balay if (row >= rstart_orig && row < rend_orig) { 5080bdbc534SSatish Balay for (j = 0; j < n; j++) { 5090bdbc534SSatish Balay col = in[j]; 510db4deed7SKarl Rupp if (roworiented) value = v[i * n + j]; 511db4deed7SKarl Rupp else value = v[i + j * m]; 512b24ad042SBarry Smith /* Look up PetscInto the Hash Table */ 513c2760754SSatish Balay key = (row / bs) * Nbs + (col / bs) + 1; 514c2760754SSatish Balay h1 = HASH(size, key, tmp); 5150bdbc534SSatish Balay 516c2760754SSatish Balay idx = h1; 51776bd3646SJed Brown if (PetscDefined(USE_DEBUG)) { 518187ce0cbSSatish Balay insert_ct++; 519187ce0cbSSatish Balay total_ct++; 520187ce0cbSSatish Balay if (HT[idx] != key) { 5219371c9d4SSatish Balay for (idx = h1; (idx < size) && (HT[idx] != key); idx++, total_ct++) 5229371c9d4SSatish Balay ; 523187ce0cbSSatish Balay if (idx == size) { 5249371c9d4SSatish Balay for (idx = 0; (idx < h1) && (HT[idx] != key); idx++, total_ct++) 5259371c9d4SSatish Balay ; 5265f80ce2aSJacob Faibussowitsch PetscCheck(idx != h1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "(%" PetscInt_FMT ",%" PetscInt_FMT ") has no entry in the hash table", row, col); 527187ce0cbSSatish Balay } 528187ce0cbSSatish Balay } 52976bd3646SJed Brown } else if (HT[idx] != key) { 5309371c9d4SSatish Balay for (idx = h1; (idx < size) && (HT[idx] != key); idx++) 5319371c9d4SSatish Balay ; 532c2760754SSatish Balay if (idx == size) { 5339371c9d4SSatish Balay for (idx = 0; (idx < h1) && (HT[idx] != key); idx++) 5349371c9d4SSatish Balay ; 5355f80ce2aSJacob Faibussowitsch PetscCheck(idx != h1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "(%" PetscInt_FMT ",%" PetscInt_FMT ") has no entry in the hash table", row, col); 536c2760754SSatish Balay } 537c2760754SSatish Balay } 538c2760754SSatish Balay /* A HASH table entry is found, so insert the values at the correct address */ 539c2760754SSatish Balay if (addv == ADD_VALUES) *(HD[idx] + (col % bs) * bs + (row % bs)) += value; 540c2760754SSatish Balay else *(HD[idx] + (col % bs) * bs + (row % bs)) = value; 5410bdbc534SSatish Balay } 54226fbe8dcSKarl Rupp } else if (!baij->donotstash) { 543ff2fd236SBarry Smith if (roworiented) { 5449566063dSJacob Faibussowitsch PetscCall(MatStashValuesRow_Private(&mat->stash, im[i], n, in, v + i * n, PETSC_FALSE)); 545ff2fd236SBarry Smith } else { 5469566063dSJacob Faibussowitsch PetscCall(MatStashValuesCol_Private(&mat->stash, im[i], n, in, v + i, m, PETSC_FALSE)); 5470bdbc534SSatish Balay } 5480bdbc534SSatish Balay } 5490bdbc534SSatish Balay } 55076bd3646SJed Brown if (PetscDefined(USE_DEBUG)) { 551abf3b562SBarry Smith baij->ht_total_ct += total_ct; 552abf3b562SBarry Smith baij->ht_insert_ct += insert_ct; 55376bd3646SJed Brown } 5543ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5550bdbc534SSatish Balay } 5560bdbc534SSatish Balay 557d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetValuesBlocked_MPIBAIJ_HT(Mat mat, PetscInt m, const PetscInt im[], PetscInt n, const PetscInt in[], const PetscScalar v[], InsertMode addv) 558d71ae5a4SJacob Faibussowitsch { 5590bdbc534SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 560ace3abfcSBarry Smith PetscBool roworiented = baij->roworiented; 561b24ad042SBarry Smith PetscInt i, j, ii, jj, row, col; 562899cda47SBarry Smith PetscInt rstart = baij->rstartbs; 563d0f46423SBarry Smith PetscInt rend = mat->rmap->rend, stepval, bs = mat->rmap->bs, bs2 = baij->bs2, nbs2 = n * bs2; 564b24ad042SBarry Smith PetscInt h1, key, size = baij->ht_size, idx, *HT = baij->ht, Nbs = baij->Nbs; 565329f5518SBarry Smith PetscReal tmp; 5663eda8832SBarry Smith MatScalar **HD = baij->hd, *baij_a; 567dd6ea824SBarry Smith const PetscScalar *v_t, *value; 568b24ad042SBarry Smith PetscInt total_ct = baij->ht_total_ct, insert_ct = baij->ht_insert_ct; 5690bdbc534SSatish Balay 570d0a41580SSatish Balay PetscFunctionBegin; 57126fbe8dcSKarl Rupp if (roworiented) stepval = (n - 1) * bs; 57226fbe8dcSKarl Rupp else stepval = (m - 1) * bs; 57326fbe8dcSKarl Rupp 5740bdbc534SSatish Balay for (i = 0; i < m; i++) { 57576bd3646SJed Brown if (PetscDefined(USE_DEBUG)) { 5765f80ce2aSJacob Faibussowitsch PetscCheck(im[i] >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Negative row: %" PetscInt_FMT, im[i]); 5775f80ce2aSJacob Faibussowitsch PetscCheck(im[i] < baij->Mbs, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, im[i], baij->Mbs - 1); 57876bd3646SJed Brown } 5790bdbc534SSatish Balay row = im[i]; 580ab715e2cSSatish Balay v_t = v + i * nbs2; 581c2760754SSatish Balay if (row >= rstart && row < rend) { 5820bdbc534SSatish Balay for (j = 0; j < n; j++) { 5830bdbc534SSatish Balay col = in[j]; 5840bdbc534SSatish Balay 5850bdbc534SSatish Balay /* Look up into the Hash Table */ 586c2760754SSatish Balay key = row * Nbs + col + 1; 587c2760754SSatish Balay h1 = HASH(size, key, tmp); 5880bdbc534SSatish Balay 589c2760754SSatish Balay idx = h1; 59076bd3646SJed Brown if (PetscDefined(USE_DEBUG)) { 591187ce0cbSSatish Balay total_ct++; 592187ce0cbSSatish Balay insert_ct++; 593187ce0cbSSatish Balay if (HT[idx] != key) { 5949371c9d4SSatish Balay for (idx = h1; (idx < size) && (HT[idx] != key); idx++, total_ct++) 5959371c9d4SSatish Balay ; 596187ce0cbSSatish Balay if (idx == size) { 5979371c9d4SSatish Balay for (idx = 0; (idx < h1) && (HT[idx] != key); idx++, total_ct++) 5989371c9d4SSatish Balay ; 5995f80ce2aSJacob Faibussowitsch PetscCheck(idx != h1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "(%" PetscInt_FMT ",%" PetscInt_FMT ") has no entry in the hash table", row, col); 600187ce0cbSSatish Balay } 601187ce0cbSSatish Balay } 60276bd3646SJed Brown } else if (HT[idx] != key) { 6039371c9d4SSatish Balay for (idx = h1; (idx < size) && (HT[idx] != key); idx++) 6049371c9d4SSatish Balay ; 605c2760754SSatish Balay if (idx == size) { 6069371c9d4SSatish Balay for (idx = 0; (idx < h1) && (HT[idx] != key); idx++) 6079371c9d4SSatish Balay ; 6085f80ce2aSJacob Faibussowitsch PetscCheck(idx != h1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "(%" PetscInt_FMT ",%" PetscInt_FMT ") has no entry in the hash table", row, col); 609c2760754SSatish Balay } 610c2760754SSatish Balay } 611c2760754SSatish Balay baij_a = HD[idx]; 6120bdbc534SSatish Balay if (roworiented) { 613c2760754SSatish Balay /*value = v + i*(stepval+bs)*bs + j*bs;*/ 614187ce0cbSSatish Balay /* value = v + (i*(stepval+bs)+j)*bs; */ 615187ce0cbSSatish Balay value = v_t; 616187ce0cbSSatish Balay v_t += bs; 617fef45726SSatish Balay if (addv == ADD_VALUES) { 618c2760754SSatish Balay for (ii = 0; ii < bs; ii++, value += stepval) { 619ad540459SPierre Jolivet for (jj = ii; jj < bs2; jj += bs) baij_a[jj] += *value++; 620b4cc0f5aSSatish Balay } 621fef45726SSatish Balay } else { 622c2760754SSatish Balay for (ii = 0; ii < bs; ii++, value += stepval) { 623ad540459SPierre Jolivet for (jj = ii; jj < bs2; jj += bs) baij_a[jj] = *value++; 624fef45726SSatish Balay } 625fef45726SSatish Balay } 6260bdbc534SSatish Balay } else { 6270bdbc534SSatish Balay value = v + j * (stepval + bs) * bs + i * bs; 628fef45726SSatish Balay if (addv == ADD_VALUES) { 629b4cc0f5aSSatish Balay for (ii = 0; ii < bs; ii++, value += stepval, baij_a += bs) { 630ad540459SPierre Jolivet for (jj = 0; jj < bs; jj++) baij_a[jj] += *value++; 631fef45726SSatish Balay } 632fef45726SSatish Balay } else { 633fef45726SSatish Balay for (ii = 0; ii < bs; ii++, value += stepval, baij_a += bs) { 634ad540459SPierre Jolivet for (jj = 0; jj < bs; jj++) baij_a[jj] = *value++; 635b4cc0f5aSSatish Balay } 6360bdbc534SSatish Balay } 6370bdbc534SSatish Balay } 6380bdbc534SSatish Balay } 6390bdbc534SSatish Balay } else { 6400bdbc534SSatish Balay if (!baij->donotstash) { 6410bdbc534SSatish Balay if (roworiented) { 6429566063dSJacob Faibussowitsch PetscCall(MatStashValuesRowBlocked_Private(&mat->bstash, im[i], n, in, v, m, n, i)); 6430bdbc534SSatish Balay } else { 6449566063dSJacob Faibussowitsch PetscCall(MatStashValuesColBlocked_Private(&mat->bstash, im[i], n, in, v, m, n, i)); 6450bdbc534SSatish Balay } 6460bdbc534SSatish Balay } 6470bdbc534SSatish Balay } 6480bdbc534SSatish Balay } 64976bd3646SJed Brown if (PetscDefined(USE_DEBUG)) { 650abf3b562SBarry Smith baij->ht_total_ct += total_ct; 651abf3b562SBarry Smith baij->ht_insert_ct += insert_ct; 65276bd3646SJed Brown } 6533ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6540bdbc534SSatish Balay } 655133cdb44SSatish Balay 656d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetValues_MPIBAIJ(Mat mat, PetscInt m, const PetscInt idxm[], PetscInt n, const PetscInt idxn[], PetscScalar v[]) 657d71ae5a4SJacob Faibussowitsch { 658d6de1c52SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 659d0f46423SBarry Smith PetscInt bs = mat->rmap->bs, i, j, bsrstart = mat->rmap->rstart, bsrend = mat->rmap->rend; 660d0f46423SBarry Smith PetscInt bscstart = mat->cmap->rstart, bscend = mat->cmap->rend, row, col, data; 661d6de1c52SSatish Balay 662133cdb44SSatish Balay PetscFunctionBegin; 663d6de1c52SSatish Balay for (i = 0; i < m; i++) { 66454c59aa7SJacob Faibussowitsch if (idxm[i] < 0) continue; /* negative row */ 66554c59aa7SJacob Faibussowitsch PetscCheck(idxm[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, idxm[i], mat->rmap->N - 1); 666d6de1c52SSatish Balay if (idxm[i] >= bsrstart && idxm[i] < bsrend) { 667d6de1c52SSatish Balay row = idxm[i] - bsrstart; 668d6de1c52SSatish Balay for (j = 0; j < n; j++) { 66954c59aa7SJacob Faibussowitsch if (idxn[j] < 0) continue; /* negative column */ 67054c59aa7SJacob Faibussowitsch PetscCheck(idxn[j] < mat->cmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, idxn[j], mat->cmap->N - 1); 671d6de1c52SSatish Balay if (idxn[j] >= bscstart && idxn[j] < bscend) { 672d6de1c52SSatish Balay col = idxn[j] - bscstart; 6739566063dSJacob Faibussowitsch PetscCall(MatGetValues_SeqBAIJ(baij->A, 1, &row, 1, &col, v + i * n + j)); 674d64ed03dSBarry Smith } else { 67548a46eb9SPierre Jolivet if (!baij->colmap) PetscCall(MatCreateColmap_MPIBAIJ_Private(mat)); 676aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 677eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIGetWithDefault(baij->colmap, idxn[j] / bs + 1, 0, &data)); 678fa46199cSSatish Balay data--; 67948e59246SSatish Balay #else 68048e59246SSatish Balay data = baij->colmap[idxn[j] / bs] - 1; 68148e59246SSatish Balay #endif 68248e59246SSatish Balay if ((data < 0) || (baij->garray[data / bs] != idxn[j] / bs)) *(v + i * n + j) = 0.0; 683d9d09a02SSatish Balay else { 68448e59246SSatish Balay col = data + idxn[j] % bs; 6859566063dSJacob Faibussowitsch PetscCall(MatGetValues_SeqBAIJ(baij->B, 1, &row, 1, &col, v + i * n + j)); 686d6de1c52SSatish Balay } 687d6de1c52SSatish Balay } 688d6de1c52SSatish Balay } 689f23aa3ddSBarry Smith } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "Only local values currently supported"); 690d6de1c52SSatish Balay } 6913ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 692d6de1c52SSatish Balay } 693d6de1c52SSatish Balay 694d71ae5a4SJacob Faibussowitsch PetscErrorCode MatNorm_MPIBAIJ(Mat mat, NormType type, PetscReal *nrm) 695d71ae5a4SJacob Faibussowitsch { 696d6de1c52SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 697d6de1c52SSatish Balay Mat_SeqBAIJ *amat = (Mat_SeqBAIJ *)baij->A->data, *bmat = (Mat_SeqBAIJ *)baij->B->data; 698d0f46423SBarry Smith PetscInt i, j, bs2 = baij->bs2, bs = baij->A->rmap->bs, nz, row, col; 699329f5518SBarry Smith PetscReal sum = 0.0; 7003eda8832SBarry Smith MatScalar *v; 701d6de1c52SSatish Balay 702d64ed03dSBarry Smith PetscFunctionBegin; 703d6de1c52SSatish Balay if (baij->size == 1) { 7049566063dSJacob Faibussowitsch PetscCall(MatNorm(baij->A, type, nrm)); 705d6de1c52SSatish Balay } else { 706d6de1c52SSatish Balay if (type == NORM_FROBENIUS) { 707d6de1c52SSatish Balay v = amat->a; 7088a62d963SHong Zhang nz = amat->nz * bs2; 7098a62d963SHong Zhang for (i = 0; i < nz; i++) { 7109371c9d4SSatish Balay sum += PetscRealPart(PetscConj(*v) * (*v)); 7119371c9d4SSatish Balay v++; 712d6de1c52SSatish Balay } 713d6de1c52SSatish Balay v = bmat->a; 7148a62d963SHong Zhang nz = bmat->nz * bs2; 7158a62d963SHong Zhang for (i = 0; i < nz; i++) { 7169371c9d4SSatish Balay sum += PetscRealPart(PetscConj(*v) * (*v)); 7179371c9d4SSatish Balay v++; 718d6de1c52SSatish Balay } 7191c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&sum, nrm, 1, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)mat))); 7208f1a2a5eSBarry Smith *nrm = PetscSqrtReal(*nrm); 7218a62d963SHong Zhang } else if (type == NORM_1) { /* max column sum */ 7228a62d963SHong Zhang PetscReal *tmp, *tmp2; 723899cda47SBarry Smith PetscInt *jj, *garray = baij->garray, cstart = baij->rstartbs; 7249566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(mat->cmap->N, &tmp)); 7259566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(mat->cmap->N, &tmp2)); 7269371c9d4SSatish Balay v = amat->a; 7279371c9d4SSatish Balay jj = amat->j; 7288a62d963SHong Zhang for (i = 0; i < amat->nz; i++) { 7298a62d963SHong Zhang for (j = 0; j < bs; j++) { 7308a62d963SHong Zhang col = bs * (cstart + *jj) + j; /* column index */ 7318a62d963SHong Zhang for (row = 0; row < bs; row++) { 7329371c9d4SSatish Balay tmp[col] += PetscAbsScalar(*v); 7339371c9d4SSatish Balay v++; 7348a62d963SHong Zhang } 7358a62d963SHong Zhang } 7368a62d963SHong Zhang jj++; 7378a62d963SHong Zhang } 7389371c9d4SSatish Balay v = bmat->a; 7399371c9d4SSatish Balay jj = bmat->j; 7408a62d963SHong Zhang for (i = 0; i < bmat->nz; i++) { 7418a62d963SHong Zhang for (j = 0; j < bs; j++) { 7428a62d963SHong Zhang col = bs * garray[*jj] + j; 7438a62d963SHong Zhang for (row = 0; row < bs; row++) { 7449371c9d4SSatish Balay tmp[col] += PetscAbsScalar(*v); 7459371c9d4SSatish Balay v++; 7468a62d963SHong Zhang } 7478a62d963SHong Zhang } 7488a62d963SHong Zhang jj++; 7498a62d963SHong Zhang } 7501c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(tmp, tmp2, mat->cmap->N, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)mat))); 7518a62d963SHong Zhang *nrm = 0.0; 752d0f46423SBarry Smith for (j = 0; j < mat->cmap->N; j++) { 7538a62d963SHong Zhang if (tmp2[j] > *nrm) *nrm = tmp2[j]; 7548a62d963SHong Zhang } 7559566063dSJacob Faibussowitsch PetscCall(PetscFree(tmp)); 7569566063dSJacob Faibussowitsch PetscCall(PetscFree(tmp2)); 7578a62d963SHong Zhang } else if (type == NORM_INFINITY) { /* max row sum */ 758577dd1f9SKris Buschelman PetscReal *sums; 7599566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(bs, &sums)); 7608a62d963SHong Zhang sum = 0.0; 7618a62d963SHong Zhang for (j = 0; j < amat->mbs; j++) { 7628a62d963SHong Zhang for (row = 0; row < bs; row++) sums[row] = 0.0; 7638a62d963SHong Zhang v = amat->a + bs2 * amat->i[j]; 7648a62d963SHong Zhang nz = amat->i[j + 1] - amat->i[j]; 7658a62d963SHong Zhang for (i = 0; i < nz; i++) { 7668a62d963SHong Zhang for (col = 0; col < bs; col++) { 7678a62d963SHong Zhang for (row = 0; row < bs; row++) { 7689371c9d4SSatish Balay sums[row] += PetscAbsScalar(*v); 7699371c9d4SSatish Balay v++; 7708a62d963SHong Zhang } 7718a62d963SHong Zhang } 7728a62d963SHong Zhang } 7738a62d963SHong Zhang v = bmat->a + bs2 * bmat->i[j]; 7748a62d963SHong Zhang nz = bmat->i[j + 1] - bmat->i[j]; 7758a62d963SHong Zhang for (i = 0; i < nz; i++) { 7768a62d963SHong Zhang for (col = 0; col < bs; col++) { 7778a62d963SHong Zhang for (row = 0; row < bs; row++) { 7789371c9d4SSatish Balay sums[row] += PetscAbsScalar(*v); 7799371c9d4SSatish Balay v++; 7808a62d963SHong Zhang } 7818a62d963SHong Zhang } 7828a62d963SHong Zhang } 7838a62d963SHong Zhang for (row = 0; row < bs; row++) { 7848a62d963SHong Zhang if (sums[row] > sum) sum = sums[row]; 7858a62d963SHong Zhang } 7868a62d963SHong Zhang } 7871c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&sum, nrm, 1, MPIU_REAL, MPIU_MAX, PetscObjectComm((PetscObject)mat))); 7889566063dSJacob Faibussowitsch PetscCall(PetscFree(sums)); 789ce94432eSBarry Smith } else SETERRQ(PetscObjectComm((PetscObject)mat), PETSC_ERR_SUP, "No support for this norm yet"); 790d64ed03dSBarry Smith } 7913ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 792d6de1c52SSatish Balay } 79357b952d6SSatish Balay 794fef45726SSatish Balay /* 795fef45726SSatish Balay Creates the hash table, and sets the table 796fef45726SSatish Balay This table is created only once. 797fef45726SSatish Balay If new entried need to be added to the matrix 798fef45726SSatish Balay then the hash table has to be destroyed and 799fef45726SSatish Balay recreated. 800fef45726SSatish Balay */ 801d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateHashTable_MPIBAIJ_Private(Mat mat, PetscReal factor) 802d71ae5a4SJacob Faibussowitsch { 803596b8d2eSBarry Smith Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 804596b8d2eSBarry Smith Mat A = baij->A, B = baij->B; 805596b8d2eSBarry Smith Mat_SeqBAIJ *a = (Mat_SeqBAIJ *)A->data, *b = (Mat_SeqBAIJ *)B->data; 806b24ad042SBarry Smith PetscInt i, j, k, nz = a->nz + b->nz, h1, *ai = a->i, *aj = a->j, *bi = b->i, *bj = b->j; 807fca92195SBarry Smith PetscInt ht_size, bs2 = baij->bs2, rstart = baij->rstartbs; 808899cda47SBarry Smith PetscInt cstart = baij->cstartbs, *garray = baij->garray, row, col, Nbs = baij->Nbs; 809b24ad042SBarry Smith PetscInt *HT, key; 8103eda8832SBarry Smith MatScalar **HD; 811329f5518SBarry Smith PetscReal tmp; 8126cf91177SBarry Smith #if defined(PETSC_USE_INFO) 813b24ad042SBarry Smith PetscInt ct = 0, max = 0; 8144a15367fSSatish Balay #endif 815fef45726SSatish Balay 816d64ed03dSBarry Smith PetscFunctionBegin; 8173ba16761SJacob Faibussowitsch if (baij->ht) PetscFunctionReturn(PETSC_SUCCESS); 818fef45726SSatish Balay 819fca92195SBarry Smith baij->ht_size = (PetscInt)(factor * nz); 820fca92195SBarry Smith ht_size = baij->ht_size; 8210bdbc534SSatish Balay 822fef45726SSatish Balay /* Allocate Memory for Hash Table */ 8239566063dSJacob Faibussowitsch PetscCall(PetscCalloc2(ht_size, &baij->hd, ht_size, &baij->ht)); 824b9e4cc15SSatish Balay HD = baij->hd; 825a07cd24cSSatish Balay HT = baij->ht; 826b9e4cc15SSatish Balay 827596b8d2eSBarry Smith /* Loop Over A */ 8280bdbc534SSatish Balay for (i = 0; i < a->mbs; i++) { 829596b8d2eSBarry Smith for (j = ai[i]; j < ai[i + 1]; j++) { 8300bdbc534SSatish Balay row = i + rstart; 8310bdbc534SSatish Balay col = aj[j] + cstart; 832596b8d2eSBarry Smith 833187ce0cbSSatish Balay key = row * Nbs + col + 1; 834fca92195SBarry Smith h1 = HASH(ht_size, key, tmp); 835fca92195SBarry Smith for (k = 0; k < ht_size; k++) { 836fca92195SBarry Smith if (!HT[(h1 + k) % ht_size]) { 837fca92195SBarry Smith HT[(h1 + k) % ht_size] = key; 838fca92195SBarry Smith HD[(h1 + k) % ht_size] = a->a + j * bs2; 839596b8d2eSBarry Smith break; 8406cf91177SBarry Smith #if defined(PETSC_USE_INFO) 841187ce0cbSSatish Balay } else { 842187ce0cbSSatish Balay ct++; 843187ce0cbSSatish Balay #endif 844596b8d2eSBarry Smith } 845187ce0cbSSatish Balay } 8466cf91177SBarry Smith #if defined(PETSC_USE_INFO) 847187ce0cbSSatish Balay if (k > max) max = k; 848187ce0cbSSatish Balay #endif 849596b8d2eSBarry Smith } 850596b8d2eSBarry Smith } 851596b8d2eSBarry Smith /* Loop Over B */ 8520bdbc534SSatish Balay for (i = 0; i < b->mbs; i++) { 853596b8d2eSBarry Smith for (j = bi[i]; j < bi[i + 1]; j++) { 8540bdbc534SSatish Balay row = i + rstart; 8550bdbc534SSatish Balay col = garray[bj[j]]; 856187ce0cbSSatish Balay key = row * Nbs + col + 1; 857fca92195SBarry Smith h1 = HASH(ht_size, key, tmp); 858fca92195SBarry Smith for (k = 0; k < ht_size; k++) { 859fca92195SBarry Smith if (!HT[(h1 + k) % ht_size]) { 860fca92195SBarry Smith HT[(h1 + k) % ht_size] = key; 861fca92195SBarry Smith HD[(h1 + k) % ht_size] = b->a + j * bs2; 862596b8d2eSBarry Smith break; 8636cf91177SBarry Smith #if defined(PETSC_USE_INFO) 864187ce0cbSSatish Balay } else { 865187ce0cbSSatish Balay ct++; 866187ce0cbSSatish Balay #endif 867596b8d2eSBarry Smith } 868187ce0cbSSatish Balay } 8696cf91177SBarry Smith #if defined(PETSC_USE_INFO) 870187ce0cbSSatish Balay if (k > max) max = k; 871187ce0cbSSatish Balay #endif 872596b8d2eSBarry Smith } 873596b8d2eSBarry Smith } 874596b8d2eSBarry Smith 875596b8d2eSBarry Smith /* Print Summary */ 8766cf91177SBarry Smith #if defined(PETSC_USE_INFO) 877fca92195SBarry Smith for (i = 0, j = 0; i < ht_size; i++) { 87826fbe8dcSKarl Rupp if (HT[i]) j++; 879c38d4ed2SBarry Smith } 8809566063dSJacob Faibussowitsch PetscCall(PetscInfo(mat, "Average Search = %5.2g,max search = %" PetscInt_FMT "\n", (!j) ? (double)0.0 : (double)(((PetscReal)(ct + j)) / (double)j), max)); 881187ce0cbSSatish Balay #endif 8823ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 883596b8d2eSBarry Smith } 88457b952d6SSatish Balay 885d71ae5a4SJacob Faibussowitsch PetscErrorCode MatAssemblyBegin_MPIBAIJ(Mat mat, MatAssemblyType mode) 886d71ae5a4SJacob Faibussowitsch { 887bbb85fb3SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 888b24ad042SBarry Smith PetscInt nstash, reallocs; 889bbb85fb3SSatish Balay 890bbb85fb3SSatish Balay PetscFunctionBegin; 8913ba16761SJacob Faibussowitsch if (baij->donotstash || mat->nooffprocentries) PetscFunctionReturn(PETSC_SUCCESS); 892bbb85fb3SSatish Balay 8939566063dSJacob Faibussowitsch PetscCall(MatStashScatterBegin_Private(mat, &mat->stash, mat->rmap->range)); 8949566063dSJacob Faibussowitsch PetscCall(MatStashScatterBegin_Private(mat, &mat->bstash, baij->rangebs)); 8959566063dSJacob Faibussowitsch PetscCall(MatStashGetInfo_Private(&mat->stash, &nstash, &reallocs)); 8969566063dSJacob Faibussowitsch PetscCall(PetscInfo(mat, "Stash has %" PetscInt_FMT " entries,uses %" PetscInt_FMT " mallocs.\n", nstash, reallocs)); 8979566063dSJacob Faibussowitsch PetscCall(MatStashGetInfo_Private(&mat->bstash, &nstash, &reallocs)); 8989566063dSJacob Faibussowitsch PetscCall(PetscInfo(mat, "Block-Stash has %" PetscInt_FMT " entries, uses %" PetscInt_FMT " mallocs.\n", nstash, reallocs)); 8993ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 900bbb85fb3SSatish Balay } 901bbb85fb3SSatish Balay 902d71ae5a4SJacob Faibussowitsch PetscErrorCode MatAssemblyEnd_MPIBAIJ(Mat mat, MatAssemblyType mode) 903d71ae5a4SJacob Faibussowitsch { 904bbb85fb3SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 90591c97fd4SSatish Balay Mat_SeqBAIJ *a = (Mat_SeqBAIJ *)baij->A->data; 906b24ad042SBarry Smith PetscInt i, j, rstart, ncols, flg, bs2 = baij->bs2; 907e44c0bd4SBarry Smith PetscInt *row, *col; 908ace3abfcSBarry Smith PetscBool r1, r2, r3, other_disassembled; 9093eda8832SBarry Smith MatScalar *val; 910b24ad042SBarry Smith PetscMPIInt n; 911bbb85fb3SSatish Balay 912bbb85fb3SSatish Balay PetscFunctionBegin; 9135fd66863SKarl Rupp /* do not use 'b=(Mat_SeqBAIJ*)baij->B->data' as B can be reset in disassembly */ 9144cb17eb5SBarry Smith if (!baij->donotstash && !mat->nooffprocentries) { 915a2d1c673SSatish Balay while (1) { 9169566063dSJacob Faibussowitsch PetscCall(MatStashScatterGetMesg_Private(&mat->stash, &n, &row, &col, &val, &flg)); 917a2d1c673SSatish Balay if (!flg) break; 918a2d1c673SSatish Balay 919bbb85fb3SSatish Balay for (i = 0; i < n;) { 920bbb85fb3SSatish Balay /* Now identify the consecutive vals belonging to the same row */ 92126fbe8dcSKarl Rupp for (j = i, rstart = row[j]; j < n; j++) { 92226fbe8dcSKarl Rupp if (row[j] != rstart) break; 92326fbe8dcSKarl Rupp } 924bbb85fb3SSatish Balay if (j < n) ncols = j - i; 925bbb85fb3SSatish Balay else ncols = n - i; 926bbb85fb3SSatish Balay /* Now assemble all these values with a single function call */ 9279566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPIBAIJ(mat, 1, row + i, ncols, col + i, val + i, mat->insertmode)); 928bbb85fb3SSatish Balay i = j; 929bbb85fb3SSatish Balay } 930bbb85fb3SSatish Balay } 9319566063dSJacob Faibussowitsch PetscCall(MatStashScatterEnd_Private(&mat->stash)); 932a2d1c673SSatish Balay /* Now process the block-stash. Since the values are stashed column-oriented, 933a2d1c673SSatish Balay set the roworiented flag to column oriented, and after MatSetValues() 934a2d1c673SSatish Balay restore the original flags */ 935a2d1c673SSatish Balay r1 = baij->roworiented; 936a2d1c673SSatish Balay r2 = a->roworiented; 93791c97fd4SSatish Balay r3 = ((Mat_SeqBAIJ *)baij->B->data)->roworiented; 93826fbe8dcSKarl Rupp 9397c922b88SBarry Smith baij->roworiented = PETSC_FALSE; 9407c922b88SBarry Smith a->roworiented = PETSC_FALSE; 94126fbe8dcSKarl Rupp 94291c97fd4SSatish Balay (((Mat_SeqBAIJ *)baij->B->data))->roworiented = PETSC_FALSE; /* b->roworiented */ 943a2d1c673SSatish Balay while (1) { 9449566063dSJacob Faibussowitsch PetscCall(MatStashScatterGetMesg_Private(&mat->bstash, &n, &row, &col, &val, &flg)); 945a2d1c673SSatish Balay if (!flg) break; 946a2d1c673SSatish Balay 947a2d1c673SSatish Balay for (i = 0; i < n;) { 948a2d1c673SSatish Balay /* Now identify the consecutive vals belonging to the same row */ 94926fbe8dcSKarl Rupp for (j = i, rstart = row[j]; j < n; j++) { 95026fbe8dcSKarl Rupp if (row[j] != rstart) break; 95126fbe8dcSKarl Rupp } 952a2d1c673SSatish Balay if (j < n) ncols = j - i; 953a2d1c673SSatish Balay else ncols = n - i; 9549566063dSJacob Faibussowitsch PetscCall(MatSetValuesBlocked_MPIBAIJ(mat, 1, row + i, ncols, col + i, val + i * bs2, mat->insertmode)); 955a2d1c673SSatish Balay i = j; 956a2d1c673SSatish Balay } 957a2d1c673SSatish Balay } 9589566063dSJacob Faibussowitsch PetscCall(MatStashScatterEnd_Private(&mat->bstash)); 95926fbe8dcSKarl Rupp 960a2d1c673SSatish Balay baij->roworiented = r1; 961a2d1c673SSatish Balay a->roworiented = r2; 96226fbe8dcSKarl Rupp 96391c97fd4SSatish Balay ((Mat_SeqBAIJ *)baij->B->data)->roworiented = r3; /* b->roworiented */ 964bbb85fb3SSatish Balay } 965bbb85fb3SSatish Balay 9669566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(baij->A, mode)); 9679566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(baij->A, mode)); 968bbb85fb3SSatish Balay 969bbb85fb3SSatish Balay /* determine if any processor has disassembled, if so we must 9706aad120cSJose E. Roman also disassemble ourselves, in order that we may reassemble. */ 971bbb85fb3SSatish Balay /* 972bbb85fb3SSatish Balay if nonzero structure of submatrix B cannot change then we know that 973bbb85fb3SSatish Balay no processor disassembled thus we can skip this stuff 974bbb85fb3SSatish Balay */ 975bbb85fb3SSatish Balay if (!((Mat_SeqBAIJ *)baij->B->data)->nonew) { 9765f9db2b2SJunchao Zhang PetscCall(MPIU_Allreduce(&mat->was_assembled, &other_disassembled, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)mat))); 97748a46eb9SPierre Jolivet if (mat->was_assembled && !other_disassembled) PetscCall(MatDisAssemble_MPIBAIJ(mat)); 978bbb85fb3SSatish Balay } 979bbb85fb3SSatish Balay 98048a46eb9SPierre Jolivet if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) PetscCall(MatSetUpMultiply_MPIBAIJ(mat)); 9819566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(baij->B, mode)); 9829566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(baij->B, mode)); 983bbb85fb3SSatish Balay 9846cf91177SBarry Smith #if defined(PETSC_USE_INFO) 985bbb85fb3SSatish Balay if (baij->ht && mode == MAT_FINAL_ASSEMBLY) { 9869566063dSJacob Faibussowitsch PetscCall(PetscInfo(mat, "Average Hash Table Search in MatSetValues = %5.2f\n", (double)((PetscReal)baij->ht_total_ct) / baij->ht_insert_ct)); 98726fbe8dcSKarl Rupp 988bbb85fb3SSatish Balay baij->ht_total_ct = 0; 989bbb85fb3SSatish Balay baij->ht_insert_ct = 0; 990bbb85fb3SSatish Balay } 991bbb85fb3SSatish Balay #endif 992bbb85fb3SSatish Balay if (baij->ht_flag && !baij->ht && mode == MAT_FINAL_ASSEMBLY) { 9939566063dSJacob Faibussowitsch PetscCall(MatCreateHashTable_MPIBAIJ_Private(mat, baij->ht_fact)); 99426fbe8dcSKarl Rupp 995bbb85fb3SSatish Balay mat->ops->setvalues = MatSetValues_MPIBAIJ_HT; 996bbb85fb3SSatish Balay mat->ops->setvaluesblocked = MatSetValuesBlocked_MPIBAIJ_HT; 997bbb85fb3SSatish Balay } 998bbb85fb3SSatish Balay 9999566063dSJacob Faibussowitsch PetscCall(PetscFree2(baij->rowvalues, baij->rowindices)); 100026fbe8dcSKarl Rupp 1001f4259b30SLisandro Dalcin baij->rowvalues = NULL; 10024f9cfa9eSBarry Smith 10034f9cfa9eSBarry Smith /* if no new nonzero locations are allowed in matrix then only set the matrix state the first time through */ 10044f9cfa9eSBarry Smith if ((!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) || !((Mat_SeqBAIJ *)(baij->A->data))->nonew) { 1005e56f5c9eSBarry Smith PetscObjectState state = baij->A->nonzerostate + baij->B->nonzerostate; 10061c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&state, &mat->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)mat))); 1007e56f5c9eSBarry Smith } 10083ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1009bbb85fb3SSatish Balay } 101057b952d6SSatish Balay 10117da1fb6eSBarry Smith extern PetscErrorCode MatView_SeqBAIJ(Mat, PetscViewer); 10129804daf3SBarry Smith #include <petscdraw.h> 1013d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatView_MPIBAIJ_ASCIIorDraworSocket(Mat mat, PetscViewer viewer) 1014d71ae5a4SJacob Faibussowitsch { 101557b952d6SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 10167da1fb6eSBarry Smith PetscMPIInt rank = baij->rank; 1017d0f46423SBarry Smith PetscInt bs = mat->rmap->bs; 1018ace3abfcSBarry Smith PetscBool iascii, isdraw; 1019b0a32e0cSBarry Smith PetscViewer sviewer; 1020f3ef73ceSBarry Smith PetscViewerFormat format; 102157b952d6SSatish Balay 1022d64ed03dSBarry Smith PetscFunctionBegin; 10239566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &iascii)); 10249566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERDRAW, &isdraw)); 102532077d6dSBarry Smith if (iascii) { 10269566063dSJacob Faibussowitsch PetscCall(PetscViewerGetFormat(viewer, &format)); 1027456192e2SBarry Smith if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 10284e220ebcSLois Curfman McInnes MatInfo info; 10299566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)mat), &rank)); 10309566063dSJacob Faibussowitsch PetscCall(MatGetInfo(mat, MAT_LOCAL, &info)); 10319566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPushSynchronized(viewer)); 10329371c9d4SSatish Balay PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] Local rows %" PetscInt_FMT " nz %" PetscInt_FMT " nz alloced %" PetscInt_FMT " bs %" PetscInt_FMT " mem %g\n", rank, mat->rmap->n, (PetscInt)info.nz_used, (PetscInt)info.nz_allocated, 10339371c9d4SSatish Balay mat->rmap->bs, (double)info.memory)); 10349566063dSJacob Faibussowitsch PetscCall(MatGetInfo(baij->A, MAT_LOCAL, &info)); 10359566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] on-diagonal part: nz %" PetscInt_FMT " \n", rank, (PetscInt)info.nz_used)); 10369566063dSJacob Faibussowitsch PetscCall(MatGetInfo(baij->B, MAT_LOCAL, &info)); 10379566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] off-diagonal part: nz %" PetscInt_FMT " \n", rank, (PetscInt)info.nz_used)); 10389566063dSJacob Faibussowitsch PetscCall(PetscViewerFlush(viewer)); 10399566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPopSynchronized(viewer)); 10409566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "Information on VecScatter used in matrix-vector product: \n")); 10419566063dSJacob Faibussowitsch PetscCall(VecScatterView(baij->Mvctx, viewer)); 10423ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1043fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_INFO) { 10449566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, " block size is %" PetscInt_FMT "\n", bs)); 10453ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 104604929863SHong Zhang } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) { 10473ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 104857b952d6SSatish Balay } 104957b952d6SSatish Balay } 105057b952d6SSatish Balay 10510f5bd95cSBarry Smith if (isdraw) { 1052b0a32e0cSBarry Smith PetscDraw draw; 1053ace3abfcSBarry Smith PetscBool isnull; 10549566063dSJacob Faibussowitsch PetscCall(PetscViewerDrawGetDraw(viewer, 0, &draw)); 10559566063dSJacob Faibussowitsch PetscCall(PetscDrawIsNull(draw, &isnull)); 10563ba16761SJacob Faibussowitsch if (isnull) PetscFunctionReturn(PETSC_SUCCESS); 105757b952d6SSatish Balay } 105857b952d6SSatish Balay 10597da1fb6eSBarry Smith { 106057b952d6SSatish Balay /* assemble the entire matrix onto first processor. */ 106157b952d6SSatish Balay Mat A; 106257b952d6SSatish Balay Mat_SeqBAIJ *Aloc; 1063d0f46423SBarry Smith PetscInt M = mat->rmap->N, N = mat->cmap->N, *ai, *aj, col, i, j, k, *rvals, mbs = baij->mbs; 10643eda8832SBarry Smith MatScalar *a; 10653e219373SBarry Smith const char *matname; 106657b952d6SSatish Balay 1067f204ca49SKris Buschelman /* Here we are creating a temporary matrix, so will assume MPIBAIJ is acceptable */ 1068f204ca49SKris Buschelman /* Perhaps this should be the type of mat? */ 10699566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)mat), &A)); 1070dd400576SPatrick Sanan if (rank == 0) { 10719566063dSJacob Faibussowitsch PetscCall(MatSetSizes(A, M, N, M, N)); 1072d64ed03dSBarry Smith } else { 10739566063dSJacob Faibussowitsch PetscCall(MatSetSizes(A, 0, 0, M, N)); 107457b952d6SSatish Balay } 10759566063dSJacob Faibussowitsch PetscCall(MatSetType(A, MATMPIBAIJ)); 10769566063dSJacob Faibussowitsch PetscCall(MatMPIBAIJSetPreallocation(A, mat->rmap->bs, 0, NULL, 0, NULL)); 10779566063dSJacob Faibussowitsch PetscCall(MatSetOption(A, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_FALSE)); 107857b952d6SSatish Balay 107957b952d6SSatish Balay /* copy over the A part */ 108057b952d6SSatish Balay Aloc = (Mat_SeqBAIJ *)baij->A->data; 10819371c9d4SSatish Balay ai = Aloc->i; 10829371c9d4SSatish Balay aj = Aloc->j; 10839371c9d4SSatish Balay a = Aloc->a; 10849566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(bs, &rvals)); 108557b952d6SSatish Balay 108657b952d6SSatish Balay for (i = 0; i < mbs; i++) { 1087899cda47SBarry Smith rvals[0] = bs * (baij->rstartbs + i); 108826fbe8dcSKarl Rupp for (j = 1; j < bs; j++) rvals[j] = rvals[j - 1] + 1; 108957b952d6SSatish Balay for (j = ai[i]; j < ai[i + 1]; j++) { 1090899cda47SBarry Smith col = (baij->cstartbs + aj[j]) * bs; 109157b952d6SSatish Balay for (k = 0; k < bs; k++) { 10929566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPIBAIJ(A, bs, rvals, 1, &col, a, INSERT_VALUES)); 10939371c9d4SSatish Balay col++; 10949371c9d4SSatish Balay a += bs; 109557b952d6SSatish Balay } 109657b952d6SSatish Balay } 109757b952d6SSatish Balay } 109857b952d6SSatish Balay /* copy over the B part */ 109957b952d6SSatish Balay Aloc = (Mat_SeqBAIJ *)baij->B->data; 11009371c9d4SSatish Balay ai = Aloc->i; 11019371c9d4SSatish Balay aj = Aloc->j; 11029371c9d4SSatish Balay a = Aloc->a; 110357b952d6SSatish Balay for (i = 0; i < mbs; i++) { 1104899cda47SBarry Smith rvals[0] = bs * (baij->rstartbs + i); 110526fbe8dcSKarl Rupp for (j = 1; j < bs; j++) rvals[j] = rvals[j - 1] + 1; 110657b952d6SSatish Balay for (j = ai[i]; j < ai[i + 1]; j++) { 110757b952d6SSatish Balay col = baij->garray[aj[j]] * bs; 110857b952d6SSatish Balay for (k = 0; k < bs; k++) { 11099566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPIBAIJ(A, bs, rvals, 1, &col, a, INSERT_VALUES)); 11109371c9d4SSatish Balay col++; 11119371c9d4SSatish Balay a += bs; 111257b952d6SSatish Balay } 111357b952d6SSatish Balay } 111457b952d6SSatish Balay } 11159566063dSJacob Faibussowitsch PetscCall(PetscFree(rvals)); 11169566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(A, MAT_FINAL_ASSEMBLY)); 11179566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(A, MAT_FINAL_ASSEMBLY)); 111855843e3eSBarry Smith /* 111955843e3eSBarry Smith Everyone has to call to draw the matrix since the graphics waits are 1120b0a32e0cSBarry Smith synchronized across all processors that share the PetscDraw object 112155843e3eSBarry Smith */ 11229566063dSJacob Faibussowitsch PetscCall(PetscViewerGetSubViewer(viewer, PETSC_COMM_SELF, &sviewer)); 112323a3927dSBarry Smith if (((PetscObject)mat)->name) PetscCall(PetscObjectGetName((PetscObject)mat, &matname)); 1124dd400576SPatrick Sanan if (rank == 0) { 112523a3927dSBarry Smith if (((PetscObject)mat)->name) PetscCall(PetscObjectSetName((PetscObject)((Mat_MPIBAIJ *)(A->data))->A, matname)); 11269566063dSJacob Faibussowitsch PetscCall(MatView_SeqBAIJ(((Mat_MPIBAIJ *)(A->data))->A, sviewer)); 112757b952d6SSatish Balay } 11289566063dSJacob Faibussowitsch PetscCall(PetscViewerRestoreSubViewer(viewer, PETSC_COMM_SELF, &sviewer)); 11299566063dSJacob Faibussowitsch PetscCall(PetscViewerFlush(viewer)); 11309566063dSJacob Faibussowitsch PetscCall(MatDestroy(&A)); 113157b952d6SSatish Balay } 11323ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 113357b952d6SSatish Balay } 113457b952d6SSatish Balay 1135618cc2edSLisandro Dalcin /* Used for both MPIBAIJ and MPISBAIJ matrices */ 1136d71ae5a4SJacob Faibussowitsch PetscErrorCode MatView_MPIBAIJ_Binary(Mat mat, PetscViewer viewer) 1137d71ae5a4SJacob Faibussowitsch { 1138b51a4376SLisandro Dalcin Mat_MPIBAIJ *aij = (Mat_MPIBAIJ *)mat->data; 1139b51a4376SLisandro Dalcin Mat_SeqBAIJ *A = (Mat_SeqBAIJ *)aij->A->data; 1140b51a4376SLisandro Dalcin Mat_SeqBAIJ *B = (Mat_SeqBAIJ *)aij->B->data; 1141b51a4376SLisandro Dalcin const PetscInt *garray = aij->garray; 114217a3732bSBarry Smith PetscInt header[4], M, N, m, rs, cs, bs, cnt, i, j, ja, jb, k, l; 114317a3732bSBarry Smith PetscInt64 nz, hnz; 1144b51a4376SLisandro Dalcin PetscInt *rowlens, *colidxs; 1145b51a4376SLisandro Dalcin PetscScalar *matvals; 114617a3732bSBarry Smith PetscMPIInt rank; 1147660746e0SBarry Smith 1148660746e0SBarry Smith PetscFunctionBegin; 11499566063dSJacob Faibussowitsch PetscCall(PetscViewerSetUp(viewer)); 1150b51a4376SLisandro Dalcin 1151b51a4376SLisandro Dalcin M = mat->rmap->N; 1152b51a4376SLisandro Dalcin N = mat->cmap->N; 1153b51a4376SLisandro Dalcin m = mat->rmap->n; 1154b51a4376SLisandro Dalcin rs = mat->rmap->rstart; 1155b51a4376SLisandro Dalcin cs = mat->cmap->rstart; 1156b51a4376SLisandro Dalcin bs = mat->rmap->bs; 1157b51a4376SLisandro Dalcin nz = bs * bs * (A->nz + B->nz); 1158b51a4376SLisandro Dalcin 1159b51a4376SLisandro Dalcin /* write matrix header */ 1160660746e0SBarry Smith header[0] = MAT_FILE_CLASSID; 11619371c9d4SSatish Balay header[1] = M; 11629371c9d4SSatish Balay header[2] = N; 116317a3732bSBarry Smith PetscCallMPI(MPI_Reduce(&nz, &hnz, 1, MPIU_INT64, MPI_SUM, 0, PetscObjectComm((PetscObject)mat))); 116417a3732bSBarry Smith PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)mat), &rank)); 116517a3732bSBarry Smith if (rank == 0) PetscCall(PetscIntCast(hnz, &header[3])); 11669566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryWrite(viewer, header, 4, PETSC_INT)); 1167660746e0SBarry Smith 1168b51a4376SLisandro Dalcin /* fill in and store row lengths */ 11699566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m, &rowlens)); 1170b51a4376SLisandro Dalcin for (cnt = 0, i = 0; i < A->mbs; i++) 11719371c9d4SSatish Balay for (j = 0; j < bs; j++) rowlens[cnt++] = bs * (A->i[i + 1] - A->i[i] + B->i[i + 1] - B->i[i]); 11729566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryWriteAll(viewer, rowlens, m, rs, M, PETSC_INT)); 11739566063dSJacob Faibussowitsch PetscCall(PetscFree(rowlens)); 1174660746e0SBarry Smith 1175b51a4376SLisandro Dalcin /* fill in and store column indices */ 11769566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nz, &colidxs)); 1177b51a4376SLisandro Dalcin for (cnt = 0, i = 0; i < A->mbs; i++) { 1178b51a4376SLisandro Dalcin for (k = 0; k < bs; k++) { 1179b51a4376SLisandro Dalcin for (jb = B->i[i]; jb < B->i[i + 1]; jb++) { 1180b51a4376SLisandro Dalcin if (garray[B->j[jb]] > cs / bs) break; 11819371c9d4SSatish Balay for (l = 0; l < bs; l++) colidxs[cnt++] = bs * garray[B->j[jb]] + l; 1182660746e0SBarry Smith } 1183b51a4376SLisandro Dalcin for (ja = A->i[i]; ja < A->i[i + 1]; ja++) 11849371c9d4SSatish Balay for (l = 0; l < bs; l++) colidxs[cnt++] = bs * A->j[ja] + l + cs; 1185b51a4376SLisandro Dalcin for (; jb < B->i[i + 1]; jb++) 11869371c9d4SSatish Balay for (l = 0; l < bs; l++) colidxs[cnt++] = bs * garray[B->j[jb]] + l; 1187660746e0SBarry Smith } 1188660746e0SBarry Smith } 118917a3732bSBarry Smith PetscCheck(cnt == nz, PETSC_COMM_SELF, PETSC_ERR_LIB, "Internal PETSc error: cnt = %" PetscInt_FMT " nz = %" PetscInt64_FMT, cnt, nz); 11909566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryWriteAll(viewer, colidxs, nz, PETSC_DECIDE, PETSC_DECIDE, PETSC_INT)); 11919566063dSJacob Faibussowitsch PetscCall(PetscFree(colidxs)); 1192660746e0SBarry Smith 1193b51a4376SLisandro Dalcin /* fill in and store nonzero values */ 11949566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nz, &matvals)); 1195b51a4376SLisandro Dalcin for (cnt = 0, i = 0; i < A->mbs; i++) { 1196b51a4376SLisandro Dalcin for (k = 0; k < bs; k++) { 1197b51a4376SLisandro Dalcin for (jb = B->i[i]; jb < B->i[i + 1]; jb++) { 1198b51a4376SLisandro Dalcin if (garray[B->j[jb]] > cs / bs) break; 11999371c9d4SSatish Balay for (l = 0; l < bs; l++) matvals[cnt++] = B->a[bs * (bs * jb + l) + k]; 1200660746e0SBarry Smith } 1201b51a4376SLisandro Dalcin for (ja = A->i[i]; ja < A->i[i + 1]; ja++) 12029371c9d4SSatish Balay for (l = 0; l < bs; l++) matvals[cnt++] = A->a[bs * (bs * ja + l) + k]; 1203b51a4376SLisandro Dalcin for (; jb < B->i[i + 1]; jb++) 12049371c9d4SSatish Balay for (l = 0; l < bs; l++) matvals[cnt++] = B->a[bs * (bs * jb + l) + k]; 1205660746e0SBarry Smith } 1206b51a4376SLisandro Dalcin } 12079566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryWriteAll(viewer, matvals, nz, PETSC_DECIDE, PETSC_DECIDE, PETSC_SCALAR)); 12089566063dSJacob Faibussowitsch PetscCall(PetscFree(matvals)); 1209660746e0SBarry Smith 1210b51a4376SLisandro Dalcin /* write block size option to the viewer's .info file */ 12119566063dSJacob Faibussowitsch PetscCall(MatView_Binary_BlockSizes(mat, viewer)); 12123ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1213660746e0SBarry Smith } 1214660746e0SBarry Smith 1215d71ae5a4SJacob Faibussowitsch PetscErrorCode MatView_MPIBAIJ(Mat mat, PetscViewer viewer) 1216d71ae5a4SJacob Faibussowitsch { 1217ace3abfcSBarry Smith PetscBool iascii, isdraw, issocket, isbinary; 121857b952d6SSatish Balay 1219d64ed03dSBarry Smith PetscFunctionBegin; 12209566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &iascii)); 12219566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERDRAW, &isdraw)); 12229566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERSOCKET, &issocket)); 12239566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary)); 1224660746e0SBarry Smith if (iascii || isdraw || issocket) { 12259566063dSJacob Faibussowitsch PetscCall(MatView_MPIBAIJ_ASCIIorDraworSocket(mat, viewer)); 12261baa6e33SBarry Smith } else if (isbinary) PetscCall(MatView_MPIBAIJ_Binary(mat, viewer)); 12273ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 122857b952d6SSatish Balay } 122957b952d6SSatish Balay 1230d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMult_MPIBAIJ(Mat A, Vec xx, Vec yy) 1231d71ae5a4SJacob Faibussowitsch { 1232cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 1233b24ad042SBarry Smith PetscInt nt; 1234cee3aa6bSSatish Balay 1235d64ed03dSBarry Smith PetscFunctionBegin; 12369566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(xx, &nt)); 12375f80ce2aSJacob Faibussowitsch PetscCheck(nt == A->cmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Incompatible partition of A and xx"); 12389566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(yy, &nt)); 1239da81f932SPierre Jolivet PetscCheck(nt == A->rmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Incompatible partition of A and yy"); 12409566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(a->Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD)); 12419566063dSJacob Faibussowitsch PetscCall((*a->A->ops->mult)(a->A, xx, yy)); 12429566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(a->Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD)); 12439566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multadd)(a->B, a->lvec, yy, yy)); 12443ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1245cee3aa6bSSatish Balay } 1246cee3aa6bSSatish Balay 1247d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMultAdd_MPIBAIJ(Mat A, Vec xx, Vec yy, Vec zz) 1248d71ae5a4SJacob Faibussowitsch { 1249cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 1250d64ed03dSBarry Smith 1251d64ed03dSBarry Smith PetscFunctionBegin; 12529566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(a->Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD)); 12539566063dSJacob Faibussowitsch PetscCall((*a->A->ops->multadd)(a->A, xx, yy, zz)); 12549566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(a->Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD)); 12559566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multadd)(a->B, a->lvec, zz, zz)); 12563ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1257cee3aa6bSSatish Balay } 1258cee3aa6bSSatish Balay 1259d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMultTranspose_MPIBAIJ(Mat A, Vec xx, Vec yy) 1260d71ae5a4SJacob Faibussowitsch { 1261cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 1262cee3aa6bSSatish Balay 1263d64ed03dSBarry Smith PetscFunctionBegin; 1264cee3aa6bSSatish Balay /* do nondiagonal part */ 12659566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multtranspose)(a->B, xx, a->lvec)); 1266cee3aa6bSSatish Balay /* do local part */ 12679566063dSJacob Faibussowitsch PetscCall((*a->A->ops->multtranspose)(a->A, xx, yy)); 1268e4a140f6SJunchao Zhang /* add partial results together */ 12699566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(a->Mvctx, a->lvec, yy, ADD_VALUES, SCATTER_REVERSE)); 12709566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(a->Mvctx, a->lvec, yy, ADD_VALUES, SCATTER_REVERSE)); 12713ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1272cee3aa6bSSatish Balay } 1273cee3aa6bSSatish Balay 1274d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMultTransposeAdd_MPIBAIJ(Mat A, Vec xx, Vec yy, Vec zz) 1275d71ae5a4SJacob Faibussowitsch { 1276cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 1277cee3aa6bSSatish Balay 1278d64ed03dSBarry Smith PetscFunctionBegin; 1279cee3aa6bSSatish Balay /* do nondiagonal part */ 12809566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multtranspose)(a->B, xx, a->lvec)); 1281cee3aa6bSSatish Balay /* do local part */ 12829566063dSJacob Faibussowitsch PetscCall((*a->A->ops->multtransposeadd)(a->A, xx, yy, zz)); 1283e4a140f6SJunchao Zhang /* add partial results together */ 12849566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(a->Mvctx, a->lvec, zz, ADD_VALUES, SCATTER_REVERSE)); 12859566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(a->Mvctx, a->lvec, zz, ADD_VALUES, SCATTER_REVERSE)); 12863ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1287cee3aa6bSSatish Balay } 1288cee3aa6bSSatish Balay 1289cee3aa6bSSatish Balay /* 1290cee3aa6bSSatish Balay This only works correctly for square matrices where the subblock A->A is the 1291cee3aa6bSSatish Balay diagonal block 1292cee3aa6bSSatish Balay */ 1293d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetDiagonal_MPIBAIJ(Mat A, Vec v) 1294d71ae5a4SJacob Faibussowitsch { 1295d64ed03dSBarry Smith PetscFunctionBegin; 12965f80ce2aSJacob Faibussowitsch PetscCheck(A->rmap->N == A->cmap->N, PETSC_COMM_SELF, PETSC_ERR_SUP, "Supports only square matrix where A->A is diag block"); 12979566063dSJacob Faibussowitsch PetscCall(MatGetDiagonal(((Mat_MPIBAIJ *)A->data)->A, v)); 12983ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1299cee3aa6bSSatish Balay } 1300cee3aa6bSSatish Balay 1301d71ae5a4SJacob Faibussowitsch PetscErrorCode MatScale_MPIBAIJ(Mat A, PetscScalar aa) 1302d71ae5a4SJacob Faibussowitsch { 1303cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 1304d64ed03dSBarry Smith 1305d64ed03dSBarry Smith PetscFunctionBegin; 13069566063dSJacob Faibussowitsch PetscCall(MatScale(a->A, aa)); 13079566063dSJacob Faibussowitsch PetscCall(MatScale(a->B, aa)); 13083ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1309cee3aa6bSSatish Balay } 1310026e39d0SSatish Balay 1311d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetRow_MPIBAIJ(Mat matin, PetscInt row, PetscInt *nz, PetscInt **idx, PetscScalar **v) 1312d71ae5a4SJacob Faibussowitsch { 1313acdf5bf4SSatish Balay Mat_MPIBAIJ *mat = (Mat_MPIBAIJ *)matin->data; 131487828ca2SBarry Smith PetscScalar *vworkA, *vworkB, **pvA, **pvB, *v_p; 1315d0f46423SBarry Smith PetscInt bs = matin->rmap->bs, bs2 = mat->bs2, i, *cworkA, *cworkB, **pcA, **pcB; 1316d0f46423SBarry Smith PetscInt nztot, nzA, nzB, lrow, brstart = matin->rmap->rstart, brend = matin->rmap->rend; 1317899cda47SBarry Smith PetscInt *cmap, *idx_p, cstart = mat->cstartbs; 1318acdf5bf4SSatish Balay 1319d64ed03dSBarry Smith PetscFunctionBegin; 13205f80ce2aSJacob Faibussowitsch PetscCheck(row >= brstart && row < brend, PETSC_COMM_SELF, PETSC_ERR_SUP, "Only local rows"); 13215f80ce2aSJacob Faibussowitsch PetscCheck(!mat->getrowactive, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Already active"); 1322acdf5bf4SSatish Balay mat->getrowactive = PETSC_TRUE; 1323acdf5bf4SSatish Balay 1324acdf5bf4SSatish Balay if (!mat->rowvalues && (idx || v)) { 1325acdf5bf4SSatish Balay /* 1326acdf5bf4SSatish Balay allocate enough space to hold information from the longest row. 1327acdf5bf4SSatish Balay */ 1328acdf5bf4SSatish Balay Mat_SeqBAIJ *Aa = (Mat_SeqBAIJ *)mat->A->data, *Ba = (Mat_SeqBAIJ *)mat->B->data; 1329b24ad042SBarry Smith PetscInt max = 1, mbs = mat->mbs, tmp; 1330bd16c2feSSatish Balay for (i = 0; i < mbs; i++) { 1331acdf5bf4SSatish Balay tmp = Aa->i[i + 1] - Aa->i[i] + Ba->i[i + 1] - Ba->i[i]; 133226fbe8dcSKarl Rupp if (max < tmp) max = tmp; 1333acdf5bf4SSatish Balay } 13349566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(max * bs2, &mat->rowvalues, max * bs2, &mat->rowindices)); 1335acdf5bf4SSatish Balay } 1336d9d09a02SSatish Balay lrow = row - brstart; 1337acdf5bf4SSatish Balay 13389371c9d4SSatish Balay pvA = &vworkA; 13399371c9d4SSatish Balay pcA = &cworkA; 13409371c9d4SSatish Balay pvB = &vworkB; 13419371c9d4SSatish Balay pcB = &cworkB; 13429371c9d4SSatish Balay if (!v) { 13439371c9d4SSatish Balay pvA = NULL; 13449371c9d4SSatish Balay pvB = NULL; 13459371c9d4SSatish Balay } 13469371c9d4SSatish Balay if (!idx) { 13479371c9d4SSatish Balay pcA = NULL; 13489371c9d4SSatish Balay if (!v) pcB = NULL; 13499371c9d4SSatish Balay } 13509566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->getrow)(mat->A, lrow, &nzA, pcA, pvA)); 13519566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->getrow)(mat->B, lrow, &nzB, pcB, pvB)); 1352acdf5bf4SSatish Balay nztot = nzA + nzB; 1353acdf5bf4SSatish Balay 1354acdf5bf4SSatish Balay cmap = mat->garray; 1355acdf5bf4SSatish Balay if (v || idx) { 1356acdf5bf4SSatish Balay if (nztot) { 1357acdf5bf4SSatish Balay /* Sort by increasing column numbers, assuming A and B already sorted */ 1358b24ad042SBarry Smith PetscInt imark = -1; 1359acdf5bf4SSatish Balay if (v) { 1360acdf5bf4SSatish Balay *v = v_p = mat->rowvalues; 1361acdf5bf4SSatish Balay for (i = 0; i < nzB; i++) { 1362d9d09a02SSatish Balay if (cmap[cworkB[i] / bs] < cstart) v_p[i] = vworkB[i]; 1363acdf5bf4SSatish Balay else break; 1364acdf5bf4SSatish Balay } 1365acdf5bf4SSatish Balay imark = i; 1366acdf5bf4SSatish Balay for (i = 0; i < nzA; i++) v_p[imark + i] = vworkA[i]; 1367acdf5bf4SSatish Balay for (i = imark; i < nzB; i++) v_p[nzA + i] = vworkB[i]; 1368acdf5bf4SSatish Balay } 1369acdf5bf4SSatish Balay if (idx) { 1370acdf5bf4SSatish Balay *idx = idx_p = mat->rowindices; 1371acdf5bf4SSatish Balay if (imark > -1) { 1372ad540459SPierre Jolivet for (i = 0; i < imark; i++) idx_p[i] = cmap[cworkB[i] / bs] * bs + cworkB[i] % bs; 1373acdf5bf4SSatish Balay } else { 1374acdf5bf4SSatish Balay for (i = 0; i < nzB; i++) { 137526fbe8dcSKarl Rupp if (cmap[cworkB[i] / bs] < cstart) idx_p[i] = cmap[cworkB[i] / bs] * bs + cworkB[i] % bs; 1376acdf5bf4SSatish Balay else break; 1377acdf5bf4SSatish Balay } 1378acdf5bf4SSatish Balay imark = i; 1379acdf5bf4SSatish Balay } 1380d9d09a02SSatish Balay for (i = 0; i < nzA; i++) idx_p[imark + i] = cstart * bs + cworkA[i]; 1381d9d09a02SSatish Balay for (i = imark; i < nzB; i++) idx_p[nzA + i] = cmap[cworkB[i] / bs] * bs + cworkB[i] % bs; 1382acdf5bf4SSatish Balay } 1383d64ed03dSBarry Smith } else { 1384f4259b30SLisandro Dalcin if (idx) *idx = NULL; 1385f4259b30SLisandro Dalcin if (v) *v = NULL; 1386d212a18eSSatish Balay } 1387acdf5bf4SSatish Balay } 1388acdf5bf4SSatish Balay *nz = nztot; 13899566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->restorerow)(mat->A, lrow, &nzA, pcA, pvA)); 13909566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->restorerow)(mat->B, lrow, &nzB, pcB, pvB)); 13913ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1392acdf5bf4SSatish Balay } 1393acdf5bf4SSatish Balay 1394d71ae5a4SJacob Faibussowitsch PetscErrorCode MatRestoreRow_MPIBAIJ(Mat mat, PetscInt row, PetscInt *nz, PetscInt **idx, PetscScalar **v) 1395d71ae5a4SJacob Faibussowitsch { 1396acdf5bf4SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 1397d64ed03dSBarry Smith 1398d64ed03dSBarry Smith PetscFunctionBegin; 13995f80ce2aSJacob Faibussowitsch PetscCheck(baij->getrowactive, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "MatGetRow not called"); 1400acdf5bf4SSatish Balay baij->getrowactive = PETSC_FALSE; 14013ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1402acdf5bf4SSatish Balay } 1403acdf5bf4SSatish Balay 1404d71ae5a4SJacob Faibussowitsch PetscErrorCode MatZeroEntries_MPIBAIJ(Mat A) 1405d71ae5a4SJacob Faibussowitsch { 140658667388SSatish Balay Mat_MPIBAIJ *l = (Mat_MPIBAIJ *)A->data; 1407d64ed03dSBarry Smith 1408d64ed03dSBarry Smith PetscFunctionBegin; 14099566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(l->A)); 14109566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(l->B)); 14113ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 141258667388SSatish Balay } 14130ac07820SSatish Balay 1414d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetInfo_MPIBAIJ(Mat matin, MatInfoType flag, MatInfo *info) 1415d71ae5a4SJacob Faibussowitsch { 14164e220ebcSLois Curfman McInnes Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)matin->data; 14174e220ebcSLois Curfman McInnes Mat A = a->A, B = a->B; 14183966268fSBarry Smith PetscLogDouble isend[5], irecv[5]; 14190ac07820SSatish Balay 1420d64ed03dSBarry Smith PetscFunctionBegin; 1421d0f46423SBarry Smith info->block_size = (PetscReal)matin->rmap->bs; 142226fbe8dcSKarl Rupp 14239566063dSJacob Faibussowitsch PetscCall(MatGetInfo(A, MAT_LOCAL, info)); 142426fbe8dcSKarl Rupp 14259371c9d4SSatish Balay isend[0] = info->nz_used; 14269371c9d4SSatish Balay isend[1] = info->nz_allocated; 14279371c9d4SSatish Balay isend[2] = info->nz_unneeded; 14289371c9d4SSatish Balay isend[3] = info->memory; 14299371c9d4SSatish Balay isend[4] = info->mallocs; 143026fbe8dcSKarl Rupp 14319566063dSJacob Faibussowitsch PetscCall(MatGetInfo(B, MAT_LOCAL, info)); 143226fbe8dcSKarl Rupp 14339371c9d4SSatish Balay isend[0] += info->nz_used; 14349371c9d4SSatish Balay isend[1] += info->nz_allocated; 14359371c9d4SSatish Balay isend[2] += info->nz_unneeded; 14369371c9d4SSatish Balay isend[3] += info->memory; 14379371c9d4SSatish Balay isend[4] += info->mallocs; 143826fbe8dcSKarl Rupp 14390ac07820SSatish Balay if (flag == MAT_LOCAL) { 14404e220ebcSLois Curfman McInnes info->nz_used = isend[0]; 14414e220ebcSLois Curfman McInnes info->nz_allocated = isend[1]; 14424e220ebcSLois Curfman McInnes info->nz_unneeded = isend[2]; 14434e220ebcSLois Curfman McInnes info->memory = isend[3]; 14444e220ebcSLois Curfman McInnes info->mallocs = isend[4]; 14450ac07820SSatish Balay } else if (flag == MAT_GLOBAL_MAX) { 14461c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(isend, irecv, 5, MPIU_PETSCLOGDOUBLE, MPI_MAX, PetscObjectComm((PetscObject)matin))); 144726fbe8dcSKarl Rupp 14484e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 14494e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 14504e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 14514e220ebcSLois Curfman McInnes info->memory = irecv[3]; 14524e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 14530ac07820SSatish Balay } else if (flag == MAT_GLOBAL_SUM) { 14541c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(isend, irecv, 5, MPIU_PETSCLOGDOUBLE, MPI_SUM, PetscObjectComm((PetscObject)matin))); 145526fbe8dcSKarl Rupp 14564e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 14574e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 14584e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 14594e220ebcSLois Curfman McInnes info->memory = irecv[3]; 14604e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 146198921bdaSJacob Faibussowitsch } else SETERRQ(PetscObjectComm((PetscObject)matin), PETSC_ERR_ARG_WRONG, "Unknown MatInfoType argument %d", (int)flag); 14624e220ebcSLois Curfman McInnes info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */ 14634e220ebcSLois Curfman McInnes info->fill_ratio_needed = 0; 14644e220ebcSLois Curfman McInnes info->factor_mallocs = 0; 14653ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 14660ac07820SSatish Balay } 14670ac07820SSatish Balay 1468d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetOption_MPIBAIJ(Mat A, MatOption op, PetscBool flg) 1469d71ae5a4SJacob Faibussowitsch { 147058667388SSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 147158667388SSatish Balay 1472d64ed03dSBarry Smith PetscFunctionBegin; 147312c028f9SKris Buschelman switch (op) { 1474512a5fc5SBarry Smith case MAT_NEW_NONZERO_LOCATIONS: 147512c028f9SKris Buschelman case MAT_NEW_NONZERO_ALLOCATION_ERR: 147628b2fa4aSMatthew Knepley case MAT_UNUSED_NONZERO_LOCATION_ERR: 1477a9817697SBarry Smith case MAT_KEEP_NONZERO_PATTERN: 147812c028f9SKris Buschelman case MAT_NEW_NONZERO_LOCATION_ERR: 147943674050SBarry Smith MatCheckPreallocated(A, 1); 14809566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->A, op, flg)); 14819566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->B, op, flg)); 148212c028f9SKris Buschelman break; 148312c028f9SKris Buschelman case MAT_ROW_ORIENTED: 148443674050SBarry Smith MatCheckPreallocated(A, 1); 14854e0d8c25SBarry Smith a->roworiented = flg; 148626fbe8dcSKarl Rupp 14879566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->A, op, flg)); 14889566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->B, op, flg)); 148912c028f9SKris Buschelman break; 14908c78258cSHong Zhang case MAT_FORCE_DIAGONAL_ENTRIES: 1491d71ae5a4SJacob Faibussowitsch case MAT_SORTED_FULL: 1492d71ae5a4SJacob Faibussowitsch PetscCall(PetscInfo(A, "Option %s ignored\n", MatOptions[op])); 1493d71ae5a4SJacob Faibussowitsch break; 1494d71ae5a4SJacob Faibussowitsch case MAT_IGNORE_OFF_PROC_ENTRIES: 1495d71ae5a4SJacob Faibussowitsch a->donotstash = flg; 1496d71ae5a4SJacob Faibussowitsch break; 149712c028f9SKris Buschelman case MAT_USE_HASH_TABLE: 14984e0d8c25SBarry Smith a->ht_flag = flg; 1499abf3b562SBarry Smith a->ht_fact = 1.39; 150012c028f9SKris Buschelman break; 150177e54ba9SKris Buschelman case MAT_SYMMETRIC: 150277e54ba9SKris Buschelman case MAT_STRUCTURALLY_SYMMETRIC: 15032188ac68SBarry Smith case MAT_HERMITIAN: 1504c10200c1SHong Zhang case MAT_SUBMAT_SINGLEIS: 15052188ac68SBarry Smith case MAT_SYMMETRY_ETERNAL: 1506b94d7dedSBarry Smith case MAT_STRUCTURAL_SYMMETRY_ETERNAL: 1507b94d7dedSBarry Smith case MAT_SPD_ETERNAL: 1508b94d7dedSBarry Smith /* if the diagonal matrix is square it inherits some of the properties above */ 150977e54ba9SKris Buschelman break; 1510d71ae5a4SJacob Faibussowitsch default: 1511d71ae5a4SJacob Faibussowitsch SETERRQ(PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "unknown option %d", op); 1512d64ed03dSBarry Smith } 15133ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 151458667388SSatish Balay } 151558667388SSatish Balay 1516d71ae5a4SJacob Faibussowitsch PetscErrorCode MatTranspose_MPIBAIJ(Mat A, MatReuse reuse, Mat *matout) 1517d71ae5a4SJacob Faibussowitsch { 15180ac07820SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)A->data; 15190ac07820SSatish Balay Mat_SeqBAIJ *Aloc; 15200ac07820SSatish Balay Mat B; 1521d0f46423SBarry Smith PetscInt M = A->rmap->N, N = A->cmap->N, *ai, *aj, i, *rvals, j, k, col; 1522d0f46423SBarry Smith PetscInt bs = A->rmap->bs, mbs = baij->mbs; 15233eda8832SBarry Smith MatScalar *a; 15240ac07820SSatish Balay 1525d64ed03dSBarry Smith PetscFunctionBegin; 15267fb60732SBarry Smith if (reuse == MAT_REUSE_MATRIX) PetscCall(MatTransposeCheckNonzeroState_Private(A, *matout)); 1527cf37664fSBarry Smith if (reuse == MAT_INITIAL_MATRIX || reuse == MAT_INPLACE_MATRIX) { 15289566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)A), &B)); 15299566063dSJacob Faibussowitsch PetscCall(MatSetSizes(B, A->cmap->n, A->rmap->n, N, M)); 15309566063dSJacob Faibussowitsch PetscCall(MatSetType(B, ((PetscObject)A)->type_name)); 15312e72b8d9SBarry Smith /* Do not know preallocation information, but must set block size */ 15329566063dSJacob Faibussowitsch PetscCall(MatMPIBAIJSetPreallocation(B, A->rmap->bs, PETSC_DECIDE, NULL, PETSC_DECIDE, NULL)); 1533fc4dec0aSBarry Smith } else { 1534fc4dec0aSBarry Smith B = *matout; 1535fc4dec0aSBarry Smith } 15360ac07820SSatish Balay 15370ac07820SSatish Balay /* copy over the A part */ 15380ac07820SSatish Balay Aloc = (Mat_SeqBAIJ *)baij->A->data; 15399371c9d4SSatish Balay ai = Aloc->i; 15409371c9d4SSatish Balay aj = Aloc->j; 15419371c9d4SSatish Balay a = Aloc->a; 15429566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(bs, &rvals)); 15430ac07820SSatish Balay 15440ac07820SSatish Balay for (i = 0; i < mbs; i++) { 1545899cda47SBarry Smith rvals[0] = bs * (baij->rstartbs + i); 154626fbe8dcSKarl Rupp for (j = 1; j < bs; j++) rvals[j] = rvals[j - 1] + 1; 15470ac07820SSatish Balay for (j = ai[i]; j < ai[i + 1]; j++) { 1548899cda47SBarry Smith col = (baij->cstartbs + aj[j]) * bs; 15490ac07820SSatish Balay for (k = 0; k < bs; k++) { 15509566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPIBAIJ(B, 1, &col, bs, rvals, a, INSERT_VALUES)); 155126fbe8dcSKarl Rupp 15529371c9d4SSatish Balay col++; 15539371c9d4SSatish Balay a += bs; 15540ac07820SSatish Balay } 15550ac07820SSatish Balay } 15560ac07820SSatish Balay } 15570ac07820SSatish Balay /* copy over the B part */ 15580ac07820SSatish Balay Aloc = (Mat_SeqBAIJ *)baij->B->data; 15599371c9d4SSatish Balay ai = Aloc->i; 15609371c9d4SSatish Balay aj = Aloc->j; 15619371c9d4SSatish Balay a = Aloc->a; 15620ac07820SSatish Balay for (i = 0; i < mbs; i++) { 1563899cda47SBarry Smith rvals[0] = bs * (baij->rstartbs + i); 156426fbe8dcSKarl Rupp for (j = 1; j < bs; j++) rvals[j] = rvals[j - 1] + 1; 15650ac07820SSatish Balay for (j = ai[i]; j < ai[i + 1]; j++) { 15660ac07820SSatish Balay col = baij->garray[aj[j]] * bs; 15670ac07820SSatish Balay for (k = 0; k < bs; k++) { 15689566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPIBAIJ(B, 1, &col, bs, rvals, a, INSERT_VALUES)); 156926fbe8dcSKarl Rupp col++; 157026fbe8dcSKarl Rupp a += bs; 15710ac07820SSatish Balay } 15720ac07820SSatish Balay } 15730ac07820SSatish Balay } 15749566063dSJacob Faibussowitsch PetscCall(PetscFree(rvals)); 15759566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY)); 15769566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY)); 15770ac07820SSatish Balay 1578cf37664fSBarry Smith if (reuse == MAT_INITIAL_MATRIX || reuse == MAT_REUSE_MATRIX) *matout = B; 157948a46eb9SPierre Jolivet else PetscCall(MatHeaderMerge(A, &B)); 15803ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 15810ac07820SSatish Balay } 15820e95ebc0SSatish Balay 1583d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDiagonalScale_MPIBAIJ(Mat mat, Vec ll, Vec rr) 1584d71ae5a4SJacob Faibussowitsch { 158536c4a09eSSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 158636c4a09eSSatish Balay Mat a = baij->A, b = baij->B; 1587b24ad042SBarry Smith PetscInt s1, s2, s3; 15880e95ebc0SSatish Balay 1589d64ed03dSBarry Smith PetscFunctionBegin; 15909566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(mat, &s2, &s3)); 159136c4a09eSSatish Balay if (rr) { 15929566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(rr, &s1)); 15935f80ce2aSJacob Faibussowitsch PetscCheck(s1 == s3, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "right vector non-conforming local size"); 159436c4a09eSSatish Balay /* Overlap communication with computation. */ 15959566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(baij->Mvctx, rr, baij->lvec, INSERT_VALUES, SCATTER_FORWARD)); 159636c4a09eSSatish Balay } 15970e95ebc0SSatish Balay if (ll) { 15989566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(ll, &s1)); 15995f80ce2aSJacob Faibussowitsch PetscCheck(s1 == s2, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "left vector non-conforming local size"); 1600dbbe0bcdSBarry Smith PetscUseTypeMethod(b, diagonalscale, ll, NULL); 16010e95ebc0SSatish Balay } 160236c4a09eSSatish Balay /* scale the diagonal block */ 1603dbbe0bcdSBarry Smith PetscUseTypeMethod(a, diagonalscale, ll, rr); 160436c4a09eSSatish Balay 160536c4a09eSSatish Balay if (rr) { 160636c4a09eSSatish Balay /* Do a scatter end and then right scale the off-diagonal block */ 16079566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(baij->Mvctx, rr, baij->lvec, INSERT_VALUES, SCATTER_FORWARD)); 1608dbbe0bcdSBarry Smith PetscUseTypeMethod(b, diagonalscale, NULL, baij->lvec); 160936c4a09eSSatish Balay } 16103ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 16110e95ebc0SSatish Balay } 16120e95ebc0SSatish Balay 1613d71ae5a4SJacob Faibussowitsch PetscErrorCode MatZeroRows_MPIBAIJ(Mat A, PetscInt N, const PetscInt rows[], PetscScalar diag, Vec x, Vec b) 1614d71ae5a4SJacob Faibussowitsch { 16150ac07820SSatish Balay Mat_MPIBAIJ *l = (Mat_MPIBAIJ *)A->data; 161665a92638SMatthew G. Knepley PetscInt *lrows; 16176e520ac8SStefano Zampini PetscInt r, len; 161894342113SStefano Zampini PetscBool cong; 16190ac07820SSatish Balay 1620d64ed03dSBarry Smith PetscFunctionBegin; 16216e520ac8SStefano Zampini /* get locally owned rows */ 16229566063dSJacob Faibussowitsch PetscCall(MatZeroRowsMapLocal_Private(A, N, rows, &len, &lrows)); 162397b48c8fSBarry Smith /* fix right hand side if needed */ 162497b48c8fSBarry Smith if (x && b) { 162565a92638SMatthew G. Knepley const PetscScalar *xx; 162665a92638SMatthew G. Knepley PetscScalar *bb; 162765a92638SMatthew G. Knepley 16289566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(x, &xx)); 16299566063dSJacob Faibussowitsch PetscCall(VecGetArray(b, &bb)); 163065a92638SMatthew G. Knepley for (r = 0; r < len; ++r) bb[lrows[r]] = diag * xx[lrows[r]]; 16319566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(x, &xx)); 16329566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(b, &bb)); 163397b48c8fSBarry Smith } 163497b48c8fSBarry Smith 16350ac07820SSatish Balay /* actually zap the local rows */ 163672dacd9aSBarry Smith /* 163772dacd9aSBarry Smith Zero the required rows. If the "diagonal block" of the matrix 1638a8c7a070SBarry Smith is square and the user wishes to set the diagonal we use separate 163972dacd9aSBarry Smith code so that MatSetValues() is not called for each diagonal allocating 164072dacd9aSBarry Smith new memory, thus calling lots of mallocs and slowing things down. 164172dacd9aSBarry Smith 164272dacd9aSBarry Smith */ 16439c957beeSSatish Balay /* must zero l->B before l->A because the (diag) case below may put values into l->B*/ 16449566063dSJacob Faibussowitsch PetscCall(MatZeroRows_SeqBAIJ(l->B, len, lrows, 0.0, NULL, NULL)); 16459566063dSJacob Faibussowitsch PetscCall(MatHasCongruentLayouts(A, &cong)); 164694342113SStefano Zampini if ((diag != 0.0) && cong) { 16479566063dSJacob Faibussowitsch PetscCall(MatZeroRows_SeqBAIJ(l->A, len, lrows, diag, NULL, NULL)); 1648f4df32b1SMatthew Knepley } else if (diag != 0.0) { 16499566063dSJacob Faibussowitsch PetscCall(MatZeroRows_SeqBAIJ(l->A, len, lrows, 0.0, NULL, NULL)); 16505f80ce2aSJacob Faibussowitsch PetscCheck(!((Mat_SeqBAIJ *)l->A->data)->nonew, PETSC_COMM_SELF, PETSC_ERR_SUP, "MatZeroRows() on rectangular matrices cannot be used with the Mat options \n\ 1651512a5fc5SBarry Smith MAT_NEW_NONZERO_LOCATIONS,MAT_NEW_NONZERO_LOCATION_ERR,MAT_NEW_NONZERO_ALLOCATION_ERR"); 165265a92638SMatthew G. Knepley for (r = 0; r < len; ++r) { 165365a92638SMatthew G. Knepley const PetscInt row = lrows[r] + A->rmap->rstart; 16549566063dSJacob Faibussowitsch PetscCall(MatSetValues(A, 1, &row, 1, &row, &diag, INSERT_VALUES)); 1655a07cd24cSSatish Balay } 16569566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(A, MAT_FINAL_ASSEMBLY)); 16579566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(A, MAT_FINAL_ASSEMBLY)); 16589c957beeSSatish Balay } else { 16599566063dSJacob Faibussowitsch PetscCall(MatZeroRows_SeqBAIJ(l->A, len, lrows, 0.0, NULL, NULL)); 1660a07cd24cSSatish Balay } 16619566063dSJacob Faibussowitsch PetscCall(PetscFree(lrows)); 16624f9cfa9eSBarry Smith 16634f9cfa9eSBarry Smith /* only change matrix nonzero state if pattern was allowed to be changed */ 16644f9cfa9eSBarry Smith if (!((Mat_SeqBAIJ *)(l->A->data))->keepnonzeropattern) { 1665e56f5c9eSBarry Smith PetscObjectState state = l->A->nonzerostate + l->B->nonzerostate; 16661c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&state, &A->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)A))); 1667e56f5c9eSBarry Smith } 16683ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 16690ac07820SSatish Balay } 167072dacd9aSBarry Smith 1671d71ae5a4SJacob Faibussowitsch PetscErrorCode MatZeroRowsColumns_MPIBAIJ(Mat A, PetscInt N, const PetscInt rows[], PetscScalar diag, Vec x, Vec b) 1672d71ae5a4SJacob Faibussowitsch { 16736f0a72daSMatthew G. Knepley Mat_MPIBAIJ *l = (Mat_MPIBAIJ *)A->data; 1674131c27b5Sprj- PetscMPIInt n = A->rmap->n, p = 0; 1675131c27b5Sprj- PetscInt i, j, k, r, len = 0, row, col, count; 16766f0a72daSMatthew G. Knepley PetscInt *lrows, *owners = A->rmap->range; 16776f0a72daSMatthew G. Knepley PetscSFNode *rrows; 16786f0a72daSMatthew G. Knepley PetscSF sf; 16796f0a72daSMatthew G. Knepley const PetscScalar *xx; 16806f0a72daSMatthew G. Knepley PetscScalar *bb, *mask; 16816f0a72daSMatthew G. Knepley Vec xmask, lmask; 16826f0a72daSMatthew G. Knepley Mat_SeqBAIJ *baij = (Mat_SeqBAIJ *)l->B->data; 16836f0a72daSMatthew G. Knepley PetscInt bs = A->rmap->bs, bs2 = baij->bs2; 16846f0a72daSMatthew G. Knepley PetscScalar *aa; 16856f0a72daSMatthew G. Knepley 16866f0a72daSMatthew G. Knepley PetscFunctionBegin; 16876f0a72daSMatthew G. Knepley /* Create SF where leaves are input rows and roots are owned rows */ 16889566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(n, &lrows)); 16896f0a72daSMatthew G. Knepley for (r = 0; r < n; ++r) lrows[r] = -1; 16909566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(N, &rrows)); 16916f0a72daSMatthew G. Knepley for (r = 0; r < N; ++r) { 16926f0a72daSMatthew G. Knepley const PetscInt idx = rows[r]; 16935f80ce2aSJacob Faibussowitsch PetscCheck(idx >= 0 && A->rmap->N > idx, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row %" PetscInt_FMT " out of range [0,%" PetscInt_FMT ")", idx, A->rmap->N); 16945ba17502SJed Brown if (idx < owners[p] || owners[p + 1] <= idx) { /* short-circuit the search if the last p owns this row too */ 16959566063dSJacob Faibussowitsch PetscCall(PetscLayoutFindOwner(A->rmap, idx, &p)); 16965ba17502SJed Brown } 16976f0a72daSMatthew G. Knepley rrows[r].rank = p; 16986f0a72daSMatthew G. Knepley rrows[r].index = rows[r] - owners[p]; 16996f0a72daSMatthew G. Knepley } 17009566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)A), &sf)); 17019566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(sf, n, N, NULL, PETSC_OWN_POINTER, rrows, PETSC_OWN_POINTER)); 17026f0a72daSMatthew G. Knepley /* Collect flags for rows to be zeroed */ 17039566063dSJacob Faibussowitsch PetscCall(PetscSFReduceBegin(sf, MPIU_INT, (PetscInt *)rows, lrows, MPI_LOR)); 17049566063dSJacob Faibussowitsch PetscCall(PetscSFReduceEnd(sf, MPIU_INT, (PetscInt *)rows, lrows, MPI_LOR)); 17059566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&sf)); 17066f0a72daSMatthew G. Knepley /* Compress and put in row numbers */ 17079371c9d4SSatish Balay for (r = 0; r < n; ++r) 17089371c9d4SSatish Balay if (lrows[r] >= 0) lrows[len++] = r; 17096f0a72daSMatthew G. Knepley /* zero diagonal part of matrix */ 17109566063dSJacob Faibussowitsch PetscCall(MatZeroRowsColumns(l->A, len, lrows, diag, x, b)); 17116f0a72daSMatthew G. Knepley /* handle off diagonal part of matrix */ 17129566063dSJacob Faibussowitsch PetscCall(MatCreateVecs(A, &xmask, NULL)); 17139566063dSJacob Faibussowitsch PetscCall(VecDuplicate(l->lvec, &lmask)); 17149566063dSJacob Faibussowitsch PetscCall(VecGetArray(xmask, &bb)); 17156f0a72daSMatthew G. Knepley for (i = 0; i < len; i++) bb[lrows[i]] = 1; 17169566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(xmask, &bb)); 17179566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(l->Mvctx, xmask, lmask, ADD_VALUES, SCATTER_FORWARD)); 17189566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(l->Mvctx, xmask, lmask, ADD_VALUES, SCATTER_FORWARD)); 17199566063dSJacob Faibussowitsch PetscCall(VecDestroy(&xmask)); 17206f0a72daSMatthew G. Knepley if (x) { 17219566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(l->Mvctx, x, l->lvec, INSERT_VALUES, SCATTER_FORWARD)); 17229566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(l->Mvctx, x, l->lvec, INSERT_VALUES, SCATTER_FORWARD)); 17239566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(l->lvec, &xx)); 17249566063dSJacob Faibussowitsch PetscCall(VecGetArray(b, &bb)); 17256f0a72daSMatthew G. Knepley } 17269566063dSJacob Faibussowitsch PetscCall(VecGetArray(lmask, &mask)); 17276f0a72daSMatthew G. Knepley /* remove zeroed rows of off diagonal matrix */ 17286f0a72daSMatthew G. Knepley for (i = 0; i < len; ++i) { 17296f0a72daSMatthew G. Knepley row = lrows[i]; 17306f0a72daSMatthew G. Knepley count = (baij->i[row / bs + 1] - baij->i[row / bs]) * bs; 17316f0a72daSMatthew G. Knepley aa = ((MatScalar *)(baij->a)) + baij->i[row / bs] * bs2 + (row % bs); 17326f0a72daSMatthew G. Knepley for (k = 0; k < count; ++k) { 17336f0a72daSMatthew G. Knepley aa[0] = 0.0; 17346f0a72daSMatthew G. Knepley aa += bs; 17356f0a72daSMatthew G. Knepley } 17366f0a72daSMatthew G. Knepley } 17376f0a72daSMatthew G. Knepley /* loop over all elements of off process part of matrix zeroing removed columns*/ 17386f0a72daSMatthew G. Knepley for (i = 0; i < l->B->rmap->N; ++i) { 17396f0a72daSMatthew G. Knepley row = i / bs; 17406f0a72daSMatthew G. Knepley for (j = baij->i[row]; j < baij->i[row + 1]; ++j) { 17416f0a72daSMatthew G. Knepley for (k = 0; k < bs; ++k) { 17426f0a72daSMatthew G. Knepley col = bs * baij->j[j] + k; 17436f0a72daSMatthew G. Knepley if (PetscAbsScalar(mask[col])) { 17446f0a72daSMatthew G. Knepley aa = ((MatScalar *)(baij->a)) + j * bs2 + (i % bs) + bs * k; 174589ae1891SBarry Smith if (x) bb[i] -= aa[0] * xx[col]; 17466f0a72daSMatthew G. Knepley aa[0] = 0.0; 17476f0a72daSMatthew G. Knepley } 17486f0a72daSMatthew G. Knepley } 17496f0a72daSMatthew G. Knepley } 17506f0a72daSMatthew G. Knepley } 17516f0a72daSMatthew G. Knepley if (x) { 17529566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(b, &bb)); 17539566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(l->lvec, &xx)); 17546f0a72daSMatthew G. Knepley } 17559566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(lmask, &mask)); 17569566063dSJacob Faibussowitsch PetscCall(VecDestroy(&lmask)); 17579566063dSJacob Faibussowitsch PetscCall(PetscFree(lrows)); 17584f9cfa9eSBarry Smith 17594f9cfa9eSBarry Smith /* only change matrix nonzero state if pattern was allowed to be changed */ 17604f9cfa9eSBarry Smith if (!((Mat_SeqBAIJ *)(l->A->data))->keepnonzeropattern) { 17614f9cfa9eSBarry Smith PetscObjectState state = l->A->nonzerostate + l->B->nonzerostate; 17621c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&state, &A->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)A))); 17634f9cfa9eSBarry Smith } 17643ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 17656f0a72daSMatthew G. Knepley } 17666f0a72daSMatthew G. Knepley 1767d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetUnfactored_MPIBAIJ(Mat A) 1768d71ae5a4SJacob Faibussowitsch { 1769bb5a7306SBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 1770d64ed03dSBarry Smith 1771d64ed03dSBarry Smith PetscFunctionBegin; 17729566063dSJacob Faibussowitsch PetscCall(MatSetUnfactored(a->A)); 17733ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1774bb5a7306SBarry Smith } 1775bb5a7306SBarry Smith 17766849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIBAIJ(Mat, MatDuplicateOption, Mat *); 17770ac07820SSatish Balay 1778d71ae5a4SJacob Faibussowitsch PetscErrorCode MatEqual_MPIBAIJ(Mat A, Mat B, PetscBool *flag) 1779d71ae5a4SJacob Faibussowitsch { 17807fc3c18eSBarry Smith Mat_MPIBAIJ *matB = (Mat_MPIBAIJ *)B->data, *matA = (Mat_MPIBAIJ *)A->data; 17817fc3c18eSBarry Smith Mat a, b, c, d; 1782ace3abfcSBarry Smith PetscBool flg; 17837fc3c18eSBarry Smith 17847fc3c18eSBarry Smith PetscFunctionBegin; 17859371c9d4SSatish Balay a = matA->A; 17869371c9d4SSatish Balay b = matA->B; 17879371c9d4SSatish Balay c = matB->A; 17889371c9d4SSatish Balay d = matB->B; 17897fc3c18eSBarry Smith 17909566063dSJacob Faibussowitsch PetscCall(MatEqual(a, c, &flg)); 179148a46eb9SPierre Jolivet if (flg) PetscCall(MatEqual(b, d, &flg)); 17921c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&flg, flag, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)A))); 17933ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 17947fc3c18eSBarry Smith } 17957fc3c18eSBarry Smith 1796d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCopy_MPIBAIJ(Mat A, Mat B, MatStructure str) 1797d71ae5a4SJacob Faibussowitsch { 17983c896bc6SHong Zhang Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 17993c896bc6SHong Zhang Mat_MPIBAIJ *b = (Mat_MPIBAIJ *)B->data; 18003c896bc6SHong Zhang 18013c896bc6SHong Zhang PetscFunctionBegin; 18023c896bc6SHong Zhang /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */ 18033c896bc6SHong Zhang if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) { 18049566063dSJacob Faibussowitsch PetscCall(MatCopy_Basic(A, B, str)); 18053c896bc6SHong Zhang } else { 18069566063dSJacob Faibussowitsch PetscCall(MatCopy(a->A, b->A, str)); 18079566063dSJacob Faibussowitsch PetscCall(MatCopy(a->B, b->B, str)); 18083c896bc6SHong Zhang } 18099566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)B)); 18103ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 18113c896bc6SHong Zhang } 1812273d9f13SBarry Smith 1813d71ae5a4SJacob Faibussowitsch PetscErrorCode MatAXPYGetPreallocation_MPIBAIJ(Mat Y, const PetscInt *yltog, Mat X, const PetscInt *xltog, PetscInt *nnz) 1814d71ae5a4SJacob Faibussowitsch { 1815001ddc4fSHong Zhang PetscInt bs = Y->rmap->bs, m = Y->rmap->N / bs; 18164de5dceeSHong Zhang Mat_SeqBAIJ *x = (Mat_SeqBAIJ *)X->data; 18174de5dceeSHong Zhang Mat_SeqBAIJ *y = (Mat_SeqBAIJ *)Y->data; 18184de5dceeSHong Zhang 18194de5dceeSHong Zhang PetscFunctionBegin; 18209566063dSJacob Faibussowitsch PetscCall(MatAXPYGetPreallocation_MPIX_private(m, x->i, x->j, xltog, y->i, y->j, yltog, nnz)); 18213ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 18224de5dceeSHong Zhang } 18234de5dceeSHong Zhang 1824d71ae5a4SJacob Faibussowitsch PetscErrorCode MatAXPY_MPIBAIJ(Mat Y, PetscScalar a, Mat X, MatStructure str) 1825d71ae5a4SJacob Faibussowitsch { 18264fe895cdSHong Zhang Mat_MPIBAIJ *xx = (Mat_MPIBAIJ *)X->data, *yy = (Mat_MPIBAIJ *)Y->data; 18274fe895cdSHong Zhang PetscBLASInt bnz, one = 1; 18284fe895cdSHong Zhang Mat_SeqBAIJ *x, *y; 1829b31f67cfSBarry Smith PetscInt bs2 = Y->rmap->bs * Y->rmap->bs; 18304fe895cdSHong Zhang 18314fe895cdSHong Zhang PetscFunctionBegin; 18324fe895cdSHong Zhang if (str == SAME_NONZERO_PATTERN) { 18334fe895cdSHong Zhang PetscScalar alpha = a; 18344fe895cdSHong Zhang x = (Mat_SeqBAIJ *)xx->A->data; 18354fe895cdSHong Zhang y = (Mat_SeqBAIJ *)yy->A->data; 18369566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(x->nz * bs2, &bnz)); 1837792fecdfSBarry Smith PetscCallBLAS("BLASaxpy", BLASaxpy_(&bnz, &alpha, x->a, &one, y->a, &one)); 18384fe895cdSHong Zhang x = (Mat_SeqBAIJ *)xx->B->data; 18394fe895cdSHong Zhang y = (Mat_SeqBAIJ *)yy->B->data; 18409566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(x->nz * bs2, &bnz)); 1841792fecdfSBarry Smith PetscCallBLAS("BLASaxpy", BLASaxpy_(&bnz, &alpha, x->a, &one, y->a, &one)); 18429566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)Y)); 1843ab784542SHong Zhang } else if (str == SUBSET_NONZERO_PATTERN) { /* nonzeros of X is a subset of Y's */ 18449566063dSJacob Faibussowitsch PetscCall(MatAXPY_Basic(Y, a, X, str)); 18454fe895cdSHong Zhang } else { 18464de5dceeSHong Zhang Mat B; 18474de5dceeSHong Zhang PetscInt *nnz_d, *nnz_o, bs = Y->rmap->bs; 18489566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(yy->A->rmap->N, &nnz_d)); 18499566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(yy->B->rmap->N, &nnz_o)); 18509566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)Y), &B)); 18519566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)B, ((PetscObject)Y)->name)); 18529566063dSJacob Faibussowitsch PetscCall(MatSetSizes(B, Y->rmap->n, Y->cmap->n, Y->rmap->N, Y->cmap->N)); 18539566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizesFromMats(B, Y, Y)); 18549566063dSJacob Faibussowitsch PetscCall(MatSetType(B, MATMPIBAIJ)); 18559566063dSJacob Faibussowitsch PetscCall(MatAXPYGetPreallocation_SeqBAIJ(yy->A, xx->A, nnz_d)); 18569566063dSJacob Faibussowitsch PetscCall(MatAXPYGetPreallocation_MPIBAIJ(yy->B, yy->garray, xx->B, xx->garray, nnz_o)); 18579566063dSJacob Faibussowitsch PetscCall(MatMPIBAIJSetPreallocation(B, bs, 0, nnz_d, 0, nnz_o)); 18584de5dceeSHong Zhang /* MatAXPY_BasicWithPreallocation() for BAIJ matrix is much slower than AIJ, even for bs=1 ! */ 18599566063dSJacob Faibussowitsch PetscCall(MatAXPY_BasicWithPreallocation(B, Y, a, X, str)); 18609566063dSJacob Faibussowitsch PetscCall(MatHeaderMerge(Y, &B)); 18619566063dSJacob Faibussowitsch PetscCall(PetscFree(nnz_d)); 18629566063dSJacob Faibussowitsch PetscCall(PetscFree(nnz_o)); 18634fe895cdSHong Zhang } 18643ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 18654fe895cdSHong Zhang } 18664fe895cdSHong Zhang 1867d71ae5a4SJacob Faibussowitsch PetscErrorCode MatConjugate_MPIBAIJ(Mat mat) 1868d71ae5a4SJacob Faibussowitsch { 18695f80ce2aSJacob Faibussowitsch PetscFunctionBegin; 18705f80ce2aSJacob Faibussowitsch if (PetscDefined(USE_COMPLEX)) { 18712726fb6dSPierre Jolivet Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)mat->data; 18722726fb6dSPierre Jolivet 18739566063dSJacob Faibussowitsch PetscCall(MatConjugate_SeqBAIJ(a->A)); 18749566063dSJacob Faibussowitsch PetscCall(MatConjugate_SeqBAIJ(a->B)); 18755f80ce2aSJacob Faibussowitsch } 18763ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 18772726fb6dSPierre Jolivet } 18782726fb6dSPierre Jolivet 1879d71ae5a4SJacob Faibussowitsch PetscErrorCode MatRealPart_MPIBAIJ(Mat A) 1880d71ae5a4SJacob Faibussowitsch { 188199cafbc1SBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 188299cafbc1SBarry Smith 188399cafbc1SBarry Smith PetscFunctionBegin; 18849566063dSJacob Faibussowitsch PetscCall(MatRealPart(a->A)); 18859566063dSJacob Faibussowitsch PetscCall(MatRealPart(a->B)); 18863ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 188799cafbc1SBarry Smith } 188899cafbc1SBarry Smith 1889d71ae5a4SJacob Faibussowitsch PetscErrorCode MatImaginaryPart_MPIBAIJ(Mat A) 1890d71ae5a4SJacob Faibussowitsch { 189199cafbc1SBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 189299cafbc1SBarry Smith 189399cafbc1SBarry Smith PetscFunctionBegin; 18949566063dSJacob Faibussowitsch PetscCall(MatImaginaryPart(a->A)); 18959566063dSJacob Faibussowitsch PetscCall(MatImaginaryPart(a->B)); 18963ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 189799cafbc1SBarry Smith } 189899cafbc1SBarry Smith 1899d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateSubMatrix_MPIBAIJ(Mat mat, IS isrow, IS iscol, MatReuse call, Mat *newmat) 1900d71ae5a4SJacob Faibussowitsch { 19014aa3045dSJed Brown IS iscol_local; 19024aa3045dSJed Brown PetscInt csize; 19034aa3045dSJed Brown 19044aa3045dSJed Brown PetscFunctionBegin; 19059566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol, &csize)); 1906b79d0421SJed Brown if (call == MAT_REUSE_MATRIX) { 19079566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*newmat, "ISAllGather", (PetscObject *)&iscol_local)); 19085f80ce2aSJacob Faibussowitsch PetscCheck(iscol_local, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Submatrix passed in was not used before, cannot reuse"); 1909b79d0421SJed Brown } else { 19109566063dSJacob Faibussowitsch PetscCall(ISAllGather(iscol, &iscol_local)); 1911b79d0421SJed Brown } 19129566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrix_MPIBAIJ_Private(mat, isrow, iscol_local, csize, call, newmat)); 1913b79d0421SJed Brown if (call == MAT_INITIAL_MATRIX) { 19149566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)*newmat, "ISAllGather", (PetscObject)iscol_local)); 19159566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscol_local)); 1916b79d0421SJed Brown } 19173ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 19184aa3045dSJed Brown } 191917df9f7cSHong Zhang 192082094794SBarry Smith /* 192182094794SBarry Smith Not great since it makes two copies of the submatrix, first an SeqBAIJ 192282094794SBarry Smith in local and then by concatenating the local matrices the end result. 19237dae84e0SHong Zhang Writing it directly would be much like MatCreateSubMatrices_MPIBAIJ(). 19248f46ffcaSHong Zhang This routine is used for BAIJ and SBAIJ matrices (unfortunate dependency). 192582094794SBarry Smith */ 1926d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateSubMatrix_MPIBAIJ_Private(Mat mat, IS isrow, IS iscol, PetscInt csize, MatReuse call, Mat *newmat) 1927d71ae5a4SJacob Faibussowitsch { 192882094794SBarry Smith PetscMPIInt rank, size; 192982094794SBarry Smith PetscInt i, m, n, rstart, row, rend, nz, *cwork, j, bs; 1930c9ffca76SHong Zhang PetscInt *ii, *jj, nlocal, *dlens, *olens, dlen, olen, jend, mglobal; 193129dcf524SDmitry Karpeev Mat M, Mreuse; 193282094794SBarry Smith MatScalar *vwork, *aa; 1933ce94432eSBarry Smith MPI_Comm comm; 193429dcf524SDmitry Karpeev IS isrow_new, iscol_new; 193582094794SBarry Smith Mat_SeqBAIJ *aij; 193682094794SBarry Smith 193782094794SBarry Smith PetscFunctionBegin; 19389566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)mat, &comm)); 19399566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 19409566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 194129dcf524SDmitry Karpeev /* The compression and expansion should be avoided. Doesn't point 194229dcf524SDmitry Karpeev out errors, might change the indices, hence buggey */ 19439566063dSJacob Faibussowitsch PetscCall(ISCompressIndicesGeneral(mat->rmap->N, mat->rmap->n, mat->rmap->bs, 1, &isrow, &isrow_new)); 1944864bd19bSPierre Jolivet if (isrow == iscol) { 1945864bd19bSPierre Jolivet iscol_new = isrow_new; 1946864bd19bSPierre Jolivet PetscCall(PetscObjectReference((PetscObject)iscol_new)); 1947864bd19bSPierre Jolivet } else PetscCall(ISCompressIndicesGeneral(mat->cmap->N, mat->cmap->n, mat->cmap->bs, 1, &iscol, &iscol_new)); 194882094794SBarry Smith 194982094794SBarry Smith if (call == MAT_REUSE_MATRIX) { 19509566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*newmat, "SubMatrix", (PetscObject *)&Mreuse)); 19515f80ce2aSJacob Faibussowitsch PetscCheck(Mreuse, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Submatrix passed in was not used before, cannot reuse"); 19529566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrices_MPIBAIJ_local(mat, 1, &isrow_new, &iscol_new, MAT_REUSE_MATRIX, &Mreuse)); 195382094794SBarry Smith } else { 19549566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrices_MPIBAIJ_local(mat, 1, &isrow_new, &iscol_new, MAT_INITIAL_MATRIX, &Mreuse)); 195582094794SBarry Smith } 19569566063dSJacob Faibussowitsch PetscCall(ISDestroy(&isrow_new)); 19579566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscol_new)); 195882094794SBarry Smith /* 195982094794SBarry Smith m - number of local rows 196082094794SBarry Smith n - number of columns (same on all processors) 196182094794SBarry Smith rstart - first row in new global matrix generated 196282094794SBarry Smith */ 19639566063dSJacob Faibussowitsch PetscCall(MatGetBlockSize(mat, &bs)); 19649566063dSJacob Faibussowitsch PetscCall(MatGetSize(Mreuse, &m, &n)); 196582094794SBarry Smith m = m / bs; 196682094794SBarry Smith n = n / bs; 196782094794SBarry Smith 196882094794SBarry Smith if (call == MAT_INITIAL_MATRIX) { 196982094794SBarry Smith aij = (Mat_SeqBAIJ *)(Mreuse)->data; 197082094794SBarry Smith ii = aij->i; 197182094794SBarry Smith jj = aij->j; 197282094794SBarry Smith 197382094794SBarry Smith /* 197482094794SBarry Smith Determine the number of non-zeros in the diagonal and off-diagonal 197582094794SBarry Smith portions of the matrix in order to do correct preallocation 197682094794SBarry Smith */ 197782094794SBarry Smith 197882094794SBarry Smith /* first get start and end of "diagonal" columns */ 197982094794SBarry Smith if (csize == PETSC_DECIDE) { 19809566063dSJacob Faibussowitsch PetscCall(ISGetSize(isrow, &mglobal)); 198182094794SBarry Smith if (mglobal == n * bs) { /* square matrix */ 198282094794SBarry Smith nlocal = m; 198382094794SBarry Smith } else { 198482094794SBarry Smith nlocal = n / size + ((n % size) > rank); 198582094794SBarry Smith } 198682094794SBarry Smith } else { 198782094794SBarry Smith nlocal = csize / bs; 198882094794SBarry Smith } 19899566063dSJacob Faibussowitsch PetscCallMPI(MPI_Scan(&nlocal, &rend, 1, MPIU_INT, MPI_SUM, comm)); 199082094794SBarry Smith rstart = rend - nlocal; 1991aed4548fSBarry Smith PetscCheck(rank != size - 1 || rend == n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Local column sizes %" PetscInt_FMT " do not add up to total number of columns %" PetscInt_FMT, rend, n); 199282094794SBarry Smith 199382094794SBarry Smith /* next, compute all the lengths */ 19949566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(m + 1, &dlens, m + 1, &olens)); 199582094794SBarry Smith for (i = 0; i < m; i++) { 199682094794SBarry Smith jend = ii[i + 1] - ii[i]; 199782094794SBarry Smith olen = 0; 199882094794SBarry Smith dlen = 0; 199982094794SBarry Smith for (j = 0; j < jend; j++) { 200082094794SBarry Smith if (*jj < rstart || *jj >= rend) olen++; 200182094794SBarry Smith else dlen++; 200282094794SBarry Smith jj++; 200382094794SBarry Smith } 200482094794SBarry Smith olens[i] = olen; 200582094794SBarry Smith dlens[i] = dlen; 200682094794SBarry Smith } 20079566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, &M)); 20089566063dSJacob Faibussowitsch PetscCall(MatSetSizes(M, bs * m, bs * nlocal, PETSC_DECIDE, bs * n)); 20099566063dSJacob Faibussowitsch PetscCall(MatSetType(M, ((PetscObject)mat)->type_name)); 20109566063dSJacob Faibussowitsch PetscCall(MatMPIBAIJSetPreallocation(M, bs, 0, dlens, 0, olens)); 20119566063dSJacob Faibussowitsch PetscCall(MatMPISBAIJSetPreallocation(M, bs, 0, dlens, 0, olens)); 20129566063dSJacob Faibussowitsch PetscCall(PetscFree2(dlens, olens)); 201382094794SBarry Smith } else { 201482094794SBarry Smith PetscInt ml, nl; 201582094794SBarry Smith 201682094794SBarry Smith M = *newmat; 20179566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(M, &ml, &nl)); 20185f80ce2aSJacob Faibussowitsch PetscCheck(ml == m, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Previous matrix must be same size/layout as request"); 20199566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(M)); 202082094794SBarry Smith /* 202182094794SBarry Smith The next two lines are needed so we may call MatSetValues_MPIAIJ() below directly, 202282094794SBarry Smith rather than the slower MatSetValues(). 202382094794SBarry Smith */ 202482094794SBarry Smith M->was_assembled = PETSC_TRUE; 202582094794SBarry Smith M->assembled = PETSC_FALSE; 202682094794SBarry Smith } 20279566063dSJacob Faibussowitsch PetscCall(MatSetOption(M, MAT_ROW_ORIENTED, PETSC_FALSE)); 20289566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(M, &rstart, &rend)); 202982094794SBarry Smith aij = (Mat_SeqBAIJ *)(Mreuse)->data; 203082094794SBarry Smith ii = aij->i; 203182094794SBarry Smith jj = aij->j; 203282094794SBarry Smith aa = aij->a; 203382094794SBarry Smith for (i = 0; i < m; i++) { 203482094794SBarry Smith row = rstart / bs + i; 203582094794SBarry Smith nz = ii[i + 1] - ii[i]; 20369371c9d4SSatish Balay cwork = jj; 20379371c9d4SSatish Balay jj += nz; 20389371c9d4SSatish Balay vwork = aa; 20399371c9d4SSatish Balay aa += nz * bs * bs; 20409566063dSJacob Faibussowitsch PetscCall(MatSetValuesBlocked_MPIBAIJ(M, 1, &row, nz, cwork, vwork, INSERT_VALUES)); 204182094794SBarry Smith } 204282094794SBarry Smith 20439566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(M, MAT_FINAL_ASSEMBLY)); 20449566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(M, MAT_FINAL_ASSEMBLY)); 204582094794SBarry Smith *newmat = M; 204682094794SBarry Smith 204782094794SBarry Smith /* save submatrix used in processor for next request */ 204882094794SBarry Smith if (call == MAT_INITIAL_MATRIX) { 20499566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)M, "SubMatrix", (PetscObject)Mreuse)); 20509566063dSJacob Faibussowitsch PetscCall(PetscObjectDereference((PetscObject)Mreuse)); 205182094794SBarry Smith } 20523ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 205382094794SBarry Smith } 205482094794SBarry Smith 2055d71ae5a4SJacob Faibussowitsch PetscErrorCode MatPermute_MPIBAIJ(Mat A, IS rowp, IS colp, Mat *B) 2056d71ae5a4SJacob Faibussowitsch { 205782094794SBarry Smith MPI_Comm comm, pcomm; 2058a0a83eb5SRémi Lacroix PetscInt clocal_size, nrows; 205982094794SBarry Smith const PetscInt *rows; 2060dbf0e21dSBarry Smith PetscMPIInt size; 2061a0a83eb5SRémi Lacroix IS crowp, lcolp; 206282094794SBarry Smith 206382094794SBarry Smith PetscFunctionBegin; 20649566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)A, &comm)); 206582094794SBarry Smith /* make a collective version of 'rowp' */ 20669566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)rowp, &pcomm)); 206782094794SBarry Smith if (pcomm == comm) { 206882094794SBarry Smith crowp = rowp; 206982094794SBarry Smith } else { 20709566063dSJacob Faibussowitsch PetscCall(ISGetSize(rowp, &nrows)); 20719566063dSJacob Faibussowitsch PetscCall(ISGetIndices(rowp, &rows)); 20729566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(comm, nrows, rows, PETSC_COPY_VALUES, &crowp)); 20739566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(rowp, &rows)); 207482094794SBarry Smith } 20759566063dSJacob Faibussowitsch PetscCall(ISSetPermutation(crowp)); 2076a0a83eb5SRémi Lacroix /* make a local version of 'colp' */ 20779566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)colp, &pcomm)); 20789566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(pcomm, &size)); 2079dbf0e21dSBarry Smith if (size == 1) { 208082094794SBarry Smith lcolp = colp; 208182094794SBarry Smith } else { 20829566063dSJacob Faibussowitsch PetscCall(ISAllGather(colp, &lcolp)); 208382094794SBarry Smith } 20849566063dSJacob Faibussowitsch PetscCall(ISSetPermutation(lcolp)); 208575f6568bSJed Brown /* now we just get the submatrix */ 20869566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(A, NULL, &clocal_size)); 20879566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrix_MPIBAIJ_Private(A, crowp, lcolp, clocal_size, MAT_INITIAL_MATRIX, B)); 2088a0a83eb5SRémi Lacroix /* clean up */ 208948a46eb9SPierre Jolivet if (pcomm != comm) PetscCall(ISDestroy(&crowp)); 209048a46eb9SPierre Jolivet if (size > 1) PetscCall(ISDestroy(&lcolp)); 20913ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 209282094794SBarry Smith } 209382094794SBarry Smith 2094d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetGhosts_MPIBAIJ(Mat mat, PetscInt *nghosts, const PetscInt *ghosts[]) 2095d71ae5a4SJacob Faibussowitsch { 20968c7482ecSBarry Smith Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 20978c7482ecSBarry Smith Mat_SeqBAIJ *B = (Mat_SeqBAIJ *)baij->B->data; 20988c7482ecSBarry Smith 20998c7482ecSBarry Smith PetscFunctionBegin; 210026fbe8dcSKarl Rupp if (nghosts) *nghosts = B->nbs; 210126fbe8dcSKarl Rupp if (ghosts) *ghosts = baij->garray; 21023ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 21038c7482ecSBarry Smith } 21048c7482ecSBarry Smith 2105d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetSeqNonzeroStructure_MPIBAIJ(Mat A, Mat *newmat) 2106d71ae5a4SJacob Faibussowitsch { 2107f6d58c54SBarry Smith Mat B; 2108f6d58c54SBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 2109f6d58c54SBarry Smith Mat_SeqBAIJ *ad = (Mat_SeqBAIJ *)a->A->data, *bd = (Mat_SeqBAIJ *)a->B->data; 2110f6d58c54SBarry Smith Mat_SeqAIJ *b; 2111f4259b30SLisandro Dalcin PetscMPIInt size, rank, *recvcounts = NULL, *displs = NULL; 2112f6d58c54SBarry Smith PetscInt sendcount, i, *rstarts = A->rmap->range, n, cnt, j, bs = A->rmap->bs; 2113f6d58c54SBarry Smith PetscInt m, *garray = a->garray, *lens, *jsendbuf, *a_jsendbuf, *b_jsendbuf; 2114f6d58c54SBarry Smith 2115f6d58c54SBarry Smith PetscFunctionBegin; 21169566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)A), &size)); 21179566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)A), &rank)); 2118f6d58c54SBarry Smith 21192ef1f0ffSBarry Smith /* Tell every processor the number of nonzeros per row */ 21209566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(A->rmap->N / bs, &lens)); 2121ad540459SPierre Jolivet for (i = A->rmap->rstart / bs; i < A->rmap->rend / bs; i++) lens[i] = ad->i[i - A->rmap->rstart / bs + 1] - ad->i[i - A->rmap->rstart / bs] + bd->i[i - A->rmap->rstart / bs + 1] - bd->i[i - A->rmap->rstart / bs]; 21229566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(2 * size, &recvcounts)); 2123f6d58c54SBarry Smith displs = recvcounts + size; 2124f6d58c54SBarry Smith for (i = 0; i < size; i++) { 2125f6d58c54SBarry Smith recvcounts[i] = A->rmap->range[i + 1] / bs - A->rmap->range[i] / bs; 2126f6d58c54SBarry Smith displs[i] = A->rmap->range[i] / bs; 2127f6d58c54SBarry Smith } 21289566063dSJacob Faibussowitsch PetscCallMPI(MPI_Allgatherv(MPI_IN_PLACE, 0, MPI_DATATYPE_NULL, lens, recvcounts, displs, MPIU_INT, PetscObjectComm((PetscObject)A))); 21292ef1f0ffSBarry Smith /* Create the sequential matrix of the same type as the local block diagonal */ 21309566063dSJacob Faibussowitsch PetscCall(MatCreate(PETSC_COMM_SELF, &B)); 21319566063dSJacob Faibussowitsch PetscCall(MatSetSizes(B, A->rmap->N / bs, A->cmap->N / bs, PETSC_DETERMINE, PETSC_DETERMINE)); 21329566063dSJacob Faibussowitsch PetscCall(MatSetType(B, MATSEQAIJ)); 21339566063dSJacob Faibussowitsch PetscCall(MatSeqAIJSetPreallocation(B, 0, lens)); 2134f6d58c54SBarry Smith b = (Mat_SeqAIJ *)B->data; 2135f6d58c54SBarry Smith 21362ef1f0ffSBarry Smith /* Copy my part of matrix column indices over */ 2137f6d58c54SBarry Smith sendcount = ad->nz + bd->nz; 2138f6d58c54SBarry Smith jsendbuf = b->j + b->i[rstarts[rank] / bs]; 2139f6d58c54SBarry Smith a_jsendbuf = ad->j; 2140f6d58c54SBarry Smith b_jsendbuf = bd->j; 2141f6d58c54SBarry Smith n = A->rmap->rend / bs - A->rmap->rstart / bs; 2142f6d58c54SBarry Smith cnt = 0; 2143f6d58c54SBarry Smith for (i = 0; i < n; i++) { 2144f6d58c54SBarry Smith /* put in lower diagonal portion */ 2145f6d58c54SBarry Smith m = bd->i[i + 1] - bd->i[i]; 2146f6d58c54SBarry Smith while (m > 0) { 2147f6d58c54SBarry Smith /* is it above diagonal (in bd (compressed) numbering) */ 2148f6d58c54SBarry Smith if (garray[*b_jsendbuf] > A->rmap->rstart / bs + i) break; 2149f6d58c54SBarry Smith jsendbuf[cnt++] = garray[*b_jsendbuf++]; 2150f6d58c54SBarry Smith m--; 2151f6d58c54SBarry Smith } 2152f6d58c54SBarry Smith 2153f6d58c54SBarry Smith /* put in diagonal portion */ 2154ad540459SPierre Jolivet for (j = ad->i[i]; j < ad->i[i + 1]; j++) jsendbuf[cnt++] = A->rmap->rstart / bs + *a_jsendbuf++; 2155f6d58c54SBarry Smith 2156f6d58c54SBarry Smith /* put in upper diagonal portion */ 2157ad540459SPierre Jolivet while (m-- > 0) jsendbuf[cnt++] = garray[*b_jsendbuf++]; 2158f6d58c54SBarry Smith } 21595f80ce2aSJacob Faibussowitsch PetscCheck(cnt == sendcount, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Corrupted PETSc matrix: nz given %" PetscInt_FMT " actual nz %" PetscInt_FMT, sendcount, cnt); 2160f6d58c54SBarry Smith 21612ef1f0ffSBarry Smith /* Gather all column indices to all processors */ 2162f6d58c54SBarry Smith for (i = 0; i < size; i++) { 2163f6d58c54SBarry Smith recvcounts[i] = 0; 2164ad540459SPierre Jolivet for (j = A->rmap->range[i] / bs; j < A->rmap->range[i + 1] / bs; j++) recvcounts[i] += lens[j]; 2165f6d58c54SBarry Smith } 2166f6d58c54SBarry Smith displs[0] = 0; 2167ad540459SPierre Jolivet for (i = 1; i < size; i++) displs[i] = displs[i - 1] + recvcounts[i - 1]; 21689566063dSJacob Faibussowitsch PetscCallMPI(MPI_Allgatherv(MPI_IN_PLACE, 0, MPI_DATATYPE_NULL, b->j, recvcounts, displs, MPIU_INT, PetscObjectComm((PetscObject)A))); 21692ef1f0ffSBarry Smith /* Assemble the matrix into useable form (note numerical values not yet set) */ 2170f6d58c54SBarry Smith /* set the b->ilen (length of each row) values */ 21719566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(b->ilen, lens, A->rmap->N / bs)); 2172f6d58c54SBarry Smith /* set the b->i indices */ 2173f6d58c54SBarry Smith b->i[0] = 0; 2174ad540459SPierre Jolivet for (i = 1; i <= A->rmap->N / bs; i++) b->i[i] = b->i[i - 1] + lens[i - 1]; 21759566063dSJacob Faibussowitsch PetscCall(PetscFree(lens)); 21769566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY)); 21779566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY)); 21789566063dSJacob Faibussowitsch PetscCall(PetscFree(recvcounts)); 2179f6d58c54SBarry Smith 2180b94d7dedSBarry Smith PetscCall(MatPropagateSymmetryOptions(A, B)); 2181f6d58c54SBarry Smith *newmat = B; 21823ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2183f6d58c54SBarry Smith } 2184f6d58c54SBarry Smith 2185d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSOR_MPIBAIJ(Mat matin, Vec bb, PetscReal omega, MatSORType flag, PetscReal fshift, PetscInt its, PetscInt lits, Vec xx) 2186d71ae5a4SJacob Faibussowitsch { 2187b1a666ecSBarry Smith Mat_MPIBAIJ *mat = (Mat_MPIBAIJ *)matin->data; 2188f4259b30SLisandro Dalcin Vec bb1 = NULL; 2189b1a666ecSBarry Smith 2190b1a666ecSBarry Smith PetscFunctionBegin; 2191b1a666ecSBarry Smith if (flag == SOR_APPLY_UPPER) { 21929566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx)); 21933ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2194b1a666ecSBarry Smith } 2195b1a666ecSBarry Smith 219648a46eb9SPierre Jolivet if (its > 1 || ~flag & SOR_ZERO_INITIAL_GUESS) PetscCall(VecDuplicate(bb, &bb1)); 21974e980039SJed Brown 2198b1a666ecSBarry Smith if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP) { 2199b1a666ecSBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 22009566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx)); 2201b1a666ecSBarry Smith its--; 2202b1a666ecSBarry Smith } 2203b1a666ecSBarry Smith 2204b1a666ecSBarry Smith while (its--) { 22059566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 22069566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 2207b1a666ecSBarry Smith 2208b1a666ecSBarry Smith /* update rhs: bb1 = bb - B*x */ 22099566063dSJacob Faibussowitsch PetscCall(VecScale(mat->lvec, -1.0)); 22109566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->multadd)(mat->B, mat->lvec, bb, bb1)); 2211b1a666ecSBarry Smith 2212b1a666ecSBarry Smith /* local sweep */ 22139566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, SOR_SYMMETRIC_SWEEP, fshift, lits, 1, xx)); 2214b1a666ecSBarry Smith } 2215b1a666ecSBarry Smith } else if (flag & SOR_LOCAL_FORWARD_SWEEP) { 2216b1a666ecSBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 22179566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx)); 2218b1a666ecSBarry Smith its--; 2219b1a666ecSBarry Smith } 2220b1a666ecSBarry Smith while (its--) { 22219566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 22229566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 2223b1a666ecSBarry Smith 2224b1a666ecSBarry Smith /* update rhs: bb1 = bb - B*x */ 22259566063dSJacob Faibussowitsch PetscCall(VecScale(mat->lvec, -1.0)); 22269566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->multadd)(mat->B, mat->lvec, bb, bb1)); 2227b1a666ecSBarry Smith 2228b1a666ecSBarry Smith /* local sweep */ 22299566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, SOR_FORWARD_SWEEP, fshift, lits, 1, xx)); 2230b1a666ecSBarry Smith } 2231b1a666ecSBarry Smith } else if (flag & SOR_LOCAL_BACKWARD_SWEEP) { 2232b1a666ecSBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 22339566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx)); 2234b1a666ecSBarry Smith its--; 2235b1a666ecSBarry Smith } 2236b1a666ecSBarry Smith while (its--) { 22379566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 22389566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 2239b1a666ecSBarry Smith 2240b1a666ecSBarry Smith /* update rhs: bb1 = bb - B*x */ 22419566063dSJacob Faibussowitsch PetscCall(VecScale(mat->lvec, -1.0)); 22429566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->multadd)(mat->B, mat->lvec, bb, bb1)); 2243b1a666ecSBarry Smith 2244b1a666ecSBarry Smith /* local sweep */ 22459566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, SOR_BACKWARD_SWEEP, fshift, lits, 1, xx)); 2246b1a666ecSBarry Smith } 2247ce94432eSBarry Smith } else SETERRQ(PetscObjectComm((PetscObject)matin), PETSC_ERR_SUP, "Parallel version of SOR requested not supported"); 2248b1a666ecSBarry Smith 22499566063dSJacob Faibussowitsch PetscCall(VecDestroy(&bb1)); 22503ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2251b1a666ecSBarry Smith } 2252b1a666ecSBarry Smith 2253d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetColumnReductions_MPIBAIJ(Mat A, PetscInt type, PetscReal *reductions) 2254d71ae5a4SJacob Faibussowitsch { 225547f7623dSRémi Lacroix Mat_MPIBAIJ *aij = (Mat_MPIBAIJ *)A->data; 2256a873a8cdSSam Reynolds PetscInt m, N, i, *garray = aij->garray; 225747f7623dSRémi Lacroix PetscInt ib, jb, bs = A->rmap->bs; 225847f7623dSRémi Lacroix Mat_SeqBAIJ *a_aij = (Mat_SeqBAIJ *)aij->A->data; 225947f7623dSRémi Lacroix MatScalar *a_val = a_aij->a; 226047f7623dSRémi Lacroix Mat_SeqBAIJ *b_aij = (Mat_SeqBAIJ *)aij->B->data; 226147f7623dSRémi Lacroix MatScalar *b_val = b_aij->a; 226247f7623dSRémi Lacroix PetscReal *work; 226347f7623dSRémi Lacroix 226447f7623dSRémi Lacroix PetscFunctionBegin; 22659566063dSJacob Faibussowitsch PetscCall(MatGetSize(A, &m, &N)); 22669566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(N, &work)); 2267857cbf51SRichard Tran Mills if (type == NORM_2) { 226847f7623dSRémi Lacroix for (i = a_aij->i[0]; i < a_aij->i[aij->A->rmap->n / bs]; i++) { 226947f7623dSRémi Lacroix for (jb = 0; jb < bs; jb++) { 227047f7623dSRémi Lacroix for (ib = 0; ib < bs; ib++) { 227147f7623dSRémi Lacroix work[A->cmap->rstart + a_aij->j[i] * bs + jb] += PetscAbsScalar(*a_val * *a_val); 227247f7623dSRémi Lacroix a_val++; 227347f7623dSRémi Lacroix } 227447f7623dSRémi Lacroix } 227547f7623dSRémi Lacroix } 227647f7623dSRémi Lacroix for (i = b_aij->i[0]; i < b_aij->i[aij->B->rmap->n / bs]; i++) { 227747f7623dSRémi Lacroix for (jb = 0; jb < bs; jb++) { 227847f7623dSRémi Lacroix for (ib = 0; ib < bs; ib++) { 227947f7623dSRémi Lacroix work[garray[b_aij->j[i]] * bs + jb] += PetscAbsScalar(*b_val * *b_val); 228047f7623dSRémi Lacroix b_val++; 228147f7623dSRémi Lacroix } 228247f7623dSRémi Lacroix } 228347f7623dSRémi Lacroix } 2284857cbf51SRichard Tran Mills } else if (type == NORM_1) { 228547f7623dSRémi Lacroix for (i = a_aij->i[0]; i < a_aij->i[aij->A->rmap->n / bs]; i++) { 228647f7623dSRémi Lacroix for (jb = 0; jb < bs; jb++) { 228747f7623dSRémi Lacroix for (ib = 0; ib < bs; ib++) { 228847f7623dSRémi Lacroix work[A->cmap->rstart + a_aij->j[i] * bs + jb] += PetscAbsScalar(*a_val); 228947f7623dSRémi Lacroix a_val++; 229047f7623dSRémi Lacroix } 229147f7623dSRémi Lacroix } 229247f7623dSRémi Lacroix } 229347f7623dSRémi Lacroix for (i = b_aij->i[0]; i < b_aij->i[aij->B->rmap->n / bs]; i++) { 229447f7623dSRémi Lacroix for (jb = 0; jb < bs; jb++) { 229547f7623dSRémi Lacroix for (ib = 0; ib < bs; ib++) { 229647f7623dSRémi Lacroix work[garray[b_aij->j[i]] * bs + jb] += PetscAbsScalar(*b_val); 229747f7623dSRémi Lacroix b_val++; 229847f7623dSRémi Lacroix } 229947f7623dSRémi Lacroix } 230047f7623dSRémi Lacroix } 2301857cbf51SRichard Tran Mills } else if (type == NORM_INFINITY) { 230247f7623dSRémi Lacroix for (i = a_aij->i[0]; i < a_aij->i[aij->A->rmap->n / bs]; i++) { 230347f7623dSRémi Lacroix for (jb = 0; jb < bs; jb++) { 230447f7623dSRémi Lacroix for (ib = 0; ib < bs; ib++) { 230547f7623dSRémi Lacroix int col = A->cmap->rstart + a_aij->j[i] * bs + jb; 230647f7623dSRémi Lacroix work[col] = PetscMax(PetscAbsScalar(*a_val), work[col]); 230747f7623dSRémi Lacroix a_val++; 230847f7623dSRémi Lacroix } 230947f7623dSRémi Lacroix } 231047f7623dSRémi Lacroix } 231147f7623dSRémi Lacroix for (i = b_aij->i[0]; i < b_aij->i[aij->B->rmap->n / bs]; i++) { 231247f7623dSRémi Lacroix for (jb = 0; jb < bs; jb++) { 231347f7623dSRémi Lacroix for (ib = 0; ib < bs; ib++) { 231447f7623dSRémi Lacroix int col = garray[b_aij->j[i]] * bs + jb; 231547f7623dSRémi Lacroix work[col] = PetscMax(PetscAbsScalar(*b_val), work[col]); 231647f7623dSRémi Lacroix b_val++; 231747f7623dSRémi Lacroix } 231847f7623dSRémi Lacroix } 231947f7623dSRémi Lacroix } 2320857cbf51SRichard Tran Mills } else if (type == REDUCTION_SUM_REALPART || type == REDUCTION_MEAN_REALPART) { 2321a873a8cdSSam Reynolds for (i = a_aij->i[0]; i < a_aij->i[aij->A->rmap->n / bs]; i++) { 2322a873a8cdSSam Reynolds for (jb = 0; jb < bs; jb++) { 2323a873a8cdSSam Reynolds for (ib = 0; ib < bs; ib++) { 2324857cbf51SRichard Tran Mills work[A->cmap->rstart + a_aij->j[i] * bs + jb] += PetscRealPart(*a_val); 2325a873a8cdSSam Reynolds a_val++; 2326a873a8cdSSam Reynolds } 2327a873a8cdSSam Reynolds } 2328a873a8cdSSam Reynolds } 2329a873a8cdSSam Reynolds for (i = b_aij->i[0]; i < b_aij->i[aij->B->rmap->n / bs]; i++) { 2330a873a8cdSSam Reynolds for (jb = 0; jb < bs; jb++) { 2331a873a8cdSSam Reynolds for (ib = 0; ib < bs; ib++) { 2332857cbf51SRichard Tran Mills work[garray[b_aij->j[i]] * bs + jb] += PetscRealPart(*b_val); 2333a873a8cdSSam Reynolds b_val++; 2334a873a8cdSSam Reynolds } 2335a873a8cdSSam Reynolds } 2336a873a8cdSSam Reynolds } 2337857cbf51SRichard Tran Mills } else if (type == REDUCTION_SUM_IMAGINARYPART || type == REDUCTION_MEAN_IMAGINARYPART) { 2338857cbf51SRichard Tran Mills for (i = a_aij->i[0]; i < a_aij->i[aij->A->rmap->n / bs]; i++) { 2339857cbf51SRichard Tran Mills for (jb = 0; jb < bs; jb++) { 2340857cbf51SRichard Tran Mills for (ib = 0; ib < bs; ib++) { 2341857cbf51SRichard Tran Mills work[A->cmap->rstart + a_aij->j[i] * bs + jb] += PetscImaginaryPart(*a_val); 2342857cbf51SRichard Tran Mills a_val++; 2343857cbf51SRichard Tran Mills } 2344857cbf51SRichard Tran Mills } 2345857cbf51SRichard Tran Mills } 2346857cbf51SRichard Tran Mills for (i = b_aij->i[0]; i < b_aij->i[aij->B->rmap->n / bs]; i++) { 2347857cbf51SRichard Tran Mills for (jb = 0; jb < bs; jb++) { 2348857cbf51SRichard Tran Mills for (ib = 0; ib < bs; ib++) { 2349857cbf51SRichard Tran Mills work[garray[b_aij->j[i]] * bs + jb] += PetscImaginaryPart(*b_val); 2350857cbf51SRichard Tran Mills b_val++; 2351857cbf51SRichard Tran Mills } 2352857cbf51SRichard Tran Mills } 2353857cbf51SRichard Tran Mills } 2354857cbf51SRichard Tran Mills } else SETERRQ(PetscObjectComm((PetscObject)A), PETSC_ERR_ARG_WRONG, "Unknown reduction type"); 2355857cbf51SRichard Tran Mills if (type == NORM_INFINITY) { 23561c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(work, reductions, N, MPIU_REAL, MPIU_MAX, PetscObjectComm((PetscObject)A))); 235747f7623dSRémi Lacroix } else { 23581c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(work, reductions, N, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)A))); 235947f7623dSRémi Lacroix } 23609566063dSJacob Faibussowitsch PetscCall(PetscFree(work)); 2361857cbf51SRichard Tran Mills if (type == NORM_2) { 2362a873a8cdSSam Reynolds for (i = 0; i < N; i++) reductions[i] = PetscSqrtReal(reductions[i]); 2363857cbf51SRichard Tran Mills } else if (type == REDUCTION_MEAN_REALPART || type == REDUCTION_MEAN_IMAGINARYPART) { 2364a873a8cdSSam Reynolds for (i = 0; i < N; i++) reductions[i] /= m; 236547f7623dSRémi Lacroix } 23663ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 236747f7623dSRémi Lacroix } 236847f7623dSRémi Lacroix 2369d71ae5a4SJacob Faibussowitsch PetscErrorCode MatInvertBlockDiagonal_MPIBAIJ(Mat A, const PetscScalar **values) 2370d71ae5a4SJacob Faibussowitsch { 2371bbead8a2SBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 2372bbead8a2SBarry Smith 2373bbead8a2SBarry Smith PetscFunctionBegin; 23749566063dSJacob Faibussowitsch PetscCall(MatInvertBlockDiagonal(a->A, values)); 23757b6c816cSBarry Smith A->factorerrortype = a->A->factorerrortype; 23767b6c816cSBarry Smith A->factorerror_zeropivot_value = a->A->factorerror_zeropivot_value; 23777b6c816cSBarry Smith A->factorerror_zeropivot_row = a->A->factorerror_zeropivot_row; 23783ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2379bbead8a2SBarry Smith } 2380bbead8a2SBarry Smith 2381d71ae5a4SJacob Faibussowitsch PetscErrorCode MatShift_MPIBAIJ(Mat Y, PetscScalar a) 2382d71ae5a4SJacob Faibussowitsch { 23837d68702bSBarry Smith Mat_MPIBAIJ *maij = (Mat_MPIBAIJ *)Y->data; 23846f33a894SBarry Smith Mat_SeqBAIJ *aij = (Mat_SeqBAIJ *)maij->A->data; 23857d68702bSBarry Smith 23867d68702bSBarry Smith PetscFunctionBegin; 23876f33a894SBarry Smith if (!Y->preallocated) { 23889566063dSJacob Faibussowitsch PetscCall(MatMPIBAIJSetPreallocation(Y, Y->rmap->bs, 1, NULL, 0, NULL)); 23896f33a894SBarry Smith } else if (!aij->nz) { 2390b83222d8SBarry Smith PetscInt nonew = aij->nonew; 23919566063dSJacob Faibussowitsch PetscCall(MatSeqBAIJSetPreallocation(maij->A, Y->rmap->bs, 1, NULL)); 2392b83222d8SBarry Smith aij->nonew = nonew; 23937d68702bSBarry Smith } 23949566063dSJacob Faibussowitsch PetscCall(MatShift_Basic(Y, a)); 23953ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 23967d68702bSBarry Smith } 23978c7482ecSBarry Smith 2398d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMissingDiagonal_MPIBAIJ(Mat A, PetscBool *missing, PetscInt *d) 2399d71ae5a4SJacob Faibussowitsch { 24003b49f96aSBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 24013b49f96aSBarry Smith 24023b49f96aSBarry Smith PetscFunctionBegin; 24035f80ce2aSJacob Faibussowitsch PetscCheck(A->rmap->n == A->cmap->n, PETSC_COMM_SELF, PETSC_ERR_SUP, "Only works for square matrices"); 24049566063dSJacob Faibussowitsch PetscCall(MatMissingDiagonal(a->A, missing, d)); 24053b49f96aSBarry Smith if (d) { 24063b49f96aSBarry Smith PetscInt rstart; 24079566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(A, &rstart, NULL)); 24083b49f96aSBarry Smith *d += rstart / A->rmap->bs; 24093b49f96aSBarry Smith } 24103ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 24113b49f96aSBarry Smith } 24123b49f96aSBarry Smith 2413d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetDiagonalBlock_MPIBAIJ(Mat A, Mat *a) 2414d71ae5a4SJacob Faibussowitsch { 2415a5b7ff6bSBarry Smith PetscFunctionBegin; 2416a5b7ff6bSBarry Smith *a = ((Mat_MPIBAIJ *)A->data)->A; 24173ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2418a5b7ff6bSBarry Smith } 2419a5b7ff6bSBarry Smith 24203964eb88SJed Brown static struct _MatOps MatOps_Values = {MatSetValues_MPIBAIJ, 2421cc2dc46cSBarry Smith MatGetRow_MPIBAIJ, 2422cc2dc46cSBarry Smith MatRestoreRow_MPIBAIJ, 2423cc2dc46cSBarry Smith MatMult_MPIBAIJ, 242497304618SKris Buschelman /* 4*/ MatMultAdd_MPIBAIJ, 24257c922b88SBarry Smith MatMultTranspose_MPIBAIJ, 24267c922b88SBarry Smith MatMultTransposeAdd_MPIBAIJ, 2427f4259b30SLisandro Dalcin NULL, 2428f4259b30SLisandro Dalcin NULL, 2429f4259b30SLisandro Dalcin NULL, 2430f4259b30SLisandro Dalcin /*10*/ NULL, 2431f4259b30SLisandro Dalcin NULL, 2432f4259b30SLisandro Dalcin NULL, 2433b1a666ecSBarry Smith MatSOR_MPIBAIJ, 2434cc2dc46cSBarry Smith MatTranspose_MPIBAIJ, 243597304618SKris Buschelman /*15*/ MatGetInfo_MPIBAIJ, 24367fc3c18eSBarry Smith MatEqual_MPIBAIJ, 2437cc2dc46cSBarry Smith MatGetDiagonal_MPIBAIJ, 2438cc2dc46cSBarry Smith MatDiagonalScale_MPIBAIJ, 2439cc2dc46cSBarry Smith MatNorm_MPIBAIJ, 244097304618SKris Buschelman /*20*/ MatAssemblyBegin_MPIBAIJ, 2441cc2dc46cSBarry Smith MatAssemblyEnd_MPIBAIJ, 2442cc2dc46cSBarry Smith MatSetOption_MPIBAIJ, 2443cc2dc46cSBarry Smith MatZeroEntries_MPIBAIJ, 2444d519adbfSMatthew Knepley /*24*/ MatZeroRows_MPIBAIJ, 2445f4259b30SLisandro Dalcin NULL, 2446f4259b30SLisandro Dalcin NULL, 2447f4259b30SLisandro Dalcin NULL, 2448f4259b30SLisandro Dalcin NULL, 244926cec326SBarry Smith /*29*/ MatSetUp_MPI_Hash, 2450f4259b30SLisandro Dalcin NULL, 2451f4259b30SLisandro Dalcin NULL, 2452a5b7ff6bSBarry Smith MatGetDiagonalBlock_MPIBAIJ, 2453f4259b30SLisandro Dalcin NULL, 2454d519adbfSMatthew Knepley /*34*/ MatDuplicate_MPIBAIJ, 2455f4259b30SLisandro Dalcin NULL, 2456f4259b30SLisandro Dalcin NULL, 2457f4259b30SLisandro Dalcin NULL, 2458f4259b30SLisandro Dalcin NULL, 2459d519adbfSMatthew Knepley /*39*/ MatAXPY_MPIBAIJ, 24607dae84e0SHong Zhang MatCreateSubMatrices_MPIBAIJ, 2461cc2dc46cSBarry Smith MatIncreaseOverlap_MPIBAIJ, 2462cc2dc46cSBarry Smith MatGetValues_MPIBAIJ, 24633c896bc6SHong Zhang MatCopy_MPIBAIJ, 2464f4259b30SLisandro Dalcin /*44*/ NULL, 2465cc2dc46cSBarry Smith MatScale_MPIBAIJ, 24667d68702bSBarry Smith MatShift_MPIBAIJ, 2467f4259b30SLisandro Dalcin NULL, 24686f0a72daSMatthew G. Knepley MatZeroRowsColumns_MPIBAIJ, 2469f4259b30SLisandro Dalcin /*49*/ NULL, 2470f4259b30SLisandro Dalcin NULL, 2471f4259b30SLisandro Dalcin NULL, 2472f4259b30SLisandro Dalcin NULL, 2473f4259b30SLisandro Dalcin NULL, 247493dfae19SHong Zhang /*54*/ MatFDColoringCreate_MPIXAIJ, 2475f4259b30SLisandro Dalcin NULL, 2476cc2dc46cSBarry Smith MatSetUnfactored_MPIBAIJ, 247782094794SBarry Smith MatPermute_MPIBAIJ, 2478cc2dc46cSBarry Smith MatSetValuesBlocked_MPIBAIJ, 24797dae84e0SHong Zhang /*59*/ MatCreateSubMatrix_MPIBAIJ, 2480f14a1c24SBarry Smith MatDestroy_MPIBAIJ, 2481f14a1c24SBarry Smith MatView_MPIBAIJ, 2482f4259b30SLisandro Dalcin NULL, 2483f4259b30SLisandro Dalcin NULL, 2484f4259b30SLisandro Dalcin /*64*/ NULL, 2485f4259b30SLisandro Dalcin NULL, 2486f4259b30SLisandro Dalcin NULL, 2487f4259b30SLisandro Dalcin NULL, 2488f4259b30SLisandro Dalcin NULL, 2489d519adbfSMatthew Knepley /*69*/ MatGetRowMaxAbs_MPIBAIJ, 2490f4259b30SLisandro Dalcin NULL, 2491f4259b30SLisandro Dalcin NULL, 2492f4259b30SLisandro Dalcin NULL, 2493f4259b30SLisandro Dalcin NULL, 2494f4259b30SLisandro Dalcin /*74*/ NULL, 2495f6d58c54SBarry Smith MatFDColoringApply_BAIJ, 2496f4259b30SLisandro Dalcin NULL, 2497f4259b30SLisandro Dalcin NULL, 2498f4259b30SLisandro Dalcin NULL, 2499f4259b30SLisandro Dalcin /*79*/ NULL, 2500f4259b30SLisandro Dalcin NULL, 2501f4259b30SLisandro Dalcin NULL, 2502f4259b30SLisandro Dalcin NULL, 25035bba2384SShri Abhyankar MatLoad_MPIBAIJ, 2504f4259b30SLisandro Dalcin /*84*/ NULL, 2505f4259b30SLisandro Dalcin NULL, 2506f4259b30SLisandro Dalcin NULL, 2507f4259b30SLisandro Dalcin NULL, 2508f4259b30SLisandro Dalcin NULL, 2509f4259b30SLisandro Dalcin /*89*/ NULL, 2510f4259b30SLisandro Dalcin NULL, 2511f4259b30SLisandro Dalcin NULL, 2512f4259b30SLisandro Dalcin NULL, 2513f4259b30SLisandro Dalcin NULL, 2514f4259b30SLisandro Dalcin /*94*/ NULL, 2515f4259b30SLisandro Dalcin NULL, 2516f4259b30SLisandro Dalcin NULL, 2517f4259b30SLisandro Dalcin NULL, 2518f4259b30SLisandro Dalcin NULL, 2519f4259b30SLisandro Dalcin /*99*/ NULL, 2520f4259b30SLisandro Dalcin NULL, 2521f4259b30SLisandro Dalcin NULL, 25222726fb6dSPierre Jolivet MatConjugate_MPIBAIJ, 2523f4259b30SLisandro Dalcin NULL, 2524f4259b30SLisandro Dalcin /*104*/ NULL, 252599cafbc1SBarry Smith MatRealPart_MPIBAIJ, 25268c7482ecSBarry Smith MatImaginaryPart_MPIBAIJ, 2527f4259b30SLisandro Dalcin NULL, 2528f4259b30SLisandro Dalcin NULL, 2529f4259b30SLisandro Dalcin /*109*/ NULL, 2530f4259b30SLisandro Dalcin NULL, 2531f4259b30SLisandro Dalcin NULL, 2532f4259b30SLisandro Dalcin NULL, 25333b49f96aSBarry Smith MatMissingDiagonal_MPIBAIJ, 2534d1adec66SJed Brown /*114*/ MatGetSeqNonzeroStructure_MPIBAIJ, 2535f4259b30SLisandro Dalcin NULL, 25364683f7a4SShri Abhyankar MatGetGhosts_MPIBAIJ, 2537f4259b30SLisandro Dalcin NULL, 2538f4259b30SLisandro Dalcin NULL, 2539f4259b30SLisandro Dalcin /*119*/ NULL, 2540f4259b30SLisandro Dalcin NULL, 2541f4259b30SLisandro Dalcin NULL, 2542f4259b30SLisandro Dalcin NULL, 2543e8271787SHong Zhang MatGetMultiProcBlock_MPIBAIJ, 2544f4259b30SLisandro Dalcin /*124*/ NULL, 2545a873a8cdSSam Reynolds MatGetColumnReductions_MPIBAIJ, 25463964eb88SJed Brown MatInvertBlockDiagonal_MPIBAIJ, 2547f4259b30SLisandro Dalcin NULL, 2548f4259b30SLisandro Dalcin NULL, 2549f4259b30SLisandro Dalcin /*129*/ NULL, 2550f4259b30SLisandro Dalcin NULL, 2551f4259b30SLisandro Dalcin NULL, 2552f4259b30SLisandro Dalcin NULL, 2553f4259b30SLisandro Dalcin NULL, 2554f4259b30SLisandro Dalcin /*134*/ NULL, 2555f4259b30SLisandro Dalcin NULL, 2556f4259b30SLisandro Dalcin NULL, 2557f4259b30SLisandro Dalcin NULL, 2558f4259b30SLisandro Dalcin NULL, 255946533700Sstefano_zampini /*139*/ MatSetBlockSizes_Default, 2560f4259b30SLisandro Dalcin NULL, 2561f4259b30SLisandro Dalcin NULL, 2562bdf6f3fcSHong Zhang MatFDColoringSetUp_MPIXAIJ, 2563f4259b30SLisandro Dalcin NULL, 2564d70f29a3SPierre Jolivet /*144*/ MatCreateMPIMatConcatenateSeqMat_MPIBAIJ, 2565d70f29a3SPierre Jolivet NULL, 2566d70f29a3SPierre Jolivet NULL, 256799a7f59eSMark Adams NULL, 256899a7f59eSMark Adams NULL, 25697fb60732SBarry Smith NULL, 2570dec0b466SHong Zhang /*150*/ NULL, 2571dec0b466SHong Zhang NULL}; 257279bdfe76SSatish Balay 2573cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIBAIJ_MPISBAIJ(Mat, MatType, MatReuse, Mat *); 2574c9225affSStefano Zampini PETSC_INTERN PetscErrorCode MatConvert_XAIJ_IS(Mat, MatType, MatReuse, Mat *); 2575d94109b8SHong Zhang 2576d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIBAIJSetPreallocationCSR_MPIBAIJ(Mat B, PetscInt bs, const PetscInt ii[], const PetscInt jj[], const PetscScalar V[]) 2577d71ae5a4SJacob Faibussowitsch { 2578b8d659d7SLisandro Dalcin PetscInt m, rstart, cstart, cend; 2579f4259b30SLisandro Dalcin PetscInt i, j, dlen, olen, nz, nz_max = 0, *d_nnz = NULL, *o_nnz = NULL; 2580f4259b30SLisandro Dalcin const PetscInt *JJ = NULL; 2581f4259b30SLisandro Dalcin PetscScalar *values = NULL; 2582d47bf9aaSJed Brown PetscBool roworiented = ((Mat_MPIBAIJ *)B->data)->roworiented; 25833bd0feecSPierre Jolivet PetscBool nooffprocentries; 2584aac34f13SBarry Smith 2585aac34f13SBarry Smith PetscFunctionBegin; 25869566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetBlockSize(B->rmap, bs)); 25879566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetBlockSize(B->cmap, bs)); 25889566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->rmap)); 25899566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->cmap)); 25909566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetBlockSize(B->rmap, &bs)); 2591d0f46423SBarry Smith m = B->rmap->n / bs; 2592d0f46423SBarry Smith rstart = B->rmap->rstart / bs; 2593d0f46423SBarry Smith cstart = B->cmap->rstart / bs; 2594d0f46423SBarry Smith cend = B->cmap->rend / bs; 2595b8d659d7SLisandro Dalcin 25965f80ce2aSJacob Faibussowitsch PetscCheck(!ii[0], PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "ii[0] must be 0 but it is %" PetscInt_FMT, ii[0]); 25979566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(m, &d_nnz, m, &o_nnz)); 2598aac34f13SBarry Smith for (i = 0; i < m; i++) { 2599cf12db73SBarry Smith nz = ii[i + 1] - ii[i]; 26005f80ce2aSJacob Faibussowitsch PetscCheck(nz >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Local row %" PetscInt_FMT " has a negative number of columns %" PetscInt_FMT, i, nz); 2601b8d659d7SLisandro Dalcin nz_max = PetscMax(nz_max, nz); 260237cd3c0dSBarry Smith dlen = 0; 260337cd3c0dSBarry Smith olen = 0; 2604cf12db73SBarry Smith JJ = jj + ii[i]; 2605b8d659d7SLisandro Dalcin for (j = 0; j < nz; j++) { 260637cd3c0dSBarry Smith if (*JJ < cstart || *JJ >= cend) olen++; 260737cd3c0dSBarry Smith else dlen++; 2608aac34f13SBarry Smith JJ++; 2609aac34f13SBarry Smith } 261037cd3c0dSBarry Smith d_nnz[i] = dlen; 261137cd3c0dSBarry Smith o_nnz[i] = olen; 2612aac34f13SBarry Smith } 26139566063dSJacob Faibussowitsch PetscCall(MatMPIBAIJSetPreallocation(B, bs, 0, d_nnz, 0, o_nnz)); 26149566063dSJacob Faibussowitsch PetscCall(PetscFree2(d_nnz, o_nnz)); 2615aac34f13SBarry Smith 2616b8d659d7SLisandro Dalcin values = (PetscScalar *)V; 261748a46eb9SPierre Jolivet if (!values) PetscCall(PetscCalloc1(bs * bs * nz_max, &values)); 2618b8d659d7SLisandro Dalcin for (i = 0; i < m; i++) { 2619b8d659d7SLisandro Dalcin PetscInt row = i + rstart; 2620cf12db73SBarry Smith PetscInt ncols = ii[i + 1] - ii[i]; 2621cf12db73SBarry Smith const PetscInt *icols = jj + ii[i]; 2622bb80cfbbSStefano Zampini if (bs == 1 || !roworiented) { /* block ordering matches the non-nested layout of MatSetValues so we can insert entire rows */ 2623cf12db73SBarry Smith const PetscScalar *svals = values + (V ? (bs * bs * ii[i]) : 0); 26249566063dSJacob Faibussowitsch PetscCall(MatSetValuesBlocked_MPIBAIJ(B, 1, &row, ncols, icols, svals, INSERT_VALUES)); 26253adadaf3SJed Brown } else { /* block ordering does not match so we can only insert one block at a time. */ 26263adadaf3SJed Brown PetscInt j; 26273adadaf3SJed Brown for (j = 0; j < ncols; j++) { 26283adadaf3SJed Brown const PetscScalar *svals = values + (V ? (bs * bs * (ii[i] + j)) : 0); 26299566063dSJacob Faibussowitsch PetscCall(MatSetValuesBlocked_MPIBAIJ(B, 1, &row, 1, &icols[j], svals, INSERT_VALUES)); 26303adadaf3SJed Brown } 26313adadaf3SJed Brown } 2632aac34f13SBarry Smith } 2633aac34f13SBarry Smith 26349566063dSJacob Faibussowitsch if (!V) PetscCall(PetscFree(values)); 26353bd0feecSPierre Jolivet nooffprocentries = B->nooffprocentries; 26363bd0feecSPierre Jolivet B->nooffprocentries = PETSC_TRUE; 26379566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY)); 26389566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY)); 26393bd0feecSPierre Jolivet B->nooffprocentries = nooffprocentries; 26403bd0feecSPierre Jolivet 26419566063dSJacob Faibussowitsch PetscCall(MatSetOption(B, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE)); 26423ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2643aac34f13SBarry Smith } 2644aac34f13SBarry Smith 2645aac34f13SBarry Smith /*@C 264611a5261eSBarry Smith MatMPIBAIJSetPreallocationCSR - Creates a sparse parallel matrix in `MATBAIJ` format using the given nonzero structure and (optional) numerical values 2647aac34f13SBarry Smith 2648d083f849SBarry Smith Collective 2649aac34f13SBarry Smith 2650aac34f13SBarry Smith Input Parameters: 26511c4f3114SJed Brown + B - the matrix 2652dfb205c3SBarry Smith . bs - the block size 265320f4b53cSBarry Smith . i - the indices into `j` for the start of each local row (starts with zero) 2654aac34f13SBarry Smith . j - the column indices for each local row (starts with zero) these must be sorted for each row 2655aac34f13SBarry Smith - v - optional values in the matrix 2656aac34f13SBarry Smith 2657664954b6SBarry Smith Level: advanced 2658aac34f13SBarry Smith 265995452b02SPatrick Sanan Notes: 266011a5261eSBarry Smith The order of the entries in values is specified by the `MatOption` `MAT_ROW_ORIENTED`. For example, C programs 266111a5261eSBarry Smith may want to use the default `MAT_ROW_ORIENTED` with value `PETSC_TRUE` and use an array v[nnz][bs][bs] where the second index is 26623adadaf3SJed Brown over rows within a block and the last index is over columns within a block row. Fortran programs will likely set 266311a5261eSBarry Smith `MAT_ROW_ORIENTED` with value `PETSC_FALSE` and use a Fortran array v(bs,bs,nnz) in which the first index is over rows within a 26643adadaf3SJed Brown block column and the second index is over columns within a block. 26653adadaf3SJed Brown 2666664954b6SBarry Smith Though this routine has Preallocation() in the name it also sets the exact nonzero locations of the matrix entries and usually the numerical values as well 2667664954b6SBarry Smith 266867be906fSBarry Smith .seealso: `Mat`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIBAIJSetPreallocation()`, `MatCreateAIJ()`, `MPIAIJ`, `MatCreateMPIBAIJWithArrays()`, `MPIBAIJ` 2669aac34f13SBarry Smith @*/ 2670d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIBAIJSetPreallocationCSR(Mat B, PetscInt bs, const PetscInt i[], const PetscInt j[], const PetscScalar v[]) 2671d71ae5a4SJacob Faibussowitsch { 2672aac34f13SBarry Smith PetscFunctionBegin; 26736ba663aaSJed Brown PetscValidHeaderSpecific(B, MAT_CLASSID, 1); 26746ba663aaSJed Brown PetscValidType(B, 1); 26756ba663aaSJed Brown PetscValidLogicalCollectiveInt(B, bs, 2); 2676cac4c232SBarry Smith PetscTryMethod(B, "MatMPIBAIJSetPreallocationCSR_C", (Mat, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[]), (B, bs, i, j, v)); 26773ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2678aac34f13SBarry Smith } 2679aac34f13SBarry Smith 2680d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIBAIJSetPreallocation_MPIBAIJ(Mat B, PetscInt bs, PetscInt d_nz, const PetscInt *d_nnz, PetscInt o_nz, const PetscInt *o_nnz) 2681d71ae5a4SJacob Faibussowitsch { 2682ad79cf63SBarry Smith Mat_MPIBAIJ *b = (Mat_MPIBAIJ *)B->data; 2683535b19f3SBarry Smith PetscInt i; 26845d2a9ed1SStefano Zampini PetscMPIInt size; 2685a23d5eceSKris Buschelman 2686a23d5eceSKris Buschelman PetscFunctionBegin; 2687ad79cf63SBarry Smith if (B->hash_active) { 2688aea10558SJacob Faibussowitsch B->ops[0] = b->cops; 2689ad79cf63SBarry Smith B->hash_active = PETSC_FALSE; 2690ad79cf63SBarry Smith } 2691ad79cf63SBarry Smith if (!B->preallocated) PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)B), bs, &B->bstash)); 26929566063dSJacob Faibussowitsch PetscCall(MatSetBlockSize(B, PetscAbs(bs))); 26939566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->rmap)); 26949566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->cmap)); 26959566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetBlockSize(B->rmap, &bs)); 2696899cda47SBarry Smith 2697a23d5eceSKris Buschelman if (d_nnz) { 2698ad540459SPierre Jolivet for (i = 0; i < B->rmap->n / bs; i++) PetscCheck(d_nnz[i] >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "d_nnz cannot be less than -1: local row %" PetscInt_FMT " value %" PetscInt_FMT, i, d_nnz[i]); 2699a23d5eceSKris Buschelman } 2700a23d5eceSKris Buschelman if (o_nnz) { 2701ad540459SPierre Jolivet for (i = 0; i < B->rmap->n / bs; i++) PetscCheck(o_nnz[i] >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "o_nnz cannot be less than -1: local row %" PetscInt_FMT " value %" PetscInt_FMT, i, o_nnz[i]); 2702a23d5eceSKris Buschelman } 2703a23d5eceSKris Buschelman 2704a23d5eceSKris Buschelman b->bs2 = bs * bs; 2705d0f46423SBarry Smith b->mbs = B->rmap->n / bs; 2706d0f46423SBarry Smith b->nbs = B->cmap->n / bs; 2707d0f46423SBarry Smith b->Mbs = B->rmap->N / bs; 2708d0f46423SBarry Smith b->Nbs = B->cmap->N / bs; 2709a23d5eceSKris Buschelman 2710ad540459SPierre Jolivet for (i = 0; i <= b->size; i++) b->rangebs[i] = B->rmap->range[i] / bs; 2711d0f46423SBarry Smith b->rstartbs = B->rmap->rstart / bs; 2712d0f46423SBarry Smith b->rendbs = B->rmap->rend / bs; 2713d0f46423SBarry Smith b->cstartbs = B->cmap->rstart / bs; 2714d0f46423SBarry Smith b->cendbs = B->cmap->rend / bs; 2715a23d5eceSKris Buschelman 2716cb7b82ddSBarry Smith #if defined(PETSC_USE_CTABLE) 2717eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIDestroy(&b->colmap)); 2718cb7b82ddSBarry Smith #else 27199566063dSJacob Faibussowitsch PetscCall(PetscFree(b->colmap)); 2720cb7b82ddSBarry Smith #endif 27219566063dSJacob Faibussowitsch PetscCall(PetscFree(b->garray)); 27229566063dSJacob Faibussowitsch PetscCall(VecDestroy(&b->lvec)); 27239566063dSJacob Faibussowitsch PetscCall(VecScatterDestroy(&b->Mvctx)); 2724cb7b82ddSBarry Smith 27259566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)B), &size)); 27269566063dSJacob Faibussowitsch PetscCall(MatDestroy(&b->B)); 27279566063dSJacob Faibussowitsch PetscCall(MatCreate(PETSC_COMM_SELF, &b->B)); 27289566063dSJacob Faibussowitsch PetscCall(MatSetSizes(b->B, B->rmap->n, size > 1 ? B->cmap->N : 0, B->rmap->n, size > 1 ? B->cmap->N : 0)); 27299566063dSJacob Faibussowitsch PetscCall(MatSetType(b->B, MATSEQBAIJ)); 2730cb7b82ddSBarry Smith 2731ad79cf63SBarry Smith PetscCall(MatDestroy(&b->A)); 27329566063dSJacob Faibussowitsch PetscCall(MatCreate(PETSC_COMM_SELF, &b->A)); 27339566063dSJacob Faibussowitsch PetscCall(MatSetSizes(b->A, B->rmap->n, B->cmap->n, B->rmap->n, B->cmap->n)); 27349566063dSJacob Faibussowitsch PetscCall(MatSetType(b->A, MATSEQBAIJ)); 2735a23d5eceSKris Buschelman 27369566063dSJacob Faibussowitsch PetscCall(MatSeqBAIJSetPreallocation(b->A, bs, d_nz, d_nnz)); 27379566063dSJacob Faibussowitsch PetscCall(MatSeqBAIJSetPreallocation(b->B, bs, o_nz, o_nnz)); 2738526dfc15SBarry Smith B->preallocated = PETSC_TRUE; 2739cb7b82ddSBarry Smith B->was_assembled = PETSC_FALSE; 2740cb7b82ddSBarry Smith B->assembled = PETSC_FALSE; 27413ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2742a23d5eceSKris Buschelman } 2743a23d5eceSKris Buschelman 27447087cfbeSBarry Smith extern PetscErrorCode MatDiagonalScaleLocal_MPIBAIJ(Mat, Vec); 27457087cfbeSBarry Smith extern PetscErrorCode MatSetHashTableFactor_MPIBAIJ(Mat, PetscReal); 27465bf65638SKris Buschelman 2747d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode MatConvert_MPIBAIJ_MPIAdj(Mat B, MatType newtype, MatReuse reuse, Mat *adj) 2748d71ae5a4SJacob Faibussowitsch { 274982094794SBarry Smith Mat_MPIBAIJ *b = (Mat_MPIBAIJ *)B->data; 275082094794SBarry Smith Mat_SeqBAIJ *d = (Mat_SeqBAIJ *)b->A->data, *o = (Mat_SeqBAIJ *)b->B->data; 275182094794SBarry Smith PetscInt M = B->rmap->n / B->rmap->bs, i, *ii, *jj, cnt, j, k, rstart = B->rmap->rstart / B->rmap->bs; 275282094794SBarry Smith const PetscInt *id = d->i, *jd = d->j, *io = o->i, *jo = o->j, *garray = b->garray; 275382094794SBarry Smith 275482094794SBarry Smith PetscFunctionBegin; 27559566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(M + 1, &ii)); 275682094794SBarry Smith ii[0] = 0; 275782094794SBarry Smith for (i = 0; i < M; i++) { 275808401ef6SPierre Jolivet PetscCheck((id[i + 1] - id[i]) >= 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Indices wrong %" PetscInt_FMT " %" PetscInt_FMT " %" PetscInt_FMT, i, id[i], id[i + 1]); 275908401ef6SPierre Jolivet PetscCheck((io[i + 1] - io[i]) >= 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Indices wrong %" PetscInt_FMT " %" PetscInt_FMT " %" PetscInt_FMT, i, io[i], io[i + 1]); 276082094794SBarry Smith ii[i + 1] = ii[i] + id[i + 1] - id[i] + io[i + 1] - io[i]; 27615ee9ba1cSJed Brown /* remove one from count of matrix has diagonal */ 27625ee9ba1cSJed Brown for (j = id[i]; j < id[i + 1]; j++) { 27639371c9d4SSatish Balay if (jd[j] == i) { 27649371c9d4SSatish Balay ii[i + 1]--; 27659371c9d4SSatish Balay break; 27669371c9d4SSatish Balay } 27675ee9ba1cSJed Brown } 276882094794SBarry Smith } 27699566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(ii[M], &jj)); 277082094794SBarry Smith cnt = 0; 277182094794SBarry Smith for (i = 0; i < M; i++) { 277282094794SBarry Smith for (j = io[i]; j < io[i + 1]; j++) { 277382094794SBarry Smith if (garray[jo[j]] > rstart) break; 277482094794SBarry Smith jj[cnt++] = garray[jo[j]]; 277582094794SBarry Smith } 277682094794SBarry Smith for (k = id[i]; k < id[i + 1]; k++) { 2777ad540459SPierre Jolivet if (jd[k] != i) jj[cnt++] = rstart + jd[k]; 277882094794SBarry Smith } 2779ad540459SPierre Jolivet for (; j < io[i + 1]; j++) jj[cnt++] = garray[jo[j]]; 278082094794SBarry Smith } 27819566063dSJacob Faibussowitsch PetscCall(MatCreateMPIAdj(PetscObjectComm((PetscObject)B), M, B->cmap->N / B->rmap->bs, ii, jj, NULL, adj)); 27823ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 278382094794SBarry Smith } 278482094794SBarry Smith 2785c6db04a5SJed Brown #include <../src/mat/impls/aij/mpi/mpiaij.h> 278662471d69SBarry Smith 2787cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_SeqBAIJ_SeqAIJ(Mat, MatType, MatReuse, Mat *); 2788b2573a8aSBarry Smith 2789d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode MatConvert_MPIBAIJ_MPIAIJ(Mat A, MatType newtype, MatReuse reuse, Mat *newmat) 2790d71ae5a4SJacob Faibussowitsch { 279162471d69SBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 279285a69837SSatish Balay Mat_MPIAIJ *b; 27935f80ce2aSJacob Faibussowitsch Mat B; 279462471d69SBarry Smith 279562471d69SBarry Smith PetscFunctionBegin; 27965f80ce2aSJacob Faibussowitsch PetscCheck(A->assembled, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Matrix must be assembled"); 279762471d69SBarry Smith 27980f6d62edSLisandro Dalcin if (reuse == MAT_REUSE_MATRIX) { 27990f6d62edSLisandro Dalcin B = *newmat; 28000f6d62edSLisandro Dalcin } else { 28019566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)A), &B)); 28029566063dSJacob Faibussowitsch PetscCall(MatSetType(B, MATMPIAIJ)); 28039566063dSJacob Faibussowitsch PetscCall(MatSetSizes(B, A->rmap->n, A->cmap->n, A->rmap->N, A->cmap->N)); 28049566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizes(B, A->rmap->bs, A->cmap->bs)); 28059566063dSJacob Faibussowitsch PetscCall(MatSeqAIJSetPreallocation(B, 0, NULL)); 28069566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(B, 0, NULL, 0, NULL)); 28070f6d62edSLisandro Dalcin } 280862471d69SBarry Smith b = (Mat_MPIAIJ *)B->data; 280962471d69SBarry Smith 28100f6d62edSLisandro Dalcin if (reuse == MAT_REUSE_MATRIX) { 28119566063dSJacob Faibussowitsch PetscCall(MatConvert_SeqBAIJ_SeqAIJ(a->A, MATSEQAIJ, MAT_REUSE_MATRIX, &b->A)); 28129566063dSJacob Faibussowitsch PetscCall(MatConvert_SeqBAIJ_SeqAIJ(a->B, MATSEQAIJ, MAT_REUSE_MATRIX, &b->B)); 28130f6d62edSLisandro Dalcin } else { 28147c612885SStefano Zampini PetscInt *garray = a->garray; 28157c612885SStefano Zampini Mat_SeqAIJ *bB; 28167c612885SStefano Zampini PetscInt bs, nnz; 28179566063dSJacob Faibussowitsch PetscCall(MatDestroy(&b->A)); 28189566063dSJacob Faibussowitsch PetscCall(MatDestroy(&b->B)); 28197c612885SStefano Zampini /* just clear out the data structure */ 28207c612885SStefano Zampini PetscCall(MatDisAssemble_MPIAIJ(B)); 28219566063dSJacob Faibussowitsch PetscCall(MatConvert_SeqBAIJ_SeqAIJ(a->A, MATSEQAIJ, MAT_INITIAL_MATRIX, &b->A)); 28229566063dSJacob Faibussowitsch PetscCall(MatConvert_SeqBAIJ_SeqAIJ(a->B, MATSEQAIJ, MAT_INITIAL_MATRIX, &b->B)); 28237c612885SStefano Zampini 28247c612885SStefano Zampini /* Global numbering for b->B columns */ 28257c612885SStefano Zampini bB = (Mat_SeqAIJ *)b->B->data; 28267c612885SStefano Zampini bs = A->rmap->bs; 28277c612885SStefano Zampini nnz = bB->i[A->rmap->n]; 28287c612885SStefano Zampini for (PetscInt k = 0; k < nnz; k++) { 28297c612885SStefano Zampini PetscInt bj = bB->j[k] / bs; 28307c612885SStefano Zampini PetscInt br = bB->j[k] % bs; 28317c612885SStefano Zampini bB->j[k] = garray[bj] * bs + br; 28327c612885SStefano Zampini } 28330f6d62edSLisandro Dalcin } 28349566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY)); 28359566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY)); 28360f6d62edSLisandro Dalcin 2837511c6705SHong Zhang if (reuse == MAT_INPLACE_MATRIX) { 28389566063dSJacob Faibussowitsch PetscCall(MatHeaderReplace(A, &B)); 283962471d69SBarry Smith } else { 284062471d69SBarry Smith *newmat = B; 284162471d69SBarry Smith } 28423ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 284362471d69SBarry Smith } 284462471d69SBarry Smith 28450bad9183SKris Buschelman /*MC 2846fafad747SKris Buschelman MATMPIBAIJ - MATMPIBAIJ = "mpibaij" - A matrix type to be used for distributed block sparse matrices. 28470bad9183SKris Buschelman 28480bad9183SKris Buschelman Options Database Keys: 284911a5261eSBarry Smith + -mat_type mpibaij - sets the matrix type to `MATMPIBAIJ` during a call to `MatSetFromOptions()` 28508c07d4e3SBarry Smith . -mat_block_size <bs> - set the blocksize used to store the matrix 28516679dcc1SBarry Smith . -mat_baij_mult_version version - indicate the version of the matrix-vector product to use (0 often indicates using BLAS) 285267b8a455SSatish Balay - -mat_use_hash_table <fact> - set hash table factor 28530bad9183SKris Buschelman 28540bad9183SKris Buschelman Level: beginner 28550cd7f59aSBarry Smith 285611a5261eSBarry Smith Note: 28575e0ad47dSPierre Jolivet `MatSetOption(A, MAT_STRUCTURE_ONLY, PETSC_TRUE)` may be called for this matrix type. In this no 285811a5261eSBarry Smith space is allocated for the nonzero entries and any entries passed with `MatSetValues()` are ignored 28590bad9183SKris Buschelman 28605e0ad47dSPierre Jolivet .seealso: `Mat`, `MATBAIJ`, `MATSEQBAIJ`, `MatCreateBAIJ` 28610bad9183SKris Buschelman M*/ 28620bad9183SKris Buschelman 2863cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIBAIJ_MPIBSTRM(Mat, MatType, MatReuse, Mat *); 2864c0cdd4a1SDahai Guo 2865d71ae5a4SJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatCreate_MPIBAIJ(Mat B) 2866d71ae5a4SJacob Faibussowitsch { 2867273d9f13SBarry Smith Mat_MPIBAIJ *b; 286894ae4db5SBarry Smith PetscBool flg = PETSC_FALSE; 2869273d9f13SBarry Smith 2870273d9f13SBarry Smith PetscFunctionBegin; 28714dfa11a4SJacob Faibussowitsch PetscCall(PetscNew(&b)); 287282502324SSatish Balay B->data = (void *)b; 2873aea10558SJacob Faibussowitsch B->ops[0] = MatOps_Values; 2874273d9f13SBarry Smith B->assembled = PETSC_FALSE; 2875273d9f13SBarry Smith 2876273d9f13SBarry Smith B->insertmode = NOT_SET_VALUES; 28779566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)B), &b->rank)); 28789566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)B), &b->size)); 2879273d9f13SBarry Smith 2880273d9f13SBarry Smith /* build local table of row and column ownerships */ 28819566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(b->size + 1, &b->rangebs)); 2882273d9f13SBarry Smith 2883273d9f13SBarry Smith /* build cache for off array entries formed */ 28849566063dSJacob Faibussowitsch PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)B), 1, &B->stash)); 288526fbe8dcSKarl Rupp 2886273d9f13SBarry Smith b->donotstash = PETSC_FALSE; 28870298fd71SBarry Smith b->colmap = NULL; 28880298fd71SBarry Smith b->garray = NULL; 2889273d9f13SBarry Smith b->roworiented = PETSC_TRUE; 2890273d9f13SBarry Smith 2891273d9f13SBarry Smith /* stuff used in block assembly */ 2892f4259b30SLisandro Dalcin b->barray = NULL; 2893273d9f13SBarry Smith 2894273d9f13SBarry Smith /* stuff used for matrix vector multiply */ 2895f4259b30SLisandro Dalcin b->lvec = NULL; 2896f4259b30SLisandro Dalcin b->Mvctx = NULL; 2897273d9f13SBarry Smith 2898273d9f13SBarry Smith /* stuff for MatGetRow() */ 2899f4259b30SLisandro Dalcin b->rowindices = NULL; 2900f4259b30SLisandro Dalcin b->rowvalues = NULL; 2901273d9f13SBarry Smith b->getrowactive = PETSC_FALSE; 2902273d9f13SBarry Smith 2903273d9f13SBarry Smith /* hash table stuff */ 2904f4259b30SLisandro Dalcin b->ht = NULL; 2905f4259b30SLisandro Dalcin b->hd = NULL; 2906273d9f13SBarry Smith b->ht_size = 0; 2907273d9f13SBarry Smith b->ht_flag = PETSC_FALSE; 2908273d9f13SBarry Smith b->ht_fact = 0; 2909273d9f13SBarry Smith b->ht_total_ct = 0; 2910273d9f13SBarry Smith b->ht_insert_ct = 0; 2911273d9f13SBarry Smith 29127dae84e0SHong Zhang /* stuff for MatCreateSubMatrices_MPIBAIJ_local() */ 29137a868f3eSHong Zhang b->ijonly = PETSC_FALSE; 29147a868f3eSHong Zhang 29159566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpibaij_mpiadj_C", MatConvert_MPIBAIJ_MPIAdj)); 29169566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpibaij_mpiaij_C", MatConvert_MPIBAIJ_MPIAIJ)); 29179566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpibaij_mpisbaij_C", MatConvert_MPIBAIJ_MPISBAIJ)); 29187ea3e4caSstefano_zampini #if defined(PETSC_HAVE_HYPRE) 29199566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpibaij_hypre_C", MatConvert_AIJ_HYPRE)); 29207ea3e4caSstefano_zampini #endif 29219566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatStoreValues_C", MatStoreValues_MPIBAIJ)); 29229566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatRetrieveValues_C", MatRetrieveValues_MPIBAIJ)); 29239566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMPIBAIJSetPreallocation_C", MatMPIBAIJSetPreallocation_MPIBAIJ)); 29249566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMPIBAIJSetPreallocationCSR_C", MatMPIBAIJSetPreallocationCSR_MPIBAIJ)); 29259566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatDiagonalScaleLocal_C", MatDiagonalScaleLocal_MPIBAIJ)); 29269566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatSetHashTableFactor_C", MatSetHashTableFactor_MPIBAIJ)); 29279566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpibaij_is_C", MatConvert_XAIJ_IS)); 29289566063dSJacob Faibussowitsch PetscCall(PetscObjectChangeTypeName((PetscObject)B, MATMPIBAIJ)); 292994ae4db5SBarry Smith 2930d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)B), NULL, "Options for loading MPIBAIJ matrix 1", "Mat"); 29319566063dSJacob Faibussowitsch PetscCall(PetscOptionsName("-mat_use_hash_table", "Use hash table to save time in constructing matrix", "MatSetOption", &flg)); 293294ae4db5SBarry Smith if (flg) { 293394ae4db5SBarry Smith PetscReal fact = 1.39; 29349566063dSJacob Faibussowitsch PetscCall(MatSetOption(B, MAT_USE_HASH_TABLE, PETSC_TRUE)); 29359566063dSJacob Faibussowitsch PetscCall(PetscOptionsReal("-mat_use_hash_table", "Use hash table factor", "MatMPIBAIJSetHashTableFactor", fact, &fact, NULL)); 293694ae4db5SBarry Smith if (fact <= 1.0) fact = 1.39; 29379566063dSJacob Faibussowitsch PetscCall(MatMPIBAIJSetHashTableFactor(B, fact)); 29389566063dSJacob Faibussowitsch PetscCall(PetscInfo(B, "Hash table Factor used %5.2g\n", (double)fact)); 293994ae4db5SBarry Smith } 2940d0609cedSBarry Smith PetscOptionsEnd(); 29413ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2942273d9f13SBarry Smith } 2943273d9f13SBarry Smith 2944209238afSKris Buschelman /*MC 2945002d173eSKris Buschelman MATBAIJ - MATBAIJ = "baij" - A matrix type to be used for block sparse matrices. 2946209238afSKris Buschelman 294711a5261eSBarry Smith This matrix type is identical to `MATSEQBAIJ` when constructed with a single process communicator, 294811a5261eSBarry Smith and `MATMPIBAIJ` otherwise. 2949209238afSKris Buschelman 2950209238afSKris Buschelman Options Database Keys: 295111a5261eSBarry Smith . -mat_type baij - sets the matrix type to `MATBAIJ` during a call to `MatSetFromOptions()` 2952209238afSKris Buschelman 2953209238afSKris Buschelman Level: beginner 2954209238afSKris Buschelman 295567be906fSBarry Smith .seealso: `Mat`, `MatCreateBAIJ()`, `MATSEQBAIJ`, `MATMPIBAIJ`, `MatMPIBAIJSetPreallocation()`, `MatMPIBAIJSetPreallocationCSR()` 2956209238afSKris Buschelman M*/ 2957209238afSKris Buschelman 2958273d9f13SBarry Smith /*@C 295911a5261eSBarry Smith MatMPIBAIJSetPreallocation - Allocates memory for a sparse parallel matrix in `MATMPIBAIJ` format 296067be906fSBarry Smith (block compressed row). 2961273d9f13SBarry Smith 2962c3339decSBarry Smith Collective 2963273d9f13SBarry Smith 2964273d9f13SBarry Smith Input Parameters: 29651c4f3114SJed Brown + B - the matrix 296611a5261eSBarry Smith . bs - size of block, the blocks are ALWAYS square. One can use `MatSetBlockSizes()` to set a different row and column blocksize but the row 296767be906fSBarry Smith blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with `MatCreateVecs()` 2968273d9f13SBarry Smith . d_nz - number of block nonzeros per block row in diagonal portion of local 2969273d9f13SBarry Smith submatrix (same for all local rows) 2970273d9f13SBarry Smith . d_nnz - array containing the number of block nonzeros in the various block rows 2971273d9f13SBarry Smith of the in diagonal portion of the local (possibly different for each block 297267be906fSBarry Smith row) or `NULL`. If you plan to factor the matrix you must leave room for the diagonal entry and 297395742e49SBarry Smith set it even if it is zero. 2974273d9f13SBarry Smith . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 2975273d9f13SBarry Smith submatrix (same for all local rows). 2976273d9f13SBarry Smith - o_nnz - array containing the number of nonzeros in the various block rows of the 2977273d9f13SBarry Smith off-diagonal portion of the local submatrix (possibly different for 297867be906fSBarry Smith each block row) or `NULL`. 2979273d9f13SBarry Smith 298049a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 2981273d9f13SBarry Smith 2982273d9f13SBarry Smith Options Database Keys: 29838c07d4e3SBarry Smith + -mat_block_size - size of the blocks to use 298467b8a455SSatish Balay - -mat_use_hash_table <fact> - set hash table factor 2985273d9f13SBarry Smith 298667be906fSBarry Smith Level: intermediate 298767be906fSBarry Smith 2988273d9f13SBarry Smith Notes: 298967be906fSBarry Smith For good matrix assembly performance 299067be906fSBarry Smith the user should preallocate the matrix storage by setting the parameters 299167be906fSBarry Smith `d_nz` (or `d_nnz`) and `o_nz` (or `o_nnz`). By setting these parameters accurately, 299267be906fSBarry Smith performance can be increased by more than a factor of 50. 299367be906fSBarry Smith 299411a5261eSBarry Smith If `PETSC_DECIDE` or `PETSC_DETERMINE` is used for a particular argument on one processor 2995273d9f13SBarry Smith than it must be used on all processors that share the object for that argument. 2996273d9f13SBarry Smith 2997273d9f13SBarry Smith Storage Information: 2998273d9f13SBarry Smith For a square global matrix we define each processor's diagonal portion 2999273d9f13SBarry Smith to be its local rows and the corresponding columns (a square submatrix); 3000273d9f13SBarry Smith each processor's off-diagonal portion encompasses the remainder of the 3001273d9f13SBarry Smith local matrix (a rectangular submatrix). 3002273d9f13SBarry Smith 3003273d9f13SBarry Smith The user can specify preallocated storage for the diagonal part of 300467be906fSBarry Smith the local submatrix with either `d_nz` or `d_nnz` (not both). Set 300567be906fSBarry Smith `d_nz` = `PETSC_DEFAULT` and `d_nnz` = `NULL` for PETSc to control dynamic 3006273d9f13SBarry Smith memory allocation. Likewise, specify preallocated storage for the 300767be906fSBarry Smith off-diagonal part of the local submatrix with `o_nz` or `o_nnz` (not both). 3008273d9f13SBarry Smith 3009273d9f13SBarry Smith Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 3010273d9f13SBarry Smith the figure below we depict these three local rows and all columns (0-11). 3011273d9f13SBarry Smith 3012273d9f13SBarry Smith .vb 3013273d9f13SBarry Smith 0 1 2 3 4 5 6 7 8 9 10 11 3014a4b1a0f6SJed Brown -------------------------- 3015273d9f13SBarry Smith row 3 |o o o d d d o o o o o o 3016273d9f13SBarry Smith row 4 |o o o d d d o o o o o o 3017273d9f13SBarry Smith row 5 |o o o d d d o o o o o o 3018a4b1a0f6SJed Brown -------------------------- 3019273d9f13SBarry Smith .ve 3020273d9f13SBarry Smith 3021273d9f13SBarry Smith Thus, any entries in the d locations are stored in the d (diagonal) 3022273d9f13SBarry Smith submatrix, and any entries in the o locations are stored in the 3023273d9f13SBarry Smith o (off-diagonal) submatrix. Note that the d and the o submatrices are 302411a5261eSBarry Smith stored simply in the `MATSEQBAIJ` format for compressed row storage. 3025273d9f13SBarry Smith 302667be906fSBarry Smith Now `d_nz` should indicate the number of block nonzeros per row in the d matrix, 302767be906fSBarry Smith and `o_nz` should indicate the number of block nonzeros per row in the o matrix. 3028273d9f13SBarry Smith In general, for PDE problems in which most nonzeros are near the diagonal, 302920f4b53cSBarry Smith one expects `d_nz` >> `o_nz`. 3030273d9f13SBarry Smith 303111a5261eSBarry Smith You can call `MatGetInfo()` to get information on how effective the preallocation was; 3032aa95bbe8SBarry Smith for example the fields mallocs,nz_allocated,nz_used,nz_unneeded; 303367be906fSBarry Smith You can also run with the option `-info` and look for messages with the string 3034aa95bbe8SBarry Smith malloc in them to see if additional memory allocation was needed. 3035aa95bbe8SBarry Smith 303667be906fSBarry Smith .seealso: `Mat`, `MATMPIBAIJ`, `MatCreate()`, `MatCreateSeqBAIJ()`, `MatSetValues()`, `MatCreateBAIJ()`, `MatMPIBAIJSetPreallocationCSR()`, `PetscSplitOwnership()` 3037273d9f13SBarry Smith @*/ 3038d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIBAIJSetPreallocation(Mat B, PetscInt bs, PetscInt d_nz, const PetscInt d_nnz[], PetscInt o_nz, const PetscInt o_nnz[]) 3039d71ae5a4SJacob Faibussowitsch { 3040273d9f13SBarry Smith PetscFunctionBegin; 30416ba663aaSJed Brown PetscValidHeaderSpecific(B, MAT_CLASSID, 1); 30426ba663aaSJed Brown PetscValidType(B, 1); 30436ba663aaSJed Brown PetscValidLogicalCollectiveInt(B, bs, 2); 3044cac4c232SBarry Smith PetscTryMethod(B, "MatMPIBAIJSetPreallocation_C", (Mat, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[]), (B, bs, d_nz, d_nnz, o_nz, o_nnz)); 30453ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3046273d9f13SBarry Smith } 3047273d9f13SBarry Smith 304879bdfe76SSatish Balay /*@C 304911a5261eSBarry Smith MatCreateBAIJ - Creates a sparse parallel matrix in `MATBAIJ` format 305067be906fSBarry Smith (block compressed row). 305179bdfe76SSatish Balay 3052d083f849SBarry Smith Collective 3053db81eaa0SLois Curfman McInnes 305479bdfe76SSatish Balay Input Parameters: 3055db81eaa0SLois Curfman McInnes + comm - MPI communicator 305611a5261eSBarry Smith . bs - size of block, the blocks are ALWAYS square. One can use `MatSetBlockSizes()` to set a different row and column blocksize but the row 305711a5261eSBarry Smith blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with `MatCreateVecs()` 305811a5261eSBarry Smith . m - number of local rows (or `PETSC_DECIDE` to have calculated if M is given) 305992e8d321SLois Curfman McInnes This value should be the same as the local size used in creating the 306092e8d321SLois Curfman McInnes y vector for the matrix-vector product y = Ax. 306111a5261eSBarry Smith . n - number of local columns (or `PETSC_DECIDE` to have calculated if N is given) 306292e8d321SLois Curfman McInnes This value should be the same as the local size used in creating the 306392e8d321SLois Curfman McInnes x vector for the matrix-vector product y = Ax. 306411a5261eSBarry Smith . M - number of global rows (or `PETSC_DETERMINE` to have calculated if m is given) 306511a5261eSBarry Smith . N - number of global columns (or `PETSC_DETERMINE` to have calculated if n is given) 306647a75d0bSBarry Smith . d_nz - number of nonzero blocks per block row in diagonal portion of local 306779bdfe76SSatish Balay submatrix (same for all local rows) 306847a75d0bSBarry Smith . d_nnz - array containing the number of nonzero blocks in the various block rows 306992e8d321SLois Curfman McInnes of the in diagonal portion of the local (possibly different for each block 30700298fd71SBarry Smith row) or NULL. If you plan to factor the matrix you must leave room for the diagonal entry 307195742e49SBarry Smith and set it even if it is zero. 307247a75d0bSBarry Smith . o_nz - number of nonzero blocks per block row in the off-diagonal portion of local 307379bdfe76SSatish Balay submatrix (same for all local rows). 307447a75d0bSBarry Smith - o_nnz - array containing the number of nonzero blocks in the various block rows of the 307592e8d321SLois Curfman McInnes off-diagonal portion of the local submatrix (possibly different for 30760298fd71SBarry Smith each block row) or NULL. 307779bdfe76SSatish Balay 307879bdfe76SSatish Balay Output Parameter: 307979bdfe76SSatish Balay . A - the matrix 308079bdfe76SSatish Balay 3081db81eaa0SLois Curfman McInnes Options Database Keys: 30828c07d4e3SBarry Smith + -mat_block_size - size of the blocks to use 308367b8a455SSatish Balay - -mat_use_hash_table <fact> - set hash table factor 30843ffaccefSLois Curfman McInnes 308567be906fSBarry Smith Level: intermediate 308667be906fSBarry Smith 308767be906fSBarry Smith Notes: 308867be906fSBarry Smith For good matrix assembly performance 308967be906fSBarry Smith the user should preallocate the matrix storage by setting the parameters 309067be906fSBarry Smith `d_nz` (or `d_nnz`) and `o_nz` (or `o_nnz`). By setting these parameters accurately, 309167be906fSBarry Smith performance can be increased by more than a factor of 50. 309267be906fSBarry Smith 309311a5261eSBarry Smith It is recommended that one use the `MatCreate()`, `MatSetType()` and/or `MatSetFromOptions()`, 3094f6f02116SRichard Tran Mills MatXXXXSetPreallocation() paradigm instead of this routine directly. 309511a5261eSBarry Smith [MatXXXXSetPreallocation() is, for example, `MatSeqBAIJSetPreallocation()`] 3096175b88e8SBarry Smith 309749a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 309849a6f317SBarry Smith 309947a75d0bSBarry Smith A nonzero block is any block that as 1 or more nonzeros in it 310047a75d0bSBarry Smith 310179bdfe76SSatish Balay The user MUST specify either the local or global matrix dimensions 310279bdfe76SSatish Balay (possibly both). 310379bdfe76SSatish Balay 310411a5261eSBarry Smith If `PETSC_DECIDE` or `PETSC_DETERMINE` is used for a particular argument on one processor 3105be79a94dSBarry Smith than it must be used on all processors that share the object for that argument. 3106be79a94dSBarry Smith 310779bdfe76SSatish Balay Storage Information: 310879bdfe76SSatish Balay For a square global matrix we define each processor's diagonal portion 310979bdfe76SSatish Balay to be its local rows and the corresponding columns (a square submatrix); 311079bdfe76SSatish Balay each processor's off-diagonal portion encompasses the remainder of the 311179bdfe76SSatish Balay local matrix (a rectangular submatrix). 311279bdfe76SSatish Balay 311379bdfe76SSatish Balay The user can specify preallocated storage for the diagonal part of 311479bdfe76SSatish Balay the local submatrix with either d_nz or d_nnz (not both). Set 311567be906fSBarry Smith `d_nz` = `PETSC_DEFAULT` and `d_nnz` = `NULL` for PETSc to control dynamic 311679bdfe76SSatish Balay memory allocation. Likewise, specify preallocated storage for the 311767be906fSBarry Smith off-diagonal part of the local submatrix with `o_nz` or `o_nnz` (not both). 311879bdfe76SSatish Balay 311979bdfe76SSatish Balay Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 312079bdfe76SSatish Balay the figure below we depict these three local rows and all columns (0-11). 312179bdfe76SSatish Balay 3122db81eaa0SLois Curfman McInnes .vb 3123db81eaa0SLois Curfman McInnes 0 1 2 3 4 5 6 7 8 9 10 11 3124a4b1a0f6SJed Brown -------------------------- 3125db81eaa0SLois Curfman McInnes row 3 |o o o d d d o o o o o o 3126db81eaa0SLois Curfman McInnes row 4 |o o o d d d o o o o o o 3127db81eaa0SLois Curfman McInnes row 5 |o o o d d d o o o o o o 3128a4b1a0f6SJed Brown -------------------------- 3129db81eaa0SLois Curfman McInnes .ve 313079bdfe76SSatish Balay 313179bdfe76SSatish Balay Thus, any entries in the d locations are stored in the d (diagonal) 313279bdfe76SSatish Balay submatrix, and any entries in the o locations are stored in the 313379bdfe76SSatish Balay o (off-diagonal) submatrix. Note that the d and the o submatrices are 313411a5261eSBarry Smith stored simply in the `MATSEQBAIJ` format for compressed row storage. 313579bdfe76SSatish Balay 313667be906fSBarry Smith Now `d_nz` should indicate the number of block nonzeros per row in the d matrix, 313767be906fSBarry Smith and `o_nz` should indicate the number of block nonzeros per row in the o matrix. 313879bdfe76SSatish Balay In general, for PDE problems in which most nonzeros are near the diagonal, 313920f4b53cSBarry Smith one expects `d_nz` >> `o_nz`. 314079bdfe76SSatish Balay 314167be906fSBarry Smith .seealso: `Mat`, `MatCreate()`, `MatCreateSeqBAIJ()`, `MatSetValues()`, `MatCreateBAIJ()`, `MatMPIBAIJSetPreallocation()`, `MatMPIBAIJSetPreallocationCSR()` 314279bdfe76SSatish Balay @*/ 3143d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateBAIJ(MPI_Comm comm, PetscInt bs, PetscInt m, PetscInt n, PetscInt M, PetscInt N, PetscInt d_nz, const PetscInt d_nnz[], PetscInt o_nz, const PetscInt o_nnz[], Mat *A) 3144d71ae5a4SJacob Faibussowitsch { 3145b24ad042SBarry Smith PetscMPIInt size; 314679bdfe76SSatish Balay 3147d64ed03dSBarry Smith PetscFunctionBegin; 31489566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, A)); 31499566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*A, m, n, M, N)); 31509566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 3151273d9f13SBarry Smith if (size > 1) { 31529566063dSJacob Faibussowitsch PetscCall(MatSetType(*A, MATMPIBAIJ)); 31539566063dSJacob Faibussowitsch PetscCall(MatMPIBAIJSetPreallocation(*A, bs, d_nz, d_nnz, o_nz, o_nnz)); 3154273d9f13SBarry Smith } else { 31559566063dSJacob Faibussowitsch PetscCall(MatSetType(*A, MATSEQBAIJ)); 31569566063dSJacob Faibussowitsch PetscCall(MatSeqBAIJSetPreallocation(*A, bs, d_nz, d_nnz)); 31573914022bSBarry Smith } 31583ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 315979bdfe76SSatish Balay } 3160026e39d0SSatish Balay 3161d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatDuplicate_MPIBAIJ(Mat matin, MatDuplicateOption cpvalues, Mat *newmat) 3162d71ae5a4SJacob Faibussowitsch { 31630ac07820SSatish Balay Mat mat; 31640ac07820SSatish Balay Mat_MPIBAIJ *a, *oldmat = (Mat_MPIBAIJ *)matin->data; 3165b24ad042SBarry Smith PetscInt len = 0; 31660ac07820SSatish Balay 3167d64ed03dSBarry Smith PetscFunctionBegin; 3168f4259b30SLisandro Dalcin *newmat = NULL; 31699566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)matin), &mat)); 31709566063dSJacob Faibussowitsch PetscCall(MatSetSizes(mat, matin->rmap->n, matin->cmap->n, matin->rmap->N, matin->cmap->N)); 31719566063dSJacob Faibussowitsch PetscCall(MatSetType(mat, ((PetscObject)matin)->type_name)); 31727fff6886SHong Zhang 3173d5f3da31SBarry Smith mat->factortype = matin->factortype; 3174273d9f13SBarry Smith mat->preallocated = PETSC_TRUE; 31750ac07820SSatish Balay mat->assembled = PETSC_TRUE; 31767fff6886SHong Zhang mat->insertmode = NOT_SET_VALUES; 31777fff6886SHong Zhang 3178273d9f13SBarry Smith a = (Mat_MPIBAIJ *)mat->data; 3179d0f46423SBarry Smith mat->rmap->bs = matin->rmap->bs; 31800ac07820SSatish Balay a->bs2 = oldmat->bs2; 31810ac07820SSatish Balay a->mbs = oldmat->mbs; 31820ac07820SSatish Balay a->nbs = oldmat->nbs; 31830ac07820SSatish Balay a->Mbs = oldmat->Mbs; 31840ac07820SSatish Balay a->Nbs = oldmat->Nbs; 31850ac07820SSatish Balay 31869566063dSJacob Faibussowitsch PetscCall(PetscLayoutReference(matin->rmap, &mat->rmap)); 31879566063dSJacob Faibussowitsch PetscCall(PetscLayoutReference(matin->cmap, &mat->cmap)); 3188899cda47SBarry Smith 31890ac07820SSatish Balay a->size = oldmat->size; 31900ac07820SSatish Balay a->rank = oldmat->rank; 3191aef5e8e0SSatish Balay a->donotstash = oldmat->donotstash; 3192aef5e8e0SSatish Balay a->roworiented = oldmat->roworiented; 3193f4259b30SLisandro Dalcin a->rowindices = NULL; 3194f4259b30SLisandro Dalcin a->rowvalues = NULL; 31950ac07820SSatish Balay a->getrowactive = PETSC_FALSE; 3196f4259b30SLisandro Dalcin a->barray = NULL; 3197899cda47SBarry Smith a->rstartbs = oldmat->rstartbs; 3198899cda47SBarry Smith a->rendbs = oldmat->rendbs; 3199899cda47SBarry Smith a->cstartbs = oldmat->cstartbs; 3200899cda47SBarry Smith a->cendbs = oldmat->cendbs; 32010ac07820SSatish Balay 3202133cdb44SSatish Balay /* hash table stuff */ 3203f4259b30SLisandro Dalcin a->ht = NULL; 3204f4259b30SLisandro Dalcin a->hd = NULL; 3205133cdb44SSatish Balay a->ht_size = 0; 3206133cdb44SSatish Balay a->ht_flag = oldmat->ht_flag; 320725fdafccSSatish Balay a->ht_fact = oldmat->ht_fact; 3208133cdb44SSatish Balay a->ht_total_ct = 0; 3209133cdb44SSatish Balay a->ht_insert_ct = 0; 3210133cdb44SSatish Balay 32119566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(a->rangebs, oldmat->rangebs, a->size + 1)); 32120ac07820SSatish Balay if (oldmat->colmap) { 3213aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 3214eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIDuplicate(oldmat->colmap, &a->colmap)); 321548e59246SSatish Balay #else 32169566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(a->Nbs, &a->colmap)); 32179566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(a->colmap, oldmat->colmap, a->Nbs)); 321848e59246SSatish Balay #endif 3219f4259b30SLisandro Dalcin } else a->colmap = NULL; 32204beb1cfeSHong Zhang 32210ac07820SSatish Balay if (oldmat->garray && (len = ((Mat_SeqBAIJ *)(oldmat->B->data))->nbs)) { 32229566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(len, &a->garray)); 32239566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(a->garray, oldmat->garray, len)); 3224f4259b30SLisandro Dalcin } else a->garray = NULL; 32250ac07820SSatish Balay 32269566063dSJacob Faibussowitsch PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)matin), matin->rmap->bs, &mat->bstash)); 32279566063dSJacob Faibussowitsch PetscCall(VecDuplicate(oldmat->lvec, &a->lvec)); 32289566063dSJacob Faibussowitsch PetscCall(VecScatterCopy(oldmat->Mvctx, &a->Mvctx)); 32297fff6886SHong Zhang 32309566063dSJacob Faibussowitsch PetscCall(MatDuplicate(oldmat->A, cpvalues, &a->A)); 32319566063dSJacob Faibussowitsch PetscCall(MatDuplicate(oldmat->B, cpvalues, &a->B)); 32329566063dSJacob Faibussowitsch PetscCall(PetscFunctionListDuplicate(((PetscObject)matin)->qlist, &((PetscObject)mat)->qlist)); 32330ac07820SSatish Balay *newmat = mat; 32343ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 32350ac07820SSatish Balay } 323657b952d6SSatish Balay 3237618cc2edSLisandro Dalcin /* Used for both MPIBAIJ and MPISBAIJ matrices */ 3238d71ae5a4SJacob Faibussowitsch PetscErrorCode MatLoad_MPIBAIJ_Binary(Mat mat, PetscViewer viewer) 3239d71ae5a4SJacob Faibussowitsch { 3240b51a4376SLisandro Dalcin PetscInt header[4], M, N, nz, bs, m, n, mbs, nbs, rows, cols, sum, i, j, k; 3241b51a4376SLisandro Dalcin PetscInt *rowidxs, *colidxs, rs, cs, ce; 3242b51a4376SLisandro Dalcin PetscScalar *matvals; 3243b51a4376SLisandro Dalcin 3244b51a4376SLisandro Dalcin PetscFunctionBegin; 32459566063dSJacob Faibussowitsch PetscCall(PetscViewerSetUp(viewer)); 3246b51a4376SLisandro Dalcin 3247b51a4376SLisandro Dalcin /* read in matrix header */ 32489566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryRead(viewer, header, 4, NULL, PETSC_INT)); 32495f80ce2aSJacob Faibussowitsch PetscCheck(header[0] == MAT_FILE_CLASSID, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Not a matrix object in file"); 32509371c9d4SSatish Balay M = header[1]; 32519371c9d4SSatish Balay N = header[2]; 32529371c9d4SSatish Balay nz = header[3]; 32535f80ce2aSJacob Faibussowitsch PetscCheck(M >= 0, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Matrix row size (%" PetscInt_FMT ") in file is negative", M); 32545f80ce2aSJacob Faibussowitsch PetscCheck(N >= 0, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Matrix column size (%" PetscInt_FMT ") in file is negative", N); 32555f80ce2aSJacob Faibussowitsch PetscCheck(nz >= 0, PETSC_COMM_SELF, PETSC_ERR_FILE_UNEXPECTED, "Matrix stored in special format on disk, cannot load as MPIBAIJ"); 3256b51a4376SLisandro Dalcin 3257b51a4376SLisandro Dalcin /* set block sizes from the viewer's .info file */ 32589566063dSJacob Faibussowitsch PetscCall(MatLoad_Binary_BlockSizes(mat, viewer)); 3259618cc2edSLisandro Dalcin /* set local sizes if not set already */ 3260618cc2edSLisandro Dalcin if (mat->rmap->n < 0 && M == N) mat->rmap->n = mat->cmap->n; 3261618cc2edSLisandro Dalcin if (mat->cmap->n < 0 && M == N) mat->cmap->n = mat->rmap->n; 3262b51a4376SLisandro Dalcin /* set global sizes if not set already */ 3263b51a4376SLisandro Dalcin if (mat->rmap->N < 0) mat->rmap->N = M; 3264b51a4376SLisandro Dalcin if (mat->cmap->N < 0) mat->cmap->N = N; 32659566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(mat->rmap)); 32669566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(mat->cmap)); 3267b51a4376SLisandro Dalcin 3268b51a4376SLisandro Dalcin /* check if the matrix sizes are correct */ 32699566063dSJacob Faibussowitsch PetscCall(MatGetSize(mat, &rows, &cols)); 32705f80ce2aSJacob Faibussowitsch PetscCheck(M == rows && N == cols, PETSC_COMM_SELF, PETSC_ERR_FILE_UNEXPECTED, "Matrix in file of different sizes (%" PetscInt_FMT ", %" PetscInt_FMT ") than the input matrix (%" PetscInt_FMT ", %" PetscInt_FMT ")", M, N, rows, cols); 32719566063dSJacob Faibussowitsch PetscCall(MatGetBlockSize(mat, &bs)); 32729566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(mat, &m, &n)); 32739566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetRange(mat->rmap, &rs, NULL)); 32749566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetRange(mat->cmap, &cs, &ce)); 32759371c9d4SSatish Balay mbs = m / bs; 32769371c9d4SSatish Balay nbs = n / bs; 3277b51a4376SLisandro Dalcin 3278b51a4376SLisandro Dalcin /* read in row lengths and build row indices */ 32799566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m + 1, &rowidxs)); 32809566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryReadAll(viewer, rowidxs + 1, m, PETSC_DECIDE, M, PETSC_INT)); 32819371c9d4SSatish Balay rowidxs[0] = 0; 32829371c9d4SSatish Balay for (i = 0; i < m; i++) rowidxs[i + 1] += rowidxs[i]; 32831c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&rowidxs[m], &sum, 1, MPIU_INT, MPI_SUM, PetscObjectComm((PetscObject)viewer))); 32845f80ce2aSJacob Faibussowitsch PetscCheck(sum == nz, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Inconsistent matrix data in file: nonzeros = %" PetscInt_FMT ", sum-row-lengths = %" PetscInt_FMT, nz, sum); 3285b51a4376SLisandro Dalcin 3286b51a4376SLisandro Dalcin /* read in column indices and matrix values */ 32879566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(rowidxs[m], &colidxs, rowidxs[m], &matvals)); 32889566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryReadAll(viewer, colidxs, rowidxs[m], PETSC_DETERMINE, PETSC_DETERMINE, PETSC_INT)); 32899566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryReadAll(viewer, matvals, rowidxs[m], PETSC_DETERMINE, PETSC_DETERMINE, PETSC_SCALAR)); 3290b51a4376SLisandro Dalcin 3291b51a4376SLisandro Dalcin { /* preallocate matrix storage */ 3292b51a4376SLisandro Dalcin PetscBT bt; /* helper bit set to count diagonal nonzeros */ 3293b51a4376SLisandro Dalcin PetscHSetI ht; /* helper hash set to count off-diagonal nonzeros */ 3294618cc2edSLisandro Dalcin PetscBool sbaij, done; 3295b51a4376SLisandro Dalcin PetscInt *d_nnz, *o_nnz; 3296b51a4376SLisandro Dalcin 32979566063dSJacob Faibussowitsch PetscCall(PetscBTCreate(nbs, &bt)); 32989566063dSJacob Faibussowitsch PetscCall(PetscHSetICreate(&ht)); 32999566063dSJacob Faibussowitsch PetscCall(PetscCalloc2(mbs, &d_nnz, mbs, &o_nnz)); 33009566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)mat, MATMPISBAIJ, &sbaij)); 3301b51a4376SLisandro Dalcin for (i = 0; i < mbs; i++) { 33029566063dSJacob Faibussowitsch PetscCall(PetscBTMemzero(nbs, bt)); 33039566063dSJacob Faibussowitsch PetscCall(PetscHSetIClear(ht)); 3304618cc2edSLisandro Dalcin for (k = 0; k < bs; k++) { 3305618cc2edSLisandro Dalcin PetscInt row = bs * i + k; 3306618cc2edSLisandro Dalcin for (j = rowidxs[row]; j < rowidxs[row + 1]; j++) { 3307618cc2edSLisandro Dalcin PetscInt col = colidxs[j]; 3308618cc2edSLisandro Dalcin if (!sbaij || col >= row) { 3309618cc2edSLisandro Dalcin if (col >= cs && col < ce) { 3310618cc2edSLisandro Dalcin if (!PetscBTLookupSet(bt, (col - cs) / bs)) d_nnz[i]++; 3311b51a4376SLisandro Dalcin } else { 33129566063dSJacob Faibussowitsch PetscCall(PetscHSetIQueryAdd(ht, col / bs, &done)); 3313b51a4376SLisandro Dalcin if (done) o_nnz[i]++; 3314b51a4376SLisandro Dalcin } 3315b51a4376SLisandro Dalcin } 3316618cc2edSLisandro Dalcin } 3317618cc2edSLisandro Dalcin } 3318618cc2edSLisandro Dalcin } 33199566063dSJacob Faibussowitsch PetscCall(PetscBTDestroy(&bt)); 33209566063dSJacob Faibussowitsch PetscCall(PetscHSetIDestroy(&ht)); 33219566063dSJacob Faibussowitsch PetscCall(MatMPIBAIJSetPreallocation(mat, bs, 0, d_nnz, 0, o_nnz)); 33229566063dSJacob Faibussowitsch PetscCall(MatMPISBAIJSetPreallocation(mat, bs, 0, d_nnz, 0, o_nnz)); 33239566063dSJacob Faibussowitsch PetscCall(PetscFree2(d_nnz, o_nnz)); 3324b51a4376SLisandro Dalcin } 3325b51a4376SLisandro Dalcin 3326b51a4376SLisandro Dalcin /* store matrix values */ 3327b51a4376SLisandro Dalcin for (i = 0; i < m; i++) { 3328b51a4376SLisandro Dalcin PetscInt row = rs + i, s = rowidxs[i], e = rowidxs[i + 1]; 33299566063dSJacob Faibussowitsch PetscCall((*mat->ops->setvalues)(mat, 1, &row, e - s, colidxs + s, matvals + s, INSERT_VALUES)); 3330b51a4376SLisandro Dalcin } 3331b51a4376SLisandro Dalcin 33329566063dSJacob Faibussowitsch PetscCall(PetscFree(rowidxs)); 33339566063dSJacob Faibussowitsch PetscCall(PetscFree2(colidxs, matvals)); 33349566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(mat, MAT_FINAL_ASSEMBLY)); 33359566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(mat, MAT_FINAL_ASSEMBLY)); 33363ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3337b51a4376SLisandro Dalcin } 3338b51a4376SLisandro Dalcin 3339d71ae5a4SJacob Faibussowitsch PetscErrorCode MatLoad_MPIBAIJ(Mat mat, PetscViewer viewer) 3340d71ae5a4SJacob Faibussowitsch { 33417f489da9SVaclav Hapla PetscBool isbinary; 33424683f7a4SShri Abhyankar 33434683f7a4SShri Abhyankar PetscFunctionBegin; 33449566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary)); 33455f80ce2aSJacob Faibussowitsch PetscCheck(isbinary, PetscObjectComm((PetscObject)viewer), PETSC_ERR_SUP, "Viewer type %s not yet supported for reading %s matrices", ((PetscObject)viewer)->type_name, ((PetscObject)mat)->type_name); 33469566063dSJacob Faibussowitsch PetscCall(MatLoad_MPIBAIJ_Binary(mat, viewer)); 33473ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 33484683f7a4SShri Abhyankar } 33494683f7a4SShri Abhyankar 3350133cdb44SSatish Balay /*@ 335111a5261eSBarry Smith MatMPIBAIJSetHashTableFactor - Sets the factor required to compute the size of the matrices hash table 3352133cdb44SSatish Balay 3353133cdb44SSatish Balay Input Parameters: 3354a2b725a8SWilliam Gropp + mat - the matrix 3355a2b725a8SWilliam Gropp - fact - factor 3356133cdb44SSatish Balay 335711a5261eSBarry Smith Options Database Key: 335811a5261eSBarry Smith . -mat_use_hash_table <fact> - provide the factor 3359fee21e36SBarry Smith 33608c890885SBarry Smith Level: advanced 33618c890885SBarry Smith 336267be906fSBarry Smith .seealso: `Mat`, `MATMPIBAIJ`, `MatSetOption()` 3363133cdb44SSatish Balay @*/ 3364d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIBAIJSetHashTableFactor(Mat mat, PetscReal fact) 3365d71ae5a4SJacob Faibussowitsch { 33665bf65638SKris Buschelman PetscFunctionBegin; 3367cac4c232SBarry Smith PetscTryMethod(mat, "MatSetHashTableFactor_C", (Mat, PetscReal), (mat, fact)); 33683ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 33695bf65638SKris Buschelman } 33705bf65638SKris Buschelman 3371d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetHashTableFactor_MPIBAIJ(Mat mat, PetscReal fact) 3372d71ae5a4SJacob Faibussowitsch { 337325fdafccSSatish Balay Mat_MPIBAIJ *baij; 3374133cdb44SSatish Balay 3375133cdb44SSatish Balay PetscFunctionBegin; 3376133cdb44SSatish Balay baij = (Mat_MPIBAIJ *)mat->data; 3377133cdb44SSatish Balay baij->ht_fact = fact; 33783ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3379133cdb44SSatish Balay } 3380f2a5309cSSatish Balay 3381d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIBAIJGetSeqBAIJ(Mat A, Mat *Ad, Mat *Ao, const PetscInt *colmap[]) 3382d71ae5a4SJacob Faibussowitsch { 3383f2a5309cSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 3384ab4d48faSStefano Zampini PetscBool flg; 33855fd66863SKarl Rupp 3386f2a5309cSSatish Balay PetscFunctionBegin; 33879566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)A, MATMPIBAIJ, &flg)); 33885f80ce2aSJacob Faibussowitsch PetscCheck(flg, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "This function requires a MATMPIBAIJ matrix as input"); 338921e72a00SBarry Smith if (Ad) *Ad = a->A; 339021e72a00SBarry Smith if (Ao) *Ao = a->B; 339121e72a00SBarry Smith if (colmap) *colmap = a->garray; 33923ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3393f2a5309cSSatish Balay } 339485535b8eSBarry Smith 339585535b8eSBarry Smith /* 339685535b8eSBarry Smith Special version for direct calls from Fortran (to eliminate two function call overheads 339785535b8eSBarry Smith */ 339885535b8eSBarry Smith #if defined(PETSC_HAVE_FORTRAN_CAPS) 339985535b8eSBarry Smith #define matmpibaijsetvaluesblocked_ MATMPIBAIJSETVALUESBLOCKED 340085535b8eSBarry Smith #elif !defined(PETSC_HAVE_FORTRAN_UNDERSCORE) 340185535b8eSBarry Smith #define matmpibaijsetvaluesblocked_ matmpibaijsetvaluesblocked 340285535b8eSBarry Smith #endif 340385535b8eSBarry Smith 340485535b8eSBarry Smith /*@C 340511a5261eSBarry Smith MatMPIBAIJSetValuesBlocked - Direct Fortran call to replace call to `MatSetValuesBlocked()` 340685535b8eSBarry Smith 3407c3339decSBarry Smith Collective 340885535b8eSBarry Smith 340985535b8eSBarry Smith Input Parameters: 3410fe59aa6dSJacob Faibussowitsch + matin - the matrix 341185535b8eSBarry Smith . min - number of input rows 341285535b8eSBarry Smith . im - input rows 341385535b8eSBarry Smith . nin - number of input columns 341485535b8eSBarry Smith . in - input columns 341585535b8eSBarry Smith . v - numerical values input 341611a5261eSBarry Smith - addvin - `INSERT_VALUES` or `ADD_VALUES` 341785535b8eSBarry Smith 341820f4b53cSBarry Smith Level: advanced 341920f4b53cSBarry Smith 3420fe59aa6dSJacob Faibussowitsch Developer Notes: 342111a5261eSBarry Smith This has a complete copy of `MatSetValuesBlocked_MPIBAIJ()` which is terrible code un-reuse. 342285535b8eSBarry Smith 342367be906fSBarry Smith .seealso: `Mat`, `MatSetValuesBlocked()` 342485535b8eSBarry Smith @*/ 3425d71ae5a4SJacob Faibussowitsch PetscErrorCode matmpibaijsetvaluesblocked_(Mat *matin, PetscInt *min, const PetscInt im[], PetscInt *nin, const PetscInt in[], const MatScalar v[], InsertMode *addvin) 3426d71ae5a4SJacob Faibussowitsch { 342785535b8eSBarry Smith /* convert input arguments to C version */ 342885535b8eSBarry Smith Mat mat = *matin; 342985535b8eSBarry Smith PetscInt m = *min, n = *nin; 343085535b8eSBarry Smith InsertMode addv = *addvin; 343185535b8eSBarry Smith 343285535b8eSBarry Smith Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 343385535b8eSBarry Smith const MatScalar *value; 343485535b8eSBarry Smith MatScalar *barray = baij->barray; 3435ace3abfcSBarry Smith PetscBool roworiented = baij->roworiented; 343685535b8eSBarry Smith PetscInt i, j, ii, jj, row, col, rstart = baij->rstartbs; 343785535b8eSBarry Smith PetscInt rend = baij->rendbs, cstart = baij->cstartbs, stepval; 3438d0f46423SBarry Smith PetscInt cend = baij->cendbs, bs = mat->rmap->bs, bs2 = baij->bs2; 343985535b8eSBarry Smith 344085535b8eSBarry Smith PetscFunctionBegin; 344185535b8eSBarry Smith /* tasks normally handled by MatSetValuesBlocked() */ 344226fbe8dcSKarl Rupp if (mat->insertmode == NOT_SET_VALUES) mat->insertmode = addv; 34435f80ce2aSJacob Faibussowitsch else PetscCheck(mat->insertmode == addv, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Cannot mix add values and insert values"); 34445f80ce2aSJacob Faibussowitsch PetscCheck(!mat->factortype, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Not for factored matrix"); 344585535b8eSBarry Smith if (mat->assembled) { 344685535b8eSBarry Smith mat->was_assembled = PETSC_TRUE; 344785535b8eSBarry Smith mat->assembled = PETSC_FALSE; 344885535b8eSBarry Smith } 34499566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(MAT_SetValues, mat, 0, 0, 0)); 345085535b8eSBarry Smith 345185535b8eSBarry Smith if (!barray) { 34529566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(bs2, &barray)); 345385535b8eSBarry Smith baij->barray = barray; 345485535b8eSBarry Smith } 345585535b8eSBarry Smith 345626fbe8dcSKarl Rupp if (roworiented) stepval = (n - 1) * bs; 345726fbe8dcSKarl Rupp else stepval = (m - 1) * bs; 345826fbe8dcSKarl Rupp 345985535b8eSBarry Smith for (i = 0; i < m; i++) { 346085535b8eSBarry Smith if (im[i] < 0) continue; 34616bdcaf15SBarry Smith PetscCheck(im[i] < baij->Mbs, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large, row %" PetscInt_FMT " max %" PetscInt_FMT, im[i], baij->Mbs - 1); 346285535b8eSBarry Smith if (im[i] >= rstart && im[i] < rend) { 346385535b8eSBarry Smith row = im[i] - rstart; 346485535b8eSBarry Smith for (j = 0; j < n; j++) { 346585535b8eSBarry Smith /* If NumCol = 1 then a copy is not required */ 346685535b8eSBarry Smith if ((roworiented) && (n == 1)) { 346785535b8eSBarry Smith barray = (MatScalar *)v + i * bs2; 346885535b8eSBarry Smith } else if ((!roworiented) && (m == 1)) { 346985535b8eSBarry Smith barray = (MatScalar *)v + j * bs2; 347085535b8eSBarry Smith } else { /* Here a copy is required */ 347185535b8eSBarry Smith if (roworiented) { 347285535b8eSBarry Smith value = v + i * (stepval + bs) * bs + j * bs; 347385535b8eSBarry Smith } else { 347485535b8eSBarry Smith value = v + j * (stepval + bs) * bs + i * bs; 347585535b8eSBarry Smith } 347685535b8eSBarry Smith for (ii = 0; ii < bs; ii++, value += stepval) { 3477ad540459SPierre Jolivet for (jj = 0; jj < bs; jj++) *barray++ = *value++; 347885535b8eSBarry Smith } 347985535b8eSBarry Smith barray -= bs2; 348085535b8eSBarry Smith } 348185535b8eSBarry Smith 348285535b8eSBarry Smith if (in[j] >= cstart && in[j] < cend) { 348385535b8eSBarry Smith col = in[j] - cstart; 34849566063dSJacob Faibussowitsch PetscCall(MatSetValuesBlocked_SeqBAIJ_Inlined(baij->A, row, col, barray, addv, im[i], in[j])); 3485f7d195e4SLawrence Mitchell } else if (in[j] < 0) { 3486f7d195e4SLawrence Mitchell continue; 3487f7d195e4SLawrence Mitchell } else { 3488f7d195e4SLawrence Mitchell PetscCheck(in[j] < baij->Nbs, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large, col %" PetscInt_FMT " max %" PetscInt_FMT, in[j], baij->Nbs - 1); 348985535b8eSBarry Smith if (mat->was_assembled) { 349048a46eb9SPierre Jolivet if (!baij->colmap) PetscCall(MatCreateColmap_MPIBAIJ_Private(mat)); 349185535b8eSBarry Smith 349285535b8eSBarry Smith #if defined(PETSC_USE_DEBUG) 349385535b8eSBarry Smith #if defined(PETSC_USE_CTABLE) 34949371c9d4SSatish Balay { 34959371c9d4SSatish Balay PetscInt data; 3496eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIGetWithDefault(baij->colmap, in[j] + 1, 0, &data)); 349708401ef6SPierre Jolivet PetscCheck((data - 1) % bs == 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Incorrect colmap"); 349885535b8eSBarry Smith } 349985535b8eSBarry Smith #else 350008401ef6SPierre Jolivet PetscCheck((baij->colmap[in[j]] - 1) % bs == 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Incorrect colmap"); 350185535b8eSBarry Smith #endif 350285535b8eSBarry Smith #endif 350385535b8eSBarry Smith #if defined(PETSC_USE_CTABLE) 3504eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIGetWithDefault(baij->colmap, in[j] + 1, 0, &col)); 350585535b8eSBarry Smith col = (col - 1) / bs; 350685535b8eSBarry Smith #else 350785535b8eSBarry Smith col = (baij->colmap[in[j]] - 1) / bs; 350885535b8eSBarry Smith #endif 350985535b8eSBarry Smith if (col < 0 && !((Mat_SeqBAIJ *)(baij->A->data))->nonew) { 35109566063dSJacob Faibussowitsch PetscCall(MatDisAssemble_MPIBAIJ(mat)); 351185535b8eSBarry Smith col = in[j]; 351285535b8eSBarry Smith } 351326fbe8dcSKarl Rupp } else col = in[j]; 35149566063dSJacob Faibussowitsch PetscCall(MatSetValuesBlocked_SeqBAIJ_Inlined(baij->B, row, col, barray, addv, im[i], in[j])); 351585535b8eSBarry Smith } 351685535b8eSBarry Smith } 351785535b8eSBarry Smith } else { 351885535b8eSBarry Smith if (!baij->donotstash) { 351985535b8eSBarry Smith if (roworiented) { 35209566063dSJacob Faibussowitsch PetscCall(MatStashValuesRowBlocked_Private(&mat->bstash, im[i], n, in, v, m, n, i)); 352185535b8eSBarry Smith } else { 35229566063dSJacob Faibussowitsch PetscCall(MatStashValuesColBlocked_Private(&mat->bstash, im[i], n, in, v, m, n, i)); 352385535b8eSBarry Smith } 352485535b8eSBarry Smith } 352585535b8eSBarry Smith } 352685535b8eSBarry Smith } 352785535b8eSBarry Smith 352885535b8eSBarry Smith /* task normally handled by MatSetValuesBlocked() */ 35299566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(MAT_SetValues, mat, 0, 0, 0)); 35303ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 353185535b8eSBarry Smith } 3532dfb205c3SBarry Smith 3533dfb205c3SBarry Smith /*@ 353411a5261eSBarry Smith MatCreateMPIBAIJWithArrays - creates a `MATMPIBAIJ` matrix using arrays that contain in standard block 3535dfb205c3SBarry Smith CSR format the local rows. 3536dfb205c3SBarry Smith 3537d083f849SBarry Smith Collective 3538dfb205c3SBarry Smith 3539dfb205c3SBarry Smith Input Parameters: 3540dfb205c3SBarry Smith + comm - MPI communicator 3541dfb205c3SBarry Smith . bs - the block size, only a block size of 1 is supported 354211a5261eSBarry Smith . m - number of local rows (Cannot be `PETSC_DECIDE`) 3543dfb205c3SBarry Smith . n - This value should be the same as the local size used in creating the 354411a5261eSBarry Smith x vector for the matrix-vector product y = Ax. (or `PETSC_DECIDE` to have 3545dfb205c3SBarry Smith calculated if N is given) For square matrices n is almost always m. 354611a5261eSBarry Smith . M - number of global rows (or `PETSC_DETERMINE` to have calculated if m is given) 354711a5261eSBarry Smith . N - number of global columns (or `PETSC_DETERMINE` to have calculated if n is given) 3548483a2f95SBarry Smith . i - row indices; that is i[0] = 0, i[row] = i[row-1] + number of block elements in that rowth block row of the matrix 3549dfb205c3SBarry Smith . j - column indices 3550dfb205c3SBarry Smith - a - matrix values 3551dfb205c3SBarry Smith 3552dfb205c3SBarry Smith Output Parameter: 3553dfb205c3SBarry Smith . mat - the matrix 3554dfb205c3SBarry Smith 3555dfb205c3SBarry Smith Level: intermediate 3556dfb205c3SBarry Smith 3557dfb205c3SBarry Smith Notes: 355867be906fSBarry Smith The `i`, `j`, and `a` arrays ARE copied by this routine into the internal format used by PETSc; 3559dfb205c3SBarry Smith thus you CANNOT change the matrix entries by changing the values of a[] after you have 356011a5261eSBarry Smith called this routine. Use `MatCreateMPIAIJWithSplitArrays()` to avoid needing to copy the arrays. 3561dfb205c3SBarry Smith 35623adadaf3SJed Brown The order of the entries in values is the same as the block compressed sparse row storage format; that is, it is 35633adadaf3SJed Brown the same as a three dimensional array in Fortran values(bs,bs,nnz) that contains the first column of the first 35643adadaf3SJed Brown block, followed by the second column of the first block etc etc. That is, the blocks are contiguous in memory 35653adadaf3SJed Brown with column-major ordering within blocks. 35663adadaf3SJed Brown 356767be906fSBarry Smith The `i` and `j` indices are 0 based, and i indices are indices corresponding to the local `j` array. 3568dfb205c3SBarry Smith 356967be906fSBarry Smith .seealso: `Mat`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`, 3570db781477SPatrick Sanan `MPIAIJ`, `MatCreateAIJ()`, `MatCreateMPIAIJWithSplitArrays()` 3571dfb205c3SBarry Smith @*/ 3572d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIBAIJWithArrays(MPI_Comm comm, PetscInt bs, PetscInt m, PetscInt n, PetscInt M, PetscInt N, const PetscInt i[], const PetscInt j[], const PetscScalar a[], Mat *mat) 3573d71ae5a4SJacob Faibussowitsch { 3574dfb205c3SBarry Smith PetscFunctionBegin; 35755f80ce2aSJacob Faibussowitsch PetscCheck(!i[0], PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "i (row indices) must start with 0"); 35765f80ce2aSJacob Faibussowitsch PetscCheck(m >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "local number of rows (m) cannot be PETSC_DECIDE, or negative"); 35779566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, mat)); 35789566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*mat, m, n, M, N)); 35799566063dSJacob Faibussowitsch PetscCall(MatSetType(*mat, MATMPIBAIJ)); 35809566063dSJacob Faibussowitsch PetscCall(MatSetBlockSize(*mat, bs)); 35819566063dSJacob Faibussowitsch PetscCall(MatSetUp(*mat)); 35829566063dSJacob Faibussowitsch PetscCall(MatSetOption(*mat, MAT_ROW_ORIENTED, PETSC_FALSE)); 35839566063dSJacob Faibussowitsch PetscCall(MatMPIBAIJSetPreallocationCSR(*mat, bs, i, j, a)); 35849566063dSJacob Faibussowitsch PetscCall(MatSetOption(*mat, MAT_ROW_ORIENTED, PETSC_TRUE)); 35853ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3586dfb205c3SBarry Smith } 3587e561ad89SHong Zhang 3588d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIMatConcatenateSeqMat_MPIBAIJ(MPI_Comm comm, Mat inmat, PetscInt n, MatReuse scall, Mat *outmat) 3589d71ae5a4SJacob Faibussowitsch { 3590bd153df0SHong Zhang PetscInt m, N, i, rstart, nnz, Ii, bs, cbs; 3591bd153df0SHong Zhang PetscInt *indx; 3592bd153df0SHong Zhang PetscScalar *values; 3593e561ad89SHong Zhang 3594e561ad89SHong Zhang PetscFunctionBegin; 35959566063dSJacob Faibussowitsch PetscCall(MatGetSize(inmat, &m, &N)); 3596bd153df0SHong Zhang if (scall == MAT_INITIAL_MATRIX) { /* symbolic phase */ 3597bd153df0SHong Zhang Mat_SeqBAIJ *a = (Mat_SeqBAIJ *)inmat->data; 35982c6ba4edSHong Zhang PetscInt *dnz, *onz, mbs, Nbs, nbs; 3599bd153df0SHong Zhang PetscInt *bindx, rmax = a->rmax, j; 360077f764caSHong Zhang PetscMPIInt rank, size; 3601e561ad89SHong Zhang 36029566063dSJacob Faibussowitsch PetscCall(MatGetBlockSizes(inmat, &bs, &cbs)); 36039371c9d4SSatish Balay mbs = m / bs; 36049371c9d4SSatish Balay Nbs = N / cbs; 360548a46eb9SPierre Jolivet if (n == PETSC_DECIDE) PetscCall(PetscSplitOwnershipBlock(comm, cbs, &n, &N)); 3606da91a574SPierre Jolivet nbs = n / cbs; 3607e561ad89SHong Zhang 36089566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(rmax, &bindx)); 3609d0609cedSBarry Smith MatPreallocateBegin(comm, mbs, nbs, dnz, onz); /* inline function, output __end and __rstart are used below */ 361077f764caSHong Zhang 36119566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 36129566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &size)); 361377f764caSHong Zhang if (rank == size - 1) { 361477f764caSHong Zhang /* Check sum(nbs) = Nbs */ 36155f80ce2aSJacob Faibussowitsch PetscCheck(__end == Nbs, PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "Sum of local block columns %" PetscInt_FMT " != global block columns %" PetscInt_FMT, __end, Nbs); 361677f764caSHong Zhang } 361777f764caSHong Zhang 3618d0609cedSBarry Smith rstart = __rstart; /* block rstart of *outmat; see inline function MatPreallocateBegin */ 3619bd153df0SHong Zhang for (i = 0; i < mbs; i++) { 36209566063dSJacob Faibussowitsch PetscCall(MatGetRow_SeqBAIJ(inmat, i * bs, &nnz, &indx, NULL)); /* non-blocked nnz and indx */ 3621647a6520SHong Zhang nnz = nnz / bs; 3622647a6520SHong Zhang for (j = 0; j < nnz; j++) bindx[j] = indx[j * bs] / bs; 36239566063dSJacob Faibussowitsch PetscCall(MatPreallocateSet(i + rstart, nnz, bindx, dnz, onz)); 36249566063dSJacob Faibussowitsch PetscCall(MatRestoreRow_SeqBAIJ(inmat, i * bs, &nnz, &indx, NULL)); 3625e561ad89SHong Zhang } 36269566063dSJacob Faibussowitsch PetscCall(PetscFree(bindx)); 3627e561ad89SHong Zhang 36289566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, outmat)); 36299566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*outmat, m, n, PETSC_DETERMINE, PETSC_DETERMINE)); 36309566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizes(*outmat, bs, cbs)); 36319566063dSJacob Faibussowitsch PetscCall(MatSetType(*outmat, MATBAIJ)); 36329566063dSJacob Faibussowitsch PetscCall(MatSeqBAIJSetPreallocation(*outmat, bs, 0, dnz)); 36339566063dSJacob Faibussowitsch PetscCall(MatMPIBAIJSetPreallocation(*outmat, bs, 0, dnz, 0, onz)); 3634d0609cedSBarry Smith MatPreallocateEnd(dnz, onz); 36359566063dSJacob Faibussowitsch PetscCall(MatSetOption(*outmat, MAT_NO_OFF_PROC_ENTRIES, PETSC_TRUE)); 3636e561ad89SHong Zhang } 3637e561ad89SHong Zhang 3638bd153df0SHong Zhang /* numeric phase */ 36399566063dSJacob Faibussowitsch PetscCall(MatGetBlockSizes(inmat, &bs, &cbs)); 36409566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(*outmat, &rstart, NULL)); 3641e561ad89SHong Zhang 3642e561ad89SHong Zhang for (i = 0; i < m; i++) { 36439566063dSJacob Faibussowitsch PetscCall(MatGetRow_SeqBAIJ(inmat, i, &nnz, &indx, &values)); 3644e561ad89SHong Zhang Ii = i + rstart; 36459566063dSJacob Faibussowitsch PetscCall(MatSetValues(*outmat, 1, &Ii, nnz, indx, values, INSERT_VALUES)); 36469566063dSJacob Faibussowitsch PetscCall(MatRestoreRow_SeqBAIJ(inmat, i, &nnz, &indx, &values)); 3647e561ad89SHong Zhang } 36489566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(*outmat, MAT_FINAL_ASSEMBLY)); 36499566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(*outmat, MAT_FINAL_ASSEMBLY)); 36503ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3651e561ad89SHong Zhang } 3652