179bdfe76SSatish Balay #ifndef lint 2*ab26458aSBarry Smith static char vcid[] = "$Id: mpibaij.c,v 1.52 1997/01/27 18:17:11 bsmith Exp balay $"; 379bdfe76SSatish Balay #endif 479bdfe76SSatish Balay 570f55243SBarry Smith #include "src/mat/impls/baij/mpi/mpibaij.h" 6c16cb8f2SBarry Smith #include "src/vec/vecimpl.h" 779bdfe76SSatish Balay 857b952d6SSatish Balay #include "draw.h" 957b952d6SSatish Balay #include "pinclude/pviewer.h" 1057b952d6SSatish Balay 1157b952d6SSatish Balay extern int MatSetUpMultiply_MPIBAIJ(Mat); 1257b952d6SSatish Balay extern int DisAssemble_MPIBAIJ(Mat); 13d212a18eSSatish Balay extern int MatIncreaseOverlap_MPIBAIJ(Mat,int,IS *,int); 14d212a18eSSatish Balay extern int MatGetSubMatrices_MPIBAIJ(Mat,int,IS *,IS *,MatGetSubMatrixCall,Mat **); 1593bc47c4SSatish Balay extern int MatLUFactorSymbolic_MPIBAIJ(Mat,IS,IS,double,Mat *); 1693bc47c4SSatish Balay extern int MatLUFactorNumeric_MPIBAIJ(Mat,Mat *); 1793bc47c4SSatish Balay extern int MatLUFactor_MPIBAIJ(Mat,IS,IS,double); 1893bc47c4SSatish Balay extern int MatSolve_MPIBAIJ(Mat,Vec,Vec); 1993bc47c4SSatish Balay extern int MatSolveAdd_MPIBAIJ(Mat,Vec,Vec,Vec); 2093bc47c4SSatish Balay extern int MatSolveTrans_MPIBAIJ(Mat,Vec,Vec); 2193bc47c4SSatish Balay extern int MatSolveTransAdd_MPIBAIJ(Mat,Vec,Vec,Vec); 2293bc47c4SSatish Balay extern int MatILUFactorSymbolic_MPIBAIJ(Mat,IS,IS,double,int,Mat *); 2357b952d6SSatish Balay 243b2fbd54SBarry Smith 25537820f0SBarry Smith /* 26537820f0SBarry Smith Local utility routine that creates a mapping from the global column 2757b952d6SSatish Balay number to the local number in the off-diagonal part of the local 2857b952d6SSatish Balay storage of the matrix. This is done in a non scable way since the 2957b952d6SSatish Balay length of colmap equals the global matrix length. 3057b952d6SSatish Balay */ 315615d1e5SSatish Balay #undef __FUNC__ 325615d1e5SSatish Balay #define __FUNC__ "CreateColmap_MPIBAIJ_Private" 3357b952d6SSatish Balay static int CreateColmap_MPIBAIJ_Private(Mat mat) 3457b952d6SSatish Balay { 3557b952d6SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *) mat->data; 3657b952d6SSatish Balay Mat_SeqBAIJ *B = (Mat_SeqBAIJ*) baij->B->data; 37928fc39bSSatish Balay int nbs = B->nbs,i,bs=B->bs;; 3857b952d6SSatish Balay 3957b952d6SSatish Balay baij->colmap = (int *) PetscMalloc(baij->Nbs*sizeof(int));CHKPTRQ(baij->colmap); 4057b952d6SSatish Balay PLogObjectMemory(mat,baij->Nbs*sizeof(int)); 4157b952d6SSatish Balay PetscMemzero(baij->colmap,baij->Nbs*sizeof(int)); 42928fc39bSSatish Balay for ( i=0; i<nbs; i++ ) baij->colmap[baij->garray[i]] = i*bs+1; 4357b952d6SSatish Balay return 0; 4457b952d6SSatish Balay } 4557b952d6SSatish Balay 465615d1e5SSatish Balay #undef __FUNC__ 475615d1e5SSatish Balay #define __FUNC__ "MatGetRowIJ_MPIBAIJ(" 483b2fbd54SBarry Smith static int MatGetRowIJ_MPIBAIJ(Mat mat,int shift,PetscTruth symmetric,int *n,int **ia,int **ja, 493b2fbd54SBarry Smith PetscTruth *done) 5057b952d6SSatish Balay { 513b2fbd54SBarry Smith Mat_MPIBAIJ *aij = (Mat_MPIBAIJ *) mat->data; 5257b952d6SSatish Balay int ierr; 533b2fbd54SBarry Smith if (aij->size == 1) { 543b2fbd54SBarry Smith ierr = MatGetRowIJ(aij->A,shift,symmetric,n,ia,ja,done); CHKERRQ(ierr); 55e3372554SBarry Smith } else SETERRQ(1,0,"not supported in parallel"); 563b2fbd54SBarry Smith return 0; 573b2fbd54SBarry Smith } 583b2fbd54SBarry Smith 595615d1e5SSatish Balay #undef __FUNC__ 605615d1e5SSatish Balay #define __FUNC__ "MatRestoreRowIJ_MPIBAIJ" 613b2fbd54SBarry Smith static int MatRestoreRowIJ_MPIBAIJ(Mat mat,int shift,PetscTruth symmetric,int *n,int **ia,int **ja, 623b2fbd54SBarry Smith PetscTruth *done) 633b2fbd54SBarry Smith { 643b2fbd54SBarry Smith Mat_MPIBAIJ *aij = (Mat_MPIBAIJ *) mat->data; 653b2fbd54SBarry Smith int ierr; 663b2fbd54SBarry Smith if (aij->size == 1) { 673b2fbd54SBarry Smith ierr = MatRestoreRowIJ(aij->A,shift,symmetric,n,ia,ja,done); CHKERRQ(ierr); 68e3372554SBarry Smith } else SETERRQ(1,0,"not supported in parallel"); 6957b952d6SSatish Balay return 0; 7057b952d6SSatish Balay } 7180c1aa95SSatish Balay #define CHUNKSIZE 10 7280c1aa95SSatish Balay 73f5e9677aSSatish Balay #define MatSetValues_SeqBAIJ_A_Private(row,col,value,addv) \ 7480c1aa95SSatish Balay { \ 7580c1aa95SSatish Balay \ 7680c1aa95SSatish Balay brow = row/bs; \ 7780c1aa95SSatish Balay rp = aj + ai[brow]; ap = aa + bs2*ai[brow]; \ 7880c1aa95SSatish Balay rmax = imax[brow]; nrow = ailen[brow]; \ 7980c1aa95SSatish Balay bcol = col/bs; \ 8080c1aa95SSatish Balay ridx = row % bs; cidx = col % bs; \ 81*ab26458aSBarry Smith low = 0; high = nrow; \ 82*ab26458aSBarry Smith while (high-low > 3) { \ 83*ab26458aSBarry Smith t = (low+high)/2; \ 84*ab26458aSBarry Smith if (rp[t] > bcol) high = t; \ 85*ab26458aSBarry Smith else low = t; \ 86*ab26458aSBarry Smith } \ 87*ab26458aSBarry Smith for ( _i=low; _i<high; _i++ ) { \ 8880c1aa95SSatish Balay if (rp[_i] > bcol) break; \ 8980c1aa95SSatish Balay if (rp[_i] == bcol) { \ 9080c1aa95SSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 91eada6651SSatish Balay if (addv == ADD_VALUES) *bap += value; \ 92eada6651SSatish Balay else *bap = value; \ 9380c1aa95SSatish Balay goto _noinsert; \ 9480c1aa95SSatish Balay } \ 9580c1aa95SSatish Balay } \ 960520107fSSatish Balay if (a->nonew) goto _noinsert; \ 9780c1aa95SSatish Balay if (nrow >= rmax) { \ 9880c1aa95SSatish Balay /* there is no extra room in row, therefore enlarge */ \ 9980c1aa95SSatish Balay int new_nz = ai[a->mbs] + CHUNKSIZE,len,*new_i,*new_j; \ 10080c1aa95SSatish Balay Scalar *new_a; \ 10180c1aa95SSatish Balay \ 10280c1aa95SSatish Balay /* malloc new storage space */ \ 10380c1aa95SSatish Balay len = new_nz*(sizeof(int)+bs2*sizeof(Scalar))+(a->mbs+1)*sizeof(int); \ 10480c1aa95SSatish Balay new_a = (Scalar *) PetscMalloc( len ); CHKPTRQ(new_a); \ 10580c1aa95SSatish Balay new_j = (int *) (new_a + bs2*new_nz); \ 10680c1aa95SSatish Balay new_i = new_j + new_nz; \ 10780c1aa95SSatish Balay \ 10880c1aa95SSatish Balay /* copy over old data into new slots */ \ 10980c1aa95SSatish Balay for ( ii=0; ii<brow+1; ii++ ) {new_i[ii] = ai[ii];} \ 11080c1aa95SSatish Balay for ( ii=brow+1; ii<a->mbs+1; ii++ ) {new_i[ii] = ai[ii]+CHUNKSIZE;} \ 11180c1aa95SSatish Balay PetscMemcpy(new_j,aj,(ai[brow]+nrow)*sizeof(int)); \ 11280c1aa95SSatish Balay len = (new_nz - CHUNKSIZE - ai[brow] - nrow); \ 11380c1aa95SSatish Balay PetscMemcpy(new_j+ai[brow]+nrow+CHUNKSIZE,aj+ai[brow]+nrow, \ 11480c1aa95SSatish Balay len*sizeof(int)); \ 11580c1aa95SSatish Balay PetscMemcpy(new_a,aa,(ai[brow]+nrow)*bs2*sizeof(Scalar)); \ 11680c1aa95SSatish Balay PetscMemzero(new_a+bs2*(ai[brow]+nrow),bs2*CHUNKSIZE*sizeof(Scalar)); \ 11780c1aa95SSatish Balay PetscMemcpy(new_a+bs2*(ai[brow]+nrow+CHUNKSIZE), \ 11880c1aa95SSatish Balay aa+bs2*(ai[brow]+nrow),bs2*len*sizeof(Scalar)); \ 11980c1aa95SSatish Balay /* free up old matrix storage */ \ 12080c1aa95SSatish Balay PetscFree(a->a); \ 12180c1aa95SSatish Balay if (!a->singlemalloc) {PetscFree(a->i);PetscFree(a->j);} \ 12280c1aa95SSatish Balay aa = a->a = new_a; ai = a->i = new_i; aj = a->j = new_j; \ 12380c1aa95SSatish Balay a->singlemalloc = 1; \ 12480c1aa95SSatish Balay \ 12580c1aa95SSatish Balay rp = aj + ai[brow]; ap = aa + bs2*ai[brow]; \ 12680c1aa95SSatish Balay rmax = imax[brow] = imax[brow] + CHUNKSIZE; \ 12780c1aa95SSatish Balay PLogObjectMemory(A,CHUNKSIZE*(sizeof(int) + bs2*sizeof(Scalar))); \ 12880c1aa95SSatish Balay a->maxnz += bs2*CHUNKSIZE; \ 12980c1aa95SSatish Balay a->reallocs++; \ 13080c1aa95SSatish Balay a->nz++; \ 13180c1aa95SSatish Balay } \ 13280c1aa95SSatish Balay N = nrow++ - 1; \ 13380c1aa95SSatish Balay /* shift up all the later entries in this row */ \ 13480c1aa95SSatish Balay for ( ii=N; ii>=_i; ii-- ) { \ 13580c1aa95SSatish Balay rp[ii+1] = rp[ii]; \ 13680c1aa95SSatish Balay PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(Scalar)); \ 13780c1aa95SSatish Balay } \ 13880c1aa95SSatish Balay if (N>=_i) PetscMemzero(ap+bs2*_i,bs2*sizeof(Scalar)); \ 13980c1aa95SSatish Balay rp[_i] = bcol; \ 14080c1aa95SSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 14180c1aa95SSatish Balay _noinsert:; \ 14280c1aa95SSatish Balay ailen[brow] = nrow; \ 14380c1aa95SSatish Balay } 14457b952d6SSatish Balay 145639f9d9dSBarry Smith extern int MatSetValues_SeqBAIJ(Mat,int,int*,int,int*,Scalar*,InsertMode); 1465615d1e5SSatish Balay #undef __FUNC__ 1475615d1e5SSatish Balay #define __FUNC__ "MatSetValues_MPIBAIJ" 14857b952d6SSatish Balay static int MatSetValues_MPIBAIJ(Mat mat,int m,int *im,int n,int *in,Scalar *v,InsertMode addv) 14957b952d6SSatish Balay { 15057b952d6SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *) mat->data; 15157b952d6SSatish Balay Scalar value; 1524fa0d573SSatish Balay int ierr,i,j,row,col; 1534fa0d573SSatish Balay int roworiented = baij->roworiented,rstart_orig=baij->rstart_bs ; 1544fa0d573SSatish Balay int rend_orig=baij->rend_bs,cstart_orig=baij->cstart_bs; 1554fa0d573SSatish Balay int cend_orig=baij->cend_bs,bs=baij->bs; 15657b952d6SSatish Balay 157eada6651SSatish Balay /* Some Variables required in the macro */ 15880c1aa95SSatish Balay Mat A = baij->A; 15980c1aa95SSatish Balay Mat_SeqBAIJ *a = (Mat_SeqBAIJ *) (A)->data; 16080c1aa95SSatish Balay int *rp,ii,nrow,_i,rmax,N; 16180c1aa95SSatish Balay int *imax=a->imax,*ai=a->i,*ailen=a->ilen; 16280c1aa95SSatish Balay int *aj=a->j,brow,bcol; 163*ab26458aSBarry Smith int low,high,t,ridx,cidx,bs2=a->bs2; 16480c1aa95SSatish Balay Scalar *ap,*aa=a->a,*bap; 16580c1aa95SSatish Balay 1662c3acbe9SBarry Smith #if defined(PETSC_BOPT_g) 16757b952d6SSatish Balay if (baij->insertmode != NOT_SET_VALUES && baij->insertmode != addv) { 168e3372554SBarry Smith SETERRQ(1,0,"Cannot mix inserts and adds"); 16957b952d6SSatish Balay } 1702c3acbe9SBarry Smith #endif 17157b952d6SSatish Balay baij->insertmode = addv; 17257b952d6SSatish Balay for ( i=0; i<m; i++ ) { 173639f9d9dSBarry Smith #if defined(PETSC_BOPT_g) 174e3372554SBarry Smith if (im[i] < 0) SETERRQ(1,0,"Negative row"); 175e3372554SBarry Smith if (im[i] >= baij->M) SETERRQ(1,0,"Row too large"); 176639f9d9dSBarry Smith #endif 17757b952d6SSatish Balay if (im[i] >= rstart_orig && im[i] < rend_orig) { 17857b952d6SSatish Balay row = im[i] - rstart_orig; 17957b952d6SSatish Balay for ( j=0; j<n; j++ ) { 18057b952d6SSatish Balay if (in[j] >= cstart_orig && in[j] < cend_orig){ 18157b952d6SSatish Balay col = in[j] - cstart_orig; 18257b952d6SSatish Balay if (roworiented) value = v[i*n+j]; else value = v[i+j*m]; 183f5e9677aSSatish Balay MatSetValues_SeqBAIJ_A_Private(row,col,value,addv); 18480c1aa95SSatish Balay /* ierr = MatSetValues_SeqBAIJ(baij->A,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 18557b952d6SSatish Balay } 186639f9d9dSBarry Smith #if defined(PETSC_BOPT_g) 187e3372554SBarry Smith else if (in[j] < 0) {SETERRQ(1,0,"Negative column");} 188e3372554SBarry Smith else if (in[j] >= baij->N) {SETERRQ(1,0,"Col too large");} 189639f9d9dSBarry Smith #endif 19057b952d6SSatish Balay else { 19157b952d6SSatish Balay if (mat->was_assembled) { 192905e6a2fSBarry Smith if (!baij->colmap) { 193905e6a2fSBarry Smith ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 194905e6a2fSBarry Smith } 195905e6a2fSBarry Smith col = baij->colmap[in[j]/bs] - 1 + in[j]%bs; 19657b952d6SSatish Balay if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) { 19757b952d6SSatish Balay ierr = DisAssemble_MPIBAIJ(mat); CHKERRQ(ierr); 19857b952d6SSatish Balay col = in[j]; 19957b952d6SSatish Balay } 20057b952d6SSatish Balay } 20157b952d6SSatish Balay else col = in[j]; 20257b952d6SSatish Balay if (roworiented) value = v[i*n+j]; else value = v[i+j*m]; 203639f9d9dSBarry Smith ierr = MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv);CHKERRQ(ierr); 20457b952d6SSatish Balay } 20557b952d6SSatish Balay } 20657b952d6SSatish Balay } 20757b952d6SSatish Balay else { 20890f02eecSBarry Smith if (roworiented && !baij->donotstash) { 20957b952d6SSatish Balay ierr = StashValues_Private(&baij->stash,im[i],n,in,v+i*n,addv);CHKERRQ(ierr); 21057b952d6SSatish Balay } 21157b952d6SSatish Balay else { 21290f02eecSBarry Smith if (!baij->donotstash) { 21357b952d6SSatish Balay row = im[i]; 21457b952d6SSatish Balay for ( j=0; j<n; j++ ) { 21557b952d6SSatish Balay ierr = StashValues_Private(&baij->stash,row,1,in+j,v+i+j*m,addv);CHKERRQ(ierr); 21657b952d6SSatish Balay } 21757b952d6SSatish Balay } 21857b952d6SSatish Balay } 21957b952d6SSatish Balay } 22090f02eecSBarry Smith } 22157b952d6SSatish Balay return 0; 22257b952d6SSatish Balay } 22357b952d6SSatish Balay 224*ab26458aSBarry Smith extern int MatSetValuesBlocked_SeqBAIJ(Mat,int,int*,int,int*,Scalar*,InsertMode); 225*ab26458aSBarry Smith #undef __FUNC__ 226*ab26458aSBarry Smith #define __FUNC__ "MatSetValuesBlocked_MPIBAIJ" 227*ab26458aSBarry Smith static int MatSetValuesBlocked_MPIBAIJ(Mat mat,int m,int *im,int n,int *in,Scalar *v,InsertMode addv) 228*ab26458aSBarry Smith { 229*ab26458aSBarry Smith Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *) mat->data; 230*ab26458aSBarry Smith Scalar *value,*tmp; 231*ab26458aSBarry Smith int ierr,i,j,ii,jj,row,col; 232*ab26458aSBarry Smith int roworiented = baij->roworiented,rstart=baij->rstart ; 233*ab26458aSBarry Smith int rend=baij->rend,cstart=baij->cstart,stepval; 234*ab26458aSBarry Smith int cend=baij->cend,bs=baij->bs,bs2=baij->bs2; 235*ab26458aSBarry Smith 236*ab26458aSBarry Smith #if defined(PETSC_BOPT_g) 237*ab26458aSBarry Smith if (baij->insertmode != NOT_SET_VALUES && baij->insertmode != addv) { 238*ab26458aSBarry Smith SETERRQ(1,0,"Cannot mix inserts and adds"); 239*ab26458aSBarry Smith } 240*ab26458aSBarry Smith #endif 241*ab26458aSBarry Smith /* Should be stashed somewhere to avoid multiple mallocs */ 242*ab26458aSBarry Smith tmp = (Scalar*) PetscMalloc(bs2*sizeof(Scalar)); CHKPTRQ(tmp); 243*ab26458aSBarry Smith if (roworiented) { 244*ab26458aSBarry Smith stepval = (n-1)*bs; 245*ab26458aSBarry Smith } else { 246*ab26458aSBarry Smith stepval = (m-1)*bs; 247*ab26458aSBarry Smith } 248*ab26458aSBarry Smith value = (Scalar *)PetscMalloc(bs2*sizeof(Scalar)); CHKPTRQ(value); 249*ab26458aSBarry Smith baij->insertmode = addv; 250*ab26458aSBarry Smith for ( i=0; i<m; i++ ) { 251*ab26458aSBarry Smith #if defined(PETSC_BOPT_g) 252*ab26458aSBarry Smith if (im[i] < 0) SETERRQ(1,0,"Negative row"); 253*ab26458aSBarry Smith if (im[i] >= baij->Mbs) SETERRQ(1,0,"Row too large"); 254*ab26458aSBarry Smith #endif 255*ab26458aSBarry Smith if (im[i] >= rstart && im[i] < rend) { 256*ab26458aSBarry Smith row = im[i] - rstart; 257*ab26458aSBarry Smith for ( j=0; j<n; j++ ) { 258*ab26458aSBarry Smith if (in[j] >= cstart && in[j] < cend){ 259*ab26458aSBarry Smith col = in[j] - cstart; 260*ab26458aSBarry Smith if (roworiented) { 261*ab26458aSBarry Smith value = v + i*(stepval+bs)*bs + j*bs; 262*ab26458aSBarry Smith for ( ii=0; ii<bs; ii++,value+=stepval ) 263*ab26458aSBarry Smith for (jj=ii; jj<bs2; jj+=bs ) 264*ab26458aSBarry Smith tmp[jj] = *value++; 265*ab26458aSBarry Smith } else { 266*ab26458aSBarry Smith value = v + j*(stepval+bs)*bs + i*bs; 267*ab26458aSBarry Smith for ( ii=0; ii<bs; ii++,value+=stepval ) 268*ab26458aSBarry Smith for (jj=0; jj<bs; jj++ ) 269*ab26458aSBarry Smith *tmp++ = *value++; 270*ab26458aSBarry Smith tmp -=bs2; 271*ab26458aSBarry Smith } 272*ab26458aSBarry Smith ierr = MatSetValuesBlocked_SeqBAIJ(baij->A,1,&row,1,&col,tmp,addv);CHKERRQ(ierr); 273*ab26458aSBarry Smith } 274*ab26458aSBarry Smith #if defined(PETSC_BOPT_g) 275*ab26458aSBarry Smith else if (in[j] < 0) {SETERRQ(1,0,"Negative column");} 276*ab26458aSBarry Smith else if (in[j] >= baij->Nbs) {SETERRQ(1,0,"Col too large");} 277*ab26458aSBarry Smith #endif 278*ab26458aSBarry Smith else { 279*ab26458aSBarry Smith if (mat->was_assembled) { 280*ab26458aSBarry Smith if (!baij->colmap) { 281*ab26458aSBarry Smith ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 282*ab26458aSBarry Smith } 283*ab26458aSBarry Smith col = baij->colmap[in[j]] - 1; 284*ab26458aSBarry Smith if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) { 285*ab26458aSBarry Smith ierr = DisAssemble_MPIBAIJ(mat); CHKERRQ(ierr); 286*ab26458aSBarry Smith col = in[j]; 287*ab26458aSBarry Smith } 288*ab26458aSBarry Smith } 289*ab26458aSBarry Smith else col = in[j]; 290*ab26458aSBarry Smith if (roworiented) { 291*ab26458aSBarry Smith value = v + i*(stepval+bs)*bs + j*bs; 292*ab26458aSBarry Smith for ( ii=0; ii<bs; ii++,value+=stepval ) 293*ab26458aSBarry Smith for (jj=ii; jj<bs2; jj+=bs ) 294*ab26458aSBarry Smith tmp[jj] = *value++; 295*ab26458aSBarry Smith } else { 296*ab26458aSBarry Smith value = v + j*(stepval+bs)*bs + i*bs; 297*ab26458aSBarry Smith for ( ii=0; ii<bs; ii++,value+=stepval ) 298*ab26458aSBarry Smith for (jj=0; jj<bs; jj++ ) 299*ab26458aSBarry Smith *tmp++ = *value++; 300*ab26458aSBarry Smith tmp -=bs2; 301*ab26458aSBarry Smith } 302*ab26458aSBarry Smith ierr = MatSetValuesBlocked_SeqBAIJ(baij->B,1,&row,1,&col,tmp,addv);CHKERRQ(ierr); 303*ab26458aSBarry Smith } 304*ab26458aSBarry Smith } 305*ab26458aSBarry Smith } 306*ab26458aSBarry Smith else { 307*ab26458aSBarry Smith if (!baij->donotstash) { 308*ab26458aSBarry Smith row = im[i]*bs; 309*ab26458aSBarry Smith if (roworiented ) { 310*ab26458aSBarry Smith for ( ii=0; ii<bs; i++,row++ ) { 311*ab26458aSBarry Smith for ( jj=0; jj<bs; jj++ ) { 312*ab26458aSBarry Smith ierr = StashValues_Private(&baij->stash,im[i],n,in,v+i*n,addv);CHKERRQ(ierr); 313*ab26458aSBarry Smith } 314*ab26458aSBarry Smith } 315*ab26458aSBarry Smith } 316*ab26458aSBarry Smith else { 317*ab26458aSBarry Smith row = im[i]; 318*ab26458aSBarry Smith for ( j=0; j<n; j++ ) { 319*ab26458aSBarry Smith ierr = StashValues_Private(&baij->stash,row,1,in+j,v+i+j*m,addv);CHKERRQ(ierr); 320*ab26458aSBarry Smith } 321*ab26458aSBarry Smith } 322*ab26458aSBarry Smith } 323*ab26458aSBarry Smith } 324*ab26458aSBarry Smith } 325*ab26458aSBarry Smith PetscFree(tmp); 326*ab26458aSBarry Smith return 0; 327*ab26458aSBarry Smith } 328*ab26458aSBarry Smith 3295615d1e5SSatish Balay #undef __FUNC__ 3305615d1e5SSatish Balay #define __FUNC__ "MatGetValues_MPIBAIJ" 331d6de1c52SSatish Balay static int MatGetValues_MPIBAIJ(Mat mat,int m,int *idxm,int n,int *idxn,Scalar *v) 332d6de1c52SSatish Balay { 333d6de1c52SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *) mat->data; 334d6de1c52SSatish Balay int bs=baij->bs,ierr,i,j, bsrstart = baij->rstart*bs, bsrend = baij->rend*bs; 335d6de1c52SSatish Balay int bscstart = baij->cstart*bs, bscend = baij->cend*bs,row,col; 336d6de1c52SSatish Balay 337d6de1c52SSatish Balay for ( i=0; i<m; i++ ) { 338e3372554SBarry Smith if (idxm[i] < 0) SETERRQ(1,0,"Negative row"); 339e3372554SBarry Smith if (idxm[i] >= baij->M) SETERRQ(1,0,"Row too large"); 340d6de1c52SSatish Balay if (idxm[i] >= bsrstart && idxm[i] < bsrend) { 341d6de1c52SSatish Balay row = idxm[i] - bsrstart; 342d6de1c52SSatish Balay for ( j=0; j<n; j++ ) { 343e3372554SBarry Smith if (idxn[j] < 0) SETERRQ(1,0,"Negative column"); 344e3372554SBarry Smith if (idxn[j] >= baij->N) SETERRQ(1,0,"Col too large"); 345d6de1c52SSatish Balay if (idxn[j] >= bscstart && idxn[j] < bscend){ 346d6de1c52SSatish Balay col = idxn[j] - bscstart; 347d6de1c52SSatish Balay ierr = MatGetValues(baij->A,1,&row,1,&col,v+i*n+j); CHKERRQ(ierr); 348d6de1c52SSatish Balay } 349d6de1c52SSatish Balay else { 350905e6a2fSBarry Smith if (!baij->colmap) { 351905e6a2fSBarry Smith ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 352905e6a2fSBarry Smith } 353e60e1c95SSatish Balay if((baij->colmap[idxn[j]/bs]-1 < 0) || 354dcb20de4SSatish Balay (baij->garray[(baij->colmap[idxn[j]/bs]-1)/bs] != idxn[j]/bs)) *(v+i*n+j) = 0.0; 355d9d09a02SSatish Balay else { 356dcb20de4SSatish Balay col = (baij->colmap[idxn[j]/bs]-1) + idxn[j]%bs; 357d6de1c52SSatish Balay ierr = MatGetValues(baij->B,1,&row,1,&col,v+i*n+j); CHKERRQ(ierr); 358d6de1c52SSatish Balay } 359d6de1c52SSatish Balay } 360d6de1c52SSatish Balay } 361d9d09a02SSatish Balay } 362d6de1c52SSatish Balay else { 363e3372554SBarry Smith SETERRQ(1,0,"Only local values currently supported"); 364d6de1c52SSatish Balay } 365d6de1c52SSatish Balay } 366d6de1c52SSatish Balay return 0; 367d6de1c52SSatish Balay } 368d6de1c52SSatish Balay 3695615d1e5SSatish Balay #undef __FUNC__ 3705615d1e5SSatish Balay #define __FUNC__ "MatNorm_MPIBAIJ" 371d6de1c52SSatish Balay static int MatNorm_MPIBAIJ(Mat mat,NormType type,double *norm) 372d6de1c52SSatish Balay { 373d6de1c52SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *) mat->data; 374d6de1c52SSatish Balay Mat_SeqBAIJ *amat = (Mat_SeqBAIJ*) baij->A->data, *bmat = (Mat_SeqBAIJ*) baij->B->data; 375acdf5bf4SSatish Balay int ierr, i,bs2=baij->bs2; 376d6de1c52SSatish Balay double sum = 0.0; 377d6de1c52SSatish Balay Scalar *v; 378d6de1c52SSatish Balay 379d6de1c52SSatish Balay if (baij->size == 1) { 380d6de1c52SSatish Balay ierr = MatNorm(baij->A,type,norm); CHKERRQ(ierr); 381d6de1c52SSatish Balay } else { 382d6de1c52SSatish Balay if (type == NORM_FROBENIUS) { 383d6de1c52SSatish Balay v = amat->a; 384d6de1c52SSatish Balay for (i=0; i<amat->nz*bs2; i++ ) { 385d6de1c52SSatish Balay #if defined(PETSC_COMPLEX) 386d6de1c52SSatish Balay sum += real(conj(*v)*(*v)); v++; 387d6de1c52SSatish Balay #else 388d6de1c52SSatish Balay sum += (*v)*(*v); v++; 389d6de1c52SSatish Balay #endif 390d6de1c52SSatish Balay } 391d6de1c52SSatish Balay v = bmat->a; 392d6de1c52SSatish Balay for (i=0; i<bmat->nz*bs2; i++ ) { 393d6de1c52SSatish Balay #if defined(PETSC_COMPLEX) 394d6de1c52SSatish Balay sum += real(conj(*v)*(*v)); v++; 395d6de1c52SSatish Balay #else 396d6de1c52SSatish Balay sum += (*v)*(*v); v++; 397d6de1c52SSatish Balay #endif 398d6de1c52SSatish Balay } 399d6de1c52SSatish Balay MPI_Allreduce(&sum,norm,1,MPI_DOUBLE,MPI_SUM,mat->comm); 400d6de1c52SSatish Balay *norm = sqrt(*norm); 401d6de1c52SSatish Balay } 402acdf5bf4SSatish Balay else 403e3372554SBarry Smith SETERRQ(PETSC_ERR_SUP,0,"No support for this norm yet"); 404d6de1c52SSatish Balay } 405d6de1c52SSatish Balay return 0; 406d6de1c52SSatish Balay } 40757b952d6SSatish Balay 4085615d1e5SSatish Balay #undef __FUNC__ 4095615d1e5SSatish Balay #define __FUNC__ "MatAssemblyBegin_MPIBAIJ" 41057b952d6SSatish Balay static int MatAssemblyBegin_MPIBAIJ(Mat mat,MatAssemblyType mode) 41157b952d6SSatish Balay { 41257b952d6SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *) mat->data; 41357b952d6SSatish Balay MPI_Comm comm = mat->comm; 41457b952d6SSatish Balay int size = baij->size, *owners = baij->rowners,bs=baij->bs; 41557b952d6SSatish Balay int rank = baij->rank,tag = mat->tag, *owner,*starts,count,ierr; 41657b952d6SSatish Balay MPI_Request *send_waits,*recv_waits; 41757b952d6SSatish Balay int *nprocs,i,j,idx,*procs,nsends,nreceives,nmax,*work; 41857b952d6SSatish Balay InsertMode addv; 41957b952d6SSatish Balay Scalar *rvalues,*svalues; 42057b952d6SSatish Balay 42157b952d6SSatish Balay /* make sure all processors are either in INSERTMODE or ADDMODE */ 42257b952d6SSatish Balay MPI_Allreduce(&baij->insertmode,&addv,1,MPI_INT,MPI_BOR,comm); 42357b952d6SSatish Balay if (addv == (ADD_VALUES|INSERT_VALUES)) { 424e3372554SBarry Smith SETERRQ(1,0,"Some processors inserted others added"); 42557b952d6SSatish Balay } 42657b952d6SSatish Balay baij->insertmode = addv; /* in case this processor had no cache */ 42757b952d6SSatish Balay 42857b952d6SSatish Balay /* first count number of contributors to each processor */ 42957b952d6SSatish Balay nprocs = (int *) PetscMalloc( 2*size*sizeof(int) ); CHKPTRQ(nprocs); 43057b952d6SSatish Balay PetscMemzero(nprocs,2*size*sizeof(int)); procs = nprocs + size; 43157b952d6SSatish Balay owner = (int *) PetscMalloc( (baij->stash.n+1)*sizeof(int) ); CHKPTRQ(owner); 43257b952d6SSatish Balay for ( i=0; i<baij->stash.n; i++ ) { 43357b952d6SSatish Balay idx = baij->stash.idx[i]; 43457b952d6SSatish Balay for ( j=0; j<size; j++ ) { 43557b952d6SSatish Balay if (idx >= owners[j]*bs && idx < owners[j+1]*bs) { 43657b952d6SSatish Balay nprocs[j]++; procs[j] = 1; owner[i] = j; break; 43757b952d6SSatish Balay } 43857b952d6SSatish Balay } 43957b952d6SSatish Balay } 44057b952d6SSatish Balay nsends = 0; for ( i=0; i<size; i++ ) { nsends += procs[i];} 44157b952d6SSatish Balay 44257b952d6SSatish Balay /* inform other processors of number of messages and max length*/ 44357b952d6SSatish Balay work = (int *) PetscMalloc( size*sizeof(int) ); CHKPTRQ(work); 44457b952d6SSatish Balay MPI_Allreduce(procs, work,size,MPI_INT,MPI_SUM,comm); 44557b952d6SSatish Balay nreceives = work[rank]; 44657b952d6SSatish Balay MPI_Allreduce( nprocs, work,size,MPI_INT,MPI_MAX,comm); 44757b952d6SSatish Balay nmax = work[rank]; 44857b952d6SSatish Balay PetscFree(work); 44957b952d6SSatish Balay 45057b952d6SSatish Balay /* post receives: 45157b952d6SSatish Balay 1) each message will consist of ordered pairs 45257b952d6SSatish Balay (global index,value) we store the global index as a double 45357b952d6SSatish Balay to simplify the message passing. 45457b952d6SSatish Balay 2) since we don't know how long each individual message is we 45557b952d6SSatish Balay allocate the largest needed buffer for each receive. Potentially 45657b952d6SSatish Balay this is a lot of wasted space. 45757b952d6SSatish Balay 45857b952d6SSatish Balay 45957b952d6SSatish Balay This could be done better. 46057b952d6SSatish Balay */ 46157b952d6SSatish Balay rvalues = (Scalar *) PetscMalloc(3*(nreceives+1)*(nmax+1)*sizeof(Scalar)); 46257b952d6SSatish Balay CHKPTRQ(rvalues); 46357b952d6SSatish Balay recv_waits = (MPI_Request *) PetscMalloc((nreceives+1)*sizeof(MPI_Request)); 46457b952d6SSatish Balay CHKPTRQ(recv_waits); 46557b952d6SSatish Balay for ( i=0; i<nreceives; i++ ) { 46657b952d6SSatish Balay MPI_Irecv(rvalues+3*nmax*i,3*nmax,MPIU_SCALAR,MPI_ANY_SOURCE,tag, 46757b952d6SSatish Balay comm,recv_waits+i); 46857b952d6SSatish Balay } 46957b952d6SSatish Balay 47057b952d6SSatish Balay /* do sends: 47157b952d6SSatish Balay 1) starts[i] gives the starting index in svalues for stuff going to 47257b952d6SSatish Balay the ith processor 47357b952d6SSatish Balay */ 47457b952d6SSatish Balay svalues = (Scalar *) PetscMalloc(3*(baij->stash.n+1)*sizeof(Scalar));CHKPTRQ(svalues); 47557b952d6SSatish Balay send_waits = (MPI_Request *) PetscMalloc( (nsends+1)*sizeof(MPI_Request)); 47657b952d6SSatish Balay CHKPTRQ(send_waits); 47757b952d6SSatish Balay starts = (int *) PetscMalloc( size*sizeof(int) ); CHKPTRQ(starts); 47857b952d6SSatish Balay starts[0] = 0; 47957b952d6SSatish Balay for ( i=1; i<size; i++ ) { starts[i] = starts[i-1] + nprocs[i-1];} 48057b952d6SSatish Balay for ( i=0; i<baij->stash.n; i++ ) { 48157b952d6SSatish Balay svalues[3*starts[owner[i]]] = (Scalar) baij->stash.idx[i]; 48257b952d6SSatish Balay svalues[3*starts[owner[i]]+1] = (Scalar) baij->stash.idy[i]; 48357b952d6SSatish Balay svalues[3*(starts[owner[i]]++)+2] = baij->stash.array[i]; 48457b952d6SSatish Balay } 48557b952d6SSatish Balay PetscFree(owner); 48657b952d6SSatish Balay starts[0] = 0; 48757b952d6SSatish Balay for ( i=1; i<size; i++ ) { starts[i] = starts[i-1] + nprocs[i-1];} 48857b952d6SSatish Balay count = 0; 48957b952d6SSatish Balay for ( i=0; i<size; i++ ) { 49057b952d6SSatish Balay if (procs[i]) { 49157b952d6SSatish Balay MPI_Isend(svalues+3*starts[i],3*nprocs[i],MPIU_SCALAR,i,tag, 49257b952d6SSatish Balay comm,send_waits+count++); 49357b952d6SSatish Balay } 49457b952d6SSatish Balay } 49557b952d6SSatish Balay PetscFree(starts); PetscFree(nprocs); 49657b952d6SSatish Balay 49757b952d6SSatish Balay /* Free cache space */ 498d2dc9b81SLois Curfman McInnes PLogInfo(mat,"MatAssemblyBegin_MPIBAIJ:Number of off-processor values %d\n",baij->stash.n); 49957b952d6SSatish Balay ierr = StashDestroy_Private(&baij->stash); CHKERRQ(ierr); 50057b952d6SSatish Balay 50157b952d6SSatish Balay baij->svalues = svalues; baij->rvalues = rvalues; 50257b952d6SSatish Balay baij->nsends = nsends; baij->nrecvs = nreceives; 50357b952d6SSatish Balay baij->send_waits = send_waits; baij->recv_waits = recv_waits; 50457b952d6SSatish Balay baij->rmax = nmax; 50557b952d6SSatish Balay 50657b952d6SSatish Balay return 0; 50757b952d6SSatish Balay } 50857b952d6SSatish Balay 50957b952d6SSatish Balay 5105615d1e5SSatish Balay #undef __FUNC__ 5115615d1e5SSatish Balay #define __FUNC__ "MatAssemblyEnd_MPIBAIJ" 51257b952d6SSatish Balay static int MatAssemblyEnd_MPIBAIJ(Mat mat,MatAssemblyType mode) 51357b952d6SSatish Balay { 51457b952d6SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *) mat->data; 51557b952d6SSatish Balay MPI_Status *send_status,recv_status; 51657b952d6SSatish Balay int imdex,nrecvs = baij->nrecvs, count = nrecvs, i, n, ierr; 51757b952d6SSatish Balay int bs=baij->bs,row,col,other_disassembled; 51857b952d6SSatish Balay Scalar *values,val; 51957b952d6SSatish Balay InsertMode addv = baij->insertmode; 52057b952d6SSatish Balay 52157b952d6SSatish Balay /* wait on receives */ 52257b952d6SSatish Balay while (count) { 52357b952d6SSatish Balay MPI_Waitany(nrecvs,baij->recv_waits,&imdex,&recv_status); 52457b952d6SSatish Balay /* unpack receives into our local space */ 52557b952d6SSatish Balay values = baij->rvalues + 3*imdex*baij->rmax; 52657b952d6SSatish Balay MPI_Get_count(&recv_status,MPIU_SCALAR,&n); 52757b952d6SSatish Balay n = n/3; 52857b952d6SSatish Balay for ( i=0; i<n; i++ ) { 52957b952d6SSatish Balay row = (int) PetscReal(values[3*i]) - baij->rstart*bs; 53057b952d6SSatish Balay col = (int) PetscReal(values[3*i+1]); 53157b952d6SSatish Balay val = values[3*i+2]; 53257b952d6SSatish Balay if (col >= baij->cstart*bs && col < baij->cend*bs) { 53357b952d6SSatish Balay col -= baij->cstart*bs; 53457b952d6SSatish Balay MatSetValues(baij->A,1,&row,1,&col,&val,addv); 53557b952d6SSatish Balay } 53657b952d6SSatish Balay else { 53757b952d6SSatish Balay if (mat->was_assembled) { 538905e6a2fSBarry Smith if (!baij->colmap) { 539905e6a2fSBarry Smith ierr = CreateColmap_MPIBAIJ_Private(mat); CHKERRQ(ierr); 540905e6a2fSBarry Smith } 541905e6a2fSBarry Smith col = (baij->colmap[col/bs]-1)*bs + col%bs; 54257b952d6SSatish Balay if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) { 54357b952d6SSatish Balay ierr = DisAssemble_MPIBAIJ(mat); CHKERRQ(ierr); 54457b952d6SSatish Balay col = (int) PetscReal(values[3*i+1]); 54557b952d6SSatish Balay } 54657b952d6SSatish Balay } 54757b952d6SSatish Balay MatSetValues(baij->B,1,&row,1,&col,&val,addv); 54857b952d6SSatish Balay } 54957b952d6SSatish Balay } 55057b952d6SSatish Balay count--; 55157b952d6SSatish Balay } 55257b952d6SSatish Balay PetscFree(baij->recv_waits); PetscFree(baij->rvalues); 55357b952d6SSatish Balay 55457b952d6SSatish Balay /* wait on sends */ 55557b952d6SSatish Balay if (baij->nsends) { 55657b952d6SSatish Balay send_status = (MPI_Status *) PetscMalloc(baij->nsends*sizeof(MPI_Status)); 55757b952d6SSatish Balay CHKPTRQ(send_status); 55857b952d6SSatish Balay MPI_Waitall(baij->nsends,baij->send_waits,send_status); 55957b952d6SSatish Balay PetscFree(send_status); 56057b952d6SSatish Balay } 56157b952d6SSatish Balay PetscFree(baij->send_waits); PetscFree(baij->svalues); 56257b952d6SSatish Balay 56357b952d6SSatish Balay baij->insertmode = NOT_SET_VALUES; 56457b952d6SSatish Balay ierr = MatAssemblyBegin(baij->A,mode); CHKERRQ(ierr); 56557b952d6SSatish Balay ierr = MatAssemblyEnd(baij->A,mode); CHKERRQ(ierr); 56657b952d6SSatish Balay 56757b952d6SSatish Balay /* determine if any processor has disassembled, if so we must 56857b952d6SSatish Balay also disassemble ourselfs, in order that we may reassemble. */ 56957b952d6SSatish Balay MPI_Allreduce(&mat->was_assembled,&other_disassembled,1,MPI_INT,MPI_PROD,mat->comm); 57057b952d6SSatish Balay if (mat->was_assembled && !other_disassembled) { 57157b952d6SSatish Balay ierr = DisAssemble_MPIBAIJ(mat); CHKERRQ(ierr); 57257b952d6SSatish Balay } 57357b952d6SSatish Balay 5746d4a8577SBarry Smith if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) { 57557b952d6SSatish Balay ierr = MatSetUpMultiply_MPIBAIJ(mat); CHKERRQ(ierr); 57657b952d6SSatish Balay } 57757b952d6SSatish Balay ierr = MatAssemblyBegin(baij->B,mode); CHKERRQ(ierr); 57857b952d6SSatish Balay ierr = MatAssemblyEnd(baij->B,mode); CHKERRQ(ierr); 57957b952d6SSatish Balay 58057b952d6SSatish Balay if (baij->rowvalues) {PetscFree(baij->rowvalues); baij->rowvalues = 0;} 58157b952d6SSatish Balay return 0; 58257b952d6SSatish Balay } 58357b952d6SSatish Balay 5845615d1e5SSatish Balay #undef __FUNC__ 5855615d1e5SSatish Balay #define __FUNC__ "MatView_MPIBAIJ_Binary" 58657b952d6SSatish Balay static int MatView_MPIBAIJ_Binary(Mat mat,Viewer viewer) 58757b952d6SSatish Balay { 58857b952d6SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *) mat->data; 58957b952d6SSatish Balay int ierr; 59057b952d6SSatish Balay 59157b952d6SSatish Balay if (baij->size == 1) { 59257b952d6SSatish Balay ierr = MatView(baij->A,viewer); CHKERRQ(ierr); 59357b952d6SSatish Balay } 594e3372554SBarry Smith else SETERRQ(1,0,"Only uniprocessor output supported"); 59557b952d6SSatish Balay return 0; 59657b952d6SSatish Balay } 59757b952d6SSatish Balay 5985615d1e5SSatish Balay #undef __FUNC__ 5995615d1e5SSatish Balay #define __FUNC__ "MatView_MPIBAIJ_ASCIIorDraworMatlab" 60057b952d6SSatish Balay static int MatView_MPIBAIJ_ASCIIorDraworMatlab(Mat mat,Viewer viewer) 60157b952d6SSatish Balay { 60257b952d6SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *) mat->data; 603cee3aa6bSSatish Balay int ierr, format,rank,bs = baij->bs; 60457b952d6SSatish Balay FILE *fd; 60557b952d6SSatish Balay ViewerType vtype; 60657b952d6SSatish Balay 60757b952d6SSatish Balay ierr = ViewerGetType(viewer,&vtype); CHKERRQ(ierr); 60857b952d6SSatish Balay if (vtype == ASCII_FILES_VIEWER || vtype == ASCII_FILE_VIEWER) { 60957b952d6SSatish Balay ierr = ViewerGetFormat(viewer,&format); 610639f9d9dSBarry Smith if (format == VIEWER_FORMAT_ASCII_INFO_LONG) { 6114e220ebcSLois Curfman McInnes MatInfo info; 61257b952d6SSatish Balay MPI_Comm_rank(mat->comm,&rank); 61357b952d6SSatish Balay ierr = ViewerASCIIGetPointer(viewer,&fd); CHKERRQ(ierr); 6144e220ebcSLois Curfman McInnes ierr = MatGetInfo(mat,MAT_LOCAL,&info); 61557b952d6SSatish Balay PetscSequentialPhaseBegin(mat->comm,1); 61657b952d6SSatish Balay fprintf(fd,"[%d] Local rows %d nz %d nz alloced %d bs %d mem %d\n", 6174e220ebcSLois Curfman McInnes rank,baij->m,(int)info.nz_used*bs,(int)info.nz_allocated*bs, 6184e220ebcSLois Curfman McInnes baij->bs,(int)info.memory); 6194e220ebcSLois Curfman McInnes ierr = MatGetInfo(baij->A,MAT_LOCAL,&info); 6204e220ebcSLois Curfman McInnes fprintf(fd,"[%d] on-diagonal part: nz %d \n",rank,(int)info.nz_used*bs); 6214e220ebcSLois Curfman McInnes ierr = MatGetInfo(baij->B,MAT_LOCAL,&info); 6224e220ebcSLois Curfman McInnes fprintf(fd,"[%d] off-diagonal part: nz %d \n",rank,(int)info.nz_used*bs); 62357b952d6SSatish Balay fflush(fd); 62457b952d6SSatish Balay PetscSequentialPhaseEnd(mat->comm,1); 62557b952d6SSatish Balay ierr = VecScatterView(baij->Mvctx,viewer); CHKERRQ(ierr); 62657b952d6SSatish Balay return 0; 62757b952d6SSatish Balay } 628639f9d9dSBarry Smith else if (format == VIEWER_FORMAT_ASCII_INFO) { 629bcc3fcf6SBarry Smith PetscPrintf(mat->comm," block size is %d\n",bs); 63057b952d6SSatish Balay return 0; 63157b952d6SSatish Balay } 63257b952d6SSatish Balay } 63357b952d6SSatish Balay 63457b952d6SSatish Balay if (vtype == DRAW_VIEWER) { 63557b952d6SSatish Balay Draw draw; 63657b952d6SSatish Balay PetscTruth isnull; 63757b952d6SSatish Balay ierr = ViewerDrawGetDraw(viewer,&draw); CHKERRQ(ierr); 63857b952d6SSatish Balay ierr = DrawIsNull(draw,&isnull); CHKERRQ(ierr); if (isnull) return 0; 63957b952d6SSatish Balay } 64057b952d6SSatish Balay 64157b952d6SSatish Balay if (vtype == ASCII_FILE_VIEWER) { 64257b952d6SSatish Balay ierr = ViewerASCIIGetPointer(viewer,&fd); CHKERRQ(ierr); 64357b952d6SSatish Balay PetscSequentialPhaseBegin(mat->comm,1); 64457b952d6SSatish Balay fprintf(fd,"[%d] rows %d starts %d ends %d cols %d starts %d ends %d\n", 64557b952d6SSatish Balay baij->rank,baij->m,baij->rstart*bs,baij->rend*bs,baij->n, 64657b952d6SSatish Balay baij->cstart*bs,baij->cend*bs); 64757b952d6SSatish Balay ierr = MatView(baij->A,viewer); CHKERRQ(ierr); 64857b952d6SSatish Balay ierr = MatView(baij->B,viewer); CHKERRQ(ierr); 64957b952d6SSatish Balay fflush(fd); 65057b952d6SSatish Balay PetscSequentialPhaseEnd(mat->comm,1); 65157b952d6SSatish Balay } 65257b952d6SSatish Balay else { 65357b952d6SSatish Balay int size = baij->size; 65457b952d6SSatish Balay rank = baij->rank; 65557b952d6SSatish Balay if (size == 1) { 65657b952d6SSatish Balay ierr = MatView(baij->A,viewer); CHKERRQ(ierr); 65757b952d6SSatish Balay } 65857b952d6SSatish Balay else { 65957b952d6SSatish Balay /* assemble the entire matrix onto first processor. */ 66057b952d6SSatish Balay Mat A; 66157b952d6SSatish Balay Mat_SeqBAIJ *Aloc; 66257b952d6SSatish Balay int M = baij->M, N = baij->N,*ai,*aj,row,col,i,j,k,*rvals; 66357b952d6SSatish Balay int mbs=baij->mbs; 66457b952d6SSatish Balay Scalar *a; 66557b952d6SSatish Balay 66657b952d6SSatish Balay if (!rank) { 667cee3aa6bSSatish Balay ierr = MatCreateMPIBAIJ(mat->comm,baij->bs,M,N,M,N,0,PETSC_NULL,0,PETSC_NULL,&A); 66857b952d6SSatish Balay CHKERRQ(ierr); 66957b952d6SSatish Balay } 67057b952d6SSatish Balay else { 671cee3aa6bSSatish Balay ierr = MatCreateMPIBAIJ(mat->comm,baij->bs,0,0,M,N,0,PETSC_NULL,0,PETSC_NULL,&A); 67257b952d6SSatish Balay CHKERRQ(ierr); 67357b952d6SSatish Balay } 67457b952d6SSatish Balay PLogObjectParent(mat,A); 67557b952d6SSatish Balay 67657b952d6SSatish Balay /* copy over the A part */ 67757b952d6SSatish Balay Aloc = (Mat_SeqBAIJ*) baij->A->data; 67857b952d6SSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 67957b952d6SSatish Balay row = baij->rstart; 68057b952d6SSatish Balay rvals = (int *) PetscMalloc(bs*sizeof(int)); CHKPTRQ(rvals); 68157b952d6SSatish Balay 68257b952d6SSatish Balay for ( i=0; i<mbs; i++ ) { 68357b952d6SSatish Balay rvals[0] = bs*(baij->rstart + i); 68457b952d6SSatish Balay for ( j=1; j<bs; j++ ) { rvals[j] = rvals[j-1] + 1; } 68557b952d6SSatish Balay for ( j=ai[i]; j<ai[i+1]; j++ ) { 68657b952d6SSatish Balay col = (baij->cstart+aj[j])*bs; 68757b952d6SSatish Balay for (k=0; k<bs; k++ ) { 688cee3aa6bSSatish Balay ierr = MatSetValues(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 689cee3aa6bSSatish Balay col++; a += bs; 69057b952d6SSatish Balay } 69157b952d6SSatish Balay } 69257b952d6SSatish Balay } 69357b952d6SSatish Balay /* copy over the B part */ 69457b952d6SSatish Balay Aloc = (Mat_SeqBAIJ*) baij->B->data; 69557b952d6SSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 69657b952d6SSatish Balay row = baij->rstart*bs; 69757b952d6SSatish Balay for ( i=0; i<mbs; i++ ) { 69857b952d6SSatish Balay rvals[0] = bs*(baij->rstart + i); 69957b952d6SSatish Balay for ( j=1; j<bs; j++ ) { rvals[j] = rvals[j-1] + 1; } 70057b952d6SSatish Balay for ( j=ai[i]; j<ai[i+1]; j++ ) { 70157b952d6SSatish Balay col = baij->garray[aj[j]]*bs; 70257b952d6SSatish Balay for (k=0; k<bs; k++ ) { 703cee3aa6bSSatish Balay ierr = MatSetValues(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 704cee3aa6bSSatish Balay col++; a += bs; 70557b952d6SSatish Balay } 70657b952d6SSatish Balay } 70757b952d6SSatish Balay } 70857b952d6SSatish Balay PetscFree(rvals); 7096d4a8577SBarry Smith ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY); CHKERRQ(ierr); 7106d4a8577SBarry Smith ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY); CHKERRQ(ierr); 71157b952d6SSatish Balay if (!rank) { 71257b952d6SSatish Balay ierr = MatView(((Mat_MPIBAIJ*)(A->data))->A,viewer); CHKERRQ(ierr); 71357b952d6SSatish Balay } 71457b952d6SSatish Balay ierr = MatDestroy(A); CHKERRQ(ierr); 71557b952d6SSatish Balay } 71657b952d6SSatish Balay } 71757b952d6SSatish Balay return 0; 71857b952d6SSatish Balay } 71957b952d6SSatish Balay 72057b952d6SSatish Balay 72157b952d6SSatish Balay 7225615d1e5SSatish Balay #undef __FUNC__ 7235615d1e5SSatish Balay #define __FUNC__ "MatView_MPIBAIJ" 72457b952d6SSatish Balay static int MatView_MPIBAIJ(PetscObject obj,Viewer viewer) 72557b952d6SSatish Balay { 72657b952d6SSatish Balay Mat mat = (Mat) obj; 72757b952d6SSatish Balay int ierr; 72857b952d6SSatish Balay ViewerType vtype; 72957b952d6SSatish Balay 73057b952d6SSatish Balay ierr = ViewerGetType(viewer,&vtype); CHKERRQ(ierr); 73157b952d6SSatish Balay if (vtype == ASCII_FILE_VIEWER || vtype == ASCII_FILES_VIEWER || 73257b952d6SSatish Balay vtype == DRAW_VIEWER || vtype == MATLAB_VIEWER) { 73357b952d6SSatish Balay ierr = MatView_MPIBAIJ_ASCIIorDraworMatlab(mat,viewer); CHKERRQ(ierr); 73457b952d6SSatish Balay } 73557b952d6SSatish Balay else if (vtype == BINARY_FILE_VIEWER) { 73657b952d6SSatish Balay return MatView_MPIBAIJ_Binary(mat,viewer); 73757b952d6SSatish Balay } 73857b952d6SSatish Balay return 0; 73957b952d6SSatish Balay } 74057b952d6SSatish Balay 7415615d1e5SSatish Balay #undef __FUNC__ 7425615d1e5SSatish Balay #define __FUNC__ "MatDestroy_MPIBAIJ" 74379bdfe76SSatish Balay static int MatDestroy_MPIBAIJ(PetscObject obj) 74479bdfe76SSatish Balay { 74579bdfe76SSatish Balay Mat mat = (Mat) obj; 74679bdfe76SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *) mat->data; 74779bdfe76SSatish Balay int ierr; 74879bdfe76SSatish Balay 74979bdfe76SSatish Balay #if defined(PETSC_LOG) 75079bdfe76SSatish Balay PLogObjectState(obj,"Rows=%d, Cols=%d",baij->M,baij->N); 75179bdfe76SSatish Balay #endif 75279bdfe76SSatish Balay 75379bdfe76SSatish Balay PetscFree(baij->rowners); 75479bdfe76SSatish Balay ierr = MatDestroy(baij->A); CHKERRQ(ierr); 75579bdfe76SSatish Balay ierr = MatDestroy(baij->B); CHKERRQ(ierr); 75679bdfe76SSatish Balay if (baij->colmap) PetscFree(baij->colmap); 75779bdfe76SSatish Balay if (baij->garray) PetscFree(baij->garray); 75879bdfe76SSatish Balay if (baij->lvec) VecDestroy(baij->lvec); 75979bdfe76SSatish Balay if (baij->Mvctx) VecScatterDestroy(baij->Mvctx); 76079bdfe76SSatish Balay if (baij->rowvalues) PetscFree(baij->rowvalues); 76179bdfe76SSatish Balay PetscFree(baij); 76290f02eecSBarry Smith if (mat->mapping) { 76390f02eecSBarry Smith ierr = ISLocalToGlobalMappingDestroy(mat->mapping); CHKERRQ(ierr); 76490f02eecSBarry Smith } 76579bdfe76SSatish Balay PLogObjectDestroy(mat); 76679bdfe76SSatish Balay PetscHeaderDestroy(mat); 76779bdfe76SSatish Balay return 0; 76879bdfe76SSatish Balay } 76979bdfe76SSatish Balay 7705615d1e5SSatish Balay #undef __FUNC__ 7715615d1e5SSatish Balay #define __FUNC__ "MatMult_MPIBAIJ" 772cee3aa6bSSatish Balay static int MatMult_MPIBAIJ(Mat A,Vec xx,Vec yy) 773cee3aa6bSSatish Balay { 774cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ *) A->data; 77547b4a8eaSLois Curfman McInnes int ierr, nt; 776cee3aa6bSSatish Balay 777c16cb8f2SBarry Smith VecGetLocalSize_Fast(xx,nt); 77847b4a8eaSLois Curfman McInnes if (nt != a->n) { 779*ab26458aSBarry Smith SETERRQ(1,0,"Incompatible partition of A and xx"); 78047b4a8eaSLois Curfman McInnes } 781c16cb8f2SBarry Smith VecGetLocalSize_Fast(yy,nt); 78247b4a8eaSLois Curfman McInnes if (nt != a->m) { 783e3372554SBarry Smith SETERRQ(1,0,"Incompatible parition of A and yy"); 78447b4a8eaSLois Curfman McInnes } 78543a90d84SBarry Smith ierr = VecScatterBegin(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr); 786cee3aa6bSSatish Balay ierr = (*a->A->ops.mult)(a->A,xx,yy); CHKERRQ(ierr); 78743a90d84SBarry Smith ierr = VecScatterEnd(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr); 788cee3aa6bSSatish Balay ierr = (*a->B->ops.multadd)(a->B,a->lvec,yy,yy); CHKERRQ(ierr); 78943a90d84SBarry Smith ierr = VecScatterPostRecvs(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr); 790cee3aa6bSSatish Balay return 0; 791cee3aa6bSSatish Balay } 792cee3aa6bSSatish Balay 7935615d1e5SSatish Balay #undef __FUNC__ 7945615d1e5SSatish Balay #define __FUNC__ "MatMultAdd_MPIBAIJ" 795cee3aa6bSSatish Balay static int MatMultAdd_MPIBAIJ(Mat A,Vec xx,Vec yy,Vec zz) 796cee3aa6bSSatish Balay { 797cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ *) A->data; 798cee3aa6bSSatish Balay int ierr; 79943a90d84SBarry Smith ierr = VecScatterBegin(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr); 800cee3aa6bSSatish Balay ierr = (*a->A->ops.multadd)(a->A,xx,yy,zz); CHKERRQ(ierr); 80143a90d84SBarry Smith ierr = VecScatterEnd(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr); 802cee3aa6bSSatish Balay ierr = (*a->B->ops.multadd)(a->B,a->lvec,zz,zz); CHKERRQ(ierr); 803cee3aa6bSSatish Balay return 0; 804cee3aa6bSSatish Balay } 805cee3aa6bSSatish Balay 8065615d1e5SSatish Balay #undef __FUNC__ 8075615d1e5SSatish Balay #define __FUNC__ "MatMultTrans_MPIBAIJ" 808cee3aa6bSSatish Balay static int MatMultTrans_MPIBAIJ(Mat A,Vec xx,Vec yy) 809cee3aa6bSSatish Balay { 810cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ *) A->data; 811cee3aa6bSSatish Balay int ierr; 812cee3aa6bSSatish Balay 813cee3aa6bSSatish Balay /* do nondiagonal part */ 814cee3aa6bSSatish Balay ierr = (*a->B->ops.multtrans)(a->B,xx,a->lvec); CHKERRQ(ierr); 815cee3aa6bSSatish Balay /* send it on its way */ 816537820f0SBarry Smith ierr = VecScatterBegin(a->lvec,yy,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr); 817cee3aa6bSSatish Balay /* do local part */ 818cee3aa6bSSatish Balay ierr = (*a->A->ops.multtrans)(a->A,xx,yy); CHKERRQ(ierr); 819cee3aa6bSSatish Balay /* receive remote parts: note this assumes the values are not actually */ 820cee3aa6bSSatish Balay /* inserted in yy until the next line, which is true for my implementation*/ 821cee3aa6bSSatish Balay /* but is not perhaps always true. */ 822639f9d9dSBarry Smith ierr = VecScatterEnd(a->lvec,yy,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr); 823cee3aa6bSSatish Balay return 0; 824cee3aa6bSSatish Balay } 825cee3aa6bSSatish Balay 8265615d1e5SSatish Balay #undef __FUNC__ 8275615d1e5SSatish Balay #define __FUNC__ "MatMultTransAdd_MPIBAIJ" 828cee3aa6bSSatish Balay static int MatMultTransAdd_MPIBAIJ(Mat A,Vec xx,Vec yy,Vec zz) 829cee3aa6bSSatish Balay { 830cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ *) A->data; 831cee3aa6bSSatish Balay int ierr; 832cee3aa6bSSatish Balay 833cee3aa6bSSatish Balay /* do nondiagonal part */ 834cee3aa6bSSatish Balay ierr = (*a->B->ops.multtrans)(a->B,xx,a->lvec); CHKERRQ(ierr); 835cee3aa6bSSatish Balay /* send it on its way */ 836537820f0SBarry Smith ierr = VecScatterBegin(a->lvec,zz,ADD_VALUES,SCATTER_REVERSE,a->Mvctx); CHKERRQ(ierr); 837cee3aa6bSSatish Balay /* do local part */ 838cee3aa6bSSatish Balay ierr = (*a->A->ops.multtransadd)(a->A,xx,yy,zz); CHKERRQ(ierr); 839cee3aa6bSSatish Balay /* receive remote parts: note this assumes the values are not actually */ 840cee3aa6bSSatish Balay /* inserted in yy until the next line, which is true for my implementation*/ 841cee3aa6bSSatish Balay /* but is not perhaps always true. */ 842537820f0SBarry Smith ierr = VecScatterEnd(a->lvec,zz,ADD_VALUES,SCATTER_REVERSE,a->Mvctx); CHKERRQ(ierr); 843cee3aa6bSSatish Balay return 0; 844cee3aa6bSSatish Balay } 845cee3aa6bSSatish Balay 846cee3aa6bSSatish Balay /* 847cee3aa6bSSatish Balay This only works correctly for square matrices where the subblock A->A is the 848cee3aa6bSSatish Balay diagonal block 849cee3aa6bSSatish Balay */ 8505615d1e5SSatish Balay #undef __FUNC__ 8515615d1e5SSatish Balay #define __FUNC__ "MatGetDiagonal_MPIBAIJ" 852cee3aa6bSSatish Balay static int MatGetDiagonal_MPIBAIJ(Mat A,Vec v) 853cee3aa6bSSatish Balay { 854cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ *) A->data; 855cee3aa6bSSatish Balay if (a->M != a->N) 856e3372554SBarry Smith SETERRQ(1,0,"Supports only square matrix where A->A is diag block"); 857cee3aa6bSSatish Balay return MatGetDiagonal(a->A,v); 858cee3aa6bSSatish Balay } 859cee3aa6bSSatish Balay 8605615d1e5SSatish Balay #undef __FUNC__ 8615615d1e5SSatish Balay #define __FUNC__ "MatScale_MPIBAIJ" 862cee3aa6bSSatish Balay static int MatScale_MPIBAIJ(Scalar *aa,Mat A) 863cee3aa6bSSatish Balay { 864cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ *) A->data; 865cee3aa6bSSatish Balay int ierr; 866cee3aa6bSSatish Balay ierr = MatScale(aa,a->A); CHKERRQ(ierr); 867cee3aa6bSSatish Balay ierr = MatScale(aa,a->B); CHKERRQ(ierr); 868cee3aa6bSSatish Balay return 0; 869cee3aa6bSSatish Balay } 870026e39d0SSatish Balay 8715615d1e5SSatish Balay #undef __FUNC__ 8725615d1e5SSatish Balay #define __FUNC__ "MatGetSize_MPIBAIJ" 87357b952d6SSatish Balay static int MatGetSize_MPIBAIJ(Mat matin,int *m,int *n) 87457b952d6SSatish Balay { 87557b952d6SSatish Balay Mat_MPIBAIJ *mat = (Mat_MPIBAIJ *) matin->data; 87657b952d6SSatish Balay *m = mat->M; *n = mat->N; 87757b952d6SSatish Balay return 0; 87857b952d6SSatish Balay } 87957b952d6SSatish Balay 8805615d1e5SSatish Balay #undef __FUNC__ 8815615d1e5SSatish Balay #define __FUNC__ "MatGetLocalSize_MPIBAIJ" 88257b952d6SSatish Balay static int MatGetLocalSize_MPIBAIJ(Mat matin,int *m,int *n) 88357b952d6SSatish Balay { 88457b952d6SSatish Balay Mat_MPIBAIJ *mat = (Mat_MPIBAIJ *) matin->data; 88557b952d6SSatish Balay *m = mat->m; *n = mat->N; 88657b952d6SSatish Balay return 0; 88757b952d6SSatish Balay } 88857b952d6SSatish Balay 8895615d1e5SSatish Balay #undef __FUNC__ 8905615d1e5SSatish Balay #define __FUNC__ "MatGetOwnershipRange_MPIBAIJ" 89157b952d6SSatish Balay static int MatGetOwnershipRange_MPIBAIJ(Mat matin,int *m,int *n) 89257b952d6SSatish Balay { 89357b952d6SSatish Balay Mat_MPIBAIJ *mat = (Mat_MPIBAIJ *) matin->data; 89457b952d6SSatish Balay *m = mat->rstart*mat->bs; *n = mat->rend*mat->bs; 89557b952d6SSatish Balay return 0; 89657b952d6SSatish Balay } 89757b952d6SSatish Balay 898acdf5bf4SSatish Balay extern int MatGetRow_SeqBAIJ(Mat,int,int*,int**,Scalar**); 899acdf5bf4SSatish Balay extern int MatRestoreRow_SeqBAIJ(Mat,int,int*,int**,Scalar**); 900acdf5bf4SSatish Balay 9015615d1e5SSatish Balay #undef __FUNC__ 9025615d1e5SSatish Balay #define __FUNC__ "MatGetRow_MPIBAIJ" 903acdf5bf4SSatish Balay int MatGetRow_MPIBAIJ(Mat matin,int row,int *nz,int **idx,Scalar **v) 904acdf5bf4SSatish Balay { 905acdf5bf4SSatish Balay Mat_MPIBAIJ *mat = (Mat_MPIBAIJ *) matin->data; 906acdf5bf4SSatish Balay Scalar *vworkA, *vworkB, **pvA, **pvB,*v_p; 907acdf5bf4SSatish Balay int bs = mat->bs, bs2 = mat->bs2, i, ierr, *cworkA, *cworkB, **pcA, **pcB; 908d9d09a02SSatish Balay int nztot, nzA, nzB, lrow, brstart = mat->rstart*bs, brend = mat->rend*bs; 909d9d09a02SSatish Balay int *cmap, *idx_p,cstart = mat->cstart; 910acdf5bf4SSatish Balay 911e3372554SBarry Smith if (mat->getrowactive == PETSC_TRUE) SETERRQ(1,0,"Already active"); 912acdf5bf4SSatish Balay mat->getrowactive = PETSC_TRUE; 913acdf5bf4SSatish Balay 914acdf5bf4SSatish Balay if (!mat->rowvalues && (idx || v)) { 915acdf5bf4SSatish Balay /* 916acdf5bf4SSatish Balay allocate enough space to hold information from the longest row. 917acdf5bf4SSatish Balay */ 918acdf5bf4SSatish Balay Mat_SeqBAIJ *Aa = (Mat_SeqBAIJ *) mat->A->data,*Ba = (Mat_SeqBAIJ *) mat->B->data; 919bd16c2feSSatish Balay int max = 1,mbs = mat->mbs,tmp; 920bd16c2feSSatish Balay for ( i=0; i<mbs; i++ ) { 921acdf5bf4SSatish Balay tmp = Aa->i[i+1] - Aa->i[i] + Ba->i[i+1] - Ba->i[i]; 922acdf5bf4SSatish Balay if (max < tmp) { max = tmp; } 923acdf5bf4SSatish Balay } 924acdf5bf4SSatish Balay mat->rowvalues = (Scalar *) PetscMalloc( max*bs2*(sizeof(int)+sizeof(Scalar))); 925acdf5bf4SSatish Balay CHKPTRQ(mat->rowvalues); 926acdf5bf4SSatish Balay mat->rowindices = (int *) (mat->rowvalues + max*bs2); 927acdf5bf4SSatish Balay } 928acdf5bf4SSatish Balay 929acdf5bf4SSatish Balay 930e3372554SBarry Smith if (row < brstart || row >= brend) SETERRQ(1,0,"Only local rows") 931d9d09a02SSatish Balay lrow = row - brstart; 932acdf5bf4SSatish Balay 933acdf5bf4SSatish Balay pvA = &vworkA; pcA = &cworkA; pvB = &vworkB; pcB = &cworkB; 934acdf5bf4SSatish Balay if (!v) {pvA = 0; pvB = 0;} 935acdf5bf4SSatish Balay if (!idx) {pcA = 0; if (!v) pcB = 0;} 936acdf5bf4SSatish Balay ierr = (*mat->A->ops.getrow)(mat->A,lrow,&nzA,pcA,pvA); CHKERRQ(ierr); 937acdf5bf4SSatish Balay ierr = (*mat->B->ops.getrow)(mat->B,lrow,&nzB,pcB,pvB); CHKERRQ(ierr); 938acdf5bf4SSatish Balay nztot = nzA + nzB; 939acdf5bf4SSatish Balay 940acdf5bf4SSatish Balay cmap = mat->garray; 941acdf5bf4SSatish Balay if (v || idx) { 942acdf5bf4SSatish Balay if (nztot) { 943acdf5bf4SSatish Balay /* Sort by increasing column numbers, assuming A and B already sorted */ 944acdf5bf4SSatish Balay int imark = -1; 945acdf5bf4SSatish Balay if (v) { 946acdf5bf4SSatish Balay *v = v_p = mat->rowvalues; 947acdf5bf4SSatish Balay for ( i=0; i<nzB; i++ ) { 948d9d09a02SSatish Balay if (cmap[cworkB[i]/bs] < cstart) v_p[i] = vworkB[i]; 949acdf5bf4SSatish Balay else break; 950acdf5bf4SSatish Balay } 951acdf5bf4SSatish Balay imark = i; 952acdf5bf4SSatish Balay for ( i=0; i<nzA; i++ ) v_p[imark+i] = vworkA[i]; 953acdf5bf4SSatish Balay for ( i=imark; i<nzB; i++ ) v_p[nzA+i] = vworkB[i]; 954acdf5bf4SSatish Balay } 955acdf5bf4SSatish Balay if (idx) { 956acdf5bf4SSatish Balay *idx = idx_p = mat->rowindices; 957acdf5bf4SSatish Balay if (imark > -1) { 958acdf5bf4SSatish Balay for ( i=0; i<imark; i++ ) { 959bd16c2feSSatish Balay idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs; 960acdf5bf4SSatish Balay } 961acdf5bf4SSatish Balay } else { 962acdf5bf4SSatish Balay for ( i=0; i<nzB; i++ ) { 963d9d09a02SSatish Balay if (cmap[cworkB[i]/bs] < cstart) 964d9d09a02SSatish Balay idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ; 965acdf5bf4SSatish Balay else break; 966acdf5bf4SSatish Balay } 967acdf5bf4SSatish Balay imark = i; 968acdf5bf4SSatish Balay } 969d9d09a02SSatish Balay for ( i=0; i<nzA; i++ ) idx_p[imark+i] = cstart*bs + cworkA[i]; 970d9d09a02SSatish Balay for ( i=imark; i<nzB; i++ ) idx_p[nzA+i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ; 971acdf5bf4SSatish Balay } 972acdf5bf4SSatish Balay } 973d212a18eSSatish Balay else { 974d212a18eSSatish Balay if (idx) *idx = 0; 975d212a18eSSatish Balay if (v) *v = 0; 976d212a18eSSatish Balay } 977acdf5bf4SSatish Balay } 978acdf5bf4SSatish Balay *nz = nztot; 979acdf5bf4SSatish Balay ierr = (*mat->A->ops.restorerow)(mat->A,lrow,&nzA,pcA,pvA); CHKERRQ(ierr); 980acdf5bf4SSatish Balay ierr = (*mat->B->ops.restorerow)(mat->B,lrow,&nzB,pcB,pvB); CHKERRQ(ierr); 981acdf5bf4SSatish Balay return 0; 982acdf5bf4SSatish Balay } 983acdf5bf4SSatish Balay 9845615d1e5SSatish Balay #undef __FUNC__ 9855615d1e5SSatish Balay #define __FUNC__ "MatRestoreRow_MPIBAIJ" 986acdf5bf4SSatish Balay int MatRestoreRow_MPIBAIJ(Mat mat,int row,int *nz,int **idx,Scalar **v) 987acdf5bf4SSatish Balay { 988acdf5bf4SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *) mat->data; 989acdf5bf4SSatish Balay if (baij->getrowactive == PETSC_FALSE) { 990e3372554SBarry Smith SETERRQ(1,0,"MatGetRow not called"); 991acdf5bf4SSatish Balay } 992acdf5bf4SSatish Balay baij->getrowactive = PETSC_FALSE; 993acdf5bf4SSatish Balay return 0; 994acdf5bf4SSatish Balay } 995acdf5bf4SSatish Balay 9965615d1e5SSatish Balay #undef __FUNC__ 9975615d1e5SSatish Balay #define __FUNC__ "MatGetBlockSize_MPIBAIJ" 9985a838052SSatish Balay static int MatGetBlockSize_MPIBAIJ(Mat mat,int *bs) 9995a838052SSatish Balay { 10005a838052SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *) mat->data; 10015a838052SSatish Balay *bs = baij->bs; 10025a838052SSatish Balay return 0; 10035a838052SSatish Balay } 10045a838052SSatish Balay 10055615d1e5SSatish Balay #undef __FUNC__ 10065615d1e5SSatish Balay #define __FUNC__ "MatZeroEntries_MPIBAIJ" 100758667388SSatish Balay static int MatZeroEntries_MPIBAIJ(Mat A) 100858667388SSatish Balay { 100958667388SSatish Balay Mat_MPIBAIJ *l = (Mat_MPIBAIJ *) A->data; 101058667388SSatish Balay int ierr; 101158667388SSatish Balay ierr = MatZeroEntries(l->A); CHKERRQ(ierr); 101258667388SSatish Balay ierr = MatZeroEntries(l->B); CHKERRQ(ierr); 101358667388SSatish Balay return 0; 101458667388SSatish Balay } 10150ac07820SSatish Balay 10165615d1e5SSatish Balay #undef __FUNC__ 10175615d1e5SSatish Balay #define __FUNC__ "MatGetInfo_MPIBAIJ" 10184e220ebcSLois Curfman McInnes static int MatGetInfo_MPIBAIJ(Mat matin,MatInfoType flag,MatInfo *info) 10190ac07820SSatish Balay { 10204e220ebcSLois Curfman McInnes Mat_MPIBAIJ *a = (Mat_MPIBAIJ *) matin->data; 10214e220ebcSLois Curfman McInnes Mat A = a->A, B = a->B; 10227d57db60SLois Curfman McInnes int ierr; 10237d57db60SLois Curfman McInnes double isend[5], irecv[5]; 10240ac07820SSatish Balay 10254e220ebcSLois Curfman McInnes info->rows_global = (double)a->M; 10264e220ebcSLois Curfman McInnes info->columns_global = (double)a->N; 10274e220ebcSLois Curfman McInnes info->rows_local = (double)a->m; 10284e220ebcSLois Curfman McInnes info->columns_local = (double)a->N; 10294e220ebcSLois Curfman McInnes info->block_size = (double)a->bs; 10304e220ebcSLois Curfman McInnes ierr = MatGetInfo(A,MAT_LOCAL,info); CHKERRQ(ierr); 10314e220ebcSLois Curfman McInnes isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->memory; 10324e220ebcSLois Curfman McInnes ierr = MatGetInfo(B,MAT_LOCAL,info); CHKERRQ(ierr); 10334e220ebcSLois Curfman McInnes isend[0] += info->nz_used; isend[1] += info->nz_allocated; isend[2] += info->memory; 10340ac07820SSatish Balay if (flag == MAT_LOCAL) { 10354e220ebcSLois Curfman McInnes info->nz_used = isend[0]; 10364e220ebcSLois Curfman McInnes info->nz_allocated = isend[1]; 10374e220ebcSLois Curfman McInnes info->nz_unneeded = isend[2]; 10384e220ebcSLois Curfman McInnes info->memory = isend[3]; 10394e220ebcSLois Curfman McInnes info->mallocs = isend[4]; 10400ac07820SSatish Balay } else if (flag == MAT_GLOBAL_MAX) { 10410ac07820SSatish Balay MPI_Allreduce(isend,irecv,3,MPI_INT,MPI_MAX,matin->comm); 10424e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 10434e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 10444e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 10454e220ebcSLois Curfman McInnes info->memory = irecv[3]; 10464e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 10470ac07820SSatish Balay } else if (flag == MAT_GLOBAL_SUM) { 10480ac07820SSatish Balay MPI_Allreduce(isend,irecv,3,MPI_INT,MPI_SUM,matin->comm); 10494e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 10504e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 10514e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 10524e220ebcSLois Curfman McInnes info->memory = irecv[3]; 10534e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 10540ac07820SSatish Balay } 10554e220ebcSLois Curfman McInnes info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */ 10564e220ebcSLois Curfman McInnes info->fill_ratio_needed = 0; 10574e220ebcSLois Curfman McInnes info->factor_mallocs = 0; 10580ac07820SSatish Balay return 0; 10590ac07820SSatish Balay } 10600ac07820SSatish Balay 10615615d1e5SSatish Balay #undef __FUNC__ 10625615d1e5SSatish Balay #define __FUNC__ "MatSetOption_MPIBAIJ" 106358667388SSatish Balay static int MatSetOption_MPIBAIJ(Mat A,MatOption op) 106458667388SSatish Balay { 106558667388SSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ *) A->data; 106658667388SSatish Balay 106758667388SSatish Balay if (op == MAT_NO_NEW_NONZERO_LOCATIONS || 106858667388SSatish Balay op == MAT_YES_NEW_NONZERO_LOCATIONS || 10696da5968aSLois Curfman McInnes op == MAT_COLUMNS_UNSORTED || 1070b1fbbac0SLois Curfman McInnes op == MAT_COLUMNS_SORTED) { 1071b1fbbac0SLois Curfman McInnes MatSetOption(a->A,op); 1072b1fbbac0SLois Curfman McInnes MatSetOption(a->B,op); 1073b1fbbac0SLois Curfman McInnes } else if (op == MAT_ROW_ORIENTED) { 1074aeafbbfcSLois Curfman McInnes a->roworiented = 1; 107558667388SSatish Balay MatSetOption(a->A,op); 107658667388SSatish Balay MatSetOption(a->B,op); 1077b1fbbac0SLois Curfman McInnes } else if (op == MAT_ROWS_SORTED || 10786da5968aSLois Curfman McInnes op == MAT_ROWS_UNSORTED || 107958667388SSatish Balay op == MAT_SYMMETRIC || 108058667388SSatish Balay op == MAT_STRUCTURALLY_SYMMETRIC || 108158667388SSatish Balay op == MAT_YES_NEW_DIAGONALS) 108258667388SSatish Balay PLogInfo(A,"Info:MatSetOption_MPIBAIJ:Option ignored\n"); 108358667388SSatish Balay else if (op == MAT_COLUMN_ORIENTED) { 108458667388SSatish Balay a->roworiented = 0; 108558667388SSatish Balay MatSetOption(a->A,op); 108658667388SSatish Balay MatSetOption(a->B,op); 108790f02eecSBarry Smith } else if (op == MAT_IGNORE_OFF_PROCESSOR_ENTRIES) { 108890f02eecSBarry Smith a->donotstash = 1; 108990f02eecSBarry Smith } else if (op == MAT_NO_NEW_DIAGONALS) 1090e3372554SBarry Smith {SETERRQ(PETSC_ERR_SUP,0,"MAT_NO_NEW_DIAGONALS");} 109158667388SSatish Balay else 1092e3372554SBarry Smith {SETERRQ(PETSC_ERR_SUP,0,"unknown option");} 109358667388SSatish Balay return 0; 109458667388SSatish Balay } 109558667388SSatish Balay 10965615d1e5SSatish Balay #undef __FUNC__ 10975615d1e5SSatish Balay #define __FUNC__ "MatTranspose_MPIBAIJ(" 10980ac07820SSatish Balay static int MatTranspose_MPIBAIJ(Mat A,Mat *matout) 10990ac07820SSatish Balay { 11000ac07820SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *) A->data; 11010ac07820SSatish Balay Mat_SeqBAIJ *Aloc; 11020ac07820SSatish Balay Mat B; 11030ac07820SSatish Balay int ierr,M=baij->M,N=baij->N,*ai,*aj,row,i,*rvals,j,k,col; 11040ac07820SSatish Balay int bs=baij->bs,mbs=baij->mbs; 11050ac07820SSatish Balay Scalar *a; 11060ac07820SSatish Balay 11070ac07820SSatish Balay if (matout == PETSC_NULL && M != N) 1108e3372554SBarry Smith SETERRQ(1,0,"Square matrix only for in-place"); 11090ac07820SSatish Balay ierr = MatCreateMPIBAIJ(A->comm,baij->bs,PETSC_DECIDE,PETSC_DECIDE,N,M,0,PETSC_NULL,0,PETSC_NULL,&B); 11100ac07820SSatish Balay CHKERRQ(ierr); 11110ac07820SSatish Balay 11120ac07820SSatish Balay /* copy over the A part */ 11130ac07820SSatish Balay Aloc = (Mat_SeqBAIJ*) baij->A->data; 11140ac07820SSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 11150ac07820SSatish Balay row = baij->rstart; 11160ac07820SSatish Balay rvals = (int *) PetscMalloc(bs*sizeof(int)); CHKPTRQ(rvals); 11170ac07820SSatish Balay 11180ac07820SSatish Balay for ( i=0; i<mbs; i++ ) { 11190ac07820SSatish Balay rvals[0] = bs*(baij->rstart + i); 11200ac07820SSatish Balay for ( j=1; j<bs; j++ ) { rvals[j] = rvals[j-1] + 1; } 11210ac07820SSatish Balay for ( j=ai[i]; j<ai[i+1]; j++ ) { 11220ac07820SSatish Balay col = (baij->cstart+aj[j])*bs; 11230ac07820SSatish Balay for (k=0; k<bs; k++ ) { 11240ac07820SSatish Balay ierr = MatSetValues(B,1,&col,bs,rvals,a,INSERT_VALUES);CHKERRQ(ierr); 11250ac07820SSatish Balay col++; a += bs; 11260ac07820SSatish Balay } 11270ac07820SSatish Balay } 11280ac07820SSatish Balay } 11290ac07820SSatish Balay /* copy over the B part */ 11300ac07820SSatish Balay Aloc = (Mat_SeqBAIJ*) baij->B->data; 11310ac07820SSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 11320ac07820SSatish Balay row = baij->rstart*bs; 11330ac07820SSatish Balay for ( i=0; i<mbs; i++ ) { 11340ac07820SSatish Balay rvals[0] = bs*(baij->rstart + i); 11350ac07820SSatish Balay for ( j=1; j<bs; j++ ) { rvals[j] = rvals[j-1] + 1; } 11360ac07820SSatish Balay for ( j=ai[i]; j<ai[i+1]; j++ ) { 11370ac07820SSatish Balay col = baij->garray[aj[j]]*bs; 11380ac07820SSatish Balay for (k=0; k<bs; k++ ) { 11390ac07820SSatish Balay ierr = MatSetValues(B,1,&col,bs,rvals,a,INSERT_VALUES);CHKERRQ(ierr); 11400ac07820SSatish Balay col++; a += bs; 11410ac07820SSatish Balay } 11420ac07820SSatish Balay } 11430ac07820SSatish Balay } 11440ac07820SSatish Balay PetscFree(rvals); 11450ac07820SSatish Balay ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY); CHKERRQ(ierr); 11460ac07820SSatish Balay ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY); CHKERRQ(ierr); 11470ac07820SSatish Balay 11480ac07820SSatish Balay if (matout != PETSC_NULL) { 11490ac07820SSatish Balay *matout = B; 11500ac07820SSatish Balay } else { 11510ac07820SSatish Balay /* This isn't really an in-place transpose .... but free data structures from baij */ 11520ac07820SSatish Balay PetscFree(baij->rowners); 11530ac07820SSatish Balay ierr = MatDestroy(baij->A); CHKERRQ(ierr); 11540ac07820SSatish Balay ierr = MatDestroy(baij->B); CHKERRQ(ierr); 11550ac07820SSatish Balay if (baij->colmap) PetscFree(baij->colmap); 11560ac07820SSatish Balay if (baij->garray) PetscFree(baij->garray); 11570ac07820SSatish Balay if (baij->lvec) VecDestroy(baij->lvec); 11580ac07820SSatish Balay if (baij->Mvctx) VecScatterDestroy(baij->Mvctx); 11590ac07820SSatish Balay PetscFree(baij); 11600ac07820SSatish Balay PetscMemcpy(A,B,sizeof(struct _Mat)); 11610ac07820SSatish Balay PetscHeaderDestroy(B); 11620ac07820SSatish Balay } 11630ac07820SSatish Balay return 0; 11640ac07820SSatish Balay } 11650e95ebc0SSatish Balay 11665615d1e5SSatish Balay #undef __FUNC__ 11675615d1e5SSatish Balay #define __FUNC__ "MatDiagonalScale_MPIBAIJ" 11680e95ebc0SSatish Balay int MatDiagonalScale_MPIBAIJ(Mat A,Vec ll,Vec rr) 11690e95ebc0SSatish Balay { 11700e95ebc0SSatish Balay Mat a = ((Mat_MPIBAIJ *) A->data)->A; 11710e95ebc0SSatish Balay Mat b = ((Mat_MPIBAIJ *) A->data)->B; 11720e95ebc0SSatish Balay int ierr,s1,s2,s3; 11730e95ebc0SSatish Balay 11740e95ebc0SSatish Balay if (ll) { 11750e95ebc0SSatish Balay ierr = VecGetLocalSize(ll,&s1); CHKERRQ(ierr); 11760e95ebc0SSatish Balay ierr = MatGetLocalSize(A,&s2,&s3); CHKERRQ(ierr); 1177e3372554SBarry Smith if (s1!=s2) SETERRQ(1,0,"non-conforming local sizes"); 11780e95ebc0SSatish Balay ierr = MatDiagonalScale(a,ll,0); CHKERRQ(ierr); 11790e95ebc0SSatish Balay ierr = MatDiagonalScale(b,ll,0); CHKERRQ(ierr); 11800e95ebc0SSatish Balay } 1181e3372554SBarry Smith if (rr) SETERRQ(1,0,"not supported for right vector"); 11820e95ebc0SSatish Balay return 0; 11830e95ebc0SSatish Balay } 11840e95ebc0SSatish Balay 11850ac07820SSatish Balay /* the code does not do the diagonal entries correctly unless the 11860ac07820SSatish Balay matrix is square and the column and row owerships are identical. 11870ac07820SSatish Balay This is a BUG. The only way to fix it seems to be to access 11880ac07820SSatish Balay baij->A and baij->B directly and not through the MatZeroRows() 11890ac07820SSatish Balay routine. 11900ac07820SSatish Balay */ 11915615d1e5SSatish Balay #undef __FUNC__ 11925615d1e5SSatish Balay #define __FUNC__ "MatZeroRows_MPIBAIJ" 11930ac07820SSatish Balay static int MatZeroRows_MPIBAIJ(Mat A,IS is,Scalar *diag) 11940ac07820SSatish Balay { 11950ac07820SSatish Balay Mat_MPIBAIJ *l = (Mat_MPIBAIJ *) A->data; 11960ac07820SSatish Balay int i,ierr,N, *rows,*owners = l->rowners,size = l->size; 11970ac07820SSatish Balay int *procs,*nprocs,j,found,idx,nsends,*work; 11980ac07820SSatish Balay int nmax,*svalues,*starts,*owner,nrecvs,rank = l->rank; 11990ac07820SSatish Balay int *rvalues,tag = A->tag,count,base,slen,n,*source; 12000ac07820SSatish Balay int *lens,imdex,*lrows,*values,bs=l->bs; 12010ac07820SSatish Balay MPI_Comm comm = A->comm; 12020ac07820SSatish Balay MPI_Request *send_waits,*recv_waits; 12030ac07820SSatish Balay MPI_Status recv_status,*send_status; 12040ac07820SSatish Balay IS istmp; 12050ac07820SSatish Balay 12060ac07820SSatish Balay ierr = ISGetSize(is,&N); CHKERRQ(ierr); 12070ac07820SSatish Balay ierr = ISGetIndices(is,&rows); CHKERRQ(ierr); 12080ac07820SSatish Balay 12090ac07820SSatish Balay /* first count number of contributors to each processor */ 12100ac07820SSatish Balay nprocs = (int *) PetscMalloc( 2*size*sizeof(int) ); CHKPTRQ(nprocs); 12110ac07820SSatish Balay PetscMemzero(nprocs,2*size*sizeof(int)); procs = nprocs + size; 12120ac07820SSatish Balay owner = (int *) PetscMalloc((N+1)*sizeof(int)); CHKPTRQ(owner); /* see note*/ 12130ac07820SSatish Balay for ( i=0; i<N; i++ ) { 12140ac07820SSatish Balay idx = rows[i]; 12150ac07820SSatish Balay found = 0; 12160ac07820SSatish Balay for ( j=0; j<size; j++ ) { 12170ac07820SSatish Balay if (idx >= owners[j]*bs && idx < owners[j+1]*bs) { 12180ac07820SSatish Balay nprocs[j]++; procs[j] = 1; owner[i] = j; found = 1; break; 12190ac07820SSatish Balay } 12200ac07820SSatish Balay } 1221e3372554SBarry Smith if (!found) SETERRQ(1,0,"Index out of range"); 12220ac07820SSatish Balay } 12230ac07820SSatish Balay nsends = 0; for ( i=0; i<size; i++ ) { nsends += procs[i];} 12240ac07820SSatish Balay 12250ac07820SSatish Balay /* inform other processors of number of messages and max length*/ 12260ac07820SSatish Balay work = (int *) PetscMalloc( size*sizeof(int) ); CHKPTRQ(work); 12270ac07820SSatish Balay MPI_Allreduce( procs, work,size,MPI_INT,MPI_SUM,comm); 12280ac07820SSatish Balay nrecvs = work[rank]; 12290ac07820SSatish Balay MPI_Allreduce( nprocs, work,size,MPI_INT,MPI_MAX,comm); 12300ac07820SSatish Balay nmax = work[rank]; 12310ac07820SSatish Balay PetscFree(work); 12320ac07820SSatish Balay 12330ac07820SSatish Balay /* post receives: */ 12340ac07820SSatish Balay rvalues = (int *) PetscMalloc((nrecvs+1)*(nmax+1)*sizeof(int)); /*see note */ 12350ac07820SSatish Balay CHKPTRQ(rvalues); 12360ac07820SSatish Balay recv_waits = (MPI_Request *) PetscMalloc((nrecvs+1)*sizeof(MPI_Request)); 12370ac07820SSatish Balay CHKPTRQ(recv_waits); 12380ac07820SSatish Balay for ( i=0; i<nrecvs; i++ ) { 12390ac07820SSatish Balay MPI_Irecv(rvalues+nmax*i,nmax,MPI_INT,MPI_ANY_SOURCE,tag,comm,recv_waits+i); 12400ac07820SSatish Balay } 12410ac07820SSatish Balay 12420ac07820SSatish Balay /* do sends: 12430ac07820SSatish Balay 1) starts[i] gives the starting index in svalues for stuff going to 12440ac07820SSatish Balay the ith processor 12450ac07820SSatish Balay */ 12460ac07820SSatish Balay svalues = (int *) PetscMalloc( (N+1)*sizeof(int) ); CHKPTRQ(svalues); 12470ac07820SSatish Balay send_waits = (MPI_Request *) PetscMalloc( (nsends+1)*sizeof(MPI_Request)); 12480ac07820SSatish Balay CHKPTRQ(send_waits); 12490ac07820SSatish Balay starts = (int *) PetscMalloc( (size+1)*sizeof(int) ); CHKPTRQ(starts); 12500ac07820SSatish Balay starts[0] = 0; 12510ac07820SSatish Balay for ( i=1; i<size; i++ ) { starts[i] = starts[i-1] + nprocs[i-1];} 12520ac07820SSatish Balay for ( i=0; i<N; i++ ) { 12530ac07820SSatish Balay svalues[starts[owner[i]]++] = rows[i]; 12540ac07820SSatish Balay } 12550ac07820SSatish Balay ISRestoreIndices(is,&rows); 12560ac07820SSatish Balay 12570ac07820SSatish Balay starts[0] = 0; 12580ac07820SSatish Balay for ( i=1; i<size+1; i++ ) { starts[i] = starts[i-1] + nprocs[i-1];} 12590ac07820SSatish Balay count = 0; 12600ac07820SSatish Balay for ( i=0; i<size; i++ ) { 12610ac07820SSatish Balay if (procs[i]) { 12620ac07820SSatish Balay MPI_Isend(svalues+starts[i],nprocs[i],MPI_INT,i,tag,comm,send_waits+count++); 12630ac07820SSatish Balay } 12640ac07820SSatish Balay } 12650ac07820SSatish Balay PetscFree(starts); 12660ac07820SSatish Balay 12670ac07820SSatish Balay base = owners[rank]*bs; 12680ac07820SSatish Balay 12690ac07820SSatish Balay /* wait on receives */ 12700ac07820SSatish Balay lens = (int *) PetscMalloc( 2*(nrecvs+1)*sizeof(int) ); CHKPTRQ(lens); 12710ac07820SSatish Balay source = lens + nrecvs; 12720ac07820SSatish Balay count = nrecvs; slen = 0; 12730ac07820SSatish Balay while (count) { 12740ac07820SSatish Balay MPI_Waitany(nrecvs,recv_waits,&imdex,&recv_status); 12750ac07820SSatish Balay /* unpack receives into our local space */ 12760ac07820SSatish Balay MPI_Get_count(&recv_status,MPI_INT,&n); 12770ac07820SSatish Balay source[imdex] = recv_status.MPI_SOURCE; 12780ac07820SSatish Balay lens[imdex] = n; 12790ac07820SSatish Balay slen += n; 12800ac07820SSatish Balay count--; 12810ac07820SSatish Balay } 12820ac07820SSatish Balay PetscFree(recv_waits); 12830ac07820SSatish Balay 12840ac07820SSatish Balay /* move the data into the send scatter */ 12850ac07820SSatish Balay lrows = (int *) PetscMalloc( (slen+1)*sizeof(int) ); CHKPTRQ(lrows); 12860ac07820SSatish Balay count = 0; 12870ac07820SSatish Balay for ( i=0; i<nrecvs; i++ ) { 12880ac07820SSatish Balay values = rvalues + i*nmax; 12890ac07820SSatish Balay for ( j=0; j<lens[i]; j++ ) { 12900ac07820SSatish Balay lrows[count++] = values[j] - base; 12910ac07820SSatish Balay } 12920ac07820SSatish Balay } 12930ac07820SSatish Balay PetscFree(rvalues); PetscFree(lens); 12940ac07820SSatish Balay PetscFree(owner); PetscFree(nprocs); 12950ac07820SSatish Balay 12960ac07820SSatish Balay /* actually zap the local rows */ 1297537820f0SBarry Smith ierr = ISCreateGeneral(MPI_COMM_SELF,slen,lrows,&istmp);CHKERRQ(ierr); 12980ac07820SSatish Balay PLogObjectParent(A,istmp); 12990ac07820SSatish Balay PetscFree(lrows); 13000ac07820SSatish Balay ierr = MatZeroRows(l->A,istmp,diag); CHKERRQ(ierr); 13010ac07820SSatish Balay ierr = MatZeroRows(l->B,istmp,0); CHKERRQ(ierr); 13020ac07820SSatish Balay ierr = ISDestroy(istmp); CHKERRQ(ierr); 13030ac07820SSatish Balay 13040ac07820SSatish Balay /* wait on sends */ 13050ac07820SSatish Balay if (nsends) { 13060ac07820SSatish Balay send_status = (MPI_Status *) PetscMalloc(nsends*sizeof(MPI_Status)); 13070ac07820SSatish Balay CHKPTRQ(send_status); 13080ac07820SSatish Balay MPI_Waitall(nsends,send_waits,send_status); 13090ac07820SSatish Balay PetscFree(send_status); 13100ac07820SSatish Balay } 13110ac07820SSatish Balay PetscFree(send_waits); PetscFree(svalues); 13120ac07820SSatish Balay 13130ac07820SSatish Balay return 0; 13140ac07820SSatish Balay } 1315ba4ca20aSSatish Balay extern int MatPrintHelp_SeqBAIJ(Mat); 13165615d1e5SSatish Balay #undef __FUNC__ 13175615d1e5SSatish Balay #define __FUNC__ "MatPrintHelp_MPIBAIJ" 1318ba4ca20aSSatish Balay static int MatPrintHelp_MPIBAIJ(Mat A) 1319ba4ca20aSSatish Balay { 1320ba4ca20aSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*) A->data; 1321ba4ca20aSSatish Balay 1322ba4ca20aSSatish Balay if (!a->rank) return MatPrintHelp_SeqBAIJ(a->A); 1323ba4ca20aSSatish Balay else return 0; 1324ba4ca20aSSatish Balay } 13250ac07820SSatish Balay 13265615d1e5SSatish Balay #undef __FUNC__ 13275615d1e5SSatish Balay #define __FUNC__ "MatSetUnfactored_MPIBAIJ" 1328bb5a7306SBarry Smith static int MatSetUnfactored_MPIBAIJ(Mat A) 1329bb5a7306SBarry Smith { 1330bb5a7306SBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ*) A->data; 1331bb5a7306SBarry Smith int ierr; 1332bb5a7306SBarry Smith ierr = MatSetUnfactored(a->A); CHKERRQ(ierr); 1333bb5a7306SBarry Smith return 0; 1334bb5a7306SBarry Smith } 1335bb5a7306SBarry Smith 13360ac07820SSatish Balay static int MatConvertSameType_MPIBAIJ(Mat,Mat *,int); 13370ac07820SSatish Balay 133879bdfe76SSatish Balay /* -------------------------------------------------------------------*/ 133979bdfe76SSatish Balay static struct _MatOps MatOps = { 1340bd16c2feSSatish Balay MatSetValues_MPIBAIJ,MatGetRow_MPIBAIJ,MatRestoreRow_MPIBAIJ,MatMult_MPIBAIJ, 13414c50302cSBarry Smith MatMultAdd_MPIBAIJ,MatMultTrans_MPIBAIJ,MatMultTransAdd_MPIBAIJ,0, 13424c50302cSBarry Smith 0,0,0,0, 13430ac07820SSatish Balay 0,0,MatTranspose_MPIBAIJ,MatGetInfo_MPIBAIJ, 13440e95ebc0SSatish Balay 0,MatGetDiagonal_MPIBAIJ,MatDiagonalScale_MPIBAIJ,MatNorm_MPIBAIJ, 134558667388SSatish Balay MatAssemblyBegin_MPIBAIJ,MatAssemblyEnd_MPIBAIJ,0,MatSetOption_MPIBAIJ, 13464c50302cSBarry Smith MatZeroEntries_MPIBAIJ,MatZeroRows_MPIBAIJ,0, 13474c50302cSBarry Smith 0,0,0,MatGetSize_MPIBAIJ, 13484c50302cSBarry Smith MatGetLocalSize_MPIBAIJ,MatGetOwnershipRange_MPIBAIJ,0,0, 134994a9d846SBarry Smith 0,0,MatConvertSameType_MPIBAIJ,0,0, 1350d212a18eSSatish Balay 0,0,0,MatGetSubMatrices_MPIBAIJ, 1351ba4ca20aSSatish Balay MatIncreaseOverlap_MPIBAIJ,MatGetValues_MPIBAIJ,0,MatPrintHelp_MPIBAIJ, 1352bb5a7306SBarry Smith MatScale_MPIBAIJ,0,0,0,MatGetBlockSize_MPIBAIJ, 1353*ab26458aSBarry Smith 0,0,0,0,0,0,MatSetUnfactored_MPIBAIJ,0,MatSetValuesBlocked_MPIBAIJ}; 135479bdfe76SSatish Balay 135579bdfe76SSatish Balay 13565615d1e5SSatish Balay #undef __FUNC__ 13575615d1e5SSatish Balay #define __FUNC__ "MatCreateMPIBAIJ" 135879bdfe76SSatish Balay /*@C 135979bdfe76SSatish Balay MatCreateMPIBAIJ - Creates a sparse parallel matrix in block AIJ format 136079bdfe76SSatish Balay (block compressed row). For good matrix assembly performance 136179bdfe76SSatish Balay the user should preallocate the matrix storage by setting the parameters 136279bdfe76SSatish Balay d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 136379bdfe76SSatish Balay performance can be increased by more than a factor of 50. 136479bdfe76SSatish Balay 136579bdfe76SSatish Balay Input Parameters: 136679bdfe76SSatish Balay . comm - MPI communicator 136779bdfe76SSatish Balay . bs - size of blockk 136879bdfe76SSatish Balay . m - number of local rows (or PETSC_DECIDE to have calculated if M is given) 136992e8d321SLois Curfman McInnes This value should be the same as the local size used in creating the 137092e8d321SLois Curfman McInnes y vector for the matrix-vector product y = Ax. 137192e8d321SLois Curfman McInnes . n - number of local columns (or PETSC_DECIDE to have calculated if N is given) 137292e8d321SLois Curfman McInnes This value should be the same as the local size used in creating the 137392e8d321SLois Curfman McInnes x vector for the matrix-vector product y = Ax. 137479bdfe76SSatish Balay . M - number of global rows (or PETSC_DECIDE to have calculated if m is given) 137592e8d321SLois Curfman McInnes . N - number of global columns (or PETSC_DECIDE to have calculated if n is given) 137679bdfe76SSatish Balay . d_nz - number of block nonzeros per block row in diagonal portion of local 137779bdfe76SSatish Balay submatrix (same for all local rows) 137892e8d321SLois Curfman McInnes . d_nzz - array containing the number of block nonzeros in the various block rows 137992e8d321SLois Curfman McInnes of the in diagonal portion of the local (possibly different for each block 138092e8d321SLois Curfman McInnes row) or PETSC_NULL. You must leave room for the diagonal entry even if 138192e8d321SLois Curfman McInnes it is zero. 138292e8d321SLois Curfman McInnes . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 138379bdfe76SSatish Balay submatrix (same for all local rows). 138492e8d321SLois Curfman McInnes . o_nzz - array containing the number of nonzeros in the various block rows of the 138592e8d321SLois Curfman McInnes off-diagonal portion of the local submatrix (possibly different for 138692e8d321SLois Curfman McInnes each block row) or PETSC_NULL. 138779bdfe76SSatish Balay 138879bdfe76SSatish Balay Output Parameter: 138979bdfe76SSatish Balay . A - the matrix 139079bdfe76SSatish Balay 139179bdfe76SSatish Balay Notes: 139279bdfe76SSatish Balay The user MUST specify either the local or global matrix dimensions 139379bdfe76SSatish Balay (possibly both). 139479bdfe76SSatish Balay 139579bdfe76SSatish Balay Storage Information: 139679bdfe76SSatish Balay For a square global matrix we define each processor's diagonal portion 139779bdfe76SSatish Balay to be its local rows and the corresponding columns (a square submatrix); 139879bdfe76SSatish Balay each processor's off-diagonal portion encompasses the remainder of the 139979bdfe76SSatish Balay local matrix (a rectangular submatrix). 140079bdfe76SSatish Balay 140179bdfe76SSatish Balay The user can specify preallocated storage for the diagonal part of 140279bdfe76SSatish Balay the local submatrix with either d_nz or d_nnz (not both). Set 140379bdfe76SSatish Balay d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic 140479bdfe76SSatish Balay memory allocation. Likewise, specify preallocated storage for the 140579bdfe76SSatish Balay off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 140679bdfe76SSatish Balay 140779bdfe76SSatish Balay Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 140879bdfe76SSatish Balay the figure below we depict these three local rows and all columns (0-11). 140979bdfe76SSatish Balay 141079bdfe76SSatish Balay $ 0 1 2 3 4 5 6 7 8 9 10 11 141179bdfe76SSatish Balay $ ------------------- 141279bdfe76SSatish Balay $ row 3 | o o o d d d o o o o o o 141379bdfe76SSatish Balay $ row 4 | o o o d d d o o o o o o 141479bdfe76SSatish Balay $ row 5 | o o o d d d o o o o o o 141579bdfe76SSatish Balay $ ------------------- 141679bdfe76SSatish Balay $ 141779bdfe76SSatish Balay 141879bdfe76SSatish Balay Thus, any entries in the d locations are stored in the d (diagonal) 141979bdfe76SSatish Balay submatrix, and any entries in the o locations are stored in the 142079bdfe76SSatish Balay o (off-diagonal) submatrix. Note that the d and the o submatrices are 142157b952d6SSatish Balay stored simply in the MATSEQBAIJ format for compressed row storage. 142279bdfe76SSatish Balay 142379bdfe76SSatish Balay Now d_nz should indicate the number of nonzeros per row in the d matrix, 142479bdfe76SSatish Balay and o_nz should indicate the number of nonzeros per row in the o matrix. 142579bdfe76SSatish Balay In general, for PDE problems in which most nonzeros are near the diagonal, 142692e8d321SLois Curfman McInnes one expects d_nz >> o_nz. For large problems you MUST preallocate memory 142792e8d321SLois Curfman McInnes or you will get TERRIBLE performance; see the users' manual chapter on 14286da5968aSLois Curfman McInnes matrices. 142979bdfe76SSatish Balay 143092e8d321SLois Curfman McInnes .keywords: matrix, block, aij, compressed row, sparse, parallel 143179bdfe76SSatish Balay 143279bdfe76SSatish Balay .seealso: MatCreate(), MatCreateSeqBAIJ(), MatSetValues() 143379bdfe76SSatish Balay @*/ 143479bdfe76SSatish Balay int MatCreateMPIBAIJ(MPI_Comm comm,int bs,int m,int n,int M,int N, 143579bdfe76SSatish Balay int d_nz,int *d_nnz,int o_nz,int *o_nnz,Mat *A) 143679bdfe76SSatish Balay { 143779bdfe76SSatish Balay Mat B; 143879bdfe76SSatish Balay Mat_MPIBAIJ *b; 14394c50302cSBarry Smith int ierr, i,sum[2],work[2],mbs,nbs,Mbs=PETSC_DECIDE,Nbs=PETSC_DECIDE,size; 144079bdfe76SSatish Balay 1441e3372554SBarry Smith if (bs < 1) SETERRQ(1,0,"invalid block size specified"); 144279bdfe76SSatish Balay *A = 0; 144379bdfe76SSatish Balay PetscHeaderCreate(B,_Mat,MAT_COOKIE,MATMPIBAIJ,comm); 144479bdfe76SSatish Balay PLogObjectCreate(B); 144579bdfe76SSatish Balay B->data = (void *) (b = PetscNew(Mat_MPIBAIJ)); CHKPTRQ(b); 144679bdfe76SSatish Balay PetscMemzero(b,sizeof(Mat_MPIBAIJ)); 144779bdfe76SSatish Balay PetscMemcpy(&B->ops,&MatOps,sizeof(struct _MatOps)); 14484c50302cSBarry Smith MPI_Comm_size(comm,&size); 14494c50302cSBarry Smith if (size == 1) { 14504c50302cSBarry Smith B->ops.getrowij = MatGetRowIJ_MPIBAIJ; 14514c50302cSBarry Smith B->ops.restorerowij = MatRestoreRowIJ_MPIBAIJ; 14524c50302cSBarry Smith B->ops.lufactorsymbolic = MatLUFactorSymbolic_MPIBAIJ; 14534c50302cSBarry Smith B->ops.lufactornumeric = MatLUFactorNumeric_MPIBAIJ; 14544c50302cSBarry Smith B->ops.lufactor = MatLUFactor_MPIBAIJ; 14554c50302cSBarry Smith B->ops.solve = MatSolve_MPIBAIJ; 14564c50302cSBarry Smith B->ops.solveadd = MatSolveAdd_MPIBAIJ; 14574c50302cSBarry Smith B->ops.solvetrans = MatSolveTrans_MPIBAIJ; 14584c50302cSBarry Smith B->ops.solvetransadd = MatSolveTransAdd_MPIBAIJ; 14594c50302cSBarry Smith B->ops.ilufactorsymbolic = MatILUFactorSymbolic_MPIBAIJ; 14604c50302cSBarry Smith } 14614c50302cSBarry Smith 146279bdfe76SSatish Balay B->destroy = MatDestroy_MPIBAIJ; 146379bdfe76SSatish Balay B->view = MatView_MPIBAIJ; 146490f02eecSBarry Smith B->mapping = 0; 146579bdfe76SSatish Balay B->factor = 0; 146679bdfe76SSatish Balay B->assembled = PETSC_FALSE; 146779bdfe76SSatish Balay 146879bdfe76SSatish Balay b->insertmode = NOT_SET_VALUES; 146979bdfe76SSatish Balay MPI_Comm_rank(comm,&b->rank); 147079bdfe76SSatish Balay MPI_Comm_size(comm,&b->size); 147179bdfe76SSatish Balay 147279bdfe76SSatish Balay if ( m == PETSC_DECIDE && (d_nnz != PETSC_NULL || o_nnz != PETSC_NULL)) 1473e3372554SBarry Smith SETERRQ(1,0,"Cannot have PETSC_DECIDE rows but set d_nnz or o_nnz"); 1474e3372554SBarry Smith if ( M == PETSC_DECIDE && m == PETSC_DECIDE) SETERRQ(1,0,"either M or m should be specified"); 1475e3372554SBarry Smith if ( M == PETSC_DECIDE && n == PETSC_DECIDE)SETERRQ(1,0,"either N or n should be specified"); 1476cee3aa6bSSatish Balay if ( M != PETSC_DECIDE && m != PETSC_DECIDE) M = PETSC_DECIDE; 1477cee3aa6bSSatish Balay if ( N != PETSC_DECIDE && n != PETSC_DECIDE) N = PETSC_DECIDE; 147879bdfe76SSatish Balay 147979bdfe76SSatish Balay if (M == PETSC_DECIDE || N == PETSC_DECIDE) { 148079bdfe76SSatish Balay work[0] = m; work[1] = n; 148179bdfe76SSatish Balay mbs = m/bs; nbs = n/bs; 148279bdfe76SSatish Balay MPI_Allreduce( work, sum,2,MPI_INT,MPI_SUM,comm ); 148379bdfe76SSatish Balay if (M == PETSC_DECIDE) {M = sum[0]; Mbs = M/bs;} 148479bdfe76SSatish Balay if (N == PETSC_DECIDE) {N = sum[1]; Nbs = N/bs;} 148579bdfe76SSatish Balay } 148679bdfe76SSatish Balay if (m == PETSC_DECIDE) { 148779bdfe76SSatish Balay Mbs = M/bs; 1488e3372554SBarry Smith if (Mbs*bs != M) SETERRQ(1,0,"No of global rows must be divisible by blocksize"); 148979bdfe76SSatish Balay mbs = Mbs/b->size + ((Mbs % b->size) > b->rank); 149079bdfe76SSatish Balay m = mbs*bs; 149179bdfe76SSatish Balay } 149279bdfe76SSatish Balay if (n == PETSC_DECIDE) { 149379bdfe76SSatish Balay Nbs = N/bs; 1494e3372554SBarry Smith if (Nbs*bs != N) SETERRQ(1,0,"No of global cols must be divisible by blocksize"); 149579bdfe76SSatish Balay nbs = Nbs/b->size + ((Nbs % b->size) > b->rank); 149679bdfe76SSatish Balay n = nbs*bs; 149779bdfe76SSatish Balay } 1498e3372554SBarry Smith if (mbs*bs != m || nbs*bs != n) SETERRQ(1,0,"No of local rows, cols must be divisible by blocksize"); 149979bdfe76SSatish Balay 150079bdfe76SSatish Balay b->m = m; B->m = m; 150179bdfe76SSatish Balay b->n = n; B->n = n; 150279bdfe76SSatish Balay b->N = N; B->N = N; 150379bdfe76SSatish Balay b->M = M; B->M = M; 150479bdfe76SSatish Balay b->bs = bs; 150579bdfe76SSatish Balay b->bs2 = bs*bs; 150679bdfe76SSatish Balay b->mbs = mbs; 150779bdfe76SSatish Balay b->nbs = nbs; 150879bdfe76SSatish Balay b->Mbs = Mbs; 150979bdfe76SSatish Balay b->Nbs = Nbs; 151079bdfe76SSatish Balay 151179bdfe76SSatish Balay /* build local table of row and column ownerships */ 151279bdfe76SSatish Balay b->rowners = (int *) PetscMalloc(2*(b->size+2)*sizeof(int)); CHKPTRQ(b->rowners); 151379bdfe76SSatish Balay PLogObjectMemory(B,2*(b->size+2)*sizeof(int)+sizeof(struct _Mat)+sizeof(Mat_MPIBAIJ)); 15140ac07820SSatish Balay b->cowners = b->rowners + b->size + 2; 151579bdfe76SSatish Balay MPI_Allgather(&mbs,1,MPI_INT,b->rowners+1,1,MPI_INT,comm); 151679bdfe76SSatish Balay b->rowners[0] = 0; 151779bdfe76SSatish Balay for ( i=2; i<=b->size; i++ ) { 151879bdfe76SSatish Balay b->rowners[i] += b->rowners[i-1]; 151979bdfe76SSatish Balay } 152079bdfe76SSatish Balay b->rstart = b->rowners[b->rank]; 152179bdfe76SSatish Balay b->rend = b->rowners[b->rank+1]; 15224fa0d573SSatish Balay b->rstart_bs = b->rstart * bs; 15234fa0d573SSatish Balay b->rend_bs = b->rend * bs; 15244fa0d573SSatish Balay 152579bdfe76SSatish Balay MPI_Allgather(&nbs,1,MPI_INT,b->cowners+1,1,MPI_INT,comm); 152679bdfe76SSatish Balay b->cowners[0] = 0; 152779bdfe76SSatish Balay for ( i=2; i<=b->size; i++ ) { 152879bdfe76SSatish Balay b->cowners[i] += b->cowners[i-1]; 152979bdfe76SSatish Balay } 153079bdfe76SSatish Balay b->cstart = b->cowners[b->rank]; 153179bdfe76SSatish Balay b->cend = b->cowners[b->rank+1]; 15324fa0d573SSatish Balay b->cstart_bs = b->cstart * bs; 15334fa0d573SSatish Balay b->cend_bs = b->cend * bs; 153479bdfe76SSatish Balay 153579bdfe76SSatish Balay if (d_nz == PETSC_DEFAULT) d_nz = 5; 153679bdfe76SSatish Balay ierr = MatCreateSeqBAIJ(MPI_COMM_SELF,bs,m,n,d_nz,d_nnz,&b->A); CHKERRQ(ierr); 153779bdfe76SSatish Balay PLogObjectParent(B,b->A); 153879bdfe76SSatish Balay if (o_nz == PETSC_DEFAULT) o_nz = 0; 153979bdfe76SSatish Balay ierr = MatCreateSeqBAIJ(MPI_COMM_SELF,bs,m,N,o_nz,o_nnz,&b->B); CHKERRQ(ierr); 154079bdfe76SSatish Balay PLogObjectParent(B,b->B); 154179bdfe76SSatish Balay 154279bdfe76SSatish Balay /* build cache for off array entries formed */ 154379bdfe76SSatish Balay ierr = StashBuild_Private(&b->stash); CHKERRQ(ierr); 154490f02eecSBarry Smith b->donotstash = 0; 154579bdfe76SSatish Balay b->colmap = 0; 154679bdfe76SSatish Balay b->garray = 0; 154779bdfe76SSatish Balay b->roworiented = 1; 154879bdfe76SSatish Balay 154979bdfe76SSatish Balay /* stuff used for matrix vector multiply */ 155079bdfe76SSatish Balay b->lvec = 0; 155179bdfe76SSatish Balay b->Mvctx = 0; 155279bdfe76SSatish Balay 155379bdfe76SSatish Balay /* stuff for MatGetRow() */ 155479bdfe76SSatish Balay b->rowindices = 0; 155579bdfe76SSatish Balay b->rowvalues = 0; 155679bdfe76SSatish Balay b->getrowactive = PETSC_FALSE; 155779bdfe76SSatish Balay 155879bdfe76SSatish Balay *A = B; 155979bdfe76SSatish Balay return 0; 156079bdfe76SSatish Balay } 1561026e39d0SSatish Balay 15625615d1e5SSatish Balay #undef __FUNC__ 15635615d1e5SSatish Balay #define __FUNC__ "MatConvertSameType_MPIBAIJ" 15640ac07820SSatish Balay static int MatConvertSameType_MPIBAIJ(Mat matin,Mat *newmat,int cpvalues) 15650ac07820SSatish Balay { 15660ac07820SSatish Balay Mat mat; 15670ac07820SSatish Balay Mat_MPIBAIJ *a,*oldmat = (Mat_MPIBAIJ *) matin->data; 15680ac07820SSatish Balay int ierr, len=0, flg; 15690ac07820SSatish Balay 15700ac07820SSatish Balay *newmat = 0; 15710ac07820SSatish Balay PetscHeaderCreate(mat,_Mat,MAT_COOKIE,MATMPIBAIJ,matin->comm); 15720ac07820SSatish Balay PLogObjectCreate(mat); 15730ac07820SSatish Balay mat->data = (void *) (a = PetscNew(Mat_MPIBAIJ)); CHKPTRQ(a); 15740ac07820SSatish Balay PetscMemcpy(&mat->ops,&MatOps,sizeof(struct _MatOps)); 15750ac07820SSatish Balay mat->destroy = MatDestroy_MPIBAIJ; 15760ac07820SSatish Balay mat->view = MatView_MPIBAIJ; 15770ac07820SSatish Balay mat->factor = matin->factor; 15780ac07820SSatish Balay mat->assembled = PETSC_TRUE; 15790ac07820SSatish Balay 15800ac07820SSatish Balay a->m = mat->m = oldmat->m; 15810ac07820SSatish Balay a->n = mat->n = oldmat->n; 15820ac07820SSatish Balay a->M = mat->M = oldmat->M; 15830ac07820SSatish Balay a->N = mat->N = oldmat->N; 15840ac07820SSatish Balay 15850ac07820SSatish Balay a->bs = oldmat->bs; 15860ac07820SSatish Balay a->bs2 = oldmat->bs2; 15870ac07820SSatish Balay a->mbs = oldmat->mbs; 15880ac07820SSatish Balay a->nbs = oldmat->nbs; 15890ac07820SSatish Balay a->Mbs = oldmat->Mbs; 15900ac07820SSatish Balay a->Nbs = oldmat->Nbs; 15910ac07820SSatish Balay 15920ac07820SSatish Balay a->rstart = oldmat->rstart; 15930ac07820SSatish Balay a->rend = oldmat->rend; 15940ac07820SSatish Balay a->cstart = oldmat->cstart; 15950ac07820SSatish Balay a->cend = oldmat->cend; 15960ac07820SSatish Balay a->size = oldmat->size; 15970ac07820SSatish Balay a->rank = oldmat->rank; 15980ac07820SSatish Balay a->insertmode = NOT_SET_VALUES; 15990ac07820SSatish Balay a->rowvalues = 0; 16000ac07820SSatish Balay a->getrowactive = PETSC_FALSE; 16010ac07820SSatish Balay 16020ac07820SSatish Balay a->rowners = (int *) PetscMalloc(2*(a->size+2)*sizeof(int)); CHKPTRQ(a->rowners); 16030ac07820SSatish Balay PLogObjectMemory(mat,2*(a->size+2)*sizeof(int)+sizeof(struct _Mat)+sizeof(Mat_MPIBAIJ)); 16040ac07820SSatish Balay a->cowners = a->rowners + a->size + 2; 16050ac07820SSatish Balay PetscMemcpy(a->rowners,oldmat->rowners,2*(a->size+2)*sizeof(int)); 16060ac07820SSatish Balay ierr = StashInitialize_Private(&a->stash); CHKERRQ(ierr); 16070ac07820SSatish Balay if (oldmat->colmap) { 16080ac07820SSatish Balay a->colmap = (int *) PetscMalloc((a->Nbs)*sizeof(int));CHKPTRQ(a->colmap); 16090ac07820SSatish Balay PLogObjectMemory(mat,(a->Nbs)*sizeof(int)); 16100ac07820SSatish Balay PetscMemcpy(a->colmap,oldmat->colmap,(a->Nbs)*sizeof(int)); 16110ac07820SSatish Balay } else a->colmap = 0; 16120ac07820SSatish Balay if (oldmat->garray && (len = ((Mat_SeqBAIJ *) (oldmat->B->data))->nbs)) { 16130ac07820SSatish Balay a->garray = (int *) PetscMalloc(len*sizeof(int)); CHKPTRQ(a->garray); 16140ac07820SSatish Balay PLogObjectMemory(mat,len*sizeof(int)); 16150ac07820SSatish Balay PetscMemcpy(a->garray,oldmat->garray,len*sizeof(int)); 16160ac07820SSatish Balay } else a->garray = 0; 16170ac07820SSatish Balay 16180ac07820SSatish Balay ierr = VecDuplicate(oldmat->lvec,&a->lvec); CHKERRQ(ierr); 16190ac07820SSatish Balay PLogObjectParent(mat,a->lvec); 16200ac07820SSatish Balay ierr = VecScatterCopy(oldmat->Mvctx,&a->Mvctx); CHKERRQ(ierr); 16210ac07820SSatish Balay PLogObjectParent(mat,a->Mvctx); 16220ac07820SSatish Balay ierr = MatConvert(oldmat->A,MATSAME,&a->A); CHKERRQ(ierr); 16230ac07820SSatish Balay PLogObjectParent(mat,a->A); 16240ac07820SSatish Balay ierr = MatConvert(oldmat->B,MATSAME,&a->B); CHKERRQ(ierr); 16250ac07820SSatish Balay PLogObjectParent(mat,a->B); 16260ac07820SSatish Balay ierr = OptionsHasName(PETSC_NULL,"-help",&flg); CHKERRQ(ierr); 16270ac07820SSatish Balay if (flg) { 16280ac07820SSatish Balay ierr = MatPrintHelp(mat); CHKERRQ(ierr); 16290ac07820SSatish Balay } 16300ac07820SSatish Balay *newmat = mat; 16310ac07820SSatish Balay return 0; 16320ac07820SSatish Balay } 163357b952d6SSatish Balay 163457b952d6SSatish Balay #include "sys.h" 163557b952d6SSatish Balay 16365615d1e5SSatish Balay #undef __FUNC__ 16375615d1e5SSatish Balay #define __FUNC__ "MatLoad_MPIBAIJ" 163857b952d6SSatish Balay int MatLoad_MPIBAIJ(Viewer viewer,MatType type,Mat *newmat) 163957b952d6SSatish Balay { 164057b952d6SSatish Balay Mat A; 164157b952d6SSatish Balay int i, nz, ierr, j,rstart, rend, fd; 164257b952d6SSatish Balay Scalar *vals,*buf; 164357b952d6SSatish Balay MPI_Comm comm = ((PetscObject)viewer)->comm; 164457b952d6SSatish Balay MPI_Status status; 1645cee3aa6bSSatish Balay int header[4],rank,size,*rowlengths = 0,M,N,m,*rowners,*browners,maxnz,*cols; 164657b952d6SSatish Balay int *locrowlens,*sndcounts = 0,*procsnz = 0, jj,*mycols,*ibuf; 164757b952d6SSatish Balay int flg,tag = ((PetscObject)viewer)->tag,bs=1,bs2,Mbs,mbs,extra_rows; 164857b952d6SSatish Balay int *dlens,*odlens,*mask,*masked1,*masked2,rowcount,odcount; 164957b952d6SSatish Balay int dcount,kmax,k,nzcount,tmp; 165057b952d6SSatish Balay 165157b952d6SSatish Balay 165257b952d6SSatish Balay ierr = OptionsGetInt(PETSC_NULL,"-matload_block_size",&bs,&flg);CHKERRQ(ierr); 165357b952d6SSatish Balay bs2 = bs*bs; 165457b952d6SSatish Balay 165557b952d6SSatish Balay MPI_Comm_size(comm,&size); MPI_Comm_rank(comm,&rank); 165657b952d6SSatish Balay if (!rank) { 165757b952d6SSatish Balay ierr = ViewerBinaryGetDescriptor(viewer,&fd); CHKERRQ(ierr); 165857b952d6SSatish Balay ierr = PetscBinaryRead(fd,(char *)header,4,BINARY_INT); CHKERRQ(ierr); 1659e3372554SBarry Smith if (header[0] != MAT_COOKIE) SETERRQ(1,0,"not matrix object"); 166057b952d6SSatish Balay } 166157b952d6SSatish Balay 166257b952d6SSatish Balay MPI_Bcast(header+1,3,MPI_INT,0,comm); 166357b952d6SSatish Balay M = header[1]; N = header[2]; 166457b952d6SSatish Balay 1665e3372554SBarry Smith if (M != N) SETERRQ(1,0,"Can only do square matrices"); 166657b952d6SSatish Balay 166757b952d6SSatish Balay /* 166857b952d6SSatish Balay This code adds extra rows to make sure the number of rows is 166957b952d6SSatish Balay divisible by the blocksize 167057b952d6SSatish Balay */ 167157b952d6SSatish Balay Mbs = M/bs; 167257b952d6SSatish Balay extra_rows = bs - M + bs*(Mbs); 167357b952d6SSatish Balay if (extra_rows == bs) extra_rows = 0; 167457b952d6SSatish Balay else Mbs++; 167557b952d6SSatish Balay if (extra_rows &&!rank) { 1676b0267e0aSLois Curfman McInnes PLogInfo(0,"MatLoad_MPIBAIJ:Padding loaded matrix to match blocksize\n"); 167757b952d6SSatish Balay } 1678537820f0SBarry Smith 167957b952d6SSatish Balay /* determine ownership of all rows */ 168057b952d6SSatish Balay mbs = Mbs/size + ((Mbs % size) > rank); 168157b952d6SSatish Balay m = mbs * bs; 1682cee3aa6bSSatish Balay rowners = (int *) PetscMalloc(2*(size+2)*sizeof(int)); CHKPTRQ(rowners); 1683cee3aa6bSSatish Balay browners = rowners + size + 1; 168457b952d6SSatish Balay MPI_Allgather(&mbs,1,MPI_INT,rowners+1,1,MPI_INT,comm); 168557b952d6SSatish Balay rowners[0] = 0; 1686cee3aa6bSSatish Balay for ( i=2; i<=size; i++ ) rowners[i] += rowners[i-1]; 1687cee3aa6bSSatish Balay for ( i=0; i<=size; i++ ) browners[i] = rowners[i]*bs; 168857b952d6SSatish Balay rstart = rowners[rank]; 168957b952d6SSatish Balay rend = rowners[rank+1]; 169057b952d6SSatish Balay 169157b952d6SSatish Balay /* distribute row lengths to all processors */ 169257b952d6SSatish Balay locrowlens = (int*) PetscMalloc( (rend-rstart)*bs*sizeof(int) ); CHKPTRQ(locrowlens); 169357b952d6SSatish Balay if (!rank) { 169457b952d6SSatish Balay rowlengths = (int*) PetscMalloc( (M+extra_rows)*sizeof(int) ); CHKPTRQ(rowlengths); 169557b952d6SSatish Balay ierr = PetscBinaryRead(fd,rowlengths,M,BINARY_INT); CHKERRQ(ierr); 169657b952d6SSatish Balay for ( i=0; i<extra_rows; i++ ) rowlengths[M+i] = 1; 169757b952d6SSatish Balay sndcounts = (int*) PetscMalloc( size*sizeof(int) ); CHKPTRQ(sndcounts); 1698cee3aa6bSSatish Balay for ( i=0; i<size; i++ ) sndcounts[i] = browners[i+1] - browners[i]; 1699cee3aa6bSSatish Balay MPI_Scatterv(rowlengths,sndcounts,browners,MPI_INT,locrowlens,(rend-rstart)*bs,MPI_INT,0,comm); 170057b952d6SSatish Balay PetscFree(sndcounts); 170157b952d6SSatish Balay } 170257b952d6SSatish Balay else { 170357b952d6SSatish Balay MPI_Scatterv(0,0,0,MPI_INT,locrowlens,(rend-rstart)*bs,MPI_INT, 0,comm); 170457b952d6SSatish Balay } 170557b952d6SSatish Balay 170657b952d6SSatish Balay if (!rank) { 170757b952d6SSatish Balay /* calculate the number of nonzeros on each processor */ 170857b952d6SSatish Balay procsnz = (int*) PetscMalloc( size*sizeof(int) ); CHKPTRQ(procsnz); 170957b952d6SSatish Balay PetscMemzero(procsnz,size*sizeof(int)); 171057b952d6SSatish Balay for ( i=0; i<size; i++ ) { 171157b952d6SSatish Balay for ( j=rowners[i]*bs; j< rowners[i+1]*bs; j++ ) { 171257b952d6SSatish Balay procsnz[i] += rowlengths[j]; 171357b952d6SSatish Balay } 171457b952d6SSatish Balay } 171557b952d6SSatish Balay PetscFree(rowlengths); 171657b952d6SSatish Balay 171757b952d6SSatish Balay /* determine max buffer needed and allocate it */ 171857b952d6SSatish Balay maxnz = 0; 171957b952d6SSatish Balay for ( i=0; i<size; i++ ) { 172057b952d6SSatish Balay maxnz = PetscMax(maxnz,procsnz[i]); 172157b952d6SSatish Balay } 172257b952d6SSatish Balay cols = (int *) PetscMalloc( maxnz*sizeof(int) ); CHKPTRQ(cols); 172357b952d6SSatish Balay 172457b952d6SSatish Balay /* read in my part of the matrix column indices */ 172557b952d6SSatish Balay nz = procsnz[0]; 172657b952d6SSatish Balay ibuf = (int *) PetscMalloc( nz*sizeof(int) ); CHKPTRQ(ibuf); 172757b952d6SSatish Balay mycols = ibuf; 1728cee3aa6bSSatish Balay if (size == 1) nz -= extra_rows; 172957b952d6SSatish Balay ierr = PetscBinaryRead(fd,mycols,nz,BINARY_INT); CHKERRQ(ierr); 1730cee3aa6bSSatish Balay if (size == 1) for (i=0; i< extra_rows; i++) { mycols[nz+i] = M+i; } 1731cee3aa6bSSatish Balay 173257b952d6SSatish Balay /* read in every ones (except the last) and ship off */ 173357b952d6SSatish Balay for ( i=1; i<size-1; i++ ) { 173457b952d6SSatish Balay nz = procsnz[i]; 173557b952d6SSatish Balay ierr = PetscBinaryRead(fd,cols,nz,BINARY_INT); CHKERRQ(ierr); 173657b952d6SSatish Balay MPI_Send(cols,nz,MPI_INT,i,tag,comm); 173757b952d6SSatish Balay } 173857b952d6SSatish Balay /* read in the stuff for the last proc */ 173957b952d6SSatish Balay if ( size != 1 ) { 174057b952d6SSatish Balay nz = procsnz[size-1] - extra_rows; /* the extra rows are not on the disk */ 174157b952d6SSatish Balay ierr = PetscBinaryRead(fd,cols,nz,BINARY_INT); CHKERRQ(ierr); 174257b952d6SSatish Balay for ( i=0; i<extra_rows; i++ ) cols[nz+i] = M+i; 1743cee3aa6bSSatish Balay MPI_Send(cols,nz+extra_rows,MPI_INT,size-1,tag,comm); 174457b952d6SSatish Balay } 174557b952d6SSatish Balay PetscFree(cols); 174657b952d6SSatish Balay } 174757b952d6SSatish Balay else { 174857b952d6SSatish Balay /* determine buffer space needed for message */ 174957b952d6SSatish Balay nz = 0; 175057b952d6SSatish Balay for ( i=0; i<m; i++ ) { 175157b952d6SSatish Balay nz += locrowlens[i]; 175257b952d6SSatish Balay } 175357b952d6SSatish Balay ibuf = (int*) PetscMalloc( nz*sizeof(int) ); CHKPTRQ(ibuf); 175457b952d6SSatish Balay mycols = ibuf; 175557b952d6SSatish Balay /* receive message of column indices*/ 175657b952d6SSatish Balay MPI_Recv(mycols,nz,MPI_INT,0,tag,comm,&status); 175757b952d6SSatish Balay MPI_Get_count(&status,MPI_INT,&maxnz); 1758e3372554SBarry Smith if (maxnz != nz) SETERRQ(1,0,"something is wrong with file"); 175957b952d6SSatish Balay } 176057b952d6SSatish Balay 176157b952d6SSatish Balay /* loop over local rows, determining number of off diagonal entries */ 1762cee3aa6bSSatish Balay dlens = (int *) PetscMalloc( 2*(rend-rstart+1)*sizeof(int) ); CHKPTRQ(dlens); 1763cee3aa6bSSatish Balay odlens = dlens + (rend-rstart); 176457b952d6SSatish Balay mask = (int *) PetscMalloc( 3*Mbs*sizeof(int) ); CHKPTRQ(mask); 1765cee3aa6bSSatish Balay PetscMemzero(mask,3*Mbs*sizeof(int)); 176657b952d6SSatish Balay masked1 = mask + Mbs; 176757b952d6SSatish Balay masked2 = masked1 + Mbs; 176857b952d6SSatish Balay rowcount = 0; nzcount = 0; 176957b952d6SSatish Balay for ( i=0; i<mbs; i++ ) { 177057b952d6SSatish Balay dcount = 0; 177157b952d6SSatish Balay odcount = 0; 177257b952d6SSatish Balay for ( j=0; j<bs; j++ ) { 177357b952d6SSatish Balay kmax = locrowlens[rowcount]; 177457b952d6SSatish Balay for ( k=0; k<kmax; k++ ) { 177557b952d6SSatish Balay tmp = mycols[nzcount++]/bs; 177657b952d6SSatish Balay if (!mask[tmp]) { 177757b952d6SSatish Balay mask[tmp] = 1; 177857b952d6SSatish Balay if (tmp < rstart || tmp >= rend ) masked2[odcount++] = tmp; 177957b952d6SSatish Balay else masked1[dcount++] = tmp; 178057b952d6SSatish Balay } 178157b952d6SSatish Balay } 178257b952d6SSatish Balay rowcount++; 178357b952d6SSatish Balay } 1784cee3aa6bSSatish Balay 178557b952d6SSatish Balay dlens[i] = dcount; 178657b952d6SSatish Balay odlens[i] = odcount; 1787cee3aa6bSSatish Balay 178857b952d6SSatish Balay /* zero out the mask elements we set */ 178957b952d6SSatish Balay for ( j=0; j<dcount; j++ ) mask[masked1[j]] = 0; 179057b952d6SSatish Balay for ( j=0; j<odcount; j++ ) mask[masked2[j]] = 0; 179157b952d6SSatish Balay } 1792cee3aa6bSSatish Balay 179357b952d6SSatish Balay /* create our matrix */ 1794537820f0SBarry Smith ierr = MatCreateMPIBAIJ(comm,bs,m,PETSC_DECIDE,M+extra_rows,N+extra_rows,0,dlens,0,odlens,newmat); 1795537820f0SBarry Smith CHKERRQ(ierr); 179657b952d6SSatish Balay A = *newmat; 17976d4a8577SBarry Smith MatSetOption(A,MAT_COLUMNS_SORTED); 179857b952d6SSatish Balay 179957b952d6SSatish Balay if (!rank) { 180057b952d6SSatish Balay buf = (Scalar *) PetscMalloc( maxnz*sizeof(Scalar) ); CHKPTRQ(buf); 180157b952d6SSatish Balay /* read in my part of the matrix numerical values */ 180257b952d6SSatish Balay nz = procsnz[0]; 180357b952d6SSatish Balay vals = buf; 1804cee3aa6bSSatish Balay mycols = ibuf; 1805cee3aa6bSSatish Balay if (size == 1) nz -= extra_rows; 180657b952d6SSatish Balay ierr = PetscBinaryRead(fd,vals,nz,BINARY_SCALAR); CHKERRQ(ierr); 1807cee3aa6bSSatish Balay if (size == 1) for (i=0; i< extra_rows; i++) { vals[nz+i] = 1.0; } 1808537820f0SBarry Smith 180957b952d6SSatish Balay /* insert into matrix */ 181057b952d6SSatish Balay jj = rstart*bs; 181157b952d6SSatish Balay for ( i=0; i<m; i++ ) { 181257b952d6SSatish Balay ierr = MatSetValues(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr); 181357b952d6SSatish Balay mycols += locrowlens[i]; 181457b952d6SSatish Balay vals += locrowlens[i]; 181557b952d6SSatish Balay jj++; 181657b952d6SSatish Balay } 181757b952d6SSatish Balay /* read in other processors (except the last one) and ship out */ 181857b952d6SSatish Balay for ( i=1; i<size-1; i++ ) { 181957b952d6SSatish Balay nz = procsnz[i]; 182057b952d6SSatish Balay vals = buf; 182157b952d6SSatish Balay ierr = PetscBinaryRead(fd,vals,nz,BINARY_SCALAR); CHKERRQ(ierr); 182257b952d6SSatish Balay MPI_Send(vals,nz,MPIU_SCALAR,i,A->tag,comm); 182357b952d6SSatish Balay } 182457b952d6SSatish Balay /* the last proc */ 182557b952d6SSatish Balay if ( size != 1 ){ 182657b952d6SSatish Balay nz = procsnz[i] - extra_rows; 1827cee3aa6bSSatish Balay vals = buf; 182857b952d6SSatish Balay ierr = PetscBinaryRead(fd,vals,nz,BINARY_SCALAR); CHKERRQ(ierr); 182957b952d6SSatish Balay for ( i=0; i<extra_rows; i++ ) vals[nz+i] = 1.0; 1830cee3aa6bSSatish Balay MPI_Send(vals,nz+extra_rows,MPIU_SCALAR,size-1,A->tag,comm); 183157b952d6SSatish Balay } 183257b952d6SSatish Balay PetscFree(procsnz); 183357b952d6SSatish Balay } 183457b952d6SSatish Balay else { 183557b952d6SSatish Balay /* receive numeric values */ 183657b952d6SSatish Balay buf = (Scalar*) PetscMalloc( nz*sizeof(Scalar) ); CHKPTRQ(buf); 183757b952d6SSatish Balay 183857b952d6SSatish Balay /* receive message of values*/ 183957b952d6SSatish Balay vals = buf; 1840cee3aa6bSSatish Balay mycols = ibuf; 184157b952d6SSatish Balay MPI_Recv(vals,nz,MPIU_SCALAR,0,A->tag,comm,&status); 184257b952d6SSatish Balay MPI_Get_count(&status,MPIU_SCALAR,&maxnz); 1843e3372554SBarry Smith if (maxnz != nz) SETERRQ(1,0,"something is wrong with file"); 184457b952d6SSatish Balay 184557b952d6SSatish Balay /* insert into matrix */ 184657b952d6SSatish Balay jj = rstart*bs; 1847cee3aa6bSSatish Balay for ( i=0; i<m; i++ ) { 184857b952d6SSatish Balay ierr = MatSetValues(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr); 184957b952d6SSatish Balay mycols += locrowlens[i]; 185057b952d6SSatish Balay vals += locrowlens[i]; 185157b952d6SSatish Balay jj++; 185257b952d6SSatish Balay } 185357b952d6SSatish Balay } 185457b952d6SSatish Balay PetscFree(locrowlens); 185557b952d6SSatish Balay PetscFree(buf); 185657b952d6SSatish Balay PetscFree(ibuf); 185757b952d6SSatish Balay PetscFree(rowners); 185857b952d6SSatish Balay PetscFree(dlens); 1859cee3aa6bSSatish Balay PetscFree(mask); 18606d4a8577SBarry Smith ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY); CHKERRQ(ierr); 18616d4a8577SBarry Smith ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY); CHKERRQ(ierr); 186257b952d6SSatish Balay return 0; 186357b952d6SSatish Balay } 186457b952d6SSatish Balay 186557b952d6SSatish Balay 1866