xref: /petsc/src/mat/impls/baij/mpi/mpibaij.c (revision ade3a6722cc8c10519324413db03edb622122d54)
179bdfe76SSatish Balay 
2c6db04a5SJed Brown #include <../src/mat/impls/baij/mpi/mpibaij.h>   /*I  "petscmat.h"  I*/
3c6db04a5SJed Brown #include <petscblaslapack.h>
465a92638SMatthew G. Knepley #include <petscsf.h>
579bdfe76SSatish Balay 
609573ac7SBarry Smith extern PetscErrorCode MatSetUpMultiply_MPIBAIJ(Mat);
7ab9863d7SBarry Smith extern PetscErrorCode MatDisAssemble_MPIBAIJ(Mat);
809573ac7SBarry Smith extern PetscErrorCode MatGetValues_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt [],PetscScalar []);
909573ac7SBarry Smith extern PetscErrorCode MatSetValues_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt [],const PetscScalar [],InsertMode);
1009573ac7SBarry Smith extern PetscErrorCode MatSetValuesBlocked_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode);
1109573ac7SBarry Smith extern PetscErrorCode MatGetRow_SeqBAIJ(Mat,PetscInt,PetscInt*,PetscInt*[],PetscScalar*[]);
1209573ac7SBarry Smith extern PetscErrorCode MatRestoreRow_SeqBAIJ(Mat,PetscInt,PetscInt*,PetscInt*[],PetscScalar*[]);
1309573ac7SBarry Smith extern PetscErrorCode MatZeroRows_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscScalar,Vec,Vec);
1493fea6afSBarry Smith 
154a2ae208SSatish Balay #undef __FUNCT__
16985db425SBarry Smith #define __FUNCT__ "MatGetRowMaxAbs_MPIBAIJ"
17985db425SBarry Smith PetscErrorCode MatGetRowMaxAbs_MPIBAIJ(Mat A,Vec v,PetscInt idx[])
187843d17aSBarry Smith {
197843d17aSBarry Smith   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)A->data;
20dfbe8321SBarry Smith   PetscErrorCode ierr;
21985db425SBarry Smith   PetscInt       i,*idxb = 0;
2287828ca2SBarry Smith   PetscScalar    *va,*vb;
237843d17aSBarry Smith   Vec            vtmp;
247843d17aSBarry Smith 
257843d17aSBarry Smith   PetscFunctionBegin;
26985db425SBarry Smith   ierr = MatGetRowMaxAbs(a->A,v,idx);CHKERRQ(ierr);
271ebc52fbSHong Zhang   ierr = VecGetArray(v,&va);CHKERRQ(ierr);
28985db425SBarry Smith   if (idx) {
2926fbe8dcSKarl Rupp     for (i=0; i<A->rmap->n; i++) {
3026fbe8dcSKarl Rupp       if (PetscAbsScalar(va[i])) idx[i] += A->cmap->rstart;
3126fbe8dcSKarl Rupp     }
32985db425SBarry Smith   }
337843d17aSBarry Smith 
34d0f46423SBarry Smith   ierr = VecCreateSeq(PETSC_COMM_SELF,A->rmap->n,&vtmp);CHKERRQ(ierr);
35785e854fSJed Brown   if (idx) {ierr = PetscMalloc1(A->rmap->n,&idxb);CHKERRQ(ierr);}
36985db425SBarry Smith   ierr = MatGetRowMaxAbs(a->B,vtmp,idxb);CHKERRQ(ierr);
371ebc52fbSHong Zhang   ierr = VecGetArray(vtmp,&vb);CHKERRQ(ierr);
387843d17aSBarry Smith 
39d0f46423SBarry Smith   for (i=0; i<A->rmap->n; i++) {
4026fbe8dcSKarl Rupp     if (PetscAbsScalar(va[i]) < PetscAbsScalar(vb[i])) {
4126fbe8dcSKarl Rupp       va[i] = vb[i];
4226fbe8dcSKarl Rupp       if (idx) idx[i] = A->cmap->bs*a->garray[idxb[i]/A->cmap->bs] + (idxb[i] % A->cmap->bs);
4326fbe8dcSKarl Rupp     }
447843d17aSBarry Smith   }
457843d17aSBarry Smith 
461ebc52fbSHong Zhang   ierr = VecRestoreArray(v,&va);CHKERRQ(ierr);
471ebc52fbSHong Zhang   ierr = VecRestoreArray(vtmp,&vb);CHKERRQ(ierr);
48c31cb41cSBarry Smith   ierr = PetscFree(idxb);CHKERRQ(ierr);
496bf464f9SBarry Smith   ierr = VecDestroy(&vtmp);CHKERRQ(ierr);
507843d17aSBarry Smith   PetscFunctionReturn(0);
517843d17aSBarry Smith }
527843d17aSBarry Smith 
534a2ae208SSatish Balay #undef __FUNCT__
544a2ae208SSatish Balay #define __FUNCT__ "MatStoreValues_MPIBAIJ"
557087cfbeSBarry Smith PetscErrorCode  MatStoreValues_MPIBAIJ(Mat mat)
567fc3c18eSBarry Smith {
577fc3c18eSBarry Smith   Mat_MPIBAIJ    *aij = (Mat_MPIBAIJ*)mat->data;
58dfbe8321SBarry Smith   PetscErrorCode ierr;
597fc3c18eSBarry Smith 
607fc3c18eSBarry Smith   PetscFunctionBegin;
617fc3c18eSBarry Smith   ierr = MatStoreValues(aij->A);CHKERRQ(ierr);
627fc3c18eSBarry Smith   ierr = MatStoreValues(aij->B);CHKERRQ(ierr);
637fc3c18eSBarry Smith   PetscFunctionReturn(0);
647fc3c18eSBarry Smith }
657fc3c18eSBarry Smith 
664a2ae208SSatish Balay #undef __FUNCT__
674a2ae208SSatish Balay #define __FUNCT__ "MatRetrieveValues_MPIBAIJ"
687087cfbeSBarry Smith PetscErrorCode  MatRetrieveValues_MPIBAIJ(Mat mat)
697fc3c18eSBarry Smith {
707fc3c18eSBarry Smith   Mat_MPIBAIJ    *aij = (Mat_MPIBAIJ*)mat->data;
71dfbe8321SBarry Smith   PetscErrorCode ierr;
727fc3c18eSBarry Smith 
737fc3c18eSBarry Smith   PetscFunctionBegin;
747fc3c18eSBarry Smith   ierr = MatRetrieveValues(aij->A);CHKERRQ(ierr);
757fc3c18eSBarry Smith   ierr = MatRetrieveValues(aij->B);CHKERRQ(ierr);
767fc3c18eSBarry Smith   PetscFunctionReturn(0);
777fc3c18eSBarry Smith }
787fc3c18eSBarry Smith 
79537820f0SBarry Smith /*
80537820f0SBarry Smith      Local utility routine that creates a mapping from the global column
8157b952d6SSatish Balay    number to the local number in the off-diagonal part of the local
82e06f6af7SJed Brown    storage of the matrix.  This is done in a non scalable way since the
8357b952d6SSatish Balay    length of colmap equals the global matrix length.
8457b952d6SSatish Balay */
854a2ae208SSatish Balay #undef __FUNCT__
86ab9863d7SBarry Smith #define __FUNCT__ "MatCreateColmap_MPIBAIJ_Private"
87ab9863d7SBarry Smith PetscErrorCode MatCreateColmap_MPIBAIJ_Private(Mat mat)
8857b952d6SSatish Balay {
8957b952d6SSatish Balay   Mat_MPIBAIJ    *baij = (Mat_MPIBAIJ*)mat->data;
9057b952d6SSatish Balay   Mat_SeqBAIJ    *B    = (Mat_SeqBAIJ*)baij->B->data;
916849ba73SBarry Smith   PetscErrorCode ierr;
92d0f46423SBarry Smith   PetscInt       nbs = B->nbs,i,bs=mat->rmap->bs;
9357b952d6SSatish Balay 
94d64ed03dSBarry Smith   PetscFunctionBegin;
95aa482453SBarry Smith #if defined(PETSC_USE_CTABLE)
96e23dfa41SBarry Smith   ierr = PetscTableCreate(baij->nbs,baij->Nbs+1,&baij->colmap);CHKERRQ(ierr);
9748e59246SSatish Balay   for (i=0; i<nbs; i++) {
983861aac3SJed Brown     ierr = PetscTableAdd(baij->colmap,baij->garray[i]+1,i*bs+1,INSERT_VALUES);CHKERRQ(ierr);
9948e59246SSatish Balay   }
10048e59246SSatish Balay #else
101785e854fSJed Brown   ierr = PetscMalloc1((baij->Nbs+1),&baij->colmap);CHKERRQ(ierr);
1023bb1ff40SBarry Smith   ierr = PetscLogObjectMemory((PetscObject)mat,baij->Nbs*sizeof(PetscInt));CHKERRQ(ierr);
103b24ad042SBarry Smith   ierr = PetscMemzero(baij->colmap,baij->Nbs*sizeof(PetscInt));CHKERRQ(ierr);
104928fc39bSSatish Balay   for (i=0; i<nbs; i++) baij->colmap[baij->garray[i]] = i*bs+1;
10548e59246SSatish Balay #endif
1063a40ed3dSBarry Smith   PetscFunctionReturn(0);
10757b952d6SSatish Balay }
10857b952d6SSatish Balay 
109f5e9677aSSatish Balay #define  MatSetValues_SeqBAIJ_A_Private(row,col,value,addv) \
11080c1aa95SSatish Balay   { \
11180c1aa95SSatish Balay  \
11280c1aa95SSatish Balay     brow = row/bs;  \
11380c1aa95SSatish Balay     rp   = aj + ai[brow]; ap = aa + bs2*ai[brow]; \
114ac7a638eSSatish Balay     rmax = aimax[brow]; nrow = ailen[brow]; \
11580c1aa95SSatish Balay     bcol = col/bs; \
11680c1aa95SSatish Balay     ridx = row % bs; cidx = col % bs; \
117ab26458aSBarry Smith     low  = 0; high = nrow; \
118ab26458aSBarry Smith     while (high-low > 3) { \
119ab26458aSBarry Smith       t = (low+high)/2; \
120ab26458aSBarry Smith       if (rp[t] > bcol) high = t; \
121ab26458aSBarry Smith       else              low  = t; \
122ab26458aSBarry Smith     } \
123ab26458aSBarry Smith     for (_i=low; _i<high; _i++) { \
12480c1aa95SSatish Balay       if (rp[_i] > bcol) break; \
12580c1aa95SSatish Balay       if (rp[_i] == bcol) { \
12680c1aa95SSatish Balay         bap = ap +  bs2*_i + bs*cidx + ridx; \
127eada6651SSatish Balay         if (addv == ADD_VALUES) *bap += value;  \
128eada6651SSatish Balay         else                    *bap  = value;  \
129ac7a638eSSatish Balay         goto a_noinsert; \
13080c1aa95SSatish Balay       } \
13180c1aa95SSatish Balay     } \
13289280ab3SLois Curfman McInnes     if (a->nonew == 1) goto a_noinsert; \
133e32f2f54SBarry Smith     if (a->nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \
134fef13f97SBarry Smith     MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,brow,bcol,rmax,aa,ai,aj,rp,ap,aimax,a->nonew,MatScalar); \
13580c1aa95SSatish Balay     N = nrow++ - 1;  \
13680c1aa95SSatish Balay     /* shift up all the later entries in this row */ \
13780c1aa95SSatish Balay     for (ii=N; ii>=_i; ii--) { \
13880c1aa95SSatish Balay       rp[ii+1] = rp[ii]; \
1393eda8832SBarry Smith       ierr     = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \
14080c1aa95SSatish Balay     } \
1413eda8832SBarry Smith     if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr); }  \
14280c1aa95SSatish Balay     rp[_i]                      = bcol;  \
14380c1aa95SSatish Balay     ap[bs2*_i + bs*cidx + ridx] = value;  \
144ac7a638eSSatish Balay a_noinsert:; \
14580c1aa95SSatish Balay     ailen[brow] = nrow; \
14680c1aa95SSatish Balay   }
14757b952d6SSatish Balay 
148ac7a638eSSatish Balay #define  MatSetValues_SeqBAIJ_B_Private(row,col,value,addv) \
149ac7a638eSSatish Balay   { \
150ac7a638eSSatish Balay     brow = row/bs;  \
151ac7a638eSSatish Balay     rp   = bj + bi[brow]; ap = ba + bs2*bi[brow]; \
152ac7a638eSSatish Balay     rmax = bimax[brow]; nrow = bilen[brow]; \
153ac7a638eSSatish Balay     bcol = col/bs; \
154ac7a638eSSatish Balay     ridx = row % bs; cidx = col % bs; \
155ac7a638eSSatish Balay     low  = 0; high = nrow; \
156ac7a638eSSatish Balay     while (high-low > 3) { \
157ac7a638eSSatish Balay       t = (low+high)/2; \
158ac7a638eSSatish Balay       if (rp[t] > bcol) high = t; \
159ac7a638eSSatish Balay       else              low  = t; \
160ac7a638eSSatish Balay     } \
161ac7a638eSSatish Balay     for (_i=low; _i<high; _i++) { \
162ac7a638eSSatish Balay       if (rp[_i] > bcol) break; \
163ac7a638eSSatish Balay       if (rp[_i] == bcol) { \
164ac7a638eSSatish Balay         bap = ap +  bs2*_i + bs*cidx + ridx; \
165ac7a638eSSatish Balay         if (addv == ADD_VALUES) *bap += value;  \
166ac7a638eSSatish Balay         else                    *bap  = value;  \
167ac7a638eSSatish Balay         goto b_noinsert; \
168ac7a638eSSatish Balay       } \
169ac7a638eSSatish Balay     } \
17089280ab3SLois Curfman McInnes     if (b->nonew == 1) goto b_noinsert; \
171e32f2f54SBarry Smith     if (b->nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \
172fef13f97SBarry Smith     MatSeqXAIJReallocateAIJ(B,b->mbs,bs2,nrow,brow,bcol,rmax,ba,bi,bj,rp,ap,bimax,b->nonew,MatScalar); \
173ac7a638eSSatish Balay     N = nrow++ - 1;  \
174ac7a638eSSatish Balay     /* shift up all the later entries in this row */ \
175ac7a638eSSatish Balay     for (ii=N; ii>=_i; ii--) { \
176ac7a638eSSatish Balay       rp[ii+1] = rp[ii]; \
1773eda8832SBarry Smith       ierr     = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \
178ac7a638eSSatish Balay     } \
1793eda8832SBarry Smith     if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr);}  \
180ac7a638eSSatish Balay     rp[_i]                      = bcol;  \
181ac7a638eSSatish Balay     ap[bs2*_i + bs*cidx + ridx] = value;  \
182ac7a638eSSatish Balay b_noinsert:; \
183ac7a638eSSatish Balay     bilen[brow] = nrow; \
184ac7a638eSSatish Balay   }
185ac7a638eSSatish Balay 
1864a2ae208SSatish Balay #undef __FUNCT__
1874a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_MPIBAIJ"
188b24ad042SBarry Smith PetscErrorCode MatSetValues_MPIBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv)
18957b952d6SSatish Balay {
19057b952d6SSatish Balay   Mat_MPIBAIJ    *baij = (Mat_MPIBAIJ*)mat->data;
19193fea6afSBarry Smith   MatScalar      value;
192ace3abfcSBarry Smith   PetscBool      roworiented = baij->roworiented;
193dfbe8321SBarry Smith   PetscErrorCode ierr;
194b24ad042SBarry Smith   PetscInt       i,j,row,col;
195d0f46423SBarry Smith   PetscInt       rstart_orig=mat->rmap->rstart;
196d0f46423SBarry Smith   PetscInt       rend_orig  =mat->rmap->rend,cstart_orig=mat->cmap->rstart;
197d0f46423SBarry Smith   PetscInt       cend_orig  =mat->cmap->rend,bs=mat->rmap->bs;
19857b952d6SSatish Balay 
199eada6651SSatish Balay   /* Some Variables required in the macro */
20080c1aa95SSatish Balay   Mat         A     = baij->A;
20180c1aa95SSatish Balay   Mat_SeqBAIJ *a    = (Mat_SeqBAIJ*)(A)->data;
202b24ad042SBarry Smith   PetscInt    *aimax=a->imax,*ai=a->i,*ailen=a->ilen,*aj=a->j;
2033eda8832SBarry Smith   MatScalar   *aa   =a->a;
204ac7a638eSSatish Balay 
205ac7a638eSSatish Balay   Mat         B     = baij->B;
206ac7a638eSSatish Balay   Mat_SeqBAIJ *b    = (Mat_SeqBAIJ*)(B)->data;
207b24ad042SBarry Smith   PetscInt    *bimax=b->imax,*bi=b->i,*bilen=b->ilen,*bj=b->j;
2083eda8832SBarry Smith   MatScalar   *ba   =b->a;
209ac7a638eSSatish Balay 
210b24ad042SBarry Smith   PetscInt  *rp,ii,nrow,_i,rmax,N,brow,bcol;
211b24ad042SBarry Smith   PetscInt  low,high,t,ridx,cidx,bs2=a->bs2;
2123eda8832SBarry Smith   MatScalar *ap,*bap;
21380c1aa95SSatish Balay 
214d64ed03dSBarry Smith   PetscFunctionBegin;
21557b952d6SSatish Balay   for (i=0; i<m; i++) {
2165ef9f2a5SBarry Smith     if (im[i] < 0) continue;
2172515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
218e32f2f54SBarry Smith     if (im[i] >= mat->rmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],mat->rmap->N-1);
219639f9d9dSBarry Smith #endif
22057b952d6SSatish Balay     if (im[i] >= rstart_orig && im[i] < rend_orig) {
22157b952d6SSatish Balay       row = im[i] - rstart_orig;
22257b952d6SSatish Balay       for (j=0; j<n; j++) {
22357b952d6SSatish Balay         if (in[j] >= cstart_orig && in[j] < cend_orig) {
22457b952d6SSatish Balay           col = in[j] - cstart_orig;
225db4deed7SKarl Rupp           if (roworiented) value = v[i*n+j];
226db4deed7SKarl Rupp           else             value = v[i+j*m];
227f5e9677aSSatish Balay           MatSetValues_SeqBAIJ_A_Private(row,col,value,addv);
22880c1aa95SSatish Balay           /* ierr = MatSetValues_SeqBAIJ(baij->A,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */
22973959e64SBarry Smith         } else if (in[j] < 0) continue;
2302515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
231660746e0SBarry Smith         else if (in[j] >= mat->cmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",in[j],mat->cmap->N-1);
232639f9d9dSBarry Smith #endif
23357b952d6SSatish Balay         else {
23457b952d6SSatish Balay           if (mat->was_assembled) {
235905e6a2fSBarry Smith             if (!baij->colmap) {
236ab9863d7SBarry Smith               ierr = MatCreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
237905e6a2fSBarry Smith             }
238aa482453SBarry Smith #if defined(PETSC_USE_CTABLE)
2390f5bd95cSBarry Smith             ierr = PetscTableFind(baij->colmap,in[j]/bs + 1,&col);CHKERRQ(ierr);
240bba1ac68SSatish Balay             col  = col - 1;
24148e59246SSatish Balay #else
242bba1ac68SSatish Balay             col = baij->colmap[in[j]/bs] - 1;
24348e59246SSatish Balay #endif
244c9ef50b2SBarry Smith             if (col < 0 && !((Mat_SeqBAIJ*)(baij->B->data))->nonew) {
245ab9863d7SBarry Smith               ierr = MatDisAssemble_MPIBAIJ(mat);CHKERRQ(ierr);
2468295de27SSatish Balay               col  =  in[j];
2479bf004c3SSatish Balay               /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */
2489bf004c3SSatish Balay               B    = baij->B;
2499bf004c3SSatish Balay               b    = (Mat_SeqBAIJ*)(B)->data;
2509bf004c3SSatish Balay               bimax=b->imax;bi=b->i;bilen=b->ilen;bj=b->j;
2519bf004c3SSatish Balay               ba   =b->a;
252c9ef50b2SBarry Smith             } else if (col < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", im[i], in[j]);
253c9ef50b2SBarry Smith             else col += in[j]%bs;
2548295de27SSatish Balay           } else col = in[j];
255db4deed7SKarl Rupp           if (roworiented) value = v[i*n+j];
256db4deed7SKarl Rupp           else             value = v[i+j*m];
25790da58bdSSatish Balay           MatSetValues_SeqBAIJ_B_Private(row,col,value,addv);
25890da58bdSSatish Balay           /* ierr = MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */
25957b952d6SSatish Balay         }
26057b952d6SSatish Balay       }
261d64ed03dSBarry Smith     } else {
2624cb17eb5SBarry Smith       if (mat->nooffprocentries) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Setting off process row %D even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set",im[i]);
26390f02eecSBarry Smith       if (!baij->donotstash) {
2645080c13bSMatthew G Knepley         mat->assembled = PETSC_FALSE;
265ff2fd236SBarry Smith         if (roworiented) {
266b400d20cSBarry Smith           ierr = MatStashValuesRow_Private(&mat->stash,im[i],n,in,v+i*n,PETSC_FALSE);CHKERRQ(ierr);
267ff2fd236SBarry Smith         } else {
268b400d20cSBarry Smith           ierr = MatStashValuesCol_Private(&mat->stash,im[i],n,in,v+i,m,PETSC_FALSE);CHKERRQ(ierr);
26957b952d6SSatish Balay         }
27057b952d6SSatish Balay       }
27157b952d6SSatish Balay     }
27290f02eecSBarry Smith   }
2733a40ed3dSBarry Smith   PetscFunctionReturn(0);
27457b952d6SSatish Balay }
27557b952d6SSatish Balay 
2764a2ae208SSatish Balay #undef __FUNCT__
27797e5c40aSBarry Smith #define __FUNCT__ "MatSetValuesBlocked_MPIBAIJ"
27897e5c40aSBarry Smith PetscErrorCode MatSetValuesBlocked_MPIBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv)
279ab26458aSBarry Smith {
280ab26458aSBarry Smith   Mat_MPIBAIJ       *baij = (Mat_MPIBAIJ*)mat->data;
281dd6ea824SBarry Smith   const PetscScalar *value;
282f15d580aSBarry Smith   MatScalar         *barray     = baij->barray;
283ace3abfcSBarry Smith   PetscBool         roworiented = baij->roworiented;
284dfbe8321SBarry Smith   PetscErrorCode    ierr;
285899cda47SBarry Smith   PetscInt          i,j,ii,jj,row,col,rstart=baij->rstartbs;
286899cda47SBarry Smith   PetscInt          rend=baij->rendbs,cstart=baij->cstartbs,stepval;
287d0f46423SBarry Smith   PetscInt          cend=baij->cendbs,bs=mat->rmap->bs,bs2=baij->bs2;
288ab26458aSBarry Smith 
289b16ae2b1SBarry Smith   PetscFunctionBegin;
29030793edcSSatish Balay   if (!barray) {
291785e854fSJed Brown     ierr         = PetscMalloc1(bs2,&barray);CHKERRQ(ierr);
29282502324SSatish Balay     baij->barray = barray;
29330793edcSSatish Balay   }
29430793edcSSatish Balay 
29526fbe8dcSKarl Rupp   if (roworiented) stepval = (n-1)*bs;
29626fbe8dcSKarl Rupp   else stepval = (m-1)*bs;
29726fbe8dcSKarl Rupp 
298ab26458aSBarry Smith   for (i=0; i<m; i++) {
2995ef9f2a5SBarry Smith     if (im[i] < 0) continue;
3002515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
301e32f2f54SBarry Smith     if (im[i] >= baij->Mbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large, row %D max %D",im[i],baij->Mbs-1);
302ab26458aSBarry Smith #endif
303ab26458aSBarry Smith     if (im[i] >= rstart && im[i] < rend) {
304ab26458aSBarry Smith       row = im[i] - rstart;
305ab26458aSBarry Smith       for (j=0; j<n; j++) {
30615b57d14SSatish Balay         /* If NumCol = 1 then a copy is not required */
30715b57d14SSatish Balay         if ((roworiented) && (n == 1)) {
308f15d580aSBarry Smith           barray = (MatScalar*)v + i*bs2;
30915b57d14SSatish Balay         } else if ((!roworiented) && (m == 1)) {
310f15d580aSBarry Smith           barray = (MatScalar*)v + j*bs2;
31115b57d14SSatish Balay         } else { /* Here a copy is required */
312ab26458aSBarry Smith           if (roworiented) {
31353ef36baSBarry Smith             value = v + (i*(stepval+bs) + j)*bs;
314ab26458aSBarry Smith           } else {
31553ef36baSBarry Smith             value = v + (j*(stepval+bs) + i)*bs;
316abef11f7SSatish Balay           }
31753ef36baSBarry Smith           for (ii=0; ii<bs; ii++,value+=bs+stepval) {
31826fbe8dcSKarl Rupp             for (jj=0; jj<bs; jj++) barray[jj] = value[jj];
31953ef36baSBarry Smith             barray += bs;
32047513183SBarry Smith           }
32130793edcSSatish Balay           barray -= bs2;
32215b57d14SSatish Balay         }
323abef11f7SSatish Balay 
324abef11f7SSatish Balay         if (in[j] >= cstart && in[j] < cend) {
325abef11f7SSatish Balay           col  = in[j] - cstart;
32697e5c40aSBarry Smith           ierr = MatSetValuesBlocked_SeqBAIJ(baij->A,1,&row,1,&col,barray,addv);CHKERRQ(ierr);
32726fbe8dcSKarl Rupp         } else if (in[j] < 0) continue;
3282515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
329cb9801acSJed Brown         else if (in[j] >= baij->Nbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large, col %D max %D",in[j],baij->Nbs-1);
330ab26458aSBarry Smith #endif
331ab26458aSBarry Smith         else {
332ab26458aSBarry Smith           if (mat->was_assembled) {
333ab26458aSBarry Smith             if (!baij->colmap) {
334ab9863d7SBarry Smith               ierr = MatCreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
335ab26458aSBarry Smith             }
336a5eb4965SSatish Balay 
3372515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
338aa482453SBarry Smith #if defined(PETSC_USE_CTABLE)
339b24ad042SBarry Smith             { PetscInt data;
3400f5bd95cSBarry Smith               ierr = PetscTableFind(baij->colmap,in[j]+1,&data);CHKERRQ(ierr);
341e32f2f54SBarry Smith               if ((data - 1) % bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap");
342fa46199cSSatish Balay             }
34348e59246SSatish Balay #else
344e32f2f54SBarry Smith             if ((baij->colmap[in[j]] - 1) % bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap");
345a5eb4965SSatish Balay #endif
34648e59246SSatish Balay #endif
347aa482453SBarry Smith #if defined(PETSC_USE_CTABLE)
3480f5bd95cSBarry Smith             ierr = PetscTableFind(baij->colmap,in[j]+1,&col);CHKERRQ(ierr);
349fa46199cSSatish Balay             col  = (col - 1)/bs;
35048e59246SSatish Balay #else
351a5eb4965SSatish Balay             col = (baij->colmap[in[j]] - 1)/bs;
35248e59246SSatish Balay #endif
3530e9bae81SBarry Smith             if (col < 0 && !((Mat_SeqBAIJ*)(baij->B->data))->nonew) {
354ab9863d7SBarry Smith               ierr = MatDisAssemble_MPIBAIJ(mat);CHKERRQ(ierr);
355ab26458aSBarry Smith               col  =  in[j];
3560e9bae81SBarry Smith             } else if (col < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", bs*im[i], bs*in[j]);
357db4deed7SKarl Rupp           } else col = in[j];
35897e5c40aSBarry Smith           ierr = MatSetValuesBlocked_SeqBAIJ(baij->B,1,&row,1,&col,barray,addv);CHKERRQ(ierr);
359ab26458aSBarry Smith         }
360ab26458aSBarry Smith       }
361d64ed03dSBarry Smith     } else {
3624cb17eb5SBarry Smith       if (mat->nooffprocentries) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Setting off process row %D even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set",im[i]);
363ab26458aSBarry Smith       if (!baij->donotstash) {
364ff2fd236SBarry Smith         if (roworiented) {
3656fa18ffdSBarry Smith           ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
366ff2fd236SBarry Smith         } else {
3676fa18ffdSBarry Smith           ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
368ff2fd236SBarry Smith         }
369abef11f7SSatish Balay       }
370ab26458aSBarry Smith     }
371ab26458aSBarry Smith   }
3723a40ed3dSBarry Smith   PetscFunctionReturn(0);
373ab26458aSBarry Smith }
3746fa18ffdSBarry Smith 
3750bdbc534SSatish Balay #define HASH_KEY 0.6180339887
376b24ad042SBarry Smith #define HASH(size,key,tmp) (tmp = (key)*HASH_KEY,(PetscInt)((size)*(tmp-(PetscInt)tmp)))
377b24ad042SBarry Smith /* #define HASH(size,key) ((PetscInt)((size)*fmod(((key)*HASH_KEY),1))) */
378b24ad042SBarry Smith /* #define HASH(size,key,tmp) ((PetscInt)((size)*fmod(((key)*HASH_KEY),1))) */
3794a2ae208SSatish Balay #undef __FUNCT__
38097e5c40aSBarry Smith #define __FUNCT__ "MatSetValues_MPIBAIJ_HT"
38197e5c40aSBarry Smith PetscErrorCode MatSetValues_MPIBAIJ_HT(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv)
3820bdbc534SSatish Balay {
3830bdbc534SSatish Balay   Mat_MPIBAIJ    *baij       = (Mat_MPIBAIJ*)mat->data;
384ace3abfcSBarry Smith   PetscBool      roworiented = baij->roworiented;
385dfbe8321SBarry Smith   PetscErrorCode ierr;
386b24ad042SBarry Smith   PetscInt       i,j,row,col;
387d0f46423SBarry Smith   PetscInt       rstart_orig=mat->rmap->rstart;
388d0f46423SBarry Smith   PetscInt       rend_orig  =mat->rmap->rend,Nbs=baij->Nbs;
389d0f46423SBarry Smith   PetscInt       h1,key,size=baij->ht_size,bs=mat->rmap->bs,*HT=baij->ht,idx;
390329f5518SBarry Smith   PetscReal      tmp;
3913eda8832SBarry Smith   MatScalar      **HD = baij->hd,value;
3922515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
393b24ad042SBarry Smith   PetscInt total_ct=baij->ht_total_ct,insert_ct=baij->ht_insert_ct;
3944a15367fSSatish Balay #endif
3950bdbc534SSatish Balay 
3960bdbc534SSatish Balay   PetscFunctionBegin;
3970bdbc534SSatish Balay   for (i=0; i<m; i++) {
3982515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
399e32f2f54SBarry Smith     if (im[i] < 0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative row");
400e32f2f54SBarry Smith     if (im[i] >= mat->rmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],mat->rmap->N-1);
4010bdbc534SSatish Balay #endif
4020bdbc534SSatish Balay     row = im[i];
403c2760754SSatish Balay     if (row >= rstart_orig && row < rend_orig) {
4040bdbc534SSatish Balay       for (j=0; j<n; j++) {
4050bdbc534SSatish Balay         col = in[j];
406db4deed7SKarl Rupp         if (roworiented) value = v[i*n+j];
407db4deed7SKarl Rupp         else             value = v[i+j*m];
408b24ad042SBarry Smith         /* Look up PetscInto the Hash Table */
409c2760754SSatish Balay         key = (row/bs)*Nbs+(col/bs)+1;
410c2760754SSatish Balay         h1  = HASH(size,key,tmp);
4110bdbc534SSatish Balay 
412c2760754SSatish Balay 
413c2760754SSatish Balay         idx = h1;
4142515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
415187ce0cbSSatish Balay         insert_ct++;
416187ce0cbSSatish Balay         total_ct++;
417187ce0cbSSatish Balay         if (HT[idx] != key) {
418187ce0cbSSatish Balay           for (idx=h1; (idx<size) && (HT[idx]!=key); idx++,total_ct++) ;
419187ce0cbSSatish Balay           if (idx == size) {
420187ce0cbSSatish Balay             for (idx=0; (idx<h1) && (HT[idx]!=key); idx++,total_ct++) ;
421f23aa3ddSBarry Smith             if (idx == h1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"(%D,%D) has no entry in the hash table", row, col);
422187ce0cbSSatish Balay           }
423187ce0cbSSatish Balay         }
424187ce0cbSSatish Balay #else
425c2760754SSatish Balay         if (HT[idx] != key) {
426c2760754SSatish Balay           for (idx=h1; (idx<size) && (HT[idx]!=key); idx++) ;
427c2760754SSatish Balay           if (idx == size) {
428c2760754SSatish Balay             for (idx=0; (idx<h1) && (HT[idx]!=key); idx++) ;
429f23aa3ddSBarry Smith             if (idx == h1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"(%D,%D) has no entry in the hash table", row, col);
430c2760754SSatish Balay           }
431c2760754SSatish Balay         }
432187ce0cbSSatish Balay #endif
433c2760754SSatish Balay         /* A HASH table entry is found, so insert the values at the correct address */
434c2760754SSatish Balay         if (addv == ADD_VALUES) *(HD[idx]+ (col % bs)*bs + (row % bs)) += value;
435c2760754SSatish Balay         else                    *(HD[idx]+ (col % bs)*bs + (row % bs))  = value;
4360bdbc534SSatish Balay       }
43726fbe8dcSKarl Rupp     } else if (!baij->donotstash) {
438ff2fd236SBarry Smith       if (roworiented) {
439b400d20cSBarry Smith         ierr = MatStashValuesRow_Private(&mat->stash,im[i],n,in,v+i*n,PETSC_FALSE);CHKERRQ(ierr);
440ff2fd236SBarry Smith       } else {
441b400d20cSBarry Smith         ierr = MatStashValuesCol_Private(&mat->stash,im[i],n,in,v+i,m,PETSC_FALSE);CHKERRQ(ierr);
4420bdbc534SSatish Balay       }
4430bdbc534SSatish Balay     }
4440bdbc534SSatish Balay   }
4452515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
446187ce0cbSSatish Balay   baij->ht_total_ct  = total_ct;
447187ce0cbSSatish Balay   baij->ht_insert_ct = insert_ct;
448187ce0cbSSatish Balay #endif
4490bdbc534SSatish Balay   PetscFunctionReturn(0);
4500bdbc534SSatish Balay }
4510bdbc534SSatish Balay 
4524a2ae208SSatish Balay #undef __FUNCT__
45397e5c40aSBarry Smith #define __FUNCT__ "MatSetValuesBlocked_MPIBAIJ_HT"
45497e5c40aSBarry Smith PetscErrorCode MatSetValuesBlocked_MPIBAIJ_HT(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv)
4550bdbc534SSatish Balay {
4560bdbc534SSatish Balay   Mat_MPIBAIJ       *baij       = (Mat_MPIBAIJ*)mat->data;
457ace3abfcSBarry Smith   PetscBool         roworiented = baij->roworiented;
458dfbe8321SBarry Smith   PetscErrorCode    ierr;
459b24ad042SBarry Smith   PetscInt          i,j,ii,jj,row,col;
460899cda47SBarry Smith   PetscInt          rstart=baij->rstartbs;
461d0f46423SBarry Smith   PetscInt          rend  =mat->rmap->rend,stepval,bs=mat->rmap->bs,bs2=baij->bs2,nbs2=n*bs2;
462b24ad042SBarry Smith   PetscInt          h1,key,size=baij->ht_size,idx,*HT=baij->ht,Nbs=baij->Nbs;
463329f5518SBarry Smith   PetscReal         tmp;
4643eda8832SBarry Smith   MatScalar         **HD = baij->hd,*baij_a;
465dd6ea824SBarry Smith   const PetscScalar *v_t,*value;
4662515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
467b24ad042SBarry Smith   PetscInt total_ct=baij->ht_total_ct,insert_ct=baij->ht_insert_ct;
4684a15367fSSatish Balay #endif
4690bdbc534SSatish Balay 
470d0a41580SSatish Balay   PetscFunctionBegin;
47126fbe8dcSKarl Rupp   if (roworiented) stepval = (n-1)*bs;
47226fbe8dcSKarl Rupp   else stepval = (m-1)*bs;
47326fbe8dcSKarl Rupp 
4740bdbc534SSatish Balay   for (i=0; i<m; i++) {
4752515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
476e32f2f54SBarry Smith     if (im[i] < 0) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %D",im[i]);
477e32f2f54SBarry Smith     if (im[i] >= baij->Mbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],baij->Mbs-1);
4780bdbc534SSatish Balay #endif
4790bdbc534SSatish Balay     row = im[i];
480ab715e2cSSatish Balay     v_t = v + i*nbs2;
481c2760754SSatish Balay     if (row >= rstart && row < rend) {
4820bdbc534SSatish Balay       for (j=0; j<n; j++) {
4830bdbc534SSatish Balay         col = in[j];
4840bdbc534SSatish Balay 
4850bdbc534SSatish Balay         /* Look up into the Hash Table */
486c2760754SSatish Balay         key = row*Nbs+col+1;
487c2760754SSatish Balay         h1  = HASH(size,key,tmp);
4880bdbc534SSatish Balay 
489c2760754SSatish Balay         idx = h1;
4902515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
491187ce0cbSSatish Balay         total_ct++;
492187ce0cbSSatish Balay         insert_ct++;
493187ce0cbSSatish Balay         if (HT[idx] != key) {
494187ce0cbSSatish Balay           for (idx=h1; (idx<size) && (HT[idx]!=key); idx++,total_ct++) ;
495187ce0cbSSatish Balay           if (idx == size) {
496187ce0cbSSatish Balay             for (idx=0; (idx<h1) && (HT[idx]!=key); idx++,total_ct++) ;
497f23aa3ddSBarry Smith             if (idx == h1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"(%D,%D) has no entry in the hash table", row, col);
498187ce0cbSSatish Balay           }
499187ce0cbSSatish Balay         }
500187ce0cbSSatish Balay #else
501c2760754SSatish Balay         if (HT[idx] != key) {
502c2760754SSatish Balay           for (idx=h1; (idx<size) && (HT[idx]!=key); idx++) ;
503c2760754SSatish Balay           if (idx == size) {
504c2760754SSatish Balay             for (idx=0; (idx<h1) && (HT[idx]!=key); idx++) ;
505f23aa3ddSBarry Smith             if (idx == h1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"(%D,%D) has no entry in the hash table", row, col);
506c2760754SSatish Balay           }
507c2760754SSatish Balay         }
508187ce0cbSSatish Balay #endif
509c2760754SSatish Balay         baij_a = HD[idx];
5100bdbc534SSatish Balay         if (roworiented) {
511c2760754SSatish Balay           /*value = v + i*(stepval+bs)*bs + j*bs;*/
512187ce0cbSSatish Balay           /* value = v + (i*(stepval+bs)+j)*bs; */
513187ce0cbSSatish Balay           value = v_t;
514187ce0cbSSatish Balay           v_t  += bs;
515fef45726SSatish Balay           if (addv == ADD_VALUES) {
516c2760754SSatish Balay             for (ii=0; ii<bs; ii++,value+=stepval) {
517c2760754SSatish Balay               for (jj=ii; jj<bs2; jj+=bs) {
518fef45726SSatish Balay                 baij_a[jj] += *value++;
519b4cc0f5aSSatish Balay               }
520b4cc0f5aSSatish Balay             }
521fef45726SSatish Balay           } else {
522c2760754SSatish Balay             for (ii=0; ii<bs; ii++,value+=stepval) {
523c2760754SSatish Balay               for (jj=ii; jj<bs2; jj+=bs) {
524fef45726SSatish Balay                 baij_a[jj] = *value++;
525fef45726SSatish Balay               }
526fef45726SSatish Balay             }
527fef45726SSatish Balay           }
5280bdbc534SSatish Balay         } else {
5290bdbc534SSatish Balay           value = v + j*(stepval+bs)*bs + i*bs;
530fef45726SSatish Balay           if (addv == ADD_VALUES) {
531b4cc0f5aSSatish Balay             for (ii=0; ii<bs; ii++,value+=stepval,baij_a+=bs) {
5320bdbc534SSatish Balay               for (jj=0; jj<bs; jj++) {
533fef45726SSatish Balay                 baij_a[jj] += *value++;
534fef45726SSatish Balay               }
535fef45726SSatish Balay             }
536fef45726SSatish Balay           } else {
537fef45726SSatish Balay             for (ii=0; ii<bs; ii++,value+=stepval,baij_a+=bs) {
538fef45726SSatish Balay               for (jj=0; jj<bs; jj++) {
539fef45726SSatish Balay                 baij_a[jj] = *value++;
540fef45726SSatish Balay               }
541b4cc0f5aSSatish Balay             }
5420bdbc534SSatish Balay           }
5430bdbc534SSatish Balay         }
5440bdbc534SSatish Balay       }
5450bdbc534SSatish Balay     } else {
5460bdbc534SSatish Balay       if (!baij->donotstash) {
5470bdbc534SSatish Balay         if (roworiented) {
5488798bf22SSatish Balay           ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
5490bdbc534SSatish Balay         } else {
5508798bf22SSatish Balay           ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
5510bdbc534SSatish Balay         }
5520bdbc534SSatish Balay       }
5530bdbc534SSatish Balay     }
5540bdbc534SSatish Balay   }
5552515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
556187ce0cbSSatish Balay   baij->ht_total_ct  = total_ct;
557187ce0cbSSatish Balay   baij->ht_insert_ct = insert_ct;
558187ce0cbSSatish Balay #endif
5590bdbc534SSatish Balay   PetscFunctionReturn(0);
5600bdbc534SSatish Balay }
561133cdb44SSatish Balay 
5624a2ae208SSatish Balay #undef __FUNCT__
5634a2ae208SSatish Balay #define __FUNCT__ "MatGetValues_MPIBAIJ"
564b24ad042SBarry Smith PetscErrorCode MatGetValues_MPIBAIJ(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[])
565d6de1c52SSatish Balay {
566d6de1c52SSatish Balay   Mat_MPIBAIJ    *baij = (Mat_MPIBAIJ*)mat->data;
5676849ba73SBarry Smith   PetscErrorCode ierr;
568d0f46423SBarry Smith   PetscInt       bs       = mat->rmap->bs,i,j,bsrstart = mat->rmap->rstart,bsrend = mat->rmap->rend;
569d0f46423SBarry Smith   PetscInt       bscstart = mat->cmap->rstart,bscend = mat->cmap->rend,row,col,data;
570d6de1c52SSatish Balay 
571133cdb44SSatish Balay   PetscFunctionBegin;
572d6de1c52SSatish Balay   for (i=0; i<m; i++) {
573e32f2f54SBarry Smith     if (idxm[i] < 0) continue; /* SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %D",idxm[i]);*/
574e32f2f54SBarry Smith     if (idxm[i] >= mat->rmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",idxm[i],mat->rmap->N-1);
575d6de1c52SSatish Balay     if (idxm[i] >= bsrstart && idxm[i] < bsrend) {
576d6de1c52SSatish Balay       row = idxm[i] - bsrstart;
577d6de1c52SSatish Balay       for (j=0; j<n; j++) {
578e32f2f54SBarry Smith         if (idxn[j] < 0) continue; /* SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative column: %D",idxn[j]); */
579e32f2f54SBarry Smith         if (idxn[j] >= mat->cmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",idxn[j],mat->cmap->N-1);
580d6de1c52SSatish Balay         if (idxn[j] >= bscstart && idxn[j] < bscend) {
581d6de1c52SSatish Balay           col  = idxn[j] - bscstart;
58298dd23e9SBarry Smith           ierr = MatGetValues_SeqBAIJ(baij->A,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr);
583d64ed03dSBarry Smith         } else {
584905e6a2fSBarry Smith           if (!baij->colmap) {
585ab9863d7SBarry Smith             ierr = MatCreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
586905e6a2fSBarry Smith           }
587aa482453SBarry Smith #if defined(PETSC_USE_CTABLE)
5880f5bd95cSBarry Smith           ierr = PetscTableFind(baij->colmap,idxn[j]/bs+1,&data);CHKERRQ(ierr);
589fa46199cSSatish Balay           data--;
59048e59246SSatish Balay #else
59148e59246SSatish Balay           data = baij->colmap[idxn[j]/bs]-1;
59248e59246SSatish Balay #endif
59348e59246SSatish Balay           if ((data < 0) || (baij->garray[data/bs] != idxn[j]/bs)) *(v+i*n+j) = 0.0;
594d9d09a02SSatish Balay           else {
59548e59246SSatish Balay             col  = data + idxn[j]%bs;
59698dd23e9SBarry Smith             ierr = MatGetValues_SeqBAIJ(baij->B,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr);
597d6de1c52SSatish Balay           }
598d6de1c52SSatish Balay         }
599d6de1c52SSatish Balay       }
600f23aa3ddSBarry Smith     } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local values currently supported");
601d6de1c52SSatish Balay   }
6023a40ed3dSBarry Smith   PetscFunctionReturn(0);
603d6de1c52SSatish Balay }
604d6de1c52SSatish Balay 
6054a2ae208SSatish Balay #undef __FUNCT__
6064a2ae208SSatish Balay #define __FUNCT__ "MatNorm_MPIBAIJ"
607dfbe8321SBarry Smith PetscErrorCode MatNorm_MPIBAIJ(Mat mat,NormType type,PetscReal *nrm)
608d6de1c52SSatish Balay {
609d6de1c52SSatish Balay   Mat_MPIBAIJ    *baij = (Mat_MPIBAIJ*)mat->data;
610d6de1c52SSatish Balay   Mat_SeqBAIJ    *amat = (Mat_SeqBAIJ*)baij->A->data,*bmat = (Mat_SeqBAIJ*)baij->B->data;
611dfbe8321SBarry Smith   PetscErrorCode ierr;
612d0f46423SBarry Smith   PetscInt       i,j,bs2=baij->bs2,bs=baij->A->rmap->bs,nz,row,col;
613329f5518SBarry Smith   PetscReal      sum = 0.0;
6143eda8832SBarry Smith   MatScalar      *v;
615d6de1c52SSatish Balay 
616d64ed03dSBarry Smith   PetscFunctionBegin;
617d6de1c52SSatish Balay   if (baij->size == 1) {
618064f8208SBarry Smith     ierr =  MatNorm(baij->A,type,nrm);CHKERRQ(ierr);
619d6de1c52SSatish Balay   } else {
620d6de1c52SSatish Balay     if (type == NORM_FROBENIUS) {
621d6de1c52SSatish Balay       v  = amat->a;
6228a62d963SHong Zhang       nz = amat->nz*bs2;
6238a62d963SHong Zhang       for (i=0; i<nz; i++) {
624329f5518SBarry Smith         sum += PetscRealPart(PetscConj(*v)*(*v)); v++;
625d6de1c52SSatish Balay       }
626d6de1c52SSatish Balay       v  = bmat->a;
6278a62d963SHong Zhang       nz = bmat->nz*bs2;
6288a62d963SHong Zhang       for (i=0; i<nz; i++) {
629329f5518SBarry Smith         sum += PetscRealPart(PetscConj(*v)*(*v)); v++;
630d6de1c52SSatish Balay       }
631ce94432eSBarry Smith       ierr = MPI_Allreduce(&sum,nrm,1,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
6328f1a2a5eSBarry Smith       *nrm = PetscSqrtReal(*nrm);
6338a62d963SHong Zhang     } else if (type == NORM_1) { /* max column sum */
6348a62d963SHong Zhang       PetscReal *tmp,*tmp2;
635899cda47SBarry Smith       PetscInt  *jj,*garray=baij->garray,cstart=baij->rstartbs;
636dcca6d9dSJed Brown       ierr = PetscMalloc2(mat->cmap->N,&tmp,mat->cmap->N,&tmp2);CHKERRQ(ierr);
637d0f46423SBarry Smith       ierr = PetscMemzero(tmp,mat->cmap->N*sizeof(PetscReal));CHKERRQ(ierr);
6388a62d963SHong Zhang       v    = amat->a; jj = amat->j;
6398a62d963SHong Zhang       for (i=0; i<amat->nz; i++) {
6408a62d963SHong Zhang         for (j=0; j<bs; j++) {
6418a62d963SHong Zhang           col = bs*(cstart + *jj) + j; /* column index */
6428a62d963SHong Zhang           for (row=0; row<bs; row++) {
6438a62d963SHong Zhang             tmp[col] += PetscAbsScalar(*v);  v++;
6448a62d963SHong Zhang           }
6458a62d963SHong Zhang         }
6468a62d963SHong Zhang         jj++;
6478a62d963SHong Zhang       }
6488a62d963SHong Zhang       v = bmat->a; jj = bmat->j;
6498a62d963SHong Zhang       for (i=0; i<bmat->nz; i++) {
6508a62d963SHong Zhang         for (j=0; j<bs; j++) {
6518a62d963SHong Zhang           col = bs*garray[*jj] + j;
6528a62d963SHong Zhang           for (row=0; row<bs; row++) {
6538a62d963SHong Zhang             tmp[col] += PetscAbsScalar(*v); v++;
6548a62d963SHong Zhang           }
6558a62d963SHong Zhang         }
6568a62d963SHong Zhang         jj++;
6578a62d963SHong Zhang       }
658ce94432eSBarry Smith       ierr = MPI_Allreduce(tmp,tmp2,mat->cmap->N,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
6598a62d963SHong Zhang       *nrm = 0.0;
660d0f46423SBarry Smith       for (j=0; j<mat->cmap->N; j++) {
6618a62d963SHong Zhang         if (tmp2[j] > *nrm) *nrm = tmp2[j];
6628a62d963SHong Zhang       }
663fca92195SBarry Smith       ierr = PetscFree2(tmp,tmp2);CHKERRQ(ierr);
6648a62d963SHong Zhang     } else if (type == NORM_INFINITY) { /* max row sum */
665577dd1f9SKris Buschelman       PetscReal *sums;
666785e854fSJed Brown       ierr = PetscMalloc1(bs,&sums);CHKERRQ(ierr);
6678a62d963SHong Zhang       sum  = 0.0;
6688a62d963SHong Zhang       for (j=0; j<amat->mbs; j++) {
6698a62d963SHong Zhang         for (row=0; row<bs; row++) sums[row] = 0.0;
6708a62d963SHong Zhang         v  = amat->a + bs2*amat->i[j];
6718a62d963SHong Zhang         nz = amat->i[j+1]-amat->i[j];
6728a62d963SHong Zhang         for (i=0; i<nz; i++) {
6738a62d963SHong Zhang           for (col=0; col<bs; col++) {
6748a62d963SHong Zhang             for (row=0; row<bs; row++) {
6758a62d963SHong Zhang               sums[row] += PetscAbsScalar(*v); v++;
6768a62d963SHong Zhang             }
6778a62d963SHong Zhang           }
6788a62d963SHong Zhang         }
6798a62d963SHong Zhang         v  = bmat->a + bs2*bmat->i[j];
6808a62d963SHong Zhang         nz = bmat->i[j+1]-bmat->i[j];
6818a62d963SHong Zhang         for (i=0; i<nz; i++) {
6828a62d963SHong Zhang           for (col=0; col<bs; col++) {
6838a62d963SHong Zhang             for (row=0; row<bs; row++) {
6848a62d963SHong Zhang               sums[row] += PetscAbsScalar(*v); v++;
6858a62d963SHong Zhang             }
6868a62d963SHong Zhang           }
6878a62d963SHong Zhang         }
6888a62d963SHong Zhang         for (row=0; row<bs; row++) {
6898a62d963SHong Zhang           if (sums[row] > sum) sum = sums[row];
6908a62d963SHong Zhang         }
6918a62d963SHong Zhang       }
692ce94432eSBarry Smith       ierr = MPI_Allreduce(&sum,nrm,1,MPIU_REAL,MPIU_MAX,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
693577dd1f9SKris Buschelman       ierr = PetscFree(sums);CHKERRQ(ierr);
694ce94432eSBarry Smith     } else SETERRQ(PetscObjectComm((PetscObject)mat),PETSC_ERR_SUP,"No support for this norm yet");
695d64ed03dSBarry Smith   }
6963a40ed3dSBarry Smith   PetscFunctionReturn(0);
697d6de1c52SSatish Balay }
69857b952d6SSatish Balay 
699fef45726SSatish Balay /*
700fef45726SSatish Balay   Creates the hash table, and sets the table
701fef45726SSatish Balay   This table is created only once.
702fef45726SSatish Balay   If new entried need to be added to the matrix
703fef45726SSatish Balay   then the hash table has to be destroyed and
704fef45726SSatish Balay   recreated.
705fef45726SSatish Balay */
7064a2ae208SSatish Balay #undef __FUNCT__
7074a2ae208SSatish Balay #define __FUNCT__ "MatCreateHashTable_MPIBAIJ_Private"
708dfbe8321SBarry Smith PetscErrorCode MatCreateHashTable_MPIBAIJ_Private(Mat mat,PetscReal factor)
709596b8d2eSBarry Smith {
710596b8d2eSBarry Smith   Mat_MPIBAIJ    *baij = (Mat_MPIBAIJ*)mat->data;
711596b8d2eSBarry Smith   Mat            A     = baij->A,B=baij->B;
712596b8d2eSBarry Smith   Mat_SeqBAIJ    *a    = (Mat_SeqBAIJ*)A->data,*b=(Mat_SeqBAIJ*)B->data;
713b24ad042SBarry Smith   PetscInt       i,j,k,nz=a->nz+b->nz,h1,*ai=a->i,*aj=a->j,*bi=b->i,*bj=b->j;
7146849ba73SBarry Smith   PetscErrorCode ierr;
715fca92195SBarry Smith   PetscInt       ht_size,bs2=baij->bs2,rstart=baij->rstartbs;
716899cda47SBarry Smith   PetscInt       cstart=baij->cstartbs,*garray=baij->garray,row,col,Nbs=baij->Nbs;
717b24ad042SBarry Smith   PetscInt       *HT,key;
7183eda8832SBarry Smith   MatScalar      **HD;
719329f5518SBarry Smith   PetscReal      tmp;
7206cf91177SBarry Smith #if defined(PETSC_USE_INFO)
721b24ad042SBarry Smith   PetscInt ct=0,max=0;
7224a15367fSSatish Balay #endif
723fef45726SSatish Balay 
724d64ed03dSBarry Smith   PetscFunctionBegin;
725fca92195SBarry Smith   if (baij->ht) PetscFunctionReturn(0);
726fef45726SSatish Balay 
727fca92195SBarry Smith   baij->ht_size = (PetscInt)(factor*nz);
728fca92195SBarry Smith   ht_size       = baij->ht_size;
7290bdbc534SSatish Balay 
730fef45726SSatish Balay   /* Allocate Memory for Hash Table */
7311795a4d1SJed Brown   ierr = PetscCalloc2(ht_size,&baij->hd,ht_size,&baij->ht);CHKERRQ(ierr);
732b9e4cc15SSatish Balay   HD   = baij->hd;
733a07cd24cSSatish Balay   HT   = baij->ht;
734b9e4cc15SSatish Balay 
735596b8d2eSBarry Smith   /* Loop Over A */
7360bdbc534SSatish Balay   for (i=0; i<a->mbs; i++) {
737596b8d2eSBarry Smith     for (j=ai[i]; j<ai[i+1]; j++) {
7380bdbc534SSatish Balay       row = i+rstart;
7390bdbc534SSatish Balay       col = aj[j]+cstart;
740596b8d2eSBarry Smith 
741187ce0cbSSatish Balay       key = row*Nbs + col + 1;
742fca92195SBarry Smith       h1  = HASH(ht_size,key,tmp);
743fca92195SBarry Smith       for (k=0; k<ht_size; k++) {
744fca92195SBarry Smith         if (!HT[(h1+k)%ht_size]) {
745fca92195SBarry Smith           HT[(h1+k)%ht_size] = key;
746fca92195SBarry Smith           HD[(h1+k)%ht_size] = a->a + j*bs2;
747596b8d2eSBarry Smith           break;
7486cf91177SBarry Smith #if defined(PETSC_USE_INFO)
749187ce0cbSSatish Balay         } else {
750187ce0cbSSatish Balay           ct++;
751187ce0cbSSatish Balay #endif
752596b8d2eSBarry Smith         }
753187ce0cbSSatish Balay       }
7546cf91177SBarry Smith #if defined(PETSC_USE_INFO)
755187ce0cbSSatish Balay       if (k> max) max = k;
756187ce0cbSSatish Balay #endif
757596b8d2eSBarry Smith     }
758596b8d2eSBarry Smith   }
759596b8d2eSBarry Smith   /* Loop Over B */
7600bdbc534SSatish Balay   for (i=0; i<b->mbs; i++) {
761596b8d2eSBarry Smith     for (j=bi[i]; j<bi[i+1]; j++) {
7620bdbc534SSatish Balay       row = i+rstart;
7630bdbc534SSatish Balay       col = garray[bj[j]];
764187ce0cbSSatish Balay       key = row*Nbs + col + 1;
765fca92195SBarry Smith       h1  = HASH(ht_size,key,tmp);
766fca92195SBarry Smith       for (k=0; k<ht_size; k++) {
767fca92195SBarry Smith         if (!HT[(h1+k)%ht_size]) {
768fca92195SBarry Smith           HT[(h1+k)%ht_size] = key;
769fca92195SBarry Smith           HD[(h1+k)%ht_size] = b->a + j*bs2;
770596b8d2eSBarry Smith           break;
7716cf91177SBarry Smith #if defined(PETSC_USE_INFO)
772187ce0cbSSatish Balay         } else {
773187ce0cbSSatish Balay           ct++;
774187ce0cbSSatish Balay #endif
775596b8d2eSBarry Smith         }
776187ce0cbSSatish Balay       }
7776cf91177SBarry Smith #if defined(PETSC_USE_INFO)
778187ce0cbSSatish Balay       if (k> max) max = k;
779187ce0cbSSatish Balay #endif
780596b8d2eSBarry Smith     }
781596b8d2eSBarry Smith   }
782596b8d2eSBarry Smith 
783596b8d2eSBarry Smith   /* Print Summary */
7846cf91177SBarry Smith #if defined(PETSC_USE_INFO)
785fca92195SBarry Smith   for (i=0,j=0; i<ht_size; i++) {
78626fbe8dcSKarl Rupp     if (HT[i]) j++;
787c38d4ed2SBarry Smith   }
7881e2582c4SBarry Smith   ierr = PetscInfo2(mat,"Average Search = %5.2f,max search = %D\n",(!j)? 0.0:((PetscReal)(ct+j))/j,max);CHKERRQ(ierr);
789187ce0cbSSatish Balay #endif
7903a40ed3dSBarry Smith   PetscFunctionReturn(0);
791596b8d2eSBarry Smith }
79257b952d6SSatish Balay 
7934a2ae208SSatish Balay #undef __FUNCT__
7944a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyBegin_MPIBAIJ"
795dfbe8321SBarry Smith PetscErrorCode MatAssemblyBegin_MPIBAIJ(Mat mat,MatAssemblyType mode)
796bbb85fb3SSatish Balay {
797bbb85fb3SSatish Balay   Mat_MPIBAIJ    *baij = (Mat_MPIBAIJ*)mat->data;
798dfbe8321SBarry Smith   PetscErrorCode ierr;
799b24ad042SBarry Smith   PetscInt       nstash,reallocs;
800bbb85fb3SSatish Balay   InsertMode     addv;
801bbb85fb3SSatish Balay 
802bbb85fb3SSatish Balay   PetscFunctionBegin;
80326fbe8dcSKarl Rupp   if (baij->donotstash || mat->nooffprocentries) PetscFunctionReturn(0);
804bbb85fb3SSatish Balay 
805bbb85fb3SSatish Balay   /* make sure all processors are either in INSERTMODE or ADDMODE */
806ce94432eSBarry Smith   ierr = MPI_Allreduce((PetscEnum*)&mat->insertmode,(PetscEnum*)&addv,1,MPIU_ENUM,MPI_BOR,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
807ce94432eSBarry Smith   if (addv == (ADD_VALUES|INSERT_VALUES)) SETERRQ(PetscObjectComm((PetscObject)mat),PETSC_ERR_ARG_WRONGSTATE,"Some processors inserted others added");
808bbb85fb3SSatish Balay   mat->insertmode = addv; /* in case this processor had no cache */
809bbb85fb3SSatish Balay 
810d0f46423SBarry Smith   ierr = MatStashScatterBegin_Private(mat,&mat->stash,mat->rmap->range);CHKERRQ(ierr);
8111e2582c4SBarry Smith   ierr = MatStashScatterBegin_Private(mat,&mat->bstash,baij->rangebs);CHKERRQ(ierr);
8128798bf22SSatish Balay   ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr);
8131e2582c4SBarry Smith   ierr = PetscInfo2(mat,"Stash has %D entries,uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr);
81446680499SSatish Balay   ierr = MatStashGetInfo_Private(&mat->bstash,&nstash,&reallocs);CHKERRQ(ierr);
8151e2582c4SBarry Smith   ierr = PetscInfo2(mat,"Block-Stash has %D entries, uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr);
816bbb85fb3SSatish Balay   PetscFunctionReturn(0);
817bbb85fb3SSatish Balay }
818bbb85fb3SSatish Balay 
8194a2ae208SSatish Balay #undef __FUNCT__
8204a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyEnd_MPIBAIJ"
821dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_MPIBAIJ(Mat mat,MatAssemblyType mode)
822bbb85fb3SSatish Balay {
823bbb85fb3SSatish Balay   Mat_MPIBAIJ    *baij=(Mat_MPIBAIJ*)mat->data;
82491c97fd4SSatish Balay   Mat_SeqBAIJ    *a   =(Mat_SeqBAIJ*)baij->A->data;
8256849ba73SBarry Smith   PetscErrorCode ierr;
826b24ad042SBarry Smith   PetscInt       i,j,rstart,ncols,flg,bs2=baij->bs2;
827e44c0bd4SBarry Smith   PetscInt       *row,*col;
828ace3abfcSBarry Smith   PetscBool      r1,r2,r3,other_disassembled;
8293eda8832SBarry Smith   MatScalar      *val;
830bbb85fb3SSatish Balay   InsertMode     addv = mat->insertmode;
831b24ad042SBarry Smith   PetscMPIInt    n;
832bbb85fb3SSatish Balay 
833bbb85fb3SSatish Balay   PetscFunctionBegin;
8345fd66863SKarl Rupp   /* do not use 'b=(Mat_SeqBAIJ*)baij->B->data' as B can be reset in disassembly */
8354cb17eb5SBarry Smith   if (!baij->donotstash && !mat->nooffprocentries) {
836a2d1c673SSatish Balay     while (1) {
8378798bf22SSatish Balay       ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr);
838a2d1c673SSatish Balay       if (!flg) break;
839a2d1c673SSatish Balay 
840bbb85fb3SSatish Balay       for (i=0; i<n;) {
841bbb85fb3SSatish Balay         /* Now identify the consecutive vals belonging to the same row */
84226fbe8dcSKarl Rupp         for (j=i,rstart=row[j]; j<n; j++) {
84326fbe8dcSKarl Rupp           if (row[j] != rstart) break;
84426fbe8dcSKarl Rupp         }
845bbb85fb3SSatish Balay         if (j < n) ncols = j-i;
846bbb85fb3SSatish Balay         else       ncols = n-i;
847bbb85fb3SSatish Balay         /* Now assemble all these values with a single function call */
84897e5c40aSBarry Smith         ierr = MatSetValues_MPIBAIJ(mat,1,row+i,ncols,col+i,val+i,addv);CHKERRQ(ierr);
849bbb85fb3SSatish Balay         i    = j;
850bbb85fb3SSatish Balay       }
851bbb85fb3SSatish Balay     }
8528798bf22SSatish Balay     ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr);
853a2d1c673SSatish Balay     /* Now process the block-stash. Since the values are stashed column-oriented,
854a2d1c673SSatish Balay        set the roworiented flag to column oriented, and after MatSetValues()
855a2d1c673SSatish Balay        restore the original flags */
856a2d1c673SSatish Balay     r1 = baij->roworiented;
857a2d1c673SSatish Balay     r2 = a->roworiented;
85891c97fd4SSatish Balay     r3 = ((Mat_SeqBAIJ*)baij->B->data)->roworiented;
85926fbe8dcSKarl Rupp 
8607c922b88SBarry Smith     baij->roworiented = PETSC_FALSE;
8617c922b88SBarry Smith     a->roworiented    = PETSC_FALSE;
86226fbe8dcSKarl Rupp 
86391c97fd4SSatish Balay     (((Mat_SeqBAIJ*)baij->B->data))->roworiented = PETSC_FALSE; /* b->roworiented */
864a2d1c673SSatish Balay     while (1) {
8658798bf22SSatish Balay       ierr = MatStashScatterGetMesg_Private(&mat->bstash,&n,&row,&col,&val,&flg);CHKERRQ(ierr);
866a2d1c673SSatish Balay       if (!flg) break;
867a2d1c673SSatish Balay 
868a2d1c673SSatish Balay       for (i=0; i<n;) {
869a2d1c673SSatish Balay         /* Now identify the consecutive vals belonging to the same row */
87026fbe8dcSKarl Rupp         for (j=i,rstart=row[j]; j<n; j++) {
87126fbe8dcSKarl Rupp           if (row[j] != rstart) break;
87226fbe8dcSKarl Rupp         }
873a2d1c673SSatish Balay         if (j < n) ncols = j-i;
874a2d1c673SSatish Balay         else       ncols = n-i;
87597e5c40aSBarry Smith         ierr = MatSetValuesBlocked_MPIBAIJ(mat,1,row+i,ncols,col+i,val+i*bs2,addv);CHKERRQ(ierr);
876a2d1c673SSatish Balay         i    = j;
877a2d1c673SSatish Balay       }
878a2d1c673SSatish Balay     }
8798798bf22SSatish Balay     ierr = MatStashScatterEnd_Private(&mat->bstash);CHKERRQ(ierr);
88026fbe8dcSKarl Rupp 
881a2d1c673SSatish Balay     baij->roworiented = r1;
882a2d1c673SSatish Balay     a->roworiented    = r2;
88326fbe8dcSKarl Rupp 
88491c97fd4SSatish Balay     ((Mat_SeqBAIJ*)baij->B->data)->roworiented = r3; /* b->roworiented */
885bbb85fb3SSatish Balay   }
886bbb85fb3SSatish Balay 
887bbb85fb3SSatish Balay   ierr = MatAssemblyBegin(baij->A,mode);CHKERRQ(ierr);
888bbb85fb3SSatish Balay   ierr = MatAssemblyEnd(baij->A,mode);CHKERRQ(ierr);
889bbb85fb3SSatish Balay 
890bbb85fb3SSatish Balay   /* determine if any processor has disassembled, if so we must
891bbb85fb3SSatish Balay      also disassemble ourselfs, in order that we may reassemble. */
892bbb85fb3SSatish Balay   /*
893bbb85fb3SSatish Balay      if nonzero structure of submatrix B cannot change then we know that
894bbb85fb3SSatish Balay      no processor disassembled thus we can skip this stuff
895bbb85fb3SSatish Balay   */
896bbb85fb3SSatish Balay   if (!((Mat_SeqBAIJ*)baij->B->data)->nonew) {
897ce94432eSBarry Smith     ierr = MPI_Allreduce(&mat->was_assembled,&other_disassembled,1,MPIU_BOOL,MPI_PROD,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
898bbb85fb3SSatish Balay     if (mat->was_assembled && !other_disassembled) {
899ab9863d7SBarry Smith       ierr = MatDisAssemble_MPIBAIJ(mat);CHKERRQ(ierr);
900bbb85fb3SSatish Balay     }
901bbb85fb3SSatish Balay   }
902bbb85fb3SSatish Balay 
903bbb85fb3SSatish Balay   if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) {
904bbb85fb3SSatish Balay     ierr = MatSetUpMultiply_MPIBAIJ(mat);CHKERRQ(ierr);
905bbb85fb3SSatish Balay   }
906bbb85fb3SSatish Balay   ierr = MatAssemblyBegin(baij->B,mode);CHKERRQ(ierr);
907bbb85fb3SSatish Balay   ierr = MatAssemblyEnd(baij->B,mode);CHKERRQ(ierr);
908bbb85fb3SSatish Balay 
9096cf91177SBarry Smith #if defined(PETSC_USE_INFO)
910bbb85fb3SSatish Balay   if (baij->ht && mode== MAT_FINAL_ASSEMBLY) {
9111e2582c4SBarry Smith     ierr = PetscInfo1(mat,"Average Hash Table Search in MatSetValues = %5.2f\n",((PetscReal)baij->ht_total_ct)/baij->ht_insert_ct);CHKERRQ(ierr);
91226fbe8dcSKarl Rupp 
913bbb85fb3SSatish Balay     baij->ht_total_ct  = 0;
914bbb85fb3SSatish Balay     baij->ht_insert_ct = 0;
915bbb85fb3SSatish Balay   }
916bbb85fb3SSatish Balay #endif
917bbb85fb3SSatish Balay   if (baij->ht_flag && !baij->ht && mode == MAT_FINAL_ASSEMBLY) {
918bbb85fb3SSatish Balay     ierr = MatCreateHashTable_MPIBAIJ_Private(mat,baij->ht_fact);CHKERRQ(ierr);
91926fbe8dcSKarl Rupp 
920bbb85fb3SSatish Balay     mat->ops->setvalues        = MatSetValues_MPIBAIJ_HT;
921bbb85fb3SSatish Balay     mat->ops->setvaluesblocked = MatSetValuesBlocked_MPIBAIJ_HT;
922bbb85fb3SSatish Balay   }
923bbb85fb3SSatish Balay 
924fca92195SBarry Smith   ierr = PetscFree2(baij->rowvalues,baij->rowindices);CHKERRQ(ierr);
92526fbe8dcSKarl Rupp 
926606d414cSSatish Balay   baij->rowvalues = 0;
9274f9cfa9eSBarry Smith 
9284f9cfa9eSBarry Smith   /* if no new nonzero locations are allowed in matrix then only set the matrix state the first time through */
9294f9cfa9eSBarry Smith   if ((!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) || !((Mat_SeqBAIJ*)(baij->A->data))->nonew) {
930e56f5c9eSBarry Smith     PetscObjectState state = baij->A->nonzerostate + baij->B->nonzerostate;
93109e82e2bSBarry Smith     ierr = MPI_Allreduce(&state,&mat->nonzerostate,1,MPIU_INT64,MPI_SUM,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
932e56f5c9eSBarry Smith   }
933bbb85fb3SSatish Balay   PetscFunctionReturn(0);
934bbb85fb3SSatish Balay }
93557b952d6SSatish Balay 
9367da1fb6eSBarry Smith extern PetscErrorCode MatView_SeqBAIJ(Mat,PetscViewer);
9379804daf3SBarry Smith #include <petscdraw.h>
9384a2ae208SSatish Balay #undef __FUNCT__
9394a2ae208SSatish Balay #define __FUNCT__ "MatView_MPIBAIJ_ASCIIorDraworSocket"
9406849ba73SBarry Smith static PetscErrorCode MatView_MPIBAIJ_ASCIIorDraworSocket(Mat mat,PetscViewer viewer)
94157b952d6SSatish Balay {
94257b952d6SSatish Balay   Mat_MPIBAIJ       *baij = (Mat_MPIBAIJ*)mat->data;
943dfbe8321SBarry Smith   PetscErrorCode    ierr;
9447da1fb6eSBarry Smith   PetscMPIInt       rank = baij->rank;
945d0f46423SBarry Smith   PetscInt          bs   = mat->rmap->bs;
946ace3abfcSBarry Smith   PetscBool         iascii,isdraw;
947b0a32e0cSBarry Smith   PetscViewer       sviewer;
948f3ef73ceSBarry Smith   PetscViewerFormat format;
94957b952d6SSatish Balay 
950d64ed03dSBarry Smith   PetscFunctionBegin;
951251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr);
952251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr);
95332077d6dSBarry Smith   if (iascii) {
954b0a32e0cSBarry Smith     ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr);
955456192e2SBarry Smith     if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) {
9564e220ebcSLois Curfman McInnes       MatInfo info;
957ce94432eSBarry Smith       ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)mat),&rank);CHKERRQ(ierr);
958d41123aaSBarry Smith       ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr);
9597b23a99aSBarry Smith       ierr = PetscViewerASCIISynchronizedAllow(viewer,PETSC_TRUE);CHKERRQ(ierr);
96077431f27SBarry Smith       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Local rows %D nz %D nz alloced %D bs %D mem %D\n",
96116608c43SJed Brown                                                 rank,mat->rmap->n,(PetscInt)info.nz_used,(PetscInt)info.nz_allocated,mat->rmap->bs,(PetscInt)info.memory);CHKERRQ(ierr);
962d132466eSBarry Smith       ierr = MatGetInfo(baij->A,MAT_LOCAL,&info);CHKERRQ(ierr);
963e6dd01d4SJed Brown       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] on-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used);CHKERRQ(ierr);
964d132466eSBarry Smith       ierr = MatGetInfo(baij->B,MAT_LOCAL,&info);CHKERRQ(ierr);
965e6dd01d4SJed Brown       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] off-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used);CHKERRQ(ierr);
966b0a32e0cSBarry Smith       ierr = PetscViewerFlush(viewer);CHKERRQ(ierr);
9677b23a99aSBarry Smith       ierr = PetscViewerASCIISynchronizedAllow(viewer,PETSC_FALSE);CHKERRQ(ierr);
96807d81ca4SBarry Smith       ierr = PetscViewerASCIIPrintf(viewer,"Information on VecScatter used in matrix-vector product: \n");CHKERRQ(ierr);
96957b952d6SSatish Balay       ierr = VecScatterView(baij->Mvctx,viewer);CHKERRQ(ierr);
9703a40ed3dSBarry Smith       PetscFunctionReturn(0);
971fb9695e5SSatish Balay     } else if (format == PETSC_VIEWER_ASCII_INFO) {
97277431f27SBarry Smith       ierr = PetscViewerASCIIPrintf(viewer,"  block size is %D\n",bs);CHKERRQ(ierr);
9733a40ed3dSBarry Smith       PetscFunctionReturn(0);
97404929863SHong Zhang     } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) {
97504929863SHong Zhang       PetscFunctionReturn(0);
97657b952d6SSatish Balay     }
97757b952d6SSatish Balay   }
97857b952d6SSatish Balay 
9790f5bd95cSBarry Smith   if (isdraw) {
980b0a32e0cSBarry Smith     PetscDraw draw;
981ace3abfcSBarry Smith     PetscBool isnull;
982b0a32e0cSBarry Smith     ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr);
983b0a32e0cSBarry Smith     ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); if (isnull) PetscFunctionReturn(0);
98457b952d6SSatish Balay   }
98557b952d6SSatish Balay 
9867da1fb6eSBarry Smith   {
98757b952d6SSatish Balay     /* assemble the entire matrix onto first processor. */
98857b952d6SSatish Balay     Mat         A;
98957b952d6SSatish Balay     Mat_SeqBAIJ *Aloc;
990d0f46423SBarry Smith     PetscInt    M = mat->rmap->N,N = mat->cmap->N,*ai,*aj,col,i,j,k,*rvals,mbs = baij->mbs;
9913eda8832SBarry Smith     MatScalar   *a;
99257b952d6SSatish Balay 
993f204ca49SKris Buschelman     /* Here we are creating a temporary matrix, so will assume MPIBAIJ is acceptable */
994f204ca49SKris Buschelman     /* Perhaps this should be the type of mat? */
995ce94432eSBarry Smith     ierr = MatCreate(PetscObjectComm((PetscObject)mat),&A);CHKERRQ(ierr);
99657b952d6SSatish Balay     if (!rank) {
997f69a0ea3SMatthew Knepley       ierr = MatSetSizes(A,M,N,M,N);CHKERRQ(ierr);
998d64ed03dSBarry Smith     } else {
999f69a0ea3SMatthew Knepley       ierr = MatSetSizes(A,0,0,M,N);CHKERRQ(ierr);
100057b952d6SSatish Balay     }
1001f204ca49SKris Buschelman     ierr = MatSetType(A,MATMPIBAIJ);CHKERRQ(ierr);
10020298fd71SBarry Smith     ierr = MatMPIBAIJSetPreallocation(A,mat->rmap->bs,0,NULL,0,NULL);CHKERRQ(ierr);
10032b82e772SSatish Balay     ierr = MatSetOption(A,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_FALSE);CHKERRQ(ierr);
10043bb1ff40SBarry Smith     ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)A);CHKERRQ(ierr);
100557b952d6SSatish Balay 
100657b952d6SSatish Balay     /* copy over the A part */
100757b952d6SSatish Balay     Aloc = (Mat_SeqBAIJ*)baij->A->data;
100857b952d6SSatish Balay     ai   = Aloc->i; aj = Aloc->j; a = Aloc->a;
1009785e854fSJed Brown     ierr = PetscMalloc1(bs,&rvals);CHKERRQ(ierr);
101057b952d6SSatish Balay 
101157b952d6SSatish Balay     for (i=0; i<mbs; i++) {
1012899cda47SBarry Smith       rvals[0] = bs*(baij->rstartbs + i);
101326fbe8dcSKarl Rupp       for (j=1; j<bs; j++) rvals[j] = rvals[j-1] + 1;
101457b952d6SSatish Balay       for (j=ai[i]; j<ai[i+1]; j++) {
1015899cda47SBarry Smith         col = (baij->cstartbs+aj[j])*bs;
101657b952d6SSatish Balay         for (k=0; k<bs; k++) {
101797e5c40aSBarry Smith           ierr      = MatSetValues_MPIBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr);
1018cee3aa6bSSatish Balay           col++; a += bs;
101957b952d6SSatish Balay         }
102057b952d6SSatish Balay       }
102157b952d6SSatish Balay     }
102257b952d6SSatish Balay     /* copy over the B part */
102357b952d6SSatish Balay     Aloc = (Mat_SeqBAIJ*)baij->B->data;
102457b952d6SSatish Balay     ai   = Aloc->i; aj = Aloc->j; a = Aloc->a;
102557b952d6SSatish Balay     for (i=0; i<mbs; i++) {
1026899cda47SBarry Smith       rvals[0] = bs*(baij->rstartbs + i);
102726fbe8dcSKarl Rupp       for (j=1; j<bs; j++) rvals[j] = rvals[j-1] + 1;
102857b952d6SSatish Balay       for (j=ai[i]; j<ai[i+1]; j++) {
102957b952d6SSatish Balay         col = baij->garray[aj[j]]*bs;
103057b952d6SSatish Balay         for (k=0; k<bs; k++) {
103197e5c40aSBarry Smith           ierr      = MatSetValues_MPIBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr);
1032cee3aa6bSSatish Balay           col++; a += bs;
103357b952d6SSatish Balay         }
103457b952d6SSatish Balay       }
103557b952d6SSatish Balay     }
1036606d414cSSatish Balay     ierr = PetscFree(rvals);CHKERRQ(ierr);
10376d4a8577SBarry Smith     ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
10386d4a8577SBarry Smith     ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
103955843e3eSBarry Smith     /*
104055843e3eSBarry Smith        Everyone has to call to draw the matrix since the graphics waits are
1041b0a32e0cSBarry Smith        synchronized across all processors that share the PetscDraw object
104255843e3eSBarry Smith     */
1043b0a32e0cSBarry Smith     ierr = PetscViewerGetSingleton(viewer,&sviewer);CHKERRQ(ierr);
1044f14a1c24SBarry Smith     if (!rank) {
1045*ade3a672SBarry Smith       const char *matname;
1046*ade3a672SBarry Smith       ierr = PetscObjectGetName((PetscObject)mat,&matname);CHKERRQ(ierr);
1047*ade3a672SBarry Smith       ierr = PetscObjectSetName((PetscObject)((Mat_MPIBAIJ*)(A->data))->A,matname);CHKERRQ(ierr);
10487da1fb6eSBarry Smith       ierr = MatView_SeqBAIJ(((Mat_MPIBAIJ*)(A->data))->A,sviewer);CHKERRQ(ierr);
104957b952d6SSatish Balay     }
1050b0a32e0cSBarry Smith     ierr = PetscViewerRestoreSingleton(viewer,&sviewer);CHKERRQ(ierr);
10516bf464f9SBarry Smith     ierr = MatDestroy(&A);CHKERRQ(ierr);
105257b952d6SSatish Balay   }
10533a40ed3dSBarry Smith   PetscFunctionReturn(0);
105457b952d6SSatish Balay }
105557b952d6SSatish Balay 
10564a2ae208SSatish Balay #undef __FUNCT__
1057660746e0SBarry Smith #define __FUNCT__ "MatView_MPIBAIJ_Binary"
1058660746e0SBarry Smith static PetscErrorCode MatView_MPIBAIJ_Binary(Mat mat,PetscViewer viewer)
1059660746e0SBarry Smith {
1060660746e0SBarry Smith   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)mat->data;
1061660746e0SBarry Smith   Mat_SeqBAIJ    *A = (Mat_SeqBAIJ*)a->A->data;
1062660746e0SBarry Smith   Mat_SeqBAIJ    *B = (Mat_SeqBAIJ*)a->B->data;
1063660746e0SBarry Smith   PetscErrorCode ierr;
10645f48b12bSBarry Smith   PetscInt       i,*row_lens,*crow_lens,bs = mat->rmap->bs,j,k,bs2=a->bs2,header[4],nz,rlen;
1065e96a6426SSatish Balay   PetscInt       *range=0,nzmax,*column_indices,cnt,col,*garray = a->garray,cstart = mat->cmap->rstart/bs,len,pcnt,l,ll;
1066660746e0SBarry Smith   int            fd;
1067660746e0SBarry Smith   PetscScalar    *column_values;
1068660746e0SBarry Smith   FILE           *file;
1069660746e0SBarry Smith   PetscMPIInt    rank,size,tag = ((PetscObject)viewer)->tag;
1070638eb2ebSBarry Smith   PetscInt       message_count,flowcontrolcount;
1071660746e0SBarry Smith 
1072660746e0SBarry Smith   PetscFunctionBegin;
1073ce94432eSBarry Smith   ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)mat),&rank);CHKERRQ(ierr);
1074ce94432eSBarry Smith   ierr = MPI_Comm_size(PetscObjectComm((PetscObject)mat),&size);CHKERRQ(ierr);
1075660746e0SBarry Smith   nz   = bs2*(A->nz + B->nz);
1076660746e0SBarry Smith   rlen = mat->rmap->n;
1077660746e0SBarry Smith   if (!rank) {
1078660746e0SBarry Smith     header[0] = MAT_FILE_CLASSID;
1079660746e0SBarry Smith     header[1] = mat->rmap->N;
1080660746e0SBarry Smith     header[2] = mat->cmap->N;
108126fbe8dcSKarl Rupp 
1082ce94432eSBarry Smith     ierr = MPI_Reduce(&nz,&header[3],1,MPIU_INT,MPI_SUM,0,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
1083660746e0SBarry Smith     ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr);
1084660746e0SBarry Smith     ierr = PetscBinaryWrite(fd,header,4,PETSC_INT,PETSC_TRUE);CHKERRQ(ierr);
1085660746e0SBarry Smith     /* get largest number of rows any processor has */
1086660746e0SBarry Smith     range = mat->rmap->range;
1087660746e0SBarry Smith     for (i=1; i<size; i++) {
1088660746e0SBarry Smith       rlen = PetscMax(rlen,range[i+1] - range[i]);
1089660746e0SBarry Smith     }
1090660746e0SBarry Smith   } else {
1091ce94432eSBarry Smith     ierr = MPI_Reduce(&nz,0,1,MPIU_INT,MPI_SUM,0,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
1092660746e0SBarry Smith   }
1093660746e0SBarry Smith 
1094785e854fSJed Brown   ierr = PetscMalloc1((rlen/bs),&crow_lens);CHKERRQ(ierr);
1095660746e0SBarry Smith   /* compute lengths of each row  */
1096660746e0SBarry Smith   for (i=0; i<a->mbs; i++) {
1097660746e0SBarry Smith     crow_lens[i] = A->i[i+1] - A->i[i] + B->i[i+1] - B->i[i];
1098660746e0SBarry Smith   }
1099660746e0SBarry Smith   /* store the row lengths to the file */
1100638eb2ebSBarry Smith   ierr = PetscViewerFlowControlStart(viewer,&message_count,&flowcontrolcount);CHKERRQ(ierr);
1101660746e0SBarry Smith   if (!rank) {
1102660746e0SBarry Smith     MPI_Status status;
1103785e854fSJed Brown     ierr = PetscMalloc1(rlen,&row_lens);CHKERRQ(ierr);
1104660746e0SBarry Smith     rlen = (range[1] - range[0])/bs;
1105660746e0SBarry Smith     for (i=0; i<rlen; i++) {
1106660746e0SBarry Smith       for (j=0; j<bs; j++) {
1107660746e0SBarry Smith         row_lens[i*bs+j] = bs*crow_lens[i];
1108660746e0SBarry Smith       }
1109660746e0SBarry Smith     }
1110660746e0SBarry Smith     ierr = PetscBinaryWrite(fd,row_lens,bs*rlen,PETSC_INT,PETSC_TRUE);CHKERRQ(ierr);
1111660746e0SBarry Smith     for (i=1; i<size; i++) {
1112660746e0SBarry Smith       rlen = (range[i+1] - range[i])/bs;
1113639ff905SBarry Smith       ierr = PetscViewerFlowControlStepMaster(viewer,i,&message_count,flowcontrolcount);CHKERRQ(ierr);
1114ce94432eSBarry Smith       ierr = MPI_Recv(crow_lens,rlen,MPIU_INT,i,tag,PetscObjectComm((PetscObject)mat),&status);CHKERRQ(ierr);
1115660746e0SBarry Smith       for (k=0; k<rlen; k++) {
1116660746e0SBarry Smith         for (j=0; j<bs; j++) {
1117660746e0SBarry Smith           row_lens[k*bs+j] = bs*crow_lens[k];
1118660746e0SBarry Smith         }
1119660746e0SBarry Smith       }
1120660746e0SBarry Smith       ierr = PetscBinaryWrite(fd,row_lens,bs*rlen,PETSC_INT,PETSC_TRUE);CHKERRQ(ierr);
1121660746e0SBarry Smith     }
1122639ff905SBarry Smith     ierr = PetscViewerFlowControlEndMaster(viewer,&message_count);CHKERRQ(ierr);
1123660746e0SBarry Smith     ierr = PetscFree(row_lens);CHKERRQ(ierr);
1124660746e0SBarry Smith   } else {
1125639ff905SBarry Smith     ierr = PetscViewerFlowControlStepWorker(viewer,rank,&message_count);CHKERRQ(ierr);
1126ce94432eSBarry Smith     ierr = MPI_Send(crow_lens,mat->rmap->n/bs,MPIU_INT,0,tag,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
1127639ff905SBarry Smith     ierr = PetscViewerFlowControlEndWorker(viewer,&message_count);CHKERRQ(ierr);
1128660746e0SBarry Smith   }
1129660746e0SBarry Smith   ierr = PetscFree(crow_lens);CHKERRQ(ierr);
1130660746e0SBarry Smith 
1131660746e0SBarry Smith   /* load up the local column indices. Include for all rows not just one for each block row since process 0 does not have the
1132660746e0SBarry Smith      information needed to make it for each row from a block row. This does require more communication but still not more than
1133660746e0SBarry Smith      the communication needed for the nonzero values  */
1134660746e0SBarry Smith   nzmax = nz; /*  space a largest processor needs */
1135ce94432eSBarry Smith   ierr  = MPI_Reduce(&nz,&nzmax,1,MPIU_INT,MPI_MAX,0,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
1136785e854fSJed Brown   ierr  = PetscMalloc1(nzmax,&column_indices);CHKERRQ(ierr);
1137660746e0SBarry Smith   cnt   = 0;
1138660746e0SBarry Smith   for (i=0; i<a->mbs; i++) {
1139660746e0SBarry Smith     pcnt = cnt;
1140660746e0SBarry Smith     for (j=B->i[i]; j<B->i[i+1]; j++) {
1141660746e0SBarry Smith       if ((col = garray[B->j[j]]) > cstart) break;
1142660746e0SBarry Smith       for (l=0; l<bs; l++) {
1143660746e0SBarry Smith         column_indices[cnt++] = bs*col+l;
1144660746e0SBarry Smith       }
1145660746e0SBarry Smith     }
1146660746e0SBarry Smith     for (k=A->i[i]; k<A->i[i+1]; k++) {
1147660746e0SBarry Smith       for (l=0; l<bs; l++) {
1148660746e0SBarry Smith         column_indices[cnt++] = bs*(A->j[k] + cstart)+l;
1149660746e0SBarry Smith       }
1150660746e0SBarry Smith     }
1151660746e0SBarry Smith     for (; j<B->i[i+1]; j++) {
1152660746e0SBarry Smith       for (l=0; l<bs; l++) {
1153660746e0SBarry Smith         column_indices[cnt++] = bs*garray[B->j[j]]+l;
1154660746e0SBarry Smith       }
1155660746e0SBarry Smith     }
1156660746e0SBarry Smith     len = cnt - pcnt;
1157660746e0SBarry Smith     for (k=1; k<bs; k++) {
1158660746e0SBarry Smith       ierr = PetscMemcpy(&column_indices[cnt],&column_indices[pcnt],len*sizeof(PetscInt));CHKERRQ(ierr);
1159660746e0SBarry Smith       cnt += len;
1160660746e0SBarry Smith     }
1161660746e0SBarry Smith   }
1162660746e0SBarry Smith   if (cnt != nz) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_LIB,"Internal PETSc error: cnt = %D nz = %D",cnt,nz);
1163660746e0SBarry Smith 
1164660746e0SBarry Smith   /* store the columns to the file */
1165638eb2ebSBarry Smith   ierr = PetscViewerFlowControlStart(viewer,&message_count,&flowcontrolcount);CHKERRQ(ierr);
1166660746e0SBarry Smith   if (!rank) {
1167660746e0SBarry Smith     MPI_Status status;
1168660746e0SBarry Smith     ierr = PetscBinaryWrite(fd,column_indices,nz,PETSC_INT,PETSC_TRUE);CHKERRQ(ierr);
1169660746e0SBarry Smith     for (i=1; i<size; i++) {
1170639ff905SBarry Smith       ierr = PetscViewerFlowControlStepMaster(viewer,i,&message_count,flowcontrolcount);CHKERRQ(ierr);
1171ce94432eSBarry Smith       ierr = MPI_Recv(&cnt,1,MPIU_INT,i,tag,PetscObjectComm((PetscObject)mat),&status);CHKERRQ(ierr);
1172ce94432eSBarry Smith       ierr = MPI_Recv(column_indices,cnt,MPIU_INT,i,tag,PetscObjectComm((PetscObject)mat),&status);CHKERRQ(ierr);
1173660746e0SBarry Smith       ierr = PetscBinaryWrite(fd,column_indices,cnt,PETSC_INT,PETSC_TRUE);CHKERRQ(ierr);
1174660746e0SBarry Smith     }
1175639ff905SBarry Smith     ierr = PetscViewerFlowControlEndMaster(viewer,&message_count);CHKERRQ(ierr);
1176660746e0SBarry Smith   } else {
1177639ff905SBarry Smith     ierr = PetscViewerFlowControlStepWorker(viewer,rank,&message_count);CHKERRQ(ierr);
1178ce94432eSBarry Smith     ierr = MPI_Send(&cnt,1,MPIU_INT,0,tag,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
1179ce94432eSBarry Smith     ierr = MPI_Send(column_indices,cnt,MPIU_INT,0,tag,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
1180639ff905SBarry Smith     ierr = PetscViewerFlowControlEndWorker(viewer,&message_count);CHKERRQ(ierr);
1181660746e0SBarry Smith   }
1182660746e0SBarry Smith   ierr = PetscFree(column_indices);CHKERRQ(ierr);
1183660746e0SBarry Smith 
1184660746e0SBarry Smith   /* load up the numerical values */
1185785e854fSJed Brown   ierr = PetscMalloc1(nzmax,&column_values);CHKERRQ(ierr);
1186660746e0SBarry Smith   cnt  = 0;
1187660746e0SBarry Smith   for (i=0; i<a->mbs; i++) {
1188660746e0SBarry Smith     rlen = bs*(B->i[i+1] - B->i[i] + A->i[i+1] - A->i[i]);
1189660746e0SBarry Smith     for (j=B->i[i]; j<B->i[i+1]; j++) {
1190660746e0SBarry Smith       if (garray[B->j[j]] > cstart) break;
1191660746e0SBarry Smith       for (l=0; l<bs; l++) {
1192660746e0SBarry Smith         for (ll=0; ll<bs; ll++) {
1193660746e0SBarry Smith           column_values[cnt + l*rlen + ll] = B->a[bs2*j+l+bs*ll];
1194660746e0SBarry Smith         }
1195660746e0SBarry Smith       }
1196660746e0SBarry Smith       cnt += bs;
1197660746e0SBarry Smith     }
1198660746e0SBarry Smith     for (k=A->i[i]; k<A->i[i+1]; k++) {
1199660746e0SBarry Smith       for (l=0; l<bs; l++) {
1200660746e0SBarry Smith         for (ll=0; ll<bs; ll++) {
1201660746e0SBarry Smith           column_values[cnt + l*rlen + ll] = A->a[bs2*k+l+bs*ll];
1202660746e0SBarry Smith         }
1203660746e0SBarry Smith       }
1204660746e0SBarry Smith       cnt += bs;
1205660746e0SBarry Smith     }
1206660746e0SBarry Smith     for (; j<B->i[i+1]; j++) {
1207660746e0SBarry Smith       for (l=0; l<bs; l++) {
1208660746e0SBarry Smith         for (ll=0; ll<bs; ll++) {
1209660746e0SBarry Smith           column_values[cnt + l*rlen + ll] = B->a[bs2*j+l+bs*ll];
1210660746e0SBarry Smith         }
1211660746e0SBarry Smith       }
1212660746e0SBarry Smith       cnt += bs;
1213660746e0SBarry Smith     }
1214660746e0SBarry Smith     cnt += (bs-1)*rlen;
1215660746e0SBarry Smith   }
1216660746e0SBarry Smith   if (cnt != nz) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Internal PETSc error: cnt = %D nz = %D",cnt,nz);
1217660746e0SBarry Smith 
1218660746e0SBarry Smith   /* store the column values to the file */
1219638eb2ebSBarry Smith   ierr = PetscViewerFlowControlStart(viewer,&message_count,&flowcontrolcount);CHKERRQ(ierr);
1220660746e0SBarry Smith   if (!rank) {
1221660746e0SBarry Smith     MPI_Status status;
1222660746e0SBarry Smith     ierr = PetscBinaryWrite(fd,column_values,nz,PETSC_SCALAR,PETSC_TRUE);CHKERRQ(ierr);
1223660746e0SBarry Smith     for (i=1; i<size; i++) {
1224639ff905SBarry Smith       ierr = PetscViewerFlowControlStepMaster(viewer,i,&message_count,flowcontrolcount);CHKERRQ(ierr);
1225ce94432eSBarry Smith       ierr = MPI_Recv(&cnt,1,MPIU_INT,i,tag,PetscObjectComm((PetscObject)mat),&status);CHKERRQ(ierr);
1226ce94432eSBarry Smith       ierr = MPI_Recv(column_values,cnt,MPIU_SCALAR,i,tag,PetscObjectComm((PetscObject)mat),&status);CHKERRQ(ierr);
1227660746e0SBarry Smith       ierr = PetscBinaryWrite(fd,column_values,cnt,PETSC_SCALAR,PETSC_TRUE);CHKERRQ(ierr);
1228660746e0SBarry Smith     }
1229639ff905SBarry Smith     ierr = PetscViewerFlowControlEndMaster(viewer,&message_count);CHKERRQ(ierr);
1230660746e0SBarry Smith   } else {
1231639ff905SBarry Smith     ierr = PetscViewerFlowControlStepWorker(viewer,rank,&message_count);CHKERRQ(ierr);
1232ce94432eSBarry Smith     ierr = MPI_Send(&nz,1,MPIU_INT,0,tag,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
1233ce94432eSBarry Smith     ierr = MPI_Send(column_values,nz,MPIU_SCALAR,0,tag,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
1234639ff905SBarry Smith     ierr = PetscViewerFlowControlEndWorker(viewer,&message_count);CHKERRQ(ierr);
1235660746e0SBarry Smith   }
1236660746e0SBarry Smith   ierr = PetscFree(column_values);CHKERRQ(ierr);
1237660746e0SBarry Smith 
1238660746e0SBarry Smith   ierr = PetscViewerBinaryGetInfoPointer(viewer,&file);CHKERRQ(ierr);
1239660746e0SBarry Smith   if (file) {
1240660746e0SBarry Smith     fprintf(file,"-matload_block_size %d\n",(int)mat->rmap->bs);
1241660746e0SBarry Smith   }
1242660746e0SBarry Smith   PetscFunctionReturn(0);
1243660746e0SBarry Smith }
1244660746e0SBarry Smith 
1245660746e0SBarry Smith #undef __FUNCT__
12464a2ae208SSatish Balay #define __FUNCT__ "MatView_MPIBAIJ"
1247dfbe8321SBarry Smith PetscErrorCode MatView_MPIBAIJ(Mat mat,PetscViewer viewer)
124857b952d6SSatish Balay {
1249dfbe8321SBarry Smith   PetscErrorCode ierr;
1250ace3abfcSBarry Smith   PetscBool      iascii,isdraw,issocket,isbinary;
125157b952d6SSatish Balay 
1252d64ed03dSBarry Smith   PetscFunctionBegin;
1253251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr);
1254251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr);
1255251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERSOCKET,&issocket);CHKERRQ(ierr);
1256251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary);CHKERRQ(ierr);
1257660746e0SBarry Smith   if (iascii || isdraw || issocket) {
12587b2a1423SBarry Smith     ierr = MatView_MPIBAIJ_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr);
1259660746e0SBarry Smith   } else if (isbinary) {
1260660746e0SBarry Smith     ierr = MatView_MPIBAIJ_Binary(mat,viewer);CHKERRQ(ierr);
126157b952d6SSatish Balay   }
12623a40ed3dSBarry Smith   PetscFunctionReturn(0);
126357b952d6SSatish Balay }
126457b952d6SSatish Balay 
12654a2ae208SSatish Balay #undef __FUNCT__
12664a2ae208SSatish Balay #define __FUNCT__ "MatDestroy_MPIBAIJ"
1267dfbe8321SBarry Smith PetscErrorCode MatDestroy_MPIBAIJ(Mat mat)
126879bdfe76SSatish Balay {
126979bdfe76SSatish Balay   Mat_MPIBAIJ    *baij = (Mat_MPIBAIJ*)mat->data;
1270dfbe8321SBarry Smith   PetscErrorCode ierr;
127179bdfe76SSatish Balay 
1272d64ed03dSBarry Smith   PetscFunctionBegin;
1273aa482453SBarry Smith #if defined(PETSC_USE_LOG)
1274d0f46423SBarry Smith   PetscLogObjectState((PetscObject)mat,"Rows=%D,Cols=%D",mat->rmap->N,mat->cmap->N);
127579bdfe76SSatish Balay #endif
12768798bf22SSatish Balay   ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr);
12778798bf22SSatish Balay   ierr = MatStashDestroy_Private(&mat->bstash);CHKERRQ(ierr);
12786bf464f9SBarry Smith   ierr = MatDestroy(&baij->A);CHKERRQ(ierr);
12796bf464f9SBarry Smith   ierr = MatDestroy(&baij->B);CHKERRQ(ierr);
1280aa482453SBarry Smith #if defined(PETSC_USE_CTABLE)
12816bc0bbbfSBarry Smith   ierr = PetscTableDestroy(&baij->colmap);CHKERRQ(ierr);
128248e59246SSatish Balay #else
128305b42c5fSBarry Smith   ierr = PetscFree(baij->colmap);CHKERRQ(ierr);
128448e59246SSatish Balay #endif
128505b42c5fSBarry Smith   ierr = PetscFree(baij->garray);CHKERRQ(ierr);
12866bf464f9SBarry Smith   ierr = VecDestroy(&baij->lvec);CHKERRQ(ierr);
12876bf464f9SBarry Smith   ierr = VecScatterDestroy(&baij->Mvctx);CHKERRQ(ierr);
1288fca92195SBarry Smith   ierr = PetscFree2(baij->rowvalues,baij->rowindices);CHKERRQ(ierr);
128905b42c5fSBarry Smith   ierr = PetscFree(baij->barray);CHKERRQ(ierr);
1290fca92195SBarry Smith   ierr = PetscFree2(baij->hd,baij->ht);CHKERRQ(ierr);
1291899cda47SBarry Smith   ierr = PetscFree(baij->rangebs);CHKERRQ(ierr);
1292bf0cc555SLisandro Dalcin   ierr = PetscFree(mat->data);CHKERRQ(ierr);
1293901853e0SKris Buschelman 
1294dbd8c25aSHong Zhang   ierr = PetscObjectChangeTypeName((PetscObject)mat,0);CHKERRQ(ierr);
1295bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatStoreValues_C",NULL);CHKERRQ(ierr);
1296bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatRetrieveValues_C",NULL);CHKERRQ(ierr);
1297bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatGetDiagonalBlock_C",NULL);CHKERRQ(ierr);
1298bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPIBAIJSetPreallocation_C",NULL);CHKERRQ(ierr);
1299bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPIBAIJSetPreallocationCSR_C",NULL);CHKERRQ(ierr);
1300bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDiagonalScaleLocal_C",NULL);CHKERRQ(ierr);
1301bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatSetHashTableFactor_C",NULL);CHKERRQ(ierr);
1302bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpibaij_mpisbaij_C",NULL);CHKERRQ(ierr);
1303bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpibaij_mpibstrm_C",NULL);CHKERRQ(ierr);
13043a40ed3dSBarry Smith   PetscFunctionReturn(0);
130579bdfe76SSatish Balay }
130679bdfe76SSatish Balay 
13074a2ae208SSatish Balay #undef __FUNCT__
13084a2ae208SSatish Balay #define __FUNCT__ "MatMult_MPIBAIJ"
1309dfbe8321SBarry Smith PetscErrorCode MatMult_MPIBAIJ(Mat A,Vec xx,Vec yy)
1310cee3aa6bSSatish Balay {
1311cee3aa6bSSatish Balay   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)A->data;
1312dfbe8321SBarry Smith   PetscErrorCode ierr;
1313b24ad042SBarry Smith   PetscInt       nt;
1314cee3aa6bSSatish Balay 
1315d64ed03dSBarry Smith   PetscFunctionBegin;
1316e1311b90SBarry Smith   ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr);
1317e7e72b3dSBarry Smith   if (nt != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx");
1318e1311b90SBarry Smith   ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr);
1319e7e72b3dSBarry Smith   if (nt != A->rmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible parition of A and yy");
1320ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1321f830108cSBarry Smith   ierr = (*a->A->ops->mult)(a->A,xx,yy);CHKERRQ(ierr);
1322ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1323f830108cSBarry Smith   ierr = (*a->B->ops->multadd)(a->B,a->lvec,yy,yy);CHKERRQ(ierr);
13243a40ed3dSBarry Smith   PetscFunctionReturn(0);
1325cee3aa6bSSatish Balay }
1326cee3aa6bSSatish Balay 
13274a2ae208SSatish Balay #undef __FUNCT__
13284a2ae208SSatish Balay #define __FUNCT__ "MatMultAdd_MPIBAIJ"
1329dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPIBAIJ(Mat A,Vec xx,Vec yy,Vec zz)
1330cee3aa6bSSatish Balay {
1331cee3aa6bSSatish Balay   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)A->data;
1332dfbe8321SBarry Smith   PetscErrorCode ierr;
1333d64ed03dSBarry Smith 
1334d64ed03dSBarry Smith   PetscFunctionBegin;
1335ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1336f830108cSBarry Smith   ierr = (*a->A->ops->multadd)(a->A,xx,yy,zz);CHKERRQ(ierr);
1337ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1338f830108cSBarry Smith   ierr = (*a->B->ops->multadd)(a->B,a->lvec,zz,zz);CHKERRQ(ierr);
13393a40ed3dSBarry Smith   PetscFunctionReturn(0);
1340cee3aa6bSSatish Balay }
1341cee3aa6bSSatish Balay 
13424a2ae208SSatish Balay #undef __FUNCT__
13434a2ae208SSatish Balay #define __FUNCT__ "MatMultTranspose_MPIBAIJ"
1344dfbe8321SBarry Smith PetscErrorCode MatMultTranspose_MPIBAIJ(Mat A,Vec xx,Vec yy)
1345cee3aa6bSSatish Balay {
1346cee3aa6bSSatish Balay   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)A->data;
1347dfbe8321SBarry Smith   PetscErrorCode ierr;
1348ace3abfcSBarry Smith   PetscBool      merged;
1349cee3aa6bSSatish Balay 
1350d64ed03dSBarry Smith   PetscFunctionBegin;
1351a5ff213dSBarry Smith   ierr = VecScatterGetMerged(a->Mvctx,&merged);CHKERRQ(ierr);
1352cee3aa6bSSatish Balay   /* do nondiagonal part */
13537c922b88SBarry Smith   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr);
1354a5ff213dSBarry Smith   if (!merged) {
1355cee3aa6bSSatish Balay     /* send it on its way */
1356ca9f406cSSatish Balay     ierr = VecScatterBegin(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
1357cee3aa6bSSatish Balay     /* do local part */
13587c922b88SBarry Smith     ierr = (*a->A->ops->multtranspose)(a->A,xx,yy);CHKERRQ(ierr);
1359cee3aa6bSSatish Balay     /* receive remote parts: note this assumes the values are not actually */
1360a5ff213dSBarry Smith     /* inserted in yy until the next line */
1361ca9f406cSSatish Balay     ierr = VecScatterEnd(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
1362a5ff213dSBarry Smith   } else {
1363a5ff213dSBarry Smith     /* do local part */
1364a5ff213dSBarry Smith     ierr = (*a->A->ops->multtranspose)(a->A,xx,yy);CHKERRQ(ierr);
1365a5ff213dSBarry Smith     /* send it on its way */
1366ca9f406cSSatish Balay     ierr = VecScatterBegin(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
1367a5ff213dSBarry Smith     /* values actually were received in the Begin() but we need to call this nop */
1368ca9f406cSSatish Balay     ierr = VecScatterEnd(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
1369a5ff213dSBarry Smith   }
13703a40ed3dSBarry Smith   PetscFunctionReturn(0);
1371cee3aa6bSSatish Balay }
1372cee3aa6bSSatish Balay 
13734a2ae208SSatish Balay #undef __FUNCT__
13744a2ae208SSatish Balay #define __FUNCT__ "MatMultTransposeAdd_MPIBAIJ"
1375dfbe8321SBarry Smith PetscErrorCode MatMultTransposeAdd_MPIBAIJ(Mat A,Vec xx,Vec yy,Vec zz)
1376cee3aa6bSSatish Balay {
1377cee3aa6bSSatish Balay   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)A->data;
1378dfbe8321SBarry Smith   PetscErrorCode ierr;
1379cee3aa6bSSatish Balay 
1380d64ed03dSBarry Smith   PetscFunctionBegin;
1381cee3aa6bSSatish Balay   /* do nondiagonal part */
13827c922b88SBarry Smith   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr);
1383cee3aa6bSSatish Balay   /* send it on its way */
1384ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
1385cee3aa6bSSatish Balay   /* do local part */
13867c922b88SBarry Smith   ierr = (*a->A->ops->multtransposeadd)(a->A,xx,yy,zz);CHKERRQ(ierr);
1387cee3aa6bSSatish Balay   /* receive remote parts: note this assumes the values are not actually */
1388cee3aa6bSSatish Balay   /* inserted in yy until the next line, which is true for my implementation*/
1389cee3aa6bSSatish Balay   /* but is not perhaps always true. */
1390ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
13913a40ed3dSBarry Smith   PetscFunctionReturn(0);
1392cee3aa6bSSatish Balay }
1393cee3aa6bSSatish Balay 
1394cee3aa6bSSatish Balay /*
1395cee3aa6bSSatish Balay   This only works correctly for square matrices where the subblock A->A is the
1396cee3aa6bSSatish Balay    diagonal block
1397cee3aa6bSSatish Balay */
13984a2ae208SSatish Balay #undef __FUNCT__
13994a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonal_MPIBAIJ"
1400dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_MPIBAIJ(Mat A,Vec v)
1401cee3aa6bSSatish Balay {
1402cee3aa6bSSatish Balay   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)A->data;
1403dfbe8321SBarry Smith   PetscErrorCode ierr;
1404d64ed03dSBarry Smith 
1405d64ed03dSBarry Smith   PetscFunctionBegin;
1406e32f2f54SBarry Smith   if (A->rmap->N != A->cmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block");
14073a40ed3dSBarry Smith   ierr = MatGetDiagonal(a->A,v);CHKERRQ(ierr);
14083a40ed3dSBarry Smith   PetscFunctionReturn(0);
1409cee3aa6bSSatish Balay }
1410cee3aa6bSSatish Balay 
14114a2ae208SSatish Balay #undef __FUNCT__
14124a2ae208SSatish Balay #define __FUNCT__ "MatScale_MPIBAIJ"
1413f4df32b1SMatthew Knepley PetscErrorCode MatScale_MPIBAIJ(Mat A,PetscScalar aa)
1414cee3aa6bSSatish Balay {
1415cee3aa6bSSatish Balay   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)A->data;
1416dfbe8321SBarry Smith   PetscErrorCode ierr;
1417d64ed03dSBarry Smith 
1418d64ed03dSBarry Smith   PetscFunctionBegin;
1419f4df32b1SMatthew Knepley   ierr = MatScale(a->A,aa);CHKERRQ(ierr);
1420f4df32b1SMatthew Knepley   ierr = MatScale(a->B,aa);CHKERRQ(ierr);
14213a40ed3dSBarry Smith   PetscFunctionReturn(0);
1422cee3aa6bSSatish Balay }
1423026e39d0SSatish Balay 
14244a2ae208SSatish Balay #undef __FUNCT__
14254a2ae208SSatish Balay #define __FUNCT__ "MatGetRow_MPIBAIJ"
1426b24ad042SBarry Smith PetscErrorCode MatGetRow_MPIBAIJ(Mat matin,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v)
1427acdf5bf4SSatish Balay {
1428acdf5bf4SSatish Balay   Mat_MPIBAIJ    *mat = (Mat_MPIBAIJ*)matin->data;
142987828ca2SBarry Smith   PetscScalar    *vworkA,*vworkB,**pvA,**pvB,*v_p;
14306849ba73SBarry Smith   PetscErrorCode ierr;
1431d0f46423SBarry Smith   PetscInt       bs = matin->rmap->bs,bs2 = mat->bs2,i,*cworkA,*cworkB,**pcA,**pcB;
1432d0f46423SBarry Smith   PetscInt       nztot,nzA,nzB,lrow,brstart = matin->rmap->rstart,brend = matin->rmap->rend;
1433899cda47SBarry Smith   PetscInt       *cmap,*idx_p,cstart = mat->cstartbs;
1434acdf5bf4SSatish Balay 
1435d64ed03dSBarry Smith   PetscFunctionBegin;
1436e7e72b3dSBarry Smith   if (row < brstart || row >= brend) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local rows");
1437e32f2f54SBarry Smith   if (mat->getrowactive) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Already active");
1438acdf5bf4SSatish Balay   mat->getrowactive = PETSC_TRUE;
1439acdf5bf4SSatish Balay 
1440acdf5bf4SSatish Balay   if (!mat->rowvalues && (idx || v)) {
1441acdf5bf4SSatish Balay     /*
1442acdf5bf4SSatish Balay         allocate enough space to hold information from the longest row.
1443acdf5bf4SSatish Balay     */
1444acdf5bf4SSatish Balay     Mat_SeqBAIJ *Aa = (Mat_SeqBAIJ*)mat->A->data,*Ba = (Mat_SeqBAIJ*)mat->B->data;
1445b24ad042SBarry Smith     PetscInt    max = 1,mbs = mat->mbs,tmp;
1446bd16c2feSSatish Balay     for (i=0; i<mbs; i++) {
1447acdf5bf4SSatish Balay       tmp = Aa->i[i+1] - Aa->i[i] + Ba->i[i+1] - Ba->i[i];
144826fbe8dcSKarl Rupp       if (max < tmp) max = tmp;
1449acdf5bf4SSatish Balay     }
1450dcca6d9dSJed Brown     ierr = PetscMalloc2(max*bs2,&mat->rowvalues,max*bs2,&mat->rowindices);CHKERRQ(ierr);
1451acdf5bf4SSatish Balay   }
1452d9d09a02SSatish Balay   lrow = row - brstart;
1453acdf5bf4SSatish Balay 
1454acdf5bf4SSatish Balay   pvA = &vworkA; pcA = &cworkA; pvB = &vworkB; pcB = &cworkB;
1455acdf5bf4SSatish Balay   if (!v)   {pvA = 0; pvB = 0;}
1456acdf5bf4SSatish Balay   if (!idx) {pcA = 0; if (!v) pcB = 0;}
1457f830108cSBarry Smith   ierr  = (*mat->A->ops->getrow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr);
1458f830108cSBarry Smith   ierr  = (*mat->B->ops->getrow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr);
1459acdf5bf4SSatish Balay   nztot = nzA + nzB;
1460acdf5bf4SSatish Balay 
1461acdf5bf4SSatish Balay   cmap = mat->garray;
1462acdf5bf4SSatish Balay   if (v  || idx) {
1463acdf5bf4SSatish Balay     if (nztot) {
1464acdf5bf4SSatish Balay       /* Sort by increasing column numbers, assuming A and B already sorted */
1465b24ad042SBarry Smith       PetscInt imark = -1;
1466acdf5bf4SSatish Balay       if (v) {
1467acdf5bf4SSatish Balay         *v = v_p = mat->rowvalues;
1468acdf5bf4SSatish Balay         for (i=0; i<nzB; i++) {
1469d9d09a02SSatish Balay           if (cmap[cworkB[i]/bs] < cstart) v_p[i] = vworkB[i];
1470acdf5bf4SSatish Balay           else break;
1471acdf5bf4SSatish Balay         }
1472acdf5bf4SSatish Balay         imark = i;
1473acdf5bf4SSatish Balay         for (i=0; i<nzA; i++)     v_p[imark+i] = vworkA[i];
1474acdf5bf4SSatish Balay         for (i=imark; i<nzB; i++) v_p[nzA+i]   = vworkB[i];
1475acdf5bf4SSatish Balay       }
1476acdf5bf4SSatish Balay       if (idx) {
1477acdf5bf4SSatish Balay         *idx = idx_p = mat->rowindices;
1478acdf5bf4SSatish Balay         if (imark > -1) {
1479acdf5bf4SSatish Balay           for (i=0; i<imark; i++) {
1480bd16c2feSSatish Balay             idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs;
1481acdf5bf4SSatish Balay           }
1482acdf5bf4SSatish Balay         } else {
1483acdf5bf4SSatish Balay           for (i=0; i<nzB; i++) {
148426fbe8dcSKarl Rupp             if (cmap[cworkB[i]/bs] < cstart) idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs;
1485acdf5bf4SSatish Balay             else break;
1486acdf5bf4SSatish Balay           }
1487acdf5bf4SSatish Balay           imark = i;
1488acdf5bf4SSatish Balay         }
1489d9d09a02SSatish Balay         for (i=0; i<nzA; i++)     idx_p[imark+i] = cstart*bs + cworkA[i];
1490d9d09a02SSatish Balay         for (i=imark; i<nzB; i++) idx_p[nzA+i]   = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ;
1491acdf5bf4SSatish Balay       }
1492d64ed03dSBarry Smith     } else {
1493d212a18eSSatish Balay       if (idx) *idx = 0;
1494d212a18eSSatish Balay       if (v)   *v   = 0;
1495d212a18eSSatish Balay     }
1496acdf5bf4SSatish Balay   }
1497acdf5bf4SSatish Balay   *nz  = nztot;
1498f830108cSBarry Smith   ierr = (*mat->A->ops->restorerow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr);
1499f830108cSBarry Smith   ierr = (*mat->B->ops->restorerow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr);
15003a40ed3dSBarry Smith   PetscFunctionReturn(0);
1501acdf5bf4SSatish Balay }
1502acdf5bf4SSatish Balay 
15034a2ae208SSatish Balay #undef __FUNCT__
15044a2ae208SSatish Balay #define __FUNCT__ "MatRestoreRow_MPIBAIJ"
1505b24ad042SBarry Smith PetscErrorCode MatRestoreRow_MPIBAIJ(Mat mat,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v)
1506acdf5bf4SSatish Balay {
1507acdf5bf4SSatish Balay   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data;
1508d64ed03dSBarry Smith 
1509d64ed03dSBarry Smith   PetscFunctionBegin;
1510e7e72b3dSBarry Smith   if (!baij->getrowactive) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"MatGetRow not called");
1511acdf5bf4SSatish Balay   baij->getrowactive = PETSC_FALSE;
15123a40ed3dSBarry Smith   PetscFunctionReturn(0);
1513acdf5bf4SSatish Balay }
1514acdf5bf4SSatish Balay 
15154a2ae208SSatish Balay #undef __FUNCT__
15164a2ae208SSatish Balay #define __FUNCT__ "MatZeroEntries_MPIBAIJ"
1517dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_MPIBAIJ(Mat A)
151858667388SSatish Balay {
151958667388SSatish Balay   Mat_MPIBAIJ    *l = (Mat_MPIBAIJ*)A->data;
1520dfbe8321SBarry Smith   PetscErrorCode ierr;
1521d64ed03dSBarry Smith 
1522d64ed03dSBarry Smith   PetscFunctionBegin;
152358667388SSatish Balay   ierr = MatZeroEntries(l->A);CHKERRQ(ierr);
152458667388SSatish Balay   ierr = MatZeroEntries(l->B);CHKERRQ(ierr);
15253a40ed3dSBarry Smith   PetscFunctionReturn(0);
152658667388SSatish Balay }
15270ac07820SSatish Balay 
15284a2ae208SSatish Balay #undef __FUNCT__
15294a2ae208SSatish Balay #define __FUNCT__ "MatGetInfo_MPIBAIJ"
1530dfbe8321SBarry Smith PetscErrorCode MatGetInfo_MPIBAIJ(Mat matin,MatInfoType flag,MatInfo *info)
15310ac07820SSatish Balay {
15324e220ebcSLois Curfman McInnes   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)matin->data;
15334e220ebcSLois Curfman McInnes   Mat            A  = a->A,B = a->B;
1534dfbe8321SBarry Smith   PetscErrorCode ierr;
1535329f5518SBarry Smith   PetscReal      isend[5],irecv[5];
15360ac07820SSatish Balay 
1537d64ed03dSBarry Smith   PetscFunctionBegin;
1538d0f46423SBarry Smith   info->block_size = (PetscReal)matin->rmap->bs;
153926fbe8dcSKarl Rupp 
15404e220ebcSLois Curfman McInnes   ierr = MatGetInfo(A,MAT_LOCAL,info);CHKERRQ(ierr);
154126fbe8dcSKarl Rupp 
15420e4b21beSBarry Smith   isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded;
1543de87f314SBarry Smith   isend[3] = info->memory;  isend[4] = info->mallocs;
154426fbe8dcSKarl Rupp 
15454e220ebcSLois Curfman McInnes   ierr = MatGetInfo(B,MAT_LOCAL,info);CHKERRQ(ierr);
154626fbe8dcSKarl Rupp 
15470e4b21beSBarry Smith   isend[0] += info->nz_used; isend[1] += info->nz_allocated; isend[2] += info->nz_unneeded;
1548de87f314SBarry Smith   isend[3] += info->memory;  isend[4] += info->mallocs;
154926fbe8dcSKarl Rupp 
15500ac07820SSatish Balay   if (flag == MAT_LOCAL) {
15514e220ebcSLois Curfman McInnes     info->nz_used      = isend[0];
15524e220ebcSLois Curfman McInnes     info->nz_allocated = isend[1];
15534e220ebcSLois Curfman McInnes     info->nz_unneeded  = isend[2];
15544e220ebcSLois Curfman McInnes     info->memory       = isend[3];
15554e220ebcSLois Curfman McInnes     info->mallocs      = isend[4];
15560ac07820SSatish Balay   } else if (flag == MAT_GLOBAL_MAX) {
1557ce94432eSBarry Smith     ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPIU_MAX,PetscObjectComm((PetscObject)matin));CHKERRQ(ierr);
155826fbe8dcSKarl Rupp 
15594e220ebcSLois Curfman McInnes     info->nz_used      = irecv[0];
15604e220ebcSLois Curfman McInnes     info->nz_allocated = irecv[1];
15614e220ebcSLois Curfman McInnes     info->nz_unneeded  = irecv[2];
15624e220ebcSLois Curfman McInnes     info->memory       = irecv[3];
15634e220ebcSLois Curfman McInnes     info->mallocs      = irecv[4];
15640ac07820SSatish Balay   } else if (flag == MAT_GLOBAL_SUM) {
1565ce94432eSBarry Smith     ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)matin));CHKERRQ(ierr);
156626fbe8dcSKarl Rupp 
15674e220ebcSLois Curfman McInnes     info->nz_used      = irecv[0];
15684e220ebcSLois Curfman McInnes     info->nz_allocated = irecv[1];
15694e220ebcSLois Curfman McInnes     info->nz_unneeded  = irecv[2];
15704e220ebcSLois Curfman McInnes     info->memory       = irecv[3];
15714e220ebcSLois Curfman McInnes     info->mallocs      = irecv[4];
1572ce94432eSBarry Smith   } else SETERRQ1(PetscObjectComm((PetscObject)matin),PETSC_ERR_ARG_WRONG,"Unknown MatInfoType argument %d",(int)flag);
15734e220ebcSLois Curfman McInnes   info->fill_ratio_given  = 0; /* no parallel LU/ILU/Cholesky */
15744e220ebcSLois Curfman McInnes   info->fill_ratio_needed = 0;
15754e220ebcSLois Curfman McInnes   info->factor_mallocs    = 0;
15763a40ed3dSBarry Smith   PetscFunctionReturn(0);
15770ac07820SSatish Balay }
15780ac07820SSatish Balay 
15794a2ae208SSatish Balay #undef __FUNCT__
15804a2ae208SSatish Balay #define __FUNCT__ "MatSetOption_MPIBAIJ"
1581ace3abfcSBarry Smith PetscErrorCode MatSetOption_MPIBAIJ(Mat A,MatOption op,PetscBool flg)
158258667388SSatish Balay {
158358667388SSatish Balay   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)A->data;
1584dfbe8321SBarry Smith   PetscErrorCode ierr;
158558667388SSatish Balay 
1586d64ed03dSBarry Smith   PetscFunctionBegin;
158712c028f9SKris Buschelman   switch (op) {
1588512a5fc5SBarry Smith   case MAT_NEW_NONZERO_LOCATIONS:
158912c028f9SKris Buschelman   case MAT_NEW_NONZERO_ALLOCATION_ERR:
159028b2fa4aSMatthew Knepley   case MAT_UNUSED_NONZERO_LOCATION_ERR:
1591a9817697SBarry Smith   case MAT_KEEP_NONZERO_PATTERN:
159212c028f9SKris Buschelman   case MAT_NEW_NONZERO_LOCATION_ERR:
15934e0d8c25SBarry Smith     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
15944e0d8c25SBarry Smith     ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr);
159512c028f9SKris Buschelman     break;
159612c028f9SKris Buschelman   case MAT_ROW_ORIENTED:
15974e0d8c25SBarry Smith     a->roworiented = flg;
159826fbe8dcSKarl Rupp 
15994e0d8c25SBarry Smith     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
16004e0d8c25SBarry Smith     ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr);
160112c028f9SKris Buschelman     break;
16024e0d8c25SBarry Smith   case MAT_NEW_DIAGONALS:
1603290bbb0aSBarry Smith     ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr);
160412c028f9SKris Buschelman     break;
160512c028f9SKris Buschelman   case MAT_IGNORE_OFF_PROC_ENTRIES:
16064e0d8c25SBarry Smith     a->donotstash = flg;
160712c028f9SKris Buschelman     break;
160812c028f9SKris Buschelman   case MAT_USE_HASH_TABLE:
16094e0d8c25SBarry Smith     a->ht_flag = flg;
161012c028f9SKris Buschelman     break;
161177e54ba9SKris Buschelman   case MAT_SYMMETRIC:
161277e54ba9SKris Buschelman   case MAT_STRUCTURALLY_SYMMETRIC:
16132188ac68SBarry Smith   case MAT_HERMITIAN:
16142188ac68SBarry Smith   case MAT_SYMMETRY_ETERNAL:
16154e0d8c25SBarry Smith     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
161677e54ba9SKris Buschelman     break;
161712c028f9SKris Buschelman   default:
1618ce94432eSBarry Smith     SETERRQ1(PetscObjectComm((PetscObject)A),PETSC_ERR_SUP,"unknown option %d",op);
1619d64ed03dSBarry Smith   }
16203a40ed3dSBarry Smith   PetscFunctionReturn(0);
162158667388SSatish Balay }
162258667388SSatish Balay 
16234a2ae208SSatish Balay #undef __FUNCT__
16246a719282SBarry Smith #define __FUNCT__ "MatTranspose_MPIBAIJ"
1625fc4dec0aSBarry Smith PetscErrorCode MatTranspose_MPIBAIJ(Mat A,MatReuse reuse,Mat *matout)
16260ac07820SSatish Balay {
16270ac07820SSatish Balay   Mat_MPIBAIJ    *baij = (Mat_MPIBAIJ*)A->data;
16280ac07820SSatish Balay   Mat_SeqBAIJ    *Aloc;
16290ac07820SSatish Balay   Mat            B;
1630dfbe8321SBarry Smith   PetscErrorCode ierr;
1631d0f46423SBarry Smith   PetscInt       M =A->rmap->N,N=A->cmap->N,*ai,*aj,i,*rvals,j,k,col;
1632d0f46423SBarry Smith   PetscInt       bs=A->rmap->bs,mbs=baij->mbs;
16333eda8832SBarry Smith   MatScalar      *a;
16340ac07820SSatish Balay 
1635d64ed03dSBarry Smith   PetscFunctionBegin;
1636ce94432eSBarry Smith   if (reuse == MAT_REUSE_MATRIX && A == *matout && M != N) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ARG_SIZ,"Square matrix only for in-place");
1637fc4dec0aSBarry Smith   if (reuse == MAT_INITIAL_MATRIX || *matout == A) {
1638ce94432eSBarry Smith     ierr = MatCreate(PetscObjectComm((PetscObject)A),&B);CHKERRQ(ierr);
1639d0f46423SBarry Smith     ierr = MatSetSizes(B,A->cmap->n,A->rmap->n,N,M);CHKERRQ(ierr);
16407adad957SLisandro Dalcin     ierr = MatSetType(B,((PetscObject)A)->type_name);CHKERRQ(ierr);
16412e72b8d9SBarry Smith     /* Do not know preallocation information, but must set block size */
16420298fd71SBarry Smith     ierr = MatMPIBAIJSetPreallocation(B,A->rmap->bs,PETSC_DECIDE,NULL,PETSC_DECIDE,NULL);CHKERRQ(ierr);
1643fc4dec0aSBarry Smith   } else {
1644fc4dec0aSBarry Smith     B = *matout;
1645fc4dec0aSBarry Smith   }
16460ac07820SSatish Balay 
16470ac07820SSatish Balay   /* copy over the A part */
16480ac07820SSatish Balay   Aloc = (Mat_SeqBAIJ*)baij->A->data;
16490ac07820SSatish Balay   ai   = Aloc->i; aj = Aloc->j; a = Aloc->a;
1650785e854fSJed Brown   ierr = PetscMalloc1(bs,&rvals);CHKERRQ(ierr);
16510ac07820SSatish Balay 
16520ac07820SSatish Balay   for (i=0; i<mbs; i++) {
1653899cda47SBarry Smith     rvals[0] = bs*(baij->rstartbs + i);
165426fbe8dcSKarl Rupp     for (j=1; j<bs; j++) rvals[j] = rvals[j-1] + 1;
16550ac07820SSatish Balay     for (j=ai[i]; j<ai[i+1]; j++) {
1656899cda47SBarry Smith       col = (baij->cstartbs+aj[j])*bs;
16570ac07820SSatish Balay       for (k=0; k<bs; k++) {
165897e5c40aSBarry Smith         ierr = MatSetValues_MPIBAIJ(B,1,&col,bs,rvals,a,INSERT_VALUES);CHKERRQ(ierr);
165926fbe8dcSKarl Rupp 
16600ac07820SSatish Balay         col++; a += bs;
16610ac07820SSatish Balay       }
16620ac07820SSatish Balay     }
16630ac07820SSatish Balay   }
16640ac07820SSatish Balay   /* copy over the B part */
16650ac07820SSatish Balay   Aloc = (Mat_SeqBAIJ*)baij->B->data;
16660ac07820SSatish Balay   ai   = Aloc->i; aj = Aloc->j; a = Aloc->a;
16670ac07820SSatish Balay   for (i=0; i<mbs; i++) {
1668899cda47SBarry Smith     rvals[0] = bs*(baij->rstartbs + i);
166926fbe8dcSKarl Rupp     for (j=1; j<bs; j++) rvals[j] = rvals[j-1] + 1;
16700ac07820SSatish Balay     for (j=ai[i]; j<ai[i+1]; j++) {
16710ac07820SSatish Balay       col = baij->garray[aj[j]]*bs;
16720ac07820SSatish Balay       for (k=0; k<bs; k++) {
167397e5c40aSBarry Smith         ierr = MatSetValues_MPIBAIJ(B,1,&col,bs,rvals,a,INSERT_VALUES);CHKERRQ(ierr);
167426fbe8dcSKarl Rupp         col++;
167526fbe8dcSKarl Rupp         a += bs;
16760ac07820SSatish Balay       }
16770ac07820SSatish Balay     }
16780ac07820SSatish Balay   }
1679606d414cSSatish Balay   ierr = PetscFree(rvals);CHKERRQ(ierr);
16800ac07820SSatish Balay   ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
16810ac07820SSatish Balay   ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
16820ac07820SSatish Balay 
168326fbe8dcSKarl Rupp   if (reuse == MAT_INITIAL_MATRIX || *matout != A) *matout = B;
168426fbe8dcSKarl Rupp   else {
1685eb6b5d47SBarry Smith     ierr = MatHeaderMerge(A,B);CHKERRQ(ierr);
16860ac07820SSatish Balay   }
16873a40ed3dSBarry Smith   PetscFunctionReturn(0);
16880ac07820SSatish Balay }
16890e95ebc0SSatish Balay 
16904a2ae208SSatish Balay #undef __FUNCT__
16914a2ae208SSatish Balay #define __FUNCT__ "MatDiagonalScale_MPIBAIJ"
1692dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_MPIBAIJ(Mat mat,Vec ll,Vec rr)
16930e95ebc0SSatish Balay {
169436c4a09eSSatish Balay   Mat_MPIBAIJ    *baij = (Mat_MPIBAIJ*)mat->data;
169536c4a09eSSatish Balay   Mat            a     = baij->A,b = baij->B;
1696dfbe8321SBarry Smith   PetscErrorCode ierr;
1697b24ad042SBarry Smith   PetscInt       s1,s2,s3;
16980e95ebc0SSatish Balay 
1699d64ed03dSBarry Smith   PetscFunctionBegin;
170036c4a09eSSatish Balay   ierr = MatGetLocalSize(mat,&s2,&s3);CHKERRQ(ierr);
170136c4a09eSSatish Balay   if (rr) {
170236c4a09eSSatish Balay     ierr = VecGetLocalSize(rr,&s1);CHKERRQ(ierr);
1703e32f2f54SBarry Smith     if (s1!=s3) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"right vector non-conforming local size");
170436c4a09eSSatish Balay     /* Overlap communication with computation. */
1705ca9f406cSSatish Balay     ierr = VecScatterBegin(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
170636c4a09eSSatish Balay   }
17070e95ebc0SSatish Balay   if (ll) {
17080e95ebc0SSatish Balay     ierr = VecGetLocalSize(ll,&s1);CHKERRQ(ierr);
1709e32f2f54SBarry Smith     if (s1!=s2) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"left vector non-conforming local size");
17100298fd71SBarry Smith     ierr = (*b->ops->diagonalscale)(b,ll,NULL);CHKERRQ(ierr);
17110e95ebc0SSatish Balay   }
171236c4a09eSSatish Balay   /* scale  the diagonal block */
171336c4a09eSSatish Balay   ierr = (*a->ops->diagonalscale)(a,ll,rr);CHKERRQ(ierr);
171436c4a09eSSatish Balay 
171536c4a09eSSatish Balay   if (rr) {
171636c4a09eSSatish Balay     /* Do a scatter end and then right scale the off-diagonal block */
1717ca9f406cSSatish Balay     ierr = VecScatterEnd(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
17180298fd71SBarry Smith     ierr = (*b->ops->diagonalscale)(b,NULL,baij->lvec);CHKERRQ(ierr);
171936c4a09eSSatish Balay   }
17203a40ed3dSBarry Smith   PetscFunctionReturn(0);
17210e95ebc0SSatish Balay }
17220e95ebc0SSatish Balay 
17234a2ae208SSatish Balay #undef __FUNCT__
17244a2ae208SSatish Balay #define __FUNCT__ "MatZeroRows_MPIBAIJ"
17252b40b63fSBarry Smith PetscErrorCode MatZeroRows_MPIBAIJ(Mat A,PetscInt N,const PetscInt rows[],PetscScalar diag,Vec x,Vec b)
17260ac07820SSatish Balay {
17270ac07820SSatish Balay   Mat_MPIBAIJ   *l      = (Mat_MPIBAIJ *) A->data;
172865a92638SMatthew G. Knepley   PetscInt      *owners = A->rmap->range;
172965a92638SMatthew G. Knepley   PetscInt       n      = A->rmap->n;
173065a92638SMatthew G. Knepley   PetscSF        sf;
173165a92638SMatthew G. Knepley   PetscInt      *lrows;
173265a92638SMatthew G. Knepley   PetscSFNode   *rrows;
173369ea2d38SJed Brown   PetscInt       r, p = 0, len = 0;
17346849ba73SBarry Smith   PetscErrorCode ierr;
17350ac07820SSatish Balay 
1736d64ed03dSBarry Smith   PetscFunctionBegin;
173765a92638SMatthew G. Knepley   /* Create SF where leaves are input rows and roots are owned rows */
1738785e854fSJed Brown   ierr = PetscMalloc1(n, &lrows);CHKERRQ(ierr);
173965a92638SMatthew G. Knepley   for (r = 0; r < n; ++r) lrows[r] = -1;
1740a34163a4SJed Brown   if (!A->nooffproczerorows) {ierr = PetscMalloc1(N, &rrows);CHKERRQ(ierr);}
174165a92638SMatthew G. Knepley   for (r = 0; r < N; ++r) {
174265a92638SMatthew G. Knepley     const PetscInt idx   = rows[r];
174369ea2d38SJed Brown     if (idx < 0 || A->rmap->N <= idx) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row %D out of range [0,%D)",idx,A->rmap->N);
174469ea2d38SJed Brown     if (idx < owners[p] || owners[p+1] <= idx) { /* short-circuit the search if the last p owns this row too */
174569ea2d38SJed Brown       ierr = PetscLayoutFindOwner(A->rmap,idx,&p);CHKERRQ(ierr);
174669ea2d38SJed Brown     }
1747a34163a4SJed Brown     if (A->nooffproczerorows) {
1748a34163a4SJed Brown       if (p != l->rank) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"MAT_NO_OFF_PROC_ZERO_ROWS set, but row %D is not owned by rank %d",idx,l->rank);
1749a34163a4SJed Brown       lrows[len++] = idx - owners[p];
1750a34163a4SJed Brown     } else {
175165a92638SMatthew G. Knepley       rrows[r].rank = p;
175265a92638SMatthew G. Knepley       rrows[r].index = rows[r] - owners[p];
17530ac07820SSatish Balay     }
1754a34163a4SJed Brown   }
1755a34163a4SJed Brown   if (!A->nooffproczerorows) {
175665a92638SMatthew G. Knepley     ierr = PetscSFCreate(PetscObjectComm((PetscObject) A), &sf);CHKERRQ(ierr);
175765a92638SMatthew G. Knepley     ierr = PetscSFSetGraph(sf, n, N, NULL, PETSC_OWN_POINTER, rrows, PETSC_OWN_POINTER);CHKERRQ(ierr);
175865a92638SMatthew G. Knepley     /* Collect flags for rows to be zeroed */
175965a92638SMatthew G. Knepley     ierr = PetscSFReduceBegin(sf, MPIU_INT, (PetscInt *) rows, lrows, MPI_LOR);CHKERRQ(ierr);
176065a92638SMatthew G. Knepley     ierr = PetscSFReduceEnd(sf, MPIU_INT, (PetscInt *) rows, lrows, MPI_LOR);CHKERRQ(ierr);
176165a92638SMatthew G. Knepley     ierr = PetscSFDestroy(&sf);CHKERRQ(ierr);
176265a92638SMatthew G. Knepley     /* Compress and put in row numbers */
176365a92638SMatthew G. Knepley     for (r = 0; r < n; ++r) if (lrows[r] >= 0) lrows[len++] = r;
1764a34163a4SJed Brown   }
176597b48c8fSBarry Smith   /* fix right hand side if needed */
176697b48c8fSBarry Smith   if (x && b) {
176765a92638SMatthew G. Knepley     const PetscScalar *xx;
176865a92638SMatthew G. Knepley     PetscScalar       *bb;
176965a92638SMatthew G. Knepley 
177097b48c8fSBarry Smith     ierr = VecGetArrayRead(x,&xx);CHKERRQ(ierr);
177197b48c8fSBarry Smith     ierr = VecGetArray(b,&bb);CHKERRQ(ierr);
177265a92638SMatthew G. Knepley     for (r = 0; r < len; ++r) bb[lrows[r]] = diag*xx[lrows[r]];
177397b48c8fSBarry Smith     ierr = VecRestoreArrayRead(x,&xx);CHKERRQ(ierr);
177497b48c8fSBarry Smith     ierr = VecRestoreArray(b,&bb);CHKERRQ(ierr);
177597b48c8fSBarry Smith   }
177697b48c8fSBarry Smith 
17770ac07820SSatish Balay   /* actually zap the local rows */
177872dacd9aSBarry Smith   /*
177972dacd9aSBarry Smith         Zero the required rows. If the "diagonal block" of the matrix
1780a8c7a070SBarry Smith      is square and the user wishes to set the diagonal we use separate
178172dacd9aSBarry Smith      code so that MatSetValues() is not called for each diagonal allocating
178272dacd9aSBarry Smith      new memory, thus calling lots of mallocs and slowing things down.
178372dacd9aSBarry Smith 
178472dacd9aSBarry Smith   */
17859c957beeSSatish Balay   /* must zero l->B before l->A because the (diag) case below may put values into l->B*/
1786a34163a4SJed Brown   ierr = MatZeroRows_SeqBAIJ(l->B,len,lrows,0.0,NULL,NULL);CHKERRQ(ierr);
1787d0f46423SBarry Smith   if ((diag != 0.0) && (l->A->rmap->N == l->A->cmap->N)) {
1788a34163a4SJed Brown     ierr = MatZeroRows_SeqBAIJ(l->A,len,lrows,diag,NULL,NULL);CHKERRQ(ierr);
1789f4df32b1SMatthew Knepley   } else if (diag != 0.0) {
179065a92638SMatthew G. Knepley     ierr = MatZeroRows_SeqBAIJ(l->A,len,lrows,0.0,0,0);CHKERRQ(ierr);
1791e7e72b3dSBarry Smith     if (((Mat_SeqBAIJ*)l->A->data)->nonew) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"MatZeroRows() on rectangular matrices cannot be used with the Mat options \n\
1792512a5fc5SBarry Smith        MAT_NEW_NONZERO_LOCATIONS,MAT_NEW_NONZERO_LOCATION_ERR,MAT_NEW_NONZERO_ALLOCATION_ERR");
179365a92638SMatthew G. Knepley     for (r = 0; r < len; ++r) {
179465a92638SMatthew G. Knepley       const PetscInt row = lrows[r] + A->rmap->rstart;
1795f4df32b1SMatthew Knepley       ierr = MatSetValues(A,1,&row,1,&row,&diag,INSERT_VALUES);CHKERRQ(ierr);
1796a07cd24cSSatish Balay     }
1797a07cd24cSSatish Balay     ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
1798a07cd24cSSatish Balay     ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
17999c957beeSSatish Balay   } else {
1800a34163a4SJed Brown     ierr = MatZeroRows_SeqBAIJ(l->A,len,lrows,0.0,NULL,NULL);CHKERRQ(ierr);
1801a07cd24cSSatish Balay   }
1802606d414cSSatish Balay   ierr = PetscFree(lrows);CHKERRQ(ierr);
18034f9cfa9eSBarry Smith 
18044f9cfa9eSBarry Smith   /* only change matrix nonzero state if pattern was allowed to be changed */
18054f9cfa9eSBarry Smith   if (!((Mat_SeqBAIJ*)(l->A->data))->keepnonzeropattern) {
1806e56f5c9eSBarry Smith     PetscObjectState state = l->A->nonzerostate + l->B->nonzerostate;
180709e82e2bSBarry Smith     ierr = MPI_Allreduce(&state,&A->nonzerostate,1,MPIU_INT64,MPI_SUM,PetscObjectComm((PetscObject)A));CHKERRQ(ierr);
1808e56f5c9eSBarry Smith   }
18093a40ed3dSBarry Smith   PetscFunctionReturn(0);
18100ac07820SSatish Balay }
181172dacd9aSBarry Smith 
18124a2ae208SSatish Balay #undef __FUNCT__
18136f0a72daSMatthew G. Knepley #define __FUNCT__ "MatZeroRowsColumns_MPIBAIJ"
18146f0a72daSMatthew G. Knepley PetscErrorCode MatZeroRowsColumns_MPIBAIJ(Mat A,PetscInt N,const PetscInt rows[],PetscScalar diag,Vec x,Vec b)
18156f0a72daSMatthew G. Knepley {
18166f0a72daSMatthew G. Knepley   Mat_MPIBAIJ       *l = (Mat_MPIBAIJ*)A->data;
18176f0a72daSMatthew G. Knepley   PetscErrorCode    ierr;
18185ba17502SJed Brown   PetscMPIInt       n = A->rmap->n;
1819fbb64d0eSMatthew G. Knepley   PetscInt          i,j,k,r,p = 0,len = 0,row,col,count;
18206f0a72daSMatthew G. Knepley   PetscInt          *lrows,*owners = A->rmap->range;
18216f0a72daSMatthew G. Knepley   PetscSFNode       *rrows;
18226f0a72daSMatthew G. Knepley   PetscSF           sf;
18236f0a72daSMatthew G. Knepley   const PetscScalar *xx;
18246f0a72daSMatthew G. Knepley   PetscScalar       *bb,*mask;
18256f0a72daSMatthew G. Knepley   Vec               xmask,lmask;
18266f0a72daSMatthew G. Knepley   Mat_SeqBAIJ       *baij = (Mat_SeqBAIJ*)l->B->data;
18276f0a72daSMatthew G. Knepley   PetscInt           bs = A->rmap->bs, bs2 = baij->bs2;
18286f0a72daSMatthew G. Knepley   PetscScalar       *aa;
18296f0a72daSMatthew G. Knepley 
18306f0a72daSMatthew G. Knepley   PetscFunctionBegin;
18316f0a72daSMatthew G. Knepley   /* Create SF where leaves are input rows and roots are owned rows */
18326f0a72daSMatthew G. Knepley   ierr = PetscMalloc1(n, &lrows);CHKERRQ(ierr);
18336f0a72daSMatthew G. Knepley   for (r = 0; r < n; ++r) lrows[r] = -1;
18346f0a72daSMatthew G. Knepley   ierr = PetscMalloc1(N, &rrows);CHKERRQ(ierr);
18356f0a72daSMatthew G. Knepley   for (r = 0; r < N; ++r) {
18366f0a72daSMatthew G. Knepley     const PetscInt idx   = rows[r];
18375ba17502SJed Brown     if (idx < 0 || A->rmap->N <= idx) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row %D out of range [0,%D)",idx,A->rmap->N);
18385ba17502SJed Brown     if (idx < owners[p] || owners[p+1] <= idx) { /* short-circuit the search if the last p owns this row too */
18395ba17502SJed Brown       ierr = PetscLayoutFindOwner(A->rmap,idx,&p);CHKERRQ(ierr);
18405ba17502SJed Brown     }
18416f0a72daSMatthew G. Knepley     rrows[r].rank  = p;
18426f0a72daSMatthew G. Knepley     rrows[r].index = rows[r] - owners[p];
18436f0a72daSMatthew G. Knepley   }
18446f0a72daSMatthew G. Knepley   ierr = PetscSFCreate(PetscObjectComm((PetscObject) A), &sf);CHKERRQ(ierr);
18456f0a72daSMatthew G. Knepley   ierr = PetscSFSetGraph(sf, n, N, NULL, PETSC_OWN_POINTER, rrows, PETSC_OWN_POINTER);CHKERRQ(ierr);
18466f0a72daSMatthew G. Knepley   /* Collect flags for rows to be zeroed */
18476f0a72daSMatthew G. Knepley   ierr = PetscSFReduceBegin(sf, MPIU_INT, (PetscInt *) rows, lrows, MPI_LOR);CHKERRQ(ierr);
18486f0a72daSMatthew G. Knepley   ierr = PetscSFReduceEnd(sf, MPIU_INT, (PetscInt *) rows, lrows, MPI_LOR);CHKERRQ(ierr);
18496f0a72daSMatthew G. Knepley   ierr = PetscSFDestroy(&sf);CHKERRQ(ierr);
18506f0a72daSMatthew G. Knepley   /* Compress and put in row numbers */
18516f0a72daSMatthew G. Knepley   for (r = 0; r < n; ++r) if (lrows[r] >= 0) lrows[len++] = r;
18526f0a72daSMatthew G. Knepley   /* zero diagonal part of matrix */
18536f0a72daSMatthew G. Knepley   ierr = MatZeroRowsColumns(l->A,len,lrows,diag,x,b);CHKERRQ(ierr);
18546f0a72daSMatthew G. Knepley   /* handle off diagonal part of matrix */
18556f0a72daSMatthew G. Knepley   ierr = MatGetVecs(A,&xmask,NULL);CHKERRQ(ierr);
18566f0a72daSMatthew G. Knepley   ierr = VecDuplicate(l->lvec,&lmask);CHKERRQ(ierr);
18576f0a72daSMatthew G. Knepley   ierr = VecGetArray(xmask,&bb);CHKERRQ(ierr);
18586f0a72daSMatthew G. Knepley   for (i=0; i<len; i++) bb[lrows[i]] = 1;
18596f0a72daSMatthew G. Knepley   ierr = VecRestoreArray(xmask,&bb);CHKERRQ(ierr);
18606f0a72daSMatthew G. Knepley   ierr = VecScatterBegin(l->Mvctx,xmask,lmask,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
18616f0a72daSMatthew G. Knepley   ierr = VecScatterEnd(l->Mvctx,xmask,lmask,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
18626f0a72daSMatthew G. Knepley   ierr = VecDestroy(&xmask);CHKERRQ(ierr);
18636f0a72daSMatthew G. Knepley   if (x) {
18646f0a72daSMatthew G. Knepley     ierr = VecScatterBegin(l->Mvctx,x,l->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
18656f0a72daSMatthew G. Knepley     ierr = VecScatterEnd(l->Mvctx,x,l->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
18666f0a72daSMatthew G. Knepley     ierr = VecGetArrayRead(l->lvec,&xx);CHKERRQ(ierr);
18676f0a72daSMatthew G. Knepley     ierr = VecGetArray(b,&bb);CHKERRQ(ierr);
18686f0a72daSMatthew G. Knepley   }
18696f0a72daSMatthew G. Knepley   ierr = VecGetArray(lmask,&mask);CHKERRQ(ierr);
18706f0a72daSMatthew G. Knepley   /* remove zeroed rows of off diagonal matrix */
18716f0a72daSMatthew G. Knepley   for (i = 0; i < len; ++i) {
18726f0a72daSMatthew G. Knepley     row   = lrows[i];
18736f0a72daSMatthew G. Knepley     count = (baij->i[row/bs +1] - baij->i[row/bs])*bs;
18746f0a72daSMatthew G. Knepley     aa    = ((MatScalar*)(baij->a)) + baij->i[row/bs]*bs2 + (row%bs);
18756f0a72daSMatthew G. Knepley     for (k = 0; k < count; ++k) {
18766f0a72daSMatthew G. Knepley       aa[0] = 0.0;
18776f0a72daSMatthew G. Knepley       aa   += bs;
18786f0a72daSMatthew G. Knepley     }
18796f0a72daSMatthew G. Knepley   }
18806f0a72daSMatthew G. Knepley   /* loop over all elements of off process part of matrix zeroing removed columns*/
18816f0a72daSMatthew G. Knepley   for (i = 0; i < l->B->rmap->N; ++i) {
18826f0a72daSMatthew G. Knepley     row = i/bs;
18836f0a72daSMatthew G. Knepley     for (j = baij->i[row]; j < baij->i[row+1]; ++j) {
18846f0a72daSMatthew G. Knepley       for (k = 0; k < bs; ++k) {
18856f0a72daSMatthew G. Knepley         col = bs*baij->j[j] + k;
18866f0a72daSMatthew G. Knepley         if (PetscAbsScalar(mask[col])) {
18876f0a72daSMatthew G. Knepley           aa = ((MatScalar*)(baij->a)) + j*bs2 + (i%bs) + bs*k;
18886f0a72daSMatthew G. Knepley           if (b) bb[i] -= aa[0]*xx[col];
18896f0a72daSMatthew G. Knepley           aa[0] = 0.0;
18906f0a72daSMatthew G. Knepley         }
18916f0a72daSMatthew G. Knepley       }
18926f0a72daSMatthew G. Knepley     }
18936f0a72daSMatthew G. Knepley   }
18946f0a72daSMatthew G. Knepley   if (x) {
18956f0a72daSMatthew G. Knepley     ierr = VecRestoreArray(b,&bb);CHKERRQ(ierr);
18966f0a72daSMatthew G. Knepley     ierr = VecRestoreArrayRead(l->lvec,&xx);CHKERRQ(ierr);
18976f0a72daSMatthew G. Knepley   }
18986f0a72daSMatthew G. Knepley   ierr = VecRestoreArray(lmask,&mask);CHKERRQ(ierr);
18996f0a72daSMatthew G. Knepley   ierr = VecDestroy(&lmask);CHKERRQ(ierr);
19006f0a72daSMatthew G. Knepley   ierr = PetscFree(lrows);CHKERRQ(ierr);
19014f9cfa9eSBarry Smith 
19024f9cfa9eSBarry Smith   /* only change matrix nonzero state if pattern was allowed to be changed */
19034f9cfa9eSBarry Smith   if (!((Mat_SeqBAIJ*)(l->A->data))->keepnonzeropattern) {
19044f9cfa9eSBarry Smith     PetscObjectState state = l->A->nonzerostate + l->B->nonzerostate;
19054f9cfa9eSBarry Smith     ierr = MPI_Allreduce(&state,&A->nonzerostate,1,MPIU_INT64,MPI_SUM,PetscObjectComm((PetscObject)A));CHKERRQ(ierr);
19064f9cfa9eSBarry Smith   }
19076f0a72daSMatthew G. Knepley   PetscFunctionReturn(0);
19086f0a72daSMatthew G. Knepley }
19096f0a72daSMatthew G. Knepley 
19106f0a72daSMatthew G. Knepley #undef __FUNCT__
19114a2ae208SSatish Balay #define __FUNCT__ "MatSetUnfactored_MPIBAIJ"
1912dfbe8321SBarry Smith PetscErrorCode MatSetUnfactored_MPIBAIJ(Mat A)
1913bb5a7306SBarry Smith {
1914bb5a7306SBarry Smith   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)A->data;
1915dfbe8321SBarry Smith   PetscErrorCode ierr;
1916d64ed03dSBarry Smith 
1917d64ed03dSBarry Smith   PetscFunctionBegin;
1918bb5a7306SBarry Smith   ierr = MatSetUnfactored(a->A);CHKERRQ(ierr);
19193a40ed3dSBarry Smith   PetscFunctionReturn(0);
1920bb5a7306SBarry Smith }
1921bb5a7306SBarry Smith 
19226849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIBAIJ(Mat,MatDuplicateOption,Mat*);
19230ac07820SSatish Balay 
19244a2ae208SSatish Balay #undef __FUNCT__
19254a2ae208SSatish Balay #define __FUNCT__ "MatEqual_MPIBAIJ"
1926ace3abfcSBarry Smith PetscErrorCode MatEqual_MPIBAIJ(Mat A,Mat B,PetscBool  *flag)
19277fc3c18eSBarry Smith {
19287fc3c18eSBarry Smith   Mat_MPIBAIJ    *matB = (Mat_MPIBAIJ*)B->data,*matA = (Mat_MPIBAIJ*)A->data;
19297fc3c18eSBarry Smith   Mat            a,b,c,d;
1930ace3abfcSBarry Smith   PetscBool      flg;
1931dfbe8321SBarry Smith   PetscErrorCode ierr;
19327fc3c18eSBarry Smith 
19337fc3c18eSBarry Smith   PetscFunctionBegin;
19347fc3c18eSBarry Smith   a = matA->A; b = matA->B;
19357fc3c18eSBarry Smith   c = matB->A; d = matB->B;
19367fc3c18eSBarry Smith 
19377fc3c18eSBarry Smith   ierr = MatEqual(a,c,&flg);CHKERRQ(ierr);
1938abc0a331SBarry Smith   if (flg) {
19397fc3c18eSBarry Smith     ierr = MatEqual(b,d,&flg);CHKERRQ(ierr);
19407fc3c18eSBarry Smith   }
1941ce94432eSBarry Smith   ierr = MPI_Allreduce(&flg,flag,1,MPIU_BOOL,MPI_LAND,PetscObjectComm((PetscObject)A));CHKERRQ(ierr);
19427fc3c18eSBarry Smith   PetscFunctionReturn(0);
19437fc3c18eSBarry Smith }
19447fc3c18eSBarry Smith 
19453c896bc6SHong Zhang #undef __FUNCT__
19463c896bc6SHong Zhang #define __FUNCT__ "MatCopy_MPIBAIJ"
19473c896bc6SHong Zhang PetscErrorCode MatCopy_MPIBAIJ(Mat A,Mat B,MatStructure str)
19483c896bc6SHong Zhang {
19493c896bc6SHong Zhang   PetscErrorCode ierr;
19503c896bc6SHong Zhang   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)A->data;
19513c896bc6SHong Zhang   Mat_MPIBAIJ    *b = (Mat_MPIBAIJ*)B->data;
19523c896bc6SHong Zhang 
19533c896bc6SHong Zhang   PetscFunctionBegin;
19543c896bc6SHong Zhang   /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */
19553c896bc6SHong Zhang   if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) {
19563c896bc6SHong Zhang     ierr = MatCopy_Basic(A,B,str);CHKERRQ(ierr);
19573c896bc6SHong Zhang   } else {
19583c896bc6SHong Zhang     ierr = MatCopy(a->A,b->A,str);CHKERRQ(ierr);
19593c896bc6SHong Zhang     ierr = MatCopy(a->B,b->B,str);CHKERRQ(ierr);
19603c896bc6SHong Zhang   }
19613c896bc6SHong Zhang   PetscFunctionReturn(0);
19623c896bc6SHong Zhang }
1963273d9f13SBarry Smith 
19644a2ae208SSatish Balay #undef __FUNCT__
19654994cf47SJed Brown #define __FUNCT__ "MatSetUp_MPIBAIJ"
19664994cf47SJed Brown PetscErrorCode MatSetUp_MPIBAIJ(Mat A)
1967273d9f13SBarry Smith {
1968dfbe8321SBarry Smith   PetscErrorCode ierr;
1969273d9f13SBarry Smith 
1970273d9f13SBarry Smith   PetscFunctionBegin;
1971535b19f3SBarry Smith   ierr = MatMPIBAIJSetPreallocation(A,A->rmap->bs,PETSC_DEFAULT,0,PETSC_DEFAULT,0);CHKERRQ(ierr);
1972273d9f13SBarry Smith   PetscFunctionReturn(0);
1973273d9f13SBarry Smith }
1974273d9f13SBarry Smith 
19754fe895cdSHong Zhang #undef __FUNCT__
19764de5dceeSHong Zhang #define __FUNCT__ "MatAXPYGetPreallocation_MPIBAIJ"
19774de5dceeSHong Zhang PetscErrorCode MatAXPYGetPreallocation_MPIBAIJ(Mat Y,const PetscInt *yltog,Mat X,const PetscInt *xltog,PetscInt *nnz)
19784de5dceeSHong Zhang {
1979001ddc4fSHong Zhang   PetscErrorCode ierr;
1980001ddc4fSHong Zhang   PetscInt       bs = Y->rmap->bs,m = Y->rmap->N/bs;
19814de5dceeSHong Zhang   Mat_SeqBAIJ    *x = (Mat_SeqBAIJ*)X->data;
19824de5dceeSHong Zhang   Mat_SeqBAIJ    *y = (Mat_SeqBAIJ*)Y->data;
19834de5dceeSHong Zhang 
19844de5dceeSHong Zhang   PetscFunctionBegin;
1985001ddc4fSHong Zhang   ierr = MatAXPYGetPreallocation_MPIX_private(m,x->i,x->j,xltog,y->i,y->j,yltog,nnz);CHKERRQ(ierr);
19864de5dceeSHong Zhang   PetscFunctionReturn(0);
19874de5dceeSHong Zhang }
19884de5dceeSHong Zhang 
19894de5dceeSHong Zhang #undef __FUNCT__
19904fe895cdSHong Zhang #define __FUNCT__ "MatAXPY_MPIBAIJ"
19914fe895cdSHong Zhang PetscErrorCode MatAXPY_MPIBAIJ(Mat Y,PetscScalar a,Mat X,MatStructure str)
19924fe895cdSHong Zhang {
19934fe895cdSHong Zhang   PetscErrorCode ierr;
19944fe895cdSHong Zhang   Mat_MPIBAIJ    *xx=(Mat_MPIBAIJ*)X->data,*yy=(Mat_MPIBAIJ*)Y->data;
19954fe895cdSHong Zhang   PetscBLASInt   bnz,one=1;
19964fe895cdSHong Zhang   Mat_SeqBAIJ    *x,*y;
19974fe895cdSHong Zhang 
19984fe895cdSHong Zhang   PetscFunctionBegin;
19994fe895cdSHong Zhang   if (str == SAME_NONZERO_PATTERN) {
20004fe895cdSHong Zhang     PetscScalar alpha = a;
20014fe895cdSHong Zhang     x    = (Mat_SeqBAIJ*)xx->A->data;
20024fe895cdSHong Zhang     y    = (Mat_SeqBAIJ*)yy->A->data;
2003c5df96a5SBarry Smith     ierr = PetscBLASIntCast(x->nz,&bnz);CHKERRQ(ierr);
20048b83055fSJed Brown     PetscStackCallBLAS("BLASaxpy",BLASaxpy_(&bnz,&alpha,x->a,&one,y->a,&one));
20054fe895cdSHong Zhang     x    = (Mat_SeqBAIJ*)xx->B->data;
20064fe895cdSHong Zhang     y    = (Mat_SeqBAIJ*)yy->B->data;
2007c5df96a5SBarry Smith     ierr = PetscBLASIntCast(x->nz,&bnz);CHKERRQ(ierr);
20088b83055fSJed Brown     PetscStackCallBLAS("BLASaxpy",BLASaxpy_(&bnz,&alpha,x->a,&one,y->a,&one));
2009a3fa217bSJose E. Roman     ierr = PetscObjectStateIncrease((PetscObject)Y);CHKERRQ(ierr);
20104fe895cdSHong Zhang   } else {
20114de5dceeSHong Zhang     Mat      B;
20124de5dceeSHong Zhang     PetscInt *nnz_d,*nnz_o,bs=Y->rmap->bs;
20134de5dceeSHong Zhang     ierr = PetscMalloc1(yy->A->rmap->N,&nnz_d);CHKERRQ(ierr);
20144de5dceeSHong Zhang     ierr = PetscMalloc1(yy->B->rmap->N,&nnz_o);CHKERRQ(ierr);
20154de5dceeSHong Zhang     ierr = MatCreate(PetscObjectComm((PetscObject)Y),&B);CHKERRQ(ierr);
20164de5dceeSHong Zhang     ierr = PetscObjectSetName((PetscObject)B,((PetscObject)Y)->name);CHKERRQ(ierr);
20174de5dceeSHong Zhang     ierr = MatSetSizes(B,Y->rmap->n,Y->cmap->n,Y->rmap->N,Y->cmap->N);CHKERRQ(ierr);
20184de5dceeSHong Zhang     ierr = MatSetBlockSizesFromMats(B,Y,Y);CHKERRQ(ierr);
20194de5dceeSHong Zhang     ierr = MatSetType(B,MATMPIBAIJ);CHKERRQ(ierr);
20204de5dceeSHong Zhang     ierr = MatAXPYGetPreallocation_SeqBAIJ(yy->A,xx->A,nnz_d);CHKERRQ(ierr);
20214de5dceeSHong Zhang     ierr = MatAXPYGetPreallocation_MPIBAIJ(yy->B,yy->garray,xx->B,xx->garray,nnz_o);CHKERRQ(ierr);
20224de5dceeSHong Zhang     ierr = MatMPIBAIJSetPreallocation(B,bs,0,nnz_d,0,nnz_o);CHKERRQ(ierr);
20234de5dceeSHong Zhang     /* MatAXPY_BasicWithPreallocation() for BAIJ matrix is much slower than AIJ, even for bs=1 ! */
20244de5dceeSHong Zhang     ierr = MatAXPY_BasicWithPreallocation(B,Y,a,X,str);CHKERRQ(ierr);
20254de5dceeSHong Zhang     ierr = MatHeaderReplace(Y,B);CHKERRQ(ierr);
20264de5dceeSHong Zhang     ierr = PetscFree(nnz_d);CHKERRQ(ierr);
20274de5dceeSHong Zhang     ierr = PetscFree(nnz_o);CHKERRQ(ierr);
20284fe895cdSHong Zhang   }
20294fe895cdSHong Zhang   PetscFunctionReturn(0);
20304fe895cdSHong Zhang }
20314fe895cdSHong Zhang 
203299cafbc1SBarry Smith #undef __FUNCT__
203399cafbc1SBarry Smith #define __FUNCT__ "MatRealPart_MPIBAIJ"
203499cafbc1SBarry Smith PetscErrorCode MatRealPart_MPIBAIJ(Mat A)
203599cafbc1SBarry Smith {
203699cafbc1SBarry Smith   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)A->data;
203799cafbc1SBarry Smith   PetscErrorCode ierr;
203899cafbc1SBarry Smith 
203999cafbc1SBarry Smith   PetscFunctionBegin;
204099cafbc1SBarry Smith   ierr = MatRealPart(a->A);CHKERRQ(ierr);
204199cafbc1SBarry Smith   ierr = MatRealPart(a->B);CHKERRQ(ierr);
204299cafbc1SBarry Smith   PetscFunctionReturn(0);
204399cafbc1SBarry Smith }
204499cafbc1SBarry Smith 
204599cafbc1SBarry Smith #undef __FUNCT__
204699cafbc1SBarry Smith #define __FUNCT__ "MatImaginaryPart_MPIBAIJ"
204799cafbc1SBarry Smith PetscErrorCode MatImaginaryPart_MPIBAIJ(Mat A)
204899cafbc1SBarry Smith {
204999cafbc1SBarry Smith   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)A->data;
205099cafbc1SBarry Smith   PetscErrorCode ierr;
205199cafbc1SBarry Smith 
205299cafbc1SBarry Smith   PetscFunctionBegin;
205399cafbc1SBarry Smith   ierr = MatImaginaryPart(a->A);CHKERRQ(ierr);
205499cafbc1SBarry Smith   ierr = MatImaginaryPart(a->B);CHKERRQ(ierr);
205599cafbc1SBarry Smith   PetscFunctionReturn(0);
205699cafbc1SBarry Smith }
205799cafbc1SBarry Smith 
205882094794SBarry Smith #undef __FUNCT__
205982094794SBarry Smith #define __FUNCT__ "MatGetSubMatrix_MPIBAIJ"
20604aa3045dSJed Brown PetscErrorCode MatGetSubMatrix_MPIBAIJ(Mat mat,IS isrow,IS iscol,MatReuse call,Mat *newmat)
20614aa3045dSJed Brown {
20624aa3045dSJed Brown   PetscErrorCode ierr;
20634aa3045dSJed Brown   IS             iscol_local;
20644aa3045dSJed Brown   PetscInt       csize;
20654aa3045dSJed Brown 
20664aa3045dSJed Brown   PetscFunctionBegin;
20674aa3045dSJed Brown   ierr = ISGetLocalSize(iscol,&csize);CHKERRQ(ierr);
2068b79d0421SJed Brown   if (call == MAT_REUSE_MATRIX) {
2069b79d0421SJed Brown     ierr = PetscObjectQuery((PetscObject)*newmat,"ISAllGather",(PetscObject*)&iscol_local);CHKERRQ(ierr);
2070e32f2f54SBarry Smith     if (!iscol_local) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Submatrix passed in was not used before, cannot reuse");
2071b79d0421SJed Brown   } else {
20724aa3045dSJed Brown     ierr = ISAllGather(iscol,&iscol_local);CHKERRQ(ierr);
2073b79d0421SJed Brown   }
20744aa3045dSJed Brown   ierr = MatGetSubMatrix_MPIBAIJ_Private(mat,isrow,iscol_local,csize,call,newmat);CHKERRQ(ierr);
2075b79d0421SJed Brown   if (call == MAT_INITIAL_MATRIX) {
2076b79d0421SJed Brown     ierr = PetscObjectCompose((PetscObject)*newmat,"ISAllGather",(PetscObject)iscol_local);CHKERRQ(ierr);
20776bf464f9SBarry Smith     ierr = ISDestroy(&iscol_local);CHKERRQ(ierr);
2078b79d0421SJed Brown   }
20794aa3045dSJed Brown   PetscFunctionReturn(0);
20804aa3045dSJed Brown }
208129dcf524SDmitry Karpeev extern PetscErrorCode MatGetSubMatrices_MPIBAIJ_local(Mat,PetscInt,const IS[],const IS[],MatReuse,PetscBool*,PetscBool*,Mat*);
20824aa3045dSJed Brown #undef __FUNCT__
2083dd183c9eSJed Brown #define __FUNCT__ "MatGetSubMatrix_MPIBAIJ_Private"
208482094794SBarry Smith /*
208582094794SBarry Smith   Not great since it makes two copies of the submatrix, first an SeqBAIJ
208682094794SBarry Smith   in local and then by concatenating the local matrices the end result.
208782094794SBarry Smith   Writing it directly would be much like MatGetSubMatrices_MPIBAIJ()
208882094794SBarry Smith */
20894aa3045dSJed Brown PetscErrorCode MatGetSubMatrix_MPIBAIJ_Private(Mat mat,IS isrow,IS iscol,PetscInt csize,MatReuse call,Mat *newmat)
209082094794SBarry Smith {
209182094794SBarry Smith   PetscErrorCode ierr;
209282094794SBarry Smith   PetscMPIInt    rank,size;
209382094794SBarry Smith   PetscInt       i,m,n,rstart,row,rend,nz,*cwork,j,bs;
209429dcf524SDmitry Karpeev   PetscInt       *ii,*jj,nlocal,*dlens,*olens,dlen,olen,jend,mglobal,ncol,nrow;
209529dcf524SDmitry Karpeev   Mat            M,Mreuse;
209682094794SBarry Smith   MatScalar      *vwork,*aa;
2097ce94432eSBarry Smith   MPI_Comm       comm;
209829dcf524SDmitry Karpeev   IS             isrow_new, iscol_new;
209929dcf524SDmitry Karpeev   PetscBool      idflag,allrows, allcols;
210082094794SBarry Smith   Mat_SeqBAIJ    *aij;
210182094794SBarry Smith 
210282094794SBarry Smith   PetscFunctionBegin;
2103ce94432eSBarry Smith   ierr = PetscObjectGetComm((PetscObject)mat,&comm);CHKERRQ(ierr);
210482094794SBarry Smith   ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr);
210582094794SBarry Smith   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
210629dcf524SDmitry Karpeev   /* The compression and expansion should be avoided. Doesn't point
210729dcf524SDmitry Karpeev      out errors, might change the indices, hence buggey */
210829dcf524SDmitry Karpeev   ierr = ISCompressIndicesGeneral(mat->rmap->N,mat->rmap->n,mat->rmap->bs,1,&isrow,&isrow_new);CHKERRQ(ierr);
210929dcf524SDmitry Karpeev   ierr = ISCompressIndicesGeneral(mat->cmap->N,mat->cmap->n,mat->cmap->bs,1,&iscol,&iscol_new);CHKERRQ(ierr);
211082094794SBarry Smith 
211129dcf524SDmitry Karpeev   /* Check for special case: each processor gets entire matrix columns */
211229dcf524SDmitry Karpeev   ierr = ISIdentity(iscol,&idflag);CHKERRQ(ierr);
211329dcf524SDmitry Karpeev   ierr = ISGetLocalSize(iscol,&ncol);CHKERRQ(ierr);
211426fbe8dcSKarl Rupp   if (idflag && ncol == mat->cmap->N) allcols = PETSC_TRUE;
211526fbe8dcSKarl Rupp   else allcols = PETSC_FALSE;
211629dcf524SDmitry Karpeev 
211729dcf524SDmitry Karpeev   ierr = ISIdentity(isrow,&idflag);CHKERRQ(ierr);
211829dcf524SDmitry Karpeev   ierr = ISGetLocalSize(isrow,&nrow);CHKERRQ(ierr);
211926fbe8dcSKarl Rupp   if (idflag && nrow == mat->rmap->N) allrows = PETSC_TRUE;
212026fbe8dcSKarl Rupp   else allrows = PETSC_FALSE;
212126fbe8dcSKarl Rupp 
212282094794SBarry Smith   if (call ==  MAT_REUSE_MATRIX) {
212382094794SBarry Smith     ierr = PetscObjectQuery((PetscObject)*newmat,"SubMatrix",(PetscObject*)&Mreuse);CHKERRQ(ierr);
2124e32f2f54SBarry Smith     if (!Mreuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Submatrix passed in was not used before, cannot reuse");
212575f6568bSJed Brown     ierr = MatGetSubMatrices_MPIBAIJ_local(mat,1,&isrow_new,&iscol_new,MAT_REUSE_MATRIX,&allrows,&allcols,&Mreuse);CHKERRQ(ierr);
212682094794SBarry Smith   } else {
212775f6568bSJed Brown     ierr = MatGetSubMatrices_MPIBAIJ_local(mat,1,&isrow_new,&iscol_new,MAT_INITIAL_MATRIX,&allrows,&allcols,&Mreuse);CHKERRQ(ierr);
212882094794SBarry Smith   }
212929dcf524SDmitry Karpeev   ierr = ISDestroy(&isrow_new);CHKERRQ(ierr);
213029dcf524SDmitry Karpeev   ierr = ISDestroy(&iscol_new);CHKERRQ(ierr);
213182094794SBarry Smith   /*
213282094794SBarry Smith       m - number of local rows
213382094794SBarry Smith       n - number of columns (same on all processors)
213482094794SBarry Smith       rstart - first row in new global matrix generated
213582094794SBarry Smith   */
213682094794SBarry Smith   ierr = MatGetBlockSize(mat,&bs);CHKERRQ(ierr);
213782094794SBarry Smith   ierr = MatGetSize(Mreuse,&m,&n);CHKERRQ(ierr);
213882094794SBarry Smith   m    = m/bs;
213982094794SBarry Smith   n    = n/bs;
214082094794SBarry Smith 
214182094794SBarry Smith   if (call == MAT_INITIAL_MATRIX) {
214282094794SBarry Smith     aij = (Mat_SeqBAIJ*)(Mreuse)->data;
214382094794SBarry Smith     ii  = aij->i;
214482094794SBarry Smith     jj  = aij->j;
214582094794SBarry Smith 
214682094794SBarry Smith     /*
214782094794SBarry Smith         Determine the number of non-zeros in the diagonal and off-diagonal
214882094794SBarry Smith         portions of the matrix in order to do correct preallocation
214982094794SBarry Smith     */
215082094794SBarry Smith 
215182094794SBarry Smith     /* first get start and end of "diagonal" columns */
215282094794SBarry Smith     if (csize == PETSC_DECIDE) {
215382094794SBarry Smith       ierr = ISGetSize(isrow,&mglobal);CHKERRQ(ierr);
215482094794SBarry Smith       if (mglobal == n*bs) { /* square matrix */
215582094794SBarry Smith         nlocal = m;
215682094794SBarry Smith       } else {
215782094794SBarry Smith         nlocal = n/size + ((n % size) > rank);
215882094794SBarry Smith       }
215982094794SBarry Smith     } else {
216082094794SBarry Smith       nlocal = csize/bs;
216182094794SBarry Smith     }
216282094794SBarry Smith     ierr   = MPI_Scan(&nlocal,&rend,1,MPIU_INT,MPI_SUM,comm);CHKERRQ(ierr);
216382094794SBarry Smith     rstart = rend - nlocal;
216465e19b50SBarry Smith     if (rank == size - 1 && rend != n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Local column sizes %D do not add up to total number of columns %D",rend,n);
216582094794SBarry Smith 
216682094794SBarry Smith     /* next, compute all the lengths */
2167dcca6d9dSJed Brown     ierr  = PetscMalloc2(m+1,&dlens,m+1,&olens);CHKERRQ(ierr);
216882094794SBarry Smith     for (i=0; i<m; i++) {
216982094794SBarry Smith       jend = ii[i+1] - ii[i];
217082094794SBarry Smith       olen = 0;
217182094794SBarry Smith       dlen = 0;
217282094794SBarry Smith       for (j=0; j<jend; j++) {
217382094794SBarry Smith         if (*jj < rstart || *jj >= rend) olen++;
217482094794SBarry Smith         else dlen++;
217582094794SBarry Smith         jj++;
217682094794SBarry Smith       }
217782094794SBarry Smith       olens[i] = olen;
217882094794SBarry Smith       dlens[i] = dlen;
217982094794SBarry Smith     }
218082094794SBarry Smith     ierr = MatCreate(comm,&M);CHKERRQ(ierr);
218182094794SBarry Smith     ierr = MatSetSizes(M,bs*m,bs*nlocal,PETSC_DECIDE,bs*n);CHKERRQ(ierr);
218282094794SBarry Smith     ierr = MatSetType(M,((PetscObject)mat)->type_name);CHKERRQ(ierr);
218382094794SBarry Smith     ierr = MatMPIBAIJSetPreallocation(M,bs,0,dlens,0,olens);CHKERRQ(ierr);
2184eb9baa12SBarry Smith     ierr = PetscFree2(dlens,olens);CHKERRQ(ierr);
218582094794SBarry Smith   } else {
218682094794SBarry Smith     PetscInt ml,nl;
218782094794SBarry Smith 
218882094794SBarry Smith     M    = *newmat;
218982094794SBarry Smith     ierr = MatGetLocalSize(M,&ml,&nl);CHKERRQ(ierr);
2190e32f2f54SBarry Smith     if (ml != m) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Previous matrix must be same size/layout as request");
219182094794SBarry Smith     ierr = MatZeroEntries(M);CHKERRQ(ierr);
219282094794SBarry Smith     /*
219382094794SBarry Smith          The next two lines are needed so we may call MatSetValues_MPIAIJ() below directly,
219482094794SBarry Smith        rather than the slower MatSetValues().
219582094794SBarry Smith     */
219682094794SBarry Smith     M->was_assembled = PETSC_TRUE;
219782094794SBarry Smith     M->assembled     = PETSC_FALSE;
219882094794SBarry Smith   }
219982094794SBarry Smith   ierr = MatSetOption(M,MAT_ROW_ORIENTED,PETSC_FALSE);CHKERRQ(ierr);
220082094794SBarry Smith   ierr = MatGetOwnershipRange(M,&rstart,&rend);CHKERRQ(ierr);
220182094794SBarry Smith   aij  = (Mat_SeqBAIJ*)(Mreuse)->data;
220282094794SBarry Smith   ii   = aij->i;
220382094794SBarry Smith   jj   = aij->j;
220482094794SBarry Smith   aa   = aij->a;
220582094794SBarry Smith   for (i=0; i<m; i++) {
220682094794SBarry Smith     row   = rstart/bs + i;
220782094794SBarry Smith     nz    = ii[i+1] - ii[i];
220882094794SBarry Smith     cwork = jj;     jj += nz;
220975f6568bSJed Brown     vwork = aa;     aa += nz*bs*bs;
221082094794SBarry Smith     ierr  = MatSetValuesBlocked_MPIBAIJ(M,1,&row,nz,cwork,vwork,INSERT_VALUES);CHKERRQ(ierr);
221182094794SBarry Smith   }
221282094794SBarry Smith 
221382094794SBarry Smith   ierr    = MatAssemblyBegin(M,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
221482094794SBarry Smith   ierr    = MatAssemblyEnd(M,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
221582094794SBarry Smith   *newmat = M;
221682094794SBarry Smith 
221782094794SBarry Smith   /* save submatrix used in processor for next request */
221882094794SBarry Smith   if (call ==  MAT_INITIAL_MATRIX) {
221982094794SBarry Smith     ierr = PetscObjectCompose((PetscObject)M,"SubMatrix",(PetscObject)Mreuse);CHKERRQ(ierr);
222082094794SBarry Smith     ierr = PetscObjectDereference((PetscObject)Mreuse);CHKERRQ(ierr);
222182094794SBarry Smith   }
222282094794SBarry Smith   PetscFunctionReturn(0);
222382094794SBarry Smith }
222482094794SBarry Smith 
222582094794SBarry Smith #undef __FUNCT__
222682094794SBarry Smith #define __FUNCT__ "MatPermute_MPIBAIJ"
222782094794SBarry Smith PetscErrorCode MatPermute_MPIBAIJ(Mat A,IS rowp,IS colp,Mat *B)
222882094794SBarry Smith {
222982094794SBarry Smith   MPI_Comm       comm,pcomm;
2230a0a83eb5SRémi Lacroix   PetscInt       clocal_size,nrows;
223182094794SBarry Smith   const PetscInt *rows;
2232dbf0e21dSBarry Smith   PetscMPIInt    size;
2233a0a83eb5SRémi Lacroix   IS             crowp,lcolp;
223482094794SBarry Smith   PetscErrorCode ierr;
223582094794SBarry Smith 
223682094794SBarry Smith   PetscFunctionBegin;
223782094794SBarry Smith   ierr = PetscObjectGetComm((PetscObject)A,&comm);CHKERRQ(ierr);
223882094794SBarry Smith   /* make a collective version of 'rowp' */
223982094794SBarry Smith   ierr = PetscObjectGetComm((PetscObject)rowp,&pcomm);CHKERRQ(ierr);
224082094794SBarry Smith   if (pcomm==comm) {
224182094794SBarry Smith     crowp = rowp;
224282094794SBarry Smith   } else {
224382094794SBarry Smith     ierr = ISGetSize(rowp,&nrows);CHKERRQ(ierr);
224482094794SBarry Smith     ierr = ISGetIndices(rowp,&rows);CHKERRQ(ierr);
224570b3c8c7SBarry Smith     ierr = ISCreateGeneral(comm,nrows,rows,PETSC_COPY_VALUES,&crowp);CHKERRQ(ierr);
224682094794SBarry Smith     ierr = ISRestoreIndices(rowp,&rows);CHKERRQ(ierr);
224782094794SBarry Smith   }
2248a0a83eb5SRémi Lacroix   ierr = ISSetPermutation(crowp);CHKERRQ(ierr);
2249a0a83eb5SRémi Lacroix   /* make a local version of 'colp' */
225082094794SBarry Smith   ierr = PetscObjectGetComm((PetscObject)colp,&pcomm);CHKERRQ(ierr);
2251dbf0e21dSBarry Smith   ierr = MPI_Comm_size(pcomm,&size);CHKERRQ(ierr);
2252dbf0e21dSBarry Smith   if (size==1) {
225382094794SBarry Smith     lcolp = colp;
225482094794SBarry Smith   } else {
225575f6568bSJed Brown     ierr = ISAllGather(colp,&lcolp);CHKERRQ(ierr);
225682094794SBarry Smith   }
2257dbf0e21dSBarry Smith   ierr = ISSetPermutation(lcolp);CHKERRQ(ierr);
225875f6568bSJed Brown   /* now we just get the submatrix */
22597afc1a8bSJed Brown   ierr = MatGetLocalSize(A,NULL,&clocal_size);CHKERRQ(ierr);
2260a0a83eb5SRémi Lacroix   ierr = MatGetSubMatrix_MPIBAIJ_Private(A,crowp,lcolp,clocal_size,MAT_INITIAL_MATRIX,B);CHKERRQ(ierr);
2261a0a83eb5SRémi Lacroix   /* clean up */
2262a0a83eb5SRémi Lacroix   if (pcomm!=comm) {
2263a0a83eb5SRémi Lacroix     ierr = ISDestroy(&crowp);CHKERRQ(ierr);
2264a0a83eb5SRémi Lacroix   }
2265dbf0e21dSBarry Smith   if (size>1) {
22666bf464f9SBarry Smith     ierr = ISDestroy(&lcolp);CHKERRQ(ierr);
226782094794SBarry Smith   }
226882094794SBarry Smith   PetscFunctionReturn(0);
226982094794SBarry Smith }
227082094794SBarry Smith 
22718c7482ecSBarry Smith #undef __FUNCT__
22728c7482ecSBarry Smith #define __FUNCT__ "MatGetGhosts_MPIBAIJ"
22737087cfbeSBarry Smith PetscErrorCode  MatGetGhosts_MPIBAIJ(Mat mat,PetscInt *nghosts,const PetscInt *ghosts[])
22748c7482ecSBarry Smith {
22758c7482ecSBarry Smith   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*) mat->data;
22768c7482ecSBarry Smith   Mat_SeqBAIJ *B    = (Mat_SeqBAIJ*)baij->B->data;
22778c7482ecSBarry Smith 
22788c7482ecSBarry Smith   PetscFunctionBegin;
227926fbe8dcSKarl Rupp   if (nghosts) *nghosts = B->nbs;
228026fbe8dcSKarl Rupp   if (ghosts) *ghosts = baij->garray;
22818c7482ecSBarry Smith   PetscFunctionReturn(0);
22828c7482ecSBarry Smith }
22838c7482ecSBarry Smith 
2284f6d58c54SBarry Smith #undef __FUNCT__
2285d1adec66SJed Brown #define __FUNCT__ "MatGetSeqNonzeroStructure_MPIBAIJ"
2286d1adec66SJed Brown PetscErrorCode MatGetSeqNonzeroStructure_MPIBAIJ(Mat A,Mat *newmat)
2287f6d58c54SBarry Smith {
2288f6d58c54SBarry Smith   Mat            B;
2289f6d58c54SBarry Smith   Mat_MPIBAIJ    *a  = (Mat_MPIBAIJ*)A->data;
2290f6d58c54SBarry Smith   Mat_SeqBAIJ    *ad = (Mat_SeqBAIJ*)a->A->data,*bd = (Mat_SeqBAIJ*)a->B->data;
2291f6d58c54SBarry Smith   Mat_SeqAIJ     *b;
2292f6d58c54SBarry Smith   PetscErrorCode ierr;
2293f6d58c54SBarry Smith   PetscMPIInt    size,rank,*recvcounts = 0,*displs = 0;
2294f6d58c54SBarry Smith   PetscInt       sendcount,i,*rstarts = A->rmap->range,n,cnt,j,bs = A->rmap->bs;
2295f6d58c54SBarry Smith   PetscInt       m,*garray = a->garray,*lens,*jsendbuf,*a_jsendbuf,*b_jsendbuf;
2296f6d58c54SBarry Smith 
2297f6d58c54SBarry Smith   PetscFunctionBegin;
2298ce94432eSBarry Smith   ierr = MPI_Comm_size(PetscObjectComm((PetscObject)A),&size);CHKERRQ(ierr);
2299ce94432eSBarry Smith   ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)A),&rank);CHKERRQ(ierr);
2300f6d58c54SBarry Smith 
2301f6d58c54SBarry Smith   /* ----------------------------------------------------------------
2302f6d58c54SBarry Smith      Tell every processor the number of nonzeros per row
2303f6d58c54SBarry Smith   */
2304785e854fSJed Brown   ierr = PetscMalloc1((A->rmap->N/bs),&lens);CHKERRQ(ierr);
2305f6d58c54SBarry Smith   for (i=A->rmap->rstart/bs; i<A->rmap->rend/bs; i++) {
2306f6d58c54SBarry Smith     lens[i] = ad->i[i-A->rmap->rstart/bs+1] - ad->i[i-A->rmap->rstart/bs] + bd->i[i-A->rmap->rstart/bs+1] - bd->i[i-A->rmap->rstart/bs];
2307f6d58c54SBarry Smith   }
2308f6d58c54SBarry Smith   sendcount = A->rmap->rend/bs - A->rmap->rstart/bs;
2309785e854fSJed Brown   ierr      = PetscMalloc1(2*size,&recvcounts);CHKERRQ(ierr);
2310f6d58c54SBarry Smith   displs    = recvcounts + size;
2311f6d58c54SBarry Smith   for (i=0; i<size; i++) {
2312f6d58c54SBarry Smith     recvcounts[i] = A->rmap->range[i+1]/bs - A->rmap->range[i]/bs;
2313f6d58c54SBarry Smith     displs[i]     = A->rmap->range[i]/bs;
2314f6d58c54SBarry Smith   }
2315f6d58c54SBarry Smith #if defined(PETSC_HAVE_MPI_IN_PLACE)
2316ce94432eSBarry Smith   ierr = MPI_Allgatherv(MPI_IN_PLACE,0,MPI_DATATYPE_NULL,lens,recvcounts,displs,MPIU_INT,PetscObjectComm((PetscObject)A));CHKERRQ(ierr);
2317f6d58c54SBarry Smith #else
2318ce94432eSBarry Smith   ierr = MPI_Allgatherv(lens+A->rmap->rstart/bs,sendcount,MPIU_INT,lens,recvcounts,displs,MPIU_INT,PetscObjectComm((PetscObject)A));CHKERRQ(ierr);
2319f6d58c54SBarry Smith #endif
2320f6d58c54SBarry Smith   /* ---------------------------------------------------------------
2321f6d58c54SBarry Smith      Create the sequential matrix of the same type as the local block diagonal
2322f6d58c54SBarry Smith   */
2323f6d58c54SBarry Smith   ierr = MatCreate(PETSC_COMM_SELF,&B);CHKERRQ(ierr);
2324f6d58c54SBarry Smith   ierr = MatSetSizes(B,A->rmap->N/bs,A->cmap->N/bs,PETSC_DETERMINE,PETSC_DETERMINE);CHKERRQ(ierr);
2325f6d58c54SBarry Smith   ierr = MatSetType(B,MATSEQAIJ);CHKERRQ(ierr);
2326f6d58c54SBarry Smith   ierr = MatSeqAIJSetPreallocation(B,0,lens);CHKERRQ(ierr);
2327f6d58c54SBarry Smith   b    = (Mat_SeqAIJ*)B->data;
2328f6d58c54SBarry Smith 
2329f6d58c54SBarry Smith   /*--------------------------------------------------------------------
2330f6d58c54SBarry Smith     Copy my part of matrix column indices over
2331f6d58c54SBarry Smith   */
2332f6d58c54SBarry Smith   sendcount  = ad->nz + bd->nz;
2333f6d58c54SBarry Smith   jsendbuf   = b->j + b->i[rstarts[rank]/bs];
2334f6d58c54SBarry Smith   a_jsendbuf = ad->j;
2335f6d58c54SBarry Smith   b_jsendbuf = bd->j;
2336f6d58c54SBarry Smith   n          = A->rmap->rend/bs - A->rmap->rstart/bs;
2337f6d58c54SBarry Smith   cnt        = 0;
2338f6d58c54SBarry Smith   for (i=0; i<n; i++) {
2339f6d58c54SBarry Smith 
2340f6d58c54SBarry Smith     /* put in lower diagonal portion */
2341f6d58c54SBarry Smith     m = bd->i[i+1] - bd->i[i];
2342f6d58c54SBarry Smith     while (m > 0) {
2343f6d58c54SBarry Smith       /* is it above diagonal (in bd (compressed) numbering) */
2344f6d58c54SBarry Smith       if (garray[*b_jsendbuf] > A->rmap->rstart/bs + i) break;
2345f6d58c54SBarry Smith       jsendbuf[cnt++] = garray[*b_jsendbuf++];
2346f6d58c54SBarry Smith       m--;
2347f6d58c54SBarry Smith     }
2348f6d58c54SBarry Smith 
2349f6d58c54SBarry Smith     /* put in diagonal portion */
2350f6d58c54SBarry Smith     for (j=ad->i[i]; j<ad->i[i+1]; j++) {
2351f6d58c54SBarry Smith       jsendbuf[cnt++] = A->rmap->rstart/bs + *a_jsendbuf++;
2352f6d58c54SBarry Smith     }
2353f6d58c54SBarry Smith 
2354f6d58c54SBarry Smith     /* put in upper diagonal portion */
2355f6d58c54SBarry Smith     while (m-- > 0) {
2356f6d58c54SBarry Smith       jsendbuf[cnt++] = garray[*b_jsendbuf++];
2357f6d58c54SBarry Smith     }
2358f6d58c54SBarry Smith   }
2359e32f2f54SBarry Smith   if (cnt != sendcount) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Corrupted PETSc matrix: nz given %D actual nz %D",sendcount,cnt);
2360f6d58c54SBarry Smith 
2361f6d58c54SBarry Smith   /*--------------------------------------------------------------------
2362f6d58c54SBarry Smith     Gather all column indices to all processors
2363f6d58c54SBarry Smith   */
2364f6d58c54SBarry Smith   for (i=0; i<size; i++) {
2365f6d58c54SBarry Smith     recvcounts[i] = 0;
2366f6d58c54SBarry Smith     for (j=A->rmap->range[i]/bs; j<A->rmap->range[i+1]/bs; j++) {
2367f6d58c54SBarry Smith       recvcounts[i] += lens[j];
2368f6d58c54SBarry Smith     }
2369f6d58c54SBarry Smith   }
2370f6d58c54SBarry Smith   displs[0] = 0;
2371f6d58c54SBarry Smith   for (i=1; i<size; i++) {
2372f6d58c54SBarry Smith     displs[i] = displs[i-1] + recvcounts[i-1];
2373f6d58c54SBarry Smith   }
2374f6d58c54SBarry Smith #if defined(PETSC_HAVE_MPI_IN_PLACE)
2375ce94432eSBarry Smith   ierr = MPI_Allgatherv(MPI_IN_PLACE,0,MPI_DATATYPE_NULL,b->j,recvcounts,displs,MPIU_INT,PetscObjectComm((PetscObject)A));CHKERRQ(ierr);
2376f6d58c54SBarry Smith #else
2377ce94432eSBarry Smith   ierr = MPI_Allgatherv(jsendbuf,sendcount,MPIU_INT,b->j,recvcounts,displs,MPIU_INT,PetscObjectComm((PetscObject)A));CHKERRQ(ierr);
2378f6d58c54SBarry Smith #endif
2379f6d58c54SBarry Smith   /*--------------------------------------------------------------------
2380f6d58c54SBarry Smith     Assemble the matrix into useable form (note numerical values not yet set)
2381f6d58c54SBarry Smith   */
2382f6d58c54SBarry Smith   /* set the b->ilen (length of each row) values */
2383f6d58c54SBarry Smith   ierr = PetscMemcpy(b->ilen,lens,(A->rmap->N/bs)*sizeof(PetscInt));CHKERRQ(ierr);
2384f6d58c54SBarry Smith   /* set the b->i indices */
2385f6d58c54SBarry Smith   b->i[0] = 0;
2386f6d58c54SBarry Smith   for (i=1; i<=A->rmap->N/bs; i++) {
2387f6d58c54SBarry Smith     b->i[i] = b->i[i-1] + lens[i-1];
2388f6d58c54SBarry Smith   }
2389f6d58c54SBarry Smith   ierr = PetscFree(lens);CHKERRQ(ierr);
2390f6d58c54SBarry Smith   ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
2391f6d58c54SBarry Smith   ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
2392f6d58c54SBarry Smith   ierr = PetscFree(recvcounts);CHKERRQ(ierr);
2393f6d58c54SBarry Smith 
2394f6d58c54SBarry Smith   if (A->symmetric) {
2395f6d58c54SBarry Smith     ierr = MatSetOption(B,MAT_SYMMETRIC,PETSC_TRUE);CHKERRQ(ierr);
2396f6d58c54SBarry Smith   } else if (A->hermitian) {
2397f6d58c54SBarry Smith     ierr = MatSetOption(B,MAT_HERMITIAN,PETSC_TRUE);CHKERRQ(ierr);
2398f6d58c54SBarry Smith   } else if (A->structurally_symmetric) {
2399f6d58c54SBarry Smith     ierr = MatSetOption(B,MAT_STRUCTURALLY_SYMMETRIC,PETSC_TRUE);CHKERRQ(ierr);
2400f6d58c54SBarry Smith   }
2401f6d58c54SBarry Smith   *newmat = B;
2402f6d58c54SBarry Smith   PetscFunctionReturn(0);
2403f6d58c54SBarry Smith }
2404f6d58c54SBarry Smith 
2405b1a666ecSBarry Smith #undef __FUNCT__
2406b1a666ecSBarry Smith #define __FUNCT__ "MatSOR_MPIBAIJ"
2407b1a666ecSBarry Smith PetscErrorCode MatSOR_MPIBAIJ(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx)
2408b1a666ecSBarry Smith {
2409b1a666ecSBarry Smith   Mat_MPIBAIJ    *mat = (Mat_MPIBAIJ*)matin->data;
2410b1a666ecSBarry Smith   PetscErrorCode ierr;
2411b1a666ecSBarry Smith   Vec            bb1 = 0;
2412b1a666ecSBarry Smith 
2413b1a666ecSBarry Smith   PetscFunctionBegin;
2414b1a666ecSBarry Smith   if (flag == SOR_APPLY_UPPER) {
2415b1a666ecSBarry Smith     ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr);
2416b1a666ecSBarry Smith     PetscFunctionReturn(0);
2417b1a666ecSBarry Smith   }
2418b1a666ecSBarry Smith 
24194e980039SJed Brown   if (its > 1 || ~flag & SOR_ZERO_INITIAL_GUESS) {
24204e980039SJed Brown     ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr);
24214e980039SJed Brown   }
24224e980039SJed Brown 
2423b1a666ecSBarry Smith   if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP) {
2424b1a666ecSBarry Smith     if (flag & SOR_ZERO_INITIAL_GUESS) {
2425b1a666ecSBarry Smith       ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr);
2426b1a666ecSBarry Smith       its--;
2427b1a666ecSBarry Smith     }
2428b1a666ecSBarry Smith 
2429b1a666ecSBarry Smith     while (its--) {
2430b1a666ecSBarry Smith       ierr = VecScatterBegin(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
2431b1a666ecSBarry Smith       ierr = VecScatterEnd(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
2432b1a666ecSBarry Smith 
2433b1a666ecSBarry Smith       /* update rhs: bb1 = bb - B*x */
2434b1a666ecSBarry Smith       ierr = VecScale(mat->lvec,-1.0);CHKERRQ(ierr);
2435b1a666ecSBarry Smith       ierr = (*mat->B->ops->multadd)(mat->B,mat->lvec,bb,bb1);CHKERRQ(ierr);
2436b1a666ecSBarry Smith 
2437b1a666ecSBarry Smith       /* local sweep */
2438b1a666ecSBarry Smith       ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,1,xx);CHKERRQ(ierr);
2439b1a666ecSBarry Smith     }
2440b1a666ecSBarry Smith   } else if (flag & SOR_LOCAL_FORWARD_SWEEP) {
2441b1a666ecSBarry Smith     if (flag & SOR_ZERO_INITIAL_GUESS) {
2442b1a666ecSBarry Smith       ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr);
2443b1a666ecSBarry Smith       its--;
2444b1a666ecSBarry Smith     }
2445b1a666ecSBarry Smith     while (its--) {
2446b1a666ecSBarry Smith       ierr = VecScatterBegin(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
2447b1a666ecSBarry Smith       ierr = VecScatterEnd(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
2448b1a666ecSBarry Smith 
2449b1a666ecSBarry Smith       /* update rhs: bb1 = bb - B*x */
2450b1a666ecSBarry Smith       ierr = VecScale(mat->lvec,-1.0);CHKERRQ(ierr);
2451b1a666ecSBarry Smith       ierr = (*mat->B->ops->multadd)(mat->B,mat->lvec,bb,bb1);CHKERRQ(ierr);
2452b1a666ecSBarry Smith 
2453b1a666ecSBarry Smith       /* local sweep */
2454b1a666ecSBarry Smith       ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_FORWARD_SWEEP,fshift,lits,1,xx);CHKERRQ(ierr);
2455b1a666ecSBarry Smith     }
2456b1a666ecSBarry Smith   } else if (flag & SOR_LOCAL_BACKWARD_SWEEP) {
2457b1a666ecSBarry Smith     if (flag & SOR_ZERO_INITIAL_GUESS) {
2458b1a666ecSBarry Smith       ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr);
2459b1a666ecSBarry Smith       its--;
2460b1a666ecSBarry Smith     }
2461b1a666ecSBarry Smith     while (its--) {
2462b1a666ecSBarry Smith       ierr = VecScatterBegin(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
2463b1a666ecSBarry Smith       ierr = VecScatterEnd(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
2464b1a666ecSBarry Smith 
2465b1a666ecSBarry Smith       /* update rhs: bb1 = bb - B*x */
2466b1a666ecSBarry Smith       ierr = VecScale(mat->lvec,-1.0);CHKERRQ(ierr);
2467b1a666ecSBarry Smith       ierr = (*mat->B->ops->multadd)(mat->B,mat->lvec,bb,bb1);CHKERRQ(ierr);
2468b1a666ecSBarry Smith 
2469b1a666ecSBarry Smith       /* local sweep */
2470b1a666ecSBarry Smith       ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_BACKWARD_SWEEP,fshift,lits,1,xx);CHKERRQ(ierr);
2471b1a666ecSBarry Smith     }
2472ce94432eSBarry Smith   } else SETERRQ(PetscObjectComm((PetscObject)matin),PETSC_ERR_SUP,"Parallel version of SOR requested not supported");
2473b1a666ecSBarry Smith 
24746bf464f9SBarry Smith   ierr = VecDestroy(&bb1);CHKERRQ(ierr);
2475b1a666ecSBarry Smith   PetscFunctionReturn(0);
2476b1a666ecSBarry Smith }
2477b1a666ecSBarry Smith 
2478bbead8a2SBarry Smith #undef __FUNCT__
247947f7623dSRémi Lacroix #define __FUNCT__ "MatGetColumnNorms_MPIBAIJ"
248047f7623dSRémi Lacroix PetscErrorCode MatGetColumnNorms_MPIBAIJ(Mat A,NormType type,PetscReal *norms)
248147f7623dSRémi Lacroix {
248247f7623dSRémi Lacroix   PetscErrorCode ierr;
248347f7623dSRémi Lacroix   Mat_MPIBAIJ    *aij = (Mat_MPIBAIJ*)A->data;
248447f7623dSRémi Lacroix   PetscInt       N,i,*garray = aij->garray;
248547f7623dSRémi Lacroix   PetscInt       ib,jb,bs = A->rmap->bs;
248647f7623dSRémi Lacroix   Mat_SeqBAIJ    *a_aij = (Mat_SeqBAIJ*) aij->A->data;
248747f7623dSRémi Lacroix   MatScalar      *a_val = a_aij->a;
248847f7623dSRémi Lacroix   Mat_SeqBAIJ    *b_aij = (Mat_SeqBAIJ*) aij->B->data;
248947f7623dSRémi Lacroix   MatScalar      *b_val = b_aij->a;
249047f7623dSRémi Lacroix   PetscReal      *work;
249147f7623dSRémi Lacroix 
249247f7623dSRémi Lacroix   PetscFunctionBegin;
249347f7623dSRémi Lacroix   ierr = MatGetSize(A,NULL,&N);CHKERRQ(ierr);
24941795a4d1SJed Brown   ierr = PetscCalloc1(N,&work);CHKERRQ(ierr);
249547f7623dSRémi Lacroix   if (type == NORM_2) {
249647f7623dSRémi Lacroix     for (i=a_aij->i[0]; i<a_aij->i[aij->A->rmap->n/bs]; i++) {
249747f7623dSRémi Lacroix       for (jb=0; jb<bs; jb++) {
249847f7623dSRémi Lacroix         for (ib=0; ib<bs; ib++) {
249947f7623dSRémi Lacroix           work[A->cmap->rstart + a_aij->j[i] * bs + jb] += PetscAbsScalar(*a_val * *a_val);
250047f7623dSRémi Lacroix           a_val++;
250147f7623dSRémi Lacroix         }
250247f7623dSRémi Lacroix       }
250347f7623dSRémi Lacroix     }
250447f7623dSRémi Lacroix     for (i=b_aij->i[0]; i<b_aij->i[aij->B->rmap->n/bs]; i++) {
250547f7623dSRémi Lacroix       for (jb=0; jb<bs; jb++) {
250647f7623dSRémi Lacroix         for (ib=0; ib<bs; ib++) {
250747f7623dSRémi Lacroix           work[garray[b_aij->j[i]] * bs + jb] += PetscAbsScalar(*b_val * *b_val);
250847f7623dSRémi Lacroix           b_val++;
250947f7623dSRémi Lacroix         }
251047f7623dSRémi Lacroix       }
251147f7623dSRémi Lacroix     }
251247f7623dSRémi Lacroix   } else if (type == NORM_1) {
251347f7623dSRémi Lacroix     for (i=a_aij->i[0]; i<a_aij->i[aij->A->rmap->n/bs]; i++) {
251447f7623dSRémi Lacroix       for (jb=0; jb<bs; jb++) {
251547f7623dSRémi Lacroix         for (ib=0; ib<bs; ib++) {
251647f7623dSRémi Lacroix           work[A->cmap->rstart + a_aij->j[i] * bs + jb] += PetscAbsScalar(*a_val);
251747f7623dSRémi Lacroix           a_val++;
251847f7623dSRémi Lacroix         }
251947f7623dSRémi Lacroix       }
252047f7623dSRémi Lacroix     }
252147f7623dSRémi Lacroix     for (i=b_aij->i[0]; i<b_aij->i[aij->B->rmap->n/bs]; i++) {
252247f7623dSRémi Lacroix       for (jb=0; jb<bs; jb++) {
252347f7623dSRémi Lacroix        for (ib=0; ib<bs; ib++) {
252447f7623dSRémi Lacroix           work[garray[b_aij->j[i]] * bs + jb] += PetscAbsScalar(*b_val);
252547f7623dSRémi Lacroix           b_val++;
252647f7623dSRémi Lacroix         }
252747f7623dSRémi Lacroix       }
252847f7623dSRémi Lacroix     }
252947f7623dSRémi Lacroix   } else if (type == NORM_INFINITY) {
253047f7623dSRémi Lacroix     for (i=a_aij->i[0]; i<a_aij->i[aij->A->rmap->n/bs]; i++) {
253147f7623dSRémi Lacroix       for (jb=0; jb<bs; jb++) {
253247f7623dSRémi Lacroix         for (ib=0; ib<bs; ib++) {
253347f7623dSRémi Lacroix           int col = A->cmap->rstart + a_aij->j[i] * bs + jb;
253447f7623dSRémi Lacroix           work[col] = PetscMax(PetscAbsScalar(*a_val), work[col]);
253547f7623dSRémi Lacroix           a_val++;
253647f7623dSRémi Lacroix         }
253747f7623dSRémi Lacroix       }
253847f7623dSRémi Lacroix     }
253947f7623dSRémi Lacroix     for (i=b_aij->i[0]; i<b_aij->i[aij->B->rmap->n/bs]; i++) {
254047f7623dSRémi Lacroix       for (jb=0; jb<bs; jb++) {
254147f7623dSRémi Lacroix         for (ib=0; ib<bs; ib++) {
254247f7623dSRémi Lacroix           int col = garray[b_aij->j[i]] * bs + jb;
254347f7623dSRémi Lacroix           work[col] = PetscMax(PetscAbsScalar(*b_val), work[col]);
254447f7623dSRémi Lacroix           b_val++;
254547f7623dSRémi Lacroix         }
254647f7623dSRémi Lacroix       }
254747f7623dSRémi Lacroix     }
254847f7623dSRémi Lacroix   } else SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ARG_WRONG,"Unknown NormType");
254947f7623dSRémi Lacroix   if (type == NORM_INFINITY) {
255047f7623dSRémi Lacroix     ierr = MPI_Allreduce(work,norms,N,MPIU_REAL,MPIU_MAX,PetscObjectComm((PetscObject)A));CHKERRQ(ierr);
255147f7623dSRémi Lacroix   } else {
255247f7623dSRémi Lacroix     ierr = MPI_Allreduce(work,norms,N,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)A));CHKERRQ(ierr);
255347f7623dSRémi Lacroix   }
255447f7623dSRémi Lacroix   ierr = PetscFree(work);CHKERRQ(ierr);
255547f7623dSRémi Lacroix   if (type == NORM_2) {
255647f7623dSRémi Lacroix     for (i=0; i<N; i++) norms[i] = PetscSqrtReal(norms[i]);
255747f7623dSRémi Lacroix   }
255847f7623dSRémi Lacroix   PetscFunctionReturn(0);
255947f7623dSRémi Lacroix }
256047f7623dSRémi Lacroix 
256147f7623dSRémi Lacroix #undef __FUNCT__
2562bbead8a2SBarry Smith #define __FUNCT__ "MatInvertBlockDiagonal_MPIBAIJ"
2563713ccfa9SJed Brown PetscErrorCode  MatInvertBlockDiagonal_MPIBAIJ(Mat A,const PetscScalar **values)
2564bbead8a2SBarry Smith {
2565bbead8a2SBarry Smith   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*) A->data;
2566bbead8a2SBarry Smith   PetscErrorCode ierr;
2567bbead8a2SBarry Smith 
2568bbead8a2SBarry Smith   PetscFunctionBegin;
2569bbead8a2SBarry Smith   ierr = MatInvertBlockDiagonal(a->A,values);CHKERRQ(ierr);
2570bbead8a2SBarry Smith   PetscFunctionReturn(0);
2571bbead8a2SBarry Smith }
2572bbead8a2SBarry Smith 
25738c7482ecSBarry Smith 
257479bdfe76SSatish Balay /* -------------------------------------------------------------------*/
25753964eb88SJed Brown static struct _MatOps MatOps_Values = {MatSetValues_MPIBAIJ,
2576cc2dc46cSBarry Smith                                        MatGetRow_MPIBAIJ,
2577cc2dc46cSBarry Smith                                        MatRestoreRow_MPIBAIJ,
2578cc2dc46cSBarry Smith                                        MatMult_MPIBAIJ,
257997304618SKris Buschelman                                 /* 4*/ MatMultAdd_MPIBAIJ,
25807c922b88SBarry Smith                                        MatMultTranspose_MPIBAIJ,
25817c922b88SBarry Smith                                        MatMultTransposeAdd_MPIBAIJ,
2582cc2dc46cSBarry Smith                                        0,
2583cc2dc46cSBarry Smith                                        0,
2584cc2dc46cSBarry Smith                                        0,
258597304618SKris Buschelman                                 /*10*/ 0,
2586cc2dc46cSBarry Smith                                        0,
2587cc2dc46cSBarry Smith                                        0,
2588b1a666ecSBarry Smith                                        MatSOR_MPIBAIJ,
2589cc2dc46cSBarry Smith                                        MatTranspose_MPIBAIJ,
259097304618SKris Buschelman                                 /*15*/ MatGetInfo_MPIBAIJ,
25917fc3c18eSBarry Smith                                        MatEqual_MPIBAIJ,
2592cc2dc46cSBarry Smith                                        MatGetDiagonal_MPIBAIJ,
2593cc2dc46cSBarry Smith                                        MatDiagonalScale_MPIBAIJ,
2594cc2dc46cSBarry Smith                                        MatNorm_MPIBAIJ,
259597304618SKris Buschelman                                 /*20*/ MatAssemblyBegin_MPIBAIJ,
2596cc2dc46cSBarry Smith                                        MatAssemblyEnd_MPIBAIJ,
2597cc2dc46cSBarry Smith                                        MatSetOption_MPIBAIJ,
2598cc2dc46cSBarry Smith                                        MatZeroEntries_MPIBAIJ,
2599d519adbfSMatthew Knepley                                 /*24*/ MatZeroRows_MPIBAIJ,
2600cc2dc46cSBarry Smith                                        0,
2601cc2dc46cSBarry Smith                                        0,
2602cc2dc46cSBarry Smith                                        0,
2603cc2dc46cSBarry Smith                                        0,
26044994cf47SJed Brown                                 /*29*/ MatSetUp_MPIBAIJ,
2605273d9f13SBarry Smith                                        0,
2606cc2dc46cSBarry Smith                                        0,
2607cc2dc46cSBarry Smith                                        0,
2608cc2dc46cSBarry Smith                                        0,
2609d519adbfSMatthew Knepley                                 /*34*/ MatDuplicate_MPIBAIJ,
2610cc2dc46cSBarry Smith                                        0,
2611cc2dc46cSBarry Smith                                        0,
2612cc2dc46cSBarry Smith                                        0,
2613cc2dc46cSBarry Smith                                        0,
2614d519adbfSMatthew Knepley                                 /*39*/ MatAXPY_MPIBAIJ,
2615cc2dc46cSBarry Smith                                        MatGetSubMatrices_MPIBAIJ,
2616cc2dc46cSBarry Smith                                        MatIncreaseOverlap_MPIBAIJ,
2617cc2dc46cSBarry Smith                                        MatGetValues_MPIBAIJ,
26183c896bc6SHong Zhang                                        MatCopy_MPIBAIJ,
2619d519adbfSMatthew Knepley                                 /*44*/ 0,
2620cc2dc46cSBarry Smith                                        MatScale_MPIBAIJ,
2621cc2dc46cSBarry Smith                                        0,
2622cc2dc46cSBarry Smith                                        0,
26236f0a72daSMatthew G. Knepley                                        MatZeroRowsColumns_MPIBAIJ,
2624f73d5cc4SBarry Smith                                 /*49*/ 0,
2625cc2dc46cSBarry Smith                                        0,
2626cc2dc46cSBarry Smith                                        0,
2627cc2dc46cSBarry Smith                                        0,
2628cc2dc46cSBarry Smith                                        0,
262993dfae19SHong Zhang                                 /*54*/ MatFDColoringCreate_MPIXAIJ,
2630cc2dc46cSBarry Smith                                        0,
2631cc2dc46cSBarry Smith                                        MatSetUnfactored_MPIBAIJ,
263282094794SBarry Smith                                        MatPermute_MPIBAIJ,
2633cc2dc46cSBarry Smith                                        MatSetValuesBlocked_MPIBAIJ,
2634d519adbfSMatthew Knepley                                 /*59*/ MatGetSubMatrix_MPIBAIJ,
2635f14a1c24SBarry Smith                                        MatDestroy_MPIBAIJ,
2636f14a1c24SBarry Smith                                        MatView_MPIBAIJ,
2637357abbc8SBarry Smith                                        0,
26387843d17aSBarry Smith                                        0,
2639d519adbfSMatthew Knepley                                 /*64*/ 0,
26407843d17aSBarry Smith                                        0,
26417843d17aSBarry Smith                                        0,
26427843d17aSBarry Smith                                        0,
26437843d17aSBarry Smith                                        0,
2644d519adbfSMatthew Knepley                                 /*69*/ MatGetRowMaxAbs_MPIBAIJ,
26457843d17aSBarry Smith                                        0,
264697304618SKris Buschelman                                        0,
264797304618SKris Buschelman                                        0,
264897304618SKris Buschelman                                        0,
2649d519adbfSMatthew Knepley                                 /*74*/ 0,
2650f6d58c54SBarry Smith                                        MatFDColoringApply_BAIJ,
265197304618SKris Buschelman                                        0,
265297304618SKris Buschelman                                        0,
265397304618SKris Buschelman                                        0,
2654d519adbfSMatthew Knepley                                 /*79*/ 0,
265597304618SKris Buschelman                                        0,
265697304618SKris Buschelman                                        0,
265797304618SKris Buschelman                                        0,
26585bba2384SShri Abhyankar                                        MatLoad_MPIBAIJ,
2659d519adbfSMatthew Knepley                                 /*84*/ 0,
2660865e5f61SKris Buschelman                                        0,
2661865e5f61SKris Buschelman                                        0,
2662865e5f61SKris Buschelman                                        0,
2663865e5f61SKris Buschelman                                        0,
2664d519adbfSMatthew Knepley                                 /*89*/ 0,
2665865e5f61SKris Buschelman                                        0,
2666865e5f61SKris Buschelman                                        0,
2667865e5f61SKris Buschelman                                        0,
2668865e5f61SKris Buschelman                                        0,
2669d519adbfSMatthew Knepley                                 /*94*/ 0,
2670865e5f61SKris Buschelman                                        0,
2671865e5f61SKris Buschelman                                        0,
267299cafbc1SBarry Smith                                        0,
267399cafbc1SBarry Smith                                        0,
2674d519adbfSMatthew Knepley                                 /*99*/ 0,
267599cafbc1SBarry Smith                                        0,
267699cafbc1SBarry Smith                                        0,
267799cafbc1SBarry Smith                                        0,
267899cafbc1SBarry Smith                                        0,
2679d519adbfSMatthew Knepley                                 /*104*/0,
268099cafbc1SBarry Smith                                        MatRealPart_MPIBAIJ,
26818c7482ecSBarry Smith                                        MatImaginaryPart_MPIBAIJ,
26828c7482ecSBarry Smith                                        0,
26838c7482ecSBarry Smith                                        0,
2684d519adbfSMatthew Knepley                                 /*109*/0,
26858c7482ecSBarry Smith                                        0,
26868c7482ecSBarry Smith                                        0,
26878c7482ecSBarry Smith                                        0,
26888c7482ecSBarry Smith                                        0,
2689d1adec66SJed Brown                                 /*114*/MatGetSeqNonzeroStructure_MPIBAIJ,
26908c7482ecSBarry Smith                                        0,
26914683f7a4SShri Abhyankar                                        MatGetGhosts_MPIBAIJ,
26924683f7a4SShri Abhyankar                                        0,
26934683f7a4SShri Abhyankar                                        0,
26944683f7a4SShri Abhyankar                                 /*119*/0,
26954683f7a4SShri Abhyankar                                        0,
26964683f7a4SShri Abhyankar                                        0,
2697bbead8a2SBarry Smith                                        0,
2698e8271787SHong Zhang                                        MatGetMultiProcBlock_MPIBAIJ,
2699bbead8a2SBarry Smith                                 /*124*/0,
270047f7623dSRémi Lacroix                                        MatGetColumnNorms_MPIBAIJ,
27013964eb88SJed Brown                                        MatInvertBlockDiagonal_MPIBAIJ,
27023964eb88SJed Brown                                        0,
27033964eb88SJed Brown                                        0,
27043964eb88SJed Brown                                /*129*/ 0,
27053964eb88SJed Brown                                        0,
27063964eb88SJed Brown                                        0,
27073964eb88SJed Brown                                        0,
27083964eb88SJed Brown                                        0,
27093964eb88SJed Brown                                /*134*/ 0,
27103964eb88SJed Brown                                        0,
27113964eb88SJed Brown                                        0,
27123964eb88SJed Brown                                        0,
27133964eb88SJed Brown                                        0,
27143964eb88SJed Brown                                /*139*/ 0,
2715f9426fe0SMark Adams                                        0,
27161919a2e2SJed Brown                                        0,
2717f86b9fbaSHong Zhang                                        MatFDColoringSetUp_MPIXAIJ
27188c7482ecSBarry Smith };
271979bdfe76SSatish Balay 
27204a2ae208SSatish Balay #undef __FUNCT__
27214a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonalBlock_MPIBAIJ"
272211bd1e4dSLisandro Dalcin PetscErrorCode  MatGetDiagonalBlock_MPIBAIJ(Mat A,Mat *a)
27235ef9f2a5SBarry Smith {
27245ef9f2a5SBarry Smith   PetscFunctionBegin;
27255ef9f2a5SBarry Smith   *a = ((Mat_MPIBAIJ*)A->data)->A;
27265ef9f2a5SBarry Smith   PetscFunctionReturn(0);
27275ef9f2a5SBarry Smith }
272879bdfe76SSatish Balay 
27298cc058d9SJed Brown PETSC_EXTERN PetscErrorCode MatConvert_MPIBAIJ_MPISBAIJ(Mat, MatType,MatReuse,Mat*);
2730d94109b8SHong Zhang 
2731aac34f13SBarry Smith #undef __FUNCT__
2732aac34f13SBarry Smith #define __FUNCT__ "MatMPIBAIJSetPreallocationCSR_MPIBAIJ"
2733cf12db73SBarry Smith PetscErrorCode MatMPIBAIJSetPreallocationCSR_MPIBAIJ(Mat B,PetscInt bs,const PetscInt ii[],const PetscInt jj[],const PetscScalar V[])
2734aac34f13SBarry Smith {
2735b8d659d7SLisandro Dalcin   PetscInt       m,rstart,cstart,cend;
2736b8d659d7SLisandro Dalcin   PetscInt       i,j,d,nz,nz_max=0,*d_nnz=0,*o_nnz=0;
2737b8d659d7SLisandro Dalcin   const PetscInt *JJ    =0;
2738b8d659d7SLisandro Dalcin   PetscScalar    *values=0;
2739d47bf9aaSJed Brown   PetscBool      roworiented = ((Mat_MPIBAIJ*)B->data)->roworiented;
2740aac34f13SBarry Smith   PetscErrorCode ierr;
2741aac34f13SBarry Smith 
2742aac34f13SBarry Smith   PetscFunctionBegin;
274326283091SBarry Smith   ierr   = PetscLayoutSetBlockSize(B->rmap,bs);CHKERRQ(ierr);
274426283091SBarry Smith   ierr   = PetscLayoutSetBlockSize(B->cmap,bs);CHKERRQ(ierr);
274526283091SBarry Smith   ierr   = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr);
274626283091SBarry Smith   ierr   = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr);
2747e02043d6SBarry Smith   ierr   = PetscLayoutGetBlockSize(B->rmap,&bs);CHKERRQ(ierr);
2748d0f46423SBarry Smith   m      = B->rmap->n/bs;
2749d0f46423SBarry Smith   rstart = B->rmap->rstart/bs;
2750d0f46423SBarry Smith   cstart = B->cmap->rstart/bs;
2751d0f46423SBarry Smith   cend   = B->cmap->rend/bs;
2752b8d659d7SLisandro Dalcin 
2753e32f2f54SBarry Smith   if (ii[0]) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"ii[0] must be 0 but it is %D",ii[0]);
2754dcca6d9dSJed Brown   ierr = PetscMalloc2(m,&d_nnz,m,&o_nnz);CHKERRQ(ierr);
2755aac34f13SBarry Smith   for (i=0; i<m; i++) {
2756cf12db73SBarry Smith     nz = ii[i+1] - ii[i];
2757e32f2f54SBarry Smith     if (nz < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Local row %D has a negative number of columns %D",i,nz);
2758b8d659d7SLisandro Dalcin     nz_max = PetscMax(nz_max,nz);
2759cf12db73SBarry Smith     JJ     = jj + ii[i];
2760b8d659d7SLisandro Dalcin     for (j=0; j<nz; j++) {
2761aac34f13SBarry Smith       if (*JJ >= cstart) break;
2762aac34f13SBarry Smith       JJ++;
2763aac34f13SBarry Smith     }
2764aac34f13SBarry Smith     d = 0;
2765b8d659d7SLisandro Dalcin     for (; j<nz; j++) {
2766aac34f13SBarry Smith       if (*JJ++ >= cend) break;
2767aac34f13SBarry Smith       d++;
2768aac34f13SBarry Smith     }
2769aac34f13SBarry Smith     d_nnz[i] = d;
2770b8d659d7SLisandro Dalcin     o_nnz[i] = nz - d;
2771aac34f13SBarry Smith   }
2772aac34f13SBarry Smith   ierr = MatMPIBAIJSetPreallocation(B,bs,0,d_nnz,0,o_nnz);CHKERRQ(ierr);
2773fca92195SBarry Smith   ierr = PetscFree2(d_nnz,o_nnz);CHKERRQ(ierr);
2774aac34f13SBarry Smith 
2775b8d659d7SLisandro Dalcin   values = (PetscScalar*)V;
2776b8d659d7SLisandro Dalcin   if (!values) {
2777785e854fSJed Brown     ierr = PetscMalloc1(bs*bs*nz_max,&values);CHKERRQ(ierr);
2778b8d659d7SLisandro Dalcin     ierr = PetscMemzero(values,bs*bs*nz_max*sizeof(PetscScalar));CHKERRQ(ierr);
2779b8d659d7SLisandro Dalcin   }
2780b8d659d7SLisandro Dalcin   for (i=0; i<m; i++) {
2781b8d659d7SLisandro Dalcin     PetscInt          row    = i + rstart;
2782cf12db73SBarry Smith     PetscInt          ncols  = ii[i+1] - ii[i];
2783cf12db73SBarry Smith     const PetscInt    *icols = jj + ii[i];
27843adadaf3SJed Brown     if (!roworiented) {         /* block ordering matches the non-nested layout of MatSetValues so we can insert entire rows */
2785cf12db73SBarry Smith       const PetscScalar *svals = values + (V ? (bs*bs*ii[i]) : 0);
2786b8d659d7SLisandro Dalcin       ierr = MatSetValuesBlocked_MPIBAIJ(B,1,&row,ncols,icols,svals,INSERT_VALUES);CHKERRQ(ierr);
27873adadaf3SJed Brown     } else {                    /* block ordering does not match so we can only insert one block at a time. */
27883adadaf3SJed Brown       PetscInt j;
27893adadaf3SJed Brown       for (j=0; j<ncols; j++) {
27903adadaf3SJed Brown         const PetscScalar *svals = values + (V ? (bs*bs*(ii[i]+j)) : 0);
27913adadaf3SJed Brown         ierr = MatSetValuesBlocked_MPIBAIJ(B,1,&row,1,&icols[j],svals,INSERT_VALUES);CHKERRQ(ierr);
27923adadaf3SJed Brown       }
27933adadaf3SJed Brown     }
2794aac34f13SBarry Smith   }
2795aac34f13SBarry Smith 
2796b8d659d7SLisandro Dalcin   if (!V) { ierr = PetscFree(values);CHKERRQ(ierr); }
2797aac34f13SBarry Smith   ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
2798aac34f13SBarry Smith   ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
27997827cd58SJed Brown   ierr = MatSetOption(B,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_TRUE);CHKERRQ(ierr);
2800aac34f13SBarry Smith   PetscFunctionReturn(0);
2801aac34f13SBarry Smith }
2802aac34f13SBarry Smith 
2803aac34f13SBarry Smith #undef __FUNCT__
2804aac34f13SBarry Smith #define __FUNCT__ "MatMPIBAIJSetPreallocationCSR"
2805aac34f13SBarry Smith /*@C
2806dfb205c3SBarry Smith    MatMPIBAIJSetPreallocationCSR - Allocates memory for a sparse parallel matrix in BAIJ format
2807aac34f13SBarry Smith    (the default parallel PETSc format).
2808aac34f13SBarry Smith 
2809aac34f13SBarry Smith    Collective on MPI_Comm
2810aac34f13SBarry Smith 
2811aac34f13SBarry Smith    Input Parameters:
28121c4f3114SJed Brown +  B - the matrix
2813dfb205c3SBarry Smith .  bs - the block size
2814aac34f13SBarry Smith .  i - the indices into j for the start of each local row (starts with zero)
2815aac34f13SBarry Smith .  j - the column indices for each local row (starts with zero) these must be sorted for each row
2816aac34f13SBarry Smith -  v - optional values in the matrix
2817aac34f13SBarry Smith 
2818aac34f13SBarry Smith    Level: developer
2819aac34f13SBarry Smith 
28203adadaf3SJed Brown    Notes: The order of the entries in values is specified by the MatOption MAT_ROW_ORIENTED.  For example, C programs
28213adadaf3SJed Brown    may want to use the default MAT_ROW_ORIENTED=PETSC_TRUE and use an array v[nnz][bs][bs] where the second index is
28223adadaf3SJed Brown    over rows within a block and the last index is over columns within a block row.  Fortran programs will likely set
28233adadaf3SJed Brown    MAT_ROW_ORIENTED=PETSC_FALSE and use a Fortran array v(bs,bs,nnz) in which the first index is over rows within a
28243adadaf3SJed Brown    block column and the second index is over columns within a block.
28253adadaf3SJed Brown 
2826aac34f13SBarry Smith .keywords: matrix, aij, compressed row, sparse, parallel
2827aac34f13SBarry Smith 
28283adadaf3SJed Brown .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatMPIBAIJSetPreallocation(), MatCreateAIJ(), MPIAIJ, MatCreateMPIBAIJWithArrays(), MPIBAIJ
2829aac34f13SBarry Smith @*/
28307087cfbeSBarry Smith PetscErrorCode  MatMPIBAIJSetPreallocationCSR(Mat B,PetscInt bs,const PetscInt i[],const PetscInt j[], const PetscScalar v[])
2831aac34f13SBarry Smith {
28324ac538c5SBarry Smith   PetscErrorCode ierr;
2833aac34f13SBarry Smith 
2834aac34f13SBarry Smith   PetscFunctionBegin;
28356ba663aaSJed Brown   PetscValidHeaderSpecific(B,MAT_CLASSID,1);
28366ba663aaSJed Brown   PetscValidType(B,1);
28376ba663aaSJed Brown   PetscValidLogicalCollectiveInt(B,bs,2);
28384ac538c5SBarry Smith   ierr = PetscTryMethod(B,"MatMPIBAIJSetPreallocationCSR_C",(Mat,PetscInt,const PetscInt[],const PetscInt[],const PetscScalar[]),(B,bs,i,j,v));CHKERRQ(ierr);
2839aac34f13SBarry Smith   PetscFunctionReturn(0);
2840aac34f13SBarry Smith }
2841aac34f13SBarry Smith 
28424a2ae208SSatish Balay #undef __FUNCT__
2843a23d5eceSKris Buschelman #define __FUNCT__ "MatMPIBAIJSetPreallocation_MPIBAIJ"
2844b2573a8aSBarry Smith PetscErrorCode  MatMPIBAIJSetPreallocation_MPIBAIJ(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt *d_nnz,PetscInt o_nz,const PetscInt *o_nnz)
2845a23d5eceSKris Buschelman {
2846a23d5eceSKris Buschelman   Mat_MPIBAIJ    *b;
2847dfbe8321SBarry Smith   PetscErrorCode ierr;
2848535b19f3SBarry Smith   PetscInt       i;
2849a23d5eceSKris Buschelman 
2850a23d5eceSKris Buschelman   PetscFunctionBegin;
285133d57670SJed Brown   ierr = MatSetBlockSize(B,PetscAbs(bs));CHKERRQ(ierr);
285226283091SBarry Smith   ierr = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr);
285326283091SBarry Smith   ierr = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr);
2854e02043d6SBarry Smith   ierr = PetscLayoutGetBlockSize(B->rmap,&bs);CHKERRQ(ierr);
2855899cda47SBarry Smith 
2856a23d5eceSKris Buschelman   if (d_nnz) {
2857d0f46423SBarry Smith     for (i=0; i<B->rmap->n/bs; i++) {
2858e32f2f54SBarry Smith       if (d_nnz[i] < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"d_nnz cannot be less than -1: local row %D value %D",i,d_nnz[i]);
2859a23d5eceSKris Buschelman     }
2860a23d5eceSKris Buschelman   }
2861a23d5eceSKris Buschelman   if (o_nnz) {
2862d0f46423SBarry Smith     for (i=0; i<B->rmap->n/bs; i++) {
2863e32f2f54SBarry Smith       if (o_nnz[i] < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"o_nnz cannot be less than -1: local row %D value %D",i,o_nnz[i]);
2864a23d5eceSKris Buschelman     }
2865a23d5eceSKris Buschelman   }
2866a23d5eceSKris Buschelman 
2867a23d5eceSKris Buschelman   b      = (Mat_MPIBAIJ*)B->data;
2868a23d5eceSKris Buschelman   b->bs2 = bs*bs;
2869d0f46423SBarry Smith   b->mbs = B->rmap->n/bs;
2870d0f46423SBarry Smith   b->nbs = B->cmap->n/bs;
2871d0f46423SBarry Smith   b->Mbs = B->rmap->N/bs;
2872d0f46423SBarry Smith   b->Nbs = B->cmap->N/bs;
2873a23d5eceSKris Buschelman 
2874a23d5eceSKris Buschelman   for (i=0; i<=b->size; i++) {
2875d0f46423SBarry Smith     b->rangebs[i] = B->rmap->range[i]/bs;
2876a23d5eceSKris Buschelman   }
2877d0f46423SBarry Smith   b->rstartbs = B->rmap->rstart/bs;
2878d0f46423SBarry Smith   b->rendbs   = B->rmap->rend/bs;
2879d0f46423SBarry Smith   b->cstartbs = B->cmap->rstart/bs;
2880d0f46423SBarry Smith   b->cendbs   = B->cmap->rend/bs;
2881a23d5eceSKris Buschelman 
2882526dfc15SBarry Smith   if (!B->preallocated) {
2883f69a0ea3SMatthew Knepley     ierr = MatCreate(PETSC_COMM_SELF,&b->A);CHKERRQ(ierr);
2884d0f46423SBarry Smith     ierr = MatSetSizes(b->A,B->rmap->n,B->cmap->n,B->rmap->n,B->cmap->n);CHKERRQ(ierr);
28859c097c71SKris Buschelman     ierr = MatSetType(b->A,MATSEQBAIJ);CHKERRQ(ierr);
28863bb1ff40SBarry Smith     ierr = PetscLogObjectParent((PetscObject)B,(PetscObject)b->A);CHKERRQ(ierr);
2887f69a0ea3SMatthew Knepley     ierr = MatCreate(PETSC_COMM_SELF,&b->B);CHKERRQ(ierr);
2888d0f46423SBarry Smith     ierr = MatSetSizes(b->B,B->rmap->n,B->cmap->N,B->rmap->n,B->cmap->N);CHKERRQ(ierr);
28899c097c71SKris Buschelman     ierr = MatSetType(b->B,MATSEQBAIJ);CHKERRQ(ierr);
28903bb1ff40SBarry Smith     ierr = PetscLogObjectParent((PetscObject)B,(PetscObject)b->B);CHKERRQ(ierr);
2891ce94432eSBarry Smith     ierr = MatStashCreate_Private(PetscObjectComm((PetscObject)B),bs,&B->bstash);CHKERRQ(ierr);
2892526dfc15SBarry Smith   }
2893a23d5eceSKris Buschelman 
2894526dfc15SBarry Smith   ierr = MatSeqBAIJSetPreallocation(b->A,bs,d_nz,d_nnz);CHKERRQ(ierr);
2895526dfc15SBarry Smith   ierr = MatSeqBAIJSetPreallocation(b->B,bs,o_nz,o_nnz);CHKERRQ(ierr);
2896526dfc15SBarry Smith   B->preallocated = PETSC_TRUE;
2897a23d5eceSKris Buschelman   PetscFunctionReturn(0);
2898a23d5eceSKris Buschelman }
2899a23d5eceSKris Buschelman 
29007087cfbeSBarry Smith extern PetscErrorCode  MatDiagonalScaleLocal_MPIBAIJ(Mat,Vec);
29017087cfbeSBarry Smith extern PetscErrorCode  MatSetHashTableFactor_MPIBAIJ(Mat,PetscReal);
29025bf65638SKris Buschelman 
290382094794SBarry Smith #undef __FUNCT__
290482094794SBarry Smith #define __FUNCT__ "MatConvert_MPIBAIJ_MPIAdj"
29058cc058d9SJed Brown PETSC_EXTERN PetscErrorCode MatConvert_MPIBAIJ_MPIAdj(Mat B, MatType newtype,MatReuse reuse,Mat *adj)
290682094794SBarry Smith {
290782094794SBarry Smith   Mat_MPIBAIJ    *b = (Mat_MPIBAIJ*)B->data;
290882094794SBarry Smith   PetscErrorCode ierr;
290982094794SBarry Smith   Mat_SeqBAIJ    *d  = (Mat_SeqBAIJ*) b->A->data,*o = (Mat_SeqBAIJ*) b->B->data;
291082094794SBarry Smith   PetscInt       M   = B->rmap->n/B->rmap->bs,i,*ii,*jj,cnt,j,k,rstart = B->rmap->rstart/B->rmap->bs;
291182094794SBarry Smith   const PetscInt *id = d->i, *jd = d->j, *io = o->i, *jo = o->j, *garray = b->garray;
291282094794SBarry Smith 
291382094794SBarry Smith   PetscFunctionBegin;
2914785e854fSJed Brown   ierr  = PetscMalloc1((M+1),&ii);CHKERRQ(ierr);
291582094794SBarry Smith   ii[0] = 0;
291682094794SBarry Smith   for (i=0; i<M; i++) {
2917e32f2f54SBarry Smith     if ((id[i+1] - id[i]) < 0) SETERRQ3(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Indices wrong %D %D %D",i,id[i],id[i+1]);
2918e32f2f54SBarry Smith     if ((io[i+1] - io[i]) < 0) SETERRQ3(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Indices wrong %D %D %D",i,io[i],io[i+1]);
291982094794SBarry Smith     ii[i+1] = ii[i] + id[i+1] - id[i] + io[i+1] - io[i];
29205ee9ba1cSJed Brown     /* remove one from count of matrix has diagonal */
29215ee9ba1cSJed Brown     for (j=id[i]; j<id[i+1]; j++) {
29225ee9ba1cSJed Brown       if (jd[j] == i) {ii[i+1]--;break;}
29235ee9ba1cSJed Brown     }
292482094794SBarry Smith   }
2925785e854fSJed Brown   ierr = PetscMalloc1(ii[M],&jj);CHKERRQ(ierr);
292682094794SBarry Smith   cnt  = 0;
292782094794SBarry Smith   for (i=0; i<M; i++) {
292882094794SBarry Smith     for (j=io[i]; j<io[i+1]; j++) {
292982094794SBarry Smith       if (garray[jo[j]] > rstart) break;
293082094794SBarry Smith       jj[cnt++] = garray[jo[j]];
293182094794SBarry Smith     }
293282094794SBarry Smith     for (k=id[i]; k<id[i+1]; k++) {
29335ee9ba1cSJed Brown       if (jd[k] != i) {
293482094794SBarry Smith         jj[cnt++] = rstart + jd[k];
293582094794SBarry Smith       }
29365ee9ba1cSJed Brown     }
293782094794SBarry Smith     for (; j<io[i+1]; j++) {
293882094794SBarry Smith       jj[cnt++] = garray[jo[j]];
293982094794SBarry Smith     }
294082094794SBarry Smith   }
2941ce94432eSBarry Smith   ierr = MatCreateMPIAdj(PetscObjectComm((PetscObject)B),M,B->cmap->N/B->rmap->bs,ii,jj,NULL,adj);CHKERRQ(ierr);
294282094794SBarry Smith   PetscFunctionReturn(0);
294382094794SBarry Smith }
294482094794SBarry Smith 
2945c6db04a5SJed Brown #include <../src/mat/impls/aij/mpi/mpiaij.h>
294662471d69SBarry Smith 
29478cc058d9SJed Brown PETSC_EXTERN PetscErrorCode MatConvert_SeqBAIJ_SeqAIJ(Mat,MatType,MatReuse,Mat*);
2948b2573a8aSBarry Smith 
294962471d69SBarry Smith #undef __FUNCT__
295062471d69SBarry Smith #define __FUNCT__ "MatConvert_MPIBAIJ_MPIAIJ"
29518cc058d9SJed Brown PETSC_EXTERN PetscErrorCode MatConvert_MPIBAIJ_MPIAIJ(Mat A,MatType newtype,MatReuse reuse,Mat *newmat)
295262471d69SBarry Smith {
295362471d69SBarry Smith   PetscErrorCode ierr;
295462471d69SBarry Smith   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)A->data;
295562471d69SBarry Smith   Mat            B;
295685a69837SSatish Balay   Mat_MPIAIJ     *b;
295762471d69SBarry Smith 
295862471d69SBarry Smith   PetscFunctionBegin;
2959ce94432eSBarry Smith   if (!A->assembled) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_SUP,"Matrix must be assembled");
296062471d69SBarry Smith 
2961ce94432eSBarry Smith   ierr = MatCreate(PetscObjectComm((PetscObject)A),&B);CHKERRQ(ierr);
296262471d69SBarry Smith   ierr = MatSetSizes(B,A->rmap->n,A->cmap->n,A->rmap->N,A->cmap->N);CHKERRQ(ierr);
29636d0a4a0eSHong Zhang   ierr = MatSetType(B,MATMPIAIJ);CHKERRQ(ierr);
29640298fd71SBarry Smith   ierr = MatSeqAIJSetPreallocation(B,0,NULL);CHKERRQ(ierr);
29650298fd71SBarry Smith   ierr = MatMPIAIJSetPreallocation(B,0,NULL,0,NULL);CHKERRQ(ierr);
296662471d69SBarry Smith   b    = (Mat_MPIAIJ*) B->data;
296762471d69SBarry Smith 
29686bf464f9SBarry Smith   ierr = MatDestroy(&b->A);CHKERRQ(ierr);
29696bf464f9SBarry Smith   ierr = MatDestroy(&b->B);CHKERRQ(ierr);
2970ab9863d7SBarry Smith   ierr = MatDisAssemble_MPIBAIJ(A);CHKERRQ(ierr);
297162471d69SBarry Smith   ierr = MatConvert_SeqBAIJ_SeqAIJ(a->A, MATSEQAIJ, MAT_INITIAL_MATRIX, &b->A);CHKERRQ(ierr);
297262471d69SBarry Smith   ierr = MatConvert_SeqBAIJ_SeqAIJ(a->B, MATSEQAIJ, MAT_INITIAL_MATRIX, &b->B);CHKERRQ(ierr);
297362471d69SBarry Smith   ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
297462471d69SBarry Smith   ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
29756a719282SBarry Smith   ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
29766a719282SBarry Smith   ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
297762471d69SBarry Smith   if (reuse == MAT_REUSE_MATRIX) {
297862471d69SBarry Smith     ierr = MatHeaderReplace(A,B);CHKERRQ(ierr);
297962471d69SBarry Smith   } else {
298062471d69SBarry Smith    *newmat = B;
298162471d69SBarry Smith   }
298262471d69SBarry Smith   PetscFunctionReturn(0);
298362471d69SBarry Smith }
298462471d69SBarry Smith 
2985450b117fSShri Abhyankar #if defined(PETSC_HAVE_MUMPS)
29868cc058d9SJed Brown PETSC_EXTERN PetscErrorCode MatGetFactor_baij_mumps(Mat,MatFactorType,Mat*);
2987450b117fSShri Abhyankar #endif
2988450b117fSShri Abhyankar 
29890bad9183SKris Buschelman /*MC
2990fafad747SKris Buschelman    MATMPIBAIJ - MATMPIBAIJ = "mpibaij" - A matrix type to be used for distributed block sparse matrices.
29910bad9183SKris Buschelman 
29920bad9183SKris Buschelman    Options Database Keys:
29938c07d4e3SBarry Smith + -mat_type mpibaij - sets the matrix type to "mpibaij" during a call to MatSetFromOptions()
29948c07d4e3SBarry Smith . -mat_block_size <bs> - set the blocksize used to store the matrix
29958c07d4e3SBarry Smith - -mat_use_hash_table <fact>
29960bad9183SKris Buschelman 
29970bad9183SKris Buschelman   Level: beginner
29980bad9183SKris Buschelman 
29990bad9183SKris Buschelman .seealso: MatCreateMPIBAIJ
30000bad9183SKris Buschelman M*/
30010bad9183SKris Buschelman 
30028cc058d9SJed Brown PETSC_EXTERN PetscErrorCode MatConvert_MPIBAIJ_MPIBSTRM(Mat,MatType,MatReuse,Mat*);
3003c0cdd4a1SDahai Guo 
3004a23d5eceSKris Buschelman #undef __FUNCT__
30054a2ae208SSatish Balay #define __FUNCT__ "MatCreate_MPIBAIJ"
30068cc058d9SJed Brown PETSC_EXTERN PetscErrorCode MatCreate_MPIBAIJ(Mat B)
3007273d9f13SBarry Smith {
3008273d9f13SBarry Smith   Mat_MPIBAIJ    *b;
3009dfbe8321SBarry Smith   PetscErrorCode ierr;
3010ace3abfcSBarry Smith   PetscBool      flg;
3011273d9f13SBarry Smith 
3012273d9f13SBarry Smith   PetscFunctionBegin;
3013b00a9115SJed Brown   ierr    = PetscNewLog(B,&b);CHKERRQ(ierr);
301482502324SSatish Balay   B->data = (void*)b;
301582502324SSatish Balay 
3016273d9f13SBarry Smith   ierr         = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr);
3017273d9f13SBarry Smith   B->assembled = PETSC_FALSE;
3018273d9f13SBarry Smith 
3019273d9f13SBarry Smith   B->insertmode = NOT_SET_VALUES;
3020ce94432eSBarry Smith   ierr          = MPI_Comm_rank(PetscObjectComm((PetscObject)B),&b->rank);CHKERRQ(ierr);
3021ce94432eSBarry Smith   ierr          = MPI_Comm_size(PetscObjectComm((PetscObject)B),&b->size);CHKERRQ(ierr);
3022273d9f13SBarry Smith 
3023273d9f13SBarry Smith   /* build local table of row and column ownerships */
3024785e854fSJed Brown   ierr = PetscMalloc1((b->size+1),&b->rangebs);CHKERRQ(ierr);
3025273d9f13SBarry Smith 
3026273d9f13SBarry Smith   /* build cache for off array entries formed */
3027ce94432eSBarry Smith   ierr = MatStashCreate_Private(PetscObjectComm((PetscObject)B),1,&B->stash);CHKERRQ(ierr);
302826fbe8dcSKarl Rupp 
3029273d9f13SBarry Smith   b->donotstash  = PETSC_FALSE;
30300298fd71SBarry Smith   b->colmap      = NULL;
30310298fd71SBarry Smith   b->garray      = NULL;
3032273d9f13SBarry Smith   b->roworiented = PETSC_TRUE;
3033273d9f13SBarry Smith 
3034273d9f13SBarry Smith   /* stuff used in block assembly */
3035273d9f13SBarry Smith   b->barray = 0;
3036273d9f13SBarry Smith 
3037273d9f13SBarry Smith   /* stuff used for matrix vector multiply */
3038273d9f13SBarry Smith   b->lvec  = 0;
3039273d9f13SBarry Smith   b->Mvctx = 0;
3040273d9f13SBarry Smith 
3041273d9f13SBarry Smith   /* stuff for MatGetRow() */
3042273d9f13SBarry Smith   b->rowindices   = 0;
3043273d9f13SBarry Smith   b->rowvalues    = 0;
3044273d9f13SBarry Smith   b->getrowactive = PETSC_FALSE;
3045273d9f13SBarry Smith 
3046273d9f13SBarry Smith   /* hash table stuff */
3047273d9f13SBarry Smith   b->ht           = 0;
3048273d9f13SBarry Smith   b->hd           = 0;
3049273d9f13SBarry Smith   b->ht_size      = 0;
3050273d9f13SBarry Smith   b->ht_flag      = PETSC_FALSE;
3051273d9f13SBarry Smith   b->ht_fact      = 0;
3052273d9f13SBarry Smith   b->ht_total_ct  = 0;
3053273d9f13SBarry Smith   b->ht_insert_ct = 0;
3054273d9f13SBarry Smith 
30557a868f3eSHong Zhang   /* stuff for MatGetSubMatrices_MPIBAIJ_local() */
30567a868f3eSHong Zhang   b->ijonly = PETSC_FALSE;
30577a868f3eSHong Zhang 
3058ce94432eSBarry Smith   ierr = PetscOptionsBegin(PetscObjectComm((PetscObject)B),NULL,"Options for loading MPIBAIJ matrix 1","Mat");CHKERRQ(ierr);
30590298fd71SBarry Smith   ierr = PetscOptionsBool("-mat_use_hash_table","Use hash table to save memory in constructing matrix","MatSetOption",PETSC_FALSE,&flg,NULL);CHKERRQ(ierr);
3060273d9f13SBarry Smith   if (flg) {
3061f6275e2eSBarry Smith     PetscReal fact = 1.39;
30624e0d8c25SBarry Smith     ierr = MatSetOption(B,MAT_USE_HASH_TABLE,PETSC_TRUE);CHKERRQ(ierr);
30630298fd71SBarry Smith     ierr = PetscOptionsReal("-mat_use_hash_table","Use hash table factor","MatMPIBAIJSetHashTableFactor",fact,&fact,NULL);CHKERRQ(ierr);
3064273d9f13SBarry Smith     if (fact <= 1.0) fact = 1.39;
3065273d9f13SBarry Smith     ierr = MatMPIBAIJSetHashTableFactor(B,fact);CHKERRQ(ierr);
30661e2582c4SBarry Smith     ierr = PetscInfo1(B,"Hash table Factor used %5.2f\n",fact);CHKERRQ(ierr);
3067273d9f13SBarry Smith   }
30688c07d4e3SBarry Smith   ierr = PetscOptionsEnd();CHKERRQ(ierr);
30698c07d4e3SBarry Smith 
3070450b117fSShri Abhyankar #if defined(PETSC_HAVE_MUMPS)
3071bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatGetFactor_mumps_C",MatGetFactor_baij_mumps);CHKERRQ(ierr);
3072450b117fSShri Abhyankar #endif
3073bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpibaij_mpiadj_C",MatConvert_MPIBAIJ_MPIAdj);CHKERRQ(ierr);
3074bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpibaij_mpiaij_C",MatConvert_MPIBAIJ_MPIAIJ);CHKERRQ(ierr);
3075bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpibaij_mpisbaij_C",MatConvert_MPIBAIJ_MPISBAIJ);CHKERRQ(ierr);
3076bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatStoreValues_C",MatStoreValues_MPIBAIJ);CHKERRQ(ierr);
3077bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatRetrieveValues_C",MatRetrieveValues_MPIBAIJ);CHKERRQ(ierr);
3078bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatGetDiagonalBlock_C",MatGetDiagonalBlock_MPIBAIJ);CHKERRQ(ierr);
3079bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatMPIBAIJSetPreallocation_C",MatMPIBAIJSetPreallocation_MPIBAIJ);CHKERRQ(ierr);
3080bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatMPIBAIJSetPreallocationCSR_C",MatMPIBAIJSetPreallocationCSR_MPIBAIJ);CHKERRQ(ierr);
3081bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatDiagonalScaleLocal_C",MatDiagonalScaleLocal_MPIBAIJ);CHKERRQ(ierr);
3082bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatSetHashTableFactor_C",MatSetHashTableFactor_MPIBAIJ);CHKERRQ(ierr);
3083bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpibaij_mpibstrm_C",MatConvert_MPIBAIJ_MPIBSTRM);CHKERRQ(ierr);
308417667f90SBarry Smith   ierr = PetscObjectChangeTypeName((PetscObject)B,MATMPIBAIJ);CHKERRQ(ierr);
3085273d9f13SBarry Smith   PetscFunctionReturn(0);
3086273d9f13SBarry Smith }
3087273d9f13SBarry Smith 
3088209238afSKris Buschelman /*MC
3089002d173eSKris Buschelman    MATBAIJ - MATBAIJ = "baij" - A matrix type to be used for block sparse matrices.
3090209238afSKris Buschelman 
3091209238afSKris Buschelman    This matrix type is identical to MATSEQBAIJ when constructed with a single process communicator,
3092209238afSKris Buschelman    and MATMPIBAIJ otherwise.
3093209238afSKris Buschelman 
3094209238afSKris Buschelman    Options Database Keys:
3095209238afSKris Buschelman . -mat_type baij - sets the matrix type to "baij" during a call to MatSetFromOptions()
3096209238afSKris Buschelman 
3097209238afSKris Buschelman   Level: beginner
3098209238afSKris Buschelman 
309969b1f4b7SBarry Smith .seealso: MatCreateBAIJ(),MATSEQBAIJ,MATMPIBAIJ, MatMPIBAIJSetPreallocation(), MatMPIBAIJSetPreallocationCSR()
3100209238afSKris Buschelman M*/
3101209238afSKris Buschelman 
31024a2ae208SSatish Balay #undef __FUNCT__
31034a2ae208SSatish Balay #define __FUNCT__ "MatMPIBAIJSetPreallocation"
3104273d9f13SBarry Smith /*@C
3105aac34f13SBarry Smith    MatMPIBAIJSetPreallocation - Allocates memory for a sparse parallel matrix in block AIJ format
3106273d9f13SBarry Smith    (block compressed row).  For good matrix assembly performance
3107273d9f13SBarry Smith    the user should preallocate the matrix storage by setting the parameters
3108273d9f13SBarry Smith    d_nz (or d_nnz) and o_nz (or o_nnz).  By setting these parameters accurately,
3109273d9f13SBarry Smith    performance can be increased by more than a factor of 50.
3110273d9f13SBarry Smith 
3111273d9f13SBarry Smith    Collective on Mat
3112273d9f13SBarry Smith 
3113273d9f13SBarry Smith    Input Parameters:
31141c4f3114SJed Brown +  B - the matrix
3115e8271787SHong Zhang .  bs   - size of block
3116273d9f13SBarry Smith .  d_nz  - number of block nonzeros per block row in diagonal portion of local
3117273d9f13SBarry Smith            submatrix  (same for all local rows)
3118273d9f13SBarry Smith .  d_nnz - array containing the number of block nonzeros in the various block rows
3119273d9f13SBarry Smith            of the in diagonal portion of the local (possibly different for each block
31200298fd71SBarry Smith            row) or NULL.  If you plan to factor the matrix you must leave room for the diagonal entry and
312195742e49SBarry Smith            set it even if it is zero.
3122273d9f13SBarry Smith .  o_nz  - number of block nonzeros per block row in the off-diagonal portion of local
3123273d9f13SBarry Smith            submatrix (same for all local rows).
3124273d9f13SBarry Smith -  o_nnz - array containing the number of nonzeros in the various block rows of the
3125273d9f13SBarry Smith            off-diagonal portion of the local submatrix (possibly different for
31260298fd71SBarry Smith            each block row) or NULL.
3127273d9f13SBarry Smith 
312849a6f317SBarry Smith    If the *_nnz parameter is given then the *_nz parameter is ignored
3129273d9f13SBarry Smith 
3130273d9f13SBarry Smith    Options Database Keys:
31318c07d4e3SBarry Smith +   -mat_block_size - size of the blocks to use
31328c07d4e3SBarry Smith -   -mat_use_hash_table <fact>
3133273d9f13SBarry Smith 
3134273d9f13SBarry Smith    Notes:
3135273d9f13SBarry Smith    If PETSC_DECIDE or  PETSC_DETERMINE is used for a particular argument on one processor
3136273d9f13SBarry Smith    than it must be used on all processors that share the object for that argument.
3137273d9f13SBarry Smith 
3138273d9f13SBarry Smith    Storage Information:
3139273d9f13SBarry Smith    For a square global matrix we define each processor's diagonal portion
3140273d9f13SBarry Smith    to be its local rows and the corresponding columns (a square submatrix);
3141273d9f13SBarry Smith    each processor's off-diagonal portion encompasses the remainder of the
3142273d9f13SBarry Smith    local matrix (a rectangular submatrix).
3143273d9f13SBarry Smith 
3144273d9f13SBarry Smith    The user can specify preallocated storage for the diagonal part of
3145273d9f13SBarry Smith    the local submatrix with either d_nz or d_nnz (not both).  Set
31460298fd71SBarry Smith    d_nz=PETSC_DEFAULT and d_nnz=NULL for PETSc to control dynamic
3147273d9f13SBarry Smith    memory allocation.  Likewise, specify preallocated storage for the
3148273d9f13SBarry Smith    off-diagonal part of the local submatrix with o_nz or o_nnz (not both).
3149273d9f13SBarry Smith 
3150273d9f13SBarry Smith    Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
3151273d9f13SBarry Smith    the figure below we depict these three local rows and all columns (0-11).
3152273d9f13SBarry Smith 
3153273d9f13SBarry Smith .vb
3154273d9f13SBarry Smith            0 1 2 3 4 5 6 7 8 9 10 11
3155a4b1a0f6SJed Brown           --------------------------
3156273d9f13SBarry Smith    row 3  |o o o d d d o o o o  o  o
3157273d9f13SBarry Smith    row 4  |o o o d d d o o o o  o  o
3158273d9f13SBarry Smith    row 5  |o o o d d d o o o o  o  o
3159a4b1a0f6SJed Brown           --------------------------
3160273d9f13SBarry Smith .ve
3161273d9f13SBarry Smith 
3162273d9f13SBarry Smith    Thus, any entries in the d locations are stored in the d (diagonal)
3163273d9f13SBarry Smith    submatrix, and any entries in the o locations are stored in the
3164273d9f13SBarry Smith    o (off-diagonal) submatrix.  Note that the d and the o submatrices are
3165273d9f13SBarry Smith    stored simply in the MATSEQBAIJ format for compressed row storage.
3166273d9f13SBarry Smith 
3167273d9f13SBarry Smith    Now d_nz should indicate the number of block nonzeros per row in the d matrix,
3168273d9f13SBarry Smith    and o_nz should indicate the number of block nonzeros per row in the o matrix.
3169273d9f13SBarry Smith    In general, for PDE problems in which most nonzeros are near the diagonal,
3170273d9f13SBarry Smith    one expects d_nz >> o_nz.   For large problems you MUST preallocate memory
3171273d9f13SBarry Smith    or you will get TERRIBLE performance; see the users' manual chapter on
3172273d9f13SBarry Smith    matrices.
3173273d9f13SBarry Smith 
3174aa95bbe8SBarry Smith    You can call MatGetInfo() to get information on how effective the preallocation was;
3175aa95bbe8SBarry Smith    for example the fields mallocs,nz_allocated,nz_used,nz_unneeded;
3176aa95bbe8SBarry Smith    You can also run with the option -info and look for messages with the string
3177aa95bbe8SBarry Smith    malloc in them to see if additional memory allocation was needed.
3178aa95bbe8SBarry Smith 
3179273d9f13SBarry Smith    Level: intermediate
3180273d9f13SBarry Smith 
3181273d9f13SBarry Smith .keywords: matrix, block, aij, compressed row, sparse, parallel
3182273d9f13SBarry Smith 
3183ab978733SBarry Smith .seealso: MatCreate(), MatCreateSeqBAIJ(), MatSetValues(), MatCreateBAIJ(), MatMPIBAIJSetPreallocationCSR(), PetscSplitOwnership()
3184273d9f13SBarry Smith @*/
31857087cfbeSBarry Smith PetscErrorCode  MatMPIBAIJSetPreallocation(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[])
3186273d9f13SBarry Smith {
31874ac538c5SBarry Smith   PetscErrorCode ierr;
3188273d9f13SBarry Smith 
3189273d9f13SBarry Smith   PetscFunctionBegin;
31906ba663aaSJed Brown   PetscValidHeaderSpecific(B,MAT_CLASSID,1);
31916ba663aaSJed Brown   PetscValidType(B,1);
31926ba663aaSJed Brown   PetscValidLogicalCollectiveInt(B,bs,2);
31934ac538c5SBarry Smith   ierr = PetscTryMethod(B,"MatMPIBAIJSetPreallocation_C",(Mat,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[]),(B,bs,d_nz,d_nnz,o_nz,o_nnz));CHKERRQ(ierr);
3194273d9f13SBarry Smith   PetscFunctionReturn(0);
3195273d9f13SBarry Smith }
3196273d9f13SBarry Smith 
31974a2ae208SSatish Balay #undef __FUNCT__
319869b1f4b7SBarry Smith #define __FUNCT__ "MatCreateBAIJ"
319979bdfe76SSatish Balay /*@C
320069b1f4b7SBarry Smith    MatCreateBAIJ - Creates a sparse parallel matrix in block AIJ format
320179bdfe76SSatish Balay    (block compressed row).  For good matrix assembly performance
320279bdfe76SSatish Balay    the user should preallocate the matrix storage by setting the parameters
320379bdfe76SSatish Balay    d_nz (or d_nnz) and o_nz (or o_nnz).  By setting these parameters accurately,
320479bdfe76SSatish Balay    performance can be increased by more than a factor of 50.
320579bdfe76SSatish Balay 
3206db81eaa0SLois Curfman McInnes    Collective on MPI_Comm
3207db81eaa0SLois Curfman McInnes 
320879bdfe76SSatish Balay    Input Parameters:
3209db81eaa0SLois Curfman McInnes +  comm - MPI communicator
321079bdfe76SSatish Balay .  bs   - size of blockk
321179bdfe76SSatish Balay .  m - number of local rows (or PETSC_DECIDE to have calculated if M is given)
321292e8d321SLois Curfman McInnes            This value should be the same as the local size used in creating the
321392e8d321SLois Curfman McInnes            y vector for the matrix-vector product y = Ax.
321492e8d321SLois Curfman McInnes .  n - number of local columns (or PETSC_DECIDE to have calculated if N is given)
321592e8d321SLois Curfman McInnes            This value should be the same as the local size used in creating the
321692e8d321SLois Curfman McInnes            x vector for the matrix-vector product y = Ax.
3217be79a94dSBarry Smith .  M - number of global rows (or PETSC_DETERMINE to have calculated if m is given)
3218be79a94dSBarry Smith .  N - number of global columns (or PETSC_DETERMINE to have calculated if n is given)
321947a75d0bSBarry Smith .  d_nz  - number of nonzero blocks per block row in diagonal portion of local
322079bdfe76SSatish Balay            submatrix  (same for all local rows)
322147a75d0bSBarry Smith .  d_nnz - array containing the number of nonzero blocks in the various block rows
322292e8d321SLois Curfman McInnes            of the in diagonal portion of the local (possibly different for each block
32230298fd71SBarry Smith            row) or NULL.  If you plan to factor the matrix you must leave room for the diagonal entry
322495742e49SBarry Smith            and set it even if it is zero.
322547a75d0bSBarry Smith .  o_nz  - number of nonzero blocks per block row in the off-diagonal portion of local
322679bdfe76SSatish Balay            submatrix (same for all local rows).
322747a75d0bSBarry Smith -  o_nnz - array containing the number of nonzero blocks in the various block rows of the
322892e8d321SLois Curfman McInnes            off-diagonal portion of the local submatrix (possibly different for
32290298fd71SBarry Smith            each block row) or NULL.
323079bdfe76SSatish Balay 
323179bdfe76SSatish Balay    Output Parameter:
323279bdfe76SSatish Balay .  A - the matrix
323379bdfe76SSatish Balay 
3234db81eaa0SLois Curfman McInnes    Options Database Keys:
32358c07d4e3SBarry Smith +   -mat_block_size - size of the blocks to use
32368c07d4e3SBarry Smith -   -mat_use_hash_table <fact>
32373ffaccefSLois Curfman McInnes 
3238175b88e8SBarry Smith    It is recommended that one use the MatCreate(), MatSetType() and/or MatSetFromOptions(),
3239ae1d86c5SBarry Smith    MatXXXXSetPreallocation() paradgm instead of this routine directly.
3240175b88e8SBarry Smith    [MatXXXXSetPreallocation() is, for example, MatSeqAIJSetPreallocation]
3241175b88e8SBarry Smith 
3242b259b22eSLois Curfman McInnes    Notes:
324349a6f317SBarry Smith    If the *_nnz parameter is given then the *_nz parameter is ignored
324449a6f317SBarry Smith 
324547a75d0bSBarry Smith    A nonzero block is any block that as 1 or more nonzeros in it
324647a75d0bSBarry Smith 
324779bdfe76SSatish Balay    The user MUST specify either the local or global matrix dimensions
324879bdfe76SSatish Balay    (possibly both).
324979bdfe76SSatish Balay 
3250be79a94dSBarry Smith    If PETSC_DECIDE or  PETSC_DETERMINE is used for a particular argument on one processor
3251be79a94dSBarry Smith    than it must be used on all processors that share the object for that argument.
3252be79a94dSBarry Smith 
325379bdfe76SSatish Balay    Storage Information:
325479bdfe76SSatish Balay    For a square global matrix we define each processor's diagonal portion
325579bdfe76SSatish Balay    to be its local rows and the corresponding columns (a square submatrix);
325679bdfe76SSatish Balay    each processor's off-diagonal portion encompasses the remainder of the
325779bdfe76SSatish Balay    local matrix (a rectangular submatrix).
325879bdfe76SSatish Balay 
325979bdfe76SSatish Balay    The user can specify preallocated storage for the diagonal part of
326079bdfe76SSatish Balay    the local submatrix with either d_nz or d_nnz (not both).  Set
32610298fd71SBarry Smith    d_nz=PETSC_DEFAULT and d_nnz=NULL for PETSc to control dynamic
326279bdfe76SSatish Balay    memory allocation.  Likewise, specify preallocated storage for the
326379bdfe76SSatish Balay    off-diagonal part of the local submatrix with o_nz or o_nnz (not both).
326479bdfe76SSatish Balay 
326579bdfe76SSatish Balay    Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
326679bdfe76SSatish Balay    the figure below we depict these three local rows and all columns (0-11).
326779bdfe76SSatish Balay 
3268db81eaa0SLois Curfman McInnes .vb
3269db81eaa0SLois Curfman McInnes            0 1 2 3 4 5 6 7 8 9 10 11
3270a4b1a0f6SJed Brown           --------------------------
3271db81eaa0SLois Curfman McInnes    row 3  |o o o d d d o o o o  o  o
3272db81eaa0SLois Curfman McInnes    row 4  |o o o d d d o o o o  o  o
3273db81eaa0SLois Curfman McInnes    row 5  |o o o d d d o o o o  o  o
3274a4b1a0f6SJed Brown           --------------------------
3275db81eaa0SLois Curfman McInnes .ve
327679bdfe76SSatish Balay 
327779bdfe76SSatish Balay    Thus, any entries in the d locations are stored in the d (diagonal)
327879bdfe76SSatish Balay    submatrix, and any entries in the o locations are stored in the
327979bdfe76SSatish Balay    o (off-diagonal) submatrix.  Note that the d and the o submatrices are
328057b952d6SSatish Balay    stored simply in the MATSEQBAIJ format for compressed row storage.
328179bdfe76SSatish Balay 
3282d64ed03dSBarry Smith    Now d_nz should indicate the number of block nonzeros per row in the d matrix,
3283d64ed03dSBarry Smith    and o_nz should indicate the number of block nonzeros per row in the o matrix.
328479bdfe76SSatish Balay    In general, for PDE problems in which most nonzeros are near the diagonal,
328592e8d321SLois Curfman McInnes    one expects d_nz >> o_nz.   For large problems you MUST preallocate memory
328692e8d321SLois Curfman McInnes    or you will get TERRIBLE performance; see the users' manual chapter on
32876da5968aSLois Curfman McInnes    matrices.
328879bdfe76SSatish Balay 
3289027ccd11SLois Curfman McInnes    Level: intermediate
3290027ccd11SLois Curfman McInnes 
329192e8d321SLois Curfman McInnes .keywords: matrix, block, aij, compressed row, sparse, parallel
329279bdfe76SSatish Balay 
329369b1f4b7SBarry Smith .seealso: MatCreate(), MatCreateSeqBAIJ(), MatSetValues(), MatCreateBAIJ(), MatMPIBAIJSetPreallocation(), MatMPIBAIJSetPreallocationCSR()
329479bdfe76SSatish Balay @*/
329569b1f4b7SBarry Smith PetscErrorCode  MatCreateBAIJ(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[],Mat *A)
329679bdfe76SSatish Balay {
32976849ba73SBarry Smith   PetscErrorCode ierr;
3298b24ad042SBarry Smith   PetscMPIInt    size;
329979bdfe76SSatish Balay 
3300d64ed03dSBarry Smith   PetscFunctionBegin;
3301f69a0ea3SMatthew Knepley   ierr = MatCreate(comm,A);CHKERRQ(ierr);
3302f69a0ea3SMatthew Knepley   ierr = MatSetSizes(*A,m,n,M,N);CHKERRQ(ierr);
3303d132466eSBarry Smith   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
3304273d9f13SBarry Smith   if (size > 1) {
3305273d9f13SBarry Smith     ierr = MatSetType(*A,MATMPIBAIJ);CHKERRQ(ierr);
3306273d9f13SBarry Smith     ierr = MatMPIBAIJSetPreallocation(*A,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr);
3307273d9f13SBarry Smith   } else {
3308273d9f13SBarry Smith     ierr = MatSetType(*A,MATSEQBAIJ);CHKERRQ(ierr);
3309273d9f13SBarry Smith     ierr = MatSeqBAIJSetPreallocation(*A,bs,d_nz,d_nnz);CHKERRQ(ierr);
33103914022bSBarry Smith   }
33113a40ed3dSBarry Smith   PetscFunctionReturn(0);
331279bdfe76SSatish Balay }
3313026e39d0SSatish Balay 
33144a2ae208SSatish Balay #undef __FUNCT__
33154a2ae208SSatish Balay #define __FUNCT__ "MatDuplicate_MPIBAIJ"
33166849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIBAIJ(Mat matin,MatDuplicateOption cpvalues,Mat *newmat)
33170ac07820SSatish Balay {
33180ac07820SSatish Balay   Mat            mat;
33190ac07820SSatish Balay   Mat_MPIBAIJ    *a,*oldmat = (Mat_MPIBAIJ*)matin->data;
3320dfbe8321SBarry Smith   PetscErrorCode ierr;
3321b24ad042SBarry Smith   PetscInt       len=0;
33220ac07820SSatish Balay 
3323d64ed03dSBarry Smith   PetscFunctionBegin;
33240ac07820SSatish Balay   *newmat = 0;
3325ce94432eSBarry Smith   ierr    = MatCreate(PetscObjectComm((PetscObject)matin),&mat);CHKERRQ(ierr);
3326d0f46423SBarry Smith   ierr    = MatSetSizes(mat,matin->rmap->n,matin->cmap->n,matin->rmap->N,matin->cmap->N);CHKERRQ(ierr);
33277adad957SLisandro Dalcin   ierr    = MatSetType(mat,((PetscObject)matin)->type_name);CHKERRQ(ierr);
33281d5dac46SHong Zhang   ierr    = PetscMemcpy(mat->ops,matin->ops,sizeof(struct _MatOps));CHKERRQ(ierr);
33297fff6886SHong Zhang 
3330d5f3da31SBarry Smith   mat->factortype   = matin->factortype;
3331273d9f13SBarry Smith   mat->preallocated = PETSC_TRUE;
33320ac07820SSatish Balay   mat->assembled    = PETSC_TRUE;
33337fff6886SHong Zhang   mat->insertmode   = NOT_SET_VALUES;
33347fff6886SHong Zhang 
3335273d9f13SBarry Smith   a             = (Mat_MPIBAIJ*)mat->data;
3336d0f46423SBarry Smith   mat->rmap->bs = matin->rmap->bs;
33370ac07820SSatish Balay   a->bs2        = oldmat->bs2;
33380ac07820SSatish Balay   a->mbs        = oldmat->mbs;
33390ac07820SSatish Balay   a->nbs        = oldmat->nbs;
33400ac07820SSatish Balay   a->Mbs        = oldmat->Mbs;
33410ac07820SSatish Balay   a->Nbs        = oldmat->Nbs;
33420ac07820SSatish Balay 
33431e1e43feSBarry Smith   ierr = PetscLayoutReference(matin->rmap,&mat->rmap);CHKERRQ(ierr);
33441e1e43feSBarry Smith   ierr = PetscLayoutReference(matin->cmap,&mat->cmap);CHKERRQ(ierr);
3345899cda47SBarry Smith 
33460ac07820SSatish Balay   a->size         = oldmat->size;
33470ac07820SSatish Balay   a->rank         = oldmat->rank;
3348aef5e8e0SSatish Balay   a->donotstash   = oldmat->donotstash;
3349aef5e8e0SSatish Balay   a->roworiented  = oldmat->roworiented;
3350aef5e8e0SSatish Balay   a->rowindices   = 0;
33510ac07820SSatish Balay   a->rowvalues    = 0;
33520ac07820SSatish Balay   a->getrowactive = PETSC_FALSE;
335330793edcSSatish Balay   a->barray       = 0;
3354899cda47SBarry Smith   a->rstartbs     = oldmat->rstartbs;
3355899cda47SBarry Smith   a->rendbs       = oldmat->rendbs;
3356899cda47SBarry Smith   a->cstartbs     = oldmat->cstartbs;
3357899cda47SBarry Smith   a->cendbs       = oldmat->cendbs;
33580ac07820SSatish Balay 
3359133cdb44SSatish Balay   /* hash table stuff */
3360133cdb44SSatish Balay   a->ht           = 0;
3361133cdb44SSatish Balay   a->hd           = 0;
3362133cdb44SSatish Balay   a->ht_size      = 0;
3363133cdb44SSatish Balay   a->ht_flag      = oldmat->ht_flag;
336425fdafccSSatish Balay   a->ht_fact      = oldmat->ht_fact;
3365133cdb44SSatish Balay   a->ht_total_ct  = 0;
3366133cdb44SSatish Balay   a->ht_insert_ct = 0;
3367133cdb44SSatish Balay 
3368899cda47SBarry Smith   ierr = PetscMemcpy(a->rangebs,oldmat->rangebs,(a->size+1)*sizeof(PetscInt));CHKERRQ(ierr);
33690ac07820SSatish Balay   if (oldmat->colmap) {
3370aa482453SBarry Smith #if defined(PETSC_USE_CTABLE)
33710f5bd95cSBarry Smith     ierr = PetscTableCreateCopy(oldmat->colmap,&a->colmap);CHKERRQ(ierr);
337248e59246SSatish Balay #else
3373785e854fSJed Brown     ierr = PetscMalloc1((a->Nbs),&a->colmap);CHKERRQ(ierr);
33743bb1ff40SBarry Smith     ierr = PetscLogObjectMemory((PetscObject)mat,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr);
3375b24ad042SBarry Smith     ierr = PetscMemcpy(a->colmap,oldmat->colmap,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr);
337648e59246SSatish Balay #endif
33770ac07820SSatish Balay   } else a->colmap = 0;
33784beb1cfeSHong Zhang 
33790ac07820SSatish Balay   if (oldmat->garray && (len = ((Mat_SeqBAIJ*)(oldmat->B->data))->nbs)) {
3380785e854fSJed Brown     ierr = PetscMalloc1(len,&a->garray);CHKERRQ(ierr);
33813bb1ff40SBarry Smith     ierr = PetscLogObjectMemory((PetscObject)mat,len*sizeof(PetscInt));CHKERRQ(ierr);
3382b24ad042SBarry Smith     ierr = PetscMemcpy(a->garray,oldmat->garray,len*sizeof(PetscInt));CHKERRQ(ierr);
33830ac07820SSatish Balay   } else a->garray = 0;
33840ac07820SSatish Balay 
3385ce94432eSBarry Smith   ierr = MatStashCreate_Private(PetscObjectComm((PetscObject)matin),matin->rmap->bs,&mat->bstash);CHKERRQ(ierr);
33860ac07820SSatish Balay   ierr = VecDuplicate(oldmat->lvec,&a->lvec);CHKERRQ(ierr);
33873bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->lvec);CHKERRQ(ierr);
33880ac07820SSatish Balay   ierr = VecScatterCopy(oldmat->Mvctx,&a->Mvctx);CHKERRQ(ierr);
33893bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->Mvctx);CHKERRQ(ierr);
33907fff6886SHong Zhang 
33912e8a6d31SBarry Smith   ierr    = MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr);
33923bb1ff40SBarry Smith   ierr    = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->A);CHKERRQ(ierr);
33932e8a6d31SBarry Smith   ierr    = MatDuplicate(oldmat->B,cpvalues,&a->B);CHKERRQ(ierr);
33943bb1ff40SBarry Smith   ierr    = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->B);CHKERRQ(ierr);
3395140e18c1SBarry Smith   ierr    = PetscFunctionListDuplicate(((PetscObject)matin)->qlist,&((PetscObject)mat)->qlist);CHKERRQ(ierr);
33960ac07820SSatish Balay   *newmat = mat;
33973a40ed3dSBarry Smith   PetscFunctionReturn(0);
33980ac07820SSatish Balay }
339957b952d6SSatish Balay 
34004a2ae208SSatish Balay #undef __FUNCT__
34015bba2384SShri Abhyankar #define __FUNCT__ "MatLoad_MPIBAIJ"
3402112444f4SShri Abhyankar PetscErrorCode MatLoad_MPIBAIJ(Mat newmat,PetscViewer viewer)
34034683f7a4SShri Abhyankar {
34044683f7a4SShri Abhyankar   PetscErrorCode ierr;
34054683f7a4SShri Abhyankar   int            fd;
34064683f7a4SShri Abhyankar   PetscInt       i,nz,j,rstart,rend;
34074683f7a4SShri Abhyankar   PetscScalar    *vals,*buf;
3408ce94432eSBarry Smith   MPI_Comm       comm;
34094683f7a4SShri Abhyankar   MPI_Status     status;
34104683f7a4SShri Abhyankar   PetscMPIInt    rank,size,maxnz;
34114683f7a4SShri Abhyankar   PetscInt       header[4],*rowlengths = 0,M,N,m,*rowners,*cols;
34120298fd71SBarry Smith   PetscInt       *locrowlens = NULL,*procsnz = NULL,*browners = NULL;
34133059b6faSBarry Smith   PetscInt       jj,*mycols,*ibuf,bs = newmat->rmap->bs,Mbs,mbs,extra_rows,mmax;
34144683f7a4SShri Abhyankar   PetscMPIInt    tag    = ((PetscObject)viewer)->tag;
34150298fd71SBarry Smith   PetscInt       *dlens = NULL,*odlens = NULL,*mask = NULL,*masked1 = NULL,*masked2 = NULL,rowcount,odcount;
34164683f7a4SShri Abhyankar   PetscInt       dcount,kmax,k,nzcount,tmp,mend,sizesset=1,grows,gcols;
34174683f7a4SShri Abhyankar 
34184683f7a4SShri Abhyankar   PetscFunctionBegin;
3419ce94432eSBarry Smith   ierr = PetscObjectGetComm((PetscObject)viewer,&comm);CHKERRQ(ierr);
34200298fd71SBarry Smith   ierr = PetscOptionsBegin(comm,NULL,"Options for loading MPIBAIJ matrix 2","Mat");CHKERRQ(ierr);
34210298fd71SBarry Smith   ierr = PetscOptionsInt("-matload_block_size","Set the blocksize used to store the matrix","MatLoad",bs,&bs,NULL);CHKERRQ(ierr);
34224683f7a4SShri Abhyankar   ierr = PetscOptionsEnd();CHKERRQ(ierr);
34233059b6faSBarry Smith   if (bs < 0) bs = 1;
34244683f7a4SShri Abhyankar 
34254683f7a4SShri Abhyankar   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
34264683f7a4SShri Abhyankar   ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr);
34274683f7a4SShri Abhyankar   if (!rank) {
34284683f7a4SShri Abhyankar     ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr);
34294683f7a4SShri Abhyankar     ierr = PetscBinaryRead(fd,(char*)header,4,PETSC_INT);CHKERRQ(ierr);
34304683f7a4SShri Abhyankar     if (header[0] != MAT_FILE_CLASSID) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"not matrix object");
34314683f7a4SShri Abhyankar   }
34324683f7a4SShri Abhyankar 
34334683f7a4SShri Abhyankar   if (newmat->rmap->n < 0 && newmat->rmap->N < 0 && newmat->cmap->n < 0 && newmat->cmap->N < 0) sizesset = 0;
34344683f7a4SShri Abhyankar 
34354683f7a4SShri Abhyankar   ierr = MPI_Bcast(header+1,3,MPIU_INT,0,comm);CHKERRQ(ierr);
34364683f7a4SShri Abhyankar   M    = header[1]; N = header[2];
34374683f7a4SShri Abhyankar 
34384683f7a4SShri Abhyankar   /* If global rows/cols are set to PETSC_DECIDE, set it to the sizes given in the file */
34394683f7a4SShri Abhyankar   if (sizesset && newmat->rmap->N < 0) newmat->rmap->N = M;
34404683f7a4SShri Abhyankar   if (sizesset && newmat->cmap->N < 0) newmat->cmap->N = N;
34414683f7a4SShri Abhyankar 
34424683f7a4SShri Abhyankar   /* If global sizes are set, check if they are consistent with that given in the file */
34434683f7a4SShri Abhyankar   if (sizesset) {
34444683f7a4SShri Abhyankar     ierr = MatGetSize(newmat,&grows,&gcols);CHKERRQ(ierr);
34454683f7a4SShri Abhyankar   }
3446abd38a8fSBarry Smith   if (sizesset && newmat->rmap->N != grows) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED, "Inconsistent # of rows:Matrix in file has (%d) and input matrix has (%d)",M,grows);
3447abd38a8fSBarry Smith   if (sizesset && newmat->cmap->N != gcols) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED, "Inconsistent # of cols:Matrix in file has (%d) and input matrix has (%d)",N,gcols);
34484683f7a4SShri Abhyankar 
3449ce94432eSBarry Smith   if (M != N) SETERRQ(PetscObjectComm((PetscObject)viewer),PETSC_ERR_SUP,"Can only do square matrices");
34504683f7a4SShri Abhyankar 
34514683f7a4SShri Abhyankar   /*
34524683f7a4SShri Abhyankar      This code adds extra rows to make sure the number of rows is
34534683f7a4SShri Abhyankar      divisible by the blocksize
34544683f7a4SShri Abhyankar   */
34554683f7a4SShri Abhyankar   Mbs        = M/bs;
34564683f7a4SShri Abhyankar   extra_rows = bs - M + bs*Mbs;
34574683f7a4SShri Abhyankar   if (extra_rows == bs) extra_rows = 0;
34584683f7a4SShri Abhyankar   else                  Mbs++;
34594683f7a4SShri Abhyankar   if (extra_rows && !rank) {
34604683f7a4SShri Abhyankar     ierr = PetscInfo(viewer,"Padding loaded matrix to match blocksize\n");CHKERRQ(ierr);
34614683f7a4SShri Abhyankar   }
34624683f7a4SShri Abhyankar 
34634683f7a4SShri Abhyankar   /* determine ownership of all rows */
34644683f7a4SShri Abhyankar   if (newmat->rmap->n < 0) { /* PETSC_DECIDE */
34654683f7a4SShri Abhyankar     mbs = Mbs/size + ((Mbs % size) > rank);
34664683f7a4SShri Abhyankar     m   = mbs*bs;
34674683f7a4SShri Abhyankar   } else { /* User set */
34684683f7a4SShri Abhyankar     m   = newmat->rmap->n;
34694683f7a4SShri Abhyankar     mbs = m/bs;
34704683f7a4SShri Abhyankar   }
3471dcca6d9dSJed Brown   ierr = PetscMalloc2(size+1,&rowners,size+1,&browners);CHKERRQ(ierr);
34724683f7a4SShri Abhyankar   ierr = MPI_Allgather(&mbs,1,MPIU_INT,rowners+1,1,MPIU_INT,comm);CHKERRQ(ierr);
34734683f7a4SShri Abhyankar 
34744683f7a4SShri Abhyankar   /* process 0 needs enough room for process with most rows */
34754683f7a4SShri Abhyankar   if (!rank) {
34764683f7a4SShri Abhyankar     mmax = rowners[1];
34771251c579SMatthew G Knepley     for (i=2; i<=size; i++) {
34784683f7a4SShri Abhyankar       mmax = PetscMax(mmax,rowners[i]);
34794683f7a4SShri Abhyankar     }
34804683f7a4SShri Abhyankar     mmax*=bs;
34813964eb88SJed Brown   } else mmax = -1;             /* unused, but compiler warns anyway */
34824683f7a4SShri Abhyankar 
34834683f7a4SShri Abhyankar   rowners[0] = 0;
34844683f7a4SShri Abhyankar   for (i=2; i<=size; i++) rowners[i] += rowners[i-1];
34854683f7a4SShri Abhyankar   for (i=0; i<=size; i++) browners[i] = rowners[i]*bs;
34864683f7a4SShri Abhyankar   rstart = rowners[rank];
34874683f7a4SShri Abhyankar   rend   = rowners[rank+1];
34884683f7a4SShri Abhyankar 
34894683f7a4SShri Abhyankar   /* distribute row lengths to all processors */
3490785e854fSJed Brown   ierr = PetscMalloc1(m,&locrowlens);CHKERRQ(ierr);
34914683f7a4SShri Abhyankar   if (!rank) {
34924683f7a4SShri Abhyankar     mend = m;
34934683f7a4SShri Abhyankar     if (size == 1) mend = mend - extra_rows;
34944683f7a4SShri Abhyankar     ierr = PetscBinaryRead(fd,locrowlens,mend,PETSC_INT);CHKERRQ(ierr);
34954683f7a4SShri Abhyankar     for (j=mend; j<m; j++) locrowlens[j] = 1;
3496785e854fSJed Brown     ierr = PetscMalloc1(mmax,&rowlengths);CHKERRQ(ierr);
34971795a4d1SJed Brown     ierr = PetscCalloc1(size,&procsnz);CHKERRQ(ierr);
34984683f7a4SShri Abhyankar     for (j=0; j<m; j++) {
34994683f7a4SShri Abhyankar       procsnz[0] += locrowlens[j];
35004683f7a4SShri Abhyankar     }
35014683f7a4SShri Abhyankar     for (i=1; i<size; i++) {
35024683f7a4SShri Abhyankar       mend = browners[i+1] - browners[i];
35034683f7a4SShri Abhyankar       if (i == size-1) mend = mend - extra_rows;
35044683f7a4SShri Abhyankar       ierr = PetscBinaryRead(fd,rowlengths,mend,PETSC_INT);CHKERRQ(ierr);
35054683f7a4SShri Abhyankar       for (j=mend; j<browners[i+1] - browners[i]; j++) rowlengths[j] = 1;
35064683f7a4SShri Abhyankar       /* calculate the number of nonzeros on each processor */
35074683f7a4SShri Abhyankar       for (j=0; j<browners[i+1]-browners[i]; j++) {
35084683f7a4SShri Abhyankar         procsnz[i] += rowlengths[j];
35094683f7a4SShri Abhyankar       }
35104683f7a4SShri Abhyankar       ierr = MPI_Send(rowlengths,browners[i+1]-browners[i],MPIU_INT,i,tag,comm);CHKERRQ(ierr);
35114683f7a4SShri Abhyankar     }
35124683f7a4SShri Abhyankar     ierr = PetscFree(rowlengths);CHKERRQ(ierr);
35134683f7a4SShri Abhyankar   } else {
35144683f7a4SShri Abhyankar     ierr = MPI_Recv(locrowlens,m,MPIU_INT,0,tag,comm,&status);CHKERRQ(ierr);
35154683f7a4SShri Abhyankar   }
35164683f7a4SShri Abhyankar 
35174683f7a4SShri Abhyankar   if (!rank) {
35184683f7a4SShri Abhyankar     /* determine max buffer needed and allocate it */
35194683f7a4SShri Abhyankar     maxnz = procsnz[0];
35204683f7a4SShri Abhyankar     for (i=1; i<size; i++) {
35214683f7a4SShri Abhyankar       maxnz = PetscMax(maxnz,procsnz[i]);
35224683f7a4SShri Abhyankar     }
3523785e854fSJed Brown     ierr = PetscMalloc1(maxnz,&cols);CHKERRQ(ierr);
35244683f7a4SShri Abhyankar 
35254683f7a4SShri Abhyankar     /* read in my part of the matrix column indices  */
35264683f7a4SShri Abhyankar     nz     = procsnz[0];
3527785e854fSJed Brown     ierr   = PetscMalloc1((nz+1),&ibuf);CHKERRQ(ierr);
35284683f7a4SShri Abhyankar     mycols = ibuf;
35294683f7a4SShri Abhyankar     if (size == 1) nz -= extra_rows;
35304683f7a4SShri Abhyankar     ierr = PetscBinaryRead(fd,mycols,nz,PETSC_INT);CHKERRQ(ierr);
353126fbe8dcSKarl Rupp     if (size == 1) {
353226fbe8dcSKarl Rupp       for (i=0; i< extra_rows; i++) mycols[nz+i] = M+i;
353326fbe8dcSKarl Rupp     }
35344683f7a4SShri Abhyankar 
35354683f7a4SShri Abhyankar     /* read in every ones (except the last) and ship off */
35364683f7a4SShri Abhyankar     for (i=1; i<size-1; i++) {
35374683f7a4SShri Abhyankar       nz   = procsnz[i];
35384683f7a4SShri Abhyankar       ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr);
35394683f7a4SShri Abhyankar       ierr = MPI_Send(cols,nz,MPIU_INT,i,tag,comm);CHKERRQ(ierr);
35404683f7a4SShri Abhyankar     }
35414683f7a4SShri Abhyankar     /* read in the stuff for the last proc */
35424683f7a4SShri Abhyankar     if (size != 1) {
35434683f7a4SShri Abhyankar       nz   = procsnz[size-1] - extra_rows;  /* the extra rows are not on the disk */
35444683f7a4SShri Abhyankar       ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr);
35454683f7a4SShri Abhyankar       for (i=0; i<extra_rows; i++) cols[nz+i] = M+i;
35464683f7a4SShri Abhyankar       ierr = MPI_Send(cols,nz+extra_rows,MPIU_INT,size-1,tag,comm);CHKERRQ(ierr);
35474683f7a4SShri Abhyankar     }
35484683f7a4SShri Abhyankar     ierr = PetscFree(cols);CHKERRQ(ierr);
35494683f7a4SShri Abhyankar   } else {
35504683f7a4SShri Abhyankar     /* determine buffer space needed for message */
35514683f7a4SShri Abhyankar     nz = 0;
35524683f7a4SShri Abhyankar     for (i=0; i<m; i++) {
35534683f7a4SShri Abhyankar       nz += locrowlens[i];
35544683f7a4SShri Abhyankar     }
3555785e854fSJed Brown     ierr   = PetscMalloc1((nz+1),&ibuf);CHKERRQ(ierr);
35564683f7a4SShri Abhyankar     mycols = ibuf;
35574683f7a4SShri Abhyankar     /* receive message of column indices*/
35584683f7a4SShri Abhyankar     ierr = MPI_Recv(mycols,nz,MPIU_INT,0,tag,comm,&status);CHKERRQ(ierr);
35594683f7a4SShri Abhyankar     ierr = MPI_Get_count(&status,MPIU_INT,&maxnz);CHKERRQ(ierr);
35604683f7a4SShri Abhyankar     if (maxnz != nz) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file");
35614683f7a4SShri Abhyankar   }
35624683f7a4SShri Abhyankar 
35634683f7a4SShri Abhyankar   /* loop over local rows, determining number of off diagonal entries */
3564dcca6d9dSJed Brown   ierr     = PetscMalloc2(rend-rstart,&dlens,rend-rstart,&odlens);CHKERRQ(ierr);
35651795a4d1SJed Brown   ierr     = PetscCalloc3(Mbs,&mask,Mbs,&masked1,Mbs,&masked2);CHKERRQ(ierr);
35664683f7a4SShri Abhyankar   rowcount = 0; nzcount = 0;
35674683f7a4SShri Abhyankar   for (i=0; i<mbs; i++) {
35684683f7a4SShri Abhyankar     dcount  = 0;
35694683f7a4SShri Abhyankar     odcount = 0;
35704683f7a4SShri Abhyankar     for (j=0; j<bs; j++) {
35714683f7a4SShri Abhyankar       kmax = locrowlens[rowcount];
35724683f7a4SShri Abhyankar       for (k=0; k<kmax; k++) {
35734683f7a4SShri Abhyankar         tmp = mycols[nzcount++]/bs;
35744683f7a4SShri Abhyankar         if (!mask[tmp]) {
35754683f7a4SShri Abhyankar           mask[tmp] = 1;
35764683f7a4SShri Abhyankar           if (tmp < rstart || tmp >= rend) masked2[odcount++] = tmp;
35774683f7a4SShri Abhyankar           else masked1[dcount++] = tmp;
35784683f7a4SShri Abhyankar         }
35794683f7a4SShri Abhyankar       }
35804683f7a4SShri Abhyankar       rowcount++;
35814683f7a4SShri Abhyankar     }
35824683f7a4SShri Abhyankar 
35834683f7a4SShri Abhyankar     dlens[i]  = dcount;
35844683f7a4SShri Abhyankar     odlens[i] = odcount;
35854683f7a4SShri Abhyankar 
35864683f7a4SShri Abhyankar     /* zero out the mask elements we set */
35874683f7a4SShri Abhyankar     for (j=0; j<dcount; j++) mask[masked1[j]] = 0;
35884683f7a4SShri Abhyankar     for (j=0; j<odcount; j++) mask[masked2[j]] = 0;
35894683f7a4SShri Abhyankar   }
35904683f7a4SShri Abhyankar 
35914683f7a4SShri Abhyankar 
35924683f7a4SShri Abhyankar   if (!sizesset) {
35934683f7a4SShri Abhyankar     ierr = MatSetSizes(newmat,m,m,M+extra_rows,N+extra_rows);CHKERRQ(ierr);
35944683f7a4SShri Abhyankar   }
35954683f7a4SShri Abhyankar   ierr = MatMPIBAIJSetPreallocation(newmat,bs,0,dlens,0,odlens);CHKERRQ(ierr);
35964683f7a4SShri Abhyankar 
35974683f7a4SShri Abhyankar   if (!rank) {
3598785e854fSJed Brown     ierr = PetscMalloc1((maxnz+1),&buf);CHKERRQ(ierr);
35994683f7a4SShri Abhyankar     /* read in my part of the matrix numerical values  */
36004683f7a4SShri Abhyankar     nz     = procsnz[0];
36014683f7a4SShri Abhyankar     vals   = buf;
36024683f7a4SShri Abhyankar     mycols = ibuf;
36034683f7a4SShri Abhyankar     if (size == 1) nz -= extra_rows;
36044683f7a4SShri Abhyankar     ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
360526fbe8dcSKarl Rupp     if (size == 1) {
360626fbe8dcSKarl Rupp       for (i=0; i< extra_rows; i++) vals[nz+i] = 1.0;
360726fbe8dcSKarl Rupp     }
36084683f7a4SShri Abhyankar 
36094683f7a4SShri Abhyankar     /* insert into matrix */
36104683f7a4SShri Abhyankar     jj = rstart*bs;
36114683f7a4SShri Abhyankar     for (i=0; i<m; i++) {
36124683f7a4SShri Abhyankar       ierr    = MatSetValues_MPIBAIJ(newmat,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr);
36134683f7a4SShri Abhyankar       mycols += locrowlens[i];
36144683f7a4SShri Abhyankar       vals   += locrowlens[i];
36154683f7a4SShri Abhyankar       jj++;
36164683f7a4SShri Abhyankar     }
36174683f7a4SShri Abhyankar     /* read in other processors (except the last one) and ship out */
36184683f7a4SShri Abhyankar     for (i=1; i<size-1; i++) {
36194683f7a4SShri Abhyankar       nz   = procsnz[i];
36204683f7a4SShri Abhyankar       vals = buf;
36214683f7a4SShri Abhyankar       ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
3622479e424cSMichael Lange       ierr = MPIULong_Send(vals,nz,MPIU_SCALAR,i,((PetscObject)newmat)->tag,comm);CHKERRQ(ierr);
36234683f7a4SShri Abhyankar     }
36244683f7a4SShri Abhyankar     /* the last proc */
36254683f7a4SShri Abhyankar     if (size != 1) {
36264683f7a4SShri Abhyankar       nz   = procsnz[i] - extra_rows;
36274683f7a4SShri Abhyankar       vals = buf;
36284683f7a4SShri Abhyankar       ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
36294683f7a4SShri Abhyankar       for (i=0; i<extra_rows; i++) vals[nz+i] = 1.0;
3630479e424cSMichael Lange       ierr = MPIULong_Send(vals,nz+extra_rows,MPIU_SCALAR,size-1,((PetscObject)newmat)->tag,comm);CHKERRQ(ierr);
36314683f7a4SShri Abhyankar     }
36324683f7a4SShri Abhyankar     ierr = PetscFree(procsnz);CHKERRQ(ierr);
36334683f7a4SShri Abhyankar   } else {
36344683f7a4SShri Abhyankar     /* receive numeric values */
3635785e854fSJed Brown     ierr = PetscMalloc1((nz+1),&buf);CHKERRQ(ierr);
36364683f7a4SShri Abhyankar 
36374683f7a4SShri Abhyankar     /* receive message of values*/
36384683f7a4SShri Abhyankar     vals   = buf;
36394683f7a4SShri Abhyankar     mycols = ibuf;
3640479e424cSMichael Lange     ierr   = MPIULong_Recv(vals,nz,MPIU_SCALAR,0,((PetscObject)newmat)->tag,comm);CHKERRQ(ierr);
36414683f7a4SShri Abhyankar 
36424683f7a4SShri Abhyankar     /* insert into matrix */
36434683f7a4SShri Abhyankar     jj = rstart*bs;
36444683f7a4SShri Abhyankar     for (i=0; i<m; i++) {
36454683f7a4SShri Abhyankar       ierr    = MatSetValues_MPIBAIJ(newmat,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr);
36464683f7a4SShri Abhyankar       mycols += locrowlens[i];
36474683f7a4SShri Abhyankar       vals   += locrowlens[i];
36484683f7a4SShri Abhyankar       jj++;
36494683f7a4SShri Abhyankar     }
36504683f7a4SShri Abhyankar   }
36514683f7a4SShri Abhyankar   ierr = PetscFree(locrowlens);CHKERRQ(ierr);
36524683f7a4SShri Abhyankar   ierr = PetscFree(buf);CHKERRQ(ierr);
36534683f7a4SShri Abhyankar   ierr = PetscFree(ibuf);CHKERRQ(ierr);
36544683f7a4SShri Abhyankar   ierr = PetscFree2(rowners,browners);CHKERRQ(ierr);
36554683f7a4SShri Abhyankar   ierr = PetscFree2(dlens,odlens);CHKERRQ(ierr);
36564683f7a4SShri Abhyankar   ierr = PetscFree3(mask,masked1,masked2);CHKERRQ(ierr);
36574683f7a4SShri Abhyankar   ierr = MatAssemblyBegin(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
36584683f7a4SShri Abhyankar   ierr = MatAssemblyEnd(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
36594683f7a4SShri Abhyankar   PetscFunctionReturn(0);
36604683f7a4SShri Abhyankar }
36614683f7a4SShri Abhyankar 
36624683f7a4SShri Abhyankar #undef __FUNCT__
36634a2ae208SSatish Balay #define __FUNCT__ "MatMPIBAIJSetHashTableFactor"
3664133cdb44SSatish Balay /*@
3665133cdb44SSatish Balay    MatMPIBAIJSetHashTableFactor - Sets the factor required to compute the size of the HashTable.
3666133cdb44SSatish Balay 
3667133cdb44SSatish Balay    Input Parameters:
3668133cdb44SSatish Balay .  mat  - the matrix
3669133cdb44SSatish Balay .  fact - factor
3670133cdb44SSatish Balay 
3671c5eb9154SBarry Smith    Not Collective, each process can use a different factor
3672fee21e36SBarry Smith 
36738c890885SBarry Smith    Level: advanced
36748c890885SBarry Smith 
3675133cdb44SSatish Balay   Notes:
36768c07d4e3SBarry Smith    This can also be set by the command line option: -mat_use_hash_table <fact>
3677133cdb44SSatish Balay 
3678133cdb44SSatish Balay .keywords: matrix, hashtable, factor, HT
3679133cdb44SSatish Balay 
3680133cdb44SSatish Balay .seealso: MatSetOption()
3681133cdb44SSatish Balay @*/
36827087cfbeSBarry Smith PetscErrorCode  MatMPIBAIJSetHashTableFactor(Mat mat,PetscReal fact)
3683133cdb44SSatish Balay {
36844ac538c5SBarry Smith   PetscErrorCode ierr;
36855bf65638SKris Buschelman 
36865bf65638SKris Buschelman   PetscFunctionBegin;
36874ac538c5SBarry Smith   ierr = PetscTryMethod(mat,"MatSetHashTableFactor_C",(Mat,PetscReal),(mat,fact));CHKERRQ(ierr);
36885bf65638SKris Buschelman   PetscFunctionReturn(0);
36895bf65638SKris Buschelman }
36905bf65638SKris Buschelman 
36915bf65638SKris Buschelman #undef __FUNCT__
36925bf65638SKris Buschelman #define __FUNCT__ "MatSetHashTableFactor_MPIBAIJ"
36937087cfbeSBarry Smith PetscErrorCode  MatSetHashTableFactor_MPIBAIJ(Mat mat,PetscReal fact)
36945bf65638SKris Buschelman {
369525fdafccSSatish Balay   Mat_MPIBAIJ *baij;
3696133cdb44SSatish Balay 
3697133cdb44SSatish Balay   PetscFunctionBegin;
3698133cdb44SSatish Balay   baij          = (Mat_MPIBAIJ*)mat->data;
3699133cdb44SSatish Balay   baij->ht_fact = fact;
3700133cdb44SSatish Balay   PetscFunctionReturn(0);
3701133cdb44SSatish Balay }
3702f2a5309cSSatish Balay 
37034a2ae208SSatish Balay #undef __FUNCT__
37044a2ae208SSatish Balay #define __FUNCT__ "MatMPIBAIJGetSeqBAIJ"
37059230625dSJed Brown PetscErrorCode  MatMPIBAIJGetSeqBAIJ(Mat A,Mat *Ad,Mat *Ao,const PetscInt *colmap[])
3706f2a5309cSSatish Balay {
3707f2a5309cSSatish Balay   Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data;
37085fd66863SKarl Rupp 
3709f2a5309cSSatish Balay   PetscFunctionBegin;
371021e72a00SBarry Smith   if (Ad)     *Ad     = a->A;
371121e72a00SBarry Smith   if (Ao)     *Ao     = a->B;
371221e72a00SBarry Smith   if (colmap) *colmap = a->garray;
3713f2a5309cSSatish Balay   PetscFunctionReturn(0);
3714f2a5309cSSatish Balay }
371585535b8eSBarry Smith 
371685535b8eSBarry Smith /*
371785535b8eSBarry Smith     Special version for direct calls from Fortran (to eliminate two function call overheads
371885535b8eSBarry Smith */
371985535b8eSBarry Smith #if defined(PETSC_HAVE_FORTRAN_CAPS)
372085535b8eSBarry Smith #define matmpibaijsetvaluesblocked_ MATMPIBAIJSETVALUESBLOCKED
372185535b8eSBarry Smith #elif !defined(PETSC_HAVE_FORTRAN_UNDERSCORE)
372285535b8eSBarry Smith #define matmpibaijsetvaluesblocked_ matmpibaijsetvaluesblocked
372385535b8eSBarry Smith #endif
372485535b8eSBarry Smith 
372585535b8eSBarry Smith #undef __FUNCT__
372685535b8eSBarry Smith #define __FUNCT__ "matmpibiajsetvaluesblocked"
372785535b8eSBarry Smith /*@C
372885535b8eSBarry Smith   MatMPIBAIJSetValuesBlocked - Direct Fortran call to replace call to MatSetValuesBlocked()
372985535b8eSBarry Smith 
373085535b8eSBarry Smith   Collective on Mat
373185535b8eSBarry Smith 
373285535b8eSBarry Smith   Input Parameters:
373385535b8eSBarry Smith + mat - the matrix
373485535b8eSBarry Smith . min - number of input rows
373585535b8eSBarry Smith . im - input rows
373685535b8eSBarry Smith . nin - number of input columns
373785535b8eSBarry Smith . in - input columns
373885535b8eSBarry Smith . v - numerical values input
373985535b8eSBarry Smith - addvin - INSERT_VALUES or ADD_VALUES
374085535b8eSBarry Smith 
374185535b8eSBarry Smith   Notes: This has a complete copy of MatSetValuesBlocked_MPIBAIJ() which is terrible code un-reuse.
374285535b8eSBarry Smith 
374385535b8eSBarry Smith   Level: advanced
374485535b8eSBarry Smith 
374585535b8eSBarry Smith .seealso:   MatSetValuesBlocked()
374685535b8eSBarry Smith @*/
374785535b8eSBarry Smith PetscErrorCode matmpibaijsetvaluesblocked_(Mat *matin,PetscInt *min,const PetscInt im[],PetscInt *nin,const PetscInt in[],const MatScalar v[],InsertMode *addvin)
374885535b8eSBarry Smith {
374985535b8eSBarry Smith   /* convert input arguments to C version */
375085535b8eSBarry Smith   Mat        mat  = *matin;
375185535b8eSBarry Smith   PetscInt   m    = *min, n = *nin;
375285535b8eSBarry Smith   InsertMode addv = *addvin;
375385535b8eSBarry Smith 
375485535b8eSBarry Smith   Mat_MPIBAIJ     *baij = (Mat_MPIBAIJ*)mat->data;
375585535b8eSBarry Smith   const MatScalar *value;
375685535b8eSBarry Smith   MatScalar       *barray     = baij->barray;
3757ace3abfcSBarry Smith   PetscBool       roworiented = baij->roworiented;
375885535b8eSBarry Smith   PetscErrorCode  ierr;
375985535b8eSBarry Smith   PetscInt        i,j,ii,jj,row,col,rstart=baij->rstartbs;
376085535b8eSBarry Smith   PetscInt        rend=baij->rendbs,cstart=baij->cstartbs,stepval;
3761d0f46423SBarry Smith   PetscInt        cend=baij->cendbs,bs=mat->rmap->bs,bs2=baij->bs2;
376285535b8eSBarry Smith 
376385535b8eSBarry Smith   PetscFunctionBegin;
376485535b8eSBarry Smith   /* tasks normally handled by MatSetValuesBlocked() */
376526fbe8dcSKarl Rupp   if (mat->insertmode == NOT_SET_VALUES) mat->insertmode = addv;
376685535b8eSBarry Smith #if defined(PETSC_USE_DEBUG)
3767e7e72b3dSBarry Smith   else if (mat->insertmode != addv) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Cannot mix add values and insert values");
3768e32f2f54SBarry Smith   if (mat->factortype) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Not for factored matrix");
376985535b8eSBarry Smith #endif
377085535b8eSBarry Smith   if (mat->assembled) {
377185535b8eSBarry Smith     mat->was_assembled = PETSC_TRUE;
377285535b8eSBarry Smith     mat->assembled     = PETSC_FALSE;
377385535b8eSBarry Smith   }
377485535b8eSBarry Smith   ierr = PetscLogEventBegin(MAT_SetValues,mat,0,0,0);CHKERRQ(ierr);
377585535b8eSBarry Smith 
377685535b8eSBarry Smith 
377785535b8eSBarry Smith   if (!barray) {
3778785e854fSJed Brown     ierr         = PetscMalloc1(bs2,&barray);CHKERRQ(ierr);
377985535b8eSBarry Smith     baij->barray = barray;
378085535b8eSBarry Smith   }
378185535b8eSBarry Smith 
378226fbe8dcSKarl Rupp   if (roworiented) stepval = (n-1)*bs;
378326fbe8dcSKarl Rupp   else stepval = (m-1)*bs;
378426fbe8dcSKarl Rupp 
378585535b8eSBarry Smith   for (i=0; i<m; i++) {
378685535b8eSBarry Smith     if (im[i] < 0) continue;
378785535b8eSBarry Smith #if defined(PETSC_USE_DEBUG)
3788e32f2f54SBarry Smith     if (im[i] >= baij->Mbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large, row %D max %D",im[i],baij->Mbs-1);
378985535b8eSBarry Smith #endif
379085535b8eSBarry Smith     if (im[i] >= rstart && im[i] < rend) {
379185535b8eSBarry Smith       row = im[i] - rstart;
379285535b8eSBarry Smith       for (j=0; j<n; j++) {
379385535b8eSBarry Smith         /* If NumCol = 1 then a copy is not required */
379485535b8eSBarry Smith         if ((roworiented) && (n == 1)) {
379585535b8eSBarry Smith           barray = (MatScalar*)v + i*bs2;
379685535b8eSBarry Smith         } else if ((!roworiented) && (m == 1)) {
379785535b8eSBarry Smith           barray = (MatScalar*)v + j*bs2;
379885535b8eSBarry Smith         } else { /* Here a copy is required */
379985535b8eSBarry Smith           if (roworiented) {
380085535b8eSBarry Smith             value = v + i*(stepval+bs)*bs + j*bs;
380185535b8eSBarry Smith           } else {
380285535b8eSBarry Smith             value = v + j*(stepval+bs)*bs + i*bs;
380385535b8eSBarry Smith           }
380485535b8eSBarry Smith           for (ii=0; ii<bs; ii++,value+=stepval) {
380585535b8eSBarry Smith             for (jj=0; jj<bs; jj++) {
380685535b8eSBarry Smith               *barray++ = *value++;
380785535b8eSBarry Smith             }
380885535b8eSBarry Smith           }
380985535b8eSBarry Smith           barray -=bs2;
381085535b8eSBarry Smith         }
381185535b8eSBarry Smith 
381285535b8eSBarry Smith         if (in[j] >= cstart && in[j] < cend) {
381385535b8eSBarry Smith           col  = in[j] - cstart;
381497e5c40aSBarry Smith           ierr = MatSetValuesBlocked_SeqBAIJ(baij->A,1,&row,1,&col,barray,addv);CHKERRQ(ierr);
381526fbe8dcSKarl Rupp         } else if (in[j] < 0) continue;
381685535b8eSBarry Smith #if defined(PETSC_USE_DEBUG)
3817cb9801acSJed Brown         else if (in[j] >= baij->Nbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large, col %D max %D",in[j],baij->Nbs-1);
381885535b8eSBarry Smith #endif
381985535b8eSBarry Smith         else {
382085535b8eSBarry Smith           if (mat->was_assembled) {
382185535b8eSBarry Smith             if (!baij->colmap) {
3822ab9863d7SBarry Smith               ierr = MatCreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
382385535b8eSBarry Smith             }
382485535b8eSBarry Smith 
382585535b8eSBarry Smith #if defined(PETSC_USE_DEBUG)
382685535b8eSBarry Smith #if defined(PETSC_USE_CTABLE)
382785535b8eSBarry Smith             { PetscInt data;
382885535b8eSBarry Smith               ierr = PetscTableFind(baij->colmap,in[j]+1,&data);CHKERRQ(ierr);
3829e32f2f54SBarry Smith               if ((data - 1) % bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap");
383085535b8eSBarry Smith             }
383185535b8eSBarry Smith #else
3832e32f2f54SBarry Smith             if ((baij->colmap[in[j]] - 1) % bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap");
383385535b8eSBarry Smith #endif
383485535b8eSBarry Smith #endif
383585535b8eSBarry Smith #if defined(PETSC_USE_CTABLE)
383685535b8eSBarry Smith             ierr = PetscTableFind(baij->colmap,in[j]+1,&col);CHKERRQ(ierr);
383785535b8eSBarry Smith             col  = (col - 1)/bs;
383885535b8eSBarry Smith #else
383985535b8eSBarry Smith             col = (baij->colmap[in[j]] - 1)/bs;
384085535b8eSBarry Smith #endif
384185535b8eSBarry Smith             if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) {
3842ab9863d7SBarry Smith               ierr = MatDisAssemble_MPIBAIJ(mat);CHKERRQ(ierr);
384385535b8eSBarry Smith               col  =  in[j];
384485535b8eSBarry Smith             }
384526fbe8dcSKarl Rupp           } else col = in[j];
384697e5c40aSBarry Smith           ierr = MatSetValuesBlocked_SeqBAIJ(baij->B,1,&row,1,&col,barray,addv);CHKERRQ(ierr);
384785535b8eSBarry Smith         }
384885535b8eSBarry Smith       }
384985535b8eSBarry Smith     } else {
385085535b8eSBarry Smith       if (!baij->donotstash) {
385185535b8eSBarry Smith         if (roworiented) {
385285535b8eSBarry Smith           ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
385385535b8eSBarry Smith         } else {
385485535b8eSBarry Smith           ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
385585535b8eSBarry Smith         }
385685535b8eSBarry Smith       }
385785535b8eSBarry Smith     }
385885535b8eSBarry Smith   }
385985535b8eSBarry Smith 
386085535b8eSBarry Smith   /* task normally handled by MatSetValuesBlocked() */
386185535b8eSBarry Smith   ierr = PetscLogEventEnd(MAT_SetValues,mat,0,0,0);CHKERRQ(ierr);
386285535b8eSBarry Smith   PetscFunctionReturn(0);
386385535b8eSBarry Smith }
3864dfb205c3SBarry Smith 
3865dfb205c3SBarry Smith #undef __FUNCT__
3866dfb205c3SBarry Smith #define __FUNCT__ "MatCreateMPIBAIJWithArrays"
3867dfb205c3SBarry Smith /*@
3868dfb205c3SBarry Smith      MatCreateMPIBAIJWithArrays - creates a MPI BAIJ matrix using arrays that contain in standard
3869dfb205c3SBarry Smith          CSR format the local rows.
3870dfb205c3SBarry Smith 
3871dfb205c3SBarry Smith    Collective on MPI_Comm
3872dfb205c3SBarry Smith 
3873dfb205c3SBarry Smith    Input Parameters:
3874dfb205c3SBarry Smith +  comm - MPI communicator
3875dfb205c3SBarry Smith .  bs - the block size, only a block size of 1 is supported
3876dfb205c3SBarry Smith .  m - number of local rows (Cannot be PETSC_DECIDE)
3877dfb205c3SBarry Smith .  n - This value should be the same as the local size used in creating the
3878dfb205c3SBarry Smith        x vector for the matrix-vector product y = Ax. (or PETSC_DECIDE to have
3879dfb205c3SBarry Smith        calculated if N is given) For square matrices n is almost always m.
3880dfb205c3SBarry Smith .  M - number of global rows (or PETSC_DETERMINE to have calculated if m is given)
3881dfb205c3SBarry Smith .  N - number of global columns (or PETSC_DETERMINE to have calculated if n is given)
3882dfb205c3SBarry Smith .   i - row indices
3883dfb205c3SBarry Smith .   j - column indices
3884dfb205c3SBarry Smith -   a - matrix values
3885dfb205c3SBarry Smith 
3886dfb205c3SBarry Smith    Output Parameter:
3887dfb205c3SBarry Smith .   mat - the matrix
3888dfb205c3SBarry Smith 
3889dfb205c3SBarry Smith    Level: intermediate
3890dfb205c3SBarry Smith 
3891dfb205c3SBarry Smith    Notes:
3892dfb205c3SBarry Smith        The i, j, and a arrays ARE copied by this routine into the internal format used by PETSc;
3893dfb205c3SBarry Smith      thus you CANNOT change the matrix entries by changing the values of a[] after you have
3894dfb205c3SBarry Smith      called this routine. Use MatCreateMPIAIJWithSplitArrays() to avoid needing to copy the arrays.
3895dfb205c3SBarry Smith 
38963adadaf3SJed Brown      The order of the entries in values is the same as the block compressed sparse row storage format; that is, it is
38973adadaf3SJed Brown      the same as a three dimensional array in Fortran values(bs,bs,nnz) that contains the first column of the first
38983adadaf3SJed Brown      block, followed by the second column of the first block etc etc.  That is, the blocks are contiguous in memory
38993adadaf3SJed Brown      with column-major ordering within blocks.
39003adadaf3SJed Brown 
3901dfb205c3SBarry Smith        The i and j indices are 0 based, and i indices are indices corresponding to the local j array.
3902dfb205c3SBarry Smith 
3903dfb205c3SBarry Smith .keywords: matrix, aij, compressed row, sparse, parallel
3904dfb205c3SBarry Smith 
3905dfb205c3SBarry Smith .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatMPIAIJSetPreallocation(), MatMPIAIJSetPreallocationCSR(),
390669b1f4b7SBarry Smith           MPIAIJ, MatCreateAIJ(), MatCreateMPIAIJWithSplitArrays()
3907dfb205c3SBarry Smith @*/
39087087cfbeSBarry Smith PetscErrorCode  MatCreateMPIBAIJWithArrays(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,const PetscInt i[],const PetscInt j[],const PetscScalar a[],Mat *mat)
3909dfb205c3SBarry Smith {
3910dfb205c3SBarry Smith   PetscErrorCode ierr;
3911dfb205c3SBarry Smith 
3912dfb205c3SBarry Smith   PetscFunctionBegin;
3913f23aa3ddSBarry Smith   if (i[0]) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"i (row indices) must start with 0");
3914dfb205c3SBarry Smith   if (m < 0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"local number of rows (m) cannot be PETSC_DECIDE, or negative");
3915dfb205c3SBarry Smith   ierr = MatCreate(comm,mat);CHKERRQ(ierr);
3916dfb205c3SBarry Smith   ierr = MatSetSizes(*mat,m,n,M,N);CHKERRQ(ierr);
3917dfb205c3SBarry Smith   ierr = MatSetType(*mat,MATMPISBAIJ);CHKERRQ(ierr);
3918d47bf9aaSJed Brown   ierr = MatSetOption(*mat,MAT_ROW_ORIENTED,PETSC_FALSE);CHKERRQ(ierr);
3919dfb205c3SBarry Smith   ierr = MatMPIBAIJSetPreallocationCSR(*mat,bs,i,j,a);CHKERRQ(ierr);
3920d47bf9aaSJed Brown   ierr = MatSetOption(*mat,MAT_ROW_ORIENTED,PETSC_TRUE);CHKERRQ(ierr);
3921dfb205c3SBarry Smith   PetscFunctionReturn(0);
3922dfb205c3SBarry Smith }
3923