1*b0a32e0cSBarry Smith /*$Id: mpibaij.c,v 1.207 2000/11/28 17:29:23 bsmith Exp bsmith $*/ 279bdfe76SSatish Balay 3e090d566SSatish Balay #include "src/mat/impls/baij/mpi/mpibaij.h" /*I "petscmat.h" I*/ 4c16cb8f2SBarry Smith #include "src/vec/vecimpl.h" 579bdfe76SSatish Balay 6ca44d042SBarry Smith EXTERN int MatSetUpMultiply_MPIBAIJ(Mat); 7ca44d042SBarry Smith EXTERN int DisAssemble_MPIBAIJ(Mat); 8ca44d042SBarry Smith EXTERN int MatIncreaseOverlap_MPIBAIJ(Mat,int,IS *,int); 9ca44d042SBarry Smith EXTERN int MatGetSubMatrices_MPIBAIJ(Mat,int,IS *,IS *,MatReuse,Mat **); 10ca44d042SBarry Smith EXTERN int MatGetValues_SeqBAIJ(Mat,int,int *,int,int *,Scalar *); 11ca44d042SBarry Smith EXTERN int MatSetValues_SeqBAIJ(Mat,int,int *,int,int *,Scalar *,InsertMode); 12ca44d042SBarry Smith EXTERN int MatSetValuesBlocked_SeqBAIJ(Mat,int,int*,int,int*,Scalar*,InsertMode); 13ca44d042SBarry Smith EXTERN int MatGetRow_SeqBAIJ(Mat,int,int*,int**,Scalar**); 14ca44d042SBarry Smith EXTERN int MatRestoreRow_SeqBAIJ(Mat,int,int*,int**,Scalar**); 15ca44d042SBarry Smith EXTERN int MatPrintHelp_SeqBAIJ(Mat); 16ca44d042SBarry Smith EXTERN int MatZeroRows_SeqBAIJ(Mat,IS,Scalar*); 1793fea6afSBarry Smith 1893fea6afSBarry Smith /* UGLY, ugly, ugly 1993fea6afSBarry Smith When MatScalar == Scalar the function MatSetValuesBlocked_MPIBAIJ_MatScalar() does 2093fea6afSBarry Smith not exist. Otherwise ..._MatScalar() takes matrix elements in single precision and 2193fea6afSBarry Smith inserts them into the single precision data structure. The function MatSetValuesBlocked_MPIBAIJ() 2293fea6afSBarry Smith converts the entries into single precision and then calls ..._MatScalar() to put them 2393fea6afSBarry Smith into the single precision data structures. 2493fea6afSBarry Smith */ 2593fea6afSBarry Smith #if defined(PETSC_USE_MAT_SINGLE) 26ca44d042SBarry Smith EXTERN int MatSetValuesBlocked_SeqBAIJ_MatScalar(Mat,int,int*,int,int*,MatScalar*,InsertMode); 27ca44d042SBarry Smith EXTERN int MatSetValues_MPIBAIJ_MatScalar(Mat,int,int*,int,int*,MatScalar*,InsertMode); 28ca44d042SBarry Smith EXTERN int MatSetValuesBlocked_MPIBAIJ_MatScalar(Mat,int,int*,int,int*,MatScalar*,InsertMode); 29ca44d042SBarry Smith EXTERN int MatSetValues_MPIBAIJ_HT_MatScalar(Mat,int,int*,int,int*,MatScalar*,InsertMode); 30ca44d042SBarry Smith EXTERN int MatSetValuesBlocked_MPIBAIJ_HT_MatScalar(Mat,int,int*,int,int*,MatScalar*,InsertMode); 3193fea6afSBarry Smith #else 326fa18ffdSBarry Smith #define MatSetValuesBlocked_SeqBAIJ_MatScalar MatSetValuesBlocked_SeqBAIJ 3393fea6afSBarry Smith #define MatSetValues_MPIBAIJ_MatScalar MatSetValues_MPIBAIJ 3493fea6afSBarry Smith #define MatSetValuesBlocked_MPIBAIJ_MatScalar MatSetValuesBlocked_MPIBAIJ 356fa18ffdSBarry Smith #define MatSetValues_MPIBAIJ_HT_MatScalar MatSetValues_MPIBAIJ_HT 366fa18ffdSBarry Smith #define MatSetValuesBlocked_MPIBAIJ_HT_MatScalar MatSetValuesBlocked_MPIBAIJ_HT 3793fea6afSBarry Smith #endif 383b2fbd54SBarry Smith 397843d17aSBarry Smith #undef __FUNC__ 40*b0a32e0cSBarry Smith #define __FUNC__ "MatGetRowMax_MPIBAIJ" 417843d17aSBarry Smith int MatGetRowMax_MPIBAIJ(Mat A,Vec v) 427843d17aSBarry Smith { 437843d17aSBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 447843d17aSBarry Smith int ierr,i; 45273d9f13SBarry Smith Scalar *va,*vb; 467843d17aSBarry Smith Vec vtmp; 477843d17aSBarry Smith 487843d17aSBarry Smith PetscFunctionBegin; 497843d17aSBarry Smith 507843d17aSBarry Smith ierr = MatGetRowMax(a->A,v);CHKERRQ(ierr); 51273d9f13SBarry Smith ierr = VecGetArray(v,&va);CHKERRQ(ierr); 527843d17aSBarry Smith 53273d9f13SBarry Smith ierr = VecCreateSeq(PETSC_COMM_SELF,A->m,&vtmp);CHKERRA(ierr); 547843d17aSBarry Smith ierr = MatGetRowMax(a->B,vtmp);CHKERRQ(ierr); 55273d9f13SBarry Smith ierr = VecGetArray(vtmp,&vb);CHKERRQ(ierr); 567843d17aSBarry Smith 57273d9f13SBarry Smith for (i=0; i<A->m; i++){ 58273d9f13SBarry Smith if (PetscAbsScalar(va[i]) < PetscAbsScalar(vb[i])) va[i] = vb[i]; 597843d17aSBarry Smith } 607843d17aSBarry Smith 617843d17aSBarry Smith ierr = VecRestoreArray(v,&va);CHKERRQ(ierr); 627843d17aSBarry Smith ierr = VecRestoreArray(vtmp,&vb);CHKERRQ(ierr); 637843d17aSBarry Smith ierr = VecDestroy(vtmp);CHKERRA(ierr); 647843d17aSBarry Smith 657843d17aSBarry Smith PetscFunctionReturn(0); 667843d17aSBarry Smith } 677843d17aSBarry Smith 687fc3c18eSBarry Smith EXTERN_C_BEGIN 697fc3c18eSBarry Smith #undef __FUNC__ 70*b0a32e0cSBarry Smith #define __FUNC__ "MatStoreValues_MPIBAIJ" 717fc3c18eSBarry Smith int MatStoreValues_MPIBAIJ(Mat mat) 727fc3c18eSBarry Smith { 737fc3c18eSBarry Smith Mat_MPIBAIJ *aij = (Mat_MPIBAIJ *)mat->data; 747fc3c18eSBarry Smith int ierr; 757fc3c18eSBarry Smith 767fc3c18eSBarry Smith PetscFunctionBegin; 777fc3c18eSBarry Smith ierr = MatStoreValues(aij->A);CHKERRQ(ierr); 787fc3c18eSBarry Smith ierr = MatStoreValues(aij->B);CHKERRQ(ierr); 797fc3c18eSBarry Smith PetscFunctionReturn(0); 807fc3c18eSBarry Smith } 817fc3c18eSBarry Smith EXTERN_C_END 827fc3c18eSBarry Smith 837fc3c18eSBarry Smith EXTERN_C_BEGIN 847fc3c18eSBarry Smith #undef __FUNC__ 85*b0a32e0cSBarry Smith #define __FUNC__ "MatRetrieveValues_MPIBAIJ" 867fc3c18eSBarry Smith int MatRetrieveValues_MPIBAIJ(Mat mat) 877fc3c18eSBarry Smith { 887fc3c18eSBarry Smith Mat_MPIBAIJ *aij = (Mat_MPIBAIJ *)mat->data; 897fc3c18eSBarry Smith int ierr; 907fc3c18eSBarry Smith 917fc3c18eSBarry Smith PetscFunctionBegin; 927fc3c18eSBarry Smith ierr = MatRetrieveValues(aij->A);CHKERRQ(ierr); 937fc3c18eSBarry Smith ierr = MatRetrieveValues(aij->B);CHKERRQ(ierr); 947fc3c18eSBarry Smith PetscFunctionReturn(0); 957fc3c18eSBarry Smith } 967fc3c18eSBarry Smith EXTERN_C_END 977fc3c18eSBarry Smith 98537820f0SBarry Smith /* 99537820f0SBarry Smith Local utility routine that creates a mapping from the global column 10057b952d6SSatish Balay number to the local number in the off-diagonal part of the local 10157b952d6SSatish Balay storage of the matrix. This is done in a non scable way since the 10257b952d6SSatish Balay length of colmap equals the global matrix length. 10357b952d6SSatish Balay */ 1045615d1e5SSatish Balay #undef __FUNC__ 105*b0a32e0cSBarry Smith #define __FUNC__ "CreateColmap_MPIBAIJ_Private" 10657b952d6SSatish Balay static int CreateColmap_MPIBAIJ_Private(Mat mat) 10757b952d6SSatish Balay { 10857b952d6SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 10957b952d6SSatish Balay Mat_SeqBAIJ *B = (Mat_SeqBAIJ*)baij->B->data; 110dc2900e9SSatish Balay int nbs = B->nbs,i,bs=B->bs,ierr; 11157b952d6SSatish Balay 112d64ed03dSBarry Smith PetscFunctionBegin; 113aa482453SBarry Smith #if defined (PETSC_USE_CTABLE) 114f14a1c24SBarry Smith ierr = PetscTableCreate(baij->nbs,&baij->colmap);CHKERRQ(ierr); 11548e59246SSatish Balay for (i=0; i<nbs; i++){ 1160f5bd95cSBarry Smith ierr = PetscTableAdd(baij->colmap,baij->garray[i]+1,i*bs+1);CHKERRQ(ierr); 11748e59246SSatish Balay } 11848e59246SSatish Balay #else 119*b0a32e0cSBarry Smith baij->colmap = (int*)PetscMalloc((baij->Nbs+1)*sizeof(int));CHKERRQ(ierr); 120*b0a32e0cSBarry Smith PetscLogObjectMemory(mat,baij->Nbs*sizeof(int)); 121549d3d68SSatish Balay ierr = PetscMemzero(baij->colmap,baij->Nbs*sizeof(int));CHKERRQ(ierr); 122928fc39bSSatish Balay for (i=0; i<nbs; i++) baij->colmap[baij->garray[i]] = i*bs+1; 12348e59246SSatish Balay #endif 1243a40ed3dSBarry Smith PetscFunctionReturn(0); 12557b952d6SSatish Balay } 12657b952d6SSatish Balay 12780c1aa95SSatish Balay #define CHUNKSIZE 10 12880c1aa95SSatish Balay 129f5e9677aSSatish Balay #define MatSetValues_SeqBAIJ_A_Private(row,col,value,addv) \ 13080c1aa95SSatish Balay { \ 13180c1aa95SSatish Balay \ 13280c1aa95SSatish Balay brow = row/bs; \ 13380c1aa95SSatish Balay rp = aj + ai[brow]; ap = aa + bs2*ai[brow]; \ 134ac7a638eSSatish Balay rmax = aimax[brow]; nrow = ailen[brow]; \ 13580c1aa95SSatish Balay bcol = col/bs; \ 13680c1aa95SSatish Balay ridx = row % bs; cidx = col % bs; \ 137ab26458aSBarry Smith low = 0; high = nrow; \ 138ab26458aSBarry Smith while (high-low > 3) { \ 139ab26458aSBarry Smith t = (low+high)/2; \ 140ab26458aSBarry Smith if (rp[t] > bcol) high = t; \ 141ab26458aSBarry Smith else low = t; \ 142ab26458aSBarry Smith } \ 143ab26458aSBarry Smith for (_i=low; _i<high; _i++) { \ 14480c1aa95SSatish Balay if (rp[_i] > bcol) break; \ 14580c1aa95SSatish Balay if (rp[_i] == bcol) { \ 14680c1aa95SSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 147eada6651SSatish Balay if (addv == ADD_VALUES) *bap += value; \ 148eada6651SSatish Balay else *bap = value; \ 149ac7a638eSSatish Balay goto a_noinsert; \ 15080c1aa95SSatish Balay } \ 15180c1aa95SSatish Balay } \ 15289280ab3SLois Curfman McInnes if (a->nonew == 1) goto a_noinsert; \ 15329bbc08cSBarry Smith else if (a->nonew == -1) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero into matrix"); \ 15480c1aa95SSatish Balay if (nrow >= rmax) { \ 15580c1aa95SSatish Balay /* there is no extra room in row, therefore enlarge */ \ 15680c1aa95SSatish Balay int new_nz = ai[a->mbs] + CHUNKSIZE,len,*new_i,*new_j; \ 1573eda8832SBarry Smith MatScalar *new_a; \ 15880c1aa95SSatish Balay \ 15929bbc08cSBarry Smith if (a->nonew == -2) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero in the matrix"); \ 16089280ab3SLois Curfman McInnes \ 16180c1aa95SSatish Balay /* malloc new storage space */ \ 1623eda8832SBarry Smith len = new_nz*(sizeof(int)+bs2*sizeof(MatScalar))+(a->mbs+1)*sizeof(int); \ 163*b0a32e0cSBarry Smith ierr = PetscMalloc(len,&( new_a ));CHKERRQ(ierr); \ 16480c1aa95SSatish Balay new_j = (int*)(new_a + bs2*new_nz); \ 16580c1aa95SSatish Balay new_i = new_j + new_nz; \ 16680c1aa95SSatish Balay \ 16780c1aa95SSatish Balay /* copy over old data into new slots */ \ 16880c1aa95SSatish Balay for (ii=0; ii<brow+1; ii++) {new_i[ii] = ai[ii];} \ 16980c1aa95SSatish Balay for (ii=brow+1; ii<a->mbs+1; ii++) {new_i[ii] = ai[ii]+CHUNKSIZE;} \ 170549d3d68SSatish Balay ierr = PetscMemcpy(new_j,aj,(ai[brow]+nrow)*sizeof(int));CHKERRQ(ierr); \ 17180c1aa95SSatish Balay len = (new_nz - CHUNKSIZE - ai[brow] - nrow); \ 1723eda8832SBarry Smith ierr = PetscMemcpy(new_j+ai[brow]+nrow+CHUNKSIZE,aj+ai[brow]+nrow,len*sizeof(int));CHKERRQ(ierr); \ 1733eda8832SBarry Smith ierr = PetscMemcpy(new_a,aa,(ai[brow]+nrow)*bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 174549d3d68SSatish Balay ierr = PetscMemzero(new_a+bs2*(ai[brow]+nrow),bs2*CHUNKSIZE*sizeof(Scalar));CHKERRQ(ierr); \ 175549d3d68SSatish Balay ierr = PetscMemcpy(new_a+bs2*(ai[brow]+nrow+CHUNKSIZE), \ 1763eda8832SBarry Smith aa+bs2*(ai[brow]+nrow),bs2*len*sizeof(MatScalar));CHKERRQ(ierr); \ 17780c1aa95SSatish Balay /* free up old matrix storage */ \ 178606d414cSSatish Balay ierr = PetscFree(a->a);CHKERRQ(ierr); \ 179606d414cSSatish Balay if (!a->singlemalloc) { \ 180606d414cSSatish Balay ierr = PetscFree(a->i);CHKERRQ(ierr); \ 181606d414cSSatish Balay ierr = PetscFree(a->j);CHKERRQ(ierr);\ 182606d414cSSatish Balay } \ 18380c1aa95SSatish Balay aa = a->a = new_a; ai = a->i = new_i; aj = a->j = new_j; \ 1847c922b88SBarry Smith a->singlemalloc = PETSC_TRUE; \ 18580c1aa95SSatish Balay \ 18680c1aa95SSatish Balay rp = aj + ai[brow]; ap = aa + bs2*ai[brow]; \ 187ac7a638eSSatish Balay rmax = aimax[brow] = aimax[brow] + CHUNKSIZE; \ 188*b0a32e0cSBarry Smith PetscLogObjectMemory(A,CHUNKSIZE*(sizeof(int) + bs2*sizeof(MatScalar))); \ 18980c1aa95SSatish Balay a->maxnz += bs2*CHUNKSIZE; \ 19080c1aa95SSatish Balay a->reallocs++; \ 19180c1aa95SSatish Balay a->nz++; \ 19280c1aa95SSatish Balay } \ 19380c1aa95SSatish Balay N = nrow++ - 1; \ 19480c1aa95SSatish Balay /* shift up all the later entries in this row */ \ 19580c1aa95SSatish Balay for (ii=N; ii>=_i; ii--) { \ 19680c1aa95SSatish Balay rp[ii+1] = rp[ii]; \ 1973eda8832SBarry Smith ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 19880c1aa95SSatish Balay } \ 1993eda8832SBarry Smith if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr); } \ 20080c1aa95SSatish Balay rp[_i] = bcol; \ 20180c1aa95SSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 202ac7a638eSSatish Balay a_noinsert:; \ 20380c1aa95SSatish Balay ailen[brow] = nrow; \ 20480c1aa95SSatish Balay } 20557b952d6SSatish Balay 206ac7a638eSSatish Balay #define MatSetValues_SeqBAIJ_B_Private(row,col,value,addv) \ 207ac7a638eSSatish Balay { \ 208ac7a638eSSatish Balay brow = row/bs; \ 209ac7a638eSSatish Balay rp = bj + bi[brow]; ap = ba + bs2*bi[brow]; \ 210ac7a638eSSatish Balay rmax = bimax[brow]; nrow = bilen[brow]; \ 211ac7a638eSSatish Balay bcol = col/bs; \ 212ac7a638eSSatish Balay ridx = row % bs; cidx = col % bs; \ 213ac7a638eSSatish Balay low = 0; high = nrow; \ 214ac7a638eSSatish Balay while (high-low > 3) { \ 215ac7a638eSSatish Balay t = (low+high)/2; \ 216ac7a638eSSatish Balay if (rp[t] > bcol) high = t; \ 217ac7a638eSSatish Balay else low = t; \ 218ac7a638eSSatish Balay } \ 219ac7a638eSSatish Balay for (_i=low; _i<high; _i++) { \ 220ac7a638eSSatish Balay if (rp[_i] > bcol) break; \ 221ac7a638eSSatish Balay if (rp[_i] == bcol) { \ 222ac7a638eSSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 223ac7a638eSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 224ac7a638eSSatish Balay else *bap = value; \ 225ac7a638eSSatish Balay goto b_noinsert; \ 226ac7a638eSSatish Balay } \ 227ac7a638eSSatish Balay } \ 22889280ab3SLois Curfman McInnes if (b->nonew == 1) goto b_noinsert; \ 22929bbc08cSBarry Smith else if (b->nonew == -1) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero into matrix"); \ 230ac7a638eSSatish Balay if (nrow >= rmax) { \ 231ac7a638eSSatish Balay /* there is no extra room in row, therefore enlarge */ \ 23274c639caSSatish Balay int new_nz = bi[b->mbs] + CHUNKSIZE,len,*new_i,*new_j; \ 2333eda8832SBarry Smith MatScalar *new_a; \ 234ac7a638eSSatish Balay \ 23529bbc08cSBarry Smith if (b->nonew == -2) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero in the matrix"); \ 23689280ab3SLois Curfman McInnes \ 237ac7a638eSSatish Balay /* malloc new storage space */ \ 2383eda8832SBarry Smith len = new_nz*(sizeof(int)+bs2*sizeof(MatScalar))+(b->mbs+1)*sizeof(int); \ 239*b0a32e0cSBarry Smith ierr = PetscMalloc(len,&( new_a ));CHKERRQ(ierr); \ 240ac7a638eSSatish Balay new_j = (int*)(new_a + bs2*new_nz); \ 241ac7a638eSSatish Balay new_i = new_j + new_nz; \ 242ac7a638eSSatish Balay \ 243ac7a638eSSatish Balay /* copy over old data into new slots */ \ 244ac7a638eSSatish Balay for (ii=0; ii<brow+1; ii++) {new_i[ii] = bi[ii];} \ 24574c639caSSatish Balay for (ii=brow+1; ii<b->mbs+1; ii++) {new_i[ii] = bi[ii]+CHUNKSIZE;} \ 246549d3d68SSatish Balay ierr = PetscMemcpy(new_j,bj,(bi[brow]+nrow)*sizeof(int));CHKERRQ(ierr); \ 247ac7a638eSSatish Balay len = (new_nz - CHUNKSIZE - bi[brow] - nrow); \ 2483eda8832SBarry Smith ierr = PetscMemcpy(new_j+bi[brow]+nrow+CHUNKSIZE,bj+bi[brow]+nrow,len*sizeof(int));CHKERRQ(ierr); \ 2493eda8832SBarry Smith ierr = PetscMemcpy(new_a,ba,(bi[brow]+nrow)*bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 2503eda8832SBarry Smith ierr = PetscMemzero(new_a+bs2*(bi[brow]+nrow),bs2*CHUNKSIZE*sizeof(MatScalar));CHKERRQ(ierr); \ 251549d3d68SSatish Balay ierr = PetscMemcpy(new_a+bs2*(bi[brow]+nrow+CHUNKSIZE), \ 2523eda8832SBarry Smith ba+bs2*(bi[brow]+nrow),bs2*len*sizeof(MatScalar));CHKERRQ(ierr); \ 253ac7a638eSSatish Balay /* free up old matrix storage */ \ 254606d414cSSatish Balay ierr = PetscFree(b->a);CHKERRQ(ierr); \ 255606d414cSSatish Balay if (!b->singlemalloc) { \ 256606d414cSSatish Balay ierr = PetscFree(b->i);CHKERRQ(ierr); \ 257606d414cSSatish Balay ierr = PetscFree(b->j);CHKERRQ(ierr); \ 258606d414cSSatish Balay } \ 25974c639caSSatish Balay ba = b->a = new_a; bi = b->i = new_i; bj = b->j = new_j; \ 2607c922b88SBarry Smith b->singlemalloc = PETSC_TRUE; \ 261ac7a638eSSatish Balay \ 262ac7a638eSSatish Balay rp = bj + bi[brow]; ap = ba + bs2*bi[brow]; \ 263ac7a638eSSatish Balay rmax = bimax[brow] = bimax[brow] + CHUNKSIZE; \ 264*b0a32e0cSBarry Smith PetscLogObjectMemory(B,CHUNKSIZE*(sizeof(int) + bs2*sizeof(MatScalar))); \ 26574c639caSSatish Balay b->maxnz += bs2*CHUNKSIZE; \ 26674c639caSSatish Balay b->reallocs++; \ 26774c639caSSatish Balay b->nz++; \ 268ac7a638eSSatish Balay } \ 269ac7a638eSSatish Balay N = nrow++ - 1; \ 270ac7a638eSSatish Balay /* shift up all the later entries in this row */ \ 271ac7a638eSSatish Balay for (ii=N; ii>=_i; ii--) { \ 272ac7a638eSSatish Balay rp[ii+1] = rp[ii]; \ 2733eda8832SBarry Smith ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 274ac7a638eSSatish Balay } \ 2753eda8832SBarry Smith if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr);} \ 276ac7a638eSSatish Balay rp[_i] = bcol; \ 277ac7a638eSSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 278ac7a638eSSatish Balay b_noinsert:; \ 279ac7a638eSSatish Balay bilen[brow] = nrow; \ 280ac7a638eSSatish Balay } 281ac7a638eSSatish Balay 28293fea6afSBarry Smith #if defined(PETSC_USE_MAT_SINGLE) 2835615d1e5SSatish Balay #undef __FUNC__ 284*b0a32e0cSBarry Smith #define __FUNC__ "MatSetValues_MPIBAIJ" 285ec1ea8d8SLois Curfman McInnes int MatSetValues_MPIBAIJ(Mat mat,int m,int *im,int n,int *in,Scalar *v,InsertMode addv) 28657b952d6SSatish Balay { 2876fa18ffdSBarry Smith Mat_MPIBAIJ *b = (Mat_MPIBAIJ*)mat->data; 28893fea6afSBarry Smith int ierr,i,N = m*n; 2896fa18ffdSBarry Smith MatScalar *vsingle; 29093fea6afSBarry Smith 29193fea6afSBarry Smith PetscFunctionBegin; 2926fa18ffdSBarry Smith if (N > b->setvalueslen) { 2936fa18ffdSBarry Smith if (b->setvaluescopy) {ierr = PetscFree(b->setvaluescopy);CHKERRQ(ierr);} 294*b0a32e0cSBarry Smith ierr = PetscMalloc(N*sizeof(MatScalar),&( b->setvaluescopy ));CHKERRQ(ierr); 2956fa18ffdSBarry Smith b->setvalueslen = N; 2966fa18ffdSBarry Smith } 2976fa18ffdSBarry Smith vsingle = b->setvaluescopy; 2986fa18ffdSBarry Smith 29993fea6afSBarry Smith for (i=0; i<N; i++) { 30093fea6afSBarry Smith vsingle[i] = v[i]; 30193fea6afSBarry Smith } 30293fea6afSBarry Smith ierr = MatSetValues_MPIBAIJ_MatScalar(mat,m,im,n,in,vsingle,addv);CHKERRQ(ierr); 30393fea6afSBarry Smith PetscFunctionReturn(0); 30493fea6afSBarry Smith } 30593fea6afSBarry Smith 30693fea6afSBarry Smith #undef __FUNC__ 307*b0a32e0cSBarry Smith #define __FUNC__ "MatSetValuesBlocked_MPIBAIJ" 30893fea6afSBarry Smith int MatSetValuesBlocked_MPIBAIJ(Mat mat,int m,int *im,int n,int *in,Scalar *v,InsertMode addv) 30993fea6afSBarry Smith { 3106fa18ffdSBarry Smith Mat_MPIBAIJ *b = (Mat_MPIBAIJ*)mat->data; 3116fa18ffdSBarry Smith int ierr,i,N = m*n*b->bs2; 3126fa18ffdSBarry Smith MatScalar *vsingle; 31393fea6afSBarry Smith 31493fea6afSBarry Smith PetscFunctionBegin; 3156fa18ffdSBarry Smith if (N > b->setvalueslen) { 3166fa18ffdSBarry Smith if (b->setvaluescopy) {ierr = PetscFree(b->setvaluescopy);CHKERRQ(ierr);} 317*b0a32e0cSBarry Smith ierr = PetscMalloc(N*sizeof(MatScalar),&( b->setvaluescopy ));CHKERRQ(ierr); 3186fa18ffdSBarry Smith b->setvalueslen = N; 3196fa18ffdSBarry Smith } 3206fa18ffdSBarry Smith vsingle = b->setvaluescopy; 32193fea6afSBarry Smith for (i=0; i<N; i++) { 32293fea6afSBarry Smith vsingle[i] = v[i]; 32393fea6afSBarry Smith } 32493fea6afSBarry Smith ierr = MatSetValuesBlocked_MPIBAIJ_MatScalar(mat,m,im,n,in,vsingle,addv);CHKERRQ(ierr); 32593fea6afSBarry Smith PetscFunctionReturn(0); 32693fea6afSBarry Smith } 3276fa18ffdSBarry Smith 3286fa18ffdSBarry Smith #undef __FUNC__ 329*b0a32e0cSBarry Smith #define __FUNC__ "MatSetValues_MPIBAIJ_HT" 3306fa18ffdSBarry Smith int MatSetValues_MPIBAIJ_HT(Mat mat,int m,int *im,int n,int *in,Scalar *v,InsertMode addv) 3316fa18ffdSBarry Smith { 3326fa18ffdSBarry Smith Mat_MPIBAIJ *b = (Mat_MPIBAIJ*)mat->data; 3336fa18ffdSBarry Smith int ierr,i,N = m*n; 3346fa18ffdSBarry Smith MatScalar *vsingle; 3356fa18ffdSBarry Smith 3366fa18ffdSBarry Smith PetscFunctionBegin; 3376fa18ffdSBarry Smith if (N > b->setvalueslen) { 3386fa18ffdSBarry Smith if (b->setvaluescopy) {ierr = PetscFree(b->setvaluescopy);CHKERRQ(ierr);} 339*b0a32e0cSBarry Smith ierr = PetscMalloc(N*sizeof(MatScalar),&( b->setvaluescopy ));CHKERRQ(ierr); 3406fa18ffdSBarry Smith b->setvalueslen = N; 3416fa18ffdSBarry Smith } 3426fa18ffdSBarry Smith vsingle = b->setvaluescopy; 3436fa18ffdSBarry Smith for (i=0; i<N; i++) { 3446fa18ffdSBarry Smith vsingle[i] = v[i]; 3456fa18ffdSBarry Smith } 3466fa18ffdSBarry Smith ierr = MatSetValues_MPIBAIJ_HT_MatScalar(mat,m,im,n,in,vsingle,addv);CHKERRQ(ierr); 3476fa18ffdSBarry Smith PetscFunctionReturn(0); 3486fa18ffdSBarry Smith } 3496fa18ffdSBarry Smith 3506fa18ffdSBarry Smith #undef __FUNC__ 351*b0a32e0cSBarry Smith #define __FUNC__ "MatSetValuesBlocked_MPIBAIJ_HT" 3526fa18ffdSBarry Smith int MatSetValuesBlocked_MPIBAIJ_HT(Mat mat,int m,int *im,int n,int *in,Scalar *v,InsertMode addv) 3536fa18ffdSBarry Smith { 3546fa18ffdSBarry Smith Mat_MPIBAIJ *b = (Mat_MPIBAIJ*)mat->data; 3556fa18ffdSBarry Smith int ierr,i,N = m*n*b->bs2; 3566fa18ffdSBarry Smith MatScalar *vsingle; 3576fa18ffdSBarry Smith 3586fa18ffdSBarry Smith PetscFunctionBegin; 3596fa18ffdSBarry Smith if (N > b->setvalueslen) { 3606fa18ffdSBarry Smith if (b->setvaluescopy) {ierr = PetscFree(b->setvaluescopy);CHKERRQ(ierr);} 361*b0a32e0cSBarry Smith ierr = PetscMalloc(N*sizeof(MatScalar),&( b->setvaluescopy ));CHKERRQ(ierr); 3626fa18ffdSBarry Smith b->setvalueslen = N; 3636fa18ffdSBarry Smith } 3646fa18ffdSBarry Smith vsingle = b->setvaluescopy; 3656fa18ffdSBarry Smith for (i=0; i<N; i++) { 3666fa18ffdSBarry Smith vsingle[i] = v[i]; 3676fa18ffdSBarry Smith } 3686fa18ffdSBarry Smith ierr = MatSetValuesBlocked_MPIBAIJ_HT_MatScalar(mat,m,im,n,in,vsingle,addv);CHKERRQ(ierr); 3696fa18ffdSBarry Smith PetscFunctionReturn(0); 3706fa18ffdSBarry Smith } 37193fea6afSBarry Smith #endif 37293fea6afSBarry Smith 37393fea6afSBarry Smith #undef __FUNC__ 374*b0a32e0cSBarry Smith #define __FUNC__ "MatSetValues_MPIBAIJ" 37593fea6afSBarry Smith int MatSetValues_MPIBAIJ_MatScalar(Mat mat,int m,int *im,int n,int *in,MatScalar *v,InsertMode addv) 37693fea6afSBarry Smith { 37757b952d6SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 37893fea6afSBarry Smith MatScalar value; 379273d9f13SBarry Smith PetscTruth roworiented = baij->roworiented; 3804fa0d573SSatish Balay int ierr,i,j,row,col; 381273d9f13SBarry Smith int rstart_orig=baij->rstart_bs; 3824fa0d573SSatish Balay int rend_orig=baij->rend_bs,cstart_orig=baij->cstart_bs; 3834fa0d573SSatish Balay int cend_orig=baij->cend_bs,bs=baij->bs; 38457b952d6SSatish Balay 385eada6651SSatish Balay /* Some Variables required in the macro */ 38680c1aa95SSatish Balay Mat A = baij->A; 38780c1aa95SSatish Balay Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)(A)->data; 388ac7a638eSSatish Balay int *aimax=a->imax,*ai=a->i,*ailen=a->ilen,*aj=a->j; 3893eda8832SBarry Smith MatScalar *aa=a->a; 390ac7a638eSSatish Balay 391ac7a638eSSatish Balay Mat B = baij->B; 392ac7a638eSSatish Balay Mat_SeqBAIJ *b = (Mat_SeqBAIJ*)(B)->data; 393ac7a638eSSatish Balay int *bimax=b->imax,*bi=b->i,*bilen=b->ilen,*bj=b->j; 3943eda8832SBarry Smith MatScalar *ba=b->a; 395ac7a638eSSatish Balay 396ac7a638eSSatish Balay int *rp,ii,nrow,_i,rmax,N,brow,bcol; 397ab26458aSBarry Smith int low,high,t,ridx,cidx,bs2=a->bs2; 3983eda8832SBarry Smith MatScalar *ap,*bap; 39980c1aa95SSatish Balay 400d64ed03dSBarry Smith PetscFunctionBegin; 40157b952d6SSatish Balay for (i=0; i<m; i++) { 4025ef9f2a5SBarry Smith if (im[i] < 0) continue; 403aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g) 404273d9f13SBarry Smith if (im[i] >= mat->M) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Row too large"); 405639f9d9dSBarry Smith #endif 40657b952d6SSatish Balay if (im[i] >= rstart_orig && im[i] < rend_orig) { 40757b952d6SSatish Balay row = im[i] - rstart_orig; 40857b952d6SSatish Balay for (j=0; j<n; j++) { 40957b952d6SSatish Balay if (in[j] >= cstart_orig && in[j] < cend_orig){ 41057b952d6SSatish Balay col = in[j] - cstart_orig; 41157b952d6SSatish Balay if (roworiented) value = v[i*n+j]; else value = v[i+j*m]; 412f5e9677aSSatish Balay MatSetValues_SeqBAIJ_A_Private(row,col,value,addv); 41380c1aa95SSatish Balay /* ierr = MatSetValues_SeqBAIJ(baij->A,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 41473959e64SBarry Smith } else if (in[j] < 0) continue; 415aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g) 416273d9f13SBarry Smith else if (in[j] >= mat->N) {SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Column too large");} 417639f9d9dSBarry Smith #endif 41857b952d6SSatish Balay else { 41957b952d6SSatish Balay if (mat->was_assembled) { 420905e6a2fSBarry Smith if (!baij->colmap) { 421905e6a2fSBarry Smith ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 422905e6a2fSBarry Smith } 423aa482453SBarry Smith #if defined (PETSC_USE_CTABLE) 4240f5bd95cSBarry Smith ierr = PetscTableFind(baij->colmap,in[j]/bs + 1,&col);CHKERRQ(ierr); 425fa46199cSSatish Balay col = col - 1 + in[j]%bs; 42648e59246SSatish Balay #else 427905e6a2fSBarry Smith col = baij->colmap[in[j]/bs] - 1 + in[j]%bs; 42848e59246SSatish Balay #endif 42957b952d6SSatish Balay if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) { 43057b952d6SSatish Balay ierr = DisAssemble_MPIBAIJ(mat);CHKERRQ(ierr); 43157b952d6SSatish Balay col = in[j]; 4329bf004c3SSatish Balay /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */ 4339bf004c3SSatish Balay B = baij->B; 4349bf004c3SSatish Balay b = (Mat_SeqBAIJ*)(B)->data; 4359bf004c3SSatish Balay bimax=b->imax;bi=b->i;bilen=b->ilen;bj=b->j; 4369bf004c3SSatish Balay ba=b->a; 43757b952d6SSatish Balay } 438d64ed03dSBarry Smith } else col = in[j]; 43957b952d6SSatish Balay if (roworiented) value = v[i*n+j]; else value = v[i+j*m]; 440ac7a638eSSatish Balay MatSetValues_SeqBAIJ_B_Private(row,col,value,addv); 441ac7a638eSSatish Balay /* ierr = MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 44257b952d6SSatish Balay } 44357b952d6SSatish Balay } 444d64ed03dSBarry Smith } else { 44590f02eecSBarry Smith if (!baij->donotstash) { 446ff2fd236SBarry Smith if (roworiented) { 4476fa18ffdSBarry Smith ierr = MatStashValuesRow_Private(&mat->stash,im[i],n,in,v+i*n);CHKERRQ(ierr); 448ff2fd236SBarry Smith } else { 4496fa18ffdSBarry Smith ierr = MatStashValuesCol_Private(&mat->stash,im[i],n,in,v+i,m);CHKERRQ(ierr); 45057b952d6SSatish Balay } 45157b952d6SSatish Balay } 45257b952d6SSatish Balay } 45390f02eecSBarry Smith } 4543a40ed3dSBarry Smith PetscFunctionReturn(0); 45557b952d6SSatish Balay } 45657b952d6SSatish Balay 457ab26458aSBarry Smith #undef __FUNC__ 458*b0a32e0cSBarry Smith #define __FUNC__ "MatSetValuesBlocked_MPIBAIJ" 45993fea6afSBarry Smith int MatSetValuesBlocked_MPIBAIJ_MatScalar(Mat mat,int m,int *im,int n,int *in,MatScalar *v,InsertMode addv) 460ab26458aSBarry Smith { 461ab26458aSBarry Smith Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 46293fea6afSBarry Smith MatScalar *value,*barray=baij->barray; 463273d9f13SBarry Smith PetscTruth roworiented = baij->roworiented; 464273d9f13SBarry Smith int ierr,i,j,ii,jj,row,col,rstart=baij->rstart; 465ab26458aSBarry Smith int rend=baij->rend,cstart=baij->cstart,stepval; 466ab26458aSBarry Smith int cend=baij->cend,bs=baij->bs,bs2=baij->bs2; 467ab26458aSBarry Smith 468b16ae2b1SBarry Smith PetscFunctionBegin; 46930793edcSSatish Balay if(!barray) { 470*b0a32e0cSBarry Smith baij->barray =ierr = PetscMalloc(bs2*sizeof(MatScalar),&( barray ));CHKERRQ(ierr); 47130793edcSSatish Balay } 47230793edcSSatish Balay 473ab26458aSBarry Smith if (roworiented) { 474ab26458aSBarry Smith stepval = (n-1)*bs; 475ab26458aSBarry Smith } else { 476ab26458aSBarry Smith stepval = (m-1)*bs; 477ab26458aSBarry Smith } 478ab26458aSBarry Smith for (i=0; i<m; i++) { 4795ef9f2a5SBarry Smith if (im[i] < 0) continue; 480aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g) 48129bbc08cSBarry Smith if (im[i] >= baij->Mbs) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large, row %d max %d",im[i],baij->Mbs); 482ab26458aSBarry Smith #endif 483ab26458aSBarry Smith if (im[i] >= rstart && im[i] < rend) { 484ab26458aSBarry Smith row = im[i] - rstart; 485ab26458aSBarry Smith for (j=0; j<n; j++) { 48615b57d14SSatish Balay /* If NumCol = 1 then a copy is not required */ 48715b57d14SSatish Balay if ((roworiented) && (n == 1)) { 48815b57d14SSatish Balay barray = v + i*bs2; 48915b57d14SSatish Balay } else if((!roworiented) && (m == 1)) { 49015b57d14SSatish Balay barray = v + j*bs2; 49115b57d14SSatish Balay } else { /* Here a copy is required */ 492ab26458aSBarry Smith if (roworiented) { 493ab26458aSBarry Smith value = v + i*(stepval+bs)*bs + j*bs; 494ab26458aSBarry Smith } else { 495ab26458aSBarry Smith value = v + j*(stepval+bs)*bs + i*bs; 496abef11f7SSatish Balay } 49747513183SBarry Smith for (ii=0; ii<bs; ii++,value+=stepval) { 49847513183SBarry Smith for (jj=0; jj<bs; jj++) { 49930793edcSSatish Balay *barray++ = *value++; 50047513183SBarry Smith } 50147513183SBarry Smith } 50230793edcSSatish Balay barray -=bs2; 50315b57d14SSatish Balay } 504abef11f7SSatish Balay 505abef11f7SSatish Balay if (in[j] >= cstart && in[j] < cend){ 506abef11f7SSatish Balay col = in[j] - cstart; 50793fea6afSBarry Smith ierr = MatSetValuesBlocked_SeqBAIJ_MatScalar(baij->A,1,&row,1,&col,barray,addv);CHKERRQ(ierr); 508ab26458aSBarry Smith } 5095ef9f2a5SBarry Smith else if (in[j] < 0) continue; 510aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g) 51129bbc08cSBarry Smith else if (in[j] >= baij->Nbs) {SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large, col %d max %d",in[j],baij->Nbs);} 512ab26458aSBarry Smith #endif 513ab26458aSBarry Smith else { 514ab26458aSBarry Smith if (mat->was_assembled) { 515ab26458aSBarry Smith if (!baij->colmap) { 516ab26458aSBarry Smith ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 517ab26458aSBarry Smith } 518a5eb4965SSatish Balay 519aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g) 520aa482453SBarry Smith #if defined (PETSC_USE_CTABLE) 521fa46199cSSatish Balay { int data; 5220f5bd95cSBarry Smith ierr = PetscTableFind(baij->colmap,in[j]+1,&data);CHKERRQ(ierr); 52329bbc08cSBarry Smith if ((data - 1) % bs) SETERRQ(PETSC_ERR_PLIB,"Incorrect colmap"); 524fa46199cSSatish Balay } 52548e59246SSatish Balay #else 52629bbc08cSBarry Smith if ((baij->colmap[in[j]] - 1) % bs) SETERRQ(PETSC_ERR_PLIB,"Incorrect colmap"); 527a5eb4965SSatish Balay #endif 52848e59246SSatish Balay #endif 529aa482453SBarry Smith #if defined (PETSC_USE_CTABLE) 5300f5bd95cSBarry Smith ierr = PetscTableFind(baij->colmap,in[j]+1,&col);CHKERRQ(ierr); 531fa46199cSSatish Balay col = (col - 1)/bs; 53248e59246SSatish Balay #else 533a5eb4965SSatish Balay col = (baij->colmap[in[j]] - 1)/bs; 53448e59246SSatish Balay #endif 535ab26458aSBarry Smith if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) { 536ab26458aSBarry Smith ierr = DisAssemble_MPIBAIJ(mat);CHKERRQ(ierr); 537ab26458aSBarry Smith col = in[j]; 538ab26458aSBarry Smith } 539ab26458aSBarry Smith } 540ab26458aSBarry Smith else col = in[j]; 54193fea6afSBarry Smith ierr = MatSetValuesBlocked_SeqBAIJ_MatScalar(baij->B,1,&row,1,&col,barray,addv);CHKERRQ(ierr); 542ab26458aSBarry Smith } 543ab26458aSBarry Smith } 544d64ed03dSBarry Smith } else { 545ab26458aSBarry Smith if (!baij->donotstash) { 546ff2fd236SBarry Smith if (roworiented) { 5476fa18ffdSBarry Smith ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 548ff2fd236SBarry Smith } else { 5496fa18ffdSBarry Smith ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 550ff2fd236SBarry Smith } 551abef11f7SSatish Balay } 552ab26458aSBarry Smith } 553ab26458aSBarry Smith } 5543a40ed3dSBarry Smith PetscFunctionReturn(0); 555ab26458aSBarry Smith } 5566fa18ffdSBarry Smith 5570bdbc534SSatish Balay #define HASH_KEY 0.6180339887 558c2760754SSatish Balay #define HASH(size,key,tmp) (tmp = (key)*HASH_KEY,(int)((size)*(tmp-(int)tmp))) 5596fa18ffdSBarry Smith /* #define HASH(size,key) ((int)((size)*fmod(((key)*HASH_KEY),1))) */ 560c2760754SSatish Balay /* #define HASH(size,key,tmp) ((int)((size)*fmod(((key)*HASH_KEY),1))) */ 5615615d1e5SSatish Balay #undef __FUNC__ 562*b0a32e0cSBarry Smith #define __FUNC__ "MatSetValues_MPIBAIJ_HT_MatScalar" 5636fa18ffdSBarry Smith int MatSetValues_MPIBAIJ_HT_MatScalar(Mat mat,int m,int *im,int n,int *in,MatScalar *v,InsertMode addv) 5640bdbc534SSatish Balay { 5650bdbc534SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 566273d9f13SBarry Smith PetscTruth roworiented = baij->roworiented; 5670bdbc534SSatish Balay int ierr,i,j,row,col; 568273d9f13SBarry Smith int rstart_orig=baij->rstart_bs; 569c2760754SSatish Balay int rend_orig=baij->rend_bs,Nbs=baij->Nbs; 570c2760754SSatish Balay int h1,key,size=baij->ht_size,bs=baij->bs,*HT=baij->ht,idx; 571329f5518SBarry Smith PetscReal tmp; 5723eda8832SBarry Smith MatScalar **HD = baij->hd,value; 573aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g) 5744a15367fSSatish Balay int total_ct=baij->ht_total_ct,insert_ct=baij->ht_insert_ct; 5754a15367fSSatish Balay #endif 5760bdbc534SSatish Balay 5770bdbc534SSatish Balay PetscFunctionBegin; 5780bdbc534SSatish Balay 5790bdbc534SSatish Balay for (i=0; i<m; i++) { 580aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g) 58129bbc08cSBarry Smith if (im[i] < 0) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Negative row"); 582273d9f13SBarry Smith if (im[i] >= mat->M) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Row too large"); 5830bdbc534SSatish Balay #endif 5840bdbc534SSatish Balay row = im[i]; 585c2760754SSatish Balay if (row >= rstart_orig && row < rend_orig) { 5860bdbc534SSatish Balay for (j=0; j<n; j++) { 5870bdbc534SSatish Balay col = in[j]; 5886fa18ffdSBarry Smith if (roworiented) value = v[i*n+j]; else value = v[i+j*m]; 5890bdbc534SSatish Balay /* Look up into the Hash Table */ 590c2760754SSatish Balay key = (row/bs)*Nbs+(col/bs)+1; 591c2760754SSatish Balay h1 = HASH(size,key,tmp); 5920bdbc534SSatish Balay 593c2760754SSatish Balay 594c2760754SSatish Balay idx = h1; 595aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g) 596187ce0cbSSatish Balay insert_ct++; 597187ce0cbSSatish Balay total_ct++; 598187ce0cbSSatish Balay if (HT[idx] != key) { 599187ce0cbSSatish Balay for (idx=h1; (idx<size) && (HT[idx]!=key); idx++,total_ct++); 600187ce0cbSSatish Balay if (idx == size) { 601187ce0cbSSatish Balay for (idx=0; (idx<h1) && (HT[idx]!=key); idx++,total_ct++); 602187ce0cbSSatish Balay if (idx == h1) { 60329bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"(row,col) has no entry in the hash table"); 604187ce0cbSSatish Balay } 605187ce0cbSSatish Balay } 606187ce0cbSSatish Balay } 607187ce0cbSSatish Balay #else 608c2760754SSatish Balay if (HT[idx] != key) { 609c2760754SSatish Balay for (idx=h1; (idx<size) && (HT[idx]!=key); idx++); 610c2760754SSatish Balay if (idx == size) { 611c2760754SSatish Balay for (idx=0; (idx<h1) && (HT[idx]!=key); idx++); 612c2760754SSatish Balay if (idx == h1) { 61329bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"(row,col) has no entry in the hash table"); 614c2760754SSatish Balay } 615c2760754SSatish Balay } 616c2760754SSatish Balay } 617187ce0cbSSatish Balay #endif 618c2760754SSatish Balay /* A HASH table entry is found, so insert the values at the correct address */ 619c2760754SSatish Balay if (addv == ADD_VALUES) *(HD[idx]+ (col % bs)*bs + (row % bs)) += value; 620c2760754SSatish Balay else *(HD[idx]+ (col % bs)*bs + (row % bs)) = value; 6210bdbc534SSatish Balay } 6220bdbc534SSatish Balay } else { 6230bdbc534SSatish Balay if (!baij->donotstash) { 624ff2fd236SBarry Smith if (roworiented) { 6258798bf22SSatish Balay ierr = MatStashValuesRow_Private(&mat->stash,im[i],n,in,v+i*n);CHKERRQ(ierr); 626ff2fd236SBarry Smith } else { 6278798bf22SSatish Balay ierr = MatStashValuesCol_Private(&mat->stash,im[i],n,in,v+i,m);CHKERRQ(ierr); 6280bdbc534SSatish Balay } 6290bdbc534SSatish Balay } 6300bdbc534SSatish Balay } 6310bdbc534SSatish Balay } 632aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g) 633187ce0cbSSatish Balay baij->ht_total_ct = total_ct; 634187ce0cbSSatish Balay baij->ht_insert_ct = insert_ct; 635187ce0cbSSatish Balay #endif 6360bdbc534SSatish Balay PetscFunctionReturn(0); 6370bdbc534SSatish Balay } 6380bdbc534SSatish Balay 6390bdbc534SSatish Balay #undef __FUNC__ 640*b0a32e0cSBarry Smith #define __FUNC__ "MatSetValuesBlocked_MPIBAIJ_HT_MatScalar" 6416fa18ffdSBarry Smith int MatSetValuesBlocked_MPIBAIJ_HT_MatScalar(Mat mat,int m,int *im,int n,int *in,MatScalar *v,InsertMode addv) 6420bdbc534SSatish Balay { 6430bdbc534SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 644273d9f13SBarry Smith PetscTruth roworiented = baij->roworiented; 6458798bf22SSatish Balay int ierr,i,j,ii,jj,row,col; 646273d9f13SBarry Smith int rstart=baij->rstart ; 647b4cc0f5aSSatish Balay int rend=baij->rend,stepval,bs=baij->bs,bs2=baij->bs2; 648c2760754SSatish Balay int h1,key,size=baij->ht_size,idx,*HT=baij->ht,Nbs=baij->Nbs; 649329f5518SBarry Smith PetscReal tmp; 6503eda8832SBarry Smith MatScalar **HD = baij->hd,*baij_a; 6516fa18ffdSBarry Smith MatScalar *v_t,*value; 652aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g) 6534a15367fSSatish Balay int total_ct=baij->ht_total_ct,insert_ct=baij->ht_insert_ct; 6544a15367fSSatish Balay #endif 6550bdbc534SSatish Balay 656d0a41580SSatish Balay PetscFunctionBegin; 657d0a41580SSatish Balay 6580bdbc534SSatish Balay if (roworiented) { 6590bdbc534SSatish Balay stepval = (n-1)*bs; 6600bdbc534SSatish Balay } else { 6610bdbc534SSatish Balay stepval = (m-1)*bs; 6620bdbc534SSatish Balay } 6630bdbc534SSatish Balay for (i=0; i<m; i++) { 664aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g) 66529bbc08cSBarry Smith if (im[i] < 0) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Negative row"); 66629bbc08cSBarry Smith if (im[i] >= baij->Mbs) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Row too large"); 6670bdbc534SSatish Balay #endif 6680bdbc534SSatish Balay row = im[i]; 669187ce0cbSSatish Balay v_t = v + i*bs2; 670c2760754SSatish Balay if (row >= rstart && row < rend) { 6710bdbc534SSatish Balay for (j=0; j<n; j++) { 6720bdbc534SSatish Balay col = in[j]; 6730bdbc534SSatish Balay 6740bdbc534SSatish Balay /* Look up into the Hash Table */ 675c2760754SSatish Balay key = row*Nbs+col+1; 676c2760754SSatish Balay h1 = HASH(size,key,tmp); 6770bdbc534SSatish Balay 678c2760754SSatish Balay idx = h1; 679aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g) 680187ce0cbSSatish Balay total_ct++; 681187ce0cbSSatish Balay insert_ct++; 682187ce0cbSSatish Balay if (HT[idx] != key) { 683187ce0cbSSatish Balay for (idx=h1; (idx<size) && (HT[idx]!=key); idx++,total_ct++); 684187ce0cbSSatish Balay if (idx == size) { 685187ce0cbSSatish Balay for (idx=0; (idx<h1) && (HT[idx]!=key); idx++,total_ct++); 686187ce0cbSSatish Balay if (idx == h1) { 68729bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"(row,col) has no entry in the hash table"); 688187ce0cbSSatish Balay } 689187ce0cbSSatish Balay } 690187ce0cbSSatish Balay } 691187ce0cbSSatish Balay #else 692c2760754SSatish Balay if (HT[idx] != key) { 693c2760754SSatish Balay for (idx=h1; (idx<size) && (HT[idx]!=key); idx++); 694c2760754SSatish Balay if (idx == size) { 695c2760754SSatish Balay for (idx=0; (idx<h1) && (HT[idx]!=key); idx++); 696c2760754SSatish Balay if (idx == h1) { 69729bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"(row,col) has no entry in the hash table"); 698c2760754SSatish Balay } 699c2760754SSatish Balay } 700c2760754SSatish Balay } 701187ce0cbSSatish Balay #endif 702c2760754SSatish Balay baij_a = HD[idx]; 7030bdbc534SSatish Balay if (roworiented) { 704c2760754SSatish Balay /*value = v + i*(stepval+bs)*bs + j*bs;*/ 705187ce0cbSSatish Balay /* value = v + (i*(stepval+bs)+j)*bs; */ 706187ce0cbSSatish Balay value = v_t; 707187ce0cbSSatish Balay v_t += bs; 708fef45726SSatish Balay if (addv == ADD_VALUES) { 709c2760754SSatish Balay for (ii=0; ii<bs; ii++,value+=stepval) { 710c2760754SSatish Balay for (jj=ii; jj<bs2; jj+=bs) { 711fef45726SSatish Balay baij_a[jj] += *value++; 712b4cc0f5aSSatish Balay } 713b4cc0f5aSSatish Balay } 714fef45726SSatish Balay } else { 715c2760754SSatish Balay for (ii=0; ii<bs; ii++,value+=stepval) { 716c2760754SSatish Balay for (jj=ii; jj<bs2; jj+=bs) { 717fef45726SSatish Balay baij_a[jj] = *value++; 718fef45726SSatish Balay } 719fef45726SSatish Balay } 720fef45726SSatish Balay } 7210bdbc534SSatish Balay } else { 7220bdbc534SSatish Balay value = v + j*(stepval+bs)*bs + i*bs; 723fef45726SSatish Balay if (addv == ADD_VALUES) { 724b4cc0f5aSSatish Balay for (ii=0; ii<bs; ii++,value+=stepval,baij_a+=bs) { 7250bdbc534SSatish Balay for (jj=0; jj<bs; jj++) { 726fef45726SSatish Balay baij_a[jj] += *value++; 727fef45726SSatish Balay } 728fef45726SSatish Balay } 729fef45726SSatish Balay } else { 730fef45726SSatish Balay for (ii=0; ii<bs; ii++,value+=stepval,baij_a+=bs) { 731fef45726SSatish Balay for (jj=0; jj<bs; jj++) { 732fef45726SSatish Balay baij_a[jj] = *value++; 733fef45726SSatish Balay } 734b4cc0f5aSSatish Balay } 7350bdbc534SSatish Balay } 7360bdbc534SSatish Balay } 7370bdbc534SSatish Balay } 7380bdbc534SSatish Balay } else { 7390bdbc534SSatish Balay if (!baij->donotstash) { 7400bdbc534SSatish Balay if (roworiented) { 7418798bf22SSatish Balay ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 7420bdbc534SSatish Balay } else { 7438798bf22SSatish Balay ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 7440bdbc534SSatish Balay } 7450bdbc534SSatish Balay } 7460bdbc534SSatish Balay } 7470bdbc534SSatish Balay } 748aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g) 749187ce0cbSSatish Balay baij->ht_total_ct = total_ct; 750187ce0cbSSatish Balay baij->ht_insert_ct = insert_ct; 751187ce0cbSSatish Balay #endif 7520bdbc534SSatish Balay PetscFunctionReturn(0); 7530bdbc534SSatish Balay } 754133cdb44SSatish Balay 7550bdbc534SSatish Balay #undef __FUNC__ 756*b0a32e0cSBarry Smith #define __FUNC__ "MatGetValues_MPIBAIJ" 757ec1ea8d8SLois Curfman McInnes int MatGetValues_MPIBAIJ(Mat mat,int m,int *idxm,int n,int *idxn,Scalar *v) 758d6de1c52SSatish Balay { 759d6de1c52SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 760d6de1c52SSatish Balay int bs=baij->bs,ierr,i,j,bsrstart = baij->rstart*bs,bsrend = baij->rend*bs; 76148e59246SSatish Balay int bscstart = baij->cstart*bs,bscend = baij->cend*bs,row,col,data; 762d6de1c52SSatish Balay 763133cdb44SSatish Balay PetscFunctionBegin; 764d6de1c52SSatish Balay for (i=0; i<m; i++) { 76529bbc08cSBarry Smith if (idxm[i] < 0) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Negative row"); 766273d9f13SBarry Smith if (idxm[i] >= mat->M) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Row too large"); 767d6de1c52SSatish Balay if (idxm[i] >= bsrstart && idxm[i] < bsrend) { 768d6de1c52SSatish Balay row = idxm[i] - bsrstart; 769d6de1c52SSatish Balay for (j=0; j<n; j++) { 77029bbc08cSBarry Smith if (idxn[j] < 0) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Negative column"); 771273d9f13SBarry Smith if (idxn[j] >= mat->N) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Column too large"); 772d6de1c52SSatish Balay if (idxn[j] >= bscstart && idxn[j] < bscend){ 773d6de1c52SSatish Balay col = idxn[j] - bscstart; 77498dd23e9SBarry Smith ierr = MatGetValues_SeqBAIJ(baij->A,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr); 775d64ed03dSBarry Smith } else { 776905e6a2fSBarry Smith if (!baij->colmap) { 777905e6a2fSBarry Smith ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 778905e6a2fSBarry Smith } 779aa482453SBarry Smith #if defined (PETSC_USE_CTABLE) 7800f5bd95cSBarry Smith ierr = PetscTableFind(baij->colmap,idxn[j]/bs+1,&data);CHKERRQ(ierr); 781fa46199cSSatish Balay data --; 78248e59246SSatish Balay #else 78348e59246SSatish Balay data = baij->colmap[idxn[j]/bs]-1; 78448e59246SSatish Balay #endif 78548e59246SSatish Balay if((data < 0) || (baij->garray[data/bs] != idxn[j]/bs)) *(v+i*n+j) = 0.0; 786d9d09a02SSatish Balay else { 78748e59246SSatish Balay col = data + idxn[j]%bs; 78898dd23e9SBarry Smith ierr = MatGetValues_SeqBAIJ(baij->B,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr); 789d6de1c52SSatish Balay } 790d6de1c52SSatish Balay } 791d6de1c52SSatish Balay } 792d64ed03dSBarry Smith } else { 79329bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"Only local values currently supported"); 794d6de1c52SSatish Balay } 795d6de1c52SSatish Balay } 7963a40ed3dSBarry Smith PetscFunctionReturn(0); 797d6de1c52SSatish Balay } 798d6de1c52SSatish Balay 7995615d1e5SSatish Balay #undef __FUNC__ 800*b0a32e0cSBarry Smith #define __FUNC__ "MatNorm_MPIBAIJ" 801329f5518SBarry Smith int MatNorm_MPIBAIJ(Mat mat,NormType type,PetscReal *norm) 802d6de1c52SSatish Balay { 803d6de1c52SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 804d6de1c52SSatish Balay Mat_SeqBAIJ *amat = (Mat_SeqBAIJ*)baij->A->data,*bmat = (Mat_SeqBAIJ*)baij->B->data; 805acdf5bf4SSatish Balay int ierr,i,bs2=baij->bs2; 806329f5518SBarry Smith PetscReal sum = 0.0; 8073eda8832SBarry Smith MatScalar *v; 808d6de1c52SSatish Balay 809d64ed03dSBarry Smith PetscFunctionBegin; 810d6de1c52SSatish Balay if (baij->size == 1) { 811d6de1c52SSatish Balay ierr = MatNorm(baij->A,type,norm);CHKERRQ(ierr); 812d6de1c52SSatish Balay } else { 813d6de1c52SSatish Balay if (type == NORM_FROBENIUS) { 814d6de1c52SSatish Balay v = amat->a; 815d6de1c52SSatish Balay for (i=0; i<amat->nz*bs2; i++) { 816aa482453SBarry Smith #if defined(PETSC_USE_COMPLEX) 817329f5518SBarry Smith sum += PetscRealPart(PetscConj(*v)*(*v)); v++; 818d6de1c52SSatish Balay #else 819d6de1c52SSatish Balay sum += (*v)*(*v); v++; 820d6de1c52SSatish Balay #endif 821d6de1c52SSatish Balay } 822d6de1c52SSatish Balay v = bmat->a; 823d6de1c52SSatish Balay for (i=0; i<bmat->nz*bs2; i++) { 824aa482453SBarry Smith #if defined(PETSC_USE_COMPLEX) 825329f5518SBarry Smith sum += PetscRealPart(PetscConj(*v)*(*v)); v++; 826d6de1c52SSatish Balay #else 827d6de1c52SSatish Balay sum += (*v)*(*v); v++; 828d6de1c52SSatish Balay #endif 829d6de1c52SSatish Balay } 830ca161407SBarry Smith ierr = MPI_Allreduce(&sum,norm,1,MPI_DOUBLE,MPI_SUM,mat->comm);CHKERRQ(ierr); 831d6de1c52SSatish Balay *norm = sqrt(*norm); 832d64ed03dSBarry Smith } else { 83329bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"No support for this norm yet"); 834d6de1c52SSatish Balay } 835d64ed03dSBarry Smith } 8363a40ed3dSBarry Smith PetscFunctionReturn(0); 837d6de1c52SSatish Balay } 83857b952d6SSatish Balay 839bd7f49f5SSatish Balay 840fef45726SSatish Balay /* 841fef45726SSatish Balay Creates the hash table, and sets the table 842fef45726SSatish Balay This table is created only once. 843fef45726SSatish Balay If new entried need to be added to the matrix 844fef45726SSatish Balay then the hash table has to be destroyed and 845fef45726SSatish Balay recreated. 846fef45726SSatish Balay */ 847fef45726SSatish Balay #undef __FUNC__ 848*b0a32e0cSBarry Smith #define __FUNC__ "MatCreateHashTable_MPIBAIJ_Private" 849329f5518SBarry Smith int MatCreateHashTable_MPIBAIJ_Private(Mat mat,PetscReal factor) 850596b8d2eSBarry Smith { 851596b8d2eSBarry Smith Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 852596b8d2eSBarry Smith Mat A = baij->A,B=baij->B; 853596b8d2eSBarry Smith Mat_SeqBAIJ *a=(Mat_SeqBAIJ *)A->data,*b=(Mat_SeqBAIJ *)B->data; 8540bdbc534SSatish Balay int i,j,k,nz=a->nz+b->nz,h1,*ai=a->i,*aj=a->j,*bi=b->i,*bj=b->j; 855549d3d68SSatish Balay int size,bs2=baij->bs2,rstart=baij->rstart,ierr; 856187ce0cbSSatish Balay int cstart=baij->cstart,*garray=baij->garray,row,col,Nbs=baij->Nbs; 857fef45726SSatish Balay int *HT,key; 8583eda8832SBarry Smith MatScalar **HD; 859329f5518SBarry Smith PetscReal tmp; 860aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g) 8614a15367fSSatish Balay int ct=0,max=0; 8624a15367fSSatish Balay #endif 863fef45726SSatish Balay 864d64ed03dSBarry Smith PetscFunctionBegin; 8650bdbc534SSatish Balay baij->ht_size=(int)(factor*nz); 8660bdbc534SSatish Balay size = baij->ht_size; 867fef45726SSatish Balay 8680bdbc534SSatish Balay if (baij->ht) { 8690bdbc534SSatish Balay PetscFunctionReturn(0); 870596b8d2eSBarry Smith } 8710bdbc534SSatish Balay 872fef45726SSatish Balay /* Allocate Memory for Hash Table */ 873*b0a32e0cSBarry Smith ierr = PetscMalloc((size)*(sizeof(int)+sizeof(MatScalar*))+1,& baij->hd );CHKERRQ(ierr); 874b9e4cc15SSatish Balay baij->ht = (int*)(baij->hd + size); 875b9e4cc15SSatish Balay HD = baij->hd; 876a07cd24cSSatish Balay HT = baij->ht; 877b9e4cc15SSatish Balay 878b9e4cc15SSatish Balay 879549d3d68SSatish Balay ierr = PetscMemzero(HD,size*(sizeof(int)+sizeof(Scalar*)));CHKERRQ(ierr); 8800bdbc534SSatish Balay 881596b8d2eSBarry Smith 882596b8d2eSBarry Smith /* Loop Over A */ 8830bdbc534SSatish Balay for (i=0; i<a->mbs; i++) { 884596b8d2eSBarry Smith for (j=ai[i]; j<ai[i+1]; j++) { 8850bdbc534SSatish Balay row = i+rstart; 8860bdbc534SSatish Balay col = aj[j]+cstart; 887596b8d2eSBarry Smith 888187ce0cbSSatish Balay key = row*Nbs + col + 1; 889c2760754SSatish Balay h1 = HASH(size,key,tmp); 8900bdbc534SSatish Balay for (k=0; k<size; k++){ 8910bdbc534SSatish Balay if (HT[(h1+k)%size] == 0.0) { 8920bdbc534SSatish Balay HT[(h1+k)%size] = key; 8930bdbc534SSatish Balay HD[(h1+k)%size] = a->a + j*bs2; 894596b8d2eSBarry Smith break; 895aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g) 896187ce0cbSSatish Balay } else { 897187ce0cbSSatish Balay ct++; 898187ce0cbSSatish Balay #endif 899596b8d2eSBarry Smith } 900187ce0cbSSatish Balay } 901aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g) 902187ce0cbSSatish Balay if (k> max) max = k; 903187ce0cbSSatish Balay #endif 904596b8d2eSBarry Smith } 905596b8d2eSBarry Smith } 906596b8d2eSBarry Smith /* Loop Over B */ 9070bdbc534SSatish Balay for (i=0; i<b->mbs; i++) { 908596b8d2eSBarry Smith for (j=bi[i]; j<bi[i+1]; j++) { 9090bdbc534SSatish Balay row = i+rstart; 9100bdbc534SSatish Balay col = garray[bj[j]]; 911187ce0cbSSatish Balay key = row*Nbs + col + 1; 912c2760754SSatish Balay h1 = HASH(size,key,tmp); 9130bdbc534SSatish Balay for (k=0; k<size; k++){ 9140bdbc534SSatish Balay if (HT[(h1+k)%size] == 0.0) { 9150bdbc534SSatish Balay HT[(h1+k)%size] = key; 9160bdbc534SSatish Balay HD[(h1+k)%size] = b->a + j*bs2; 917596b8d2eSBarry Smith break; 918aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g) 919187ce0cbSSatish Balay } else { 920187ce0cbSSatish Balay ct++; 921187ce0cbSSatish Balay #endif 922596b8d2eSBarry Smith } 923187ce0cbSSatish Balay } 924aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g) 925187ce0cbSSatish Balay if (k> max) max = k; 926187ce0cbSSatish Balay #endif 927596b8d2eSBarry Smith } 928596b8d2eSBarry Smith } 929596b8d2eSBarry Smith 930596b8d2eSBarry Smith /* Print Summary */ 931aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g) 932c38d4ed2SBarry Smith for (i=0,j=0; i<size; i++) { 933596b8d2eSBarry Smith if (HT[i]) {j++;} 934c38d4ed2SBarry Smith } 935*b0a32e0cSBarry Smith PetscLogInfo(0,"MatCreateHashTable_MPIBAIJ_Private: Average Search = %5.2f,max search = %d\n",(j== 0)? 0.0:((PetscReal)(ct+j))/j,max); 936187ce0cbSSatish Balay #endif 9373a40ed3dSBarry Smith PetscFunctionReturn(0); 938596b8d2eSBarry Smith } 93957b952d6SSatish Balay 940bbb85fb3SSatish Balay #undef __FUNC__ 941*b0a32e0cSBarry Smith #define __FUNC__ "MatAssemblyBegin_MPIBAIJ" 942bbb85fb3SSatish Balay int MatAssemblyBegin_MPIBAIJ(Mat mat,MatAssemblyType mode) 943bbb85fb3SSatish Balay { 944bbb85fb3SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 945ff2fd236SBarry Smith int ierr,nstash,reallocs; 946bbb85fb3SSatish Balay InsertMode addv; 947bbb85fb3SSatish Balay 948bbb85fb3SSatish Balay PetscFunctionBegin; 949bbb85fb3SSatish Balay if (baij->donotstash) { 950bbb85fb3SSatish Balay PetscFunctionReturn(0); 951bbb85fb3SSatish Balay } 952bbb85fb3SSatish Balay 953bbb85fb3SSatish Balay /* make sure all processors are either in INSERTMODE or ADDMODE */ 954bbb85fb3SSatish Balay ierr = MPI_Allreduce(&mat->insertmode,&addv,1,MPI_INT,MPI_BOR,mat->comm);CHKERRQ(ierr); 955bbb85fb3SSatish Balay if (addv == (ADD_VALUES|INSERT_VALUES)) { 95629bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Some processors inserted others added"); 957bbb85fb3SSatish Balay } 958bbb85fb3SSatish Balay mat->insertmode = addv; /* in case this processor had no cache */ 959bbb85fb3SSatish Balay 9608798bf22SSatish Balay ierr = MatStashScatterBegin_Private(&mat->stash,baij->rowners_bs);CHKERRQ(ierr); 9618798bf22SSatish Balay ierr = MatStashScatterBegin_Private(&mat->bstash,baij->rowners);CHKERRQ(ierr); 9628798bf22SSatish Balay ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr); 963*b0a32e0cSBarry Smith PetscLogInfo(0,"MatAssemblyBegin_MPIBAIJ:Stash has %d entries,uses %d mallocs.\n",nstash,reallocs); 9648798bf22SSatish Balay ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr); 965*b0a32e0cSBarry Smith PetscLogInfo(0,"MatAssemblyBegin_MPIBAIJ:Block-Stash has %d entries, uses %d mallocs.\n",nstash,reallocs); 966bbb85fb3SSatish Balay PetscFunctionReturn(0); 967bbb85fb3SSatish Balay } 968bbb85fb3SSatish Balay 969bbb85fb3SSatish Balay #undef __FUNC__ 970*b0a32e0cSBarry Smith #define __FUNC__ "MatAssemblyEnd_MPIBAIJ" 971bbb85fb3SSatish Balay int MatAssemblyEnd_MPIBAIJ(Mat mat,MatAssemblyType mode) 972bbb85fb3SSatish Balay { 973bbb85fb3SSatish Balay Mat_MPIBAIJ *baij=(Mat_MPIBAIJ*)mat->data; 974a2d1c673SSatish Balay Mat_SeqBAIJ *a=(Mat_SeqBAIJ*)baij->A->data,*b=(Mat_SeqBAIJ*)baij->B->data; 975a2d1c673SSatish Balay int i,j,rstart,ncols,n,ierr,flg,bs2=baij->bs2; 9767c922b88SBarry Smith int *row,*col,other_disassembled; 9777c922b88SBarry Smith PetscTruth r1,r2,r3; 9783eda8832SBarry Smith MatScalar *val; 979bbb85fb3SSatish Balay InsertMode addv = mat->insertmode; 980bbb85fb3SSatish Balay 981bbb85fb3SSatish Balay PetscFunctionBegin; 982bbb85fb3SSatish Balay if (!baij->donotstash) { 983a2d1c673SSatish Balay while (1) { 9848798bf22SSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 985a2d1c673SSatish Balay if (!flg) break; 986a2d1c673SSatish Balay 987bbb85fb3SSatish Balay for (i=0; i<n;) { 988bbb85fb3SSatish Balay /* Now identify the consecutive vals belonging to the same row */ 989bbb85fb3SSatish Balay for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; } 990bbb85fb3SSatish Balay if (j < n) ncols = j-i; 991bbb85fb3SSatish Balay else ncols = n-i; 992bbb85fb3SSatish Balay /* Now assemble all these values with a single function call */ 99393fea6afSBarry Smith ierr = MatSetValues_MPIBAIJ_MatScalar(mat,1,row+i,ncols,col+i,val+i,addv);CHKERRQ(ierr); 994bbb85fb3SSatish Balay i = j; 995bbb85fb3SSatish Balay } 996bbb85fb3SSatish Balay } 9978798bf22SSatish Balay ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr); 998a2d1c673SSatish Balay /* Now process the block-stash. Since the values are stashed column-oriented, 999a2d1c673SSatish Balay set the roworiented flag to column oriented, and after MatSetValues() 1000a2d1c673SSatish Balay restore the original flags */ 1001a2d1c673SSatish Balay r1 = baij->roworiented; 1002a2d1c673SSatish Balay r2 = a->roworiented; 1003a2d1c673SSatish Balay r3 = b->roworiented; 10047c922b88SBarry Smith baij->roworiented = PETSC_FALSE; 10057c922b88SBarry Smith a->roworiented = PETSC_FALSE; 10067c922b88SBarry Smith b->roworiented = PETSC_FALSE; 1007a2d1c673SSatish Balay while (1) { 10088798bf22SSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->bstash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 1009a2d1c673SSatish Balay if (!flg) break; 1010a2d1c673SSatish Balay 1011a2d1c673SSatish Balay for (i=0; i<n;) { 1012a2d1c673SSatish Balay /* Now identify the consecutive vals belonging to the same row */ 1013a2d1c673SSatish Balay for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; } 1014a2d1c673SSatish Balay if (j < n) ncols = j-i; 1015a2d1c673SSatish Balay else ncols = n-i; 101693fea6afSBarry Smith ierr = MatSetValuesBlocked_MPIBAIJ_MatScalar(mat,1,row+i,ncols,col+i,val+i*bs2,addv);CHKERRQ(ierr); 1017a2d1c673SSatish Balay i = j; 1018a2d1c673SSatish Balay } 1019a2d1c673SSatish Balay } 10208798bf22SSatish Balay ierr = MatStashScatterEnd_Private(&mat->bstash);CHKERRQ(ierr); 1021a2d1c673SSatish Balay baij->roworiented = r1; 1022a2d1c673SSatish Balay a->roworiented = r2; 1023a2d1c673SSatish Balay b->roworiented = r3; 1024bbb85fb3SSatish Balay } 1025bbb85fb3SSatish Balay 1026bbb85fb3SSatish Balay ierr = MatAssemblyBegin(baij->A,mode);CHKERRQ(ierr); 1027bbb85fb3SSatish Balay ierr = MatAssemblyEnd(baij->A,mode);CHKERRQ(ierr); 1028bbb85fb3SSatish Balay 1029bbb85fb3SSatish Balay /* determine if any processor has disassembled, if so we must 1030bbb85fb3SSatish Balay also disassemble ourselfs, in order that we may reassemble. */ 1031bbb85fb3SSatish Balay /* 1032bbb85fb3SSatish Balay if nonzero structure of submatrix B cannot change then we know that 1033bbb85fb3SSatish Balay no processor disassembled thus we can skip this stuff 1034bbb85fb3SSatish Balay */ 1035bbb85fb3SSatish Balay if (!((Mat_SeqBAIJ*)baij->B->data)->nonew) { 1036bbb85fb3SSatish Balay ierr = MPI_Allreduce(&mat->was_assembled,&other_disassembled,1,MPI_INT,MPI_PROD,mat->comm);CHKERRQ(ierr); 1037bbb85fb3SSatish Balay if (mat->was_assembled && !other_disassembled) { 1038bbb85fb3SSatish Balay ierr = DisAssemble_MPIBAIJ(mat);CHKERRQ(ierr); 1039bbb85fb3SSatish Balay } 1040bbb85fb3SSatish Balay } 1041bbb85fb3SSatish Balay 1042bbb85fb3SSatish Balay if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) { 1043bbb85fb3SSatish Balay ierr = MatSetUpMultiply_MPIBAIJ(mat);CHKERRQ(ierr); 1044bbb85fb3SSatish Balay } 1045bbb85fb3SSatish Balay ierr = MatAssemblyBegin(baij->B,mode);CHKERRQ(ierr); 1046bbb85fb3SSatish Balay ierr = MatAssemblyEnd(baij->B,mode);CHKERRQ(ierr); 1047bbb85fb3SSatish Balay 1048aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g) 1049bbb85fb3SSatish Balay if (baij->ht && mode== MAT_FINAL_ASSEMBLY) { 1050*b0a32e0cSBarry Smith PetscLogInfo(0,"MatAssemblyEnd_MPIBAIJ:Average Hash Table Search in MatSetValues = %5.2f\n",((double)baij->ht_total_ct)/baij->ht_insert_ct); 1051bbb85fb3SSatish Balay baij->ht_total_ct = 0; 1052bbb85fb3SSatish Balay baij->ht_insert_ct = 0; 1053bbb85fb3SSatish Balay } 1054bbb85fb3SSatish Balay #endif 1055bbb85fb3SSatish Balay if (baij->ht_flag && !baij->ht && mode == MAT_FINAL_ASSEMBLY) { 1056bbb85fb3SSatish Balay ierr = MatCreateHashTable_MPIBAIJ_Private(mat,baij->ht_fact);CHKERRQ(ierr); 1057bbb85fb3SSatish Balay mat->ops->setvalues = MatSetValues_MPIBAIJ_HT; 1058bbb85fb3SSatish Balay mat->ops->setvaluesblocked = MatSetValuesBlocked_MPIBAIJ_HT; 1059bbb85fb3SSatish Balay } 1060bbb85fb3SSatish Balay 1061606d414cSSatish Balay if (baij->rowvalues) { 1062606d414cSSatish Balay ierr = PetscFree(baij->rowvalues);CHKERRQ(ierr); 1063606d414cSSatish Balay baij->rowvalues = 0; 1064606d414cSSatish Balay } 1065bbb85fb3SSatish Balay PetscFunctionReturn(0); 1066bbb85fb3SSatish Balay } 106757b952d6SSatish Balay 10685615d1e5SSatish Balay #undef __FUNC__ 1069*b0a32e0cSBarry Smith #define __FUNC__ "MatView_MPIBAIJ_ASCIIorDraworSocket" 1070*b0a32e0cSBarry Smith static int MatView_MPIBAIJ_ASCIIorDraworSocket(Mat mat,PetscViewer viewer) 107157b952d6SSatish Balay { 107257b952d6SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 107377ed5343SBarry Smith int ierr,format,bs = baij->bs,size = baij->size,rank = baij->rank; 10746831982aSBarry Smith PetscTruth isascii,isdraw; 1075*b0a32e0cSBarry Smith PetscViewer sviewer; 107657b952d6SSatish Balay 1077d64ed03dSBarry Smith PetscFunctionBegin; 1078*b0a32e0cSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&isascii);CHKERRQ(ierr); 1079*b0a32e0cSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSC_DRAW_VIEWER,&isdraw);CHKERRQ(ierr); 10800f5bd95cSBarry Smith if (isascii) { 1081*b0a32e0cSBarry Smith ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr); 1082*b0a32e0cSBarry Smith if (format == PETSC_VIEWER_FORMAT_ASCII_INFO_LONG) { 10834e220ebcSLois Curfman McInnes MatInfo info; 1084d132466eSBarry Smith ierr = MPI_Comm_rank(mat->comm,&rank);CHKERRQ(ierr); 1085d41123aaSBarry Smith ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr); 1086*b0a32e0cSBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Local rows %d nz %d nz alloced %d bs %d mem %d\n", 1087273d9f13SBarry Smith rank,mat->m,(int)info.nz_used*bs,(int)info.nz_allocated*bs, 10886831982aSBarry Smith baij->bs,(int)info.memory);CHKERRQ(ierr); 1089d132466eSBarry Smith ierr = MatGetInfo(baij->A,MAT_LOCAL,&info);CHKERRQ(ierr); 1090*b0a32e0cSBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] on-diagonal part: nz %d \n",rank,(int)info.nz_used*bs);CHKERRQ(ierr); 1091d132466eSBarry Smith ierr = MatGetInfo(baij->B,MAT_LOCAL,&info);CHKERRQ(ierr); 1092*b0a32e0cSBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] off-diagonal part: nz %d \n",rank,(int)info.nz_used*bs);CHKERRQ(ierr); 1093*b0a32e0cSBarry Smith ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 109457b952d6SSatish Balay ierr = VecScatterView(baij->Mvctx,viewer);CHKERRQ(ierr); 10953a40ed3dSBarry Smith PetscFunctionReturn(0); 1096*b0a32e0cSBarry Smith } else if (format == PETSC_VIEWER_FORMAT_ASCII_INFO) { 1097*b0a32e0cSBarry Smith ierr = PetscViewerASCIIPrintf(viewer," block size is %d\n",bs);CHKERRQ(ierr); 10983a40ed3dSBarry Smith PetscFunctionReturn(0); 109957b952d6SSatish Balay } 110057b952d6SSatish Balay } 110157b952d6SSatish Balay 11020f5bd95cSBarry Smith if (isdraw) { 1103*b0a32e0cSBarry Smith PetscDraw draw; 110457b952d6SSatish Balay PetscTruth isnull; 1105*b0a32e0cSBarry Smith ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr); 1106*b0a32e0cSBarry Smith ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); if (isnull) PetscFunctionReturn(0); 110757b952d6SSatish Balay } 110857b952d6SSatish Balay 110957b952d6SSatish Balay if (size == 1) { 111057b952d6SSatish Balay ierr = MatView(baij->A,viewer);CHKERRQ(ierr); 1111d64ed03dSBarry Smith } else { 111257b952d6SSatish Balay /* assemble the entire matrix onto first processor. */ 111357b952d6SSatish Balay Mat A; 111457b952d6SSatish Balay Mat_SeqBAIJ *Aloc; 1115273d9f13SBarry Smith int M = mat->M,N = mat->N,*ai,*aj,col,i,j,k,*rvals,mbs = baij->mbs; 11163eda8832SBarry Smith MatScalar *a; 111757b952d6SSatish Balay 111857b952d6SSatish Balay if (!rank) { 111955843e3eSBarry Smith ierr = MatCreateMPIBAIJ(mat->comm,baij->bs,M,N,M,N,0,PETSC_NULL,0,PETSC_NULL,&A);CHKERRQ(ierr); 1120d64ed03dSBarry Smith } else { 112155843e3eSBarry Smith ierr = MatCreateMPIBAIJ(mat->comm,baij->bs,0,0,M,N,0,PETSC_NULL,0,PETSC_NULL,&A);CHKERRQ(ierr); 112257b952d6SSatish Balay } 1123*b0a32e0cSBarry Smith PetscLogObjectParent(mat,A); 112457b952d6SSatish Balay 112557b952d6SSatish Balay /* copy over the A part */ 112657b952d6SSatish Balay Aloc = (Mat_SeqBAIJ*)baij->A->data; 112757b952d6SSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 1128*b0a32e0cSBarry Smith ierr = PetscMalloc(bs*sizeof(int),&( rvals ));CHKERRQ(ierr); 112957b952d6SSatish Balay 113057b952d6SSatish Balay for (i=0; i<mbs; i++) { 113157b952d6SSatish Balay rvals[0] = bs*(baij->rstart + i); 113257b952d6SSatish Balay for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; } 113357b952d6SSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 113457b952d6SSatish Balay col = (baij->cstart+aj[j])*bs; 113557b952d6SSatish Balay for (k=0; k<bs; k++) { 113693fea6afSBarry Smith ierr = MatSetValues_MPIBAIJ_MatScalar(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 1137cee3aa6bSSatish Balay col++; a += bs; 113857b952d6SSatish Balay } 113957b952d6SSatish Balay } 114057b952d6SSatish Balay } 114157b952d6SSatish Balay /* copy over the B part */ 114257b952d6SSatish Balay Aloc = (Mat_SeqBAIJ*)baij->B->data; 114357b952d6SSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 114457b952d6SSatish Balay for (i=0; i<mbs; i++) { 114557b952d6SSatish Balay rvals[0] = bs*(baij->rstart + i); 114657b952d6SSatish Balay for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; } 114757b952d6SSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 114857b952d6SSatish Balay col = baij->garray[aj[j]]*bs; 114957b952d6SSatish Balay for (k=0; k<bs; k++) { 115093fea6afSBarry Smith ierr = MatSetValues_MPIBAIJ_MatScalar(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 1151cee3aa6bSSatish Balay col++; a += bs; 115257b952d6SSatish Balay } 115357b952d6SSatish Balay } 115457b952d6SSatish Balay } 1155606d414cSSatish Balay ierr = PetscFree(rvals);CHKERRQ(ierr); 11566d4a8577SBarry Smith ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 11576d4a8577SBarry Smith ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 115855843e3eSBarry Smith /* 115955843e3eSBarry Smith Everyone has to call to draw the matrix since the graphics waits are 1160*b0a32e0cSBarry Smith synchronized across all processors that share the PetscDraw object 116155843e3eSBarry Smith */ 1162*b0a32e0cSBarry Smith ierr = PetscViewerGetSingleton(viewer,&sviewer);CHKERRQ(ierr); 1163f14a1c24SBarry Smith if (!rank) { 11646831982aSBarry Smith ierr = MatView(((Mat_MPIBAIJ*)(A->data))->A,sviewer);CHKERRQ(ierr); 116557b952d6SSatish Balay } 1166*b0a32e0cSBarry Smith ierr = PetscViewerRestoreSingleton(viewer,&sviewer);CHKERRQ(ierr); 116757b952d6SSatish Balay ierr = MatDestroy(A);CHKERRQ(ierr); 116857b952d6SSatish Balay } 11693a40ed3dSBarry Smith PetscFunctionReturn(0); 117057b952d6SSatish Balay } 117157b952d6SSatish Balay 11725615d1e5SSatish Balay #undef __FUNC__ 1173*b0a32e0cSBarry Smith #define __FUNC__ "MatView_MPIBAIJ" 1174*b0a32e0cSBarry Smith int MatView_MPIBAIJ(Mat mat,PetscViewer viewer) 117557b952d6SSatish Balay { 117657b952d6SSatish Balay int ierr; 11776831982aSBarry Smith PetscTruth isascii,isdraw,issocket,isbinary; 117857b952d6SSatish Balay 1179d64ed03dSBarry Smith PetscFunctionBegin; 1180*b0a32e0cSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&isascii);CHKERRQ(ierr); 1181*b0a32e0cSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSC_DRAW_VIEWER,&isdraw);CHKERRQ(ierr); 1182*b0a32e0cSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_SOCKET,&issocket);CHKERRQ(ierr); 1183*b0a32e0cSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSC_BINARY_VIEWER,&isbinary);CHKERRQ(ierr); 11840f5bd95cSBarry Smith if (isascii || isdraw || issocket || isbinary) { 11857b2a1423SBarry Smith ierr = MatView_MPIBAIJ_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr); 11865cd90555SBarry Smith } else { 118729bbc08cSBarry Smith SETERRQ1(1,"Viewer type %s not supported by MPIBAIJ matrices",((PetscObject)viewer)->type_name); 118857b952d6SSatish Balay } 11893a40ed3dSBarry Smith PetscFunctionReturn(0); 119057b952d6SSatish Balay } 119157b952d6SSatish Balay 11925615d1e5SSatish Balay #undef __FUNC__ 1193*b0a32e0cSBarry Smith #define __FUNC__ "MatDestroy_MPIBAIJ" 1194e1311b90SBarry Smith int MatDestroy_MPIBAIJ(Mat mat) 119579bdfe76SSatish Balay { 119679bdfe76SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 119779bdfe76SSatish Balay int ierr; 119879bdfe76SSatish Balay 1199d64ed03dSBarry Smith PetscFunctionBegin; 1200aa482453SBarry Smith #if defined(PETSC_USE_LOG) 1201*b0a32e0cSBarry Smith PetscLogObjectState((PetscObject)mat,"Rows=%d,Cols=%d",mat->M,mat->N); 120279bdfe76SSatish Balay #endif 12038798bf22SSatish Balay ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr); 12048798bf22SSatish Balay ierr = MatStashDestroy_Private(&mat->bstash);CHKERRQ(ierr); 1205606d414cSSatish Balay ierr = PetscFree(baij->rowners);CHKERRQ(ierr); 120679bdfe76SSatish Balay ierr = MatDestroy(baij->A);CHKERRQ(ierr); 120779bdfe76SSatish Balay ierr = MatDestroy(baij->B);CHKERRQ(ierr); 1208aa482453SBarry Smith #if defined (PETSC_USE_CTABLE) 12090f5bd95cSBarry Smith if (baij->colmap) {ierr = PetscTableDelete(baij->colmap);CHKERRQ(ierr);} 121048e59246SSatish Balay #else 1211606d414cSSatish Balay if (baij->colmap) {ierr = PetscFree(baij->colmap);CHKERRQ(ierr);} 121248e59246SSatish Balay #endif 1213606d414cSSatish Balay if (baij->garray) {ierr = PetscFree(baij->garray);CHKERRQ(ierr);} 1214606d414cSSatish Balay if (baij->lvec) {ierr = VecDestroy(baij->lvec);CHKERRQ(ierr);} 1215606d414cSSatish Balay if (baij->Mvctx) {ierr = VecScatterDestroy(baij->Mvctx);CHKERRQ(ierr);} 1216606d414cSSatish Balay if (baij->rowvalues) {ierr = PetscFree(baij->rowvalues);CHKERRQ(ierr);} 1217606d414cSSatish Balay if (baij->barray) {ierr = PetscFree(baij->barray);CHKERRQ(ierr);} 1218606d414cSSatish Balay if (baij->hd) {ierr = PetscFree(baij->hd);CHKERRQ(ierr);} 12196fa18ffdSBarry Smith #if defined(PETSC_USE_MAT_SINGLE) 12206fa18ffdSBarry Smith if (baij->setvaluescopy) {ierr = PetscFree(baij->setvaluescopy);CHKERRQ(ierr);} 12216fa18ffdSBarry Smith #endif 1222606d414cSSatish Balay ierr = PetscFree(baij);CHKERRQ(ierr); 12233a40ed3dSBarry Smith PetscFunctionReturn(0); 122479bdfe76SSatish Balay } 122579bdfe76SSatish Balay 12265615d1e5SSatish Balay #undef __FUNC__ 1227*b0a32e0cSBarry Smith #define __FUNC__ "MatMult_MPIBAIJ" 1228ec1ea8d8SLois Curfman McInnes int MatMult_MPIBAIJ(Mat A,Vec xx,Vec yy) 1229cee3aa6bSSatish Balay { 1230cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 123147b4a8eaSLois Curfman McInnes int ierr,nt; 1232cee3aa6bSSatish Balay 1233d64ed03dSBarry Smith PetscFunctionBegin; 1234e1311b90SBarry Smith ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr); 1235273d9f13SBarry Smith if (nt != A->n) { 123629bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx"); 123747b4a8eaSLois Curfman McInnes } 1238e1311b90SBarry Smith ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr); 1239273d9f13SBarry Smith if (nt != A->m) { 124029bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible parition of A and yy"); 124147b4a8eaSLois Curfman McInnes } 124243a90d84SBarry Smith ierr = VecScatterBegin(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr); 1243f830108cSBarry Smith ierr = (*a->A->ops->mult)(a->A,xx,yy);CHKERRQ(ierr); 124443a90d84SBarry Smith ierr = VecScatterEnd(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr); 1245f830108cSBarry Smith ierr = (*a->B->ops->multadd)(a->B,a->lvec,yy,yy);CHKERRQ(ierr); 124643a90d84SBarry Smith ierr = VecScatterPostRecvs(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr); 12473a40ed3dSBarry Smith PetscFunctionReturn(0); 1248cee3aa6bSSatish Balay } 1249cee3aa6bSSatish Balay 12505615d1e5SSatish Balay #undef __FUNC__ 1251*b0a32e0cSBarry Smith #define __FUNC__ "MatMultAdd_MPIBAIJ" 1252ec1ea8d8SLois Curfman McInnes int MatMultAdd_MPIBAIJ(Mat A,Vec xx,Vec yy,Vec zz) 1253cee3aa6bSSatish Balay { 1254cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1255cee3aa6bSSatish Balay int ierr; 1256d64ed03dSBarry Smith 1257d64ed03dSBarry Smith PetscFunctionBegin; 125843a90d84SBarry Smith ierr = VecScatterBegin(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr); 1259f830108cSBarry Smith ierr = (*a->A->ops->multadd)(a->A,xx,yy,zz);CHKERRQ(ierr); 126043a90d84SBarry Smith ierr = VecScatterEnd(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr); 1261f830108cSBarry Smith ierr = (*a->B->ops->multadd)(a->B,a->lvec,zz,zz);CHKERRQ(ierr); 12623a40ed3dSBarry Smith PetscFunctionReturn(0); 1263cee3aa6bSSatish Balay } 1264cee3aa6bSSatish Balay 12655615d1e5SSatish Balay #undef __FUNC__ 1266*b0a32e0cSBarry Smith #define __FUNC__ "MatMultTranspose_MPIBAIJ" 12677c922b88SBarry Smith int MatMultTranspose_MPIBAIJ(Mat A,Vec xx,Vec yy) 1268cee3aa6bSSatish Balay { 1269cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1270cee3aa6bSSatish Balay int ierr; 1271cee3aa6bSSatish Balay 1272d64ed03dSBarry Smith PetscFunctionBegin; 1273cee3aa6bSSatish Balay /* do nondiagonal part */ 12747c922b88SBarry Smith ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr); 1275cee3aa6bSSatish Balay /* send it on its way */ 1276537820f0SBarry Smith ierr = VecScatterBegin(a->lvec,yy,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr); 1277cee3aa6bSSatish Balay /* do local part */ 12787c922b88SBarry Smith ierr = (*a->A->ops->multtranspose)(a->A,xx,yy);CHKERRQ(ierr); 1279cee3aa6bSSatish Balay /* receive remote parts: note this assumes the values are not actually */ 1280cee3aa6bSSatish Balay /* inserted in yy until the next line, which is true for my implementation*/ 1281cee3aa6bSSatish Balay /* but is not perhaps always true. */ 1282639f9d9dSBarry Smith ierr = VecScatterEnd(a->lvec,yy,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr); 12833a40ed3dSBarry Smith PetscFunctionReturn(0); 1284cee3aa6bSSatish Balay } 1285cee3aa6bSSatish Balay 12865615d1e5SSatish Balay #undef __FUNC__ 1287*b0a32e0cSBarry Smith #define __FUNC__ "MatMultTransposeAdd_MPIBAIJ" 12887c922b88SBarry Smith int MatMultTransposeAdd_MPIBAIJ(Mat A,Vec xx,Vec yy,Vec zz) 1289cee3aa6bSSatish Balay { 1290cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1291cee3aa6bSSatish Balay int ierr; 1292cee3aa6bSSatish Balay 1293d64ed03dSBarry Smith PetscFunctionBegin; 1294cee3aa6bSSatish Balay /* do nondiagonal part */ 12957c922b88SBarry Smith ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr); 1296cee3aa6bSSatish Balay /* send it on its way */ 1297537820f0SBarry Smith ierr = VecScatterBegin(a->lvec,zz,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr); 1298cee3aa6bSSatish Balay /* do local part */ 12997c922b88SBarry Smith ierr = (*a->A->ops->multtransposeadd)(a->A,xx,yy,zz);CHKERRQ(ierr); 1300cee3aa6bSSatish Balay /* receive remote parts: note this assumes the values are not actually */ 1301cee3aa6bSSatish Balay /* inserted in yy until the next line, which is true for my implementation*/ 1302cee3aa6bSSatish Balay /* but is not perhaps always true. */ 1303537820f0SBarry Smith ierr = VecScatterEnd(a->lvec,zz,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr); 13043a40ed3dSBarry Smith PetscFunctionReturn(0); 1305cee3aa6bSSatish Balay } 1306cee3aa6bSSatish Balay 1307cee3aa6bSSatish Balay /* 1308cee3aa6bSSatish Balay This only works correctly for square matrices where the subblock A->A is the 1309cee3aa6bSSatish Balay diagonal block 1310cee3aa6bSSatish Balay */ 13115615d1e5SSatish Balay #undef __FUNC__ 1312*b0a32e0cSBarry Smith #define __FUNC__ "MatGetDiagonal_MPIBAIJ" 1313ec1ea8d8SLois Curfman McInnes int MatGetDiagonal_MPIBAIJ(Mat A,Vec v) 1314cee3aa6bSSatish Balay { 1315cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 13163a40ed3dSBarry Smith int ierr; 1317d64ed03dSBarry Smith 1318d64ed03dSBarry Smith PetscFunctionBegin; 1319273d9f13SBarry Smith if (A->M != A->N) SETERRQ(PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block"); 13203a40ed3dSBarry Smith ierr = MatGetDiagonal(a->A,v);CHKERRQ(ierr); 13213a40ed3dSBarry Smith PetscFunctionReturn(0); 1322cee3aa6bSSatish Balay } 1323cee3aa6bSSatish Balay 13245615d1e5SSatish Balay #undef __FUNC__ 1325*b0a32e0cSBarry Smith #define __FUNC__ "MatScale_MPIBAIJ" 1326ec1ea8d8SLois Curfman McInnes int MatScale_MPIBAIJ(Scalar *aa,Mat A) 1327cee3aa6bSSatish Balay { 1328cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1329cee3aa6bSSatish Balay int ierr; 1330d64ed03dSBarry Smith 1331d64ed03dSBarry Smith PetscFunctionBegin; 1332cee3aa6bSSatish Balay ierr = MatScale(aa,a->A);CHKERRQ(ierr); 1333cee3aa6bSSatish Balay ierr = MatScale(aa,a->B);CHKERRQ(ierr); 13343a40ed3dSBarry Smith PetscFunctionReturn(0); 1335cee3aa6bSSatish Balay } 1336026e39d0SSatish Balay 13375615d1e5SSatish Balay #undef __FUNC__ 1338*b0a32e0cSBarry Smith #define __FUNC__ "MatGetOwnershipRange_MPIBAIJ" 1339ec1ea8d8SLois Curfman McInnes int MatGetOwnershipRange_MPIBAIJ(Mat matin,int *m,int *n) 134057b952d6SSatish Balay { 134157b952d6SSatish Balay Mat_MPIBAIJ *mat = (Mat_MPIBAIJ*)matin->data; 1342d64ed03dSBarry Smith 1343d64ed03dSBarry Smith PetscFunctionBegin; 1344273d9f13SBarry Smith if (m) *m = mat->rstart_bs; 1345273d9f13SBarry Smith if (n) *n = mat->rend_bs; 13463a40ed3dSBarry Smith PetscFunctionReturn(0); 134757b952d6SSatish Balay } 134857b952d6SSatish Balay 13495615d1e5SSatish Balay #undef __FUNC__ 1350*b0a32e0cSBarry Smith #define __FUNC__ "MatGetRow_MPIBAIJ" 1351acdf5bf4SSatish Balay int MatGetRow_MPIBAIJ(Mat matin,int row,int *nz,int **idx,Scalar **v) 1352acdf5bf4SSatish Balay { 1353acdf5bf4SSatish Balay Mat_MPIBAIJ *mat = (Mat_MPIBAIJ*)matin->data; 1354acdf5bf4SSatish Balay Scalar *vworkA,*vworkB,**pvA,**pvB,*v_p; 1355acdf5bf4SSatish Balay int bs = mat->bs,bs2 = mat->bs2,i,ierr,*cworkA,*cworkB,**pcA,**pcB; 1356d9d09a02SSatish Balay int nztot,nzA,nzB,lrow,brstart = mat->rstart*bs,brend = mat->rend*bs; 1357d9d09a02SSatish Balay int *cmap,*idx_p,cstart = mat->cstart; 1358acdf5bf4SSatish Balay 1359d64ed03dSBarry Smith PetscFunctionBegin; 136029bbc08cSBarry Smith if (mat->getrowactive == PETSC_TRUE) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Already active"); 1361acdf5bf4SSatish Balay mat->getrowactive = PETSC_TRUE; 1362acdf5bf4SSatish Balay 1363acdf5bf4SSatish Balay if (!mat->rowvalues && (idx || v)) { 1364acdf5bf4SSatish Balay /* 1365acdf5bf4SSatish Balay allocate enough space to hold information from the longest row. 1366acdf5bf4SSatish Balay */ 1367acdf5bf4SSatish Balay Mat_SeqBAIJ *Aa = (Mat_SeqBAIJ*)mat->A->data,*Ba = (Mat_SeqBAIJ*)mat->B->data; 1368bd16c2feSSatish Balay int max = 1,mbs = mat->mbs,tmp; 1369bd16c2feSSatish Balay for (i=0; i<mbs; i++) { 1370acdf5bf4SSatish Balay tmp = Aa->i[i+1] - Aa->i[i] + Ba->i[i+1] - Ba->i[i]; 1371acdf5bf4SSatish Balay if (max < tmp) { max = tmp; } 1372acdf5bf4SSatish Balay } 1373*b0a32e0cSBarry Smith ierr = PetscMalloc(max*bs2*(sizeof(int)+sizeof(Scalar)),& mat->rowvalues );CHKERRQ(ierr); 1374acdf5bf4SSatish Balay mat->rowindices = (int*)(mat->rowvalues + max*bs2); 1375acdf5bf4SSatish Balay } 1376acdf5bf4SSatish Balay 137729bbc08cSBarry Smith if (row < brstart || row >= brend) SETERRQ(PETSC_ERR_SUP,"Only local rows") 1378d9d09a02SSatish Balay lrow = row - brstart; 1379acdf5bf4SSatish Balay 1380acdf5bf4SSatish Balay pvA = &vworkA; pcA = &cworkA; pvB = &vworkB; pcB = &cworkB; 1381acdf5bf4SSatish Balay if (!v) {pvA = 0; pvB = 0;} 1382acdf5bf4SSatish Balay if (!idx) {pcA = 0; if (!v) pcB = 0;} 1383f830108cSBarry Smith ierr = (*mat->A->ops->getrow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr); 1384f830108cSBarry Smith ierr = (*mat->B->ops->getrow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr); 1385acdf5bf4SSatish Balay nztot = nzA + nzB; 1386acdf5bf4SSatish Balay 1387acdf5bf4SSatish Balay cmap = mat->garray; 1388acdf5bf4SSatish Balay if (v || idx) { 1389acdf5bf4SSatish Balay if (nztot) { 1390acdf5bf4SSatish Balay /* Sort by increasing column numbers, assuming A and B already sorted */ 1391acdf5bf4SSatish Balay int imark = -1; 1392acdf5bf4SSatish Balay if (v) { 1393acdf5bf4SSatish Balay *v = v_p = mat->rowvalues; 1394acdf5bf4SSatish Balay for (i=0; i<nzB; i++) { 1395d9d09a02SSatish Balay if (cmap[cworkB[i]/bs] < cstart) v_p[i] = vworkB[i]; 1396acdf5bf4SSatish Balay else break; 1397acdf5bf4SSatish Balay } 1398acdf5bf4SSatish Balay imark = i; 1399acdf5bf4SSatish Balay for (i=0; i<nzA; i++) v_p[imark+i] = vworkA[i]; 1400acdf5bf4SSatish Balay for (i=imark; i<nzB; i++) v_p[nzA+i] = vworkB[i]; 1401acdf5bf4SSatish Balay } 1402acdf5bf4SSatish Balay if (idx) { 1403acdf5bf4SSatish Balay *idx = idx_p = mat->rowindices; 1404acdf5bf4SSatish Balay if (imark > -1) { 1405acdf5bf4SSatish Balay for (i=0; i<imark; i++) { 1406bd16c2feSSatish Balay idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs; 1407acdf5bf4SSatish Balay } 1408acdf5bf4SSatish Balay } else { 1409acdf5bf4SSatish Balay for (i=0; i<nzB; i++) { 1410d9d09a02SSatish Balay if (cmap[cworkB[i]/bs] < cstart) 1411d9d09a02SSatish Balay idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ; 1412acdf5bf4SSatish Balay else break; 1413acdf5bf4SSatish Balay } 1414acdf5bf4SSatish Balay imark = i; 1415acdf5bf4SSatish Balay } 1416d9d09a02SSatish Balay for (i=0; i<nzA; i++) idx_p[imark+i] = cstart*bs + cworkA[i]; 1417d9d09a02SSatish Balay for (i=imark; i<nzB; i++) idx_p[nzA+i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ; 1418acdf5bf4SSatish Balay } 1419d64ed03dSBarry Smith } else { 1420d212a18eSSatish Balay if (idx) *idx = 0; 1421d212a18eSSatish Balay if (v) *v = 0; 1422d212a18eSSatish Balay } 1423acdf5bf4SSatish Balay } 1424acdf5bf4SSatish Balay *nz = nztot; 1425f830108cSBarry Smith ierr = (*mat->A->ops->restorerow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr); 1426f830108cSBarry Smith ierr = (*mat->B->ops->restorerow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr); 14273a40ed3dSBarry Smith PetscFunctionReturn(0); 1428acdf5bf4SSatish Balay } 1429acdf5bf4SSatish Balay 14305615d1e5SSatish Balay #undef __FUNC__ 1431*b0a32e0cSBarry Smith #define __FUNC__ "MatRestoreRow_MPIBAIJ" 1432acdf5bf4SSatish Balay int MatRestoreRow_MPIBAIJ(Mat mat,int row,int *nz,int **idx,Scalar **v) 1433acdf5bf4SSatish Balay { 1434acdf5bf4SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 1435d64ed03dSBarry Smith 1436d64ed03dSBarry Smith PetscFunctionBegin; 1437acdf5bf4SSatish Balay if (baij->getrowactive == PETSC_FALSE) { 143829bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"MatGetRow not called"); 1439acdf5bf4SSatish Balay } 1440acdf5bf4SSatish Balay baij->getrowactive = PETSC_FALSE; 14413a40ed3dSBarry Smith PetscFunctionReturn(0); 1442acdf5bf4SSatish Balay } 1443acdf5bf4SSatish Balay 14445615d1e5SSatish Balay #undef __FUNC__ 1445*b0a32e0cSBarry Smith #define __FUNC__ "MatGetBlockSize_MPIBAIJ" 1446ec1ea8d8SLois Curfman McInnes int MatGetBlockSize_MPIBAIJ(Mat mat,int *bs) 14475a838052SSatish Balay { 14485a838052SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 1449d64ed03dSBarry Smith 1450d64ed03dSBarry Smith PetscFunctionBegin; 14515a838052SSatish Balay *bs = baij->bs; 14523a40ed3dSBarry Smith PetscFunctionReturn(0); 14535a838052SSatish Balay } 14545a838052SSatish Balay 14555615d1e5SSatish Balay #undef __FUNC__ 1456*b0a32e0cSBarry Smith #define __FUNC__ "MatZeroEntries_MPIBAIJ" 1457ec1ea8d8SLois Curfman McInnes int MatZeroEntries_MPIBAIJ(Mat A) 145858667388SSatish Balay { 145958667388SSatish Balay Mat_MPIBAIJ *l = (Mat_MPIBAIJ*)A->data; 146058667388SSatish Balay int ierr; 1461d64ed03dSBarry Smith 1462d64ed03dSBarry Smith PetscFunctionBegin; 146358667388SSatish Balay ierr = MatZeroEntries(l->A);CHKERRQ(ierr); 146458667388SSatish Balay ierr = MatZeroEntries(l->B);CHKERRQ(ierr); 14653a40ed3dSBarry Smith PetscFunctionReturn(0); 146658667388SSatish Balay } 14670ac07820SSatish Balay 14685615d1e5SSatish Balay #undef __FUNC__ 1469*b0a32e0cSBarry Smith #define __FUNC__ "MatGetInfo_MPIBAIJ" 1470ec1ea8d8SLois Curfman McInnes int MatGetInfo_MPIBAIJ(Mat matin,MatInfoType flag,MatInfo *info) 14710ac07820SSatish Balay { 14724e220ebcSLois Curfman McInnes Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)matin->data; 14734e220ebcSLois Curfman McInnes Mat A = a->A,B = a->B; 14747d57db60SLois Curfman McInnes int ierr; 1475329f5518SBarry Smith PetscReal isend[5],irecv[5]; 14760ac07820SSatish Balay 1477d64ed03dSBarry Smith PetscFunctionBegin; 14784e220ebcSLois Curfman McInnes info->block_size = (double)a->bs; 14794e220ebcSLois Curfman McInnes ierr = MatGetInfo(A,MAT_LOCAL,info);CHKERRQ(ierr); 14800e4b21beSBarry Smith isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded; 1481de87f314SBarry Smith isend[3] = info->memory; isend[4] = info->mallocs; 14824e220ebcSLois Curfman McInnes ierr = MatGetInfo(B,MAT_LOCAL,info);CHKERRQ(ierr); 14830e4b21beSBarry Smith isend[0] += info->nz_used; isend[1] += info->nz_allocated; isend[2] += info->nz_unneeded; 1484de87f314SBarry Smith isend[3] += info->memory; isend[4] += info->mallocs; 14850ac07820SSatish Balay if (flag == MAT_LOCAL) { 14864e220ebcSLois Curfman McInnes info->nz_used = isend[0]; 14874e220ebcSLois Curfman McInnes info->nz_allocated = isend[1]; 14884e220ebcSLois Curfman McInnes info->nz_unneeded = isend[2]; 14894e220ebcSLois Curfman McInnes info->memory = isend[3]; 14904e220ebcSLois Curfman McInnes info->mallocs = isend[4]; 14910ac07820SSatish Balay } else if (flag == MAT_GLOBAL_MAX) { 1492f7cdd7c9SBarry Smith ierr = MPI_Allreduce(isend,irecv,5,MPI_DOUBLE,MPI_MAX,matin->comm);CHKERRQ(ierr); 14934e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 14944e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 14954e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 14964e220ebcSLois Curfman McInnes info->memory = irecv[3]; 14974e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 14980ac07820SSatish Balay } else if (flag == MAT_GLOBAL_SUM) { 1499f7cdd7c9SBarry Smith ierr = MPI_Allreduce(isend,irecv,5,MPI_DOUBLE,MPI_SUM,matin->comm);CHKERRQ(ierr); 15004e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 15014e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 15024e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 15034e220ebcSLois Curfman McInnes info->memory = irecv[3]; 15044e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 1505d41123aaSBarry Smith } else { 150629bbc08cSBarry Smith SETERRQ1(1,"Unknown MatInfoType argument %d",flag); 15070ac07820SSatish Balay } 1508273d9f13SBarry Smith info->rows_global = (double)A->M; 1509273d9f13SBarry Smith info->columns_global = (double)A->N; 1510273d9f13SBarry Smith info->rows_local = (double)A->m; 1511273d9f13SBarry Smith info->columns_local = (double)A->N; 15124e220ebcSLois Curfman McInnes info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */ 15134e220ebcSLois Curfman McInnes info->fill_ratio_needed = 0; 15144e220ebcSLois Curfman McInnes info->factor_mallocs = 0; 15153a40ed3dSBarry Smith PetscFunctionReturn(0); 15160ac07820SSatish Balay } 15170ac07820SSatish Balay 15185615d1e5SSatish Balay #undef __FUNC__ 1519*b0a32e0cSBarry Smith #define __FUNC__ "MatSetOption_MPIBAIJ" 1520ec1ea8d8SLois Curfman McInnes int MatSetOption_MPIBAIJ(Mat A,MatOption op) 152158667388SSatish Balay { 152258667388SSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 152398305bb5SBarry Smith int ierr; 152458667388SSatish Balay 1525d64ed03dSBarry Smith PetscFunctionBegin; 152658667388SSatish Balay if (op == MAT_NO_NEW_NONZERO_LOCATIONS || 152758667388SSatish Balay op == MAT_YES_NEW_NONZERO_LOCATIONS || 15286da5968aSLois Curfman McInnes op == MAT_COLUMNS_UNSORTED || 1529c2653b3dSLois Curfman McInnes op == MAT_COLUMNS_SORTED || 15304787f768SSatish Balay op == MAT_NEW_NONZERO_ALLOCATION_ERR || 15317c922b88SBarry Smith op == MAT_KEEP_ZEROED_ROWS || 15324787f768SSatish Balay op == MAT_NEW_NONZERO_LOCATION_ERR) { 153398305bb5SBarry Smith ierr = MatSetOption(a->A,op);CHKERRQ(ierr); 153498305bb5SBarry Smith ierr = MatSetOption(a->B,op);CHKERRQ(ierr); 1535b1fbbac0SLois Curfman McInnes } else if (op == MAT_ROW_ORIENTED) { 15367c922b88SBarry Smith a->roworiented = PETSC_TRUE; 153798305bb5SBarry Smith ierr = MatSetOption(a->A,op);CHKERRQ(ierr); 153898305bb5SBarry Smith ierr = MatSetOption(a->B,op);CHKERRQ(ierr); 1539b1fbbac0SLois Curfman McInnes } else if (op == MAT_ROWS_SORTED || 15406da5968aSLois Curfman McInnes op == MAT_ROWS_UNSORTED || 154158667388SSatish Balay op == MAT_SYMMETRIC || 154258667388SSatish Balay op == MAT_STRUCTURALLY_SYMMETRIC || 1543b51ba29fSSatish Balay op == MAT_YES_NEW_DIAGONALS || 154498305bb5SBarry Smith op == MAT_USE_HASH_TABLE) { 1545*b0a32e0cSBarry Smith PetscLogInfo(A,"Info:MatSetOption_MPIBAIJ:Option ignored\n"); 154698305bb5SBarry Smith } else if (op == MAT_COLUMN_ORIENTED) { 15477c922b88SBarry Smith a->roworiented = PETSC_FALSE; 154898305bb5SBarry Smith ierr = MatSetOption(a->A,op);CHKERRQ(ierr); 154998305bb5SBarry Smith ierr = MatSetOption(a->B,op);CHKERRQ(ierr); 15502b362799SSatish Balay } else if (op == MAT_IGNORE_OFF_PROC_ENTRIES) { 15517c922b88SBarry Smith a->donotstash = PETSC_TRUE; 1552d64ed03dSBarry Smith } else if (op == MAT_NO_NEW_DIAGONALS) { 155329bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"MAT_NO_NEW_DIAGONALS"); 1554133cdb44SSatish Balay } else if (op == MAT_USE_HASH_TABLE) { 15557c922b88SBarry Smith a->ht_flag = PETSC_TRUE; 1556d64ed03dSBarry Smith } else { 155729bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"unknown option"); 1558d64ed03dSBarry Smith } 15593a40ed3dSBarry Smith PetscFunctionReturn(0); 156058667388SSatish Balay } 156158667388SSatish Balay 15625615d1e5SSatish Balay #undef __FUNC__ 1563*b0a32e0cSBarry Smith #define __FUNC__ "MatTranspose_MPIBAIJ(" 1564ec1ea8d8SLois Curfman McInnes int MatTranspose_MPIBAIJ(Mat A,Mat *matout) 15650ac07820SSatish Balay { 15660ac07820SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)A->data; 15670ac07820SSatish Balay Mat_SeqBAIJ *Aloc; 15680ac07820SSatish Balay Mat B; 1569273d9f13SBarry Smith int ierr,M=A->M,N=A->N,*ai,*aj,i,*rvals,j,k,col; 15700ac07820SSatish Balay int bs=baij->bs,mbs=baij->mbs; 15713eda8832SBarry Smith MatScalar *a; 15720ac07820SSatish Balay 1573d64ed03dSBarry Smith PetscFunctionBegin; 157429bbc08cSBarry Smith if (!matout && M != N) SETERRQ(PETSC_ERR_ARG_SIZ,"Square matrix only for in-place"); 1575273d9f13SBarry Smith ierr = MatCreateMPIBAIJ(A->comm,baij->bs,A->n,A->m,N,M,0,PETSC_NULL,0,PETSC_NULL,&B);CHKERRQ(ierr); 15760ac07820SSatish Balay 15770ac07820SSatish Balay /* copy over the A part */ 15780ac07820SSatish Balay Aloc = (Mat_SeqBAIJ*)baij->A->data; 15790ac07820SSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 1580*b0a32e0cSBarry Smith ierr = PetscMalloc(bs*sizeof(int),&( rvals ));CHKERRQ(ierr); 15810ac07820SSatish Balay 15820ac07820SSatish Balay for (i=0; i<mbs; i++) { 15830ac07820SSatish Balay rvals[0] = bs*(baij->rstart + i); 15840ac07820SSatish Balay for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; } 15850ac07820SSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 15860ac07820SSatish Balay col = (baij->cstart+aj[j])*bs; 15870ac07820SSatish Balay for (k=0; k<bs; k++) { 158893fea6afSBarry Smith ierr = MatSetValues_MPIBAIJ_MatScalar(B,1,&col,bs,rvals,a,INSERT_VALUES);CHKERRQ(ierr); 15890ac07820SSatish Balay col++; a += bs; 15900ac07820SSatish Balay } 15910ac07820SSatish Balay } 15920ac07820SSatish Balay } 15930ac07820SSatish Balay /* copy over the B part */ 15940ac07820SSatish Balay Aloc = (Mat_SeqBAIJ*)baij->B->data; 15950ac07820SSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 15960ac07820SSatish Balay for (i=0; i<mbs; i++) { 15970ac07820SSatish Balay rvals[0] = bs*(baij->rstart + i); 15980ac07820SSatish Balay for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; } 15990ac07820SSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 16000ac07820SSatish Balay col = baij->garray[aj[j]]*bs; 16010ac07820SSatish Balay for (k=0; k<bs; k++) { 160293fea6afSBarry Smith ierr = MatSetValues_MPIBAIJ_MatScalar(B,1,&col,bs,rvals,a,INSERT_VALUES);CHKERRQ(ierr); 16030ac07820SSatish Balay col++; a += bs; 16040ac07820SSatish Balay } 16050ac07820SSatish Balay } 16060ac07820SSatish Balay } 1607606d414cSSatish Balay ierr = PetscFree(rvals);CHKERRQ(ierr); 16080ac07820SSatish Balay ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 16090ac07820SSatish Balay ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 16100ac07820SSatish Balay 16117c922b88SBarry Smith if (matout) { 16120ac07820SSatish Balay *matout = B; 16130ac07820SSatish Balay } else { 1614273d9f13SBarry Smith ierr = MatHeaderCopy(A,B);CHKERRQ(ierr); 16150ac07820SSatish Balay } 16163a40ed3dSBarry Smith PetscFunctionReturn(0); 16170ac07820SSatish Balay } 16180e95ebc0SSatish Balay 16195615d1e5SSatish Balay #undef __FUNC__ 1620*b0a32e0cSBarry Smith #define __FUNC__ "MatDiagonalScale_MPIBAIJ" 162136c4a09eSSatish Balay int MatDiagonalScale_MPIBAIJ(Mat mat,Vec ll,Vec rr) 16220e95ebc0SSatish Balay { 162336c4a09eSSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 162436c4a09eSSatish Balay Mat a = baij->A,b = baij->B; 16250e95ebc0SSatish Balay int ierr,s1,s2,s3; 16260e95ebc0SSatish Balay 1627d64ed03dSBarry Smith PetscFunctionBegin; 162836c4a09eSSatish Balay ierr = MatGetLocalSize(mat,&s2,&s3);CHKERRQ(ierr); 162936c4a09eSSatish Balay if (rr) { 163036c4a09eSSatish Balay ierr = VecGetLocalSize(rr,&s1);CHKERRQ(ierr); 163129bbc08cSBarry Smith if (s1!=s3) SETERRQ(PETSC_ERR_ARG_SIZ,"right vector non-conforming local size"); 163236c4a09eSSatish Balay /* Overlap communication with computation. */ 163336c4a09eSSatish Balay ierr = VecScatterBegin(rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD,baij->Mvctx);CHKERRQ(ierr); 163436c4a09eSSatish Balay } 16350e95ebc0SSatish Balay if (ll) { 16360e95ebc0SSatish Balay ierr = VecGetLocalSize(ll,&s1);CHKERRQ(ierr); 163729bbc08cSBarry Smith if (s1!=s2) SETERRQ(PETSC_ERR_ARG_SIZ,"left vector non-conforming local size"); 1638a21fb8cbSBarry Smith ierr = (*b->ops->diagonalscale)(b,ll,PETSC_NULL);CHKERRQ(ierr); 16390e95ebc0SSatish Balay } 164036c4a09eSSatish Balay /* scale the diagonal block */ 164136c4a09eSSatish Balay ierr = (*a->ops->diagonalscale)(a,ll,rr);CHKERRQ(ierr); 164236c4a09eSSatish Balay 164336c4a09eSSatish Balay if (rr) { 164436c4a09eSSatish Balay /* Do a scatter end and then right scale the off-diagonal block */ 164536c4a09eSSatish Balay ierr = VecScatterEnd(rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD,baij->Mvctx);CHKERRQ(ierr); 1646a21fb8cbSBarry Smith ierr = (*b->ops->diagonalscale)(b,PETSC_NULL,baij->lvec);CHKERRQ(ierr); 164736c4a09eSSatish Balay } 164836c4a09eSSatish Balay 16493a40ed3dSBarry Smith PetscFunctionReturn(0); 16500e95ebc0SSatish Balay } 16510e95ebc0SSatish Balay 16525615d1e5SSatish Balay #undef __FUNC__ 1653*b0a32e0cSBarry Smith #define __FUNC__ "MatZeroRows_MPIBAIJ" 1654ec1ea8d8SLois Curfman McInnes int MatZeroRows_MPIBAIJ(Mat A,IS is,Scalar *diag) 16550ac07820SSatish Balay { 16560ac07820SSatish Balay Mat_MPIBAIJ *l = (Mat_MPIBAIJ*)A->data; 16570ac07820SSatish Balay int i,ierr,N,*rows,*owners = l->rowners,size = l->size; 165835d8aa7fSBarry Smith int *procs,*nprocs,j,idx,nsends,*work,row; 16590ac07820SSatish Balay int nmax,*svalues,*starts,*owner,nrecvs,rank = l->rank; 16600ac07820SSatish Balay int *rvalues,tag = A->tag,count,base,slen,n,*source; 1661a07cd24cSSatish Balay int *lens,imdex,*lrows,*values,bs=l->bs,rstart_bs=l->rstart_bs; 16620ac07820SSatish Balay MPI_Comm comm = A->comm; 16630ac07820SSatish Balay MPI_Request *send_waits,*recv_waits; 16640ac07820SSatish Balay MPI_Status recv_status,*send_status; 16650ac07820SSatish Balay IS istmp; 166635d8aa7fSBarry Smith PetscTruth found; 16670ac07820SSatish Balay 1668d64ed03dSBarry Smith PetscFunctionBegin; 1669f14a1c24SBarry Smith ierr = ISGetLocalSize(is,&N);CHKERRQ(ierr); 16700ac07820SSatish Balay ierr = ISGetIndices(is,&rows);CHKERRQ(ierr); 16710ac07820SSatish Balay 16720ac07820SSatish Balay /* first count number of contributors to each processor */ 1673*b0a32e0cSBarry Smith ierr = PetscMalloc(2*size*sizeof(int),&( nprocs ));CHKERRQ(ierr); 1674549d3d68SSatish Balay ierr = PetscMemzero(nprocs,2*size*sizeof(int));CHKERRQ(ierr); 1675549d3d68SSatish Balay procs = nprocs + size; 1676*b0a32e0cSBarry Smith ierr = PetscMalloc((N+1)*sizeof(int),& owner );CHKERRQ(ierr); /* see note*/ 16770ac07820SSatish Balay for (i=0; i<N; i++) { 16780ac07820SSatish Balay idx = rows[i]; 167935d8aa7fSBarry Smith found = PETSC_FALSE; 16800ac07820SSatish Balay for (j=0; j<size; j++) { 16810ac07820SSatish Balay if (idx >= owners[j]*bs && idx < owners[j+1]*bs) { 168235d8aa7fSBarry Smith nprocs[j]++; procs[j] = 1; owner[i] = j; found = PETSC_TRUE; break; 16830ac07820SSatish Balay } 16840ac07820SSatish Balay } 168529bbc08cSBarry Smith if (!found) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Index out of range"); 16860ac07820SSatish Balay } 16870ac07820SSatish Balay nsends = 0; for (i=0; i<size; i++) { nsends += procs[i];} 16880ac07820SSatish Balay 16890ac07820SSatish Balay /* inform other processors of number of messages and max length*/ 1690*b0a32e0cSBarry Smith ierr = PetscMalloc(2*size*sizeof(int),&( work ));CHKERRQ(ierr); 16916831982aSBarry Smith ierr = MPI_Allreduce(nprocs,work,2*size,MPI_INT,PetscMaxSum_Op,comm);CHKERRQ(ierr); 16920ac07820SSatish Balay nmax = work[rank]; 16936831982aSBarry Smith nrecvs = work[size+rank]; 1694606d414cSSatish Balay ierr = PetscFree(work);CHKERRQ(ierr); 16950ac07820SSatish Balay 16960ac07820SSatish Balay /* post receives: */ 1697*b0a32e0cSBarry Smith ierr = PetscMalloc((nrecvs+1)*(nmax+1)*sizeof(int),& rvalues );CHKERRQ(ierr); 1698*b0a32e0cSBarry Smith ierr = PetscMalloc((nrecvs+1)*sizeof(MPI_Request),& recv_waits );CHKERRQ(ierr); 16990ac07820SSatish Balay for (i=0; i<nrecvs; i++) { 1700ca161407SBarry Smith ierr = MPI_Irecv(rvalues+nmax*i,nmax,MPI_INT,MPI_ANY_SOURCE,tag,comm,recv_waits+i);CHKERRQ(ierr); 17010ac07820SSatish Balay } 17020ac07820SSatish Balay 17030ac07820SSatish Balay /* do sends: 17040ac07820SSatish Balay 1) starts[i] gives the starting index in svalues for stuff going to 17050ac07820SSatish Balay the ith processor 17060ac07820SSatish Balay */ 1707*b0a32e0cSBarry Smith ierr = PetscMalloc((N+1)*sizeof(int),& svalues );CHKERRQ(ierr); 1708*b0a32e0cSBarry Smith ierr = PetscMalloc((nsends+1)*sizeof(MPI_Request),& send_waits );CHKERRQ(ierr); 1709*b0a32e0cSBarry Smith ierr = PetscMalloc((size+1)*sizeof(int),& starts );CHKERRQ(ierr); 17100ac07820SSatish Balay starts[0] = 0; 17110ac07820SSatish Balay for (i=1; i<size; i++) { starts[i] = starts[i-1] + nprocs[i-1];} 17120ac07820SSatish Balay for (i=0; i<N; i++) { 17130ac07820SSatish Balay svalues[starts[owner[i]]++] = rows[i]; 17140ac07820SSatish Balay } 17156831982aSBarry Smith ierr = ISRestoreIndices(is,&rows);CHKERRQ(ierr); 17160ac07820SSatish Balay 17170ac07820SSatish Balay starts[0] = 0; 17180ac07820SSatish Balay for (i=1; i<size+1; i++) { starts[i] = starts[i-1] + nprocs[i-1];} 17190ac07820SSatish Balay count = 0; 17200ac07820SSatish Balay for (i=0; i<size; i++) { 17210ac07820SSatish Balay if (procs[i]) { 1722ca161407SBarry Smith ierr = MPI_Isend(svalues+starts[i],nprocs[i],MPI_INT,i,tag,comm,send_waits+count++);CHKERRQ(ierr); 17230ac07820SSatish Balay } 17240ac07820SSatish Balay } 1725606d414cSSatish Balay ierr = PetscFree(starts);CHKERRQ(ierr); 17260ac07820SSatish Balay 17270ac07820SSatish Balay base = owners[rank]*bs; 17280ac07820SSatish Balay 17290ac07820SSatish Balay /* wait on receives */ 1730*b0a32e0cSBarry Smith ierr = PetscMalloc(2*(nrecvs+1)*sizeof(int),& lens );CHKERRQ(ierr); 17310ac07820SSatish Balay source = lens + nrecvs; 17320ac07820SSatish Balay count = nrecvs; slen = 0; 17330ac07820SSatish Balay while (count) { 1734ca161407SBarry Smith ierr = MPI_Waitany(nrecvs,recv_waits,&imdex,&recv_status);CHKERRQ(ierr); 17350ac07820SSatish Balay /* unpack receives into our local space */ 1736ca161407SBarry Smith ierr = MPI_Get_count(&recv_status,MPI_INT,&n);CHKERRQ(ierr); 17370ac07820SSatish Balay source[imdex] = recv_status.MPI_SOURCE; 17380ac07820SSatish Balay lens[imdex] = n; 17390ac07820SSatish Balay slen += n; 17400ac07820SSatish Balay count--; 17410ac07820SSatish Balay } 1742606d414cSSatish Balay ierr = PetscFree(recv_waits);CHKERRQ(ierr); 17430ac07820SSatish Balay 17440ac07820SSatish Balay /* move the data into the send scatter */ 1745*b0a32e0cSBarry Smith ierr = PetscMalloc((slen+1)*sizeof(int),& lrows );CHKERRQ(ierr); 17460ac07820SSatish Balay count = 0; 17470ac07820SSatish Balay for (i=0; i<nrecvs; i++) { 17480ac07820SSatish Balay values = rvalues + i*nmax; 17490ac07820SSatish Balay for (j=0; j<lens[i]; j++) { 17500ac07820SSatish Balay lrows[count++] = values[j] - base; 17510ac07820SSatish Balay } 17520ac07820SSatish Balay } 1753606d414cSSatish Balay ierr = PetscFree(rvalues);CHKERRQ(ierr); 1754606d414cSSatish Balay ierr = PetscFree(lens);CHKERRQ(ierr); 1755606d414cSSatish Balay ierr = PetscFree(owner);CHKERRQ(ierr); 1756606d414cSSatish Balay ierr = PetscFree(nprocs);CHKERRQ(ierr); 17570ac07820SSatish Balay 17580ac07820SSatish Balay /* actually zap the local rows */ 1759029af93fSBarry Smith ierr = ISCreateGeneral(PETSC_COMM_SELF,slen,lrows,&istmp);CHKERRQ(ierr); 1760*b0a32e0cSBarry Smith PetscLogObjectParent(A,istmp); 1761a07cd24cSSatish Balay 176272dacd9aSBarry Smith /* 176372dacd9aSBarry Smith Zero the required rows. If the "diagonal block" of the matrix 176472dacd9aSBarry Smith is square and the user wishes to set the diagonal we use seperate 176572dacd9aSBarry Smith code so that MatSetValues() is not called for each diagonal allocating 176672dacd9aSBarry Smith new memory, thus calling lots of mallocs and slowing things down. 176772dacd9aSBarry Smith 176872dacd9aSBarry Smith Contributed by: Mathew Knepley 176972dacd9aSBarry Smith */ 17709c957beeSSatish Balay /* must zero l->B before l->A because the (diag) case below may put values into l->B*/ 17716fa18ffdSBarry Smith ierr = MatZeroRows_SeqBAIJ(l->B,istmp,0);CHKERRQ(ierr); 17729c957beeSSatish Balay if (diag && (l->A->M == l->A->N)) { 17736fa18ffdSBarry Smith ierr = MatZeroRows_SeqBAIJ(l->A,istmp,diag);CHKERRQ(ierr); 17749c957beeSSatish Balay } else if (diag) { 17756fa18ffdSBarry Smith ierr = MatZeroRows_SeqBAIJ(l->A,istmp,0);CHKERRQ(ierr); 1776fa46199cSSatish Balay if (((Mat_SeqBAIJ*)l->A->data)->nonew) { 177729bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"MatZeroRows() on rectangular matrices cannot be used with the Mat options \n\ 1778fa46199cSSatish Balay MAT_NO_NEW_NONZERO_LOCATIONS,MAT_NEW_NONZERO_LOCATION_ERR,MAT_NEW_NONZERO_ALLOCATION_ERR"); 17796525c446SSatish Balay } 1780a07cd24cSSatish Balay for (i=0; i<slen; i++) { 1781a07cd24cSSatish Balay row = lrows[i] + rstart_bs; 17823f11ea53SBarry Smith ierr = MatSetValues(A,1,&row,1,&row,diag,INSERT_VALUES);CHKERRQ(ierr); 1783a07cd24cSSatish Balay } 1784a07cd24cSSatish Balay ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 1785a07cd24cSSatish Balay ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 17869c957beeSSatish Balay } else { 17876fa18ffdSBarry Smith ierr = MatZeroRows_SeqBAIJ(l->A,istmp,0);CHKERRQ(ierr); 1788a07cd24cSSatish Balay } 17899c957beeSSatish Balay 17909c957beeSSatish Balay ierr = ISDestroy(istmp);CHKERRQ(ierr); 1791606d414cSSatish Balay ierr = PetscFree(lrows);CHKERRQ(ierr); 1792a07cd24cSSatish Balay 17930ac07820SSatish Balay /* wait on sends */ 17940ac07820SSatish Balay if (nsends) { 1795*b0a32e0cSBarry Smith ierr = PetscMalloc(nsends*sizeof(MPI_Status),&( send_status ));CHKERRQ(ierr); 1796ca161407SBarry Smith ierr = MPI_Waitall(nsends,send_waits,send_status);CHKERRQ(ierr); 1797606d414cSSatish Balay ierr = PetscFree(send_status);CHKERRQ(ierr); 17980ac07820SSatish Balay } 1799606d414cSSatish Balay ierr = PetscFree(send_waits);CHKERRQ(ierr); 1800606d414cSSatish Balay ierr = PetscFree(svalues);CHKERRQ(ierr); 18010ac07820SSatish Balay 18023a40ed3dSBarry Smith PetscFunctionReturn(0); 18030ac07820SSatish Balay } 180472dacd9aSBarry Smith 18055615d1e5SSatish Balay #undef __FUNC__ 1806*b0a32e0cSBarry Smith #define __FUNC__ "MatPrintHelp_MPIBAIJ" 1807ec1ea8d8SLois Curfman McInnes int MatPrintHelp_MPIBAIJ(Mat A) 1808ba4ca20aSSatish Balay { 1809ba4ca20aSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 181025fdafccSSatish Balay MPI_Comm comm = A->comm; 1811133cdb44SSatish Balay static int called = 0; 18123a40ed3dSBarry Smith int ierr; 1813ba4ca20aSSatish Balay 1814d64ed03dSBarry Smith PetscFunctionBegin; 18153a40ed3dSBarry Smith if (!a->rank) { 18163a40ed3dSBarry Smith ierr = MatPrintHelp_SeqBAIJ(a->A);CHKERRQ(ierr); 181725fdafccSSatish Balay } 181825fdafccSSatish Balay if (called) {PetscFunctionReturn(0);} else called = 1; 1819d132466eSBarry Smith ierr = (*PetscHelpPrintf)(comm," Options for MATMPIBAIJ matrix format (the defaults):\n");CHKERRQ(ierr); 1820d132466eSBarry Smith ierr = (*PetscHelpPrintf)(comm," -mat_use_hash_table <factor>: Use hashtable for efficient matrix assembly\n");CHKERRQ(ierr); 18213a40ed3dSBarry Smith PetscFunctionReturn(0); 1822ba4ca20aSSatish Balay } 18230ac07820SSatish Balay 18245615d1e5SSatish Balay #undef __FUNC__ 1825*b0a32e0cSBarry Smith #define __FUNC__ "MatSetUnfactored_MPIBAIJ" 1826ec1ea8d8SLois Curfman McInnes int MatSetUnfactored_MPIBAIJ(Mat A) 1827bb5a7306SBarry Smith { 1828bb5a7306SBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1829bb5a7306SBarry Smith int ierr; 1830d64ed03dSBarry Smith 1831d64ed03dSBarry Smith PetscFunctionBegin; 1832bb5a7306SBarry Smith ierr = MatSetUnfactored(a->A);CHKERRQ(ierr); 18333a40ed3dSBarry Smith PetscFunctionReturn(0); 1834bb5a7306SBarry Smith } 1835bb5a7306SBarry Smith 18362e8a6d31SBarry Smith static int MatDuplicate_MPIBAIJ(Mat,MatDuplicateOption,Mat *); 18370ac07820SSatish Balay 18387fc3c18eSBarry Smith #undef __FUNC__ 1839*b0a32e0cSBarry Smith #define __FUNC__ "MatEqual_MPIBAIJ" 18407fc3c18eSBarry Smith int MatEqual_MPIBAIJ(Mat A,Mat B,PetscTruth *flag) 18417fc3c18eSBarry Smith { 18427fc3c18eSBarry Smith Mat_MPIBAIJ *matB = (Mat_MPIBAIJ*)B->data,*matA = (Mat_MPIBAIJ*)A->data; 18437fc3c18eSBarry Smith Mat a,b,c,d; 18447fc3c18eSBarry Smith PetscTruth flg; 18457fc3c18eSBarry Smith int ierr; 18467fc3c18eSBarry Smith 18477fc3c18eSBarry Smith PetscFunctionBegin; 1848273d9f13SBarry Smith ierr = PetscTypeCompare((PetscObject)B,MATMPIBAIJ,&flg);CHKERRQ(ierr); 1849273d9f13SBarry Smith if (!flg) SETERRQ(PETSC_ERR_ARG_INCOMP,"Matrices must be same type"); 18507fc3c18eSBarry Smith a = matA->A; b = matA->B; 18517fc3c18eSBarry Smith c = matB->A; d = matB->B; 18527fc3c18eSBarry Smith 18537fc3c18eSBarry Smith ierr = MatEqual(a,c,&flg);CHKERRQ(ierr); 18547fc3c18eSBarry Smith if (flg == PETSC_TRUE) { 18557fc3c18eSBarry Smith ierr = MatEqual(b,d,&flg);CHKERRQ(ierr); 18567fc3c18eSBarry Smith } 18577fc3c18eSBarry Smith ierr = MPI_Allreduce(&flg,flag,1,MPI_INT,MPI_LAND,A->comm);CHKERRQ(ierr); 18587fc3c18eSBarry Smith PetscFunctionReturn(0); 18597fc3c18eSBarry Smith } 18607fc3c18eSBarry Smith 1861273d9f13SBarry Smith 1862273d9f13SBarry Smith #undef __FUNC__ 1863*b0a32e0cSBarry Smith #define __FUNC__ "MatSetUpPreallocation_MPIBAIJ" 1864273d9f13SBarry Smith int MatSetUpPreallocation_MPIBAIJ(Mat A) 1865273d9f13SBarry Smith { 1866273d9f13SBarry Smith int ierr; 1867273d9f13SBarry Smith 1868273d9f13SBarry Smith PetscFunctionBegin; 1869273d9f13SBarry Smith ierr = MatMPIBAIJSetPreallocation(A,1,PETSC_DEFAULT,0,PETSC_DEFAULT,0);CHKERRQ(ierr); 1870273d9f13SBarry Smith PetscFunctionReturn(0); 1871273d9f13SBarry Smith } 1872273d9f13SBarry Smith 187379bdfe76SSatish Balay /* -------------------------------------------------------------------*/ 1874cc2dc46cSBarry Smith static struct _MatOps MatOps_Values = { 1875cc2dc46cSBarry Smith MatSetValues_MPIBAIJ, 1876cc2dc46cSBarry Smith MatGetRow_MPIBAIJ, 1877cc2dc46cSBarry Smith MatRestoreRow_MPIBAIJ, 1878cc2dc46cSBarry Smith MatMult_MPIBAIJ, 1879cc2dc46cSBarry Smith MatMultAdd_MPIBAIJ, 18807c922b88SBarry Smith MatMultTranspose_MPIBAIJ, 18817c922b88SBarry Smith MatMultTransposeAdd_MPIBAIJ, 1882cc2dc46cSBarry Smith 0, 1883cc2dc46cSBarry Smith 0, 1884cc2dc46cSBarry Smith 0, 1885cc2dc46cSBarry Smith 0, 1886cc2dc46cSBarry Smith 0, 1887cc2dc46cSBarry Smith 0, 1888cc2dc46cSBarry Smith 0, 1889cc2dc46cSBarry Smith MatTranspose_MPIBAIJ, 1890cc2dc46cSBarry Smith MatGetInfo_MPIBAIJ, 18917fc3c18eSBarry Smith MatEqual_MPIBAIJ, 1892cc2dc46cSBarry Smith MatGetDiagonal_MPIBAIJ, 1893cc2dc46cSBarry Smith MatDiagonalScale_MPIBAIJ, 1894cc2dc46cSBarry Smith MatNorm_MPIBAIJ, 1895cc2dc46cSBarry Smith MatAssemblyBegin_MPIBAIJ, 1896cc2dc46cSBarry Smith MatAssemblyEnd_MPIBAIJ, 1897cc2dc46cSBarry Smith 0, 1898cc2dc46cSBarry Smith MatSetOption_MPIBAIJ, 1899cc2dc46cSBarry Smith MatZeroEntries_MPIBAIJ, 1900cc2dc46cSBarry Smith MatZeroRows_MPIBAIJ, 1901cc2dc46cSBarry Smith 0, 1902cc2dc46cSBarry Smith 0, 1903cc2dc46cSBarry Smith 0, 1904cc2dc46cSBarry Smith 0, 1905273d9f13SBarry Smith MatSetUpPreallocation_MPIBAIJ, 1906273d9f13SBarry Smith 0, 1907cc2dc46cSBarry Smith MatGetOwnershipRange_MPIBAIJ, 1908cc2dc46cSBarry Smith 0, 1909cc2dc46cSBarry Smith 0, 1910cc2dc46cSBarry Smith 0, 1911cc2dc46cSBarry Smith 0, 19122e8a6d31SBarry Smith MatDuplicate_MPIBAIJ, 1913cc2dc46cSBarry Smith 0, 1914cc2dc46cSBarry Smith 0, 1915cc2dc46cSBarry Smith 0, 1916cc2dc46cSBarry Smith 0, 1917cc2dc46cSBarry Smith 0, 1918cc2dc46cSBarry Smith MatGetSubMatrices_MPIBAIJ, 1919cc2dc46cSBarry Smith MatIncreaseOverlap_MPIBAIJ, 1920cc2dc46cSBarry Smith MatGetValues_MPIBAIJ, 1921cc2dc46cSBarry Smith 0, 1922cc2dc46cSBarry Smith MatPrintHelp_MPIBAIJ, 1923cc2dc46cSBarry Smith MatScale_MPIBAIJ, 1924cc2dc46cSBarry Smith 0, 1925cc2dc46cSBarry Smith 0, 1926cc2dc46cSBarry Smith 0, 1927cc2dc46cSBarry Smith MatGetBlockSize_MPIBAIJ, 1928cc2dc46cSBarry Smith 0, 1929cc2dc46cSBarry Smith 0, 1930cc2dc46cSBarry Smith 0, 1931cc2dc46cSBarry Smith 0, 1932cc2dc46cSBarry Smith 0, 1933cc2dc46cSBarry Smith 0, 1934cc2dc46cSBarry Smith MatSetUnfactored_MPIBAIJ, 1935cc2dc46cSBarry Smith 0, 1936cc2dc46cSBarry Smith MatSetValuesBlocked_MPIBAIJ, 1937cc2dc46cSBarry Smith 0, 1938f14a1c24SBarry Smith MatDestroy_MPIBAIJ, 1939f14a1c24SBarry Smith MatView_MPIBAIJ, 19407843d17aSBarry Smith MatGetMaps_Petsc, 19417843d17aSBarry Smith 0, 19427843d17aSBarry Smith 0, 19437843d17aSBarry Smith 0, 19447843d17aSBarry Smith 0, 19457843d17aSBarry Smith 0, 19467843d17aSBarry Smith 0, 19477843d17aSBarry Smith MatGetRowMax_MPIBAIJ}; 194879bdfe76SSatish Balay 19495ef9f2a5SBarry Smith 1950e18c124aSSatish Balay EXTERN_C_BEGIN 19515ef9f2a5SBarry Smith #undef __FUNC__ 1952*b0a32e0cSBarry Smith #define __FUNC__ "MatGetDiagonalBlock_MPIBAIJ" 19535ef9f2a5SBarry Smith int MatGetDiagonalBlock_MPIBAIJ(Mat A,PetscTruth *iscopy,MatReuse reuse,Mat *a) 19545ef9f2a5SBarry Smith { 19555ef9f2a5SBarry Smith PetscFunctionBegin; 19565ef9f2a5SBarry Smith *a = ((Mat_MPIBAIJ *)A->data)->A; 19575ef9f2a5SBarry Smith *iscopy = PETSC_FALSE; 19585ef9f2a5SBarry Smith PetscFunctionReturn(0); 19595ef9f2a5SBarry Smith } 1960e18c124aSSatish Balay EXTERN_C_END 196179bdfe76SSatish Balay 1962273d9f13SBarry Smith EXTERN_C_BEGIN 1963273d9f13SBarry Smith #undef __FUNC__ 1964*b0a32e0cSBarry Smith #define __FUNC__ "MatCreate_MPIBAIJ" 1965273d9f13SBarry Smith int MatCreate_MPIBAIJ(Mat B) 1966273d9f13SBarry Smith { 1967273d9f13SBarry Smith Mat_MPIBAIJ *b; 1968273d9f13SBarry Smith int ierr,size; 1969273d9f13SBarry Smith PetscTruth flg; 1970273d9f13SBarry Smith 1971273d9f13SBarry Smith PetscFunctionBegin; 1972273d9f13SBarry Smith 1973273d9f13SBarry Smith ierr = MPI_Comm_size(B->comm,&size);CHKERRQ(ierr); 1974*b0a32e0cSBarry Smith B->data = (void*)(b = PetscNew(Mat_MPIBAIJ));CHKERRQ(ierr); 1975273d9f13SBarry Smith ierr = PetscMemzero(b,sizeof(Mat_MPIBAIJ));CHKERRQ(ierr); 1976273d9f13SBarry Smith ierr = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr); 1977273d9f13SBarry Smith B->mapping = 0; 1978273d9f13SBarry Smith B->factor = 0; 1979273d9f13SBarry Smith B->assembled = PETSC_FALSE; 1980273d9f13SBarry Smith 1981273d9f13SBarry Smith B->insertmode = NOT_SET_VALUES; 1982273d9f13SBarry Smith ierr = MPI_Comm_rank(B->comm,&b->rank);CHKERRQ(ierr); 1983273d9f13SBarry Smith ierr = MPI_Comm_size(B->comm,&b->size);CHKERRQ(ierr); 1984273d9f13SBarry Smith 1985273d9f13SBarry Smith /* build local table of row and column ownerships */ 1986*b0a32e0cSBarry Smith b->rowners = (int*)PetscMalloc(3*(b->size+2)*sizeof(int));CHKERRQ(ierr); 1987*b0a32e0cSBarry Smith PetscLogObjectMemory(B,3*(b->size+2)*sizeof(int)+sizeof(struct _p_Mat)+sizeof(Mat_MPIBAIJ)); 1988273d9f13SBarry Smith b->cowners = b->rowners + b->size + 2; 1989273d9f13SBarry Smith b->rowners_bs = b->cowners + b->size + 2; 1990273d9f13SBarry Smith 1991273d9f13SBarry Smith /* build cache for off array entries formed */ 1992273d9f13SBarry Smith ierr = MatStashCreate_Private(B->comm,1,&B->stash);CHKERRQ(ierr); 1993273d9f13SBarry Smith b->donotstash = PETSC_FALSE; 1994273d9f13SBarry Smith b->colmap = PETSC_NULL; 1995273d9f13SBarry Smith b->garray = PETSC_NULL; 1996273d9f13SBarry Smith b->roworiented = PETSC_TRUE; 1997273d9f13SBarry Smith 1998273d9f13SBarry Smith #if defined(PEYSC_USE_MAT_SINGLE) 1999273d9f13SBarry Smith /* stuff for MatSetValues_XXX in single precision */ 2000273d9f13SBarry Smith b->lensetvalues = 0; 2001273d9f13SBarry Smith b->setvaluescopy = PETSC_NULL; 2002273d9f13SBarry Smith #endif 2003273d9f13SBarry Smith 2004273d9f13SBarry Smith /* stuff used in block assembly */ 2005273d9f13SBarry Smith b->barray = 0; 2006273d9f13SBarry Smith 2007273d9f13SBarry Smith /* stuff used for matrix vector multiply */ 2008273d9f13SBarry Smith b->lvec = 0; 2009273d9f13SBarry Smith b->Mvctx = 0; 2010273d9f13SBarry Smith 2011273d9f13SBarry Smith /* stuff for MatGetRow() */ 2012273d9f13SBarry Smith b->rowindices = 0; 2013273d9f13SBarry Smith b->rowvalues = 0; 2014273d9f13SBarry Smith b->getrowactive = PETSC_FALSE; 2015273d9f13SBarry Smith 2016273d9f13SBarry Smith /* hash table stuff */ 2017273d9f13SBarry Smith b->ht = 0; 2018273d9f13SBarry Smith b->hd = 0; 2019273d9f13SBarry Smith b->ht_size = 0; 2020273d9f13SBarry Smith b->ht_flag = PETSC_FALSE; 2021273d9f13SBarry Smith b->ht_fact = 0; 2022273d9f13SBarry Smith b->ht_total_ct = 0; 2023273d9f13SBarry Smith b->ht_insert_ct = 0; 2024273d9f13SBarry Smith 2025*b0a32e0cSBarry Smith ierr = PetscOptionsHasName(PETSC_NULL,"-mat_use_hash_table",&flg);CHKERRQ(ierr); 2026273d9f13SBarry Smith if (flg) { 2027273d9f13SBarry Smith double fact = 1.39; 2028273d9f13SBarry Smith ierr = MatSetOption(B,MAT_USE_HASH_TABLE);CHKERRQ(ierr); 2029*b0a32e0cSBarry Smith ierr = PetscOptionsGetDouble(PETSC_NULL,"-mat_use_hash_table",&fact,PETSC_NULL);CHKERRQ(ierr); 2030273d9f13SBarry Smith if (fact <= 1.0) fact = 1.39; 2031273d9f13SBarry Smith ierr = MatMPIBAIJSetHashTableFactor(B,fact);CHKERRQ(ierr); 2032*b0a32e0cSBarry Smith PetscLogInfo(0,"MatCreateMPIBAIJ:Hash table Factor used %5.2f\n",fact); 2033273d9f13SBarry Smith } 2034273d9f13SBarry Smith ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatStoreValues_C", 2035273d9f13SBarry Smith "MatStoreValues_MPIBAIJ", 2036273d9f13SBarry Smith MatStoreValues_MPIBAIJ);CHKERRQ(ierr); 2037273d9f13SBarry Smith ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatRetrieveValues_C", 2038273d9f13SBarry Smith "MatRetrieveValues_MPIBAIJ", 2039273d9f13SBarry Smith MatRetrieveValues_MPIBAIJ);CHKERRQ(ierr); 2040273d9f13SBarry Smith ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetDiagonalBlock_C", 2041273d9f13SBarry Smith "MatGetDiagonalBlock_MPIBAIJ", 2042273d9f13SBarry Smith MatGetDiagonalBlock_MPIBAIJ);CHKERRQ(ierr); 2043273d9f13SBarry Smith PetscFunctionReturn(0); 2044273d9f13SBarry Smith } 2045273d9f13SBarry Smith EXTERN_C_END 2046273d9f13SBarry Smith 2047273d9f13SBarry Smith #undef __FUNC__ 2048*b0a32e0cSBarry Smith #define __FUNC__ "MatMPIBAIJSetPreallocation" 2049273d9f13SBarry Smith /*@C 2050273d9f13SBarry Smith MatMPIBAIJSetPreallocation - Creates a sparse parallel matrix in block AIJ format 2051273d9f13SBarry Smith (block compressed row). For good matrix assembly performance 2052273d9f13SBarry Smith the user should preallocate the matrix storage by setting the parameters 2053273d9f13SBarry Smith d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 2054273d9f13SBarry Smith performance can be increased by more than a factor of 50. 2055273d9f13SBarry Smith 2056273d9f13SBarry Smith Collective on Mat 2057273d9f13SBarry Smith 2058273d9f13SBarry Smith Input Parameters: 2059273d9f13SBarry Smith + A - the matrix 2060273d9f13SBarry Smith . bs - size of blockk 2061273d9f13SBarry Smith . d_nz - number of block nonzeros per block row in diagonal portion of local 2062273d9f13SBarry Smith submatrix (same for all local rows) 2063273d9f13SBarry Smith . d_nnz - array containing the number of block nonzeros in the various block rows 2064273d9f13SBarry Smith of the in diagonal portion of the local (possibly different for each block 2065273d9f13SBarry Smith row) or PETSC_NULL. You must leave room for the diagonal entry even if it is zero. 2066273d9f13SBarry Smith . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 2067273d9f13SBarry Smith submatrix (same for all local rows). 2068273d9f13SBarry Smith - o_nnz - array containing the number of nonzeros in the various block rows of the 2069273d9f13SBarry Smith off-diagonal portion of the local submatrix (possibly different for 2070273d9f13SBarry Smith each block row) or PETSC_NULL. 2071273d9f13SBarry Smith 2072273d9f13SBarry Smith Output Parameter: 2073273d9f13SBarry Smith 2074273d9f13SBarry Smith 2075273d9f13SBarry Smith Options Database Keys: 2076273d9f13SBarry Smith . -mat_no_unroll - uses code that does not unroll the loops in the 2077273d9f13SBarry Smith block calculations (much slower) 2078273d9f13SBarry Smith . -mat_block_size - size of the blocks to use 2079273d9f13SBarry Smith 2080273d9f13SBarry Smith Notes: 2081273d9f13SBarry Smith If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one processor 2082273d9f13SBarry Smith than it must be used on all processors that share the object for that argument. 2083273d9f13SBarry Smith 2084273d9f13SBarry Smith Storage Information: 2085273d9f13SBarry Smith For a square global matrix we define each processor's diagonal portion 2086273d9f13SBarry Smith to be its local rows and the corresponding columns (a square submatrix); 2087273d9f13SBarry Smith each processor's off-diagonal portion encompasses the remainder of the 2088273d9f13SBarry Smith local matrix (a rectangular submatrix). 2089273d9f13SBarry Smith 2090273d9f13SBarry Smith The user can specify preallocated storage for the diagonal part of 2091273d9f13SBarry Smith the local submatrix with either d_nz or d_nnz (not both). Set 2092273d9f13SBarry Smith d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic 2093273d9f13SBarry Smith memory allocation. Likewise, specify preallocated storage for the 2094273d9f13SBarry Smith off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 2095273d9f13SBarry Smith 2096273d9f13SBarry Smith Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 2097273d9f13SBarry Smith the figure below we depict these three local rows and all columns (0-11). 2098273d9f13SBarry Smith 2099273d9f13SBarry Smith .vb 2100273d9f13SBarry Smith 0 1 2 3 4 5 6 7 8 9 10 11 2101273d9f13SBarry Smith ------------------- 2102273d9f13SBarry Smith row 3 | o o o d d d o o o o o o 2103273d9f13SBarry Smith row 4 | o o o d d d o o o o o o 2104273d9f13SBarry Smith row 5 | o o o d d d o o o o o o 2105273d9f13SBarry Smith ------------------- 2106273d9f13SBarry Smith .ve 2107273d9f13SBarry Smith 2108273d9f13SBarry Smith Thus, any entries in the d locations are stored in the d (diagonal) 2109273d9f13SBarry Smith submatrix, and any entries in the o locations are stored in the 2110273d9f13SBarry Smith o (off-diagonal) submatrix. Note that the d and the o submatrices are 2111273d9f13SBarry Smith stored simply in the MATSEQBAIJ format for compressed row storage. 2112273d9f13SBarry Smith 2113273d9f13SBarry Smith Now d_nz should indicate the number of block nonzeros per row in the d matrix, 2114273d9f13SBarry Smith and o_nz should indicate the number of block nonzeros per row in the o matrix. 2115273d9f13SBarry Smith In general, for PDE problems in which most nonzeros are near the diagonal, 2116273d9f13SBarry Smith one expects d_nz >> o_nz. For large problems you MUST preallocate memory 2117273d9f13SBarry Smith or you will get TERRIBLE performance; see the users' manual chapter on 2118273d9f13SBarry Smith matrices. 2119273d9f13SBarry Smith 2120273d9f13SBarry Smith Level: intermediate 2121273d9f13SBarry Smith 2122273d9f13SBarry Smith .keywords: matrix, block, aij, compressed row, sparse, parallel 2123273d9f13SBarry Smith 2124273d9f13SBarry Smith .seealso: MatCreate(), MatCreateSeqBAIJ(), MatSetValues(), MatCreateMPIBAIJ() 2125273d9f13SBarry Smith @*/ 2126273d9f13SBarry Smith int MatMPIBAIJSetPreallocation(Mat B,int bs,int d_nz,int *d_nnz,int o_nz,int *o_nnz) 2127273d9f13SBarry Smith { 2128273d9f13SBarry Smith Mat_MPIBAIJ *b; 2129273d9f13SBarry Smith int ierr,i; 2130273d9f13SBarry Smith PetscTruth flg2; 2131273d9f13SBarry Smith 2132273d9f13SBarry Smith PetscFunctionBegin; 2133273d9f13SBarry Smith ierr = PetscTypeCompare((PetscObject)B,MATMPIBAIJ,&flg2);CHKERRQ(ierr); 2134273d9f13SBarry Smith if (!flg2) PetscFunctionReturn(0); 213547a75d0bSBarry Smith 2136273d9f13SBarry Smith B->preallocated = PETSC_TRUE; 2137*b0a32e0cSBarry Smith ierr = PetscOptionsGetInt(PETSC_NULL,"-mat_block_size",&bs,PETSC_NULL);CHKERRQ(ierr); 2138273d9f13SBarry Smith 2139273d9f13SBarry Smith if (bs < 1) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Invalid block size specified, must be positive"); 2140273d9f13SBarry Smith if (d_nz < -2) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"d_nz cannot be less than -1: value %d",d_nz); 2141273d9f13SBarry Smith if (o_nz < -2) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"o_nz cannot be less than -1: value %d",o_nz); 2142273d9f13SBarry Smith if (d_nnz) { 2143273d9f13SBarry Smith for (i=0; i<B->m/bs; i++) { 2144273d9f13SBarry Smith if (d_nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"d_nnz cannot be less than -1: local row %d value %d",i,d_nnz[i]); 2145273d9f13SBarry Smith } 2146273d9f13SBarry Smith } 2147273d9f13SBarry Smith if (o_nnz) { 2148273d9f13SBarry Smith for (i=0; i<B->m/bs; i++) { 2149273d9f13SBarry Smith if (o_nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"o_nnz cannot be less than -1: local row %d value %d",i,o_nnz[i]); 2150273d9f13SBarry Smith } 2151273d9f13SBarry Smith } 2152273d9f13SBarry Smith 215347a75d0bSBarry Smith ierr = PetscSplitOwnershipBlock(B->comm,bs,&B->m,&B->M);CHKERRQ(ierr); 215447a75d0bSBarry Smith ierr = PetscSplitOwnershipBlock(B->comm,bs,&B->n,&B->N);CHKERRQ(ierr); 215547a75d0bSBarry Smith ierr = MapCreateMPI(B->comm,B->m,B->M,&B->rmap);CHKERRQ(ierr); 215647a75d0bSBarry Smith ierr = MapCreateMPI(B->comm,B->n,B->N,&B->cmap);CHKERRQ(ierr); 215747a75d0bSBarry Smith 2158273d9f13SBarry Smith b = (Mat_MPIBAIJ*)B->data; 2159273d9f13SBarry Smith b->bs = bs; 2160273d9f13SBarry Smith b->bs2 = bs*bs; 2161273d9f13SBarry Smith b->mbs = B->m/bs; 2162273d9f13SBarry Smith b->nbs = B->n/bs; 2163273d9f13SBarry Smith b->Mbs = B->M/bs; 2164273d9f13SBarry Smith b->Nbs = B->N/bs; 2165273d9f13SBarry Smith 2166273d9f13SBarry Smith ierr = MPI_Allgather(&b->mbs,1,MPI_INT,b->rowners+1,1,MPI_INT,B->comm);CHKERRQ(ierr); 2167273d9f13SBarry Smith b->rowners[0] = 0; 2168273d9f13SBarry Smith for (i=2; i<=b->size; i++) { 2169273d9f13SBarry Smith b->rowners[i] += b->rowners[i-1]; 2170273d9f13SBarry Smith } 2171273d9f13SBarry Smith b->rstart = b->rowners[b->rank]; 2172273d9f13SBarry Smith b->rend = b->rowners[b->rank+1]; 2173273d9f13SBarry Smith 2174273d9f13SBarry Smith ierr = MPI_Allgather(&b->nbs,1,MPI_INT,b->cowners+1,1,MPI_INT,B->comm);CHKERRQ(ierr); 2175273d9f13SBarry Smith b->cowners[0] = 0; 2176273d9f13SBarry Smith for (i=2; i<=b->size; i++) { 2177273d9f13SBarry Smith b->cowners[i] += b->cowners[i-1]; 2178273d9f13SBarry Smith } 2179273d9f13SBarry Smith b->cstart = b->cowners[b->rank]; 2180273d9f13SBarry Smith b->cend = b->cowners[b->rank+1]; 2181273d9f13SBarry Smith 2182273d9f13SBarry Smith for (i=0; i<=b->size; i++) { 2183273d9f13SBarry Smith b->rowners_bs[i] = b->rowners[i]*bs; 2184273d9f13SBarry Smith } 2185273d9f13SBarry Smith b->rstart_bs = b->rstart*bs; 2186273d9f13SBarry Smith b->rend_bs = b->rend*bs; 2187273d9f13SBarry Smith b->cstart_bs = b->cstart*bs; 2188273d9f13SBarry Smith b->cend_bs = b->cend*bs; 2189273d9f13SBarry Smith 2190273d9f13SBarry Smith if (d_nz == PETSC_DEFAULT) d_nz = 5; 2191273d9f13SBarry Smith ierr = MatCreateSeqBAIJ(PETSC_COMM_SELF,bs,B->m,B->n,d_nz,d_nnz,&b->A);CHKERRQ(ierr); 2192*b0a32e0cSBarry Smith PetscLogObjectParent(B,b->A); 2193273d9f13SBarry Smith if (o_nz == PETSC_DEFAULT) o_nz = 0; 2194273d9f13SBarry Smith ierr = MatCreateSeqBAIJ(PETSC_COMM_SELF,bs,B->m,B->N,o_nz,o_nnz,&b->B);CHKERRQ(ierr); 2195*b0a32e0cSBarry Smith PetscLogObjectParent(B,b->B); 2196273d9f13SBarry Smith ierr = MatStashCreate_Private(B->comm,bs,&B->bstash);CHKERRQ(ierr); 2197273d9f13SBarry Smith 2198273d9f13SBarry Smith PetscFunctionReturn(0); 2199273d9f13SBarry Smith } 2200273d9f13SBarry Smith 22015615d1e5SSatish Balay #undef __FUNC__ 2202*b0a32e0cSBarry Smith #define __FUNC__ "MatCreateMPIBAIJ" 220379bdfe76SSatish Balay /*@C 220479bdfe76SSatish Balay MatCreateMPIBAIJ - Creates a sparse parallel matrix in block AIJ format 220579bdfe76SSatish Balay (block compressed row). For good matrix assembly performance 220679bdfe76SSatish Balay the user should preallocate the matrix storage by setting the parameters 220779bdfe76SSatish Balay d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 220879bdfe76SSatish Balay performance can be increased by more than a factor of 50. 220979bdfe76SSatish Balay 2210db81eaa0SLois Curfman McInnes Collective on MPI_Comm 2211db81eaa0SLois Curfman McInnes 221279bdfe76SSatish Balay Input Parameters: 2213db81eaa0SLois Curfman McInnes + comm - MPI communicator 221479bdfe76SSatish Balay . bs - size of blockk 221579bdfe76SSatish Balay . m - number of local rows (or PETSC_DECIDE to have calculated if M is given) 221692e8d321SLois Curfman McInnes This value should be the same as the local size used in creating the 221792e8d321SLois Curfman McInnes y vector for the matrix-vector product y = Ax. 221892e8d321SLois Curfman McInnes . n - number of local columns (or PETSC_DECIDE to have calculated if N is given) 221992e8d321SLois Curfman McInnes This value should be the same as the local size used in creating the 222092e8d321SLois Curfman McInnes x vector for the matrix-vector product y = Ax. 2221be79a94dSBarry Smith . M - number of global rows (or PETSC_DETERMINE to have calculated if m is given) 2222be79a94dSBarry Smith . N - number of global columns (or PETSC_DETERMINE to have calculated if n is given) 222347a75d0bSBarry Smith . d_nz - number of nonzero blocks per block row in diagonal portion of local 222479bdfe76SSatish Balay submatrix (same for all local rows) 222547a75d0bSBarry Smith . d_nnz - array containing the number of nonzero blocks in the various block rows 222692e8d321SLois Curfman McInnes of the in diagonal portion of the local (possibly different for each block 2227db81eaa0SLois Curfman McInnes row) or PETSC_NULL. You must leave room for the diagonal entry even if it is zero. 222847a75d0bSBarry Smith . o_nz - number of nonzero blocks per block row in the off-diagonal portion of local 222979bdfe76SSatish Balay submatrix (same for all local rows). 223047a75d0bSBarry Smith - o_nnz - array containing the number of nonzero blocks in the various block rows of the 223192e8d321SLois Curfman McInnes off-diagonal portion of the local submatrix (possibly different for 223292e8d321SLois Curfman McInnes each block row) or PETSC_NULL. 223379bdfe76SSatish Balay 223479bdfe76SSatish Balay Output Parameter: 223579bdfe76SSatish Balay . A - the matrix 223679bdfe76SSatish Balay 2237db81eaa0SLois Curfman McInnes Options Database Keys: 2238db81eaa0SLois Curfman McInnes . -mat_no_unroll - uses code that does not unroll the loops in the 2239db81eaa0SLois Curfman McInnes block calculations (much slower) 2240db81eaa0SLois Curfman McInnes . -mat_block_size - size of the blocks to use 22413ffaccefSLois Curfman McInnes 2242b259b22eSLois Curfman McInnes Notes: 224347a75d0bSBarry Smith A nonzero block is any block that as 1 or more nonzeros in it 224447a75d0bSBarry Smith 224579bdfe76SSatish Balay The user MUST specify either the local or global matrix dimensions 224679bdfe76SSatish Balay (possibly both). 224779bdfe76SSatish Balay 2248be79a94dSBarry Smith If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one processor 2249be79a94dSBarry Smith than it must be used on all processors that share the object for that argument. 2250be79a94dSBarry Smith 225179bdfe76SSatish Balay Storage Information: 225279bdfe76SSatish Balay For a square global matrix we define each processor's diagonal portion 225379bdfe76SSatish Balay to be its local rows and the corresponding columns (a square submatrix); 225479bdfe76SSatish Balay each processor's off-diagonal portion encompasses the remainder of the 225579bdfe76SSatish Balay local matrix (a rectangular submatrix). 225679bdfe76SSatish Balay 225779bdfe76SSatish Balay The user can specify preallocated storage for the diagonal part of 225879bdfe76SSatish Balay the local submatrix with either d_nz or d_nnz (not both). Set 225979bdfe76SSatish Balay d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic 226079bdfe76SSatish Balay memory allocation. Likewise, specify preallocated storage for the 226179bdfe76SSatish Balay off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 226279bdfe76SSatish Balay 226379bdfe76SSatish Balay Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 226479bdfe76SSatish Balay the figure below we depict these three local rows and all columns (0-11). 226579bdfe76SSatish Balay 2266db81eaa0SLois Curfman McInnes .vb 2267db81eaa0SLois Curfman McInnes 0 1 2 3 4 5 6 7 8 9 10 11 2268db81eaa0SLois Curfman McInnes ------------------- 2269db81eaa0SLois Curfman McInnes row 3 | o o o d d d o o o o o o 2270db81eaa0SLois Curfman McInnes row 4 | o o o d d d o o o o o o 2271db81eaa0SLois Curfman McInnes row 5 | o o o d d d o o o o o o 2272db81eaa0SLois Curfman McInnes ------------------- 2273db81eaa0SLois Curfman McInnes .ve 227479bdfe76SSatish Balay 227579bdfe76SSatish Balay Thus, any entries in the d locations are stored in the d (diagonal) 227679bdfe76SSatish Balay submatrix, and any entries in the o locations are stored in the 227779bdfe76SSatish Balay o (off-diagonal) submatrix. Note that the d and the o submatrices are 227857b952d6SSatish Balay stored simply in the MATSEQBAIJ format for compressed row storage. 227979bdfe76SSatish Balay 2280d64ed03dSBarry Smith Now d_nz should indicate the number of block nonzeros per row in the d matrix, 2281d64ed03dSBarry Smith and o_nz should indicate the number of block nonzeros per row in the o matrix. 228279bdfe76SSatish Balay In general, for PDE problems in which most nonzeros are near the diagonal, 228392e8d321SLois Curfman McInnes one expects d_nz >> o_nz. For large problems you MUST preallocate memory 228492e8d321SLois Curfman McInnes or you will get TERRIBLE performance; see the users' manual chapter on 22856da5968aSLois Curfman McInnes matrices. 228679bdfe76SSatish Balay 2287027ccd11SLois Curfman McInnes Level: intermediate 2288027ccd11SLois Curfman McInnes 228992e8d321SLois Curfman McInnes .keywords: matrix, block, aij, compressed row, sparse, parallel 229079bdfe76SSatish Balay 22913eda8832SBarry Smith .seealso: MatCreate(), MatCreateSeqBAIJ(), MatSetValues(), MatCreateMPIBAIJ() 229279bdfe76SSatish Balay @*/ 2293329f5518SBarry Smith int MatCreateMPIBAIJ(MPI_Comm comm,int bs,int m,int n,int M,int N,int d_nz,int *d_nnz,int o_nz,int *o_nnz,Mat *A) 229479bdfe76SSatish Balay { 2295273d9f13SBarry Smith int ierr,size; 229679bdfe76SSatish Balay 2297d64ed03dSBarry Smith PetscFunctionBegin; 2298273d9f13SBarry Smith ierr = MatCreate(comm,m,n,M,N,A);CHKERRQ(ierr); 2299d132466eSBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 2300273d9f13SBarry Smith if (size > 1) { 2301273d9f13SBarry Smith ierr = MatSetType(*A,MATMPIBAIJ);CHKERRQ(ierr); 2302273d9f13SBarry Smith ierr = MatMPIBAIJSetPreallocation(*A,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr); 2303273d9f13SBarry Smith } else { 2304273d9f13SBarry Smith ierr = MatSetType(*A,MATSEQBAIJ);CHKERRQ(ierr); 2305273d9f13SBarry Smith ierr = MatSeqBAIJSetPreallocation(*A,bs,d_nz,d_nnz);CHKERRQ(ierr); 23063914022bSBarry Smith } 23073a40ed3dSBarry Smith PetscFunctionReturn(0); 230879bdfe76SSatish Balay } 2309026e39d0SSatish Balay 23105615d1e5SSatish Balay #undef __FUNC__ 2311*b0a32e0cSBarry Smith #define __FUNC__ "MatDuplicate_MPIBAIJ" 23122e8a6d31SBarry Smith static int MatDuplicate_MPIBAIJ(Mat matin,MatDuplicateOption cpvalues,Mat *newmat) 23130ac07820SSatish Balay { 23140ac07820SSatish Balay Mat mat; 23150ac07820SSatish Balay Mat_MPIBAIJ *a,*oldmat = (Mat_MPIBAIJ*)matin->data; 2316f1af5d2fSBarry Smith int ierr,len=0; 23170ac07820SSatish Balay 2318d64ed03dSBarry Smith PetscFunctionBegin; 23190ac07820SSatish Balay *newmat = 0; 2320273d9f13SBarry Smith ierr = MatCreate(matin->comm,matin->m,matin->n,matin->M,matin->N,&mat);CHKERRQ(ierr); 2321273d9f13SBarry Smith ierr = MatSetType(mat,MATMPIBAIJ);CHKERRQ(ierr); 2322273d9f13SBarry Smith mat->preallocated = PETSC_TRUE; 23230ac07820SSatish Balay mat->assembled = PETSC_TRUE; 2324273d9f13SBarry Smith a = (Mat_MPIBAIJ*)mat->data; 23250ac07820SSatish Balay a->bs = oldmat->bs; 23260ac07820SSatish Balay a->bs2 = oldmat->bs2; 23270ac07820SSatish Balay a->mbs = oldmat->mbs; 23280ac07820SSatish Balay a->nbs = oldmat->nbs; 23290ac07820SSatish Balay a->Mbs = oldmat->Mbs; 23300ac07820SSatish Balay a->Nbs = oldmat->Nbs; 23310ac07820SSatish Balay 23320ac07820SSatish Balay a->rstart = oldmat->rstart; 23330ac07820SSatish Balay a->rend = oldmat->rend; 23340ac07820SSatish Balay a->cstart = oldmat->cstart; 23350ac07820SSatish Balay a->cend = oldmat->cend; 23360ac07820SSatish Balay a->size = oldmat->size; 23370ac07820SSatish Balay a->rank = oldmat->rank; 2338aef5e8e0SSatish Balay a->donotstash = oldmat->donotstash; 2339aef5e8e0SSatish Balay a->roworiented = oldmat->roworiented; 2340aef5e8e0SSatish Balay a->rowindices = 0; 23410ac07820SSatish Balay a->rowvalues = 0; 23420ac07820SSatish Balay a->getrowactive = PETSC_FALSE; 234330793edcSSatish Balay a->barray = 0; 23443123a43fSSatish Balay a->rstart_bs = oldmat->rstart_bs; 23453123a43fSSatish Balay a->rend_bs = oldmat->rend_bs; 23463123a43fSSatish Balay a->cstart_bs = oldmat->cstart_bs; 23473123a43fSSatish Balay a->cend_bs = oldmat->cend_bs; 23480ac07820SSatish Balay 2349133cdb44SSatish Balay /* hash table stuff */ 2350133cdb44SSatish Balay a->ht = 0; 2351133cdb44SSatish Balay a->hd = 0; 2352133cdb44SSatish Balay a->ht_size = 0; 2353133cdb44SSatish Balay a->ht_flag = oldmat->ht_flag; 235425fdafccSSatish Balay a->ht_fact = oldmat->ht_fact; 2355133cdb44SSatish Balay a->ht_total_ct = 0; 2356133cdb44SSatish Balay a->ht_insert_ct = 0; 2357133cdb44SSatish Balay 2358549d3d68SSatish Balay ierr = PetscMemcpy(a->rowners,oldmat->rowners,3*(a->size+2)*sizeof(int));CHKERRQ(ierr); 23598798bf22SSatish Balay ierr = MatStashCreate_Private(matin->comm,1,&mat->stash);CHKERRQ(ierr); 23608798bf22SSatish Balay ierr = MatStashCreate_Private(matin->comm,oldmat->bs,&mat->bstash);CHKERRQ(ierr); 23610ac07820SSatish Balay if (oldmat->colmap) { 2362aa482453SBarry Smith #if defined (PETSC_USE_CTABLE) 23630f5bd95cSBarry Smith ierr = PetscTableCreateCopy(oldmat->colmap,&a->colmap);CHKERRQ(ierr); 236448e59246SSatish Balay #else 2365*b0a32e0cSBarry Smith a->colmap = (int*)PetscMalloc((a->Nbs)*sizeof(int));CHKERRQ(ierr); 2366*b0a32e0cSBarry Smith PetscLogObjectMemory(mat,(a->Nbs)*sizeof(int)); 2367549d3d68SSatish Balay ierr = PetscMemcpy(a->colmap,oldmat->colmap,(a->Nbs)*sizeof(int));CHKERRQ(ierr); 236848e59246SSatish Balay #endif 23690ac07820SSatish Balay } else a->colmap = 0; 23700ac07820SSatish Balay if (oldmat->garray && (len = ((Mat_SeqBAIJ*)(oldmat->B->data))->nbs)) { 2371*b0a32e0cSBarry Smith ierr = PetscMalloc(len*sizeof(int),&( a->garray ));CHKERRQ(ierr); 2372*b0a32e0cSBarry Smith PetscLogObjectMemory(mat,len*sizeof(int)); 2373549d3d68SSatish Balay ierr = PetscMemcpy(a->garray,oldmat->garray,len*sizeof(int));CHKERRQ(ierr); 23740ac07820SSatish Balay } else a->garray = 0; 23750ac07820SSatish Balay 23760ac07820SSatish Balay ierr = VecDuplicate(oldmat->lvec,&a->lvec);CHKERRQ(ierr); 2377*b0a32e0cSBarry Smith PetscLogObjectParent(mat,a->lvec); 23780ac07820SSatish Balay ierr = VecScatterCopy(oldmat->Mvctx,&a->Mvctx);CHKERRQ(ierr); 2379e18c124aSSatish Balay 2380*b0a32e0cSBarry Smith PetscLogObjectParent(mat,a->Mvctx); 23812e8a6d31SBarry Smith ierr = MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr); 2382*b0a32e0cSBarry Smith PetscLogObjectParent(mat,a->A); 23832e8a6d31SBarry Smith ierr = MatDuplicate(oldmat->B,cpvalues,&a->B);CHKERRQ(ierr); 2384*b0a32e0cSBarry Smith PetscLogObjectParent(mat,a->B); 2385*b0a32e0cSBarry Smith ierr = PetscFListDuplicate(matin->qlist,&mat->qlist);CHKERRQ(ierr); 23860ac07820SSatish Balay *newmat = mat; 23873a40ed3dSBarry Smith PetscFunctionReturn(0); 23880ac07820SSatish Balay } 238957b952d6SSatish Balay 2390e090d566SSatish Balay #include "petscsys.h" 239157b952d6SSatish Balay 2392273d9f13SBarry Smith EXTERN_C_BEGIN 23935615d1e5SSatish Balay #undef __FUNC__ 2394*b0a32e0cSBarry Smith #define __FUNC__ "MatLoad_MPIBAIJ" 2395*b0a32e0cSBarry Smith int MatLoad_MPIBAIJ(PetscViewer viewer,MatType type,Mat *newmat) 239657b952d6SSatish Balay { 239757b952d6SSatish Balay Mat A; 239857b952d6SSatish Balay int i,nz,ierr,j,rstart,rend,fd; 239957b952d6SSatish Balay Scalar *vals,*buf; 240057b952d6SSatish Balay MPI_Comm comm = ((PetscObject)viewer)->comm; 240157b952d6SSatish Balay MPI_Status status; 2402cee3aa6bSSatish Balay int header[4],rank,size,*rowlengths = 0,M,N,m,*rowners,*browners,maxnz,*cols; 240357b952d6SSatish Balay int *locrowlens,*sndcounts = 0,*procsnz = 0,jj,*mycols,*ibuf; 2404f1af5d2fSBarry Smith int tag = ((PetscObject)viewer)->tag,bs=1,Mbs,mbs,extra_rows; 240557b952d6SSatish Balay int *dlens,*odlens,*mask,*masked1,*masked2,rowcount,odcount; 240657b952d6SSatish Balay int dcount,kmax,k,nzcount,tmp; 240757b952d6SSatish Balay 2408d64ed03dSBarry Smith PetscFunctionBegin; 2409*b0a32e0cSBarry Smith ierr = PetscOptionsGetInt(PETSC_NULL,"-matload_block_size",&bs,PETSC_NULL);CHKERRQ(ierr); 241057b952d6SSatish Balay 2411d132466eSBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 2412d132466eSBarry Smith ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 241357b952d6SSatish Balay if (!rank) { 2414*b0a32e0cSBarry Smith ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr); 2415e5638eb3SBarry Smith ierr = PetscBinaryRead(fd,(char *)header,4,PETSC_INT);CHKERRQ(ierr); 241629bbc08cSBarry Smith if (header[0] != MAT_COOKIE) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"not matrix object"); 2417d64ed03dSBarry Smith if (header[3] < 0) { 241829bbc08cSBarry Smith SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"Matrix stored in special format, cannot load as MPIBAIJ"); 2419d64ed03dSBarry Smith } 24206c5fab8fSBarry Smith } 2421d64ed03dSBarry Smith 2422ca161407SBarry Smith ierr = MPI_Bcast(header+1,3,MPI_INT,0,comm);CHKERRQ(ierr); 242357b952d6SSatish Balay M = header[1]; N = header[2]; 242457b952d6SSatish Balay 242529bbc08cSBarry Smith if (M != N) SETERRQ(PETSC_ERR_SUP,"Can only do square matrices"); 242657b952d6SSatish Balay 242757b952d6SSatish Balay /* 242857b952d6SSatish Balay This code adds extra rows to make sure the number of rows is 242957b952d6SSatish Balay divisible by the blocksize 243057b952d6SSatish Balay */ 243157b952d6SSatish Balay Mbs = M/bs; 243257b952d6SSatish Balay extra_rows = bs - M + bs*(Mbs); 243357b952d6SSatish Balay if (extra_rows == bs) extra_rows = 0; 243457b952d6SSatish Balay else Mbs++; 243557b952d6SSatish Balay if (extra_rows &&!rank) { 2436*b0a32e0cSBarry Smith PetscLogInfo(0,"MatLoad_MPIBAIJ:Padding loaded matrix to match blocksize\n"); 243757b952d6SSatish Balay } 2438537820f0SBarry Smith 243957b952d6SSatish Balay /* determine ownership of all rows */ 244057b952d6SSatish Balay mbs = Mbs/size + ((Mbs % size) > rank); 244157b952d6SSatish Balay m = mbs*bs; 2442*b0a32e0cSBarry Smith ierr = PetscMalloc(2*(size+2)*sizeof(int),& rowners );CHKERRQ(ierr); 2443cee3aa6bSSatish Balay browners = rowners + size + 1; 2444ca161407SBarry Smith ierr = MPI_Allgather(&mbs,1,MPI_INT,rowners+1,1,MPI_INT,comm);CHKERRQ(ierr); 244557b952d6SSatish Balay rowners[0] = 0; 2446cee3aa6bSSatish Balay for (i=2; i<=size; i++) rowners[i] += rowners[i-1]; 2447cee3aa6bSSatish Balay for (i=0; i<=size; i++) browners[i] = rowners[i]*bs; 244857b952d6SSatish Balay rstart = rowners[rank]; 244957b952d6SSatish Balay rend = rowners[rank+1]; 245057b952d6SSatish Balay 245157b952d6SSatish Balay /* distribute row lengths to all processors */ 2452*b0a32e0cSBarry Smith locrowlens = (int*)PetscMalloc((rend-rstart)*bs*sizeof(int));CHKERRQ(ierr); 245357b952d6SSatish Balay if (!rank) { 2454*b0a32e0cSBarry Smith ierr = PetscMalloc((M+extra_rows)*sizeof(int),& rowlengths );CHKERRQ(ierr); 2455e5638eb3SBarry Smith ierr = PetscBinaryRead(fd,rowlengths,M,PETSC_INT);CHKERRQ(ierr); 245657b952d6SSatish Balay for (i=0; i<extra_rows; i++) rowlengths[M+i] = 1; 2457*b0a32e0cSBarry Smith ierr = PetscMalloc(size*sizeof(int),&( sndcounts ));CHKERRQ(ierr); 2458cee3aa6bSSatish Balay for (i=0; i<size; i++) sndcounts[i] = browners[i+1] - browners[i]; 2459ca161407SBarry Smith ierr = MPI_Scatterv(rowlengths,sndcounts,browners,MPI_INT,locrowlens,(rend-rstart)*bs,MPI_INT,0,comm);CHKERRQ(ierr); 2460606d414cSSatish Balay ierr = PetscFree(sndcounts);CHKERRQ(ierr); 2461d64ed03dSBarry Smith } else { 2462ca161407SBarry Smith ierr = MPI_Scatterv(0,0,0,MPI_INT,locrowlens,(rend-rstart)*bs,MPI_INT,0,comm);CHKERRQ(ierr); 246357b952d6SSatish Balay } 246457b952d6SSatish Balay 246557b952d6SSatish Balay if (!rank) { 246657b952d6SSatish Balay /* calculate the number of nonzeros on each processor */ 2467*b0a32e0cSBarry Smith ierr = PetscMalloc(size*sizeof(int),&( procsnz ));CHKERRQ(ierr); 2468549d3d68SSatish Balay ierr = PetscMemzero(procsnz,size*sizeof(int));CHKERRQ(ierr); 246957b952d6SSatish Balay for (i=0; i<size; i++) { 247057b952d6SSatish Balay for (j=rowners[i]*bs; j< rowners[i+1]*bs; j++) { 247157b952d6SSatish Balay procsnz[i] += rowlengths[j]; 247257b952d6SSatish Balay } 247357b952d6SSatish Balay } 2474606d414cSSatish Balay ierr = PetscFree(rowlengths);CHKERRQ(ierr); 247557b952d6SSatish Balay 247657b952d6SSatish Balay /* determine max buffer needed and allocate it */ 247757b952d6SSatish Balay maxnz = 0; 247857b952d6SSatish Balay for (i=0; i<size; i++) { 247957b952d6SSatish Balay maxnz = PetscMax(maxnz,procsnz[i]); 248057b952d6SSatish Balay } 2481*b0a32e0cSBarry Smith ierr = PetscMalloc(maxnz*sizeof(int),&( cols ));CHKERRQ(ierr); 248257b952d6SSatish Balay 248357b952d6SSatish Balay /* read in my part of the matrix column indices */ 248457b952d6SSatish Balay nz = procsnz[0]; 2485*b0a32e0cSBarry Smith ierr = PetscMalloc(nz*sizeof(int),&( ibuf ));CHKERRQ(ierr); 248657b952d6SSatish Balay mycols = ibuf; 2487cee3aa6bSSatish Balay if (size == 1) nz -= extra_rows; 2488e5638eb3SBarry Smith ierr = PetscBinaryRead(fd,mycols,nz,PETSC_INT);CHKERRQ(ierr); 2489cee3aa6bSSatish Balay if (size == 1) for (i=0; i< extra_rows; i++) { mycols[nz+i] = M+i; } 2490cee3aa6bSSatish Balay 249157b952d6SSatish Balay /* read in every ones (except the last) and ship off */ 249257b952d6SSatish Balay for (i=1; i<size-1; i++) { 249357b952d6SSatish Balay nz = procsnz[i]; 2494e5638eb3SBarry Smith ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr); 2495ca161407SBarry Smith ierr = MPI_Send(cols,nz,MPI_INT,i,tag,comm);CHKERRQ(ierr); 249657b952d6SSatish Balay } 249757b952d6SSatish Balay /* read in the stuff for the last proc */ 249857b952d6SSatish Balay if (size != 1) { 249957b952d6SSatish Balay nz = procsnz[size-1] - extra_rows; /* the extra rows are not on the disk */ 2500e5638eb3SBarry Smith ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr); 250157b952d6SSatish Balay for (i=0; i<extra_rows; i++) cols[nz+i] = M+i; 2502ca161407SBarry Smith ierr = MPI_Send(cols,nz+extra_rows,MPI_INT,size-1,tag,comm);CHKERRQ(ierr); 250357b952d6SSatish Balay } 2504606d414cSSatish Balay ierr = PetscFree(cols);CHKERRQ(ierr); 2505d64ed03dSBarry Smith } else { 250657b952d6SSatish Balay /* determine buffer space needed for message */ 250757b952d6SSatish Balay nz = 0; 250857b952d6SSatish Balay for (i=0; i<m; i++) { 250957b952d6SSatish Balay nz += locrowlens[i]; 251057b952d6SSatish Balay } 2511*b0a32e0cSBarry Smith ierr = PetscMalloc(nz*sizeof(int),&( ibuf ));CHKERRQ(ierr); 251257b952d6SSatish Balay mycols = ibuf; 251357b952d6SSatish Balay /* receive message of column indices*/ 2514ca161407SBarry Smith ierr = MPI_Recv(mycols,nz,MPI_INT,0,tag,comm,&status);CHKERRQ(ierr); 2515ca161407SBarry Smith ierr = MPI_Get_count(&status,MPI_INT,&maxnz);CHKERRQ(ierr); 251629bbc08cSBarry Smith if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 251757b952d6SSatish Balay } 251857b952d6SSatish Balay 251957b952d6SSatish Balay /* loop over local rows, determining number of off diagonal entries */ 2520*b0a32e0cSBarry Smith dlens = (int*)PetscMalloc(2*(rend-rstart+1)*sizeof(int));CHKERRQ(ierr); 2521cee3aa6bSSatish Balay odlens = dlens + (rend-rstart); 2522*b0a32e0cSBarry Smith ierr = PetscMalloc(3*Mbs*sizeof(int),&( mask ));CHKERRQ(ierr); 2523549d3d68SSatish Balay ierr = PetscMemzero(mask,3*Mbs*sizeof(int));CHKERRQ(ierr); 252457b952d6SSatish Balay masked1 = mask + Mbs; 252557b952d6SSatish Balay masked2 = masked1 + Mbs; 252657b952d6SSatish Balay rowcount = 0; nzcount = 0; 252757b952d6SSatish Balay for (i=0; i<mbs; i++) { 252857b952d6SSatish Balay dcount = 0; 252957b952d6SSatish Balay odcount = 0; 253057b952d6SSatish Balay for (j=0; j<bs; j++) { 253157b952d6SSatish Balay kmax = locrowlens[rowcount]; 253257b952d6SSatish Balay for (k=0; k<kmax; k++) { 253357b952d6SSatish Balay tmp = mycols[nzcount++]/bs; 253457b952d6SSatish Balay if (!mask[tmp]) { 253557b952d6SSatish Balay mask[tmp] = 1; 253657b952d6SSatish Balay if (tmp < rstart || tmp >= rend) masked2[odcount++] = tmp; 253757b952d6SSatish Balay else masked1[dcount++] = tmp; 253857b952d6SSatish Balay } 253957b952d6SSatish Balay } 254057b952d6SSatish Balay rowcount++; 254157b952d6SSatish Balay } 2542cee3aa6bSSatish Balay 254357b952d6SSatish Balay dlens[i] = dcount; 254457b952d6SSatish Balay odlens[i] = odcount; 2545cee3aa6bSSatish Balay 254657b952d6SSatish Balay /* zero out the mask elements we set */ 254757b952d6SSatish Balay for (j=0; j<dcount; j++) mask[masked1[j]] = 0; 254857b952d6SSatish Balay for (j=0; j<odcount; j++) mask[masked2[j]] = 0; 254957b952d6SSatish Balay } 2550cee3aa6bSSatish Balay 255157b952d6SSatish Balay /* create our matrix */ 255247a75d0bSBarry Smith ierr = MatCreateMPIBAIJ(comm,bs,m,m,M+extra_rows,N+extra_rows,0,dlens,0,odlens,newmat);CHKERRQ(ierr); 255357b952d6SSatish Balay A = *newmat; 25546d4a8577SBarry Smith MatSetOption(A,MAT_COLUMNS_SORTED); 255557b952d6SSatish Balay 255657b952d6SSatish Balay if (!rank) { 2557*b0a32e0cSBarry Smith ierr = PetscMalloc(maxnz*sizeof(Scalar),&( buf ));CHKERRQ(ierr); 255857b952d6SSatish Balay /* read in my part of the matrix numerical values */ 255957b952d6SSatish Balay nz = procsnz[0]; 256057b952d6SSatish Balay vals = buf; 2561cee3aa6bSSatish Balay mycols = ibuf; 2562cee3aa6bSSatish Balay if (size == 1) nz -= extra_rows; 2563e5638eb3SBarry Smith ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 2564cee3aa6bSSatish Balay if (size == 1) for (i=0; i< extra_rows; i++) { vals[nz+i] = 1.0; } 2565537820f0SBarry Smith 256657b952d6SSatish Balay /* insert into matrix */ 256757b952d6SSatish Balay jj = rstart*bs; 256857b952d6SSatish Balay for (i=0; i<m; i++) { 2569b48991e4SBarry Smith ierr = MatSetValues(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr); 257057b952d6SSatish Balay mycols += locrowlens[i]; 257157b952d6SSatish Balay vals += locrowlens[i]; 257257b952d6SSatish Balay jj++; 257357b952d6SSatish Balay } 257457b952d6SSatish Balay /* read in other processors (except the last one) and ship out */ 257557b952d6SSatish Balay for (i=1; i<size-1; i++) { 257657b952d6SSatish Balay nz = procsnz[i]; 257757b952d6SSatish Balay vals = buf; 2578e5638eb3SBarry Smith ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 2579ca161407SBarry Smith ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,A->tag,comm);CHKERRQ(ierr); 258057b952d6SSatish Balay } 258157b952d6SSatish Balay /* the last proc */ 258257b952d6SSatish Balay if (size != 1){ 258357b952d6SSatish Balay nz = procsnz[i] - extra_rows; 2584cee3aa6bSSatish Balay vals = buf; 2585e5638eb3SBarry Smith ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 258657b952d6SSatish Balay for (i=0; i<extra_rows; i++) vals[nz+i] = 1.0; 2587ca161407SBarry Smith ierr = MPI_Send(vals,nz+extra_rows,MPIU_SCALAR,size-1,A->tag,comm);CHKERRQ(ierr); 258857b952d6SSatish Balay } 2589606d414cSSatish Balay ierr = PetscFree(procsnz);CHKERRQ(ierr); 2590d64ed03dSBarry Smith } else { 259157b952d6SSatish Balay /* receive numeric values */ 2592*b0a32e0cSBarry Smith ierr = PetscMalloc(nz*sizeof(Scalar),&( buf ));CHKERRQ(ierr); 259357b952d6SSatish Balay 259457b952d6SSatish Balay /* receive message of values*/ 259557b952d6SSatish Balay vals = buf; 2596cee3aa6bSSatish Balay mycols = ibuf; 2597ca161407SBarry Smith ierr = MPI_Recv(vals,nz,MPIU_SCALAR,0,A->tag,comm,&status);CHKERRQ(ierr); 2598ca161407SBarry Smith ierr = MPI_Get_count(&status,MPIU_SCALAR,&maxnz);CHKERRQ(ierr); 259929bbc08cSBarry Smith if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 260057b952d6SSatish Balay 260157b952d6SSatish Balay /* insert into matrix */ 260257b952d6SSatish Balay jj = rstart*bs; 2603cee3aa6bSSatish Balay for (i=0; i<m; i++) { 2604b48991e4SBarry Smith ierr = MatSetValues(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr); 260557b952d6SSatish Balay mycols += locrowlens[i]; 260657b952d6SSatish Balay vals += locrowlens[i]; 260757b952d6SSatish Balay jj++; 260857b952d6SSatish Balay } 260957b952d6SSatish Balay } 2610606d414cSSatish Balay ierr = PetscFree(locrowlens);CHKERRQ(ierr); 2611606d414cSSatish Balay ierr = PetscFree(buf);CHKERRQ(ierr); 2612606d414cSSatish Balay ierr = PetscFree(ibuf);CHKERRQ(ierr); 2613606d414cSSatish Balay ierr = PetscFree(rowners);CHKERRQ(ierr); 2614606d414cSSatish Balay ierr = PetscFree(dlens);CHKERRQ(ierr); 2615606d414cSSatish Balay ierr = PetscFree(mask);CHKERRQ(ierr); 26166d4a8577SBarry Smith ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 26176d4a8577SBarry Smith ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 26183a40ed3dSBarry Smith PetscFunctionReturn(0); 261957b952d6SSatish Balay } 2620273d9f13SBarry Smith EXTERN_C_END 262157b952d6SSatish Balay 2622133cdb44SSatish Balay #undef __FUNC__ 2623*b0a32e0cSBarry Smith #define __FUNC__ "MatMPIBAIJSetHashTableFactor" 2624133cdb44SSatish Balay /*@ 2625133cdb44SSatish Balay MatMPIBAIJSetHashTableFactor - Sets the factor required to compute the size of the HashTable. 2626133cdb44SSatish Balay 2627133cdb44SSatish Balay Input Parameters: 2628133cdb44SSatish Balay . mat - the matrix 2629133cdb44SSatish Balay . fact - factor 2630133cdb44SSatish Balay 2631fee21e36SBarry Smith Collective on Mat 2632fee21e36SBarry Smith 26338c890885SBarry Smith Level: advanced 26348c890885SBarry Smith 2635133cdb44SSatish Balay Notes: 2636133cdb44SSatish Balay This can also be set by the command line option: -mat_use_hash_table fact 2637133cdb44SSatish Balay 2638133cdb44SSatish Balay .keywords: matrix, hashtable, factor, HT 2639133cdb44SSatish Balay 2640133cdb44SSatish Balay .seealso: MatSetOption() 2641133cdb44SSatish Balay @*/ 2642329f5518SBarry Smith int MatMPIBAIJSetHashTableFactor(Mat mat,PetscReal fact) 2643133cdb44SSatish Balay { 264425fdafccSSatish Balay Mat_MPIBAIJ *baij; 2645273d9f13SBarry Smith int ierr; 2646273d9f13SBarry Smith PetscTruth flg; 2647133cdb44SSatish Balay 2648133cdb44SSatish Balay PetscFunctionBegin; 2649133cdb44SSatish Balay PetscValidHeaderSpecific(mat,MAT_COOKIE); 2650273d9f13SBarry Smith ierr = PetscTypeCompare((PetscObject)mat,MATMPIBAIJ,&flg);CHKERRQ(ierr); 2651273d9f13SBarry Smith if (!flg) { 265229bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_WRONG,"Incorrect matrix type. Use MPIBAIJ only."); 2653133cdb44SSatish Balay } 2654133cdb44SSatish Balay baij = (Mat_MPIBAIJ*)mat->data; 2655133cdb44SSatish Balay baij->ht_fact = fact; 2656133cdb44SSatish Balay PetscFunctionReturn(0); 2657133cdb44SSatish Balay } 2658