1be1d678aSKris Buschelman #define PETSCMAT_DLL 279bdfe76SSatish Balay 37c4f633dSBarry Smith #include "../src/mat/impls/baij/mpi/mpibaij.h" /*I "petscmat.h" I*/ 479bdfe76SSatish Balay 5dfbe8321SBarry Smith EXTERN PetscErrorCode MatSetUpMultiply_MPIBAIJ(Mat); 6dfbe8321SBarry Smith EXTERN PetscErrorCode DisAssemble_MPIBAIJ(Mat); 7b24ad042SBarry Smith EXTERN PetscErrorCode MatIncreaseOverlap_MPIBAIJ(Mat,PetscInt,IS[],PetscInt); 8b24ad042SBarry Smith EXTERN PetscErrorCode MatGetSubMatrices_MPIBAIJ(Mat,PetscInt,const IS[],const IS[],MatReuse,Mat *[]); 9b24ad042SBarry Smith EXTERN PetscErrorCode MatGetValues_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt [],PetscScalar []); 10b24ad042SBarry Smith EXTERN PetscErrorCode MatSetValues_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt [],const PetscScalar [],InsertMode); 11b24ad042SBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode); 12b24ad042SBarry Smith EXTERN PetscErrorCode MatGetRow_SeqBAIJ(Mat,PetscInt,PetscInt*,PetscInt*[],PetscScalar*[]); 13b24ad042SBarry Smith EXTERN PetscErrorCode MatRestoreRow_SeqBAIJ(Mat,PetscInt,PetscInt*,PetscInt*[],PetscScalar*[]); 14f4df32b1SMatthew Knepley EXTERN PetscErrorCode MatZeroRows_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscScalar); 1593fea6afSBarry Smith 164a2ae208SSatish Balay #undef __FUNCT__ 17985db425SBarry Smith #define __FUNCT__ "MatGetRowMaxAbs_MPIBAIJ" 18985db425SBarry Smith PetscErrorCode MatGetRowMaxAbs_MPIBAIJ(Mat A,Vec v,PetscInt idx[]) 197843d17aSBarry Smith { 207843d17aSBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 21dfbe8321SBarry Smith PetscErrorCode ierr; 22985db425SBarry Smith PetscInt i,*idxb = 0; 2387828ca2SBarry Smith PetscScalar *va,*vb; 247843d17aSBarry Smith Vec vtmp; 257843d17aSBarry Smith 267843d17aSBarry Smith PetscFunctionBegin; 27985db425SBarry Smith ierr = MatGetRowMaxAbs(a->A,v,idx);CHKERRQ(ierr); 281ebc52fbSHong Zhang ierr = VecGetArray(v,&va);CHKERRQ(ierr); 29985db425SBarry Smith if (idx) { 30192daf7cSBarry Smith for (i=0; i<A->rmap->n; i++) {if (PetscAbsScalar(va[i])) idx[i] += A->cmap->rstart;} 31985db425SBarry Smith } 327843d17aSBarry Smith 33d0f46423SBarry Smith ierr = VecCreateSeq(PETSC_COMM_SELF,A->rmap->n,&vtmp);CHKERRQ(ierr); 34d0f46423SBarry Smith if (idx) {ierr = PetscMalloc(A->rmap->n*sizeof(PetscInt),&idxb);CHKERRQ(ierr);} 35985db425SBarry Smith ierr = MatGetRowMaxAbs(a->B,vtmp,idxb);CHKERRQ(ierr); 361ebc52fbSHong Zhang ierr = VecGetArray(vtmp,&vb);CHKERRQ(ierr); 377843d17aSBarry Smith 38d0f46423SBarry Smith for (i=0; i<A->rmap->n; i++){ 39d0f46423SBarry Smith if (PetscAbsScalar(va[i]) < PetscAbsScalar(vb[i])) {va[i] = vb[i]; if (idx) idx[i] = A->cmap->bs*a->garray[idxb[i]/A->cmap->bs] + (idxb[i] % A->cmap->bs);} 407843d17aSBarry Smith } 417843d17aSBarry Smith 421ebc52fbSHong Zhang ierr = VecRestoreArray(v,&va);CHKERRQ(ierr); 431ebc52fbSHong Zhang ierr = VecRestoreArray(vtmp,&vb);CHKERRQ(ierr); 44985db425SBarry Smith if (idxb) {ierr = PetscFree(idxb);CHKERRQ(ierr);} 45ac355199SBarry Smith ierr = VecDestroy(vtmp);CHKERRQ(ierr); 467843d17aSBarry Smith PetscFunctionReturn(0); 477843d17aSBarry Smith } 487843d17aSBarry Smith 497fc3c18eSBarry Smith EXTERN_C_BEGIN 504a2ae208SSatish Balay #undef __FUNCT__ 514a2ae208SSatish Balay #define __FUNCT__ "MatStoreValues_MPIBAIJ" 52be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatStoreValues_MPIBAIJ(Mat mat) 537fc3c18eSBarry Smith { 547fc3c18eSBarry Smith Mat_MPIBAIJ *aij = (Mat_MPIBAIJ *)mat->data; 55dfbe8321SBarry Smith PetscErrorCode ierr; 567fc3c18eSBarry Smith 577fc3c18eSBarry Smith PetscFunctionBegin; 587fc3c18eSBarry Smith ierr = MatStoreValues(aij->A);CHKERRQ(ierr); 597fc3c18eSBarry Smith ierr = MatStoreValues(aij->B);CHKERRQ(ierr); 607fc3c18eSBarry Smith PetscFunctionReturn(0); 617fc3c18eSBarry Smith } 627fc3c18eSBarry Smith EXTERN_C_END 637fc3c18eSBarry Smith 647fc3c18eSBarry Smith EXTERN_C_BEGIN 654a2ae208SSatish Balay #undef __FUNCT__ 664a2ae208SSatish Balay #define __FUNCT__ "MatRetrieveValues_MPIBAIJ" 67be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatRetrieveValues_MPIBAIJ(Mat mat) 687fc3c18eSBarry Smith { 697fc3c18eSBarry Smith Mat_MPIBAIJ *aij = (Mat_MPIBAIJ *)mat->data; 70dfbe8321SBarry Smith PetscErrorCode ierr; 717fc3c18eSBarry Smith 727fc3c18eSBarry Smith PetscFunctionBegin; 737fc3c18eSBarry Smith ierr = MatRetrieveValues(aij->A);CHKERRQ(ierr); 747fc3c18eSBarry Smith ierr = MatRetrieveValues(aij->B);CHKERRQ(ierr); 757fc3c18eSBarry Smith PetscFunctionReturn(0); 767fc3c18eSBarry Smith } 777fc3c18eSBarry Smith EXTERN_C_END 787fc3c18eSBarry Smith 79537820f0SBarry Smith /* 80537820f0SBarry Smith Local utility routine that creates a mapping from the global column 8157b952d6SSatish Balay number to the local number in the off-diagonal part of the local 8257b952d6SSatish Balay storage of the matrix. This is done in a non scable way since the 8357b952d6SSatish Balay length of colmap equals the global matrix length. 8457b952d6SSatish Balay */ 854a2ae208SSatish Balay #undef __FUNCT__ 864a2ae208SSatish Balay #define __FUNCT__ "CreateColmap_MPIBAIJ_Private" 87dfbe8321SBarry Smith PetscErrorCode CreateColmap_MPIBAIJ_Private(Mat mat) 8857b952d6SSatish Balay { 8957b952d6SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 9057b952d6SSatish Balay Mat_SeqBAIJ *B = (Mat_SeqBAIJ*)baij->B->data; 916849ba73SBarry Smith PetscErrorCode ierr; 92d0f46423SBarry Smith PetscInt nbs = B->nbs,i,bs=mat->rmap->bs; 9357b952d6SSatish Balay 94d64ed03dSBarry Smith PetscFunctionBegin; 95aa482453SBarry Smith #if defined (PETSC_USE_CTABLE) 96f14a1c24SBarry Smith ierr = PetscTableCreate(baij->nbs,&baij->colmap);CHKERRQ(ierr); 9748e59246SSatish Balay for (i=0; i<nbs; i++){ 980f5bd95cSBarry Smith ierr = PetscTableAdd(baij->colmap,baij->garray[i]+1,i*bs+1);CHKERRQ(ierr); 9948e59246SSatish Balay } 10048e59246SSatish Balay #else 101b24ad042SBarry Smith ierr = PetscMalloc((baij->Nbs+1)*sizeof(PetscInt),&baij->colmap);CHKERRQ(ierr); 10252e6d16bSBarry Smith ierr = PetscLogObjectMemory(mat,baij->Nbs*sizeof(PetscInt));CHKERRQ(ierr); 103b24ad042SBarry Smith ierr = PetscMemzero(baij->colmap,baij->Nbs*sizeof(PetscInt));CHKERRQ(ierr); 104928fc39bSSatish Balay for (i=0; i<nbs; i++) baij->colmap[baij->garray[i]] = i*bs+1; 10548e59246SSatish Balay #endif 1063a40ed3dSBarry Smith PetscFunctionReturn(0); 10757b952d6SSatish Balay } 10857b952d6SSatish Balay 10980c1aa95SSatish Balay #define CHUNKSIZE 10 11080c1aa95SSatish Balay 111f5e9677aSSatish Balay #define MatSetValues_SeqBAIJ_A_Private(row,col,value,addv) \ 11280c1aa95SSatish Balay { \ 11380c1aa95SSatish Balay \ 11480c1aa95SSatish Balay brow = row/bs; \ 11580c1aa95SSatish Balay rp = aj + ai[brow]; ap = aa + bs2*ai[brow]; \ 116ac7a638eSSatish Balay rmax = aimax[brow]; nrow = ailen[brow]; \ 11780c1aa95SSatish Balay bcol = col/bs; \ 11880c1aa95SSatish Balay ridx = row % bs; cidx = col % bs; \ 119ab26458aSBarry Smith low = 0; high = nrow; \ 120ab26458aSBarry Smith while (high-low > 3) { \ 121ab26458aSBarry Smith t = (low+high)/2; \ 122ab26458aSBarry Smith if (rp[t] > bcol) high = t; \ 123ab26458aSBarry Smith else low = t; \ 124ab26458aSBarry Smith } \ 125ab26458aSBarry Smith for (_i=low; _i<high; _i++) { \ 12680c1aa95SSatish Balay if (rp[_i] > bcol) break; \ 12780c1aa95SSatish Balay if (rp[_i] == bcol) { \ 12880c1aa95SSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 129eada6651SSatish Balay if (addv == ADD_VALUES) *bap += value; \ 130eada6651SSatish Balay else *bap = value; \ 131ac7a638eSSatish Balay goto a_noinsert; \ 13280c1aa95SSatish Balay } \ 13380c1aa95SSatish Balay } \ 13489280ab3SLois Curfman McInnes if (a->nonew == 1) goto a_noinsert; \ 135085a36d4SBarry Smith if (a->nonew == -1) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \ 136421e10b8SBarry Smith MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,brow,bcol,rmax,aa,ai,aj,rp,ap,aimax,a->nonew,MatScalar); \ 13780c1aa95SSatish Balay N = nrow++ - 1; \ 13880c1aa95SSatish Balay /* shift up all the later entries in this row */ \ 13980c1aa95SSatish Balay for (ii=N; ii>=_i; ii--) { \ 14080c1aa95SSatish Balay rp[ii+1] = rp[ii]; \ 1413eda8832SBarry Smith ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 14280c1aa95SSatish Balay } \ 1433eda8832SBarry Smith if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr); } \ 14480c1aa95SSatish Balay rp[_i] = bcol; \ 14580c1aa95SSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 146ac7a638eSSatish Balay a_noinsert:; \ 14780c1aa95SSatish Balay ailen[brow] = nrow; \ 14880c1aa95SSatish Balay } 14957b952d6SSatish Balay 150ac7a638eSSatish Balay #define MatSetValues_SeqBAIJ_B_Private(row,col,value,addv) \ 151ac7a638eSSatish Balay { \ 152ac7a638eSSatish Balay brow = row/bs; \ 153ac7a638eSSatish Balay rp = bj + bi[brow]; ap = ba + bs2*bi[brow]; \ 154ac7a638eSSatish Balay rmax = bimax[brow]; nrow = bilen[brow]; \ 155ac7a638eSSatish Balay bcol = col/bs; \ 156ac7a638eSSatish Balay ridx = row % bs; cidx = col % bs; \ 157ac7a638eSSatish Balay low = 0; high = nrow; \ 158ac7a638eSSatish Balay while (high-low > 3) { \ 159ac7a638eSSatish Balay t = (low+high)/2; \ 160ac7a638eSSatish Balay if (rp[t] > bcol) high = t; \ 161ac7a638eSSatish Balay else low = t; \ 162ac7a638eSSatish Balay } \ 163ac7a638eSSatish Balay for (_i=low; _i<high; _i++) { \ 164ac7a638eSSatish Balay if (rp[_i] > bcol) break; \ 165ac7a638eSSatish Balay if (rp[_i] == bcol) { \ 166ac7a638eSSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 167ac7a638eSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 168ac7a638eSSatish Balay else *bap = value; \ 169ac7a638eSSatish Balay goto b_noinsert; \ 170ac7a638eSSatish Balay } \ 171ac7a638eSSatish Balay } \ 17289280ab3SLois Curfman McInnes if (b->nonew == 1) goto b_noinsert; \ 173085a36d4SBarry Smith if (b->nonew == -1) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \ 174421e10b8SBarry Smith MatSeqXAIJReallocateAIJ(B,b->mbs,bs2,nrow,brow,bcol,rmax,ba,bi,bj,rp,ap,bimax,b->nonew,MatScalar); \ 175085a36d4SBarry Smith CHKMEMQ;\ 176ac7a638eSSatish Balay N = nrow++ - 1; \ 177ac7a638eSSatish Balay /* shift up all the later entries in this row */ \ 178ac7a638eSSatish Balay for (ii=N; ii>=_i; ii--) { \ 179ac7a638eSSatish Balay rp[ii+1] = rp[ii]; \ 1803eda8832SBarry Smith ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 181ac7a638eSSatish Balay } \ 1823eda8832SBarry Smith if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr);} \ 183ac7a638eSSatish Balay rp[_i] = bcol; \ 184ac7a638eSSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 185ac7a638eSSatish Balay b_noinsert:; \ 186ac7a638eSSatish Balay bilen[brow] = nrow; \ 187ac7a638eSSatish Balay } 188ac7a638eSSatish Balay 1894a2ae208SSatish Balay #undef __FUNCT__ 1904a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_MPIBAIJ" 191b24ad042SBarry Smith PetscErrorCode MatSetValues_MPIBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv) 19257b952d6SSatish Balay { 19357b952d6SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 19493fea6afSBarry Smith MatScalar value; 195273d9f13SBarry Smith PetscTruth roworiented = baij->roworiented; 196dfbe8321SBarry Smith PetscErrorCode ierr; 197b24ad042SBarry Smith PetscInt i,j,row,col; 198d0f46423SBarry Smith PetscInt rstart_orig=mat->rmap->rstart; 199d0f46423SBarry Smith PetscInt rend_orig=mat->rmap->rend,cstart_orig=mat->cmap->rstart; 200d0f46423SBarry Smith PetscInt cend_orig=mat->cmap->rend,bs=mat->rmap->bs; 20157b952d6SSatish Balay 202eada6651SSatish Balay /* Some Variables required in the macro */ 20380c1aa95SSatish Balay Mat A = baij->A; 20480c1aa95SSatish Balay Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)(A)->data; 205b24ad042SBarry Smith PetscInt *aimax=a->imax,*ai=a->i,*ailen=a->ilen,*aj=a->j; 2063eda8832SBarry Smith MatScalar *aa=a->a; 207ac7a638eSSatish Balay 208ac7a638eSSatish Balay Mat B = baij->B; 209ac7a638eSSatish Balay Mat_SeqBAIJ *b = (Mat_SeqBAIJ*)(B)->data; 210b24ad042SBarry Smith PetscInt *bimax=b->imax,*bi=b->i,*bilen=b->ilen,*bj=b->j; 2113eda8832SBarry Smith MatScalar *ba=b->a; 212ac7a638eSSatish Balay 213b24ad042SBarry Smith PetscInt *rp,ii,nrow,_i,rmax,N,brow,bcol; 214b24ad042SBarry Smith PetscInt low,high,t,ridx,cidx,bs2=a->bs2; 2153eda8832SBarry Smith MatScalar *ap,*bap; 21680c1aa95SSatish Balay 217d64ed03dSBarry Smith PetscFunctionBegin; 21857b952d6SSatish Balay for (i=0; i<m; i++) { 2195ef9f2a5SBarry Smith if (im[i] < 0) continue; 2202515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 221d0f46423SBarry Smith if (im[i] >= mat->rmap->N) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],mat->rmap->N-1); 222639f9d9dSBarry Smith #endif 22357b952d6SSatish Balay if (im[i] >= rstart_orig && im[i] < rend_orig) { 22457b952d6SSatish Balay row = im[i] - rstart_orig; 22557b952d6SSatish Balay for (j=0; j<n; j++) { 22657b952d6SSatish Balay if (in[j] >= cstart_orig && in[j] < cend_orig){ 22757b952d6SSatish Balay col = in[j] - cstart_orig; 22857b952d6SSatish Balay if (roworiented) value = v[i*n+j]; else value = v[i+j*m]; 229f5e9677aSSatish Balay MatSetValues_SeqBAIJ_A_Private(row,col,value,addv); 23080c1aa95SSatish Balay /* ierr = MatSetValues_SeqBAIJ(baij->A,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 23173959e64SBarry Smith } else if (in[j] < 0) continue; 2322515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 233d0f46423SBarry Smith else if (in[j] >= mat->cmap->N) {SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",in[i],mat->cmap->N-1);} 234639f9d9dSBarry Smith #endif 23557b952d6SSatish Balay else { 23657b952d6SSatish Balay if (mat->was_assembled) { 237905e6a2fSBarry Smith if (!baij->colmap) { 238905e6a2fSBarry Smith ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 239905e6a2fSBarry Smith } 240aa482453SBarry Smith #if defined (PETSC_USE_CTABLE) 2410f5bd95cSBarry Smith ierr = PetscTableFind(baij->colmap,in[j]/bs + 1,&col);CHKERRQ(ierr); 242bba1ac68SSatish Balay col = col - 1; 24348e59246SSatish Balay #else 244bba1ac68SSatish Balay col = baij->colmap[in[j]/bs] - 1; 24548e59246SSatish Balay #endif 24657b952d6SSatish Balay if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) { 24757b952d6SSatish Balay ierr = DisAssemble_MPIBAIJ(mat);CHKERRQ(ierr); 2488295de27SSatish Balay col = in[j]; 2499bf004c3SSatish Balay /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */ 2509bf004c3SSatish Balay B = baij->B; 2519bf004c3SSatish Balay b = (Mat_SeqBAIJ*)(B)->data; 2529bf004c3SSatish Balay bimax=b->imax;bi=b->i;bilen=b->ilen;bj=b->j; 2539bf004c3SSatish Balay ba=b->a; 254bba1ac68SSatish Balay } else col += in[j]%bs; 2558295de27SSatish Balay } else col = in[j]; 25657b952d6SSatish Balay if (roworiented) value = v[i*n+j]; else value = v[i+j*m]; 25790da58bdSSatish Balay MatSetValues_SeqBAIJ_B_Private(row,col,value,addv); 25890da58bdSSatish Balay /* ierr = MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 25957b952d6SSatish Balay } 26057b952d6SSatish Balay } 261d64ed03dSBarry Smith } else { 26290f02eecSBarry Smith if (!baij->donotstash) { 263ff2fd236SBarry Smith if (roworiented) { 264b400d20cSBarry Smith ierr = MatStashValuesRow_Private(&mat->stash,im[i],n,in,v+i*n,PETSC_FALSE);CHKERRQ(ierr); 265ff2fd236SBarry Smith } else { 266b400d20cSBarry Smith ierr = MatStashValuesCol_Private(&mat->stash,im[i],n,in,v+i,m,PETSC_FALSE);CHKERRQ(ierr); 26757b952d6SSatish Balay } 26857b952d6SSatish Balay } 26957b952d6SSatish Balay } 27090f02eecSBarry Smith } 2713a40ed3dSBarry Smith PetscFunctionReturn(0); 27257b952d6SSatish Balay } 27357b952d6SSatish Balay 2744a2ae208SSatish Balay #undef __FUNCT__ 27597e5c40aSBarry Smith #define __FUNCT__ "MatSetValuesBlocked_MPIBAIJ" 27697e5c40aSBarry Smith PetscErrorCode MatSetValuesBlocked_MPIBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv) 277ab26458aSBarry Smith { 278ab26458aSBarry Smith Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 279dd6ea824SBarry Smith const PetscScalar *value; 280f15d580aSBarry Smith MatScalar *barray=baij->barray; 281273d9f13SBarry Smith PetscTruth roworiented = baij->roworiented; 282dfbe8321SBarry Smith PetscErrorCode ierr; 283899cda47SBarry Smith PetscInt i,j,ii,jj,row,col,rstart=baij->rstartbs; 284899cda47SBarry Smith PetscInt rend=baij->rendbs,cstart=baij->cstartbs,stepval; 285d0f46423SBarry Smith PetscInt cend=baij->cendbs,bs=mat->rmap->bs,bs2=baij->bs2; 286ab26458aSBarry Smith 287b16ae2b1SBarry Smith PetscFunctionBegin; 28830793edcSSatish Balay if(!barray) { 28982502324SSatish Balay ierr = PetscMalloc(bs2*sizeof(MatScalar),&barray);CHKERRQ(ierr); 29082502324SSatish Balay baij->barray = barray; 29130793edcSSatish Balay } 29230793edcSSatish Balay 293ab26458aSBarry Smith if (roworiented) { 294ab26458aSBarry Smith stepval = (n-1)*bs; 295ab26458aSBarry Smith } else { 296ab26458aSBarry Smith stepval = (m-1)*bs; 297ab26458aSBarry Smith } 298ab26458aSBarry Smith for (i=0; i<m; i++) { 2995ef9f2a5SBarry Smith if (im[i] < 0) continue; 3002515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 30177431f27SBarry Smith if (im[i] >= baij->Mbs) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large, row %D max %D",im[i],baij->Mbs-1); 302ab26458aSBarry Smith #endif 303ab26458aSBarry Smith if (im[i] >= rstart && im[i] < rend) { 304ab26458aSBarry Smith row = im[i] - rstart; 305ab26458aSBarry Smith for (j=0; j<n; j++) { 30615b57d14SSatish Balay /* If NumCol = 1 then a copy is not required */ 30715b57d14SSatish Balay if ((roworiented) && (n == 1)) { 308f15d580aSBarry Smith barray = (MatScalar*)v + i*bs2; 30915b57d14SSatish Balay } else if((!roworiented) && (m == 1)) { 310f15d580aSBarry Smith barray = (MatScalar*)v + j*bs2; 31115b57d14SSatish Balay } else { /* Here a copy is required */ 312ab26458aSBarry Smith if (roworiented) { 313ab26458aSBarry Smith value = v + i*(stepval+bs)*bs + j*bs; 314ab26458aSBarry Smith } else { 315ab26458aSBarry Smith value = v + j*(stepval+bs)*bs + i*bs; 316abef11f7SSatish Balay } 31747513183SBarry Smith for (ii=0; ii<bs; ii++,value+=stepval) { 31847513183SBarry Smith for (jj=0; jj<bs; jj++) { 31930793edcSSatish Balay *barray++ = *value++; 32047513183SBarry Smith } 32147513183SBarry Smith } 32230793edcSSatish Balay barray -=bs2; 32315b57d14SSatish Balay } 324abef11f7SSatish Balay 325abef11f7SSatish Balay if (in[j] >= cstart && in[j] < cend){ 326abef11f7SSatish Balay col = in[j] - cstart; 32797e5c40aSBarry Smith ierr = MatSetValuesBlocked_SeqBAIJ(baij->A,1,&row,1,&col,barray,addv);CHKERRQ(ierr); 328ab26458aSBarry Smith } 3295ef9f2a5SBarry Smith else if (in[j] < 0) continue; 3302515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 33177431f27SBarry Smith else if (in[j] >= baij->Nbs) {SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large, col %D max %D",in[j],baij->Nbs-1);} 332ab26458aSBarry Smith #endif 333ab26458aSBarry Smith else { 334ab26458aSBarry Smith if (mat->was_assembled) { 335ab26458aSBarry Smith if (!baij->colmap) { 336ab26458aSBarry Smith ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 337ab26458aSBarry Smith } 338a5eb4965SSatish Balay 3392515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 340aa482453SBarry Smith #if defined (PETSC_USE_CTABLE) 341b24ad042SBarry Smith { PetscInt data; 3420f5bd95cSBarry Smith ierr = PetscTableFind(baij->colmap,in[j]+1,&data);CHKERRQ(ierr); 34329bbc08cSBarry Smith if ((data - 1) % bs) SETERRQ(PETSC_ERR_PLIB,"Incorrect colmap"); 344fa46199cSSatish Balay } 34548e59246SSatish Balay #else 34629bbc08cSBarry Smith if ((baij->colmap[in[j]] - 1) % bs) SETERRQ(PETSC_ERR_PLIB,"Incorrect colmap"); 347a5eb4965SSatish Balay #endif 34848e59246SSatish Balay #endif 349aa482453SBarry Smith #if defined (PETSC_USE_CTABLE) 3500f5bd95cSBarry Smith ierr = PetscTableFind(baij->colmap,in[j]+1,&col);CHKERRQ(ierr); 351fa46199cSSatish Balay col = (col - 1)/bs; 35248e59246SSatish Balay #else 353a5eb4965SSatish Balay col = (baij->colmap[in[j]] - 1)/bs; 35448e59246SSatish Balay #endif 355ab26458aSBarry Smith if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) { 356ab26458aSBarry Smith ierr = DisAssemble_MPIBAIJ(mat);CHKERRQ(ierr); 357ab26458aSBarry Smith col = in[j]; 358ab26458aSBarry Smith } 359ab26458aSBarry Smith } 360ab26458aSBarry Smith else col = in[j]; 36197e5c40aSBarry Smith ierr = MatSetValuesBlocked_SeqBAIJ(baij->B,1,&row,1,&col,barray,addv);CHKERRQ(ierr); 362ab26458aSBarry Smith } 363ab26458aSBarry Smith } 364d64ed03dSBarry Smith } else { 365ab26458aSBarry Smith if (!baij->donotstash) { 366ff2fd236SBarry Smith if (roworiented) { 3676fa18ffdSBarry Smith ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 368ff2fd236SBarry Smith } else { 3696fa18ffdSBarry Smith ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 370ff2fd236SBarry Smith } 371abef11f7SSatish Balay } 372ab26458aSBarry Smith } 373ab26458aSBarry Smith } 3743a40ed3dSBarry Smith PetscFunctionReturn(0); 375ab26458aSBarry Smith } 3766fa18ffdSBarry Smith 3770bdbc534SSatish Balay #define HASH_KEY 0.6180339887 378b24ad042SBarry Smith #define HASH(size,key,tmp) (tmp = (key)*HASH_KEY,(PetscInt)((size)*(tmp-(PetscInt)tmp))) 379b24ad042SBarry Smith /* #define HASH(size,key) ((PetscInt)((size)*fmod(((key)*HASH_KEY),1))) */ 380b24ad042SBarry Smith /* #define HASH(size,key,tmp) ((PetscInt)((size)*fmod(((key)*HASH_KEY),1))) */ 3814a2ae208SSatish Balay #undef __FUNCT__ 38297e5c40aSBarry Smith #define __FUNCT__ "MatSetValues_MPIBAIJ_HT" 38397e5c40aSBarry Smith PetscErrorCode MatSetValues_MPIBAIJ_HT(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv) 3840bdbc534SSatish Balay { 3850bdbc534SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 386273d9f13SBarry Smith PetscTruth roworiented = baij->roworiented; 387dfbe8321SBarry Smith PetscErrorCode ierr; 388b24ad042SBarry Smith PetscInt i,j,row,col; 389d0f46423SBarry Smith PetscInt rstart_orig=mat->rmap->rstart; 390d0f46423SBarry Smith PetscInt rend_orig=mat->rmap->rend,Nbs=baij->Nbs; 391d0f46423SBarry Smith PetscInt h1,key,size=baij->ht_size,bs=mat->rmap->bs,*HT=baij->ht,idx; 392329f5518SBarry Smith PetscReal tmp; 3933eda8832SBarry Smith MatScalar **HD = baij->hd,value; 3942515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 395b24ad042SBarry Smith PetscInt total_ct=baij->ht_total_ct,insert_ct=baij->ht_insert_ct; 3964a15367fSSatish Balay #endif 3970bdbc534SSatish Balay 3980bdbc534SSatish Balay PetscFunctionBegin; 3990bdbc534SSatish Balay 4000bdbc534SSatish Balay for (i=0; i<m; i++) { 4012515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 40229bbc08cSBarry Smith if (im[i] < 0) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Negative row"); 403d0f46423SBarry Smith if (im[i] >= mat->rmap->N) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],mat->rmap->N-1); 4040bdbc534SSatish Balay #endif 4050bdbc534SSatish Balay row = im[i]; 406c2760754SSatish Balay if (row >= rstart_orig && row < rend_orig) { 4070bdbc534SSatish Balay for (j=0; j<n; j++) { 4080bdbc534SSatish Balay col = in[j]; 4096fa18ffdSBarry Smith if (roworiented) value = v[i*n+j]; else value = v[i+j*m]; 410b24ad042SBarry Smith /* Look up PetscInto the Hash Table */ 411c2760754SSatish Balay key = (row/bs)*Nbs+(col/bs)+1; 412c2760754SSatish Balay h1 = HASH(size,key,tmp); 4130bdbc534SSatish Balay 414c2760754SSatish Balay 415c2760754SSatish Balay idx = h1; 4162515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 417187ce0cbSSatish Balay insert_ct++; 418187ce0cbSSatish Balay total_ct++; 419187ce0cbSSatish Balay if (HT[idx] != key) { 420187ce0cbSSatish Balay for (idx=h1; (idx<size) && (HT[idx]!=key); idx++,total_ct++); 421187ce0cbSSatish Balay if (idx == size) { 422187ce0cbSSatish Balay for (idx=0; (idx<h1) && (HT[idx]!=key); idx++,total_ct++); 423187ce0cbSSatish Balay if (idx == h1) { 42477431f27SBarry Smith SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"(%D,%D) has no entry in the hash table", row, col); 425187ce0cbSSatish Balay } 426187ce0cbSSatish Balay } 427187ce0cbSSatish Balay } 428187ce0cbSSatish Balay #else 429c2760754SSatish Balay if (HT[idx] != key) { 430c2760754SSatish Balay for (idx=h1; (idx<size) && (HT[idx]!=key); idx++); 431c2760754SSatish Balay if (idx == size) { 432c2760754SSatish Balay for (idx=0; (idx<h1) && (HT[idx]!=key); idx++); 433c2760754SSatish Balay if (idx == h1) { 43477431f27SBarry Smith SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"(%D,%D) has no entry in the hash table", row, col); 435c2760754SSatish Balay } 436c2760754SSatish Balay } 437c2760754SSatish Balay } 438187ce0cbSSatish Balay #endif 439c2760754SSatish Balay /* A HASH table entry is found, so insert the values at the correct address */ 440c2760754SSatish Balay if (addv == ADD_VALUES) *(HD[idx]+ (col % bs)*bs + (row % bs)) += value; 441c2760754SSatish Balay else *(HD[idx]+ (col % bs)*bs + (row % bs)) = value; 4420bdbc534SSatish Balay } 4430bdbc534SSatish Balay } else { 4440bdbc534SSatish Balay if (!baij->donotstash) { 445ff2fd236SBarry Smith if (roworiented) { 446b400d20cSBarry Smith ierr = MatStashValuesRow_Private(&mat->stash,im[i],n,in,v+i*n,PETSC_FALSE);CHKERRQ(ierr); 447ff2fd236SBarry Smith } else { 448b400d20cSBarry Smith ierr = MatStashValuesCol_Private(&mat->stash,im[i],n,in,v+i,m,PETSC_FALSE);CHKERRQ(ierr); 4490bdbc534SSatish Balay } 4500bdbc534SSatish Balay } 4510bdbc534SSatish Balay } 4520bdbc534SSatish Balay } 4532515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 454187ce0cbSSatish Balay baij->ht_total_ct = total_ct; 455187ce0cbSSatish Balay baij->ht_insert_ct = insert_ct; 456187ce0cbSSatish Balay #endif 4570bdbc534SSatish Balay PetscFunctionReturn(0); 4580bdbc534SSatish Balay } 4590bdbc534SSatish Balay 4604a2ae208SSatish Balay #undef __FUNCT__ 46197e5c40aSBarry Smith #define __FUNCT__ "MatSetValuesBlocked_MPIBAIJ_HT" 46297e5c40aSBarry Smith PetscErrorCode MatSetValuesBlocked_MPIBAIJ_HT(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv) 4630bdbc534SSatish Balay { 4640bdbc534SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 465273d9f13SBarry Smith PetscTruth roworiented = baij->roworiented; 466dfbe8321SBarry Smith PetscErrorCode ierr; 467b24ad042SBarry Smith PetscInt i,j,ii,jj,row,col; 468899cda47SBarry Smith PetscInt rstart=baij->rstartbs; 469d0f46423SBarry Smith PetscInt rend=mat->rmap->rend,stepval,bs=mat->rmap->bs,bs2=baij->bs2,nbs2=n*bs2; 470b24ad042SBarry Smith PetscInt h1,key,size=baij->ht_size,idx,*HT=baij->ht,Nbs=baij->Nbs; 471329f5518SBarry Smith PetscReal tmp; 4723eda8832SBarry Smith MatScalar **HD = baij->hd,*baij_a; 473dd6ea824SBarry Smith const PetscScalar *v_t,*value; 4742515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 475b24ad042SBarry Smith PetscInt total_ct=baij->ht_total_ct,insert_ct=baij->ht_insert_ct; 4764a15367fSSatish Balay #endif 4770bdbc534SSatish Balay 478d0a41580SSatish Balay PetscFunctionBegin; 479d0a41580SSatish Balay 4800bdbc534SSatish Balay if (roworiented) { 4810bdbc534SSatish Balay stepval = (n-1)*bs; 4820bdbc534SSatish Balay } else { 4830bdbc534SSatish Balay stepval = (m-1)*bs; 4840bdbc534SSatish Balay } 4850bdbc534SSatish Balay for (i=0; i<m; i++) { 4862515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 48777431f27SBarry Smith if (im[i] < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %D",im[i]); 48877431f27SBarry Smith if (im[i] >= baij->Mbs) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],baij->Mbs-1); 4890bdbc534SSatish Balay #endif 4900bdbc534SSatish Balay row = im[i]; 491ab715e2cSSatish Balay v_t = v + i*nbs2; 492c2760754SSatish Balay if (row >= rstart && row < rend) { 4930bdbc534SSatish Balay for (j=0; j<n; j++) { 4940bdbc534SSatish Balay col = in[j]; 4950bdbc534SSatish Balay 4960bdbc534SSatish Balay /* Look up into the Hash Table */ 497c2760754SSatish Balay key = row*Nbs+col+1; 498c2760754SSatish Balay h1 = HASH(size,key,tmp); 4990bdbc534SSatish Balay 500c2760754SSatish Balay idx = h1; 5012515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 502187ce0cbSSatish Balay total_ct++; 503187ce0cbSSatish Balay insert_ct++; 504187ce0cbSSatish Balay if (HT[idx] != key) { 505187ce0cbSSatish Balay for (idx=h1; (idx<size) && (HT[idx]!=key); idx++,total_ct++); 506187ce0cbSSatish Balay if (idx == size) { 507187ce0cbSSatish Balay for (idx=0; (idx<h1) && (HT[idx]!=key); idx++,total_ct++); 508187ce0cbSSatish Balay if (idx == h1) { 50977431f27SBarry Smith SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"(%D,%D) has no entry in the hash table", row, col); 510187ce0cbSSatish Balay } 511187ce0cbSSatish Balay } 512187ce0cbSSatish Balay } 513187ce0cbSSatish Balay #else 514c2760754SSatish Balay if (HT[idx] != key) { 515c2760754SSatish Balay for (idx=h1; (idx<size) && (HT[idx]!=key); idx++); 516c2760754SSatish Balay if (idx == size) { 517c2760754SSatish Balay for (idx=0; (idx<h1) && (HT[idx]!=key); idx++); 518c2760754SSatish Balay if (idx == h1) { 51977431f27SBarry Smith SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"(%D,%D) has no entry in the hash table", row, col); 520c2760754SSatish Balay } 521c2760754SSatish Balay } 522c2760754SSatish Balay } 523187ce0cbSSatish Balay #endif 524c2760754SSatish Balay baij_a = HD[idx]; 5250bdbc534SSatish Balay if (roworiented) { 526c2760754SSatish Balay /*value = v + i*(stepval+bs)*bs + j*bs;*/ 527187ce0cbSSatish Balay /* value = v + (i*(stepval+bs)+j)*bs; */ 528187ce0cbSSatish Balay value = v_t; 529187ce0cbSSatish Balay v_t += bs; 530fef45726SSatish Balay if (addv == ADD_VALUES) { 531c2760754SSatish Balay for (ii=0; ii<bs; ii++,value+=stepval) { 532c2760754SSatish Balay for (jj=ii; jj<bs2; jj+=bs) { 533fef45726SSatish Balay baij_a[jj] += *value++; 534b4cc0f5aSSatish Balay } 535b4cc0f5aSSatish Balay } 536fef45726SSatish Balay } else { 537c2760754SSatish Balay for (ii=0; ii<bs; ii++,value+=stepval) { 538c2760754SSatish Balay for (jj=ii; jj<bs2; jj+=bs) { 539fef45726SSatish Balay baij_a[jj] = *value++; 540fef45726SSatish Balay } 541fef45726SSatish Balay } 542fef45726SSatish Balay } 5430bdbc534SSatish Balay } else { 5440bdbc534SSatish Balay value = v + j*(stepval+bs)*bs + i*bs; 545fef45726SSatish Balay if (addv == ADD_VALUES) { 546b4cc0f5aSSatish Balay for (ii=0; ii<bs; ii++,value+=stepval,baij_a+=bs) { 5470bdbc534SSatish Balay for (jj=0; jj<bs; jj++) { 548fef45726SSatish Balay baij_a[jj] += *value++; 549fef45726SSatish Balay } 550fef45726SSatish Balay } 551fef45726SSatish Balay } else { 552fef45726SSatish Balay for (ii=0; ii<bs; ii++,value+=stepval,baij_a+=bs) { 553fef45726SSatish Balay for (jj=0; jj<bs; jj++) { 554fef45726SSatish Balay baij_a[jj] = *value++; 555fef45726SSatish Balay } 556b4cc0f5aSSatish Balay } 5570bdbc534SSatish Balay } 5580bdbc534SSatish Balay } 5590bdbc534SSatish Balay } 5600bdbc534SSatish Balay } else { 5610bdbc534SSatish Balay if (!baij->donotstash) { 5620bdbc534SSatish Balay if (roworiented) { 5638798bf22SSatish Balay ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 5640bdbc534SSatish Balay } else { 5658798bf22SSatish Balay ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 5660bdbc534SSatish Balay } 5670bdbc534SSatish Balay } 5680bdbc534SSatish Balay } 5690bdbc534SSatish Balay } 5702515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 571187ce0cbSSatish Balay baij->ht_total_ct = total_ct; 572187ce0cbSSatish Balay baij->ht_insert_ct = insert_ct; 573187ce0cbSSatish Balay #endif 5740bdbc534SSatish Balay PetscFunctionReturn(0); 5750bdbc534SSatish Balay } 576133cdb44SSatish Balay 5774a2ae208SSatish Balay #undef __FUNCT__ 5784a2ae208SSatish Balay #define __FUNCT__ "MatGetValues_MPIBAIJ" 579b24ad042SBarry Smith PetscErrorCode MatGetValues_MPIBAIJ(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[]) 580d6de1c52SSatish Balay { 581d6de1c52SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 5826849ba73SBarry Smith PetscErrorCode ierr; 583d0f46423SBarry Smith PetscInt bs=mat->rmap->bs,i,j,bsrstart = mat->rmap->rstart,bsrend = mat->rmap->rend; 584d0f46423SBarry Smith PetscInt bscstart = mat->cmap->rstart,bscend = mat->cmap->rend,row,col,data; 585d6de1c52SSatish Balay 586133cdb44SSatish Balay PetscFunctionBegin; 587d6de1c52SSatish Balay for (i=0; i<m; i++) { 58897e567efSBarry Smith if (idxm[i] < 0) continue; /* SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %D",idxm[i]);*/ 589d0f46423SBarry Smith if (idxm[i] >= mat->rmap->N) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",idxm[i],mat->rmap->N-1); 590d6de1c52SSatish Balay if (idxm[i] >= bsrstart && idxm[i] < bsrend) { 591d6de1c52SSatish Balay row = idxm[i] - bsrstart; 592d6de1c52SSatish Balay for (j=0; j<n; j++) { 59397e567efSBarry Smith if (idxn[j] < 0) continue; /* SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Negative column: %D",idxn[j]); */ 594d0f46423SBarry Smith if (idxn[j] >= mat->cmap->N) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",idxn[j],mat->cmap->N-1); 595d6de1c52SSatish Balay if (idxn[j] >= bscstart && idxn[j] < bscend){ 596d6de1c52SSatish Balay col = idxn[j] - bscstart; 59798dd23e9SBarry Smith ierr = MatGetValues_SeqBAIJ(baij->A,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr); 598d64ed03dSBarry Smith } else { 599905e6a2fSBarry Smith if (!baij->colmap) { 600905e6a2fSBarry Smith ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 601905e6a2fSBarry Smith } 602aa482453SBarry Smith #if defined (PETSC_USE_CTABLE) 6030f5bd95cSBarry Smith ierr = PetscTableFind(baij->colmap,idxn[j]/bs+1,&data);CHKERRQ(ierr); 604fa46199cSSatish Balay data --; 60548e59246SSatish Balay #else 60648e59246SSatish Balay data = baij->colmap[idxn[j]/bs]-1; 60748e59246SSatish Balay #endif 60848e59246SSatish Balay if((data < 0) || (baij->garray[data/bs] != idxn[j]/bs)) *(v+i*n+j) = 0.0; 609d9d09a02SSatish Balay else { 61048e59246SSatish Balay col = data + idxn[j]%bs; 61198dd23e9SBarry Smith ierr = MatGetValues_SeqBAIJ(baij->B,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr); 612d6de1c52SSatish Balay } 613d6de1c52SSatish Balay } 614d6de1c52SSatish Balay } 615d64ed03dSBarry Smith } else { 61629bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"Only local values currently supported"); 617d6de1c52SSatish Balay } 618d6de1c52SSatish Balay } 6193a40ed3dSBarry Smith PetscFunctionReturn(0); 620d6de1c52SSatish Balay } 621d6de1c52SSatish Balay 6224a2ae208SSatish Balay #undef __FUNCT__ 6234a2ae208SSatish Balay #define __FUNCT__ "MatNorm_MPIBAIJ" 624dfbe8321SBarry Smith PetscErrorCode MatNorm_MPIBAIJ(Mat mat,NormType type,PetscReal *nrm) 625d6de1c52SSatish Balay { 626d6de1c52SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 627d6de1c52SSatish Balay Mat_SeqBAIJ *amat = (Mat_SeqBAIJ*)baij->A->data,*bmat = (Mat_SeqBAIJ*)baij->B->data; 628dfbe8321SBarry Smith PetscErrorCode ierr; 629d0f46423SBarry Smith PetscInt i,j,bs2=baij->bs2,bs=baij->A->rmap->bs,nz,row,col; 630329f5518SBarry Smith PetscReal sum = 0.0; 6313eda8832SBarry Smith MatScalar *v; 632d6de1c52SSatish Balay 633d64ed03dSBarry Smith PetscFunctionBegin; 634d6de1c52SSatish Balay if (baij->size == 1) { 635064f8208SBarry Smith ierr = MatNorm(baij->A,type,nrm);CHKERRQ(ierr); 636d6de1c52SSatish Balay } else { 637d6de1c52SSatish Balay if (type == NORM_FROBENIUS) { 638d6de1c52SSatish Balay v = amat->a; 6398a62d963SHong Zhang nz = amat->nz*bs2; 6408a62d963SHong Zhang for (i=0; i<nz; i++) { 641aa482453SBarry Smith #if defined(PETSC_USE_COMPLEX) 642329f5518SBarry Smith sum += PetscRealPart(PetscConj(*v)*(*v)); v++; 643d6de1c52SSatish Balay #else 644d6de1c52SSatish Balay sum += (*v)*(*v); v++; 645d6de1c52SSatish Balay #endif 646d6de1c52SSatish Balay } 647d6de1c52SSatish Balay v = bmat->a; 6488a62d963SHong Zhang nz = bmat->nz*bs2; 6498a62d963SHong Zhang for (i=0; i<nz; i++) { 650aa482453SBarry Smith #if defined(PETSC_USE_COMPLEX) 651329f5518SBarry Smith sum += PetscRealPart(PetscConj(*v)*(*v)); v++; 652d6de1c52SSatish Balay #else 653d6de1c52SSatish Balay sum += (*v)*(*v); v++; 654d6de1c52SSatish Balay #endif 655d6de1c52SSatish Balay } 6567adad957SLisandro Dalcin ierr = MPI_Allreduce(&sum,nrm,1,MPIU_REAL,MPI_SUM,((PetscObject)mat)->comm);CHKERRQ(ierr); 657064f8208SBarry Smith *nrm = sqrt(*nrm); 6588a62d963SHong Zhang } else if (type == NORM_1) { /* max column sum */ 6598a62d963SHong Zhang PetscReal *tmp,*tmp2; 660899cda47SBarry Smith PetscInt *jj,*garray=baij->garray,cstart=baij->rstartbs; 661d0f46423SBarry Smith ierr = PetscMalloc((2*mat->cmap->N+1)*sizeof(PetscReal),&tmp);CHKERRQ(ierr); 662d0f46423SBarry Smith tmp2 = tmp + mat->cmap->N; 663d0f46423SBarry Smith ierr = PetscMemzero(tmp,mat->cmap->N*sizeof(PetscReal));CHKERRQ(ierr); 6648a62d963SHong Zhang v = amat->a; jj = amat->j; 6658a62d963SHong Zhang for (i=0; i<amat->nz; i++) { 6668a62d963SHong Zhang for (j=0; j<bs; j++){ 6678a62d963SHong Zhang col = bs*(cstart + *jj) + j; /* column index */ 6688a62d963SHong Zhang for (row=0; row<bs; row++){ 6698a62d963SHong Zhang tmp[col] += PetscAbsScalar(*v); v++; 6708a62d963SHong Zhang } 6718a62d963SHong Zhang } 6728a62d963SHong Zhang jj++; 6738a62d963SHong Zhang } 6748a62d963SHong Zhang v = bmat->a; jj = bmat->j; 6758a62d963SHong Zhang for (i=0; i<bmat->nz; i++) { 6768a62d963SHong Zhang for (j=0; j<bs; j++){ 6778a62d963SHong Zhang col = bs*garray[*jj] + j; 6788a62d963SHong Zhang for (row=0; row<bs; row++){ 6798a62d963SHong Zhang tmp[col] += PetscAbsScalar(*v); v++; 6808a62d963SHong Zhang } 6818a62d963SHong Zhang } 6828a62d963SHong Zhang jj++; 6838a62d963SHong Zhang } 684d0f46423SBarry Smith ierr = MPI_Allreduce(tmp,tmp2,mat->cmap->N,MPIU_REAL,MPI_SUM,((PetscObject)mat)->comm);CHKERRQ(ierr); 6858a62d963SHong Zhang *nrm = 0.0; 686d0f46423SBarry Smith for (j=0; j<mat->cmap->N; j++) { 6878a62d963SHong Zhang if (tmp2[j] > *nrm) *nrm = tmp2[j]; 6888a62d963SHong Zhang } 6898a62d963SHong Zhang ierr = PetscFree(tmp);CHKERRQ(ierr); 6908a62d963SHong Zhang } else if (type == NORM_INFINITY) { /* max row sum */ 691577dd1f9SKris Buschelman PetscReal *sums; 692577dd1f9SKris Buschelman ierr = PetscMalloc(bs*sizeof(PetscReal),&sums);CHKERRQ(ierr) 6938a62d963SHong Zhang sum = 0.0; 6948a62d963SHong Zhang for (j=0; j<amat->mbs; j++) { 6958a62d963SHong Zhang for (row=0; row<bs; row++) sums[row] = 0.0; 6968a62d963SHong Zhang v = amat->a + bs2*amat->i[j]; 6978a62d963SHong Zhang nz = amat->i[j+1]-amat->i[j]; 6988a62d963SHong Zhang for (i=0; i<nz; i++) { 6998a62d963SHong Zhang for (col=0; col<bs; col++){ 7008a62d963SHong Zhang for (row=0; row<bs; row++){ 7018a62d963SHong Zhang sums[row] += PetscAbsScalar(*v); v++; 7028a62d963SHong Zhang } 7038a62d963SHong Zhang } 7048a62d963SHong Zhang } 7058a62d963SHong Zhang v = bmat->a + bs2*bmat->i[j]; 7068a62d963SHong Zhang nz = bmat->i[j+1]-bmat->i[j]; 7078a62d963SHong Zhang for (i=0; i<nz; i++) { 7088a62d963SHong Zhang for (col=0; col<bs; col++){ 7098a62d963SHong Zhang for (row=0; row<bs; row++){ 7108a62d963SHong Zhang sums[row] += PetscAbsScalar(*v); v++; 7118a62d963SHong Zhang } 7128a62d963SHong Zhang } 7138a62d963SHong Zhang } 7148a62d963SHong Zhang for (row=0; row<bs; row++){ 7158a62d963SHong Zhang if (sums[row] > sum) sum = sums[row]; 7168a62d963SHong Zhang } 7178a62d963SHong Zhang } 7187adad957SLisandro Dalcin ierr = MPI_Allreduce(&sum,nrm,1,MPIU_REAL,MPI_MAX,((PetscObject)mat)->comm);CHKERRQ(ierr); 719577dd1f9SKris Buschelman ierr = PetscFree(sums);CHKERRQ(ierr); 720d64ed03dSBarry Smith } else { 72129bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"No support for this norm yet"); 722d6de1c52SSatish Balay } 723d64ed03dSBarry Smith } 7243a40ed3dSBarry Smith PetscFunctionReturn(0); 725d6de1c52SSatish Balay } 72657b952d6SSatish Balay 727fef45726SSatish Balay /* 728fef45726SSatish Balay Creates the hash table, and sets the table 729fef45726SSatish Balay This table is created only once. 730fef45726SSatish Balay If new entried need to be added to the matrix 731fef45726SSatish Balay then the hash table has to be destroyed and 732fef45726SSatish Balay recreated. 733fef45726SSatish Balay */ 7344a2ae208SSatish Balay #undef __FUNCT__ 7354a2ae208SSatish Balay #define __FUNCT__ "MatCreateHashTable_MPIBAIJ_Private" 736dfbe8321SBarry Smith PetscErrorCode MatCreateHashTable_MPIBAIJ_Private(Mat mat,PetscReal factor) 737596b8d2eSBarry Smith { 738596b8d2eSBarry Smith Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 739596b8d2eSBarry Smith Mat A = baij->A,B=baij->B; 740596b8d2eSBarry Smith Mat_SeqBAIJ *a=(Mat_SeqBAIJ *)A->data,*b=(Mat_SeqBAIJ *)B->data; 741b24ad042SBarry Smith PetscInt i,j,k,nz=a->nz+b->nz,h1,*ai=a->i,*aj=a->j,*bi=b->i,*bj=b->j; 7426849ba73SBarry Smith PetscErrorCode ierr; 743899cda47SBarry Smith PetscInt size,bs2=baij->bs2,rstart=baij->rstartbs; 744899cda47SBarry Smith PetscInt cstart=baij->cstartbs,*garray=baij->garray,row,col,Nbs=baij->Nbs; 745b24ad042SBarry Smith PetscInt *HT,key; 7463eda8832SBarry Smith MatScalar **HD; 747329f5518SBarry Smith PetscReal tmp; 7486cf91177SBarry Smith #if defined(PETSC_USE_INFO) 749b24ad042SBarry Smith PetscInt ct=0,max=0; 7504a15367fSSatish Balay #endif 751fef45726SSatish Balay 752d64ed03dSBarry Smith PetscFunctionBegin; 753b24ad042SBarry Smith baij->ht_size=(PetscInt)(factor*nz); 7540bdbc534SSatish Balay size = baij->ht_size; 755fef45726SSatish Balay 7560bdbc534SSatish Balay if (baij->ht) { 7570bdbc534SSatish Balay PetscFunctionReturn(0); 758596b8d2eSBarry Smith } 7590bdbc534SSatish Balay 760fef45726SSatish Balay /* Allocate Memory for Hash Table */ 761b24ad042SBarry Smith ierr = PetscMalloc((size)*(sizeof(PetscInt)+sizeof(MatScalar*))+1,&baij->hd);CHKERRQ(ierr); 762b24ad042SBarry Smith baij->ht = (PetscInt*)(baij->hd + size); 763b9e4cc15SSatish Balay HD = baij->hd; 764a07cd24cSSatish Balay HT = baij->ht; 765b9e4cc15SSatish Balay 766b9e4cc15SSatish Balay 767b24ad042SBarry Smith ierr = PetscMemzero(HD,size*(sizeof(PetscInt)+sizeof(PetscScalar*)));CHKERRQ(ierr); 7680bdbc534SSatish Balay 769596b8d2eSBarry Smith 770596b8d2eSBarry Smith /* Loop Over A */ 7710bdbc534SSatish Balay for (i=0; i<a->mbs; i++) { 772596b8d2eSBarry Smith for (j=ai[i]; j<ai[i+1]; j++) { 7730bdbc534SSatish Balay row = i+rstart; 7740bdbc534SSatish Balay col = aj[j]+cstart; 775596b8d2eSBarry Smith 776187ce0cbSSatish Balay key = row*Nbs + col + 1; 777c2760754SSatish Balay h1 = HASH(size,key,tmp); 7780bdbc534SSatish Balay for (k=0; k<size; k++){ 779958c9bccSBarry Smith if (!HT[(h1+k)%size]) { 7800bdbc534SSatish Balay HT[(h1+k)%size] = key; 7810bdbc534SSatish Balay HD[(h1+k)%size] = a->a + j*bs2; 782596b8d2eSBarry Smith break; 7836cf91177SBarry Smith #if defined(PETSC_USE_INFO) 784187ce0cbSSatish Balay } else { 785187ce0cbSSatish Balay ct++; 786187ce0cbSSatish Balay #endif 787596b8d2eSBarry Smith } 788187ce0cbSSatish Balay } 7896cf91177SBarry Smith #if defined(PETSC_USE_INFO) 790187ce0cbSSatish Balay if (k> max) max = k; 791187ce0cbSSatish Balay #endif 792596b8d2eSBarry Smith } 793596b8d2eSBarry Smith } 794596b8d2eSBarry Smith /* Loop Over B */ 7950bdbc534SSatish Balay for (i=0; i<b->mbs; i++) { 796596b8d2eSBarry Smith for (j=bi[i]; j<bi[i+1]; j++) { 7970bdbc534SSatish Balay row = i+rstart; 7980bdbc534SSatish Balay col = garray[bj[j]]; 799187ce0cbSSatish Balay key = row*Nbs + col + 1; 800c2760754SSatish Balay h1 = HASH(size,key,tmp); 8010bdbc534SSatish Balay for (k=0; k<size; k++){ 802958c9bccSBarry Smith if (!HT[(h1+k)%size]) { 8030bdbc534SSatish Balay HT[(h1+k)%size] = key; 8040bdbc534SSatish Balay HD[(h1+k)%size] = b->a + j*bs2; 805596b8d2eSBarry Smith break; 8066cf91177SBarry Smith #if defined(PETSC_USE_INFO) 807187ce0cbSSatish Balay } else { 808187ce0cbSSatish Balay ct++; 809187ce0cbSSatish Balay #endif 810596b8d2eSBarry Smith } 811187ce0cbSSatish Balay } 8126cf91177SBarry Smith #if defined(PETSC_USE_INFO) 813187ce0cbSSatish Balay if (k> max) max = k; 814187ce0cbSSatish Balay #endif 815596b8d2eSBarry Smith } 816596b8d2eSBarry Smith } 817596b8d2eSBarry Smith 818596b8d2eSBarry Smith /* Print Summary */ 8196cf91177SBarry Smith #if defined(PETSC_USE_INFO) 820c38d4ed2SBarry Smith for (i=0,j=0; i<size; i++) { 821596b8d2eSBarry Smith if (HT[i]) {j++;} 822c38d4ed2SBarry Smith } 8231e2582c4SBarry Smith ierr = PetscInfo2(mat,"Average Search = %5.2f,max search = %D\n",(!j)? 0.0:((PetscReal)(ct+j))/j,max);CHKERRQ(ierr); 824187ce0cbSSatish Balay #endif 8253a40ed3dSBarry Smith PetscFunctionReturn(0); 826596b8d2eSBarry Smith } 82757b952d6SSatish Balay 8284a2ae208SSatish Balay #undef __FUNCT__ 8294a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyBegin_MPIBAIJ" 830dfbe8321SBarry Smith PetscErrorCode MatAssemblyBegin_MPIBAIJ(Mat mat,MatAssemblyType mode) 831bbb85fb3SSatish Balay { 832bbb85fb3SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 833dfbe8321SBarry Smith PetscErrorCode ierr; 834b24ad042SBarry Smith PetscInt nstash,reallocs; 835bbb85fb3SSatish Balay InsertMode addv; 836bbb85fb3SSatish Balay 837bbb85fb3SSatish Balay PetscFunctionBegin; 838bbb85fb3SSatish Balay if (baij->donotstash) { 839bbb85fb3SSatish Balay PetscFunctionReturn(0); 840bbb85fb3SSatish Balay } 841bbb85fb3SSatish Balay 842bbb85fb3SSatish Balay /* make sure all processors are either in INSERTMODE or ADDMODE */ 8437adad957SLisandro Dalcin ierr = MPI_Allreduce(&mat->insertmode,&addv,1,MPI_INT,MPI_BOR,((PetscObject)mat)->comm);CHKERRQ(ierr); 844bbb85fb3SSatish Balay if (addv == (ADD_VALUES|INSERT_VALUES)) { 84529bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Some processors inserted others added"); 846bbb85fb3SSatish Balay } 847bbb85fb3SSatish Balay mat->insertmode = addv; /* in case this processor had no cache */ 848bbb85fb3SSatish Balay 849d0f46423SBarry Smith ierr = MatStashScatterBegin_Private(mat,&mat->stash,mat->rmap->range);CHKERRQ(ierr); 8501e2582c4SBarry Smith ierr = MatStashScatterBegin_Private(mat,&mat->bstash,baij->rangebs);CHKERRQ(ierr); 8518798bf22SSatish Balay ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr); 8521e2582c4SBarry Smith ierr = PetscInfo2(mat,"Stash has %D entries,uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr); 85346680499SSatish Balay ierr = MatStashGetInfo_Private(&mat->bstash,&nstash,&reallocs);CHKERRQ(ierr); 8541e2582c4SBarry Smith ierr = PetscInfo2(mat,"Block-Stash has %D entries, uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr); 855bbb85fb3SSatish Balay PetscFunctionReturn(0); 856bbb85fb3SSatish Balay } 857bbb85fb3SSatish Balay 8584a2ae208SSatish Balay #undef __FUNCT__ 8594a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyEnd_MPIBAIJ" 860dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_MPIBAIJ(Mat mat,MatAssemblyType mode) 861bbb85fb3SSatish Balay { 862bbb85fb3SSatish Balay Mat_MPIBAIJ *baij=(Mat_MPIBAIJ*)mat->data; 86391c97fd4SSatish Balay Mat_SeqBAIJ *a=(Mat_SeqBAIJ*)baij->A->data; 8646849ba73SBarry Smith PetscErrorCode ierr; 865b24ad042SBarry Smith PetscInt i,j,rstart,ncols,flg,bs2=baij->bs2; 866e44c0bd4SBarry Smith PetscInt *row,*col; 867e44c0bd4SBarry Smith PetscTruth r1,r2,r3,other_disassembled; 8683eda8832SBarry Smith MatScalar *val; 869bbb85fb3SSatish Balay InsertMode addv = mat->insertmode; 870b24ad042SBarry Smith PetscMPIInt n; 871bbb85fb3SSatish Balay 87291c97fd4SSatish Balay /* do not use 'b=(Mat_SeqBAIJ*)baij->B->data' as B can be reset in disassembly */ 873bbb85fb3SSatish Balay PetscFunctionBegin; 874bbb85fb3SSatish Balay if (!baij->donotstash) { 875a2d1c673SSatish Balay while (1) { 8768798bf22SSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 877a2d1c673SSatish Balay if (!flg) break; 878a2d1c673SSatish Balay 879bbb85fb3SSatish Balay for (i=0; i<n;) { 880bbb85fb3SSatish Balay /* Now identify the consecutive vals belonging to the same row */ 881bbb85fb3SSatish Balay for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; } 882bbb85fb3SSatish Balay if (j < n) ncols = j-i; 883bbb85fb3SSatish Balay else ncols = n-i; 884bbb85fb3SSatish Balay /* Now assemble all these values with a single function call */ 88597e5c40aSBarry Smith ierr = MatSetValues_MPIBAIJ(mat,1,row+i,ncols,col+i,val+i,addv);CHKERRQ(ierr); 886bbb85fb3SSatish Balay i = j; 887bbb85fb3SSatish Balay } 888bbb85fb3SSatish Balay } 8898798bf22SSatish Balay ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr); 890a2d1c673SSatish Balay /* Now process the block-stash. Since the values are stashed column-oriented, 891a2d1c673SSatish Balay set the roworiented flag to column oriented, and after MatSetValues() 892a2d1c673SSatish Balay restore the original flags */ 893a2d1c673SSatish Balay r1 = baij->roworiented; 894a2d1c673SSatish Balay r2 = a->roworiented; 89591c97fd4SSatish Balay r3 = ((Mat_SeqBAIJ*)baij->B->data)->roworiented; 8967c922b88SBarry Smith baij->roworiented = PETSC_FALSE; 8977c922b88SBarry Smith a->roworiented = PETSC_FALSE; 89891c97fd4SSatish Balay (((Mat_SeqBAIJ*)baij->B->data))->roworiented = PETSC_FALSE; /* b->roworiented */ 899a2d1c673SSatish Balay while (1) { 9008798bf22SSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->bstash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 901a2d1c673SSatish Balay if (!flg) break; 902a2d1c673SSatish Balay 903a2d1c673SSatish Balay for (i=0; i<n;) { 904a2d1c673SSatish Balay /* Now identify the consecutive vals belonging to the same row */ 905a2d1c673SSatish Balay for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; } 906a2d1c673SSatish Balay if (j < n) ncols = j-i; 907a2d1c673SSatish Balay else ncols = n-i; 90897e5c40aSBarry Smith ierr = MatSetValuesBlocked_MPIBAIJ(mat,1,row+i,ncols,col+i,val+i*bs2,addv);CHKERRQ(ierr); 909a2d1c673SSatish Balay i = j; 910a2d1c673SSatish Balay } 911a2d1c673SSatish Balay } 9128798bf22SSatish Balay ierr = MatStashScatterEnd_Private(&mat->bstash);CHKERRQ(ierr); 913a2d1c673SSatish Balay baij->roworiented = r1; 914a2d1c673SSatish Balay a->roworiented = r2; 91591c97fd4SSatish Balay ((Mat_SeqBAIJ*)baij->B->data)->roworiented = r3; /* b->roworiented */ 916bbb85fb3SSatish Balay } 917bbb85fb3SSatish Balay 918bbb85fb3SSatish Balay ierr = MatAssemblyBegin(baij->A,mode);CHKERRQ(ierr); 919bbb85fb3SSatish Balay ierr = MatAssemblyEnd(baij->A,mode);CHKERRQ(ierr); 920bbb85fb3SSatish Balay 921bbb85fb3SSatish Balay /* determine if any processor has disassembled, if so we must 922bbb85fb3SSatish Balay also disassemble ourselfs, in order that we may reassemble. */ 923bbb85fb3SSatish Balay /* 924bbb85fb3SSatish Balay if nonzero structure of submatrix B cannot change then we know that 925bbb85fb3SSatish Balay no processor disassembled thus we can skip this stuff 926bbb85fb3SSatish Balay */ 927bbb85fb3SSatish Balay if (!((Mat_SeqBAIJ*)baij->B->data)->nonew) { 9287adad957SLisandro Dalcin ierr = MPI_Allreduce(&mat->was_assembled,&other_disassembled,1,MPI_INT,MPI_PROD,((PetscObject)mat)->comm);CHKERRQ(ierr); 929bbb85fb3SSatish Balay if (mat->was_assembled && !other_disassembled) { 930bbb85fb3SSatish Balay ierr = DisAssemble_MPIBAIJ(mat);CHKERRQ(ierr); 931bbb85fb3SSatish Balay } 932bbb85fb3SSatish Balay } 933bbb85fb3SSatish Balay 934bbb85fb3SSatish Balay if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) { 935bbb85fb3SSatish Balay ierr = MatSetUpMultiply_MPIBAIJ(mat);CHKERRQ(ierr); 936bbb85fb3SSatish Balay } 93791c97fd4SSatish Balay ((Mat_SeqBAIJ*)baij->B->data)->compressedrow.use = PETSC_TRUE; /* b->compressedrow.use */ 938bbb85fb3SSatish Balay ierr = MatAssemblyBegin(baij->B,mode);CHKERRQ(ierr); 939bbb85fb3SSatish Balay ierr = MatAssemblyEnd(baij->B,mode);CHKERRQ(ierr); 940bbb85fb3SSatish Balay 9416cf91177SBarry Smith #if defined(PETSC_USE_INFO) 942bbb85fb3SSatish Balay if (baij->ht && mode== MAT_FINAL_ASSEMBLY) { 9431e2582c4SBarry Smith ierr = PetscInfo1(mat,"Average Hash Table Search in MatSetValues = %5.2f\n",((PetscReal)baij->ht_total_ct)/baij->ht_insert_ct);CHKERRQ(ierr); 944bbb85fb3SSatish Balay baij->ht_total_ct = 0; 945bbb85fb3SSatish Balay baij->ht_insert_ct = 0; 946bbb85fb3SSatish Balay } 947bbb85fb3SSatish Balay #endif 948bbb85fb3SSatish Balay if (baij->ht_flag && !baij->ht && mode == MAT_FINAL_ASSEMBLY) { 949bbb85fb3SSatish Balay ierr = MatCreateHashTable_MPIBAIJ_Private(mat,baij->ht_fact);CHKERRQ(ierr); 950bbb85fb3SSatish Balay mat->ops->setvalues = MatSetValues_MPIBAIJ_HT; 951bbb85fb3SSatish Balay mat->ops->setvaluesblocked = MatSetValuesBlocked_MPIBAIJ_HT; 952bbb85fb3SSatish Balay } 953bbb85fb3SSatish Balay 954606d414cSSatish Balay ierr = PetscFree(baij->rowvalues);CHKERRQ(ierr); 955606d414cSSatish Balay baij->rowvalues = 0; 956bbb85fb3SSatish Balay PetscFunctionReturn(0); 957bbb85fb3SSatish Balay } 95857b952d6SSatish Balay 9594a2ae208SSatish Balay #undef __FUNCT__ 9604a2ae208SSatish Balay #define __FUNCT__ "MatView_MPIBAIJ_ASCIIorDraworSocket" 9616849ba73SBarry Smith static PetscErrorCode MatView_MPIBAIJ_ASCIIorDraworSocket(Mat mat,PetscViewer viewer) 96257b952d6SSatish Balay { 96357b952d6SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 964dfbe8321SBarry Smith PetscErrorCode ierr; 965b24ad042SBarry Smith PetscMPIInt size = baij->size,rank = baij->rank; 966d0f46423SBarry Smith PetscInt bs = mat->rmap->bs; 96732077d6dSBarry Smith PetscTruth iascii,isdraw; 968b0a32e0cSBarry Smith PetscViewer sviewer; 969f3ef73ceSBarry Smith PetscViewerFormat format; 97057b952d6SSatish Balay 971d64ed03dSBarry Smith PetscFunctionBegin; 97232077d6dSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&iascii);CHKERRQ(ierr); 973fb9695e5SSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr); 97432077d6dSBarry Smith if (iascii) { 975b0a32e0cSBarry Smith ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr); 976456192e2SBarry Smith if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 9774e220ebcSLois Curfman McInnes MatInfo info; 9787adad957SLisandro Dalcin ierr = MPI_Comm_rank(((PetscObject)mat)->comm,&rank);CHKERRQ(ierr); 979d41123aaSBarry Smith ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr); 98077431f27SBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Local rows %D nz %D nz alloced %D bs %D mem %D\n", 981d0f46423SBarry Smith rank,mat->rmap->N,(PetscInt)info.nz_used*bs,(PetscInt)info.nz_allocated*bs, 982d0f46423SBarry Smith mat->rmap->bs,(PetscInt)info.memory);CHKERRQ(ierr); 983d132466eSBarry Smith ierr = MatGetInfo(baij->A,MAT_LOCAL,&info);CHKERRQ(ierr); 98477431f27SBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] on-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used*bs);CHKERRQ(ierr); 985d132466eSBarry Smith ierr = MatGetInfo(baij->B,MAT_LOCAL,&info);CHKERRQ(ierr); 98677431f27SBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] off-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used*bs);CHKERRQ(ierr); 987b0a32e0cSBarry Smith ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 98807d81ca4SBarry Smith ierr = PetscViewerASCIIPrintf(viewer,"Information on VecScatter used in matrix-vector product: \n");CHKERRQ(ierr); 98957b952d6SSatish Balay ierr = VecScatterView(baij->Mvctx,viewer);CHKERRQ(ierr); 9903a40ed3dSBarry Smith PetscFunctionReturn(0); 991fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_INFO) { 99277431f27SBarry Smith ierr = PetscViewerASCIIPrintf(viewer," block size is %D\n",bs);CHKERRQ(ierr); 9933a40ed3dSBarry Smith PetscFunctionReturn(0); 99404929863SHong Zhang } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) { 99504929863SHong Zhang PetscFunctionReturn(0); 99657b952d6SSatish Balay } 99757b952d6SSatish Balay } 99857b952d6SSatish Balay 9990f5bd95cSBarry Smith if (isdraw) { 1000b0a32e0cSBarry Smith PetscDraw draw; 100157b952d6SSatish Balay PetscTruth isnull; 1002b0a32e0cSBarry Smith ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr); 1003b0a32e0cSBarry Smith ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); if (isnull) PetscFunctionReturn(0); 100457b952d6SSatish Balay } 100557b952d6SSatish Balay 100657b952d6SSatish Balay if (size == 1) { 10077adad957SLisandro Dalcin ierr = PetscObjectSetName((PetscObject)baij->A,((PetscObject)mat)->name);CHKERRQ(ierr); 100857b952d6SSatish Balay ierr = MatView(baij->A,viewer);CHKERRQ(ierr); 1009d64ed03dSBarry Smith } else { 101057b952d6SSatish Balay /* assemble the entire matrix onto first processor. */ 101157b952d6SSatish Balay Mat A; 101257b952d6SSatish Balay Mat_SeqBAIJ *Aloc; 1013d0f46423SBarry Smith PetscInt M = mat->rmap->N,N = mat->cmap->N,*ai,*aj,col,i,j,k,*rvals,mbs = baij->mbs; 10143eda8832SBarry Smith MatScalar *a; 101557b952d6SSatish Balay 1016f204ca49SKris Buschelman /* Here we are creating a temporary matrix, so will assume MPIBAIJ is acceptable */ 1017f204ca49SKris Buschelman /* Perhaps this should be the type of mat? */ 10187adad957SLisandro Dalcin ierr = MatCreate(((PetscObject)mat)->comm,&A);CHKERRQ(ierr); 101957b952d6SSatish Balay if (!rank) { 1020f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,M,N,M,N);CHKERRQ(ierr); 1021d64ed03dSBarry Smith } else { 1022f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,0,0,M,N);CHKERRQ(ierr); 102357b952d6SSatish Balay } 1024f204ca49SKris Buschelman ierr = MatSetType(A,MATMPIBAIJ);CHKERRQ(ierr); 1025d0f46423SBarry Smith ierr = MatMPIBAIJSetPreallocation(A,mat->rmap->bs,0,PETSC_NULL,0,PETSC_NULL);CHKERRQ(ierr); 102652e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,A);CHKERRQ(ierr); 102757b952d6SSatish Balay 102857b952d6SSatish Balay /* copy over the A part */ 102957b952d6SSatish Balay Aloc = (Mat_SeqBAIJ*)baij->A->data; 103057b952d6SSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 1031b24ad042SBarry Smith ierr = PetscMalloc(bs*sizeof(PetscInt),&rvals);CHKERRQ(ierr); 103257b952d6SSatish Balay 103357b952d6SSatish Balay for (i=0; i<mbs; i++) { 1034899cda47SBarry Smith rvals[0] = bs*(baij->rstartbs + i); 103557b952d6SSatish Balay for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; } 103657b952d6SSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 1037899cda47SBarry Smith col = (baij->cstartbs+aj[j])*bs; 103857b952d6SSatish Balay for (k=0; k<bs; k++) { 103997e5c40aSBarry Smith ierr = MatSetValues_MPIBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 1040cee3aa6bSSatish Balay col++; a += bs; 104157b952d6SSatish Balay } 104257b952d6SSatish Balay } 104357b952d6SSatish Balay } 104457b952d6SSatish Balay /* copy over the B part */ 104557b952d6SSatish Balay Aloc = (Mat_SeqBAIJ*)baij->B->data; 104657b952d6SSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 104757b952d6SSatish Balay for (i=0; i<mbs; i++) { 1048899cda47SBarry Smith rvals[0] = bs*(baij->rstartbs + i); 104957b952d6SSatish Balay for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; } 105057b952d6SSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 105157b952d6SSatish Balay col = baij->garray[aj[j]]*bs; 105257b952d6SSatish Balay for (k=0; k<bs; k++) { 105397e5c40aSBarry Smith ierr = MatSetValues_MPIBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 1054cee3aa6bSSatish Balay col++; a += bs; 105557b952d6SSatish Balay } 105657b952d6SSatish Balay } 105757b952d6SSatish Balay } 1058606d414cSSatish Balay ierr = PetscFree(rvals);CHKERRQ(ierr); 10596d4a8577SBarry Smith ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 10606d4a8577SBarry Smith ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 106155843e3eSBarry Smith /* 106255843e3eSBarry Smith Everyone has to call to draw the matrix since the graphics waits are 1063b0a32e0cSBarry Smith synchronized across all processors that share the PetscDraw object 106455843e3eSBarry Smith */ 1065b0a32e0cSBarry Smith ierr = PetscViewerGetSingleton(viewer,&sviewer);CHKERRQ(ierr); 1066f14a1c24SBarry Smith if (!rank) { 10677adad957SLisandro Dalcin ierr = PetscObjectSetName((PetscObject)((Mat_MPIBAIJ*)(A->data))->A,((PetscObject)mat)->name);CHKERRQ(ierr); 10686831982aSBarry Smith ierr = MatView(((Mat_MPIBAIJ*)(A->data))->A,sviewer);CHKERRQ(ierr); 106957b952d6SSatish Balay } 1070b0a32e0cSBarry Smith ierr = PetscViewerRestoreSingleton(viewer,&sviewer);CHKERRQ(ierr); 107157b952d6SSatish Balay ierr = MatDestroy(A);CHKERRQ(ierr); 107257b952d6SSatish Balay } 10733a40ed3dSBarry Smith PetscFunctionReturn(0); 107457b952d6SSatish Balay } 107557b952d6SSatish Balay 10764a2ae208SSatish Balay #undef __FUNCT__ 10774a2ae208SSatish Balay #define __FUNCT__ "MatView_MPIBAIJ" 1078dfbe8321SBarry Smith PetscErrorCode MatView_MPIBAIJ(Mat mat,PetscViewer viewer) 107957b952d6SSatish Balay { 1080dfbe8321SBarry Smith PetscErrorCode ierr; 108132077d6dSBarry Smith PetscTruth iascii,isdraw,issocket,isbinary; 108257b952d6SSatish Balay 1083d64ed03dSBarry Smith PetscFunctionBegin; 108432077d6dSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&iascii);CHKERRQ(ierr); 1085fb9695e5SSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr); 1086b0a32e0cSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_SOCKET,&issocket);CHKERRQ(ierr); 1087fb9695e5SSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_BINARY,&isbinary);CHKERRQ(ierr); 108832077d6dSBarry Smith if (iascii || isdraw || issocket || isbinary) { 10897b2a1423SBarry Smith ierr = MatView_MPIBAIJ_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr); 10905cd90555SBarry Smith } else { 109179a5c55eSBarry Smith SETERRQ1(PETSC_ERR_SUP,"Viewer type %s not supported by MPIBAIJ matrices",((PetscObject)viewer)->type_name); 109257b952d6SSatish Balay } 10933a40ed3dSBarry Smith PetscFunctionReturn(0); 109457b952d6SSatish Balay } 109557b952d6SSatish Balay 10964a2ae208SSatish Balay #undef __FUNCT__ 10974a2ae208SSatish Balay #define __FUNCT__ "MatDestroy_MPIBAIJ" 1098dfbe8321SBarry Smith PetscErrorCode MatDestroy_MPIBAIJ(Mat mat) 109979bdfe76SSatish Balay { 110079bdfe76SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 1101dfbe8321SBarry Smith PetscErrorCode ierr; 110279bdfe76SSatish Balay 1103d64ed03dSBarry Smith PetscFunctionBegin; 1104aa482453SBarry Smith #if defined(PETSC_USE_LOG) 1105d0f46423SBarry Smith PetscLogObjectState((PetscObject)mat,"Rows=%D,Cols=%D",mat->rmap->N,mat->cmap->N); 110679bdfe76SSatish Balay #endif 11078798bf22SSatish Balay ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr); 11088798bf22SSatish Balay ierr = MatStashDestroy_Private(&mat->bstash);CHKERRQ(ierr); 110979bdfe76SSatish Balay ierr = MatDestroy(baij->A);CHKERRQ(ierr); 111079bdfe76SSatish Balay ierr = MatDestroy(baij->B);CHKERRQ(ierr); 1111aa482453SBarry Smith #if defined (PETSC_USE_CTABLE) 11129c666560SBarry Smith if (baij->colmap) {ierr = PetscTableDestroy(baij->colmap);CHKERRQ(ierr);} 111348e59246SSatish Balay #else 111405b42c5fSBarry Smith ierr = PetscFree(baij->colmap);CHKERRQ(ierr); 111548e59246SSatish Balay #endif 111605b42c5fSBarry Smith ierr = PetscFree(baij->garray);CHKERRQ(ierr); 1117606d414cSSatish Balay if (baij->lvec) {ierr = VecDestroy(baij->lvec);CHKERRQ(ierr);} 1118606d414cSSatish Balay if (baij->Mvctx) {ierr = VecScatterDestroy(baij->Mvctx);CHKERRQ(ierr);} 111905b42c5fSBarry Smith ierr = PetscFree(baij->rowvalues);CHKERRQ(ierr); 112005b42c5fSBarry Smith ierr = PetscFree(baij->barray);CHKERRQ(ierr); 112105b42c5fSBarry Smith ierr = PetscFree(baij->hd);CHKERRQ(ierr); 1122899cda47SBarry Smith ierr = PetscFree(baij->rangebs);CHKERRQ(ierr); 1123606d414cSSatish Balay ierr = PetscFree(baij);CHKERRQ(ierr); 1124901853e0SKris Buschelman 1125dbd8c25aSHong Zhang ierr = PetscObjectChangeTypeName((PetscObject)mat,0);CHKERRQ(ierr); 1126901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatStoreValues_C","",PETSC_NULL);CHKERRQ(ierr); 1127901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatRetrieveValues_C","",PETSC_NULL);CHKERRQ(ierr); 1128901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatGetDiagonalBlock_C","",PETSC_NULL);CHKERRQ(ierr); 1129901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPIBAIJSetPreallocation_C","",PETSC_NULL);CHKERRQ(ierr); 1130aac34f13SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPIBAIJSetPreallocationCSR_C","",PETSC_NULL);CHKERRQ(ierr); 1131901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDiagonalScaleLocal_C","",PETSC_NULL);CHKERRQ(ierr); 1132901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatSetHashTableFactor_C","",PETSC_NULL);CHKERRQ(ierr); 11333a40ed3dSBarry Smith PetscFunctionReturn(0); 113479bdfe76SSatish Balay } 113579bdfe76SSatish Balay 11364a2ae208SSatish Balay #undef __FUNCT__ 11374a2ae208SSatish Balay #define __FUNCT__ "MatMult_MPIBAIJ" 1138dfbe8321SBarry Smith PetscErrorCode MatMult_MPIBAIJ(Mat A,Vec xx,Vec yy) 1139cee3aa6bSSatish Balay { 1140cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1141dfbe8321SBarry Smith PetscErrorCode ierr; 1142b24ad042SBarry Smith PetscInt nt; 1143cee3aa6bSSatish Balay 1144d64ed03dSBarry Smith PetscFunctionBegin; 1145e1311b90SBarry Smith ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr); 1146d0f46423SBarry Smith if (nt != A->cmap->n) { 114729bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx"); 114847b4a8eaSLois Curfman McInnes } 1149e1311b90SBarry Smith ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr); 1150d0f46423SBarry Smith if (nt != A->rmap->n) { 115129bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible parition of A and yy"); 115247b4a8eaSLois Curfman McInnes } 1153ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1154f830108cSBarry Smith ierr = (*a->A->ops->mult)(a->A,xx,yy);CHKERRQ(ierr); 1155ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1156f830108cSBarry Smith ierr = (*a->B->ops->multadd)(a->B,a->lvec,yy,yy);CHKERRQ(ierr); 11573a40ed3dSBarry Smith PetscFunctionReturn(0); 1158cee3aa6bSSatish Balay } 1159cee3aa6bSSatish Balay 11604a2ae208SSatish Balay #undef __FUNCT__ 11614a2ae208SSatish Balay #define __FUNCT__ "MatMultAdd_MPIBAIJ" 1162dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPIBAIJ(Mat A,Vec xx,Vec yy,Vec zz) 1163cee3aa6bSSatish Balay { 1164cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1165dfbe8321SBarry Smith PetscErrorCode ierr; 1166d64ed03dSBarry Smith 1167d64ed03dSBarry Smith PetscFunctionBegin; 1168ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1169f830108cSBarry Smith ierr = (*a->A->ops->multadd)(a->A,xx,yy,zz);CHKERRQ(ierr); 1170ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1171f830108cSBarry Smith ierr = (*a->B->ops->multadd)(a->B,a->lvec,zz,zz);CHKERRQ(ierr); 11723a40ed3dSBarry Smith PetscFunctionReturn(0); 1173cee3aa6bSSatish Balay } 1174cee3aa6bSSatish Balay 11754a2ae208SSatish Balay #undef __FUNCT__ 11764a2ae208SSatish Balay #define __FUNCT__ "MatMultTranspose_MPIBAIJ" 1177dfbe8321SBarry Smith PetscErrorCode MatMultTranspose_MPIBAIJ(Mat A,Vec xx,Vec yy) 1178cee3aa6bSSatish Balay { 1179cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1180dfbe8321SBarry Smith PetscErrorCode ierr; 1181a5ff213dSBarry Smith PetscTruth merged; 1182cee3aa6bSSatish Balay 1183d64ed03dSBarry Smith PetscFunctionBegin; 1184a5ff213dSBarry Smith ierr = VecScatterGetMerged(a->Mvctx,&merged);CHKERRQ(ierr); 1185cee3aa6bSSatish Balay /* do nondiagonal part */ 11867c922b88SBarry Smith ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr); 1187a5ff213dSBarry Smith if (!merged) { 1188cee3aa6bSSatish Balay /* send it on its way */ 1189ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 1190cee3aa6bSSatish Balay /* do local part */ 11917c922b88SBarry Smith ierr = (*a->A->ops->multtranspose)(a->A,xx,yy);CHKERRQ(ierr); 1192cee3aa6bSSatish Balay /* receive remote parts: note this assumes the values are not actually */ 1193a5ff213dSBarry Smith /* inserted in yy until the next line */ 1194ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 1195a5ff213dSBarry Smith } else { 1196a5ff213dSBarry Smith /* do local part */ 1197a5ff213dSBarry Smith ierr = (*a->A->ops->multtranspose)(a->A,xx,yy);CHKERRQ(ierr); 1198a5ff213dSBarry Smith /* send it on its way */ 1199ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 1200a5ff213dSBarry Smith /* values actually were received in the Begin() but we need to call this nop */ 1201ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 1202a5ff213dSBarry Smith } 12033a40ed3dSBarry Smith PetscFunctionReturn(0); 1204cee3aa6bSSatish Balay } 1205cee3aa6bSSatish Balay 12064a2ae208SSatish Balay #undef __FUNCT__ 12074a2ae208SSatish Balay #define __FUNCT__ "MatMultTransposeAdd_MPIBAIJ" 1208dfbe8321SBarry Smith PetscErrorCode MatMultTransposeAdd_MPIBAIJ(Mat A,Vec xx,Vec yy,Vec zz) 1209cee3aa6bSSatish Balay { 1210cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1211dfbe8321SBarry Smith PetscErrorCode ierr; 1212cee3aa6bSSatish Balay 1213d64ed03dSBarry Smith PetscFunctionBegin; 1214cee3aa6bSSatish Balay /* do nondiagonal part */ 12157c922b88SBarry Smith ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr); 1216cee3aa6bSSatish Balay /* send it on its way */ 1217ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 1218cee3aa6bSSatish Balay /* do local part */ 12197c922b88SBarry Smith ierr = (*a->A->ops->multtransposeadd)(a->A,xx,yy,zz);CHKERRQ(ierr); 1220cee3aa6bSSatish Balay /* receive remote parts: note this assumes the values are not actually */ 1221cee3aa6bSSatish Balay /* inserted in yy until the next line, which is true for my implementation*/ 1222cee3aa6bSSatish Balay /* but is not perhaps always true. */ 1223ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 12243a40ed3dSBarry Smith PetscFunctionReturn(0); 1225cee3aa6bSSatish Balay } 1226cee3aa6bSSatish Balay 1227cee3aa6bSSatish Balay /* 1228cee3aa6bSSatish Balay This only works correctly for square matrices where the subblock A->A is the 1229cee3aa6bSSatish Balay diagonal block 1230cee3aa6bSSatish Balay */ 12314a2ae208SSatish Balay #undef __FUNCT__ 12324a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonal_MPIBAIJ" 1233dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_MPIBAIJ(Mat A,Vec v) 1234cee3aa6bSSatish Balay { 1235cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1236dfbe8321SBarry Smith PetscErrorCode ierr; 1237d64ed03dSBarry Smith 1238d64ed03dSBarry Smith PetscFunctionBegin; 1239d0f46423SBarry Smith if (A->rmap->N != A->cmap->N) SETERRQ(PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block"); 12403a40ed3dSBarry Smith ierr = MatGetDiagonal(a->A,v);CHKERRQ(ierr); 12413a40ed3dSBarry Smith PetscFunctionReturn(0); 1242cee3aa6bSSatish Balay } 1243cee3aa6bSSatish Balay 12444a2ae208SSatish Balay #undef __FUNCT__ 12454a2ae208SSatish Balay #define __FUNCT__ "MatScale_MPIBAIJ" 1246f4df32b1SMatthew Knepley PetscErrorCode MatScale_MPIBAIJ(Mat A,PetscScalar aa) 1247cee3aa6bSSatish Balay { 1248cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1249dfbe8321SBarry Smith PetscErrorCode ierr; 1250d64ed03dSBarry Smith 1251d64ed03dSBarry Smith PetscFunctionBegin; 1252f4df32b1SMatthew Knepley ierr = MatScale(a->A,aa);CHKERRQ(ierr); 1253f4df32b1SMatthew Knepley ierr = MatScale(a->B,aa);CHKERRQ(ierr); 12543a40ed3dSBarry Smith PetscFunctionReturn(0); 1255cee3aa6bSSatish Balay } 1256026e39d0SSatish Balay 12574a2ae208SSatish Balay #undef __FUNCT__ 12584a2ae208SSatish Balay #define __FUNCT__ "MatGetRow_MPIBAIJ" 1259b24ad042SBarry Smith PetscErrorCode MatGetRow_MPIBAIJ(Mat matin,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 1260acdf5bf4SSatish Balay { 1261acdf5bf4SSatish Balay Mat_MPIBAIJ *mat = (Mat_MPIBAIJ*)matin->data; 126287828ca2SBarry Smith PetscScalar *vworkA,*vworkB,**pvA,**pvB,*v_p; 12636849ba73SBarry Smith PetscErrorCode ierr; 1264d0f46423SBarry Smith PetscInt bs = matin->rmap->bs,bs2 = mat->bs2,i,*cworkA,*cworkB,**pcA,**pcB; 1265d0f46423SBarry Smith PetscInt nztot,nzA,nzB,lrow,brstart = matin->rmap->rstart,brend = matin->rmap->rend; 1266899cda47SBarry Smith PetscInt *cmap,*idx_p,cstart = mat->cstartbs; 1267acdf5bf4SSatish Balay 1268d64ed03dSBarry Smith PetscFunctionBegin; 1269abc0a331SBarry Smith if (mat->getrowactive) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Already active"); 1270acdf5bf4SSatish Balay mat->getrowactive = PETSC_TRUE; 1271acdf5bf4SSatish Balay 1272acdf5bf4SSatish Balay if (!mat->rowvalues && (idx || v)) { 1273acdf5bf4SSatish Balay /* 1274acdf5bf4SSatish Balay allocate enough space to hold information from the longest row. 1275acdf5bf4SSatish Balay */ 1276acdf5bf4SSatish Balay Mat_SeqBAIJ *Aa = (Mat_SeqBAIJ*)mat->A->data,*Ba = (Mat_SeqBAIJ*)mat->B->data; 1277b24ad042SBarry Smith PetscInt max = 1,mbs = mat->mbs,tmp; 1278bd16c2feSSatish Balay for (i=0; i<mbs; i++) { 1279acdf5bf4SSatish Balay tmp = Aa->i[i+1] - Aa->i[i] + Ba->i[i+1] - Ba->i[i]; 1280acdf5bf4SSatish Balay if (max < tmp) { max = tmp; } 1281acdf5bf4SSatish Balay } 1282b24ad042SBarry Smith ierr = PetscMalloc(max*bs2*(sizeof(PetscInt)+sizeof(PetscScalar)),&mat->rowvalues);CHKERRQ(ierr); 1283b24ad042SBarry Smith mat->rowindices = (PetscInt*)(mat->rowvalues + max*bs2); 1284acdf5bf4SSatish Balay } 1285acdf5bf4SSatish Balay 128629bbc08cSBarry Smith if (row < brstart || row >= brend) SETERRQ(PETSC_ERR_SUP,"Only local rows") 1287d9d09a02SSatish Balay lrow = row - brstart; 1288acdf5bf4SSatish Balay 1289acdf5bf4SSatish Balay pvA = &vworkA; pcA = &cworkA; pvB = &vworkB; pcB = &cworkB; 1290acdf5bf4SSatish Balay if (!v) {pvA = 0; pvB = 0;} 1291acdf5bf4SSatish Balay if (!idx) {pcA = 0; if (!v) pcB = 0;} 1292f830108cSBarry Smith ierr = (*mat->A->ops->getrow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr); 1293f830108cSBarry Smith ierr = (*mat->B->ops->getrow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr); 1294acdf5bf4SSatish Balay nztot = nzA + nzB; 1295acdf5bf4SSatish Balay 1296acdf5bf4SSatish Balay cmap = mat->garray; 1297acdf5bf4SSatish Balay if (v || idx) { 1298acdf5bf4SSatish Balay if (nztot) { 1299acdf5bf4SSatish Balay /* Sort by increasing column numbers, assuming A and B already sorted */ 1300b24ad042SBarry Smith PetscInt imark = -1; 1301acdf5bf4SSatish Balay if (v) { 1302acdf5bf4SSatish Balay *v = v_p = mat->rowvalues; 1303acdf5bf4SSatish Balay for (i=0; i<nzB; i++) { 1304d9d09a02SSatish Balay if (cmap[cworkB[i]/bs] < cstart) v_p[i] = vworkB[i]; 1305acdf5bf4SSatish Balay else break; 1306acdf5bf4SSatish Balay } 1307acdf5bf4SSatish Balay imark = i; 1308acdf5bf4SSatish Balay for (i=0; i<nzA; i++) v_p[imark+i] = vworkA[i]; 1309acdf5bf4SSatish Balay for (i=imark; i<nzB; i++) v_p[nzA+i] = vworkB[i]; 1310acdf5bf4SSatish Balay } 1311acdf5bf4SSatish Balay if (idx) { 1312acdf5bf4SSatish Balay *idx = idx_p = mat->rowindices; 1313acdf5bf4SSatish Balay if (imark > -1) { 1314acdf5bf4SSatish Balay for (i=0; i<imark; i++) { 1315bd16c2feSSatish Balay idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs; 1316acdf5bf4SSatish Balay } 1317acdf5bf4SSatish Balay } else { 1318acdf5bf4SSatish Balay for (i=0; i<nzB; i++) { 1319d9d09a02SSatish Balay if (cmap[cworkB[i]/bs] < cstart) 1320d9d09a02SSatish Balay idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ; 1321acdf5bf4SSatish Balay else break; 1322acdf5bf4SSatish Balay } 1323acdf5bf4SSatish Balay imark = i; 1324acdf5bf4SSatish Balay } 1325d9d09a02SSatish Balay for (i=0; i<nzA; i++) idx_p[imark+i] = cstart*bs + cworkA[i]; 1326d9d09a02SSatish Balay for (i=imark; i<nzB; i++) idx_p[nzA+i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ; 1327acdf5bf4SSatish Balay } 1328d64ed03dSBarry Smith } else { 1329d212a18eSSatish Balay if (idx) *idx = 0; 1330d212a18eSSatish Balay if (v) *v = 0; 1331d212a18eSSatish Balay } 1332acdf5bf4SSatish Balay } 1333acdf5bf4SSatish Balay *nz = nztot; 1334f830108cSBarry Smith ierr = (*mat->A->ops->restorerow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr); 1335f830108cSBarry Smith ierr = (*mat->B->ops->restorerow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr); 13363a40ed3dSBarry Smith PetscFunctionReturn(0); 1337acdf5bf4SSatish Balay } 1338acdf5bf4SSatish Balay 13394a2ae208SSatish Balay #undef __FUNCT__ 13404a2ae208SSatish Balay #define __FUNCT__ "MatRestoreRow_MPIBAIJ" 1341b24ad042SBarry Smith PetscErrorCode MatRestoreRow_MPIBAIJ(Mat mat,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 1342acdf5bf4SSatish Balay { 1343acdf5bf4SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 1344d64ed03dSBarry Smith 1345d64ed03dSBarry Smith PetscFunctionBegin; 1346abc0a331SBarry Smith if (!baij->getrowactive) { 134729bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"MatGetRow not called"); 1348acdf5bf4SSatish Balay } 1349acdf5bf4SSatish Balay baij->getrowactive = PETSC_FALSE; 13503a40ed3dSBarry Smith PetscFunctionReturn(0); 1351acdf5bf4SSatish Balay } 1352acdf5bf4SSatish Balay 13534a2ae208SSatish Balay #undef __FUNCT__ 13544a2ae208SSatish Balay #define __FUNCT__ "MatZeroEntries_MPIBAIJ" 1355dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_MPIBAIJ(Mat A) 135658667388SSatish Balay { 135758667388SSatish Balay Mat_MPIBAIJ *l = (Mat_MPIBAIJ*)A->data; 1358dfbe8321SBarry Smith PetscErrorCode ierr; 1359d64ed03dSBarry Smith 1360d64ed03dSBarry Smith PetscFunctionBegin; 136158667388SSatish Balay ierr = MatZeroEntries(l->A);CHKERRQ(ierr); 136258667388SSatish Balay ierr = MatZeroEntries(l->B);CHKERRQ(ierr); 13633a40ed3dSBarry Smith PetscFunctionReturn(0); 136458667388SSatish Balay } 13650ac07820SSatish Balay 13664a2ae208SSatish Balay #undef __FUNCT__ 13674a2ae208SSatish Balay #define __FUNCT__ "MatGetInfo_MPIBAIJ" 1368dfbe8321SBarry Smith PetscErrorCode MatGetInfo_MPIBAIJ(Mat matin,MatInfoType flag,MatInfo *info) 13690ac07820SSatish Balay { 13704e220ebcSLois Curfman McInnes Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)matin->data; 13714e220ebcSLois Curfman McInnes Mat A = a->A,B = a->B; 1372dfbe8321SBarry Smith PetscErrorCode ierr; 1373329f5518SBarry Smith PetscReal isend[5],irecv[5]; 13740ac07820SSatish Balay 1375d64ed03dSBarry Smith PetscFunctionBegin; 1376d0f46423SBarry Smith info->block_size = (PetscReal)matin->rmap->bs; 13774e220ebcSLois Curfman McInnes ierr = MatGetInfo(A,MAT_LOCAL,info);CHKERRQ(ierr); 13780e4b21beSBarry Smith isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded; 1379de87f314SBarry Smith isend[3] = info->memory; isend[4] = info->mallocs; 13804e220ebcSLois Curfman McInnes ierr = MatGetInfo(B,MAT_LOCAL,info);CHKERRQ(ierr); 13810e4b21beSBarry Smith isend[0] += info->nz_used; isend[1] += info->nz_allocated; isend[2] += info->nz_unneeded; 1382de87f314SBarry Smith isend[3] += info->memory; isend[4] += info->mallocs; 13830ac07820SSatish Balay if (flag == MAT_LOCAL) { 13844e220ebcSLois Curfman McInnes info->nz_used = isend[0]; 13854e220ebcSLois Curfman McInnes info->nz_allocated = isend[1]; 13864e220ebcSLois Curfman McInnes info->nz_unneeded = isend[2]; 13874e220ebcSLois Curfman McInnes info->memory = isend[3]; 13884e220ebcSLois Curfman McInnes info->mallocs = isend[4]; 13890ac07820SSatish Balay } else if (flag == MAT_GLOBAL_MAX) { 13907adad957SLisandro Dalcin ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_MAX,((PetscObject)matin)->comm);CHKERRQ(ierr); 13914e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 13924e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 13934e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 13944e220ebcSLois Curfman McInnes info->memory = irecv[3]; 13954e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 13960ac07820SSatish Balay } else if (flag == MAT_GLOBAL_SUM) { 13977adad957SLisandro Dalcin ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_SUM,((PetscObject)matin)->comm);CHKERRQ(ierr); 13984e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 13994e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 14004e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 14014e220ebcSLois Curfman McInnes info->memory = irecv[3]; 14024e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 1403d41123aaSBarry Smith } else { 140477431f27SBarry Smith SETERRQ1(PETSC_ERR_ARG_WRONG,"Unknown MatInfoType argument %d",(int)flag); 14050ac07820SSatish Balay } 14064e220ebcSLois Curfman McInnes info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */ 14074e220ebcSLois Curfman McInnes info->fill_ratio_needed = 0; 14084e220ebcSLois Curfman McInnes info->factor_mallocs = 0; 14093a40ed3dSBarry Smith PetscFunctionReturn(0); 14100ac07820SSatish Balay } 14110ac07820SSatish Balay 14124a2ae208SSatish Balay #undef __FUNCT__ 14134a2ae208SSatish Balay #define __FUNCT__ "MatSetOption_MPIBAIJ" 14144e0d8c25SBarry Smith PetscErrorCode MatSetOption_MPIBAIJ(Mat A,MatOption op,PetscTruth flg) 141558667388SSatish Balay { 141658667388SSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1417dfbe8321SBarry Smith PetscErrorCode ierr; 141858667388SSatish Balay 1419d64ed03dSBarry Smith PetscFunctionBegin; 142012c028f9SKris Buschelman switch (op) { 1421512a5fc5SBarry Smith case MAT_NEW_NONZERO_LOCATIONS: 142212c028f9SKris Buschelman case MAT_NEW_NONZERO_ALLOCATION_ERR: 142328b2fa4aSMatthew Knepley case MAT_UNUSED_NONZERO_LOCATION_ERR: 1424a9817697SBarry Smith case MAT_KEEP_NONZERO_PATTERN: 142512c028f9SKris Buschelman case MAT_NEW_NONZERO_LOCATION_ERR: 14264e0d8c25SBarry Smith ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 14274e0d8c25SBarry Smith ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr); 142812c028f9SKris Buschelman break; 142912c028f9SKris Buschelman case MAT_ROW_ORIENTED: 14304e0d8c25SBarry Smith a->roworiented = flg; 14314e0d8c25SBarry Smith ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 14324e0d8c25SBarry Smith ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr); 143312c028f9SKris Buschelman break; 14344e0d8c25SBarry Smith case MAT_NEW_DIAGONALS: 1435290bbb0aSBarry Smith ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr); 143612c028f9SKris Buschelman break; 143712c028f9SKris Buschelman case MAT_IGNORE_OFF_PROC_ENTRIES: 14384e0d8c25SBarry Smith a->donotstash = flg; 143912c028f9SKris Buschelman break; 144012c028f9SKris Buschelman case MAT_USE_HASH_TABLE: 14414e0d8c25SBarry Smith a->ht_flag = flg; 144212c028f9SKris Buschelman break; 144377e54ba9SKris Buschelman case MAT_SYMMETRIC: 144477e54ba9SKris Buschelman case MAT_STRUCTURALLY_SYMMETRIC: 14452188ac68SBarry Smith case MAT_HERMITIAN: 14462188ac68SBarry Smith case MAT_SYMMETRY_ETERNAL: 14474e0d8c25SBarry Smith ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 144877e54ba9SKris Buschelman break; 144912c028f9SKris Buschelman default: 1450ad86a440SBarry Smith SETERRQ1(PETSC_ERR_SUP,"unknown option %d",op); 1451d64ed03dSBarry Smith } 14523a40ed3dSBarry Smith PetscFunctionReturn(0); 145358667388SSatish Balay } 145458667388SSatish Balay 14554a2ae208SSatish Balay #undef __FUNCT__ 14564a2ae208SSatish Balay #define __FUNCT__ "MatTranspose_MPIBAIJ(" 1457fc4dec0aSBarry Smith PetscErrorCode MatTranspose_MPIBAIJ(Mat A,MatReuse reuse,Mat *matout) 14580ac07820SSatish Balay { 14590ac07820SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)A->data; 14600ac07820SSatish Balay Mat_SeqBAIJ *Aloc; 14610ac07820SSatish Balay Mat B; 1462dfbe8321SBarry Smith PetscErrorCode ierr; 1463d0f46423SBarry Smith PetscInt M=A->rmap->N,N=A->cmap->N,*ai,*aj,i,*rvals,j,k,col; 1464d0f46423SBarry Smith PetscInt bs=A->rmap->bs,mbs=baij->mbs; 14653eda8832SBarry Smith MatScalar *a; 14660ac07820SSatish Balay 1467d64ed03dSBarry Smith PetscFunctionBegin; 1468e9695a30SBarry Smith if (reuse == MAT_REUSE_MATRIX && A == *matout && M != N) SETERRQ(PETSC_ERR_ARG_SIZ,"Square matrix only for in-place"); 1469fc4dec0aSBarry Smith if (reuse == MAT_INITIAL_MATRIX || *matout == A) { 14707adad957SLisandro Dalcin ierr = MatCreate(((PetscObject)A)->comm,&B);CHKERRQ(ierr); 1471d0f46423SBarry Smith ierr = MatSetSizes(B,A->cmap->n,A->rmap->n,N,M);CHKERRQ(ierr); 14727adad957SLisandro Dalcin ierr = MatSetType(B,((PetscObject)A)->type_name);CHKERRQ(ierr); 1473d0f46423SBarry Smith ierr = MatMPIBAIJSetPreallocation(B,A->rmap->bs,0,PETSC_NULL,0,PETSC_NULL);CHKERRQ(ierr); 1474fc4dec0aSBarry Smith } else { 1475fc4dec0aSBarry Smith B = *matout; 1476fc4dec0aSBarry Smith } 14770ac07820SSatish Balay 14780ac07820SSatish Balay /* copy over the A part */ 14790ac07820SSatish Balay Aloc = (Mat_SeqBAIJ*)baij->A->data; 14800ac07820SSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 1481b24ad042SBarry Smith ierr = PetscMalloc(bs*sizeof(PetscInt),&rvals);CHKERRQ(ierr); 14820ac07820SSatish Balay 14830ac07820SSatish Balay for (i=0; i<mbs; i++) { 1484899cda47SBarry Smith rvals[0] = bs*(baij->rstartbs + i); 14850ac07820SSatish Balay for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; } 14860ac07820SSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 1487899cda47SBarry Smith col = (baij->cstartbs+aj[j])*bs; 14880ac07820SSatish Balay for (k=0; k<bs; k++) { 148997e5c40aSBarry Smith ierr = MatSetValues_MPIBAIJ(B,1,&col,bs,rvals,a,INSERT_VALUES);CHKERRQ(ierr); 14900ac07820SSatish Balay col++; a += bs; 14910ac07820SSatish Balay } 14920ac07820SSatish Balay } 14930ac07820SSatish Balay } 14940ac07820SSatish Balay /* copy over the B part */ 14950ac07820SSatish Balay Aloc = (Mat_SeqBAIJ*)baij->B->data; 14960ac07820SSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 14970ac07820SSatish Balay for (i=0; i<mbs; i++) { 1498899cda47SBarry Smith rvals[0] = bs*(baij->rstartbs + i); 14990ac07820SSatish Balay for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; } 15000ac07820SSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 15010ac07820SSatish Balay col = baij->garray[aj[j]]*bs; 15020ac07820SSatish Balay for (k=0; k<bs; k++) { 150397e5c40aSBarry Smith ierr = MatSetValues_MPIBAIJ(B,1,&col,bs,rvals,a,INSERT_VALUES);CHKERRQ(ierr); 15040ac07820SSatish Balay col++; a += bs; 15050ac07820SSatish Balay } 15060ac07820SSatish Balay } 15070ac07820SSatish Balay } 1508606d414cSSatish Balay ierr = PetscFree(rvals);CHKERRQ(ierr); 15090ac07820SSatish Balay ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 15100ac07820SSatish Balay ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 15110ac07820SSatish Balay 1512815cbec1SBarry Smith if (reuse == MAT_INITIAL_MATRIX || *matout != A) { 15130ac07820SSatish Balay *matout = B; 15140ac07820SSatish Balay } else { 1515273d9f13SBarry Smith ierr = MatHeaderCopy(A,B);CHKERRQ(ierr); 15160ac07820SSatish Balay } 15173a40ed3dSBarry Smith PetscFunctionReturn(0); 15180ac07820SSatish Balay } 15190e95ebc0SSatish Balay 15204a2ae208SSatish Balay #undef __FUNCT__ 15214a2ae208SSatish Balay #define __FUNCT__ "MatDiagonalScale_MPIBAIJ" 1522dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_MPIBAIJ(Mat mat,Vec ll,Vec rr) 15230e95ebc0SSatish Balay { 152436c4a09eSSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 152536c4a09eSSatish Balay Mat a = baij->A,b = baij->B; 1526dfbe8321SBarry Smith PetscErrorCode ierr; 1527b24ad042SBarry Smith PetscInt s1,s2,s3; 15280e95ebc0SSatish Balay 1529d64ed03dSBarry Smith PetscFunctionBegin; 153036c4a09eSSatish Balay ierr = MatGetLocalSize(mat,&s2,&s3);CHKERRQ(ierr); 153136c4a09eSSatish Balay if (rr) { 153236c4a09eSSatish Balay ierr = VecGetLocalSize(rr,&s1);CHKERRQ(ierr); 153329bbc08cSBarry Smith if (s1!=s3) SETERRQ(PETSC_ERR_ARG_SIZ,"right vector non-conforming local size"); 153436c4a09eSSatish Balay /* Overlap communication with computation. */ 1535ca9f406cSSatish Balay ierr = VecScatterBegin(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 153636c4a09eSSatish Balay } 15370e95ebc0SSatish Balay if (ll) { 15380e95ebc0SSatish Balay ierr = VecGetLocalSize(ll,&s1);CHKERRQ(ierr); 153929bbc08cSBarry Smith if (s1!=s2) SETERRQ(PETSC_ERR_ARG_SIZ,"left vector non-conforming local size"); 1540a21fb8cbSBarry Smith ierr = (*b->ops->diagonalscale)(b,ll,PETSC_NULL);CHKERRQ(ierr); 15410e95ebc0SSatish Balay } 154236c4a09eSSatish Balay /* scale the diagonal block */ 154336c4a09eSSatish Balay ierr = (*a->ops->diagonalscale)(a,ll,rr);CHKERRQ(ierr); 154436c4a09eSSatish Balay 154536c4a09eSSatish Balay if (rr) { 154636c4a09eSSatish Balay /* Do a scatter end and then right scale the off-diagonal block */ 1547ca9f406cSSatish Balay ierr = VecScatterEnd(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1548a21fb8cbSBarry Smith ierr = (*b->ops->diagonalscale)(b,PETSC_NULL,baij->lvec);CHKERRQ(ierr); 154936c4a09eSSatish Balay } 155036c4a09eSSatish Balay 15513a40ed3dSBarry Smith PetscFunctionReturn(0); 15520e95ebc0SSatish Balay } 15530e95ebc0SSatish Balay 15544a2ae208SSatish Balay #undef __FUNCT__ 15554a2ae208SSatish Balay #define __FUNCT__ "MatZeroRows_MPIBAIJ" 1556f4df32b1SMatthew Knepley PetscErrorCode MatZeroRows_MPIBAIJ(Mat A,PetscInt N,const PetscInt rows[],PetscScalar diag) 15570ac07820SSatish Balay { 15580ac07820SSatish Balay Mat_MPIBAIJ *l = (Mat_MPIBAIJ*)A->data; 15596849ba73SBarry Smith PetscErrorCode ierr; 1560b24ad042SBarry Smith PetscMPIInt imdex,size = l->size,n,rank = l->rank; 1561d0f46423SBarry Smith PetscInt i,*owners = A->rmap->range; 1562b24ad042SBarry Smith PetscInt *nprocs,j,idx,nsends,row; 1563b24ad042SBarry Smith PetscInt nmax,*svalues,*starts,*owner,nrecvs; 15647adad957SLisandro Dalcin PetscInt *rvalues,tag = ((PetscObject)A)->tag,count,base,slen,*source,lastidx = -1; 1565d0f46423SBarry Smith PetscInt *lens,*lrows,*values,rstart_bs=A->rmap->rstart; 15667adad957SLisandro Dalcin MPI_Comm comm = ((PetscObject)A)->comm; 15670ac07820SSatish Balay MPI_Request *send_waits,*recv_waits; 15680ac07820SSatish Balay MPI_Status recv_status,*send_status; 15696543fbbaSBarry Smith #if defined(PETSC_DEBUG) 15706543fbbaSBarry Smith PetscTruth found = PETSC_FALSE; 15716543fbbaSBarry Smith #endif 15720ac07820SSatish Balay 1573d64ed03dSBarry Smith PetscFunctionBegin; 15740ac07820SSatish Balay /* first count number of contributors to each processor */ 1575b24ad042SBarry Smith ierr = PetscMalloc(2*size*sizeof(PetscInt),&nprocs);CHKERRQ(ierr); 1576b24ad042SBarry Smith ierr = PetscMemzero(nprocs,2*size*sizeof(PetscInt));CHKERRQ(ierr); 1577b24ad042SBarry Smith ierr = PetscMalloc((N+1)*sizeof(PetscInt),&owner);CHKERRQ(ierr); /* see note*/ 15786543fbbaSBarry Smith j = 0; 15790ac07820SSatish Balay for (i=0; i<N; i++) { 15806543fbbaSBarry Smith if (lastidx > (idx = rows[i])) j = 0; 15816543fbbaSBarry Smith lastidx = idx; 15826543fbbaSBarry Smith for (; j<size; j++) { 1583357c27ecSBarry Smith if (idx >= owners[j] && idx < owners[j+1]) { 15846543fbbaSBarry Smith nprocs[2*j]++; 15856543fbbaSBarry Smith nprocs[2*j+1] = 1; 15866543fbbaSBarry Smith owner[i] = j; 15876543fbbaSBarry Smith #if defined(PETSC_DEBUG) 15886543fbbaSBarry Smith found = PETSC_TRUE; 15896543fbbaSBarry Smith #endif 15906543fbbaSBarry Smith break; 15910ac07820SSatish Balay } 15920ac07820SSatish Balay } 15936543fbbaSBarry Smith #if defined(PETSC_DEBUG) 159429bbc08cSBarry Smith if (!found) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Index out of range"); 15956543fbbaSBarry Smith found = PETSC_FALSE; 15966543fbbaSBarry Smith #endif 15970ac07820SSatish Balay } 1598c1dc657dSBarry Smith nsends = 0; for (i=0; i<size; i++) { nsends += nprocs[2*i+1];} 15990ac07820SSatish Balay 16000ac07820SSatish Balay /* inform other processors of number of messages and max length*/ 1601c1dc657dSBarry Smith ierr = PetscMaxSum(comm,nprocs,&nmax,&nrecvs);CHKERRQ(ierr); 16020ac07820SSatish Balay 16030ac07820SSatish Balay /* post receives: */ 1604b24ad042SBarry Smith ierr = PetscMalloc((nrecvs+1)*(nmax+1)*sizeof(PetscInt),&rvalues);CHKERRQ(ierr); 1605b0a32e0cSBarry Smith ierr = PetscMalloc((nrecvs+1)*sizeof(MPI_Request),&recv_waits);CHKERRQ(ierr); 16060ac07820SSatish Balay for (i=0; i<nrecvs; i++) { 1607b24ad042SBarry Smith ierr = MPI_Irecv(rvalues+nmax*i,nmax,MPIU_INT,MPI_ANY_SOURCE,tag,comm,recv_waits+i);CHKERRQ(ierr); 16080ac07820SSatish Balay } 16090ac07820SSatish Balay 16100ac07820SSatish Balay /* do sends: 16110ac07820SSatish Balay 1) starts[i] gives the starting index in svalues for stuff going to 16120ac07820SSatish Balay the ith processor 16130ac07820SSatish Balay */ 1614b24ad042SBarry Smith ierr = PetscMalloc((N+1)*sizeof(PetscInt),&svalues);CHKERRQ(ierr); 1615b0a32e0cSBarry Smith ierr = PetscMalloc((nsends+1)*sizeof(MPI_Request),&send_waits);CHKERRQ(ierr); 1616b24ad042SBarry Smith ierr = PetscMalloc((size+1)*sizeof(PetscInt),&starts);CHKERRQ(ierr); 16170ac07820SSatish Balay starts[0] = 0; 1618c1dc657dSBarry Smith for (i=1; i<size; i++) { starts[i] = starts[i-1] + nprocs[2*i-2];} 16190ac07820SSatish Balay for (i=0; i<N; i++) { 16200ac07820SSatish Balay svalues[starts[owner[i]]++] = rows[i]; 16210ac07820SSatish Balay } 16220ac07820SSatish Balay 16230ac07820SSatish Balay starts[0] = 0; 1624c1dc657dSBarry Smith for (i=1; i<size+1; i++) { starts[i] = starts[i-1] + nprocs[2*i-2];} 16250ac07820SSatish Balay count = 0; 16260ac07820SSatish Balay for (i=0; i<size; i++) { 1627c1dc657dSBarry Smith if (nprocs[2*i+1]) { 1628b24ad042SBarry Smith ierr = MPI_Isend(svalues+starts[i],nprocs[2*i],MPIU_INT,i,tag,comm,send_waits+count++);CHKERRQ(ierr); 16290ac07820SSatish Balay } 16300ac07820SSatish Balay } 1631606d414cSSatish Balay ierr = PetscFree(starts);CHKERRQ(ierr); 16320ac07820SSatish Balay 1633357c27ecSBarry Smith base = owners[rank]; 16340ac07820SSatish Balay 16350ac07820SSatish Balay /* wait on receives */ 1636b24ad042SBarry Smith ierr = PetscMalloc(2*(nrecvs+1)*sizeof(PetscInt),&lens);CHKERRQ(ierr); 16370ac07820SSatish Balay source = lens + nrecvs; 16380ac07820SSatish Balay count = nrecvs; slen = 0; 16390ac07820SSatish Balay while (count) { 1640ca161407SBarry Smith ierr = MPI_Waitany(nrecvs,recv_waits,&imdex,&recv_status);CHKERRQ(ierr); 16410ac07820SSatish Balay /* unpack receives into our local space */ 1642b24ad042SBarry Smith ierr = MPI_Get_count(&recv_status,MPIU_INT,&n);CHKERRQ(ierr); 16430ac07820SSatish Balay source[imdex] = recv_status.MPI_SOURCE; 16440ac07820SSatish Balay lens[imdex] = n; 16450ac07820SSatish Balay slen += n; 16460ac07820SSatish Balay count--; 16470ac07820SSatish Balay } 1648606d414cSSatish Balay ierr = PetscFree(recv_waits);CHKERRQ(ierr); 16490ac07820SSatish Balay 16500ac07820SSatish Balay /* move the data into the send scatter */ 1651b24ad042SBarry Smith ierr = PetscMalloc((slen+1)*sizeof(PetscInt),&lrows);CHKERRQ(ierr); 16520ac07820SSatish Balay count = 0; 16530ac07820SSatish Balay for (i=0; i<nrecvs; i++) { 16540ac07820SSatish Balay values = rvalues + i*nmax; 16550ac07820SSatish Balay for (j=0; j<lens[i]; j++) { 16560ac07820SSatish Balay lrows[count++] = values[j] - base; 16570ac07820SSatish Balay } 16580ac07820SSatish Balay } 1659606d414cSSatish Balay ierr = PetscFree(rvalues);CHKERRQ(ierr); 1660606d414cSSatish Balay ierr = PetscFree(lens);CHKERRQ(ierr); 1661606d414cSSatish Balay ierr = PetscFree(owner);CHKERRQ(ierr); 1662606d414cSSatish Balay ierr = PetscFree(nprocs);CHKERRQ(ierr); 16630ac07820SSatish Balay 16640ac07820SSatish Balay /* actually zap the local rows */ 166572dacd9aSBarry Smith /* 166672dacd9aSBarry Smith Zero the required rows. If the "diagonal block" of the matrix 1667a8c7a070SBarry Smith is square and the user wishes to set the diagonal we use separate 166872dacd9aSBarry Smith code so that MatSetValues() is not called for each diagonal allocating 166972dacd9aSBarry Smith new memory, thus calling lots of mallocs and slowing things down. 167072dacd9aSBarry Smith 167172dacd9aSBarry Smith */ 16729c957beeSSatish Balay /* must zero l->B before l->A because the (diag) case below may put values into l->B*/ 1673f4df32b1SMatthew Knepley ierr = MatZeroRows_SeqBAIJ(l->B,slen,lrows,0.0);CHKERRQ(ierr); 1674d0f46423SBarry Smith if ((diag != 0.0) && (l->A->rmap->N == l->A->cmap->N)) { 1675f4df32b1SMatthew Knepley ierr = MatZeroRows_SeqBAIJ(l->A,slen,lrows,diag);CHKERRQ(ierr); 1676f4df32b1SMatthew Knepley } else if (diag != 0.0) { 1677f4df32b1SMatthew Knepley ierr = MatZeroRows_SeqBAIJ(l->A,slen,lrows,0.0);CHKERRQ(ierr); 1678fa46199cSSatish Balay if (((Mat_SeqBAIJ*)l->A->data)->nonew) { 167929bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"MatZeroRows() on rectangular matrices cannot be used with the Mat options \n\ 1680512a5fc5SBarry Smith MAT_NEW_NONZERO_LOCATIONS,MAT_NEW_NONZERO_LOCATION_ERR,MAT_NEW_NONZERO_ALLOCATION_ERR"); 16816525c446SSatish Balay } 1682a07cd24cSSatish Balay for (i=0; i<slen; i++) { 1683a07cd24cSSatish Balay row = lrows[i] + rstart_bs; 1684f4df32b1SMatthew Knepley ierr = MatSetValues(A,1,&row,1,&row,&diag,INSERT_VALUES);CHKERRQ(ierr); 1685a07cd24cSSatish Balay } 1686a07cd24cSSatish Balay ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 1687a07cd24cSSatish Balay ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 16889c957beeSSatish Balay } else { 1689f4df32b1SMatthew Knepley ierr = MatZeroRows_SeqBAIJ(l->A,slen,lrows,0.0);CHKERRQ(ierr); 1690a07cd24cSSatish Balay } 16919c957beeSSatish Balay 1692606d414cSSatish Balay ierr = PetscFree(lrows);CHKERRQ(ierr); 1693a07cd24cSSatish Balay 16940ac07820SSatish Balay /* wait on sends */ 16950ac07820SSatish Balay if (nsends) { 169682502324SSatish Balay ierr = PetscMalloc(nsends*sizeof(MPI_Status),&send_status);CHKERRQ(ierr); 1697ca161407SBarry Smith ierr = MPI_Waitall(nsends,send_waits,send_status);CHKERRQ(ierr); 1698606d414cSSatish Balay ierr = PetscFree(send_status);CHKERRQ(ierr); 16990ac07820SSatish Balay } 1700606d414cSSatish Balay ierr = PetscFree(send_waits);CHKERRQ(ierr); 1701606d414cSSatish Balay ierr = PetscFree(svalues);CHKERRQ(ierr); 17020ac07820SSatish Balay 17033a40ed3dSBarry Smith PetscFunctionReturn(0); 17040ac07820SSatish Balay } 170572dacd9aSBarry Smith 17064a2ae208SSatish Balay #undef __FUNCT__ 17074a2ae208SSatish Balay #define __FUNCT__ "MatSetUnfactored_MPIBAIJ" 1708dfbe8321SBarry Smith PetscErrorCode MatSetUnfactored_MPIBAIJ(Mat A) 1709bb5a7306SBarry Smith { 1710bb5a7306SBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1711dfbe8321SBarry Smith PetscErrorCode ierr; 1712d64ed03dSBarry Smith 1713d64ed03dSBarry Smith PetscFunctionBegin; 1714bb5a7306SBarry Smith ierr = MatSetUnfactored(a->A);CHKERRQ(ierr); 17153a40ed3dSBarry Smith PetscFunctionReturn(0); 1716bb5a7306SBarry Smith } 1717bb5a7306SBarry Smith 17186849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIBAIJ(Mat,MatDuplicateOption,Mat *); 17190ac07820SSatish Balay 17204a2ae208SSatish Balay #undef __FUNCT__ 17214a2ae208SSatish Balay #define __FUNCT__ "MatEqual_MPIBAIJ" 1722dfbe8321SBarry Smith PetscErrorCode MatEqual_MPIBAIJ(Mat A,Mat B,PetscTruth *flag) 17237fc3c18eSBarry Smith { 17247fc3c18eSBarry Smith Mat_MPIBAIJ *matB = (Mat_MPIBAIJ*)B->data,*matA = (Mat_MPIBAIJ*)A->data; 17257fc3c18eSBarry Smith Mat a,b,c,d; 17267fc3c18eSBarry Smith PetscTruth flg; 1727dfbe8321SBarry Smith PetscErrorCode ierr; 17287fc3c18eSBarry Smith 17297fc3c18eSBarry Smith PetscFunctionBegin; 17307fc3c18eSBarry Smith a = matA->A; b = matA->B; 17317fc3c18eSBarry Smith c = matB->A; d = matB->B; 17327fc3c18eSBarry Smith 17337fc3c18eSBarry Smith ierr = MatEqual(a,c,&flg);CHKERRQ(ierr); 1734abc0a331SBarry Smith if (flg) { 17357fc3c18eSBarry Smith ierr = MatEqual(b,d,&flg);CHKERRQ(ierr); 17367fc3c18eSBarry Smith } 17377adad957SLisandro Dalcin ierr = MPI_Allreduce(&flg,flag,1,MPI_INT,MPI_LAND,((PetscObject)A)->comm);CHKERRQ(ierr); 17387fc3c18eSBarry Smith PetscFunctionReturn(0); 17397fc3c18eSBarry Smith } 17407fc3c18eSBarry Smith 17413c896bc6SHong Zhang #undef __FUNCT__ 17423c896bc6SHong Zhang #define __FUNCT__ "MatCopy_MPIBAIJ" 17433c896bc6SHong Zhang PetscErrorCode MatCopy_MPIBAIJ(Mat A,Mat B,MatStructure str) 17443c896bc6SHong Zhang { 17453c896bc6SHong Zhang PetscErrorCode ierr; 17463c896bc6SHong Zhang Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 17473c896bc6SHong Zhang Mat_MPIBAIJ *b = (Mat_MPIBAIJ *)B->data; 17483c896bc6SHong Zhang 17493c896bc6SHong Zhang PetscFunctionBegin; 17503c896bc6SHong Zhang /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */ 17513c896bc6SHong Zhang if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) { 17523c896bc6SHong Zhang ierr = MatCopy_Basic(A,B,str);CHKERRQ(ierr); 17533c896bc6SHong Zhang } else { 17543c896bc6SHong Zhang ierr = MatCopy(a->A,b->A,str);CHKERRQ(ierr); 17553c896bc6SHong Zhang ierr = MatCopy(a->B,b->B,str);CHKERRQ(ierr); 17563c896bc6SHong Zhang } 17573c896bc6SHong Zhang PetscFunctionReturn(0); 17583c896bc6SHong Zhang } 1759273d9f13SBarry Smith 17604a2ae208SSatish Balay #undef __FUNCT__ 17614a2ae208SSatish Balay #define __FUNCT__ "MatSetUpPreallocation_MPIBAIJ" 1762dfbe8321SBarry Smith PetscErrorCode MatSetUpPreallocation_MPIBAIJ(Mat A) 1763273d9f13SBarry Smith { 1764dfbe8321SBarry Smith PetscErrorCode ierr; 1765273d9f13SBarry Smith 1766273d9f13SBarry Smith PetscFunctionBegin; 1767db4efbfdSBarry Smith ierr = MatMPIBAIJSetPreallocation(A,-PetscMax(A->rmap->bs,1),PETSC_DEFAULT,0,PETSC_DEFAULT,0);CHKERRQ(ierr); 1768273d9f13SBarry Smith PetscFunctionReturn(0); 1769273d9f13SBarry Smith } 1770273d9f13SBarry Smith 17714fe895cdSHong Zhang #include "petscblaslapack.h" 17724fe895cdSHong Zhang #undef __FUNCT__ 17734fe895cdSHong Zhang #define __FUNCT__ "MatAXPY_MPIBAIJ" 17744fe895cdSHong Zhang PetscErrorCode MatAXPY_MPIBAIJ(Mat Y,PetscScalar a,Mat X,MatStructure str) 17754fe895cdSHong Zhang { 17764fe895cdSHong Zhang PetscErrorCode ierr; 17774fe895cdSHong Zhang Mat_MPIBAIJ *xx=(Mat_MPIBAIJ *)X->data,*yy=(Mat_MPIBAIJ *)Y->data; 17784fe895cdSHong Zhang PetscBLASInt bnz,one=1; 17794fe895cdSHong Zhang Mat_SeqBAIJ *x,*y; 17804fe895cdSHong Zhang 17814fe895cdSHong Zhang PetscFunctionBegin; 17824fe895cdSHong Zhang if (str == SAME_NONZERO_PATTERN) { 17834fe895cdSHong Zhang PetscScalar alpha = a; 17844fe895cdSHong Zhang x = (Mat_SeqBAIJ *)xx->A->data; 17854fe895cdSHong Zhang y = (Mat_SeqBAIJ *)yy->A->data; 17860805154bSBarry Smith bnz = PetscBLASIntCast(x->nz); 17874fe895cdSHong Zhang BLASaxpy_(&bnz,&alpha,x->a,&one,y->a,&one); 17884fe895cdSHong Zhang x = (Mat_SeqBAIJ *)xx->B->data; 17894fe895cdSHong Zhang y = (Mat_SeqBAIJ *)yy->B->data; 17900805154bSBarry Smith bnz = PetscBLASIntCast(x->nz); 17914fe895cdSHong Zhang BLASaxpy_(&bnz,&alpha,x->a,&one,y->a,&one); 17924fe895cdSHong Zhang } else { 17934fe895cdSHong Zhang ierr = MatAXPY_Basic(Y,a,X,str);CHKERRQ(ierr); 17944fe895cdSHong Zhang } 17954fe895cdSHong Zhang PetscFunctionReturn(0); 17964fe895cdSHong Zhang } 17974fe895cdSHong Zhang 179899cafbc1SBarry Smith #undef __FUNCT__ 179999cafbc1SBarry Smith #define __FUNCT__ "MatRealPart_MPIBAIJ" 180099cafbc1SBarry Smith PetscErrorCode MatRealPart_MPIBAIJ(Mat A) 180199cafbc1SBarry Smith { 180299cafbc1SBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 180399cafbc1SBarry Smith PetscErrorCode ierr; 180499cafbc1SBarry Smith 180599cafbc1SBarry Smith PetscFunctionBegin; 180699cafbc1SBarry Smith ierr = MatRealPart(a->A);CHKERRQ(ierr); 180799cafbc1SBarry Smith ierr = MatRealPart(a->B);CHKERRQ(ierr); 180899cafbc1SBarry Smith PetscFunctionReturn(0); 180999cafbc1SBarry Smith } 181099cafbc1SBarry Smith 181199cafbc1SBarry Smith #undef __FUNCT__ 181299cafbc1SBarry Smith #define __FUNCT__ "MatImaginaryPart_MPIBAIJ" 181399cafbc1SBarry Smith PetscErrorCode MatImaginaryPart_MPIBAIJ(Mat A) 181499cafbc1SBarry Smith { 181599cafbc1SBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 181699cafbc1SBarry Smith PetscErrorCode ierr; 181799cafbc1SBarry Smith 181899cafbc1SBarry Smith PetscFunctionBegin; 181999cafbc1SBarry Smith ierr = MatImaginaryPart(a->A);CHKERRQ(ierr); 182099cafbc1SBarry Smith ierr = MatImaginaryPart(a->B);CHKERRQ(ierr); 182199cafbc1SBarry Smith PetscFunctionReturn(0); 182299cafbc1SBarry Smith } 182399cafbc1SBarry Smith 182482094794SBarry Smith #undef __FUNCT__ 182582094794SBarry Smith #define __FUNCT__ "MatGetSubMatrix_MPIBAIJ" 18264aa3045dSJed Brown PetscErrorCode MatGetSubMatrix_MPIBAIJ(Mat mat,IS isrow,IS iscol,MatReuse call,Mat *newmat) 18274aa3045dSJed Brown { 18284aa3045dSJed Brown PetscErrorCode ierr; 18294aa3045dSJed Brown IS iscol_local; 18304aa3045dSJed Brown PetscInt csize; 18314aa3045dSJed Brown 18324aa3045dSJed Brown PetscFunctionBegin; 18334aa3045dSJed Brown ierr = ISGetLocalSize(iscol,&csize);CHKERRQ(ierr); 1834b79d0421SJed Brown if (call == MAT_REUSE_MATRIX) { 1835b79d0421SJed Brown ierr = PetscObjectQuery((PetscObject)*newmat,"ISAllGather",(PetscObject*)&iscol_local);CHKERRQ(ierr); 1836b79d0421SJed Brown if (!iscol_local) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Submatrix passed in was not used before, cannot reuse"); 1837b79d0421SJed Brown } else { 18384aa3045dSJed Brown ierr = ISAllGather(iscol,&iscol_local);CHKERRQ(ierr); 1839b79d0421SJed Brown } 18404aa3045dSJed Brown ierr = MatGetSubMatrix_MPIBAIJ_Private(mat,isrow,iscol_local,csize,call,newmat);CHKERRQ(ierr); 1841b79d0421SJed Brown if (call == MAT_INITIAL_MATRIX) { 1842b79d0421SJed Brown ierr = PetscObjectCompose((PetscObject)*newmat,"ISAllGather",(PetscObject)iscol_local);CHKERRQ(ierr); 18434aa3045dSJed Brown ierr = ISDestroy(iscol_local);CHKERRQ(ierr); 1844b79d0421SJed Brown } 18454aa3045dSJed Brown PetscFunctionReturn(0); 18464aa3045dSJed Brown } 18474aa3045dSJed Brown 18484aa3045dSJed Brown #undef __FUNCT__ 18494aa3045dSJed Brown #define __FUNCT__ "MatGetSubMatrix_MPIBAIJ" 185082094794SBarry Smith /* 185182094794SBarry Smith Not great since it makes two copies of the submatrix, first an SeqBAIJ 185282094794SBarry Smith in local and then by concatenating the local matrices the end result. 185382094794SBarry Smith Writing it directly would be much like MatGetSubMatrices_MPIBAIJ() 185482094794SBarry Smith */ 18554aa3045dSJed Brown PetscErrorCode MatGetSubMatrix_MPIBAIJ_Private(Mat mat,IS isrow,IS iscol,PetscInt csize,MatReuse call,Mat *newmat) 185682094794SBarry Smith { 185782094794SBarry Smith PetscErrorCode ierr; 185882094794SBarry Smith PetscMPIInt rank,size; 185982094794SBarry Smith PetscInt i,m,n,rstart,row,rend,nz,*cwork,j,bs; 186082094794SBarry Smith PetscInt *ii,*jj,nlocal,*dlens,*olens,dlen,olen,jend,mglobal; 186182094794SBarry Smith Mat *local,M,Mreuse; 186282094794SBarry Smith MatScalar *vwork,*aa; 186382094794SBarry Smith MPI_Comm comm = ((PetscObject)mat)->comm; 186482094794SBarry Smith Mat_SeqBAIJ *aij; 186582094794SBarry Smith 186682094794SBarry Smith 186782094794SBarry Smith PetscFunctionBegin; 186882094794SBarry Smith ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 186982094794SBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 187082094794SBarry Smith 187182094794SBarry Smith if (call == MAT_REUSE_MATRIX) { 187282094794SBarry Smith ierr = PetscObjectQuery((PetscObject)*newmat,"SubMatrix",(PetscObject *)&Mreuse);CHKERRQ(ierr); 187382094794SBarry Smith if (!Mreuse) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Submatrix passed in was not used before, cannot reuse"); 187482094794SBarry Smith local = &Mreuse; 187582094794SBarry Smith ierr = MatGetSubMatrices(mat,1,&isrow,&iscol,MAT_REUSE_MATRIX,&local);CHKERRQ(ierr); 187682094794SBarry Smith } else { 187782094794SBarry Smith ierr = MatGetSubMatrices(mat,1,&isrow,&iscol,MAT_INITIAL_MATRIX,&local);CHKERRQ(ierr); 187882094794SBarry Smith Mreuse = *local; 187982094794SBarry Smith ierr = PetscFree(local);CHKERRQ(ierr); 188082094794SBarry Smith } 188182094794SBarry Smith 188282094794SBarry Smith /* 188382094794SBarry Smith m - number of local rows 188482094794SBarry Smith n - number of columns (same on all processors) 188582094794SBarry Smith rstart - first row in new global matrix generated 188682094794SBarry Smith */ 188782094794SBarry Smith ierr = MatGetBlockSize(mat,&bs);CHKERRQ(ierr); 188882094794SBarry Smith ierr = MatGetSize(Mreuse,&m,&n);CHKERRQ(ierr); 188982094794SBarry Smith m = m/bs; 189082094794SBarry Smith n = n/bs; 189182094794SBarry Smith 189282094794SBarry Smith if (call == MAT_INITIAL_MATRIX) { 189382094794SBarry Smith aij = (Mat_SeqBAIJ*)(Mreuse)->data; 189482094794SBarry Smith ii = aij->i; 189582094794SBarry Smith jj = aij->j; 189682094794SBarry Smith 189782094794SBarry Smith /* 189882094794SBarry Smith Determine the number of non-zeros in the diagonal and off-diagonal 189982094794SBarry Smith portions of the matrix in order to do correct preallocation 190082094794SBarry Smith */ 190182094794SBarry Smith 190282094794SBarry Smith /* first get start and end of "diagonal" columns */ 190382094794SBarry Smith if (csize == PETSC_DECIDE) { 190482094794SBarry Smith ierr = ISGetSize(isrow,&mglobal);CHKERRQ(ierr); 190582094794SBarry Smith if (mglobal == n*bs) { /* square matrix */ 190682094794SBarry Smith nlocal = m; 190782094794SBarry Smith } else { 190882094794SBarry Smith nlocal = n/size + ((n % size) > rank); 190982094794SBarry Smith } 191082094794SBarry Smith } else { 191182094794SBarry Smith nlocal = csize/bs; 191282094794SBarry Smith } 191382094794SBarry Smith ierr = MPI_Scan(&nlocal,&rend,1,MPIU_INT,MPI_SUM,comm);CHKERRQ(ierr); 191482094794SBarry Smith rstart = rend - nlocal; 191582094794SBarry Smith if (rank == size - 1 && rend != n) { 191682094794SBarry Smith SETERRQ2(PETSC_ERR_ARG_SIZ,"Local column sizes %D do not add up to total number of columns %D",rend,n); 191782094794SBarry Smith } 191882094794SBarry Smith 191982094794SBarry Smith /* next, compute all the lengths */ 192082094794SBarry Smith ierr = PetscMalloc((2*m+1)*sizeof(PetscInt),&dlens);CHKERRQ(ierr); 192182094794SBarry Smith olens = dlens + m; 192282094794SBarry Smith for (i=0; i<m; i++) { 192382094794SBarry Smith jend = ii[i+1] - ii[i]; 192482094794SBarry Smith olen = 0; 192582094794SBarry Smith dlen = 0; 192682094794SBarry Smith for (j=0; j<jend; j++) { 192782094794SBarry Smith if (*jj < rstart || *jj >= rend) olen++; 192882094794SBarry Smith else dlen++; 192982094794SBarry Smith jj++; 193082094794SBarry Smith } 193182094794SBarry Smith olens[i] = olen; 193282094794SBarry Smith dlens[i] = dlen; 193382094794SBarry Smith } 193482094794SBarry Smith ierr = MatCreate(comm,&M);CHKERRQ(ierr); 193582094794SBarry Smith ierr = MatSetSizes(M,bs*m,bs*nlocal,PETSC_DECIDE,bs*n);CHKERRQ(ierr); 193682094794SBarry Smith ierr = MatSetType(M,((PetscObject)mat)->type_name);CHKERRQ(ierr); 193782094794SBarry Smith ierr = MatMPIBAIJSetPreallocation(M,bs,0,dlens,0,olens);CHKERRQ(ierr); 193882094794SBarry Smith ierr = PetscFree(dlens);CHKERRQ(ierr); 193982094794SBarry Smith } else { 194082094794SBarry Smith PetscInt ml,nl; 194182094794SBarry Smith 194282094794SBarry Smith M = *newmat; 194382094794SBarry Smith ierr = MatGetLocalSize(M,&ml,&nl);CHKERRQ(ierr); 194482094794SBarry Smith if (ml != m) SETERRQ(PETSC_ERR_ARG_SIZ,"Previous matrix must be same size/layout as request"); 194582094794SBarry Smith ierr = MatZeroEntries(M);CHKERRQ(ierr); 194682094794SBarry Smith /* 194782094794SBarry Smith The next two lines are needed so we may call MatSetValues_MPIAIJ() below directly, 194882094794SBarry Smith rather than the slower MatSetValues(). 194982094794SBarry Smith */ 195082094794SBarry Smith M->was_assembled = PETSC_TRUE; 195182094794SBarry Smith M->assembled = PETSC_FALSE; 195282094794SBarry Smith } 195382094794SBarry Smith ierr = MatSetOption(M,MAT_ROW_ORIENTED,PETSC_FALSE);CHKERRQ(ierr); 195482094794SBarry Smith ierr = MatGetOwnershipRange(M,&rstart,&rend);CHKERRQ(ierr); 195582094794SBarry Smith aij = (Mat_SeqBAIJ*)(Mreuse)->data; 195682094794SBarry Smith ii = aij->i; 195782094794SBarry Smith jj = aij->j; 195882094794SBarry Smith aa = aij->a; 195982094794SBarry Smith for (i=0; i<m; i++) { 196082094794SBarry Smith row = rstart/bs + i; 196182094794SBarry Smith nz = ii[i+1] - ii[i]; 196282094794SBarry Smith cwork = jj; jj += nz; 196382094794SBarry Smith vwork = aa; aa += nz; 196482094794SBarry Smith ierr = MatSetValuesBlocked_MPIBAIJ(M,1,&row,nz,cwork,vwork,INSERT_VALUES);CHKERRQ(ierr); 196582094794SBarry Smith } 196682094794SBarry Smith 196782094794SBarry Smith ierr = MatAssemblyBegin(M,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 196882094794SBarry Smith ierr = MatAssemblyEnd(M,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 196982094794SBarry Smith *newmat = M; 197082094794SBarry Smith 197182094794SBarry Smith /* save submatrix used in processor for next request */ 197282094794SBarry Smith if (call == MAT_INITIAL_MATRIX) { 197382094794SBarry Smith ierr = PetscObjectCompose((PetscObject)M,"SubMatrix",(PetscObject)Mreuse);CHKERRQ(ierr); 197482094794SBarry Smith ierr = PetscObjectDereference((PetscObject)Mreuse);CHKERRQ(ierr); 197582094794SBarry Smith } 197682094794SBarry Smith 197782094794SBarry Smith PetscFunctionReturn(0); 197882094794SBarry Smith } 197982094794SBarry Smith 198082094794SBarry Smith #undef __FUNCT__ 198182094794SBarry Smith #define __FUNCT__ "MatPermute_MPIBAIJ" 198282094794SBarry Smith PetscErrorCode MatPermute_MPIBAIJ(Mat A,IS rowp,IS colp,Mat *B) 198382094794SBarry Smith { 198482094794SBarry Smith MPI_Comm comm,pcomm; 198582094794SBarry Smith PetscInt first,local_size,nrows; 198682094794SBarry Smith const PetscInt *rows; 1987dbf0e21dSBarry Smith PetscMPIInt size; 198882094794SBarry Smith IS crowp,growp,irowp,lrowp,lcolp,icolp; 198982094794SBarry Smith PetscErrorCode ierr; 199082094794SBarry Smith 199182094794SBarry Smith PetscFunctionBegin; 199282094794SBarry Smith ierr = PetscObjectGetComm((PetscObject)A,&comm);CHKERRQ(ierr); 199382094794SBarry Smith /* make a collective version of 'rowp' */ 199482094794SBarry Smith ierr = PetscObjectGetComm((PetscObject)rowp,&pcomm);CHKERRQ(ierr); 199582094794SBarry Smith if (pcomm==comm) { 199682094794SBarry Smith crowp = rowp; 199782094794SBarry Smith } else { 199882094794SBarry Smith ierr = ISGetSize(rowp,&nrows);CHKERRQ(ierr); 199982094794SBarry Smith ierr = ISGetIndices(rowp,&rows);CHKERRQ(ierr); 200082094794SBarry Smith ierr = ISCreateGeneral(comm,nrows,rows,&crowp);CHKERRQ(ierr); 200182094794SBarry Smith ierr = ISRestoreIndices(rowp,&rows);CHKERRQ(ierr); 200282094794SBarry Smith } 200382094794SBarry Smith /* collect the global row permutation and invert it */ 200482094794SBarry Smith ierr = ISAllGather(crowp,&growp);CHKERRQ(ierr); 200582094794SBarry Smith ierr = ISSetPermutation(growp);CHKERRQ(ierr); 200682094794SBarry Smith if (pcomm!=comm) { 200782094794SBarry Smith ierr = ISDestroy(crowp);CHKERRQ(ierr); 200882094794SBarry Smith } 200982094794SBarry Smith ierr = ISInvertPermutation(growp,PETSC_DECIDE,&irowp);CHKERRQ(ierr); 201082094794SBarry Smith /* get the local target indices */ 201182094794SBarry Smith ierr = MatGetOwnershipRange(A,&first,PETSC_NULL);CHKERRQ(ierr); 201282094794SBarry Smith ierr = MatGetLocalSize(A,&local_size,PETSC_NULL);CHKERRQ(ierr); 201382094794SBarry Smith ierr = ISGetIndices(irowp,&rows);CHKERRQ(ierr); 201482094794SBarry Smith ierr = ISCreateGeneral(MPI_COMM_SELF,local_size,rows+first,&lrowp);CHKERRQ(ierr); 201582094794SBarry Smith ierr = ISRestoreIndices(irowp,&rows);CHKERRQ(ierr); 201682094794SBarry Smith ierr = ISDestroy(irowp);CHKERRQ(ierr); 201782094794SBarry Smith /* the column permutation is so much easier; 201882094794SBarry Smith make a local version of 'colp' and invert it */ 201982094794SBarry Smith ierr = PetscObjectGetComm((PetscObject)colp,&pcomm);CHKERRQ(ierr); 2020dbf0e21dSBarry Smith ierr = MPI_Comm_size(pcomm,&size);CHKERRQ(ierr); 2021dbf0e21dSBarry Smith if (size==1) { 202282094794SBarry Smith lcolp = colp; 202382094794SBarry Smith } else { 202482094794SBarry Smith ierr = ISGetSize(colp,&nrows);CHKERRQ(ierr); 202582094794SBarry Smith ierr = ISGetIndices(colp,&rows);CHKERRQ(ierr); 202682094794SBarry Smith ierr = ISCreateGeneral(MPI_COMM_SELF,nrows,rows,&lcolp);CHKERRQ(ierr); 202782094794SBarry Smith } 2028dbf0e21dSBarry Smith ierr = ISSetPermutation(lcolp);CHKERRQ(ierr); 202982094794SBarry Smith ierr = ISInvertPermutation(lcolp,PETSC_DECIDE,&icolp);CHKERRQ(ierr); 20304aa3045dSJed Brown ierr = ISSetPermutation(icolp);CHKERRQ(ierr); 2031dbf0e21dSBarry Smith if (size>1) { 203282094794SBarry Smith ierr = ISRestoreIndices(colp,&rows);CHKERRQ(ierr); 203382094794SBarry Smith ierr = ISDestroy(lcolp);CHKERRQ(ierr); 203482094794SBarry Smith } 203582094794SBarry Smith /* now we just get the submatrix */ 20364aa3045dSJed Brown ierr = MatGetSubMatrix_MPIBAIJ_Private(A,lrowp,icolp,local_size,MAT_INITIAL_MATRIX,B);CHKERRQ(ierr); 203782094794SBarry Smith /* clean up */ 203882094794SBarry Smith ierr = ISDestroy(lrowp);CHKERRQ(ierr); 203982094794SBarry Smith ierr = ISDestroy(icolp);CHKERRQ(ierr); 204082094794SBarry Smith PetscFunctionReturn(0); 204182094794SBarry Smith } 204282094794SBarry Smith 20438c7482ecSBarry Smith #undef __FUNCT__ 20448c7482ecSBarry Smith #define __FUNCT__ "MatGetGhosts_MPIBAIJ" 20458c7482ecSBarry Smith PetscErrorCode PETSCMAT_DLLEXPORT MatGetGhosts_MPIBAIJ(Mat mat,PetscInt *nghosts,const PetscInt *ghosts[]) 20468c7482ecSBarry Smith { 20478c7482ecSBarry Smith Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*) mat->data; 20488c7482ecSBarry Smith Mat_SeqBAIJ *B = (Mat_SeqBAIJ*)baij->B->data; 20498c7482ecSBarry Smith 20508c7482ecSBarry Smith PetscFunctionBegin; 20518c7482ecSBarry Smith if (nghosts) { *nghosts = B->nbs;} 20528c7482ecSBarry Smith if (ghosts) {*ghosts = baij->garray;} 20538c7482ecSBarry Smith PetscFunctionReturn(0); 20548c7482ecSBarry Smith } 20558c7482ecSBarry Smith 2056f6d58c54SBarry Smith EXTERN PetscErrorCode CreateColmap_MPIBAIJ_Private(Mat); 2057f6d58c54SBarry Smith 2058f6d58c54SBarry Smith #undef __FUNCT__ 2059f6d58c54SBarry Smith #define __FUNCT__ "MatFDColoringCreate_MPIBAIJ" 2060f6d58c54SBarry Smith /* 2061f6d58c54SBarry Smith This routine is almost identical to MatFDColoringCreate_MPIBAIJ()! 2062f6d58c54SBarry Smith */ 2063f6d58c54SBarry Smith PetscErrorCode MatFDColoringCreate_MPIBAIJ(Mat mat,ISColoring iscoloring,MatFDColoring c) 2064f6d58c54SBarry Smith { 2065f6d58c54SBarry Smith Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 2066f6d58c54SBarry Smith PetscErrorCode ierr; 2067f6d58c54SBarry Smith PetscMPIInt size,*ncolsonproc,*disp,nn; 2068f6d58c54SBarry Smith PetscInt bs,i,n,nrows,j,k,m,*rows = 0,*A_ci,*A_cj,ncols,col; 2069f6d58c54SBarry Smith const PetscInt *is; 2070f6d58c54SBarry Smith PetscInt nis = iscoloring->n,nctot,*cols,*B_ci,*B_cj; 2071f6d58c54SBarry Smith PetscInt *rowhit,M,cstart,cend,colb; 2072f6d58c54SBarry Smith PetscInt *columnsforrow,l; 2073f6d58c54SBarry Smith IS *isa; 2074f6d58c54SBarry Smith PetscTruth done,flg; 2075f6d58c54SBarry Smith ISLocalToGlobalMapping map = mat->bmapping; 2076f6d58c54SBarry Smith PetscInt *ltog = (map ? map->indices : (PetscInt*) PETSC_NULL) ,ctype=c->ctype; 2077f6d58c54SBarry Smith 2078f6d58c54SBarry Smith PetscFunctionBegin; 2079f6d58c54SBarry Smith if (!mat->assembled) { 2080f6d58c54SBarry Smith SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Matrix must be assembled first; MatAssemblyBegin/End();"); 2081f6d58c54SBarry Smith } 2082f6d58c54SBarry Smith if (ctype == IS_COLORING_GHOSTED && !map) SETERRQ(PETSC_ERR_ARG_INCOMP,"When using ghosted differencing matrix must have local to global mapping provided with MatSetLocalToGlobalMappingBlock"); 2083f6d58c54SBarry Smith 2084f6d58c54SBarry Smith ierr = ISColoringGetIS(iscoloring,PETSC_IGNORE,&isa);CHKERRQ(ierr); 2085f6d58c54SBarry Smith 2086f6d58c54SBarry Smith ierr = MatGetBlockSize(mat,&bs);CHKERRQ(ierr); 2087f6d58c54SBarry Smith M = mat->rmap->n/bs; 2088f6d58c54SBarry Smith cstart = mat->cmap->rstart/bs; 2089f6d58c54SBarry Smith cend = mat->cmap->rend/bs; 2090f6d58c54SBarry Smith c->M = mat->rmap->N/bs; /* set the global rows and columns and local rows */ 2091f6d58c54SBarry Smith c->N = mat->cmap->N/bs; 2092f6d58c54SBarry Smith c->m = mat->rmap->n/bs; 2093f6d58c54SBarry Smith c->rstart = mat->rmap->rstart/bs; 2094f6d58c54SBarry Smith 2095f6d58c54SBarry Smith c->ncolors = nis; 2096f6d58c54SBarry Smith ierr = PetscMalloc(nis*sizeof(PetscInt),&c->ncolumns);CHKERRQ(ierr); 2097f6d58c54SBarry Smith ierr = PetscMalloc(nis*sizeof(PetscInt*),&c->columns);CHKERRQ(ierr); 2098f6d58c54SBarry Smith ierr = PetscMalloc(nis*sizeof(PetscInt),&c->nrows);CHKERRQ(ierr); 2099f6d58c54SBarry Smith ierr = PetscMalloc(nis*sizeof(PetscInt*),&c->rows);CHKERRQ(ierr); 2100f6d58c54SBarry Smith ierr = PetscMalloc(nis*sizeof(PetscInt*),&c->columnsforrow);CHKERRQ(ierr); 2101f6d58c54SBarry Smith ierr = PetscLogObjectMemory(c,5*nis*sizeof(PetscInt));CHKERRQ(ierr); 2102f6d58c54SBarry Smith 2103f6d58c54SBarry Smith /* Allow access to data structures of local part of matrix */ 2104f6d58c54SBarry Smith if (!baij->colmap) { 2105f6d58c54SBarry Smith ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 2106f6d58c54SBarry Smith } 2107f6d58c54SBarry Smith ierr = MatGetColumnIJ(baij->A,0,PETSC_FALSE,PETSC_FALSE,&ncols,&A_ci,&A_cj,&done);CHKERRQ(ierr); 2108f6d58c54SBarry Smith ierr = MatGetColumnIJ(baij->B,0,PETSC_FALSE,PETSC_FALSE,&ncols,&B_ci,&B_cj,&done);CHKERRQ(ierr); 2109f6d58c54SBarry Smith 2110f6d58c54SBarry Smith ierr = PetscMalloc((M+1)*sizeof(PetscInt),&rowhit);CHKERRQ(ierr); 2111f6d58c54SBarry Smith ierr = PetscMalloc((M+1)*sizeof(PetscInt),&columnsforrow);CHKERRQ(ierr); 2112f6d58c54SBarry Smith 2113f6d58c54SBarry Smith for (i=0; i<nis; i++) { 2114f6d58c54SBarry Smith ierr = ISGetLocalSize(isa[i],&n);CHKERRQ(ierr); 2115f6d58c54SBarry Smith ierr = ISGetIndices(isa[i],&is);CHKERRQ(ierr); 2116f6d58c54SBarry Smith c->ncolumns[i] = n; 2117f6d58c54SBarry Smith if (n) { 2118f6d58c54SBarry Smith ierr = PetscMalloc(n*sizeof(PetscInt),&c->columns[i]);CHKERRQ(ierr); 2119f6d58c54SBarry Smith ierr = PetscLogObjectMemory(c,n*sizeof(PetscInt));CHKERRQ(ierr); 2120f6d58c54SBarry Smith ierr = PetscMemcpy(c->columns[i],is,n*sizeof(PetscInt));CHKERRQ(ierr); 2121f6d58c54SBarry Smith } else { 2122f6d58c54SBarry Smith c->columns[i] = 0; 2123f6d58c54SBarry Smith } 2124f6d58c54SBarry Smith 2125f6d58c54SBarry Smith if (ctype == IS_COLORING_GLOBAL){ 2126f6d58c54SBarry Smith /* Determine the total (parallel) number of columns of this color */ 2127f6d58c54SBarry Smith ierr = MPI_Comm_size(((PetscObject)mat)->comm,&size);CHKERRQ(ierr); 2128f6d58c54SBarry Smith ierr = PetscMalloc(2*size*sizeof(PetscInt*),&ncolsonproc);CHKERRQ(ierr); 2129f6d58c54SBarry Smith disp = ncolsonproc + size; 2130f6d58c54SBarry Smith 2131f6d58c54SBarry Smith nn = PetscMPIIntCast(n); 2132f6d58c54SBarry Smith ierr = MPI_Allgather(&nn,1,MPI_INT,ncolsonproc,1,MPI_INT,((PetscObject)mat)->comm);CHKERRQ(ierr); 2133f6d58c54SBarry Smith nctot = 0; for (j=0; j<size; j++) {nctot += ncolsonproc[j];} 2134f6d58c54SBarry Smith if (!nctot) { 2135f6d58c54SBarry Smith ierr = PetscInfo(mat,"Coloring of matrix has some unneeded colors with no corresponding rows\n");CHKERRQ(ierr); 2136f6d58c54SBarry Smith } 2137f6d58c54SBarry Smith 2138f6d58c54SBarry Smith disp[0] = 0; 2139f6d58c54SBarry Smith for (j=1; j<size; j++) { 2140f6d58c54SBarry Smith disp[j] = disp[j-1] + ncolsonproc[j-1]; 2141f6d58c54SBarry Smith } 2142f6d58c54SBarry Smith 2143f6d58c54SBarry Smith /* Get complete list of columns for color on each processor */ 2144f6d58c54SBarry Smith ierr = PetscMalloc((nctot+1)*sizeof(PetscInt),&cols);CHKERRQ(ierr); 2145f6d58c54SBarry Smith ierr = MPI_Allgatherv((void*)is,n,MPIU_INT,cols,ncolsonproc,disp,MPIU_INT,((PetscObject)mat)->comm);CHKERRQ(ierr); 2146f6d58c54SBarry Smith ierr = PetscFree(ncolsonproc);CHKERRQ(ierr); 2147f6d58c54SBarry Smith } else if (ctype == IS_COLORING_GHOSTED){ 2148f6d58c54SBarry Smith /* Determine local number of columns of this color on this process, including ghost points */ 2149f6d58c54SBarry Smith nctot = n; 2150f6d58c54SBarry Smith ierr = PetscMalloc((nctot+1)*sizeof(PetscInt),&cols);CHKERRQ(ierr); 2151f6d58c54SBarry Smith ierr = PetscMemcpy(cols,is,n*sizeof(PetscInt));CHKERRQ(ierr); 2152f6d58c54SBarry Smith } else { 2153f6d58c54SBarry Smith SETERRQ(PETSC_ERR_SUP,"Not provided for this MatFDColoring type"); 2154f6d58c54SBarry Smith } 2155f6d58c54SBarry Smith 2156f6d58c54SBarry Smith /* 2157f6d58c54SBarry Smith Mark all rows affect by these columns 2158f6d58c54SBarry Smith */ 2159f6d58c54SBarry Smith /* Temporary option to allow for debugging/testing */ 2160f6d58c54SBarry Smith flg = PETSC_FALSE; 2161f6d58c54SBarry Smith ierr = PetscOptionsGetTruth(PETSC_NULL,"-matfdcoloring_slow",&flg,PETSC_NULL);CHKERRQ(ierr); 2162f6d58c54SBarry Smith if (!flg) {/*-----------------------------------------------------------------------------*/ 2163f6d58c54SBarry Smith /* crude, fast version */ 2164f6d58c54SBarry Smith ierr = PetscMemzero(rowhit,M*sizeof(PetscInt));CHKERRQ(ierr); 2165f6d58c54SBarry Smith /* loop over columns*/ 2166f6d58c54SBarry Smith for (j=0; j<nctot; j++) { 2167f6d58c54SBarry Smith if (ctype == IS_COLORING_GHOSTED) { 2168f6d58c54SBarry Smith col = ltog[cols[j]]; 2169f6d58c54SBarry Smith } else { 2170f6d58c54SBarry Smith col = cols[j]; 2171f6d58c54SBarry Smith } 2172f6d58c54SBarry Smith if (col >= cstart && col < cend) { 2173f6d58c54SBarry Smith /* column is in diagonal block of matrix */ 2174f6d58c54SBarry Smith rows = A_cj + A_ci[col-cstart]; 2175f6d58c54SBarry Smith m = A_ci[col-cstart+1] - A_ci[col-cstart]; 2176f6d58c54SBarry Smith } else { 2177f6d58c54SBarry Smith #if defined (PETSC_USE_CTABLE) 2178f6d58c54SBarry Smith ierr = PetscTableFind(baij->colmap,col+1,&colb);CHKERRQ(ierr) 2179f6d58c54SBarry Smith colb --; 2180f6d58c54SBarry Smith #else 2181f6d58c54SBarry Smith colb = baij->colmap[col] - 1; 2182f6d58c54SBarry Smith #endif 2183f6d58c54SBarry Smith if (colb == -1) { 2184f6d58c54SBarry Smith m = 0; 2185f6d58c54SBarry Smith } else { 2186f6d58c54SBarry Smith colb = colb/bs; 2187f6d58c54SBarry Smith rows = B_cj + B_ci[colb]; 2188f6d58c54SBarry Smith m = B_ci[colb+1] - B_ci[colb]; 2189f6d58c54SBarry Smith } 2190f6d58c54SBarry Smith } 2191f6d58c54SBarry Smith /* loop over columns marking them in rowhit */ 2192f6d58c54SBarry Smith for (k=0; k<m; k++) { 2193f6d58c54SBarry Smith rowhit[*rows++] = col + 1; 2194f6d58c54SBarry Smith } 2195f6d58c54SBarry Smith } 2196f6d58c54SBarry Smith 2197f6d58c54SBarry Smith /* count the number of hits */ 2198f6d58c54SBarry Smith nrows = 0; 2199f6d58c54SBarry Smith for (j=0; j<M; j++) { 2200f6d58c54SBarry Smith if (rowhit[j]) nrows++; 2201f6d58c54SBarry Smith } 2202f6d58c54SBarry Smith c->nrows[i] = nrows; 2203f6d58c54SBarry Smith ierr = PetscMalloc((nrows+1)*sizeof(PetscInt),&c->rows[i]);CHKERRQ(ierr); 2204f6d58c54SBarry Smith ierr = PetscMalloc((nrows+1)*sizeof(PetscInt),&c->columnsforrow[i]);CHKERRQ(ierr); 2205f6d58c54SBarry Smith ierr = PetscLogObjectMemory(c,2*(nrows+1)*sizeof(PetscInt));CHKERRQ(ierr); 2206f6d58c54SBarry Smith nrows = 0; 2207f6d58c54SBarry Smith for (j=0; j<M; j++) { 2208f6d58c54SBarry Smith if (rowhit[j]) { 2209f6d58c54SBarry Smith c->rows[i][nrows] = j; 2210f6d58c54SBarry Smith c->columnsforrow[i][nrows] = rowhit[j] - 1; 2211f6d58c54SBarry Smith nrows++; 2212f6d58c54SBarry Smith } 2213f6d58c54SBarry Smith } 2214f6d58c54SBarry Smith } else {/*-------------------------------------------------------------------------------*/ 2215f6d58c54SBarry Smith /* slow version, using rowhit as a linked list */ 2216f6d58c54SBarry Smith PetscInt currentcol,fm,mfm; 2217f6d58c54SBarry Smith rowhit[M] = M; 2218f6d58c54SBarry Smith nrows = 0; 2219f6d58c54SBarry Smith /* loop over columns*/ 2220f6d58c54SBarry Smith for (j=0; j<nctot; j++) { 2221f6d58c54SBarry Smith if (ctype == IS_COLORING_GHOSTED) { 2222f6d58c54SBarry Smith col = ltog[cols[j]]; 2223f6d58c54SBarry Smith } else { 2224f6d58c54SBarry Smith col = cols[j]; 2225f6d58c54SBarry Smith } 2226f6d58c54SBarry Smith if (col >= cstart && col < cend) { 2227f6d58c54SBarry Smith /* column is in diagonal block of matrix */ 2228f6d58c54SBarry Smith rows = A_cj + A_ci[col-cstart]; 2229f6d58c54SBarry Smith m = A_ci[col-cstart+1] - A_ci[col-cstart]; 2230f6d58c54SBarry Smith } else { 2231f6d58c54SBarry Smith #if defined (PETSC_USE_CTABLE) 2232f6d58c54SBarry Smith ierr = PetscTableFind(baij->colmap,col+1,&colb);CHKERRQ(ierr); 2233f6d58c54SBarry Smith colb --; 2234f6d58c54SBarry Smith #else 2235f6d58c54SBarry Smith colb = baij->colmap[col] - 1; 2236f6d58c54SBarry Smith #endif 2237f6d58c54SBarry Smith if (colb == -1) { 2238f6d58c54SBarry Smith m = 0; 2239f6d58c54SBarry Smith } else { 2240f6d58c54SBarry Smith colb = colb/bs; 2241f6d58c54SBarry Smith rows = B_cj + B_ci[colb]; 2242f6d58c54SBarry Smith m = B_ci[colb+1] - B_ci[colb]; 2243f6d58c54SBarry Smith } 2244f6d58c54SBarry Smith } 2245f6d58c54SBarry Smith 2246f6d58c54SBarry Smith /* loop over columns marking them in rowhit */ 2247f6d58c54SBarry Smith fm = M; /* fm points to first entry in linked list */ 2248f6d58c54SBarry Smith for (k=0; k<m; k++) { 2249f6d58c54SBarry Smith currentcol = *rows++; 2250f6d58c54SBarry Smith /* is it already in the list? */ 2251f6d58c54SBarry Smith do { 2252f6d58c54SBarry Smith mfm = fm; 2253f6d58c54SBarry Smith fm = rowhit[fm]; 2254f6d58c54SBarry Smith } while (fm < currentcol); 2255f6d58c54SBarry Smith /* not in list so add it */ 2256f6d58c54SBarry Smith if (fm != currentcol) { 2257f6d58c54SBarry Smith nrows++; 2258f6d58c54SBarry Smith columnsforrow[currentcol] = col; 2259f6d58c54SBarry Smith /* next three lines insert new entry into linked list */ 2260f6d58c54SBarry Smith rowhit[mfm] = currentcol; 2261f6d58c54SBarry Smith rowhit[currentcol] = fm; 2262f6d58c54SBarry Smith fm = currentcol; 2263f6d58c54SBarry Smith /* fm points to present position in list since we know the columns are sorted */ 2264f6d58c54SBarry Smith } else { 2265f6d58c54SBarry Smith SETERRQ(PETSC_ERR_PLIB,"Invalid coloring of matrix detected"); 2266f6d58c54SBarry Smith } 2267f6d58c54SBarry Smith } 2268f6d58c54SBarry Smith } 2269f6d58c54SBarry Smith c->nrows[i] = nrows; 2270f6d58c54SBarry Smith ierr = PetscMalloc((nrows+1)*sizeof(PetscInt),&c->rows[i]);CHKERRQ(ierr); 2271f6d58c54SBarry Smith ierr = PetscMalloc((nrows+1)*sizeof(PetscInt),&c->columnsforrow[i]);CHKERRQ(ierr); 2272f6d58c54SBarry Smith ierr = PetscLogObjectMemory(c,(nrows+1)*sizeof(PetscInt));CHKERRQ(ierr); 2273f6d58c54SBarry Smith /* now store the linked list of rows into c->rows[i] */ 2274f6d58c54SBarry Smith nrows = 0; 2275f6d58c54SBarry Smith fm = rowhit[M]; 2276f6d58c54SBarry Smith do { 2277f6d58c54SBarry Smith c->rows[i][nrows] = fm; 2278f6d58c54SBarry Smith c->columnsforrow[i][nrows++] = columnsforrow[fm]; 2279f6d58c54SBarry Smith fm = rowhit[fm]; 2280f6d58c54SBarry Smith } while (fm < M); 2281f6d58c54SBarry Smith } /* ---------------------------------------------------------------------------------------*/ 2282f6d58c54SBarry Smith ierr = PetscFree(cols);CHKERRQ(ierr); 2283f6d58c54SBarry Smith } 2284f6d58c54SBarry Smith 2285f6d58c54SBarry Smith /* Optimize by adding the vscale, and scaleforrow[][] fields */ 2286f6d58c54SBarry Smith /* 2287f6d58c54SBarry Smith vscale will contain the "diagonal" on processor scalings followed by the off processor 2288f6d58c54SBarry Smith */ 2289f6d58c54SBarry Smith if (ctype == IS_COLORING_GLOBAL) { 2290f6d58c54SBarry Smith PetscInt *garray; 2291f6d58c54SBarry Smith ierr = PetscMalloc(baij->B->cmap->n*sizeof(PetscInt),&garray);CHKERRQ(ierr); 2292f6d58c54SBarry Smith for (i=0; i<baij->B->cmap->n/bs; i++) { 2293f6d58c54SBarry Smith for (j=0; j<bs; j++) { 2294f6d58c54SBarry Smith garray[i*bs+j] = bs*baij->garray[i]+j; 2295f6d58c54SBarry Smith } 2296f6d58c54SBarry Smith } 2297f6d58c54SBarry Smith ierr = VecCreateGhost(((PetscObject)mat)->comm,baij->A->rmap->n,PETSC_DETERMINE,baij->B->cmap->n,garray,&c->vscale);CHKERRQ(ierr); 2298f6d58c54SBarry Smith ierr = PetscFree(garray);CHKERRQ(ierr); 2299f6d58c54SBarry Smith CHKMEMQ; 2300f6d58c54SBarry Smith ierr = PetscMalloc(c->ncolors*sizeof(PetscInt*),&c->vscaleforrow);CHKERRQ(ierr); 2301f6d58c54SBarry Smith for (k=0; k<c->ncolors; k++) { 2302f6d58c54SBarry Smith ierr = PetscMalloc((c->nrows[k]+1)*sizeof(PetscInt),&c->vscaleforrow[k]);CHKERRQ(ierr); 2303f6d58c54SBarry Smith for (l=0; l<c->nrows[k]; l++) { 2304f6d58c54SBarry Smith col = c->columnsforrow[k][l]; 2305f6d58c54SBarry Smith if (col >= cstart && col < cend) { 2306f6d58c54SBarry Smith /* column is in diagonal block of matrix */ 2307f6d58c54SBarry Smith colb = col - cstart; 2308f6d58c54SBarry Smith } else { 2309f6d58c54SBarry Smith /* column is in "off-processor" part */ 2310f6d58c54SBarry Smith #if defined (PETSC_USE_CTABLE) 2311f6d58c54SBarry Smith ierr = PetscTableFind(baij->colmap,col+1,&colb);CHKERRQ(ierr); 2312f6d58c54SBarry Smith colb --; 2313f6d58c54SBarry Smith #else 2314f6d58c54SBarry Smith colb = baij->colmap[col] - 1; 2315f6d58c54SBarry Smith #endif 2316f6d58c54SBarry Smith colb = colb/bs; 2317f6d58c54SBarry Smith colb += cend - cstart; 2318f6d58c54SBarry Smith } 2319f6d58c54SBarry Smith c->vscaleforrow[k][l] = colb; 2320f6d58c54SBarry Smith } 2321f6d58c54SBarry Smith } 2322f6d58c54SBarry Smith } else if (ctype == IS_COLORING_GHOSTED) { 2323f6d58c54SBarry Smith /* Get gtol mapping */ 2324f6d58c54SBarry Smith PetscInt N = mat->cmap->N, *gtol; 2325f6d58c54SBarry Smith ierr = PetscMalloc((N+1)*sizeof(PetscInt),>ol);CHKERRQ(ierr); 2326f6d58c54SBarry Smith for (i=0; i<N; i++) gtol[i] = -1; 2327f6d58c54SBarry Smith for (i=0; i<map->n; i++) gtol[ltog[i]] = i; 2328f6d58c54SBarry Smith 2329f6d58c54SBarry Smith c->vscale = 0; /* will be created in MatFDColoringApply() */ 2330f6d58c54SBarry Smith ierr = PetscMalloc(c->ncolors*sizeof(PetscInt*),&c->vscaleforrow);CHKERRQ(ierr); 2331f6d58c54SBarry Smith for (k=0; k<c->ncolors; k++) { 2332f6d58c54SBarry Smith ierr = PetscMalloc((c->nrows[k]+1)*sizeof(PetscInt),&c->vscaleforrow[k]);CHKERRQ(ierr); 2333f6d58c54SBarry Smith for (l=0; l<c->nrows[k]; l++) { 2334f6d58c54SBarry Smith col = c->columnsforrow[k][l]; /* global column index */ 2335f6d58c54SBarry Smith c->vscaleforrow[k][l] = gtol[col]; /* local column index */ 2336f6d58c54SBarry Smith } 2337f6d58c54SBarry Smith } 2338f6d58c54SBarry Smith ierr = PetscFree(gtol);CHKERRQ(ierr); 2339f6d58c54SBarry Smith } 2340f6d58c54SBarry Smith ierr = ISColoringRestoreIS(iscoloring,&isa);CHKERRQ(ierr); 2341f6d58c54SBarry Smith 2342f6d58c54SBarry Smith ierr = PetscFree(rowhit);CHKERRQ(ierr); 2343f6d58c54SBarry Smith ierr = PetscFree(columnsforrow);CHKERRQ(ierr); 2344f6d58c54SBarry Smith ierr = MatRestoreColumnIJ(baij->A,0,PETSC_FALSE,PETSC_FALSE,&ncols,&A_ci,&A_cj,&done);CHKERRQ(ierr); 2345f6d58c54SBarry Smith ierr = MatRestoreColumnIJ(baij->B,0,PETSC_FALSE,PETSC_FALSE,&ncols,&B_ci,&B_cj,&done);CHKERRQ(ierr); 2346f6d58c54SBarry Smith CHKMEMQ; 2347f6d58c54SBarry Smith PetscFunctionReturn(0); 2348f6d58c54SBarry Smith } 2349f6d58c54SBarry Smith 2350f6d58c54SBarry Smith #undef __FUNCT__ 2351f6d58c54SBarry Smith #define __FUNCT__ "MatGetSeqNonzerostructure_MPIBAIJ" 2352f6d58c54SBarry Smith PetscErrorCode MatGetSeqNonzerostructure_MPIBAIJ(Mat A,Mat *newmat) 2353f6d58c54SBarry Smith { 2354f6d58c54SBarry Smith Mat B; 2355f6d58c54SBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 2356f6d58c54SBarry Smith Mat_SeqBAIJ *ad = (Mat_SeqBAIJ*)a->A->data,*bd = (Mat_SeqBAIJ*)a->B->data; 2357f6d58c54SBarry Smith Mat_SeqAIJ *b; 2358f6d58c54SBarry Smith PetscErrorCode ierr; 2359f6d58c54SBarry Smith PetscMPIInt size,rank,*recvcounts = 0,*displs = 0; 2360f6d58c54SBarry Smith PetscInt sendcount,i,*rstarts = A->rmap->range,n,cnt,j,bs = A->rmap->bs; 2361f6d58c54SBarry Smith PetscInt m,*garray = a->garray,*lens,*jsendbuf,*a_jsendbuf,*b_jsendbuf; 2362f6d58c54SBarry Smith 2363f6d58c54SBarry Smith PetscFunctionBegin; 2364f6d58c54SBarry Smith ierr = MPI_Comm_size(((PetscObject)A)->comm,&size);CHKERRQ(ierr); 2365f6d58c54SBarry Smith ierr = MPI_Comm_rank(((PetscObject)A)->comm,&rank);CHKERRQ(ierr); 2366f6d58c54SBarry Smith 2367f6d58c54SBarry Smith /* ---------------------------------------------------------------- 2368f6d58c54SBarry Smith Tell every processor the number of nonzeros per row 2369f6d58c54SBarry Smith */ 2370f6d58c54SBarry Smith ierr = PetscMalloc((A->rmap->N/bs)*sizeof(PetscInt),&lens);CHKERRQ(ierr); 2371f6d58c54SBarry Smith for (i=A->rmap->rstart/bs; i<A->rmap->rend/bs; i++) { 2372f6d58c54SBarry Smith lens[i] = ad->i[i-A->rmap->rstart/bs+1] - ad->i[i-A->rmap->rstart/bs] + bd->i[i-A->rmap->rstart/bs+1] - bd->i[i-A->rmap->rstart/bs]; 2373f6d58c54SBarry Smith } 2374f6d58c54SBarry Smith sendcount = A->rmap->rend/bs - A->rmap->rstart/bs; 2375f6d58c54SBarry Smith ierr = PetscMalloc(2*size*sizeof(PetscMPIInt),&recvcounts);CHKERRQ(ierr); 2376f6d58c54SBarry Smith displs = recvcounts + size; 2377f6d58c54SBarry Smith for (i=0; i<size; i++) { 2378f6d58c54SBarry Smith recvcounts[i] = A->rmap->range[i+1]/bs - A->rmap->range[i]/bs; 2379f6d58c54SBarry Smith displs[i] = A->rmap->range[i]/bs; 2380f6d58c54SBarry Smith } 2381f6d58c54SBarry Smith #if defined(PETSC_HAVE_MPI_IN_PLACE) 2382f6d58c54SBarry Smith ierr = MPI_Allgatherv(MPI_IN_PLACE,0,MPI_DATATYPE_NULL,lens,recvcounts,displs,MPIU_INT,((PetscObject)A)->comm);CHKERRQ(ierr); 2383f6d58c54SBarry Smith #else 2384f6d58c54SBarry Smith ierr = MPI_Allgatherv(lens+A->rmap->rstart/bs,sendcount,MPIU_INT,lens,recvcounts,displs,MPIU_INT,((PetscObject)A)->comm);CHKERRQ(ierr); 2385f6d58c54SBarry Smith #endif 2386f6d58c54SBarry Smith /* --------------------------------------------------------------- 2387f6d58c54SBarry Smith Create the sequential matrix of the same type as the local block diagonal 2388f6d58c54SBarry Smith */ 2389f6d58c54SBarry Smith ierr = MatCreate(PETSC_COMM_SELF,&B);CHKERRQ(ierr); 2390f6d58c54SBarry Smith ierr = MatSetSizes(B,A->rmap->N/bs,A->cmap->N/bs,PETSC_DETERMINE,PETSC_DETERMINE);CHKERRQ(ierr); 2391f6d58c54SBarry Smith ierr = MatSetType(B,MATSEQAIJ);CHKERRQ(ierr); 2392f6d58c54SBarry Smith ierr = MatSeqAIJSetPreallocation(B,0,lens);CHKERRQ(ierr); 2393f6d58c54SBarry Smith b = (Mat_SeqAIJ *)B->data; 2394f6d58c54SBarry Smith 2395f6d58c54SBarry Smith /*-------------------------------------------------------------------- 2396f6d58c54SBarry Smith Copy my part of matrix column indices over 2397f6d58c54SBarry Smith */ 2398f6d58c54SBarry Smith sendcount = ad->nz + bd->nz; 2399f6d58c54SBarry Smith jsendbuf = b->j + b->i[rstarts[rank]/bs]; 2400f6d58c54SBarry Smith a_jsendbuf = ad->j; 2401f6d58c54SBarry Smith b_jsendbuf = bd->j; 2402f6d58c54SBarry Smith n = A->rmap->rend/bs - A->rmap->rstart/bs; 2403f6d58c54SBarry Smith cnt = 0; 2404f6d58c54SBarry Smith for (i=0; i<n; i++) { 2405f6d58c54SBarry Smith 2406f6d58c54SBarry Smith /* put in lower diagonal portion */ 2407f6d58c54SBarry Smith m = bd->i[i+1] - bd->i[i]; 2408f6d58c54SBarry Smith while (m > 0) { 2409f6d58c54SBarry Smith /* is it above diagonal (in bd (compressed) numbering) */ 2410f6d58c54SBarry Smith if (garray[*b_jsendbuf] > A->rmap->rstart/bs + i) break; 2411f6d58c54SBarry Smith jsendbuf[cnt++] = garray[*b_jsendbuf++]; 2412f6d58c54SBarry Smith m--; 2413f6d58c54SBarry Smith } 2414f6d58c54SBarry Smith 2415f6d58c54SBarry Smith /* put in diagonal portion */ 2416f6d58c54SBarry Smith for (j=ad->i[i]; j<ad->i[i+1]; j++) { 2417f6d58c54SBarry Smith jsendbuf[cnt++] = A->rmap->rstart/bs + *a_jsendbuf++; 2418f6d58c54SBarry Smith } 2419f6d58c54SBarry Smith 2420f6d58c54SBarry Smith /* put in upper diagonal portion */ 2421f6d58c54SBarry Smith while (m-- > 0) { 2422f6d58c54SBarry Smith jsendbuf[cnt++] = garray[*b_jsendbuf++]; 2423f6d58c54SBarry Smith } 2424f6d58c54SBarry Smith } 2425f6d58c54SBarry Smith if (cnt != sendcount) SETERRQ2(PETSC_ERR_PLIB,"Corrupted PETSc matrix: nz given %D actual nz %D",sendcount,cnt); 2426f6d58c54SBarry Smith 2427f6d58c54SBarry Smith /*-------------------------------------------------------------------- 2428f6d58c54SBarry Smith Gather all column indices to all processors 2429f6d58c54SBarry Smith */ 2430f6d58c54SBarry Smith for (i=0; i<size; i++) { 2431f6d58c54SBarry Smith recvcounts[i] = 0; 2432f6d58c54SBarry Smith for (j=A->rmap->range[i]/bs; j<A->rmap->range[i+1]/bs; j++) { 2433f6d58c54SBarry Smith recvcounts[i] += lens[j]; 2434f6d58c54SBarry Smith } 2435f6d58c54SBarry Smith } 2436f6d58c54SBarry Smith displs[0] = 0; 2437f6d58c54SBarry Smith for (i=1; i<size; i++) { 2438f6d58c54SBarry Smith displs[i] = displs[i-1] + recvcounts[i-1]; 2439f6d58c54SBarry Smith } 2440f6d58c54SBarry Smith #if defined(PETSC_HAVE_MPI_IN_PLACE) 2441f6d58c54SBarry Smith ierr = MPI_Allgatherv(MPI_IN_PLACE,0,MPI_DATATYPE_NULL,b->j,recvcounts,displs,MPIU_INT,((PetscObject)A)->comm);CHKERRQ(ierr); 2442f6d58c54SBarry Smith #else 2443f6d58c54SBarry Smith ierr = MPI_Allgatherv(jsendbuf,sendcount,MPIU_INT,b->j,recvcounts,displs,MPIU_INT,((PetscObject)A)->comm);CHKERRQ(ierr); 2444f6d58c54SBarry Smith #endif 2445f6d58c54SBarry Smith /*-------------------------------------------------------------------- 2446f6d58c54SBarry Smith Assemble the matrix into useable form (note numerical values not yet set) 2447f6d58c54SBarry Smith */ 2448f6d58c54SBarry Smith /* set the b->ilen (length of each row) values */ 2449f6d58c54SBarry Smith ierr = PetscMemcpy(b->ilen,lens,(A->rmap->N/bs)*sizeof(PetscInt));CHKERRQ(ierr); 2450f6d58c54SBarry Smith /* set the b->i indices */ 2451f6d58c54SBarry Smith b->i[0] = 0; 2452f6d58c54SBarry Smith for (i=1; i<=A->rmap->N/bs; i++) { 2453f6d58c54SBarry Smith b->i[i] = b->i[i-1] + lens[i-1]; 2454f6d58c54SBarry Smith } 2455f6d58c54SBarry Smith ierr = PetscFree(lens);CHKERRQ(ierr); 2456f6d58c54SBarry Smith ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 2457f6d58c54SBarry Smith ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 2458f6d58c54SBarry Smith ierr = PetscFree(recvcounts);CHKERRQ(ierr); 2459f6d58c54SBarry Smith 2460f6d58c54SBarry Smith if (A->symmetric){ 2461f6d58c54SBarry Smith ierr = MatSetOption(B,MAT_SYMMETRIC,PETSC_TRUE);CHKERRQ(ierr); 2462f6d58c54SBarry Smith } else if (A->hermitian) { 2463f6d58c54SBarry Smith ierr = MatSetOption(B,MAT_HERMITIAN,PETSC_TRUE);CHKERRQ(ierr); 2464f6d58c54SBarry Smith } else if (A->structurally_symmetric) { 2465f6d58c54SBarry Smith ierr = MatSetOption(B,MAT_STRUCTURALLY_SYMMETRIC,PETSC_TRUE);CHKERRQ(ierr); 2466f6d58c54SBarry Smith } 2467f6d58c54SBarry Smith *newmat = B; 2468f6d58c54SBarry Smith PetscFunctionReturn(0); 2469f6d58c54SBarry Smith } 2470f6d58c54SBarry Smith 2471*b1a666ecSBarry Smith #undef __FUNCT__ 2472*b1a666ecSBarry Smith #define __FUNCT__ "MatSOR_MPIBAIJ" 2473*b1a666ecSBarry Smith PetscErrorCode MatSOR_MPIBAIJ(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx) 2474*b1a666ecSBarry Smith { 2475*b1a666ecSBarry Smith Mat_MPIBAIJ *mat = (Mat_MPIBAIJ*)matin->data; 2476*b1a666ecSBarry Smith PetscErrorCode ierr; 2477*b1a666ecSBarry Smith Vec bb1 = 0; 2478*b1a666ecSBarry Smith 2479*b1a666ecSBarry Smith PetscFunctionBegin; 2480*b1a666ecSBarry Smith if (its > 1 || ~flag & SOR_ZERO_INITIAL_GUESS) { 2481*b1a666ecSBarry Smith ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr); 2482*b1a666ecSBarry Smith } 2483*b1a666ecSBarry Smith 2484*b1a666ecSBarry Smith if (flag == SOR_APPLY_UPPER) { 2485*b1a666ecSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr); 2486*b1a666ecSBarry Smith PetscFunctionReturn(0); 2487*b1a666ecSBarry Smith } 2488*b1a666ecSBarry Smith 2489*b1a666ecSBarry Smith if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP){ 2490*b1a666ecSBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 2491*b1a666ecSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr); 2492*b1a666ecSBarry Smith its--; 2493*b1a666ecSBarry Smith } 2494*b1a666ecSBarry Smith 2495*b1a666ecSBarry Smith while (its--) { 2496*b1a666ecSBarry Smith ierr = VecScatterBegin(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 2497*b1a666ecSBarry Smith ierr = VecScatterEnd(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 2498*b1a666ecSBarry Smith 2499*b1a666ecSBarry Smith /* update rhs: bb1 = bb - B*x */ 2500*b1a666ecSBarry Smith ierr = VecScale(mat->lvec,-1.0);CHKERRQ(ierr); 2501*b1a666ecSBarry Smith ierr = (*mat->B->ops->multadd)(mat->B,mat->lvec,bb,bb1);CHKERRQ(ierr); 2502*b1a666ecSBarry Smith 2503*b1a666ecSBarry Smith /* local sweep */ 2504*b1a666ecSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,1,xx);CHKERRQ(ierr); 2505*b1a666ecSBarry Smith } 2506*b1a666ecSBarry Smith } else if (flag & SOR_LOCAL_FORWARD_SWEEP){ 2507*b1a666ecSBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 2508*b1a666ecSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr); 2509*b1a666ecSBarry Smith its--; 2510*b1a666ecSBarry Smith } 2511*b1a666ecSBarry Smith while (its--) { 2512*b1a666ecSBarry Smith ierr = VecScatterBegin(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 2513*b1a666ecSBarry Smith ierr = VecScatterEnd(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 2514*b1a666ecSBarry Smith 2515*b1a666ecSBarry Smith /* update rhs: bb1 = bb - B*x */ 2516*b1a666ecSBarry Smith ierr = VecScale(mat->lvec,-1.0);CHKERRQ(ierr); 2517*b1a666ecSBarry Smith ierr = (*mat->B->ops->multadd)(mat->B,mat->lvec,bb,bb1);CHKERRQ(ierr); 2518*b1a666ecSBarry Smith 2519*b1a666ecSBarry Smith /* local sweep */ 2520*b1a666ecSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_FORWARD_SWEEP,fshift,lits,1,xx);CHKERRQ(ierr); 2521*b1a666ecSBarry Smith } 2522*b1a666ecSBarry Smith } else if (flag & SOR_LOCAL_BACKWARD_SWEEP){ 2523*b1a666ecSBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 2524*b1a666ecSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr); 2525*b1a666ecSBarry Smith its--; 2526*b1a666ecSBarry Smith } 2527*b1a666ecSBarry Smith while (its--) { 2528*b1a666ecSBarry Smith ierr = VecScatterBegin(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 2529*b1a666ecSBarry Smith ierr = VecScatterEnd(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 2530*b1a666ecSBarry Smith 2531*b1a666ecSBarry Smith /* update rhs: bb1 = bb - B*x */ 2532*b1a666ecSBarry Smith ierr = VecScale(mat->lvec,-1.0);CHKERRQ(ierr); 2533*b1a666ecSBarry Smith ierr = (*mat->B->ops->multadd)(mat->B,mat->lvec,bb,bb1);CHKERRQ(ierr); 2534*b1a666ecSBarry Smith 2535*b1a666ecSBarry Smith /* local sweep */ 2536*b1a666ecSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_BACKWARD_SWEEP,fshift,lits,1,xx);CHKERRQ(ierr); 2537*b1a666ecSBarry Smith } 2538*b1a666ecSBarry Smith } else { 2539*b1a666ecSBarry Smith SETERRQ(PETSC_ERR_SUP,"Parallel version of SOR requested not supported"); 2540*b1a666ecSBarry Smith } 2541*b1a666ecSBarry Smith 2542*b1a666ecSBarry Smith if (bb1) {ierr = VecDestroy(bb1);CHKERRQ(ierr);} 2543*b1a666ecSBarry Smith PetscFunctionReturn(0); 2544*b1a666ecSBarry Smith } 2545*b1a666ecSBarry Smith 2546f6d58c54SBarry Smith extern PetscErrorCode PETSCMAT_DLLEXPORT MatFDColoringApply_BAIJ(Mat,MatFDColoring,Vec,MatStructure*,void*); 2547f6d58c54SBarry Smith 25488c7482ecSBarry Smith 254979bdfe76SSatish Balay /* -------------------------------------------------------------------*/ 2550cc2dc46cSBarry Smith static struct _MatOps MatOps_Values = { 2551cc2dc46cSBarry Smith MatSetValues_MPIBAIJ, 2552cc2dc46cSBarry Smith MatGetRow_MPIBAIJ, 2553cc2dc46cSBarry Smith MatRestoreRow_MPIBAIJ, 2554cc2dc46cSBarry Smith MatMult_MPIBAIJ, 255597304618SKris Buschelman /* 4*/ MatMultAdd_MPIBAIJ, 25567c922b88SBarry Smith MatMultTranspose_MPIBAIJ, 25577c922b88SBarry Smith MatMultTransposeAdd_MPIBAIJ, 2558cc2dc46cSBarry Smith 0, 2559cc2dc46cSBarry Smith 0, 2560cc2dc46cSBarry Smith 0, 256197304618SKris Buschelman /*10*/ 0, 2562cc2dc46cSBarry Smith 0, 2563cc2dc46cSBarry Smith 0, 2564*b1a666ecSBarry Smith MatSOR_MPIBAIJ, 2565cc2dc46cSBarry Smith MatTranspose_MPIBAIJ, 256697304618SKris Buschelman /*15*/ MatGetInfo_MPIBAIJ, 25677fc3c18eSBarry Smith MatEqual_MPIBAIJ, 2568cc2dc46cSBarry Smith MatGetDiagonal_MPIBAIJ, 2569cc2dc46cSBarry Smith MatDiagonalScale_MPIBAIJ, 2570cc2dc46cSBarry Smith MatNorm_MPIBAIJ, 257197304618SKris Buschelman /*20*/ MatAssemblyBegin_MPIBAIJ, 2572cc2dc46cSBarry Smith MatAssemblyEnd_MPIBAIJ, 2573cc2dc46cSBarry Smith MatSetOption_MPIBAIJ, 2574cc2dc46cSBarry Smith MatZeroEntries_MPIBAIJ, 2575d519adbfSMatthew Knepley /*24*/ MatZeroRows_MPIBAIJ, 2576cc2dc46cSBarry Smith 0, 2577cc2dc46cSBarry Smith 0, 2578cc2dc46cSBarry Smith 0, 2579cc2dc46cSBarry Smith 0, 2580d519adbfSMatthew Knepley /*29*/ MatSetUpPreallocation_MPIBAIJ, 2581273d9f13SBarry Smith 0, 2582cc2dc46cSBarry Smith 0, 2583cc2dc46cSBarry Smith 0, 2584cc2dc46cSBarry Smith 0, 2585d519adbfSMatthew Knepley /*34*/ MatDuplicate_MPIBAIJ, 2586cc2dc46cSBarry Smith 0, 2587cc2dc46cSBarry Smith 0, 2588cc2dc46cSBarry Smith 0, 2589cc2dc46cSBarry Smith 0, 2590d519adbfSMatthew Knepley /*39*/ MatAXPY_MPIBAIJ, 2591cc2dc46cSBarry Smith MatGetSubMatrices_MPIBAIJ, 2592cc2dc46cSBarry Smith MatIncreaseOverlap_MPIBAIJ, 2593cc2dc46cSBarry Smith MatGetValues_MPIBAIJ, 25943c896bc6SHong Zhang MatCopy_MPIBAIJ, 2595d519adbfSMatthew Knepley /*44*/ 0, 2596cc2dc46cSBarry Smith MatScale_MPIBAIJ, 2597cc2dc46cSBarry Smith 0, 2598cc2dc46cSBarry Smith 0, 2599cc2dc46cSBarry Smith 0, 2600d519adbfSMatthew Knepley /*49*/ 0, 2601cc2dc46cSBarry Smith 0, 2602cc2dc46cSBarry Smith 0, 2603cc2dc46cSBarry Smith 0, 2604cc2dc46cSBarry Smith 0, 2605f6d58c54SBarry Smith /*54*/ MatFDColoringCreate_MPIBAIJ, 2606cc2dc46cSBarry Smith 0, 2607cc2dc46cSBarry Smith MatSetUnfactored_MPIBAIJ, 260882094794SBarry Smith MatPermute_MPIBAIJ, 2609cc2dc46cSBarry Smith MatSetValuesBlocked_MPIBAIJ, 2610d519adbfSMatthew Knepley /*59*/ MatGetSubMatrix_MPIBAIJ, 2611f14a1c24SBarry Smith MatDestroy_MPIBAIJ, 2612f14a1c24SBarry Smith MatView_MPIBAIJ, 2613357abbc8SBarry Smith 0, 26147843d17aSBarry Smith 0, 2615d519adbfSMatthew Knepley /*64*/ 0, 26167843d17aSBarry Smith 0, 26177843d17aSBarry Smith 0, 26187843d17aSBarry Smith 0, 26197843d17aSBarry Smith 0, 2620d519adbfSMatthew Knepley /*69*/ MatGetRowMaxAbs_MPIBAIJ, 26217843d17aSBarry Smith 0, 262297304618SKris Buschelman 0, 262397304618SKris Buschelman 0, 262497304618SKris Buschelman 0, 2625d519adbfSMatthew Knepley /*74*/ 0, 2626f6d58c54SBarry Smith MatFDColoringApply_BAIJ, 262797304618SKris Buschelman 0, 262897304618SKris Buschelman 0, 262997304618SKris Buschelman 0, 2630d519adbfSMatthew Knepley /*79*/ 0, 263197304618SKris Buschelman 0, 263297304618SKris Buschelman 0, 263397304618SKris Buschelman 0, 2634865e5f61SKris Buschelman MatLoad_MPIBAIJ, 2635d519adbfSMatthew Knepley /*84*/ 0, 2636865e5f61SKris Buschelman 0, 2637865e5f61SKris Buschelman 0, 2638865e5f61SKris Buschelman 0, 2639865e5f61SKris Buschelman 0, 2640d519adbfSMatthew Knepley /*89*/ 0, 2641865e5f61SKris Buschelman 0, 2642865e5f61SKris Buschelman 0, 2643865e5f61SKris Buschelman 0, 2644865e5f61SKris Buschelman 0, 2645d519adbfSMatthew Knepley /*94*/ 0, 2646865e5f61SKris Buschelman 0, 2647865e5f61SKris Buschelman 0, 264899cafbc1SBarry Smith 0, 264999cafbc1SBarry Smith 0, 2650d519adbfSMatthew Knepley /*99*/ 0, 265199cafbc1SBarry Smith 0, 265299cafbc1SBarry Smith 0, 265399cafbc1SBarry Smith 0, 265499cafbc1SBarry Smith 0, 2655d519adbfSMatthew Knepley /*104*/0, 265699cafbc1SBarry Smith MatRealPart_MPIBAIJ, 26578c7482ecSBarry Smith MatImaginaryPart_MPIBAIJ, 26588c7482ecSBarry Smith 0, 26598c7482ecSBarry Smith 0, 2660d519adbfSMatthew Knepley /*109*/0, 26618c7482ecSBarry Smith 0, 26628c7482ecSBarry Smith 0, 26638c7482ecSBarry Smith 0, 26648c7482ecSBarry Smith 0, 2665f6d58c54SBarry Smith /*114*/MatGetSeqNonzerostructure_MPIBAIJ, 26668c7482ecSBarry Smith 0, 26678c7482ecSBarry Smith MatGetGhosts_MPIBAIJ 26688c7482ecSBarry Smith }; 266979bdfe76SSatish Balay 2670e18c124aSSatish Balay EXTERN_C_BEGIN 26714a2ae208SSatish Balay #undef __FUNCT__ 26724a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonalBlock_MPIBAIJ" 2673be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatGetDiagonalBlock_MPIBAIJ(Mat A,PetscTruth *iscopy,MatReuse reuse,Mat *a) 26745ef9f2a5SBarry Smith { 26755ef9f2a5SBarry Smith PetscFunctionBegin; 26765ef9f2a5SBarry Smith *a = ((Mat_MPIBAIJ *)A->data)->A; 26775ef9f2a5SBarry Smith *iscopy = PETSC_FALSE; 26785ef9f2a5SBarry Smith PetscFunctionReturn(0); 26795ef9f2a5SBarry Smith } 2680e18c124aSSatish Balay EXTERN_C_END 268179bdfe76SSatish Balay 2682273d9f13SBarry Smith EXTERN_C_BEGIN 2683f69a0ea3SMatthew Knepley extern PetscErrorCode PETSCMAT_DLLEXPORT MatConvert_MPIBAIJ_MPISBAIJ(Mat, MatType,MatReuse,Mat*); 2684d94109b8SHong Zhang EXTERN_C_END 2685d94109b8SHong Zhang 2686b8d659d7SLisandro Dalcin EXTERN_C_BEGIN 2687aac34f13SBarry Smith #undef __FUNCT__ 2688aac34f13SBarry Smith #define __FUNCT__ "MatMPIBAIJSetPreallocationCSR_MPIBAIJ" 2689cf12db73SBarry Smith PetscErrorCode MatMPIBAIJSetPreallocationCSR_MPIBAIJ(Mat B,PetscInt bs,const PetscInt ii[],const PetscInt jj[],const PetscScalar V[]) 2690aac34f13SBarry Smith { 2691b8d659d7SLisandro Dalcin PetscInt m,rstart,cstart,cend; 2692b8d659d7SLisandro Dalcin PetscInt i,j,d,nz,nz_max=0,*d_nnz=0,*o_nnz=0; 2693b8d659d7SLisandro Dalcin const PetscInt *JJ=0; 2694b8d659d7SLisandro Dalcin PetscScalar *values=0; 2695aac34f13SBarry Smith PetscErrorCode ierr; 2696aac34f13SBarry Smith 2697aac34f13SBarry Smith PetscFunctionBegin; 2698b8d659d7SLisandro Dalcin 2699b8d659d7SLisandro Dalcin if (bs < 1) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Invalid block size specified, must be positive but it is %D",bs); 270026283091SBarry Smith ierr = PetscLayoutSetBlockSize(B->rmap,bs);CHKERRQ(ierr); 270126283091SBarry Smith ierr = PetscLayoutSetBlockSize(B->cmap,bs);CHKERRQ(ierr); 270226283091SBarry Smith ierr = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr); 270326283091SBarry Smith ierr = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr); 2704d0f46423SBarry Smith m = B->rmap->n/bs; 2705d0f46423SBarry Smith rstart = B->rmap->rstart/bs; 2706d0f46423SBarry Smith cstart = B->cmap->rstart/bs; 2707d0f46423SBarry Smith cend = B->cmap->rend/bs; 2708b8d659d7SLisandro Dalcin 2709cf12db73SBarry Smith if (ii[0]) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"ii[0] must be 0 but it is %D",ii[0]); 2710aac34f13SBarry Smith ierr = PetscMalloc((2*m+1)*sizeof(PetscInt),&d_nnz);CHKERRQ(ierr); 2711aac34f13SBarry Smith o_nnz = d_nnz + m; 2712aac34f13SBarry Smith for (i=0; i<m; i++) { 2713cf12db73SBarry Smith nz = ii[i+1] - ii[i]; 2714b8d659d7SLisandro Dalcin if (nz < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Local row %D has a negative number of columns %D",i,nz); 2715b8d659d7SLisandro Dalcin nz_max = PetscMax(nz_max,nz); 2716cf12db73SBarry Smith JJ = jj + ii[i]; 2717b8d659d7SLisandro Dalcin for (j=0; j<nz; j++) { 2718aac34f13SBarry Smith if (*JJ >= cstart) break; 2719aac34f13SBarry Smith JJ++; 2720aac34f13SBarry Smith } 2721aac34f13SBarry Smith d = 0; 2722b8d659d7SLisandro Dalcin for (; j<nz; j++) { 2723aac34f13SBarry Smith if (*JJ++ >= cend) break; 2724aac34f13SBarry Smith d++; 2725aac34f13SBarry Smith } 2726aac34f13SBarry Smith d_nnz[i] = d; 2727b8d659d7SLisandro Dalcin o_nnz[i] = nz - d; 2728aac34f13SBarry Smith } 2729aac34f13SBarry Smith ierr = MatMPIBAIJSetPreallocation(B,bs,0,d_nnz,0,o_nnz);CHKERRQ(ierr); 2730aac34f13SBarry Smith ierr = PetscFree(d_nnz);CHKERRQ(ierr); 2731aac34f13SBarry Smith 2732b8d659d7SLisandro Dalcin values = (PetscScalar*)V; 2733b8d659d7SLisandro Dalcin if (!values) { 2734b8d659d7SLisandro Dalcin ierr = PetscMalloc(bs*bs*(nz_max+1)*sizeof(PetscScalar),&values);CHKERRQ(ierr); 2735b8d659d7SLisandro Dalcin ierr = PetscMemzero(values,bs*bs*nz_max*sizeof(PetscScalar));CHKERRQ(ierr); 2736b8d659d7SLisandro Dalcin } 2737b8d659d7SLisandro Dalcin for (i=0; i<m; i++) { 2738b8d659d7SLisandro Dalcin PetscInt row = i + rstart; 2739cf12db73SBarry Smith PetscInt ncols = ii[i+1] - ii[i]; 2740cf12db73SBarry Smith const PetscInt *icols = jj + ii[i]; 2741cf12db73SBarry Smith const PetscScalar *svals = values + (V ? (bs*bs*ii[i]) : 0); 2742b8d659d7SLisandro Dalcin ierr = MatSetValuesBlocked_MPIBAIJ(B,1,&row,ncols,icols,svals,INSERT_VALUES);CHKERRQ(ierr); 2743aac34f13SBarry Smith } 2744aac34f13SBarry Smith 2745b8d659d7SLisandro Dalcin if (!V) { ierr = PetscFree(values);CHKERRQ(ierr); } 2746aac34f13SBarry Smith ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 2747aac34f13SBarry Smith ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 2748aac34f13SBarry Smith 2749aac34f13SBarry Smith PetscFunctionReturn(0); 2750aac34f13SBarry Smith } 2751b8d659d7SLisandro Dalcin EXTERN_C_END 2752aac34f13SBarry Smith 2753aac34f13SBarry Smith #undef __FUNCT__ 2754aac34f13SBarry Smith #define __FUNCT__ "MatMPIBAIJSetPreallocationCSR" 2755aac34f13SBarry Smith /*@C 2756aac34f13SBarry Smith MatMPIBAIJSetPreallocationCSR - Allocates memory for a sparse parallel matrix in AIJ format 2757aac34f13SBarry Smith (the default parallel PETSc format). 2758aac34f13SBarry Smith 2759aac34f13SBarry Smith Collective on MPI_Comm 2760aac34f13SBarry Smith 2761aac34f13SBarry Smith Input Parameters: 2762aac34f13SBarry Smith + A - the matrix 2763aac34f13SBarry Smith . i - the indices into j for the start of each local row (starts with zero) 2764aac34f13SBarry Smith . j - the column indices for each local row (starts with zero) these must be sorted for each row 2765aac34f13SBarry Smith - v - optional values in the matrix 2766aac34f13SBarry Smith 2767aac34f13SBarry Smith Level: developer 2768aac34f13SBarry Smith 2769aac34f13SBarry Smith .keywords: matrix, aij, compressed row, sparse, parallel 2770aac34f13SBarry Smith 2771aac34f13SBarry Smith .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatMPIBAIJSetPreallocation(), MatCreateMPIAIJ(), MPIAIJ 2772aac34f13SBarry Smith @*/ 2773be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPIBAIJSetPreallocationCSR(Mat B,PetscInt bs,const PetscInt i[],const PetscInt j[], const PetscScalar v[]) 2774aac34f13SBarry Smith { 2775aac34f13SBarry Smith PetscErrorCode ierr,(*f)(Mat,PetscInt,const PetscInt[],const PetscInt[],const PetscScalar[]); 2776aac34f13SBarry Smith 2777aac34f13SBarry Smith PetscFunctionBegin; 2778aac34f13SBarry Smith ierr = PetscObjectQueryFunction((PetscObject)B,"MatMPIBAIJSetPreallocationCSR_C",(void (**)(void))&f);CHKERRQ(ierr); 2779aac34f13SBarry Smith if (f) { 2780aac34f13SBarry Smith ierr = (*f)(B,bs,i,j,v);CHKERRQ(ierr); 2781aac34f13SBarry Smith } 2782aac34f13SBarry Smith PetscFunctionReturn(0); 2783aac34f13SBarry Smith } 2784aac34f13SBarry Smith 2785d94109b8SHong Zhang EXTERN_C_BEGIN 27864a2ae208SSatish Balay #undef __FUNCT__ 2787a23d5eceSKris Buschelman #define __FUNCT__ "MatMPIBAIJSetPreallocation_MPIBAIJ" 2788be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPIBAIJSetPreallocation_MPIBAIJ(Mat B,PetscInt bs,PetscInt d_nz,PetscInt *d_nnz,PetscInt o_nz,PetscInt *o_nnz) 2789a23d5eceSKris Buschelman { 2790a23d5eceSKris Buschelman Mat_MPIBAIJ *b; 2791dfbe8321SBarry Smith PetscErrorCode ierr; 2792db4efbfdSBarry Smith PetscInt i, newbs = PetscAbs(bs); 2793a23d5eceSKris Buschelman 2794a23d5eceSKris Buschelman PetscFunctionBegin; 2795db4efbfdSBarry Smith if (bs < 0) { 27967adad957SLisandro Dalcin ierr = PetscOptionsBegin(((PetscObject)B)->comm,((PetscObject)B)->prefix,"Options for MPIBAIJ matrix","Mat");CHKERRQ(ierr); 2797db4efbfdSBarry Smith ierr = PetscOptionsInt("-mat_block_size","Set the blocksize used to store the matrix","MatMPIBAIJSetPreallocation",newbs,&newbs,PETSC_NULL);CHKERRQ(ierr); 27988c07d4e3SBarry Smith ierr = PetscOptionsEnd();CHKERRQ(ierr); 2799db4efbfdSBarry Smith bs = PetscAbs(bs); 2800db4efbfdSBarry Smith } 2801db4efbfdSBarry Smith if ((d_nnz || o_nnz) && newbs != bs) { 2802db4efbfdSBarry Smith SETERRQ(PETSC_ERR_ARG_WRONG,"Cannot change blocksize from command line if setting d_nnz or o_nnz"); 2803db4efbfdSBarry Smith } 2804db4efbfdSBarry Smith bs = newbs; 2805db4efbfdSBarry Smith 2806a23d5eceSKris Buschelman 2807a23d5eceSKris Buschelman if (bs < 1) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Invalid block size specified, must be positive"); 2808a23d5eceSKris Buschelman if (d_nz == PETSC_DEFAULT || d_nz == PETSC_DECIDE) d_nz = 5; 2809a23d5eceSKris Buschelman if (o_nz == PETSC_DEFAULT || o_nz == PETSC_DECIDE) o_nz = 2; 281077431f27SBarry Smith if (d_nz < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"d_nz cannot be less than 0: value %D",d_nz); 281177431f27SBarry Smith if (o_nz < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"o_nz cannot be less than 0: value %D",o_nz); 2812899cda47SBarry Smith 281326283091SBarry Smith ierr = PetscLayoutSetBlockSize(B->rmap,bs);CHKERRQ(ierr); 281426283091SBarry Smith ierr = PetscLayoutSetBlockSize(B->cmap,bs);CHKERRQ(ierr); 281526283091SBarry Smith ierr = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr); 281626283091SBarry Smith ierr = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr); 2817899cda47SBarry Smith 2818a23d5eceSKris Buschelman if (d_nnz) { 2819d0f46423SBarry Smith for (i=0; i<B->rmap->n/bs; i++) { 282077431f27SBarry Smith if (d_nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"d_nnz cannot be less than -1: local row %D value %D",i,d_nnz[i]); 2821a23d5eceSKris Buschelman } 2822a23d5eceSKris Buschelman } 2823a23d5eceSKris Buschelman if (o_nnz) { 2824d0f46423SBarry Smith for (i=0; i<B->rmap->n/bs; i++) { 282577431f27SBarry Smith if (o_nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"o_nnz cannot be less than -1: local row %D value %D",i,o_nnz[i]); 2826a23d5eceSKris Buschelman } 2827a23d5eceSKris Buschelman } 2828a23d5eceSKris Buschelman 2829a23d5eceSKris Buschelman b = (Mat_MPIBAIJ*)B->data; 2830a23d5eceSKris Buschelman b->bs2 = bs*bs; 2831d0f46423SBarry Smith b->mbs = B->rmap->n/bs; 2832d0f46423SBarry Smith b->nbs = B->cmap->n/bs; 2833d0f46423SBarry Smith b->Mbs = B->rmap->N/bs; 2834d0f46423SBarry Smith b->Nbs = B->cmap->N/bs; 2835a23d5eceSKris Buschelman 2836a23d5eceSKris Buschelman for (i=0; i<=b->size; i++) { 2837d0f46423SBarry Smith b->rangebs[i] = B->rmap->range[i]/bs; 2838a23d5eceSKris Buschelman } 2839d0f46423SBarry Smith b->rstartbs = B->rmap->rstart/bs; 2840d0f46423SBarry Smith b->rendbs = B->rmap->rend/bs; 2841d0f46423SBarry Smith b->cstartbs = B->cmap->rstart/bs; 2842d0f46423SBarry Smith b->cendbs = B->cmap->rend/bs; 2843a23d5eceSKris Buschelman 2844526dfc15SBarry Smith if (!B->preallocated) { 2845f69a0ea3SMatthew Knepley ierr = MatCreate(PETSC_COMM_SELF,&b->A);CHKERRQ(ierr); 2846d0f46423SBarry Smith ierr = MatSetSizes(b->A,B->rmap->n,B->cmap->n,B->rmap->n,B->cmap->n);CHKERRQ(ierr); 28479c097c71SKris Buschelman ierr = MatSetType(b->A,MATSEQBAIJ);CHKERRQ(ierr); 284852e6d16bSBarry Smith ierr = PetscLogObjectParent(B,b->A);CHKERRQ(ierr); 2849f69a0ea3SMatthew Knepley ierr = MatCreate(PETSC_COMM_SELF,&b->B);CHKERRQ(ierr); 2850d0f46423SBarry Smith ierr = MatSetSizes(b->B,B->rmap->n,B->cmap->N,B->rmap->n,B->cmap->N);CHKERRQ(ierr); 28519c097c71SKris Buschelman ierr = MatSetType(b->B,MATSEQBAIJ);CHKERRQ(ierr); 285252e6d16bSBarry Smith ierr = PetscLogObjectParent(B,b->B);CHKERRQ(ierr); 28537adad957SLisandro Dalcin ierr = MatStashCreate_Private(((PetscObject)B)->comm,bs,&B->bstash);CHKERRQ(ierr); 2854526dfc15SBarry Smith } 2855a23d5eceSKris Buschelman 2856526dfc15SBarry Smith ierr = MatSeqBAIJSetPreallocation(b->A,bs,d_nz,d_nnz);CHKERRQ(ierr); 2857526dfc15SBarry Smith ierr = MatSeqBAIJSetPreallocation(b->B,bs,o_nz,o_nnz);CHKERRQ(ierr); 2858526dfc15SBarry Smith B->preallocated = PETSC_TRUE; 2859a23d5eceSKris Buschelman PetscFunctionReturn(0); 2860a23d5eceSKris Buschelman } 2861a23d5eceSKris Buschelman EXTERN_C_END 2862a23d5eceSKris Buschelman 2863a23d5eceSKris Buschelman EXTERN_C_BEGIN 2864be1d678aSKris Buschelman EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatDiagonalScaleLocal_MPIBAIJ(Mat,Vec); 2865be1d678aSKris Buschelman EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatSetHashTableFactor_MPIBAIJ(Mat,PetscReal); 286692b32695SKris Buschelman EXTERN_C_END 28675bf65638SKris Buschelman 286882094794SBarry Smith 286982094794SBarry Smith EXTERN_C_BEGIN 287082094794SBarry Smith #undef __FUNCT__ 287182094794SBarry Smith #define __FUNCT__ "MatConvert_MPIBAIJ_MPIAdj" 287282094794SBarry Smith PetscErrorCode PETSCMAT_DLLEXPORT MatConvert_MPIBAIJ_MPIAdj(Mat B, const MatType newtype,MatReuse reuse,Mat *adj) 287382094794SBarry Smith { 287482094794SBarry Smith Mat_MPIBAIJ *b = (Mat_MPIBAIJ*)B->data; 287582094794SBarry Smith PetscErrorCode ierr; 287682094794SBarry Smith Mat_SeqBAIJ *d = (Mat_SeqBAIJ*) b->A->data,*o = (Mat_SeqBAIJ*) b->B->data; 287782094794SBarry Smith PetscInt M = B->rmap->n/B->rmap->bs,i,*ii,*jj,cnt,j,k,rstart = B->rmap->rstart/B->rmap->bs; 287882094794SBarry Smith const PetscInt *id = d->i, *jd = d->j, *io = o->i, *jo = o->j, *garray = b->garray; 287982094794SBarry Smith 288082094794SBarry Smith PetscFunctionBegin; 288182094794SBarry Smith ierr = PetscMalloc((M+1)*sizeof(PetscInt),&ii);CHKERRQ(ierr); 288282094794SBarry Smith ii[0] = 0; 288382094794SBarry Smith CHKMEMQ; 288482094794SBarry Smith for (i=0; i<M; i++) { 288582094794SBarry Smith if ((id[i+1] - id[i]) < 0) SETERRQ3(PETSC_ERR_PLIB,"Indices wrong %D %D %D",i,id[i],id[i+1]); 288682094794SBarry Smith if ((io[i+1] - io[i]) < 0) SETERRQ3(PETSC_ERR_PLIB,"Indices wrong %D %D %D",i,io[i],io[i+1]); 288782094794SBarry Smith ii[i+1] = ii[i] + id[i+1] - id[i] + io[i+1] - io[i]; 288882094794SBarry Smith /* remove one from count of matrix has diagonal */ 288982094794SBarry Smith for (j=id[i]; j<id[i+1]; j++) { 289082094794SBarry Smith if (jd[j] == i) {ii[i+1]--;break;} 289182094794SBarry Smith } 289282094794SBarry Smith CHKMEMQ; 289382094794SBarry Smith } 289482094794SBarry Smith ierr = PetscMalloc(ii[M]*sizeof(PetscInt),&jj);CHKERRQ(ierr); 289582094794SBarry Smith cnt = 0; 289682094794SBarry Smith for (i=0; i<M; i++) { 289782094794SBarry Smith for (j=io[i]; j<io[i+1]; j++) { 289882094794SBarry Smith if (garray[jo[j]] > rstart) break; 289982094794SBarry Smith jj[cnt++] = garray[jo[j]]; 290082094794SBarry Smith CHKMEMQ; 290182094794SBarry Smith } 290282094794SBarry Smith for (k=id[i]; k<id[i+1]; k++) { 290382094794SBarry Smith if (jd[k] != i) { 290482094794SBarry Smith jj[cnt++] = rstart + jd[k]; 290582094794SBarry Smith CHKMEMQ; 290682094794SBarry Smith } 290782094794SBarry Smith } 290882094794SBarry Smith for (;j<io[i+1]; j++) { 290982094794SBarry Smith jj[cnt++] = garray[jo[j]]; 291082094794SBarry Smith CHKMEMQ; 291182094794SBarry Smith } 291282094794SBarry Smith } 291382094794SBarry Smith ierr = MatCreateMPIAdj(((PetscObject)B)->comm,M,B->cmap->N/B->rmap->bs,ii,jj,PETSC_NULL,adj);CHKERRQ(ierr); 291482094794SBarry Smith PetscFunctionReturn(0); 291582094794SBarry Smith } 2916dbf0e21dSBarry Smith EXTERN_C_END 291782094794SBarry Smith 29180bad9183SKris Buschelman /*MC 2919fafad747SKris Buschelman MATMPIBAIJ - MATMPIBAIJ = "mpibaij" - A matrix type to be used for distributed block sparse matrices. 29200bad9183SKris Buschelman 29210bad9183SKris Buschelman Options Database Keys: 29228c07d4e3SBarry Smith + -mat_type mpibaij - sets the matrix type to "mpibaij" during a call to MatSetFromOptions() 29238c07d4e3SBarry Smith . -mat_block_size <bs> - set the blocksize used to store the matrix 29248c07d4e3SBarry Smith - -mat_use_hash_table <fact> 29250bad9183SKris Buschelman 29260bad9183SKris Buschelman Level: beginner 29270bad9183SKris Buschelman 29280bad9183SKris Buschelman .seealso: MatCreateMPIBAIJ 29290bad9183SKris Buschelman M*/ 29300bad9183SKris Buschelman 293192b32695SKris Buschelman EXTERN_C_BEGIN 2932a23d5eceSKris Buschelman #undef __FUNCT__ 29334a2ae208SSatish Balay #define __FUNCT__ "MatCreate_MPIBAIJ" 2934be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreate_MPIBAIJ(Mat B) 2935273d9f13SBarry Smith { 2936273d9f13SBarry Smith Mat_MPIBAIJ *b; 2937dfbe8321SBarry Smith PetscErrorCode ierr; 2938273d9f13SBarry Smith PetscTruth flg; 2939273d9f13SBarry Smith 2940273d9f13SBarry Smith PetscFunctionBegin; 294138f2d2fdSLisandro Dalcin ierr = PetscNewLog(B,Mat_MPIBAIJ,&b);CHKERRQ(ierr); 294282502324SSatish Balay B->data = (void*)b; 294382502324SSatish Balay 2944085a36d4SBarry Smith 2945273d9f13SBarry Smith ierr = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr); 2946273d9f13SBarry Smith B->mapping = 0; 2947273d9f13SBarry Smith B->assembled = PETSC_FALSE; 2948273d9f13SBarry Smith 2949273d9f13SBarry Smith B->insertmode = NOT_SET_VALUES; 29507adad957SLisandro Dalcin ierr = MPI_Comm_rank(((PetscObject)B)->comm,&b->rank);CHKERRQ(ierr); 29517adad957SLisandro Dalcin ierr = MPI_Comm_size(((PetscObject)B)->comm,&b->size);CHKERRQ(ierr); 2952273d9f13SBarry Smith 2953273d9f13SBarry Smith /* build local table of row and column ownerships */ 2954899cda47SBarry Smith ierr = PetscMalloc((b->size+1)*sizeof(PetscInt),&b->rangebs);CHKERRQ(ierr); 2955273d9f13SBarry Smith 2956273d9f13SBarry Smith /* build cache for off array entries formed */ 29577adad957SLisandro Dalcin ierr = MatStashCreate_Private(((PetscObject)B)->comm,1,&B->stash);CHKERRQ(ierr); 2958273d9f13SBarry Smith b->donotstash = PETSC_FALSE; 2959273d9f13SBarry Smith b->colmap = PETSC_NULL; 2960273d9f13SBarry Smith b->garray = PETSC_NULL; 2961273d9f13SBarry Smith b->roworiented = PETSC_TRUE; 2962273d9f13SBarry Smith 2963273d9f13SBarry Smith /* stuff used in block assembly */ 2964273d9f13SBarry Smith b->barray = 0; 2965273d9f13SBarry Smith 2966273d9f13SBarry Smith /* stuff used for matrix vector multiply */ 2967273d9f13SBarry Smith b->lvec = 0; 2968273d9f13SBarry Smith b->Mvctx = 0; 2969273d9f13SBarry Smith 2970273d9f13SBarry Smith /* stuff for MatGetRow() */ 2971273d9f13SBarry Smith b->rowindices = 0; 2972273d9f13SBarry Smith b->rowvalues = 0; 2973273d9f13SBarry Smith b->getrowactive = PETSC_FALSE; 2974273d9f13SBarry Smith 2975273d9f13SBarry Smith /* hash table stuff */ 2976273d9f13SBarry Smith b->ht = 0; 2977273d9f13SBarry Smith b->hd = 0; 2978273d9f13SBarry Smith b->ht_size = 0; 2979273d9f13SBarry Smith b->ht_flag = PETSC_FALSE; 2980273d9f13SBarry Smith b->ht_fact = 0; 2981273d9f13SBarry Smith b->ht_total_ct = 0; 2982273d9f13SBarry Smith b->ht_insert_ct = 0; 2983273d9f13SBarry Smith 29847adad957SLisandro Dalcin ierr = PetscOptionsBegin(((PetscObject)B)->comm,PETSC_NULL,"Options for loading MPIBAIJ matrix 1","Mat");CHKERRQ(ierr); 29858c07d4e3SBarry Smith ierr = PetscOptionsTruth("-mat_use_hash_table","Use hash table to save memory in constructing matrix","MatSetOption",PETSC_FALSE,&flg,PETSC_NULL);CHKERRQ(ierr); 2986273d9f13SBarry Smith if (flg) { 2987f6275e2eSBarry Smith PetscReal fact = 1.39; 29884e0d8c25SBarry Smith ierr = MatSetOption(B,MAT_USE_HASH_TABLE,PETSC_TRUE);CHKERRQ(ierr); 29898c07d4e3SBarry Smith ierr = PetscOptionsReal("-mat_use_hash_table","Use hash table factor","MatMPIBAIJSetHashTableFactor",fact,&fact,PETSC_NULL);CHKERRQ(ierr); 2990273d9f13SBarry Smith if (fact <= 1.0) fact = 1.39; 2991273d9f13SBarry Smith ierr = MatMPIBAIJSetHashTableFactor(B,fact);CHKERRQ(ierr); 29921e2582c4SBarry Smith ierr = PetscInfo1(B,"Hash table Factor used %5.2f\n",fact);CHKERRQ(ierr); 2993273d9f13SBarry Smith } 29948c07d4e3SBarry Smith ierr = PetscOptionsEnd();CHKERRQ(ierr); 29958c07d4e3SBarry Smith 299682094794SBarry Smith ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatConvert_mpibaij_mpiadj_C", 299782094794SBarry Smith "MatConvert_MPIBAIJ_MPIAdj", 299882094794SBarry Smith MatConvert_MPIBAIJ_MPIAdj);CHKERRQ(ierr); 2999273d9f13SBarry Smith ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatStoreValues_C", 3000273d9f13SBarry Smith "MatStoreValues_MPIBAIJ", 3001273d9f13SBarry Smith MatStoreValues_MPIBAIJ);CHKERRQ(ierr); 3002273d9f13SBarry Smith ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatRetrieveValues_C", 3003273d9f13SBarry Smith "MatRetrieveValues_MPIBAIJ", 3004273d9f13SBarry Smith MatRetrieveValues_MPIBAIJ);CHKERRQ(ierr); 3005273d9f13SBarry Smith ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetDiagonalBlock_C", 3006273d9f13SBarry Smith "MatGetDiagonalBlock_MPIBAIJ", 3007273d9f13SBarry Smith MatGetDiagonalBlock_MPIBAIJ);CHKERRQ(ierr); 3008a23d5eceSKris Buschelman ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatMPIBAIJSetPreallocation_C", 3009a23d5eceSKris Buschelman "MatMPIBAIJSetPreallocation_MPIBAIJ", 3010a23d5eceSKris Buschelman MatMPIBAIJSetPreallocation_MPIBAIJ);CHKERRQ(ierr); 3011aac34f13SBarry Smith ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatMPIBAIJSetPreallocationCSR_C", 301244ec7894SLisandro Dalcin "MatMPIBAIJSetPreallocationCSR_MPIBAIJ", 3013aac34f13SBarry Smith MatMPIBAIJSetPreallocationCSR_MPIBAIJ);CHKERRQ(ierr); 301492b32695SKris Buschelman ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatDiagonalScaleLocal_C", 301592b32695SKris Buschelman "MatDiagonalScaleLocal_MPIBAIJ", 301692b32695SKris Buschelman MatDiagonalScaleLocal_MPIBAIJ);CHKERRQ(ierr); 30175bf65638SKris Buschelman ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatSetHashTableFactor_C", 30185bf65638SKris Buschelman "MatSetHashTableFactor_MPIBAIJ", 30195bf65638SKris Buschelman MatSetHashTableFactor_MPIBAIJ);CHKERRQ(ierr); 302017667f90SBarry Smith ierr = PetscObjectChangeTypeName((PetscObject)B,MATMPIBAIJ);CHKERRQ(ierr); 3021273d9f13SBarry Smith PetscFunctionReturn(0); 3022273d9f13SBarry Smith } 3023273d9f13SBarry Smith EXTERN_C_END 3024273d9f13SBarry Smith 3025209238afSKris Buschelman /*MC 3026002d173eSKris Buschelman MATBAIJ - MATBAIJ = "baij" - A matrix type to be used for block sparse matrices. 3027209238afSKris Buschelman 3028209238afSKris Buschelman This matrix type is identical to MATSEQBAIJ when constructed with a single process communicator, 3029209238afSKris Buschelman and MATMPIBAIJ otherwise. 3030209238afSKris Buschelman 3031209238afSKris Buschelman Options Database Keys: 3032209238afSKris Buschelman . -mat_type baij - sets the matrix type to "baij" during a call to MatSetFromOptions() 3033209238afSKris Buschelman 3034209238afSKris Buschelman Level: beginner 3035209238afSKris Buschelman 3036aac34f13SBarry Smith .seealso: MatCreateMPIBAIJ(),MATSEQBAIJ,MATMPIBAIJ, MatMPIBAIJSetPreallocation(), MatMPIBAIJSetPreallocationCSR() 3037209238afSKris Buschelman M*/ 3038209238afSKris Buschelman 3039209238afSKris Buschelman EXTERN_C_BEGIN 3040209238afSKris Buschelman #undef __FUNCT__ 3041209238afSKris Buschelman #define __FUNCT__ "MatCreate_BAIJ" 3042be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreate_BAIJ(Mat A) 3043dfbe8321SBarry Smith { 30446849ba73SBarry Smith PetscErrorCode ierr; 3045b24ad042SBarry Smith PetscMPIInt size; 3046209238afSKris Buschelman 3047209238afSKris Buschelman PetscFunctionBegin; 30487adad957SLisandro Dalcin ierr = MPI_Comm_size(((PetscObject)A)->comm,&size);CHKERRQ(ierr); 3049209238afSKris Buschelman if (size == 1) { 3050209238afSKris Buschelman ierr = MatSetType(A,MATSEQBAIJ);CHKERRQ(ierr); 3051209238afSKris Buschelman } else { 3052209238afSKris Buschelman ierr = MatSetType(A,MATMPIBAIJ);CHKERRQ(ierr); 3053209238afSKris Buschelman } 3054209238afSKris Buschelman PetscFunctionReturn(0); 3055209238afSKris Buschelman } 3056209238afSKris Buschelman EXTERN_C_END 3057209238afSKris Buschelman 30584a2ae208SSatish Balay #undef __FUNCT__ 30594a2ae208SSatish Balay #define __FUNCT__ "MatMPIBAIJSetPreallocation" 3060273d9f13SBarry Smith /*@C 3061aac34f13SBarry Smith MatMPIBAIJSetPreallocation - Allocates memory for a sparse parallel matrix in block AIJ format 3062273d9f13SBarry Smith (block compressed row). For good matrix assembly performance 3063273d9f13SBarry Smith the user should preallocate the matrix storage by setting the parameters 3064273d9f13SBarry Smith d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 3065273d9f13SBarry Smith performance can be increased by more than a factor of 50. 3066273d9f13SBarry Smith 3067273d9f13SBarry Smith Collective on Mat 3068273d9f13SBarry Smith 3069273d9f13SBarry Smith Input Parameters: 3070273d9f13SBarry Smith + A - the matrix 3071273d9f13SBarry Smith . bs - size of blockk 3072273d9f13SBarry Smith . d_nz - number of block nonzeros per block row in diagonal portion of local 3073273d9f13SBarry Smith submatrix (same for all local rows) 3074273d9f13SBarry Smith . d_nnz - array containing the number of block nonzeros in the various block rows 3075273d9f13SBarry Smith of the in diagonal portion of the local (possibly different for each block 3076273d9f13SBarry Smith row) or PETSC_NULL. You must leave room for the diagonal entry even if it is zero. 3077273d9f13SBarry Smith . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 3078273d9f13SBarry Smith submatrix (same for all local rows). 3079273d9f13SBarry Smith - o_nnz - array containing the number of nonzeros in the various block rows of the 3080273d9f13SBarry Smith off-diagonal portion of the local submatrix (possibly different for 3081273d9f13SBarry Smith each block row) or PETSC_NULL. 3082273d9f13SBarry Smith 308349a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 3084273d9f13SBarry Smith 3085273d9f13SBarry Smith Options Database Keys: 30868c07d4e3SBarry Smith + -mat_block_size - size of the blocks to use 30878c07d4e3SBarry Smith - -mat_use_hash_table <fact> 3088273d9f13SBarry Smith 3089273d9f13SBarry Smith Notes: 3090273d9f13SBarry Smith If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one processor 3091273d9f13SBarry Smith than it must be used on all processors that share the object for that argument. 3092273d9f13SBarry Smith 3093273d9f13SBarry Smith Storage Information: 3094273d9f13SBarry Smith For a square global matrix we define each processor's diagonal portion 3095273d9f13SBarry Smith to be its local rows and the corresponding columns (a square submatrix); 3096273d9f13SBarry Smith each processor's off-diagonal portion encompasses the remainder of the 3097273d9f13SBarry Smith local matrix (a rectangular submatrix). 3098273d9f13SBarry Smith 3099273d9f13SBarry Smith The user can specify preallocated storage for the diagonal part of 3100273d9f13SBarry Smith the local submatrix with either d_nz or d_nnz (not both). Set 3101273d9f13SBarry Smith d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic 3102273d9f13SBarry Smith memory allocation. Likewise, specify preallocated storage for the 3103273d9f13SBarry Smith off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 3104273d9f13SBarry Smith 3105273d9f13SBarry Smith Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 3106273d9f13SBarry Smith the figure below we depict these three local rows and all columns (0-11). 3107273d9f13SBarry Smith 3108273d9f13SBarry Smith .vb 3109273d9f13SBarry Smith 0 1 2 3 4 5 6 7 8 9 10 11 3110273d9f13SBarry Smith ------------------- 3111273d9f13SBarry Smith row 3 | o o o d d d o o o o o o 3112273d9f13SBarry Smith row 4 | o o o d d d o o o o o o 3113273d9f13SBarry Smith row 5 | o o o d d d o o o o o o 3114273d9f13SBarry Smith ------------------- 3115273d9f13SBarry Smith .ve 3116273d9f13SBarry Smith 3117273d9f13SBarry Smith Thus, any entries in the d locations are stored in the d (diagonal) 3118273d9f13SBarry Smith submatrix, and any entries in the o locations are stored in the 3119273d9f13SBarry Smith o (off-diagonal) submatrix. Note that the d and the o submatrices are 3120273d9f13SBarry Smith stored simply in the MATSEQBAIJ format for compressed row storage. 3121273d9f13SBarry Smith 3122273d9f13SBarry Smith Now d_nz should indicate the number of block nonzeros per row in the d matrix, 3123273d9f13SBarry Smith and o_nz should indicate the number of block nonzeros per row in the o matrix. 3124273d9f13SBarry Smith In general, for PDE problems in which most nonzeros are near the diagonal, 3125273d9f13SBarry Smith one expects d_nz >> o_nz. For large problems you MUST preallocate memory 3126273d9f13SBarry Smith or you will get TERRIBLE performance; see the users' manual chapter on 3127273d9f13SBarry Smith matrices. 3128273d9f13SBarry Smith 3129aa95bbe8SBarry Smith You can call MatGetInfo() to get information on how effective the preallocation was; 3130aa95bbe8SBarry Smith for example the fields mallocs,nz_allocated,nz_used,nz_unneeded; 3131aa95bbe8SBarry Smith You can also run with the option -info and look for messages with the string 3132aa95bbe8SBarry Smith malloc in them to see if additional memory allocation was needed. 3133aa95bbe8SBarry Smith 3134273d9f13SBarry Smith Level: intermediate 3135273d9f13SBarry Smith 3136273d9f13SBarry Smith .keywords: matrix, block, aij, compressed row, sparse, parallel 3137273d9f13SBarry Smith 3138aac34f13SBarry Smith .seealso: MatCreate(), MatCreateSeqBAIJ(), MatSetValues(), MatCreateMPIBAIJ(), MatMPIBAIJSetPreallocationCSR() 3139273d9f13SBarry Smith @*/ 3140be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPIBAIJSetPreallocation(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[]) 3141273d9f13SBarry Smith { 3142b24ad042SBarry Smith PetscErrorCode ierr,(*f)(Mat,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[]); 3143273d9f13SBarry Smith 3144273d9f13SBarry Smith PetscFunctionBegin; 3145a23d5eceSKris Buschelman ierr = PetscObjectQueryFunction((PetscObject)B,"MatMPIBAIJSetPreallocation_C",(void (**)(void))&f);CHKERRQ(ierr); 3146a23d5eceSKris Buschelman if (f) { 3147a23d5eceSKris Buschelman ierr = (*f)(B,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr); 3148273d9f13SBarry Smith } 3149273d9f13SBarry Smith PetscFunctionReturn(0); 3150273d9f13SBarry Smith } 3151273d9f13SBarry Smith 31524a2ae208SSatish Balay #undef __FUNCT__ 31534a2ae208SSatish Balay #define __FUNCT__ "MatCreateMPIBAIJ" 315479bdfe76SSatish Balay /*@C 315579bdfe76SSatish Balay MatCreateMPIBAIJ - Creates a sparse parallel matrix in block AIJ format 315679bdfe76SSatish Balay (block compressed row). For good matrix assembly performance 315779bdfe76SSatish Balay the user should preallocate the matrix storage by setting the parameters 315879bdfe76SSatish Balay d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 315979bdfe76SSatish Balay performance can be increased by more than a factor of 50. 316079bdfe76SSatish Balay 3161db81eaa0SLois Curfman McInnes Collective on MPI_Comm 3162db81eaa0SLois Curfman McInnes 316379bdfe76SSatish Balay Input Parameters: 3164db81eaa0SLois Curfman McInnes + comm - MPI communicator 316579bdfe76SSatish Balay . bs - size of blockk 316679bdfe76SSatish Balay . m - number of local rows (or PETSC_DECIDE to have calculated if M is given) 316792e8d321SLois Curfman McInnes This value should be the same as the local size used in creating the 316892e8d321SLois Curfman McInnes y vector for the matrix-vector product y = Ax. 316992e8d321SLois Curfman McInnes . n - number of local columns (or PETSC_DECIDE to have calculated if N is given) 317092e8d321SLois Curfman McInnes This value should be the same as the local size used in creating the 317192e8d321SLois Curfman McInnes x vector for the matrix-vector product y = Ax. 3172be79a94dSBarry Smith . M - number of global rows (or PETSC_DETERMINE to have calculated if m is given) 3173be79a94dSBarry Smith . N - number of global columns (or PETSC_DETERMINE to have calculated if n is given) 317447a75d0bSBarry Smith . d_nz - number of nonzero blocks per block row in diagonal portion of local 317579bdfe76SSatish Balay submatrix (same for all local rows) 317647a75d0bSBarry Smith . d_nnz - array containing the number of nonzero blocks in the various block rows 317792e8d321SLois Curfman McInnes of the in diagonal portion of the local (possibly different for each block 3178db81eaa0SLois Curfman McInnes row) or PETSC_NULL. You must leave room for the diagonal entry even if it is zero. 317947a75d0bSBarry Smith . o_nz - number of nonzero blocks per block row in the off-diagonal portion of local 318079bdfe76SSatish Balay submatrix (same for all local rows). 318147a75d0bSBarry Smith - o_nnz - array containing the number of nonzero blocks in the various block rows of the 318292e8d321SLois Curfman McInnes off-diagonal portion of the local submatrix (possibly different for 318392e8d321SLois Curfman McInnes each block row) or PETSC_NULL. 318479bdfe76SSatish Balay 318579bdfe76SSatish Balay Output Parameter: 318679bdfe76SSatish Balay . A - the matrix 318779bdfe76SSatish Balay 3188db81eaa0SLois Curfman McInnes Options Database Keys: 31898c07d4e3SBarry Smith + -mat_block_size - size of the blocks to use 31908c07d4e3SBarry Smith - -mat_use_hash_table <fact> 31913ffaccefSLois Curfman McInnes 3192175b88e8SBarry Smith It is recommended that one use the MatCreate(), MatSetType() and/or MatSetFromOptions(), 3193ae1d86c5SBarry Smith MatXXXXSetPreallocation() paradgm instead of this routine directly. 3194175b88e8SBarry Smith [MatXXXXSetPreallocation() is, for example, MatSeqAIJSetPreallocation] 3195175b88e8SBarry Smith 3196b259b22eSLois Curfman McInnes Notes: 319749a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 319849a6f317SBarry Smith 319947a75d0bSBarry Smith A nonzero block is any block that as 1 or more nonzeros in it 320047a75d0bSBarry Smith 320179bdfe76SSatish Balay The user MUST specify either the local or global matrix dimensions 320279bdfe76SSatish Balay (possibly both). 320379bdfe76SSatish Balay 3204be79a94dSBarry Smith If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one processor 3205be79a94dSBarry Smith than it must be used on all processors that share the object for that argument. 3206be79a94dSBarry Smith 320779bdfe76SSatish Balay Storage Information: 320879bdfe76SSatish Balay For a square global matrix we define each processor's diagonal portion 320979bdfe76SSatish Balay to be its local rows and the corresponding columns (a square submatrix); 321079bdfe76SSatish Balay each processor's off-diagonal portion encompasses the remainder of the 321179bdfe76SSatish Balay local matrix (a rectangular submatrix). 321279bdfe76SSatish Balay 321379bdfe76SSatish Balay The user can specify preallocated storage for the diagonal part of 321479bdfe76SSatish Balay the local submatrix with either d_nz or d_nnz (not both). Set 321579bdfe76SSatish Balay d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic 321679bdfe76SSatish Balay memory allocation. Likewise, specify preallocated storage for the 321779bdfe76SSatish Balay off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 321879bdfe76SSatish Balay 321979bdfe76SSatish Balay Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 322079bdfe76SSatish Balay the figure below we depict these three local rows and all columns (0-11). 322179bdfe76SSatish Balay 3222db81eaa0SLois Curfman McInnes .vb 3223db81eaa0SLois Curfman McInnes 0 1 2 3 4 5 6 7 8 9 10 11 3224db81eaa0SLois Curfman McInnes ------------------- 3225db81eaa0SLois Curfman McInnes row 3 | o o o d d d o o o o o o 3226db81eaa0SLois Curfman McInnes row 4 | o o o d d d o o o o o o 3227db81eaa0SLois Curfman McInnes row 5 | o o o d d d o o o o o o 3228db81eaa0SLois Curfman McInnes ------------------- 3229db81eaa0SLois Curfman McInnes .ve 323079bdfe76SSatish Balay 323179bdfe76SSatish Balay Thus, any entries in the d locations are stored in the d (diagonal) 323279bdfe76SSatish Balay submatrix, and any entries in the o locations are stored in the 323379bdfe76SSatish Balay o (off-diagonal) submatrix. Note that the d and the o submatrices are 323457b952d6SSatish Balay stored simply in the MATSEQBAIJ format for compressed row storage. 323579bdfe76SSatish Balay 3236d64ed03dSBarry Smith Now d_nz should indicate the number of block nonzeros per row in the d matrix, 3237d64ed03dSBarry Smith and o_nz should indicate the number of block nonzeros per row in the o matrix. 323879bdfe76SSatish Balay In general, for PDE problems in which most nonzeros are near the diagonal, 323992e8d321SLois Curfman McInnes one expects d_nz >> o_nz. For large problems you MUST preallocate memory 324092e8d321SLois Curfman McInnes or you will get TERRIBLE performance; see the users' manual chapter on 32416da5968aSLois Curfman McInnes matrices. 324279bdfe76SSatish Balay 3243027ccd11SLois Curfman McInnes Level: intermediate 3244027ccd11SLois Curfman McInnes 324592e8d321SLois Curfman McInnes .keywords: matrix, block, aij, compressed row, sparse, parallel 324679bdfe76SSatish Balay 3247aac34f13SBarry Smith .seealso: MatCreate(), MatCreateSeqBAIJ(), MatSetValues(), MatCreateMPIBAIJ(), MatMPIBAIJSetPreallocation(), MatMPIBAIJSetPreallocationCSR() 324879bdfe76SSatish Balay @*/ 3249be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreateMPIBAIJ(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[],Mat *A) 325079bdfe76SSatish Balay { 32516849ba73SBarry Smith PetscErrorCode ierr; 3252b24ad042SBarry Smith PetscMPIInt size; 325379bdfe76SSatish Balay 3254d64ed03dSBarry Smith PetscFunctionBegin; 3255f69a0ea3SMatthew Knepley ierr = MatCreate(comm,A);CHKERRQ(ierr); 3256f69a0ea3SMatthew Knepley ierr = MatSetSizes(*A,m,n,M,N);CHKERRQ(ierr); 3257d132466eSBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 3258273d9f13SBarry Smith if (size > 1) { 3259273d9f13SBarry Smith ierr = MatSetType(*A,MATMPIBAIJ);CHKERRQ(ierr); 3260273d9f13SBarry Smith ierr = MatMPIBAIJSetPreallocation(*A,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr); 3261273d9f13SBarry Smith } else { 3262273d9f13SBarry Smith ierr = MatSetType(*A,MATSEQBAIJ);CHKERRQ(ierr); 3263273d9f13SBarry Smith ierr = MatSeqBAIJSetPreallocation(*A,bs,d_nz,d_nnz);CHKERRQ(ierr); 32643914022bSBarry Smith } 32653a40ed3dSBarry Smith PetscFunctionReturn(0); 326679bdfe76SSatish Balay } 3267026e39d0SSatish Balay 32684a2ae208SSatish Balay #undef __FUNCT__ 32694a2ae208SSatish Balay #define __FUNCT__ "MatDuplicate_MPIBAIJ" 32706849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIBAIJ(Mat matin,MatDuplicateOption cpvalues,Mat *newmat) 32710ac07820SSatish Balay { 32720ac07820SSatish Balay Mat mat; 32730ac07820SSatish Balay Mat_MPIBAIJ *a,*oldmat = (Mat_MPIBAIJ*)matin->data; 3274dfbe8321SBarry Smith PetscErrorCode ierr; 3275b24ad042SBarry Smith PetscInt len=0; 32760ac07820SSatish Balay 3277d64ed03dSBarry Smith PetscFunctionBegin; 32780ac07820SSatish Balay *newmat = 0; 32797adad957SLisandro Dalcin ierr = MatCreate(((PetscObject)matin)->comm,&mat);CHKERRQ(ierr); 3280d0f46423SBarry Smith ierr = MatSetSizes(mat,matin->rmap->n,matin->cmap->n,matin->rmap->N,matin->cmap->N);CHKERRQ(ierr); 32817adad957SLisandro Dalcin ierr = MatSetType(mat,((PetscObject)matin)->type_name);CHKERRQ(ierr); 32821d5dac46SHong Zhang ierr = PetscMemcpy(mat->ops,matin->ops,sizeof(struct _MatOps));CHKERRQ(ierr); 32837fff6886SHong Zhang 32844beb1cfeSHong Zhang mat->factor = matin->factor; 3285273d9f13SBarry Smith mat->preallocated = PETSC_TRUE; 32860ac07820SSatish Balay mat->assembled = PETSC_TRUE; 32877fff6886SHong Zhang mat->insertmode = NOT_SET_VALUES; 32887fff6886SHong Zhang 3289273d9f13SBarry Smith a = (Mat_MPIBAIJ*)mat->data; 3290d0f46423SBarry Smith mat->rmap->bs = matin->rmap->bs; 32910ac07820SSatish Balay a->bs2 = oldmat->bs2; 32920ac07820SSatish Balay a->mbs = oldmat->mbs; 32930ac07820SSatish Balay a->nbs = oldmat->nbs; 32940ac07820SSatish Balay a->Mbs = oldmat->Mbs; 32950ac07820SSatish Balay a->Nbs = oldmat->Nbs; 32960ac07820SSatish Balay 329726283091SBarry Smith ierr = PetscLayoutCopy(matin->rmap,&mat->rmap);CHKERRQ(ierr); 329826283091SBarry Smith ierr = PetscLayoutCopy(matin->cmap,&mat->cmap);CHKERRQ(ierr); 3299899cda47SBarry Smith 33000ac07820SSatish Balay a->size = oldmat->size; 33010ac07820SSatish Balay a->rank = oldmat->rank; 3302aef5e8e0SSatish Balay a->donotstash = oldmat->donotstash; 3303aef5e8e0SSatish Balay a->roworiented = oldmat->roworiented; 3304aef5e8e0SSatish Balay a->rowindices = 0; 33050ac07820SSatish Balay a->rowvalues = 0; 33060ac07820SSatish Balay a->getrowactive = PETSC_FALSE; 330730793edcSSatish Balay a->barray = 0; 3308899cda47SBarry Smith a->rstartbs = oldmat->rstartbs; 3309899cda47SBarry Smith a->rendbs = oldmat->rendbs; 3310899cda47SBarry Smith a->cstartbs = oldmat->cstartbs; 3311899cda47SBarry Smith a->cendbs = oldmat->cendbs; 33120ac07820SSatish Balay 3313133cdb44SSatish Balay /* hash table stuff */ 3314133cdb44SSatish Balay a->ht = 0; 3315133cdb44SSatish Balay a->hd = 0; 3316133cdb44SSatish Balay a->ht_size = 0; 3317133cdb44SSatish Balay a->ht_flag = oldmat->ht_flag; 331825fdafccSSatish Balay a->ht_fact = oldmat->ht_fact; 3319133cdb44SSatish Balay a->ht_total_ct = 0; 3320133cdb44SSatish Balay a->ht_insert_ct = 0; 3321133cdb44SSatish Balay 3322899cda47SBarry Smith ierr = PetscMemcpy(a->rangebs,oldmat->rangebs,(a->size+1)*sizeof(PetscInt));CHKERRQ(ierr); 33237adad957SLisandro Dalcin ierr = MatStashCreate_Private(((PetscObject)matin)->comm,1,&mat->stash);CHKERRQ(ierr); 3324d0f46423SBarry Smith ierr = MatStashCreate_Private(((PetscObject)matin)->comm,matin->rmap->bs,&mat->bstash);CHKERRQ(ierr); 33250ac07820SSatish Balay if (oldmat->colmap) { 3326aa482453SBarry Smith #if defined (PETSC_USE_CTABLE) 33270f5bd95cSBarry Smith ierr = PetscTableCreateCopy(oldmat->colmap,&a->colmap);CHKERRQ(ierr); 332848e59246SSatish Balay #else 3329b24ad042SBarry Smith ierr = PetscMalloc((a->Nbs)*sizeof(PetscInt),&a->colmap);CHKERRQ(ierr); 333052e6d16bSBarry Smith ierr = PetscLogObjectMemory(mat,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr); 3331b24ad042SBarry Smith ierr = PetscMemcpy(a->colmap,oldmat->colmap,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr); 333248e59246SSatish Balay #endif 33330ac07820SSatish Balay } else a->colmap = 0; 33344beb1cfeSHong Zhang 33350ac07820SSatish Balay if (oldmat->garray && (len = ((Mat_SeqBAIJ*)(oldmat->B->data))->nbs)) { 3336b24ad042SBarry Smith ierr = PetscMalloc(len*sizeof(PetscInt),&a->garray);CHKERRQ(ierr); 333752e6d16bSBarry Smith ierr = PetscLogObjectMemory(mat,len*sizeof(PetscInt));CHKERRQ(ierr); 3338b24ad042SBarry Smith ierr = PetscMemcpy(a->garray,oldmat->garray,len*sizeof(PetscInt));CHKERRQ(ierr); 33390ac07820SSatish Balay } else a->garray = 0; 33400ac07820SSatish Balay 33410ac07820SSatish Balay ierr = VecDuplicate(oldmat->lvec,&a->lvec);CHKERRQ(ierr); 334252e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->lvec);CHKERRQ(ierr); 33430ac07820SSatish Balay ierr = VecScatterCopy(oldmat->Mvctx,&a->Mvctx);CHKERRQ(ierr); 334452e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->Mvctx);CHKERRQ(ierr); 33457fff6886SHong Zhang 33462e8a6d31SBarry Smith ierr = MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr); 334752e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->A);CHKERRQ(ierr); 33482e8a6d31SBarry Smith ierr = MatDuplicate(oldmat->B,cpvalues,&a->B);CHKERRQ(ierr); 334952e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->B);CHKERRQ(ierr); 33507adad957SLisandro Dalcin ierr = PetscFListDuplicate(((PetscObject)matin)->qlist,&((PetscObject)mat)->qlist);CHKERRQ(ierr); 33510ac07820SSatish Balay *newmat = mat; 33524beb1cfeSHong Zhang 33533a40ed3dSBarry Smith PetscFunctionReturn(0); 33540ac07820SSatish Balay } 335557b952d6SSatish Balay 3356e090d566SSatish Balay #include "petscsys.h" 335757b952d6SSatish Balay 33584a2ae208SSatish Balay #undef __FUNCT__ 33594a2ae208SSatish Balay #define __FUNCT__ "MatLoad_MPIBAIJ" 3360a313700dSBarry Smith PetscErrorCode MatLoad_MPIBAIJ(PetscViewer viewer, const MatType type,Mat *newmat) 336157b952d6SSatish Balay { 336257b952d6SSatish Balay Mat A; 33636849ba73SBarry Smith PetscErrorCode ierr; 3364b24ad042SBarry Smith int fd; 3365b24ad042SBarry Smith PetscInt i,nz,j,rstart,rend; 336687828ca2SBarry Smith PetscScalar *vals,*buf; 336757b952d6SSatish Balay MPI_Comm comm = ((PetscObject)viewer)->comm; 336857b952d6SSatish Balay MPI_Status status; 3369b24ad042SBarry Smith PetscMPIInt rank,size,maxnz; 3370b24ad042SBarry Smith PetscInt header[4],*rowlengths = 0,M,N,m,*rowners,*cols; 3371910ba992SMatthew Knepley PetscInt *locrowlens = PETSC_NULL,*procsnz = PETSC_NULL,*browners = PETSC_NULL; 3372167e7480SBarry Smith PetscInt jj,*mycols,*ibuf,bs=1,Mbs,mbs,extra_rows,mmax; 3373dc231df0SBarry Smith PetscMPIInt tag = ((PetscObject)viewer)->tag; 3374910ba992SMatthew Knepley PetscInt *dlens = PETSC_NULL,*odlens = PETSC_NULL,*mask = PETSC_NULL,*masked1 = PETSC_NULL,*masked2 = PETSC_NULL,rowcount,odcount; 3375dc231df0SBarry Smith PetscInt dcount,kmax,k,nzcount,tmp,mend; 337657b952d6SSatish Balay 3377d64ed03dSBarry Smith PetscFunctionBegin; 337877925062SSatish Balay ierr = PetscOptionsBegin(comm,PETSC_NULL,"Options for loading MPIBAIJ matrix 2","Mat");CHKERRQ(ierr); 33798c07d4e3SBarry Smith ierr = PetscOptionsInt("-matload_block_size","Set the blocksize used to store the matrix","MatLoad",bs,&bs,PETSC_NULL);CHKERRQ(ierr); 33808c07d4e3SBarry Smith ierr = PetscOptionsEnd();CHKERRQ(ierr); 338157b952d6SSatish Balay 3382d132466eSBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 3383d132466eSBarry Smith ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 338457b952d6SSatish Balay if (!rank) { 3385b0a32e0cSBarry Smith ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr); 3386e5638eb3SBarry Smith ierr = PetscBinaryRead(fd,(char *)header,4,PETSC_INT);CHKERRQ(ierr); 3387552e946dSBarry Smith if (header[0] != MAT_FILE_COOKIE) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"not matrix object"); 33886c5fab8fSBarry Smith } 3389d64ed03dSBarry Smith 3390b24ad042SBarry Smith ierr = MPI_Bcast(header+1,3,MPIU_INT,0,comm);CHKERRQ(ierr); 339157b952d6SSatish Balay M = header[1]; N = header[2]; 339257b952d6SSatish Balay 339329bbc08cSBarry Smith if (M != N) SETERRQ(PETSC_ERR_SUP,"Can only do square matrices"); 339457b952d6SSatish Balay 339557b952d6SSatish Balay /* 339657b952d6SSatish Balay This code adds extra rows to make sure the number of rows is 339757b952d6SSatish Balay divisible by the blocksize 339857b952d6SSatish Balay */ 339957b952d6SSatish Balay Mbs = M/bs; 3400dc231df0SBarry Smith extra_rows = bs - M + bs*Mbs; 340157b952d6SSatish Balay if (extra_rows == bs) extra_rows = 0; 340257b952d6SSatish Balay else Mbs++; 340357b952d6SSatish Balay if (extra_rows && !rank) { 34041e2582c4SBarry Smith ierr = PetscInfo(viewer,"Padding loaded matrix to match blocksize\n");CHKERRQ(ierr); 340557b952d6SSatish Balay } 3406537820f0SBarry Smith 340757b952d6SSatish Balay /* determine ownership of all rows */ 340857b952d6SSatish Balay mbs = Mbs/size + ((Mbs % size) > rank); 340957b952d6SSatish Balay m = mbs*bs; 3410dc231df0SBarry Smith ierr = PetscMalloc2(size+1,PetscInt,&rowners,size+1,PetscInt,&browners);CHKERRQ(ierr); 3411b24ad042SBarry Smith ierr = MPI_Allgather(&mbs,1,MPIU_INT,rowners+1,1,MPIU_INT,comm);CHKERRQ(ierr); 3412167e7480SBarry Smith 3413167e7480SBarry Smith /* process 0 needs enough room for process with most rows */ 3414167e7480SBarry Smith if (!rank) { 3415167e7480SBarry Smith mmax = rowners[1]; 3416167e7480SBarry Smith for (i=2; i<size; i++) { 3417167e7480SBarry Smith mmax = PetscMax(mmax,rowners[i]); 3418167e7480SBarry Smith } 3419ca02efcfSSatish Balay mmax*=bs; 3420167e7480SBarry Smith } else mmax = m; 3421167e7480SBarry Smith 342257b952d6SSatish Balay rowners[0] = 0; 3423cee3aa6bSSatish Balay for (i=2; i<=size; i++) rowners[i] += rowners[i-1]; 3424cee3aa6bSSatish Balay for (i=0; i<=size; i++) browners[i] = rowners[i]*bs; 342557b952d6SSatish Balay rstart = rowners[rank]; 342657b952d6SSatish Balay rend = rowners[rank+1]; 342757b952d6SSatish Balay 342857b952d6SSatish Balay /* distribute row lengths to all processors */ 342919c38ff2SBarry Smith ierr = PetscMalloc((mmax+1)*sizeof(PetscInt),&locrowlens);CHKERRQ(ierr); 343057b952d6SSatish Balay if (!rank) { 3431dc231df0SBarry Smith mend = m; 3432dc231df0SBarry Smith if (size == 1) mend = mend - extra_rows; 3433dc231df0SBarry Smith ierr = PetscBinaryRead(fd,locrowlens,mend,PETSC_INT);CHKERRQ(ierr); 3434dc231df0SBarry Smith for (j=mend; j<m; j++) locrowlens[j] = 1; 3435dc231df0SBarry Smith ierr = PetscMalloc(m*sizeof(PetscInt),&rowlengths);CHKERRQ(ierr); 3436b24ad042SBarry Smith ierr = PetscMalloc(size*sizeof(PetscInt),&procsnz);CHKERRQ(ierr); 3437b24ad042SBarry Smith ierr = PetscMemzero(procsnz,size*sizeof(PetscInt));CHKERRQ(ierr); 3438dc231df0SBarry Smith for (j=0; j<m; j++) { 3439dc231df0SBarry Smith procsnz[0] += locrowlens[j]; 3440dc231df0SBarry Smith } 3441dc231df0SBarry Smith for (i=1; i<size; i++) { 3442dc231df0SBarry Smith mend = browners[i+1] - browners[i]; 3443dc231df0SBarry Smith if (i == size-1) mend = mend - extra_rows; 3444dc231df0SBarry Smith ierr = PetscBinaryRead(fd,rowlengths,mend,PETSC_INT);CHKERRQ(ierr); 3445dc231df0SBarry Smith for (j=mend; j<browners[i+1] - browners[i]; j++) rowlengths[j] = 1; 3446dc231df0SBarry Smith /* calculate the number of nonzeros on each processor */ 3447dc231df0SBarry Smith for (j=0; j<browners[i+1]-browners[i]; j++) { 344857b952d6SSatish Balay procsnz[i] += rowlengths[j]; 344957b952d6SSatish Balay } 3450dc231df0SBarry Smith ierr = MPI_Send(rowlengths,browners[i+1]-browners[i],MPIU_INT,i,tag,comm);CHKERRQ(ierr); 345157b952d6SSatish Balay } 3452606d414cSSatish Balay ierr = PetscFree(rowlengths);CHKERRQ(ierr); 3453dc231df0SBarry Smith } else { 3454dc231df0SBarry Smith ierr = MPI_Recv(locrowlens,m,MPIU_INT,0,tag,comm,&status);CHKERRQ(ierr); 3455dc231df0SBarry Smith } 345657b952d6SSatish Balay 3457dc231df0SBarry Smith if (!rank) { 345857b952d6SSatish Balay /* determine max buffer needed and allocate it */ 34598a8e0b3aSBarry Smith maxnz = procsnz[0]; 3460cdc0ba36SBarry Smith for (i=1; i<size; i++) { 346157b952d6SSatish Balay maxnz = PetscMax(maxnz,procsnz[i]); 346257b952d6SSatish Balay } 3463b24ad042SBarry Smith ierr = PetscMalloc(maxnz*sizeof(PetscInt),&cols);CHKERRQ(ierr); 346457b952d6SSatish Balay 346557b952d6SSatish Balay /* read in my part of the matrix column indices */ 346657b952d6SSatish Balay nz = procsnz[0]; 346719c38ff2SBarry Smith ierr = PetscMalloc((nz+1)*sizeof(PetscInt),&ibuf);CHKERRQ(ierr); 346857b952d6SSatish Balay mycols = ibuf; 3469cee3aa6bSSatish Balay if (size == 1) nz -= extra_rows; 3470e5638eb3SBarry Smith ierr = PetscBinaryRead(fd,mycols,nz,PETSC_INT);CHKERRQ(ierr); 3471cee3aa6bSSatish Balay if (size == 1) for (i=0; i< extra_rows; i++) { mycols[nz+i] = M+i; } 3472cee3aa6bSSatish Balay 347357b952d6SSatish Balay /* read in every ones (except the last) and ship off */ 347457b952d6SSatish Balay for (i=1; i<size-1; i++) { 347557b952d6SSatish Balay nz = procsnz[i]; 3476e5638eb3SBarry Smith ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr); 3477b24ad042SBarry Smith ierr = MPI_Send(cols,nz,MPIU_INT,i,tag,comm);CHKERRQ(ierr); 347857b952d6SSatish Balay } 347957b952d6SSatish Balay /* read in the stuff for the last proc */ 348057b952d6SSatish Balay if (size != 1) { 348157b952d6SSatish Balay nz = procsnz[size-1] - extra_rows; /* the extra rows are not on the disk */ 3482e5638eb3SBarry Smith ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr); 348357b952d6SSatish Balay for (i=0; i<extra_rows; i++) cols[nz+i] = M+i; 3484b24ad042SBarry Smith ierr = MPI_Send(cols,nz+extra_rows,MPIU_INT,size-1,tag,comm);CHKERRQ(ierr); 348557b952d6SSatish Balay } 3486606d414cSSatish Balay ierr = PetscFree(cols);CHKERRQ(ierr); 3487d64ed03dSBarry Smith } else { 348857b952d6SSatish Balay /* determine buffer space needed for message */ 348957b952d6SSatish Balay nz = 0; 349057b952d6SSatish Balay for (i=0; i<m; i++) { 349157b952d6SSatish Balay nz += locrowlens[i]; 349257b952d6SSatish Balay } 349319c38ff2SBarry Smith ierr = PetscMalloc((nz+1)*sizeof(PetscInt),&ibuf);CHKERRQ(ierr); 349457b952d6SSatish Balay mycols = ibuf; 349557b952d6SSatish Balay /* receive message of column indices*/ 3496b24ad042SBarry Smith ierr = MPI_Recv(mycols,nz,MPIU_INT,0,tag,comm,&status);CHKERRQ(ierr); 3497b24ad042SBarry Smith ierr = MPI_Get_count(&status,MPIU_INT,&maxnz);CHKERRQ(ierr); 349829bbc08cSBarry Smith if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 349957b952d6SSatish Balay } 350057b952d6SSatish Balay 350157b952d6SSatish Balay /* loop over local rows, determining number of off diagonal entries */ 3502dc231df0SBarry Smith ierr = PetscMalloc2(rend-rstart,PetscInt,&dlens,rend-rstart,PetscInt,&odlens);CHKERRQ(ierr); 3503dc231df0SBarry Smith ierr = PetscMalloc3(Mbs,PetscInt,&mask,Mbs,PetscInt,&masked1,Mbs,PetscInt,&masked2);CHKERRQ(ierr); 3504dc231df0SBarry Smith ierr = PetscMemzero(mask,Mbs*sizeof(PetscInt));CHKERRQ(ierr); 3505dc231df0SBarry Smith ierr = PetscMemzero(masked1,Mbs*sizeof(PetscInt));CHKERRQ(ierr); 3506dc231df0SBarry Smith ierr = PetscMemzero(masked2,Mbs*sizeof(PetscInt));CHKERRQ(ierr); 350757b952d6SSatish Balay rowcount = 0; nzcount = 0; 350857b952d6SSatish Balay for (i=0; i<mbs; i++) { 350957b952d6SSatish Balay dcount = 0; 351057b952d6SSatish Balay odcount = 0; 351157b952d6SSatish Balay for (j=0; j<bs; j++) { 351257b952d6SSatish Balay kmax = locrowlens[rowcount]; 351357b952d6SSatish Balay for (k=0; k<kmax; k++) { 351457b952d6SSatish Balay tmp = mycols[nzcount++]/bs; 351557b952d6SSatish Balay if (!mask[tmp]) { 351657b952d6SSatish Balay mask[tmp] = 1; 351757b952d6SSatish Balay if (tmp < rstart || tmp >= rend) masked2[odcount++] = tmp; 351857b952d6SSatish Balay else masked1[dcount++] = tmp; 351957b952d6SSatish Balay } 352057b952d6SSatish Balay } 352157b952d6SSatish Balay rowcount++; 352257b952d6SSatish Balay } 3523cee3aa6bSSatish Balay 352457b952d6SSatish Balay dlens[i] = dcount; 352557b952d6SSatish Balay odlens[i] = odcount; 3526cee3aa6bSSatish Balay 352757b952d6SSatish Balay /* zero out the mask elements we set */ 352857b952d6SSatish Balay for (j=0; j<dcount; j++) mask[masked1[j]] = 0; 352957b952d6SSatish Balay for (j=0; j<odcount; j++) mask[masked2[j]] = 0; 353057b952d6SSatish Balay } 3531cee3aa6bSSatish Balay 353257b952d6SSatish Balay /* create our matrix */ 3533f69a0ea3SMatthew Knepley ierr = MatCreate(comm,&A);CHKERRQ(ierr); 3534f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,m,m,M+extra_rows,N+extra_rows);CHKERRQ(ierr); 353578ae41b4SKris Buschelman ierr = MatSetType(A,type);CHKERRQ(ierr) 353678ae41b4SKris Buschelman ierr = MatMPIBAIJSetPreallocation(A,bs,0,dlens,0,odlens);CHKERRQ(ierr); 353778ae41b4SKris Buschelman 353857b952d6SSatish Balay if (!rank) { 353919c38ff2SBarry Smith ierr = PetscMalloc((maxnz+1)*sizeof(PetscScalar),&buf);CHKERRQ(ierr); 354057b952d6SSatish Balay /* read in my part of the matrix numerical values */ 354157b952d6SSatish Balay nz = procsnz[0]; 354257b952d6SSatish Balay vals = buf; 3543cee3aa6bSSatish Balay mycols = ibuf; 3544cee3aa6bSSatish Balay if (size == 1) nz -= extra_rows; 3545e5638eb3SBarry Smith ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 3546cee3aa6bSSatish Balay if (size == 1) for (i=0; i< extra_rows; i++) { vals[nz+i] = 1.0; } 3547537820f0SBarry Smith 354857b952d6SSatish Balay /* insert into matrix */ 354957b952d6SSatish Balay jj = rstart*bs; 355057b952d6SSatish Balay for (i=0; i<m; i++) { 3551dc231df0SBarry Smith ierr = MatSetValues_MPIBAIJ(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr); 355257b952d6SSatish Balay mycols += locrowlens[i]; 355357b952d6SSatish Balay vals += locrowlens[i]; 355457b952d6SSatish Balay jj++; 355557b952d6SSatish Balay } 355657b952d6SSatish Balay /* read in other processors (except the last one) and ship out */ 355757b952d6SSatish Balay for (i=1; i<size-1; i++) { 355857b952d6SSatish Balay nz = procsnz[i]; 355957b952d6SSatish Balay vals = buf; 3560e5638eb3SBarry Smith ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 35617adad957SLisandro Dalcin ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,((PetscObject)A)->tag,comm);CHKERRQ(ierr); 356257b952d6SSatish Balay } 356357b952d6SSatish Balay /* the last proc */ 356457b952d6SSatish Balay if (size != 1){ 356557b952d6SSatish Balay nz = procsnz[i] - extra_rows; 3566cee3aa6bSSatish Balay vals = buf; 3567e5638eb3SBarry Smith ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 356857b952d6SSatish Balay for (i=0; i<extra_rows; i++) vals[nz+i] = 1.0; 35697adad957SLisandro Dalcin ierr = MPI_Send(vals,nz+extra_rows,MPIU_SCALAR,size-1,((PetscObject)A)->tag,comm);CHKERRQ(ierr); 357057b952d6SSatish Balay } 3571606d414cSSatish Balay ierr = PetscFree(procsnz);CHKERRQ(ierr); 3572d64ed03dSBarry Smith } else { 357357b952d6SSatish Balay /* receive numeric values */ 357419c38ff2SBarry Smith ierr = PetscMalloc((nz+1)*sizeof(PetscScalar),&buf);CHKERRQ(ierr); 357557b952d6SSatish Balay 357657b952d6SSatish Balay /* receive message of values*/ 357757b952d6SSatish Balay vals = buf; 3578cee3aa6bSSatish Balay mycols = ibuf; 35797adad957SLisandro Dalcin ierr = MPI_Recv(vals,nz,MPIU_SCALAR,0,((PetscObject)A)->tag,comm,&status);CHKERRQ(ierr); 3580ca161407SBarry Smith ierr = MPI_Get_count(&status,MPIU_SCALAR,&maxnz);CHKERRQ(ierr); 358129bbc08cSBarry Smith if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 358257b952d6SSatish Balay 358357b952d6SSatish Balay /* insert into matrix */ 358457b952d6SSatish Balay jj = rstart*bs; 3585cee3aa6bSSatish Balay for (i=0; i<m; i++) { 3586dc231df0SBarry Smith ierr = MatSetValues_MPIBAIJ(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr); 358757b952d6SSatish Balay mycols += locrowlens[i]; 358857b952d6SSatish Balay vals += locrowlens[i]; 358957b952d6SSatish Balay jj++; 359057b952d6SSatish Balay } 359157b952d6SSatish Balay } 3592606d414cSSatish Balay ierr = PetscFree(locrowlens);CHKERRQ(ierr); 3593606d414cSSatish Balay ierr = PetscFree(buf);CHKERRQ(ierr); 3594606d414cSSatish Balay ierr = PetscFree(ibuf);CHKERRQ(ierr); 3595dc231df0SBarry Smith ierr = PetscFree2(rowners,browners);CHKERRQ(ierr); 3596dc231df0SBarry Smith ierr = PetscFree2(dlens,odlens);CHKERRQ(ierr); 3597dc231df0SBarry Smith ierr = PetscFree3(mask,masked1,masked2);CHKERRQ(ierr); 35986d4a8577SBarry Smith ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 35996d4a8577SBarry Smith ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 360078ae41b4SKris Buschelman 360178ae41b4SKris Buschelman *newmat = A; 36023a40ed3dSBarry Smith PetscFunctionReturn(0); 360357b952d6SSatish Balay } 360457b952d6SSatish Balay 36054a2ae208SSatish Balay #undef __FUNCT__ 36064a2ae208SSatish Balay #define __FUNCT__ "MatMPIBAIJSetHashTableFactor" 3607133cdb44SSatish Balay /*@ 3608133cdb44SSatish Balay MatMPIBAIJSetHashTableFactor - Sets the factor required to compute the size of the HashTable. 3609133cdb44SSatish Balay 3610133cdb44SSatish Balay Input Parameters: 3611133cdb44SSatish Balay . mat - the matrix 3612133cdb44SSatish Balay . fact - factor 3613133cdb44SSatish Balay 3614fee21e36SBarry Smith Collective on Mat 3615fee21e36SBarry Smith 36168c890885SBarry Smith Level: advanced 36178c890885SBarry Smith 3618133cdb44SSatish Balay Notes: 36198c07d4e3SBarry Smith This can also be set by the command line option: -mat_use_hash_table <fact> 3620133cdb44SSatish Balay 3621133cdb44SSatish Balay .keywords: matrix, hashtable, factor, HT 3622133cdb44SSatish Balay 3623133cdb44SSatish Balay .seealso: MatSetOption() 3624133cdb44SSatish Balay @*/ 3625be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPIBAIJSetHashTableFactor(Mat mat,PetscReal fact) 3626133cdb44SSatish Balay { 3627dfbe8321SBarry Smith PetscErrorCode ierr,(*f)(Mat,PetscReal); 36285bf65638SKris Buschelman 36295bf65638SKris Buschelman PetscFunctionBegin; 36305bf65638SKris Buschelman ierr = PetscObjectQueryFunction((PetscObject)mat,"MatSetHashTableFactor_C",(void (**)(void))&f);CHKERRQ(ierr); 36315bf65638SKris Buschelman if (f) { 36325bf65638SKris Buschelman ierr = (*f)(mat,fact);CHKERRQ(ierr); 36335bf65638SKris Buschelman } 36345bf65638SKris Buschelman PetscFunctionReturn(0); 36355bf65638SKris Buschelman } 36365bf65638SKris Buschelman 3637be1d678aSKris Buschelman EXTERN_C_BEGIN 36385bf65638SKris Buschelman #undef __FUNCT__ 36395bf65638SKris Buschelman #define __FUNCT__ "MatSetHashTableFactor_MPIBAIJ" 3640be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatSetHashTableFactor_MPIBAIJ(Mat mat,PetscReal fact) 36415bf65638SKris Buschelman { 364225fdafccSSatish Balay Mat_MPIBAIJ *baij; 3643133cdb44SSatish Balay 3644133cdb44SSatish Balay PetscFunctionBegin; 3645133cdb44SSatish Balay baij = (Mat_MPIBAIJ*)mat->data; 3646133cdb44SSatish Balay baij->ht_fact = fact; 3647133cdb44SSatish Balay PetscFunctionReturn(0); 3648133cdb44SSatish Balay } 3649be1d678aSKris Buschelman EXTERN_C_END 3650f2a5309cSSatish Balay 36514a2ae208SSatish Balay #undef __FUNCT__ 36524a2ae208SSatish Balay #define __FUNCT__ "MatMPIBAIJGetSeqBAIJ" 3653be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPIBAIJGetSeqBAIJ(Mat A,Mat *Ad,Mat *Ao,PetscInt *colmap[]) 3654f2a5309cSSatish Balay { 3655f2a5309cSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 3656f2a5309cSSatish Balay PetscFunctionBegin; 3657f2a5309cSSatish Balay *Ad = a->A; 3658f2a5309cSSatish Balay *Ao = a->B; 3659195d93cdSBarry Smith *colmap = a->garray; 3660f2a5309cSSatish Balay PetscFunctionReturn(0); 3661f2a5309cSSatish Balay } 366285535b8eSBarry Smith 366385535b8eSBarry Smith /* 366485535b8eSBarry Smith Special version for direct calls from Fortran (to eliminate two function call overheads 366585535b8eSBarry Smith */ 366685535b8eSBarry Smith #if defined(PETSC_HAVE_FORTRAN_CAPS) 366785535b8eSBarry Smith #define matmpibaijsetvaluesblocked_ MATMPIBAIJSETVALUESBLOCKED 366885535b8eSBarry Smith #elif !defined(PETSC_HAVE_FORTRAN_UNDERSCORE) 366985535b8eSBarry Smith #define matmpibaijsetvaluesblocked_ matmpibaijsetvaluesblocked 367085535b8eSBarry Smith #endif 367185535b8eSBarry Smith 367285535b8eSBarry Smith #undef __FUNCT__ 367385535b8eSBarry Smith #define __FUNCT__ "matmpibiajsetvaluesblocked" 367485535b8eSBarry Smith /*@C 367585535b8eSBarry Smith MatMPIBAIJSetValuesBlocked - Direct Fortran call to replace call to MatSetValuesBlocked() 367685535b8eSBarry Smith 367785535b8eSBarry Smith Collective on Mat 367885535b8eSBarry Smith 367985535b8eSBarry Smith Input Parameters: 368085535b8eSBarry Smith + mat - the matrix 368185535b8eSBarry Smith . min - number of input rows 368285535b8eSBarry Smith . im - input rows 368385535b8eSBarry Smith . nin - number of input columns 368485535b8eSBarry Smith . in - input columns 368585535b8eSBarry Smith . v - numerical values input 368685535b8eSBarry Smith - addvin - INSERT_VALUES or ADD_VALUES 368785535b8eSBarry Smith 368885535b8eSBarry Smith Notes: This has a complete copy of MatSetValuesBlocked_MPIBAIJ() which is terrible code un-reuse. 368985535b8eSBarry Smith 369085535b8eSBarry Smith Level: advanced 369185535b8eSBarry Smith 369285535b8eSBarry Smith .seealso: MatSetValuesBlocked() 369385535b8eSBarry Smith @*/ 369485535b8eSBarry Smith PetscErrorCode matmpibaijsetvaluesblocked_(Mat *matin,PetscInt *min,const PetscInt im[],PetscInt *nin,const PetscInt in[],const MatScalar v[],InsertMode *addvin) 369585535b8eSBarry Smith { 369685535b8eSBarry Smith /* convert input arguments to C version */ 369785535b8eSBarry Smith Mat mat = *matin; 369885535b8eSBarry Smith PetscInt m = *min, n = *nin; 369985535b8eSBarry Smith InsertMode addv = *addvin; 370085535b8eSBarry Smith 370185535b8eSBarry Smith Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 370285535b8eSBarry Smith const MatScalar *value; 370385535b8eSBarry Smith MatScalar *barray=baij->barray; 370485535b8eSBarry Smith PetscTruth roworiented = baij->roworiented; 370585535b8eSBarry Smith PetscErrorCode ierr; 370685535b8eSBarry Smith PetscInt i,j,ii,jj,row,col,rstart=baij->rstartbs; 370785535b8eSBarry Smith PetscInt rend=baij->rendbs,cstart=baij->cstartbs,stepval; 3708d0f46423SBarry Smith PetscInt cend=baij->cendbs,bs=mat->rmap->bs,bs2=baij->bs2; 370985535b8eSBarry Smith 371085535b8eSBarry Smith PetscFunctionBegin; 371185535b8eSBarry Smith /* tasks normally handled by MatSetValuesBlocked() */ 371285535b8eSBarry Smith if (mat->insertmode == NOT_SET_VALUES) { 371385535b8eSBarry Smith mat->insertmode = addv; 371485535b8eSBarry Smith } 371585535b8eSBarry Smith #if defined(PETSC_USE_DEBUG) 371685535b8eSBarry Smith else if (mat->insertmode != addv) { 371785535b8eSBarry Smith SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Cannot mix add values and insert values"); 371885535b8eSBarry Smith } 371985535b8eSBarry Smith if (mat->factor) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Not for factored matrix"); 372085535b8eSBarry Smith #endif 372185535b8eSBarry Smith if (mat->assembled) { 372285535b8eSBarry Smith mat->was_assembled = PETSC_TRUE; 372385535b8eSBarry Smith mat->assembled = PETSC_FALSE; 372485535b8eSBarry Smith } 372585535b8eSBarry Smith ierr = PetscLogEventBegin(MAT_SetValues,mat,0,0,0);CHKERRQ(ierr); 372685535b8eSBarry Smith 372785535b8eSBarry Smith 372885535b8eSBarry Smith if(!barray) { 372985535b8eSBarry Smith ierr = PetscMalloc(bs2*sizeof(MatScalar),&barray);CHKERRQ(ierr); 373085535b8eSBarry Smith baij->barray = barray; 373185535b8eSBarry Smith } 373285535b8eSBarry Smith 373385535b8eSBarry Smith if (roworiented) { 373485535b8eSBarry Smith stepval = (n-1)*bs; 373585535b8eSBarry Smith } else { 373685535b8eSBarry Smith stepval = (m-1)*bs; 373785535b8eSBarry Smith } 373885535b8eSBarry Smith for (i=0; i<m; i++) { 373985535b8eSBarry Smith if (im[i] < 0) continue; 374085535b8eSBarry Smith #if defined(PETSC_USE_DEBUG) 374185535b8eSBarry Smith if (im[i] >= baij->Mbs) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large, row %D max %D",im[i],baij->Mbs-1); 374285535b8eSBarry Smith #endif 374385535b8eSBarry Smith if (im[i] >= rstart && im[i] < rend) { 374485535b8eSBarry Smith row = im[i] - rstart; 374585535b8eSBarry Smith for (j=0; j<n; j++) { 374685535b8eSBarry Smith /* If NumCol = 1 then a copy is not required */ 374785535b8eSBarry Smith if ((roworiented) && (n == 1)) { 374885535b8eSBarry Smith barray = (MatScalar*)v + i*bs2; 374985535b8eSBarry Smith } else if((!roworiented) && (m == 1)) { 375085535b8eSBarry Smith barray = (MatScalar*)v + j*bs2; 375185535b8eSBarry Smith } else { /* Here a copy is required */ 375285535b8eSBarry Smith if (roworiented) { 375385535b8eSBarry Smith value = v + i*(stepval+bs)*bs + j*bs; 375485535b8eSBarry Smith } else { 375585535b8eSBarry Smith value = v + j*(stepval+bs)*bs + i*bs; 375685535b8eSBarry Smith } 375785535b8eSBarry Smith for (ii=0; ii<bs; ii++,value+=stepval) { 375885535b8eSBarry Smith for (jj=0; jj<bs; jj++) { 375985535b8eSBarry Smith *barray++ = *value++; 376085535b8eSBarry Smith } 376185535b8eSBarry Smith } 376285535b8eSBarry Smith barray -=bs2; 376385535b8eSBarry Smith } 376485535b8eSBarry Smith 376585535b8eSBarry Smith if (in[j] >= cstart && in[j] < cend){ 376685535b8eSBarry Smith col = in[j] - cstart; 376797e5c40aSBarry Smith ierr = MatSetValuesBlocked_SeqBAIJ(baij->A,1,&row,1,&col,barray,addv);CHKERRQ(ierr); 376885535b8eSBarry Smith } 376985535b8eSBarry Smith else if (in[j] < 0) continue; 377085535b8eSBarry Smith #if defined(PETSC_USE_DEBUG) 377185535b8eSBarry Smith else if (in[j] >= baij->Nbs) {SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large, col %D max %D",in[j],baij->Nbs-1);} 377285535b8eSBarry Smith #endif 377385535b8eSBarry Smith else { 377485535b8eSBarry Smith if (mat->was_assembled) { 377585535b8eSBarry Smith if (!baij->colmap) { 377685535b8eSBarry Smith ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 377785535b8eSBarry Smith } 377885535b8eSBarry Smith 377985535b8eSBarry Smith #if defined(PETSC_USE_DEBUG) 378085535b8eSBarry Smith #if defined (PETSC_USE_CTABLE) 378185535b8eSBarry Smith { PetscInt data; 378285535b8eSBarry Smith ierr = PetscTableFind(baij->colmap,in[j]+1,&data);CHKERRQ(ierr); 378385535b8eSBarry Smith if ((data - 1) % bs) SETERRQ(PETSC_ERR_PLIB,"Incorrect colmap"); 378485535b8eSBarry Smith } 378585535b8eSBarry Smith #else 378685535b8eSBarry Smith if ((baij->colmap[in[j]] - 1) % bs) SETERRQ(PETSC_ERR_PLIB,"Incorrect colmap"); 378785535b8eSBarry Smith #endif 378885535b8eSBarry Smith #endif 378985535b8eSBarry Smith #if defined (PETSC_USE_CTABLE) 379085535b8eSBarry Smith ierr = PetscTableFind(baij->colmap,in[j]+1,&col);CHKERRQ(ierr); 379185535b8eSBarry Smith col = (col - 1)/bs; 379285535b8eSBarry Smith #else 379385535b8eSBarry Smith col = (baij->colmap[in[j]] - 1)/bs; 379485535b8eSBarry Smith #endif 379585535b8eSBarry Smith if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) { 379685535b8eSBarry Smith ierr = DisAssemble_MPIBAIJ(mat);CHKERRQ(ierr); 379785535b8eSBarry Smith col = in[j]; 379885535b8eSBarry Smith } 379985535b8eSBarry Smith } 380085535b8eSBarry Smith else col = in[j]; 380197e5c40aSBarry Smith ierr = MatSetValuesBlocked_SeqBAIJ(baij->B,1,&row,1,&col,barray,addv);CHKERRQ(ierr); 380285535b8eSBarry Smith } 380385535b8eSBarry Smith } 380485535b8eSBarry Smith } else { 380585535b8eSBarry Smith if (!baij->donotstash) { 380685535b8eSBarry Smith if (roworiented) { 380785535b8eSBarry Smith ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 380885535b8eSBarry Smith } else { 380985535b8eSBarry Smith ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 381085535b8eSBarry Smith } 381185535b8eSBarry Smith } 381285535b8eSBarry Smith } 381385535b8eSBarry Smith } 381485535b8eSBarry Smith 381585535b8eSBarry Smith /* task normally handled by MatSetValuesBlocked() */ 381685535b8eSBarry Smith ierr = PetscLogEventEnd(MAT_SetValues,mat,0,0,0);CHKERRQ(ierr); 381785535b8eSBarry Smith PetscFunctionReturn(0); 381885535b8eSBarry Smith } 3819