179bdfe76SSatish Balay 2e090d566SSatish Balay #include "src/mat/impls/baij/mpi/mpibaij.h" /*I "petscmat.h" I*/ 379bdfe76SSatish Balay 4dfbe8321SBarry Smith EXTERN PetscErrorCode MatSetUpMultiply_MPIBAIJ(Mat); 5dfbe8321SBarry Smith EXTERN PetscErrorCode DisAssemble_MPIBAIJ(Mat); 6*b24ad042SBarry Smith EXTERN PetscErrorCode MatIncreaseOverlap_MPIBAIJ(Mat,PetscInt,IS[],PetscInt); 7*b24ad042SBarry Smith EXTERN PetscErrorCode MatGetSubMatrices_MPIBAIJ(Mat,PetscInt,const IS[],const IS[],MatReuse,Mat *[]); 8*b24ad042SBarry Smith EXTERN PetscErrorCode MatGetValues_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt [],PetscScalar []); 9*b24ad042SBarry Smith EXTERN PetscErrorCode MatSetValues_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt [],const PetscScalar [],InsertMode); 10*b24ad042SBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode); 11*b24ad042SBarry Smith EXTERN PetscErrorCode MatGetRow_SeqBAIJ(Mat,PetscInt,PetscInt*,PetscInt*[],PetscScalar*[]); 12*b24ad042SBarry Smith EXTERN PetscErrorCode MatRestoreRow_SeqBAIJ(Mat,PetscInt,PetscInt*,PetscInt*[],PetscScalar*[]); 13dfbe8321SBarry Smith EXTERN PetscErrorCode MatPrintHelp_SeqBAIJ(Mat); 14dfbe8321SBarry Smith EXTERN PetscErrorCode MatZeroRows_SeqBAIJ(Mat,IS,const PetscScalar*); 1593fea6afSBarry Smith 1693fea6afSBarry Smith /* UGLY, ugly, ugly 1787828ca2SBarry Smith When MatScalar == PetscScalar the function MatSetValuesBlocked_MPIBAIJ_MatScalar() does 1893fea6afSBarry Smith not exist. Otherwise ..._MatScalar() takes matrix elements in single precision and 1993fea6afSBarry Smith inserts them into the single precision data structure. The function MatSetValuesBlocked_MPIBAIJ() 2093fea6afSBarry Smith converts the entries into single precision and then calls ..._MatScalar() to put them 2193fea6afSBarry Smith into the single precision data structures. 2293fea6afSBarry Smith */ 2393fea6afSBarry Smith #if defined(PETSC_USE_MAT_SINGLE) 24*b24ad042SBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_SeqBAIJ_MatScalar(Mat,PetscInt,const PetscInt*,PetscInt,const PetscInt*,const MatScalar*,InsertMode); 25*b24ad042SBarry Smith EXTERN PetscErrorCode MatSetValues_MPIBAIJ_MatScalar(Mat,PetscInt,const PetscInt*,PetscInt,const PetscInt*,const MatScalar*,InsertMode); 26*b24ad042SBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_MPIBAIJ_MatScalar(Mat,PetscInt,const PetscInt*,PetscInt,const PetscInt*,const MatScalar*,InsertMode); 27*b24ad042SBarry Smith EXTERN PetscErrorCode MatSetValues_MPIBAIJ_HT_MatScalar(Mat,PetscInt,const PetscInt*,PetscInt,const PetscInt*,const MatScalar*,InsertMode); 28*b24ad042SBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_MPIBAIJ_HT_MatScalar(Mat,PetscInt,const PetscInt*,PetscInt,const PetscInt*,const MatScalar*,InsertMode); 2993fea6afSBarry Smith #else 306fa18ffdSBarry Smith #define MatSetValuesBlocked_SeqBAIJ_MatScalar MatSetValuesBlocked_SeqBAIJ 3193fea6afSBarry Smith #define MatSetValues_MPIBAIJ_MatScalar MatSetValues_MPIBAIJ 3293fea6afSBarry Smith #define MatSetValuesBlocked_MPIBAIJ_MatScalar MatSetValuesBlocked_MPIBAIJ 336fa18ffdSBarry Smith #define MatSetValues_MPIBAIJ_HT_MatScalar MatSetValues_MPIBAIJ_HT 346fa18ffdSBarry Smith #define MatSetValuesBlocked_MPIBAIJ_HT_MatScalar MatSetValuesBlocked_MPIBAIJ_HT 3593fea6afSBarry Smith #endif 363b2fbd54SBarry Smith 374a2ae208SSatish Balay #undef __FUNCT__ 384a2ae208SSatish Balay #define __FUNCT__ "MatGetRowMax_MPIBAIJ" 39dfbe8321SBarry Smith PetscErrorCode MatGetRowMax_MPIBAIJ(Mat A,Vec v) 407843d17aSBarry Smith { 417843d17aSBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 42dfbe8321SBarry Smith PetscErrorCode ierr; 43*b24ad042SBarry Smith PetscInt i; 4487828ca2SBarry Smith PetscScalar *va,*vb; 457843d17aSBarry Smith Vec vtmp; 467843d17aSBarry Smith 477843d17aSBarry Smith PetscFunctionBegin; 487843d17aSBarry Smith 497843d17aSBarry Smith ierr = MatGetRowMax(a->A,v);CHKERRQ(ierr); 501ebc52fbSHong Zhang ierr = VecGetArray(v,&va);CHKERRQ(ierr); 517843d17aSBarry Smith 52ac355199SBarry Smith ierr = VecCreateSeq(PETSC_COMM_SELF,A->m,&vtmp);CHKERRQ(ierr); 537843d17aSBarry Smith ierr = MatGetRowMax(a->B,vtmp);CHKERRQ(ierr); 541ebc52fbSHong Zhang ierr = VecGetArray(vtmp,&vb);CHKERRQ(ierr); 557843d17aSBarry Smith 56273d9f13SBarry Smith for (i=0; i<A->m; i++){ 57273d9f13SBarry Smith if (PetscAbsScalar(va[i]) < PetscAbsScalar(vb[i])) va[i] = vb[i]; 587843d17aSBarry Smith } 597843d17aSBarry Smith 601ebc52fbSHong Zhang ierr = VecRestoreArray(v,&va);CHKERRQ(ierr); 611ebc52fbSHong Zhang ierr = VecRestoreArray(vtmp,&vb);CHKERRQ(ierr); 62ac355199SBarry Smith ierr = VecDestroy(vtmp);CHKERRQ(ierr); 637843d17aSBarry Smith 647843d17aSBarry Smith PetscFunctionReturn(0); 657843d17aSBarry Smith } 667843d17aSBarry Smith 677fc3c18eSBarry Smith EXTERN_C_BEGIN 684a2ae208SSatish Balay #undef __FUNCT__ 694a2ae208SSatish Balay #define __FUNCT__ "MatStoreValues_MPIBAIJ" 70dfbe8321SBarry Smith PetscErrorCode MatStoreValues_MPIBAIJ(Mat mat) 717fc3c18eSBarry Smith { 727fc3c18eSBarry Smith Mat_MPIBAIJ *aij = (Mat_MPIBAIJ *)mat->data; 73dfbe8321SBarry Smith PetscErrorCode ierr; 747fc3c18eSBarry Smith 757fc3c18eSBarry Smith PetscFunctionBegin; 767fc3c18eSBarry Smith ierr = MatStoreValues(aij->A);CHKERRQ(ierr); 777fc3c18eSBarry Smith ierr = MatStoreValues(aij->B);CHKERRQ(ierr); 787fc3c18eSBarry Smith PetscFunctionReturn(0); 797fc3c18eSBarry Smith } 807fc3c18eSBarry Smith EXTERN_C_END 817fc3c18eSBarry Smith 827fc3c18eSBarry Smith EXTERN_C_BEGIN 834a2ae208SSatish Balay #undef __FUNCT__ 844a2ae208SSatish Balay #define __FUNCT__ "MatRetrieveValues_MPIBAIJ" 85dfbe8321SBarry Smith PetscErrorCode MatRetrieveValues_MPIBAIJ(Mat mat) 867fc3c18eSBarry Smith { 877fc3c18eSBarry Smith Mat_MPIBAIJ *aij = (Mat_MPIBAIJ *)mat->data; 88dfbe8321SBarry Smith PetscErrorCode ierr; 897fc3c18eSBarry Smith 907fc3c18eSBarry Smith PetscFunctionBegin; 917fc3c18eSBarry Smith ierr = MatRetrieveValues(aij->A);CHKERRQ(ierr); 927fc3c18eSBarry Smith ierr = MatRetrieveValues(aij->B);CHKERRQ(ierr); 937fc3c18eSBarry Smith PetscFunctionReturn(0); 947fc3c18eSBarry Smith } 957fc3c18eSBarry Smith EXTERN_C_END 967fc3c18eSBarry Smith 97537820f0SBarry Smith /* 98537820f0SBarry Smith Local utility routine that creates a mapping from the global column 9957b952d6SSatish Balay number to the local number in the off-diagonal part of the local 10057b952d6SSatish Balay storage of the matrix. This is done in a non scable way since the 10157b952d6SSatish Balay length of colmap equals the global matrix length. 10257b952d6SSatish Balay */ 1034a2ae208SSatish Balay #undef __FUNCT__ 1044a2ae208SSatish Balay #define __FUNCT__ "CreateColmap_MPIBAIJ_Private" 105dfbe8321SBarry Smith PetscErrorCode CreateColmap_MPIBAIJ_Private(Mat mat) 10657b952d6SSatish Balay { 10757b952d6SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 10857b952d6SSatish Balay Mat_SeqBAIJ *B = (Mat_SeqBAIJ*)baij->B->data; 1096849ba73SBarry Smith PetscErrorCode ierr; 110*b24ad042SBarry Smith PetscInt nbs = B->nbs,i,bs=B->bs; 11157b952d6SSatish Balay 112d64ed03dSBarry Smith PetscFunctionBegin; 113aa482453SBarry Smith #if defined (PETSC_USE_CTABLE) 114f14a1c24SBarry Smith ierr = PetscTableCreate(baij->nbs,&baij->colmap);CHKERRQ(ierr); 11548e59246SSatish Balay for (i=0; i<nbs; i++){ 1160f5bd95cSBarry Smith ierr = PetscTableAdd(baij->colmap,baij->garray[i]+1,i*bs+1);CHKERRQ(ierr); 11748e59246SSatish Balay } 11848e59246SSatish Balay #else 119*b24ad042SBarry Smith ierr = PetscMalloc((baij->Nbs+1)*sizeof(PetscInt),&baij->colmap);CHKERRQ(ierr); 120*b24ad042SBarry Smith PetscLogObjectMemory(mat,baij->Nbs*sizeof(PetscInt)); 121*b24ad042SBarry Smith ierr = PetscMemzero(baij->colmap,baij->Nbs*sizeof(PetscInt));CHKERRQ(ierr); 122928fc39bSSatish Balay for (i=0; i<nbs; i++) baij->colmap[baij->garray[i]] = i*bs+1; 12348e59246SSatish Balay #endif 1243a40ed3dSBarry Smith PetscFunctionReturn(0); 12557b952d6SSatish Balay } 12657b952d6SSatish Balay 12780c1aa95SSatish Balay #define CHUNKSIZE 10 12880c1aa95SSatish Balay 129f5e9677aSSatish Balay #define MatSetValues_SeqBAIJ_A_Private(row,col,value,addv) \ 13080c1aa95SSatish Balay { \ 13180c1aa95SSatish Balay \ 13280c1aa95SSatish Balay brow = row/bs; \ 13380c1aa95SSatish Balay rp = aj + ai[brow]; ap = aa + bs2*ai[brow]; \ 134ac7a638eSSatish Balay rmax = aimax[brow]; nrow = ailen[brow]; \ 13580c1aa95SSatish Balay bcol = col/bs; \ 13680c1aa95SSatish Balay ridx = row % bs; cidx = col % bs; \ 137ab26458aSBarry Smith low = 0; high = nrow; \ 138ab26458aSBarry Smith while (high-low > 3) { \ 139ab26458aSBarry Smith t = (low+high)/2; \ 140ab26458aSBarry Smith if (rp[t] > bcol) high = t; \ 141ab26458aSBarry Smith else low = t; \ 142ab26458aSBarry Smith } \ 143ab26458aSBarry Smith for (_i=low; _i<high; _i++) { \ 14480c1aa95SSatish Balay if (rp[_i] > bcol) break; \ 14580c1aa95SSatish Balay if (rp[_i] == bcol) { \ 14680c1aa95SSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 147eada6651SSatish Balay if (addv == ADD_VALUES) *bap += value; \ 148eada6651SSatish Balay else *bap = value; \ 149ac7a638eSSatish Balay goto a_noinsert; \ 15080c1aa95SSatish Balay } \ 15180c1aa95SSatish Balay } \ 15289280ab3SLois Curfman McInnes if (a->nonew == 1) goto a_noinsert; \ 153a45adfd6SMatthew Knepley else if (a->nonew == -1) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%d, %d) into matrix", row, col); \ 15480c1aa95SSatish Balay if (nrow >= rmax) { \ 15580c1aa95SSatish Balay /* there is no extra room in row, therefore enlarge */ \ 156*b24ad042SBarry Smith PetscInt new_nz = ai[a->mbs] + CHUNKSIZE,len,*new_i,*new_j; \ 1573eda8832SBarry Smith MatScalar *new_a; \ 15880c1aa95SSatish Balay \ 159a45adfd6SMatthew Knepley if (a->nonew == -2) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%d, %d) in the matrix", row, col); \ 16089280ab3SLois Curfman McInnes \ 16180c1aa95SSatish Balay /* malloc new storage space */ \ 162*b24ad042SBarry Smith len = new_nz*(sizeof(PetscInt)+bs2*sizeof(MatScalar))+(a->mbs+1)*sizeof(PetscInt); \ 16382502324SSatish Balay ierr = PetscMalloc(len,&new_a);CHKERRQ(ierr); \ 164*b24ad042SBarry Smith new_j = (PetscInt*)(new_a + bs2*new_nz); \ 16580c1aa95SSatish Balay new_i = new_j + new_nz; \ 16680c1aa95SSatish Balay \ 16780c1aa95SSatish Balay /* copy over old data into new slots */ \ 16880c1aa95SSatish Balay for (ii=0; ii<brow+1; ii++) {new_i[ii] = ai[ii];} \ 16980c1aa95SSatish Balay for (ii=brow+1; ii<a->mbs+1; ii++) {new_i[ii] = ai[ii]+CHUNKSIZE;} \ 170*b24ad042SBarry Smith ierr = PetscMemcpy(new_j,aj,(ai[brow]+nrow)*sizeof(PetscInt));CHKERRQ(ierr); \ 17180c1aa95SSatish Balay len = (new_nz - CHUNKSIZE - ai[brow] - nrow); \ 172*b24ad042SBarry Smith ierr = PetscMemcpy(new_j+ai[brow]+nrow+CHUNKSIZE,aj+ai[brow]+nrow,len*sizeof(PetscInt));CHKERRQ(ierr); \ 1733eda8832SBarry Smith ierr = PetscMemcpy(new_a,aa,(ai[brow]+nrow)*bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 17487828ca2SBarry Smith ierr = PetscMemzero(new_a+bs2*(ai[brow]+nrow),bs2*CHUNKSIZE*sizeof(PetscScalar));CHKERRQ(ierr); \ 175549d3d68SSatish Balay ierr = PetscMemcpy(new_a+bs2*(ai[brow]+nrow+CHUNKSIZE), \ 1763eda8832SBarry Smith aa+bs2*(ai[brow]+nrow),bs2*len*sizeof(MatScalar));CHKERRQ(ierr); \ 17780c1aa95SSatish Balay /* free up old matrix storage */ \ 178606d414cSSatish Balay ierr = PetscFree(a->a);CHKERRQ(ierr); \ 179606d414cSSatish Balay if (!a->singlemalloc) { \ 180606d414cSSatish Balay ierr = PetscFree(a->i);CHKERRQ(ierr); \ 181606d414cSSatish Balay ierr = PetscFree(a->j);CHKERRQ(ierr);\ 182606d414cSSatish Balay } \ 18380c1aa95SSatish Balay aa = a->a = new_a; ai = a->i = new_i; aj = a->j = new_j; \ 1847c922b88SBarry Smith a->singlemalloc = PETSC_TRUE; \ 18580c1aa95SSatish Balay \ 18680c1aa95SSatish Balay rp = aj + ai[brow]; ap = aa + bs2*ai[brow]; \ 187ac7a638eSSatish Balay rmax = aimax[brow] = aimax[brow] + CHUNKSIZE; \ 188*b24ad042SBarry Smith PetscLogObjectMemory(A,CHUNKSIZE*(sizeof(PetscInt) + bs2*sizeof(MatScalar))); \ 18980c1aa95SSatish Balay a->maxnz += bs2*CHUNKSIZE; \ 19080c1aa95SSatish Balay a->reallocs++; \ 19180c1aa95SSatish Balay a->nz++; \ 19280c1aa95SSatish Balay } \ 19380c1aa95SSatish Balay N = nrow++ - 1; \ 19480c1aa95SSatish Balay /* shift up all the later entries in this row */ \ 19580c1aa95SSatish Balay for (ii=N; ii>=_i; ii--) { \ 19680c1aa95SSatish Balay rp[ii+1] = rp[ii]; \ 1973eda8832SBarry Smith ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 19880c1aa95SSatish Balay } \ 1993eda8832SBarry Smith if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr); } \ 20080c1aa95SSatish Balay rp[_i] = bcol; \ 20180c1aa95SSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 202ac7a638eSSatish Balay a_noinsert:; \ 20380c1aa95SSatish Balay ailen[brow] = nrow; \ 20480c1aa95SSatish Balay } 20557b952d6SSatish Balay 206ac7a638eSSatish Balay #define MatSetValues_SeqBAIJ_B_Private(row,col,value,addv) \ 207ac7a638eSSatish Balay { \ 208ac7a638eSSatish Balay brow = row/bs; \ 209ac7a638eSSatish Balay rp = bj + bi[brow]; ap = ba + bs2*bi[brow]; \ 210ac7a638eSSatish Balay rmax = bimax[brow]; nrow = bilen[brow]; \ 211ac7a638eSSatish Balay bcol = col/bs; \ 212ac7a638eSSatish Balay ridx = row % bs; cidx = col % bs; \ 213ac7a638eSSatish Balay low = 0; high = nrow; \ 214ac7a638eSSatish Balay while (high-low > 3) { \ 215ac7a638eSSatish Balay t = (low+high)/2; \ 216ac7a638eSSatish Balay if (rp[t] > bcol) high = t; \ 217ac7a638eSSatish Balay else low = t; \ 218ac7a638eSSatish Balay } \ 219ac7a638eSSatish Balay for (_i=low; _i<high; _i++) { \ 220ac7a638eSSatish Balay if (rp[_i] > bcol) break; \ 221ac7a638eSSatish Balay if (rp[_i] == bcol) { \ 222ac7a638eSSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 223ac7a638eSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 224ac7a638eSSatish Balay else *bap = value; \ 225ac7a638eSSatish Balay goto b_noinsert; \ 226ac7a638eSSatish Balay } \ 227ac7a638eSSatish Balay } \ 22889280ab3SLois Curfman McInnes if (b->nonew == 1) goto b_noinsert; \ 229a45adfd6SMatthew Knepley else if (b->nonew == -1) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%d, %d) into matrix", row, col); \ 230ac7a638eSSatish Balay if (nrow >= rmax) { \ 231ac7a638eSSatish Balay /* there is no extra room in row, therefore enlarge */ \ 232*b24ad042SBarry Smith PetscInt new_nz = bi[b->mbs] + CHUNKSIZE,len,*new_i,*new_j; \ 2333eda8832SBarry Smith MatScalar *new_a; \ 234ac7a638eSSatish Balay \ 235a45adfd6SMatthew Knepley if (b->nonew == -2) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%d, %d) in the matrix", row, col); \ 23689280ab3SLois Curfman McInnes \ 237ac7a638eSSatish Balay /* malloc new storage space */ \ 238*b24ad042SBarry Smith len = new_nz*(sizeof(PetscInt)+bs2*sizeof(MatScalar))+(b->mbs+1)*sizeof(PetscInt); \ 23982502324SSatish Balay ierr = PetscMalloc(len,&new_a);CHKERRQ(ierr); \ 240*b24ad042SBarry Smith new_j = (PetscInt*)(new_a + bs2*new_nz); \ 241ac7a638eSSatish Balay new_i = new_j + new_nz; \ 242ac7a638eSSatish Balay \ 243ac7a638eSSatish Balay /* copy over old data into new slots */ \ 244ac7a638eSSatish Balay for (ii=0; ii<brow+1; ii++) {new_i[ii] = bi[ii];} \ 24574c639caSSatish Balay for (ii=brow+1; ii<b->mbs+1; ii++) {new_i[ii] = bi[ii]+CHUNKSIZE;} \ 246*b24ad042SBarry Smith ierr = PetscMemcpy(new_j,bj,(bi[brow]+nrow)*sizeof(PetscInt));CHKERRQ(ierr); \ 247ac7a638eSSatish Balay len = (new_nz - CHUNKSIZE - bi[brow] - nrow); \ 248*b24ad042SBarry Smith ierr = PetscMemcpy(new_j+bi[brow]+nrow+CHUNKSIZE,bj+bi[brow]+nrow,len*sizeof(PetscInt));CHKERRQ(ierr); \ 2493eda8832SBarry Smith ierr = PetscMemcpy(new_a,ba,(bi[brow]+nrow)*bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 2503eda8832SBarry Smith ierr = PetscMemzero(new_a+bs2*(bi[brow]+nrow),bs2*CHUNKSIZE*sizeof(MatScalar));CHKERRQ(ierr); \ 251549d3d68SSatish Balay ierr = PetscMemcpy(new_a+bs2*(bi[brow]+nrow+CHUNKSIZE), \ 2523eda8832SBarry Smith ba+bs2*(bi[brow]+nrow),bs2*len*sizeof(MatScalar));CHKERRQ(ierr); \ 253ac7a638eSSatish Balay /* free up old matrix storage */ \ 254606d414cSSatish Balay ierr = PetscFree(b->a);CHKERRQ(ierr); \ 255606d414cSSatish Balay if (!b->singlemalloc) { \ 256606d414cSSatish Balay ierr = PetscFree(b->i);CHKERRQ(ierr); \ 257606d414cSSatish Balay ierr = PetscFree(b->j);CHKERRQ(ierr); \ 258606d414cSSatish Balay } \ 25974c639caSSatish Balay ba = b->a = new_a; bi = b->i = new_i; bj = b->j = new_j; \ 2607c922b88SBarry Smith b->singlemalloc = PETSC_TRUE; \ 261ac7a638eSSatish Balay \ 262ac7a638eSSatish Balay rp = bj + bi[brow]; ap = ba + bs2*bi[brow]; \ 263ac7a638eSSatish Balay rmax = bimax[brow] = bimax[brow] + CHUNKSIZE; \ 264*b24ad042SBarry Smith PetscLogObjectMemory(B,CHUNKSIZE*(sizeof(PetscInt) + bs2*sizeof(MatScalar))); \ 26574c639caSSatish Balay b->maxnz += bs2*CHUNKSIZE; \ 26674c639caSSatish Balay b->reallocs++; \ 26774c639caSSatish Balay b->nz++; \ 268ac7a638eSSatish Balay } \ 269ac7a638eSSatish Balay N = nrow++ - 1; \ 270ac7a638eSSatish Balay /* shift up all the later entries in this row */ \ 271ac7a638eSSatish Balay for (ii=N; ii>=_i; ii--) { \ 272ac7a638eSSatish Balay rp[ii+1] = rp[ii]; \ 2733eda8832SBarry Smith ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 274ac7a638eSSatish Balay } \ 2753eda8832SBarry Smith if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr);} \ 276ac7a638eSSatish Balay rp[_i] = bcol; \ 277ac7a638eSSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 278ac7a638eSSatish Balay b_noinsert:; \ 279ac7a638eSSatish Balay bilen[brow] = nrow; \ 280ac7a638eSSatish Balay } 281ac7a638eSSatish Balay 28293fea6afSBarry Smith #if defined(PETSC_USE_MAT_SINGLE) 2834a2ae208SSatish Balay #undef __FUNCT__ 2844a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_MPIBAIJ" 285*b24ad042SBarry Smith PetscErrorCode MatSetValues_MPIBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv) 28657b952d6SSatish Balay { 2876fa18ffdSBarry Smith Mat_MPIBAIJ *b = (Mat_MPIBAIJ*)mat->data; 288dfbe8321SBarry Smith PetscErrorCode ierr; 289*b24ad042SBarry Smith PetscInt i,N = m*n; 2906fa18ffdSBarry Smith MatScalar *vsingle; 29193fea6afSBarry Smith 29293fea6afSBarry Smith PetscFunctionBegin; 2936fa18ffdSBarry Smith if (N > b->setvalueslen) { 2946fa18ffdSBarry Smith if (b->setvaluescopy) {ierr = PetscFree(b->setvaluescopy);CHKERRQ(ierr);} 29582502324SSatish Balay ierr = PetscMalloc(N*sizeof(MatScalar),&b->setvaluescopy);CHKERRQ(ierr); 2966fa18ffdSBarry Smith b->setvalueslen = N; 2976fa18ffdSBarry Smith } 2986fa18ffdSBarry Smith vsingle = b->setvaluescopy; 2996fa18ffdSBarry Smith 30093fea6afSBarry Smith for (i=0; i<N; i++) { 30193fea6afSBarry Smith vsingle[i] = v[i]; 30293fea6afSBarry Smith } 30393fea6afSBarry Smith ierr = MatSetValues_MPIBAIJ_MatScalar(mat,m,im,n,in,vsingle,addv);CHKERRQ(ierr); 30493fea6afSBarry Smith PetscFunctionReturn(0); 30593fea6afSBarry Smith } 30693fea6afSBarry Smith 3074a2ae208SSatish Balay #undef __FUNCT__ 3084a2ae208SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_MPIBAIJ" 309*b24ad042SBarry Smith PetscErrorCode MatSetValuesBlocked_MPIBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv) 31093fea6afSBarry Smith { 3116fa18ffdSBarry Smith Mat_MPIBAIJ *b = (Mat_MPIBAIJ*)mat->data; 312dfbe8321SBarry Smith PetscErrorCode ierr; 313*b24ad042SBarry Smith PetscInt i,N = m*n*b->bs2; 3146fa18ffdSBarry Smith MatScalar *vsingle; 31593fea6afSBarry Smith 31693fea6afSBarry Smith PetscFunctionBegin; 3176fa18ffdSBarry Smith if (N > b->setvalueslen) { 3186fa18ffdSBarry Smith if (b->setvaluescopy) {ierr = PetscFree(b->setvaluescopy);CHKERRQ(ierr);} 31982502324SSatish Balay ierr = PetscMalloc(N*sizeof(MatScalar),&b->setvaluescopy);CHKERRQ(ierr); 3206fa18ffdSBarry Smith b->setvalueslen = N; 3216fa18ffdSBarry Smith } 3226fa18ffdSBarry Smith vsingle = b->setvaluescopy; 32393fea6afSBarry Smith for (i=0; i<N; i++) { 32493fea6afSBarry Smith vsingle[i] = v[i]; 32593fea6afSBarry Smith } 32693fea6afSBarry Smith ierr = MatSetValuesBlocked_MPIBAIJ_MatScalar(mat,m,im,n,in,vsingle,addv);CHKERRQ(ierr); 32793fea6afSBarry Smith PetscFunctionReturn(0); 32893fea6afSBarry Smith } 3296fa18ffdSBarry Smith 3304a2ae208SSatish Balay #undef __FUNCT__ 3314a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_MPIBAIJ_HT" 332*b24ad042SBarry Smith PetscErrorCode MatSetValues_MPIBAIJ_HT(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv) 3336fa18ffdSBarry Smith { 3346fa18ffdSBarry Smith Mat_MPIBAIJ *b = (Mat_MPIBAIJ*)mat->data; 335dfbe8321SBarry Smith PetscErrorCode ierr; 336*b24ad042SBarry Smith PetscInt i,N = m*n; 3376fa18ffdSBarry Smith MatScalar *vsingle; 3386fa18ffdSBarry Smith 3396fa18ffdSBarry Smith PetscFunctionBegin; 3406fa18ffdSBarry Smith if (N > b->setvalueslen) { 3416fa18ffdSBarry Smith if (b->setvaluescopy) {ierr = PetscFree(b->setvaluescopy);CHKERRQ(ierr);} 34282502324SSatish Balay ierr = PetscMalloc(N*sizeof(MatScalar),&b->setvaluescopy);CHKERRQ(ierr); 3436fa18ffdSBarry Smith b->setvalueslen = N; 3446fa18ffdSBarry Smith } 3456fa18ffdSBarry Smith vsingle = b->setvaluescopy; 3466fa18ffdSBarry Smith for (i=0; i<N; i++) { 3476fa18ffdSBarry Smith vsingle[i] = v[i]; 3486fa18ffdSBarry Smith } 3496fa18ffdSBarry Smith ierr = MatSetValues_MPIBAIJ_HT_MatScalar(mat,m,im,n,in,vsingle,addv);CHKERRQ(ierr); 3506fa18ffdSBarry Smith PetscFunctionReturn(0); 3516fa18ffdSBarry Smith } 3526fa18ffdSBarry Smith 3534a2ae208SSatish Balay #undef __FUNCT__ 3544a2ae208SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_MPIBAIJ_HT" 355*b24ad042SBarry Smith PetscErrorCode MatSetValuesBlocked_MPIBAIJ_HT(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv) 3566fa18ffdSBarry Smith { 3576fa18ffdSBarry Smith Mat_MPIBAIJ *b = (Mat_MPIBAIJ*)mat->data; 358dfbe8321SBarry Smith PetscErrorCode ierr; 359*b24ad042SBarry Smith PetscInt i,N = m*n*b->bs2; 3606fa18ffdSBarry Smith MatScalar *vsingle; 3616fa18ffdSBarry Smith 3626fa18ffdSBarry Smith PetscFunctionBegin; 3636fa18ffdSBarry Smith if (N > b->setvalueslen) { 3646fa18ffdSBarry Smith if (b->setvaluescopy) {ierr = PetscFree(b->setvaluescopy);CHKERRQ(ierr);} 36582502324SSatish Balay ierr = PetscMalloc(N*sizeof(MatScalar),&b->setvaluescopy);CHKERRQ(ierr); 3666fa18ffdSBarry Smith b->setvalueslen = N; 3676fa18ffdSBarry Smith } 3686fa18ffdSBarry Smith vsingle = b->setvaluescopy; 3696fa18ffdSBarry Smith for (i=0; i<N; i++) { 3706fa18ffdSBarry Smith vsingle[i] = v[i]; 3716fa18ffdSBarry Smith } 3726fa18ffdSBarry Smith ierr = MatSetValuesBlocked_MPIBAIJ_HT_MatScalar(mat,m,im,n,in,vsingle,addv);CHKERRQ(ierr); 3736fa18ffdSBarry Smith PetscFunctionReturn(0); 3746fa18ffdSBarry Smith } 37593fea6afSBarry Smith #endif 37693fea6afSBarry Smith 3774a2ae208SSatish Balay #undef __FUNCT__ 378e03e44c9SSatish Balay #define __FUNCT__ "MatSetValues_MPIBAIJ_MatScalar" 379*b24ad042SBarry Smith PetscErrorCode MatSetValues_MPIBAIJ_MatScalar(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const MatScalar v[],InsertMode addv) 38093fea6afSBarry Smith { 38157b952d6SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 38293fea6afSBarry Smith MatScalar value; 383273d9f13SBarry Smith PetscTruth roworiented = baij->roworiented; 384dfbe8321SBarry Smith PetscErrorCode ierr; 385*b24ad042SBarry Smith PetscInt i,j,row,col; 386*b24ad042SBarry Smith PetscInt rstart_orig=baij->rstart_bs; 387*b24ad042SBarry Smith PetscInt rend_orig=baij->rend_bs,cstart_orig=baij->cstart_bs; 388*b24ad042SBarry Smith PetscInt cend_orig=baij->cend_bs,bs=baij->bs; 38957b952d6SSatish Balay 390eada6651SSatish Balay /* Some Variables required in the macro */ 39180c1aa95SSatish Balay Mat A = baij->A; 39280c1aa95SSatish Balay Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)(A)->data; 393*b24ad042SBarry Smith PetscInt *aimax=a->imax,*ai=a->i,*ailen=a->ilen,*aj=a->j; 3943eda8832SBarry Smith MatScalar *aa=a->a; 395ac7a638eSSatish Balay 396ac7a638eSSatish Balay Mat B = baij->B; 397ac7a638eSSatish Balay Mat_SeqBAIJ *b = (Mat_SeqBAIJ*)(B)->data; 398*b24ad042SBarry Smith PetscInt *bimax=b->imax,*bi=b->i,*bilen=b->ilen,*bj=b->j; 3993eda8832SBarry Smith MatScalar *ba=b->a; 400ac7a638eSSatish Balay 401*b24ad042SBarry Smith PetscInt *rp,ii,nrow,_i,rmax,N,brow,bcol; 402*b24ad042SBarry Smith PetscInt low,high,t,ridx,cidx,bs2=a->bs2; 4033eda8832SBarry Smith MatScalar *ap,*bap; 40480c1aa95SSatish Balay 405d64ed03dSBarry Smith PetscFunctionBegin; 40657b952d6SSatish Balay for (i=0; i<m; i++) { 4075ef9f2a5SBarry Smith if (im[i] < 0) continue; 408aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g) 409590ac198SBarry Smith if (im[i] >= mat->M) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %d max %d",im[i],mat->M-1); 410639f9d9dSBarry Smith #endif 41157b952d6SSatish Balay if (im[i] >= rstart_orig && im[i] < rend_orig) { 41257b952d6SSatish Balay row = im[i] - rstart_orig; 41357b952d6SSatish Balay for (j=0; j<n; j++) { 41457b952d6SSatish Balay if (in[j] >= cstart_orig && in[j] < cend_orig){ 41557b952d6SSatish Balay col = in[j] - cstart_orig; 41657b952d6SSatish Balay if (roworiented) value = v[i*n+j]; else value = v[i+j*m]; 417f5e9677aSSatish Balay MatSetValues_SeqBAIJ_A_Private(row,col,value,addv); 41880c1aa95SSatish Balay /* ierr = MatSetValues_SeqBAIJ(baij->A,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 41973959e64SBarry Smith } else if (in[j] < 0) continue; 420aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g) 421590ac198SBarry Smith else if (in[j] >= mat->N) {SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %d max %d",in[i],mat->N-1);} 422639f9d9dSBarry Smith #endif 42357b952d6SSatish Balay else { 42457b952d6SSatish Balay if (mat->was_assembled) { 425905e6a2fSBarry Smith if (!baij->colmap) { 426905e6a2fSBarry Smith ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 427905e6a2fSBarry Smith } 428aa482453SBarry Smith #if defined (PETSC_USE_CTABLE) 4290f5bd95cSBarry Smith ierr = PetscTableFind(baij->colmap,in[j]/bs + 1,&col);CHKERRQ(ierr); 430bba1ac68SSatish Balay col = col - 1; 43148e59246SSatish Balay #else 432bba1ac68SSatish Balay col = baij->colmap[in[j]/bs] - 1; 43348e59246SSatish Balay #endif 43457b952d6SSatish Balay if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) { 43557b952d6SSatish Balay ierr = DisAssemble_MPIBAIJ(mat);CHKERRQ(ierr); 4368295de27SSatish Balay col = in[j]; 4379bf004c3SSatish Balay /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */ 4389bf004c3SSatish Balay B = baij->B; 4399bf004c3SSatish Balay b = (Mat_SeqBAIJ*)(B)->data; 4409bf004c3SSatish Balay bimax=b->imax;bi=b->i;bilen=b->ilen;bj=b->j; 4419bf004c3SSatish Balay ba=b->a; 442bba1ac68SSatish Balay } else col += in[j]%bs; 4438295de27SSatish Balay } else col = in[j]; 44457b952d6SSatish Balay if (roworiented) value = v[i*n+j]; else value = v[i+j*m]; 44590da58bdSSatish Balay MatSetValues_SeqBAIJ_B_Private(row,col,value,addv); 44690da58bdSSatish Balay /* ierr = MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 44757b952d6SSatish Balay } 44857b952d6SSatish Balay } 449d64ed03dSBarry Smith } else { 45090f02eecSBarry Smith if (!baij->donotstash) { 451ff2fd236SBarry Smith if (roworiented) { 4526fa18ffdSBarry Smith ierr = MatStashValuesRow_Private(&mat->stash,im[i],n,in,v+i*n);CHKERRQ(ierr); 453ff2fd236SBarry Smith } else { 4546fa18ffdSBarry Smith ierr = MatStashValuesCol_Private(&mat->stash,im[i],n,in,v+i,m);CHKERRQ(ierr); 45557b952d6SSatish Balay } 45657b952d6SSatish Balay } 45757b952d6SSatish Balay } 45890f02eecSBarry Smith } 4593a40ed3dSBarry Smith PetscFunctionReturn(0); 46057b952d6SSatish Balay } 46157b952d6SSatish Balay 4624a2ae208SSatish Balay #undef __FUNCT__ 4634a2ae208SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_MPIBAIJ_MatScalar" 464*b24ad042SBarry Smith PetscErrorCode MatSetValuesBlocked_MPIBAIJ_MatScalar(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const MatScalar v[],InsertMode addv) 465ab26458aSBarry Smith { 466ab26458aSBarry Smith Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 467f15d580aSBarry Smith const MatScalar *value; 468f15d580aSBarry Smith MatScalar *barray=baij->barray; 469273d9f13SBarry Smith PetscTruth roworiented = baij->roworiented; 470dfbe8321SBarry Smith PetscErrorCode ierr; 471*b24ad042SBarry Smith PetscInt i,j,ii,jj,row,col,rstart=baij->rstart; 472*b24ad042SBarry Smith PetscInt rend=baij->rend,cstart=baij->cstart,stepval; 473*b24ad042SBarry Smith PetscInt cend=baij->cend,bs=baij->bs,bs2=baij->bs2; 474ab26458aSBarry Smith 475b16ae2b1SBarry Smith PetscFunctionBegin; 47630793edcSSatish Balay if(!barray) { 47782502324SSatish Balay ierr = PetscMalloc(bs2*sizeof(MatScalar),&barray);CHKERRQ(ierr); 47882502324SSatish Balay baij->barray = barray; 47930793edcSSatish Balay } 48030793edcSSatish Balay 481ab26458aSBarry Smith if (roworiented) { 482ab26458aSBarry Smith stepval = (n-1)*bs; 483ab26458aSBarry Smith } else { 484ab26458aSBarry Smith stepval = (m-1)*bs; 485ab26458aSBarry Smith } 486ab26458aSBarry Smith for (i=0; i<m; i++) { 4875ef9f2a5SBarry Smith if (im[i] < 0) continue; 488aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g) 489590ac198SBarry Smith if (im[i] >= baij->Mbs) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large, row %d max %d",im[i],baij->Mbs-1); 490ab26458aSBarry Smith #endif 491ab26458aSBarry Smith if (im[i] >= rstart && im[i] < rend) { 492ab26458aSBarry Smith row = im[i] - rstart; 493ab26458aSBarry Smith for (j=0; j<n; j++) { 49415b57d14SSatish Balay /* If NumCol = 1 then a copy is not required */ 49515b57d14SSatish Balay if ((roworiented) && (n == 1)) { 496f15d580aSBarry Smith barray = (MatScalar*)v + i*bs2; 49715b57d14SSatish Balay } else if((!roworiented) && (m == 1)) { 498f15d580aSBarry Smith barray = (MatScalar*)v + j*bs2; 49915b57d14SSatish Balay } else { /* Here a copy is required */ 500ab26458aSBarry Smith if (roworiented) { 501ab26458aSBarry Smith value = v + i*(stepval+bs)*bs + j*bs; 502ab26458aSBarry Smith } else { 503ab26458aSBarry Smith value = v + j*(stepval+bs)*bs + i*bs; 504abef11f7SSatish Balay } 50547513183SBarry Smith for (ii=0; ii<bs; ii++,value+=stepval) { 50647513183SBarry Smith for (jj=0; jj<bs; jj++) { 50730793edcSSatish Balay *barray++ = *value++; 50847513183SBarry Smith } 50947513183SBarry Smith } 51030793edcSSatish Balay barray -=bs2; 51115b57d14SSatish Balay } 512abef11f7SSatish Balay 513abef11f7SSatish Balay if (in[j] >= cstart && in[j] < cend){ 514abef11f7SSatish Balay col = in[j] - cstart; 51593fea6afSBarry Smith ierr = MatSetValuesBlocked_SeqBAIJ_MatScalar(baij->A,1,&row,1,&col,barray,addv);CHKERRQ(ierr); 516ab26458aSBarry Smith } 5175ef9f2a5SBarry Smith else if (in[j] < 0) continue; 518aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g) 519590ac198SBarry Smith else if (in[j] >= baij->Nbs) {SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large, col %d max %d",in[j],baij->Nbs-1);} 520ab26458aSBarry Smith #endif 521ab26458aSBarry Smith else { 522ab26458aSBarry Smith if (mat->was_assembled) { 523ab26458aSBarry Smith if (!baij->colmap) { 524ab26458aSBarry Smith ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 525ab26458aSBarry Smith } 526a5eb4965SSatish Balay 527aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g) 528aa482453SBarry Smith #if defined (PETSC_USE_CTABLE) 529*b24ad042SBarry Smith { PetscInt data; 5300f5bd95cSBarry Smith ierr = PetscTableFind(baij->colmap,in[j]+1,&data);CHKERRQ(ierr); 53129bbc08cSBarry Smith if ((data - 1) % bs) SETERRQ(PETSC_ERR_PLIB,"Incorrect colmap"); 532fa46199cSSatish Balay } 53348e59246SSatish Balay #else 53429bbc08cSBarry Smith if ((baij->colmap[in[j]] - 1) % bs) SETERRQ(PETSC_ERR_PLIB,"Incorrect colmap"); 535a5eb4965SSatish Balay #endif 53648e59246SSatish Balay #endif 537aa482453SBarry Smith #if defined (PETSC_USE_CTABLE) 5380f5bd95cSBarry Smith ierr = PetscTableFind(baij->colmap,in[j]+1,&col);CHKERRQ(ierr); 539fa46199cSSatish Balay col = (col - 1)/bs; 54048e59246SSatish Balay #else 541a5eb4965SSatish Balay col = (baij->colmap[in[j]] - 1)/bs; 54248e59246SSatish Balay #endif 543ab26458aSBarry Smith if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) { 544ab26458aSBarry Smith ierr = DisAssemble_MPIBAIJ(mat);CHKERRQ(ierr); 545ab26458aSBarry Smith col = in[j]; 546ab26458aSBarry Smith } 547ab26458aSBarry Smith } 548ab26458aSBarry Smith else col = in[j]; 54993fea6afSBarry Smith ierr = MatSetValuesBlocked_SeqBAIJ_MatScalar(baij->B,1,&row,1,&col,barray,addv);CHKERRQ(ierr); 550ab26458aSBarry Smith } 551ab26458aSBarry Smith } 552d64ed03dSBarry Smith } else { 553ab26458aSBarry Smith if (!baij->donotstash) { 554ff2fd236SBarry Smith if (roworiented) { 5556fa18ffdSBarry Smith ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 556ff2fd236SBarry Smith } else { 5576fa18ffdSBarry Smith ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 558ff2fd236SBarry Smith } 559abef11f7SSatish Balay } 560ab26458aSBarry Smith } 561ab26458aSBarry Smith } 5623a40ed3dSBarry Smith PetscFunctionReturn(0); 563ab26458aSBarry Smith } 5646fa18ffdSBarry Smith 5650bdbc534SSatish Balay #define HASH_KEY 0.6180339887 566*b24ad042SBarry Smith #define HASH(size,key,tmp) (tmp = (key)*HASH_KEY,(PetscInt)((size)*(tmp-(PetscInt)tmp))) 567*b24ad042SBarry Smith /* #define HASH(size,key) ((PetscInt)((size)*fmod(((key)*HASH_KEY),1))) */ 568*b24ad042SBarry Smith /* #define HASH(size,key,tmp) ((PetscInt)((size)*fmod(((key)*HASH_KEY),1))) */ 5694a2ae208SSatish Balay #undef __FUNCT__ 5704a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_MPIBAIJ_HT_MatScalar" 571*b24ad042SBarry Smith PetscErrorCode MatSetValues_MPIBAIJ_HT_MatScalar(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const MatScalar v[],InsertMode addv) 5720bdbc534SSatish Balay { 5730bdbc534SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 574273d9f13SBarry Smith PetscTruth roworiented = baij->roworiented; 575dfbe8321SBarry Smith PetscErrorCode ierr; 576*b24ad042SBarry Smith PetscInt i,j,row,col; 577*b24ad042SBarry Smith PetscInt rstart_orig=baij->rstart_bs; 578*b24ad042SBarry Smith PetscInt rend_orig=baij->rend_bs,Nbs=baij->Nbs; 579*b24ad042SBarry Smith PetscInt h1,key,size=baij->ht_size,bs=baij->bs,*HT=baij->ht,idx; 580329f5518SBarry Smith PetscReal tmp; 5813eda8832SBarry Smith MatScalar **HD = baij->hd,value; 582aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g) 583*b24ad042SBarry Smith PetscInt total_ct=baij->ht_total_ct,insert_ct=baij->ht_insert_ct; 5844a15367fSSatish Balay #endif 5850bdbc534SSatish Balay 5860bdbc534SSatish Balay PetscFunctionBegin; 5870bdbc534SSatish Balay 5880bdbc534SSatish Balay for (i=0; i<m; i++) { 589aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g) 59029bbc08cSBarry Smith if (im[i] < 0) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Negative row"); 591590ac198SBarry Smith if (im[i] >= mat->M) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %d max %d",im[i],mat->M-1); 5920bdbc534SSatish Balay #endif 5930bdbc534SSatish Balay row = im[i]; 594c2760754SSatish Balay if (row >= rstart_orig && row < rend_orig) { 5950bdbc534SSatish Balay for (j=0; j<n; j++) { 5960bdbc534SSatish Balay col = in[j]; 5976fa18ffdSBarry Smith if (roworiented) value = v[i*n+j]; else value = v[i+j*m]; 598*b24ad042SBarry Smith /* Look up PetscInto the Hash Table */ 599c2760754SSatish Balay key = (row/bs)*Nbs+(col/bs)+1; 600c2760754SSatish Balay h1 = HASH(size,key,tmp); 6010bdbc534SSatish Balay 602c2760754SSatish Balay 603c2760754SSatish Balay idx = h1; 604aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g) 605187ce0cbSSatish Balay insert_ct++; 606187ce0cbSSatish Balay total_ct++; 607187ce0cbSSatish Balay if (HT[idx] != key) { 608187ce0cbSSatish Balay for (idx=h1; (idx<size) && (HT[idx]!=key); idx++,total_ct++); 609187ce0cbSSatish Balay if (idx == size) { 610187ce0cbSSatish Balay for (idx=0; (idx<h1) && (HT[idx]!=key); idx++,total_ct++); 611187ce0cbSSatish Balay if (idx == h1) { 612a45adfd6SMatthew Knepley SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"(%d,%d) has no entry in the hash table", row, col); 613187ce0cbSSatish Balay } 614187ce0cbSSatish Balay } 615187ce0cbSSatish Balay } 616187ce0cbSSatish Balay #else 617c2760754SSatish Balay if (HT[idx] != key) { 618c2760754SSatish Balay for (idx=h1; (idx<size) && (HT[idx]!=key); idx++); 619c2760754SSatish Balay if (idx == size) { 620c2760754SSatish Balay for (idx=0; (idx<h1) && (HT[idx]!=key); idx++); 621c2760754SSatish Balay if (idx == h1) { 622a45adfd6SMatthew Knepley SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"(%d,%d) has no entry in the hash table", row, col); 623c2760754SSatish Balay } 624c2760754SSatish Balay } 625c2760754SSatish Balay } 626187ce0cbSSatish Balay #endif 627c2760754SSatish Balay /* A HASH table entry is found, so insert the values at the correct address */ 628c2760754SSatish Balay if (addv == ADD_VALUES) *(HD[idx]+ (col % bs)*bs + (row % bs)) += value; 629c2760754SSatish Balay else *(HD[idx]+ (col % bs)*bs + (row % bs)) = value; 6300bdbc534SSatish Balay } 6310bdbc534SSatish Balay } else { 6320bdbc534SSatish Balay if (!baij->donotstash) { 633ff2fd236SBarry Smith if (roworiented) { 6348798bf22SSatish Balay ierr = MatStashValuesRow_Private(&mat->stash,im[i],n,in,v+i*n);CHKERRQ(ierr); 635ff2fd236SBarry Smith } else { 6368798bf22SSatish Balay ierr = MatStashValuesCol_Private(&mat->stash,im[i],n,in,v+i,m);CHKERRQ(ierr); 6370bdbc534SSatish Balay } 6380bdbc534SSatish Balay } 6390bdbc534SSatish Balay } 6400bdbc534SSatish Balay } 641aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g) 642187ce0cbSSatish Balay baij->ht_total_ct = total_ct; 643187ce0cbSSatish Balay baij->ht_insert_ct = insert_ct; 644187ce0cbSSatish Balay #endif 6450bdbc534SSatish Balay PetscFunctionReturn(0); 6460bdbc534SSatish Balay } 6470bdbc534SSatish Balay 6484a2ae208SSatish Balay #undef __FUNCT__ 6494a2ae208SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_MPIBAIJ_HT_MatScalar" 650*b24ad042SBarry Smith PetscErrorCode MatSetValuesBlocked_MPIBAIJ_HT_MatScalar(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const MatScalar v[],InsertMode addv) 6510bdbc534SSatish Balay { 6520bdbc534SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 653273d9f13SBarry Smith PetscTruth roworiented = baij->roworiented; 654dfbe8321SBarry Smith PetscErrorCode ierr; 655*b24ad042SBarry Smith PetscInt i,j,ii,jj,row,col; 656*b24ad042SBarry Smith PetscInt rstart=baij->rstart ; 657*b24ad042SBarry Smith PetscInt rend=baij->rend,stepval,bs=baij->bs,bs2=baij->bs2; 658*b24ad042SBarry Smith PetscInt h1,key,size=baij->ht_size,idx,*HT=baij->ht,Nbs=baij->Nbs; 659329f5518SBarry Smith PetscReal tmp; 6603eda8832SBarry Smith MatScalar **HD = baij->hd,*baij_a; 661f15d580aSBarry Smith const MatScalar *v_t,*value; 662aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g) 663*b24ad042SBarry Smith PetscInt total_ct=baij->ht_total_ct,insert_ct=baij->ht_insert_ct; 6644a15367fSSatish Balay #endif 6650bdbc534SSatish Balay 666d0a41580SSatish Balay PetscFunctionBegin; 667d0a41580SSatish Balay 6680bdbc534SSatish Balay if (roworiented) { 6690bdbc534SSatish Balay stepval = (n-1)*bs; 6700bdbc534SSatish Balay } else { 6710bdbc534SSatish Balay stepval = (m-1)*bs; 6720bdbc534SSatish Balay } 6730bdbc534SSatish Balay for (i=0; i<m; i++) { 674aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g) 675590ac198SBarry Smith if (im[i] < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %d",im[i]); 676590ac198SBarry Smith if (im[i] >= baij->Mbs) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %d max %d",im[i],baij->Mbs-1); 6770bdbc534SSatish Balay #endif 6780bdbc534SSatish Balay row = im[i]; 679187ce0cbSSatish Balay v_t = v + i*bs2; 680c2760754SSatish Balay if (row >= rstart && row < rend) { 6810bdbc534SSatish Balay for (j=0; j<n; j++) { 6820bdbc534SSatish Balay col = in[j]; 6830bdbc534SSatish Balay 6840bdbc534SSatish Balay /* Look up into the Hash Table */ 685c2760754SSatish Balay key = row*Nbs+col+1; 686c2760754SSatish Balay h1 = HASH(size,key,tmp); 6870bdbc534SSatish Balay 688c2760754SSatish Balay idx = h1; 689aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g) 690187ce0cbSSatish Balay total_ct++; 691187ce0cbSSatish Balay insert_ct++; 692187ce0cbSSatish Balay if (HT[idx] != key) { 693187ce0cbSSatish Balay for (idx=h1; (idx<size) && (HT[idx]!=key); idx++,total_ct++); 694187ce0cbSSatish Balay if (idx == size) { 695187ce0cbSSatish Balay for (idx=0; (idx<h1) && (HT[idx]!=key); idx++,total_ct++); 696187ce0cbSSatish Balay if (idx == h1) { 697a45adfd6SMatthew Knepley SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"(%d,%d) has no entry in the hash table", row, col); 698187ce0cbSSatish Balay } 699187ce0cbSSatish Balay } 700187ce0cbSSatish Balay } 701187ce0cbSSatish Balay #else 702c2760754SSatish Balay if (HT[idx] != key) { 703c2760754SSatish Balay for (idx=h1; (idx<size) && (HT[idx]!=key); idx++); 704c2760754SSatish Balay if (idx == size) { 705c2760754SSatish Balay for (idx=0; (idx<h1) && (HT[idx]!=key); idx++); 706c2760754SSatish Balay if (idx == h1) { 707a45adfd6SMatthew Knepley SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"(%d,%d) has no entry in the hash table", row, col); 708c2760754SSatish Balay } 709c2760754SSatish Balay } 710c2760754SSatish Balay } 711187ce0cbSSatish Balay #endif 712c2760754SSatish Balay baij_a = HD[idx]; 7130bdbc534SSatish Balay if (roworiented) { 714c2760754SSatish Balay /*value = v + i*(stepval+bs)*bs + j*bs;*/ 715187ce0cbSSatish Balay /* value = v + (i*(stepval+bs)+j)*bs; */ 716187ce0cbSSatish Balay value = v_t; 717187ce0cbSSatish Balay v_t += bs; 718fef45726SSatish Balay if (addv == ADD_VALUES) { 719c2760754SSatish Balay for (ii=0; ii<bs; ii++,value+=stepval) { 720c2760754SSatish Balay for (jj=ii; jj<bs2; jj+=bs) { 721fef45726SSatish Balay baij_a[jj] += *value++; 722b4cc0f5aSSatish Balay } 723b4cc0f5aSSatish Balay } 724fef45726SSatish Balay } else { 725c2760754SSatish Balay for (ii=0; ii<bs; ii++,value+=stepval) { 726c2760754SSatish Balay for (jj=ii; jj<bs2; jj+=bs) { 727fef45726SSatish Balay baij_a[jj] = *value++; 728fef45726SSatish Balay } 729fef45726SSatish Balay } 730fef45726SSatish Balay } 7310bdbc534SSatish Balay } else { 7320bdbc534SSatish Balay value = v + j*(stepval+bs)*bs + i*bs; 733fef45726SSatish Balay if (addv == ADD_VALUES) { 734b4cc0f5aSSatish Balay for (ii=0; ii<bs; ii++,value+=stepval,baij_a+=bs) { 7350bdbc534SSatish Balay for (jj=0; jj<bs; jj++) { 736fef45726SSatish Balay baij_a[jj] += *value++; 737fef45726SSatish Balay } 738fef45726SSatish Balay } 739fef45726SSatish Balay } else { 740fef45726SSatish Balay for (ii=0; ii<bs; ii++,value+=stepval,baij_a+=bs) { 741fef45726SSatish Balay for (jj=0; jj<bs; jj++) { 742fef45726SSatish Balay baij_a[jj] = *value++; 743fef45726SSatish Balay } 744b4cc0f5aSSatish Balay } 7450bdbc534SSatish Balay } 7460bdbc534SSatish Balay } 7470bdbc534SSatish Balay } 7480bdbc534SSatish Balay } else { 7490bdbc534SSatish Balay if (!baij->donotstash) { 7500bdbc534SSatish Balay if (roworiented) { 7518798bf22SSatish Balay ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 7520bdbc534SSatish Balay } else { 7538798bf22SSatish Balay ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 7540bdbc534SSatish Balay } 7550bdbc534SSatish Balay } 7560bdbc534SSatish Balay } 7570bdbc534SSatish Balay } 758aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g) 759187ce0cbSSatish Balay baij->ht_total_ct = total_ct; 760187ce0cbSSatish Balay baij->ht_insert_ct = insert_ct; 761187ce0cbSSatish Balay #endif 7620bdbc534SSatish Balay PetscFunctionReturn(0); 7630bdbc534SSatish Balay } 764133cdb44SSatish Balay 7654a2ae208SSatish Balay #undef __FUNCT__ 7664a2ae208SSatish Balay #define __FUNCT__ "MatGetValues_MPIBAIJ" 767*b24ad042SBarry Smith PetscErrorCode MatGetValues_MPIBAIJ(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[]) 768d6de1c52SSatish Balay { 769d6de1c52SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 7706849ba73SBarry Smith PetscErrorCode ierr; 771*b24ad042SBarry Smith PetscInt bs=baij->bs,i,j,bsrstart = baij->rstart*bs,bsrend = baij->rend*bs; 772*b24ad042SBarry Smith PetscInt bscstart = baij->cstart*bs,bscend = baij->cend*bs,row,col,data; 773d6de1c52SSatish Balay 774133cdb44SSatish Balay PetscFunctionBegin; 775d6de1c52SSatish Balay for (i=0; i<m; i++) { 776590ac198SBarry Smith if (idxm[i] < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %d",idxm[i]); 777590ac198SBarry Smith if (idxm[i] >= mat->M) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %d max %d",idxm[i],mat->M-1); 778d6de1c52SSatish Balay if (idxm[i] >= bsrstart && idxm[i] < bsrend) { 779d6de1c52SSatish Balay row = idxm[i] - bsrstart; 780d6de1c52SSatish Balay for (j=0; j<n; j++) { 781590ac198SBarry Smith if (idxn[j] < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Negative column: %d",idxn[j]); 782590ac198SBarry Smith if (idxn[j] >= mat->N) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %d max %d",idxn[j],mat->N-1); 783d6de1c52SSatish Balay if (idxn[j] >= bscstart && idxn[j] < bscend){ 784d6de1c52SSatish Balay col = idxn[j] - bscstart; 78598dd23e9SBarry Smith ierr = MatGetValues_SeqBAIJ(baij->A,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr); 786d64ed03dSBarry Smith } else { 787905e6a2fSBarry Smith if (!baij->colmap) { 788905e6a2fSBarry Smith ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 789905e6a2fSBarry Smith } 790aa482453SBarry Smith #if defined (PETSC_USE_CTABLE) 7910f5bd95cSBarry Smith ierr = PetscTableFind(baij->colmap,idxn[j]/bs+1,&data);CHKERRQ(ierr); 792fa46199cSSatish Balay data --; 79348e59246SSatish Balay #else 79448e59246SSatish Balay data = baij->colmap[idxn[j]/bs]-1; 79548e59246SSatish Balay #endif 79648e59246SSatish Balay if((data < 0) || (baij->garray[data/bs] != idxn[j]/bs)) *(v+i*n+j) = 0.0; 797d9d09a02SSatish Balay else { 79848e59246SSatish Balay col = data + idxn[j]%bs; 79998dd23e9SBarry Smith ierr = MatGetValues_SeqBAIJ(baij->B,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr); 800d6de1c52SSatish Balay } 801d6de1c52SSatish Balay } 802d6de1c52SSatish Balay } 803d64ed03dSBarry Smith } else { 80429bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"Only local values currently supported"); 805d6de1c52SSatish Balay } 806d6de1c52SSatish Balay } 8073a40ed3dSBarry Smith PetscFunctionReturn(0); 808d6de1c52SSatish Balay } 809d6de1c52SSatish Balay 8104a2ae208SSatish Balay #undef __FUNCT__ 8114a2ae208SSatish Balay #define __FUNCT__ "MatNorm_MPIBAIJ" 812dfbe8321SBarry Smith PetscErrorCode MatNorm_MPIBAIJ(Mat mat,NormType type,PetscReal *nrm) 813d6de1c52SSatish Balay { 814d6de1c52SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 815d6de1c52SSatish Balay Mat_SeqBAIJ *amat = (Mat_SeqBAIJ*)baij->A->data,*bmat = (Mat_SeqBAIJ*)baij->B->data; 816dfbe8321SBarry Smith PetscErrorCode ierr; 817*b24ad042SBarry Smith PetscInt i,bs2=baij->bs2; 818329f5518SBarry Smith PetscReal sum = 0.0; 8193eda8832SBarry Smith MatScalar *v; 820d6de1c52SSatish Balay 821d64ed03dSBarry Smith PetscFunctionBegin; 822d6de1c52SSatish Balay if (baij->size == 1) { 823064f8208SBarry Smith ierr = MatNorm(baij->A,type,nrm);CHKERRQ(ierr); 824d6de1c52SSatish Balay } else { 825d6de1c52SSatish Balay if (type == NORM_FROBENIUS) { 826d6de1c52SSatish Balay v = amat->a; 827d6de1c52SSatish Balay for (i=0; i<amat->nz*bs2; i++) { 828aa482453SBarry Smith #if defined(PETSC_USE_COMPLEX) 829329f5518SBarry Smith sum += PetscRealPart(PetscConj(*v)*(*v)); v++; 830d6de1c52SSatish Balay #else 831d6de1c52SSatish Balay sum += (*v)*(*v); v++; 832d6de1c52SSatish Balay #endif 833d6de1c52SSatish Balay } 834d6de1c52SSatish Balay v = bmat->a; 835d6de1c52SSatish Balay for (i=0; i<bmat->nz*bs2; i++) { 836aa482453SBarry Smith #if defined(PETSC_USE_COMPLEX) 837329f5518SBarry Smith sum += PetscRealPart(PetscConj(*v)*(*v)); v++; 838d6de1c52SSatish Balay #else 839d6de1c52SSatish Balay sum += (*v)*(*v); v++; 840d6de1c52SSatish Balay #endif 841d6de1c52SSatish Balay } 842064f8208SBarry Smith ierr = MPI_Allreduce(&sum,nrm,1,MPIU_REAL,MPI_SUM,mat->comm);CHKERRQ(ierr); 843064f8208SBarry Smith *nrm = sqrt(*nrm); 844d64ed03dSBarry Smith } else { 84529bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"No support for this norm yet"); 846d6de1c52SSatish Balay } 847d64ed03dSBarry Smith } 8483a40ed3dSBarry Smith PetscFunctionReturn(0); 849d6de1c52SSatish Balay } 85057b952d6SSatish Balay 851bd7f49f5SSatish Balay 852fef45726SSatish Balay /* 853fef45726SSatish Balay Creates the hash table, and sets the table 854fef45726SSatish Balay This table is created only once. 855fef45726SSatish Balay If new entried need to be added to the matrix 856fef45726SSatish Balay then the hash table has to be destroyed and 857fef45726SSatish Balay recreated. 858fef45726SSatish Balay */ 8594a2ae208SSatish Balay #undef __FUNCT__ 8604a2ae208SSatish Balay #define __FUNCT__ "MatCreateHashTable_MPIBAIJ_Private" 861dfbe8321SBarry Smith PetscErrorCode MatCreateHashTable_MPIBAIJ_Private(Mat mat,PetscReal factor) 862596b8d2eSBarry Smith { 863596b8d2eSBarry Smith Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 864596b8d2eSBarry Smith Mat A = baij->A,B=baij->B; 865596b8d2eSBarry Smith Mat_SeqBAIJ *a=(Mat_SeqBAIJ *)A->data,*b=(Mat_SeqBAIJ *)B->data; 866*b24ad042SBarry Smith PetscInt i,j,k,nz=a->nz+b->nz,h1,*ai=a->i,*aj=a->j,*bi=b->i,*bj=b->j; 8676849ba73SBarry Smith PetscErrorCode ierr; 868*b24ad042SBarry Smith PetscInt size,bs2=baij->bs2,rstart=baij->rstart; 869*b24ad042SBarry Smith PetscInt cstart=baij->cstart,*garray=baij->garray,row,col,Nbs=baij->Nbs; 870*b24ad042SBarry Smith PetscInt *HT,key; 8713eda8832SBarry Smith MatScalar **HD; 872329f5518SBarry Smith PetscReal tmp; 873aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g) 874*b24ad042SBarry Smith PetscInt ct=0,max=0; 8754a15367fSSatish Balay #endif 876fef45726SSatish Balay 877d64ed03dSBarry Smith PetscFunctionBegin; 878*b24ad042SBarry Smith baij->ht_size=(PetscInt)(factor*nz); 8790bdbc534SSatish Balay size = baij->ht_size; 880fef45726SSatish Balay 8810bdbc534SSatish Balay if (baij->ht) { 8820bdbc534SSatish Balay PetscFunctionReturn(0); 883596b8d2eSBarry Smith } 8840bdbc534SSatish Balay 885fef45726SSatish Balay /* Allocate Memory for Hash Table */ 886*b24ad042SBarry Smith ierr = PetscMalloc((size)*(sizeof(PetscInt)+sizeof(MatScalar*))+1,&baij->hd);CHKERRQ(ierr); 887*b24ad042SBarry Smith baij->ht = (PetscInt*)(baij->hd + size); 888b9e4cc15SSatish Balay HD = baij->hd; 889a07cd24cSSatish Balay HT = baij->ht; 890b9e4cc15SSatish Balay 891b9e4cc15SSatish Balay 892*b24ad042SBarry Smith ierr = PetscMemzero(HD,size*(sizeof(PetscInt)+sizeof(PetscScalar*)));CHKERRQ(ierr); 8930bdbc534SSatish Balay 894596b8d2eSBarry Smith 895596b8d2eSBarry Smith /* Loop Over A */ 8960bdbc534SSatish Balay for (i=0; i<a->mbs; i++) { 897596b8d2eSBarry Smith for (j=ai[i]; j<ai[i+1]; j++) { 8980bdbc534SSatish Balay row = i+rstart; 8990bdbc534SSatish Balay col = aj[j]+cstart; 900596b8d2eSBarry Smith 901187ce0cbSSatish Balay key = row*Nbs + col + 1; 902c2760754SSatish Balay h1 = HASH(size,key,tmp); 9030bdbc534SSatish Balay for (k=0; k<size; k++){ 904958c9bccSBarry Smith if (!HT[(h1+k)%size]) { 9050bdbc534SSatish Balay HT[(h1+k)%size] = key; 9060bdbc534SSatish Balay HD[(h1+k)%size] = a->a + j*bs2; 907596b8d2eSBarry Smith break; 908aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g) 909187ce0cbSSatish Balay } else { 910187ce0cbSSatish Balay ct++; 911187ce0cbSSatish Balay #endif 912596b8d2eSBarry Smith } 913187ce0cbSSatish Balay } 914aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g) 915187ce0cbSSatish Balay if (k> max) max = k; 916187ce0cbSSatish Balay #endif 917596b8d2eSBarry Smith } 918596b8d2eSBarry Smith } 919596b8d2eSBarry Smith /* Loop Over B */ 9200bdbc534SSatish Balay for (i=0; i<b->mbs; i++) { 921596b8d2eSBarry Smith for (j=bi[i]; j<bi[i+1]; j++) { 9220bdbc534SSatish Balay row = i+rstart; 9230bdbc534SSatish Balay col = garray[bj[j]]; 924187ce0cbSSatish Balay key = row*Nbs + col + 1; 925c2760754SSatish Balay h1 = HASH(size,key,tmp); 9260bdbc534SSatish Balay for (k=0; k<size; k++){ 927958c9bccSBarry Smith if (!HT[(h1+k)%size]) { 9280bdbc534SSatish Balay HT[(h1+k)%size] = key; 9290bdbc534SSatish Balay HD[(h1+k)%size] = b->a + j*bs2; 930596b8d2eSBarry Smith break; 931aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g) 932187ce0cbSSatish Balay } else { 933187ce0cbSSatish Balay ct++; 934187ce0cbSSatish Balay #endif 935596b8d2eSBarry Smith } 936187ce0cbSSatish Balay } 937aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g) 938187ce0cbSSatish Balay if (k> max) max = k; 939187ce0cbSSatish Balay #endif 940596b8d2eSBarry Smith } 941596b8d2eSBarry Smith } 942596b8d2eSBarry Smith 943596b8d2eSBarry Smith /* Print Summary */ 944aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g) 945c38d4ed2SBarry Smith for (i=0,j=0; i<size; i++) { 946596b8d2eSBarry Smith if (HT[i]) {j++;} 947c38d4ed2SBarry Smith } 948958c9bccSBarry Smith PetscLogInfo(0,"MatCreateHashTable_MPIBAIJ_Private: Average Search = %5.2f,max search = %d\n",(!j)? 0.0:((PetscReal)(ct+j))/j,max); 949187ce0cbSSatish Balay #endif 9503a40ed3dSBarry Smith PetscFunctionReturn(0); 951596b8d2eSBarry Smith } 95257b952d6SSatish Balay 9534a2ae208SSatish Balay #undef __FUNCT__ 9544a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyBegin_MPIBAIJ" 955dfbe8321SBarry Smith PetscErrorCode MatAssemblyBegin_MPIBAIJ(Mat mat,MatAssemblyType mode) 956bbb85fb3SSatish Balay { 957bbb85fb3SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 958dfbe8321SBarry Smith PetscErrorCode ierr; 959*b24ad042SBarry Smith PetscInt nstash,reallocs; 960bbb85fb3SSatish Balay InsertMode addv; 961bbb85fb3SSatish Balay 962bbb85fb3SSatish Balay PetscFunctionBegin; 963bbb85fb3SSatish Balay if (baij->donotstash) { 964bbb85fb3SSatish Balay PetscFunctionReturn(0); 965bbb85fb3SSatish Balay } 966bbb85fb3SSatish Balay 967bbb85fb3SSatish Balay /* make sure all processors are either in INSERTMODE or ADDMODE */ 968bbb85fb3SSatish Balay ierr = MPI_Allreduce(&mat->insertmode,&addv,1,MPI_INT,MPI_BOR,mat->comm);CHKERRQ(ierr); 969bbb85fb3SSatish Balay if (addv == (ADD_VALUES|INSERT_VALUES)) { 97029bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Some processors inserted others added"); 971bbb85fb3SSatish Balay } 972bbb85fb3SSatish Balay mat->insertmode = addv; /* in case this processor had no cache */ 973bbb85fb3SSatish Balay 9748798bf22SSatish Balay ierr = MatStashScatterBegin_Private(&mat->stash,baij->rowners_bs);CHKERRQ(ierr); 9758798bf22SSatish Balay ierr = MatStashScatterBegin_Private(&mat->bstash,baij->rowners);CHKERRQ(ierr); 9768798bf22SSatish Balay ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr); 977b0a32e0cSBarry Smith PetscLogInfo(0,"MatAssemblyBegin_MPIBAIJ:Stash has %d entries,uses %d mallocs.\n",nstash,reallocs); 97846680499SSatish Balay ierr = MatStashGetInfo_Private(&mat->bstash,&nstash,&reallocs);CHKERRQ(ierr); 979b0a32e0cSBarry Smith PetscLogInfo(0,"MatAssemblyBegin_MPIBAIJ:Block-Stash has %d entries, uses %d mallocs.\n",nstash,reallocs); 980bbb85fb3SSatish Balay PetscFunctionReturn(0); 981bbb85fb3SSatish Balay } 982bbb85fb3SSatish Balay 9834a2ae208SSatish Balay #undef __FUNCT__ 9844a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyEnd_MPIBAIJ" 985dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_MPIBAIJ(Mat mat,MatAssemblyType mode) 986bbb85fb3SSatish Balay { 987bbb85fb3SSatish Balay Mat_MPIBAIJ *baij=(Mat_MPIBAIJ*)mat->data; 988a2d1c673SSatish Balay Mat_SeqBAIJ *a=(Mat_SeqBAIJ*)baij->A->data,*b=(Mat_SeqBAIJ*)baij->B->data; 9896849ba73SBarry Smith PetscErrorCode ierr; 990*b24ad042SBarry Smith PetscInt i,j,rstart,ncols,flg,bs2=baij->bs2; 991*b24ad042SBarry Smith PetscInt *row,*col,other_disassembled; 9927c922b88SBarry Smith PetscTruth r1,r2,r3; 9933eda8832SBarry Smith MatScalar *val; 994bbb85fb3SSatish Balay InsertMode addv = mat->insertmode; 995*b24ad042SBarry Smith PetscMPIInt n; 996bbb85fb3SSatish Balay 997bbb85fb3SSatish Balay PetscFunctionBegin; 998bbb85fb3SSatish Balay if (!baij->donotstash) { 999a2d1c673SSatish Balay while (1) { 10008798bf22SSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 1001a2d1c673SSatish Balay if (!flg) break; 1002a2d1c673SSatish Balay 1003bbb85fb3SSatish Balay for (i=0; i<n;) { 1004bbb85fb3SSatish Balay /* Now identify the consecutive vals belonging to the same row */ 1005bbb85fb3SSatish Balay for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; } 1006bbb85fb3SSatish Balay if (j < n) ncols = j-i; 1007bbb85fb3SSatish Balay else ncols = n-i; 1008bbb85fb3SSatish Balay /* Now assemble all these values with a single function call */ 100993fea6afSBarry Smith ierr = MatSetValues_MPIBAIJ_MatScalar(mat,1,row+i,ncols,col+i,val+i,addv);CHKERRQ(ierr); 1010bbb85fb3SSatish Balay i = j; 1011bbb85fb3SSatish Balay } 1012bbb85fb3SSatish Balay } 10138798bf22SSatish Balay ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr); 1014a2d1c673SSatish Balay /* Now process the block-stash. Since the values are stashed column-oriented, 1015a2d1c673SSatish Balay set the roworiented flag to column oriented, and after MatSetValues() 1016a2d1c673SSatish Balay restore the original flags */ 1017a2d1c673SSatish Balay r1 = baij->roworiented; 1018a2d1c673SSatish Balay r2 = a->roworiented; 1019a2d1c673SSatish Balay r3 = b->roworiented; 10207c922b88SBarry Smith baij->roworiented = PETSC_FALSE; 10217c922b88SBarry Smith a->roworiented = PETSC_FALSE; 10227c922b88SBarry Smith b->roworiented = PETSC_FALSE; 1023a2d1c673SSatish Balay while (1) { 10248798bf22SSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->bstash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 1025a2d1c673SSatish Balay if (!flg) break; 1026a2d1c673SSatish Balay 1027a2d1c673SSatish Balay for (i=0; i<n;) { 1028a2d1c673SSatish Balay /* Now identify the consecutive vals belonging to the same row */ 1029a2d1c673SSatish Balay for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; } 1030a2d1c673SSatish Balay if (j < n) ncols = j-i; 1031a2d1c673SSatish Balay else ncols = n-i; 103293fea6afSBarry Smith ierr = MatSetValuesBlocked_MPIBAIJ_MatScalar(mat,1,row+i,ncols,col+i,val+i*bs2,addv);CHKERRQ(ierr); 1033a2d1c673SSatish Balay i = j; 1034a2d1c673SSatish Balay } 1035a2d1c673SSatish Balay } 10368798bf22SSatish Balay ierr = MatStashScatterEnd_Private(&mat->bstash);CHKERRQ(ierr); 1037a2d1c673SSatish Balay baij->roworiented = r1; 1038a2d1c673SSatish Balay a->roworiented = r2; 1039a2d1c673SSatish Balay b->roworiented = r3; 1040bbb85fb3SSatish Balay } 1041bbb85fb3SSatish Balay 1042bbb85fb3SSatish Balay ierr = MatAssemblyBegin(baij->A,mode);CHKERRQ(ierr); 1043bbb85fb3SSatish Balay ierr = MatAssemblyEnd(baij->A,mode);CHKERRQ(ierr); 1044bbb85fb3SSatish Balay 1045bbb85fb3SSatish Balay /* determine if any processor has disassembled, if so we must 1046bbb85fb3SSatish Balay also disassemble ourselfs, in order that we may reassemble. */ 1047bbb85fb3SSatish Balay /* 1048bbb85fb3SSatish Balay if nonzero structure of submatrix B cannot change then we know that 1049bbb85fb3SSatish Balay no processor disassembled thus we can skip this stuff 1050bbb85fb3SSatish Balay */ 1051bbb85fb3SSatish Balay if (!((Mat_SeqBAIJ*)baij->B->data)->nonew) { 1052bbb85fb3SSatish Balay ierr = MPI_Allreduce(&mat->was_assembled,&other_disassembled,1,MPI_INT,MPI_PROD,mat->comm);CHKERRQ(ierr); 1053bbb85fb3SSatish Balay if (mat->was_assembled && !other_disassembled) { 1054bbb85fb3SSatish Balay ierr = DisAssemble_MPIBAIJ(mat);CHKERRQ(ierr); 1055bbb85fb3SSatish Balay } 1056bbb85fb3SSatish Balay } 1057bbb85fb3SSatish Balay 1058bbb85fb3SSatish Balay if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) { 1059bbb85fb3SSatish Balay ierr = MatSetUpMultiply_MPIBAIJ(mat);CHKERRQ(ierr); 1060bbb85fb3SSatish Balay } 1061bbb85fb3SSatish Balay ierr = MatAssemblyBegin(baij->B,mode);CHKERRQ(ierr); 1062bbb85fb3SSatish Balay ierr = MatAssemblyEnd(baij->B,mode);CHKERRQ(ierr); 1063bbb85fb3SSatish Balay 1064aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g) 1065bbb85fb3SSatish Balay if (baij->ht && mode== MAT_FINAL_ASSEMBLY) { 1066f6275e2eSBarry Smith PetscLogInfo(0,"MatAssemblyEnd_MPIBAIJ:Average Hash Table Search in MatSetValues = %5.2f\n",((PetscReal)baij->ht_total_ct)/baij->ht_insert_ct); 1067bbb85fb3SSatish Balay baij->ht_total_ct = 0; 1068bbb85fb3SSatish Balay baij->ht_insert_ct = 0; 1069bbb85fb3SSatish Balay } 1070bbb85fb3SSatish Balay #endif 1071bbb85fb3SSatish Balay if (baij->ht_flag && !baij->ht && mode == MAT_FINAL_ASSEMBLY) { 1072bbb85fb3SSatish Balay ierr = MatCreateHashTable_MPIBAIJ_Private(mat,baij->ht_fact);CHKERRQ(ierr); 1073bbb85fb3SSatish Balay mat->ops->setvalues = MatSetValues_MPIBAIJ_HT; 1074bbb85fb3SSatish Balay mat->ops->setvaluesblocked = MatSetValuesBlocked_MPIBAIJ_HT; 1075bbb85fb3SSatish Balay } 1076bbb85fb3SSatish Balay 1077606d414cSSatish Balay if (baij->rowvalues) { 1078606d414cSSatish Balay ierr = PetscFree(baij->rowvalues);CHKERRQ(ierr); 1079606d414cSSatish Balay baij->rowvalues = 0; 1080606d414cSSatish Balay } 1081bbb85fb3SSatish Balay PetscFunctionReturn(0); 1082bbb85fb3SSatish Balay } 108357b952d6SSatish Balay 10844a2ae208SSatish Balay #undef __FUNCT__ 10854a2ae208SSatish Balay #define __FUNCT__ "MatView_MPIBAIJ_ASCIIorDraworSocket" 10866849ba73SBarry Smith static PetscErrorCode MatView_MPIBAIJ_ASCIIorDraworSocket(Mat mat,PetscViewer viewer) 108757b952d6SSatish Balay { 108857b952d6SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 1089dfbe8321SBarry Smith PetscErrorCode ierr; 1090*b24ad042SBarry Smith PetscMPIInt size = baij->size,rank = baij->rank; 1091*b24ad042SBarry Smith PetscInt bs = baij->bs; 109232077d6dSBarry Smith PetscTruth iascii,isdraw; 1093b0a32e0cSBarry Smith PetscViewer sviewer; 1094f3ef73ceSBarry Smith PetscViewerFormat format; 109557b952d6SSatish Balay 1096d64ed03dSBarry Smith PetscFunctionBegin; 1097f81bd7ccSHong Zhang /* printf(" MatView_MPIBAIJ_ASCIIorDraworSocket is called ...\n"); */ 109832077d6dSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&iascii);CHKERRQ(ierr); 1099fb9695e5SSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr); 110032077d6dSBarry Smith if (iascii) { 1101b0a32e0cSBarry Smith ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr); 1102456192e2SBarry Smith if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 11034e220ebcSLois Curfman McInnes MatInfo info; 1104d132466eSBarry Smith ierr = MPI_Comm_rank(mat->comm,&rank);CHKERRQ(ierr); 1105d41123aaSBarry Smith ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr); 1106b0a32e0cSBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Local rows %d nz %d nz alloced %d bs %d mem %d\n", 1107273d9f13SBarry Smith rank,mat->m,(int)info.nz_used*bs,(int)info.nz_allocated*bs, 11086831982aSBarry Smith baij->bs,(int)info.memory);CHKERRQ(ierr); 1109d132466eSBarry Smith ierr = MatGetInfo(baij->A,MAT_LOCAL,&info);CHKERRQ(ierr); 1110b0a32e0cSBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] on-diagonal part: nz %d \n",rank,(int)info.nz_used*bs);CHKERRQ(ierr); 1111d132466eSBarry Smith ierr = MatGetInfo(baij->B,MAT_LOCAL,&info);CHKERRQ(ierr); 1112b0a32e0cSBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] off-diagonal part: nz %d \n",rank,(int)info.nz_used*bs);CHKERRQ(ierr); 1113b0a32e0cSBarry Smith ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 111457b952d6SSatish Balay ierr = VecScatterView(baij->Mvctx,viewer);CHKERRQ(ierr); 11153a40ed3dSBarry Smith PetscFunctionReturn(0); 1116fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_INFO) { 1117b0a32e0cSBarry Smith ierr = PetscViewerASCIIPrintf(viewer," block size is %d\n",bs);CHKERRQ(ierr); 11183a40ed3dSBarry Smith PetscFunctionReturn(0); 111904929863SHong Zhang } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) { 112004929863SHong Zhang PetscFunctionReturn(0); 112157b952d6SSatish Balay } 112257b952d6SSatish Balay } 112357b952d6SSatish Balay 11240f5bd95cSBarry Smith if (isdraw) { 1125b0a32e0cSBarry Smith PetscDraw draw; 112657b952d6SSatish Balay PetscTruth isnull; 1127b0a32e0cSBarry Smith ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr); 1128b0a32e0cSBarry Smith ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); if (isnull) PetscFunctionReturn(0); 112957b952d6SSatish Balay } 113057b952d6SSatish Balay 113157b952d6SSatish Balay if (size == 1) { 1132873048abSBarry Smith ierr = PetscObjectSetName((PetscObject)baij->A,mat->name);CHKERRQ(ierr); 113357b952d6SSatish Balay ierr = MatView(baij->A,viewer);CHKERRQ(ierr); 1134d64ed03dSBarry Smith } else { 113557b952d6SSatish Balay /* assemble the entire matrix onto first processor. */ 113657b952d6SSatish Balay Mat A; 113757b952d6SSatish Balay Mat_SeqBAIJ *Aloc; 1138*b24ad042SBarry Smith PetscInt M = mat->M,N = mat->N,*ai,*aj,col,i,j,k,*rvals,mbs = baij->mbs; 11393eda8832SBarry Smith MatScalar *a; 114057b952d6SSatish Balay 1141f204ca49SKris Buschelman /* Here we are creating a temporary matrix, so will assume MPIBAIJ is acceptable */ 1142f204ca49SKris Buschelman /* Perhaps this should be the type of mat? */ 114357b952d6SSatish Balay if (!rank) { 1144f204ca49SKris Buschelman ierr = MatCreate(mat->comm,M,N,M,N,&A);CHKERRQ(ierr); 1145d64ed03dSBarry Smith } else { 1146f204ca49SKris Buschelman ierr = MatCreate(mat->comm,0,0,M,N,&A);CHKERRQ(ierr); 114757b952d6SSatish Balay } 1148f204ca49SKris Buschelman ierr = MatSetType(A,MATMPIBAIJ);CHKERRQ(ierr); 1149f204ca49SKris Buschelman ierr = MatMPIBAIJSetPreallocation(A,baij->bs,0,PETSC_NULL,0,PETSC_NULL);CHKERRQ(ierr); 1150b0a32e0cSBarry Smith PetscLogObjectParent(mat,A); 115157b952d6SSatish Balay 115257b952d6SSatish Balay /* copy over the A part */ 115357b952d6SSatish Balay Aloc = (Mat_SeqBAIJ*)baij->A->data; 115457b952d6SSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 1155*b24ad042SBarry Smith ierr = PetscMalloc(bs*sizeof(PetscInt),&rvals);CHKERRQ(ierr); 115657b952d6SSatish Balay 115757b952d6SSatish Balay for (i=0; i<mbs; i++) { 115857b952d6SSatish Balay rvals[0] = bs*(baij->rstart + i); 115957b952d6SSatish Balay for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; } 116057b952d6SSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 116157b952d6SSatish Balay col = (baij->cstart+aj[j])*bs; 116257b952d6SSatish Balay for (k=0; k<bs; k++) { 116393fea6afSBarry Smith ierr = MatSetValues_MPIBAIJ_MatScalar(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 1164cee3aa6bSSatish Balay col++; a += bs; 116557b952d6SSatish Balay } 116657b952d6SSatish Balay } 116757b952d6SSatish Balay } 116857b952d6SSatish Balay /* copy over the B part */ 116957b952d6SSatish Balay Aloc = (Mat_SeqBAIJ*)baij->B->data; 117057b952d6SSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 117157b952d6SSatish Balay for (i=0; i<mbs; i++) { 117257b952d6SSatish Balay rvals[0] = bs*(baij->rstart + i); 117357b952d6SSatish Balay for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; } 117457b952d6SSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 117557b952d6SSatish Balay col = baij->garray[aj[j]]*bs; 117657b952d6SSatish Balay for (k=0; k<bs; k++) { 117793fea6afSBarry Smith ierr = MatSetValues_MPIBAIJ_MatScalar(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 1178cee3aa6bSSatish Balay col++; a += bs; 117957b952d6SSatish Balay } 118057b952d6SSatish Balay } 118157b952d6SSatish Balay } 1182606d414cSSatish Balay ierr = PetscFree(rvals);CHKERRQ(ierr); 11836d4a8577SBarry Smith ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 11846d4a8577SBarry Smith ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 118555843e3eSBarry Smith /* 118655843e3eSBarry Smith Everyone has to call to draw the matrix since the graphics waits are 1187b0a32e0cSBarry Smith synchronized across all processors that share the PetscDraw object 118855843e3eSBarry Smith */ 1189b0a32e0cSBarry Smith ierr = PetscViewerGetSingleton(viewer,&sviewer);CHKERRQ(ierr); 1190f14a1c24SBarry Smith if (!rank) { 1191e36acaf3SBarry Smith ierr = PetscObjectSetName((PetscObject)((Mat_MPIBAIJ*)(A->data))->A,mat->name);CHKERRQ(ierr); 11926831982aSBarry Smith ierr = MatView(((Mat_MPIBAIJ*)(A->data))->A,sviewer);CHKERRQ(ierr); 119357b952d6SSatish Balay } 1194b0a32e0cSBarry Smith ierr = PetscViewerRestoreSingleton(viewer,&sviewer);CHKERRQ(ierr); 119557b952d6SSatish Balay ierr = MatDestroy(A);CHKERRQ(ierr); 119657b952d6SSatish Balay } 11973a40ed3dSBarry Smith PetscFunctionReturn(0); 119857b952d6SSatish Balay } 119957b952d6SSatish Balay 12004a2ae208SSatish Balay #undef __FUNCT__ 12014a2ae208SSatish Balay #define __FUNCT__ "MatView_MPIBAIJ" 1202dfbe8321SBarry Smith PetscErrorCode MatView_MPIBAIJ(Mat mat,PetscViewer viewer) 120357b952d6SSatish Balay { 1204dfbe8321SBarry Smith PetscErrorCode ierr; 120532077d6dSBarry Smith PetscTruth iascii,isdraw,issocket,isbinary; 120657b952d6SSatish Balay 1207d64ed03dSBarry Smith PetscFunctionBegin; 120832077d6dSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&iascii);CHKERRQ(ierr); 1209fb9695e5SSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr); 1210b0a32e0cSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_SOCKET,&issocket);CHKERRQ(ierr); 1211fb9695e5SSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_BINARY,&isbinary);CHKERRQ(ierr); 121232077d6dSBarry Smith if (iascii || isdraw || issocket || isbinary) { 12137b2a1423SBarry Smith ierr = MatView_MPIBAIJ_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr); 12145cd90555SBarry Smith } else { 121579a5c55eSBarry Smith SETERRQ1(PETSC_ERR_SUP,"Viewer type %s not supported by MPIBAIJ matrices",((PetscObject)viewer)->type_name); 121657b952d6SSatish Balay } 12173a40ed3dSBarry Smith PetscFunctionReturn(0); 121857b952d6SSatish Balay } 121957b952d6SSatish Balay 12204a2ae208SSatish Balay #undef __FUNCT__ 12214a2ae208SSatish Balay #define __FUNCT__ "MatDestroy_MPIBAIJ" 1222dfbe8321SBarry Smith PetscErrorCode MatDestroy_MPIBAIJ(Mat mat) 122379bdfe76SSatish Balay { 122479bdfe76SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 1225dfbe8321SBarry Smith PetscErrorCode ierr; 122679bdfe76SSatish Balay 1227d64ed03dSBarry Smith PetscFunctionBegin; 1228aa482453SBarry Smith #if defined(PETSC_USE_LOG) 1229b0a32e0cSBarry Smith PetscLogObjectState((PetscObject)mat,"Rows=%d,Cols=%d",mat->M,mat->N); 123079bdfe76SSatish Balay #endif 12318798bf22SSatish Balay ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr); 12328798bf22SSatish Balay ierr = MatStashDestroy_Private(&mat->bstash);CHKERRQ(ierr); 1233606d414cSSatish Balay ierr = PetscFree(baij->rowners);CHKERRQ(ierr); 123479bdfe76SSatish Balay ierr = MatDestroy(baij->A);CHKERRQ(ierr); 123579bdfe76SSatish Balay ierr = MatDestroy(baij->B);CHKERRQ(ierr); 1236aa482453SBarry Smith #if defined (PETSC_USE_CTABLE) 12370f5bd95cSBarry Smith if (baij->colmap) {ierr = PetscTableDelete(baij->colmap);CHKERRQ(ierr);} 123848e59246SSatish Balay #else 1239606d414cSSatish Balay if (baij->colmap) {ierr = PetscFree(baij->colmap);CHKERRQ(ierr);} 124048e59246SSatish Balay #endif 1241606d414cSSatish Balay if (baij->garray) {ierr = PetscFree(baij->garray);CHKERRQ(ierr);} 1242606d414cSSatish Balay if (baij->lvec) {ierr = VecDestroy(baij->lvec);CHKERRQ(ierr);} 1243606d414cSSatish Balay if (baij->Mvctx) {ierr = VecScatterDestroy(baij->Mvctx);CHKERRQ(ierr);} 1244606d414cSSatish Balay if (baij->rowvalues) {ierr = PetscFree(baij->rowvalues);CHKERRQ(ierr);} 1245606d414cSSatish Balay if (baij->barray) {ierr = PetscFree(baij->barray);CHKERRQ(ierr);} 1246606d414cSSatish Balay if (baij->hd) {ierr = PetscFree(baij->hd);CHKERRQ(ierr);} 12476fa18ffdSBarry Smith #if defined(PETSC_USE_MAT_SINGLE) 12486fa18ffdSBarry Smith if (baij->setvaluescopy) {ierr = PetscFree(baij->setvaluescopy);CHKERRQ(ierr);} 12496fa18ffdSBarry Smith #endif 1250606d414cSSatish Balay ierr = PetscFree(baij);CHKERRQ(ierr); 1251901853e0SKris Buschelman 1252901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatStoreValues_C","",PETSC_NULL);CHKERRQ(ierr); 1253901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatRetrieveValues_C","",PETSC_NULL);CHKERRQ(ierr); 1254901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatGetDiagonalBlock_C","",PETSC_NULL);CHKERRQ(ierr); 1255901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPIBAIJSetPreallocation_C","",PETSC_NULL);CHKERRQ(ierr); 1256901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDiagonalScaleLocal_C","",PETSC_NULL);CHKERRQ(ierr); 1257901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatSetHashTableFactor_C","",PETSC_NULL);CHKERRQ(ierr); 12583a40ed3dSBarry Smith PetscFunctionReturn(0); 125979bdfe76SSatish Balay } 126079bdfe76SSatish Balay 12614a2ae208SSatish Balay #undef __FUNCT__ 12624a2ae208SSatish Balay #define __FUNCT__ "MatMult_MPIBAIJ" 1263dfbe8321SBarry Smith PetscErrorCode MatMult_MPIBAIJ(Mat A,Vec xx,Vec yy) 1264cee3aa6bSSatish Balay { 1265cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1266dfbe8321SBarry Smith PetscErrorCode ierr; 1267*b24ad042SBarry Smith PetscInt nt; 1268cee3aa6bSSatish Balay 1269d64ed03dSBarry Smith PetscFunctionBegin; 1270e1311b90SBarry Smith ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr); 1271273d9f13SBarry Smith if (nt != A->n) { 127229bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx"); 127347b4a8eaSLois Curfman McInnes } 1274e1311b90SBarry Smith ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr); 1275273d9f13SBarry Smith if (nt != A->m) { 127629bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible parition of A and yy"); 127747b4a8eaSLois Curfman McInnes } 127843a90d84SBarry Smith ierr = VecScatterBegin(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr); 1279f830108cSBarry Smith ierr = (*a->A->ops->mult)(a->A,xx,yy);CHKERRQ(ierr); 128043a90d84SBarry Smith ierr = VecScatterEnd(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr); 1281f830108cSBarry Smith ierr = (*a->B->ops->multadd)(a->B,a->lvec,yy,yy);CHKERRQ(ierr); 128243a90d84SBarry Smith ierr = VecScatterPostRecvs(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr); 12833a40ed3dSBarry Smith PetscFunctionReturn(0); 1284cee3aa6bSSatish Balay } 1285cee3aa6bSSatish Balay 12864a2ae208SSatish Balay #undef __FUNCT__ 12874a2ae208SSatish Balay #define __FUNCT__ "MatMultAdd_MPIBAIJ" 1288dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPIBAIJ(Mat A,Vec xx,Vec yy,Vec zz) 1289cee3aa6bSSatish Balay { 1290cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1291dfbe8321SBarry Smith PetscErrorCode ierr; 1292d64ed03dSBarry Smith 1293d64ed03dSBarry Smith PetscFunctionBegin; 129443a90d84SBarry Smith ierr = VecScatterBegin(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr); 1295f830108cSBarry Smith ierr = (*a->A->ops->multadd)(a->A,xx,yy,zz);CHKERRQ(ierr); 129643a90d84SBarry Smith ierr = VecScatterEnd(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr); 1297f830108cSBarry Smith ierr = (*a->B->ops->multadd)(a->B,a->lvec,zz,zz);CHKERRQ(ierr); 12983a40ed3dSBarry Smith PetscFunctionReturn(0); 1299cee3aa6bSSatish Balay } 1300cee3aa6bSSatish Balay 13014a2ae208SSatish Balay #undef __FUNCT__ 13024a2ae208SSatish Balay #define __FUNCT__ "MatMultTranspose_MPIBAIJ" 1303dfbe8321SBarry Smith PetscErrorCode MatMultTranspose_MPIBAIJ(Mat A,Vec xx,Vec yy) 1304cee3aa6bSSatish Balay { 1305cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1306dfbe8321SBarry Smith PetscErrorCode ierr; 1307cee3aa6bSSatish Balay 1308d64ed03dSBarry Smith PetscFunctionBegin; 1309cee3aa6bSSatish Balay /* do nondiagonal part */ 13107c922b88SBarry Smith ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr); 1311cee3aa6bSSatish Balay /* send it on its way */ 1312537820f0SBarry Smith ierr = VecScatterBegin(a->lvec,yy,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr); 1313cee3aa6bSSatish Balay /* do local part */ 13147c922b88SBarry Smith ierr = (*a->A->ops->multtranspose)(a->A,xx,yy);CHKERRQ(ierr); 1315cee3aa6bSSatish Balay /* receive remote parts: note this assumes the values are not actually */ 1316cee3aa6bSSatish Balay /* inserted in yy until the next line, which is true for my implementation*/ 1317cee3aa6bSSatish Balay /* but is not perhaps always true. */ 1318639f9d9dSBarry Smith ierr = VecScatterEnd(a->lvec,yy,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr); 13193a40ed3dSBarry Smith PetscFunctionReturn(0); 1320cee3aa6bSSatish Balay } 1321cee3aa6bSSatish Balay 13224a2ae208SSatish Balay #undef __FUNCT__ 13234a2ae208SSatish Balay #define __FUNCT__ "MatMultTransposeAdd_MPIBAIJ" 1324dfbe8321SBarry Smith PetscErrorCode MatMultTransposeAdd_MPIBAIJ(Mat A,Vec xx,Vec yy,Vec zz) 1325cee3aa6bSSatish Balay { 1326cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1327dfbe8321SBarry Smith PetscErrorCode ierr; 1328cee3aa6bSSatish Balay 1329d64ed03dSBarry Smith PetscFunctionBegin; 1330cee3aa6bSSatish Balay /* do nondiagonal part */ 13317c922b88SBarry Smith ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr); 1332cee3aa6bSSatish Balay /* send it on its way */ 1333537820f0SBarry Smith ierr = VecScatterBegin(a->lvec,zz,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr); 1334cee3aa6bSSatish Balay /* do local part */ 13357c922b88SBarry Smith ierr = (*a->A->ops->multtransposeadd)(a->A,xx,yy,zz);CHKERRQ(ierr); 1336cee3aa6bSSatish Balay /* receive remote parts: note this assumes the values are not actually */ 1337cee3aa6bSSatish Balay /* inserted in yy until the next line, which is true for my implementation*/ 1338cee3aa6bSSatish Balay /* but is not perhaps always true. */ 1339537820f0SBarry Smith ierr = VecScatterEnd(a->lvec,zz,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr); 13403a40ed3dSBarry Smith PetscFunctionReturn(0); 1341cee3aa6bSSatish Balay } 1342cee3aa6bSSatish Balay 1343cee3aa6bSSatish Balay /* 1344cee3aa6bSSatish Balay This only works correctly for square matrices where the subblock A->A is the 1345cee3aa6bSSatish Balay diagonal block 1346cee3aa6bSSatish Balay */ 13474a2ae208SSatish Balay #undef __FUNCT__ 13484a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonal_MPIBAIJ" 1349dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_MPIBAIJ(Mat A,Vec v) 1350cee3aa6bSSatish Balay { 1351cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1352dfbe8321SBarry Smith PetscErrorCode ierr; 1353d64ed03dSBarry Smith 1354d64ed03dSBarry Smith PetscFunctionBegin; 1355273d9f13SBarry Smith if (A->M != A->N) SETERRQ(PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block"); 13563a40ed3dSBarry Smith ierr = MatGetDiagonal(a->A,v);CHKERRQ(ierr); 13573a40ed3dSBarry Smith PetscFunctionReturn(0); 1358cee3aa6bSSatish Balay } 1359cee3aa6bSSatish Balay 13604a2ae208SSatish Balay #undef __FUNCT__ 13614a2ae208SSatish Balay #define __FUNCT__ "MatScale_MPIBAIJ" 1362dfbe8321SBarry Smith PetscErrorCode MatScale_MPIBAIJ(const PetscScalar *aa,Mat A) 1363cee3aa6bSSatish Balay { 1364cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1365dfbe8321SBarry Smith PetscErrorCode ierr; 1366d64ed03dSBarry Smith 1367d64ed03dSBarry Smith PetscFunctionBegin; 1368cee3aa6bSSatish Balay ierr = MatScale(aa,a->A);CHKERRQ(ierr); 1369cee3aa6bSSatish Balay ierr = MatScale(aa,a->B);CHKERRQ(ierr); 13703a40ed3dSBarry Smith PetscFunctionReturn(0); 1371cee3aa6bSSatish Balay } 1372026e39d0SSatish Balay 13734a2ae208SSatish Balay #undef __FUNCT__ 13744a2ae208SSatish Balay #define __FUNCT__ "MatGetRow_MPIBAIJ" 1375*b24ad042SBarry Smith PetscErrorCode MatGetRow_MPIBAIJ(Mat matin,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 1376acdf5bf4SSatish Balay { 1377acdf5bf4SSatish Balay Mat_MPIBAIJ *mat = (Mat_MPIBAIJ*)matin->data; 137887828ca2SBarry Smith PetscScalar *vworkA,*vworkB,**pvA,**pvB,*v_p; 13796849ba73SBarry Smith PetscErrorCode ierr; 1380*b24ad042SBarry Smith PetscInt bs = mat->bs,bs2 = mat->bs2,i,*cworkA,*cworkB,**pcA,**pcB; 1381*b24ad042SBarry Smith PetscInt nztot,nzA,nzB,lrow,brstart = mat->rstart*bs,brend = mat->rend*bs; 1382*b24ad042SBarry Smith PetscInt *cmap,*idx_p,cstart = mat->cstart; 1383acdf5bf4SSatish Balay 1384d64ed03dSBarry Smith PetscFunctionBegin; 138529bbc08cSBarry Smith if (mat->getrowactive == PETSC_TRUE) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Already active"); 1386acdf5bf4SSatish Balay mat->getrowactive = PETSC_TRUE; 1387acdf5bf4SSatish Balay 1388acdf5bf4SSatish Balay if (!mat->rowvalues && (idx || v)) { 1389acdf5bf4SSatish Balay /* 1390acdf5bf4SSatish Balay allocate enough space to hold information from the longest row. 1391acdf5bf4SSatish Balay */ 1392acdf5bf4SSatish Balay Mat_SeqBAIJ *Aa = (Mat_SeqBAIJ*)mat->A->data,*Ba = (Mat_SeqBAIJ*)mat->B->data; 1393*b24ad042SBarry Smith PetscInt max = 1,mbs = mat->mbs,tmp; 1394bd16c2feSSatish Balay for (i=0; i<mbs; i++) { 1395acdf5bf4SSatish Balay tmp = Aa->i[i+1] - Aa->i[i] + Ba->i[i+1] - Ba->i[i]; 1396acdf5bf4SSatish Balay if (max < tmp) { max = tmp; } 1397acdf5bf4SSatish Balay } 1398*b24ad042SBarry Smith ierr = PetscMalloc(max*bs2*(sizeof(PetscInt)+sizeof(PetscScalar)),&mat->rowvalues);CHKERRQ(ierr); 1399*b24ad042SBarry Smith mat->rowindices = (PetscInt*)(mat->rowvalues + max*bs2); 1400acdf5bf4SSatish Balay } 1401acdf5bf4SSatish Balay 140229bbc08cSBarry Smith if (row < brstart || row >= brend) SETERRQ(PETSC_ERR_SUP,"Only local rows") 1403d9d09a02SSatish Balay lrow = row - brstart; 1404acdf5bf4SSatish Balay 1405acdf5bf4SSatish Balay pvA = &vworkA; pcA = &cworkA; pvB = &vworkB; pcB = &cworkB; 1406acdf5bf4SSatish Balay if (!v) {pvA = 0; pvB = 0;} 1407acdf5bf4SSatish Balay if (!idx) {pcA = 0; if (!v) pcB = 0;} 1408f830108cSBarry Smith ierr = (*mat->A->ops->getrow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr); 1409f830108cSBarry Smith ierr = (*mat->B->ops->getrow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr); 1410acdf5bf4SSatish Balay nztot = nzA + nzB; 1411acdf5bf4SSatish Balay 1412acdf5bf4SSatish Balay cmap = mat->garray; 1413acdf5bf4SSatish Balay if (v || idx) { 1414acdf5bf4SSatish Balay if (nztot) { 1415acdf5bf4SSatish Balay /* Sort by increasing column numbers, assuming A and B already sorted */ 1416*b24ad042SBarry Smith PetscInt imark = -1; 1417acdf5bf4SSatish Balay if (v) { 1418acdf5bf4SSatish Balay *v = v_p = mat->rowvalues; 1419acdf5bf4SSatish Balay for (i=0; i<nzB; i++) { 1420d9d09a02SSatish Balay if (cmap[cworkB[i]/bs] < cstart) v_p[i] = vworkB[i]; 1421acdf5bf4SSatish Balay else break; 1422acdf5bf4SSatish Balay } 1423acdf5bf4SSatish Balay imark = i; 1424acdf5bf4SSatish Balay for (i=0; i<nzA; i++) v_p[imark+i] = vworkA[i]; 1425acdf5bf4SSatish Balay for (i=imark; i<nzB; i++) v_p[nzA+i] = vworkB[i]; 1426acdf5bf4SSatish Balay } 1427acdf5bf4SSatish Balay if (idx) { 1428acdf5bf4SSatish Balay *idx = idx_p = mat->rowindices; 1429acdf5bf4SSatish Balay if (imark > -1) { 1430acdf5bf4SSatish Balay for (i=0; i<imark; i++) { 1431bd16c2feSSatish Balay idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs; 1432acdf5bf4SSatish Balay } 1433acdf5bf4SSatish Balay } else { 1434acdf5bf4SSatish Balay for (i=0; i<nzB; i++) { 1435d9d09a02SSatish Balay if (cmap[cworkB[i]/bs] < cstart) 1436d9d09a02SSatish Balay idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ; 1437acdf5bf4SSatish Balay else break; 1438acdf5bf4SSatish Balay } 1439acdf5bf4SSatish Balay imark = i; 1440acdf5bf4SSatish Balay } 1441d9d09a02SSatish Balay for (i=0; i<nzA; i++) idx_p[imark+i] = cstart*bs + cworkA[i]; 1442d9d09a02SSatish Balay for (i=imark; i<nzB; i++) idx_p[nzA+i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ; 1443acdf5bf4SSatish Balay } 1444d64ed03dSBarry Smith } else { 1445d212a18eSSatish Balay if (idx) *idx = 0; 1446d212a18eSSatish Balay if (v) *v = 0; 1447d212a18eSSatish Balay } 1448acdf5bf4SSatish Balay } 1449acdf5bf4SSatish Balay *nz = nztot; 1450f830108cSBarry Smith ierr = (*mat->A->ops->restorerow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr); 1451f830108cSBarry Smith ierr = (*mat->B->ops->restorerow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr); 14523a40ed3dSBarry Smith PetscFunctionReturn(0); 1453acdf5bf4SSatish Balay } 1454acdf5bf4SSatish Balay 14554a2ae208SSatish Balay #undef __FUNCT__ 14564a2ae208SSatish Balay #define __FUNCT__ "MatRestoreRow_MPIBAIJ" 1457*b24ad042SBarry Smith PetscErrorCode MatRestoreRow_MPIBAIJ(Mat mat,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 1458acdf5bf4SSatish Balay { 1459acdf5bf4SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 1460d64ed03dSBarry Smith 1461d64ed03dSBarry Smith PetscFunctionBegin; 1462acdf5bf4SSatish Balay if (baij->getrowactive == PETSC_FALSE) { 146329bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"MatGetRow not called"); 1464acdf5bf4SSatish Balay } 1465acdf5bf4SSatish Balay baij->getrowactive = PETSC_FALSE; 14663a40ed3dSBarry Smith PetscFunctionReturn(0); 1467acdf5bf4SSatish Balay } 1468acdf5bf4SSatish Balay 14694a2ae208SSatish Balay #undef __FUNCT__ 14704a2ae208SSatish Balay #define __FUNCT__ "MatGetBlockSize_MPIBAIJ" 1471*b24ad042SBarry Smith PetscErrorCode MatGetBlockSize_MPIBAIJ(Mat mat,PetscInt *bs) 14725a838052SSatish Balay { 14735a838052SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 1474d64ed03dSBarry Smith 1475d64ed03dSBarry Smith PetscFunctionBegin; 14765a838052SSatish Balay *bs = baij->bs; 14773a40ed3dSBarry Smith PetscFunctionReturn(0); 14785a838052SSatish Balay } 14795a838052SSatish Balay 14804a2ae208SSatish Balay #undef __FUNCT__ 14814a2ae208SSatish Balay #define __FUNCT__ "MatZeroEntries_MPIBAIJ" 1482dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_MPIBAIJ(Mat A) 148358667388SSatish Balay { 148458667388SSatish Balay Mat_MPIBAIJ *l = (Mat_MPIBAIJ*)A->data; 1485dfbe8321SBarry Smith PetscErrorCode ierr; 1486d64ed03dSBarry Smith 1487d64ed03dSBarry Smith PetscFunctionBegin; 148858667388SSatish Balay ierr = MatZeroEntries(l->A);CHKERRQ(ierr); 148958667388SSatish Balay ierr = MatZeroEntries(l->B);CHKERRQ(ierr); 14903a40ed3dSBarry Smith PetscFunctionReturn(0); 149158667388SSatish Balay } 14920ac07820SSatish Balay 14934a2ae208SSatish Balay #undef __FUNCT__ 14944a2ae208SSatish Balay #define __FUNCT__ "MatGetInfo_MPIBAIJ" 1495dfbe8321SBarry Smith PetscErrorCode MatGetInfo_MPIBAIJ(Mat matin,MatInfoType flag,MatInfo *info) 14960ac07820SSatish Balay { 14974e220ebcSLois Curfman McInnes Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)matin->data; 14984e220ebcSLois Curfman McInnes Mat A = a->A,B = a->B; 1499dfbe8321SBarry Smith PetscErrorCode ierr; 1500329f5518SBarry Smith PetscReal isend[5],irecv[5]; 15010ac07820SSatish Balay 1502d64ed03dSBarry Smith PetscFunctionBegin; 1503f6275e2eSBarry Smith info->block_size = (PetscReal)a->bs; 15044e220ebcSLois Curfman McInnes ierr = MatGetInfo(A,MAT_LOCAL,info);CHKERRQ(ierr); 15050e4b21beSBarry Smith isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded; 1506de87f314SBarry Smith isend[3] = info->memory; isend[4] = info->mallocs; 15074e220ebcSLois Curfman McInnes ierr = MatGetInfo(B,MAT_LOCAL,info);CHKERRQ(ierr); 15080e4b21beSBarry Smith isend[0] += info->nz_used; isend[1] += info->nz_allocated; isend[2] += info->nz_unneeded; 1509de87f314SBarry Smith isend[3] += info->memory; isend[4] += info->mallocs; 15100ac07820SSatish Balay if (flag == MAT_LOCAL) { 15114e220ebcSLois Curfman McInnes info->nz_used = isend[0]; 15124e220ebcSLois Curfman McInnes info->nz_allocated = isend[1]; 15134e220ebcSLois Curfman McInnes info->nz_unneeded = isend[2]; 15144e220ebcSLois Curfman McInnes info->memory = isend[3]; 15154e220ebcSLois Curfman McInnes info->mallocs = isend[4]; 15160ac07820SSatish Balay } else if (flag == MAT_GLOBAL_MAX) { 1517d7d1e502SBarry Smith ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_MAX,matin->comm);CHKERRQ(ierr); 15184e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 15194e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 15204e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 15214e220ebcSLois Curfman McInnes info->memory = irecv[3]; 15224e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 15230ac07820SSatish Balay } else if (flag == MAT_GLOBAL_SUM) { 1524d7d1e502SBarry Smith ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_SUM,matin->comm);CHKERRQ(ierr); 15254e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 15264e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 15274e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 15284e220ebcSLois Curfman McInnes info->memory = irecv[3]; 15294e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 1530d41123aaSBarry Smith } else { 153179a5c55eSBarry Smith SETERRQ1(PETSC_ERR_ARG_WRONG,"Unknown MatInfoType argument %d",flag); 15320ac07820SSatish Balay } 1533f6275e2eSBarry Smith info->rows_global = (PetscReal)A->M; 1534f6275e2eSBarry Smith info->columns_global = (PetscReal)A->N; 1535f6275e2eSBarry Smith info->rows_local = (PetscReal)A->m; 1536f6275e2eSBarry Smith info->columns_local = (PetscReal)A->N; 15374e220ebcSLois Curfman McInnes info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */ 15384e220ebcSLois Curfman McInnes info->fill_ratio_needed = 0; 15394e220ebcSLois Curfman McInnes info->factor_mallocs = 0; 15403a40ed3dSBarry Smith PetscFunctionReturn(0); 15410ac07820SSatish Balay } 15420ac07820SSatish Balay 15434a2ae208SSatish Balay #undef __FUNCT__ 15444a2ae208SSatish Balay #define __FUNCT__ "MatSetOption_MPIBAIJ" 1545dfbe8321SBarry Smith PetscErrorCode MatSetOption_MPIBAIJ(Mat A,MatOption op) 154658667388SSatish Balay { 154758667388SSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1548dfbe8321SBarry Smith PetscErrorCode ierr; 154958667388SSatish Balay 1550d64ed03dSBarry Smith PetscFunctionBegin; 155112c028f9SKris Buschelman switch (op) { 155212c028f9SKris Buschelman case MAT_NO_NEW_NONZERO_LOCATIONS: 155312c028f9SKris Buschelman case MAT_YES_NEW_NONZERO_LOCATIONS: 155412c028f9SKris Buschelman case MAT_COLUMNS_UNSORTED: 155512c028f9SKris Buschelman case MAT_COLUMNS_SORTED: 155612c028f9SKris Buschelman case MAT_NEW_NONZERO_ALLOCATION_ERR: 155712c028f9SKris Buschelman case MAT_KEEP_ZEROED_ROWS: 155812c028f9SKris Buschelman case MAT_NEW_NONZERO_LOCATION_ERR: 155998305bb5SBarry Smith ierr = MatSetOption(a->A,op);CHKERRQ(ierr); 156098305bb5SBarry Smith ierr = MatSetOption(a->B,op);CHKERRQ(ierr); 156112c028f9SKris Buschelman break; 156212c028f9SKris Buschelman case MAT_ROW_ORIENTED: 15637c922b88SBarry Smith a->roworiented = PETSC_TRUE; 156498305bb5SBarry Smith ierr = MatSetOption(a->A,op);CHKERRQ(ierr); 156598305bb5SBarry Smith ierr = MatSetOption(a->B,op);CHKERRQ(ierr); 156612c028f9SKris Buschelman break; 156712c028f9SKris Buschelman case MAT_ROWS_SORTED: 156812c028f9SKris Buschelman case MAT_ROWS_UNSORTED: 156912c028f9SKris Buschelman case MAT_YES_NEW_DIAGONALS: 1570b0a32e0cSBarry Smith PetscLogInfo(A,"Info:MatSetOption_MPIBAIJ:Option ignored\n"); 157112c028f9SKris Buschelman break; 157212c028f9SKris Buschelman case MAT_COLUMN_ORIENTED: 15737c922b88SBarry Smith a->roworiented = PETSC_FALSE; 157498305bb5SBarry Smith ierr = MatSetOption(a->A,op);CHKERRQ(ierr); 157598305bb5SBarry Smith ierr = MatSetOption(a->B,op);CHKERRQ(ierr); 157612c028f9SKris Buschelman break; 157712c028f9SKris Buschelman case MAT_IGNORE_OFF_PROC_ENTRIES: 15787c922b88SBarry Smith a->donotstash = PETSC_TRUE; 157912c028f9SKris Buschelman break; 158012c028f9SKris Buschelman case MAT_NO_NEW_DIAGONALS: 158129bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"MAT_NO_NEW_DIAGONALS"); 158212c028f9SKris Buschelman case MAT_USE_HASH_TABLE: 15837c922b88SBarry Smith a->ht_flag = PETSC_TRUE; 158412c028f9SKris Buschelman break; 158577e54ba9SKris Buschelman case MAT_SYMMETRIC: 158677e54ba9SKris Buschelman case MAT_STRUCTURALLY_SYMMETRIC: 15872188ac68SBarry Smith case MAT_HERMITIAN: 15882188ac68SBarry Smith case MAT_SYMMETRY_ETERNAL: 15892188ac68SBarry Smith ierr = MatSetOption(a->A,op);CHKERRQ(ierr); 15902188ac68SBarry Smith break; 15919a4540c5SBarry Smith case MAT_NOT_SYMMETRIC: 15929a4540c5SBarry Smith case MAT_NOT_STRUCTURALLY_SYMMETRIC: 15939a4540c5SBarry Smith case MAT_NOT_HERMITIAN: 15949a4540c5SBarry Smith case MAT_NOT_SYMMETRY_ETERNAL: 159577e54ba9SKris Buschelman break; 159612c028f9SKris Buschelman default: 159729bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"unknown option"); 1598d64ed03dSBarry Smith } 15993a40ed3dSBarry Smith PetscFunctionReturn(0); 160058667388SSatish Balay } 160158667388SSatish Balay 16024a2ae208SSatish Balay #undef __FUNCT__ 16034a2ae208SSatish Balay #define __FUNCT__ "MatTranspose_MPIBAIJ(" 1604dfbe8321SBarry Smith PetscErrorCode MatTranspose_MPIBAIJ(Mat A,Mat *matout) 16050ac07820SSatish Balay { 16060ac07820SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)A->data; 16070ac07820SSatish Balay Mat_SeqBAIJ *Aloc; 16080ac07820SSatish Balay Mat B; 1609dfbe8321SBarry Smith PetscErrorCode ierr; 1610*b24ad042SBarry Smith PetscInt M=A->M,N=A->N,*ai,*aj,i,*rvals,j,k,col; 1611*b24ad042SBarry Smith PetscInt bs=baij->bs,mbs=baij->mbs; 16123eda8832SBarry Smith MatScalar *a; 16130ac07820SSatish Balay 1614d64ed03dSBarry Smith PetscFunctionBegin; 161529bbc08cSBarry Smith if (!matout && M != N) SETERRQ(PETSC_ERR_ARG_SIZ,"Square matrix only for in-place"); 1616f204ca49SKris Buschelman ierr = MatCreate(A->comm,A->n,A->m,N,M,&B);CHKERRQ(ierr); 1617f204ca49SKris Buschelman ierr = MatSetType(B,A->type_name);CHKERRQ(ierr); 1618f204ca49SKris Buschelman ierr = MatMPIBAIJSetPreallocation(B,baij->bs,0,PETSC_NULL,0,PETSC_NULL);CHKERRQ(ierr); 16190ac07820SSatish Balay 16200ac07820SSatish Balay /* copy over the A part */ 16210ac07820SSatish Balay Aloc = (Mat_SeqBAIJ*)baij->A->data; 16220ac07820SSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 1623*b24ad042SBarry Smith ierr = PetscMalloc(bs*sizeof(PetscInt),&rvals);CHKERRQ(ierr); 16240ac07820SSatish Balay 16250ac07820SSatish Balay for (i=0; i<mbs; i++) { 16260ac07820SSatish Balay rvals[0] = bs*(baij->rstart + i); 16270ac07820SSatish Balay for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; } 16280ac07820SSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 16290ac07820SSatish Balay col = (baij->cstart+aj[j])*bs; 16300ac07820SSatish Balay for (k=0; k<bs; k++) { 163193fea6afSBarry Smith ierr = MatSetValues_MPIBAIJ_MatScalar(B,1,&col,bs,rvals,a,INSERT_VALUES);CHKERRQ(ierr); 16320ac07820SSatish Balay col++; a += bs; 16330ac07820SSatish Balay } 16340ac07820SSatish Balay } 16350ac07820SSatish Balay } 16360ac07820SSatish Balay /* copy over the B part */ 16370ac07820SSatish Balay Aloc = (Mat_SeqBAIJ*)baij->B->data; 16380ac07820SSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 16390ac07820SSatish Balay for (i=0; i<mbs; i++) { 16400ac07820SSatish Balay rvals[0] = bs*(baij->rstart + i); 16410ac07820SSatish Balay for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; } 16420ac07820SSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 16430ac07820SSatish Balay col = baij->garray[aj[j]]*bs; 16440ac07820SSatish Balay for (k=0; k<bs; k++) { 164593fea6afSBarry Smith ierr = MatSetValues_MPIBAIJ_MatScalar(B,1,&col,bs,rvals,a,INSERT_VALUES);CHKERRQ(ierr); 16460ac07820SSatish Balay col++; a += bs; 16470ac07820SSatish Balay } 16480ac07820SSatish Balay } 16490ac07820SSatish Balay } 1650606d414cSSatish Balay ierr = PetscFree(rvals);CHKERRQ(ierr); 16510ac07820SSatish Balay ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 16520ac07820SSatish Balay ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 16530ac07820SSatish Balay 16547c922b88SBarry Smith if (matout) { 16550ac07820SSatish Balay *matout = B; 16560ac07820SSatish Balay } else { 1657273d9f13SBarry Smith ierr = MatHeaderCopy(A,B);CHKERRQ(ierr); 16580ac07820SSatish Balay } 16593a40ed3dSBarry Smith PetscFunctionReturn(0); 16600ac07820SSatish Balay } 16610e95ebc0SSatish Balay 16624a2ae208SSatish Balay #undef __FUNCT__ 16634a2ae208SSatish Balay #define __FUNCT__ "MatDiagonalScale_MPIBAIJ" 1664dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_MPIBAIJ(Mat mat,Vec ll,Vec rr) 16650e95ebc0SSatish Balay { 166636c4a09eSSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 166736c4a09eSSatish Balay Mat a = baij->A,b = baij->B; 1668dfbe8321SBarry Smith PetscErrorCode ierr; 1669*b24ad042SBarry Smith PetscInt s1,s2,s3; 16700e95ebc0SSatish Balay 1671d64ed03dSBarry Smith PetscFunctionBegin; 167236c4a09eSSatish Balay ierr = MatGetLocalSize(mat,&s2,&s3);CHKERRQ(ierr); 167336c4a09eSSatish Balay if (rr) { 167436c4a09eSSatish Balay ierr = VecGetLocalSize(rr,&s1);CHKERRQ(ierr); 167529bbc08cSBarry Smith if (s1!=s3) SETERRQ(PETSC_ERR_ARG_SIZ,"right vector non-conforming local size"); 167636c4a09eSSatish Balay /* Overlap communication with computation. */ 167736c4a09eSSatish Balay ierr = VecScatterBegin(rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD,baij->Mvctx);CHKERRQ(ierr); 167836c4a09eSSatish Balay } 16790e95ebc0SSatish Balay if (ll) { 16800e95ebc0SSatish Balay ierr = VecGetLocalSize(ll,&s1);CHKERRQ(ierr); 168129bbc08cSBarry Smith if (s1!=s2) SETERRQ(PETSC_ERR_ARG_SIZ,"left vector non-conforming local size"); 1682a21fb8cbSBarry Smith ierr = (*b->ops->diagonalscale)(b,ll,PETSC_NULL);CHKERRQ(ierr); 16830e95ebc0SSatish Balay } 168436c4a09eSSatish Balay /* scale the diagonal block */ 168536c4a09eSSatish Balay ierr = (*a->ops->diagonalscale)(a,ll,rr);CHKERRQ(ierr); 168636c4a09eSSatish Balay 168736c4a09eSSatish Balay if (rr) { 168836c4a09eSSatish Balay /* Do a scatter end and then right scale the off-diagonal block */ 168936c4a09eSSatish Balay ierr = VecScatterEnd(rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD,baij->Mvctx);CHKERRQ(ierr); 1690a21fb8cbSBarry Smith ierr = (*b->ops->diagonalscale)(b,PETSC_NULL,baij->lvec);CHKERRQ(ierr); 169136c4a09eSSatish Balay } 169236c4a09eSSatish Balay 16933a40ed3dSBarry Smith PetscFunctionReturn(0); 16940e95ebc0SSatish Balay } 16950e95ebc0SSatish Balay 16964a2ae208SSatish Balay #undef __FUNCT__ 16974a2ae208SSatish Balay #define __FUNCT__ "MatZeroRows_MPIBAIJ" 1698dfbe8321SBarry Smith PetscErrorCode MatZeroRows_MPIBAIJ(Mat A,IS is,const PetscScalar *diag) 16990ac07820SSatish Balay { 17000ac07820SSatish Balay Mat_MPIBAIJ *l = (Mat_MPIBAIJ*)A->data; 17016849ba73SBarry Smith PetscErrorCode ierr; 1702*b24ad042SBarry Smith PetscMPIInt imdex,size = l->size,n,rank = l->rank; 1703*b24ad042SBarry Smith PetscInt i,N,*rows,*owners = l->rowners; 1704*b24ad042SBarry Smith PetscInt *nprocs,j,idx,nsends,row; 1705*b24ad042SBarry Smith PetscInt nmax,*svalues,*starts,*owner,nrecvs; 1706*b24ad042SBarry Smith PetscInt *rvalues,tag = A->tag,count,base,slen,*source; 1707*b24ad042SBarry Smith PetscInt *lens,*lrows,*values,bs=l->bs,rstart_bs=l->rstart_bs; 17080ac07820SSatish Balay MPI_Comm comm = A->comm; 17090ac07820SSatish Balay MPI_Request *send_waits,*recv_waits; 17100ac07820SSatish Balay MPI_Status recv_status,*send_status; 17110ac07820SSatish Balay IS istmp; 171235d8aa7fSBarry Smith PetscTruth found; 17130ac07820SSatish Balay 1714d64ed03dSBarry Smith PetscFunctionBegin; 1715f14a1c24SBarry Smith ierr = ISGetLocalSize(is,&N);CHKERRQ(ierr); 17160ac07820SSatish Balay ierr = ISGetIndices(is,&rows);CHKERRQ(ierr); 17170ac07820SSatish Balay 17180ac07820SSatish Balay /* first count number of contributors to each processor */ 1719*b24ad042SBarry Smith ierr = PetscMalloc(2*size*sizeof(PetscInt),&nprocs);CHKERRQ(ierr); 1720*b24ad042SBarry Smith ierr = PetscMemzero(nprocs,2*size*sizeof(PetscInt));CHKERRQ(ierr); 1721*b24ad042SBarry Smith ierr = PetscMalloc((N+1)*sizeof(PetscInt),&owner);CHKERRQ(ierr); /* see note*/ 17220ac07820SSatish Balay for (i=0; i<N; i++) { 17230ac07820SSatish Balay idx = rows[i]; 172435d8aa7fSBarry Smith found = PETSC_FALSE; 17250ac07820SSatish Balay for (j=0; j<size; j++) { 17260ac07820SSatish Balay if (idx >= owners[j]*bs && idx < owners[j+1]*bs) { 1727c1dc657dSBarry Smith nprocs[2*j]++; nprocs[2*j+1] = 1; owner[i] = j; found = PETSC_TRUE; break; 17280ac07820SSatish Balay } 17290ac07820SSatish Balay } 173029bbc08cSBarry Smith if (!found) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Index out of range"); 17310ac07820SSatish Balay } 1732c1dc657dSBarry Smith nsends = 0; for (i=0; i<size; i++) { nsends += nprocs[2*i+1];} 17330ac07820SSatish Balay 17340ac07820SSatish Balay /* inform other processors of number of messages and max length*/ 1735c1dc657dSBarry Smith ierr = PetscMaxSum(comm,nprocs,&nmax,&nrecvs);CHKERRQ(ierr); 17360ac07820SSatish Balay 17370ac07820SSatish Balay /* post receives: */ 1738*b24ad042SBarry Smith ierr = PetscMalloc((nrecvs+1)*(nmax+1)*sizeof(PetscInt),&rvalues);CHKERRQ(ierr); 1739b0a32e0cSBarry Smith ierr = PetscMalloc((nrecvs+1)*sizeof(MPI_Request),&recv_waits);CHKERRQ(ierr); 17400ac07820SSatish Balay for (i=0; i<nrecvs; i++) { 1741*b24ad042SBarry Smith ierr = MPI_Irecv(rvalues+nmax*i,nmax,MPIU_INT,MPI_ANY_SOURCE,tag,comm,recv_waits+i);CHKERRQ(ierr); 17420ac07820SSatish Balay } 17430ac07820SSatish Balay 17440ac07820SSatish Balay /* do sends: 17450ac07820SSatish Balay 1) starts[i] gives the starting index in svalues for stuff going to 17460ac07820SSatish Balay the ith processor 17470ac07820SSatish Balay */ 1748*b24ad042SBarry Smith ierr = PetscMalloc((N+1)*sizeof(PetscInt),&svalues);CHKERRQ(ierr); 1749b0a32e0cSBarry Smith ierr = PetscMalloc((nsends+1)*sizeof(MPI_Request),&send_waits);CHKERRQ(ierr); 1750*b24ad042SBarry Smith ierr = PetscMalloc((size+1)*sizeof(PetscInt),&starts);CHKERRQ(ierr); 17510ac07820SSatish Balay starts[0] = 0; 1752c1dc657dSBarry Smith for (i=1; i<size; i++) { starts[i] = starts[i-1] + nprocs[2*i-2];} 17530ac07820SSatish Balay for (i=0; i<N; i++) { 17540ac07820SSatish Balay svalues[starts[owner[i]]++] = rows[i]; 17550ac07820SSatish Balay } 17566831982aSBarry Smith ierr = ISRestoreIndices(is,&rows);CHKERRQ(ierr); 17570ac07820SSatish Balay 17580ac07820SSatish Balay starts[0] = 0; 1759c1dc657dSBarry Smith for (i=1; i<size+1; i++) { starts[i] = starts[i-1] + nprocs[2*i-2];} 17600ac07820SSatish Balay count = 0; 17610ac07820SSatish Balay for (i=0; i<size; i++) { 1762c1dc657dSBarry Smith if (nprocs[2*i+1]) { 1763*b24ad042SBarry Smith ierr = MPI_Isend(svalues+starts[i],nprocs[2*i],MPIU_INT,i,tag,comm,send_waits+count++);CHKERRQ(ierr); 17640ac07820SSatish Balay } 17650ac07820SSatish Balay } 1766606d414cSSatish Balay ierr = PetscFree(starts);CHKERRQ(ierr); 17670ac07820SSatish Balay 17680ac07820SSatish Balay base = owners[rank]*bs; 17690ac07820SSatish Balay 17700ac07820SSatish Balay /* wait on receives */ 1771*b24ad042SBarry Smith ierr = PetscMalloc(2*(nrecvs+1)*sizeof(PetscInt),&lens);CHKERRQ(ierr); 17720ac07820SSatish Balay source = lens + nrecvs; 17730ac07820SSatish Balay count = nrecvs; slen = 0; 17740ac07820SSatish Balay while (count) { 1775ca161407SBarry Smith ierr = MPI_Waitany(nrecvs,recv_waits,&imdex,&recv_status);CHKERRQ(ierr); 17760ac07820SSatish Balay /* unpack receives into our local space */ 1777*b24ad042SBarry Smith ierr = MPI_Get_count(&recv_status,MPIU_INT,&n);CHKERRQ(ierr); 17780ac07820SSatish Balay source[imdex] = recv_status.MPI_SOURCE; 17790ac07820SSatish Balay lens[imdex] = n; 17800ac07820SSatish Balay slen += n; 17810ac07820SSatish Balay count--; 17820ac07820SSatish Balay } 1783606d414cSSatish Balay ierr = PetscFree(recv_waits);CHKERRQ(ierr); 17840ac07820SSatish Balay 17850ac07820SSatish Balay /* move the data into the send scatter */ 1786*b24ad042SBarry Smith ierr = PetscMalloc((slen+1)*sizeof(PetscInt),&lrows);CHKERRQ(ierr); 17870ac07820SSatish Balay count = 0; 17880ac07820SSatish Balay for (i=0; i<nrecvs; i++) { 17890ac07820SSatish Balay values = rvalues + i*nmax; 17900ac07820SSatish Balay for (j=0; j<lens[i]; j++) { 17910ac07820SSatish Balay lrows[count++] = values[j] - base; 17920ac07820SSatish Balay } 17930ac07820SSatish Balay } 1794606d414cSSatish Balay ierr = PetscFree(rvalues);CHKERRQ(ierr); 1795606d414cSSatish Balay ierr = PetscFree(lens);CHKERRQ(ierr); 1796606d414cSSatish Balay ierr = PetscFree(owner);CHKERRQ(ierr); 1797606d414cSSatish Balay ierr = PetscFree(nprocs);CHKERRQ(ierr); 17980ac07820SSatish Balay 17990ac07820SSatish Balay /* actually zap the local rows */ 1800029af93fSBarry Smith ierr = ISCreateGeneral(PETSC_COMM_SELF,slen,lrows,&istmp);CHKERRQ(ierr); 1801b0a32e0cSBarry Smith PetscLogObjectParent(A,istmp); 1802a07cd24cSSatish Balay 180372dacd9aSBarry Smith /* 180472dacd9aSBarry Smith Zero the required rows. If the "diagonal block" of the matrix 180572dacd9aSBarry Smith is square and the user wishes to set the diagonal we use seperate 180672dacd9aSBarry Smith code so that MatSetValues() is not called for each diagonal allocating 180772dacd9aSBarry Smith new memory, thus calling lots of mallocs and slowing things down. 180872dacd9aSBarry Smith 180972dacd9aSBarry Smith Contributed by: Mathew Knepley 181072dacd9aSBarry Smith */ 18119c957beeSSatish Balay /* must zero l->B before l->A because the (diag) case below may put values into l->B*/ 18126fa18ffdSBarry Smith ierr = MatZeroRows_SeqBAIJ(l->B,istmp,0);CHKERRQ(ierr); 18139c957beeSSatish Balay if (diag && (l->A->M == l->A->N)) { 18146fa18ffdSBarry Smith ierr = MatZeroRows_SeqBAIJ(l->A,istmp,diag);CHKERRQ(ierr); 18159c957beeSSatish Balay } else if (diag) { 18166fa18ffdSBarry Smith ierr = MatZeroRows_SeqBAIJ(l->A,istmp,0);CHKERRQ(ierr); 1817fa46199cSSatish Balay if (((Mat_SeqBAIJ*)l->A->data)->nonew) { 181829bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"MatZeroRows() on rectangular matrices cannot be used with the Mat options \n\ 1819fa46199cSSatish Balay MAT_NO_NEW_NONZERO_LOCATIONS,MAT_NEW_NONZERO_LOCATION_ERR,MAT_NEW_NONZERO_ALLOCATION_ERR"); 18206525c446SSatish Balay } 1821a07cd24cSSatish Balay for (i=0; i<slen; i++) { 1822a07cd24cSSatish Balay row = lrows[i] + rstart_bs; 18233f11ea53SBarry Smith ierr = MatSetValues(A,1,&row,1,&row,diag,INSERT_VALUES);CHKERRQ(ierr); 1824a07cd24cSSatish Balay } 1825a07cd24cSSatish Balay ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 1826a07cd24cSSatish Balay ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 18279c957beeSSatish Balay } else { 18286fa18ffdSBarry Smith ierr = MatZeroRows_SeqBAIJ(l->A,istmp,0);CHKERRQ(ierr); 1829a07cd24cSSatish Balay } 18309c957beeSSatish Balay 18319c957beeSSatish Balay ierr = ISDestroy(istmp);CHKERRQ(ierr); 1832606d414cSSatish Balay ierr = PetscFree(lrows);CHKERRQ(ierr); 1833a07cd24cSSatish Balay 18340ac07820SSatish Balay /* wait on sends */ 18350ac07820SSatish Balay if (nsends) { 183682502324SSatish Balay ierr = PetscMalloc(nsends*sizeof(MPI_Status),&send_status);CHKERRQ(ierr); 1837ca161407SBarry Smith ierr = MPI_Waitall(nsends,send_waits,send_status);CHKERRQ(ierr); 1838606d414cSSatish Balay ierr = PetscFree(send_status);CHKERRQ(ierr); 18390ac07820SSatish Balay } 1840606d414cSSatish Balay ierr = PetscFree(send_waits);CHKERRQ(ierr); 1841606d414cSSatish Balay ierr = PetscFree(svalues);CHKERRQ(ierr); 18420ac07820SSatish Balay 18433a40ed3dSBarry Smith PetscFunctionReturn(0); 18440ac07820SSatish Balay } 184572dacd9aSBarry Smith 18464a2ae208SSatish Balay #undef __FUNCT__ 18474a2ae208SSatish Balay #define __FUNCT__ "MatPrintHelp_MPIBAIJ" 1848dfbe8321SBarry Smith PetscErrorCode MatPrintHelp_MPIBAIJ(Mat A) 1849ba4ca20aSSatish Balay { 1850ba4ca20aSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 185125fdafccSSatish Balay MPI_Comm comm = A->comm; 1852*b24ad042SBarry Smith static PetscTruth called = PETSC_FALSE; 1853dfbe8321SBarry Smith PetscErrorCode ierr; 1854ba4ca20aSSatish Balay 1855d64ed03dSBarry Smith PetscFunctionBegin; 18563a40ed3dSBarry Smith if (!a->rank) { 18573a40ed3dSBarry Smith ierr = MatPrintHelp_SeqBAIJ(a->A);CHKERRQ(ierr); 185825fdafccSSatish Balay } 1859*b24ad042SBarry Smith if (called) {PetscFunctionReturn(0);} else called = PETSC_TRUE; 1860d132466eSBarry Smith ierr = (*PetscHelpPrintf)(comm," Options for MATMPIBAIJ matrix format (the defaults):\n");CHKERRQ(ierr); 1861d132466eSBarry Smith ierr = (*PetscHelpPrintf)(comm," -mat_use_hash_table <factor>: Use hashtable for efficient matrix assembly\n");CHKERRQ(ierr); 18623a40ed3dSBarry Smith PetscFunctionReturn(0); 1863ba4ca20aSSatish Balay } 18640ac07820SSatish Balay 18654a2ae208SSatish Balay #undef __FUNCT__ 18664a2ae208SSatish Balay #define __FUNCT__ "MatSetUnfactored_MPIBAIJ" 1867dfbe8321SBarry Smith PetscErrorCode MatSetUnfactored_MPIBAIJ(Mat A) 1868bb5a7306SBarry Smith { 1869bb5a7306SBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1870dfbe8321SBarry Smith PetscErrorCode ierr; 1871d64ed03dSBarry Smith 1872d64ed03dSBarry Smith PetscFunctionBegin; 1873bb5a7306SBarry Smith ierr = MatSetUnfactored(a->A);CHKERRQ(ierr); 18743a40ed3dSBarry Smith PetscFunctionReturn(0); 1875bb5a7306SBarry Smith } 1876bb5a7306SBarry Smith 18776849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIBAIJ(Mat,MatDuplicateOption,Mat *); 18780ac07820SSatish Balay 18794a2ae208SSatish Balay #undef __FUNCT__ 18804a2ae208SSatish Balay #define __FUNCT__ "MatEqual_MPIBAIJ" 1881dfbe8321SBarry Smith PetscErrorCode MatEqual_MPIBAIJ(Mat A,Mat B,PetscTruth *flag) 18827fc3c18eSBarry Smith { 18837fc3c18eSBarry Smith Mat_MPIBAIJ *matB = (Mat_MPIBAIJ*)B->data,*matA = (Mat_MPIBAIJ*)A->data; 18847fc3c18eSBarry Smith Mat a,b,c,d; 18857fc3c18eSBarry Smith PetscTruth flg; 1886dfbe8321SBarry Smith PetscErrorCode ierr; 18877fc3c18eSBarry Smith 18887fc3c18eSBarry Smith PetscFunctionBegin; 18897fc3c18eSBarry Smith a = matA->A; b = matA->B; 18907fc3c18eSBarry Smith c = matB->A; d = matB->B; 18917fc3c18eSBarry Smith 18927fc3c18eSBarry Smith ierr = MatEqual(a,c,&flg);CHKERRQ(ierr); 18937fc3c18eSBarry Smith if (flg == PETSC_TRUE) { 18947fc3c18eSBarry Smith ierr = MatEqual(b,d,&flg);CHKERRQ(ierr); 18957fc3c18eSBarry Smith } 18967fc3c18eSBarry Smith ierr = MPI_Allreduce(&flg,flag,1,MPI_INT,MPI_LAND,A->comm);CHKERRQ(ierr); 18977fc3c18eSBarry Smith PetscFunctionReturn(0); 18987fc3c18eSBarry Smith } 18997fc3c18eSBarry Smith 1900273d9f13SBarry Smith 19014a2ae208SSatish Balay #undef __FUNCT__ 19024a2ae208SSatish Balay #define __FUNCT__ "MatSetUpPreallocation_MPIBAIJ" 1903dfbe8321SBarry Smith PetscErrorCode MatSetUpPreallocation_MPIBAIJ(Mat A) 1904273d9f13SBarry Smith { 1905dfbe8321SBarry Smith PetscErrorCode ierr; 1906273d9f13SBarry Smith 1907273d9f13SBarry Smith PetscFunctionBegin; 1908273d9f13SBarry Smith ierr = MatMPIBAIJSetPreallocation(A,1,PETSC_DEFAULT,0,PETSC_DEFAULT,0);CHKERRQ(ierr); 1909273d9f13SBarry Smith PetscFunctionReturn(0); 1910273d9f13SBarry Smith } 1911273d9f13SBarry Smith 191279bdfe76SSatish Balay /* -------------------------------------------------------------------*/ 1913cc2dc46cSBarry Smith static struct _MatOps MatOps_Values = { 1914cc2dc46cSBarry Smith MatSetValues_MPIBAIJ, 1915cc2dc46cSBarry Smith MatGetRow_MPIBAIJ, 1916cc2dc46cSBarry Smith MatRestoreRow_MPIBAIJ, 1917cc2dc46cSBarry Smith MatMult_MPIBAIJ, 191897304618SKris Buschelman /* 4*/ MatMultAdd_MPIBAIJ, 19197c922b88SBarry Smith MatMultTranspose_MPIBAIJ, 19207c922b88SBarry Smith MatMultTransposeAdd_MPIBAIJ, 1921cc2dc46cSBarry Smith 0, 1922cc2dc46cSBarry Smith 0, 1923cc2dc46cSBarry Smith 0, 192497304618SKris Buschelman /*10*/ 0, 1925cc2dc46cSBarry Smith 0, 1926cc2dc46cSBarry Smith 0, 1927cc2dc46cSBarry Smith 0, 1928cc2dc46cSBarry Smith MatTranspose_MPIBAIJ, 192997304618SKris Buschelman /*15*/ MatGetInfo_MPIBAIJ, 19307fc3c18eSBarry Smith MatEqual_MPIBAIJ, 1931cc2dc46cSBarry Smith MatGetDiagonal_MPIBAIJ, 1932cc2dc46cSBarry Smith MatDiagonalScale_MPIBAIJ, 1933cc2dc46cSBarry Smith MatNorm_MPIBAIJ, 193497304618SKris Buschelman /*20*/ MatAssemblyBegin_MPIBAIJ, 1935cc2dc46cSBarry Smith MatAssemblyEnd_MPIBAIJ, 1936cc2dc46cSBarry Smith 0, 1937cc2dc46cSBarry Smith MatSetOption_MPIBAIJ, 1938cc2dc46cSBarry Smith MatZeroEntries_MPIBAIJ, 193997304618SKris Buschelman /*25*/ MatZeroRows_MPIBAIJ, 1940cc2dc46cSBarry Smith 0, 1941cc2dc46cSBarry Smith 0, 1942cc2dc46cSBarry Smith 0, 1943cc2dc46cSBarry Smith 0, 194497304618SKris Buschelman /*30*/ MatSetUpPreallocation_MPIBAIJ, 1945273d9f13SBarry Smith 0, 1946cc2dc46cSBarry Smith 0, 1947cc2dc46cSBarry Smith 0, 1948cc2dc46cSBarry Smith 0, 194997304618SKris Buschelman /*35*/ MatDuplicate_MPIBAIJ, 1950cc2dc46cSBarry Smith 0, 1951cc2dc46cSBarry Smith 0, 1952cc2dc46cSBarry Smith 0, 1953cc2dc46cSBarry Smith 0, 195497304618SKris Buschelman /*40*/ 0, 1955cc2dc46cSBarry Smith MatGetSubMatrices_MPIBAIJ, 1956cc2dc46cSBarry Smith MatIncreaseOverlap_MPIBAIJ, 1957cc2dc46cSBarry Smith MatGetValues_MPIBAIJ, 1958cc2dc46cSBarry Smith 0, 195997304618SKris Buschelman /*45*/ MatPrintHelp_MPIBAIJ, 1960cc2dc46cSBarry Smith MatScale_MPIBAIJ, 1961cc2dc46cSBarry Smith 0, 1962cc2dc46cSBarry Smith 0, 1963cc2dc46cSBarry Smith 0, 196497304618SKris Buschelman /*50*/ MatGetBlockSize_MPIBAIJ, 1965cc2dc46cSBarry Smith 0, 1966cc2dc46cSBarry Smith 0, 1967cc2dc46cSBarry Smith 0, 1968cc2dc46cSBarry Smith 0, 196997304618SKris Buschelman /*55*/ 0, 1970cc2dc46cSBarry Smith 0, 1971cc2dc46cSBarry Smith MatSetUnfactored_MPIBAIJ, 1972cc2dc46cSBarry Smith 0, 1973cc2dc46cSBarry Smith MatSetValuesBlocked_MPIBAIJ, 197497304618SKris Buschelman /*60*/ 0, 1975f14a1c24SBarry Smith MatDestroy_MPIBAIJ, 1976f14a1c24SBarry Smith MatView_MPIBAIJ, 19778a124369SBarry Smith MatGetPetscMaps_Petsc, 19787843d17aSBarry Smith 0, 197997304618SKris Buschelman /*65*/ 0, 19807843d17aSBarry Smith 0, 19817843d17aSBarry Smith 0, 19827843d17aSBarry Smith 0, 19837843d17aSBarry Smith 0, 198497304618SKris Buschelman /*70*/ MatGetRowMax_MPIBAIJ, 19857843d17aSBarry Smith 0, 198697304618SKris Buschelman 0, 198797304618SKris Buschelman 0, 198897304618SKris Buschelman 0, 198997304618SKris Buschelman /*75*/ 0, 199097304618SKris Buschelman 0, 199197304618SKris Buschelman 0, 199297304618SKris Buschelman 0, 199397304618SKris Buschelman 0, 199497304618SKris Buschelman /*80*/ 0, 199597304618SKris Buschelman 0, 199697304618SKris Buschelman 0, 199797304618SKris Buschelman 0, 1998865e5f61SKris Buschelman MatLoad_MPIBAIJ, 1999865e5f61SKris Buschelman /*85*/ 0, 2000865e5f61SKris Buschelman 0, 2001865e5f61SKris Buschelman 0, 2002865e5f61SKris Buschelman 0, 2003865e5f61SKris Buschelman 0, 2004865e5f61SKris Buschelman /*90*/ 0, 2005865e5f61SKris Buschelman 0, 2006865e5f61SKris Buschelman 0, 2007865e5f61SKris Buschelman 0, 2008865e5f61SKris Buschelman 0, 2009865e5f61SKris Buschelman /*95*/ 0, 2010865e5f61SKris Buschelman 0, 2011865e5f61SKris Buschelman 0, 2012865e5f61SKris Buschelman 0}; 201379bdfe76SSatish Balay 20145ef9f2a5SBarry Smith 2015e18c124aSSatish Balay EXTERN_C_BEGIN 20164a2ae208SSatish Balay #undef __FUNCT__ 20174a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonalBlock_MPIBAIJ" 2018dfbe8321SBarry Smith PetscErrorCode MatGetDiagonalBlock_MPIBAIJ(Mat A,PetscTruth *iscopy,MatReuse reuse,Mat *a) 20195ef9f2a5SBarry Smith { 20205ef9f2a5SBarry Smith PetscFunctionBegin; 20215ef9f2a5SBarry Smith *a = ((Mat_MPIBAIJ *)A->data)->A; 20225ef9f2a5SBarry Smith *iscopy = PETSC_FALSE; 20235ef9f2a5SBarry Smith PetscFunctionReturn(0); 20245ef9f2a5SBarry Smith } 2025e18c124aSSatish Balay EXTERN_C_END 202679bdfe76SSatish Balay 2027273d9f13SBarry Smith EXTERN_C_BEGIN 2028d94109b8SHong Zhang extern int MatConvert_MPIBAIJ_MPISBAIJ(Mat,const MatType,Mat*); 2029d94109b8SHong Zhang EXTERN_C_END 2030d94109b8SHong Zhang 2031d94109b8SHong Zhang EXTERN_C_BEGIN 20324a2ae208SSatish Balay #undef __FUNCT__ 2033a23d5eceSKris Buschelman #define __FUNCT__ "MatMPIBAIJSetPreallocation_MPIBAIJ" 2034*b24ad042SBarry Smith PetscErrorCode MatMPIBAIJSetPreallocation_MPIBAIJ(Mat B,PetscInt bs,PetscInt d_nz,PetscInt *d_nnz,PetscInt o_nz,PetscInt *o_nnz) 2035a23d5eceSKris Buschelman { 2036a23d5eceSKris Buschelman Mat_MPIBAIJ *b; 2037dfbe8321SBarry Smith PetscErrorCode ierr; 2038*b24ad042SBarry Smith PetscInt i; 2039a23d5eceSKris Buschelman 2040a23d5eceSKris Buschelman PetscFunctionBegin; 2041a23d5eceSKris Buschelman B->preallocated = PETSC_TRUE; 2042a23d5eceSKris Buschelman ierr = PetscOptionsGetInt(PETSC_NULL,"-mat_block_size",&bs,PETSC_NULL);CHKERRQ(ierr); 2043a23d5eceSKris Buschelman 2044a23d5eceSKris Buschelman if (bs < 1) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Invalid block size specified, must be positive"); 2045a23d5eceSKris Buschelman if (d_nz == PETSC_DEFAULT || d_nz == PETSC_DECIDE) d_nz = 5; 2046a23d5eceSKris Buschelman if (o_nz == PETSC_DEFAULT || o_nz == PETSC_DECIDE) o_nz = 2; 2047a23d5eceSKris Buschelman if (d_nz < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"d_nz cannot be less than 0: value %d",d_nz); 2048a23d5eceSKris Buschelman if (o_nz < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"o_nz cannot be less than 0: value %d",o_nz); 2049a23d5eceSKris Buschelman if (d_nnz) { 2050a23d5eceSKris Buschelman for (i=0; i<B->m/bs; i++) { 2051a23d5eceSKris Buschelman if (d_nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"d_nnz cannot be less than -1: local row %d value %d",i,d_nnz[i]); 2052a23d5eceSKris Buschelman } 2053a23d5eceSKris Buschelman } 2054a23d5eceSKris Buschelman if (o_nnz) { 2055a23d5eceSKris Buschelman for (i=0; i<B->m/bs; i++) { 2056a23d5eceSKris Buschelman if (o_nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"o_nnz cannot be less than -1: local row %d value %d",i,o_nnz[i]); 2057a23d5eceSKris Buschelman } 2058a23d5eceSKris Buschelman } 2059a23d5eceSKris Buschelman 2060a23d5eceSKris Buschelman ierr = PetscSplitOwnershipBlock(B->comm,bs,&B->m,&B->M);CHKERRQ(ierr); 2061a23d5eceSKris Buschelman ierr = PetscSplitOwnershipBlock(B->comm,bs,&B->n,&B->N);CHKERRQ(ierr); 2062a23d5eceSKris Buschelman ierr = PetscMapCreateMPI(B->comm,B->m,B->M,&B->rmap);CHKERRQ(ierr); 2063a23d5eceSKris Buschelman ierr = PetscMapCreateMPI(B->comm,B->n,B->N,&B->cmap);CHKERRQ(ierr); 2064a23d5eceSKris Buschelman 2065a23d5eceSKris Buschelman b = (Mat_MPIBAIJ*)B->data; 2066a23d5eceSKris Buschelman b->bs = bs; 2067a23d5eceSKris Buschelman b->bs2 = bs*bs; 2068a23d5eceSKris Buschelman b->mbs = B->m/bs; 2069a23d5eceSKris Buschelman b->nbs = B->n/bs; 2070a23d5eceSKris Buschelman b->Mbs = B->M/bs; 2071a23d5eceSKris Buschelman b->Nbs = B->N/bs; 2072a23d5eceSKris Buschelman 2073*b24ad042SBarry Smith ierr = MPI_Allgather(&b->mbs,1,MPIU_INT,b->rowners+1,1,MPIU_INT,B->comm);CHKERRQ(ierr); 2074a23d5eceSKris Buschelman b->rowners[0] = 0; 2075a23d5eceSKris Buschelman for (i=2; i<=b->size; i++) { 2076a23d5eceSKris Buschelman b->rowners[i] += b->rowners[i-1]; 2077a23d5eceSKris Buschelman } 2078a23d5eceSKris Buschelman b->rstart = b->rowners[b->rank]; 2079a23d5eceSKris Buschelman b->rend = b->rowners[b->rank+1]; 2080a23d5eceSKris Buschelman 2081*b24ad042SBarry Smith ierr = MPI_Allgather(&b->nbs,1,MPIU_INT,b->cowners+1,1,MPIU_INT,B->comm);CHKERRQ(ierr); 2082a23d5eceSKris Buschelman b->cowners[0] = 0; 2083a23d5eceSKris Buschelman for (i=2; i<=b->size; i++) { 2084a23d5eceSKris Buschelman b->cowners[i] += b->cowners[i-1]; 2085a23d5eceSKris Buschelman } 2086a23d5eceSKris Buschelman b->cstart = b->cowners[b->rank]; 2087a23d5eceSKris Buschelman b->cend = b->cowners[b->rank+1]; 2088a23d5eceSKris Buschelman 2089a23d5eceSKris Buschelman for (i=0; i<=b->size; i++) { 2090a23d5eceSKris Buschelman b->rowners_bs[i] = b->rowners[i]*bs; 2091a23d5eceSKris Buschelman } 2092a23d5eceSKris Buschelman b->rstart_bs = b->rstart*bs; 2093a23d5eceSKris Buschelman b->rend_bs = b->rend*bs; 2094a23d5eceSKris Buschelman b->cstart_bs = b->cstart*bs; 2095a23d5eceSKris Buschelman b->cend_bs = b->cend*bs; 2096a23d5eceSKris Buschelman 20979c097c71SKris Buschelman ierr = MatCreate(PETSC_COMM_SELF,B->m,B->n,B->m,B->n,&b->A);CHKERRQ(ierr); 20989c097c71SKris Buschelman ierr = MatSetType(b->A,MATSEQBAIJ);CHKERRQ(ierr); 2099c60e587dSKris Buschelman ierr = MatSeqBAIJSetPreallocation(b->A,bs,d_nz,d_nnz);CHKERRQ(ierr); 21009c097c71SKris Buschelman PetscLogObjectParent(B,b->A); 21019c097c71SKris Buschelman ierr = MatCreate(PETSC_COMM_SELF,B->m,B->N,B->m,B->N,&b->B);CHKERRQ(ierr); 21029c097c71SKris Buschelman ierr = MatSetType(b->B,MATSEQBAIJ);CHKERRQ(ierr); 2103c60e587dSKris Buschelman ierr = MatSeqBAIJSetPreallocation(b->B,bs,o_nz,o_nnz);CHKERRQ(ierr); 21049c097c71SKris Buschelman PetscLogObjectParent(B,b->B); 2105c60e587dSKris Buschelman 2106a23d5eceSKris Buschelman ierr = MatStashCreate_Private(B->comm,bs,&B->bstash);CHKERRQ(ierr); 2107a23d5eceSKris Buschelman 2108a23d5eceSKris Buschelman PetscFunctionReturn(0); 2109a23d5eceSKris Buschelman } 2110a23d5eceSKris Buschelman EXTERN_C_END 2111a23d5eceSKris Buschelman 2112a23d5eceSKris Buschelman EXTERN_C_BEGIN 2113dfbe8321SBarry Smith EXTERN PetscErrorCode MatDiagonalScaleLocal_MPIBAIJ(Mat,Vec); 2114dfbe8321SBarry Smith EXTERN PetscErrorCode MatSetHashTableFactor_MPIBAIJ(Mat,PetscReal); 211592b32695SKris Buschelman EXTERN_C_END 21165bf65638SKris Buschelman 21170bad9183SKris Buschelman /*MC 2118fafad747SKris Buschelman MATMPIBAIJ - MATMPIBAIJ = "mpibaij" - A matrix type to be used for distributed block sparse matrices. 21190bad9183SKris Buschelman 21200bad9183SKris Buschelman Options Database Keys: 21210bad9183SKris Buschelman . -mat_type mpibaij - sets the matrix type to "mpibaij" during a call to MatSetFromOptions() 21220bad9183SKris Buschelman 21230bad9183SKris Buschelman Level: beginner 21240bad9183SKris Buschelman 21250bad9183SKris Buschelman .seealso: MatCreateMPIBAIJ 21260bad9183SKris Buschelman M*/ 21270bad9183SKris Buschelman 212892b32695SKris Buschelman EXTERN_C_BEGIN 2129a23d5eceSKris Buschelman #undef __FUNCT__ 21304a2ae208SSatish Balay #define __FUNCT__ "MatCreate_MPIBAIJ" 2131dfbe8321SBarry Smith PetscErrorCode MatCreate_MPIBAIJ(Mat B) 2132273d9f13SBarry Smith { 2133273d9f13SBarry Smith Mat_MPIBAIJ *b; 2134dfbe8321SBarry Smith PetscErrorCode ierr; 2135273d9f13SBarry Smith PetscTruth flg; 2136273d9f13SBarry Smith 2137273d9f13SBarry Smith PetscFunctionBegin; 213882502324SSatish Balay ierr = PetscNew(Mat_MPIBAIJ,&b);CHKERRQ(ierr); 213982502324SSatish Balay B->data = (void*)b; 214082502324SSatish Balay 2141273d9f13SBarry Smith ierr = PetscMemzero(b,sizeof(Mat_MPIBAIJ));CHKERRQ(ierr); 2142273d9f13SBarry Smith ierr = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr); 2143273d9f13SBarry Smith B->mapping = 0; 2144273d9f13SBarry Smith B->factor = 0; 2145273d9f13SBarry Smith B->assembled = PETSC_FALSE; 2146273d9f13SBarry Smith 2147273d9f13SBarry Smith B->insertmode = NOT_SET_VALUES; 2148273d9f13SBarry Smith ierr = MPI_Comm_rank(B->comm,&b->rank);CHKERRQ(ierr); 2149273d9f13SBarry Smith ierr = MPI_Comm_size(B->comm,&b->size);CHKERRQ(ierr); 2150273d9f13SBarry Smith 2151273d9f13SBarry Smith /* build local table of row and column ownerships */ 2152*b24ad042SBarry Smith ierr = PetscMalloc(3*(b->size+2)*sizeof(PetscInt),&b->rowners);CHKERRQ(ierr); 2153*b24ad042SBarry Smith PetscLogObjectMemory(B,3*(b->size+2)*sizeof(PetscInt)+sizeof(struct _p_Mat)+sizeof(Mat_MPIBAIJ)); 2154273d9f13SBarry Smith b->cowners = b->rowners + b->size + 2; 2155273d9f13SBarry Smith b->rowners_bs = b->cowners + b->size + 2; 2156273d9f13SBarry Smith 2157273d9f13SBarry Smith /* build cache for off array entries formed */ 2158273d9f13SBarry Smith ierr = MatStashCreate_Private(B->comm,1,&B->stash);CHKERRQ(ierr); 2159273d9f13SBarry Smith b->donotstash = PETSC_FALSE; 2160273d9f13SBarry Smith b->colmap = PETSC_NULL; 2161273d9f13SBarry Smith b->garray = PETSC_NULL; 2162273d9f13SBarry Smith b->roworiented = PETSC_TRUE; 2163273d9f13SBarry Smith 2164cfce73b9SSatish Balay #if defined(PETSC_USE_MAT_SINGLE) 2165273d9f13SBarry Smith /* stuff for MatSetValues_XXX in single precision */ 216664a35ccbSBarry Smith b->setvalueslen = 0; 2167273d9f13SBarry Smith b->setvaluescopy = PETSC_NULL; 2168273d9f13SBarry Smith #endif 2169273d9f13SBarry Smith 2170273d9f13SBarry Smith /* stuff used in block assembly */ 2171273d9f13SBarry Smith b->barray = 0; 2172273d9f13SBarry Smith 2173273d9f13SBarry Smith /* stuff used for matrix vector multiply */ 2174273d9f13SBarry Smith b->lvec = 0; 2175273d9f13SBarry Smith b->Mvctx = 0; 2176273d9f13SBarry Smith 2177273d9f13SBarry Smith /* stuff for MatGetRow() */ 2178273d9f13SBarry Smith b->rowindices = 0; 2179273d9f13SBarry Smith b->rowvalues = 0; 2180273d9f13SBarry Smith b->getrowactive = PETSC_FALSE; 2181273d9f13SBarry Smith 2182273d9f13SBarry Smith /* hash table stuff */ 2183273d9f13SBarry Smith b->ht = 0; 2184273d9f13SBarry Smith b->hd = 0; 2185273d9f13SBarry Smith b->ht_size = 0; 2186273d9f13SBarry Smith b->ht_flag = PETSC_FALSE; 2187273d9f13SBarry Smith b->ht_fact = 0; 2188273d9f13SBarry Smith b->ht_total_ct = 0; 2189273d9f13SBarry Smith b->ht_insert_ct = 0; 2190273d9f13SBarry Smith 2191b0a32e0cSBarry Smith ierr = PetscOptionsHasName(PETSC_NULL,"-mat_use_hash_table",&flg);CHKERRQ(ierr); 2192273d9f13SBarry Smith if (flg) { 2193f6275e2eSBarry Smith PetscReal fact = 1.39; 2194273d9f13SBarry Smith ierr = MatSetOption(B,MAT_USE_HASH_TABLE);CHKERRQ(ierr); 219587828ca2SBarry Smith ierr = PetscOptionsGetReal(PETSC_NULL,"-mat_use_hash_table",&fact,PETSC_NULL);CHKERRQ(ierr); 2196273d9f13SBarry Smith if (fact <= 1.0) fact = 1.39; 2197273d9f13SBarry Smith ierr = MatMPIBAIJSetHashTableFactor(B,fact);CHKERRQ(ierr); 2198b0a32e0cSBarry Smith PetscLogInfo(0,"MatCreateMPIBAIJ:Hash table Factor used %5.2f\n",fact); 2199273d9f13SBarry Smith } 2200273d9f13SBarry Smith ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatStoreValues_C", 2201273d9f13SBarry Smith "MatStoreValues_MPIBAIJ", 2202273d9f13SBarry Smith MatStoreValues_MPIBAIJ);CHKERRQ(ierr); 2203273d9f13SBarry Smith ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatRetrieveValues_C", 2204273d9f13SBarry Smith "MatRetrieveValues_MPIBAIJ", 2205273d9f13SBarry Smith MatRetrieveValues_MPIBAIJ);CHKERRQ(ierr); 2206273d9f13SBarry Smith ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetDiagonalBlock_C", 2207273d9f13SBarry Smith "MatGetDiagonalBlock_MPIBAIJ", 2208273d9f13SBarry Smith MatGetDiagonalBlock_MPIBAIJ);CHKERRQ(ierr); 2209a23d5eceSKris Buschelman ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatMPIBAIJSetPreallocation_C", 2210a23d5eceSKris Buschelman "MatMPIBAIJSetPreallocation_MPIBAIJ", 2211a23d5eceSKris Buschelman MatMPIBAIJSetPreallocation_MPIBAIJ);CHKERRQ(ierr); 221292b32695SKris Buschelman ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatDiagonalScaleLocal_C", 221392b32695SKris Buschelman "MatDiagonalScaleLocal_MPIBAIJ", 221492b32695SKris Buschelman MatDiagonalScaleLocal_MPIBAIJ);CHKERRQ(ierr); 22155bf65638SKris Buschelman ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatSetHashTableFactor_C", 22165bf65638SKris Buschelman "MatSetHashTableFactor_MPIBAIJ", 22175bf65638SKris Buschelman MatSetHashTableFactor_MPIBAIJ);CHKERRQ(ierr); 2218273d9f13SBarry Smith PetscFunctionReturn(0); 2219273d9f13SBarry Smith } 2220273d9f13SBarry Smith EXTERN_C_END 2221273d9f13SBarry Smith 2222209238afSKris Buschelman /*MC 2223002d173eSKris Buschelman MATBAIJ - MATBAIJ = "baij" - A matrix type to be used for block sparse matrices. 2224209238afSKris Buschelman 2225209238afSKris Buschelman This matrix type is identical to MATSEQBAIJ when constructed with a single process communicator, 2226209238afSKris Buschelman and MATMPIBAIJ otherwise. 2227209238afSKris Buschelman 2228209238afSKris Buschelman Options Database Keys: 2229209238afSKris Buschelman . -mat_type baij - sets the matrix type to "baij" during a call to MatSetFromOptions() 2230209238afSKris Buschelman 2231209238afSKris Buschelman Level: beginner 2232209238afSKris Buschelman 2233209238afSKris Buschelman .seealso: MatCreateMPIBAIJ,MATSEQBAIJ,MATMPIBAIJ 2234209238afSKris Buschelman M*/ 2235209238afSKris Buschelman 2236209238afSKris Buschelman EXTERN_C_BEGIN 2237209238afSKris Buschelman #undef __FUNCT__ 2238209238afSKris Buschelman #define __FUNCT__ "MatCreate_BAIJ" 2239dfbe8321SBarry Smith PetscErrorCode MatCreate_BAIJ(Mat A) 2240dfbe8321SBarry Smith { 22416849ba73SBarry Smith PetscErrorCode ierr; 2242*b24ad042SBarry Smith PetscMPIInt size; 2243209238afSKris Buschelman 2244209238afSKris Buschelman PetscFunctionBegin; 2245209238afSKris Buschelman ierr = PetscObjectChangeTypeName((PetscObject)A,MATBAIJ);CHKERRQ(ierr); 2246209238afSKris Buschelman ierr = MPI_Comm_size(A->comm,&size);CHKERRQ(ierr); 2247209238afSKris Buschelman if (size == 1) { 2248209238afSKris Buschelman ierr = MatSetType(A,MATSEQBAIJ);CHKERRQ(ierr); 2249209238afSKris Buschelman } else { 2250209238afSKris Buschelman ierr = MatSetType(A,MATMPIBAIJ);CHKERRQ(ierr); 2251209238afSKris Buschelman } 2252209238afSKris Buschelman PetscFunctionReturn(0); 2253209238afSKris Buschelman } 2254209238afSKris Buschelman EXTERN_C_END 2255209238afSKris Buschelman 22564a2ae208SSatish Balay #undef __FUNCT__ 22574a2ae208SSatish Balay #define __FUNCT__ "MatMPIBAIJSetPreallocation" 2258273d9f13SBarry Smith /*@C 2259273d9f13SBarry Smith MatMPIBAIJSetPreallocation - Creates a sparse parallel matrix in block AIJ format 2260273d9f13SBarry Smith (block compressed row). For good matrix assembly performance 2261273d9f13SBarry Smith the user should preallocate the matrix storage by setting the parameters 2262273d9f13SBarry Smith d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 2263273d9f13SBarry Smith performance can be increased by more than a factor of 50. 2264273d9f13SBarry Smith 2265273d9f13SBarry Smith Collective on Mat 2266273d9f13SBarry Smith 2267273d9f13SBarry Smith Input Parameters: 2268273d9f13SBarry Smith + A - the matrix 2269273d9f13SBarry Smith . bs - size of blockk 2270273d9f13SBarry Smith . d_nz - number of block nonzeros per block row in diagonal portion of local 2271273d9f13SBarry Smith submatrix (same for all local rows) 2272273d9f13SBarry Smith . d_nnz - array containing the number of block nonzeros in the various block rows 2273273d9f13SBarry Smith of the in diagonal portion of the local (possibly different for each block 2274273d9f13SBarry Smith row) or PETSC_NULL. You must leave room for the diagonal entry even if it is zero. 2275273d9f13SBarry Smith . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 2276273d9f13SBarry Smith submatrix (same for all local rows). 2277273d9f13SBarry Smith - o_nnz - array containing the number of nonzeros in the various block rows of the 2278273d9f13SBarry Smith off-diagonal portion of the local submatrix (possibly different for 2279273d9f13SBarry Smith each block row) or PETSC_NULL. 2280273d9f13SBarry Smith 2281273d9f13SBarry Smith Output Parameter: 2282273d9f13SBarry Smith 2283273d9f13SBarry Smith 2284273d9f13SBarry Smith Options Database Keys: 2285273d9f13SBarry Smith . -mat_no_unroll - uses code that does not unroll the loops in the 2286273d9f13SBarry Smith block calculations (much slower) 2287273d9f13SBarry Smith . -mat_block_size - size of the blocks to use 2288273d9f13SBarry Smith 2289273d9f13SBarry Smith Notes: 2290273d9f13SBarry Smith If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one processor 2291273d9f13SBarry Smith than it must be used on all processors that share the object for that argument. 2292273d9f13SBarry Smith 2293273d9f13SBarry Smith Storage Information: 2294273d9f13SBarry Smith For a square global matrix we define each processor's diagonal portion 2295273d9f13SBarry Smith to be its local rows and the corresponding columns (a square submatrix); 2296273d9f13SBarry Smith each processor's off-diagonal portion encompasses the remainder of the 2297273d9f13SBarry Smith local matrix (a rectangular submatrix). 2298273d9f13SBarry Smith 2299273d9f13SBarry Smith The user can specify preallocated storage for the diagonal part of 2300273d9f13SBarry Smith the local submatrix with either d_nz or d_nnz (not both). Set 2301273d9f13SBarry Smith d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic 2302273d9f13SBarry Smith memory allocation. Likewise, specify preallocated storage for the 2303273d9f13SBarry Smith off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 2304273d9f13SBarry Smith 2305273d9f13SBarry Smith Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 2306273d9f13SBarry Smith the figure below we depict these three local rows and all columns (0-11). 2307273d9f13SBarry Smith 2308273d9f13SBarry Smith .vb 2309273d9f13SBarry Smith 0 1 2 3 4 5 6 7 8 9 10 11 2310273d9f13SBarry Smith ------------------- 2311273d9f13SBarry Smith row 3 | o o o d d d o o o o o o 2312273d9f13SBarry Smith row 4 | o o o d d d o o o o o o 2313273d9f13SBarry Smith row 5 | o o o d d d o o o o o o 2314273d9f13SBarry Smith ------------------- 2315273d9f13SBarry Smith .ve 2316273d9f13SBarry Smith 2317273d9f13SBarry Smith Thus, any entries in the d locations are stored in the d (diagonal) 2318273d9f13SBarry Smith submatrix, and any entries in the o locations are stored in the 2319273d9f13SBarry Smith o (off-diagonal) submatrix. Note that the d and the o submatrices are 2320273d9f13SBarry Smith stored simply in the MATSEQBAIJ format for compressed row storage. 2321273d9f13SBarry Smith 2322273d9f13SBarry Smith Now d_nz should indicate the number of block nonzeros per row in the d matrix, 2323273d9f13SBarry Smith and o_nz should indicate the number of block nonzeros per row in the o matrix. 2324273d9f13SBarry Smith In general, for PDE problems in which most nonzeros are near the diagonal, 2325273d9f13SBarry Smith one expects d_nz >> o_nz. For large problems you MUST preallocate memory 2326273d9f13SBarry Smith or you will get TERRIBLE performance; see the users' manual chapter on 2327273d9f13SBarry Smith matrices. 2328273d9f13SBarry Smith 2329273d9f13SBarry Smith Level: intermediate 2330273d9f13SBarry Smith 2331273d9f13SBarry Smith .keywords: matrix, block, aij, compressed row, sparse, parallel 2332273d9f13SBarry Smith 2333273d9f13SBarry Smith .seealso: MatCreate(), MatCreateSeqBAIJ(), MatSetValues(), MatCreateMPIBAIJ() 2334273d9f13SBarry Smith @*/ 2335*b24ad042SBarry Smith PetscErrorCode MatMPIBAIJSetPreallocation(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[]) 2336273d9f13SBarry Smith { 2337*b24ad042SBarry Smith PetscErrorCode ierr,(*f)(Mat,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[]); 2338273d9f13SBarry Smith 2339273d9f13SBarry Smith PetscFunctionBegin; 2340a23d5eceSKris Buschelman ierr = PetscObjectQueryFunction((PetscObject)B,"MatMPIBAIJSetPreallocation_C",(void (**)(void))&f);CHKERRQ(ierr); 2341a23d5eceSKris Buschelman if (f) { 2342a23d5eceSKris Buschelman ierr = (*f)(B,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr); 2343273d9f13SBarry Smith } 2344273d9f13SBarry Smith PetscFunctionReturn(0); 2345273d9f13SBarry Smith } 2346273d9f13SBarry Smith 23474a2ae208SSatish Balay #undef __FUNCT__ 23484a2ae208SSatish Balay #define __FUNCT__ "MatCreateMPIBAIJ" 234979bdfe76SSatish Balay /*@C 235079bdfe76SSatish Balay MatCreateMPIBAIJ - Creates a sparse parallel matrix in block AIJ format 235179bdfe76SSatish Balay (block compressed row). For good matrix assembly performance 235279bdfe76SSatish Balay the user should preallocate the matrix storage by setting the parameters 235379bdfe76SSatish Balay d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 235479bdfe76SSatish Balay performance can be increased by more than a factor of 50. 235579bdfe76SSatish Balay 2356db81eaa0SLois Curfman McInnes Collective on MPI_Comm 2357db81eaa0SLois Curfman McInnes 235879bdfe76SSatish Balay Input Parameters: 2359db81eaa0SLois Curfman McInnes + comm - MPI communicator 236079bdfe76SSatish Balay . bs - size of blockk 236179bdfe76SSatish Balay . m - number of local rows (or PETSC_DECIDE to have calculated if M is given) 236292e8d321SLois Curfman McInnes This value should be the same as the local size used in creating the 236392e8d321SLois Curfman McInnes y vector for the matrix-vector product y = Ax. 236492e8d321SLois Curfman McInnes . n - number of local columns (or PETSC_DECIDE to have calculated if N is given) 236592e8d321SLois Curfman McInnes This value should be the same as the local size used in creating the 236692e8d321SLois Curfman McInnes x vector for the matrix-vector product y = Ax. 2367be79a94dSBarry Smith . M - number of global rows (or PETSC_DETERMINE to have calculated if m is given) 2368be79a94dSBarry Smith . N - number of global columns (or PETSC_DETERMINE to have calculated if n is given) 236947a75d0bSBarry Smith . d_nz - number of nonzero blocks per block row in diagonal portion of local 237079bdfe76SSatish Balay submatrix (same for all local rows) 237147a75d0bSBarry Smith . d_nnz - array containing the number of nonzero blocks in the various block rows 237292e8d321SLois Curfman McInnes of the in diagonal portion of the local (possibly different for each block 2373db81eaa0SLois Curfman McInnes row) or PETSC_NULL. You must leave room for the diagonal entry even if it is zero. 237447a75d0bSBarry Smith . o_nz - number of nonzero blocks per block row in the off-diagonal portion of local 237579bdfe76SSatish Balay submatrix (same for all local rows). 237647a75d0bSBarry Smith - o_nnz - array containing the number of nonzero blocks in the various block rows of the 237792e8d321SLois Curfman McInnes off-diagonal portion of the local submatrix (possibly different for 237892e8d321SLois Curfman McInnes each block row) or PETSC_NULL. 237979bdfe76SSatish Balay 238079bdfe76SSatish Balay Output Parameter: 238179bdfe76SSatish Balay . A - the matrix 238279bdfe76SSatish Balay 2383db81eaa0SLois Curfman McInnes Options Database Keys: 2384db81eaa0SLois Curfman McInnes . -mat_no_unroll - uses code that does not unroll the loops in the 2385db81eaa0SLois Curfman McInnes block calculations (much slower) 2386db81eaa0SLois Curfman McInnes . -mat_block_size - size of the blocks to use 23873ffaccefSLois Curfman McInnes 2388b259b22eSLois Curfman McInnes Notes: 238947a75d0bSBarry Smith A nonzero block is any block that as 1 or more nonzeros in it 239047a75d0bSBarry Smith 239179bdfe76SSatish Balay The user MUST specify either the local or global matrix dimensions 239279bdfe76SSatish Balay (possibly both). 239379bdfe76SSatish Balay 2394be79a94dSBarry Smith If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one processor 2395be79a94dSBarry Smith than it must be used on all processors that share the object for that argument. 2396be79a94dSBarry Smith 239779bdfe76SSatish Balay Storage Information: 239879bdfe76SSatish Balay For a square global matrix we define each processor's diagonal portion 239979bdfe76SSatish Balay to be its local rows and the corresponding columns (a square submatrix); 240079bdfe76SSatish Balay each processor's off-diagonal portion encompasses the remainder of the 240179bdfe76SSatish Balay local matrix (a rectangular submatrix). 240279bdfe76SSatish Balay 240379bdfe76SSatish Balay The user can specify preallocated storage for the diagonal part of 240479bdfe76SSatish Balay the local submatrix with either d_nz or d_nnz (not both). Set 240579bdfe76SSatish Balay d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic 240679bdfe76SSatish Balay memory allocation. Likewise, specify preallocated storage for the 240779bdfe76SSatish Balay off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 240879bdfe76SSatish Balay 240979bdfe76SSatish Balay Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 241079bdfe76SSatish Balay the figure below we depict these three local rows and all columns (0-11). 241179bdfe76SSatish Balay 2412db81eaa0SLois Curfman McInnes .vb 2413db81eaa0SLois Curfman McInnes 0 1 2 3 4 5 6 7 8 9 10 11 2414db81eaa0SLois Curfman McInnes ------------------- 2415db81eaa0SLois Curfman McInnes row 3 | o o o d d d o o o o o o 2416db81eaa0SLois Curfman McInnes row 4 | o o o d d d o o o o o o 2417db81eaa0SLois Curfman McInnes row 5 | o o o d d d o o o o o o 2418db81eaa0SLois Curfman McInnes ------------------- 2419db81eaa0SLois Curfman McInnes .ve 242079bdfe76SSatish Balay 242179bdfe76SSatish Balay Thus, any entries in the d locations are stored in the d (diagonal) 242279bdfe76SSatish Balay submatrix, and any entries in the o locations are stored in the 242379bdfe76SSatish Balay o (off-diagonal) submatrix. Note that the d and the o submatrices are 242457b952d6SSatish Balay stored simply in the MATSEQBAIJ format for compressed row storage. 242579bdfe76SSatish Balay 2426d64ed03dSBarry Smith Now d_nz should indicate the number of block nonzeros per row in the d matrix, 2427d64ed03dSBarry Smith and o_nz should indicate the number of block nonzeros per row in the o matrix. 242879bdfe76SSatish Balay In general, for PDE problems in which most nonzeros are near the diagonal, 242992e8d321SLois Curfman McInnes one expects d_nz >> o_nz. For large problems you MUST preallocate memory 243092e8d321SLois Curfman McInnes or you will get TERRIBLE performance; see the users' manual chapter on 24316da5968aSLois Curfman McInnes matrices. 243279bdfe76SSatish Balay 2433027ccd11SLois Curfman McInnes Level: intermediate 2434027ccd11SLois Curfman McInnes 243592e8d321SLois Curfman McInnes .keywords: matrix, block, aij, compressed row, sparse, parallel 243679bdfe76SSatish Balay 24373eda8832SBarry Smith .seealso: MatCreate(), MatCreateSeqBAIJ(), MatSetValues(), MatCreateMPIBAIJ() 243879bdfe76SSatish Balay @*/ 2439*b24ad042SBarry Smith PetscErrorCode MatCreateMPIBAIJ(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[],Mat *A) 244079bdfe76SSatish Balay { 24416849ba73SBarry Smith PetscErrorCode ierr; 2442*b24ad042SBarry Smith PetscMPIInt size; 244379bdfe76SSatish Balay 2444d64ed03dSBarry Smith PetscFunctionBegin; 2445273d9f13SBarry Smith ierr = MatCreate(comm,m,n,M,N,A);CHKERRQ(ierr); 2446d132466eSBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 2447273d9f13SBarry Smith if (size > 1) { 2448273d9f13SBarry Smith ierr = MatSetType(*A,MATMPIBAIJ);CHKERRQ(ierr); 2449273d9f13SBarry Smith ierr = MatMPIBAIJSetPreallocation(*A,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr); 2450273d9f13SBarry Smith } else { 2451273d9f13SBarry Smith ierr = MatSetType(*A,MATSEQBAIJ);CHKERRQ(ierr); 2452273d9f13SBarry Smith ierr = MatSeqBAIJSetPreallocation(*A,bs,d_nz,d_nnz);CHKERRQ(ierr); 24533914022bSBarry Smith } 24543a40ed3dSBarry Smith PetscFunctionReturn(0); 245579bdfe76SSatish Balay } 2456026e39d0SSatish Balay 24574a2ae208SSatish Balay #undef __FUNCT__ 24584a2ae208SSatish Balay #define __FUNCT__ "MatDuplicate_MPIBAIJ" 24596849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIBAIJ(Mat matin,MatDuplicateOption cpvalues,Mat *newmat) 24600ac07820SSatish Balay { 24610ac07820SSatish Balay Mat mat; 24620ac07820SSatish Balay Mat_MPIBAIJ *a,*oldmat = (Mat_MPIBAIJ*)matin->data; 2463dfbe8321SBarry Smith PetscErrorCode ierr; 2464*b24ad042SBarry Smith PetscInt len=0; 24650ac07820SSatish Balay 2466d64ed03dSBarry Smith PetscFunctionBegin; 24670ac07820SSatish Balay *newmat = 0; 2468273d9f13SBarry Smith ierr = MatCreate(matin->comm,matin->m,matin->n,matin->M,matin->N,&mat);CHKERRQ(ierr); 2469be5d1d56SKris Buschelman ierr = MatSetType(mat,matin->type_name);CHKERRQ(ierr); 24701d5dac46SHong Zhang ierr = PetscMemcpy(mat->ops,matin->ops,sizeof(struct _MatOps));CHKERRQ(ierr); 24717fff6886SHong Zhang 24724beb1cfeSHong Zhang mat->factor = matin->factor; 2473273d9f13SBarry Smith mat->preallocated = PETSC_TRUE; 24740ac07820SSatish Balay mat->assembled = PETSC_TRUE; 24757fff6886SHong Zhang mat->insertmode = NOT_SET_VALUES; 24767fff6886SHong Zhang 2477273d9f13SBarry Smith a = (Mat_MPIBAIJ*)mat->data; 24780ac07820SSatish Balay a->bs = oldmat->bs; 24790ac07820SSatish Balay a->bs2 = oldmat->bs2; 24800ac07820SSatish Balay a->mbs = oldmat->mbs; 24810ac07820SSatish Balay a->nbs = oldmat->nbs; 24820ac07820SSatish Balay a->Mbs = oldmat->Mbs; 24830ac07820SSatish Balay a->Nbs = oldmat->Nbs; 24840ac07820SSatish Balay 24850ac07820SSatish Balay a->rstart = oldmat->rstart; 24860ac07820SSatish Balay a->rend = oldmat->rend; 24870ac07820SSatish Balay a->cstart = oldmat->cstart; 24880ac07820SSatish Balay a->cend = oldmat->cend; 24890ac07820SSatish Balay a->size = oldmat->size; 24900ac07820SSatish Balay a->rank = oldmat->rank; 2491aef5e8e0SSatish Balay a->donotstash = oldmat->donotstash; 2492aef5e8e0SSatish Balay a->roworiented = oldmat->roworiented; 2493aef5e8e0SSatish Balay a->rowindices = 0; 24940ac07820SSatish Balay a->rowvalues = 0; 24950ac07820SSatish Balay a->getrowactive = PETSC_FALSE; 249630793edcSSatish Balay a->barray = 0; 24973123a43fSSatish Balay a->rstart_bs = oldmat->rstart_bs; 24983123a43fSSatish Balay a->rend_bs = oldmat->rend_bs; 24993123a43fSSatish Balay a->cstart_bs = oldmat->cstart_bs; 25003123a43fSSatish Balay a->cend_bs = oldmat->cend_bs; 25010ac07820SSatish Balay 2502133cdb44SSatish Balay /* hash table stuff */ 2503133cdb44SSatish Balay a->ht = 0; 2504133cdb44SSatish Balay a->hd = 0; 2505133cdb44SSatish Balay a->ht_size = 0; 2506133cdb44SSatish Balay a->ht_flag = oldmat->ht_flag; 250725fdafccSSatish Balay a->ht_fact = oldmat->ht_fact; 2508133cdb44SSatish Balay a->ht_total_ct = 0; 2509133cdb44SSatish Balay a->ht_insert_ct = 0; 2510133cdb44SSatish Balay 2511*b24ad042SBarry Smith ierr = PetscMemcpy(a->rowners,oldmat->rowners,3*(a->size+2)*sizeof(PetscInt));CHKERRQ(ierr); 25128798bf22SSatish Balay ierr = MatStashCreate_Private(matin->comm,1,&mat->stash);CHKERRQ(ierr); 25138798bf22SSatish Balay ierr = MatStashCreate_Private(matin->comm,oldmat->bs,&mat->bstash);CHKERRQ(ierr); 25140ac07820SSatish Balay if (oldmat->colmap) { 2515aa482453SBarry Smith #if defined (PETSC_USE_CTABLE) 25160f5bd95cSBarry Smith ierr = PetscTableCreateCopy(oldmat->colmap,&a->colmap);CHKERRQ(ierr); 251748e59246SSatish Balay #else 2518*b24ad042SBarry Smith ierr = PetscMalloc((a->Nbs)*sizeof(PetscInt),&a->colmap);CHKERRQ(ierr); 2519*b24ad042SBarry Smith PetscLogObjectMemory(mat,(a->Nbs)*sizeof(PetscInt)); 2520*b24ad042SBarry Smith ierr = PetscMemcpy(a->colmap,oldmat->colmap,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr); 252148e59246SSatish Balay #endif 25220ac07820SSatish Balay } else a->colmap = 0; 25234beb1cfeSHong Zhang 25240ac07820SSatish Balay if (oldmat->garray && (len = ((Mat_SeqBAIJ*)(oldmat->B->data))->nbs)) { 2525*b24ad042SBarry Smith ierr = PetscMalloc(len*sizeof(PetscInt),&a->garray);CHKERRQ(ierr); 2526*b24ad042SBarry Smith PetscLogObjectMemory(mat,len*sizeof(PetscInt)); 2527*b24ad042SBarry Smith ierr = PetscMemcpy(a->garray,oldmat->garray,len*sizeof(PetscInt));CHKERRQ(ierr); 25280ac07820SSatish Balay } else a->garray = 0; 25290ac07820SSatish Balay 25300ac07820SSatish Balay ierr = VecDuplicate(oldmat->lvec,&a->lvec);CHKERRQ(ierr); 2531b0a32e0cSBarry Smith PetscLogObjectParent(mat,a->lvec); 25320ac07820SSatish Balay ierr = VecScatterCopy(oldmat->Mvctx,&a->Mvctx);CHKERRQ(ierr); 2533b0a32e0cSBarry Smith PetscLogObjectParent(mat,a->Mvctx); 25347fff6886SHong Zhang 25352e8a6d31SBarry Smith ierr = MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr); 2536b0a32e0cSBarry Smith PetscLogObjectParent(mat,a->A); 25372e8a6d31SBarry Smith ierr = MatDuplicate(oldmat->B,cpvalues,&a->B);CHKERRQ(ierr); 2538b0a32e0cSBarry Smith PetscLogObjectParent(mat,a->B); 2539b0a32e0cSBarry Smith ierr = PetscFListDuplicate(matin->qlist,&mat->qlist);CHKERRQ(ierr); 25400ac07820SSatish Balay *newmat = mat; 25414beb1cfeSHong Zhang 25423a40ed3dSBarry Smith PetscFunctionReturn(0); 25430ac07820SSatish Balay } 254457b952d6SSatish Balay 2545e090d566SSatish Balay #include "petscsys.h" 254657b952d6SSatish Balay 25474a2ae208SSatish Balay #undef __FUNCT__ 25484a2ae208SSatish Balay #define __FUNCT__ "MatLoad_MPIBAIJ" 2549dfbe8321SBarry Smith PetscErrorCode MatLoad_MPIBAIJ(PetscViewer viewer,const MatType type,Mat *newmat) 255057b952d6SSatish Balay { 255157b952d6SSatish Balay Mat A; 25526849ba73SBarry Smith PetscErrorCode ierr; 2553*b24ad042SBarry Smith int fd; 2554*b24ad042SBarry Smith PetscInt i,nz,j,rstart,rend; 255587828ca2SBarry Smith PetscScalar *vals,*buf; 255657b952d6SSatish Balay MPI_Comm comm = ((PetscObject)viewer)->comm; 255757b952d6SSatish Balay MPI_Status status; 2558*b24ad042SBarry Smith PetscMPIInt rank,size,maxnz; 2559*b24ad042SBarry Smith PetscInt header[4],*rowlengths = 0,M,N,m,*rowners,*cols; 2560*b24ad042SBarry Smith PetscMPIInt *locrowlens,*sndcounts = 0,*procsnz = 0,*browners; 2561*b24ad042SBarry Smith PetscInt jj,*mycols,*ibuf; 2562*b24ad042SBarry Smith PetscInt tag = ((PetscObject)viewer)->tag,bs=1,Mbs,mbs,extra_rows; 2563*b24ad042SBarry Smith PetscInt *dlens,*odlens,*mask,*masked1,*masked2,rowcount,odcount; 2564*b24ad042SBarry Smith PetscInt dcount,kmax,k,nzcount,tmp; 256557b952d6SSatish Balay 2566d64ed03dSBarry Smith PetscFunctionBegin; 2567b0a32e0cSBarry Smith ierr = PetscOptionsGetInt(PETSC_NULL,"-matload_block_size",&bs,PETSC_NULL);CHKERRQ(ierr); 256857b952d6SSatish Balay 2569d132466eSBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 2570d132466eSBarry Smith ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 257157b952d6SSatish Balay if (!rank) { 2572b0a32e0cSBarry Smith ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr); 2573e5638eb3SBarry Smith ierr = PetscBinaryRead(fd,(char *)header,4,PETSC_INT);CHKERRQ(ierr); 2574552e946dSBarry Smith if (header[0] != MAT_FILE_COOKIE) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"not matrix object"); 2575d64ed03dSBarry Smith if (header[3] < 0) { 257629bbc08cSBarry Smith SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"Matrix stored in special format, cannot load as MPIBAIJ"); 2577d64ed03dSBarry Smith } 25786c5fab8fSBarry Smith } 2579d64ed03dSBarry Smith 2580*b24ad042SBarry Smith ierr = MPI_Bcast(header+1,3,MPIU_INT,0,comm);CHKERRQ(ierr); 258157b952d6SSatish Balay M = header[1]; N = header[2]; 258257b952d6SSatish Balay 258329bbc08cSBarry Smith if (M != N) SETERRQ(PETSC_ERR_SUP,"Can only do square matrices"); 258457b952d6SSatish Balay 258557b952d6SSatish Balay /* 258657b952d6SSatish Balay This code adds extra rows to make sure the number of rows is 258757b952d6SSatish Balay divisible by the blocksize 258857b952d6SSatish Balay */ 258957b952d6SSatish Balay Mbs = M/bs; 259057b952d6SSatish Balay extra_rows = bs - M + bs*(Mbs); 259157b952d6SSatish Balay if (extra_rows == bs) extra_rows = 0; 259257b952d6SSatish Balay else Mbs++; 259357b952d6SSatish Balay if (extra_rows &&!rank) { 2594b0a32e0cSBarry Smith PetscLogInfo(0,"MatLoad_MPIBAIJ:Padding loaded matrix to match blocksize\n"); 259557b952d6SSatish Balay } 2596537820f0SBarry Smith 259757b952d6SSatish Balay /* determine ownership of all rows */ 259857b952d6SSatish Balay mbs = Mbs/size + ((Mbs % size) > rank); 259957b952d6SSatish Balay m = mbs*bs; 2600*b24ad042SBarry Smith ierr = PetscMalloc(2*(size+2)*sizeof(PetscInt),&rowners);CHKERRQ(ierr); 2601*b24ad042SBarry Smith browners = (PetscMPIInt*)rowners + size + 1; 2602*b24ad042SBarry Smith ierr = MPI_Allgather(&mbs,1,MPIU_INT,rowners+1,1,MPIU_INT,comm);CHKERRQ(ierr); 260357b952d6SSatish Balay rowners[0] = 0; 2604cee3aa6bSSatish Balay for (i=2; i<=size; i++) rowners[i] += rowners[i-1]; 2605cee3aa6bSSatish Balay for (i=0; i<=size; i++) browners[i] = rowners[i]*bs; 260657b952d6SSatish Balay rstart = rowners[rank]; 260757b952d6SSatish Balay rend = rowners[rank+1]; 260857b952d6SSatish Balay 260957b952d6SSatish Balay /* distribute row lengths to all processors */ 2610*b24ad042SBarry Smith ierr = PetscMalloc((rend-rstart)*bs*sizeof(PetscInt),&locrowlens);CHKERRQ(ierr); 261157b952d6SSatish Balay if (!rank) { 2612*b24ad042SBarry Smith ierr = PetscMalloc((M+extra_rows)*sizeof(PetscInt),&rowlengths);CHKERRQ(ierr); 2613e5638eb3SBarry Smith ierr = PetscBinaryRead(fd,rowlengths,M,PETSC_INT);CHKERRQ(ierr); 261457b952d6SSatish Balay for (i=0; i<extra_rows; i++) rowlengths[M+i] = 1; 2615*b24ad042SBarry Smith ierr = PetscMalloc(size*sizeof(PetscMPIInt),&sndcounts);CHKERRQ(ierr); 2616cee3aa6bSSatish Balay for (i=0; i<size; i++) sndcounts[i] = browners[i+1] - browners[i]; 2617*b24ad042SBarry Smith ierr = MPI_Scatterv(rowlengths,sndcounts,browners,MPIU_INT,locrowlens,(rend-rstart)*bs,MPIU_INT,0,comm);CHKERRQ(ierr); 2618606d414cSSatish Balay ierr = PetscFree(sndcounts);CHKERRQ(ierr); 2619d64ed03dSBarry Smith } else { 2620*b24ad042SBarry Smith ierr = MPI_Scatterv(0,0,0,MPIU_INT,locrowlens,(rend-rstart)*bs,MPIU_INT,0,comm);CHKERRQ(ierr); 262157b952d6SSatish Balay } 262257b952d6SSatish Balay 262357b952d6SSatish Balay if (!rank) { 262457b952d6SSatish Balay /* calculate the number of nonzeros on each processor */ 2625*b24ad042SBarry Smith ierr = PetscMalloc(size*sizeof(PetscInt),&procsnz);CHKERRQ(ierr); 2626*b24ad042SBarry Smith ierr = PetscMemzero(procsnz,size*sizeof(PetscInt));CHKERRQ(ierr); 262757b952d6SSatish Balay for (i=0; i<size; i++) { 262857b952d6SSatish Balay for (j=rowners[i]*bs; j< rowners[i+1]*bs; j++) { 262957b952d6SSatish Balay procsnz[i] += rowlengths[j]; 263057b952d6SSatish Balay } 263157b952d6SSatish Balay } 2632606d414cSSatish Balay ierr = PetscFree(rowlengths);CHKERRQ(ierr); 263357b952d6SSatish Balay 263457b952d6SSatish Balay /* determine max buffer needed and allocate it */ 263557b952d6SSatish Balay maxnz = 0; 263657b952d6SSatish Balay for (i=0; i<size; i++) { 263757b952d6SSatish Balay maxnz = PetscMax(maxnz,procsnz[i]); 263857b952d6SSatish Balay } 2639*b24ad042SBarry Smith ierr = PetscMalloc(maxnz*sizeof(PetscInt),&cols);CHKERRQ(ierr); 264057b952d6SSatish Balay 264157b952d6SSatish Balay /* read in my part of the matrix column indices */ 264257b952d6SSatish Balay nz = procsnz[0]; 2643*b24ad042SBarry Smith ierr = PetscMalloc(nz*sizeof(PetscInt),&ibuf);CHKERRQ(ierr); 264457b952d6SSatish Balay mycols = ibuf; 2645cee3aa6bSSatish Balay if (size == 1) nz -= extra_rows; 2646e5638eb3SBarry Smith ierr = PetscBinaryRead(fd,mycols,nz,PETSC_INT);CHKERRQ(ierr); 2647cee3aa6bSSatish Balay if (size == 1) for (i=0; i< extra_rows; i++) { mycols[nz+i] = M+i; } 2648cee3aa6bSSatish Balay 264957b952d6SSatish Balay /* read in every ones (except the last) and ship off */ 265057b952d6SSatish Balay for (i=1; i<size-1; i++) { 265157b952d6SSatish Balay nz = procsnz[i]; 2652e5638eb3SBarry Smith ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr); 2653*b24ad042SBarry Smith ierr = MPI_Send(cols,nz,MPIU_INT,i,tag,comm);CHKERRQ(ierr); 265457b952d6SSatish Balay } 265557b952d6SSatish Balay /* read in the stuff for the last proc */ 265657b952d6SSatish Balay if (size != 1) { 265757b952d6SSatish Balay nz = procsnz[size-1] - extra_rows; /* the extra rows are not on the disk */ 2658e5638eb3SBarry Smith ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr); 265957b952d6SSatish Balay for (i=0; i<extra_rows; i++) cols[nz+i] = M+i; 2660*b24ad042SBarry Smith ierr = MPI_Send(cols,nz+extra_rows,MPIU_INT,size-1,tag,comm);CHKERRQ(ierr); 266157b952d6SSatish Balay } 2662606d414cSSatish Balay ierr = PetscFree(cols);CHKERRQ(ierr); 2663d64ed03dSBarry Smith } else { 266457b952d6SSatish Balay /* determine buffer space needed for message */ 266557b952d6SSatish Balay nz = 0; 266657b952d6SSatish Balay for (i=0; i<m; i++) { 266757b952d6SSatish Balay nz += locrowlens[i]; 266857b952d6SSatish Balay } 2669*b24ad042SBarry Smith ierr = PetscMalloc(nz*sizeof(PetscInt),&ibuf);CHKERRQ(ierr); 267057b952d6SSatish Balay mycols = ibuf; 267157b952d6SSatish Balay /* receive message of column indices*/ 2672*b24ad042SBarry Smith ierr = MPI_Recv(mycols,nz,MPIU_INT,0,tag,comm,&status);CHKERRQ(ierr); 2673*b24ad042SBarry Smith ierr = MPI_Get_count(&status,MPIU_INT,&maxnz);CHKERRQ(ierr); 267429bbc08cSBarry Smith if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 267557b952d6SSatish Balay } 267657b952d6SSatish Balay 267757b952d6SSatish Balay /* loop over local rows, determining number of off diagonal entries */ 2678*b24ad042SBarry Smith ierr = PetscMalloc(2*(rend-rstart+1)*sizeof(PetscInt),&dlens);CHKERRQ(ierr); 2679cee3aa6bSSatish Balay odlens = dlens + (rend-rstart); 2680*b24ad042SBarry Smith ierr = PetscMalloc(3*Mbs*sizeof(PetscInt),&mask);CHKERRQ(ierr); 2681*b24ad042SBarry Smith ierr = PetscMemzero(mask,3*Mbs*sizeof(PetscInt));CHKERRQ(ierr); 268257b952d6SSatish Balay masked1 = mask + Mbs; 268357b952d6SSatish Balay masked2 = masked1 + Mbs; 268457b952d6SSatish Balay rowcount = 0; nzcount = 0; 268557b952d6SSatish Balay for (i=0; i<mbs; i++) { 268657b952d6SSatish Balay dcount = 0; 268757b952d6SSatish Balay odcount = 0; 268857b952d6SSatish Balay for (j=0; j<bs; j++) { 268957b952d6SSatish Balay kmax = locrowlens[rowcount]; 269057b952d6SSatish Balay for (k=0; k<kmax; k++) { 269157b952d6SSatish Balay tmp = mycols[nzcount++]/bs; 269257b952d6SSatish Balay if (!mask[tmp]) { 269357b952d6SSatish Balay mask[tmp] = 1; 269457b952d6SSatish Balay if (tmp < rstart || tmp >= rend) masked2[odcount++] = tmp; 269557b952d6SSatish Balay else masked1[dcount++] = tmp; 269657b952d6SSatish Balay } 269757b952d6SSatish Balay } 269857b952d6SSatish Balay rowcount++; 269957b952d6SSatish Balay } 2700cee3aa6bSSatish Balay 270157b952d6SSatish Balay dlens[i] = dcount; 270257b952d6SSatish Balay odlens[i] = odcount; 2703cee3aa6bSSatish Balay 270457b952d6SSatish Balay /* zero out the mask elements we set */ 270557b952d6SSatish Balay for (j=0; j<dcount; j++) mask[masked1[j]] = 0; 270657b952d6SSatish Balay for (j=0; j<odcount; j++) mask[masked2[j]] = 0; 270757b952d6SSatish Balay } 2708cee3aa6bSSatish Balay 270957b952d6SSatish Balay /* create our matrix */ 271078ae41b4SKris Buschelman ierr = MatCreate(comm,m,m,M+extra_rows,N+extra_rows,&A);CHKERRQ(ierr); 271178ae41b4SKris Buschelman ierr = MatSetType(A,type);CHKERRQ(ierr) 271278ae41b4SKris Buschelman ierr = MatMPIBAIJSetPreallocation(A,bs,0,dlens,0,odlens);CHKERRQ(ierr); 271378ae41b4SKris Buschelman 271478ae41b4SKris Buschelman /* Why doesn't this called using ierr = MatSetOption(A,MAT_COLUMNS_SORTED);CHKERRQ(ierr); */ 27156d4a8577SBarry Smith MatSetOption(A,MAT_COLUMNS_SORTED); 271657b952d6SSatish Balay 271757b952d6SSatish Balay if (!rank) { 271887828ca2SBarry Smith ierr = PetscMalloc(maxnz*sizeof(PetscScalar),&buf);CHKERRQ(ierr); 271957b952d6SSatish Balay /* read in my part of the matrix numerical values */ 272057b952d6SSatish Balay nz = procsnz[0]; 272157b952d6SSatish Balay vals = buf; 2722cee3aa6bSSatish Balay mycols = ibuf; 2723cee3aa6bSSatish Balay if (size == 1) nz -= extra_rows; 2724e5638eb3SBarry Smith ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 2725cee3aa6bSSatish Balay if (size == 1) for (i=0; i< extra_rows; i++) { vals[nz+i] = 1.0; } 2726537820f0SBarry Smith 272757b952d6SSatish Balay /* insert into matrix */ 272857b952d6SSatish Balay jj = rstart*bs; 272957b952d6SSatish Balay for (i=0; i<m; i++) { 2730b48991e4SBarry Smith ierr = MatSetValues(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr); 273157b952d6SSatish Balay mycols += locrowlens[i]; 273257b952d6SSatish Balay vals += locrowlens[i]; 273357b952d6SSatish Balay jj++; 273457b952d6SSatish Balay } 273557b952d6SSatish Balay /* read in other processors (except the last one) and ship out */ 273657b952d6SSatish Balay for (i=1; i<size-1; i++) { 273757b952d6SSatish Balay nz = procsnz[i]; 273857b952d6SSatish Balay vals = buf; 2739e5638eb3SBarry Smith ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 2740ca161407SBarry Smith ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,A->tag,comm);CHKERRQ(ierr); 274157b952d6SSatish Balay } 274257b952d6SSatish Balay /* the last proc */ 274357b952d6SSatish Balay if (size != 1){ 274457b952d6SSatish Balay nz = procsnz[i] - extra_rows; 2745cee3aa6bSSatish Balay vals = buf; 2746e5638eb3SBarry Smith ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 274757b952d6SSatish Balay for (i=0; i<extra_rows; i++) vals[nz+i] = 1.0; 2748ca161407SBarry Smith ierr = MPI_Send(vals,nz+extra_rows,MPIU_SCALAR,size-1,A->tag,comm);CHKERRQ(ierr); 274957b952d6SSatish Balay } 2750606d414cSSatish Balay ierr = PetscFree(procsnz);CHKERRQ(ierr); 2751d64ed03dSBarry Smith } else { 275257b952d6SSatish Balay /* receive numeric values */ 275387828ca2SBarry Smith ierr = PetscMalloc(nz*sizeof(PetscScalar),&buf);CHKERRQ(ierr); 275457b952d6SSatish Balay 275557b952d6SSatish Balay /* receive message of values*/ 275657b952d6SSatish Balay vals = buf; 2757cee3aa6bSSatish Balay mycols = ibuf; 2758ca161407SBarry Smith ierr = MPI_Recv(vals,nz,MPIU_SCALAR,0,A->tag,comm,&status);CHKERRQ(ierr); 2759ca161407SBarry Smith ierr = MPI_Get_count(&status,MPIU_SCALAR,&maxnz);CHKERRQ(ierr); 276029bbc08cSBarry Smith if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 276157b952d6SSatish Balay 276257b952d6SSatish Balay /* insert into matrix */ 276357b952d6SSatish Balay jj = rstart*bs; 2764cee3aa6bSSatish Balay for (i=0; i<m; i++) { 2765b48991e4SBarry Smith ierr = MatSetValues(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr); 276657b952d6SSatish Balay mycols += locrowlens[i]; 276757b952d6SSatish Balay vals += locrowlens[i]; 276857b952d6SSatish Balay jj++; 276957b952d6SSatish Balay } 277057b952d6SSatish Balay } 2771606d414cSSatish Balay ierr = PetscFree(locrowlens);CHKERRQ(ierr); 2772606d414cSSatish Balay ierr = PetscFree(buf);CHKERRQ(ierr); 2773606d414cSSatish Balay ierr = PetscFree(ibuf);CHKERRQ(ierr); 2774606d414cSSatish Balay ierr = PetscFree(rowners);CHKERRQ(ierr); 2775606d414cSSatish Balay ierr = PetscFree(dlens);CHKERRQ(ierr); 2776606d414cSSatish Balay ierr = PetscFree(mask);CHKERRQ(ierr); 27776d4a8577SBarry Smith ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 27786d4a8577SBarry Smith ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 277978ae41b4SKris Buschelman 278078ae41b4SKris Buschelman *newmat = A; 27813a40ed3dSBarry Smith PetscFunctionReturn(0); 278257b952d6SSatish Balay } 278357b952d6SSatish Balay 27844a2ae208SSatish Balay #undef __FUNCT__ 27854a2ae208SSatish Balay #define __FUNCT__ "MatMPIBAIJSetHashTableFactor" 2786133cdb44SSatish Balay /*@ 2787133cdb44SSatish Balay MatMPIBAIJSetHashTableFactor - Sets the factor required to compute the size of the HashTable. 2788133cdb44SSatish Balay 2789133cdb44SSatish Balay Input Parameters: 2790133cdb44SSatish Balay . mat - the matrix 2791133cdb44SSatish Balay . fact - factor 2792133cdb44SSatish Balay 2793fee21e36SBarry Smith Collective on Mat 2794fee21e36SBarry Smith 27958c890885SBarry Smith Level: advanced 27968c890885SBarry Smith 2797133cdb44SSatish Balay Notes: 2798133cdb44SSatish Balay This can also be set by the command line option: -mat_use_hash_table fact 2799133cdb44SSatish Balay 2800133cdb44SSatish Balay .keywords: matrix, hashtable, factor, HT 2801133cdb44SSatish Balay 2802133cdb44SSatish Balay .seealso: MatSetOption() 2803133cdb44SSatish Balay @*/ 2804dfbe8321SBarry Smith PetscErrorCode MatMPIBAIJSetHashTableFactor(Mat mat,PetscReal fact) 2805133cdb44SSatish Balay { 2806dfbe8321SBarry Smith PetscErrorCode ierr,(*f)(Mat,PetscReal); 28075bf65638SKris Buschelman 28085bf65638SKris Buschelman PetscFunctionBegin; 28095bf65638SKris Buschelman ierr = PetscObjectQueryFunction((PetscObject)mat,"MatSetHashTableFactor_C",(void (**)(void))&f);CHKERRQ(ierr); 28105bf65638SKris Buschelman if (f) { 28115bf65638SKris Buschelman ierr = (*f)(mat,fact);CHKERRQ(ierr); 28125bf65638SKris Buschelman } 28135bf65638SKris Buschelman PetscFunctionReturn(0); 28145bf65638SKris Buschelman } 28155bf65638SKris Buschelman 28165bf65638SKris Buschelman #undef __FUNCT__ 28175bf65638SKris Buschelman #define __FUNCT__ "MatSetHashTableFactor_MPIBAIJ" 2818dfbe8321SBarry Smith PetscErrorCode MatSetHashTableFactor_MPIBAIJ(Mat mat,PetscReal fact) 28195bf65638SKris Buschelman { 282025fdafccSSatish Balay Mat_MPIBAIJ *baij; 2821133cdb44SSatish Balay 2822133cdb44SSatish Balay PetscFunctionBegin; 2823133cdb44SSatish Balay baij = (Mat_MPIBAIJ*)mat->data; 2824133cdb44SSatish Balay baij->ht_fact = fact; 2825133cdb44SSatish Balay PetscFunctionReturn(0); 2826133cdb44SSatish Balay } 2827f2a5309cSSatish Balay 28284a2ae208SSatish Balay #undef __FUNCT__ 28294a2ae208SSatish Balay #define __FUNCT__ "MatMPIBAIJGetSeqBAIJ" 2830*b24ad042SBarry Smith PetscErrorCode MatMPIBAIJGetSeqBAIJ(Mat A,Mat *Ad,Mat *Ao,PetscInt *colmap[]) 2831f2a5309cSSatish Balay { 2832f2a5309cSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 2833f2a5309cSSatish Balay PetscFunctionBegin; 2834f2a5309cSSatish Balay *Ad = a->A; 2835f2a5309cSSatish Balay *Ao = a->B; 2836195d93cdSBarry Smith *colmap = a->garray; 2837f2a5309cSSatish Balay PetscFunctionReturn(0); 2838f2a5309cSSatish Balay } 2839