1*b2863d3aSBarry Smith /*$Id: mpibaij.c,v 1.188 2000/04/09 03:09:57 bsmith Exp bsmith $*/ 279bdfe76SSatish Balay 377ed5343SBarry Smith #include "src/mat/impls/baij/mpi/mpibaij.h" /*I "mat.h" I*/ 4c16cb8f2SBarry Smith #include "src/vec/vecimpl.h" 579bdfe76SSatish Balay 657b952d6SSatish Balay extern int MatSetUpMultiply_MPIBAIJ(Mat); 757b952d6SSatish Balay extern int DisAssemble_MPIBAIJ(Mat); 8d212a18eSSatish Balay extern int MatIncreaseOverlap_MPIBAIJ(Mat,int,IS *,int); 97b2a1423SBarry Smith extern int MatGetSubMatrices_MPIBAIJ(Mat,int,IS *,IS *,MatReuse,Mat **); 10946de2abSSatish Balay extern int MatGetValues_SeqBAIJ(Mat,int,int *,int,int *,Scalar *); 11bbb85fb3SSatish Balay extern int MatSetValues_SeqBAIJ(Mat,int,int *,int,int *,Scalar *,InsertMode); 12bbb85fb3SSatish Balay extern int MatSetValuesBlocked_SeqBAIJ(Mat,int,int*,int,int*,Scalar*,InsertMode); 13bbb85fb3SSatish Balay extern int MatGetRow_SeqBAIJ(Mat,int,int*,int**,Scalar**); 14bbb85fb3SSatish Balay extern int MatRestoreRow_SeqBAIJ(Mat,int,int*,int**,Scalar**); 15bbb85fb3SSatish Balay extern int MatPrintHelp_SeqBAIJ(Mat); 163b2fbd54SBarry Smith 177fc3c18eSBarry Smith EXTERN_C_BEGIN 187fc3c18eSBarry Smith #undef __FUNC__ 19*b2863d3aSBarry Smith #define __FUNC__ /*<a name=""></a>*/"MatStoreValues_MPIBAIJ" 207fc3c18eSBarry Smith int MatStoreValues_MPIBAIJ(Mat mat) 217fc3c18eSBarry Smith { 227fc3c18eSBarry Smith Mat_MPIBAIJ *aij = (Mat_MPIBAIJ *)mat->data; 237fc3c18eSBarry Smith int ierr; 247fc3c18eSBarry Smith 257fc3c18eSBarry Smith PetscFunctionBegin; 267fc3c18eSBarry Smith ierr = MatStoreValues(aij->A);CHKERRQ(ierr); 277fc3c18eSBarry Smith ierr = MatStoreValues(aij->B);CHKERRQ(ierr); 287fc3c18eSBarry Smith PetscFunctionReturn(0); 297fc3c18eSBarry Smith } 307fc3c18eSBarry Smith EXTERN_C_END 317fc3c18eSBarry Smith 327fc3c18eSBarry Smith EXTERN_C_BEGIN 337fc3c18eSBarry Smith #undef __FUNC__ 34*b2863d3aSBarry Smith #define __FUNC__ /*<a name=""></a>*/"MatRetrieveValues_MPIBAIJ" 357fc3c18eSBarry Smith int MatRetrieveValues_MPIBAIJ(Mat mat) 367fc3c18eSBarry Smith { 377fc3c18eSBarry Smith Mat_MPIBAIJ *aij = (Mat_MPIBAIJ *)mat->data; 387fc3c18eSBarry Smith int ierr; 397fc3c18eSBarry Smith 407fc3c18eSBarry Smith PetscFunctionBegin; 417fc3c18eSBarry Smith ierr = MatRetrieveValues(aij->A);CHKERRQ(ierr); 427fc3c18eSBarry Smith ierr = MatRetrieveValues(aij->B);CHKERRQ(ierr); 437fc3c18eSBarry Smith PetscFunctionReturn(0); 447fc3c18eSBarry Smith } 457fc3c18eSBarry Smith EXTERN_C_END 467fc3c18eSBarry Smith 47537820f0SBarry Smith /* 48537820f0SBarry Smith Local utility routine that creates a mapping from the global column 4957b952d6SSatish Balay number to the local number in the off-diagonal part of the local 5057b952d6SSatish Balay storage of the matrix. This is done in a non scable way since the 5157b952d6SSatish Balay length of colmap equals the global matrix length. 5257b952d6SSatish Balay */ 535615d1e5SSatish Balay #undef __FUNC__ 54*b2863d3aSBarry Smith #define __FUNC__ /*<a name=""></a>*/"CreateColmap_MPIBAIJ_Private" 5557b952d6SSatish Balay static int CreateColmap_MPIBAIJ_Private(Mat mat) 5657b952d6SSatish Balay { 5757b952d6SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 5857b952d6SSatish Balay Mat_SeqBAIJ *B = (Mat_SeqBAIJ*)baij->B->data; 59dc2900e9SSatish Balay int nbs = B->nbs,i,bs=B->bs,ierr; 6057b952d6SSatish Balay 61d64ed03dSBarry Smith PetscFunctionBegin; 62aa482453SBarry Smith #if defined (PETSC_USE_CTABLE) 630f5bd95cSBarry Smith ierr = PetscTableCreate(baij->nbs/5,&baij->colmap);CHKERRQ(ierr); 6448e59246SSatish Balay for (i=0; i<nbs; i++){ 650f5bd95cSBarry Smith ierr = PetscTableAdd(baij->colmap,baij->garray[i]+1,i*bs+1);CHKERRQ(ierr); 6648e59246SSatish Balay } 6748e59246SSatish Balay #else 68758f045eSSatish Balay baij->colmap = (int*)PetscMalloc((baij->Nbs+1)*sizeof(int));CHKPTRQ(baij->colmap); 6957b952d6SSatish Balay PLogObjectMemory(mat,baij->Nbs*sizeof(int)); 70549d3d68SSatish Balay ierr = PetscMemzero(baij->colmap,baij->Nbs*sizeof(int));CHKERRQ(ierr); 71928fc39bSSatish Balay for (i=0; i<nbs; i++) baij->colmap[baij->garray[i]] = i*bs+1; 7248e59246SSatish Balay #endif 733a40ed3dSBarry Smith PetscFunctionReturn(0); 7457b952d6SSatish Balay } 7557b952d6SSatish Balay 7680c1aa95SSatish Balay #define CHUNKSIZE 10 7780c1aa95SSatish Balay 78f5e9677aSSatish Balay #define MatSetValues_SeqBAIJ_A_Private(row,col,value,addv) \ 7980c1aa95SSatish Balay { \ 8080c1aa95SSatish Balay \ 8180c1aa95SSatish Balay brow = row/bs; \ 8280c1aa95SSatish Balay rp = aj + ai[brow]; ap = aa + bs2*ai[brow]; \ 83ac7a638eSSatish Balay rmax = aimax[brow]; nrow = ailen[brow]; \ 8480c1aa95SSatish Balay bcol = col/bs; \ 8580c1aa95SSatish Balay ridx = row % bs; cidx = col % bs; \ 86ab26458aSBarry Smith low = 0; high = nrow; \ 87ab26458aSBarry Smith while (high-low > 3) { \ 88ab26458aSBarry Smith t = (low+high)/2; \ 89ab26458aSBarry Smith if (rp[t] > bcol) high = t; \ 90ab26458aSBarry Smith else low = t; \ 91ab26458aSBarry Smith } \ 92ab26458aSBarry Smith for (_i=low; _i<high; _i++) { \ 9380c1aa95SSatish Balay if (rp[_i] > bcol) break; \ 9480c1aa95SSatish Balay if (rp[_i] == bcol) { \ 9580c1aa95SSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 96eada6651SSatish Balay if (addv == ADD_VALUES) *bap += value; \ 97eada6651SSatish Balay else *bap = value; \ 98ac7a638eSSatish Balay goto a_noinsert; \ 9980c1aa95SSatish Balay } \ 10080c1aa95SSatish Balay } \ 10189280ab3SLois Curfman McInnes if (a->nonew == 1) goto a_noinsert; \ 102a8c6a408SBarry Smith else if (a->nonew == -1) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Inserting a new nonzero into matrix"); \ 10380c1aa95SSatish Balay if (nrow >= rmax) { \ 10480c1aa95SSatish Balay /* there is no extra room in row, therefore enlarge */ \ 10580c1aa95SSatish Balay int new_nz = ai[a->mbs] + CHUNKSIZE,len,*new_i,*new_j; \ 1063eda8832SBarry Smith MatScalar *new_a; \ 10780c1aa95SSatish Balay \ 108a8c6a408SBarry Smith if (a->nonew == -2) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Inserting a new nonzero in the matrix"); \ 10989280ab3SLois Curfman McInnes \ 11080c1aa95SSatish Balay /* malloc new storage space */ \ 1113eda8832SBarry Smith len = new_nz*(sizeof(int)+bs2*sizeof(MatScalar))+(a->mbs+1)*sizeof(int); \ 1123eda8832SBarry Smith new_a = (MatScalar*)PetscMalloc(len);CHKPTRQ(new_a); \ 11380c1aa95SSatish Balay new_j = (int*)(new_a + bs2*new_nz); \ 11480c1aa95SSatish Balay new_i = new_j + new_nz; \ 11580c1aa95SSatish Balay \ 11680c1aa95SSatish Balay /* copy over old data into new slots */ \ 11780c1aa95SSatish Balay for (ii=0; ii<brow+1; ii++) {new_i[ii] = ai[ii];} \ 11880c1aa95SSatish Balay for (ii=brow+1; ii<a->mbs+1; ii++) {new_i[ii] = ai[ii]+CHUNKSIZE;} \ 119549d3d68SSatish Balay ierr = PetscMemcpy(new_j,aj,(ai[brow]+nrow)*sizeof(int));CHKERRQ(ierr); \ 12080c1aa95SSatish Balay len = (new_nz - CHUNKSIZE - ai[brow] - nrow); \ 1213eda8832SBarry Smith ierr = PetscMemcpy(new_j+ai[brow]+nrow+CHUNKSIZE,aj+ai[brow]+nrow,len*sizeof(int));CHKERRQ(ierr); \ 1223eda8832SBarry Smith ierr = PetscMemcpy(new_a,aa,(ai[brow]+nrow)*bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 123549d3d68SSatish Balay ierr = PetscMemzero(new_a+bs2*(ai[brow]+nrow),bs2*CHUNKSIZE*sizeof(Scalar));CHKERRQ(ierr); \ 124549d3d68SSatish Balay ierr = PetscMemcpy(new_a+bs2*(ai[brow]+nrow+CHUNKSIZE), \ 1253eda8832SBarry Smith aa+bs2*(ai[brow]+nrow),bs2*len*sizeof(MatScalar));CHKERRQ(ierr); \ 12680c1aa95SSatish Balay /* free up old matrix storage */ \ 127606d414cSSatish Balay ierr = PetscFree(a->a);CHKERRQ(ierr); \ 128606d414cSSatish Balay if (!a->singlemalloc) { \ 129606d414cSSatish Balay ierr = PetscFree(a->i);CHKERRQ(ierr); \ 130606d414cSSatish Balay ierr = PetscFree(a->j);CHKERRQ(ierr);\ 131606d414cSSatish Balay } \ 13280c1aa95SSatish Balay aa = a->a = new_a; ai = a->i = new_i; aj = a->j = new_j; \ 1337c922b88SBarry Smith a->singlemalloc = PETSC_TRUE; \ 13480c1aa95SSatish Balay \ 13580c1aa95SSatish Balay rp = aj + ai[brow]; ap = aa + bs2*ai[brow]; \ 136ac7a638eSSatish Balay rmax = aimax[brow] = aimax[brow] + CHUNKSIZE; \ 1373eda8832SBarry Smith PLogObjectMemory(A,CHUNKSIZE*(sizeof(int) + bs2*sizeof(MatScalar))); \ 13880c1aa95SSatish Balay a->maxnz += bs2*CHUNKSIZE; \ 13980c1aa95SSatish Balay a->reallocs++; \ 14080c1aa95SSatish Balay a->nz++; \ 14180c1aa95SSatish Balay } \ 14280c1aa95SSatish Balay N = nrow++ - 1; \ 14380c1aa95SSatish Balay /* shift up all the later entries in this row */ \ 14480c1aa95SSatish Balay for (ii=N; ii>=_i; ii--) { \ 14580c1aa95SSatish Balay rp[ii+1] = rp[ii]; \ 1463eda8832SBarry Smith ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 14780c1aa95SSatish Balay } \ 1483eda8832SBarry Smith if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr); } \ 14980c1aa95SSatish Balay rp[_i] = bcol; \ 15080c1aa95SSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 151ac7a638eSSatish Balay a_noinsert:; \ 15280c1aa95SSatish Balay ailen[brow] = nrow; \ 15380c1aa95SSatish Balay } 15457b952d6SSatish Balay 155ac7a638eSSatish Balay #define MatSetValues_SeqBAIJ_B_Private(row,col,value,addv) \ 156ac7a638eSSatish Balay { \ 157ac7a638eSSatish Balay brow = row/bs; \ 158ac7a638eSSatish Balay rp = bj + bi[brow]; ap = ba + bs2*bi[brow]; \ 159ac7a638eSSatish Balay rmax = bimax[brow]; nrow = bilen[brow]; \ 160ac7a638eSSatish Balay bcol = col/bs; \ 161ac7a638eSSatish Balay ridx = row % bs; cidx = col % bs; \ 162ac7a638eSSatish Balay low = 0; high = nrow; \ 163ac7a638eSSatish Balay while (high-low > 3) { \ 164ac7a638eSSatish Balay t = (low+high)/2; \ 165ac7a638eSSatish Balay if (rp[t] > bcol) high = t; \ 166ac7a638eSSatish Balay else low = t; \ 167ac7a638eSSatish Balay } \ 168ac7a638eSSatish Balay for (_i=low; _i<high; _i++) { \ 169ac7a638eSSatish Balay if (rp[_i] > bcol) break; \ 170ac7a638eSSatish Balay if (rp[_i] == bcol) { \ 171ac7a638eSSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 172ac7a638eSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 173ac7a638eSSatish Balay else *bap = value; \ 174ac7a638eSSatish Balay goto b_noinsert; \ 175ac7a638eSSatish Balay } \ 176ac7a638eSSatish Balay } \ 17789280ab3SLois Curfman McInnes if (b->nonew == 1) goto b_noinsert; \ 178a8c6a408SBarry Smith else if (b->nonew == -1) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Inserting a new nonzero into matrix"); \ 179ac7a638eSSatish Balay if (nrow >= rmax) { \ 180ac7a638eSSatish Balay /* there is no extra room in row, therefore enlarge */ \ 18174c639caSSatish Balay int new_nz = bi[b->mbs] + CHUNKSIZE,len,*new_i,*new_j; \ 1823eda8832SBarry Smith MatScalar *new_a; \ 183ac7a638eSSatish Balay \ 184a8c6a408SBarry Smith if (b->nonew == -2) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Inserting a new nonzero in the matrix"); \ 18589280ab3SLois Curfman McInnes \ 186ac7a638eSSatish Balay /* malloc new storage space */ \ 1873eda8832SBarry Smith len = new_nz*(sizeof(int)+bs2*sizeof(MatScalar))+(b->mbs+1)*sizeof(int); \ 1883eda8832SBarry Smith new_a = (MatScalar*)PetscMalloc(len);CHKPTRQ(new_a); \ 189ac7a638eSSatish Balay new_j = (int*)(new_a + bs2*new_nz); \ 190ac7a638eSSatish Balay new_i = new_j + new_nz; \ 191ac7a638eSSatish Balay \ 192ac7a638eSSatish Balay /* copy over old data into new slots */ \ 193ac7a638eSSatish Balay for (ii=0; ii<brow+1; ii++) {new_i[ii] = bi[ii];} \ 19474c639caSSatish Balay for (ii=brow+1; ii<b->mbs+1; ii++) {new_i[ii] = bi[ii]+CHUNKSIZE;} \ 195549d3d68SSatish Balay ierr = PetscMemcpy(new_j,bj,(bi[brow]+nrow)*sizeof(int));CHKERRQ(ierr); \ 196ac7a638eSSatish Balay len = (new_nz - CHUNKSIZE - bi[brow] - nrow); \ 1973eda8832SBarry Smith ierr = PetscMemcpy(new_j+bi[brow]+nrow+CHUNKSIZE,bj+bi[brow]+nrow,len*sizeof(int));CHKERRQ(ierr); \ 1983eda8832SBarry Smith ierr = PetscMemcpy(new_a,ba,(bi[brow]+nrow)*bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 1993eda8832SBarry Smith ierr = PetscMemzero(new_a+bs2*(bi[brow]+nrow),bs2*CHUNKSIZE*sizeof(MatScalar));CHKERRQ(ierr); \ 200549d3d68SSatish Balay ierr = PetscMemcpy(new_a+bs2*(bi[brow]+nrow+CHUNKSIZE), \ 2013eda8832SBarry Smith ba+bs2*(bi[brow]+nrow),bs2*len*sizeof(MatScalar));CHKERRQ(ierr); \ 202ac7a638eSSatish Balay /* free up old matrix storage */ \ 203606d414cSSatish Balay ierr = PetscFree(b->a);CHKERRQ(ierr); \ 204606d414cSSatish Balay if (!b->singlemalloc) { \ 205606d414cSSatish Balay ierr = PetscFree(b->i);CHKERRQ(ierr); \ 206606d414cSSatish Balay ierr = PetscFree(b->j);CHKERRQ(ierr); \ 207606d414cSSatish Balay } \ 20874c639caSSatish Balay ba = b->a = new_a; bi = b->i = new_i; bj = b->j = new_j; \ 2097c922b88SBarry Smith b->singlemalloc = PETSC_TRUE; \ 210ac7a638eSSatish Balay \ 211ac7a638eSSatish Balay rp = bj + bi[brow]; ap = ba + bs2*bi[brow]; \ 212ac7a638eSSatish Balay rmax = bimax[brow] = bimax[brow] + CHUNKSIZE; \ 2133eda8832SBarry Smith PLogObjectMemory(B,CHUNKSIZE*(sizeof(int) + bs2*sizeof(MatScalar))); \ 21474c639caSSatish Balay b->maxnz += bs2*CHUNKSIZE; \ 21574c639caSSatish Balay b->reallocs++; \ 21674c639caSSatish Balay b->nz++; \ 217ac7a638eSSatish Balay } \ 218ac7a638eSSatish Balay N = nrow++ - 1; \ 219ac7a638eSSatish Balay /* shift up all the later entries in this row */ \ 220ac7a638eSSatish Balay for (ii=N; ii>=_i; ii--) { \ 221ac7a638eSSatish Balay rp[ii+1] = rp[ii]; \ 2223eda8832SBarry Smith ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 223ac7a638eSSatish Balay } \ 2243eda8832SBarry Smith if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr);} \ 225ac7a638eSSatish Balay rp[_i] = bcol; \ 226ac7a638eSSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 227ac7a638eSSatish Balay b_noinsert:; \ 228ac7a638eSSatish Balay bilen[brow] = nrow; \ 229ac7a638eSSatish Balay } 230ac7a638eSSatish Balay 2315615d1e5SSatish Balay #undef __FUNC__ 232*b2863d3aSBarry Smith #define __FUNC__ /*<a name=""></a>*/"MatSetValues_MPIBAIJ" 233ec1ea8d8SLois Curfman McInnes int MatSetValues_MPIBAIJ(Mat mat,int m,int *im,int n,int *in,Scalar *v,InsertMode addv) 23457b952d6SSatish Balay { 23557b952d6SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 23657b952d6SSatish Balay Scalar value; 2374fa0d573SSatish Balay int ierr,i,j,row,col; 2384fa0d573SSatish Balay int roworiented = baij->roworiented,rstart_orig=baij->rstart_bs ; 2394fa0d573SSatish Balay int rend_orig=baij->rend_bs,cstart_orig=baij->cstart_bs; 2404fa0d573SSatish Balay int cend_orig=baij->cend_bs,bs=baij->bs; 24157b952d6SSatish Balay 242eada6651SSatish Balay /* Some Variables required in the macro */ 24380c1aa95SSatish Balay Mat A = baij->A; 24480c1aa95SSatish Balay Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)(A)->data; 245ac7a638eSSatish Balay int *aimax=a->imax,*ai=a->i,*ailen=a->ilen,*aj=a->j; 2463eda8832SBarry Smith MatScalar *aa=a->a; 247ac7a638eSSatish Balay 248ac7a638eSSatish Balay Mat B = baij->B; 249ac7a638eSSatish Balay Mat_SeqBAIJ *b = (Mat_SeqBAIJ*)(B)->data; 250ac7a638eSSatish Balay int *bimax=b->imax,*bi=b->i,*bilen=b->ilen,*bj=b->j; 2513eda8832SBarry Smith MatScalar *ba=b->a; 252ac7a638eSSatish Balay 253ac7a638eSSatish Balay int *rp,ii,nrow,_i,rmax,N,brow,bcol; 254ab26458aSBarry Smith int low,high,t,ridx,cidx,bs2=a->bs2; 2553eda8832SBarry Smith MatScalar *ap,*bap; 25680c1aa95SSatish Balay 257d64ed03dSBarry Smith PetscFunctionBegin; 25857b952d6SSatish Balay for (i=0; i<m; i++) { 2595ef9f2a5SBarry Smith if (im[i] < 0) continue; 260aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g) 261a8c6a408SBarry Smith if (im[i] >= baij->M) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Row too large"); 262639f9d9dSBarry Smith #endif 26357b952d6SSatish Balay if (im[i] >= rstart_orig && im[i] < rend_orig) { 26457b952d6SSatish Balay row = im[i] - rstart_orig; 26557b952d6SSatish Balay for (j=0; j<n; j++) { 26657b952d6SSatish Balay if (in[j] >= cstart_orig && in[j] < cend_orig){ 26757b952d6SSatish Balay col = in[j] - cstart_orig; 26857b952d6SSatish Balay if (roworiented) value = v[i*n+j]; else value = v[i+j*m]; 269f5e9677aSSatish Balay MatSetValues_SeqBAIJ_A_Private(row,col,value,addv); 27080c1aa95SSatish Balay /* ierr = MatSetValues_SeqBAIJ(baij->A,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 27173959e64SBarry Smith } else if (in[j] < 0) continue; 272aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g) 273a8c6a408SBarry Smith else if (in[j] >= baij->N) {SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Col too large");} 274639f9d9dSBarry Smith #endif 27557b952d6SSatish Balay else { 27657b952d6SSatish Balay if (mat->was_assembled) { 277905e6a2fSBarry Smith if (!baij->colmap) { 278905e6a2fSBarry Smith ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 279905e6a2fSBarry Smith } 280aa482453SBarry Smith #if defined (PETSC_USE_CTABLE) 2810f5bd95cSBarry Smith ierr = PetscTableFind(baij->colmap,in[j]/bs + 1,&col);CHKERRQ(ierr); 282fa46199cSSatish Balay col = col - 1 + in[j]%bs; 28348e59246SSatish Balay #else 284905e6a2fSBarry Smith col = baij->colmap[in[j]/bs] - 1 + in[j]%bs; 28548e59246SSatish Balay #endif 28657b952d6SSatish Balay if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) { 28757b952d6SSatish Balay ierr = DisAssemble_MPIBAIJ(mat);CHKERRQ(ierr); 28857b952d6SSatish Balay col = in[j]; 2899bf004c3SSatish Balay /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */ 2909bf004c3SSatish Balay B = baij->B; 2919bf004c3SSatish Balay b = (Mat_SeqBAIJ*)(B)->data; 2929bf004c3SSatish Balay bimax=b->imax;bi=b->i;bilen=b->ilen;bj=b->j; 2939bf004c3SSatish Balay ba=b->a; 29457b952d6SSatish Balay } 295d64ed03dSBarry Smith } else col = in[j]; 29657b952d6SSatish Balay if (roworiented) value = v[i*n+j]; else value = v[i+j*m]; 297ac7a638eSSatish Balay MatSetValues_SeqBAIJ_B_Private(row,col,value,addv); 298ac7a638eSSatish Balay /* ierr = MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 29957b952d6SSatish Balay } 30057b952d6SSatish Balay } 301d64ed03dSBarry Smith } else { 30290f02eecSBarry Smith if (!baij->donotstash) { 303ff2fd236SBarry Smith if (roworiented) { 3048798bf22SSatish Balay ierr = MatStashValuesRow_Private(&mat->stash,im[i],n,in,v+i*n);CHKERRQ(ierr); 305ff2fd236SBarry Smith } else { 3068798bf22SSatish Balay ierr = MatStashValuesCol_Private(&mat->stash,im[i],n,in,v+i,m);CHKERRQ(ierr); 30757b952d6SSatish Balay } 30857b952d6SSatish Balay } 30957b952d6SSatish Balay } 31090f02eecSBarry Smith } 3113a40ed3dSBarry Smith PetscFunctionReturn(0); 31257b952d6SSatish Balay } 31357b952d6SSatish Balay 314ab26458aSBarry Smith #undef __FUNC__ 315*b2863d3aSBarry Smith #define __FUNC__ /*<a name=""></a>*/"MatSetValuesBlocked_MPIBAIJ" 316ec1ea8d8SLois Curfman McInnes int MatSetValuesBlocked_MPIBAIJ(Mat mat,int m,int *im,int n,int *in,Scalar *v,InsertMode addv) 317ab26458aSBarry Smith { 318ab26458aSBarry Smith Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 31930793edcSSatish Balay Scalar *value,*barray=baij->barray; 3207ef1d9bdSSatish Balay int ierr,i,j,ii,jj,row,col; 321ab26458aSBarry Smith int roworiented = baij->roworiented,rstart=baij->rstart ; 322ab26458aSBarry Smith int rend=baij->rend,cstart=baij->cstart,stepval; 323ab26458aSBarry Smith int cend=baij->cend,bs=baij->bs,bs2=baij->bs2; 324ab26458aSBarry Smith 325b16ae2b1SBarry Smith PetscFunctionBegin; 32630793edcSSatish Balay if(!barray) { 32747513183SBarry Smith baij->barray = barray = (Scalar*)PetscMalloc(bs2*sizeof(Scalar));CHKPTRQ(barray); 32830793edcSSatish Balay } 32930793edcSSatish Balay 330ab26458aSBarry Smith if (roworiented) { 331ab26458aSBarry Smith stepval = (n-1)*bs; 332ab26458aSBarry Smith } else { 333ab26458aSBarry Smith stepval = (m-1)*bs; 334ab26458aSBarry Smith } 335ab26458aSBarry Smith for (i=0; i<m; i++) { 3365ef9f2a5SBarry Smith if (im[i] < 0) continue; 337aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g) 3385ef9f2a5SBarry Smith if (im[i] >= baij->Mbs) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,0,"Row too large, row %d max %d",im[i],baij->Mbs); 339ab26458aSBarry Smith #endif 340ab26458aSBarry Smith if (im[i] >= rstart && im[i] < rend) { 341ab26458aSBarry Smith row = im[i] - rstart; 342ab26458aSBarry Smith for (j=0; j<n; j++) { 34315b57d14SSatish Balay /* If NumCol = 1 then a copy is not required */ 34415b57d14SSatish Balay if ((roworiented) && (n == 1)) { 34515b57d14SSatish Balay barray = v + i*bs2; 34615b57d14SSatish Balay } else if((!roworiented) && (m == 1)) { 34715b57d14SSatish Balay barray = v + j*bs2; 34815b57d14SSatish Balay } else { /* Here a copy is required */ 349ab26458aSBarry Smith if (roworiented) { 350ab26458aSBarry Smith value = v + i*(stepval+bs)*bs + j*bs; 351ab26458aSBarry Smith } else { 352ab26458aSBarry Smith value = v + j*(stepval+bs)*bs + i*bs; 353abef11f7SSatish Balay } 35447513183SBarry Smith for (ii=0; ii<bs; ii++,value+=stepval) { 35547513183SBarry Smith for (jj=0; jj<bs; jj++) { 35630793edcSSatish Balay *barray++ = *value++; 35747513183SBarry Smith } 35847513183SBarry Smith } 35930793edcSSatish Balay barray -=bs2; 36015b57d14SSatish Balay } 361abef11f7SSatish Balay 362abef11f7SSatish Balay if (in[j] >= cstart && in[j] < cend){ 363abef11f7SSatish Balay col = in[j] - cstart; 36430793edcSSatish Balay ierr = MatSetValuesBlocked_SeqBAIJ(baij->A,1,&row,1,&col,barray,addv);CHKERRQ(ierr); 365ab26458aSBarry Smith } 3665ef9f2a5SBarry Smith else if (in[j] < 0) continue; 367aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g) 3685ef9f2a5SBarry Smith else if (in[j] >= baij->Nbs) {SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,0,"Column too large, col %d max %d",in[j],baij->Nbs);} 369ab26458aSBarry Smith #endif 370ab26458aSBarry Smith else { 371ab26458aSBarry Smith if (mat->was_assembled) { 372ab26458aSBarry Smith if (!baij->colmap) { 373ab26458aSBarry Smith ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 374ab26458aSBarry Smith } 375a5eb4965SSatish Balay 376aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g) 377aa482453SBarry Smith #if defined (PETSC_USE_CTABLE) 378fa46199cSSatish Balay { int data; 3790f5bd95cSBarry Smith ierr = PetscTableFind(baij->colmap,in[j]+1,&data);CHKERRQ(ierr); 3800f5bd95cSBarry Smith if ((data - 1) % bs) SETERRQ(PETSC_ERR_PLIB,0,"Incorrect colmap"); 381fa46199cSSatish Balay } 38248e59246SSatish Balay #else 3830f5bd95cSBarry Smith if ((baij->colmap[in[j]] - 1) % bs) SETERRQ(PETSC_ERR_PLIB,0,"Incorrect colmap"); 384a5eb4965SSatish Balay #endif 38548e59246SSatish Balay #endif 386aa482453SBarry Smith #if defined (PETSC_USE_CTABLE) 3870f5bd95cSBarry Smith ierr = PetscTableFind(baij->colmap,in[j]+1,&col);CHKERRQ(ierr); 388fa46199cSSatish Balay col = (col - 1)/bs; 38948e59246SSatish Balay #else 390a5eb4965SSatish Balay col = (baij->colmap[in[j]] - 1)/bs; 39148e59246SSatish Balay #endif 392ab26458aSBarry Smith if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) { 393ab26458aSBarry Smith ierr = DisAssemble_MPIBAIJ(mat);CHKERRQ(ierr); 394ab26458aSBarry Smith col = in[j]; 395ab26458aSBarry Smith } 396ab26458aSBarry Smith } 397ab26458aSBarry Smith else col = in[j]; 39830793edcSSatish Balay ierr = MatSetValuesBlocked_SeqBAIJ(baij->B,1,&row,1,&col,barray,addv);CHKERRQ(ierr); 399ab26458aSBarry Smith } 400ab26458aSBarry Smith } 401d64ed03dSBarry Smith } else { 402ab26458aSBarry Smith if (!baij->donotstash) { 403ff2fd236SBarry Smith if (roworiented) { 4048798bf22SSatish Balay ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 405ff2fd236SBarry Smith } else { 4068798bf22SSatish Balay ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 407ff2fd236SBarry Smith } 408abef11f7SSatish Balay } 409ab26458aSBarry Smith } 410ab26458aSBarry Smith } 4113a40ed3dSBarry Smith PetscFunctionReturn(0); 412ab26458aSBarry Smith } 4130bdbc534SSatish Balay #define HASH_KEY 0.6180339887 414c2760754SSatish Balay /* #define HASH1(size,key) ((int)((size)*fmod(((key)*HASH_KEY),1))) */ 415c2760754SSatish Balay #define HASH(size,key,tmp) (tmp = (key)*HASH_KEY,(int)((size)*(tmp-(int)tmp))) 416c2760754SSatish Balay /* #define HASH(size,key,tmp) ((int)((size)*fmod(((key)*HASH_KEY),1))) */ 4175615d1e5SSatish Balay #undef __FUNC__ 418*b2863d3aSBarry Smith #define __FUNC__ /*<a name=""></a>*/"MatSetValues_MPIBAIJ_HT" 4190bdbc534SSatish Balay int MatSetValues_MPIBAIJ_HT(Mat mat,int m,int *im,int n,int *in,Scalar *v,InsertMode addv) 4200bdbc534SSatish Balay { 4210bdbc534SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 4220bdbc534SSatish Balay int ierr,i,j,row,col; 4230bdbc534SSatish Balay int roworiented = baij->roworiented,rstart_orig=baij->rstart_bs ; 424c2760754SSatish Balay int rend_orig=baij->rend_bs,Nbs=baij->Nbs; 425c2760754SSatish Balay int h1,key,size=baij->ht_size,bs=baij->bs,*HT=baij->ht,idx; 426329f5518SBarry Smith PetscReal tmp; 4273eda8832SBarry Smith MatScalar ** HD = baij->hd,value; 428aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g) 4294a15367fSSatish Balay int total_ct=baij->ht_total_ct,insert_ct=baij->ht_insert_ct; 4304a15367fSSatish Balay #endif 4310bdbc534SSatish Balay 4320bdbc534SSatish Balay PetscFunctionBegin; 4330bdbc534SSatish Balay 4340bdbc534SSatish Balay for (i=0; i<m; i++) { 435aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g) 4360bdbc534SSatish Balay if (im[i] < 0) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Negative row"); 4370bdbc534SSatish Balay if (im[i] >= baij->M) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Row too large"); 4380bdbc534SSatish Balay #endif 4390bdbc534SSatish Balay row = im[i]; 440c2760754SSatish Balay if (row >= rstart_orig && row < rend_orig) { 4410bdbc534SSatish Balay for (j=0; j<n; j++) { 4420bdbc534SSatish Balay col = in[j]; 4433eda8832SBarry Smith if (roworiented) value = (MatScalar)v[i*n+j]; else value = (MatScalar)v[i+j*m]; 4440bdbc534SSatish Balay /* Look up into the Hash Table */ 445c2760754SSatish Balay key = (row/bs)*Nbs+(col/bs)+1; 446c2760754SSatish Balay h1 = HASH(size,key,tmp); 4470bdbc534SSatish Balay 448c2760754SSatish Balay 449c2760754SSatish Balay idx = h1; 450aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g) 451187ce0cbSSatish Balay insert_ct++; 452187ce0cbSSatish Balay total_ct++; 453187ce0cbSSatish Balay if (HT[idx] != key) { 454187ce0cbSSatish Balay for (idx=h1; (idx<size) && (HT[idx]!=key); idx++,total_ct++); 455187ce0cbSSatish Balay if (idx == size) { 456187ce0cbSSatish Balay for (idx=0; (idx<h1) && (HT[idx]!=key); idx++,total_ct++); 457187ce0cbSSatish Balay if (idx == h1) { 458187ce0cbSSatish Balay SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"(row,col) has no entry in the hash table"); 459187ce0cbSSatish Balay } 460187ce0cbSSatish Balay } 461187ce0cbSSatish Balay } 462187ce0cbSSatish Balay #else 463c2760754SSatish Balay if (HT[idx] != key) { 464c2760754SSatish Balay for (idx=h1; (idx<size) && (HT[idx]!=key); idx++); 465c2760754SSatish Balay if (idx == size) { 466c2760754SSatish Balay for (idx=0; (idx<h1) && (HT[idx]!=key); idx++); 467c2760754SSatish Balay if (idx == h1) { 468c2760754SSatish Balay SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"(row,col) has no entry in the hash table"); 469c2760754SSatish Balay } 470c2760754SSatish Balay } 471c2760754SSatish Balay } 472187ce0cbSSatish Balay #endif 473c2760754SSatish Balay /* A HASH table entry is found, so insert the values at the correct address */ 474c2760754SSatish Balay if (addv == ADD_VALUES) *(HD[idx]+ (col % bs)*bs + (row % bs)) += value; 475c2760754SSatish Balay else *(HD[idx]+ (col % bs)*bs + (row % bs)) = value; 4760bdbc534SSatish Balay } 4770bdbc534SSatish Balay } else { 4780bdbc534SSatish Balay if (!baij->donotstash) { 479ff2fd236SBarry Smith if (roworiented) { 4808798bf22SSatish Balay ierr = MatStashValuesRow_Private(&mat->stash,im[i],n,in,v+i*n);CHKERRQ(ierr); 481ff2fd236SBarry Smith } else { 4828798bf22SSatish Balay ierr = MatStashValuesCol_Private(&mat->stash,im[i],n,in,v+i,m);CHKERRQ(ierr); 4830bdbc534SSatish Balay } 4840bdbc534SSatish Balay } 4850bdbc534SSatish Balay } 4860bdbc534SSatish Balay } 487aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g) 488187ce0cbSSatish Balay baij->ht_total_ct = total_ct; 489187ce0cbSSatish Balay baij->ht_insert_ct = insert_ct; 490187ce0cbSSatish Balay #endif 4910bdbc534SSatish Balay PetscFunctionReturn(0); 4920bdbc534SSatish Balay } 4930bdbc534SSatish Balay 4940bdbc534SSatish Balay #undef __FUNC__ 495*b2863d3aSBarry Smith #define __FUNC__ /*<a name=""></a>*/"MatSetValuesBlocked_MPIBAIJ_HT" 4960bdbc534SSatish Balay int MatSetValuesBlocked_MPIBAIJ_HT(Mat mat,int m,int *im,int n,int *in,Scalar *v,InsertMode addv) 4970bdbc534SSatish Balay { 4980bdbc534SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 4998798bf22SSatish Balay int ierr,i,j,ii,jj,row,col; 5000bdbc534SSatish Balay int roworiented = baij->roworiented,rstart=baij->rstart ; 501b4cc0f5aSSatish Balay int rend=baij->rend,stepval,bs=baij->bs,bs2=baij->bs2; 502c2760754SSatish Balay int h1,key,size=baij->ht_size,idx,*HT=baij->ht,Nbs=baij->Nbs; 503329f5518SBarry Smith PetscReal tmp; 5043eda8832SBarry Smith MatScalar **HD = baij->hd,*baij_a; 5053eda8832SBarry Smith Scalar *v_t,*value; 506aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g) 5074a15367fSSatish Balay int total_ct=baij->ht_total_ct,insert_ct=baij->ht_insert_ct; 5084a15367fSSatish Balay #endif 5090bdbc534SSatish Balay 510d0a41580SSatish Balay PetscFunctionBegin; 511d0a41580SSatish Balay 5120bdbc534SSatish Balay if (roworiented) { 5130bdbc534SSatish Balay stepval = (n-1)*bs; 5140bdbc534SSatish Balay } else { 5150bdbc534SSatish Balay stepval = (m-1)*bs; 5160bdbc534SSatish Balay } 5170bdbc534SSatish Balay for (i=0; i<m; i++) { 518aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g) 5190bdbc534SSatish Balay if (im[i] < 0) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Negative row"); 5200bdbc534SSatish Balay if (im[i] >= baij->Mbs) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Row too large"); 5210bdbc534SSatish Balay #endif 5220bdbc534SSatish Balay row = im[i]; 523187ce0cbSSatish Balay v_t = v + i*bs2; 524c2760754SSatish Balay if (row >= rstart && row < rend) { 5250bdbc534SSatish Balay for (j=0; j<n; j++) { 5260bdbc534SSatish Balay col = in[j]; 5270bdbc534SSatish Balay 5280bdbc534SSatish Balay /* Look up into the Hash Table */ 529c2760754SSatish Balay key = row*Nbs+col+1; 530c2760754SSatish Balay h1 = HASH(size,key,tmp); 5310bdbc534SSatish Balay 532c2760754SSatish Balay idx = h1; 533aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g) 534187ce0cbSSatish Balay total_ct++; 535187ce0cbSSatish Balay insert_ct++; 536187ce0cbSSatish Balay if (HT[idx] != key) { 537187ce0cbSSatish Balay for (idx=h1; (idx<size) && (HT[idx]!=key); idx++,total_ct++); 538187ce0cbSSatish Balay if (idx == size) { 539187ce0cbSSatish Balay for (idx=0; (idx<h1) && (HT[idx]!=key); idx++,total_ct++); 540187ce0cbSSatish Balay if (idx == h1) { 541187ce0cbSSatish Balay SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"(row,col) has no entry in the hash table"); 542187ce0cbSSatish Balay } 543187ce0cbSSatish Balay } 544187ce0cbSSatish Balay } 545187ce0cbSSatish Balay #else 546c2760754SSatish Balay if (HT[idx] != key) { 547c2760754SSatish Balay for (idx=h1; (idx<size) && (HT[idx]!=key); idx++); 548c2760754SSatish Balay if (idx == size) { 549c2760754SSatish Balay for (idx=0; (idx<h1) && (HT[idx]!=key); idx++); 550c2760754SSatish Balay if (idx == h1) { 551c2760754SSatish Balay SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"(row,col) has no entry in the hash table"); 552c2760754SSatish Balay } 553c2760754SSatish Balay } 554c2760754SSatish Balay } 555187ce0cbSSatish Balay #endif 556c2760754SSatish Balay baij_a = HD[idx]; 5570bdbc534SSatish Balay if (roworiented) { 558c2760754SSatish Balay /*value = v + i*(stepval+bs)*bs + j*bs;*/ 559187ce0cbSSatish Balay /* value = v + (i*(stepval+bs)+j)*bs; */ 560187ce0cbSSatish Balay value = v_t; 561187ce0cbSSatish Balay v_t += bs; 562fef45726SSatish Balay if (addv == ADD_VALUES) { 563c2760754SSatish Balay for (ii=0; ii<bs; ii++,value+=stepval) { 564c2760754SSatish Balay for (jj=ii; jj<bs2; jj+=bs) { 565fef45726SSatish Balay baij_a[jj] += *value++; 566b4cc0f5aSSatish Balay } 567b4cc0f5aSSatish Balay } 568fef45726SSatish Balay } else { 569c2760754SSatish Balay for (ii=0; ii<bs; ii++,value+=stepval) { 570c2760754SSatish Balay for (jj=ii; jj<bs2; jj+=bs) { 571fef45726SSatish Balay baij_a[jj] = *value++; 572fef45726SSatish Balay } 573fef45726SSatish Balay } 574fef45726SSatish Balay } 5750bdbc534SSatish Balay } else { 5760bdbc534SSatish Balay value = v + j*(stepval+bs)*bs + i*bs; 577fef45726SSatish Balay if (addv == ADD_VALUES) { 578b4cc0f5aSSatish Balay for (ii=0; ii<bs; ii++,value+=stepval,baij_a+=bs) { 5790bdbc534SSatish Balay for (jj=0; jj<bs; jj++) { 580fef45726SSatish Balay baij_a[jj] += *value++; 581fef45726SSatish Balay } 582fef45726SSatish Balay } 583fef45726SSatish Balay } else { 584fef45726SSatish Balay for (ii=0; ii<bs; ii++,value+=stepval,baij_a+=bs) { 585fef45726SSatish Balay for (jj=0; jj<bs; jj++) { 586fef45726SSatish Balay baij_a[jj] = *value++; 587fef45726SSatish Balay } 588b4cc0f5aSSatish Balay } 5890bdbc534SSatish Balay } 5900bdbc534SSatish Balay } 5910bdbc534SSatish Balay } 5920bdbc534SSatish Balay } else { 5930bdbc534SSatish Balay if (!baij->donotstash) { 5940bdbc534SSatish Balay if (roworiented) { 5958798bf22SSatish Balay ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 5960bdbc534SSatish Balay } else { 5978798bf22SSatish Balay ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 5980bdbc534SSatish Balay } 5990bdbc534SSatish Balay } 6000bdbc534SSatish Balay } 6010bdbc534SSatish Balay } 602aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g) 603187ce0cbSSatish Balay baij->ht_total_ct = total_ct; 604187ce0cbSSatish Balay baij->ht_insert_ct = insert_ct; 605187ce0cbSSatish Balay #endif 6060bdbc534SSatish Balay PetscFunctionReturn(0); 6070bdbc534SSatish Balay } 608133cdb44SSatish Balay 6090bdbc534SSatish Balay #undef __FUNC__ 610*b2863d3aSBarry Smith #define __FUNC__ /*<a name=""></a>*/"MatGetValues_MPIBAIJ" 611ec1ea8d8SLois Curfman McInnes int MatGetValues_MPIBAIJ(Mat mat,int m,int *idxm,int n,int *idxn,Scalar *v) 612d6de1c52SSatish Balay { 613d6de1c52SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 614d6de1c52SSatish Balay int bs=baij->bs,ierr,i,j,bsrstart = baij->rstart*bs,bsrend = baij->rend*bs; 61548e59246SSatish Balay int bscstart = baij->cstart*bs,bscend = baij->cend*bs,row,col,data; 616d6de1c52SSatish Balay 617133cdb44SSatish Balay PetscFunctionBegin; 618d6de1c52SSatish Balay for (i=0; i<m; i++) { 619a8c6a408SBarry Smith if (idxm[i] < 0) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Negative row"); 620a8c6a408SBarry Smith if (idxm[i] >= baij->M) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Row too large"); 621d6de1c52SSatish Balay if (idxm[i] >= bsrstart && idxm[i] < bsrend) { 622d6de1c52SSatish Balay row = idxm[i] - bsrstart; 623d6de1c52SSatish Balay for (j=0; j<n; j++) { 624a8c6a408SBarry Smith if (idxn[j] < 0) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Negative column"); 625a8c6a408SBarry Smith if (idxn[j] >= baij->N) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Column too large"); 626d6de1c52SSatish Balay if (idxn[j] >= bscstart && idxn[j] < bscend){ 627d6de1c52SSatish Balay col = idxn[j] - bscstart; 62898dd23e9SBarry Smith ierr = MatGetValues_SeqBAIJ(baij->A,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr); 629d64ed03dSBarry Smith } else { 630905e6a2fSBarry Smith if (!baij->colmap) { 631905e6a2fSBarry Smith ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 632905e6a2fSBarry Smith } 633aa482453SBarry Smith #if defined (PETSC_USE_CTABLE) 6340f5bd95cSBarry Smith ierr = PetscTableFind(baij->colmap,idxn[j]/bs+1,&data);CHKERRQ(ierr); 635fa46199cSSatish Balay data --; 63648e59246SSatish Balay #else 63748e59246SSatish Balay data = baij->colmap[idxn[j]/bs]-1; 63848e59246SSatish Balay #endif 63948e59246SSatish Balay if((data < 0) || (baij->garray[data/bs] != idxn[j]/bs)) *(v+i*n+j) = 0.0; 640d9d09a02SSatish Balay else { 64148e59246SSatish Balay col = data + idxn[j]%bs; 64298dd23e9SBarry Smith ierr = MatGetValues_SeqBAIJ(baij->B,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr); 643d6de1c52SSatish Balay } 644d6de1c52SSatish Balay } 645d6de1c52SSatish Balay } 646d64ed03dSBarry Smith } else { 647a8c6a408SBarry Smith SETERRQ(PETSC_ERR_SUP,0,"Only local values currently supported"); 648d6de1c52SSatish Balay } 649d6de1c52SSatish Balay } 6503a40ed3dSBarry Smith PetscFunctionReturn(0); 651d6de1c52SSatish Balay } 652d6de1c52SSatish Balay 6535615d1e5SSatish Balay #undef __FUNC__ 654*b2863d3aSBarry Smith #define __FUNC__ /*<a name=""></a>*/"MatNorm_MPIBAIJ" 655329f5518SBarry Smith int MatNorm_MPIBAIJ(Mat mat,NormType type,PetscReal *norm) 656d6de1c52SSatish Balay { 657d6de1c52SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 658d6de1c52SSatish Balay Mat_SeqBAIJ *amat = (Mat_SeqBAIJ*)baij->A->data,*bmat = (Mat_SeqBAIJ*)baij->B->data; 659acdf5bf4SSatish Balay int ierr,i,bs2=baij->bs2; 660329f5518SBarry Smith PetscReal sum = 0.0; 6613eda8832SBarry Smith MatScalar *v; 662d6de1c52SSatish Balay 663d64ed03dSBarry Smith PetscFunctionBegin; 664d6de1c52SSatish Balay if (baij->size == 1) { 665d6de1c52SSatish Balay ierr = MatNorm(baij->A,type,norm);CHKERRQ(ierr); 666d6de1c52SSatish Balay } else { 667d6de1c52SSatish Balay if (type == NORM_FROBENIUS) { 668d6de1c52SSatish Balay v = amat->a; 669d6de1c52SSatish Balay for (i=0; i<amat->nz*bs2; i++) { 670aa482453SBarry Smith #if defined(PETSC_USE_COMPLEX) 671329f5518SBarry Smith sum += PetscRealPart(PetscConj(*v)*(*v)); v++; 672d6de1c52SSatish Balay #else 673d6de1c52SSatish Balay sum += (*v)*(*v); v++; 674d6de1c52SSatish Balay #endif 675d6de1c52SSatish Balay } 676d6de1c52SSatish Balay v = bmat->a; 677d6de1c52SSatish Balay for (i=0; i<bmat->nz*bs2; i++) { 678aa482453SBarry Smith #if defined(PETSC_USE_COMPLEX) 679329f5518SBarry Smith sum += PetscRealPart(PetscConj(*v)*(*v)); v++; 680d6de1c52SSatish Balay #else 681d6de1c52SSatish Balay sum += (*v)*(*v); v++; 682d6de1c52SSatish Balay #endif 683d6de1c52SSatish Balay } 684ca161407SBarry Smith ierr = MPI_Allreduce(&sum,norm,1,MPI_DOUBLE,MPI_SUM,mat->comm);CHKERRQ(ierr); 685d6de1c52SSatish Balay *norm = sqrt(*norm); 686d64ed03dSBarry Smith } else { 687e3372554SBarry Smith SETERRQ(PETSC_ERR_SUP,0,"No support for this norm yet"); 688d6de1c52SSatish Balay } 689d64ed03dSBarry Smith } 6903a40ed3dSBarry Smith PetscFunctionReturn(0); 691d6de1c52SSatish Balay } 69257b952d6SSatish Balay 693bd7f49f5SSatish Balay 694fef45726SSatish Balay /* 695fef45726SSatish Balay Creates the hash table, and sets the table 696fef45726SSatish Balay This table is created only once. 697fef45726SSatish Balay If new entried need to be added to the matrix 698fef45726SSatish Balay then the hash table has to be destroyed and 699fef45726SSatish Balay recreated. 700fef45726SSatish Balay */ 701fef45726SSatish Balay #undef __FUNC__ 702*b2863d3aSBarry Smith #define __FUNC__ /*<a name=""></a>*/"MatCreateHashTable_MPIBAIJ_Private" 703329f5518SBarry Smith int MatCreateHashTable_MPIBAIJ_Private(Mat mat,PetscReal factor) 704596b8d2eSBarry Smith { 705596b8d2eSBarry Smith Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 706596b8d2eSBarry Smith Mat A = baij->A,B=baij->B; 707596b8d2eSBarry Smith Mat_SeqBAIJ *a=(Mat_SeqBAIJ *)A->data,*b=(Mat_SeqBAIJ *)B->data; 7080bdbc534SSatish Balay int i,j,k,nz=a->nz+b->nz,h1,*ai=a->i,*aj=a->j,*bi=b->i,*bj=b->j; 709549d3d68SSatish Balay int size,bs2=baij->bs2,rstart=baij->rstart,ierr; 710187ce0cbSSatish Balay int cstart=baij->cstart,*garray=baij->garray,row,col,Nbs=baij->Nbs; 711fef45726SSatish Balay int *HT,key; 7123eda8832SBarry Smith MatScalar **HD; 713329f5518SBarry Smith PetscReal tmp; 714aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g) 7154a15367fSSatish Balay int ct=0,max=0; 7164a15367fSSatish Balay #endif 717fef45726SSatish Balay 718d64ed03dSBarry Smith PetscFunctionBegin; 7190bdbc534SSatish Balay baij->ht_size=(int)(factor*nz); 7200bdbc534SSatish Balay size = baij->ht_size; 721fef45726SSatish Balay 7220bdbc534SSatish Balay if (baij->ht) { 7230bdbc534SSatish Balay PetscFunctionReturn(0); 724596b8d2eSBarry Smith } 7250bdbc534SSatish Balay 726fef45726SSatish Balay /* Allocate Memory for Hash Table */ 7273eda8832SBarry Smith baij->hd = (MatScalar**)PetscMalloc((size)*(sizeof(int)+sizeof(MatScalar*))+1);CHKPTRQ(baij->hd); 728b9e4cc15SSatish Balay baij->ht = (int*)(baij->hd + size); 729b9e4cc15SSatish Balay HD = baij->hd; 730a07cd24cSSatish Balay HT = baij->ht; 731b9e4cc15SSatish Balay 732b9e4cc15SSatish Balay 733549d3d68SSatish Balay ierr = PetscMemzero(HD,size*(sizeof(int)+sizeof(Scalar*)));CHKERRQ(ierr); 7340bdbc534SSatish Balay 735596b8d2eSBarry Smith 736596b8d2eSBarry Smith /* Loop Over A */ 7370bdbc534SSatish Balay for (i=0; i<a->mbs; i++) { 738596b8d2eSBarry Smith for (j=ai[i]; j<ai[i+1]; j++) { 7390bdbc534SSatish Balay row = i+rstart; 7400bdbc534SSatish Balay col = aj[j]+cstart; 741596b8d2eSBarry Smith 742187ce0cbSSatish Balay key = row*Nbs + col + 1; 743c2760754SSatish Balay h1 = HASH(size,key,tmp); 7440bdbc534SSatish Balay for (k=0; k<size; k++){ 7450bdbc534SSatish Balay if (HT[(h1+k)%size] == 0.0) { 7460bdbc534SSatish Balay HT[(h1+k)%size] = key; 7470bdbc534SSatish Balay HD[(h1+k)%size] = a->a + j*bs2; 748596b8d2eSBarry Smith break; 749aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g) 750187ce0cbSSatish Balay } else { 751187ce0cbSSatish Balay ct++; 752187ce0cbSSatish Balay #endif 753596b8d2eSBarry Smith } 754187ce0cbSSatish Balay } 755aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g) 756187ce0cbSSatish Balay if (k> max) max = k; 757187ce0cbSSatish Balay #endif 758596b8d2eSBarry Smith } 759596b8d2eSBarry Smith } 760596b8d2eSBarry Smith /* Loop Over B */ 7610bdbc534SSatish Balay for (i=0; i<b->mbs; i++) { 762596b8d2eSBarry Smith for (j=bi[i]; j<bi[i+1]; j++) { 7630bdbc534SSatish Balay row = i+rstart; 7640bdbc534SSatish Balay col = garray[bj[j]]; 765187ce0cbSSatish Balay key = row*Nbs + col + 1; 766c2760754SSatish Balay h1 = HASH(size,key,tmp); 7670bdbc534SSatish Balay for (k=0; k<size; k++){ 7680bdbc534SSatish Balay if (HT[(h1+k)%size] == 0.0) { 7690bdbc534SSatish Balay HT[(h1+k)%size] = key; 7700bdbc534SSatish Balay HD[(h1+k)%size] = b->a + j*bs2; 771596b8d2eSBarry Smith break; 772aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g) 773187ce0cbSSatish Balay } else { 774187ce0cbSSatish Balay ct++; 775187ce0cbSSatish Balay #endif 776596b8d2eSBarry Smith } 777187ce0cbSSatish Balay } 778aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g) 779187ce0cbSSatish Balay if (k> max) max = k; 780187ce0cbSSatish Balay #endif 781596b8d2eSBarry Smith } 782596b8d2eSBarry Smith } 783596b8d2eSBarry Smith 784596b8d2eSBarry Smith /* Print Summary */ 785aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g) 786c38d4ed2SBarry Smith for (i=0,j=0; i<size; i++) { 787596b8d2eSBarry Smith if (HT[i]) {j++;} 788c38d4ed2SBarry Smith } 789329f5518SBarry Smith PLogInfo(0,"MatCreateHashTable_MPIBAIJ_Private: Average Search = %5.2f,max search = %d\n",(j== 0)? 0.0:((PetscReal)(ct+j))/j,max); 790187ce0cbSSatish Balay #endif 7913a40ed3dSBarry Smith PetscFunctionReturn(0); 792596b8d2eSBarry Smith } 79357b952d6SSatish Balay 794bbb85fb3SSatish Balay #undef __FUNC__ 795*b2863d3aSBarry Smith #define __FUNC__ /*<a name=""></a>*/"MatAssemblyBegin_MPIBAIJ" 796bbb85fb3SSatish Balay int MatAssemblyBegin_MPIBAIJ(Mat mat,MatAssemblyType mode) 797bbb85fb3SSatish Balay { 798bbb85fb3SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 799ff2fd236SBarry Smith int ierr,nstash,reallocs; 800bbb85fb3SSatish Balay InsertMode addv; 801bbb85fb3SSatish Balay 802bbb85fb3SSatish Balay PetscFunctionBegin; 803bbb85fb3SSatish Balay if (baij->donotstash) { 804bbb85fb3SSatish Balay PetscFunctionReturn(0); 805bbb85fb3SSatish Balay } 806bbb85fb3SSatish Balay 807bbb85fb3SSatish Balay /* make sure all processors are either in INSERTMODE or ADDMODE */ 808bbb85fb3SSatish Balay ierr = MPI_Allreduce(&mat->insertmode,&addv,1,MPI_INT,MPI_BOR,mat->comm);CHKERRQ(ierr); 809bbb85fb3SSatish Balay if (addv == (ADD_VALUES|INSERT_VALUES)) { 810bbb85fb3SSatish Balay SETERRQ(PETSC_ERR_ARG_WRONGSTATE,0,"Some processors inserted others added"); 811bbb85fb3SSatish Balay } 812bbb85fb3SSatish Balay mat->insertmode = addv; /* in case this processor had no cache */ 813bbb85fb3SSatish Balay 8148798bf22SSatish Balay ierr = MatStashScatterBegin_Private(&mat->stash,baij->rowners_bs);CHKERRQ(ierr); 8158798bf22SSatish Balay ierr = MatStashScatterBegin_Private(&mat->bstash,baij->rowners);CHKERRQ(ierr); 8168798bf22SSatish Balay ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr); 8175a655dc6SBarry Smith PLogInfo(0,"MatAssemblyBegin_MPIBAIJ:Stash has %d entries,uses %d mallocs.\n",nstash,reallocs); 8188798bf22SSatish Balay ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr); 8195a655dc6SBarry Smith PLogInfo(0,"MatAssemblyBegin_MPIBAIJ:Block-Stash has %d entries, uses %d mallocs.\n",nstash,reallocs); 820bbb85fb3SSatish Balay PetscFunctionReturn(0); 821bbb85fb3SSatish Balay } 822bbb85fb3SSatish Balay 823bbb85fb3SSatish Balay #undef __FUNC__ 824*b2863d3aSBarry Smith #define __FUNC__ /*<a name=""></a>*/"MatAssemblyEnd_MPIBAIJ" 825bbb85fb3SSatish Balay int MatAssemblyEnd_MPIBAIJ(Mat mat,MatAssemblyType mode) 826bbb85fb3SSatish Balay { 827bbb85fb3SSatish Balay Mat_MPIBAIJ *baij=(Mat_MPIBAIJ*)mat->data; 828a2d1c673SSatish Balay Mat_SeqBAIJ *a=(Mat_SeqBAIJ*)baij->A->data,*b=(Mat_SeqBAIJ*)baij->B->data; 829a2d1c673SSatish Balay int i,j,rstart,ncols,n,ierr,flg,bs2=baij->bs2; 8307c922b88SBarry Smith int *row,*col,other_disassembled; 8317c922b88SBarry Smith PetscTruth r1,r2,r3; 8323eda8832SBarry Smith MatScalar *val; 833bbb85fb3SSatish Balay InsertMode addv = mat->insertmode; 834bbb85fb3SSatish Balay 835bbb85fb3SSatish Balay PetscFunctionBegin; 836bbb85fb3SSatish Balay if (!baij->donotstash) { 837a2d1c673SSatish Balay while (1) { 8388798bf22SSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 839a2d1c673SSatish Balay if (!flg) break; 840a2d1c673SSatish Balay 841bbb85fb3SSatish Balay for (i=0; i<n;) { 842bbb85fb3SSatish Balay /* Now identify the consecutive vals belonging to the same row */ 843bbb85fb3SSatish Balay for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; } 844bbb85fb3SSatish Balay if (j < n) ncols = j-i; 845bbb85fb3SSatish Balay else ncols = n-i; 846bbb85fb3SSatish Balay /* Now assemble all these values with a single function call */ 847bbb85fb3SSatish Balay ierr = MatSetValues_MPIBAIJ(mat,1,row+i,ncols,col+i,val+i,addv);CHKERRQ(ierr); 848bbb85fb3SSatish Balay i = j; 849bbb85fb3SSatish Balay } 850bbb85fb3SSatish Balay } 8518798bf22SSatish Balay ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr); 852a2d1c673SSatish Balay /* Now process the block-stash. Since the values are stashed column-oriented, 853a2d1c673SSatish Balay set the roworiented flag to column oriented, and after MatSetValues() 854a2d1c673SSatish Balay restore the original flags */ 855a2d1c673SSatish Balay r1 = baij->roworiented; 856a2d1c673SSatish Balay r2 = a->roworiented; 857a2d1c673SSatish Balay r3 = b->roworiented; 8587c922b88SBarry Smith baij->roworiented = PETSC_FALSE; 8597c922b88SBarry Smith a->roworiented = PETSC_FALSE; 8607c922b88SBarry Smith b->roworiented = PETSC_FALSE; 861a2d1c673SSatish Balay while (1) { 8628798bf22SSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->bstash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 863a2d1c673SSatish Balay if (!flg) break; 864a2d1c673SSatish Balay 865a2d1c673SSatish Balay for (i=0; i<n;) { 866a2d1c673SSatish Balay /* Now identify the consecutive vals belonging to the same row */ 867a2d1c673SSatish Balay for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; } 868a2d1c673SSatish Balay if (j < n) ncols = j-i; 869a2d1c673SSatish Balay else ncols = n-i; 870a2d1c673SSatish Balay ierr = MatSetValuesBlocked_MPIBAIJ(mat,1,row+i,ncols,col+i,val+i*bs2,addv);CHKERRQ(ierr); 871a2d1c673SSatish Balay i = j; 872a2d1c673SSatish Balay } 873a2d1c673SSatish Balay } 8748798bf22SSatish Balay ierr = MatStashScatterEnd_Private(&mat->bstash);CHKERRQ(ierr); 875a2d1c673SSatish Balay baij->roworiented = r1; 876a2d1c673SSatish Balay a->roworiented = r2; 877a2d1c673SSatish Balay b->roworiented = r3; 878bbb85fb3SSatish Balay } 879bbb85fb3SSatish Balay 880bbb85fb3SSatish Balay ierr = MatAssemblyBegin(baij->A,mode);CHKERRQ(ierr); 881bbb85fb3SSatish Balay ierr = MatAssemblyEnd(baij->A,mode);CHKERRQ(ierr); 882bbb85fb3SSatish Balay 883bbb85fb3SSatish Balay /* determine if any processor has disassembled, if so we must 884bbb85fb3SSatish Balay also disassemble ourselfs, in order that we may reassemble. */ 885bbb85fb3SSatish Balay /* 886bbb85fb3SSatish Balay if nonzero structure of submatrix B cannot change then we know that 887bbb85fb3SSatish Balay no processor disassembled thus we can skip this stuff 888bbb85fb3SSatish Balay */ 889bbb85fb3SSatish Balay if (!((Mat_SeqBAIJ*)baij->B->data)->nonew) { 890bbb85fb3SSatish Balay ierr = MPI_Allreduce(&mat->was_assembled,&other_disassembled,1,MPI_INT,MPI_PROD,mat->comm);CHKERRQ(ierr); 891bbb85fb3SSatish Balay if (mat->was_assembled && !other_disassembled) { 892bbb85fb3SSatish Balay ierr = DisAssemble_MPIBAIJ(mat);CHKERRQ(ierr); 893bbb85fb3SSatish Balay } 894bbb85fb3SSatish Balay } 895bbb85fb3SSatish Balay 896bbb85fb3SSatish Balay if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) { 897bbb85fb3SSatish Balay ierr = MatSetUpMultiply_MPIBAIJ(mat);CHKERRQ(ierr); 898bbb85fb3SSatish Balay } 899bbb85fb3SSatish Balay ierr = MatAssemblyBegin(baij->B,mode);CHKERRQ(ierr); 900bbb85fb3SSatish Balay ierr = MatAssemblyEnd(baij->B,mode);CHKERRQ(ierr); 901bbb85fb3SSatish Balay 902aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g) 903bbb85fb3SSatish Balay if (baij->ht && mode== MAT_FINAL_ASSEMBLY) { 904c38d4ed2SBarry Smith PLogInfo(0,"MatAssemblyEnd_MPIBAIJ:Average Hash Table Search in MatSetValues = %5.2f\n",((double)baij->ht_total_ct)/baij->ht_insert_ct); 905bbb85fb3SSatish Balay baij->ht_total_ct = 0; 906bbb85fb3SSatish Balay baij->ht_insert_ct = 0; 907bbb85fb3SSatish Balay } 908bbb85fb3SSatish Balay #endif 909bbb85fb3SSatish Balay if (baij->ht_flag && !baij->ht && mode == MAT_FINAL_ASSEMBLY) { 910bbb85fb3SSatish Balay ierr = MatCreateHashTable_MPIBAIJ_Private(mat,baij->ht_fact);CHKERRQ(ierr); 911bbb85fb3SSatish Balay mat->ops->setvalues = MatSetValues_MPIBAIJ_HT; 912bbb85fb3SSatish Balay mat->ops->setvaluesblocked = MatSetValuesBlocked_MPIBAIJ_HT; 913bbb85fb3SSatish Balay } 914bbb85fb3SSatish Balay 915606d414cSSatish Balay if (baij->rowvalues) { 916606d414cSSatish Balay ierr = PetscFree(baij->rowvalues);CHKERRQ(ierr); 917606d414cSSatish Balay baij->rowvalues = 0; 918606d414cSSatish Balay } 919bbb85fb3SSatish Balay PetscFunctionReturn(0); 920bbb85fb3SSatish Balay } 92157b952d6SSatish Balay 922225e174dSSatish Balay /* 9235615d1e5SSatish Balay #undef __FUNC__ 924*b2863d3aSBarry Smith #define __FUNC__ /*<a name=""></a>*/"MatView_MPIBAIJ_Binary" 92557b952d6SSatish Balay static int MatView_MPIBAIJ_Binary(Mat mat,Viewer viewer) 92657b952d6SSatish Balay { 92757b952d6SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 92857b952d6SSatish Balay int ierr; 92957b952d6SSatish Balay 930d64ed03dSBarry Smith PetscFunctionBegin; 93157b952d6SSatish Balay if (baij->size == 1) { 93257b952d6SSatish Balay ierr = MatView(baij->A,viewer);CHKERRQ(ierr); 933a8c6a408SBarry Smith } else SETERRQ(PETSC_ERR_SUP,0,"Only uniprocessor output supported"); 9343a40ed3dSBarry Smith PetscFunctionReturn(0); 93557b952d6SSatish Balay } 936225e174dSSatish Balay */ 93757b952d6SSatish Balay 9385615d1e5SSatish Balay #undef __FUNC__ 939*b2863d3aSBarry Smith #define __FUNC__ /*<a name=""></a>*/"MatView_MPIBAIJ_ASCIIorDraworSocket" 9407b2a1423SBarry Smith static int MatView_MPIBAIJ_ASCIIorDraworSocket(Mat mat,Viewer viewer) 94157b952d6SSatish Balay { 94257b952d6SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 94377ed5343SBarry Smith int ierr,format,bs = baij->bs,size = baij->size,rank = baij->rank; 9446831982aSBarry Smith PetscTruth isascii,isdraw; 94557b952d6SSatish Balay 946d64ed03dSBarry Smith PetscFunctionBegin; 9476831982aSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,ASCII_VIEWER,&isascii);CHKERRQ(ierr); 9486831982aSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,DRAW_VIEWER,&isdraw);CHKERRQ(ierr); 9490f5bd95cSBarry Smith if (isascii) { 950d41123aaSBarry Smith ierr = ViewerGetFormat(viewer,&format);CHKERRQ(ierr); 951639f9d9dSBarry Smith if (format == VIEWER_FORMAT_ASCII_INFO_LONG) { 9524e220ebcSLois Curfman McInnes MatInfo info; 953d132466eSBarry Smith ierr = MPI_Comm_rank(mat->comm,&rank);CHKERRQ(ierr); 954d41123aaSBarry Smith ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr); 9556831982aSBarry Smith ierr = ViewerASCIISynchronizedPrintf(viewer,"[%d] Local rows %d nz %d nz alloced %d bs %d mem %d\n", 9564e220ebcSLois Curfman McInnes rank,baij->m,(int)info.nz_used*bs,(int)info.nz_allocated*bs, 9576831982aSBarry Smith baij->bs,(int)info.memory);CHKERRQ(ierr); 958d132466eSBarry Smith ierr = MatGetInfo(baij->A,MAT_LOCAL,&info);CHKERRQ(ierr); 9596831982aSBarry Smith ierr = ViewerASCIISynchronizedPrintf(viewer,"[%d] on-diagonal part: nz %d \n",rank,(int)info.nz_used*bs);CHKERRQ(ierr); 960d132466eSBarry Smith ierr = MatGetInfo(baij->B,MAT_LOCAL,&info);CHKERRQ(ierr); 9616831982aSBarry Smith ierr = ViewerASCIISynchronizedPrintf(viewer,"[%d] off-diagonal part: nz %d \n",rank,(int)info.nz_used*bs);CHKERRQ(ierr); 9626831982aSBarry Smith ierr = ViewerFlush(viewer);CHKERRQ(ierr); 96357b952d6SSatish Balay ierr = VecScatterView(baij->Mvctx,viewer);CHKERRQ(ierr); 9643a40ed3dSBarry Smith PetscFunctionReturn(0); 965d64ed03dSBarry Smith } else if (format == VIEWER_FORMAT_ASCII_INFO) { 9666831982aSBarry Smith ierr = ViewerASCIIPrintf(viewer," block size is %d\n",bs);CHKERRQ(ierr); 9673a40ed3dSBarry Smith PetscFunctionReturn(0); 96857b952d6SSatish Balay } 96957b952d6SSatish Balay } 97057b952d6SSatish Balay 9710f5bd95cSBarry Smith if (isdraw) { 97257b952d6SSatish Balay Draw draw; 97357b952d6SSatish Balay PetscTruth isnull; 97477ed5343SBarry Smith ierr = ViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr); 9753a40ed3dSBarry Smith ierr = DrawIsNull(draw,&isnull);CHKERRQ(ierr); if (isnull) PetscFunctionReturn(0); 97657b952d6SSatish Balay } 97757b952d6SSatish Balay 97857b952d6SSatish Balay if (size == 1) { 97957b952d6SSatish Balay ierr = MatView(baij->A,viewer);CHKERRQ(ierr); 980d64ed03dSBarry Smith } else { 98157b952d6SSatish Balay /* assemble the entire matrix onto first processor. */ 98257b952d6SSatish Balay Mat A; 98357b952d6SSatish Balay Mat_SeqBAIJ *Aloc; 9843eda8832SBarry Smith int M = baij->M,N = baij->N,*ai,*aj,col,i,j,k,*rvals,mbs = baij->mbs; 9853eda8832SBarry Smith MatScalar *a; 9863eda8832SBarry Smith #if defined(PETSC_USE_MAT_SINGLE) 9873eda8832SBarry Smith Scalar *atmp = (Scalar*)PetscMalloc(baij->bs*sizeof(Scalar)); 9883eda8832SBarry Smith int l; 9893eda8832SBarry Smith #endif 99057b952d6SSatish Balay 99157b952d6SSatish Balay if (!rank) { 99255843e3eSBarry Smith ierr = MatCreateMPIBAIJ(mat->comm,baij->bs,M,N,M,N,0,PETSC_NULL,0,PETSC_NULL,&A);CHKERRQ(ierr); 993d64ed03dSBarry Smith } else { 99455843e3eSBarry Smith ierr = MatCreateMPIBAIJ(mat->comm,baij->bs,0,0,M,N,0,PETSC_NULL,0,PETSC_NULL,&A);CHKERRQ(ierr); 99557b952d6SSatish Balay } 99657b952d6SSatish Balay PLogObjectParent(mat,A); 99757b952d6SSatish Balay 99857b952d6SSatish Balay /* copy over the A part */ 99957b952d6SSatish Balay Aloc = (Mat_SeqBAIJ*)baij->A->data; 100057b952d6SSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 100157b952d6SSatish Balay rvals = (int*)PetscMalloc(bs*sizeof(int));CHKPTRQ(rvals); 100257b952d6SSatish Balay 100357b952d6SSatish Balay for (i=0; i<mbs; i++) { 100457b952d6SSatish Balay rvals[0] = bs*(baij->rstart + i); 100557b952d6SSatish Balay for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; } 100657b952d6SSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 100757b952d6SSatish Balay col = (baij->cstart+aj[j])*bs; 100857b952d6SSatish Balay for (k=0; k<bs; k++) { 10093eda8832SBarry Smith #if defined(PETSC_USE_MAT_SINGLE) 10103eda8832SBarry Smith for (l=0; l<bs; l++) atmp[l] = a[l]; 10113eda8832SBarry Smith #else 10123eda8832SBarry Smith atmp = a; 10133eda8832SBarry Smith #endif 10143eda8832SBarry Smith ierr = MatSetValues_MPIBAIJ(A,bs,rvals,1,&col,atmp,INSERT_VALUES);CHKERRQ(ierr); 1015cee3aa6bSSatish Balay col++; a += bs; 101657b952d6SSatish Balay } 101757b952d6SSatish Balay } 101857b952d6SSatish Balay } 101957b952d6SSatish Balay /* copy over the B part */ 102057b952d6SSatish Balay Aloc = (Mat_SeqBAIJ*)baij->B->data; 102157b952d6SSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 102257b952d6SSatish Balay for (i=0; i<mbs; i++) { 102357b952d6SSatish Balay rvals[0] = bs*(baij->rstart + i); 102457b952d6SSatish Balay for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; } 102557b952d6SSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 102657b952d6SSatish Balay col = baij->garray[aj[j]]*bs; 102757b952d6SSatish Balay for (k=0; k<bs; k++) { 10283eda8832SBarry Smith #if defined(PETSC_USE_MAT_SINGLE) 10293eda8832SBarry Smith for (l=0; l<bs; l++) atmp[l] = a[l]; 10303eda8832SBarry Smith #else 10313eda8832SBarry Smith atmp = a; 10323eda8832SBarry Smith #endif 10333eda8832SBarry Smith ierr = MatSetValues_MPIBAIJ(A,bs,rvals,1,&col,atmp,INSERT_VALUES);CHKERRQ(ierr); 1034cee3aa6bSSatish Balay col++; a += bs; 103557b952d6SSatish Balay } 103657b952d6SSatish Balay } 103757b952d6SSatish Balay } 10383eda8832SBarry Smith #if defined(PETSC_USE_MAT_SINGLE) 10393eda8832SBarry Smith ierr = PetscFree(atmp);CHKERRQ(ierr); 10403eda8832SBarry Smith #endif 1041606d414cSSatish Balay ierr = PetscFree(rvals);CHKERRQ(ierr); 10426d4a8577SBarry Smith ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 10436d4a8577SBarry Smith ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 104455843e3eSBarry Smith /* 104555843e3eSBarry Smith Everyone has to call to draw the matrix since the graphics waits are 104655843e3eSBarry Smith synchronized across all processors that share the Draw object 104755843e3eSBarry Smith */ 10486831982aSBarry Smith if (!rank) { 10496831982aSBarry Smith Viewer sviewer; 10506831982aSBarry Smith ierr = ViewerGetSingleton(viewer,&sviewer);CHKERRQ(ierr); 10516831982aSBarry Smith ierr = MatView(((Mat_MPIBAIJ*)(A->data))->A,sviewer);CHKERRQ(ierr); 10526831982aSBarry Smith ierr = ViewerRestoreSingleton(viewer,&sviewer);CHKERRQ(ierr); 105357b952d6SSatish Balay } 105457b952d6SSatish Balay ierr = MatDestroy(A);CHKERRQ(ierr); 105557b952d6SSatish Balay } 10563a40ed3dSBarry Smith PetscFunctionReturn(0); 105757b952d6SSatish Balay } 105857b952d6SSatish Balay 105957b952d6SSatish Balay 106057b952d6SSatish Balay 10615615d1e5SSatish Balay #undef __FUNC__ 1062*b2863d3aSBarry Smith #define __FUNC__ /*<a name=""></a>*/"MatView_MPIBAIJ" 1063e1311b90SBarry Smith int MatView_MPIBAIJ(Mat mat,Viewer viewer) 106457b952d6SSatish Balay { 106557b952d6SSatish Balay int ierr; 10666831982aSBarry Smith PetscTruth isascii,isdraw,issocket,isbinary; 106757b952d6SSatish Balay 1068d64ed03dSBarry Smith PetscFunctionBegin; 10696831982aSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,ASCII_VIEWER,&isascii);CHKERRQ(ierr); 10706831982aSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,DRAW_VIEWER,&isdraw);CHKERRQ(ierr); 10716831982aSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,SOCKET_VIEWER,&issocket);CHKERRQ(ierr); 10726831982aSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,BINARY_VIEWER,&isbinary);CHKERRQ(ierr); 10730f5bd95cSBarry Smith if (isascii || isdraw || issocket || isbinary) { 10747b2a1423SBarry Smith ierr = MatView_MPIBAIJ_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr); 10755cd90555SBarry Smith } else { 10760f5bd95cSBarry Smith SETERRQ1(1,1,"Viewer type %s not supported by MPIBAIJ matrices",((PetscObject)viewer)->type_name); 107757b952d6SSatish Balay } 10783a40ed3dSBarry Smith PetscFunctionReturn(0); 107957b952d6SSatish Balay } 108057b952d6SSatish Balay 10815615d1e5SSatish Balay #undef __FUNC__ 1082*b2863d3aSBarry Smith #define __FUNC__ /*<a name=""></a>*/"MatDestroy_MPIBAIJ" 1083e1311b90SBarry Smith int MatDestroy_MPIBAIJ(Mat mat) 108479bdfe76SSatish Balay { 108579bdfe76SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 108679bdfe76SSatish Balay int ierr; 108779bdfe76SSatish Balay 1088d64ed03dSBarry Smith PetscFunctionBegin; 108998dd23e9SBarry Smith 109098dd23e9SBarry Smith if (mat->mapping) { 109198dd23e9SBarry Smith ierr = ISLocalToGlobalMappingDestroy(mat->mapping);CHKERRQ(ierr); 109298dd23e9SBarry Smith } 109398dd23e9SBarry Smith if (mat->bmapping) { 109498dd23e9SBarry Smith ierr = ISLocalToGlobalMappingDestroy(mat->bmapping);CHKERRQ(ierr); 109598dd23e9SBarry Smith } 109661b13de0SBarry Smith if (mat->rmap) { 109761b13de0SBarry Smith ierr = MapDestroy(mat->rmap);CHKERRQ(ierr); 109861b13de0SBarry Smith } 109961b13de0SBarry Smith if (mat->cmap) { 110061b13de0SBarry Smith ierr = MapDestroy(mat->cmap);CHKERRQ(ierr); 110161b13de0SBarry Smith } 1102aa482453SBarry Smith #if defined(PETSC_USE_LOG) 1103e1311b90SBarry Smith PLogObjectState((PetscObject)mat,"Rows=%d,Cols=%d",baij->M,baij->N); 110479bdfe76SSatish Balay #endif 110579bdfe76SSatish Balay 11068798bf22SSatish Balay ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr); 11078798bf22SSatish Balay ierr = MatStashDestroy_Private(&mat->bstash);CHKERRQ(ierr); 11088798bf22SSatish Balay 1109606d414cSSatish Balay ierr = PetscFree(baij->rowners);CHKERRQ(ierr); 111079bdfe76SSatish Balay ierr = MatDestroy(baij->A);CHKERRQ(ierr); 111179bdfe76SSatish Balay ierr = MatDestroy(baij->B);CHKERRQ(ierr); 1112aa482453SBarry Smith #if defined (PETSC_USE_CTABLE) 11130f5bd95cSBarry Smith if (baij->colmap) {ierr = PetscTableDelete(baij->colmap);CHKERRQ(ierr);} 111448e59246SSatish Balay #else 1115606d414cSSatish Balay if (baij->colmap) {ierr = PetscFree(baij->colmap);CHKERRQ(ierr);} 111648e59246SSatish Balay #endif 1117606d414cSSatish Balay if (baij->garray) {ierr = PetscFree(baij->garray);CHKERRQ(ierr);} 1118606d414cSSatish Balay if (baij->lvec) {ierr = VecDestroy(baij->lvec);CHKERRQ(ierr);} 1119606d414cSSatish Balay if (baij->Mvctx) {ierr = VecScatterDestroy(baij->Mvctx);CHKERRQ(ierr);} 1120606d414cSSatish Balay if (baij->rowvalues) {ierr = PetscFree(baij->rowvalues);CHKERRQ(ierr);} 1121606d414cSSatish Balay if (baij->barray) {ierr = PetscFree(baij->barray);CHKERRQ(ierr);} 1122606d414cSSatish Balay if (baij->hd) {ierr = PetscFree(baij->hd);CHKERRQ(ierr);} 1123606d414cSSatish Balay ierr = PetscFree(baij);CHKERRQ(ierr); 112479bdfe76SSatish Balay PLogObjectDestroy(mat); 112579bdfe76SSatish Balay PetscHeaderDestroy(mat); 11263a40ed3dSBarry Smith PetscFunctionReturn(0); 112779bdfe76SSatish Balay } 112879bdfe76SSatish Balay 11295615d1e5SSatish Balay #undef __FUNC__ 1130*b2863d3aSBarry Smith #define __FUNC__ /*<a name=""></a>*/"MatMult_MPIBAIJ" 1131ec1ea8d8SLois Curfman McInnes int MatMult_MPIBAIJ(Mat A,Vec xx,Vec yy) 1132cee3aa6bSSatish Balay { 1133cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 113447b4a8eaSLois Curfman McInnes int ierr,nt; 1135cee3aa6bSSatish Balay 1136d64ed03dSBarry Smith PetscFunctionBegin; 1137e1311b90SBarry Smith ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr); 113847b4a8eaSLois Curfman McInnes if (nt != a->n) { 1139a8c6a408SBarry Smith SETERRQ(PETSC_ERR_ARG_SIZ,0,"Incompatible partition of A and xx"); 114047b4a8eaSLois Curfman McInnes } 1141e1311b90SBarry Smith ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr); 114247b4a8eaSLois Curfman McInnes if (nt != a->m) { 1143a8c6a408SBarry Smith SETERRQ(PETSC_ERR_ARG_SIZ,0,"Incompatible parition of A and yy"); 114447b4a8eaSLois Curfman McInnes } 114543a90d84SBarry Smith ierr = VecScatterBegin(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr); 1146f830108cSBarry Smith ierr = (*a->A->ops->mult)(a->A,xx,yy);CHKERRQ(ierr); 114743a90d84SBarry Smith ierr = VecScatterEnd(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr); 1148f830108cSBarry Smith ierr = (*a->B->ops->multadd)(a->B,a->lvec,yy,yy);CHKERRQ(ierr); 114943a90d84SBarry Smith ierr = VecScatterPostRecvs(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr); 11503a40ed3dSBarry Smith PetscFunctionReturn(0); 1151cee3aa6bSSatish Balay } 1152cee3aa6bSSatish Balay 11535615d1e5SSatish Balay #undef __FUNC__ 1154*b2863d3aSBarry Smith #define __FUNC__ /*<a name=""></a>*/"MatMultAdd_MPIBAIJ" 1155ec1ea8d8SLois Curfman McInnes int MatMultAdd_MPIBAIJ(Mat A,Vec xx,Vec yy,Vec zz) 1156cee3aa6bSSatish Balay { 1157cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1158cee3aa6bSSatish Balay int ierr; 1159d64ed03dSBarry Smith 1160d64ed03dSBarry Smith PetscFunctionBegin; 116143a90d84SBarry Smith ierr = VecScatterBegin(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr); 1162f830108cSBarry Smith ierr = (*a->A->ops->multadd)(a->A,xx,yy,zz);CHKERRQ(ierr); 116343a90d84SBarry Smith ierr = VecScatterEnd(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr); 1164f830108cSBarry Smith ierr = (*a->B->ops->multadd)(a->B,a->lvec,zz,zz);CHKERRQ(ierr); 11653a40ed3dSBarry Smith PetscFunctionReturn(0); 1166cee3aa6bSSatish Balay } 1167cee3aa6bSSatish Balay 11685615d1e5SSatish Balay #undef __FUNC__ 1169*b2863d3aSBarry Smith #define __FUNC__ /*<a name=""></a>*/"MatMultTranspose_MPIBAIJ" 11707c922b88SBarry Smith int MatMultTranspose_MPIBAIJ(Mat A,Vec xx,Vec yy) 1171cee3aa6bSSatish Balay { 1172cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1173cee3aa6bSSatish Balay int ierr; 1174cee3aa6bSSatish Balay 1175d64ed03dSBarry Smith PetscFunctionBegin; 1176cee3aa6bSSatish Balay /* do nondiagonal part */ 11777c922b88SBarry Smith ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr); 1178cee3aa6bSSatish Balay /* send it on its way */ 1179537820f0SBarry Smith ierr = VecScatterBegin(a->lvec,yy,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr); 1180cee3aa6bSSatish Balay /* do local part */ 11817c922b88SBarry Smith ierr = (*a->A->ops->multtranspose)(a->A,xx,yy);CHKERRQ(ierr); 1182cee3aa6bSSatish Balay /* receive remote parts: note this assumes the values are not actually */ 1183cee3aa6bSSatish Balay /* inserted in yy until the next line, which is true for my implementation*/ 1184cee3aa6bSSatish Balay /* but is not perhaps always true. */ 1185639f9d9dSBarry Smith ierr = VecScatterEnd(a->lvec,yy,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr); 11863a40ed3dSBarry Smith PetscFunctionReturn(0); 1187cee3aa6bSSatish Balay } 1188cee3aa6bSSatish Balay 11895615d1e5SSatish Balay #undef __FUNC__ 1190*b2863d3aSBarry Smith #define __FUNC__ /*<a name=""></a>*/"MatMultTransposeAdd_MPIBAIJ" 11917c922b88SBarry Smith int MatMultTransposeAdd_MPIBAIJ(Mat A,Vec xx,Vec yy,Vec zz) 1192cee3aa6bSSatish Balay { 1193cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1194cee3aa6bSSatish Balay int ierr; 1195cee3aa6bSSatish Balay 1196d64ed03dSBarry Smith PetscFunctionBegin; 1197cee3aa6bSSatish Balay /* do nondiagonal part */ 11987c922b88SBarry Smith ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr); 1199cee3aa6bSSatish Balay /* send it on its way */ 1200537820f0SBarry Smith ierr = VecScatterBegin(a->lvec,zz,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr); 1201cee3aa6bSSatish Balay /* do local part */ 12027c922b88SBarry Smith ierr = (*a->A->ops->multtransposeadd)(a->A,xx,yy,zz);CHKERRQ(ierr); 1203cee3aa6bSSatish Balay /* receive remote parts: note this assumes the values are not actually */ 1204cee3aa6bSSatish Balay /* inserted in yy until the next line, which is true for my implementation*/ 1205cee3aa6bSSatish Balay /* but is not perhaps always true. */ 1206537820f0SBarry Smith ierr = VecScatterEnd(a->lvec,zz,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr); 12073a40ed3dSBarry Smith PetscFunctionReturn(0); 1208cee3aa6bSSatish Balay } 1209cee3aa6bSSatish Balay 1210cee3aa6bSSatish Balay /* 1211cee3aa6bSSatish Balay This only works correctly for square matrices where the subblock A->A is the 1212cee3aa6bSSatish Balay diagonal block 1213cee3aa6bSSatish Balay */ 12145615d1e5SSatish Balay #undef __FUNC__ 1215*b2863d3aSBarry Smith #define __FUNC__ /*<a name=""></a>*/"MatGetDiagonal_MPIBAIJ" 1216ec1ea8d8SLois Curfman McInnes int MatGetDiagonal_MPIBAIJ(Mat A,Vec v) 1217cee3aa6bSSatish Balay { 1218cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 12193a40ed3dSBarry Smith int ierr; 1220d64ed03dSBarry Smith 1221d64ed03dSBarry Smith PetscFunctionBegin; 1222a8c6a408SBarry Smith if (a->M != a->N) SETERRQ(PETSC_ERR_SUP,0,"Supports only square matrix where A->A is diag block"); 12233a40ed3dSBarry Smith ierr = MatGetDiagonal(a->A,v);CHKERRQ(ierr); 12243a40ed3dSBarry Smith PetscFunctionReturn(0); 1225cee3aa6bSSatish Balay } 1226cee3aa6bSSatish Balay 12275615d1e5SSatish Balay #undef __FUNC__ 1228*b2863d3aSBarry Smith #define __FUNC__ /*<a name=""></a>*/"MatScale_MPIBAIJ" 1229ec1ea8d8SLois Curfman McInnes int MatScale_MPIBAIJ(Scalar *aa,Mat A) 1230cee3aa6bSSatish Balay { 1231cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1232cee3aa6bSSatish Balay int ierr; 1233d64ed03dSBarry Smith 1234d64ed03dSBarry Smith PetscFunctionBegin; 1235cee3aa6bSSatish Balay ierr = MatScale(aa,a->A);CHKERRQ(ierr); 1236cee3aa6bSSatish Balay ierr = MatScale(aa,a->B);CHKERRQ(ierr); 12373a40ed3dSBarry Smith PetscFunctionReturn(0); 1238cee3aa6bSSatish Balay } 1239026e39d0SSatish Balay 12405615d1e5SSatish Balay #undef __FUNC__ 1241*b2863d3aSBarry Smith #define __FUNC__ /*<a name=""></a>*/"MatGetSize_MPIBAIJ" 1242ec1ea8d8SLois Curfman McInnes int MatGetSize_MPIBAIJ(Mat matin,int *m,int *n) 124357b952d6SSatish Balay { 124457b952d6SSatish Balay Mat_MPIBAIJ *mat = (Mat_MPIBAIJ*)matin->data; 1245d64ed03dSBarry Smith 1246d64ed03dSBarry Smith PetscFunctionBegin; 1247bd7f49f5SSatish Balay if (m) *m = mat->M; 1248bd7f49f5SSatish Balay if (n) *n = mat->N; 12493a40ed3dSBarry Smith PetscFunctionReturn(0); 125057b952d6SSatish Balay } 125157b952d6SSatish Balay 12525615d1e5SSatish Balay #undef __FUNC__ 1253*b2863d3aSBarry Smith #define __FUNC__ /*<a name=""></a>*/"MatGetLocalSize_MPIBAIJ" 1254ec1ea8d8SLois Curfman McInnes int MatGetLocalSize_MPIBAIJ(Mat matin,int *m,int *n) 125557b952d6SSatish Balay { 125657b952d6SSatish Balay Mat_MPIBAIJ *mat = (Mat_MPIBAIJ*)matin->data; 1257d64ed03dSBarry Smith 1258d64ed03dSBarry Smith PetscFunctionBegin; 1259f830108cSBarry Smith *m = mat->m; *n = mat->n; 12603a40ed3dSBarry Smith PetscFunctionReturn(0); 126157b952d6SSatish Balay } 126257b952d6SSatish Balay 12635615d1e5SSatish Balay #undef __FUNC__ 1264*b2863d3aSBarry Smith #define __FUNC__ /*<a name=""></a>*/"MatGetOwnershipRange_MPIBAIJ" 1265ec1ea8d8SLois Curfman McInnes int MatGetOwnershipRange_MPIBAIJ(Mat matin,int *m,int *n) 126657b952d6SSatish Balay { 126757b952d6SSatish Balay Mat_MPIBAIJ *mat = (Mat_MPIBAIJ*)matin->data; 1268d64ed03dSBarry Smith 1269d64ed03dSBarry Smith PetscFunctionBegin; 1270a21fb8cbSBarry Smith if (m) *m = mat->rstart*mat->bs; 1271a21fb8cbSBarry Smith if (n) *n = mat->rend*mat->bs; 12723a40ed3dSBarry Smith PetscFunctionReturn(0); 127357b952d6SSatish Balay } 127457b952d6SSatish Balay 12755615d1e5SSatish Balay #undef __FUNC__ 1276*b2863d3aSBarry Smith #define __FUNC__ /*<a name=""></a>*/"MatGetRow_MPIBAIJ" 1277acdf5bf4SSatish Balay int MatGetRow_MPIBAIJ(Mat matin,int row,int *nz,int **idx,Scalar **v) 1278acdf5bf4SSatish Balay { 1279acdf5bf4SSatish Balay Mat_MPIBAIJ *mat = (Mat_MPIBAIJ*)matin->data; 1280acdf5bf4SSatish Balay Scalar *vworkA,*vworkB,**pvA,**pvB,*v_p; 1281acdf5bf4SSatish Balay int bs = mat->bs,bs2 = mat->bs2,i,ierr,*cworkA,*cworkB,**pcA,**pcB; 1282d9d09a02SSatish Balay int nztot,nzA,nzB,lrow,brstart = mat->rstart*bs,brend = mat->rend*bs; 1283d9d09a02SSatish Balay int *cmap,*idx_p,cstart = mat->cstart; 1284acdf5bf4SSatish Balay 1285d64ed03dSBarry Smith PetscFunctionBegin; 1286a8c6a408SBarry Smith if (mat->getrowactive == PETSC_TRUE) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,0,"Already active"); 1287acdf5bf4SSatish Balay mat->getrowactive = PETSC_TRUE; 1288acdf5bf4SSatish Balay 1289acdf5bf4SSatish Balay if (!mat->rowvalues && (idx || v)) { 1290acdf5bf4SSatish Balay /* 1291acdf5bf4SSatish Balay allocate enough space to hold information from the longest row. 1292acdf5bf4SSatish Balay */ 1293acdf5bf4SSatish Balay Mat_SeqBAIJ *Aa = (Mat_SeqBAIJ*)mat->A->data,*Ba = (Mat_SeqBAIJ*)mat->B->data; 1294bd16c2feSSatish Balay int max = 1,mbs = mat->mbs,tmp; 1295bd16c2feSSatish Balay for (i=0; i<mbs; i++) { 1296acdf5bf4SSatish Balay tmp = Aa->i[i+1] - Aa->i[i] + Ba->i[i+1] - Ba->i[i]; 1297acdf5bf4SSatish Balay if (max < tmp) { max = tmp; } 1298acdf5bf4SSatish Balay } 1299549d3d68SSatish Balay mat->rowvalues = (Scalar*)PetscMalloc(max*bs2*(sizeof(int)+sizeof(Scalar)));CHKPTRQ(mat->rowvalues); 1300acdf5bf4SSatish Balay mat->rowindices = (int*)(mat->rowvalues + max*bs2); 1301acdf5bf4SSatish Balay } 1302acdf5bf4SSatish Balay 1303a8c6a408SBarry Smith if (row < brstart || row >= brend) SETERRQ(PETSC_ERR_SUP,0,"Only local rows") 1304d9d09a02SSatish Balay lrow = row - brstart; 1305acdf5bf4SSatish Balay 1306acdf5bf4SSatish Balay pvA = &vworkA; pcA = &cworkA; pvB = &vworkB; pcB = &cworkB; 1307acdf5bf4SSatish Balay if (!v) {pvA = 0; pvB = 0;} 1308acdf5bf4SSatish Balay if (!idx) {pcA = 0; if (!v) pcB = 0;} 1309f830108cSBarry Smith ierr = (*mat->A->ops->getrow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr); 1310f830108cSBarry Smith ierr = (*mat->B->ops->getrow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr); 1311acdf5bf4SSatish Balay nztot = nzA + nzB; 1312acdf5bf4SSatish Balay 1313acdf5bf4SSatish Balay cmap = mat->garray; 1314acdf5bf4SSatish Balay if (v || idx) { 1315acdf5bf4SSatish Balay if (nztot) { 1316acdf5bf4SSatish Balay /* Sort by increasing column numbers, assuming A and B already sorted */ 1317acdf5bf4SSatish Balay int imark = -1; 1318acdf5bf4SSatish Balay if (v) { 1319acdf5bf4SSatish Balay *v = v_p = mat->rowvalues; 1320acdf5bf4SSatish Balay for (i=0; i<nzB; i++) { 1321d9d09a02SSatish Balay if (cmap[cworkB[i]/bs] < cstart) v_p[i] = vworkB[i]; 1322acdf5bf4SSatish Balay else break; 1323acdf5bf4SSatish Balay } 1324acdf5bf4SSatish Balay imark = i; 1325acdf5bf4SSatish Balay for (i=0; i<nzA; i++) v_p[imark+i] = vworkA[i]; 1326acdf5bf4SSatish Balay for (i=imark; i<nzB; i++) v_p[nzA+i] = vworkB[i]; 1327acdf5bf4SSatish Balay } 1328acdf5bf4SSatish Balay if (idx) { 1329acdf5bf4SSatish Balay *idx = idx_p = mat->rowindices; 1330acdf5bf4SSatish Balay if (imark > -1) { 1331acdf5bf4SSatish Balay for (i=0; i<imark; i++) { 1332bd16c2feSSatish Balay idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs; 1333acdf5bf4SSatish Balay } 1334acdf5bf4SSatish Balay } else { 1335acdf5bf4SSatish Balay for (i=0; i<nzB; i++) { 1336d9d09a02SSatish Balay if (cmap[cworkB[i]/bs] < cstart) 1337d9d09a02SSatish Balay idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ; 1338acdf5bf4SSatish Balay else break; 1339acdf5bf4SSatish Balay } 1340acdf5bf4SSatish Balay imark = i; 1341acdf5bf4SSatish Balay } 1342d9d09a02SSatish Balay for (i=0; i<nzA; i++) idx_p[imark+i] = cstart*bs + cworkA[i]; 1343d9d09a02SSatish Balay for (i=imark; i<nzB; i++) idx_p[nzA+i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ; 1344acdf5bf4SSatish Balay } 1345d64ed03dSBarry Smith } else { 1346d212a18eSSatish Balay if (idx) *idx = 0; 1347d212a18eSSatish Balay if (v) *v = 0; 1348d212a18eSSatish Balay } 1349acdf5bf4SSatish Balay } 1350acdf5bf4SSatish Balay *nz = nztot; 1351f830108cSBarry Smith ierr = (*mat->A->ops->restorerow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr); 1352f830108cSBarry Smith ierr = (*mat->B->ops->restorerow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr); 13533a40ed3dSBarry Smith PetscFunctionReturn(0); 1354acdf5bf4SSatish Balay } 1355acdf5bf4SSatish Balay 13565615d1e5SSatish Balay #undef __FUNC__ 1357*b2863d3aSBarry Smith #define __FUNC__ /*<a name=""></a>*/"MatRestoreRow_MPIBAIJ" 1358acdf5bf4SSatish Balay int MatRestoreRow_MPIBAIJ(Mat mat,int row,int *nz,int **idx,Scalar **v) 1359acdf5bf4SSatish Balay { 1360acdf5bf4SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 1361d64ed03dSBarry Smith 1362d64ed03dSBarry Smith PetscFunctionBegin; 1363acdf5bf4SSatish Balay if (baij->getrowactive == PETSC_FALSE) { 1364a8c6a408SBarry Smith SETERRQ(PETSC_ERR_ARG_WRONGSTATE,0,"MatGetRow not called"); 1365acdf5bf4SSatish Balay } 1366acdf5bf4SSatish Balay baij->getrowactive = PETSC_FALSE; 13673a40ed3dSBarry Smith PetscFunctionReturn(0); 1368acdf5bf4SSatish Balay } 1369acdf5bf4SSatish Balay 13705615d1e5SSatish Balay #undef __FUNC__ 1371*b2863d3aSBarry Smith #define __FUNC__ /*<a name=""></a>*/"MatGetBlockSize_MPIBAIJ" 1372ec1ea8d8SLois Curfman McInnes int MatGetBlockSize_MPIBAIJ(Mat mat,int *bs) 13735a838052SSatish Balay { 13745a838052SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 1375d64ed03dSBarry Smith 1376d64ed03dSBarry Smith PetscFunctionBegin; 13775a838052SSatish Balay *bs = baij->bs; 13783a40ed3dSBarry Smith PetscFunctionReturn(0); 13795a838052SSatish Balay } 13805a838052SSatish Balay 13815615d1e5SSatish Balay #undef __FUNC__ 1382*b2863d3aSBarry Smith #define __FUNC__ /*<a name=""></a>*/"MatZeroEntries_MPIBAIJ" 1383ec1ea8d8SLois Curfman McInnes int MatZeroEntries_MPIBAIJ(Mat A) 138458667388SSatish Balay { 138558667388SSatish Balay Mat_MPIBAIJ *l = (Mat_MPIBAIJ*)A->data; 138658667388SSatish Balay int ierr; 1387d64ed03dSBarry Smith 1388d64ed03dSBarry Smith PetscFunctionBegin; 138958667388SSatish Balay ierr = MatZeroEntries(l->A);CHKERRQ(ierr); 139058667388SSatish Balay ierr = MatZeroEntries(l->B);CHKERRQ(ierr); 13913a40ed3dSBarry Smith PetscFunctionReturn(0); 139258667388SSatish Balay } 13930ac07820SSatish Balay 13945615d1e5SSatish Balay #undef __FUNC__ 1395*b2863d3aSBarry Smith #define __FUNC__ /*<a name=""></a>*/"MatGetInfo_MPIBAIJ" 1396ec1ea8d8SLois Curfman McInnes int MatGetInfo_MPIBAIJ(Mat matin,MatInfoType flag,MatInfo *info) 13970ac07820SSatish Balay { 13984e220ebcSLois Curfman McInnes Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)matin->data; 13994e220ebcSLois Curfman McInnes Mat A = a->A,B = a->B; 14007d57db60SLois Curfman McInnes int ierr; 1401329f5518SBarry Smith PetscReal isend[5],irecv[5]; 14020ac07820SSatish Balay 1403d64ed03dSBarry Smith PetscFunctionBegin; 14044e220ebcSLois Curfman McInnes info->block_size = (double)a->bs; 14054e220ebcSLois Curfman McInnes ierr = MatGetInfo(A,MAT_LOCAL,info);CHKERRQ(ierr); 14060e4b21beSBarry Smith isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded; 1407de87f314SBarry Smith isend[3] = info->memory; isend[4] = info->mallocs; 14084e220ebcSLois Curfman McInnes ierr = MatGetInfo(B,MAT_LOCAL,info);CHKERRQ(ierr); 14090e4b21beSBarry Smith isend[0] += info->nz_used; isend[1] += info->nz_allocated; isend[2] += info->nz_unneeded; 1410de87f314SBarry Smith isend[3] += info->memory; isend[4] += info->mallocs; 14110ac07820SSatish Balay if (flag == MAT_LOCAL) { 14124e220ebcSLois Curfman McInnes info->nz_used = isend[0]; 14134e220ebcSLois Curfman McInnes info->nz_allocated = isend[1]; 14144e220ebcSLois Curfman McInnes info->nz_unneeded = isend[2]; 14154e220ebcSLois Curfman McInnes info->memory = isend[3]; 14164e220ebcSLois Curfman McInnes info->mallocs = isend[4]; 14170ac07820SSatish Balay } else if (flag == MAT_GLOBAL_MAX) { 1418f7cdd7c9SBarry Smith ierr = MPI_Allreduce(isend,irecv,5,MPI_DOUBLE,MPI_MAX,matin->comm);CHKERRQ(ierr); 14194e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 14204e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 14214e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 14224e220ebcSLois Curfman McInnes info->memory = irecv[3]; 14234e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 14240ac07820SSatish Balay } else if (flag == MAT_GLOBAL_SUM) { 1425f7cdd7c9SBarry Smith ierr = MPI_Allreduce(isend,irecv,5,MPI_DOUBLE,MPI_SUM,matin->comm);CHKERRQ(ierr); 14264e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 14274e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 14284e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 14294e220ebcSLois Curfman McInnes info->memory = irecv[3]; 14304e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 1431d41123aaSBarry Smith } else { 1432d41123aaSBarry Smith SETERRQ1(1,1,"Unknown MatInfoType argument %d",flag); 14330ac07820SSatish Balay } 14345a5d4f66SBarry Smith info->rows_global = (double)a->M; 14355a5d4f66SBarry Smith info->columns_global = (double)a->N; 14365a5d4f66SBarry Smith info->rows_local = (double)a->m; 14375a5d4f66SBarry Smith info->columns_local = (double)a->N; 14384e220ebcSLois Curfman McInnes info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */ 14394e220ebcSLois Curfman McInnes info->fill_ratio_needed = 0; 14404e220ebcSLois Curfman McInnes info->factor_mallocs = 0; 14413a40ed3dSBarry Smith PetscFunctionReturn(0); 14420ac07820SSatish Balay } 14430ac07820SSatish Balay 14445615d1e5SSatish Balay #undef __FUNC__ 1445*b2863d3aSBarry Smith #define __FUNC__ /*<a name=""></a>*/"MatSetOption_MPIBAIJ" 1446ec1ea8d8SLois Curfman McInnes int MatSetOption_MPIBAIJ(Mat A,MatOption op) 144758667388SSatish Balay { 144858667388SSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 144998305bb5SBarry Smith int ierr; 145058667388SSatish Balay 1451d64ed03dSBarry Smith PetscFunctionBegin; 145258667388SSatish Balay if (op == MAT_NO_NEW_NONZERO_LOCATIONS || 145358667388SSatish Balay op == MAT_YES_NEW_NONZERO_LOCATIONS || 14546da5968aSLois Curfman McInnes op == MAT_COLUMNS_UNSORTED || 1455c2653b3dSLois Curfman McInnes op == MAT_COLUMNS_SORTED || 14564787f768SSatish Balay op == MAT_NEW_NONZERO_ALLOCATION_ERR || 14577c922b88SBarry Smith op == MAT_KEEP_ZEROED_ROWS || 14584787f768SSatish Balay op == MAT_NEW_NONZERO_LOCATION_ERR) { 145998305bb5SBarry Smith ierr = MatSetOption(a->A,op);CHKERRQ(ierr); 146098305bb5SBarry Smith ierr = MatSetOption(a->B,op);CHKERRQ(ierr); 1461b1fbbac0SLois Curfman McInnes } else if (op == MAT_ROW_ORIENTED) { 14627c922b88SBarry Smith a->roworiented = PETSC_TRUE; 146398305bb5SBarry Smith ierr = MatSetOption(a->A,op);CHKERRQ(ierr); 146498305bb5SBarry Smith ierr = MatSetOption(a->B,op);CHKERRQ(ierr); 1465b1fbbac0SLois Curfman McInnes } else if (op == MAT_ROWS_SORTED || 14666da5968aSLois Curfman McInnes op == MAT_ROWS_UNSORTED || 146758667388SSatish Balay op == MAT_SYMMETRIC || 146858667388SSatish Balay op == MAT_STRUCTURALLY_SYMMETRIC || 1469b51ba29fSSatish Balay op == MAT_YES_NEW_DIAGONALS || 147098305bb5SBarry Smith op == MAT_USE_HASH_TABLE) { 147158667388SSatish Balay PLogInfo(A,"Info:MatSetOption_MPIBAIJ:Option ignored\n"); 147298305bb5SBarry Smith } else if (op == MAT_COLUMN_ORIENTED) { 14737c922b88SBarry Smith a->roworiented = PETSC_FALSE; 147498305bb5SBarry Smith ierr = MatSetOption(a->A,op);CHKERRQ(ierr); 147598305bb5SBarry Smith ierr = MatSetOption(a->B,op);CHKERRQ(ierr); 14762b362799SSatish Balay } else if (op == MAT_IGNORE_OFF_PROC_ENTRIES) { 14777c922b88SBarry Smith a->donotstash = PETSC_TRUE; 1478d64ed03dSBarry Smith } else if (op == MAT_NO_NEW_DIAGONALS) { 1479d64ed03dSBarry Smith SETERRQ(PETSC_ERR_SUP,0,"MAT_NO_NEW_DIAGONALS"); 1480133cdb44SSatish Balay } else if (op == MAT_USE_HASH_TABLE) { 14817c922b88SBarry Smith a->ht_flag = PETSC_TRUE; 1482d64ed03dSBarry Smith } else { 1483d64ed03dSBarry Smith SETERRQ(PETSC_ERR_SUP,0,"unknown option"); 1484d64ed03dSBarry Smith } 14853a40ed3dSBarry Smith PetscFunctionReturn(0); 148658667388SSatish Balay } 148758667388SSatish Balay 14885615d1e5SSatish Balay #undef __FUNC__ 1489*b2863d3aSBarry Smith #define __FUNC__ /*<a name=""></a>*/"MatTranspose_MPIBAIJ(" 1490ec1ea8d8SLois Curfman McInnes int MatTranspose_MPIBAIJ(Mat A,Mat *matout) 14910ac07820SSatish Balay { 14920ac07820SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)A->data; 14930ac07820SSatish Balay Mat_SeqBAIJ *Aloc; 14940ac07820SSatish Balay Mat B; 149540011551SBarry Smith int ierr,M=baij->M,N=baij->N,*ai,*aj,i,*rvals,j,k,col; 14960ac07820SSatish Balay int bs=baij->bs,mbs=baij->mbs; 14973eda8832SBarry Smith MatScalar *a; 14983eda8832SBarry Smith #if defined(PETSC_USE_MAT_SINGLE) 14993eda8832SBarry Smith Scalar *atmp = (Scalar*)PetscMalloc(baij->bs*sizeof(Scalar)); 15003eda8832SBarry Smith int l; 15013eda8832SBarry Smith #endif 15020ac07820SSatish Balay 1503d64ed03dSBarry Smith PetscFunctionBegin; 15047c922b88SBarry Smith if (!matout && M != N) SETERRQ(PETSC_ERR_ARG_SIZ,0,"Square matrix only for in-place"); 15057c922b88SBarry Smith ierr = MatCreateMPIBAIJ(A->comm,baij->bs,baij->n,baij->m,N,M,0,PETSC_NULL,0,PETSC_NULL,&B);CHKERRQ(ierr); 15060ac07820SSatish Balay 15070ac07820SSatish Balay /* copy over the A part */ 15080ac07820SSatish Balay Aloc = (Mat_SeqBAIJ*)baij->A->data; 15090ac07820SSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 15100ac07820SSatish Balay rvals = (int*)PetscMalloc(bs*sizeof(int));CHKPTRQ(rvals); 15110ac07820SSatish Balay 15120ac07820SSatish Balay for (i=0; i<mbs; i++) { 15130ac07820SSatish Balay rvals[0] = bs*(baij->rstart + i); 15140ac07820SSatish Balay for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; } 15150ac07820SSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 15160ac07820SSatish Balay col = (baij->cstart+aj[j])*bs; 15170ac07820SSatish Balay for (k=0; k<bs; k++) { 15183eda8832SBarry Smith #if defined(PETSC_USE_MAT_SINGLE) 15193eda8832SBarry Smith for (l=0; l<bs; l++) atmp[l] = a[l]; 15203eda8832SBarry Smith #else 15213eda8832SBarry Smith atmp = a; 15223eda8832SBarry Smith #endif 15233eda8832SBarry Smith ierr = MatSetValues_MPIBAIJ(B,1,&col,bs,rvals,atmp,INSERT_VALUES);CHKERRQ(ierr); 15240ac07820SSatish Balay col++; a += bs; 15250ac07820SSatish Balay } 15260ac07820SSatish Balay } 15270ac07820SSatish Balay } 15280ac07820SSatish Balay /* copy over the B part */ 15290ac07820SSatish Balay Aloc = (Mat_SeqBAIJ*)baij->B->data; 15300ac07820SSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 15310ac07820SSatish Balay for (i=0; i<mbs; i++) { 15320ac07820SSatish Balay rvals[0] = bs*(baij->rstart + i); 15330ac07820SSatish Balay for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; } 15340ac07820SSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 15350ac07820SSatish Balay col = baij->garray[aj[j]]*bs; 15360ac07820SSatish Balay for (k=0; k<bs; k++) { 15373eda8832SBarry Smith #if defined(PETSC_USE_MAT_SINGLE) 15383eda8832SBarry Smith for (l=0; l<bs; l++) atmp[l] = a[l]; 15393eda8832SBarry Smith #else 15403eda8832SBarry Smith atmp = a; 15413eda8832SBarry Smith #endif 15423eda8832SBarry Smith ierr = MatSetValues_MPIBAIJ(B,1,&col,bs,rvals,atmp,INSERT_VALUES);CHKERRQ(ierr); 15430ac07820SSatish Balay col++; a += bs; 15440ac07820SSatish Balay } 15450ac07820SSatish Balay } 15460ac07820SSatish Balay } 15473eda8832SBarry Smith #if defined(PETSC_USE_MAT_SINGLE) 15483eda8832SBarry Smith ierr = PetscFree(atmp);CHKERRQ(ierr); 15493eda8832SBarry Smith #endif 1550606d414cSSatish Balay ierr = PetscFree(rvals);CHKERRQ(ierr); 15510ac07820SSatish Balay ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 15520ac07820SSatish Balay ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 15530ac07820SSatish Balay 15547c922b88SBarry Smith if (matout) { 15550ac07820SSatish Balay *matout = B; 15560ac07820SSatish Balay } else { 1557f830108cSBarry Smith PetscOps *Abops; 1558cc2dc46cSBarry Smith MatOps Aops; 1559f830108cSBarry Smith 15600ac07820SSatish Balay /* This isn't really an in-place transpose .... but free data structures from baij */ 1561606d414cSSatish Balay ierr = PetscFree(baij->rowners);CHKERRQ(ierr); 15620ac07820SSatish Balay ierr = MatDestroy(baij->A);CHKERRQ(ierr); 15630ac07820SSatish Balay ierr = MatDestroy(baij->B);CHKERRQ(ierr); 1564aa482453SBarry Smith #if defined (PETSC_USE_CTABLE) 15650f5bd95cSBarry Smith if (baij->colmap) {ierr = PetscTableDelete(baij->colmap);CHKERRQ(ierr);} 1566b1fc9764SSatish Balay #else 1567606d414cSSatish Balay if (baij->colmap) {ierr = PetscFree(baij->colmap);CHKERRQ(ierr);} 1568b1fc9764SSatish Balay #endif 1569606d414cSSatish Balay if (baij->garray) {ierr = PetscFree(baij->garray);CHKERRQ(ierr);} 1570606d414cSSatish Balay if (baij->lvec) {ierr = VecDestroy(baij->lvec);CHKERRQ(ierr);} 1571606d414cSSatish Balay if (baij->Mvctx) {ierr = VecScatterDestroy(baij->Mvctx);CHKERRQ(ierr);} 1572606d414cSSatish Balay ierr = PetscFree(baij);CHKERRQ(ierr); 1573f830108cSBarry Smith 1574f830108cSBarry Smith /* 1575f830108cSBarry Smith This is horrible, horrible code. We need to keep the 1576f830108cSBarry Smith A pointers for the bops and ops but copy everything 1577f830108cSBarry Smith else from C. 1578f830108cSBarry Smith */ 1579f830108cSBarry Smith Abops = A->bops; 1580f830108cSBarry Smith Aops = A->ops; 1581549d3d68SSatish Balay ierr = PetscMemcpy(A,B,sizeof(struct _p_Mat));CHKERRQ(ierr); 1582f830108cSBarry Smith A->bops = Abops; 1583f830108cSBarry Smith A->ops = Aops; 1584f830108cSBarry Smith 15850ac07820SSatish Balay PetscHeaderDestroy(B); 15860ac07820SSatish Balay } 15873a40ed3dSBarry Smith PetscFunctionReturn(0); 15880ac07820SSatish Balay } 15890e95ebc0SSatish Balay 15905615d1e5SSatish Balay #undef __FUNC__ 1591*b2863d3aSBarry Smith #define __FUNC__ /*<a name=""></a>*/"MatDiagonalScale_MPIBAIJ" 159236c4a09eSSatish Balay int MatDiagonalScale_MPIBAIJ(Mat mat,Vec ll,Vec rr) 15930e95ebc0SSatish Balay { 159436c4a09eSSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 159536c4a09eSSatish Balay Mat a = baij->A,b = baij->B; 15960e95ebc0SSatish Balay int ierr,s1,s2,s3; 15970e95ebc0SSatish Balay 1598d64ed03dSBarry Smith PetscFunctionBegin; 159936c4a09eSSatish Balay ierr = MatGetLocalSize(mat,&s2,&s3);CHKERRQ(ierr); 160036c4a09eSSatish Balay if (rr) { 160136c4a09eSSatish Balay ierr = VecGetLocalSize(rr,&s1);CHKERRQ(ierr); 160236c4a09eSSatish Balay if (s1!=s3) SETERRQ(PETSC_ERR_ARG_SIZ,0,"right vector non-conforming local size"); 160336c4a09eSSatish Balay /* Overlap communication with computation. */ 160436c4a09eSSatish Balay ierr = VecScatterBegin(rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD,baij->Mvctx);CHKERRQ(ierr); 160536c4a09eSSatish Balay } 16060e95ebc0SSatish Balay if (ll) { 16070e95ebc0SSatish Balay ierr = VecGetLocalSize(ll,&s1);CHKERRQ(ierr); 160836c4a09eSSatish Balay if (s1!=s2) SETERRQ(PETSC_ERR_ARG_SIZ,0,"left vector non-conforming local size"); 1609a21fb8cbSBarry Smith ierr = (*b->ops->diagonalscale)(b,ll,PETSC_NULL);CHKERRQ(ierr); 16100e95ebc0SSatish Balay } 161136c4a09eSSatish Balay /* scale the diagonal block */ 161236c4a09eSSatish Balay ierr = (*a->ops->diagonalscale)(a,ll,rr);CHKERRQ(ierr); 161336c4a09eSSatish Balay 161436c4a09eSSatish Balay if (rr) { 161536c4a09eSSatish Balay /* Do a scatter end and then right scale the off-diagonal block */ 161636c4a09eSSatish Balay ierr = VecScatterEnd(rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD,baij->Mvctx);CHKERRQ(ierr); 1617a21fb8cbSBarry Smith ierr = (*b->ops->diagonalscale)(b,PETSC_NULL,baij->lvec);CHKERRQ(ierr); 161836c4a09eSSatish Balay } 161936c4a09eSSatish Balay 16203a40ed3dSBarry Smith PetscFunctionReturn(0); 16210e95ebc0SSatish Balay } 16220e95ebc0SSatish Balay 16235615d1e5SSatish Balay #undef __FUNC__ 1624*b2863d3aSBarry Smith #define __FUNC__ /*<a name=""></a>*/"MatZeroRows_MPIBAIJ" 1625ec1ea8d8SLois Curfman McInnes int MatZeroRows_MPIBAIJ(Mat A,IS is,Scalar *diag) 16260ac07820SSatish Balay { 16270ac07820SSatish Balay Mat_MPIBAIJ *l = (Mat_MPIBAIJ*)A->data; 16280ac07820SSatish Balay int i,ierr,N,*rows,*owners = l->rowners,size = l->size; 1629a07cd24cSSatish Balay int *procs,*nprocs,j,found,idx,nsends,*work,row; 16300ac07820SSatish Balay int nmax,*svalues,*starts,*owner,nrecvs,rank = l->rank; 16310ac07820SSatish Balay int *rvalues,tag = A->tag,count,base,slen,n,*source; 1632a07cd24cSSatish Balay int *lens,imdex,*lrows,*values,bs=l->bs,rstart_bs=l->rstart_bs; 16330ac07820SSatish Balay MPI_Comm comm = A->comm; 16340ac07820SSatish Balay MPI_Request *send_waits,*recv_waits; 16350ac07820SSatish Balay MPI_Status recv_status,*send_status; 16360ac07820SSatish Balay IS istmp; 16370ac07820SSatish Balay 1638d64ed03dSBarry Smith PetscFunctionBegin; 16390ac07820SSatish Balay ierr = ISGetSize(is,&N);CHKERRQ(ierr); 16400ac07820SSatish Balay ierr = ISGetIndices(is,&rows);CHKERRQ(ierr); 16410ac07820SSatish Balay 16420ac07820SSatish Balay /* first count number of contributors to each processor */ 16430ac07820SSatish Balay nprocs = (int*)PetscMalloc(2*size*sizeof(int));CHKPTRQ(nprocs); 1644549d3d68SSatish Balay ierr = PetscMemzero(nprocs,2*size*sizeof(int));CHKERRQ(ierr); 1645549d3d68SSatish Balay procs = nprocs + size; 16460ac07820SSatish Balay owner = (int*)PetscMalloc((N+1)*sizeof(int));CHKPTRQ(owner); /* see note*/ 16470ac07820SSatish Balay for (i=0; i<N; i++) { 16480ac07820SSatish Balay idx = rows[i]; 16490ac07820SSatish Balay found = 0; 16500ac07820SSatish Balay for (j=0; j<size; j++) { 16510ac07820SSatish Balay if (idx >= owners[j]*bs && idx < owners[j+1]*bs) { 16520ac07820SSatish Balay nprocs[j]++; procs[j] = 1; owner[i] = j; found = 1; break; 16530ac07820SSatish Balay } 16540ac07820SSatish Balay } 1655a8c6a408SBarry Smith if (!found) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Index out of range"); 16560ac07820SSatish Balay } 16570ac07820SSatish Balay nsends = 0; for (i=0; i<size; i++) { nsends += procs[i];} 16580ac07820SSatish Balay 16590ac07820SSatish Balay /* inform other processors of number of messages and max length*/ 16606831982aSBarry Smith work = (int*)PetscMalloc(2*size*sizeof(int));CHKPTRQ(work); 16616831982aSBarry Smith ierr = MPI_Allreduce(nprocs,work,2*size,MPI_INT,PetscMaxSum_Op,comm);CHKERRQ(ierr); 16620ac07820SSatish Balay nmax = work[rank]; 16636831982aSBarry Smith nrecvs = work[size+rank]; 1664606d414cSSatish Balay ierr = PetscFree(work);CHKERRQ(ierr); 16650ac07820SSatish Balay 16660ac07820SSatish Balay /* post receives: */ 1667d64ed03dSBarry Smith rvalues = (int*)PetscMalloc((nrecvs+1)*(nmax+1)*sizeof(int));CHKPTRQ(rvalues); 1668d64ed03dSBarry Smith recv_waits = (MPI_Request*)PetscMalloc((nrecvs+1)*sizeof(MPI_Request));CHKPTRQ(recv_waits); 16690ac07820SSatish Balay for (i=0; i<nrecvs; i++) { 1670ca161407SBarry Smith ierr = MPI_Irecv(rvalues+nmax*i,nmax,MPI_INT,MPI_ANY_SOURCE,tag,comm,recv_waits+i);CHKERRQ(ierr); 16710ac07820SSatish Balay } 16720ac07820SSatish Balay 16730ac07820SSatish Balay /* do sends: 16740ac07820SSatish Balay 1) starts[i] gives the starting index in svalues for stuff going to 16750ac07820SSatish Balay the ith processor 16760ac07820SSatish Balay */ 16770ac07820SSatish Balay svalues = (int*)PetscMalloc((N+1)*sizeof(int));CHKPTRQ(svalues); 1678ca161407SBarry Smith send_waits = (MPI_Request*)PetscMalloc((nsends+1)*sizeof(MPI_Request));CHKPTRQ(send_waits); 16790ac07820SSatish Balay starts = (int*)PetscMalloc((size+1)*sizeof(int));CHKPTRQ(starts); 16800ac07820SSatish Balay starts[0] = 0; 16810ac07820SSatish Balay for (i=1; i<size; i++) { starts[i] = starts[i-1] + nprocs[i-1];} 16820ac07820SSatish Balay for (i=0; i<N; i++) { 16830ac07820SSatish Balay svalues[starts[owner[i]]++] = rows[i]; 16840ac07820SSatish Balay } 16856831982aSBarry Smith ierr = ISRestoreIndices(is,&rows);CHKERRQ(ierr); 16860ac07820SSatish Balay 16870ac07820SSatish Balay starts[0] = 0; 16880ac07820SSatish Balay for (i=1; i<size+1; i++) { starts[i] = starts[i-1] + nprocs[i-1];} 16890ac07820SSatish Balay count = 0; 16900ac07820SSatish Balay for (i=0; i<size; i++) { 16910ac07820SSatish Balay if (procs[i]) { 1692ca161407SBarry Smith ierr = MPI_Isend(svalues+starts[i],nprocs[i],MPI_INT,i,tag,comm,send_waits+count++);CHKERRQ(ierr); 16930ac07820SSatish Balay } 16940ac07820SSatish Balay } 1695606d414cSSatish Balay ierr = PetscFree(starts);CHKERRQ(ierr); 16960ac07820SSatish Balay 16970ac07820SSatish Balay base = owners[rank]*bs; 16980ac07820SSatish Balay 16990ac07820SSatish Balay /* wait on receives */ 17000ac07820SSatish Balay lens = (int*)PetscMalloc(2*(nrecvs+1)*sizeof(int));CHKPTRQ(lens); 17010ac07820SSatish Balay source = lens + nrecvs; 17020ac07820SSatish Balay count = nrecvs; slen = 0; 17030ac07820SSatish Balay while (count) { 1704ca161407SBarry Smith ierr = MPI_Waitany(nrecvs,recv_waits,&imdex,&recv_status);CHKERRQ(ierr); 17050ac07820SSatish Balay /* unpack receives into our local space */ 1706ca161407SBarry Smith ierr = MPI_Get_count(&recv_status,MPI_INT,&n);CHKERRQ(ierr); 17070ac07820SSatish Balay source[imdex] = recv_status.MPI_SOURCE; 17080ac07820SSatish Balay lens[imdex] = n; 17090ac07820SSatish Balay slen += n; 17100ac07820SSatish Balay count--; 17110ac07820SSatish Balay } 1712606d414cSSatish Balay ierr = PetscFree(recv_waits);CHKERRQ(ierr); 17130ac07820SSatish Balay 17140ac07820SSatish Balay /* move the data into the send scatter */ 17150ac07820SSatish Balay lrows = (int*)PetscMalloc((slen+1)*sizeof(int));CHKPTRQ(lrows); 17160ac07820SSatish Balay count = 0; 17170ac07820SSatish Balay for (i=0; i<nrecvs; i++) { 17180ac07820SSatish Balay values = rvalues + i*nmax; 17190ac07820SSatish Balay for (j=0; j<lens[i]; j++) { 17200ac07820SSatish Balay lrows[count++] = values[j] - base; 17210ac07820SSatish Balay } 17220ac07820SSatish Balay } 1723606d414cSSatish Balay ierr = PetscFree(rvalues);CHKERRQ(ierr); 1724606d414cSSatish Balay ierr = PetscFree(lens);CHKERRQ(ierr); 1725606d414cSSatish Balay ierr = PetscFree(owner);CHKERRQ(ierr); 1726606d414cSSatish Balay ierr = PetscFree(nprocs);CHKERRQ(ierr); 17270ac07820SSatish Balay 17280ac07820SSatish Balay /* actually zap the local rows */ 1729029af93fSBarry Smith ierr = ISCreateGeneral(PETSC_COMM_SELF,slen,lrows,&istmp);CHKERRQ(ierr); 17300ac07820SSatish Balay PLogObjectParent(A,istmp); 1731a07cd24cSSatish Balay 173272dacd9aSBarry Smith /* 173372dacd9aSBarry Smith Zero the required rows. If the "diagonal block" of the matrix 173472dacd9aSBarry Smith is square and the user wishes to set the diagonal we use seperate 173572dacd9aSBarry Smith code so that MatSetValues() is not called for each diagonal allocating 173672dacd9aSBarry Smith new memory, thus calling lots of mallocs and slowing things down. 173772dacd9aSBarry Smith 173872dacd9aSBarry Smith Contributed by: Mathew Knepley 173972dacd9aSBarry Smith */ 17409c957beeSSatish Balay /* must zero l->B before l->A because the (diag) case below may put values into l->B*/ 17413eda8832SBarry Smith ierr = MatZeroRows_SeqAIJ(l->B,istmp,0);CHKERRQ(ierr); 17429c957beeSSatish Balay if (diag && (l->A->M == l->A->N)) { 17433eda8832SBarry Smith ierr = MatZeroRows_SeqAIJ(l->A,istmp,diag);CHKERRQ(ierr); 17449c957beeSSatish Balay } else if (diag) { 17453eda8832SBarry Smith ierr = MatZeroRows_SeqAIJ(l->A,istmp,0);CHKERRQ(ierr); 1746fa46199cSSatish Balay if (((Mat_SeqBAIJ*)l->A->data)->nonew) { 1747fa46199cSSatish Balay SETERRQ(PETSC_ERR_SUP,0,"MatZeroRows() on rectangular matrices cannot be used with the Mat options \n\ 1748fa46199cSSatish Balay MAT_NO_NEW_NONZERO_LOCATIONS,MAT_NEW_NONZERO_LOCATION_ERR,MAT_NEW_NONZERO_ALLOCATION_ERR"); 17496525c446SSatish Balay } 1750a07cd24cSSatish Balay for (i = 0; i < slen; i++) { 1751a07cd24cSSatish Balay row = lrows[i] + rstart_bs; 17523eda8832SBarry Smith ierr = MatSetValues_MPIBAIJ(A,1,&row,1,&row,diag,INSERT_VALUES);CHKERRQ(ierr); 1753a07cd24cSSatish Balay } 1754a07cd24cSSatish Balay ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 1755a07cd24cSSatish Balay ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 17569c957beeSSatish Balay } else { 17573eda8832SBarry Smith ierr = MatZeroRows_SeqAIJ(l->A,istmp,0);CHKERRQ(ierr); 1758a07cd24cSSatish Balay } 17599c957beeSSatish Balay 17609c957beeSSatish Balay ierr = ISDestroy(istmp);CHKERRQ(ierr); 1761606d414cSSatish Balay ierr = PetscFree(lrows);CHKERRQ(ierr); 1762a07cd24cSSatish Balay 17630ac07820SSatish Balay /* wait on sends */ 17640ac07820SSatish Balay if (nsends) { 1765d64ed03dSBarry Smith send_status = (MPI_Status*)PetscMalloc(nsends*sizeof(MPI_Status));CHKPTRQ(send_status); 1766ca161407SBarry Smith ierr = MPI_Waitall(nsends,send_waits,send_status);CHKERRQ(ierr); 1767606d414cSSatish Balay ierr = PetscFree(send_status);CHKERRQ(ierr); 17680ac07820SSatish Balay } 1769606d414cSSatish Balay ierr = PetscFree(send_waits);CHKERRQ(ierr); 1770606d414cSSatish Balay ierr = PetscFree(svalues);CHKERRQ(ierr); 17710ac07820SSatish Balay 17723a40ed3dSBarry Smith PetscFunctionReturn(0); 17730ac07820SSatish Balay } 177472dacd9aSBarry Smith 17755615d1e5SSatish Balay #undef __FUNC__ 1776*b2863d3aSBarry Smith #define __FUNC__ /*<a name=""></a>*/"MatPrintHelp_MPIBAIJ" 1777ec1ea8d8SLois Curfman McInnes int MatPrintHelp_MPIBAIJ(Mat A) 1778ba4ca20aSSatish Balay { 1779ba4ca20aSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 178025fdafccSSatish Balay MPI_Comm comm = A->comm; 1781133cdb44SSatish Balay static int called = 0; 17823a40ed3dSBarry Smith int ierr; 1783ba4ca20aSSatish Balay 1784d64ed03dSBarry Smith PetscFunctionBegin; 17853a40ed3dSBarry Smith if (!a->rank) { 17863a40ed3dSBarry Smith ierr = MatPrintHelp_SeqBAIJ(a->A);CHKERRQ(ierr); 178725fdafccSSatish Balay } 178825fdafccSSatish Balay if (called) {PetscFunctionReturn(0);} else called = 1; 1789d132466eSBarry Smith ierr = (*PetscHelpPrintf)(comm," Options for MATMPIBAIJ matrix format (the defaults):\n");CHKERRQ(ierr); 1790d132466eSBarry Smith ierr = (*PetscHelpPrintf)(comm," -mat_use_hash_table <factor>: Use hashtable for efficient matrix assembly\n");CHKERRQ(ierr); 17913a40ed3dSBarry Smith PetscFunctionReturn(0); 1792ba4ca20aSSatish Balay } 17930ac07820SSatish Balay 17945615d1e5SSatish Balay #undef __FUNC__ 1795*b2863d3aSBarry Smith #define __FUNC__ /*<a name=""></a>*/"MatSetUnfactored_MPIBAIJ" 1796ec1ea8d8SLois Curfman McInnes int MatSetUnfactored_MPIBAIJ(Mat A) 1797bb5a7306SBarry Smith { 1798bb5a7306SBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1799bb5a7306SBarry Smith int ierr; 1800d64ed03dSBarry Smith 1801d64ed03dSBarry Smith PetscFunctionBegin; 1802bb5a7306SBarry Smith ierr = MatSetUnfactored(a->A);CHKERRQ(ierr); 18033a40ed3dSBarry Smith PetscFunctionReturn(0); 1804bb5a7306SBarry Smith } 1805bb5a7306SBarry Smith 18062e8a6d31SBarry Smith static int MatDuplicate_MPIBAIJ(Mat,MatDuplicateOption,Mat *); 18070ac07820SSatish Balay 18087fc3c18eSBarry Smith #undef __FUNC__ 1809*b2863d3aSBarry Smith #define __FUNC__ /*<a name=""></a>*/"MatEqual_MPIBAIJ" 18107fc3c18eSBarry Smith int MatEqual_MPIBAIJ(Mat A,Mat B,PetscTruth *flag) 18117fc3c18eSBarry Smith { 18127fc3c18eSBarry Smith Mat_MPIBAIJ *matB = (Mat_MPIBAIJ*)B->data,*matA = (Mat_MPIBAIJ*)A->data; 18137fc3c18eSBarry Smith Mat a,b,c,d; 18147fc3c18eSBarry Smith PetscTruth flg; 18157fc3c18eSBarry Smith int ierr; 18167fc3c18eSBarry Smith 18177fc3c18eSBarry Smith PetscFunctionBegin; 18187fc3c18eSBarry Smith if (B->type != MATMPIBAIJ) SETERRQ(PETSC_ERR_ARG_INCOMP,0,"Matrices must be same type"); 18197fc3c18eSBarry Smith a = matA->A; b = matA->B; 18207fc3c18eSBarry Smith c = matB->A; d = matB->B; 18217fc3c18eSBarry Smith 18227fc3c18eSBarry Smith ierr = MatEqual(a,c,&flg);CHKERRQ(ierr); 18237fc3c18eSBarry Smith if (flg == PETSC_TRUE) { 18247fc3c18eSBarry Smith ierr = MatEqual(b,d,&flg);CHKERRQ(ierr); 18257fc3c18eSBarry Smith } 18267fc3c18eSBarry Smith ierr = MPI_Allreduce(&flg,flag,1,MPI_INT,MPI_LAND,A->comm);CHKERRQ(ierr); 18277fc3c18eSBarry Smith PetscFunctionReturn(0); 18287fc3c18eSBarry Smith } 18297fc3c18eSBarry Smith 183079bdfe76SSatish Balay /* -------------------------------------------------------------------*/ 1831cc2dc46cSBarry Smith static struct _MatOps MatOps_Values = { 1832cc2dc46cSBarry Smith MatSetValues_MPIBAIJ, 1833cc2dc46cSBarry Smith MatGetRow_MPIBAIJ, 1834cc2dc46cSBarry Smith MatRestoreRow_MPIBAIJ, 1835cc2dc46cSBarry Smith MatMult_MPIBAIJ, 1836cc2dc46cSBarry Smith MatMultAdd_MPIBAIJ, 18377c922b88SBarry Smith MatMultTranspose_MPIBAIJ, 18387c922b88SBarry Smith MatMultTransposeAdd_MPIBAIJ, 1839cc2dc46cSBarry Smith 0, 1840cc2dc46cSBarry Smith 0, 1841cc2dc46cSBarry Smith 0, 1842cc2dc46cSBarry Smith 0, 1843cc2dc46cSBarry Smith 0, 1844cc2dc46cSBarry Smith 0, 1845cc2dc46cSBarry Smith 0, 1846cc2dc46cSBarry Smith MatTranspose_MPIBAIJ, 1847cc2dc46cSBarry Smith MatGetInfo_MPIBAIJ, 18487fc3c18eSBarry Smith MatEqual_MPIBAIJ, 1849cc2dc46cSBarry Smith MatGetDiagonal_MPIBAIJ, 1850cc2dc46cSBarry Smith MatDiagonalScale_MPIBAIJ, 1851cc2dc46cSBarry Smith MatNorm_MPIBAIJ, 1852cc2dc46cSBarry Smith MatAssemblyBegin_MPIBAIJ, 1853cc2dc46cSBarry Smith MatAssemblyEnd_MPIBAIJ, 1854cc2dc46cSBarry Smith 0, 1855cc2dc46cSBarry Smith MatSetOption_MPIBAIJ, 1856cc2dc46cSBarry Smith MatZeroEntries_MPIBAIJ, 1857cc2dc46cSBarry Smith MatZeroRows_MPIBAIJ, 1858cc2dc46cSBarry Smith 0, 1859cc2dc46cSBarry Smith 0, 1860cc2dc46cSBarry Smith 0, 1861cc2dc46cSBarry Smith 0, 1862cc2dc46cSBarry Smith MatGetSize_MPIBAIJ, 1863cc2dc46cSBarry Smith MatGetLocalSize_MPIBAIJ, 1864cc2dc46cSBarry Smith MatGetOwnershipRange_MPIBAIJ, 1865cc2dc46cSBarry Smith 0, 1866cc2dc46cSBarry Smith 0, 1867cc2dc46cSBarry Smith 0, 1868cc2dc46cSBarry Smith 0, 18692e8a6d31SBarry Smith MatDuplicate_MPIBAIJ, 1870cc2dc46cSBarry Smith 0, 1871cc2dc46cSBarry Smith 0, 1872cc2dc46cSBarry Smith 0, 1873cc2dc46cSBarry Smith 0, 1874cc2dc46cSBarry Smith 0, 1875cc2dc46cSBarry Smith MatGetSubMatrices_MPIBAIJ, 1876cc2dc46cSBarry Smith MatIncreaseOverlap_MPIBAIJ, 1877cc2dc46cSBarry Smith MatGetValues_MPIBAIJ, 1878cc2dc46cSBarry Smith 0, 1879cc2dc46cSBarry Smith MatPrintHelp_MPIBAIJ, 1880cc2dc46cSBarry Smith MatScale_MPIBAIJ, 1881cc2dc46cSBarry Smith 0, 1882cc2dc46cSBarry Smith 0, 1883cc2dc46cSBarry Smith 0, 1884cc2dc46cSBarry Smith MatGetBlockSize_MPIBAIJ, 1885cc2dc46cSBarry Smith 0, 1886cc2dc46cSBarry Smith 0, 1887cc2dc46cSBarry Smith 0, 1888cc2dc46cSBarry Smith 0, 1889cc2dc46cSBarry Smith 0, 1890cc2dc46cSBarry Smith 0, 1891cc2dc46cSBarry Smith MatSetUnfactored_MPIBAIJ, 1892cc2dc46cSBarry Smith 0, 1893cc2dc46cSBarry Smith MatSetValuesBlocked_MPIBAIJ, 1894cc2dc46cSBarry Smith 0, 1895cc2dc46cSBarry Smith 0, 1896cc2dc46cSBarry Smith 0, 1897cc2dc46cSBarry Smith MatGetMaps_Petsc}; 189879bdfe76SSatish Balay 18995ef9f2a5SBarry Smith 1900e18c124aSSatish Balay EXTERN_C_BEGIN 19015ef9f2a5SBarry Smith #undef __FUNC__ 1902*b2863d3aSBarry Smith #define __FUNC__ /*<a name=""></a>*/"MatGetDiagonalBlock_MPIBAIJ" 19035ef9f2a5SBarry Smith int MatGetDiagonalBlock_MPIBAIJ(Mat A,PetscTruth *iscopy,MatReuse reuse,Mat *a) 19045ef9f2a5SBarry Smith { 19055ef9f2a5SBarry Smith PetscFunctionBegin; 19065ef9f2a5SBarry Smith *a = ((Mat_MPIBAIJ *)A->data)->A; 19075ef9f2a5SBarry Smith *iscopy = PETSC_FALSE; 19085ef9f2a5SBarry Smith PetscFunctionReturn(0); 19095ef9f2a5SBarry Smith } 1910e18c124aSSatish Balay EXTERN_C_END 191179bdfe76SSatish Balay 19125615d1e5SSatish Balay #undef __FUNC__ 1913*b2863d3aSBarry Smith #define __FUNC__ /*<a name=""></a>*/"MatCreateMPIBAIJ" 191479bdfe76SSatish Balay /*@C 191579bdfe76SSatish Balay MatCreateMPIBAIJ - Creates a sparse parallel matrix in block AIJ format 191679bdfe76SSatish Balay (block compressed row). For good matrix assembly performance 191779bdfe76SSatish Balay the user should preallocate the matrix storage by setting the parameters 191879bdfe76SSatish Balay d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 191979bdfe76SSatish Balay performance can be increased by more than a factor of 50. 192079bdfe76SSatish Balay 1921db81eaa0SLois Curfman McInnes Collective on MPI_Comm 1922db81eaa0SLois Curfman McInnes 192379bdfe76SSatish Balay Input Parameters: 1924db81eaa0SLois Curfman McInnes + comm - MPI communicator 192579bdfe76SSatish Balay . bs - size of blockk 192679bdfe76SSatish Balay . m - number of local rows (or PETSC_DECIDE to have calculated if M is given) 192792e8d321SLois Curfman McInnes This value should be the same as the local size used in creating the 192892e8d321SLois Curfman McInnes y vector for the matrix-vector product y = Ax. 192992e8d321SLois Curfman McInnes . n - number of local columns (or PETSC_DECIDE to have calculated if N is given) 193092e8d321SLois Curfman McInnes This value should be the same as the local size used in creating the 193192e8d321SLois Curfman McInnes x vector for the matrix-vector product y = Ax. 1932be79a94dSBarry Smith . M - number of global rows (or PETSC_DETERMINE to have calculated if m is given) 1933be79a94dSBarry Smith . N - number of global columns (or PETSC_DETERMINE to have calculated if n is given) 193479bdfe76SSatish Balay . d_nz - number of block nonzeros per block row in diagonal portion of local 193579bdfe76SSatish Balay submatrix (same for all local rows) 19367fc3c18eSBarry Smith . d_nnz - array containing the number of block nonzeros in the various block rows 193792e8d321SLois Curfman McInnes of the in diagonal portion of the local (possibly different for each block 1938db81eaa0SLois Curfman McInnes row) or PETSC_NULL. You must leave room for the diagonal entry even if it is zero. 193992e8d321SLois Curfman McInnes . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 194079bdfe76SSatish Balay submatrix (same for all local rows). 19417fc3c18eSBarry Smith - o_nnz - array containing the number of nonzeros in the various block rows of the 194292e8d321SLois Curfman McInnes off-diagonal portion of the local submatrix (possibly different for 194392e8d321SLois Curfman McInnes each block row) or PETSC_NULL. 194479bdfe76SSatish Balay 194579bdfe76SSatish Balay Output Parameter: 194679bdfe76SSatish Balay . A - the matrix 194779bdfe76SSatish Balay 1948db81eaa0SLois Curfman McInnes Options Database Keys: 1949db81eaa0SLois Curfman McInnes . -mat_no_unroll - uses code that does not unroll the loops in the 1950db81eaa0SLois Curfman McInnes block calculations (much slower) 1951db81eaa0SLois Curfman McInnes . -mat_block_size - size of the blocks to use 1952494eafd4SBarry Smith . -mat_mpi - use the parallel matrix data structures even on one processor 1953494eafd4SBarry Smith (defaults to using SeqBAIJ format on one processor) 19543ffaccefSLois Curfman McInnes 1955b259b22eSLois Curfman McInnes Notes: 195679bdfe76SSatish Balay The user MUST specify either the local or global matrix dimensions 195779bdfe76SSatish Balay (possibly both). 195879bdfe76SSatish Balay 1959be79a94dSBarry Smith If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one processor 1960be79a94dSBarry Smith than it must be used on all processors that share the object for that argument. 1961be79a94dSBarry Smith 196279bdfe76SSatish Balay Storage Information: 196379bdfe76SSatish Balay For a square global matrix we define each processor's diagonal portion 196479bdfe76SSatish Balay to be its local rows and the corresponding columns (a square submatrix); 196579bdfe76SSatish Balay each processor's off-diagonal portion encompasses the remainder of the 196679bdfe76SSatish Balay local matrix (a rectangular submatrix). 196779bdfe76SSatish Balay 196879bdfe76SSatish Balay The user can specify preallocated storage for the diagonal part of 196979bdfe76SSatish Balay the local submatrix with either d_nz or d_nnz (not both). Set 197079bdfe76SSatish Balay d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic 197179bdfe76SSatish Balay memory allocation. Likewise, specify preallocated storage for the 197279bdfe76SSatish Balay off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 197379bdfe76SSatish Balay 197479bdfe76SSatish Balay Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 197579bdfe76SSatish Balay the figure below we depict these three local rows and all columns (0-11). 197679bdfe76SSatish Balay 1977db81eaa0SLois Curfman McInnes .vb 1978db81eaa0SLois Curfman McInnes 0 1 2 3 4 5 6 7 8 9 10 11 1979db81eaa0SLois Curfman McInnes ------------------- 1980db81eaa0SLois Curfman McInnes row 3 | o o o d d d o o o o o o 1981db81eaa0SLois Curfman McInnes row 4 | o o o d d d o o o o o o 1982db81eaa0SLois Curfman McInnes row 5 | o o o d d d o o o o o o 1983db81eaa0SLois Curfman McInnes ------------------- 1984db81eaa0SLois Curfman McInnes .ve 198579bdfe76SSatish Balay 198679bdfe76SSatish Balay Thus, any entries in the d locations are stored in the d (diagonal) 198779bdfe76SSatish Balay submatrix, and any entries in the o locations are stored in the 198879bdfe76SSatish Balay o (off-diagonal) submatrix. Note that the d and the o submatrices are 198957b952d6SSatish Balay stored simply in the MATSEQBAIJ format for compressed row storage. 199079bdfe76SSatish Balay 1991d64ed03dSBarry Smith Now d_nz should indicate the number of block nonzeros per row in the d matrix, 1992d64ed03dSBarry Smith and o_nz should indicate the number of block nonzeros per row in the o matrix. 199379bdfe76SSatish Balay In general, for PDE problems in which most nonzeros are near the diagonal, 199492e8d321SLois Curfman McInnes one expects d_nz >> o_nz. For large problems you MUST preallocate memory 199592e8d321SLois Curfman McInnes or you will get TERRIBLE performance; see the users' manual chapter on 19966da5968aSLois Curfman McInnes matrices. 199779bdfe76SSatish Balay 1998027ccd11SLois Curfman McInnes Level: intermediate 1999027ccd11SLois Curfman McInnes 200092e8d321SLois Curfman McInnes .keywords: matrix, block, aij, compressed row, sparse, parallel 200179bdfe76SSatish Balay 20023eda8832SBarry Smith .seealso: MatCreate(), MatCreateSeqBAIJ(), MatSetValues(), MatCreateMPIBAIJ() 200379bdfe76SSatish Balay @*/ 2004329f5518SBarry Smith int MatCreateMPIBAIJ(MPI_Comm comm,int bs,int m,int n,int M,int N,int d_nz,int *d_nnz,int o_nz,int *o_nnz,Mat *A) 200579bdfe76SSatish Balay { 200679bdfe76SSatish Balay Mat B; 200779bdfe76SSatish Balay Mat_MPIBAIJ *b; 2008f1af5d2fSBarry Smith int ierr,i,sum[2],work[2],mbs,nbs,Mbs=PETSC_DECIDE,Nbs=PETSC_DECIDE,size; 2009f1af5d2fSBarry Smith PetscTruth flag1,flag2,flg; 201079bdfe76SSatish Balay 2011d64ed03dSBarry Smith PetscFunctionBegin; 2012962fb4a0SBarry Smith ierr = OptionsGetInt(PETSC_NULL,"-mat_block_size",&bs,PETSC_NULL);CHKERRQ(ierr); 2013962fb4a0SBarry Smith 2014a8c6a408SBarry Smith if (bs < 1) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Invalid block size specified, must be positive"); 201536c4a09eSSatish Balay if (d_nz < -2) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,0,"d_nz cannot be less than -1: value %d",d_nz); 201636c4a09eSSatish Balay if (o_nz < -2) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,0,"o_nz cannot be less than -1: value %d",o_nz); 20174fdb0a08SBarry Smith if (d_nnz) { 201836c4a09eSSatish Balay for (i=0; i<m/bs; i++) { 20194fdb0a08SBarry Smith if (d_nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,0,"d_nnz cannot be less than -1: local row %d value %d",i,d_nnz[i]); 20204fdb0a08SBarry Smith } 20214fdb0a08SBarry Smith } 20224fdb0a08SBarry Smith if (o_nnz) { 202336c4a09eSSatish Balay for (i=0; i<m/bs; i++) { 20244fdb0a08SBarry Smith if (o_nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,0,"o_nnz cannot be less than -1: local row %d value %d",i,o_nnz[i]); 20254fdb0a08SBarry Smith } 20264fdb0a08SBarry Smith } 20273914022bSBarry Smith 2028d132466eSBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 2029494eafd4SBarry Smith ierr = OptionsHasName(PETSC_NULL,"-mat_mpibaij",&flag1);CHKERRQ(ierr); 2030494eafd4SBarry Smith ierr = OptionsHasName(PETSC_NULL,"-mat_mpi",&flag2);CHKERRQ(ierr); 2031494eafd4SBarry Smith if (!flag1 && !flag2 && size == 1) { 20323914022bSBarry Smith if (M == PETSC_DECIDE) M = m; 20333914022bSBarry Smith if (N == PETSC_DECIDE) N = n; 20343914022bSBarry Smith ierr = MatCreateSeqBAIJ(comm,bs,M,N,d_nz,d_nnz,A);CHKERRQ(ierr); 20353a40ed3dSBarry Smith PetscFunctionReturn(0); 20363914022bSBarry Smith } 20373914022bSBarry Smith 203879bdfe76SSatish Balay *A = 0; 20393f1db9ecSBarry Smith PetscHeaderCreate(B,_p_Mat,struct _MatOps,MAT_COOKIE,MATMPIBAIJ,"Mat",comm,MatDestroy,MatView); 204079bdfe76SSatish Balay PLogObjectCreate(B); 204179bdfe76SSatish Balay B->data = (void*)(b = PetscNew(Mat_MPIBAIJ));CHKPTRQ(b); 2042549d3d68SSatish Balay ierr = PetscMemzero(b,sizeof(Mat_MPIBAIJ));CHKERRQ(ierr); 2043549d3d68SSatish Balay ierr = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr); 20444c50302cSBarry Smith 2045e1311b90SBarry Smith B->ops->destroy = MatDestroy_MPIBAIJ; 2046e1311b90SBarry Smith B->ops->view = MatView_MPIBAIJ; 204790f02eecSBarry Smith B->mapping = 0; 204879bdfe76SSatish Balay B->factor = 0; 204979bdfe76SSatish Balay B->assembled = PETSC_FALSE; 205079bdfe76SSatish Balay 2051e0fa3b82SLois Curfman McInnes B->insertmode = NOT_SET_VALUES; 2052d132466eSBarry Smith ierr = MPI_Comm_rank(comm,&b->rank);CHKERRQ(ierr); 2053d132466eSBarry Smith ierr = MPI_Comm_size(comm,&b->size);CHKERRQ(ierr); 205479bdfe76SSatish Balay 20557c922b88SBarry Smith if (m == PETSC_DECIDE && (d_nnz || o_nnz)) { 2056a8c6a408SBarry Smith SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Cannot have PETSC_DECIDE rows but set d_nnz or o_nnz"); 2057d64ed03dSBarry Smith } 2058a8c6a408SBarry Smith if (M == PETSC_DECIDE && m == PETSC_DECIDE) { 2059a8c6a408SBarry Smith SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"either M or m should be specified"); 2060a8c6a408SBarry Smith } 2061a8c6a408SBarry Smith if (N == PETSC_DECIDE && n == PETSC_DECIDE) { 2062a8c6a408SBarry Smith SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"either N or n should be specified"); 2063a8c6a408SBarry Smith } 2064cee3aa6bSSatish Balay if (M != PETSC_DECIDE && m != PETSC_DECIDE) M = PETSC_DECIDE; 2065cee3aa6bSSatish Balay if (N != PETSC_DECIDE && n != PETSC_DECIDE) N = PETSC_DECIDE; 206679bdfe76SSatish Balay 206779bdfe76SSatish Balay if (M == PETSC_DECIDE || N == PETSC_DECIDE) { 206879bdfe76SSatish Balay work[0] = m; work[1] = n; 206979bdfe76SSatish Balay mbs = m/bs; nbs = n/bs; 2070ca161407SBarry Smith ierr = MPI_Allreduce(work,sum,2,MPI_INT,MPI_SUM,comm);CHKERRQ(ierr); 207179bdfe76SSatish Balay if (M == PETSC_DECIDE) {M = sum[0]; Mbs = M/bs;} 207279bdfe76SSatish Balay if (N == PETSC_DECIDE) {N = sum[1]; Nbs = N/bs;} 207379bdfe76SSatish Balay } 207479bdfe76SSatish Balay if (m == PETSC_DECIDE) { 207579bdfe76SSatish Balay Mbs = M/bs; 2076a8c6a408SBarry Smith if (Mbs*bs != M) SETERRQ(PETSC_ERR_ARG_SIZ,0,"No of global rows must be divisible by blocksize"); 207779bdfe76SSatish Balay mbs = Mbs/b->size + ((Mbs % b->size) > b->rank); 207879bdfe76SSatish Balay m = mbs*bs; 207979bdfe76SSatish Balay } 208079bdfe76SSatish Balay if (n == PETSC_DECIDE) { 208179bdfe76SSatish Balay Nbs = N/bs; 2082a8c6a408SBarry Smith if (Nbs*bs != N) SETERRQ(PETSC_ERR_ARG_SIZ,0,"No of global cols must be divisible by blocksize"); 208379bdfe76SSatish Balay nbs = Nbs/b->size + ((Nbs % b->size) > b->rank); 208479bdfe76SSatish Balay n = nbs*bs; 208579bdfe76SSatish Balay } 2086a8c6a408SBarry Smith if (mbs*bs != m || nbs*bs != n) { 2087a8c6a408SBarry Smith SETERRQ(PETSC_ERR_ARG_SIZ,0,"No of local rows, cols must be divisible by blocksize"); 2088a8c6a408SBarry Smith } 208979bdfe76SSatish Balay 209079bdfe76SSatish Balay b->m = m; B->m = m; 209179bdfe76SSatish Balay b->n = n; B->n = n; 209279bdfe76SSatish Balay b->N = N; B->N = N; 209379bdfe76SSatish Balay b->M = M; B->M = M; 209479bdfe76SSatish Balay b->bs = bs; 209579bdfe76SSatish Balay b->bs2 = bs*bs; 209679bdfe76SSatish Balay b->mbs = mbs; 209779bdfe76SSatish Balay b->nbs = nbs; 209879bdfe76SSatish Balay b->Mbs = Mbs; 209979bdfe76SSatish Balay b->Nbs = Nbs; 210079bdfe76SSatish Balay 2101c7fcc2eaSBarry Smith /* the information in the maps duplicates the information computed below, eventually 2102c7fcc2eaSBarry Smith we should remove the duplicate information that is not contained in the maps */ 2103488ecbafSBarry Smith ierr = MapCreateMPI(comm,m,M,&B->rmap);CHKERRQ(ierr); 2104488ecbafSBarry Smith ierr = MapCreateMPI(comm,n,N,&B->cmap);CHKERRQ(ierr); 2105c7fcc2eaSBarry Smith 210679bdfe76SSatish Balay /* build local table of row and column ownerships */ 2107ff2fd236SBarry Smith b->rowners = (int*)PetscMalloc(3*(b->size+2)*sizeof(int));CHKPTRQ(b->rowners); 2108ff2fd236SBarry Smith PLogObjectMemory(B,3*(b->size+2)*sizeof(int)+sizeof(struct _p_Mat)+sizeof(Mat_MPIBAIJ)); 21090ac07820SSatish Balay b->cowners = b->rowners + b->size + 2; 2110ff2fd236SBarry Smith b->rowners_bs = b->cowners + b->size + 2; 2111ca161407SBarry Smith ierr = MPI_Allgather(&mbs,1,MPI_INT,b->rowners+1,1,MPI_INT,comm);CHKERRQ(ierr); 211279bdfe76SSatish Balay b->rowners[0] = 0; 211379bdfe76SSatish Balay for (i=2; i<=b->size; i++) { 211479bdfe76SSatish Balay b->rowners[i] += b->rowners[i-1]; 211579bdfe76SSatish Balay } 2116ff2fd236SBarry Smith for (i=0; i<=b->size; i++) { 2117ff2fd236SBarry Smith b->rowners_bs[i] = b->rowners[i]*bs; 2118ff2fd236SBarry Smith } 211979bdfe76SSatish Balay b->rstart = b->rowners[b->rank]; 212079bdfe76SSatish Balay b->rend = b->rowners[b->rank+1]; 21214fa0d573SSatish Balay b->rstart_bs = b->rstart * bs; 21224fa0d573SSatish Balay b->rend_bs = b->rend * bs; 21234fa0d573SSatish Balay 2124ca161407SBarry Smith ierr = MPI_Allgather(&nbs,1,MPI_INT,b->cowners+1,1,MPI_INT,comm);CHKERRQ(ierr); 212579bdfe76SSatish Balay b->cowners[0] = 0; 212679bdfe76SSatish Balay for (i=2; i<=b->size; i++) { 212779bdfe76SSatish Balay b->cowners[i] += b->cowners[i-1]; 212879bdfe76SSatish Balay } 212979bdfe76SSatish Balay b->cstart = b->cowners[b->rank]; 213079bdfe76SSatish Balay b->cend = b->cowners[b->rank+1]; 21314fa0d573SSatish Balay b->cstart_bs = b->cstart * bs; 21324fa0d573SSatish Balay b->cend_bs = b->cend * bs; 213379bdfe76SSatish Balay 2134a07cd24cSSatish Balay 213579bdfe76SSatish Balay if (d_nz == PETSC_DEFAULT) d_nz = 5; 2136029af93fSBarry Smith ierr = MatCreateSeqBAIJ(PETSC_COMM_SELF,bs,m,n,d_nz,d_nnz,&b->A);CHKERRQ(ierr); 213779bdfe76SSatish Balay PLogObjectParent(B,b->A); 213879bdfe76SSatish Balay if (o_nz == PETSC_DEFAULT) o_nz = 0; 2139029af93fSBarry Smith ierr = MatCreateSeqBAIJ(PETSC_COMM_SELF,bs,m,N,o_nz,o_nnz,&b->B);CHKERRQ(ierr); 214079bdfe76SSatish Balay PLogObjectParent(B,b->B); 214179bdfe76SSatish Balay 214279bdfe76SSatish Balay /* build cache for off array entries formed */ 21438798bf22SSatish Balay ierr = MatStashCreate_Private(comm,1,&B->stash);CHKERRQ(ierr); 21448798bf22SSatish Balay ierr = MatStashCreate_Private(comm,bs,&B->bstash);CHKERRQ(ierr); 21457c922b88SBarry Smith b->donotstash = PETSC_FALSE; 21467c922b88SBarry Smith b->colmap = PETSC_NULL; 21477c922b88SBarry Smith b->garray = PETSC_NULL; 21487c922b88SBarry Smith b->roworiented = PETSC_TRUE; 214979bdfe76SSatish Balay 215030793edcSSatish Balay /* stuff used in block assembly */ 215130793edcSSatish Balay b->barray = 0; 215230793edcSSatish Balay 215379bdfe76SSatish Balay /* stuff used for matrix vector multiply */ 215479bdfe76SSatish Balay b->lvec = 0; 215579bdfe76SSatish Balay b->Mvctx = 0; 215679bdfe76SSatish Balay 215779bdfe76SSatish Balay /* stuff for MatGetRow() */ 215879bdfe76SSatish Balay b->rowindices = 0; 215979bdfe76SSatish Balay b->rowvalues = 0; 216079bdfe76SSatish Balay b->getrowactive = PETSC_FALSE; 216179bdfe76SSatish Balay 2162a07cd24cSSatish Balay /* hash table stuff */ 2163a07cd24cSSatish Balay b->ht = 0; 2164187ce0cbSSatish Balay b->hd = 0; 21650bdbc534SSatish Balay b->ht_size = 0; 21667c922b88SBarry Smith b->ht_flag = PETSC_FALSE; 216725fdafccSSatish Balay b->ht_fact = 0; 2168187ce0cbSSatish Balay b->ht_total_ct = 0; 2169187ce0cbSSatish Balay b->ht_insert_ct = 0; 2170a07cd24cSSatish Balay 217179bdfe76SSatish Balay *A = B; 2172133cdb44SSatish Balay ierr = OptionsHasName(PETSC_NULL,"-mat_use_hash_table",&flg);CHKERRQ(ierr); 2173133cdb44SSatish Balay if (flg) { 2174133cdb44SSatish Balay double fact = 1.39; 2175133cdb44SSatish Balay ierr = MatSetOption(B,MAT_USE_HASH_TABLE);CHKERRQ(ierr); 2176f1af5d2fSBarry Smith ierr = OptionsGetDouble(PETSC_NULL,"-mat_use_hash_table",&fact,PETSC_NULL);CHKERRQ(ierr); 2177133cdb44SSatish Balay if (fact <= 1.0) fact = 1.39; 2178133cdb44SSatish Balay ierr = MatMPIBAIJSetHashTableFactor(B,fact);CHKERRQ(ierr); 2179133cdb44SSatish Balay PLogInfo(0,"MatCreateMPIBAIJ:Hash table Factor used %5.2f\n",fact); 2180133cdb44SSatish Balay } 2181f1af5d2fSBarry Smith ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatStoreValues_C", 21827fc3c18eSBarry Smith "MatStoreValues_MPIBAIJ", 21837fc3c18eSBarry Smith (void*)MatStoreValues_MPIBAIJ);CHKERRQ(ierr); 2184f1af5d2fSBarry Smith ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatRetrieveValues_C", 21857fc3c18eSBarry Smith "MatRetrieveValues_MPIBAIJ", 21867fc3c18eSBarry Smith (void*)MatRetrieveValues_MPIBAIJ);CHKERRQ(ierr); 2187f1af5d2fSBarry Smith ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetDiagonalBlock_C", 21885ef9f2a5SBarry Smith "MatGetDiagonalBlock_MPIBAIJ", 21895ef9f2a5SBarry Smith (void*)MatGetDiagonalBlock_MPIBAIJ);CHKERRQ(ierr); 21903a40ed3dSBarry Smith PetscFunctionReturn(0); 219179bdfe76SSatish Balay } 2192026e39d0SSatish Balay 21935615d1e5SSatish Balay #undef __FUNC__ 2194*b2863d3aSBarry Smith #define __FUNC__ /*<a name=""></a>*/"MatDuplicate_MPIBAIJ" 21952e8a6d31SBarry Smith static int MatDuplicate_MPIBAIJ(Mat matin,MatDuplicateOption cpvalues,Mat *newmat) 21960ac07820SSatish Balay { 21970ac07820SSatish Balay Mat mat; 21980ac07820SSatish Balay Mat_MPIBAIJ *a,*oldmat = (Mat_MPIBAIJ*)matin->data; 2199f1af5d2fSBarry Smith int ierr,len=0; 2200f1af5d2fSBarry Smith PetscTruth flg; 22010ac07820SSatish Balay 2202d64ed03dSBarry Smith PetscFunctionBegin; 22030ac07820SSatish Balay *newmat = 0; 22043f1db9ecSBarry Smith PetscHeaderCreate(mat,_p_Mat,struct _MatOps,MAT_COOKIE,MATMPIBAIJ,"Mat",matin->comm,MatDestroy,MatView); 22050ac07820SSatish Balay PLogObjectCreate(mat); 22060ac07820SSatish Balay mat->data = (void*)(a = PetscNew(Mat_MPIBAIJ));CHKPTRQ(a); 2207549d3d68SSatish Balay ierr = PetscMemcpy(mat->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr); 2208e1311b90SBarry Smith mat->ops->destroy = MatDestroy_MPIBAIJ; 2209e1311b90SBarry Smith mat->ops->view = MatView_MPIBAIJ; 22100ac07820SSatish Balay mat->factor = matin->factor; 22110ac07820SSatish Balay mat->assembled = PETSC_TRUE; 2212aef5e8e0SSatish Balay mat->insertmode = NOT_SET_VALUES; 22130ac07820SSatish Balay 22140ac07820SSatish Balay a->m = mat->m = oldmat->m; 22150ac07820SSatish Balay a->n = mat->n = oldmat->n; 22160ac07820SSatish Balay a->M = mat->M = oldmat->M; 22170ac07820SSatish Balay a->N = mat->N = oldmat->N; 22180ac07820SSatish Balay 22190ac07820SSatish Balay a->bs = oldmat->bs; 22200ac07820SSatish Balay a->bs2 = oldmat->bs2; 22210ac07820SSatish Balay a->mbs = oldmat->mbs; 22220ac07820SSatish Balay a->nbs = oldmat->nbs; 22230ac07820SSatish Balay a->Mbs = oldmat->Mbs; 22240ac07820SSatish Balay a->Nbs = oldmat->Nbs; 22250ac07820SSatish Balay 22260ac07820SSatish Balay a->rstart = oldmat->rstart; 22270ac07820SSatish Balay a->rend = oldmat->rend; 22280ac07820SSatish Balay a->cstart = oldmat->cstart; 22290ac07820SSatish Balay a->cend = oldmat->cend; 22300ac07820SSatish Balay a->size = oldmat->size; 22310ac07820SSatish Balay a->rank = oldmat->rank; 2232aef5e8e0SSatish Balay a->donotstash = oldmat->donotstash; 2233aef5e8e0SSatish Balay a->roworiented = oldmat->roworiented; 2234aef5e8e0SSatish Balay a->rowindices = 0; 22350ac07820SSatish Balay a->rowvalues = 0; 22360ac07820SSatish Balay a->getrowactive = PETSC_FALSE; 223730793edcSSatish Balay a->barray = 0; 22383123a43fSSatish Balay a->rstart_bs = oldmat->rstart_bs; 22393123a43fSSatish Balay a->rend_bs = oldmat->rend_bs; 22403123a43fSSatish Balay a->cstart_bs = oldmat->cstart_bs; 22413123a43fSSatish Balay a->cend_bs = oldmat->cend_bs; 22420ac07820SSatish Balay 2243133cdb44SSatish Balay /* hash table stuff */ 2244133cdb44SSatish Balay a->ht = 0; 2245133cdb44SSatish Balay a->hd = 0; 2246133cdb44SSatish Balay a->ht_size = 0; 2247133cdb44SSatish Balay a->ht_flag = oldmat->ht_flag; 224825fdafccSSatish Balay a->ht_fact = oldmat->ht_fact; 2249133cdb44SSatish Balay a->ht_total_ct = 0; 2250133cdb44SSatish Balay a->ht_insert_ct = 0; 2251133cdb44SSatish Balay 2252133cdb44SSatish Balay 2253ff2fd236SBarry Smith a->rowners = (int*)PetscMalloc(3*(a->size+2)*sizeof(int));CHKPTRQ(a->rowners); 2254ff2fd236SBarry Smith PLogObjectMemory(mat,3*(a->size+2)*sizeof(int)+sizeof(struct _p_Mat)+sizeof(Mat_MPIBAIJ)); 22550ac07820SSatish Balay a->cowners = a->rowners + a->size + 2; 2256ff2fd236SBarry Smith a->rowners_bs = a->cowners + a->size + 2; 2257549d3d68SSatish Balay ierr = PetscMemcpy(a->rowners,oldmat->rowners,3*(a->size+2)*sizeof(int));CHKERRQ(ierr); 22588798bf22SSatish Balay ierr = MatStashCreate_Private(matin->comm,1,&mat->stash);CHKERRQ(ierr); 22598798bf22SSatish Balay ierr = MatStashCreate_Private(matin->comm,oldmat->bs,&mat->bstash);CHKERRQ(ierr); 22600ac07820SSatish Balay if (oldmat->colmap) { 2261aa482453SBarry Smith #if defined (PETSC_USE_CTABLE) 22620f5bd95cSBarry Smith ierr = PetscTableCreateCopy(oldmat->colmap,&a->colmap);CHKERRQ(ierr); 226348e59246SSatish Balay #else 22640ac07820SSatish Balay a->colmap = (int*)PetscMalloc((a->Nbs)*sizeof(int));CHKPTRQ(a->colmap); 22650ac07820SSatish Balay PLogObjectMemory(mat,(a->Nbs)*sizeof(int)); 2266549d3d68SSatish Balay ierr = PetscMemcpy(a->colmap,oldmat->colmap,(a->Nbs)*sizeof(int));CHKERRQ(ierr); 226748e59246SSatish Balay #endif 22680ac07820SSatish Balay } else a->colmap = 0; 22690ac07820SSatish Balay if (oldmat->garray && (len = ((Mat_SeqBAIJ*)(oldmat->B->data))->nbs)) { 22700ac07820SSatish Balay a->garray = (int*)PetscMalloc(len*sizeof(int));CHKPTRQ(a->garray); 22710ac07820SSatish Balay PLogObjectMemory(mat,len*sizeof(int)); 2272549d3d68SSatish Balay ierr = PetscMemcpy(a->garray,oldmat->garray,len*sizeof(int));CHKERRQ(ierr); 22730ac07820SSatish Balay } else a->garray = 0; 22740ac07820SSatish Balay 22750ac07820SSatish Balay ierr = VecDuplicate(oldmat->lvec,&a->lvec);CHKERRQ(ierr); 22760ac07820SSatish Balay PLogObjectParent(mat,a->lvec); 22770ac07820SSatish Balay ierr = VecScatterCopy(oldmat->Mvctx,&a->Mvctx);CHKERRQ(ierr); 2278e18c124aSSatish Balay 22790ac07820SSatish Balay PLogObjectParent(mat,a->Mvctx); 22802e8a6d31SBarry Smith ierr = MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr); 22810ac07820SSatish Balay PLogObjectParent(mat,a->A); 22822e8a6d31SBarry Smith ierr = MatDuplicate(oldmat->B,cpvalues,&a->B);CHKERRQ(ierr); 22830ac07820SSatish Balay PLogObjectParent(mat,a->B); 22840ac07820SSatish Balay ierr = OptionsHasName(PETSC_NULL,"-help",&flg);CHKERRQ(ierr); 2285e18c124aSSatish Balay ierr = FListDuplicate(mat->qlist,&matin->qlist);CHKERRQ(ierr); 22860ac07820SSatish Balay if (flg) { 22870ac07820SSatish Balay ierr = MatPrintHelp(mat);CHKERRQ(ierr); 22880ac07820SSatish Balay } 22890ac07820SSatish Balay *newmat = mat; 22903a40ed3dSBarry Smith PetscFunctionReturn(0); 22910ac07820SSatish Balay } 229257b952d6SSatish Balay 229357b952d6SSatish Balay #include "sys.h" 229457b952d6SSatish Balay 22955615d1e5SSatish Balay #undef __FUNC__ 2296*b2863d3aSBarry Smith #define __FUNC__ /*<a name=""></a>*/"MatLoad_MPIBAIJ" 229757b952d6SSatish Balay int MatLoad_MPIBAIJ(Viewer viewer,MatType type,Mat *newmat) 229857b952d6SSatish Balay { 229957b952d6SSatish Balay Mat A; 230057b952d6SSatish Balay int i,nz,ierr,j,rstart,rend,fd; 230157b952d6SSatish Balay Scalar *vals,*buf; 230257b952d6SSatish Balay MPI_Comm comm = ((PetscObject)viewer)->comm; 230357b952d6SSatish Balay MPI_Status status; 2304cee3aa6bSSatish Balay int header[4],rank,size,*rowlengths = 0,M,N,m,*rowners,*browners,maxnz,*cols; 230557b952d6SSatish Balay int *locrowlens,*sndcounts = 0,*procsnz = 0,jj,*mycols,*ibuf; 2306f1af5d2fSBarry Smith int tag = ((PetscObject)viewer)->tag,bs=1,Mbs,mbs,extra_rows; 230757b952d6SSatish Balay int *dlens,*odlens,*mask,*masked1,*masked2,rowcount,odcount; 230857b952d6SSatish Balay int dcount,kmax,k,nzcount,tmp; 230957b952d6SSatish Balay 2310d64ed03dSBarry Smith PetscFunctionBegin; 2311f1af5d2fSBarry Smith ierr = OptionsGetInt(PETSC_NULL,"-matload_block_size",&bs,PETSC_NULL);CHKERRQ(ierr); 231257b952d6SSatish Balay 2313d132466eSBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 2314d132466eSBarry Smith ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 231557b952d6SSatish Balay if (!rank) { 231657b952d6SSatish Balay ierr = ViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr); 2317e5638eb3SBarry Smith ierr = PetscBinaryRead(fd,(char *)header,4,PETSC_INT);CHKERRQ(ierr); 2318a8c6a408SBarry Smith if (header[0] != MAT_COOKIE) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,0,"not matrix object"); 2319d64ed03dSBarry Smith if (header[3] < 0) { 2320a8c6a408SBarry Smith SETERRQ(PETSC_ERR_FILE_UNEXPECTED,1,"Matrix stored in special format, cannot load as MPIBAIJ"); 2321d64ed03dSBarry Smith } 23226c5fab8fSBarry Smith } 2323d64ed03dSBarry Smith 2324ca161407SBarry Smith ierr = MPI_Bcast(header+1,3,MPI_INT,0,comm);CHKERRQ(ierr); 232557b952d6SSatish Balay M = header[1]; N = header[2]; 232657b952d6SSatish Balay 2327a8c6a408SBarry Smith if (M != N) SETERRQ(PETSC_ERR_SUP,0,"Can only do square matrices"); 232857b952d6SSatish Balay 232957b952d6SSatish Balay /* 233057b952d6SSatish Balay This code adds extra rows to make sure the number of rows is 233157b952d6SSatish Balay divisible by the blocksize 233257b952d6SSatish Balay */ 233357b952d6SSatish Balay Mbs = M/bs; 233457b952d6SSatish Balay extra_rows = bs - M + bs*(Mbs); 233557b952d6SSatish Balay if (extra_rows == bs) extra_rows = 0; 233657b952d6SSatish Balay else Mbs++; 233757b952d6SSatish Balay if (extra_rows &&!rank) { 2338b0267e0aSLois Curfman McInnes PLogInfo(0,"MatLoad_MPIBAIJ:Padding loaded matrix to match blocksize\n"); 233957b952d6SSatish Balay } 2340537820f0SBarry Smith 234157b952d6SSatish Balay /* determine ownership of all rows */ 234257b952d6SSatish Balay mbs = Mbs/size + ((Mbs % size) > rank); 234357b952d6SSatish Balay m = mbs * bs; 2344cee3aa6bSSatish Balay rowners = (int*)PetscMalloc(2*(size+2)*sizeof(int));CHKPTRQ(rowners); 2345cee3aa6bSSatish Balay browners = rowners + size + 1; 2346ca161407SBarry Smith ierr = MPI_Allgather(&mbs,1,MPI_INT,rowners+1,1,MPI_INT,comm);CHKERRQ(ierr); 234757b952d6SSatish Balay rowners[0] = 0; 2348cee3aa6bSSatish Balay for (i=2; i<=size; i++) rowners[i] += rowners[i-1]; 2349cee3aa6bSSatish Balay for (i=0; i<=size; i++) browners[i] = rowners[i]*bs; 235057b952d6SSatish Balay rstart = rowners[rank]; 235157b952d6SSatish Balay rend = rowners[rank+1]; 235257b952d6SSatish Balay 235357b952d6SSatish Balay /* distribute row lengths to all processors */ 235457b952d6SSatish Balay locrowlens = (int*)PetscMalloc((rend-rstart)*bs*sizeof(int));CHKPTRQ(locrowlens); 235557b952d6SSatish Balay if (!rank) { 235657b952d6SSatish Balay rowlengths = (int*)PetscMalloc((M+extra_rows)*sizeof(int));CHKPTRQ(rowlengths); 2357e5638eb3SBarry Smith ierr = PetscBinaryRead(fd,rowlengths,M,PETSC_INT);CHKERRQ(ierr); 235857b952d6SSatish Balay for (i=0; i<extra_rows; i++) rowlengths[M+i] = 1; 235957b952d6SSatish Balay sndcounts = (int*)PetscMalloc(size*sizeof(int));CHKPTRQ(sndcounts); 2360cee3aa6bSSatish Balay for (i=0; i<size; i++) sndcounts[i] = browners[i+1] - browners[i]; 2361ca161407SBarry Smith ierr = MPI_Scatterv(rowlengths,sndcounts,browners,MPI_INT,locrowlens,(rend-rstart)*bs,MPI_INT,0,comm);CHKERRQ(ierr); 2362606d414cSSatish Balay ierr = PetscFree(sndcounts);CHKERRQ(ierr); 2363d64ed03dSBarry Smith } else { 2364ca161407SBarry Smith ierr = MPI_Scatterv(0,0,0,MPI_INT,locrowlens,(rend-rstart)*bs,MPI_INT,0,comm);CHKERRQ(ierr); 236557b952d6SSatish Balay } 236657b952d6SSatish Balay 236757b952d6SSatish Balay if (!rank) { 236857b952d6SSatish Balay /* calculate the number of nonzeros on each processor */ 236957b952d6SSatish Balay procsnz = (int*)PetscMalloc(size*sizeof(int));CHKPTRQ(procsnz); 2370549d3d68SSatish Balay ierr = PetscMemzero(procsnz,size*sizeof(int));CHKERRQ(ierr); 237157b952d6SSatish Balay for (i=0; i<size; i++) { 237257b952d6SSatish Balay for (j=rowners[i]*bs; j< rowners[i+1]*bs; j++) { 237357b952d6SSatish Balay procsnz[i] += rowlengths[j]; 237457b952d6SSatish Balay } 237557b952d6SSatish Balay } 2376606d414cSSatish Balay ierr = PetscFree(rowlengths);CHKERRQ(ierr); 237757b952d6SSatish Balay 237857b952d6SSatish Balay /* determine max buffer needed and allocate it */ 237957b952d6SSatish Balay maxnz = 0; 238057b952d6SSatish Balay for (i=0; i<size; i++) { 238157b952d6SSatish Balay maxnz = PetscMax(maxnz,procsnz[i]); 238257b952d6SSatish Balay } 238357b952d6SSatish Balay cols = (int*)PetscMalloc(maxnz*sizeof(int));CHKPTRQ(cols); 238457b952d6SSatish Balay 238557b952d6SSatish Balay /* read in my part of the matrix column indices */ 238657b952d6SSatish Balay nz = procsnz[0]; 238757b952d6SSatish Balay ibuf = (int*)PetscMalloc(nz*sizeof(int));CHKPTRQ(ibuf); 238857b952d6SSatish Balay mycols = ibuf; 2389cee3aa6bSSatish Balay if (size == 1) nz -= extra_rows; 2390e5638eb3SBarry Smith ierr = PetscBinaryRead(fd,mycols,nz,PETSC_INT);CHKERRQ(ierr); 2391cee3aa6bSSatish Balay if (size == 1) for (i=0; i< extra_rows; i++) { mycols[nz+i] = M+i; } 2392cee3aa6bSSatish Balay 239357b952d6SSatish Balay /* read in every ones (except the last) and ship off */ 239457b952d6SSatish Balay for (i=1; i<size-1; i++) { 239557b952d6SSatish Balay nz = procsnz[i]; 2396e5638eb3SBarry Smith ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr); 2397ca161407SBarry Smith ierr = MPI_Send(cols,nz,MPI_INT,i,tag,comm);CHKERRQ(ierr); 239857b952d6SSatish Balay } 239957b952d6SSatish Balay /* read in the stuff for the last proc */ 240057b952d6SSatish Balay if (size != 1) { 240157b952d6SSatish Balay nz = procsnz[size-1] - extra_rows; /* the extra rows are not on the disk */ 2402e5638eb3SBarry Smith ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr); 240357b952d6SSatish Balay for (i=0; i<extra_rows; i++) cols[nz+i] = M+i; 2404ca161407SBarry Smith ierr = MPI_Send(cols,nz+extra_rows,MPI_INT,size-1,tag,comm);CHKERRQ(ierr); 240557b952d6SSatish Balay } 2406606d414cSSatish Balay ierr = PetscFree(cols);CHKERRQ(ierr); 2407d64ed03dSBarry Smith } else { 240857b952d6SSatish Balay /* determine buffer space needed for message */ 240957b952d6SSatish Balay nz = 0; 241057b952d6SSatish Balay for (i=0; i<m; i++) { 241157b952d6SSatish Balay nz += locrowlens[i]; 241257b952d6SSatish Balay } 241357b952d6SSatish Balay ibuf = (int*)PetscMalloc(nz*sizeof(int));CHKPTRQ(ibuf); 241457b952d6SSatish Balay mycols = ibuf; 241557b952d6SSatish Balay /* receive message of column indices*/ 2416ca161407SBarry Smith ierr = MPI_Recv(mycols,nz,MPI_INT,0,tag,comm,&status);CHKERRQ(ierr); 2417ca161407SBarry Smith ierr = MPI_Get_count(&status,MPI_INT,&maxnz);CHKERRQ(ierr); 2418a8c6a408SBarry Smith if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,0,"something is wrong with file"); 241957b952d6SSatish Balay } 242057b952d6SSatish Balay 242157b952d6SSatish Balay /* loop over local rows, determining number of off diagonal entries */ 2422cee3aa6bSSatish Balay dlens = (int*)PetscMalloc(2*(rend-rstart+1)*sizeof(int));CHKPTRQ(dlens); 2423cee3aa6bSSatish Balay odlens = dlens + (rend-rstart); 242457b952d6SSatish Balay mask = (int*)PetscMalloc(3*Mbs*sizeof(int));CHKPTRQ(mask); 2425549d3d68SSatish Balay ierr = PetscMemzero(mask,3*Mbs*sizeof(int));CHKERRQ(ierr); 242657b952d6SSatish Balay masked1 = mask + Mbs; 242757b952d6SSatish Balay masked2 = masked1 + Mbs; 242857b952d6SSatish Balay rowcount = 0; nzcount = 0; 242957b952d6SSatish Balay for (i=0; i<mbs; i++) { 243057b952d6SSatish Balay dcount = 0; 243157b952d6SSatish Balay odcount = 0; 243257b952d6SSatish Balay for (j=0; j<bs; j++) { 243357b952d6SSatish Balay kmax = locrowlens[rowcount]; 243457b952d6SSatish Balay for (k=0; k<kmax; k++) { 243557b952d6SSatish Balay tmp = mycols[nzcount++]/bs; 243657b952d6SSatish Balay if (!mask[tmp]) { 243757b952d6SSatish Balay mask[tmp] = 1; 243857b952d6SSatish Balay if (tmp < rstart || tmp >= rend) masked2[odcount++] = tmp; 243957b952d6SSatish Balay else masked1[dcount++] = tmp; 244057b952d6SSatish Balay } 244157b952d6SSatish Balay } 244257b952d6SSatish Balay rowcount++; 244357b952d6SSatish Balay } 2444cee3aa6bSSatish Balay 244557b952d6SSatish Balay dlens[i] = dcount; 244657b952d6SSatish Balay odlens[i] = odcount; 2447cee3aa6bSSatish Balay 244857b952d6SSatish Balay /* zero out the mask elements we set */ 244957b952d6SSatish Balay for (j=0; j<dcount; j++) mask[masked1[j]] = 0; 245057b952d6SSatish Balay for (j=0; j<odcount; j++) mask[masked2[j]] = 0; 245157b952d6SSatish Balay } 2452cee3aa6bSSatish Balay 245357b952d6SSatish Balay /* create our matrix */ 2454549d3d68SSatish Balay ierr = MatCreateMPIBAIJ(comm,bs,m,PETSC_DECIDE,M+extra_rows,N+extra_rows,0,dlens,0,odlens,newmat);CHKERRQ(ierr); 245557b952d6SSatish Balay A = *newmat; 24566d4a8577SBarry Smith MatSetOption(A,MAT_COLUMNS_SORTED); 245757b952d6SSatish Balay 245857b952d6SSatish Balay if (!rank) { 245957b952d6SSatish Balay buf = (Scalar*)PetscMalloc(maxnz*sizeof(Scalar));CHKPTRQ(buf); 246057b952d6SSatish Balay /* read in my part of the matrix numerical values */ 246157b952d6SSatish Balay nz = procsnz[0]; 246257b952d6SSatish Balay vals = buf; 2463cee3aa6bSSatish Balay mycols = ibuf; 2464cee3aa6bSSatish Balay if (size == 1) nz -= extra_rows; 2465e5638eb3SBarry Smith ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 2466cee3aa6bSSatish Balay if (size == 1) for (i=0; i< extra_rows; i++) { vals[nz+i] = 1.0; } 2467537820f0SBarry Smith 246857b952d6SSatish Balay /* insert into matrix */ 246957b952d6SSatish Balay jj = rstart*bs; 247057b952d6SSatish Balay for (i=0; i<m; i++) { 24713eda8832SBarry Smith ierr = MatSetValues_MPIBAIJ(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr); 247257b952d6SSatish Balay mycols += locrowlens[i]; 247357b952d6SSatish Balay vals += locrowlens[i]; 247457b952d6SSatish Balay jj++; 247557b952d6SSatish Balay } 247657b952d6SSatish Balay /* read in other processors (except the last one) and ship out */ 247757b952d6SSatish Balay for (i=1; i<size-1; i++) { 247857b952d6SSatish Balay nz = procsnz[i]; 247957b952d6SSatish Balay vals = buf; 2480e5638eb3SBarry Smith ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 2481ca161407SBarry Smith ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,A->tag,comm);CHKERRQ(ierr); 248257b952d6SSatish Balay } 248357b952d6SSatish Balay /* the last proc */ 248457b952d6SSatish Balay if (size != 1){ 248557b952d6SSatish Balay nz = procsnz[i] - extra_rows; 2486cee3aa6bSSatish Balay vals = buf; 2487e5638eb3SBarry Smith ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 248857b952d6SSatish Balay for (i=0; i<extra_rows; i++) vals[nz+i] = 1.0; 2489ca161407SBarry Smith ierr = MPI_Send(vals,nz+extra_rows,MPIU_SCALAR,size-1,A->tag,comm);CHKERRQ(ierr); 249057b952d6SSatish Balay } 2491606d414cSSatish Balay ierr = PetscFree(procsnz);CHKERRQ(ierr); 2492d64ed03dSBarry Smith } else { 249357b952d6SSatish Balay /* receive numeric values */ 249457b952d6SSatish Balay buf = (Scalar*)PetscMalloc(nz*sizeof(Scalar));CHKPTRQ(buf); 249557b952d6SSatish Balay 249657b952d6SSatish Balay /* receive message of values*/ 249757b952d6SSatish Balay vals = buf; 2498cee3aa6bSSatish Balay mycols = ibuf; 2499ca161407SBarry Smith ierr = MPI_Recv(vals,nz,MPIU_SCALAR,0,A->tag,comm,&status);CHKERRQ(ierr); 2500ca161407SBarry Smith ierr = MPI_Get_count(&status,MPIU_SCALAR,&maxnz);CHKERRQ(ierr); 2501a8c6a408SBarry Smith if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,0,"something is wrong with file"); 250257b952d6SSatish Balay 250357b952d6SSatish Balay /* insert into matrix */ 250457b952d6SSatish Balay jj = rstart*bs; 2505cee3aa6bSSatish Balay for (i=0; i<m; i++) { 25063eda8832SBarry Smith ierr = MatSetValues_MPIBAIJ(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr); 250757b952d6SSatish Balay mycols += locrowlens[i]; 250857b952d6SSatish Balay vals += locrowlens[i]; 250957b952d6SSatish Balay jj++; 251057b952d6SSatish Balay } 251157b952d6SSatish Balay } 2512606d414cSSatish Balay ierr = PetscFree(locrowlens);CHKERRQ(ierr); 2513606d414cSSatish Balay ierr = PetscFree(buf);CHKERRQ(ierr); 2514606d414cSSatish Balay ierr = PetscFree(ibuf);CHKERRQ(ierr); 2515606d414cSSatish Balay ierr = PetscFree(rowners);CHKERRQ(ierr); 2516606d414cSSatish Balay ierr = PetscFree(dlens);CHKERRQ(ierr); 2517606d414cSSatish Balay ierr = PetscFree(mask);CHKERRQ(ierr); 25186d4a8577SBarry Smith ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 25196d4a8577SBarry Smith ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 25203a40ed3dSBarry Smith PetscFunctionReturn(0); 252157b952d6SSatish Balay } 252257b952d6SSatish Balay 2523133cdb44SSatish Balay #undef __FUNC__ 2524*b2863d3aSBarry Smith #define __FUNC__ /*<a name=""></a>*/"MatMPIBAIJSetHashTableFactor" 2525133cdb44SSatish Balay /*@ 2526133cdb44SSatish Balay MatMPIBAIJSetHashTableFactor - Sets the factor required to compute the size of the HashTable. 2527133cdb44SSatish Balay 2528133cdb44SSatish Balay Input Parameters: 2529133cdb44SSatish Balay . mat - the matrix 2530133cdb44SSatish Balay . fact - factor 2531133cdb44SSatish Balay 2532fee21e36SBarry Smith Collective on Mat 2533fee21e36SBarry Smith 25348c890885SBarry Smith Level: advanced 25358c890885SBarry Smith 2536133cdb44SSatish Balay Notes: 2537133cdb44SSatish Balay This can also be set by the command line option: -mat_use_hash_table fact 2538133cdb44SSatish Balay 2539133cdb44SSatish Balay .keywords: matrix, hashtable, factor, HT 2540133cdb44SSatish Balay 2541133cdb44SSatish Balay .seealso: MatSetOption() 2542133cdb44SSatish Balay @*/ 2543329f5518SBarry Smith int MatMPIBAIJSetHashTableFactor(Mat mat,PetscReal fact) 2544133cdb44SSatish Balay { 254525fdafccSSatish Balay Mat_MPIBAIJ *baij; 2546133cdb44SSatish Balay 2547133cdb44SSatish Balay PetscFunctionBegin; 2548133cdb44SSatish Balay PetscValidHeaderSpecific(mat,MAT_COOKIE); 254925fdafccSSatish Balay if (mat->type != MATMPIBAIJ) { 2550133cdb44SSatish Balay SETERRQ(PETSC_ERR_ARG_WRONG,1,"Incorrect matrix type. Use MPIBAIJ only."); 2551133cdb44SSatish Balay } 2552133cdb44SSatish Balay baij = (Mat_MPIBAIJ*)mat->data; 2553133cdb44SSatish Balay baij->ht_fact = fact; 2554133cdb44SSatish Balay PetscFunctionReturn(0); 2555133cdb44SSatish Balay } 2556