1c6db04a5SJed Brown #include <../src/mat/impls/baij/mpi/mpibaij.h> /*I "petscmat.h" I*/ 2c5d9258eSSatish Balay 3b51a4376SLisandro Dalcin #include <petsc/private/hashseti.h> 4c6db04a5SJed Brown #include <petscblaslapack.h> 565a92638SMatthew G. Knepley #include <petscsf.h> 679bdfe76SSatish Balay 766976f2fSJacob Faibussowitsch static PetscErrorCode MatDestroy_MPIBAIJ(Mat mat) 826cec326SBarry Smith { 926cec326SBarry Smith Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 1026cec326SBarry Smith 1126cec326SBarry Smith PetscFunctionBegin; 1226cec326SBarry Smith PetscCall(PetscLogObjectState((PetscObject)mat, "Rows=%" PetscInt_FMT ",Cols=%" PetscInt_FMT, mat->rmap->N, mat->cmap->N)); 1326cec326SBarry Smith PetscCall(MatStashDestroy_Private(&mat->stash)); 1426cec326SBarry Smith PetscCall(MatStashDestroy_Private(&mat->bstash)); 1526cec326SBarry Smith PetscCall(MatDestroy(&baij->A)); 1626cec326SBarry Smith PetscCall(MatDestroy(&baij->B)); 1726cec326SBarry Smith #if defined(PETSC_USE_CTABLE) 1826cec326SBarry Smith PetscCall(PetscHMapIDestroy(&baij->colmap)); 1926cec326SBarry Smith #else 2026cec326SBarry Smith PetscCall(PetscFree(baij->colmap)); 2126cec326SBarry Smith #endif 2226cec326SBarry Smith PetscCall(PetscFree(baij->garray)); 2326cec326SBarry Smith PetscCall(VecDestroy(&baij->lvec)); 2426cec326SBarry Smith PetscCall(VecScatterDestroy(&baij->Mvctx)); 2526cec326SBarry Smith PetscCall(PetscFree2(baij->rowvalues, baij->rowindices)); 2626cec326SBarry Smith PetscCall(PetscFree(baij->barray)); 2726cec326SBarry Smith PetscCall(PetscFree2(baij->hd, baij->ht)); 2826cec326SBarry Smith PetscCall(PetscFree(baij->rangebs)); 2926cec326SBarry Smith PetscCall(PetscFree(mat->data)); 3026cec326SBarry Smith 3126cec326SBarry Smith PetscCall(PetscObjectChangeTypeName((PetscObject)mat, NULL)); 3226cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatStoreValues_C", NULL)); 3326cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatRetrieveValues_C", NULL)); 3426cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMPIBAIJSetPreallocation_C", NULL)); 3526cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMPIBAIJSetPreallocationCSR_C", NULL)); 3626cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDiagonalScaleLocal_C", NULL)); 3726cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatSetHashTableFactor_C", NULL)); 3826cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpibaij_mpisbaij_C", NULL)); 3926cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpibaij_mpiadj_C", NULL)); 4026cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpibaij_mpiaij_C", NULL)); 4126cec326SBarry Smith #if defined(PETSC_HAVE_HYPRE) 4226cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpibaij_hypre_C", NULL)); 4326cec326SBarry Smith #endif 4426cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpibaij_is_C", NULL)); 4526cec326SBarry Smith PetscFunctionReturn(PETSC_SUCCESS); 4626cec326SBarry Smith } 4726cec326SBarry Smith 4826cec326SBarry Smith /* defines MatSetValues_MPI_Hash(), MatAssemblyBegin_MPI_Hash(), and MatAssemblyEnd_MPI_Hash() */ 4926cec326SBarry Smith #define TYPE BAIJ 5026cec326SBarry Smith #include "../src/mat/impls/aij/mpi/mpihashmat.h" 5126cec326SBarry Smith #undef TYPE 5226cec326SBarry Smith 537ea3e4caSstefano_zampini #if defined(PETSC_HAVE_HYPRE) 547ea3e4caSstefano_zampini PETSC_INTERN PetscErrorCode MatConvert_AIJ_HYPRE(Mat, MatType, MatReuse, Mat *); 557ea3e4caSstefano_zampini #endif 567ea3e4caSstefano_zampini 5766976f2fSJacob Faibussowitsch static PetscErrorCode MatGetRowMaxAbs_MPIBAIJ(Mat A, Vec v, PetscInt idx[]) 58d71ae5a4SJacob Faibussowitsch { 597843d17aSBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 604e879edeSHong Zhang PetscInt i, *idxb = NULL, m = A->rmap->n, bs = A->cmap->bs; 614e879edeSHong Zhang PetscScalar *va, *vv; 624e879edeSHong Zhang Vec vB, vA; 634e879edeSHong Zhang const PetscScalar *vb; 647843d17aSBarry Smith 657843d17aSBarry Smith PetscFunctionBegin; 669566063dSJacob Faibussowitsch PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &vA)); 679566063dSJacob Faibussowitsch PetscCall(MatGetRowMaxAbs(a->A, vA, idx)); 684e879edeSHong Zhang 699566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(vA, &va)); 70985db425SBarry Smith if (idx) { 714e879edeSHong Zhang for (i = 0; i < m; i++) { 7226fbe8dcSKarl Rupp if (PetscAbsScalar(va[i])) idx[i] += A->cmap->rstart; 7326fbe8dcSKarl Rupp } 74985db425SBarry Smith } 757843d17aSBarry Smith 769566063dSJacob Faibussowitsch PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &vB)); 779566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m, &idxb)); 789566063dSJacob Faibussowitsch PetscCall(MatGetRowMaxAbs(a->B, vB, idxb)); 797843d17aSBarry Smith 809566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(v, &vv)); 819566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(vB, &vb)); 824e879edeSHong Zhang for (i = 0; i < m; i++) { 8326fbe8dcSKarl Rupp if (PetscAbsScalar(va[i]) < PetscAbsScalar(vb[i])) { 844e879edeSHong Zhang vv[i] = vb[i]; 854e879edeSHong Zhang if (idx) idx[i] = bs * a->garray[idxb[i] / bs] + (idxb[i] % bs); 864e879edeSHong Zhang } else { 874e879edeSHong Zhang vv[i] = va[i]; 889371c9d4SSatish Balay if (idx && PetscAbsScalar(va[i]) == PetscAbsScalar(vb[i]) && idxb[i] != -1 && idx[i] > bs * a->garray[idxb[i] / bs] + (idxb[i] % bs)) idx[i] = bs * a->garray[idxb[i] / bs] + (idxb[i] % bs); 8926fbe8dcSKarl Rupp } 907843d17aSBarry Smith } 919566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(vA, &vv)); 929566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(vA, &va)); 939566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(vB, &vb)); 949566063dSJacob Faibussowitsch PetscCall(PetscFree(idxb)); 959566063dSJacob Faibussowitsch PetscCall(VecDestroy(&vA)); 969566063dSJacob Faibussowitsch PetscCall(VecDestroy(&vB)); 973ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 987843d17aSBarry Smith } 997843d17aSBarry Smith 10066976f2fSJacob Faibussowitsch static PetscErrorCode MatStoreValues_MPIBAIJ(Mat mat) 101d71ae5a4SJacob Faibussowitsch { 1027fc3c18eSBarry Smith Mat_MPIBAIJ *aij = (Mat_MPIBAIJ *)mat->data; 1037fc3c18eSBarry Smith 1047fc3c18eSBarry Smith PetscFunctionBegin; 1059566063dSJacob Faibussowitsch PetscCall(MatStoreValues(aij->A)); 1069566063dSJacob Faibussowitsch PetscCall(MatStoreValues(aij->B)); 1073ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1087fc3c18eSBarry Smith } 1097fc3c18eSBarry Smith 11066976f2fSJacob Faibussowitsch static PetscErrorCode MatRetrieveValues_MPIBAIJ(Mat mat) 111d71ae5a4SJacob Faibussowitsch { 1127fc3c18eSBarry Smith Mat_MPIBAIJ *aij = (Mat_MPIBAIJ *)mat->data; 1137fc3c18eSBarry Smith 1147fc3c18eSBarry Smith PetscFunctionBegin; 1159566063dSJacob Faibussowitsch PetscCall(MatRetrieveValues(aij->A)); 1169566063dSJacob Faibussowitsch PetscCall(MatRetrieveValues(aij->B)); 1173ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1187fc3c18eSBarry Smith } 1197fc3c18eSBarry Smith 120537820f0SBarry Smith /* 121537820f0SBarry Smith Local utility routine that creates a mapping from the global column 12257b952d6SSatish Balay number to the local number in the off-diagonal part of the local 123e06f6af7SJed Brown storage of the matrix. This is done in a non scalable way since the 12457b952d6SSatish Balay length of colmap equals the global matrix length. 12557b952d6SSatish Balay */ 126d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateColmap_MPIBAIJ_Private(Mat mat) 127d71ae5a4SJacob Faibussowitsch { 12857b952d6SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 12957b952d6SSatish Balay Mat_SeqBAIJ *B = (Mat_SeqBAIJ *)baij->B->data; 130d0f46423SBarry Smith PetscInt nbs = B->nbs, i, bs = mat->rmap->bs; 13157b952d6SSatish Balay 132d64ed03dSBarry Smith PetscFunctionBegin; 133aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 134eec179cfSJacob Faibussowitsch PetscCall(PetscHMapICreateWithSize(baij->nbs, &baij->colmap)); 135c76ffc5fSJacob Faibussowitsch for (i = 0; i < nbs; i++) PetscCall(PetscHMapISet(baij->colmap, baij->garray[i] + 1, i * bs + 1)); 13648e59246SSatish Balay #else 1379566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(baij->Nbs + 1, &baij->colmap)); 138928fc39bSSatish Balay for (i = 0; i < nbs; i++) baij->colmap[baij->garray[i]] = i * bs + 1; 13948e59246SSatish Balay #endif 1403ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 14157b952d6SSatish Balay } 14257b952d6SSatish Balay 143d40312a9SBarry Smith #define MatSetValues_SeqBAIJ_A_Private(row, col, value, addv, orow, ocol) \ 144a8f51744SPierre Jolivet do { \ 14580c1aa95SSatish Balay brow = row / bs; \ 1468e3a54c0SPierre Jolivet rp = PetscSafePointerPlusOffset(aj, ai[brow]); \ 1478e3a54c0SPierre Jolivet ap = PetscSafePointerPlusOffset(aa, bs2 * ai[brow]); \ 1489371c9d4SSatish Balay rmax = aimax[brow]; \ 1499371c9d4SSatish Balay nrow = ailen[brow]; \ 15080c1aa95SSatish Balay bcol = col / bs; \ 1519371c9d4SSatish Balay ridx = row % bs; \ 1529371c9d4SSatish Balay cidx = col % bs; \ 1539371c9d4SSatish Balay low = 0; \ 1549371c9d4SSatish Balay high = nrow; \ 155ab26458aSBarry Smith while (high - low > 3) { \ 156ab26458aSBarry Smith t = (low + high) / 2; \ 157ab26458aSBarry Smith if (rp[t] > bcol) high = t; \ 158ab26458aSBarry Smith else low = t; \ 159ab26458aSBarry Smith } \ 160ab26458aSBarry Smith for (_i = low; _i < high; _i++) { \ 16180c1aa95SSatish Balay if (rp[_i] > bcol) break; \ 16280c1aa95SSatish Balay if (rp[_i] == bcol) { \ 16380c1aa95SSatish Balay bap = ap + bs2 * _i + bs * cidx + ridx; \ 164eada6651SSatish Balay if (addv == ADD_VALUES) *bap += value; \ 165eada6651SSatish Balay else *bap = value; \ 166ac7a638eSSatish Balay goto a_noinsert; \ 16780c1aa95SSatish Balay } \ 16880c1aa95SSatish Balay } \ 16989280ab3SLois Curfman McInnes if (a->nonew == 1) goto a_noinsert; \ 1705f80ce2aSJacob Faibussowitsch PetscCheck(a->nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", orow, ocol); \ 171fef13f97SBarry Smith MatSeqXAIJReallocateAIJ(A, a->mbs, bs2, nrow, brow, bcol, rmax, aa, ai, aj, rp, ap, aimax, a->nonew, MatScalar); \ 17280c1aa95SSatish Balay N = nrow++ - 1; \ 17380c1aa95SSatish Balay /* shift up all the later entries in this row */ \ 1749566063dSJacob Faibussowitsch PetscCall(PetscArraymove(rp + _i + 1, rp + _i, N - _i + 1)); \ 1759566063dSJacob Faibussowitsch PetscCall(PetscArraymove(ap + bs2 * (_i + 1), ap + bs2 * _i, bs2 * (N - _i + 1))); \ 1769566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(ap + bs2 * _i, bs2)); \ 17780c1aa95SSatish Balay rp[_i] = bcol; \ 17880c1aa95SSatish Balay ap[bs2 * _i + bs * cidx + ridx] = value; \ 179ac7a638eSSatish Balay a_noinsert:; \ 18080c1aa95SSatish Balay ailen[brow] = nrow; \ 181a8f51744SPierre Jolivet } while (0) 18257b952d6SSatish Balay 183d40312a9SBarry Smith #define MatSetValues_SeqBAIJ_B_Private(row, col, value, addv, orow, ocol) \ 184a8f51744SPierre Jolivet do { \ 185ac7a638eSSatish Balay brow = row / bs; \ 1868e3a54c0SPierre Jolivet rp = PetscSafePointerPlusOffset(bj, bi[brow]); \ 1878e3a54c0SPierre Jolivet ap = PetscSafePointerPlusOffset(ba, bs2 * bi[brow]); \ 1889371c9d4SSatish Balay rmax = bimax[brow]; \ 1899371c9d4SSatish Balay nrow = bilen[brow]; \ 190ac7a638eSSatish Balay bcol = col / bs; \ 1919371c9d4SSatish Balay ridx = row % bs; \ 1929371c9d4SSatish Balay cidx = col % bs; \ 1939371c9d4SSatish Balay low = 0; \ 1949371c9d4SSatish Balay high = nrow; \ 195ac7a638eSSatish Balay while (high - low > 3) { \ 196ac7a638eSSatish Balay t = (low + high) / 2; \ 197ac7a638eSSatish Balay if (rp[t] > bcol) high = t; \ 198ac7a638eSSatish Balay else low = t; \ 199ac7a638eSSatish Balay } \ 200ac7a638eSSatish Balay for (_i = low; _i < high; _i++) { \ 201ac7a638eSSatish Balay if (rp[_i] > bcol) break; \ 202ac7a638eSSatish Balay if (rp[_i] == bcol) { \ 203ac7a638eSSatish Balay bap = ap + bs2 * _i + bs * cidx + ridx; \ 204ac7a638eSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 205ac7a638eSSatish Balay else *bap = value; \ 206ac7a638eSSatish Balay goto b_noinsert; \ 207ac7a638eSSatish Balay } \ 208ac7a638eSSatish Balay } \ 20989280ab3SLois Curfman McInnes if (b->nonew == 1) goto b_noinsert; \ 2105f80ce2aSJacob Faibussowitsch PetscCheck(b->nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", orow, ocol); \ 211fef13f97SBarry Smith MatSeqXAIJReallocateAIJ(B, b->mbs, bs2, nrow, brow, bcol, rmax, ba, bi, bj, rp, ap, bimax, b->nonew, MatScalar); \ 212ac7a638eSSatish Balay N = nrow++ - 1; \ 213ac7a638eSSatish Balay /* shift up all the later entries in this row */ \ 2149566063dSJacob Faibussowitsch PetscCall(PetscArraymove(rp + _i + 1, rp + _i, N - _i + 1)); \ 2159566063dSJacob Faibussowitsch PetscCall(PetscArraymove(ap + bs2 * (_i + 1), ap + bs2 * _i, bs2 * (N - _i + 1))); \ 2169566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(ap + bs2 * _i, bs2)); \ 217ac7a638eSSatish Balay rp[_i] = bcol; \ 218ac7a638eSSatish Balay ap[bs2 * _i + bs * cidx + ridx] = value; \ 219ac7a638eSSatish Balay b_noinsert:; \ 220ac7a638eSSatish Balay bilen[brow] = nrow; \ 221a8f51744SPierre Jolivet } while (0) 222ac7a638eSSatish Balay 223d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetValues_MPIBAIJ(Mat mat, PetscInt m, const PetscInt im[], PetscInt n, const PetscInt in[], const PetscScalar v[], InsertMode addv) 224d71ae5a4SJacob Faibussowitsch { 22557b952d6SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 22693fea6afSBarry Smith MatScalar value; 227ace3abfcSBarry Smith PetscBool roworiented = baij->roworiented; 228b24ad042SBarry Smith PetscInt i, j, row, col; 229d0f46423SBarry Smith PetscInt rstart_orig = mat->rmap->rstart; 230d0f46423SBarry Smith PetscInt rend_orig = mat->rmap->rend, cstart_orig = mat->cmap->rstart; 231d0f46423SBarry Smith PetscInt cend_orig = mat->cmap->rend, bs = mat->rmap->bs; 23257b952d6SSatish Balay 233eada6651SSatish Balay /* Some Variables required in the macro */ 23480c1aa95SSatish Balay Mat A = baij->A; 23580c1aa95SSatish Balay Mat_SeqBAIJ *a = (Mat_SeqBAIJ *)(A)->data; 236b24ad042SBarry Smith PetscInt *aimax = a->imax, *ai = a->i, *ailen = a->ilen, *aj = a->j; 2373eda8832SBarry Smith MatScalar *aa = a->a; 238ac7a638eSSatish Balay 239ac7a638eSSatish Balay Mat B = baij->B; 240ac7a638eSSatish Balay Mat_SeqBAIJ *b = (Mat_SeqBAIJ *)(B)->data; 241b24ad042SBarry Smith PetscInt *bimax = b->imax, *bi = b->i, *bilen = b->ilen, *bj = b->j; 2423eda8832SBarry Smith MatScalar *ba = b->a; 243ac7a638eSSatish Balay 244b24ad042SBarry Smith PetscInt *rp, ii, nrow, _i, rmax, N, brow, bcol; 245b24ad042SBarry Smith PetscInt low, high, t, ridx, cidx, bs2 = a->bs2; 2463eda8832SBarry Smith MatScalar *ap, *bap; 24780c1aa95SSatish Balay 248d64ed03dSBarry Smith PetscFunctionBegin; 24957b952d6SSatish Balay for (i = 0; i < m; i++) { 2505ef9f2a5SBarry Smith if (im[i] < 0) continue; 2515f80ce2aSJacob Faibussowitsch PetscCheck(im[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, im[i], mat->rmap->N - 1); 25257b952d6SSatish Balay if (im[i] >= rstart_orig && im[i] < rend_orig) { 25357b952d6SSatish Balay row = im[i] - rstart_orig; 25457b952d6SSatish Balay for (j = 0; j < n; j++) { 25557b952d6SSatish Balay if (in[j] >= cstart_orig && in[j] < cend_orig) { 25657b952d6SSatish Balay col = in[j] - cstart_orig; 257db4deed7SKarl Rupp if (roworiented) value = v[i * n + j]; 258db4deed7SKarl Rupp else value = v[i + j * m]; 259d40312a9SBarry Smith MatSetValues_SeqBAIJ_A_Private(row, col, value, addv, im[i], in[j]); 260f7d195e4SLawrence Mitchell } else if (in[j] < 0) { 261f7d195e4SLawrence Mitchell continue; 262f7d195e4SLawrence Mitchell } else { 263f7d195e4SLawrence Mitchell PetscCheck(in[j] < mat->cmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, in[j], mat->cmap->N - 1); 26457b952d6SSatish Balay if (mat->was_assembled) { 26548a46eb9SPierre Jolivet if (!baij->colmap) PetscCall(MatCreateColmap_MPIBAIJ_Private(mat)); 266aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 267eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIGetWithDefault(baij->colmap, in[j] / bs + 1, 0, &col)); 268bba1ac68SSatish Balay col = col - 1; 26948e59246SSatish Balay #else 270bba1ac68SSatish Balay col = baij->colmap[in[j] / bs] - 1; 27148e59246SSatish Balay #endif 272f4f49eeaSPierre Jolivet if (col < 0 && !((Mat_SeqBAIJ *)baij->B->data)->nonew) { 2739566063dSJacob Faibussowitsch PetscCall(MatDisAssemble_MPIBAIJ(mat)); 2748295de27SSatish Balay col = in[j]; 2759bf004c3SSatish Balay /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */ 2769bf004c3SSatish Balay B = baij->B; 2779bf004c3SSatish Balay b = (Mat_SeqBAIJ *)(B)->data; 2789371c9d4SSatish Balay bimax = b->imax; 2799371c9d4SSatish Balay bi = b->i; 2809371c9d4SSatish Balay bilen = b->ilen; 2819371c9d4SSatish Balay bj = b->j; 2829bf004c3SSatish Balay ba = b->a; 283f7d195e4SLawrence Mitchell } else { 284f7d195e4SLawrence Mitchell PetscCheck(col >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", im[i], in[j]); 285f7d195e4SLawrence Mitchell col += in[j] % bs; 286f7d195e4SLawrence Mitchell } 2878295de27SSatish Balay } else col = in[j]; 288db4deed7SKarl Rupp if (roworiented) value = v[i * n + j]; 289db4deed7SKarl Rupp else value = v[i + j * m]; 290d40312a9SBarry Smith MatSetValues_SeqBAIJ_B_Private(row, col, value, addv, im[i], in[j]); 2919566063dSJacob Faibussowitsch /* PetscCall(MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv)); */ 29257b952d6SSatish Balay } 29357b952d6SSatish Balay } 294d64ed03dSBarry Smith } else { 2955f80ce2aSJacob Faibussowitsch PetscCheck(!mat->nooffprocentries, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Setting off process row %" PetscInt_FMT " even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set", im[i]); 29690f02eecSBarry Smith if (!baij->donotstash) { 2975080c13bSMatthew G Knepley mat->assembled = PETSC_FALSE; 298ff2fd236SBarry Smith if (roworiented) { 2999566063dSJacob Faibussowitsch PetscCall(MatStashValuesRow_Private(&mat->stash, im[i], n, in, v + i * n, PETSC_FALSE)); 300ff2fd236SBarry Smith } else { 3019566063dSJacob Faibussowitsch PetscCall(MatStashValuesCol_Private(&mat->stash, im[i], n, in, v + i, m, PETSC_FALSE)); 30257b952d6SSatish Balay } 30357b952d6SSatish Balay } 30457b952d6SSatish Balay } 30590f02eecSBarry Smith } 3063ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 30757b952d6SSatish Balay } 30857b952d6SSatish Balay 309d71ae5a4SJacob Faibussowitsch static inline PetscErrorCode MatSetValuesBlocked_SeqBAIJ_Inlined(Mat A, PetscInt row, PetscInt col, const PetscScalar v[], InsertMode is, PetscInt orow, PetscInt ocol) 310d71ae5a4SJacob Faibussowitsch { 311880c6e6aSBarry Smith Mat_SeqBAIJ *a = (Mat_SeqBAIJ *)A->data; 3128ab52850SBarry Smith PetscInt *rp, low, high, t, ii, jj, nrow, i, rmax, N; 313880c6e6aSBarry Smith PetscInt *imax = a->imax, *ai = a->i, *ailen = a->ilen; 3148ab52850SBarry Smith PetscInt *aj = a->j, nonew = a->nonew, bs2 = a->bs2, bs = A->rmap->bs; 315880c6e6aSBarry Smith PetscBool roworiented = a->roworiented; 316880c6e6aSBarry Smith const PetscScalar *value = v; 317880c6e6aSBarry Smith MatScalar *ap, *aa = a->a, *bap; 318880c6e6aSBarry Smith 319880c6e6aSBarry Smith PetscFunctionBegin; 320880c6e6aSBarry Smith rp = aj + ai[row]; 321880c6e6aSBarry Smith ap = aa + bs2 * ai[row]; 322880c6e6aSBarry Smith rmax = imax[row]; 323880c6e6aSBarry Smith nrow = ailen[row]; 3248ab52850SBarry Smith value = v; 3258ab52850SBarry Smith low = 0; 3268ab52850SBarry Smith high = nrow; 327880c6e6aSBarry Smith while (high - low > 7) { 328880c6e6aSBarry Smith t = (low + high) / 2; 329880c6e6aSBarry Smith if (rp[t] > col) high = t; 330880c6e6aSBarry Smith else low = t; 331880c6e6aSBarry Smith } 332880c6e6aSBarry Smith for (i = low; i < high; i++) { 333880c6e6aSBarry Smith if (rp[i] > col) break; 334880c6e6aSBarry Smith if (rp[i] == col) { 335880c6e6aSBarry Smith bap = ap + bs2 * i; 336880c6e6aSBarry Smith if (roworiented) { 337880c6e6aSBarry Smith if (is == ADD_VALUES) { 3388ab52850SBarry Smith for (ii = 0; ii < bs; ii++) { 339ad540459SPierre Jolivet for (jj = ii; jj < bs2; jj += bs) bap[jj] += *value++; 340880c6e6aSBarry Smith } 341880c6e6aSBarry Smith } else { 3428ab52850SBarry Smith for (ii = 0; ii < bs; ii++) { 343ad540459SPierre Jolivet for (jj = ii; jj < bs2; jj += bs) bap[jj] = *value++; 344880c6e6aSBarry Smith } 345880c6e6aSBarry Smith } 346880c6e6aSBarry Smith } else { 347880c6e6aSBarry Smith if (is == ADD_VALUES) { 3488ab52850SBarry Smith for (ii = 0; ii < bs; ii++, value += bs) { 349ad540459SPierre Jolivet for (jj = 0; jj < bs; jj++) bap[jj] += value[jj]; 350880c6e6aSBarry Smith bap += bs; 351880c6e6aSBarry Smith } 352880c6e6aSBarry Smith } else { 3538ab52850SBarry Smith for (ii = 0; ii < bs; ii++, value += bs) { 354ad540459SPierre Jolivet for (jj = 0; jj < bs; jj++) bap[jj] = value[jj]; 355880c6e6aSBarry Smith bap += bs; 356880c6e6aSBarry Smith } 357880c6e6aSBarry Smith } 358880c6e6aSBarry Smith } 359880c6e6aSBarry Smith goto noinsert2; 360880c6e6aSBarry Smith } 361880c6e6aSBarry Smith } 362880c6e6aSBarry Smith if (nonew == 1) goto noinsert2; 3635f80ce2aSJacob Faibussowitsch PetscCheck(nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new global block indexed nonzero block (%" PetscInt_FMT ", %" PetscInt_FMT ") in the matrix", orow, ocol); 364880c6e6aSBarry Smith MatSeqXAIJReallocateAIJ(A, a->mbs, bs2, nrow, row, col, rmax, aa, ai, aj, rp, ap, imax, nonew, MatScalar); 3659371c9d4SSatish Balay N = nrow++ - 1; 3669371c9d4SSatish Balay high++; 367880c6e6aSBarry Smith /* shift up all the later entries in this row */ 3689566063dSJacob Faibussowitsch PetscCall(PetscArraymove(rp + i + 1, rp + i, N - i + 1)); 3699566063dSJacob Faibussowitsch PetscCall(PetscArraymove(ap + bs2 * (i + 1), ap + bs2 * i, bs2 * (N - i + 1))); 370880c6e6aSBarry Smith rp[i] = col; 371880c6e6aSBarry Smith bap = ap + bs2 * i; 372880c6e6aSBarry Smith if (roworiented) { 3738ab52850SBarry Smith for (ii = 0; ii < bs; ii++) { 374ad540459SPierre Jolivet for (jj = ii; jj < bs2; jj += bs) bap[jj] = *value++; 375880c6e6aSBarry Smith } 376880c6e6aSBarry Smith } else { 3778ab52850SBarry Smith for (ii = 0; ii < bs; ii++) { 378ad540459SPierre Jolivet for (jj = 0; jj < bs; jj++) *bap++ = *value++; 379880c6e6aSBarry Smith } 380880c6e6aSBarry Smith } 381880c6e6aSBarry Smith noinsert2:; 382880c6e6aSBarry Smith ailen[row] = nrow; 3833ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 384880c6e6aSBarry Smith } 385880c6e6aSBarry Smith 3868ab52850SBarry Smith /* 3878ab52850SBarry Smith This routine should be optimized so that the block copy at ** Here a copy is required ** below is not needed 3888ab52850SBarry Smith by passing additional stride information into the MatSetValuesBlocked_SeqBAIJ_Inlined() routine 3898ab52850SBarry Smith */ 39066976f2fSJacob Faibussowitsch static PetscErrorCode MatSetValuesBlocked_MPIBAIJ(Mat mat, PetscInt m, const PetscInt im[], PetscInt n, const PetscInt in[], const PetscScalar v[], InsertMode addv) 391d71ae5a4SJacob Faibussowitsch { 392ab26458aSBarry Smith Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 393dd6ea824SBarry Smith const PetscScalar *value; 394f15d580aSBarry Smith MatScalar *barray = baij->barray; 395ace3abfcSBarry Smith PetscBool roworiented = baij->roworiented; 396899cda47SBarry Smith PetscInt i, j, ii, jj, row, col, rstart = baij->rstartbs; 397899cda47SBarry Smith PetscInt rend = baij->rendbs, cstart = baij->cstartbs, stepval; 398d0f46423SBarry Smith PetscInt cend = baij->cendbs, bs = mat->rmap->bs, bs2 = baij->bs2; 399ab26458aSBarry Smith 400b16ae2b1SBarry Smith PetscFunctionBegin; 40130793edcSSatish Balay if (!barray) { 4029566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(bs2, &barray)); 40382502324SSatish Balay baij->barray = barray; 40430793edcSSatish Balay } 40530793edcSSatish Balay 40626fbe8dcSKarl Rupp if (roworiented) stepval = (n - 1) * bs; 40726fbe8dcSKarl Rupp else stepval = (m - 1) * bs; 40826fbe8dcSKarl Rupp 409ab26458aSBarry Smith for (i = 0; i < m; i++) { 4105ef9f2a5SBarry Smith if (im[i] < 0) continue; 4116bdcaf15SBarry Smith PetscCheck(im[i] < baij->Mbs, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Block indexed row too large %" PetscInt_FMT " max %" PetscInt_FMT, im[i], baij->Mbs - 1); 412ab26458aSBarry Smith if (im[i] >= rstart && im[i] < rend) { 413ab26458aSBarry Smith row = im[i] - rstart; 414ab26458aSBarry Smith for (j = 0; j < n; j++) { 41515b57d14SSatish Balay /* If NumCol = 1 then a copy is not required */ 41615b57d14SSatish Balay if ((roworiented) && (n == 1)) { 417f15d580aSBarry Smith barray = (MatScalar *)v + i * bs2; 41815b57d14SSatish Balay } else if ((!roworiented) && (m == 1)) { 419f15d580aSBarry Smith barray = (MatScalar *)v + j * bs2; 42015b57d14SSatish Balay } else { /* Here a copy is required */ 421ab26458aSBarry Smith if (roworiented) { 42253ef36baSBarry Smith value = v + (i * (stepval + bs) + j) * bs; 423ab26458aSBarry Smith } else { 42453ef36baSBarry Smith value = v + (j * (stepval + bs) + i) * bs; 425abef11f7SSatish Balay } 42653ef36baSBarry Smith for (ii = 0; ii < bs; ii++, value += bs + stepval) { 42726fbe8dcSKarl Rupp for (jj = 0; jj < bs; jj++) barray[jj] = value[jj]; 42853ef36baSBarry Smith barray += bs; 42947513183SBarry Smith } 43030793edcSSatish Balay barray -= bs2; 43115b57d14SSatish Balay } 432abef11f7SSatish Balay 433abef11f7SSatish Balay if (in[j] >= cstart && in[j] < cend) { 434abef11f7SSatish Balay col = in[j] - cstart; 4359566063dSJacob Faibussowitsch PetscCall(MatSetValuesBlocked_SeqBAIJ_Inlined(baij->A, row, col, barray, addv, im[i], in[j])); 436f7d195e4SLawrence Mitchell } else if (in[j] < 0) { 437f7d195e4SLawrence Mitchell continue; 438f7d195e4SLawrence Mitchell } else { 439f7d195e4SLawrence Mitchell PetscCheck(in[j] < baij->Nbs, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Block indexed column too large %" PetscInt_FMT " max %" PetscInt_FMT, in[j], baij->Nbs - 1); 440ab26458aSBarry Smith if (mat->was_assembled) { 44148a46eb9SPierre Jolivet if (!baij->colmap) PetscCall(MatCreateColmap_MPIBAIJ_Private(mat)); 442a5eb4965SSatish Balay 443aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 444eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIGetWithDefault(baij->colmap, in[j] + 1, 0, &col)); 445*b758ae8cSBarry Smith col = col < 1 ? -1 : (col - 1) / bs; 44648e59246SSatish Balay #else 447*b758ae8cSBarry Smith col = baij->colmap[in[j]] < 1 ? -1 : (baij->colmap[in[j]] - 1) / bs; 44848e59246SSatish Balay #endif 449f4f49eeaSPierre Jolivet if (col < 0 && !((Mat_SeqBAIJ *)baij->B->data)->nonew) { 4509566063dSJacob Faibussowitsch PetscCall(MatDisAssemble_MPIBAIJ(mat)); 451ab26458aSBarry Smith col = in[j]; 4525f80ce2aSJacob Faibussowitsch } else PetscCheck(col >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new blocked indexed nonzero block (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", im[i], in[j]); 453db4deed7SKarl Rupp } else col = in[j]; 4549566063dSJacob Faibussowitsch PetscCall(MatSetValuesBlocked_SeqBAIJ_Inlined(baij->B, row, col, barray, addv, im[i], in[j])); 455ab26458aSBarry Smith } 456ab26458aSBarry Smith } 457d64ed03dSBarry Smith } else { 4585f80ce2aSJacob Faibussowitsch PetscCheck(!mat->nooffprocentries, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Setting off process block indexed row %" PetscInt_FMT " even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set", im[i]); 459ab26458aSBarry Smith if (!baij->donotstash) { 460ff2fd236SBarry Smith if (roworiented) { 4619566063dSJacob Faibussowitsch PetscCall(MatStashValuesRowBlocked_Private(&mat->bstash, im[i], n, in, v, m, n, i)); 462ff2fd236SBarry Smith } else { 4639566063dSJacob Faibussowitsch PetscCall(MatStashValuesColBlocked_Private(&mat->bstash, im[i], n, in, v, m, n, i)); 464ff2fd236SBarry Smith } 465abef11f7SSatish Balay } 466ab26458aSBarry Smith } 467ab26458aSBarry Smith } 4683ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 469ab26458aSBarry Smith } 4706fa18ffdSBarry Smith 4710bdbc534SSatish Balay #define HASH_KEY 0.6180339887 472b24ad042SBarry Smith #define HASH(size, key, tmp) (tmp = (key) * HASH_KEY, (PetscInt)((size) * (tmp - (PetscInt)tmp))) 473b24ad042SBarry Smith /* #define HASH(size,key) ((PetscInt)((size)*fmod(((key)*HASH_KEY),1))) */ 474b24ad042SBarry Smith /* #define HASH(size,key,tmp) ((PetscInt)((size)*fmod(((key)*HASH_KEY),1))) */ 47566976f2fSJacob Faibussowitsch static PetscErrorCode MatSetValues_MPIBAIJ_HT(Mat mat, PetscInt m, const PetscInt im[], PetscInt n, const PetscInt in[], const PetscScalar v[], InsertMode addv) 476d71ae5a4SJacob Faibussowitsch { 4770bdbc534SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 478ace3abfcSBarry Smith PetscBool roworiented = baij->roworiented; 479b24ad042SBarry Smith PetscInt i, j, row, col; 480d0f46423SBarry Smith PetscInt rstart_orig = mat->rmap->rstart; 481d0f46423SBarry Smith PetscInt rend_orig = mat->rmap->rend, Nbs = baij->Nbs; 482d0f46423SBarry Smith PetscInt h1, key, size = baij->ht_size, bs = mat->rmap->bs, *HT = baij->ht, idx; 483329f5518SBarry Smith PetscReal tmp; 4843eda8832SBarry Smith MatScalar **HD = baij->hd, value; 485b24ad042SBarry Smith PetscInt total_ct = baij->ht_total_ct, insert_ct = baij->ht_insert_ct; 4860bdbc534SSatish Balay 4870bdbc534SSatish Balay PetscFunctionBegin; 4880bdbc534SSatish Balay for (i = 0; i < m; i++) { 48976bd3646SJed Brown if (PetscDefined(USE_DEBUG)) { 4905f80ce2aSJacob Faibussowitsch PetscCheck(im[i] >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Negative row"); 4915f80ce2aSJacob Faibussowitsch PetscCheck(im[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, im[i], mat->rmap->N - 1); 49276bd3646SJed Brown } 4930bdbc534SSatish Balay row = im[i]; 494c2760754SSatish Balay if (row >= rstart_orig && row < rend_orig) { 4950bdbc534SSatish Balay for (j = 0; j < n; j++) { 4960bdbc534SSatish Balay col = in[j]; 497db4deed7SKarl Rupp if (roworiented) value = v[i * n + j]; 498db4deed7SKarl Rupp else value = v[i + j * m]; 499b24ad042SBarry Smith /* Look up PetscInto the Hash Table */ 500c2760754SSatish Balay key = (row / bs) * Nbs + (col / bs) + 1; 501c2760754SSatish Balay h1 = HASH(size, key, tmp); 5020bdbc534SSatish Balay 503c2760754SSatish Balay idx = h1; 50476bd3646SJed Brown if (PetscDefined(USE_DEBUG)) { 505187ce0cbSSatish Balay insert_ct++; 506187ce0cbSSatish Balay total_ct++; 507187ce0cbSSatish Balay if (HT[idx] != key) { 508fbccb6d4SPierre Jolivet for (idx = h1; (idx < size) && (HT[idx] != key); idx++, total_ct++); 509187ce0cbSSatish Balay if (idx == size) { 510fbccb6d4SPierre Jolivet for (idx = 0; (idx < h1) && (HT[idx] != key); idx++, total_ct++); 5115f80ce2aSJacob Faibussowitsch PetscCheck(idx != h1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "(%" PetscInt_FMT ",%" PetscInt_FMT ") has no entry in the hash table", row, col); 512187ce0cbSSatish Balay } 513187ce0cbSSatish Balay } 51476bd3646SJed Brown } else if (HT[idx] != key) { 515fbccb6d4SPierre Jolivet for (idx = h1; (idx < size) && (HT[idx] != key); idx++); 516c2760754SSatish Balay if (idx == size) { 517fbccb6d4SPierre Jolivet for (idx = 0; (idx < h1) && (HT[idx] != key); idx++); 5185f80ce2aSJacob Faibussowitsch PetscCheck(idx != h1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "(%" PetscInt_FMT ",%" PetscInt_FMT ") has no entry in the hash table", row, col); 519c2760754SSatish Balay } 520c2760754SSatish Balay } 521c2760754SSatish Balay /* A HASH table entry is found, so insert the values at the correct address */ 522c2760754SSatish Balay if (addv == ADD_VALUES) *(HD[idx] + (col % bs) * bs + (row % bs)) += value; 523c2760754SSatish Balay else *(HD[idx] + (col % bs) * bs + (row % bs)) = value; 5240bdbc534SSatish Balay } 52526fbe8dcSKarl Rupp } else if (!baij->donotstash) { 526ff2fd236SBarry Smith if (roworiented) { 5279566063dSJacob Faibussowitsch PetscCall(MatStashValuesRow_Private(&mat->stash, im[i], n, in, v + i * n, PETSC_FALSE)); 528ff2fd236SBarry Smith } else { 5299566063dSJacob Faibussowitsch PetscCall(MatStashValuesCol_Private(&mat->stash, im[i], n, in, v + i, m, PETSC_FALSE)); 5300bdbc534SSatish Balay } 5310bdbc534SSatish Balay } 5320bdbc534SSatish Balay } 53376bd3646SJed Brown if (PetscDefined(USE_DEBUG)) { 534abf3b562SBarry Smith baij->ht_total_ct += total_ct; 535abf3b562SBarry Smith baij->ht_insert_ct += insert_ct; 53676bd3646SJed Brown } 5373ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5380bdbc534SSatish Balay } 5390bdbc534SSatish Balay 54066976f2fSJacob Faibussowitsch static PetscErrorCode MatSetValuesBlocked_MPIBAIJ_HT(Mat mat, PetscInt m, const PetscInt im[], PetscInt n, const PetscInt in[], const PetscScalar v[], InsertMode addv) 541d71ae5a4SJacob Faibussowitsch { 5420bdbc534SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 543ace3abfcSBarry Smith PetscBool roworiented = baij->roworiented; 544b24ad042SBarry Smith PetscInt i, j, ii, jj, row, col; 545899cda47SBarry Smith PetscInt rstart = baij->rstartbs; 546d0f46423SBarry Smith PetscInt rend = mat->rmap->rend, stepval, bs = mat->rmap->bs, bs2 = baij->bs2, nbs2 = n * bs2; 547b24ad042SBarry Smith PetscInt h1, key, size = baij->ht_size, idx, *HT = baij->ht, Nbs = baij->Nbs; 548329f5518SBarry Smith PetscReal tmp; 5493eda8832SBarry Smith MatScalar **HD = baij->hd, *baij_a; 550dd6ea824SBarry Smith const PetscScalar *v_t, *value; 551b24ad042SBarry Smith PetscInt total_ct = baij->ht_total_ct, insert_ct = baij->ht_insert_ct; 5520bdbc534SSatish Balay 553d0a41580SSatish Balay PetscFunctionBegin; 55426fbe8dcSKarl Rupp if (roworiented) stepval = (n - 1) * bs; 55526fbe8dcSKarl Rupp else stepval = (m - 1) * bs; 55626fbe8dcSKarl Rupp 5570bdbc534SSatish Balay for (i = 0; i < m; i++) { 55876bd3646SJed Brown if (PetscDefined(USE_DEBUG)) { 5595f80ce2aSJacob Faibussowitsch PetscCheck(im[i] >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Negative row: %" PetscInt_FMT, im[i]); 5605f80ce2aSJacob Faibussowitsch PetscCheck(im[i] < baij->Mbs, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, im[i], baij->Mbs - 1); 56176bd3646SJed Brown } 5620bdbc534SSatish Balay row = im[i]; 563ab715e2cSSatish Balay v_t = v + i * nbs2; 564c2760754SSatish Balay if (row >= rstart && row < rend) { 5650bdbc534SSatish Balay for (j = 0; j < n; j++) { 5660bdbc534SSatish Balay col = in[j]; 5670bdbc534SSatish Balay 5680bdbc534SSatish Balay /* Look up into the Hash Table */ 569c2760754SSatish Balay key = row * Nbs + col + 1; 570c2760754SSatish Balay h1 = HASH(size, key, tmp); 5710bdbc534SSatish Balay 572c2760754SSatish Balay idx = h1; 57376bd3646SJed Brown if (PetscDefined(USE_DEBUG)) { 574187ce0cbSSatish Balay total_ct++; 575187ce0cbSSatish Balay insert_ct++; 576187ce0cbSSatish Balay if (HT[idx] != key) { 577fbccb6d4SPierre Jolivet for (idx = h1; (idx < size) && (HT[idx] != key); idx++, total_ct++); 578187ce0cbSSatish Balay if (idx == size) { 579fbccb6d4SPierre Jolivet for (idx = 0; (idx < h1) && (HT[idx] != key); idx++, total_ct++); 5805f80ce2aSJacob Faibussowitsch PetscCheck(idx != h1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "(%" PetscInt_FMT ",%" PetscInt_FMT ") has no entry in the hash table", row, col); 581187ce0cbSSatish Balay } 582187ce0cbSSatish Balay } 58376bd3646SJed Brown } else if (HT[idx] != key) { 584fbccb6d4SPierre Jolivet for (idx = h1; (idx < size) && (HT[idx] != key); idx++); 585c2760754SSatish Balay if (idx == size) { 586fbccb6d4SPierre Jolivet for (idx = 0; (idx < h1) && (HT[idx] != key); idx++); 5875f80ce2aSJacob Faibussowitsch PetscCheck(idx != h1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "(%" PetscInt_FMT ",%" PetscInt_FMT ") has no entry in the hash table", row, col); 588c2760754SSatish Balay } 589c2760754SSatish Balay } 590c2760754SSatish Balay baij_a = HD[idx]; 5910bdbc534SSatish Balay if (roworiented) { 592c2760754SSatish Balay /*value = v + i*(stepval+bs)*bs + j*bs;*/ 593187ce0cbSSatish Balay /* value = v + (i*(stepval+bs)+j)*bs; */ 594187ce0cbSSatish Balay value = v_t; 595187ce0cbSSatish Balay v_t += bs; 596fef45726SSatish Balay if (addv == ADD_VALUES) { 597c2760754SSatish Balay for (ii = 0; ii < bs; ii++, value += stepval) { 598ad540459SPierre Jolivet for (jj = ii; jj < bs2; jj += bs) baij_a[jj] += *value++; 599b4cc0f5aSSatish Balay } 600fef45726SSatish Balay } else { 601c2760754SSatish Balay for (ii = 0; ii < bs; ii++, value += stepval) { 602ad540459SPierre Jolivet for (jj = ii; jj < bs2; jj += bs) baij_a[jj] = *value++; 603fef45726SSatish Balay } 604fef45726SSatish Balay } 6050bdbc534SSatish Balay } else { 6060bdbc534SSatish Balay value = v + j * (stepval + bs) * bs + i * bs; 607fef45726SSatish Balay if (addv == ADD_VALUES) { 608b4cc0f5aSSatish Balay for (ii = 0; ii < bs; ii++, value += stepval, baij_a += bs) { 609ad540459SPierre Jolivet for (jj = 0; jj < bs; jj++) baij_a[jj] += *value++; 610fef45726SSatish Balay } 611fef45726SSatish Balay } else { 612fef45726SSatish Balay for (ii = 0; ii < bs; ii++, value += stepval, baij_a += bs) { 613ad540459SPierre Jolivet for (jj = 0; jj < bs; jj++) baij_a[jj] = *value++; 614b4cc0f5aSSatish Balay } 6150bdbc534SSatish Balay } 6160bdbc534SSatish Balay } 6170bdbc534SSatish Balay } 6180bdbc534SSatish Balay } else { 6190bdbc534SSatish Balay if (!baij->donotstash) { 6200bdbc534SSatish Balay if (roworiented) { 6219566063dSJacob Faibussowitsch PetscCall(MatStashValuesRowBlocked_Private(&mat->bstash, im[i], n, in, v, m, n, i)); 6220bdbc534SSatish Balay } else { 6239566063dSJacob Faibussowitsch PetscCall(MatStashValuesColBlocked_Private(&mat->bstash, im[i], n, in, v, m, n, i)); 6240bdbc534SSatish Balay } 6250bdbc534SSatish Balay } 6260bdbc534SSatish Balay } 6270bdbc534SSatish Balay } 62876bd3646SJed Brown if (PetscDefined(USE_DEBUG)) { 629abf3b562SBarry Smith baij->ht_total_ct += total_ct; 630abf3b562SBarry Smith baij->ht_insert_ct += insert_ct; 63176bd3646SJed Brown } 6323ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6330bdbc534SSatish Balay } 634133cdb44SSatish Balay 63566976f2fSJacob Faibussowitsch static PetscErrorCode MatGetValues_MPIBAIJ(Mat mat, PetscInt m, const PetscInt idxm[], PetscInt n, const PetscInt idxn[], PetscScalar v[]) 636d71ae5a4SJacob Faibussowitsch { 637d6de1c52SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 638d0f46423SBarry Smith PetscInt bs = mat->rmap->bs, i, j, bsrstart = mat->rmap->rstart, bsrend = mat->rmap->rend; 639d0f46423SBarry Smith PetscInt bscstart = mat->cmap->rstart, bscend = mat->cmap->rend, row, col, data; 640d6de1c52SSatish Balay 641133cdb44SSatish Balay PetscFunctionBegin; 642d6de1c52SSatish Balay for (i = 0; i < m; i++) { 64354c59aa7SJacob Faibussowitsch if (idxm[i] < 0) continue; /* negative row */ 64454c59aa7SJacob Faibussowitsch PetscCheck(idxm[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, idxm[i], mat->rmap->N - 1); 645d6de1c52SSatish Balay if (idxm[i] >= bsrstart && idxm[i] < bsrend) { 646d6de1c52SSatish Balay row = idxm[i] - bsrstart; 647d6de1c52SSatish Balay for (j = 0; j < n; j++) { 64854c59aa7SJacob Faibussowitsch if (idxn[j] < 0) continue; /* negative column */ 64954c59aa7SJacob Faibussowitsch PetscCheck(idxn[j] < mat->cmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, idxn[j], mat->cmap->N - 1); 650d6de1c52SSatish Balay if (idxn[j] >= bscstart && idxn[j] < bscend) { 651d6de1c52SSatish Balay col = idxn[j] - bscstart; 6529566063dSJacob Faibussowitsch PetscCall(MatGetValues_SeqBAIJ(baij->A, 1, &row, 1, &col, v + i * n + j)); 653d64ed03dSBarry Smith } else { 65448a46eb9SPierre Jolivet if (!baij->colmap) PetscCall(MatCreateColmap_MPIBAIJ_Private(mat)); 655aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 656eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIGetWithDefault(baij->colmap, idxn[j] / bs + 1, 0, &data)); 657fa46199cSSatish Balay data--; 65848e59246SSatish Balay #else 65948e59246SSatish Balay data = baij->colmap[idxn[j] / bs] - 1; 66048e59246SSatish Balay #endif 66148e59246SSatish Balay if ((data < 0) || (baij->garray[data / bs] != idxn[j] / bs)) *(v + i * n + j) = 0.0; 662d9d09a02SSatish Balay else { 66348e59246SSatish Balay col = data + idxn[j] % bs; 6649566063dSJacob Faibussowitsch PetscCall(MatGetValues_SeqBAIJ(baij->B, 1, &row, 1, &col, v + i * n + j)); 665d6de1c52SSatish Balay } 666d6de1c52SSatish Balay } 667d6de1c52SSatish Balay } 668f23aa3ddSBarry Smith } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "Only local values currently supported"); 669d6de1c52SSatish Balay } 6703ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 671d6de1c52SSatish Balay } 672d6de1c52SSatish Balay 67366976f2fSJacob Faibussowitsch static PetscErrorCode MatNorm_MPIBAIJ(Mat mat, NormType type, PetscReal *nrm) 674d71ae5a4SJacob Faibussowitsch { 675d6de1c52SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 676d6de1c52SSatish Balay Mat_SeqBAIJ *amat = (Mat_SeqBAIJ *)baij->A->data, *bmat = (Mat_SeqBAIJ *)baij->B->data; 677d0f46423SBarry Smith PetscInt i, j, bs2 = baij->bs2, bs = baij->A->rmap->bs, nz, row, col; 678329f5518SBarry Smith PetscReal sum = 0.0; 6793eda8832SBarry Smith MatScalar *v; 680d6de1c52SSatish Balay 681d64ed03dSBarry Smith PetscFunctionBegin; 682d6de1c52SSatish Balay if (baij->size == 1) { 6839566063dSJacob Faibussowitsch PetscCall(MatNorm(baij->A, type, nrm)); 684d6de1c52SSatish Balay } else { 685d6de1c52SSatish Balay if (type == NORM_FROBENIUS) { 686d6de1c52SSatish Balay v = amat->a; 6878a62d963SHong Zhang nz = amat->nz * bs2; 6888a62d963SHong Zhang for (i = 0; i < nz; i++) { 6899371c9d4SSatish Balay sum += PetscRealPart(PetscConj(*v) * (*v)); 6909371c9d4SSatish Balay v++; 691d6de1c52SSatish Balay } 692d6de1c52SSatish Balay v = bmat->a; 6938a62d963SHong Zhang nz = bmat->nz * bs2; 6948a62d963SHong Zhang for (i = 0; i < nz; i++) { 6959371c9d4SSatish Balay sum += PetscRealPart(PetscConj(*v) * (*v)); 6969371c9d4SSatish Balay v++; 697d6de1c52SSatish Balay } 6981c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&sum, nrm, 1, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)mat))); 6998f1a2a5eSBarry Smith *nrm = PetscSqrtReal(*nrm); 7008a62d963SHong Zhang } else if (type == NORM_1) { /* max column sum */ 7018a62d963SHong Zhang PetscReal *tmp, *tmp2; 702899cda47SBarry Smith PetscInt *jj, *garray = baij->garray, cstart = baij->rstartbs; 7039566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(mat->cmap->N, &tmp)); 7049566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(mat->cmap->N, &tmp2)); 7059371c9d4SSatish Balay v = amat->a; 7069371c9d4SSatish Balay jj = amat->j; 7078a62d963SHong Zhang for (i = 0; i < amat->nz; i++) { 7088a62d963SHong Zhang for (j = 0; j < bs; j++) { 7098a62d963SHong Zhang col = bs * (cstart + *jj) + j; /* column index */ 7108a62d963SHong Zhang for (row = 0; row < bs; row++) { 7119371c9d4SSatish Balay tmp[col] += PetscAbsScalar(*v); 7129371c9d4SSatish Balay v++; 7138a62d963SHong Zhang } 7148a62d963SHong Zhang } 7158a62d963SHong Zhang jj++; 7168a62d963SHong Zhang } 7179371c9d4SSatish Balay v = bmat->a; 7189371c9d4SSatish Balay jj = bmat->j; 7198a62d963SHong Zhang for (i = 0; i < bmat->nz; i++) { 7208a62d963SHong Zhang for (j = 0; j < bs; j++) { 7218a62d963SHong Zhang col = bs * garray[*jj] + j; 7228a62d963SHong Zhang for (row = 0; row < bs; row++) { 7239371c9d4SSatish Balay tmp[col] += PetscAbsScalar(*v); 7249371c9d4SSatish Balay v++; 7258a62d963SHong Zhang } 7268a62d963SHong Zhang } 7278a62d963SHong Zhang jj++; 7288a62d963SHong Zhang } 7291c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(tmp, tmp2, mat->cmap->N, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)mat))); 7308a62d963SHong Zhang *nrm = 0.0; 731d0f46423SBarry Smith for (j = 0; j < mat->cmap->N; j++) { 7328a62d963SHong Zhang if (tmp2[j] > *nrm) *nrm = tmp2[j]; 7338a62d963SHong Zhang } 7349566063dSJacob Faibussowitsch PetscCall(PetscFree(tmp)); 7359566063dSJacob Faibussowitsch PetscCall(PetscFree(tmp2)); 7368a62d963SHong Zhang } else if (type == NORM_INFINITY) { /* max row sum */ 737577dd1f9SKris Buschelman PetscReal *sums; 7389566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(bs, &sums)); 7398a62d963SHong Zhang sum = 0.0; 7408a62d963SHong Zhang for (j = 0; j < amat->mbs; j++) { 7418a62d963SHong Zhang for (row = 0; row < bs; row++) sums[row] = 0.0; 7428a62d963SHong Zhang v = amat->a + bs2 * amat->i[j]; 7438a62d963SHong Zhang nz = amat->i[j + 1] - amat->i[j]; 7448a62d963SHong Zhang for (i = 0; i < nz; i++) { 7458a62d963SHong Zhang for (col = 0; col < bs; col++) { 7468a62d963SHong Zhang for (row = 0; row < bs; row++) { 7479371c9d4SSatish Balay sums[row] += PetscAbsScalar(*v); 7489371c9d4SSatish Balay v++; 7498a62d963SHong Zhang } 7508a62d963SHong Zhang } 7518a62d963SHong Zhang } 7528a62d963SHong Zhang v = bmat->a + bs2 * bmat->i[j]; 7538a62d963SHong Zhang nz = bmat->i[j + 1] - bmat->i[j]; 7548a62d963SHong Zhang for (i = 0; i < nz; i++) { 7558a62d963SHong Zhang for (col = 0; col < bs; col++) { 7568a62d963SHong Zhang for (row = 0; row < bs; row++) { 7579371c9d4SSatish Balay sums[row] += PetscAbsScalar(*v); 7589371c9d4SSatish Balay v++; 7598a62d963SHong Zhang } 7608a62d963SHong Zhang } 7618a62d963SHong Zhang } 7628a62d963SHong Zhang for (row = 0; row < bs; row++) { 7638a62d963SHong Zhang if (sums[row] > sum) sum = sums[row]; 7648a62d963SHong Zhang } 7658a62d963SHong Zhang } 7661c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&sum, nrm, 1, MPIU_REAL, MPIU_MAX, PetscObjectComm((PetscObject)mat))); 7679566063dSJacob Faibussowitsch PetscCall(PetscFree(sums)); 768ce94432eSBarry Smith } else SETERRQ(PetscObjectComm((PetscObject)mat), PETSC_ERR_SUP, "No support for this norm yet"); 769d64ed03dSBarry Smith } 7703ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 771d6de1c52SSatish Balay } 77257b952d6SSatish Balay 773fef45726SSatish Balay /* 774fef45726SSatish Balay Creates the hash table, and sets the table 775fef45726SSatish Balay This table is created only once. 776fef45726SSatish Balay If new entried need to be added to the matrix 777fef45726SSatish Balay then the hash table has to be destroyed and 778fef45726SSatish Balay recreated. 779fef45726SSatish Balay */ 78066976f2fSJacob Faibussowitsch static PetscErrorCode MatCreateHashTable_MPIBAIJ_Private(Mat mat, PetscReal factor) 781d71ae5a4SJacob Faibussowitsch { 782596b8d2eSBarry Smith Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 783596b8d2eSBarry Smith Mat A = baij->A, B = baij->B; 784596b8d2eSBarry Smith Mat_SeqBAIJ *a = (Mat_SeqBAIJ *)A->data, *b = (Mat_SeqBAIJ *)B->data; 785b24ad042SBarry Smith PetscInt i, j, k, nz = a->nz + b->nz, h1, *ai = a->i, *aj = a->j, *bi = b->i, *bj = b->j; 786fca92195SBarry Smith PetscInt ht_size, bs2 = baij->bs2, rstart = baij->rstartbs; 787899cda47SBarry Smith PetscInt cstart = baij->cstartbs, *garray = baij->garray, row, col, Nbs = baij->Nbs; 788b24ad042SBarry Smith PetscInt *HT, key; 7893eda8832SBarry Smith MatScalar **HD; 790329f5518SBarry Smith PetscReal tmp; 7916cf91177SBarry Smith #if defined(PETSC_USE_INFO) 792b24ad042SBarry Smith PetscInt ct = 0, max = 0; 7934a15367fSSatish Balay #endif 794fef45726SSatish Balay 795d64ed03dSBarry Smith PetscFunctionBegin; 7963ba16761SJacob Faibussowitsch if (baij->ht) PetscFunctionReturn(PETSC_SUCCESS); 797fef45726SSatish Balay 798fca92195SBarry Smith baij->ht_size = (PetscInt)(factor * nz); 799fca92195SBarry Smith ht_size = baij->ht_size; 8000bdbc534SSatish Balay 801fef45726SSatish Balay /* Allocate Memory for Hash Table */ 8029566063dSJacob Faibussowitsch PetscCall(PetscCalloc2(ht_size, &baij->hd, ht_size, &baij->ht)); 803b9e4cc15SSatish Balay HD = baij->hd; 804a07cd24cSSatish Balay HT = baij->ht; 805b9e4cc15SSatish Balay 806596b8d2eSBarry Smith /* Loop Over A */ 8070bdbc534SSatish Balay for (i = 0; i < a->mbs; i++) { 808596b8d2eSBarry Smith for (j = ai[i]; j < ai[i + 1]; j++) { 8090bdbc534SSatish Balay row = i + rstart; 8100bdbc534SSatish Balay col = aj[j] + cstart; 811596b8d2eSBarry Smith 812187ce0cbSSatish Balay key = row * Nbs + col + 1; 813fca92195SBarry Smith h1 = HASH(ht_size, key, tmp); 814fca92195SBarry Smith for (k = 0; k < ht_size; k++) { 815fca92195SBarry Smith if (!HT[(h1 + k) % ht_size]) { 816fca92195SBarry Smith HT[(h1 + k) % ht_size] = key; 817fca92195SBarry Smith HD[(h1 + k) % ht_size] = a->a + j * bs2; 818596b8d2eSBarry Smith break; 8196cf91177SBarry Smith #if defined(PETSC_USE_INFO) 820187ce0cbSSatish Balay } else { 821187ce0cbSSatish Balay ct++; 822187ce0cbSSatish Balay #endif 823596b8d2eSBarry Smith } 824187ce0cbSSatish Balay } 8256cf91177SBarry Smith #if defined(PETSC_USE_INFO) 826187ce0cbSSatish Balay if (k > max) max = k; 827187ce0cbSSatish Balay #endif 828596b8d2eSBarry Smith } 829596b8d2eSBarry Smith } 830596b8d2eSBarry Smith /* Loop Over B */ 8310bdbc534SSatish Balay for (i = 0; i < b->mbs; i++) { 832596b8d2eSBarry Smith for (j = bi[i]; j < bi[i + 1]; j++) { 8330bdbc534SSatish Balay row = i + rstart; 8340bdbc534SSatish Balay col = garray[bj[j]]; 835187ce0cbSSatish Balay key = row * Nbs + col + 1; 836fca92195SBarry Smith h1 = HASH(ht_size, key, tmp); 837fca92195SBarry Smith for (k = 0; k < ht_size; k++) { 838fca92195SBarry Smith if (!HT[(h1 + k) % ht_size]) { 839fca92195SBarry Smith HT[(h1 + k) % ht_size] = key; 840fca92195SBarry Smith HD[(h1 + k) % ht_size] = b->a + j * bs2; 841596b8d2eSBarry Smith break; 8426cf91177SBarry Smith #if defined(PETSC_USE_INFO) 843187ce0cbSSatish Balay } else { 844187ce0cbSSatish Balay ct++; 845187ce0cbSSatish Balay #endif 846596b8d2eSBarry Smith } 847187ce0cbSSatish Balay } 8486cf91177SBarry Smith #if defined(PETSC_USE_INFO) 849187ce0cbSSatish Balay if (k > max) max = k; 850187ce0cbSSatish Balay #endif 851596b8d2eSBarry Smith } 852596b8d2eSBarry Smith } 853596b8d2eSBarry Smith 854596b8d2eSBarry Smith /* Print Summary */ 8556cf91177SBarry Smith #if defined(PETSC_USE_INFO) 856fca92195SBarry Smith for (i = 0, j = 0; i < ht_size; i++) { 85726fbe8dcSKarl Rupp if (HT[i]) j++; 858c38d4ed2SBarry Smith } 8599566063dSJacob Faibussowitsch PetscCall(PetscInfo(mat, "Average Search = %5.2g,max search = %" PetscInt_FMT "\n", (!j) ? (double)0.0 : (double)(((PetscReal)(ct + j)) / (double)j), max)); 860187ce0cbSSatish Balay #endif 8613ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 862596b8d2eSBarry Smith } 86357b952d6SSatish Balay 86466976f2fSJacob Faibussowitsch static PetscErrorCode MatAssemblyBegin_MPIBAIJ(Mat mat, MatAssemblyType mode) 865d71ae5a4SJacob Faibussowitsch { 866bbb85fb3SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 867b24ad042SBarry Smith PetscInt nstash, reallocs; 868bbb85fb3SSatish Balay 869bbb85fb3SSatish Balay PetscFunctionBegin; 8703ba16761SJacob Faibussowitsch if (baij->donotstash || mat->nooffprocentries) PetscFunctionReturn(PETSC_SUCCESS); 871bbb85fb3SSatish Balay 8729566063dSJacob Faibussowitsch PetscCall(MatStashScatterBegin_Private(mat, &mat->stash, mat->rmap->range)); 8739566063dSJacob Faibussowitsch PetscCall(MatStashScatterBegin_Private(mat, &mat->bstash, baij->rangebs)); 8749566063dSJacob Faibussowitsch PetscCall(MatStashGetInfo_Private(&mat->stash, &nstash, &reallocs)); 8759566063dSJacob Faibussowitsch PetscCall(PetscInfo(mat, "Stash has %" PetscInt_FMT " entries,uses %" PetscInt_FMT " mallocs.\n", nstash, reallocs)); 8769566063dSJacob Faibussowitsch PetscCall(MatStashGetInfo_Private(&mat->bstash, &nstash, &reallocs)); 8779566063dSJacob Faibussowitsch PetscCall(PetscInfo(mat, "Block-Stash has %" PetscInt_FMT " entries, uses %" PetscInt_FMT " mallocs.\n", nstash, reallocs)); 8783ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 879bbb85fb3SSatish Balay } 880bbb85fb3SSatish Balay 88166976f2fSJacob Faibussowitsch static PetscErrorCode MatAssemblyEnd_MPIBAIJ(Mat mat, MatAssemblyType mode) 882d71ae5a4SJacob Faibussowitsch { 883bbb85fb3SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 88491c97fd4SSatish Balay Mat_SeqBAIJ *a = (Mat_SeqBAIJ *)baij->A->data; 885b24ad042SBarry Smith PetscInt i, j, rstart, ncols, flg, bs2 = baij->bs2; 886e44c0bd4SBarry Smith PetscInt *row, *col; 887ace3abfcSBarry Smith PetscBool r1, r2, r3, other_disassembled; 8883eda8832SBarry Smith MatScalar *val; 889b24ad042SBarry Smith PetscMPIInt n; 890bbb85fb3SSatish Balay 891bbb85fb3SSatish Balay PetscFunctionBegin; 8925fd66863SKarl Rupp /* do not use 'b=(Mat_SeqBAIJ*)baij->B->data' as B can be reset in disassembly */ 8934cb17eb5SBarry Smith if (!baij->donotstash && !mat->nooffprocentries) { 894a2d1c673SSatish Balay while (1) { 8959566063dSJacob Faibussowitsch PetscCall(MatStashScatterGetMesg_Private(&mat->stash, &n, &row, &col, &val, &flg)); 896a2d1c673SSatish Balay if (!flg) break; 897a2d1c673SSatish Balay 898bbb85fb3SSatish Balay for (i = 0; i < n;) { 899bbb85fb3SSatish Balay /* Now identify the consecutive vals belonging to the same row */ 90026fbe8dcSKarl Rupp for (j = i, rstart = row[j]; j < n; j++) { 90126fbe8dcSKarl Rupp if (row[j] != rstart) break; 90226fbe8dcSKarl Rupp } 903bbb85fb3SSatish Balay if (j < n) ncols = j - i; 904bbb85fb3SSatish Balay else ncols = n - i; 905bbb85fb3SSatish Balay /* Now assemble all these values with a single function call */ 9069566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPIBAIJ(mat, 1, row + i, ncols, col + i, val + i, mat->insertmode)); 907bbb85fb3SSatish Balay i = j; 908bbb85fb3SSatish Balay } 909bbb85fb3SSatish Balay } 9109566063dSJacob Faibussowitsch PetscCall(MatStashScatterEnd_Private(&mat->stash)); 911a2d1c673SSatish Balay /* Now process the block-stash. Since the values are stashed column-oriented, 9125e116b59SBarry Smith set the row-oriented flag to column-oriented, and after MatSetValues() 913a2d1c673SSatish Balay restore the original flags */ 914a2d1c673SSatish Balay r1 = baij->roworiented; 915a2d1c673SSatish Balay r2 = a->roworiented; 91691c97fd4SSatish Balay r3 = ((Mat_SeqBAIJ *)baij->B->data)->roworiented; 91726fbe8dcSKarl Rupp 9187c922b88SBarry Smith baij->roworiented = PETSC_FALSE; 9197c922b88SBarry Smith a->roworiented = PETSC_FALSE; 920f4f49eeaSPierre Jolivet ((Mat_SeqBAIJ *)baij->B->data)->roworiented = PETSC_FALSE; 921a2d1c673SSatish Balay while (1) { 9229566063dSJacob Faibussowitsch PetscCall(MatStashScatterGetMesg_Private(&mat->bstash, &n, &row, &col, &val, &flg)); 923a2d1c673SSatish Balay if (!flg) break; 924a2d1c673SSatish Balay 925a2d1c673SSatish Balay for (i = 0; i < n;) { 926a2d1c673SSatish Balay /* Now identify the consecutive vals belonging to the same row */ 92726fbe8dcSKarl Rupp for (j = i, rstart = row[j]; j < n; j++) { 92826fbe8dcSKarl Rupp if (row[j] != rstart) break; 92926fbe8dcSKarl Rupp } 930a2d1c673SSatish Balay if (j < n) ncols = j - i; 931a2d1c673SSatish Balay else ncols = n - i; 9329566063dSJacob Faibussowitsch PetscCall(MatSetValuesBlocked_MPIBAIJ(mat, 1, row + i, ncols, col + i, val + i * bs2, mat->insertmode)); 933a2d1c673SSatish Balay i = j; 934a2d1c673SSatish Balay } 935a2d1c673SSatish Balay } 9369566063dSJacob Faibussowitsch PetscCall(MatStashScatterEnd_Private(&mat->bstash)); 93726fbe8dcSKarl Rupp 938a2d1c673SSatish Balay baij->roworiented = r1; 939a2d1c673SSatish Balay a->roworiented = r2; 9405e116b59SBarry Smith ((Mat_SeqBAIJ *)baij->B->data)->roworiented = r3; 941bbb85fb3SSatish Balay } 942bbb85fb3SSatish Balay 9439566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(baij->A, mode)); 9449566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(baij->A, mode)); 945bbb85fb3SSatish Balay 946bbb85fb3SSatish Balay /* determine if any processor has disassembled, if so we must 9476aad120cSJose E. Roman also disassemble ourselves, in order that we may reassemble. */ 948bbb85fb3SSatish Balay /* 949bbb85fb3SSatish Balay if nonzero structure of submatrix B cannot change then we know that 950bbb85fb3SSatish Balay no processor disassembled thus we can skip this stuff 951bbb85fb3SSatish Balay */ 952bbb85fb3SSatish Balay if (!((Mat_SeqBAIJ *)baij->B->data)->nonew) { 9535f9db2b2SJunchao Zhang PetscCall(MPIU_Allreduce(&mat->was_assembled, &other_disassembled, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)mat))); 95448a46eb9SPierre Jolivet if (mat->was_assembled && !other_disassembled) PetscCall(MatDisAssemble_MPIBAIJ(mat)); 955bbb85fb3SSatish Balay } 956bbb85fb3SSatish Balay 95748a46eb9SPierre Jolivet if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) PetscCall(MatSetUpMultiply_MPIBAIJ(mat)); 9589566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(baij->B, mode)); 9599566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(baij->B, mode)); 960bbb85fb3SSatish Balay 9616cf91177SBarry Smith #if defined(PETSC_USE_INFO) 962bbb85fb3SSatish Balay if (baij->ht && mode == MAT_FINAL_ASSEMBLY) { 9639566063dSJacob Faibussowitsch PetscCall(PetscInfo(mat, "Average Hash Table Search in MatSetValues = %5.2f\n", (double)((PetscReal)baij->ht_total_ct) / baij->ht_insert_ct)); 96426fbe8dcSKarl Rupp 965bbb85fb3SSatish Balay baij->ht_total_ct = 0; 966bbb85fb3SSatish Balay baij->ht_insert_ct = 0; 967bbb85fb3SSatish Balay } 968bbb85fb3SSatish Balay #endif 969bbb85fb3SSatish Balay if (baij->ht_flag && !baij->ht && mode == MAT_FINAL_ASSEMBLY) { 9709566063dSJacob Faibussowitsch PetscCall(MatCreateHashTable_MPIBAIJ_Private(mat, baij->ht_fact)); 97126fbe8dcSKarl Rupp 972bbb85fb3SSatish Balay mat->ops->setvalues = MatSetValues_MPIBAIJ_HT; 973bbb85fb3SSatish Balay mat->ops->setvaluesblocked = MatSetValuesBlocked_MPIBAIJ_HT; 974bbb85fb3SSatish Balay } 975bbb85fb3SSatish Balay 9769566063dSJacob Faibussowitsch PetscCall(PetscFree2(baij->rowvalues, baij->rowindices)); 97726fbe8dcSKarl Rupp 978f4259b30SLisandro Dalcin baij->rowvalues = NULL; 9794f9cfa9eSBarry Smith 9804f9cfa9eSBarry Smith /* if no new nonzero locations are allowed in matrix then only set the matrix state the first time through */ 981f4f49eeaSPierre Jolivet if ((!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) || !((Mat_SeqBAIJ *)baij->A->data)->nonew) { 982e56f5c9eSBarry Smith PetscObjectState state = baij->A->nonzerostate + baij->B->nonzerostate; 9831c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&state, &mat->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)mat))); 984e56f5c9eSBarry Smith } 9853ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 986bbb85fb3SSatish Balay } 98757b952d6SSatish Balay 9887da1fb6eSBarry Smith extern PetscErrorCode MatView_SeqBAIJ(Mat, PetscViewer); 9899804daf3SBarry Smith #include <petscdraw.h> 990d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatView_MPIBAIJ_ASCIIorDraworSocket(Mat mat, PetscViewer viewer) 991d71ae5a4SJacob Faibussowitsch { 99257b952d6SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 9937da1fb6eSBarry Smith PetscMPIInt rank = baij->rank; 994d0f46423SBarry Smith PetscInt bs = mat->rmap->bs; 995ace3abfcSBarry Smith PetscBool iascii, isdraw; 996b0a32e0cSBarry Smith PetscViewer sviewer; 997f3ef73ceSBarry Smith PetscViewerFormat format; 99857b952d6SSatish Balay 999d64ed03dSBarry Smith PetscFunctionBegin; 10009566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &iascii)); 10019566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERDRAW, &isdraw)); 100232077d6dSBarry Smith if (iascii) { 10039566063dSJacob Faibussowitsch PetscCall(PetscViewerGetFormat(viewer, &format)); 1004456192e2SBarry Smith if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 10054e220ebcSLois Curfman McInnes MatInfo info; 10069566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)mat), &rank)); 10079566063dSJacob Faibussowitsch PetscCall(MatGetInfo(mat, MAT_LOCAL, &info)); 10089566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPushSynchronized(viewer)); 10099371c9d4SSatish Balay PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] Local rows %" PetscInt_FMT " nz %" PetscInt_FMT " nz alloced %" PetscInt_FMT " bs %" PetscInt_FMT " mem %g\n", rank, mat->rmap->n, (PetscInt)info.nz_used, (PetscInt)info.nz_allocated, 10109371c9d4SSatish Balay mat->rmap->bs, (double)info.memory)); 10119566063dSJacob Faibussowitsch PetscCall(MatGetInfo(baij->A, MAT_LOCAL, &info)); 10129566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] on-diagonal part: nz %" PetscInt_FMT " \n", rank, (PetscInt)info.nz_used)); 10139566063dSJacob Faibussowitsch PetscCall(MatGetInfo(baij->B, MAT_LOCAL, &info)); 10149566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] off-diagonal part: nz %" PetscInt_FMT " \n", rank, (PetscInt)info.nz_used)); 10159566063dSJacob Faibussowitsch PetscCall(PetscViewerFlush(viewer)); 10169566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPopSynchronized(viewer)); 10179566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "Information on VecScatter used in matrix-vector product: \n")); 10189566063dSJacob Faibussowitsch PetscCall(VecScatterView(baij->Mvctx, viewer)); 10193ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1020fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_INFO) { 10219566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, " block size is %" PetscInt_FMT "\n", bs)); 10223ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 102304929863SHong Zhang } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) { 10243ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 102557b952d6SSatish Balay } 102657b952d6SSatish Balay } 102757b952d6SSatish Balay 10280f5bd95cSBarry Smith if (isdraw) { 1029b0a32e0cSBarry Smith PetscDraw draw; 1030ace3abfcSBarry Smith PetscBool isnull; 10319566063dSJacob Faibussowitsch PetscCall(PetscViewerDrawGetDraw(viewer, 0, &draw)); 10329566063dSJacob Faibussowitsch PetscCall(PetscDrawIsNull(draw, &isnull)); 10333ba16761SJacob Faibussowitsch if (isnull) PetscFunctionReturn(PETSC_SUCCESS); 103457b952d6SSatish Balay } 103557b952d6SSatish Balay 10367da1fb6eSBarry Smith { 103757b952d6SSatish Balay /* assemble the entire matrix onto first processor. */ 103857b952d6SSatish Balay Mat A; 103957b952d6SSatish Balay Mat_SeqBAIJ *Aloc; 1040d0f46423SBarry Smith PetscInt M = mat->rmap->N, N = mat->cmap->N, *ai, *aj, col, i, j, k, *rvals, mbs = baij->mbs; 10413eda8832SBarry Smith MatScalar *a; 10423e219373SBarry Smith const char *matname; 104357b952d6SSatish Balay 1044f204ca49SKris Buschelman /* Here we are creating a temporary matrix, so will assume MPIBAIJ is acceptable */ 1045f204ca49SKris Buschelman /* Perhaps this should be the type of mat? */ 10469566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)mat), &A)); 1047dd400576SPatrick Sanan if (rank == 0) { 10489566063dSJacob Faibussowitsch PetscCall(MatSetSizes(A, M, N, M, N)); 1049d64ed03dSBarry Smith } else { 10509566063dSJacob Faibussowitsch PetscCall(MatSetSizes(A, 0, 0, M, N)); 105157b952d6SSatish Balay } 10529566063dSJacob Faibussowitsch PetscCall(MatSetType(A, MATMPIBAIJ)); 10539566063dSJacob Faibussowitsch PetscCall(MatMPIBAIJSetPreallocation(A, mat->rmap->bs, 0, NULL, 0, NULL)); 10549566063dSJacob Faibussowitsch PetscCall(MatSetOption(A, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_FALSE)); 105557b952d6SSatish Balay 105657b952d6SSatish Balay /* copy over the A part */ 105757b952d6SSatish Balay Aloc = (Mat_SeqBAIJ *)baij->A->data; 10589371c9d4SSatish Balay ai = Aloc->i; 10599371c9d4SSatish Balay aj = Aloc->j; 10609371c9d4SSatish Balay a = Aloc->a; 10619566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(bs, &rvals)); 106257b952d6SSatish Balay 106357b952d6SSatish Balay for (i = 0; i < mbs; i++) { 1064899cda47SBarry Smith rvals[0] = bs * (baij->rstartbs + i); 106526fbe8dcSKarl Rupp for (j = 1; j < bs; j++) rvals[j] = rvals[j - 1] + 1; 106657b952d6SSatish Balay for (j = ai[i]; j < ai[i + 1]; j++) { 1067899cda47SBarry Smith col = (baij->cstartbs + aj[j]) * bs; 106857b952d6SSatish Balay for (k = 0; k < bs; k++) { 10699566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPIBAIJ(A, bs, rvals, 1, &col, a, INSERT_VALUES)); 10709371c9d4SSatish Balay col++; 10719371c9d4SSatish Balay a += bs; 107257b952d6SSatish Balay } 107357b952d6SSatish Balay } 107457b952d6SSatish Balay } 107557b952d6SSatish Balay /* copy over the B part */ 107657b952d6SSatish Balay Aloc = (Mat_SeqBAIJ *)baij->B->data; 10779371c9d4SSatish Balay ai = Aloc->i; 10789371c9d4SSatish Balay aj = Aloc->j; 10799371c9d4SSatish Balay a = Aloc->a; 108057b952d6SSatish Balay for (i = 0; i < mbs; i++) { 1081899cda47SBarry Smith rvals[0] = bs * (baij->rstartbs + i); 108226fbe8dcSKarl Rupp for (j = 1; j < bs; j++) rvals[j] = rvals[j - 1] + 1; 108357b952d6SSatish Balay for (j = ai[i]; j < ai[i + 1]; j++) { 108457b952d6SSatish Balay col = baij->garray[aj[j]] * bs; 108557b952d6SSatish Balay for (k = 0; k < bs; k++) { 10869566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPIBAIJ(A, bs, rvals, 1, &col, a, INSERT_VALUES)); 10879371c9d4SSatish Balay col++; 10889371c9d4SSatish Balay a += bs; 108957b952d6SSatish Balay } 109057b952d6SSatish Balay } 109157b952d6SSatish Balay } 10929566063dSJacob Faibussowitsch PetscCall(PetscFree(rvals)); 10939566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(A, MAT_FINAL_ASSEMBLY)); 10949566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(A, MAT_FINAL_ASSEMBLY)); 109555843e3eSBarry Smith /* 109655843e3eSBarry Smith Everyone has to call to draw the matrix since the graphics waits are 1097b0a32e0cSBarry Smith synchronized across all processors that share the PetscDraw object 109855843e3eSBarry Smith */ 10999566063dSJacob Faibussowitsch PetscCall(PetscViewerGetSubViewer(viewer, PETSC_COMM_SELF, &sviewer)); 110023a3927dSBarry Smith if (((PetscObject)mat)->name) PetscCall(PetscObjectGetName((PetscObject)mat, &matname)); 1101dd400576SPatrick Sanan if (rank == 0) { 1102f4f49eeaSPierre Jolivet if (((PetscObject)mat)->name) PetscCall(PetscObjectSetName((PetscObject)((Mat_MPIBAIJ *)A->data)->A, matname)); 1103f4f49eeaSPierre Jolivet PetscCall(MatView_SeqBAIJ(((Mat_MPIBAIJ *)A->data)->A, sviewer)); 110457b952d6SSatish Balay } 11059566063dSJacob Faibussowitsch PetscCall(PetscViewerRestoreSubViewer(viewer, PETSC_COMM_SELF, &sviewer)); 11069566063dSJacob Faibussowitsch PetscCall(MatDestroy(&A)); 110757b952d6SSatish Balay } 11083ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 110957b952d6SSatish Balay } 111057b952d6SSatish Balay 1111618cc2edSLisandro Dalcin /* Used for both MPIBAIJ and MPISBAIJ matrices */ 1112d71ae5a4SJacob Faibussowitsch PetscErrorCode MatView_MPIBAIJ_Binary(Mat mat, PetscViewer viewer) 1113d71ae5a4SJacob Faibussowitsch { 1114b51a4376SLisandro Dalcin Mat_MPIBAIJ *aij = (Mat_MPIBAIJ *)mat->data; 1115b51a4376SLisandro Dalcin Mat_SeqBAIJ *A = (Mat_SeqBAIJ *)aij->A->data; 1116b51a4376SLisandro Dalcin Mat_SeqBAIJ *B = (Mat_SeqBAIJ *)aij->B->data; 1117b51a4376SLisandro Dalcin const PetscInt *garray = aij->garray; 111817a3732bSBarry Smith PetscInt header[4], M, N, m, rs, cs, bs, cnt, i, j, ja, jb, k, l; 111917a3732bSBarry Smith PetscInt64 nz, hnz; 1120b51a4376SLisandro Dalcin PetscInt *rowlens, *colidxs; 1121b51a4376SLisandro Dalcin PetscScalar *matvals; 112217a3732bSBarry Smith PetscMPIInt rank; 1123660746e0SBarry Smith 1124660746e0SBarry Smith PetscFunctionBegin; 11259566063dSJacob Faibussowitsch PetscCall(PetscViewerSetUp(viewer)); 1126b51a4376SLisandro Dalcin 1127b51a4376SLisandro Dalcin M = mat->rmap->N; 1128b51a4376SLisandro Dalcin N = mat->cmap->N; 1129b51a4376SLisandro Dalcin m = mat->rmap->n; 1130b51a4376SLisandro Dalcin rs = mat->rmap->rstart; 1131b51a4376SLisandro Dalcin cs = mat->cmap->rstart; 1132b51a4376SLisandro Dalcin bs = mat->rmap->bs; 1133b51a4376SLisandro Dalcin nz = bs * bs * (A->nz + B->nz); 1134b51a4376SLisandro Dalcin 1135b51a4376SLisandro Dalcin /* write matrix header */ 1136660746e0SBarry Smith header[0] = MAT_FILE_CLASSID; 11379371c9d4SSatish Balay header[1] = M; 11389371c9d4SSatish Balay header[2] = N; 113917a3732bSBarry Smith PetscCallMPI(MPI_Reduce(&nz, &hnz, 1, MPIU_INT64, MPI_SUM, 0, PetscObjectComm((PetscObject)mat))); 114017a3732bSBarry Smith PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)mat), &rank)); 114117a3732bSBarry Smith if (rank == 0) PetscCall(PetscIntCast(hnz, &header[3])); 11429566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryWrite(viewer, header, 4, PETSC_INT)); 1143660746e0SBarry Smith 1144b51a4376SLisandro Dalcin /* fill in and store row lengths */ 11459566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m, &rowlens)); 1146b51a4376SLisandro Dalcin for (cnt = 0, i = 0; i < A->mbs; i++) 11479371c9d4SSatish Balay for (j = 0; j < bs; j++) rowlens[cnt++] = bs * (A->i[i + 1] - A->i[i] + B->i[i + 1] - B->i[i]); 11489566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryWriteAll(viewer, rowlens, m, rs, M, PETSC_INT)); 11499566063dSJacob Faibussowitsch PetscCall(PetscFree(rowlens)); 1150660746e0SBarry Smith 1151b51a4376SLisandro Dalcin /* fill in and store column indices */ 11529566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nz, &colidxs)); 1153b51a4376SLisandro Dalcin for (cnt = 0, i = 0; i < A->mbs; i++) { 1154b51a4376SLisandro Dalcin for (k = 0; k < bs; k++) { 1155b51a4376SLisandro Dalcin for (jb = B->i[i]; jb < B->i[i + 1]; jb++) { 1156b51a4376SLisandro Dalcin if (garray[B->j[jb]] > cs / bs) break; 11579371c9d4SSatish Balay for (l = 0; l < bs; l++) colidxs[cnt++] = bs * garray[B->j[jb]] + l; 1158660746e0SBarry Smith } 1159b51a4376SLisandro Dalcin for (ja = A->i[i]; ja < A->i[i + 1]; ja++) 11609371c9d4SSatish Balay for (l = 0; l < bs; l++) colidxs[cnt++] = bs * A->j[ja] + l + cs; 1161b51a4376SLisandro Dalcin for (; jb < B->i[i + 1]; jb++) 11629371c9d4SSatish Balay for (l = 0; l < bs; l++) colidxs[cnt++] = bs * garray[B->j[jb]] + l; 1163660746e0SBarry Smith } 1164660746e0SBarry Smith } 116517a3732bSBarry Smith PetscCheck(cnt == nz, PETSC_COMM_SELF, PETSC_ERR_LIB, "Internal PETSc error: cnt = %" PetscInt_FMT " nz = %" PetscInt64_FMT, cnt, nz); 11669566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryWriteAll(viewer, colidxs, nz, PETSC_DECIDE, PETSC_DECIDE, PETSC_INT)); 11679566063dSJacob Faibussowitsch PetscCall(PetscFree(colidxs)); 1168660746e0SBarry Smith 1169b51a4376SLisandro Dalcin /* fill in and store nonzero values */ 11709566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nz, &matvals)); 1171b51a4376SLisandro Dalcin for (cnt = 0, i = 0; i < A->mbs; i++) { 1172b51a4376SLisandro Dalcin for (k = 0; k < bs; k++) { 1173b51a4376SLisandro Dalcin for (jb = B->i[i]; jb < B->i[i + 1]; jb++) { 1174b51a4376SLisandro Dalcin if (garray[B->j[jb]] > cs / bs) break; 11759371c9d4SSatish Balay for (l = 0; l < bs; l++) matvals[cnt++] = B->a[bs * (bs * jb + l) + k]; 1176660746e0SBarry Smith } 1177b51a4376SLisandro Dalcin for (ja = A->i[i]; ja < A->i[i + 1]; ja++) 11789371c9d4SSatish Balay for (l = 0; l < bs; l++) matvals[cnt++] = A->a[bs * (bs * ja + l) + k]; 1179b51a4376SLisandro Dalcin for (; jb < B->i[i + 1]; jb++) 11809371c9d4SSatish Balay for (l = 0; l < bs; l++) matvals[cnt++] = B->a[bs * (bs * jb + l) + k]; 1181660746e0SBarry Smith } 1182b51a4376SLisandro Dalcin } 11839566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryWriteAll(viewer, matvals, nz, PETSC_DECIDE, PETSC_DECIDE, PETSC_SCALAR)); 11849566063dSJacob Faibussowitsch PetscCall(PetscFree(matvals)); 1185660746e0SBarry Smith 1186b51a4376SLisandro Dalcin /* write block size option to the viewer's .info file */ 11879566063dSJacob Faibussowitsch PetscCall(MatView_Binary_BlockSizes(mat, viewer)); 11883ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1189660746e0SBarry Smith } 1190660746e0SBarry Smith 1191d71ae5a4SJacob Faibussowitsch PetscErrorCode MatView_MPIBAIJ(Mat mat, PetscViewer viewer) 1192d71ae5a4SJacob Faibussowitsch { 1193ace3abfcSBarry Smith PetscBool iascii, isdraw, issocket, isbinary; 119457b952d6SSatish Balay 1195d64ed03dSBarry Smith PetscFunctionBegin; 11969566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &iascii)); 11979566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERDRAW, &isdraw)); 11989566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERSOCKET, &issocket)); 11999566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary)); 1200660746e0SBarry Smith if (iascii || isdraw || issocket) { 12019566063dSJacob Faibussowitsch PetscCall(MatView_MPIBAIJ_ASCIIorDraworSocket(mat, viewer)); 12021baa6e33SBarry Smith } else if (isbinary) PetscCall(MatView_MPIBAIJ_Binary(mat, viewer)); 12033ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 120457b952d6SSatish Balay } 120557b952d6SSatish Balay 120666976f2fSJacob Faibussowitsch static PetscErrorCode MatMult_MPIBAIJ(Mat A, Vec xx, Vec yy) 1207d71ae5a4SJacob Faibussowitsch { 1208cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 1209b24ad042SBarry Smith PetscInt nt; 1210cee3aa6bSSatish Balay 1211d64ed03dSBarry Smith PetscFunctionBegin; 12129566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(xx, &nt)); 12135f80ce2aSJacob Faibussowitsch PetscCheck(nt == A->cmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Incompatible partition of A and xx"); 12149566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(yy, &nt)); 1215da81f932SPierre Jolivet PetscCheck(nt == A->rmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Incompatible partition of A and yy"); 12169566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(a->Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD)); 12179566063dSJacob Faibussowitsch PetscCall((*a->A->ops->mult)(a->A, xx, yy)); 12189566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(a->Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD)); 12199566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multadd)(a->B, a->lvec, yy, yy)); 12203ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1221cee3aa6bSSatish Balay } 1222cee3aa6bSSatish Balay 122366976f2fSJacob Faibussowitsch static PetscErrorCode MatMultAdd_MPIBAIJ(Mat A, Vec xx, Vec yy, Vec zz) 1224d71ae5a4SJacob Faibussowitsch { 1225cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 1226d64ed03dSBarry Smith 1227d64ed03dSBarry Smith PetscFunctionBegin; 12289566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(a->Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD)); 12299566063dSJacob Faibussowitsch PetscCall((*a->A->ops->multadd)(a->A, xx, yy, zz)); 12309566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(a->Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD)); 12319566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multadd)(a->B, a->lvec, zz, zz)); 12323ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1233cee3aa6bSSatish Balay } 1234cee3aa6bSSatish Balay 123566976f2fSJacob Faibussowitsch static PetscErrorCode MatMultTranspose_MPIBAIJ(Mat A, Vec xx, Vec yy) 1236d71ae5a4SJacob Faibussowitsch { 1237cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 1238cee3aa6bSSatish Balay 1239d64ed03dSBarry Smith PetscFunctionBegin; 1240cee3aa6bSSatish Balay /* do nondiagonal part */ 12419566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multtranspose)(a->B, xx, a->lvec)); 1242cee3aa6bSSatish Balay /* do local part */ 12439566063dSJacob Faibussowitsch PetscCall((*a->A->ops->multtranspose)(a->A, xx, yy)); 1244e4a140f6SJunchao Zhang /* add partial results together */ 12459566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(a->Mvctx, a->lvec, yy, ADD_VALUES, SCATTER_REVERSE)); 12469566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(a->Mvctx, a->lvec, yy, ADD_VALUES, SCATTER_REVERSE)); 12473ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1248cee3aa6bSSatish Balay } 1249cee3aa6bSSatish Balay 125066976f2fSJacob Faibussowitsch static PetscErrorCode MatMultTransposeAdd_MPIBAIJ(Mat A, Vec xx, Vec yy, Vec zz) 1251d71ae5a4SJacob Faibussowitsch { 1252cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 1253cee3aa6bSSatish Balay 1254d64ed03dSBarry Smith PetscFunctionBegin; 1255cee3aa6bSSatish Balay /* do nondiagonal part */ 12569566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multtranspose)(a->B, xx, a->lvec)); 1257cee3aa6bSSatish Balay /* do local part */ 12589566063dSJacob Faibussowitsch PetscCall((*a->A->ops->multtransposeadd)(a->A, xx, yy, zz)); 1259e4a140f6SJunchao Zhang /* add partial results together */ 12609566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(a->Mvctx, a->lvec, zz, ADD_VALUES, SCATTER_REVERSE)); 12619566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(a->Mvctx, a->lvec, zz, ADD_VALUES, SCATTER_REVERSE)); 12623ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1263cee3aa6bSSatish Balay } 1264cee3aa6bSSatish Balay 1265cee3aa6bSSatish Balay /* 1266cee3aa6bSSatish Balay This only works correctly for square matrices where the subblock A->A is the 1267cee3aa6bSSatish Balay diagonal block 1268cee3aa6bSSatish Balay */ 126966976f2fSJacob Faibussowitsch static PetscErrorCode MatGetDiagonal_MPIBAIJ(Mat A, Vec v) 1270d71ae5a4SJacob Faibussowitsch { 1271d64ed03dSBarry Smith PetscFunctionBegin; 12725f80ce2aSJacob Faibussowitsch PetscCheck(A->rmap->N == A->cmap->N, PETSC_COMM_SELF, PETSC_ERR_SUP, "Supports only square matrix where A->A is diag block"); 12739566063dSJacob Faibussowitsch PetscCall(MatGetDiagonal(((Mat_MPIBAIJ *)A->data)->A, v)); 12743ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1275cee3aa6bSSatish Balay } 1276cee3aa6bSSatish Balay 127766976f2fSJacob Faibussowitsch static PetscErrorCode MatScale_MPIBAIJ(Mat A, PetscScalar aa) 1278d71ae5a4SJacob Faibussowitsch { 1279cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 1280d64ed03dSBarry Smith 1281d64ed03dSBarry Smith PetscFunctionBegin; 12829566063dSJacob Faibussowitsch PetscCall(MatScale(a->A, aa)); 12839566063dSJacob Faibussowitsch PetscCall(MatScale(a->B, aa)); 12843ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1285cee3aa6bSSatish Balay } 1286026e39d0SSatish Balay 1287d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetRow_MPIBAIJ(Mat matin, PetscInt row, PetscInt *nz, PetscInt **idx, PetscScalar **v) 1288d71ae5a4SJacob Faibussowitsch { 1289acdf5bf4SSatish Balay Mat_MPIBAIJ *mat = (Mat_MPIBAIJ *)matin->data; 129087828ca2SBarry Smith PetscScalar *vworkA, *vworkB, **pvA, **pvB, *v_p; 1291d0f46423SBarry Smith PetscInt bs = matin->rmap->bs, bs2 = mat->bs2, i, *cworkA, *cworkB, **pcA, **pcB; 1292d0f46423SBarry Smith PetscInt nztot, nzA, nzB, lrow, brstart = matin->rmap->rstart, brend = matin->rmap->rend; 1293899cda47SBarry Smith PetscInt *cmap, *idx_p, cstart = mat->cstartbs; 1294acdf5bf4SSatish Balay 1295d64ed03dSBarry Smith PetscFunctionBegin; 12965f80ce2aSJacob Faibussowitsch PetscCheck(row >= brstart && row < brend, PETSC_COMM_SELF, PETSC_ERR_SUP, "Only local rows"); 12975f80ce2aSJacob Faibussowitsch PetscCheck(!mat->getrowactive, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Already active"); 1298acdf5bf4SSatish Balay mat->getrowactive = PETSC_TRUE; 1299acdf5bf4SSatish Balay 1300acdf5bf4SSatish Balay if (!mat->rowvalues && (idx || v)) { 1301acdf5bf4SSatish Balay /* 1302acdf5bf4SSatish Balay allocate enough space to hold information from the longest row. 1303acdf5bf4SSatish Balay */ 1304acdf5bf4SSatish Balay Mat_SeqBAIJ *Aa = (Mat_SeqBAIJ *)mat->A->data, *Ba = (Mat_SeqBAIJ *)mat->B->data; 1305b24ad042SBarry Smith PetscInt max = 1, mbs = mat->mbs, tmp; 1306bd16c2feSSatish Balay for (i = 0; i < mbs; i++) { 1307acdf5bf4SSatish Balay tmp = Aa->i[i + 1] - Aa->i[i] + Ba->i[i + 1] - Ba->i[i]; 130826fbe8dcSKarl Rupp if (max < tmp) max = tmp; 1309acdf5bf4SSatish Balay } 13109566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(max * bs2, &mat->rowvalues, max * bs2, &mat->rowindices)); 1311acdf5bf4SSatish Balay } 1312d9d09a02SSatish Balay lrow = row - brstart; 1313acdf5bf4SSatish Balay 13149371c9d4SSatish Balay pvA = &vworkA; 13159371c9d4SSatish Balay pcA = &cworkA; 13169371c9d4SSatish Balay pvB = &vworkB; 13179371c9d4SSatish Balay pcB = &cworkB; 13189371c9d4SSatish Balay if (!v) { 13199371c9d4SSatish Balay pvA = NULL; 13209371c9d4SSatish Balay pvB = NULL; 13219371c9d4SSatish Balay } 13229371c9d4SSatish Balay if (!idx) { 13239371c9d4SSatish Balay pcA = NULL; 13249371c9d4SSatish Balay if (!v) pcB = NULL; 13259371c9d4SSatish Balay } 13269566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->getrow)(mat->A, lrow, &nzA, pcA, pvA)); 13279566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->getrow)(mat->B, lrow, &nzB, pcB, pvB)); 1328acdf5bf4SSatish Balay nztot = nzA + nzB; 1329acdf5bf4SSatish Balay 1330acdf5bf4SSatish Balay cmap = mat->garray; 1331acdf5bf4SSatish Balay if (v || idx) { 1332acdf5bf4SSatish Balay if (nztot) { 1333acdf5bf4SSatish Balay /* Sort by increasing column numbers, assuming A and B already sorted */ 1334b24ad042SBarry Smith PetscInt imark = -1; 1335acdf5bf4SSatish Balay if (v) { 1336acdf5bf4SSatish Balay *v = v_p = mat->rowvalues; 1337acdf5bf4SSatish Balay for (i = 0; i < nzB; i++) { 1338d9d09a02SSatish Balay if (cmap[cworkB[i] / bs] < cstart) v_p[i] = vworkB[i]; 1339acdf5bf4SSatish Balay else break; 1340acdf5bf4SSatish Balay } 1341acdf5bf4SSatish Balay imark = i; 1342acdf5bf4SSatish Balay for (i = 0; i < nzA; i++) v_p[imark + i] = vworkA[i]; 1343acdf5bf4SSatish Balay for (i = imark; i < nzB; i++) v_p[nzA + i] = vworkB[i]; 1344acdf5bf4SSatish Balay } 1345acdf5bf4SSatish Balay if (idx) { 1346acdf5bf4SSatish Balay *idx = idx_p = mat->rowindices; 1347acdf5bf4SSatish Balay if (imark > -1) { 1348ad540459SPierre Jolivet for (i = 0; i < imark; i++) idx_p[i] = cmap[cworkB[i] / bs] * bs + cworkB[i] % bs; 1349acdf5bf4SSatish Balay } else { 1350acdf5bf4SSatish Balay for (i = 0; i < nzB; i++) { 135126fbe8dcSKarl Rupp if (cmap[cworkB[i] / bs] < cstart) idx_p[i] = cmap[cworkB[i] / bs] * bs + cworkB[i] % bs; 1352acdf5bf4SSatish Balay else break; 1353acdf5bf4SSatish Balay } 1354acdf5bf4SSatish Balay imark = i; 1355acdf5bf4SSatish Balay } 1356d9d09a02SSatish Balay for (i = 0; i < nzA; i++) idx_p[imark + i] = cstart * bs + cworkA[i]; 1357d9d09a02SSatish Balay for (i = imark; i < nzB; i++) idx_p[nzA + i] = cmap[cworkB[i] / bs] * bs + cworkB[i] % bs; 1358acdf5bf4SSatish Balay } 1359d64ed03dSBarry Smith } else { 1360f4259b30SLisandro Dalcin if (idx) *idx = NULL; 1361f4259b30SLisandro Dalcin if (v) *v = NULL; 1362d212a18eSSatish Balay } 1363acdf5bf4SSatish Balay } 1364acdf5bf4SSatish Balay *nz = nztot; 13659566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->restorerow)(mat->A, lrow, &nzA, pcA, pvA)); 13669566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->restorerow)(mat->B, lrow, &nzB, pcB, pvB)); 13673ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1368acdf5bf4SSatish Balay } 1369acdf5bf4SSatish Balay 1370d71ae5a4SJacob Faibussowitsch PetscErrorCode MatRestoreRow_MPIBAIJ(Mat mat, PetscInt row, PetscInt *nz, PetscInt **idx, PetscScalar **v) 1371d71ae5a4SJacob Faibussowitsch { 1372acdf5bf4SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 1373d64ed03dSBarry Smith 1374d64ed03dSBarry Smith PetscFunctionBegin; 13755f80ce2aSJacob Faibussowitsch PetscCheck(baij->getrowactive, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "MatGetRow not called"); 1376acdf5bf4SSatish Balay baij->getrowactive = PETSC_FALSE; 13773ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1378acdf5bf4SSatish Balay } 1379acdf5bf4SSatish Balay 138066976f2fSJacob Faibussowitsch static PetscErrorCode MatZeroEntries_MPIBAIJ(Mat A) 1381d71ae5a4SJacob Faibussowitsch { 138258667388SSatish Balay Mat_MPIBAIJ *l = (Mat_MPIBAIJ *)A->data; 1383d64ed03dSBarry Smith 1384d64ed03dSBarry Smith PetscFunctionBegin; 13859566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(l->A)); 13869566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(l->B)); 13873ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 138858667388SSatish Balay } 13890ac07820SSatish Balay 139066976f2fSJacob Faibussowitsch static PetscErrorCode MatGetInfo_MPIBAIJ(Mat matin, MatInfoType flag, MatInfo *info) 1391d71ae5a4SJacob Faibussowitsch { 13924e220ebcSLois Curfman McInnes Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)matin->data; 13934e220ebcSLois Curfman McInnes Mat A = a->A, B = a->B; 13943966268fSBarry Smith PetscLogDouble isend[5], irecv[5]; 13950ac07820SSatish Balay 1396d64ed03dSBarry Smith PetscFunctionBegin; 1397d0f46423SBarry Smith info->block_size = (PetscReal)matin->rmap->bs; 139826fbe8dcSKarl Rupp 13999566063dSJacob Faibussowitsch PetscCall(MatGetInfo(A, MAT_LOCAL, info)); 140026fbe8dcSKarl Rupp 14019371c9d4SSatish Balay isend[0] = info->nz_used; 14029371c9d4SSatish Balay isend[1] = info->nz_allocated; 14039371c9d4SSatish Balay isend[2] = info->nz_unneeded; 14049371c9d4SSatish Balay isend[3] = info->memory; 14059371c9d4SSatish Balay isend[4] = info->mallocs; 140626fbe8dcSKarl Rupp 14079566063dSJacob Faibussowitsch PetscCall(MatGetInfo(B, MAT_LOCAL, info)); 140826fbe8dcSKarl Rupp 14099371c9d4SSatish Balay isend[0] += info->nz_used; 14109371c9d4SSatish Balay isend[1] += info->nz_allocated; 14119371c9d4SSatish Balay isend[2] += info->nz_unneeded; 14129371c9d4SSatish Balay isend[3] += info->memory; 14139371c9d4SSatish Balay isend[4] += info->mallocs; 141426fbe8dcSKarl Rupp 14150ac07820SSatish Balay if (flag == MAT_LOCAL) { 14164e220ebcSLois Curfman McInnes info->nz_used = isend[0]; 14174e220ebcSLois Curfman McInnes info->nz_allocated = isend[1]; 14184e220ebcSLois Curfman McInnes info->nz_unneeded = isend[2]; 14194e220ebcSLois Curfman McInnes info->memory = isend[3]; 14204e220ebcSLois Curfman McInnes info->mallocs = isend[4]; 14210ac07820SSatish Balay } else if (flag == MAT_GLOBAL_MAX) { 14221c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(isend, irecv, 5, MPIU_PETSCLOGDOUBLE, MPI_MAX, PetscObjectComm((PetscObject)matin))); 142326fbe8dcSKarl Rupp 14244e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 14254e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 14264e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 14274e220ebcSLois Curfman McInnes info->memory = irecv[3]; 14284e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 14290ac07820SSatish Balay } else if (flag == MAT_GLOBAL_SUM) { 14301c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(isend, irecv, 5, MPIU_PETSCLOGDOUBLE, MPI_SUM, PetscObjectComm((PetscObject)matin))); 143126fbe8dcSKarl Rupp 14324e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 14334e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 14344e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 14354e220ebcSLois Curfman McInnes info->memory = irecv[3]; 14364e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 143798921bdaSJacob Faibussowitsch } else SETERRQ(PetscObjectComm((PetscObject)matin), PETSC_ERR_ARG_WRONG, "Unknown MatInfoType argument %d", (int)flag); 14384e220ebcSLois Curfman McInnes info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */ 14394e220ebcSLois Curfman McInnes info->fill_ratio_needed = 0; 14404e220ebcSLois Curfman McInnes info->factor_mallocs = 0; 14413ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 14420ac07820SSatish Balay } 14430ac07820SSatish Balay 144466976f2fSJacob Faibussowitsch static PetscErrorCode MatSetOption_MPIBAIJ(Mat A, MatOption op, PetscBool flg) 1445d71ae5a4SJacob Faibussowitsch { 144658667388SSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 144758667388SSatish Balay 1448d64ed03dSBarry Smith PetscFunctionBegin; 144912c028f9SKris Buschelman switch (op) { 1450512a5fc5SBarry Smith case MAT_NEW_NONZERO_LOCATIONS: 145112c028f9SKris Buschelman case MAT_NEW_NONZERO_ALLOCATION_ERR: 145228b2fa4aSMatthew Knepley case MAT_UNUSED_NONZERO_LOCATION_ERR: 1453a9817697SBarry Smith case MAT_KEEP_NONZERO_PATTERN: 145412c028f9SKris Buschelman case MAT_NEW_NONZERO_LOCATION_ERR: 145543674050SBarry Smith MatCheckPreallocated(A, 1); 14569566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->A, op, flg)); 14579566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->B, op, flg)); 145812c028f9SKris Buschelman break; 145912c028f9SKris Buschelman case MAT_ROW_ORIENTED: 146043674050SBarry Smith MatCheckPreallocated(A, 1); 14614e0d8c25SBarry Smith a->roworiented = flg; 146226fbe8dcSKarl Rupp 14639566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->A, op, flg)); 14649566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->B, op, flg)); 146512c028f9SKris Buschelman break; 14668c78258cSHong Zhang case MAT_FORCE_DIAGONAL_ENTRIES: 1467d71ae5a4SJacob Faibussowitsch case MAT_SORTED_FULL: 1468d71ae5a4SJacob Faibussowitsch PetscCall(PetscInfo(A, "Option %s ignored\n", MatOptions[op])); 1469d71ae5a4SJacob Faibussowitsch break; 1470d71ae5a4SJacob Faibussowitsch case MAT_IGNORE_OFF_PROC_ENTRIES: 1471d71ae5a4SJacob Faibussowitsch a->donotstash = flg; 1472d71ae5a4SJacob Faibussowitsch break; 147312c028f9SKris Buschelman case MAT_USE_HASH_TABLE: 14744e0d8c25SBarry Smith a->ht_flag = flg; 1475abf3b562SBarry Smith a->ht_fact = 1.39; 147612c028f9SKris Buschelman break; 147777e54ba9SKris Buschelman case MAT_SYMMETRIC: 147877e54ba9SKris Buschelman case MAT_STRUCTURALLY_SYMMETRIC: 14792188ac68SBarry Smith case MAT_HERMITIAN: 1480c10200c1SHong Zhang case MAT_SUBMAT_SINGLEIS: 14812188ac68SBarry Smith case MAT_SYMMETRY_ETERNAL: 1482b94d7dedSBarry Smith case MAT_STRUCTURAL_SYMMETRY_ETERNAL: 1483b94d7dedSBarry Smith case MAT_SPD_ETERNAL: 1484b94d7dedSBarry Smith /* if the diagonal matrix is square it inherits some of the properties above */ 148577e54ba9SKris Buschelman break; 1486d71ae5a4SJacob Faibussowitsch default: 1487d71ae5a4SJacob Faibussowitsch SETERRQ(PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "unknown option %d", op); 1488d64ed03dSBarry Smith } 14893ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 149058667388SSatish Balay } 149158667388SSatish Balay 149266976f2fSJacob Faibussowitsch static PetscErrorCode MatTranspose_MPIBAIJ(Mat A, MatReuse reuse, Mat *matout) 1493d71ae5a4SJacob Faibussowitsch { 14940ac07820SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)A->data; 14950ac07820SSatish Balay Mat_SeqBAIJ *Aloc; 14960ac07820SSatish Balay Mat B; 1497d0f46423SBarry Smith PetscInt M = A->rmap->N, N = A->cmap->N, *ai, *aj, i, *rvals, j, k, col; 1498d0f46423SBarry Smith PetscInt bs = A->rmap->bs, mbs = baij->mbs; 14993eda8832SBarry Smith MatScalar *a; 15000ac07820SSatish Balay 1501d64ed03dSBarry Smith PetscFunctionBegin; 15027fb60732SBarry Smith if (reuse == MAT_REUSE_MATRIX) PetscCall(MatTransposeCheckNonzeroState_Private(A, *matout)); 1503cf37664fSBarry Smith if (reuse == MAT_INITIAL_MATRIX || reuse == MAT_INPLACE_MATRIX) { 15049566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)A), &B)); 15059566063dSJacob Faibussowitsch PetscCall(MatSetSizes(B, A->cmap->n, A->rmap->n, N, M)); 15069566063dSJacob Faibussowitsch PetscCall(MatSetType(B, ((PetscObject)A)->type_name)); 15072e72b8d9SBarry Smith /* Do not know preallocation information, but must set block size */ 15089566063dSJacob Faibussowitsch PetscCall(MatMPIBAIJSetPreallocation(B, A->rmap->bs, PETSC_DECIDE, NULL, PETSC_DECIDE, NULL)); 1509fc4dec0aSBarry Smith } else { 1510fc4dec0aSBarry Smith B = *matout; 1511fc4dec0aSBarry Smith } 15120ac07820SSatish Balay 15130ac07820SSatish Balay /* copy over the A part */ 15140ac07820SSatish Balay Aloc = (Mat_SeqBAIJ *)baij->A->data; 15159371c9d4SSatish Balay ai = Aloc->i; 15169371c9d4SSatish Balay aj = Aloc->j; 15179371c9d4SSatish Balay a = Aloc->a; 15189566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(bs, &rvals)); 15190ac07820SSatish Balay 15200ac07820SSatish Balay for (i = 0; i < mbs; i++) { 1521899cda47SBarry Smith rvals[0] = bs * (baij->rstartbs + i); 152226fbe8dcSKarl Rupp for (j = 1; j < bs; j++) rvals[j] = rvals[j - 1] + 1; 15230ac07820SSatish Balay for (j = ai[i]; j < ai[i + 1]; j++) { 1524899cda47SBarry Smith col = (baij->cstartbs + aj[j]) * bs; 15250ac07820SSatish Balay for (k = 0; k < bs; k++) { 15269566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPIBAIJ(B, 1, &col, bs, rvals, a, INSERT_VALUES)); 152726fbe8dcSKarl Rupp 15289371c9d4SSatish Balay col++; 15299371c9d4SSatish Balay a += bs; 15300ac07820SSatish Balay } 15310ac07820SSatish Balay } 15320ac07820SSatish Balay } 15330ac07820SSatish Balay /* copy over the B part */ 15340ac07820SSatish Balay Aloc = (Mat_SeqBAIJ *)baij->B->data; 15359371c9d4SSatish Balay ai = Aloc->i; 15369371c9d4SSatish Balay aj = Aloc->j; 15379371c9d4SSatish Balay a = Aloc->a; 15380ac07820SSatish Balay for (i = 0; i < mbs; i++) { 1539899cda47SBarry Smith rvals[0] = bs * (baij->rstartbs + i); 154026fbe8dcSKarl Rupp for (j = 1; j < bs; j++) rvals[j] = rvals[j - 1] + 1; 15410ac07820SSatish Balay for (j = ai[i]; j < ai[i + 1]; j++) { 15420ac07820SSatish Balay col = baij->garray[aj[j]] * bs; 15430ac07820SSatish Balay for (k = 0; k < bs; k++) { 15449566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPIBAIJ(B, 1, &col, bs, rvals, a, INSERT_VALUES)); 154526fbe8dcSKarl Rupp col++; 154626fbe8dcSKarl Rupp a += bs; 15470ac07820SSatish Balay } 15480ac07820SSatish Balay } 15490ac07820SSatish Balay } 15509566063dSJacob Faibussowitsch PetscCall(PetscFree(rvals)); 15519566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY)); 15529566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY)); 15530ac07820SSatish Balay 1554cf37664fSBarry Smith if (reuse == MAT_INITIAL_MATRIX || reuse == MAT_REUSE_MATRIX) *matout = B; 155548a46eb9SPierre Jolivet else PetscCall(MatHeaderMerge(A, &B)); 15563ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 15570ac07820SSatish Balay } 15580e95ebc0SSatish Balay 155966976f2fSJacob Faibussowitsch static PetscErrorCode MatDiagonalScale_MPIBAIJ(Mat mat, Vec ll, Vec rr) 1560d71ae5a4SJacob Faibussowitsch { 156136c4a09eSSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 156236c4a09eSSatish Balay Mat a = baij->A, b = baij->B; 1563b24ad042SBarry Smith PetscInt s1, s2, s3; 15640e95ebc0SSatish Balay 1565d64ed03dSBarry Smith PetscFunctionBegin; 15669566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(mat, &s2, &s3)); 156736c4a09eSSatish Balay if (rr) { 15689566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(rr, &s1)); 15695f80ce2aSJacob Faibussowitsch PetscCheck(s1 == s3, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "right vector non-conforming local size"); 157036c4a09eSSatish Balay /* Overlap communication with computation. */ 15719566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(baij->Mvctx, rr, baij->lvec, INSERT_VALUES, SCATTER_FORWARD)); 157236c4a09eSSatish Balay } 15730e95ebc0SSatish Balay if (ll) { 15749566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(ll, &s1)); 15755f80ce2aSJacob Faibussowitsch PetscCheck(s1 == s2, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "left vector non-conforming local size"); 1576dbbe0bcdSBarry Smith PetscUseTypeMethod(b, diagonalscale, ll, NULL); 15770e95ebc0SSatish Balay } 157836c4a09eSSatish Balay /* scale the diagonal block */ 1579dbbe0bcdSBarry Smith PetscUseTypeMethod(a, diagonalscale, ll, rr); 158036c4a09eSSatish Balay 158136c4a09eSSatish Balay if (rr) { 158236c4a09eSSatish Balay /* Do a scatter end and then right scale the off-diagonal block */ 15839566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(baij->Mvctx, rr, baij->lvec, INSERT_VALUES, SCATTER_FORWARD)); 1584dbbe0bcdSBarry Smith PetscUseTypeMethod(b, diagonalscale, NULL, baij->lvec); 158536c4a09eSSatish Balay } 15863ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 15870e95ebc0SSatish Balay } 15880e95ebc0SSatish Balay 158966976f2fSJacob Faibussowitsch static PetscErrorCode MatZeroRows_MPIBAIJ(Mat A, PetscInt N, const PetscInt rows[], PetscScalar diag, Vec x, Vec b) 1590d71ae5a4SJacob Faibussowitsch { 15910ac07820SSatish Balay Mat_MPIBAIJ *l = (Mat_MPIBAIJ *)A->data; 159265a92638SMatthew G. Knepley PetscInt *lrows; 15936e520ac8SStefano Zampini PetscInt r, len; 159494342113SStefano Zampini PetscBool cong; 15950ac07820SSatish Balay 1596d64ed03dSBarry Smith PetscFunctionBegin; 15976e520ac8SStefano Zampini /* get locally owned rows */ 15989566063dSJacob Faibussowitsch PetscCall(MatZeroRowsMapLocal_Private(A, N, rows, &len, &lrows)); 1599dd8e379bSPierre Jolivet /* fix right-hand side if needed */ 160097b48c8fSBarry Smith if (x && b) { 160165a92638SMatthew G. Knepley const PetscScalar *xx; 160265a92638SMatthew G. Knepley PetscScalar *bb; 160365a92638SMatthew G. Knepley 16049566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(x, &xx)); 16059566063dSJacob Faibussowitsch PetscCall(VecGetArray(b, &bb)); 160665a92638SMatthew G. Knepley for (r = 0; r < len; ++r) bb[lrows[r]] = diag * xx[lrows[r]]; 16079566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(x, &xx)); 16089566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(b, &bb)); 160997b48c8fSBarry Smith } 161097b48c8fSBarry Smith 16110ac07820SSatish Balay /* actually zap the local rows */ 161272dacd9aSBarry Smith /* 161372dacd9aSBarry Smith Zero the required rows. If the "diagonal block" of the matrix 1614a8c7a070SBarry Smith is square and the user wishes to set the diagonal we use separate 161572dacd9aSBarry Smith code so that MatSetValues() is not called for each diagonal allocating 161672dacd9aSBarry Smith new memory, thus calling lots of mallocs and slowing things down. 161772dacd9aSBarry Smith 161872dacd9aSBarry Smith */ 16199c957beeSSatish Balay /* must zero l->B before l->A because the (diag) case below may put values into l->B*/ 16209566063dSJacob Faibussowitsch PetscCall(MatZeroRows_SeqBAIJ(l->B, len, lrows, 0.0, NULL, NULL)); 16219566063dSJacob Faibussowitsch PetscCall(MatHasCongruentLayouts(A, &cong)); 162294342113SStefano Zampini if ((diag != 0.0) && cong) { 16239566063dSJacob Faibussowitsch PetscCall(MatZeroRows_SeqBAIJ(l->A, len, lrows, diag, NULL, NULL)); 1624f4df32b1SMatthew Knepley } else if (diag != 0.0) { 16259566063dSJacob Faibussowitsch PetscCall(MatZeroRows_SeqBAIJ(l->A, len, lrows, 0.0, NULL, NULL)); 162600045ab3SPierre Jolivet PetscCheck(!((Mat_SeqBAIJ *)l->A->data)->nonew, PETSC_COMM_SELF, PETSC_ERR_SUP, "MatZeroRows() on rectangular matrices cannot be used with the Mat options MAT_NEW_NONZERO_LOCATIONS, MAT_NEW_NONZERO_LOCATION_ERR, and MAT_NEW_NONZERO_ALLOCATION_ERR"); 162765a92638SMatthew G. Knepley for (r = 0; r < len; ++r) { 162865a92638SMatthew G. Knepley const PetscInt row = lrows[r] + A->rmap->rstart; 16299566063dSJacob Faibussowitsch PetscCall(MatSetValues(A, 1, &row, 1, &row, &diag, INSERT_VALUES)); 1630a07cd24cSSatish Balay } 16319566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(A, MAT_FINAL_ASSEMBLY)); 16329566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(A, MAT_FINAL_ASSEMBLY)); 16339c957beeSSatish Balay } else { 16349566063dSJacob Faibussowitsch PetscCall(MatZeroRows_SeqBAIJ(l->A, len, lrows, 0.0, NULL, NULL)); 1635a07cd24cSSatish Balay } 16369566063dSJacob Faibussowitsch PetscCall(PetscFree(lrows)); 16374f9cfa9eSBarry Smith 16384f9cfa9eSBarry Smith /* only change matrix nonzero state if pattern was allowed to be changed */ 1639f4f49eeaSPierre Jolivet if (!((Mat_SeqBAIJ *)l->A->data)->keepnonzeropattern || !((Mat_SeqBAIJ *)l->A->data)->nonew) { 1640e56f5c9eSBarry Smith PetscObjectState state = l->A->nonzerostate + l->B->nonzerostate; 16411c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&state, &A->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)A))); 1642e56f5c9eSBarry Smith } 16433ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 16440ac07820SSatish Balay } 164572dacd9aSBarry Smith 164666976f2fSJacob Faibussowitsch static PetscErrorCode MatZeroRowsColumns_MPIBAIJ(Mat A, PetscInt N, const PetscInt rows[], PetscScalar diag, Vec x, Vec b) 1647d71ae5a4SJacob Faibussowitsch { 16486f0a72daSMatthew G. Knepley Mat_MPIBAIJ *l = (Mat_MPIBAIJ *)A->data; 1649131c27b5Sprj- PetscMPIInt n = A->rmap->n, p = 0; 1650131c27b5Sprj- PetscInt i, j, k, r, len = 0, row, col, count; 16516f0a72daSMatthew G. Knepley PetscInt *lrows, *owners = A->rmap->range; 16526f0a72daSMatthew G. Knepley PetscSFNode *rrows; 16536f0a72daSMatthew G. Knepley PetscSF sf; 16546f0a72daSMatthew G. Knepley const PetscScalar *xx; 16556f0a72daSMatthew G. Knepley PetscScalar *bb, *mask; 16566f0a72daSMatthew G. Knepley Vec xmask, lmask; 16576f0a72daSMatthew G. Knepley Mat_SeqBAIJ *baij = (Mat_SeqBAIJ *)l->B->data; 16586f0a72daSMatthew G. Knepley PetscInt bs = A->rmap->bs, bs2 = baij->bs2; 16596f0a72daSMatthew G. Knepley PetscScalar *aa; 16606f0a72daSMatthew G. Knepley 16616f0a72daSMatthew G. Knepley PetscFunctionBegin; 16626f0a72daSMatthew G. Knepley /* Create SF where leaves are input rows and roots are owned rows */ 16639566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(n, &lrows)); 16646f0a72daSMatthew G. Knepley for (r = 0; r < n; ++r) lrows[r] = -1; 16659566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(N, &rrows)); 16666f0a72daSMatthew G. Knepley for (r = 0; r < N; ++r) { 16676f0a72daSMatthew G. Knepley const PetscInt idx = rows[r]; 16685f80ce2aSJacob Faibussowitsch PetscCheck(idx >= 0 && A->rmap->N > idx, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row %" PetscInt_FMT " out of range [0,%" PetscInt_FMT ")", idx, A->rmap->N); 16695ba17502SJed Brown if (idx < owners[p] || owners[p + 1] <= idx) { /* short-circuit the search if the last p owns this row too */ 16709566063dSJacob Faibussowitsch PetscCall(PetscLayoutFindOwner(A->rmap, idx, &p)); 16715ba17502SJed Brown } 16726f0a72daSMatthew G. Knepley rrows[r].rank = p; 16736f0a72daSMatthew G. Knepley rrows[r].index = rows[r] - owners[p]; 16746f0a72daSMatthew G. Knepley } 16759566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)A), &sf)); 16769566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(sf, n, N, NULL, PETSC_OWN_POINTER, rrows, PETSC_OWN_POINTER)); 16776f0a72daSMatthew G. Knepley /* Collect flags for rows to be zeroed */ 16789566063dSJacob Faibussowitsch PetscCall(PetscSFReduceBegin(sf, MPIU_INT, (PetscInt *)rows, lrows, MPI_LOR)); 16799566063dSJacob Faibussowitsch PetscCall(PetscSFReduceEnd(sf, MPIU_INT, (PetscInt *)rows, lrows, MPI_LOR)); 16809566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&sf)); 16816f0a72daSMatthew G. Knepley /* Compress and put in row numbers */ 16829371c9d4SSatish Balay for (r = 0; r < n; ++r) 16839371c9d4SSatish Balay if (lrows[r] >= 0) lrows[len++] = r; 16846f0a72daSMatthew G. Knepley /* zero diagonal part of matrix */ 16859566063dSJacob Faibussowitsch PetscCall(MatZeroRowsColumns(l->A, len, lrows, diag, x, b)); 16864cf0e950SBarry Smith /* handle off-diagonal part of matrix */ 16879566063dSJacob Faibussowitsch PetscCall(MatCreateVecs(A, &xmask, NULL)); 16889566063dSJacob Faibussowitsch PetscCall(VecDuplicate(l->lvec, &lmask)); 16899566063dSJacob Faibussowitsch PetscCall(VecGetArray(xmask, &bb)); 16906f0a72daSMatthew G. Knepley for (i = 0; i < len; i++) bb[lrows[i]] = 1; 16919566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(xmask, &bb)); 16929566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(l->Mvctx, xmask, lmask, ADD_VALUES, SCATTER_FORWARD)); 16939566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(l->Mvctx, xmask, lmask, ADD_VALUES, SCATTER_FORWARD)); 16949566063dSJacob Faibussowitsch PetscCall(VecDestroy(&xmask)); 16956f0a72daSMatthew G. Knepley if (x) { 16969566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(l->Mvctx, x, l->lvec, INSERT_VALUES, SCATTER_FORWARD)); 16979566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(l->Mvctx, x, l->lvec, INSERT_VALUES, SCATTER_FORWARD)); 16989566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(l->lvec, &xx)); 16999566063dSJacob Faibussowitsch PetscCall(VecGetArray(b, &bb)); 17006f0a72daSMatthew G. Knepley } 17019566063dSJacob Faibussowitsch PetscCall(VecGetArray(lmask, &mask)); 17024cf0e950SBarry Smith /* remove zeroed rows of off-diagonal matrix */ 17036f0a72daSMatthew G. Knepley for (i = 0; i < len; ++i) { 17046f0a72daSMatthew G. Knepley row = lrows[i]; 17056f0a72daSMatthew G. Knepley count = (baij->i[row / bs + 1] - baij->i[row / bs]) * bs; 1706f4f49eeaSPierre Jolivet aa = ((MatScalar *)baij->a) + baij->i[row / bs] * bs2 + (row % bs); 17076f0a72daSMatthew G. Knepley for (k = 0; k < count; ++k) { 17086f0a72daSMatthew G. Knepley aa[0] = 0.0; 17096f0a72daSMatthew G. Knepley aa += bs; 17106f0a72daSMatthew G. Knepley } 17116f0a72daSMatthew G. Knepley } 17126f0a72daSMatthew G. Knepley /* loop over all elements of off process part of matrix zeroing removed columns*/ 17136f0a72daSMatthew G. Knepley for (i = 0; i < l->B->rmap->N; ++i) { 17146f0a72daSMatthew G. Knepley row = i / bs; 17156f0a72daSMatthew G. Knepley for (j = baij->i[row]; j < baij->i[row + 1]; ++j) { 17166f0a72daSMatthew G. Knepley for (k = 0; k < bs; ++k) { 17176f0a72daSMatthew G. Knepley col = bs * baij->j[j] + k; 17186f0a72daSMatthew G. Knepley if (PetscAbsScalar(mask[col])) { 1719f4f49eeaSPierre Jolivet aa = ((MatScalar *)baij->a) + j * bs2 + (i % bs) + bs * k; 172089ae1891SBarry Smith if (x) bb[i] -= aa[0] * xx[col]; 17216f0a72daSMatthew G. Knepley aa[0] = 0.0; 17226f0a72daSMatthew G. Knepley } 17236f0a72daSMatthew G. Knepley } 17246f0a72daSMatthew G. Knepley } 17256f0a72daSMatthew G. Knepley } 17266f0a72daSMatthew G. Knepley if (x) { 17279566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(b, &bb)); 17289566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(l->lvec, &xx)); 17296f0a72daSMatthew G. Knepley } 17309566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(lmask, &mask)); 17319566063dSJacob Faibussowitsch PetscCall(VecDestroy(&lmask)); 17329566063dSJacob Faibussowitsch PetscCall(PetscFree(lrows)); 17334f9cfa9eSBarry Smith 17344f9cfa9eSBarry Smith /* only change matrix nonzero state if pattern was allowed to be changed */ 1735f4f49eeaSPierre Jolivet if (!((Mat_SeqBAIJ *)l->A->data)->nonew) { 17364f9cfa9eSBarry Smith PetscObjectState state = l->A->nonzerostate + l->B->nonzerostate; 17371c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&state, &A->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)A))); 17384f9cfa9eSBarry Smith } 17393ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 17406f0a72daSMatthew G. Knepley } 17416f0a72daSMatthew G. Knepley 174266976f2fSJacob Faibussowitsch static PetscErrorCode MatSetUnfactored_MPIBAIJ(Mat A) 1743d71ae5a4SJacob Faibussowitsch { 1744bb5a7306SBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 1745d64ed03dSBarry Smith 1746d64ed03dSBarry Smith PetscFunctionBegin; 17479566063dSJacob Faibussowitsch PetscCall(MatSetUnfactored(a->A)); 17483ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1749bb5a7306SBarry Smith } 1750bb5a7306SBarry Smith 17516849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIBAIJ(Mat, MatDuplicateOption, Mat *); 17520ac07820SSatish Balay 175366976f2fSJacob Faibussowitsch static PetscErrorCode MatEqual_MPIBAIJ(Mat A, Mat B, PetscBool *flag) 1754d71ae5a4SJacob Faibussowitsch { 17557fc3c18eSBarry Smith Mat_MPIBAIJ *matB = (Mat_MPIBAIJ *)B->data, *matA = (Mat_MPIBAIJ *)A->data; 17567fc3c18eSBarry Smith Mat a, b, c, d; 1757ace3abfcSBarry Smith PetscBool flg; 17587fc3c18eSBarry Smith 17597fc3c18eSBarry Smith PetscFunctionBegin; 17609371c9d4SSatish Balay a = matA->A; 17619371c9d4SSatish Balay b = matA->B; 17629371c9d4SSatish Balay c = matB->A; 17639371c9d4SSatish Balay d = matB->B; 17647fc3c18eSBarry Smith 17659566063dSJacob Faibussowitsch PetscCall(MatEqual(a, c, &flg)); 176648a46eb9SPierre Jolivet if (flg) PetscCall(MatEqual(b, d, &flg)); 17671c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&flg, flag, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)A))); 17683ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 17697fc3c18eSBarry Smith } 17707fc3c18eSBarry Smith 177166976f2fSJacob Faibussowitsch static PetscErrorCode MatCopy_MPIBAIJ(Mat A, Mat B, MatStructure str) 1772d71ae5a4SJacob Faibussowitsch { 17733c896bc6SHong Zhang Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 17743c896bc6SHong Zhang Mat_MPIBAIJ *b = (Mat_MPIBAIJ *)B->data; 17753c896bc6SHong Zhang 17763c896bc6SHong Zhang PetscFunctionBegin; 17773c896bc6SHong Zhang /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */ 17783c896bc6SHong Zhang if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) { 17799566063dSJacob Faibussowitsch PetscCall(MatCopy_Basic(A, B, str)); 17803c896bc6SHong Zhang } else { 17819566063dSJacob Faibussowitsch PetscCall(MatCopy(a->A, b->A, str)); 17829566063dSJacob Faibussowitsch PetscCall(MatCopy(a->B, b->B, str)); 17833c896bc6SHong Zhang } 17849566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)B)); 17853ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 17863c896bc6SHong Zhang } 1787273d9f13SBarry Smith 1788d71ae5a4SJacob Faibussowitsch PetscErrorCode MatAXPYGetPreallocation_MPIBAIJ(Mat Y, const PetscInt *yltog, Mat X, const PetscInt *xltog, PetscInt *nnz) 1789d71ae5a4SJacob Faibussowitsch { 1790001ddc4fSHong Zhang PetscInt bs = Y->rmap->bs, m = Y->rmap->N / bs; 17914de5dceeSHong Zhang Mat_SeqBAIJ *x = (Mat_SeqBAIJ *)X->data; 17924de5dceeSHong Zhang Mat_SeqBAIJ *y = (Mat_SeqBAIJ *)Y->data; 17934de5dceeSHong Zhang 17944de5dceeSHong Zhang PetscFunctionBegin; 17959566063dSJacob Faibussowitsch PetscCall(MatAXPYGetPreallocation_MPIX_private(m, x->i, x->j, xltog, y->i, y->j, yltog, nnz)); 17963ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 17974de5dceeSHong Zhang } 17984de5dceeSHong Zhang 179966976f2fSJacob Faibussowitsch static PetscErrorCode MatAXPY_MPIBAIJ(Mat Y, PetscScalar a, Mat X, MatStructure str) 1800d71ae5a4SJacob Faibussowitsch { 18014fe895cdSHong Zhang Mat_MPIBAIJ *xx = (Mat_MPIBAIJ *)X->data, *yy = (Mat_MPIBAIJ *)Y->data; 18024fe895cdSHong Zhang PetscBLASInt bnz, one = 1; 18034fe895cdSHong Zhang Mat_SeqBAIJ *x, *y; 1804b31f67cfSBarry Smith PetscInt bs2 = Y->rmap->bs * Y->rmap->bs; 18054fe895cdSHong Zhang 18064fe895cdSHong Zhang PetscFunctionBegin; 18074fe895cdSHong Zhang if (str == SAME_NONZERO_PATTERN) { 18084fe895cdSHong Zhang PetscScalar alpha = a; 18094fe895cdSHong Zhang x = (Mat_SeqBAIJ *)xx->A->data; 18104fe895cdSHong Zhang y = (Mat_SeqBAIJ *)yy->A->data; 18119566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(x->nz * bs2, &bnz)); 1812792fecdfSBarry Smith PetscCallBLAS("BLASaxpy", BLASaxpy_(&bnz, &alpha, x->a, &one, y->a, &one)); 18134fe895cdSHong Zhang x = (Mat_SeqBAIJ *)xx->B->data; 18144fe895cdSHong Zhang y = (Mat_SeqBAIJ *)yy->B->data; 18159566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(x->nz * bs2, &bnz)); 1816792fecdfSBarry Smith PetscCallBLAS("BLASaxpy", BLASaxpy_(&bnz, &alpha, x->a, &one, y->a, &one)); 18179566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)Y)); 1818ab784542SHong Zhang } else if (str == SUBSET_NONZERO_PATTERN) { /* nonzeros of X is a subset of Y's */ 18199566063dSJacob Faibussowitsch PetscCall(MatAXPY_Basic(Y, a, X, str)); 18204fe895cdSHong Zhang } else { 18214de5dceeSHong Zhang Mat B; 18224de5dceeSHong Zhang PetscInt *nnz_d, *nnz_o, bs = Y->rmap->bs; 18239566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(yy->A->rmap->N, &nnz_d)); 18249566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(yy->B->rmap->N, &nnz_o)); 18259566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)Y), &B)); 18269566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)B, ((PetscObject)Y)->name)); 18279566063dSJacob Faibussowitsch PetscCall(MatSetSizes(B, Y->rmap->n, Y->cmap->n, Y->rmap->N, Y->cmap->N)); 18289566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizesFromMats(B, Y, Y)); 18299566063dSJacob Faibussowitsch PetscCall(MatSetType(B, MATMPIBAIJ)); 18309566063dSJacob Faibussowitsch PetscCall(MatAXPYGetPreallocation_SeqBAIJ(yy->A, xx->A, nnz_d)); 18319566063dSJacob Faibussowitsch PetscCall(MatAXPYGetPreallocation_MPIBAIJ(yy->B, yy->garray, xx->B, xx->garray, nnz_o)); 18329566063dSJacob Faibussowitsch PetscCall(MatMPIBAIJSetPreallocation(B, bs, 0, nnz_d, 0, nnz_o)); 18334de5dceeSHong Zhang /* MatAXPY_BasicWithPreallocation() for BAIJ matrix is much slower than AIJ, even for bs=1 ! */ 18349566063dSJacob Faibussowitsch PetscCall(MatAXPY_BasicWithPreallocation(B, Y, a, X, str)); 18359566063dSJacob Faibussowitsch PetscCall(MatHeaderMerge(Y, &B)); 18369566063dSJacob Faibussowitsch PetscCall(PetscFree(nnz_d)); 18379566063dSJacob Faibussowitsch PetscCall(PetscFree(nnz_o)); 18384fe895cdSHong Zhang } 18393ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 18404fe895cdSHong Zhang } 18414fe895cdSHong Zhang 184266976f2fSJacob Faibussowitsch static PetscErrorCode MatConjugate_MPIBAIJ(Mat mat) 1843d71ae5a4SJacob Faibussowitsch { 18445f80ce2aSJacob Faibussowitsch PetscFunctionBegin; 18455f80ce2aSJacob Faibussowitsch if (PetscDefined(USE_COMPLEX)) { 18462726fb6dSPierre Jolivet Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)mat->data; 18472726fb6dSPierre Jolivet 18489566063dSJacob Faibussowitsch PetscCall(MatConjugate_SeqBAIJ(a->A)); 18499566063dSJacob Faibussowitsch PetscCall(MatConjugate_SeqBAIJ(a->B)); 18505f80ce2aSJacob Faibussowitsch } 18513ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 18522726fb6dSPierre Jolivet } 18532726fb6dSPierre Jolivet 185466976f2fSJacob Faibussowitsch static PetscErrorCode MatRealPart_MPIBAIJ(Mat A) 1855d71ae5a4SJacob Faibussowitsch { 185699cafbc1SBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 185799cafbc1SBarry Smith 185899cafbc1SBarry Smith PetscFunctionBegin; 18599566063dSJacob Faibussowitsch PetscCall(MatRealPart(a->A)); 18609566063dSJacob Faibussowitsch PetscCall(MatRealPart(a->B)); 18613ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 186299cafbc1SBarry Smith } 186399cafbc1SBarry Smith 186466976f2fSJacob Faibussowitsch static PetscErrorCode MatImaginaryPart_MPIBAIJ(Mat A) 1865d71ae5a4SJacob Faibussowitsch { 186699cafbc1SBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 186799cafbc1SBarry Smith 186899cafbc1SBarry Smith PetscFunctionBegin; 18699566063dSJacob Faibussowitsch PetscCall(MatImaginaryPart(a->A)); 18709566063dSJacob Faibussowitsch PetscCall(MatImaginaryPart(a->B)); 18713ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 187299cafbc1SBarry Smith } 187399cafbc1SBarry Smith 187466976f2fSJacob Faibussowitsch static PetscErrorCode MatCreateSubMatrix_MPIBAIJ(Mat mat, IS isrow, IS iscol, MatReuse call, Mat *newmat) 1875d71ae5a4SJacob Faibussowitsch { 18764aa3045dSJed Brown IS iscol_local; 18774aa3045dSJed Brown PetscInt csize; 18784aa3045dSJed Brown 18794aa3045dSJed Brown PetscFunctionBegin; 18809566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol, &csize)); 1881b79d0421SJed Brown if (call == MAT_REUSE_MATRIX) { 18829566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*newmat, "ISAllGather", (PetscObject *)&iscol_local)); 18835f80ce2aSJacob Faibussowitsch PetscCheck(iscol_local, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Submatrix passed in was not used before, cannot reuse"); 1884b79d0421SJed Brown } else { 18859566063dSJacob Faibussowitsch PetscCall(ISAllGather(iscol, &iscol_local)); 1886b79d0421SJed Brown } 1887fdfbdca6SPierre Jolivet PetscCall(MatCreateSubMatrix_MPIBAIJ_Private(mat, isrow, iscol_local, csize, call, newmat, PETSC_FALSE)); 1888b79d0421SJed Brown if (call == MAT_INITIAL_MATRIX) { 18899566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)*newmat, "ISAllGather", (PetscObject)iscol_local)); 18909566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscol_local)); 1891b79d0421SJed Brown } 18923ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 18934aa3045dSJed Brown } 189417df9f7cSHong Zhang 189582094794SBarry Smith /* 189682094794SBarry Smith Not great since it makes two copies of the submatrix, first an SeqBAIJ 189782094794SBarry Smith in local and then by concatenating the local matrices the end result. 18987dae84e0SHong Zhang Writing it directly would be much like MatCreateSubMatrices_MPIBAIJ(). 18998f46ffcaSHong Zhang This routine is used for BAIJ and SBAIJ matrices (unfortunate dependency). 190082094794SBarry Smith */ 1901fdfbdca6SPierre Jolivet PetscErrorCode MatCreateSubMatrix_MPIBAIJ_Private(Mat mat, IS isrow, IS iscol, PetscInt csize, MatReuse call, Mat *newmat, PetscBool sym) 1902d71ae5a4SJacob Faibussowitsch { 190382094794SBarry Smith PetscMPIInt rank, size; 190482094794SBarry Smith PetscInt i, m, n, rstart, row, rend, nz, *cwork, j, bs; 1905c9ffca76SHong Zhang PetscInt *ii, *jj, nlocal, *dlens, *olens, dlen, olen, jend, mglobal; 190629dcf524SDmitry Karpeev Mat M, Mreuse; 190782094794SBarry Smith MatScalar *vwork, *aa; 1908ce94432eSBarry Smith MPI_Comm comm; 190929dcf524SDmitry Karpeev IS isrow_new, iscol_new; 191082094794SBarry Smith Mat_SeqBAIJ *aij; 191182094794SBarry Smith 191282094794SBarry Smith PetscFunctionBegin; 19139566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)mat, &comm)); 19149566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 19159566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 191629dcf524SDmitry Karpeev /* The compression and expansion should be avoided. Doesn't point 191729dcf524SDmitry Karpeev out errors, might change the indices, hence buggey */ 19189566063dSJacob Faibussowitsch PetscCall(ISCompressIndicesGeneral(mat->rmap->N, mat->rmap->n, mat->rmap->bs, 1, &isrow, &isrow_new)); 1919864bd19bSPierre Jolivet if (isrow == iscol) { 1920864bd19bSPierre Jolivet iscol_new = isrow_new; 1921864bd19bSPierre Jolivet PetscCall(PetscObjectReference((PetscObject)iscol_new)); 1922864bd19bSPierre Jolivet } else PetscCall(ISCompressIndicesGeneral(mat->cmap->N, mat->cmap->n, mat->cmap->bs, 1, &iscol, &iscol_new)); 192382094794SBarry Smith 192482094794SBarry Smith if (call == MAT_REUSE_MATRIX) { 19259566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*newmat, "SubMatrix", (PetscObject *)&Mreuse)); 19265f80ce2aSJacob Faibussowitsch PetscCheck(Mreuse, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Submatrix passed in was not used before, cannot reuse"); 1927fdfbdca6SPierre Jolivet PetscCall(MatCreateSubMatrices_MPIBAIJ_local(mat, 1, &isrow_new, &iscol_new, MAT_REUSE_MATRIX, &Mreuse, sym)); 192882094794SBarry Smith } else { 1929fdfbdca6SPierre Jolivet PetscCall(MatCreateSubMatrices_MPIBAIJ_local(mat, 1, &isrow_new, &iscol_new, MAT_INITIAL_MATRIX, &Mreuse, sym)); 193082094794SBarry Smith } 19319566063dSJacob Faibussowitsch PetscCall(ISDestroy(&isrow_new)); 19329566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscol_new)); 193382094794SBarry Smith /* 193482094794SBarry Smith m - number of local rows 193582094794SBarry Smith n - number of columns (same on all processors) 193682094794SBarry Smith rstart - first row in new global matrix generated 193782094794SBarry Smith */ 19389566063dSJacob Faibussowitsch PetscCall(MatGetBlockSize(mat, &bs)); 19399566063dSJacob Faibussowitsch PetscCall(MatGetSize(Mreuse, &m, &n)); 194082094794SBarry Smith m = m / bs; 194182094794SBarry Smith n = n / bs; 194282094794SBarry Smith 194382094794SBarry Smith if (call == MAT_INITIAL_MATRIX) { 194482094794SBarry Smith aij = (Mat_SeqBAIJ *)(Mreuse)->data; 194582094794SBarry Smith ii = aij->i; 194682094794SBarry Smith jj = aij->j; 194782094794SBarry Smith 194882094794SBarry Smith /* 194982094794SBarry Smith Determine the number of non-zeros in the diagonal and off-diagonal 195082094794SBarry Smith portions of the matrix in order to do correct preallocation 195182094794SBarry Smith */ 195282094794SBarry Smith 195382094794SBarry Smith /* first get start and end of "diagonal" columns */ 195482094794SBarry Smith if (csize == PETSC_DECIDE) { 19559566063dSJacob Faibussowitsch PetscCall(ISGetSize(isrow, &mglobal)); 195682094794SBarry Smith if (mglobal == n * bs) { /* square matrix */ 195782094794SBarry Smith nlocal = m; 195882094794SBarry Smith } else { 195982094794SBarry Smith nlocal = n / size + ((n % size) > rank); 196082094794SBarry Smith } 196182094794SBarry Smith } else { 196282094794SBarry Smith nlocal = csize / bs; 196382094794SBarry Smith } 19649566063dSJacob Faibussowitsch PetscCallMPI(MPI_Scan(&nlocal, &rend, 1, MPIU_INT, MPI_SUM, comm)); 196582094794SBarry Smith rstart = rend - nlocal; 1966aed4548fSBarry Smith PetscCheck(rank != size - 1 || rend == n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Local column sizes %" PetscInt_FMT " do not add up to total number of columns %" PetscInt_FMT, rend, n); 196782094794SBarry Smith 196882094794SBarry Smith /* next, compute all the lengths */ 19699566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(m + 1, &dlens, m + 1, &olens)); 197082094794SBarry Smith for (i = 0; i < m; i++) { 197182094794SBarry Smith jend = ii[i + 1] - ii[i]; 197282094794SBarry Smith olen = 0; 197382094794SBarry Smith dlen = 0; 197482094794SBarry Smith for (j = 0; j < jend; j++) { 197582094794SBarry Smith if (*jj < rstart || *jj >= rend) olen++; 197682094794SBarry Smith else dlen++; 197782094794SBarry Smith jj++; 197882094794SBarry Smith } 197982094794SBarry Smith olens[i] = olen; 198082094794SBarry Smith dlens[i] = dlen; 198182094794SBarry Smith } 19829566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, &M)); 19839566063dSJacob Faibussowitsch PetscCall(MatSetSizes(M, bs * m, bs * nlocal, PETSC_DECIDE, bs * n)); 1984fdfbdca6SPierre Jolivet PetscCall(MatSetType(M, sym ? ((PetscObject)mat)->type_name : MATMPIBAIJ)); 19859566063dSJacob Faibussowitsch PetscCall(MatMPIBAIJSetPreallocation(M, bs, 0, dlens, 0, olens)); 19869566063dSJacob Faibussowitsch PetscCall(MatMPISBAIJSetPreallocation(M, bs, 0, dlens, 0, olens)); 19879566063dSJacob Faibussowitsch PetscCall(PetscFree2(dlens, olens)); 198882094794SBarry Smith } else { 198982094794SBarry Smith PetscInt ml, nl; 199082094794SBarry Smith 199182094794SBarry Smith M = *newmat; 19929566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(M, &ml, &nl)); 19935f80ce2aSJacob Faibussowitsch PetscCheck(ml == m, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Previous matrix must be same size/layout as request"); 19949566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(M)); 199582094794SBarry Smith /* 199682094794SBarry Smith The next two lines are needed so we may call MatSetValues_MPIAIJ() below directly, 199782094794SBarry Smith rather than the slower MatSetValues(). 199882094794SBarry Smith */ 199982094794SBarry Smith M->was_assembled = PETSC_TRUE; 200082094794SBarry Smith M->assembled = PETSC_FALSE; 200182094794SBarry Smith } 20029566063dSJacob Faibussowitsch PetscCall(MatSetOption(M, MAT_ROW_ORIENTED, PETSC_FALSE)); 20039566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(M, &rstart, &rend)); 200482094794SBarry Smith aij = (Mat_SeqBAIJ *)(Mreuse)->data; 200582094794SBarry Smith ii = aij->i; 200682094794SBarry Smith jj = aij->j; 200782094794SBarry Smith aa = aij->a; 200882094794SBarry Smith for (i = 0; i < m; i++) { 200982094794SBarry Smith row = rstart / bs + i; 201082094794SBarry Smith nz = ii[i + 1] - ii[i]; 20119371c9d4SSatish Balay cwork = jj; 20128e3a54c0SPierre Jolivet jj = PetscSafePointerPlusOffset(jj, nz); 20139371c9d4SSatish Balay vwork = aa; 20148e3a54c0SPierre Jolivet aa = PetscSafePointerPlusOffset(aa, nz * bs * bs); 20159566063dSJacob Faibussowitsch PetscCall(MatSetValuesBlocked_MPIBAIJ(M, 1, &row, nz, cwork, vwork, INSERT_VALUES)); 201682094794SBarry Smith } 201782094794SBarry Smith 20189566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(M, MAT_FINAL_ASSEMBLY)); 20199566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(M, MAT_FINAL_ASSEMBLY)); 202082094794SBarry Smith *newmat = M; 202182094794SBarry Smith 202282094794SBarry Smith /* save submatrix used in processor for next request */ 202382094794SBarry Smith if (call == MAT_INITIAL_MATRIX) { 20249566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)M, "SubMatrix", (PetscObject)Mreuse)); 20259566063dSJacob Faibussowitsch PetscCall(PetscObjectDereference((PetscObject)Mreuse)); 202682094794SBarry Smith } 20273ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 202882094794SBarry Smith } 202982094794SBarry Smith 203066976f2fSJacob Faibussowitsch static PetscErrorCode MatPermute_MPIBAIJ(Mat A, IS rowp, IS colp, Mat *B) 2031d71ae5a4SJacob Faibussowitsch { 203282094794SBarry Smith MPI_Comm comm, pcomm; 2033a0a83eb5SRémi Lacroix PetscInt clocal_size, nrows; 203482094794SBarry Smith const PetscInt *rows; 2035dbf0e21dSBarry Smith PetscMPIInt size; 2036a0a83eb5SRémi Lacroix IS crowp, lcolp; 203782094794SBarry Smith 203882094794SBarry Smith PetscFunctionBegin; 20399566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)A, &comm)); 204082094794SBarry Smith /* make a collective version of 'rowp' */ 20419566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)rowp, &pcomm)); 204282094794SBarry Smith if (pcomm == comm) { 204382094794SBarry Smith crowp = rowp; 204482094794SBarry Smith } else { 20459566063dSJacob Faibussowitsch PetscCall(ISGetSize(rowp, &nrows)); 20469566063dSJacob Faibussowitsch PetscCall(ISGetIndices(rowp, &rows)); 20479566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(comm, nrows, rows, PETSC_COPY_VALUES, &crowp)); 20489566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(rowp, &rows)); 204982094794SBarry Smith } 20509566063dSJacob Faibussowitsch PetscCall(ISSetPermutation(crowp)); 2051a0a83eb5SRémi Lacroix /* make a local version of 'colp' */ 20529566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)colp, &pcomm)); 20539566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(pcomm, &size)); 2054dbf0e21dSBarry Smith if (size == 1) { 205582094794SBarry Smith lcolp = colp; 205682094794SBarry Smith } else { 20579566063dSJacob Faibussowitsch PetscCall(ISAllGather(colp, &lcolp)); 205882094794SBarry Smith } 20599566063dSJacob Faibussowitsch PetscCall(ISSetPermutation(lcolp)); 206075f6568bSJed Brown /* now we just get the submatrix */ 20619566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(A, NULL, &clocal_size)); 2062fdfbdca6SPierre Jolivet PetscCall(MatCreateSubMatrix_MPIBAIJ_Private(A, crowp, lcolp, clocal_size, MAT_INITIAL_MATRIX, B, PETSC_FALSE)); 2063a0a83eb5SRémi Lacroix /* clean up */ 206448a46eb9SPierre Jolivet if (pcomm != comm) PetscCall(ISDestroy(&crowp)); 206548a46eb9SPierre Jolivet if (size > 1) PetscCall(ISDestroy(&lcolp)); 20663ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 206782094794SBarry Smith } 206882094794SBarry Smith 206966976f2fSJacob Faibussowitsch static PetscErrorCode MatGetGhosts_MPIBAIJ(Mat mat, PetscInt *nghosts, const PetscInt *ghosts[]) 2070d71ae5a4SJacob Faibussowitsch { 20718c7482ecSBarry Smith Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 20728c7482ecSBarry Smith Mat_SeqBAIJ *B = (Mat_SeqBAIJ *)baij->B->data; 20738c7482ecSBarry Smith 20748c7482ecSBarry Smith PetscFunctionBegin; 207526fbe8dcSKarl Rupp if (nghosts) *nghosts = B->nbs; 207626fbe8dcSKarl Rupp if (ghosts) *ghosts = baij->garray; 20773ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 20788c7482ecSBarry Smith } 20798c7482ecSBarry Smith 208066976f2fSJacob Faibussowitsch static PetscErrorCode MatGetSeqNonzeroStructure_MPIBAIJ(Mat A, Mat *newmat) 2081d71ae5a4SJacob Faibussowitsch { 2082f6d58c54SBarry Smith Mat B; 2083f6d58c54SBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 2084f6d58c54SBarry Smith Mat_SeqBAIJ *ad = (Mat_SeqBAIJ *)a->A->data, *bd = (Mat_SeqBAIJ *)a->B->data; 2085f6d58c54SBarry Smith Mat_SeqAIJ *b; 2086f4259b30SLisandro Dalcin PetscMPIInt size, rank, *recvcounts = NULL, *displs = NULL; 2087f6d58c54SBarry Smith PetscInt sendcount, i, *rstarts = A->rmap->range, n, cnt, j, bs = A->rmap->bs; 2088f6d58c54SBarry Smith PetscInt m, *garray = a->garray, *lens, *jsendbuf, *a_jsendbuf, *b_jsendbuf; 2089f6d58c54SBarry Smith 2090f6d58c54SBarry Smith PetscFunctionBegin; 20919566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)A), &size)); 20929566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)A), &rank)); 2093f6d58c54SBarry Smith 20942ef1f0ffSBarry Smith /* Tell every processor the number of nonzeros per row */ 20959566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(A->rmap->N / bs, &lens)); 2096ad540459SPierre Jolivet for (i = A->rmap->rstart / bs; i < A->rmap->rend / bs; i++) lens[i] = ad->i[i - A->rmap->rstart / bs + 1] - ad->i[i - A->rmap->rstart / bs] + bd->i[i - A->rmap->rstart / bs + 1] - bd->i[i - A->rmap->rstart / bs]; 20979566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(2 * size, &recvcounts)); 2098f6d58c54SBarry Smith displs = recvcounts + size; 2099f6d58c54SBarry Smith for (i = 0; i < size; i++) { 2100f6d58c54SBarry Smith recvcounts[i] = A->rmap->range[i + 1] / bs - A->rmap->range[i] / bs; 2101f6d58c54SBarry Smith displs[i] = A->rmap->range[i] / bs; 2102f6d58c54SBarry Smith } 21039566063dSJacob Faibussowitsch PetscCallMPI(MPI_Allgatherv(MPI_IN_PLACE, 0, MPI_DATATYPE_NULL, lens, recvcounts, displs, MPIU_INT, PetscObjectComm((PetscObject)A))); 21042ef1f0ffSBarry Smith /* Create the sequential matrix of the same type as the local block diagonal */ 21059566063dSJacob Faibussowitsch PetscCall(MatCreate(PETSC_COMM_SELF, &B)); 21069566063dSJacob Faibussowitsch PetscCall(MatSetSizes(B, A->rmap->N / bs, A->cmap->N / bs, PETSC_DETERMINE, PETSC_DETERMINE)); 21079566063dSJacob Faibussowitsch PetscCall(MatSetType(B, MATSEQAIJ)); 21089566063dSJacob Faibussowitsch PetscCall(MatSeqAIJSetPreallocation(B, 0, lens)); 2109f6d58c54SBarry Smith b = (Mat_SeqAIJ *)B->data; 2110f6d58c54SBarry Smith 21112ef1f0ffSBarry Smith /* Copy my part of matrix column indices over */ 2112f6d58c54SBarry Smith sendcount = ad->nz + bd->nz; 2113f6d58c54SBarry Smith jsendbuf = b->j + b->i[rstarts[rank] / bs]; 2114f6d58c54SBarry Smith a_jsendbuf = ad->j; 2115f6d58c54SBarry Smith b_jsendbuf = bd->j; 2116f6d58c54SBarry Smith n = A->rmap->rend / bs - A->rmap->rstart / bs; 2117f6d58c54SBarry Smith cnt = 0; 2118f6d58c54SBarry Smith for (i = 0; i < n; i++) { 2119f6d58c54SBarry Smith /* put in lower diagonal portion */ 2120f6d58c54SBarry Smith m = bd->i[i + 1] - bd->i[i]; 2121f6d58c54SBarry Smith while (m > 0) { 2122f6d58c54SBarry Smith /* is it above diagonal (in bd (compressed) numbering) */ 2123f6d58c54SBarry Smith if (garray[*b_jsendbuf] > A->rmap->rstart / bs + i) break; 2124f6d58c54SBarry Smith jsendbuf[cnt++] = garray[*b_jsendbuf++]; 2125f6d58c54SBarry Smith m--; 2126f6d58c54SBarry Smith } 2127f6d58c54SBarry Smith 2128f6d58c54SBarry Smith /* put in diagonal portion */ 2129ad540459SPierre Jolivet for (j = ad->i[i]; j < ad->i[i + 1]; j++) jsendbuf[cnt++] = A->rmap->rstart / bs + *a_jsendbuf++; 2130f6d58c54SBarry Smith 2131f6d58c54SBarry Smith /* put in upper diagonal portion */ 2132ad540459SPierre Jolivet while (m-- > 0) jsendbuf[cnt++] = garray[*b_jsendbuf++]; 2133f6d58c54SBarry Smith } 21345f80ce2aSJacob Faibussowitsch PetscCheck(cnt == sendcount, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Corrupted PETSc matrix: nz given %" PetscInt_FMT " actual nz %" PetscInt_FMT, sendcount, cnt); 2135f6d58c54SBarry Smith 21362ef1f0ffSBarry Smith /* Gather all column indices to all processors */ 2137f6d58c54SBarry Smith for (i = 0; i < size; i++) { 2138f6d58c54SBarry Smith recvcounts[i] = 0; 2139ad540459SPierre Jolivet for (j = A->rmap->range[i] / bs; j < A->rmap->range[i + 1] / bs; j++) recvcounts[i] += lens[j]; 2140f6d58c54SBarry Smith } 2141f6d58c54SBarry Smith displs[0] = 0; 2142ad540459SPierre Jolivet for (i = 1; i < size; i++) displs[i] = displs[i - 1] + recvcounts[i - 1]; 21439566063dSJacob Faibussowitsch PetscCallMPI(MPI_Allgatherv(MPI_IN_PLACE, 0, MPI_DATATYPE_NULL, b->j, recvcounts, displs, MPIU_INT, PetscObjectComm((PetscObject)A))); 21445804573cSPierre Jolivet /* Assemble the matrix into usable form (note numerical values not yet set) */ 2145f6d58c54SBarry Smith /* set the b->ilen (length of each row) values */ 21469566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(b->ilen, lens, A->rmap->N / bs)); 2147f6d58c54SBarry Smith /* set the b->i indices */ 2148f6d58c54SBarry Smith b->i[0] = 0; 2149ad540459SPierre Jolivet for (i = 1; i <= A->rmap->N / bs; i++) b->i[i] = b->i[i - 1] + lens[i - 1]; 21509566063dSJacob Faibussowitsch PetscCall(PetscFree(lens)); 21519566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY)); 21529566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY)); 21539566063dSJacob Faibussowitsch PetscCall(PetscFree(recvcounts)); 2154f6d58c54SBarry Smith 2155b94d7dedSBarry Smith PetscCall(MatPropagateSymmetryOptions(A, B)); 2156f6d58c54SBarry Smith *newmat = B; 21573ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2158f6d58c54SBarry Smith } 2159f6d58c54SBarry Smith 216066976f2fSJacob Faibussowitsch static PetscErrorCode MatSOR_MPIBAIJ(Mat matin, Vec bb, PetscReal omega, MatSORType flag, PetscReal fshift, PetscInt its, PetscInt lits, Vec xx) 2161d71ae5a4SJacob Faibussowitsch { 2162b1a666ecSBarry Smith Mat_MPIBAIJ *mat = (Mat_MPIBAIJ *)matin->data; 2163f4259b30SLisandro Dalcin Vec bb1 = NULL; 2164b1a666ecSBarry Smith 2165b1a666ecSBarry Smith PetscFunctionBegin; 2166b1a666ecSBarry Smith if (flag == SOR_APPLY_UPPER) { 21679566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx)); 21683ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2169b1a666ecSBarry Smith } 2170b1a666ecSBarry Smith 217148a46eb9SPierre Jolivet if (its > 1 || ~flag & SOR_ZERO_INITIAL_GUESS) PetscCall(VecDuplicate(bb, &bb1)); 21724e980039SJed Brown 2173b1a666ecSBarry Smith if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP) { 2174b1a666ecSBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 21759566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx)); 2176b1a666ecSBarry Smith its--; 2177b1a666ecSBarry Smith } 2178b1a666ecSBarry Smith 2179b1a666ecSBarry Smith while (its--) { 21809566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 21819566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 2182b1a666ecSBarry Smith 2183b1a666ecSBarry Smith /* update rhs: bb1 = bb - B*x */ 21849566063dSJacob Faibussowitsch PetscCall(VecScale(mat->lvec, -1.0)); 21859566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->multadd)(mat->B, mat->lvec, bb, bb1)); 2186b1a666ecSBarry Smith 2187b1a666ecSBarry Smith /* local sweep */ 21889566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, SOR_SYMMETRIC_SWEEP, fshift, lits, 1, xx)); 2189b1a666ecSBarry Smith } 2190b1a666ecSBarry Smith } else if (flag & SOR_LOCAL_FORWARD_SWEEP) { 2191b1a666ecSBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 21929566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx)); 2193b1a666ecSBarry Smith its--; 2194b1a666ecSBarry Smith } 2195b1a666ecSBarry Smith while (its--) { 21969566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 21979566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 2198b1a666ecSBarry Smith 2199b1a666ecSBarry Smith /* update rhs: bb1 = bb - B*x */ 22009566063dSJacob Faibussowitsch PetscCall(VecScale(mat->lvec, -1.0)); 22019566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->multadd)(mat->B, mat->lvec, bb, bb1)); 2202b1a666ecSBarry Smith 2203b1a666ecSBarry Smith /* local sweep */ 22049566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, SOR_FORWARD_SWEEP, fshift, lits, 1, xx)); 2205b1a666ecSBarry Smith } 2206b1a666ecSBarry Smith } else if (flag & SOR_LOCAL_BACKWARD_SWEEP) { 2207b1a666ecSBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 22089566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx)); 2209b1a666ecSBarry Smith its--; 2210b1a666ecSBarry Smith } 2211b1a666ecSBarry Smith while (its--) { 22129566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 22139566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 2214b1a666ecSBarry Smith 2215b1a666ecSBarry Smith /* update rhs: bb1 = bb - B*x */ 22169566063dSJacob Faibussowitsch PetscCall(VecScale(mat->lvec, -1.0)); 22179566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->multadd)(mat->B, mat->lvec, bb, bb1)); 2218b1a666ecSBarry Smith 2219b1a666ecSBarry Smith /* local sweep */ 22209566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, SOR_BACKWARD_SWEEP, fshift, lits, 1, xx)); 2221b1a666ecSBarry Smith } 2222ce94432eSBarry Smith } else SETERRQ(PetscObjectComm((PetscObject)matin), PETSC_ERR_SUP, "Parallel version of SOR requested not supported"); 2223b1a666ecSBarry Smith 22249566063dSJacob Faibussowitsch PetscCall(VecDestroy(&bb1)); 22253ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2226b1a666ecSBarry Smith } 2227b1a666ecSBarry Smith 222866976f2fSJacob Faibussowitsch static PetscErrorCode MatGetColumnReductions_MPIBAIJ(Mat A, PetscInt type, PetscReal *reductions) 2229d71ae5a4SJacob Faibussowitsch { 223047f7623dSRémi Lacroix Mat_MPIBAIJ *aij = (Mat_MPIBAIJ *)A->data; 2231a873a8cdSSam Reynolds PetscInt m, N, i, *garray = aij->garray; 223247f7623dSRémi Lacroix PetscInt ib, jb, bs = A->rmap->bs; 223347f7623dSRémi Lacroix Mat_SeqBAIJ *a_aij = (Mat_SeqBAIJ *)aij->A->data; 223447f7623dSRémi Lacroix MatScalar *a_val = a_aij->a; 223547f7623dSRémi Lacroix Mat_SeqBAIJ *b_aij = (Mat_SeqBAIJ *)aij->B->data; 223647f7623dSRémi Lacroix MatScalar *b_val = b_aij->a; 223747f7623dSRémi Lacroix PetscReal *work; 223847f7623dSRémi Lacroix 223947f7623dSRémi Lacroix PetscFunctionBegin; 22409566063dSJacob Faibussowitsch PetscCall(MatGetSize(A, &m, &N)); 22419566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(N, &work)); 2242857cbf51SRichard Tran Mills if (type == NORM_2) { 224347f7623dSRémi Lacroix for (i = a_aij->i[0]; i < a_aij->i[aij->A->rmap->n / bs]; i++) { 224447f7623dSRémi Lacroix for (jb = 0; jb < bs; jb++) { 224547f7623dSRémi Lacroix for (ib = 0; ib < bs; ib++) { 224647f7623dSRémi Lacroix work[A->cmap->rstart + a_aij->j[i] * bs + jb] += PetscAbsScalar(*a_val * *a_val); 224747f7623dSRémi Lacroix a_val++; 224847f7623dSRémi Lacroix } 224947f7623dSRémi Lacroix } 225047f7623dSRémi Lacroix } 225147f7623dSRémi Lacroix for (i = b_aij->i[0]; i < b_aij->i[aij->B->rmap->n / bs]; i++) { 225247f7623dSRémi Lacroix for (jb = 0; jb < bs; jb++) { 225347f7623dSRémi Lacroix for (ib = 0; ib < bs; ib++) { 225447f7623dSRémi Lacroix work[garray[b_aij->j[i]] * bs + jb] += PetscAbsScalar(*b_val * *b_val); 225547f7623dSRémi Lacroix b_val++; 225647f7623dSRémi Lacroix } 225747f7623dSRémi Lacroix } 225847f7623dSRémi Lacroix } 2259857cbf51SRichard Tran Mills } else if (type == NORM_1) { 226047f7623dSRémi Lacroix for (i = a_aij->i[0]; i < a_aij->i[aij->A->rmap->n / bs]; i++) { 226147f7623dSRémi Lacroix for (jb = 0; jb < bs; jb++) { 226247f7623dSRémi Lacroix for (ib = 0; ib < bs; ib++) { 226347f7623dSRémi Lacroix work[A->cmap->rstart + a_aij->j[i] * bs + jb] += PetscAbsScalar(*a_val); 226447f7623dSRémi Lacroix a_val++; 226547f7623dSRémi Lacroix } 226647f7623dSRémi Lacroix } 226747f7623dSRémi Lacroix } 226847f7623dSRémi Lacroix for (i = b_aij->i[0]; i < b_aij->i[aij->B->rmap->n / bs]; i++) { 226947f7623dSRémi Lacroix for (jb = 0; jb < bs; jb++) { 227047f7623dSRémi Lacroix for (ib = 0; ib < bs; ib++) { 227147f7623dSRémi Lacroix work[garray[b_aij->j[i]] * bs + jb] += PetscAbsScalar(*b_val); 227247f7623dSRémi Lacroix b_val++; 227347f7623dSRémi Lacroix } 227447f7623dSRémi Lacroix } 227547f7623dSRémi Lacroix } 2276857cbf51SRichard Tran Mills } else if (type == NORM_INFINITY) { 227747f7623dSRémi Lacroix for (i = a_aij->i[0]; i < a_aij->i[aij->A->rmap->n / bs]; i++) { 227847f7623dSRémi Lacroix for (jb = 0; jb < bs; jb++) { 227947f7623dSRémi Lacroix for (ib = 0; ib < bs; ib++) { 228047f7623dSRémi Lacroix int col = A->cmap->rstart + a_aij->j[i] * bs + jb; 228147f7623dSRémi Lacroix work[col] = PetscMax(PetscAbsScalar(*a_val), work[col]); 228247f7623dSRémi Lacroix a_val++; 228347f7623dSRémi Lacroix } 228447f7623dSRémi Lacroix } 228547f7623dSRémi Lacroix } 228647f7623dSRémi Lacroix for (i = b_aij->i[0]; i < b_aij->i[aij->B->rmap->n / bs]; i++) { 228747f7623dSRémi Lacroix for (jb = 0; jb < bs; jb++) { 228847f7623dSRémi Lacroix for (ib = 0; ib < bs; ib++) { 228947f7623dSRémi Lacroix int col = garray[b_aij->j[i]] * bs + jb; 229047f7623dSRémi Lacroix work[col] = PetscMax(PetscAbsScalar(*b_val), work[col]); 229147f7623dSRémi Lacroix b_val++; 229247f7623dSRémi Lacroix } 229347f7623dSRémi Lacroix } 229447f7623dSRémi Lacroix } 2295857cbf51SRichard Tran Mills } else if (type == REDUCTION_SUM_REALPART || type == REDUCTION_MEAN_REALPART) { 2296a873a8cdSSam Reynolds for (i = a_aij->i[0]; i < a_aij->i[aij->A->rmap->n / bs]; i++) { 2297a873a8cdSSam Reynolds for (jb = 0; jb < bs; jb++) { 2298a873a8cdSSam Reynolds for (ib = 0; ib < bs; ib++) { 2299857cbf51SRichard Tran Mills work[A->cmap->rstart + a_aij->j[i] * bs + jb] += PetscRealPart(*a_val); 2300a873a8cdSSam Reynolds a_val++; 2301a873a8cdSSam Reynolds } 2302a873a8cdSSam Reynolds } 2303a873a8cdSSam Reynolds } 2304a873a8cdSSam Reynolds for (i = b_aij->i[0]; i < b_aij->i[aij->B->rmap->n / bs]; i++) { 2305a873a8cdSSam Reynolds for (jb = 0; jb < bs; jb++) { 2306a873a8cdSSam Reynolds for (ib = 0; ib < bs; ib++) { 2307857cbf51SRichard Tran Mills work[garray[b_aij->j[i]] * bs + jb] += PetscRealPart(*b_val); 2308a873a8cdSSam Reynolds b_val++; 2309a873a8cdSSam Reynolds } 2310a873a8cdSSam Reynolds } 2311a873a8cdSSam Reynolds } 2312857cbf51SRichard Tran Mills } else if (type == REDUCTION_SUM_IMAGINARYPART || type == REDUCTION_MEAN_IMAGINARYPART) { 2313857cbf51SRichard Tran Mills for (i = a_aij->i[0]; i < a_aij->i[aij->A->rmap->n / bs]; i++) { 2314857cbf51SRichard Tran Mills for (jb = 0; jb < bs; jb++) { 2315857cbf51SRichard Tran Mills for (ib = 0; ib < bs; ib++) { 2316857cbf51SRichard Tran Mills work[A->cmap->rstart + a_aij->j[i] * bs + jb] += PetscImaginaryPart(*a_val); 2317857cbf51SRichard Tran Mills a_val++; 2318857cbf51SRichard Tran Mills } 2319857cbf51SRichard Tran Mills } 2320857cbf51SRichard Tran Mills } 2321857cbf51SRichard Tran Mills for (i = b_aij->i[0]; i < b_aij->i[aij->B->rmap->n / bs]; i++) { 2322857cbf51SRichard Tran Mills for (jb = 0; jb < bs; jb++) { 2323857cbf51SRichard Tran Mills for (ib = 0; ib < bs; ib++) { 2324857cbf51SRichard Tran Mills work[garray[b_aij->j[i]] * bs + jb] += PetscImaginaryPart(*b_val); 2325857cbf51SRichard Tran Mills b_val++; 2326857cbf51SRichard Tran Mills } 2327857cbf51SRichard Tran Mills } 2328857cbf51SRichard Tran Mills } 2329857cbf51SRichard Tran Mills } else SETERRQ(PetscObjectComm((PetscObject)A), PETSC_ERR_ARG_WRONG, "Unknown reduction type"); 2330857cbf51SRichard Tran Mills if (type == NORM_INFINITY) { 23311c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(work, reductions, N, MPIU_REAL, MPIU_MAX, PetscObjectComm((PetscObject)A))); 233247f7623dSRémi Lacroix } else { 23331c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(work, reductions, N, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)A))); 233447f7623dSRémi Lacroix } 23359566063dSJacob Faibussowitsch PetscCall(PetscFree(work)); 2336857cbf51SRichard Tran Mills if (type == NORM_2) { 2337a873a8cdSSam Reynolds for (i = 0; i < N; i++) reductions[i] = PetscSqrtReal(reductions[i]); 2338857cbf51SRichard Tran Mills } else if (type == REDUCTION_MEAN_REALPART || type == REDUCTION_MEAN_IMAGINARYPART) { 2339a873a8cdSSam Reynolds for (i = 0; i < N; i++) reductions[i] /= m; 234047f7623dSRémi Lacroix } 23413ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 234247f7623dSRémi Lacroix } 234347f7623dSRémi Lacroix 234466976f2fSJacob Faibussowitsch static PetscErrorCode MatInvertBlockDiagonal_MPIBAIJ(Mat A, const PetscScalar **values) 2345d71ae5a4SJacob Faibussowitsch { 2346bbead8a2SBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 2347bbead8a2SBarry Smith 2348bbead8a2SBarry Smith PetscFunctionBegin; 23499566063dSJacob Faibussowitsch PetscCall(MatInvertBlockDiagonal(a->A, values)); 23507b6c816cSBarry Smith A->factorerrortype = a->A->factorerrortype; 23517b6c816cSBarry Smith A->factorerror_zeropivot_value = a->A->factorerror_zeropivot_value; 23527b6c816cSBarry Smith A->factorerror_zeropivot_row = a->A->factorerror_zeropivot_row; 23533ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2354bbead8a2SBarry Smith } 2355bbead8a2SBarry Smith 235666976f2fSJacob Faibussowitsch static PetscErrorCode MatShift_MPIBAIJ(Mat Y, PetscScalar a) 2357d71ae5a4SJacob Faibussowitsch { 23587d68702bSBarry Smith Mat_MPIBAIJ *maij = (Mat_MPIBAIJ *)Y->data; 23596f33a894SBarry Smith Mat_SeqBAIJ *aij = (Mat_SeqBAIJ *)maij->A->data; 23607d68702bSBarry Smith 23617d68702bSBarry Smith PetscFunctionBegin; 23626f33a894SBarry Smith if (!Y->preallocated) { 23639566063dSJacob Faibussowitsch PetscCall(MatMPIBAIJSetPreallocation(Y, Y->rmap->bs, 1, NULL, 0, NULL)); 23646f33a894SBarry Smith } else if (!aij->nz) { 2365b83222d8SBarry Smith PetscInt nonew = aij->nonew; 23669566063dSJacob Faibussowitsch PetscCall(MatSeqBAIJSetPreallocation(maij->A, Y->rmap->bs, 1, NULL)); 2367b83222d8SBarry Smith aij->nonew = nonew; 23687d68702bSBarry Smith } 23699566063dSJacob Faibussowitsch PetscCall(MatShift_Basic(Y, a)); 23703ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 23717d68702bSBarry Smith } 23728c7482ecSBarry Smith 237366976f2fSJacob Faibussowitsch static PetscErrorCode MatMissingDiagonal_MPIBAIJ(Mat A, PetscBool *missing, PetscInt *d) 2374d71ae5a4SJacob Faibussowitsch { 23753b49f96aSBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 23763b49f96aSBarry Smith 23773b49f96aSBarry Smith PetscFunctionBegin; 23785f80ce2aSJacob Faibussowitsch PetscCheck(A->rmap->n == A->cmap->n, PETSC_COMM_SELF, PETSC_ERR_SUP, "Only works for square matrices"); 23799566063dSJacob Faibussowitsch PetscCall(MatMissingDiagonal(a->A, missing, d)); 23803b49f96aSBarry Smith if (d) { 23813b49f96aSBarry Smith PetscInt rstart; 23829566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(A, &rstart, NULL)); 23833b49f96aSBarry Smith *d += rstart / A->rmap->bs; 23843b49f96aSBarry Smith } 23853ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 23863b49f96aSBarry Smith } 23873b49f96aSBarry Smith 238866976f2fSJacob Faibussowitsch static PetscErrorCode MatGetDiagonalBlock_MPIBAIJ(Mat A, Mat *a) 2389d71ae5a4SJacob Faibussowitsch { 2390a5b7ff6bSBarry Smith PetscFunctionBegin; 2391a5b7ff6bSBarry Smith *a = ((Mat_MPIBAIJ *)A->data)->A; 23923ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2393a5b7ff6bSBarry Smith } 2394a5b7ff6bSBarry Smith 239517ea310bSPierre Jolivet static PetscErrorCode MatEliminateZeros_MPIBAIJ(Mat A, PetscBool keep) 239617ea310bSPierre Jolivet { 239717ea310bSPierre Jolivet Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 239817ea310bSPierre Jolivet 239917ea310bSPierre Jolivet PetscFunctionBegin; 240017ea310bSPierre Jolivet PetscCall(MatEliminateZeros_SeqBAIJ(a->A, keep)); // possibly keep zero diagonal coefficients 240117ea310bSPierre Jolivet PetscCall(MatEliminateZeros_SeqBAIJ(a->B, PETSC_FALSE)); // never keep zero diagonal coefficients 240217ea310bSPierre Jolivet PetscFunctionReturn(PETSC_SUCCESS); 240317ea310bSPierre Jolivet } 240417ea310bSPierre Jolivet 24053964eb88SJed Brown static struct _MatOps MatOps_Values = {MatSetValues_MPIBAIJ, 2406cc2dc46cSBarry Smith MatGetRow_MPIBAIJ, 2407cc2dc46cSBarry Smith MatRestoreRow_MPIBAIJ, 2408cc2dc46cSBarry Smith MatMult_MPIBAIJ, 240997304618SKris Buschelman /* 4*/ MatMultAdd_MPIBAIJ, 24107c922b88SBarry Smith MatMultTranspose_MPIBAIJ, 24117c922b88SBarry Smith MatMultTransposeAdd_MPIBAIJ, 2412f4259b30SLisandro Dalcin NULL, 2413f4259b30SLisandro Dalcin NULL, 2414f4259b30SLisandro Dalcin NULL, 2415f4259b30SLisandro Dalcin /*10*/ NULL, 2416f4259b30SLisandro Dalcin NULL, 2417f4259b30SLisandro Dalcin NULL, 2418b1a666ecSBarry Smith MatSOR_MPIBAIJ, 2419cc2dc46cSBarry Smith MatTranspose_MPIBAIJ, 242097304618SKris Buschelman /*15*/ MatGetInfo_MPIBAIJ, 24217fc3c18eSBarry Smith MatEqual_MPIBAIJ, 2422cc2dc46cSBarry Smith MatGetDiagonal_MPIBAIJ, 2423cc2dc46cSBarry Smith MatDiagonalScale_MPIBAIJ, 2424cc2dc46cSBarry Smith MatNorm_MPIBAIJ, 242597304618SKris Buschelman /*20*/ MatAssemblyBegin_MPIBAIJ, 2426cc2dc46cSBarry Smith MatAssemblyEnd_MPIBAIJ, 2427cc2dc46cSBarry Smith MatSetOption_MPIBAIJ, 2428cc2dc46cSBarry Smith MatZeroEntries_MPIBAIJ, 2429d519adbfSMatthew Knepley /*24*/ MatZeroRows_MPIBAIJ, 2430f4259b30SLisandro Dalcin NULL, 2431f4259b30SLisandro Dalcin NULL, 2432f4259b30SLisandro Dalcin NULL, 2433f4259b30SLisandro Dalcin NULL, 243426cec326SBarry Smith /*29*/ MatSetUp_MPI_Hash, 2435f4259b30SLisandro Dalcin NULL, 2436f4259b30SLisandro Dalcin NULL, 2437a5b7ff6bSBarry Smith MatGetDiagonalBlock_MPIBAIJ, 2438f4259b30SLisandro Dalcin NULL, 2439d519adbfSMatthew Knepley /*34*/ MatDuplicate_MPIBAIJ, 2440f4259b30SLisandro Dalcin NULL, 2441f4259b30SLisandro Dalcin NULL, 2442f4259b30SLisandro Dalcin NULL, 2443f4259b30SLisandro Dalcin NULL, 2444d519adbfSMatthew Knepley /*39*/ MatAXPY_MPIBAIJ, 24457dae84e0SHong Zhang MatCreateSubMatrices_MPIBAIJ, 2446cc2dc46cSBarry Smith MatIncreaseOverlap_MPIBAIJ, 2447cc2dc46cSBarry Smith MatGetValues_MPIBAIJ, 24483c896bc6SHong Zhang MatCopy_MPIBAIJ, 2449f4259b30SLisandro Dalcin /*44*/ NULL, 2450cc2dc46cSBarry Smith MatScale_MPIBAIJ, 24517d68702bSBarry Smith MatShift_MPIBAIJ, 2452f4259b30SLisandro Dalcin NULL, 24536f0a72daSMatthew G. Knepley MatZeroRowsColumns_MPIBAIJ, 2454f4259b30SLisandro Dalcin /*49*/ NULL, 2455f4259b30SLisandro Dalcin NULL, 2456f4259b30SLisandro Dalcin NULL, 2457f4259b30SLisandro Dalcin NULL, 2458f4259b30SLisandro Dalcin NULL, 245993dfae19SHong Zhang /*54*/ MatFDColoringCreate_MPIXAIJ, 2460f4259b30SLisandro Dalcin NULL, 2461cc2dc46cSBarry Smith MatSetUnfactored_MPIBAIJ, 246282094794SBarry Smith MatPermute_MPIBAIJ, 2463cc2dc46cSBarry Smith MatSetValuesBlocked_MPIBAIJ, 24647dae84e0SHong Zhang /*59*/ MatCreateSubMatrix_MPIBAIJ, 2465f14a1c24SBarry Smith MatDestroy_MPIBAIJ, 2466f14a1c24SBarry Smith MatView_MPIBAIJ, 2467f4259b30SLisandro Dalcin NULL, 2468f4259b30SLisandro Dalcin NULL, 2469f4259b30SLisandro Dalcin /*64*/ NULL, 2470f4259b30SLisandro Dalcin NULL, 2471f4259b30SLisandro Dalcin NULL, 2472f4259b30SLisandro Dalcin NULL, 2473f4259b30SLisandro Dalcin NULL, 2474d519adbfSMatthew Knepley /*69*/ MatGetRowMaxAbs_MPIBAIJ, 2475f4259b30SLisandro Dalcin NULL, 2476f4259b30SLisandro Dalcin NULL, 2477f4259b30SLisandro Dalcin NULL, 2478f4259b30SLisandro Dalcin NULL, 2479f4259b30SLisandro Dalcin /*74*/ NULL, 2480f6d58c54SBarry Smith MatFDColoringApply_BAIJ, 2481f4259b30SLisandro Dalcin NULL, 2482f4259b30SLisandro Dalcin NULL, 2483f4259b30SLisandro Dalcin NULL, 2484f4259b30SLisandro Dalcin /*79*/ NULL, 2485f4259b30SLisandro Dalcin NULL, 2486f4259b30SLisandro Dalcin NULL, 2487f4259b30SLisandro Dalcin NULL, 24885bba2384SShri Abhyankar MatLoad_MPIBAIJ, 2489f4259b30SLisandro Dalcin /*84*/ NULL, 2490f4259b30SLisandro Dalcin NULL, 2491f4259b30SLisandro Dalcin NULL, 2492f4259b30SLisandro Dalcin NULL, 2493f4259b30SLisandro Dalcin NULL, 2494f4259b30SLisandro Dalcin /*89*/ NULL, 2495f4259b30SLisandro Dalcin NULL, 2496f4259b30SLisandro Dalcin NULL, 2497f4259b30SLisandro Dalcin NULL, 2498f4259b30SLisandro Dalcin NULL, 2499f4259b30SLisandro Dalcin /*94*/ NULL, 2500f4259b30SLisandro Dalcin NULL, 2501f4259b30SLisandro Dalcin NULL, 2502f4259b30SLisandro Dalcin NULL, 2503f4259b30SLisandro Dalcin NULL, 2504f4259b30SLisandro Dalcin /*99*/ NULL, 2505f4259b30SLisandro Dalcin NULL, 2506f4259b30SLisandro Dalcin NULL, 25072726fb6dSPierre Jolivet MatConjugate_MPIBAIJ, 2508f4259b30SLisandro Dalcin NULL, 2509f4259b30SLisandro Dalcin /*104*/ NULL, 251099cafbc1SBarry Smith MatRealPart_MPIBAIJ, 25118c7482ecSBarry Smith MatImaginaryPart_MPIBAIJ, 2512f4259b30SLisandro Dalcin NULL, 2513f4259b30SLisandro Dalcin NULL, 2514f4259b30SLisandro Dalcin /*109*/ NULL, 2515f4259b30SLisandro Dalcin NULL, 2516f4259b30SLisandro Dalcin NULL, 2517f4259b30SLisandro Dalcin NULL, 25183b49f96aSBarry Smith MatMissingDiagonal_MPIBAIJ, 2519d1adec66SJed Brown /*114*/ MatGetSeqNonzeroStructure_MPIBAIJ, 2520f4259b30SLisandro Dalcin NULL, 25214683f7a4SShri Abhyankar MatGetGhosts_MPIBAIJ, 2522f4259b30SLisandro Dalcin NULL, 2523f4259b30SLisandro Dalcin NULL, 2524f4259b30SLisandro Dalcin /*119*/ NULL, 2525f4259b30SLisandro Dalcin NULL, 2526f4259b30SLisandro Dalcin NULL, 2527f4259b30SLisandro Dalcin NULL, 2528e8271787SHong Zhang MatGetMultiProcBlock_MPIBAIJ, 2529f4259b30SLisandro Dalcin /*124*/ NULL, 2530a873a8cdSSam Reynolds MatGetColumnReductions_MPIBAIJ, 25313964eb88SJed Brown MatInvertBlockDiagonal_MPIBAIJ, 2532f4259b30SLisandro Dalcin NULL, 2533f4259b30SLisandro Dalcin NULL, 2534f4259b30SLisandro Dalcin /*129*/ NULL, 2535f4259b30SLisandro Dalcin NULL, 2536f4259b30SLisandro Dalcin NULL, 2537f4259b30SLisandro Dalcin NULL, 2538f4259b30SLisandro Dalcin NULL, 2539f4259b30SLisandro Dalcin /*134*/ NULL, 2540f4259b30SLisandro Dalcin NULL, 2541f4259b30SLisandro Dalcin NULL, 2542f4259b30SLisandro Dalcin NULL, 2543f4259b30SLisandro Dalcin NULL, 254446533700Sstefano_zampini /*139*/ MatSetBlockSizes_Default, 2545f4259b30SLisandro Dalcin NULL, 2546f4259b30SLisandro Dalcin NULL, 2547bdf6f3fcSHong Zhang MatFDColoringSetUp_MPIXAIJ, 2548f4259b30SLisandro Dalcin NULL, 2549d70f29a3SPierre Jolivet /*144*/ MatCreateMPIMatConcatenateSeqMat_MPIBAIJ, 2550d70f29a3SPierre Jolivet NULL, 2551d70f29a3SPierre Jolivet NULL, 255299a7f59eSMark Adams NULL, 255399a7f59eSMark Adams NULL, 25547fb60732SBarry Smith NULL, 2555dec0b466SHong Zhang /*150*/ NULL, 2556eede4a3fSMark Adams MatEliminateZeros_MPIBAIJ, 2557eede4a3fSMark Adams NULL}; 255879bdfe76SSatish Balay 2559cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIBAIJ_MPISBAIJ(Mat, MatType, MatReuse, Mat *); 2560c9225affSStefano Zampini PETSC_INTERN PetscErrorCode MatConvert_XAIJ_IS(Mat, MatType, MatReuse, Mat *); 2561d94109b8SHong Zhang 256266976f2fSJacob Faibussowitsch static PetscErrorCode MatMPIBAIJSetPreallocationCSR_MPIBAIJ(Mat B, PetscInt bs, const PetscInt ii[], const PetscInt jj[], const PetscScalar V[]) 2563d71ae5a4SJacob Faibussowitsch { 2564b8d659d7SLisandro Dalcin PetscInt m, rstart, cstart, cend; 2565f4259b30SLisandro Dalcin PetscInt i, j, dlen, olen, nz, nz_max = 0, *d_nnz = NULL, *o_nnz = NULL; 2566f4259b30SLisandro Dalcin const PetscInt *JJ = NULL; 2567f4259b30SLisandro Dalcin PetscScalar *values = NULL; 2568d47bf9aaSJed Brown PetscBool roworiented = ((Mat_MPIBAIJ *)B->data)->roworiented; 25693bd0feecSPierre Jolivet PetscBool nooffprocentries; 2570aac34f13SBarry Smith 2571aac34f13SBarry Smith PetscFunctionBegin; 25729566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetBlockSize(B->rmap, bs)); 25739566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetBlockSize(B->cmap, bs)); 25749566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->rmap)); 25759566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->cmap)); 25769566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetBlockSize(B->rmap, &bs)); 2577d0f46423SBarry Smith m = B->rmap->n / bs; 2578d0f46423SBarry Smith rstart = B->rmap->rstart / bs; 2579d0f46423SBarry Smith cstart = B->cmap->rstart / bs; 2580d0f46423SBarry Smith cend = B->cmap->rend / bs; 2581b8d659d7SLisandro Dalcin 25825f80ce2aSJacob Faibussowitsch PetscCheck(!ii[0], PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "ii[0] must be 0 but it is %" PetscInt_FMT, ii[0]); 25839566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(m, &d_nnz, m, &o_nnz)); 2584aac34f13SBarry Smith for (i = 0; i < m; i++) { 2585cf12db73SBarry Smith nz = ii[i + 1] - ii[i]; 25865f80ce2aSJacob Faibussowitsch PetscCheck(nz >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Local row %" PetscInt_FMT " has a negative number of columns %" PetscInt_FMT, i, nz); 2587b8d659d7SLisandro Dalcin nz_max = PetscMax(nz_max, nz); 258837cd3c0dSBarry Smith dlen = 0; 258937cd3c0dSBarry Smith olen = 0; 2590cf12db73SBarry Smith JJ = jj + ii[i]; 2591b8d659d7SLisandro Dalcin for (j = 0; j < nz; j++) { 259237cd3c0dSBarry Smith if (*JJ < cstart || *JJ >= cend) olen++; 259337cd3c0dSBarry Smith else dlen++; 2594aac34f13SBarry Smith JJ++; 2595aac34f13SBarry Smith } 259637cd3c0dSBarry Smith d_nnz[i] = dlen; 259737cd3c0dSBarry Smith o_nnz[i] = olen; 2598aac34f13SBarry Smith } 25999566063dSJacob Faibussowitsch PetscCall(MatMPIBAIJSetPreallocation(B, bs, 0, d_nnz, 0, o_nnz)); 26009566063dSJacob Faibussowitsch PetscCall(PetscFree2(d_nnz, o_nnz)); 2601aac34f13SBarry Smith 2602b8d659d7SLisandro Dalcin values = (PetscScalar *)V; 260348a46eb9SPierre Jolivet if (!values) PetscCall(PetscCalloc1(bs * bs * nz_max, &values)); 2604b8d659d7SLisandro Dalcin for (i = 0; i < m; i++) { 2605b8d659d7SLisandro Dalcin PetscInt row = i + rstart; 2606cf12db73SBarry Smith PetscInt ncols = ii[i + 1] - ii[i]; 2607cf12db73SBarry Smith const PetscInt *icols = jj + ii[i]; 2608bb80cfbbSStefano Zampini if (bs == 1 || !roworiented) { /* block ordering matches the non-nested layout of MatSetValues so we can insert entire rows */ 2609cf12db73SBarry Smith const PetscScalar *svals = values + (V ? (bs * bs * ii[i]) : 0); 26109566063dSJacob Faibussowitsch PetscCall(MatSetValuesBlocked_MPIBAIJ(B, 1, &row, ncols, icols, svals, INSERT_VALUES)); 26113adadaf3SJed Brown } else { /* block ordering does not match so we can only insert one block at a time. */ 26123adadaf3SJed Brown PetscInt j; 26133adadaf3SJed Brown for (j = 0; j < ncols; j++) { 26143adadaf3SJed Brown const PetscScalar *svals = values + (V ? (bs * bs * (ii[i] + j)) : 0); 26159566063dSJacob Faibussowitsch PetscCall(MatSetValuesBlocked_MPIBAIJ(B, 1, &row, 1, &icols[j], svals, INSERT_VALUES)); 26163adadaf3SJed Brown } 26173adadaf3SJed Brown } 2618aac34f13SBarry Smith } 2619aac34f13SBarry Smith 26209566063dSJacob Faibussowitsch if (!V) PetscCall(PetscFree(values)); 26213bd0feecSPierre Jolivet nooffprocentries = B->nooffprocentries; 26223bd0feecSPierre Jolivet B->nooffprocentries = PETSC_TRUE; 26239566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY)); 26249566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY)); 26253bd0feecSPierre Jolivet B->nooffprocentries = nooffprocentries; 26263bd0feecSPierre Jolivet 26279566063dSJacob Faibussowitsch PetscCall(MatSetOption(B, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE)); 26283ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2629aac34f13SBarry Smith } 2630aac34f13SBarry Smith 2631aac34f13SBarry Smith /*@C 263211a5261eSBarry Smith MatMPIBAIJSetPreallocationCSR - Creates a sparse parallel matrix in `MATBAIJ` format using the given nonzero structure and (optional) numerical values 2633aac34f13SBarry Smith 2634d083f849SBarry Smith Collective 2635aac34f13SBarry Smith 2636aac34f13SBarry Smith Input Parameters: 26371c4f3114SJed Brown + B - the matrix 2638dfb205c3SBarry Smith . bs - the block size 263920f4b53cSBarry Smith . i - the indices into `j` for the start of each local row (starts with zero) 2640aac34f13SBarry Smith . j - the column indices for each local row (starts with zero) these must be sorted for each row 2641d8a51d2aSBarry Smith - v - optional values in the matrix, use `NULL` if not provided 2642aac34f13SBarry Smith 2643664954b6SBarry Smith Level: advanced 2644aac34f13SBarry Smith 264595452b02SPatrick Sanan Notes: 2646d8a51d2aSBarry Smith The `i`, `j`, and `v` arrays ARE copied by this routine into the internal format used by PETSc; 2647d8a51d2aSBarry Smith thus you CANNOT change the matrix entries by changing the values of `v` after you have 2648d8a51d2aSBarry Smith called this routine. 2649d8a51d2aSBarry Smith 265011a5261eSBarry Smith The order of the entries in values is specified by the `MatOption` `MAT_ROW_ORIENTED`. For example, C programs 265111a5261eSBarry Smith may want to use the default `MAT_ROW_ORIENTED` with value `PETSC_TRUE` and use an array v[nnz][bs][bs] where the second index is 26523adadaf3SJed Brown over rows within a block and the last index is over columns within a block row. Fortran programs will likely set 265311a5261eSBarry Smith `MAT_ROW_ORIENTED` with value `PETSC_FALSE` and use a Fortran array v(bs,bs,nnz) in which the first index is over rows within a 26543adadaf3SJed Brown block column and the second index is over columns within a block. 26553adadaf3SJed Brown 2656664954b6SBarry Smith Though this routine has Preallocation() in the name it also sets the exact nonzero locations of the matrix entries and usually the numerical values as well 2657664954b6SBarry Smith 26587d2c085eSPierre Jolivet .seealso: `Mat`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIBAIJSetPreallocation()`, `MatCreateAIJ()`, `MATMPIAIJ`, `MatCreateMPIBAIJWithArrays()`, `MATMPIBAIJ` 2659aac34f13SBarry Smith @*/ 2660d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIBAIJSetPreallocationCSR(Mat B, PetscInt bs, const PetscInt i[], const PetscInt j[], const PetscScalar v[]) 2661d71ae5a4SJacob Faibussowitsch { 2662aac34f13SBarry Smith PetscFunctionBegin; 26636ba663aaSJed Brown PetscValidHeaderSpecific(B, MAT_CLASSID, 1); 26646ba663aaSJed Brown PetscValidType(B, 1); 26656ba663aaSJed Brown PetscValidLogicalCollectiveInt(B, bs, 2); 2666cac4c232SBarry Smith PetscTryMethod(B, "MatMPIBAIJSetPreallocationCSR_C", (Mat, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[]), (B, bs, i, j, v)); 26673ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2668aac34f13SBarry Smith } 2669aac34f13SBarry Smith 2670d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIBAIJSetPreallocation_MPIBAIJ(Mat B, PetscInt bs, PetscInt d_nz, const PetscInt *d_nnz, PetscInt o_nz, const PetscInt *o_nnz) 2671d71ae5a4SJacob Faibussowitsch { 2672ad79cf63SBarry Smith Mat_MPIBAIJ *b = (Mat_MPIBAIJ *)B->data; 2673535b19f3SBarry Smith PetscInt i; 26745d2a9ed1SStefano Zampini PetscMPIInt size; 2675a23d5eceSKris Buschelman 2676a23d5eceSKris Buschelman PetscFunctionBegin; 2677ad79cf63SBarry Smith if (B->hash_active) { 2678aea10558SJacob Faibussowitsch B->ops[0] = b->cops; 2679ad79cf63SBarry Smith B->hash_active = PETSC_FALSE; 2680ad79cf63SBarry Smith } 2681ad79cf63SBarry Smith if (!B->preallocated) PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)B), bs, &B->bstash)); 26829566063dSJacob Faibussowitsch PetscCall(MatSetBlockSize(B, PetscAbs(bs))); 26839566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->rmap)); 26849566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->cmap)); 26859566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetBlockSize(B->rmap, &bs)); 2686899cda47SBarry Smith 2687a23d5eceSKris Buschelman if (d_nnz) { 2688ad540459SPierre Jolivet for (i = 0; i < B->rmap->n / bs; i++) PetscCheck(d_nnz[i] >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "d_nnz cannot be less than -1: local row %" PetscInt_FMT " value %" PetscInt_FMT, i, d_nnz[i]); 2689a23d5eceSKris Buschelman } 2690a23d5eceSKris Buschelman if (o_nnz) { 2691ad540459SPierre Jolivet for (i = 0; i < B->rmap->n / bs; i++) PetscCheck(o_nnz[i] >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "o_nnz cannot be less than -1: local row %" PetscInt_FMT " value %" PetscInt_FMT, i, o_nnz[i]); 2692a23d5eceSKris Buschelman } 2693a23d5eceSKris Buschelman 2694a23d5eceSKris Buschelman b->bs2 = bs * bs; 2695d0f46423SBarry Smith b->mbs = B->rmap->n / bs; 2696d0f46423SBarry Smith b->nbs = B->cmap->n / bs; 2697d0f46423SBarry Smith b->Mbs = B->rmap->N / bs; 2698d0f46423SBarry Smith b->Nbs = B->cmap->N / bs; 2699a23d5eceSKris Buschelman 2700ad540459SPierre Jolivet for (i = 0; i <= b->size; i++) b->rangebs[i] = B->rmap->range[i] / bs; 2701d0f46423SBarry Smith b->rstartbs = B->rmap->rstart / bs; 2702d0f46423SBarry Smith b->rendbs = B->rmap->rend / bs; 2703d0f46423SBarry Smith b->cstartbs = B->cmap->rstart / bs; 2704d0f46423SBarry Smith b->cendbs = B->cmap->rend / bs; 2705a23d5eceSKris Buschelman 2706cb7b82ddSBarry Smith #if defined(PETSC_USE_CTABLE) 2707eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIDestroy(&b->colmap)); 2708cb7b82ddSBarry Smith #else 27099566063dSJacob Faibussowitsch PetscCall(PetscFree(b->colmap)); 2710cb7b82ddSBarry Smith #endif 27119566063dSJacob Faibussowitsch PetscCall(PetscFree(b->garray)); 27129566063dSJacob Faibussowitsch PetscCall(VecDestroy(&b->lvec)); 27139566063dSJacob Faibussowitsch PetscCall(VecScatterDestroy(&b->Mvctx)); 2714cb7b82ddSBarry Smith 27159566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)B), &size)); 2716c508b908SBarry Smith 2717c508b908SBarry Smith MatSeqXAIJGetOptions_Private(b->B); 27189566063dSJacob Faibussowitsch PetscCall(MatDestroy(&b->B)); 27199566063dSJacob Faibussowitsch PetscCall(MatCreate(PETSC_COMM_SELF, &b->B)); 27209566063dSJacob Faibussowitsch PetscCall(MatSetSizes(b->B, B->rmap->n, size > 1 ? B->cmap->N : 0, B->rmap->n, size > 1 ? B->cmap->N : 0)); 27219566063dSJacob Faibussowitsch PetscCall(MatSetType(b->B, MATSEQBAIJ)); 2722c508b908SBarry Smith MatSeqXAIJRestoreOptions_Private(b->B); 2723cb7b82ddSBarry Smith 2724c508b908SBarry Smith MatSeqXAIJGetOptions_Private(b->A); 2725ad79cf63SBarry Smith PetscCall(MatDestroy(&b->A)); 27269566063dSJacob Faibussowitsch PetscCall(MatCreate(PETSC_COMM_SELF, &b->A)); 27279566063dSJacob Faibussowitsch PetscCall(MatSetSizes(b->A, B->rmap->n, B->cmap->n, B->rmap->n, B->cmap->n)); 27289566063dSJacob Faibussowitsch PetscCall(MatSetType(b->A, MATSEQBAIJ)); 2729c508b908SBarry Smith MatSeqXAIJRestoreOptions_Private(b->A); 2730a23d5eceSKris Buschelman 27319566063dSJacob Faibussowitsch PetscCall(MatSeqBAIJSetPreallocation(b->A, bs, d_nz, d_nnz)); 27329566063dSJacob Faibussowitsch PetscCall(MatSeqBAIJSetPreallocation(b->B, bs, o_nz, o_nnz)); 2733526dfc15SBarry Smith B->preallocated = PETSC_TRUE; 2734cb7b82ddSBarry Smith B->was_assembled = PETSC_FALSE; 2735cb7b82ddSBarry Smith B->assembled = PETSC_FALSE; 27363ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2737a23d5eceSKris Buschelman } 2738a23d5eceSKris Buschelman 27397087cfbeSBarry Smith extern PetscErrorCode MatDiagonalScaleLocal_MPIBAIJ(Mat, Vec); 27407087cfbeSBarry Smith extern PetscErrorCode MatSetHashTableFactor_MPIBAIJ(Mat, PetscReal); 27415bf65638SKris Buschelman 2742d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode MatConvert_MPIBAIJ_MPIAdj(Mat B, MatType newtype, MatReuse reuse, Mat *adj) 2743d71ae5a4SJacob Faibussowitsch { 274482094794SBarry Smith Mat_MPIBAIJ *b = (Mat_MPIBAIJ *)B->data; 274582094794SBarry Smith Mat_SeqBAIJ *d = (Mat_SeqBAIJ *)b->A->data, *o = (Mat_SeqBAIJ *)b->B->data; 274682094794SBarry Smith PetscInt M = B->rmap->n / B->rmap->bs, i, *ii, *jj, cnt, j, k, rstart = B->rmap->rstart / B->rmap->bs; 274782094794SBarry Smith const PetscInt *id = d->i, *jd = d->j, *io = o->i, *jo = o->j, *garray = b->garray; 274882094794SBarry Smith 274982094794SBarry Smith PetscFunctionBegin; 27509566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(M + 1, &ii)); 275182094794SBarry Smith ii[0] = 0; 275282094794SBarry Smith for (i = 0; i < M; i++) { 275308401ef6SPierre Jolivet PetscCheck((id[i + 1] - id[i]) >= 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Indices wrong %" PetscInt_FMT " %" PetscInt_FMT " %" PetscInt_FMT, i, id[i], id[i + 1]); 275408401ef6SPierre Jolivet PetscCheck((io[i + 1] - io[i]) >= 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Indices wrong %" PetscInt_FMT " %" PetscInt_FMT " %" PetscInt_FMT, i, io[i], io[i + 1]); 275582094794SBarry Smith ii[i + 1] = ii[i] + id[i + 1] - id[i] + io[i + 1] - io[i]; 27565ee9ba1cSJed Brown /* remove one from count of matrix has diagonal */ 27575ee9ba1cSJed Brown for (j = id[i]; j < id[i + 1]; j++) { 27589371c9d4SSatish Balay if (jd[j] == i) { 27599371c9d4SSatish Balay ii[i + 1]--; 27609371c9d4SSatish Balay break; 27619371c9d4SSatish Balay } 27625ee9ba1cSJed Brown } 276382094794SBarry Smith } 27649566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(ii[M], &jj)); 276582094794SBarry Smith cnt = 0; 276682094794SBarry Smith for (i = 0; i < M; i++) { 276782094794SBarry Smith for (j = io[i]; j < io[i + 1]; j++) { 276882094794SBarry Smith if (garray[jo[j]] > rstart) break; 276982094794SBarry Smith jj[cnt++] = garray[jo[j]]; 277082094794SBarry Smith } 277182094794SBarry Smith for (k = id[i]; k < id[i + 1]; k++) { 2772ad540459SPierre Jolivet if (jd[k] != i) jj[cnt++] = rstart + jd[k]; 277382094794SBarry Smith } 2774ad540459SPierre Jolivet for (; j < io[i + 1]; j++) jj[cnt++] = garray[jo[j]]; 277582094794SBarry Smith } 27769566063dSJacob Faibussowitsch PetscCall(MatCreateMPIAdj(PetscObjectComm((PetscObject)B), M, B->cmap->N / B->rmap->bs, ii, jj, NULL, adj)); 27773ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 277882094794SBarry Smith } 277982094794SBarry Smith 2780c6db04a5SJed Brown #include <../src/mat/impls/aij/mpi/mpiaij.h> 278162471d69SBarry Smith 2782cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_SeqBAIJ_SeqAIJ(Mat, MatType, MatReuse, Mat *); 2783b2573a8aSBarry Smith 2784d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode MatConvert_MPIBAIJ_MPIAIJ(Mat A, MatType newtype, MatReuse reuse, Mat *newmat) 2785d71ae5a4SJacob Faibussowitsch { 278662471d69SBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 278785a69837SSatish Balay Mat_MPIAIJ *b; 27885f80ce2aSJacob Faibussowitsch Mat B; 278962471d69SBarry Smith 279062471d69SBarry Smith PetscFunctionBegin; 27915f80ce2aSJacob Faibussowitsch PetscCheck(A->assembled, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Matrix must be assembled"); 279262471d69SBarry Smith 27930f6d62edSLisandro Dalcin if (reuse == MAT_REUSE_MATRIX) { 27940f6d62edSLisandro Dalcin B = *newmat; 27950f6d62edSLisandro Dalcin } else { 27969566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)A), &B)); 27979566063dSJacob Faibussowitsch PetscCall(MatSetType(B, MATMPIAIJ)); 27989566063dSJacob Faibussowitsch PetscCall(MatSetSizes(B, A->rmap->n, A->cmap->n, A->rmap->N, A->cmap->N)); 27999566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizes(B, A->rmap->bs, A->cmap->bs)); 28009566063dSJacob Faibussowitsch PetscCall(MatSeqAIJSetPreallocation(B, 0, NULL)); 28019566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(B, 0, NULL, 0, NULL)); 28020f6d62edSLisandro Dalcin } 280362471d69SBarry Smith b = (Mat_MPIAIJ *)B->data; 280462471d69SBarry Smith 28050f6d62edSLisandro Dalcin if (reuse == MAT_REUSE_MATRIX) { 28069566063dSJacob Faibussowitsch PetscCall(MatConvert_SeqBAIJ_SeqAIJ(a->A, MATSEQAIJ, MAT_REUSE_MATRIX, &b->A)); 28079566063dSJacob Faibussowitsch PetscCall(MatConvert_SeqBAIJ_SeqAIJ(a->B, MATSEQAIJ, MAT_REUSE_MATRIX, &b->B)); 28080f6d62edSLisandro Dalcin } else { 28097c612885SStefano Zampini PetscInt *garray = a->garray; 28107c612885SStefano Zampini Mat_SeqAIJ *bB; 28117c612885SStefano Zampini PetscInt bs, nnz; 28129566063dSJacob Faibussowitsch PetscCall(MatDestroy(&b->A)); 28139566063dSJacob Faibussowitsch PetscCall(MatDestroy(&b->B)); 28147c612885SStefano Zampini /* just clear out the data structure */ 28157c612885SStefano Zampini PetscCall(MatDisAssemble_MPIAIJ(B)); 28169566063dSJacob Faibussowitsch PetscCall(MatConvert_SeqBAIJ_SeqAIJ(a->A, MATSEQAIJ, MAT_INITIAL_MATRIX, &b->A)); 28179566063dSJacob Faibussowitsch PetscCall(MatConvert_SeqBAIJ_SeqAIJ(a->B, MATSEQAIJ, MAT_INITIAL_MATRIX, &b->B)); 28187c612885SStefano Zampini 28197c612885SStefano Zampini /* Global numbering for b->B columns */ 28207c612885SStefano Zampini bB = (Mat_SeqAIJ *)b->B->data; 28217c612885SStefano Zampini bs = A->rmap->bs; 28227c612885SStefano Zampini nnz = bB->i[A->rmap->n]; 28237c612885SStefano Zampini for (PetscInt k = 0; k < nnz; k++) { 28247c612885SStefano Zampini PetscInt bj = bB->j[k] / bs; 28257c612885SStefano Zampini PetscInt br = bB->j[k] % bs; 28267c612885SStefano Zampini bB->j[k] = garray[bj] * bs + br; 28277c612885SStefano Zampini } 28280f6d62edSLisandro Dalcin } 28299566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY)); 28309566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY)); 28310f6d62edSLisandro Dalcin 2832511c6705SHong Zhang if (reuse == MAT_INPLACE_MATRIX) { 28339566063dSJacob Faibussowitsch PetscCall(MatHeaderReplace(A, &B)); 283462471d69SBarry Smith } else { 283562471d69SBarry Smith *newmat = B; 283662471d69SBarry Smith } 28373ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 283862471d69SBarry Smith } 283962471d69SBarry Smith 28400bad9183SKris Buschelman /*MC 2841fafad747SKris Buschelman MATMPIBAIJ - MATMPIBAIJ = "mpibaij" - A matrix type to be used for distributed block sparse matrices. 28420bad9183SKris Buschelman 28430bad9183SKris Buschelman Options Database Keys: 284411a5261eSBarry Smith + -mat_type mpibaij - sets the matrix type to `MATMPIBAIJ` during a call to `MatSetFromOptions()` 28458c07d4e3SBarry Smith . -mat_block_size <bs> - set the blocksize used to store the matrix 28466679dcc1SBarry Smith . -mat_baij_mult_version version - indicate the version of the matrix-vector product to use (0 often indicates using BLAS) 284767b8a455SSatish Balay - -mat_use_hash_table <fact> - set hash table factor 28480bad9183SKris Buschelman 28490bad9183SKris Buschelman Level: beginner 28500cd7f59aSBarry Smith 285111a5261eSBarry Smith Note: 28525e0ad47dSPierre Jolivet `MatSetOption(A, MAT_STRUCTURE_ONLY, PETSC_TRUE)` may be called for this matrix type. In this no 285311a5261eSBarry Smith space is allocated for the nonzero entries and any entries passed with `MatSetValues()` are ignored 28540bad9183SKris Buschelman 28555e0ad47dSPierre Jolivet .seealso: `Mat`, `MATBAIJ`, `MATSEQBAIJ`, `MatCreateBAIJ` 28560bad9183SKris Buschelman M*/ 28570bad9183SKris Buschelman 2858cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIBAIJ_MPIBSTRM(Mat, MatType, MatReuse, Mat *); 2859c0cdd4a1SDahai Guo 2860d71ae5a4SJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatCreate_MPIBAIJ(Mat B) 2861d71ae5a4SJacob Faibussowitsch { 2862273d9f13SBarry Smith Mat_MPIBAIJ *b; 286394ae4db5SBarry Smith PetscBool flg = PETSC_FALSE; 2864273d9f13SBarry Smith 2865273d9f13SBarry Smith PetscFunctionBegin; 28664dfa11a4SJacob Faibussowitsch PetscCall(PetscNew(&b)); 286782502324SSatish Balay B->data = (void *)b; 2868aea10558SJacob Faibussowitsch B->ops[0] = MatOps_Values; 2869273d9f13SBarry Smith B->assembled = PETSC_FALSE; 2870273d9f13SBarry Smith 2871273d9f13SBarry Smith B->insertmode = NOT_SET_VALUES; 28729566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)B), &b->rank)); 28739566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)B), &b->size)); 2874273d9f13SBarry Smith 2875273d9f13SBarry Smith /* build local table of row and column ownerships */ 28769566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(b->size + 1, &b->rangebs)); 2877273d9f13SBarry Smith 2878273d9f13SBarry Smith /* build cache for off array entries formed */ 28799566063dSJacob Faibussowitsch PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)B), 1, &B->stash)); 288026fbe8dcSKarl Rupp 2881273d9f13SBarry Smith b->donotstash = PETSC_FALSE; 28820298fd71SBarry Smith b->colmap = NULL; 28830298fd71SBarry Smith b->garray = NULL; 2884273d9f13SBarry Smith b->roworiented = PETSC_TRUE; 2885273d9f13SBarry Smith 2886273d9f13SBarry Smith /* stuff used in block assembly */ 2887f4259b30SLisandro Dalcin b->barray = NULL; 2888273d9f13SBarry Smith 2889273d9f13SBarry Smith /* stuff used for matrix vector multiply */ 2890f4259b30SLisandro Dalcin b->lvec = NULL; 2891f4259b30SLisandro Dalcin b->Mvctx = NULL; 2892273d9f13SBarry Smith 2893273d9f13SBarry Smith /* stuff for MatGetRow() */ 2894f4259b30SLisandro Dalcin b->rowindices = NULL; 2895f4259b30SLisandro Dalcin b->rowvalues = NULL; 2896273d9f13SBarry Smith b->getrowactive = PETSC_FALSE; 2897273d9f13SBarry Smith 2898273d9f13SBarry Smith /* hash table stuff */ 2899f4259b30SLisandro Dalcin b->ht = NULL; 2900f4259b30SLisandro Dalcin b->hd = NULL; 2901273d9f13SBarry Smith b->ht_size = 0; 2902273d9f13SBarry Smith b->ht_flag = PETSC_FALSE; 2903273d9f13SBarry Smith b->ht_fact = 0; 2904273d9f13SBarry Smith b->ht_total_ct = 0; 2905273d9f13SBarry Smith b->ht_insert_ct = 0; 2906273d9f13SBarry Smith 29077dae84e0SHong Zhang /* stuff for MatCreateSubMatrices_MPIBAIJ_local() */ 29087a868f3eSHong Zhang b->ijonly = PETSC_FALSE; 29097a868f3eSHong Zhang 29109566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpibaij_mpiadj_C", MatConvert_MPIBAIJ_MPIAdj)); 29119566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpibaij_mpiaij_C", MatConvert_MPIBAIJ_MPIAIJ)); 29129566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpibaij_mpisbaij_C", MatConvert_MPIBAIJ_MPISBAIJ)); 29137ea3e4caSstefano_zampini #if defined(PETSC_HAVE_HYPRE) 29149566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpibaij_hypre_C", MatConvert_AIJ_HYPRE)); 29157ea3e4caSstefano_zampini #endif 29169566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatStoreValues_C", MatStoreValues_MPIBAIJ)); 29179566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatRetrieveValues_C", MatRetrieveValues_MPIBAIJ)); 29189566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMPIBAIJSetPreallocation_C", MatMPIBAIJSetPreallocation_MPIBAIJ)); 29199566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMPIBAIJSetPreallocationCSR_C", MatMPIBAIJSetPreallocationCSR_MPIBAIJ)); 29209566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatDiagonalScaleLocal_C", MatDiagonalScaleLocal_MPIBAIJ)); 29219566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatSetHashTableFactor_C", MatSetHashTableFactor_MPIBAIJ)); 29229566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpibaij_is_C", MatConvert_XAIJ_IS)); 29239566063dSJacob Faibussowitsch PetscCall(PetscObjectChangeTypeName((PetscObject)B, MATMPIBAIJ)); 292494ae4db5SBarry Smith 2925d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)B), NULL, "Options for loading MPIBAIJ matrix 1", "Mat"); 29269566063dSJacob Faibussowitsch PetscCall(PetscOptionsName("-mat_use_hash_table", "Use hash table to save time in constructing matrix", "MatSetOption", &flg)); 292794ae4db5SBarry Smith if (flg) { 292894ae4db5SBarry Smith PetscReal fact = 1.39; 29299566063dSJacob Faibussowitsch PetscCall(MatSetOption(B, MAT_USE_HASH_TABLE, PETSC_TRUE)); 29309566063dSJacob Faibussowitsch PetscCall(PetscOptionsReal("-mat_use_hash_table", "Use hash table factor", "MatMPIBAIJSetHashTableFactor", fact, &fact, NULL)); 293194ae4db5SBarry Smith if (fact <= 1.0) fact = 1.39; 29329566063dSJacob Faibussowitsch PetscCall(MatMPIBAIJSetHashTableFactor(B, fact)); 29339566063dSJacob Faibussowitsch PetscCall(PetscInfo(B, "Hash table Factor used %5.2g\n", (double)fact)); 293494ae4db5SBarry Smith } 2935d0609cedSBarry Smith PetscOptionsEnd(); 29363ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2937273d9f13SBarry Smith } 2938273d9f13SBarry Smith 29392920cce0SJacob Faibussowitsch // PetscClangLinter pragma disable: -fdoc-section-header-unknown 2940209238afSKris Buschelman /*MC 2941002d173eSKris Buschelman MATBAIJ - MATBAIJ = "baij" - A matrix type to be used for block sparse matrices. 2942209238afSKris Buschelman 294311a5261eSBarry Smith This matrix type is identical to `MATSEQBAIJ` when constructed with a single process communicator, 294411a5261eSBarry Smith and `MATMPIBAIJ` otherwise. 2945209238afSKris Buschelman 2946209238afSKris Buschelman Options Database Keys: 294711a5261eSBarry Smith . -mat_type baij - sets the matrix type to `MATBAIJ` during a call to `MatSetFromOptions()` 2948209238afSKris Buschelman 2949209238afSKris Buschelman Level: beginner 2950209238afSKris Buschelman 295167be906fSBarry Smith .seealso: `Mat`, `MatCreateBAIJ()`, `MATSEQBAIJ`, `MATMPIBAIJ`, `MatMPIBAIJSetPreallocation()`, `MatMPIBAIJSetPreallocationCSR()` 2952209238afSKris Buschelman M*/ 2953209238afSKris Buschelman 2954273d9f13SBarry Smith /*@C 295511a5261eSBarry Smith MatMPIBAIJSetPreallocation - Allocates memory for a sparse parallel matrix in `MATMPIBAIJ` format 295667be906fSBarry Smith (block compressed row). 2957273d9f13SBarry Smith 2958c3339decSBarry Smith Collective 2959273d9f13SBarry Smith 2960273d9f13SBarry Smith Input Parameters: 29611c4f3114SJed Brown + B - the matrix 296211a5261eSBarry Smith . bs - size of block, the blocks are ALWAYS square. One can use `MatSetBlockSizes()` to set a different row and column blocksize but the row 296367be906fSBarry Smith blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with `MatCreateVecs()` 2964273d9f13SBarry Smith . d_nz - number of block nonzeros per block row in diagonal portion of local 2965273d9f13SBarry Smith submatrix (same for all local rows) 2966273d9f13SBarry Smith . d_nnz - array containing the number of block nonzeros in the various block rows 2967273d9f13SBarry Smith of the in diagonal portion of the local (possibly different for each block 296867be906fSBarry Smith row) or `NULL`. If you plan to factor the matrix you must leave room for the diagonal entry and 296995742e49SBarry Smith set it even if it is zero. 2970273d9f13SBarry Smith . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 2971273d9f13SBarry Smith submatrix (same for all local rows). 2972273d9f13SBarry Smith - o_nnz - array containing the number of nonzeros in the various block rows of the 2973273d9f13SBarry Smith off-diagonal portion of the local submatrix (possibly different for 297467be906fSBarry Smith each block row) or `NULL`. 2975273d9f13SBarry Smith 297649a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 2977273d9f13SBarry Smith 2978273d9f13SBarry Smith Options Database Keys: 29798c07d4e3SBarry Smith + -mat_block_size - size of the blocks to use 298067b8a455SSatish Balay - -mat_use_hash_table <fact> - set hash table factor 2981273d9f13SBarry Smith 298267be906fSBarry Smith Level: intermediate 298367be906fSBarry Smith 2984273d9f13SBarry Smith Notes: 298567be906fSBarry Smith For good matrix assembly performance 298667be906fSBarry Smith the user should preallocate the matrix storage by setting the parameters 298767be906fSBarry Smith `d_nz` (or `d_nnz`) and `o_nz` (or `o_nnz`). By setting these parameters accurately, 298867be906fSBarry Smith performance can be increased by more than a factor of 50. 298967be906fSBarry Smith 299011a5261eSBarry Smith If `PETSC_DECIDE` or `PETSC_DETERMINE` is used for a particular argument on one processor 2991273d9f13SBarry Smith than it must be used on all processors that share the object for that argument. 2992273d9f13SBarry Smith 2993273d9f13SBarry Smith Storage Information: 2994273d9f13SBarry Smith For a square global matrix we define each processor's diagonal portion 2995273d9f13SBarry Smith to be its local rows and the corresponding columns (a square submatrix); 2996273d9f13SBarry Smith each processor's off-diagonal portion encompasses the remainder of the 2997273d9f13SBarry Smith local matrix (a rectangular submatrix). 2998273d9f13SBarry Smith 2999273d9f13SBarry Smith The user can specify preallocated storage for the diagonal part of 300067be906fSBarry Smith the local submatrix with either `d_nz` or `d_nnz` (not both). Set 300167be906fSBarry Smith `d_nz` = `PETSC_DEFAULT` and `d_nnz` = `NULL` for PETSc to control dynamic 3002273d9f13SBarry Smith memory allocation. Likewise, specify preallocated storage for the 300367be906fSBarry Smith off-diagonal part of the local submatrix with `o_nz` or `o_nnz` (not both). 3004273d9f13SBarry Smith 3005273d9f13SBarry Smith Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 3006273d9f13SBarry Smith the figure below we depict these three local rows and all columns (0-11). 3007273d9f13SBarry Smith 3008273d9f13SBarry Smith .vb 3009273d9f13SBarry Smith 0 1 2 3 4 5 6 7 8 9 10 11 3010a4b1a0f6SJed Brown -------------------------- 3011273d9f13SBarry Smith row 3 |o o o d d d o o o o o o 3012273d9f13SBarry Smith row 4 |o o o d d d o o o o o o 3013273d9f13SBarry Smith row 5 |o o o d d d o o o o o o 3014a4b1a0f6SJed Brown -------------------------- 3015273d9f13SBarry Smith .ve 3016273d9f13SBarry Smith 3017273d9f13SBarry Smith Thus, any entries in the d locations are stored in the d (diagonal) 3018273d9f13SBarry Smith submatrix, and any entries in the o locations are stored in the 3019273d9f13SBarry Smith o (off-diagonal) submatrix. Note that the d and the o submatrices are 302011a5261eSBarry Smith stored simply in the `MATSEQBAIJ` format for compressed row storage. 3021273d9f13SBarry Smith 302267be906fSBarry Smith Now `d_nz` should indicate the number of block nonzeros per row in the d matrix, 302367be906fSBarry Smith and `o_nz` should indicate the number of block nonzeros per row in the o matrix. 3024273d9f13SBarry Smith In general, for PDE problems in which most nonzeros are near the diagonal, 302520f4b53cSBarry Smith one expects `d_nz` >> `o_nz`. 3026273d9f13SBarry Smith 302711a5261eSBarry Smith You can call `MatGetInfo()` to get information on how effective the preallocation was; 3028aa95bbe8SBarry Smith for example the fields mallocs,nz_allocated,nz_used,nz_unneeded; 302967be906fSBarry Smith You can also run with the option `-info` and look for messages with the string 3030aa95bbe8SBarry Smith malloc in them to see if additional memory allocation was needed. 3031aa95bbe8SBarry Smith 303267be906fSBarry Smith .seealso: `Mat`, `MATMPIBAIJ`, `MatCreate()`, `MatCreateSeqBAIJ()`, `MatSetValues()`, `MatCreateBAIJ()`, `MatMPIBAIJSetPreallocationCSR()`, `PetscSplitOwnership()` 3033273d9f13SBarry Smith @*/ 3034d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIBAIJSetPreallocation(Mat B, PetscInt bs, PetscInt d_nz, const PetscInt d_nnz[], PetscInt o_nz, const PetscInt o_nnz[]) 3035d71ae5a4SJacob Faibussowitsch { 3036273d9f13SBarry Smith PetscFunctionBegin; 30376ba663aaSJed Brown PetscValidHeaderSpecific(B, MAT_CLASSID, 1); 30386ba663aaSJed Brown PetscValidType(B, 1); 30396ba663aaSJed Brown PetscValidLogicalCollectiveInt(B, bs, 2); 3040cac4c232SBarry Smith PetscTryMethod(B, "MatMPIBAIJSetPreallocation_C", (Mat, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[]), (B, bs, d_nz, d_nnz, o_nz, o_nnz)); 30413ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3042273d9f13SBarry Smith } 3043273d9f13SBarry Smith 30442920cce0SJacob Faibussowitsch // PetscClangLinter pragma disable: -fdoc-section-header-unknown 304579bdfe76SSatish Balay /*@C 304611a5261eSBarry Smith MatCreateBAIJ - Creates a sparse parallel matrix in `MATBAIJ` format 304767be906fSBarry Smith (block compressed row). 304879bdfe76SSatish Balay 3049d083f849SBarry Smith Collective 3050db81eaa0SLois Curfman McInnes 305179bdfe76SSatish Balay Input Parameters: 3052db81eaa0SLois Curfman McInnes + comm - MPI communicator 305311a5261eSBarry Smith . bs - size of block, the blocks are ALWAYS square. One can use `MatSetBlockSizes()` to set a different row and column blocksize but the row 305411a5261eSBarry Smith blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with `MatCreateVecs()` 305511a5261eSBarry Smith . m - number of local rows (or `PETSC_DECIDE` to have calculated if M is given) 305692e8d321SLois Curfman McInnes This value should be the same as the local size used in creating the 305792e8d321SLois Curfman McInnes y vector for the matrix-vector product y = Ax. 305811a5261eSBarry Smith . n - number of local columns (or `PETSC_DECIDE` to have calculated if N is given) 305992e8d321SLois Curfman McInnes This value should be the same as the local size used in creating the 306092e8d321SLois Curfman McInnes x vector for the matrix-vector product y = Ax. 306111a5261eSBarry Smith . M - number of global rows (or `PETSC_DETERMINE` to have calculated if m is given) 306211a5261eSBarry Smith . N - number of global columns (or `PETSC_DETERMINE` to have calculated if n is given) 306347a75d0bSBarry Smith . d_nz - number of nonzero blocks per block row in diagonal portion of local 306479bdfe76SSatish Balay submatrix (same for all local rows) 306547a75d0bSBarry Smith . d_nnz - array containing the number of nonzero blocks in the various block rows 306692e8d321SLois Curfman McInnes of the in diagonal portion of the local (possibly different for each block 30670298fd71SBarry Smith row) or NULL. If you plan to factor the matrix you must leave room for the diagonal entry 306895742e49SBarry Smith and set it even if it is zero. 306947a75d0bSBarry Smith . o_nz - number of nonzero blocks per block row in the off-diagonal portion of local 307079bdfe76SSatish Balay submatrix (same for all local rows). 307147a75d0bSBarry Smith - o_nnz - array containing the number of nonzero blocks in the various block rows of the 307292e8d321SLois Curfman McInnes off-diagonal portion of the local submatrix (possibly different for 30730298fd71SBarry Smith each block row) or NULL. 307479bdfe76SSatish Balay 307579bdfe76SSatish Balay Output Parameter: 307679bdfe76SSatish Balay . A - the matrix 307779bdfe76SSatish Balay 3078db81eaa0SLois Curfman McInnes Options Database Keys: 30798c07d4e3SBarry Smith + -mat_block_size - size of the blocks to use 308067b8a455SSatish Balay - -mat_use_hash_table <fact> - set hash table factor 30813ffaccefSLois Curfman McInnes 308267be906fSBarry Smith Level: intermediate 308367be906fSBarry Smith 308467be906fSBarry Smith Notes: 308577433607SBarry Smith It is recommended that one use `MatCreateFromOptions()` or the `MatCreate()`, `MatSetType()` and/or `MatSetFromOptions()`, 308677433607SBarry Smith MatXXXXSetPreallocation() paradigm instead of this routine directly. 308777433607SBarry Smith [MatXXXXSetPreallocation() is, for example, `MatSeqBAIJSetPreallocation()`] 308877433607SBarry Smith 308967be906fSBarry Smith For good matrix assembly performance 309067be906fSBarry Smith the user should preallocate the matrix storage by setting the parameters 309167be906fSBarry Smith `d_nz` (or `d_nnz`) and `o_nz` (or `o_nnz`). By setting these parameters accurately, 309267be906fSBarry Smith performance can be increased by more than a factor of 50. 309367be906fSBarry Smith 309449a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 309549a6f317SBarry Smith 309647a75d0bSBarry Smith A nonzero block is any block that as 1 or more nonzeros in it 309747a75d0bSBarry Smith 309879bdfe76SSatish Balay The user MUST specify either the local or global matrix dimensions 309979bdfe76SSatish Balay (possibly both). 310079bdfe76SSatish Balay 310111a5261eSBarry Smith If `PETSC_DECIDE` or `PETSC_DETERMINE` is used for a particular argument on one processor 3102be79a94dSBarry Smith than it must be used on all processors that share the object for that argument. 3103be79a94dSBarry Smith 3104727bdf9bSBarry Smith If `m` and `n` are not `PETSC_DECIDE`, then the values determine the `PetscLayout` of the matrix and the ranges returned by 3105727bdf9bSBarry Smith `MatGetOwnershipRange()`, `MatGetOwnershipRanges()`, `MatGetOwnershipRangeColumn()`, and `MatGetOwnershipRangesColumn()`. 3106727bdf9bSBarry Smith 310779bdfe76SSatish Balay Storage Information: 310879bdfe76SSatish Balay For a square global matrix we define each processor's diagonal portion 310979bdfe76SSatish Balay to be its local rows and the corresponding columns (a square submatrix); 311079bdfe76SSatish Balay each processor's off-diagonal portion encompasses the remainder of the 311179bdfe76SSatish Balay local matrix (a rectangular submatrix). 311279bdfe76SSatish Balay 311379bdfe76SSatish Balay The user can specify preallocated storage for the diagonal part of 311479bdfe76SSatish Balay the local submatrix with either d_nz or d_nnz (not both). Set 311567be906fSBarry Smith `d_nz` = `PETSC_DEFAULT` and `d_nnz` = `NULL` for PETSc to control dynamic 311679bdfe76SSatish Balay memory allocation. Likewise, specify preallocated storage for the 311767be906fSBarry Smith off-diagonal part of the local submatrix with `o_nz` or `o_nnz` (not both). 311879bdfe76SSatish Balay 311979bdfe76SSatish Balay Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 312079bdfe76SSatish Balay the figure below we depict these three local rows and all columns (0-11). 312179bdfe76SSatish Balay 3122db81eaa0SLois Curfman McInnes .vb 3123db81eaa0SLois Curfman McInnes 0 1 2 3 4 5 6 7 8 9 10 11 3124a4b1a0f6SJed Brown -------------------------- 3125db81eaa0SLois Curfman McInnes row 3 |o o o d d d o o o o o o 3126db81eaa0SLois Curfman McInnes row 4 |o o o d d d o o o o o o 3127db81eaa0SLois Curfman McInnes row 5 |o o o d d d o o o o o o 3128a4b1a0f6SJed Brown -------------------------- 3129db81eaa0SLois Curfman McInnes .ve 313079bdfe76SSatish Balay 313179bdfe76SSatish Balay Thus, any entries in the d locations are stored in the d (diagonal) 313279bdfe76SSatish Balay submatrix, and any entries in the o locations are stored in the 313379bdfe76SSatish Balay o (off-diagonal) submatrix. Note that the d and the o submatrices are 313411a5261eSBarry Smith stored simply in the `MATSEQBAIJ` format for compressed row storage. 313579bdfe76SSatish Balay 313667be906fSBarry Smith Now `d_nz` should indicate the number of block nonzeros per row in the d matrix, 313767be906fSBarry Smith and `o_nz` should indicate the number of block nonzeros per row in the o matrix. 313879bdfe76SSatish Balay In general, for PDE problems in which most nonzeros are near the diagonal, 313920f4b53cSBarry Smith one expects `d_nz` >> `o_nz`. 314079bdfe76SSatish Balay 3141727bdf9bSBarry Smith .seealso: `Mat`, `MatCreate()`, `MatCreateSeqBAIJ()`, `MatSetValues()`, `MatMPIBAIJSetPreallocation()`, `MatMPIBAIJSetPreallocationCSR()`, 3142727bdf9bSBarry Smith `MatGetOwnershipRange()`, `MatGetOwnershipRanges()`, `MatGetOwnershipRangeColumn()`, `MatGetOwnershipRangesColumn()`, `PetscLayout` 314379bdfe76SSatish Balay @*/ 3144d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateBAIJ(MPI_Comm comm, PetscInt bs, PetscInt m, PetscInt n, PetscInt M, PetscInt N, PetscInt d_nz, const PetscInt d_nnz[], PetscInt o_nz, const PetscInt o_nnz[], Mat *A) 3145d71ae5a4SJacob Faibussowitsch { 3146b24ad042SBarry Smith PetscMPIInt size; 314779bdfe76SSatish Balay 3148d64ed03dSBarry Smith PetscFunctionBegin; 31499566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, A)); 31509566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*A, m, n, M, N)); 31519566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 3152273d9f13SBarry Smith if (size > 1) { 31539566063dSJacob Faibussowitsch PetscCall(MatSetType(*A, MATMPIBAIJ)); 31549566063dSJacob Faibussowitsch PetscCall(MatMPIBAIJSetPreallocation(*A, bs, d_nz, d_nnz, o_nz, o_nnz)); 3155273d9f13SBarry Smith } else { 31569566063dSJacob Faibussowitsch PetscCall(MatSetType(*A, MATSEQBAIJ)); 31579566063dSJacob Faibussowitsch PetscCall(MatSeqBAIJSetPreallocation(*A, bs, d_nz, d_nnz)); 31583914022bSBarry Smith } 31593ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 316079bdfe76SSatish Balay } 3161026e39d0SSatish Balay 3162d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatDuplicate_MPIBAIJ(Mat matin, MatDuplicateOption cpvalues, Mat *newmat) 3163d71ae5a4SJacob Faibussowitsch { 31640ac07820SSatish Balay Mat mat; 31650ac07820SSatish Balay Mat_MPIBAIJ *a, *oldmat = (Mat_MPIBAIJ *)matin->data; 3166b24ad042SBarry Smith PetscInt len = 0; 31670ac07820SSatish Balay 3168d64ed03dSBarry Smith PetscFunctionBegin; 3169f4259b30SLisandro Dalcin *newmat = NULL; 31709566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)matin), &mat)); 31719566063dSJacob Faibussowitsch PetscCall(MatSetSizes(mat, matin->rmap->n, matin->cmap->n, matin->rmap->N, matin->cmap->N)); 31729566063dSJacob Faibussowitsch PetscCall(MatSetType(mat, ((PetscObject)matin)->type_name)); 31737fff6886SHong Zhang 3174420957c1SBarry Smith PetscCall(PetscLayoutReference(matin->rmap, &mat->rmap)); 3175420957c1SBarry Smith PetscCall(PetscLayoutReference(matin->cmap, &mat->cmap)); 3176420957c1SBarry Smith if (matin->hash_active) { 3177420957c1SBarry Smith PetscCall(MatSetUp(mat)); 3178420957c1SBarry Smith } else { 3179d5f3da31SBarry Smith mat->factortype = matin->factortype; 3180273d9f13SBarry Smith mat->preallocated = PETSC_TRUE; 31810ac07820SSatish Balay mat->assembled = PETSC_TRUE; 31827fff6886SHong Zhang mat->insertmode = NOT_SET_VALUES; 31837fff6886SHong Zhang 3184273d9f13SBarry Smith a = (Mat_MPIBAIJ *)mat->data; 3185d0f46423SBarry Smith mat->rmap->bs = matin->rmap->bs; 31860ac07820SSatish Balay a->bs2 = oldmat->bs2; 31870ac07820SSatish Balay a->mbs = oldmat->mbs; 31880ac07820SSatish Balay a->nbs = oldmat->nbs; 31890ac07820SSatish Balay a->Mbs = oldmat->Mbs; 31900ac07820SSatish Balay a->Nbs = oldmat->Nbs; 31910ac07820SSatish Balay 31920ac07820SSatish Balay a->size = oldmat->size; 31930ac07820SSatish Balay a->rank = oldmat->rank; 3194aef5e8e0SSatish Balay a->donotstash = oldmat->donotstash; 3195aef5e8e0SSatish Balay a->roworiented = oldmat->roworiented; 3196f4259b30SLisandro Dalcin a->rowindices = NULL; 3197f4259b30SLisandro Dalcin a->rowvalues = NULL; 31980ac07820SSatish Balay a->getrowactive = PETSC_FALSE; 3199f4259b30SLisandro Dalcin a->barray = NULL; 3200899cda47SBarry Smith a->rstartbs = oldmat->rstartbs; 3201899cda47SBarry Smith a->rendbs = oldmat->rendbs; 3202899cda47SBarry Smith a->cstartbs = oldmat->cstartbs; 3203899cda47SBarry Smith a->cendbs = oldmat->cendbs; 32040ac07820SSatish Balay 3205133cdb44SSatish Balay /* hash table stuff */ 3206f4259b30SLisandro Dalcin a->ht = NULL; 3207f4259b30SLisandro Dalcin a->hd = NULL; 3208133cdb44SSatish Balay a->ht_size = 0; 3209133cdb44SSatish Balay a->ht_flag = oldmat->ht_flag; 321025fdafccSSatish Balay a->ht_fact = oldmat->ht_fact; 3211133cdb44SSatish Balay a->ht_total_ct = 0; 3212133cdb44SSatish Balay a->ht_insert_ct = 0; 3213133cdb44SSatish Balay 32149566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(a->rangebs, oldmat->rangebs, a->size + 1)); 32150ac07820SSatish Balay if (oldmat->colmap) { 3216aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 3217eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIDuplicate(oldmat->colmap, &a->colmap)); 321848e59246SSatish Balay #else 32199566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(a->Nbs, &a->colmap)); 32209566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(a->colmap, oldmat->colmap, a->Nbs)); 322148e59246SSatish Balay #endif 3222f4259b30SLisandro Dalcin } else a->colmap = NULL; 32234beb1cfeSHong Zhang 3224f4f49eeaSPierre Jolivet if (oldmat->garray && (len = ((Mat_SeqBAIJ *)oldmat->B->data)->nbs)) { 32259566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(len, &a->garray)); 32269566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(a->garray, oldmat->garray, len)); 3227f4259b30SLisandro Dalcin } else a->garray = NULL; 32280ac07820SSatish Balay 32299566063dSJacob Faibussowitsch PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)matin), matin->rmap->bs, &mat->bstash)); 32309566063dSJacob Faibussowitsch PetscCall(VecDuplicate(oldmat->lvec, &a->lvec)); 32319566063dSJacob Faibussowitsch PetscCall(VecScatterCopy(oldmat->Mvctx, &a->Mvctx)); 32327fff6886SHong Zhang 32339566063dSJacob Faibussowitsch PetscCall(MatDuplicate(oldmat->A, cpvalues, &a->A)); 32349566063dSJacob Faibussowitsch PetscCall(MatDuplicate(oldmat->B, cpvalues, &a->B)); 3235420957c1SBarry Smith } 32369566063dSJacob Faibussowitsch PetscCall(PetscFunctionListDuplicate(((PetscObject)matin)->qlist, &((PetscObject)mat)->qlist)); 32370ac07820SSatish Balay *newmat = mat; 32383ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 32390ac07820SSatish Balay } 324057b952d6SSatish Balay 3241618cc2edSLisandro Dalcin /* Used for both MPIBAIJ and MPISBAIJ matrices */ 3242d71ae5a4SJacob Faibussowitsch PetscErrorCode MatLoad_MPIBAIJ_Binary(Mat mat, PetscViewer viewer) 3243d71ae5a4SJacob Faibussowitsch { 3244b51a4376SLisandro Dalcin PetscInt header[4], M, N, nz, bs, m, n, mbs, nbs, rows, cols, sum, i, j, k; 3245b51a4376SLisandro Dalcin PetscInt *rowidxs, *colidxs, rs, cs, ce; 3246b51a4376SLisandro Dalcin PetscScalar *matvals; 3247b51a4376SLisandro Dalcin 3248b51a4376SLisandro Dalcin PetscFunctionBegin; 32499566063dSJacob Faibussowitsch PetscCall(PetscViewerSetUp(viewer)); 3250b51a4376SLisandro Dalcin 3251b51a4376SLisandro Dalcin /* read in matrix header */ 32529566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryRead(viewer, header, 4, NULL, PETSC_INT)); 32535f80ce2aSJacob Faibussowitsch PetscCheck(header[0] == MAT_FILE_CLASSID, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Not a matrix object in file"); 32549371c9d4SSatish Balay M = header[1]; 32559371c9d4SSatish Balay N = header[2]; 32569371c9d4SSatish Balay nz = header[3]; 32575f80ce2aSJacob Faibussowitsch PetscCheck(M >= 0, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Matrix row size (%" PetscInt_FMT ") in file is negative", M); 32585f80ce2aSJacob Faibussowitsch PetscCheck(N >= 0, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Matrix column size (%" PetscInt_FMT ") in file is negative", N); 32595f80ce2aSJacob Faibussowitsch PetscCheck(nz >= 0, PETSC_COMM_SELF, PETSC_ERR_FILE_UNEXPECTED, "Matrix stored in special format on disk, cannot load as MPIBAIJ"); 3260b51a4376SLisandro Dalcin 3261b51a4376SLisandro Dalcin /* set block sizes from the viewer's .info file */ 32629566063dSJacob Faibussowitsch PetscCall(MatLoad_Binary_BlockSizes(mat, viewer)); 3263618cc2edSLisandro Dalcin /* set local sizes if not set already */ 3264618cc2edSLisandro Dalcin if (mat->rmap->n < 0 && M == N) mat->rmap->n = mat->cmap->n; 3265618cc2edSLisandro Dalcin if (mat->cmap->n < 0 && M == N) mat->cmap->n = mat->rmap->n; 3266b51a4376SLisandro Dalcin /* set global sizes if not set already */ 3267b51a4376SLisandro Dalcin if (mat->rmap->N < 0) mat->rmap->N = M; 3268b51a4376SLisandro Dalcin if (mat->cmap->N < 0) mat->cmap->N = N; 32699566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(mat->rmap)); 32709566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(mat->cmap)); 3271b51a4376SLisandro Dalcin 3272b51a4376SLisandro Dalcin /* check if the matrix sizes are correct */ 32739566063dSJacob Faibussowitsch PetscCall(MatGetSize(mat, &rows, &cols)); 32745f80ce2aSJacob Faibussowitsch PetscCheck(M == rows && N == cols, PETSC_COMM_SELF, PETSC_ERR_FILE_UNEXPECTED, "Matrix in file of different sizes (%" PetscInt_FMT ", %" PetscInt_FMT ") than the input matrix (%" PetscInt_FMT ", %" PetscInt_FMT ")", M, N, rows, cols); 32759566063dSJacob Faibussowitsch PetscCall(MatGetBlockSize(mat, &bs)); 32769566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(mat, &m, &n)); 32779566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetRange(mat->rmap, &rs, NULL)); 32789566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetRange(mat->cmap, &cs, &ce)); 32799371c9d4SSatish Balay mbs = m / bs; 32809371c9d4SSatish Balay nbs = n / bs; 3281b51a4376SLisandro Dalcin 3282b51a4376SLisandro Dalcin /* read in row lengths and build row indices */ 32839566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m + 1, &rowidxs)); 32849566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryReadAll(viewer, rowidxs + 1, m, PETSC_DECIDE, M, PETSC_INT)); 32859371c9d4SSatish Balay rowidxs[0] = 0; 32869371c9d4SSatish Balay for (i = 0; i < m; i++) rowidxs[i + 1] += rowidxs[i]; 32871c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&rowidxs[m], &sum, 1, MPIU_INT, MPI_SUM, PetscObjectComm((PetscObject)viewer))); 32885f80ce2aSJacob Faibussowitsch PetscCheck(sum == nz, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Inconsistent matrix data in file: nonzeros = %" PetscInt_FMT ", sum-row-lengths = %" PetscInt_FMT, nz, sum); 3289b51a4376SLisandro Dalcin 3290b51a4376SLisandro Dalcin /* read in column indices and matrix values */ 32919566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(rowidxs[m], &colidxs, rowidxs[m], &matvals)); 32929566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryReadAll(viewer, colidxs, rowidxs[m], PETSC_DETERMINE, PETSC_DETERMINE, PETSC_INT)); 32939566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryReadAll(viewer, matvals, rowidxs[m], PETSC_DETERMINE, PETSC_DETERMINE, PETSC_SCALAR)); 3294b51a4376SLisandro Dalcin 3295b51a4376SLisandro Dalcin { /* preallocate matrix storage */ 3296b51a4376SLisandro Dalcin PetscBT bt; /* helper bit set to count diagonal nonzeros */ 3297b51a4376SLisandro Dalcin PetscHSetI ht; /* helper hash set to count off-diagonal nonzeros */ 3298618cc2edSLisandro Dalcin PetscBool sbaij, done; 3299b51a4376SLisandro Dalcin PetscInt *d_nnz, *o_nnz; 3300b51a4376SLisandro Dalcin 33019566063dSJacob Faibussowitsch PetscCall(PetscBTCreate(nbs, &bt)); 33029566063dSJacob Faibussowitsch PetscCall(PetscHSetICreate(&ht)); 33039566063dSJacob Faibussowitsch PetscCall(PetscCalloc2(mbs, &d_nnz, mbs, &o_nnz)); 33049566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)mat, MATMPISBAIJ, &sbaij)); 3305b51a4376SLisandro Dalcin for (i = 0; i < mbs; i++) { 33069566063dSJacob Faibussowitsch PetscCall(PetscBTMemzero(nbs, bt)); 33079566063dSJacob Faibussowitsch PetscCall(PetscHSetIClear(ht)); 3308618cc2edSLisandro Dalcin for (k = 0; k < bs; k++) { 3309618cc2edSLisandro Dalcin PetscInt row = bs * i + k; 3310618cc2edSLisandro Dalcin for (j = rowidxs[row]; j < rowidxs[row + 1]; j++) { 3311618cc2edSLisandro Dalcin PetscInt col = colidxs[j]; 3312618cc2edSLisandro Dalcin if (!sbaij || col >= row) { 3313618cc2edSLisandro Dalcin if (col >= cs && col < ce) { 3314618cc2edSLisandro Dalcin if (!PetscBTLookupSet(bt, (col - cs) / bs)) d_nnz[i]++; 3315b51a4376SLisandro Dalcin } else { 33169566063dSJacob Faibussowitsch PetscCall(PetscHSetIQueryAdd(ht, col / bs, &done)); 3317b51a4376SLisandro Dalcin if (done) o_nnz[i]++; 3318b51a4376SLisandro Dalcin } 3319b51a4376SLisandro Dalcin } 3320618cc2edSLisandro Dalcin } 3321618cc2edSLisandro Dalcin } 3322618cc2edSLisandro Dalcin } 33239566063dSJacob Faibussowitsch PetscCall(PetscBTDestroy(&bt)); 33249566063dSJacob Faibussowitsch PetscCall(PetscHSetIDestroy(&ht)); 33259566063dSJacob Faibussowitsch PetscCall(MatMPIBAIJSetPreallocation(mat, bs, 0, d_nnz, 0, o_nnz)); 33269566063dSJacob Faibussowitsch PetscCall(MatMPISBAIJSetPreallocation(mat, bs, 0, d_nnz, 0, o_nnz)); 33279566063dSJacob Faibussowitsch PetscCall(PetscFree2(d_nnz, o_nnz)); 3328b51a4376SLisandro Dalcin } 3329b51a4376SLisandro Dalcin 3330b51a4376SLisandro Dalcin /* store matrix values */ 3331b51a4376SLisandro Dalcin for (i = 0; i < m; i++) { 3332b51a4376SLisandro Dalcin PetscInt row = rs + i, s = rowidxs[i], e = rowidxs[i + 1]; 33339927e4dfSBarry Smith PetscUseTypeMethod(mat, setvalues, 1, &row, e - s, colidxs + s, matvals + s, INSERT_VALUES); 3334b51a4376SLisandro Dalcin } 3335b51a4376SLisandro Dalcin 33369566063dSJacob Faibussowitsch PetscCall(PetscFree(rowidxs)); 33379566063dSJacob Faibussowitsch PetscCall(PetscFree2(colidxs, matvals)); 33389566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(mat, MAT_FINAL_ASSEMBLY)); 33399566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(mat, MAT_FINAL_ASSEMBLY)); 33403ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3341b51a4376SLisandro Dalcin } 3342b51a4376SLisandro Dalcin 3343d71ae5a4SJacob Faibussowitsch PetscErrorCode MatLoad_MPIBAIJ(Mat mat, PetscViewer viewer) 3344d71ae5a4SJacob Faibussowitsch { 33457f489da9SVaclav Hapla PetscBool isbinary; 33464683f7a4SShri Abhyankar 33474683f7a4SShri Abhyankar PetscFunctionBegin; 33489566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary)); 33495f80ce2aSJacob Faibussowitsch PetscCheck(isbinary, PetscObjectComm((PetscObject)viewer), PETSC_ERR_SUP, "Viewer type %s not yet supported for reading %s matrices", ((PetscObject)viewer)->type_name, ((PetscObject)mat)->type_name); 33509566063dSJacob Faibussowitsch PetscCall(MatLoad_MPIBAIJ_Binary(mat, viewer)); 33513ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 33524683f7a4SShri Abhyankar } 33534683f7a4SShri Abhyankar 3354133cdb44SSatish Balay /*@ 335511a5261eSBarry Smith MatMPIBAIJSetHashTableFactor - Sets the factor required to compute the size of the matrices hash table 3356133cdb44SSatish Balay 3357133cdb44SSatish Balay Input Parameters: 3358a2b725a8SWilliam Gropp + mat - the matrix 3359a2b725a8SWilliam Gropp - fact - factor 3360133cdb44SSatish Balay 336111a5261eSBarry Smith Options Database Key: 336211a5261eSBarry Smith . -mat_use_hash_table <fact> - provide the factor 3363fee21e36SBarry Smith 33648c890885SBarry Smith Level: advanced 33658c890885SBarry Smith 336667be906fSBarry Smith .seealso: `Mat`, `MATMPIBAIJ`, `MatSetOption()` 3367133cdb44SSatish Balay @*/ 3368d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIBAIJSetHashTableFactor(Mat mat, PetscReal fact) 3369d71ae5a4SJacob Faibussowitsch { 33705bf65638SKris Buschelman PetscFunctionBegin; 3371cac4c232SBarry Smith PetscTryMethod(mat, "MatSetHashTableFactor_C", (Mat, PetscReal), (mat, fact)); 33723ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 33735bf65638SKris Buschelman } 33745bf65638SKris Buschelman 3375d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetHashTableFactor_MPIBAIJ(Mat mat, PetscReal fact) 3376d71ae5a4SJacob Faibussowitsch { 337725fdafccSSatish Balay Mat_MPIBAIJ *baij; 3378133cdb44SSatish Balay 3379133cdb44SSatish Balay PetscFunctionBegin; 3380133cdb44SSatish Balay baij = (Mat_MPIBAIJ *)mat->data; 3381133cdb44SSatish Balay baij->ht_fact = fact; 33823ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3383133cdb44SSatish Balay } 3384f2a5309cSSatish Balay 3385d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIBAIJGetSeqBAIJ(Mat A, Mat *Ad, Mat *Ao, const PetscInt *colmap[]) 3386d71ae5a4SJacob Faibussowitsch { 3387f2a5309cSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 3388ab4d48faSStefano Zampini PetscBool flg; 33895fd66863SKarl Rupp 3390f2a5309cSSatish Balay PetscFunctionBegin; 33919566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)A, MATMPIBAIJ, &flg)); 33925f80ce2aSJacob Faibussowitsch PetscCheck(flg, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "This function requires a MATMPIBAIJ matrix as input"); 339321e72a00SBarry Smith if (Ad) *Ad = a->A; 339421e72a00SBarry Smith if (Ao) *Ao = a->B; 339521e72a00SBarry Smith if (colmap) *colmap = a->garray; 33963ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3397f2a5309cSSatish Balay } 339885535b8eSBarry Smith 339985535b8eSBarry Smith /* 340085535b8eSBarry Smith Special version for direct calls from Fortran (to eliminate two function call overheads 340185535b8eSBarry Smith */ 340285535b8eSBarry Smith #if defined(PETSC_HAVE_FORTRAN_CAPS) 340385535b8eSBarry Smith #define matmpibaijsetvaluesblocked_ MATMPIBAIJSETVALUESBLOCKED 340485535b8eSBarry Smith #elif !defined(PETSC_HAVE_FORTRAN_UNDERSCORE) 340585535b8eSBarry Smith #define matmpibaijsetvaluesblocked_ matmpibaijsetvaluesblocked 340685535b8eSBarry Smith #endif 340785535b8eSBarry Smith 34082920cce0SJacob Faibussowitsch // PetscClangLinter pragma disable: -fdoc-synopsis-matching-symbol-name 340985535b8eSBarry Smith /*@C 341011a5261eSBarry Smith MatMPIBAIJSetValuesBlocked - Direct Fortran call to replace call to `MatSetValuesBlocked()` 341185535b8eSBarry Smith 3412c3339decSBarry Smith Collective 341385535b8eSBarry Smith 341485535b8eSBarry Smith Input Parameters: 3415fe59aa6dSJacob Faibussowitsch + matin - the matrix 341685535b8eSBarry Smith . min - number of input rows 341785535b8eSBarry Smith . im - input rows 341885535b8eSBarry Smith . nin - number of input columns 341985535b8eSBarry Smith . in - input columns 342085535b8eSBarry Smith . v - numerical values input 342111a5261eSBarry Smith - addvin - `INSERT_VALUES` or `ADD_VALUES` 342285535b8eSBarry Smith 342320f4b53cSBarry Smith Level: advanced 342420f4b53cSBarry Smith 3425fe59aa6dSJacob Faibussowitsch Developer Notes: 342611a5261eSBarry Smith This has a complete copy of `MatSetValuesBlocked_MPIBAIJ()` which is terrible code un-reuse. 342785535b8eSBarry Smith 342867be906fSBarry Smith .seealso: `Mat`, `MatSetValuesBlocked()` 342985535b8eSBarry Smith @*/ 343066976f2fSJacob Faibussowitsch PETSC_EXTERN PetscErrorCode matmpibaijsetvaluesblocked_(Mat *matin, PetscInt *min, const PetscInt im[], PetscInt *nin, const PetscInt in[], const MatScalar v[], InsertMode *addvin) 3431d71ae5a4SJacob Faibussowitsch { 343285535b8eSBarry Smith /* convert input arguments to C version */ 343385535b8eSBarry Smith Mat mat = *matin; 343485535b8eSBarry Smith PetscInt m = *min, n = *nin; 343585535b8eSBarry Smith InsertMode addv = *addvin; 343685535b8eSBarry Smith 343785535b8eSBarry Smith Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 343885535b8eSBarry Smith const MatScalar *value; 343985535b8eSBarry Smith MatScalar *barray = baij->barray; 3440ace3abfcSBarry Smith PetscBool roworiented = baij->roworiented; 344185535b8eSBarry Smith PetscInt i, j, ii, jj, row, col, rstart = baij->rstartbs; 344285535b8eSBarry Smith PetscInt rend = baij->rendbs, cstart = baij->cstartbs, stepval; 3443d0f46423SBarry Smith PetscInt cend = baij->cendbs, bs = mat->rmap->bs, bs2 = baij->bs2; 344485535b8eSBarry Smith 344585535b8eSBarry Smith PetscFunctionBegin; 344685535b8eSBarry Smith /* tasks normally handled by MatSetValuesBlocked() */ 344726fbe8dcSKarl Rupp if (mat->insertmode == NOT_SET_VALUES) mat->insertmode = addv; 34485f80ce2aSJacob Faibussowitsch else PetscCheck(mat->insertmode == addv, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Cannot mix add values and insert values"); 34495f80ce2aSJacob Faibussowitsch PetscCheck(!mat->factortype, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Not for factored matrix"); 345085535b8eSBarry Smith if (mat->assembled) { 345185535b8eSBarry Smith mat->was_assembled = PETSC_TRUE; 345285535b8eSBarry Smith mat->assembled = PETSC_FALSE; 345385535b8eSBarry Smith } 34549566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(MAT_SetValues, mat, 0, 0, 0)); 345585535b8eSBarry Smith 345685535b8eSBarry Smith if (!barray) { 34579566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(bs2, &barray)); 345885535b8eSBarry Smith baij->barray = barray; 345985535b8eSBarry Smith } 346085535b8eSBarry Smith 346126fbe8dcSKarl Rupp if (roworiented) stepval = (n - 1) * bs; 346226fbe8dcSKarl Rupp else stepval = (m - 1) * bs; 346326fbe8dcSKarl Rupp 346485535b8eSBarry Smith for (i = 0; i < m; i++) { 346585535b8eSBarry Smith if (im[i] < 0) continue; 34666bdcaf15SBarry Smith PetscCheck(im[i] < baij->Mbs, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large, row %" PetscInt_FMT " max %" PetscInt_FMT, im[i], baij->Mbs - 1); 346785535b8eSBarry Smith if (im[i] >= rstart && im[i] < rend) { 346885535b8eSBarry Smith row = im[i] - rstart; 346985535b8eSBarry Smith for (j = 0; j < n; j++) { 347085535b8eSBarry Smith /* If NumCol = 1 then a copy is not required */ 347185535b8eSBarry Smith if ((roworiented) && (n == 1)) { 347285535b8eSBarry Smith barray = (MatScalar *)v + i * bs2; 347385535b8eSBarry Smith } else if ((!roworiented) && (m == 1)) { 347485535b8eSBarry Smith barray = (MatScalar *)v + j * bs2; 347585535b8eSBarry Smith } else { /* Here a copy is required */ 347685535b8eSBarry Smith if (roworiented) { 347785535b8eSBarry Smith value = v + i * (stepval + bs) * bs + j * bs; 347885535b8eSBarry Smith } else { 347985535b8eSBarry Smith value = v + j * (stepval + bs) * bs + i * bs; 348085535b8eSBarry Smith } 348185535b8eSBarry Smith for (ii = 0; ii < bs; ii++, value += stepval) { 3482ad540459SPierre Jolivet for (jj = 0; jj < bs; jj++) *barray++ = *value++; 348385535b8eSBarry Smith } 348485535b8eSBarry Smith barray -= bs2; 348585535b8eSBarry Smith } 348685535b8eSBarry Smith 348785535b8eSBarry Smith if (in[j] >= cstart && in[j] < cend) { 348885535b8eSBarry Smith col = in[j] - cstart; 34899566063dSJacob Faibussowitsch PetscCall(MatSetValuesBlocked_SeqBAIJ_Inlined(baij->A, row, col, barray, addv, im[i], in[j])); 3490f7d195e4SLawrence Mitchell } else if (in[j] < 0) { 3491f7d195e4SLawrence Mitchell continue; 3492f7d195e4SLawrence Mitchell } else { 3493f7d195e4SLawrence Mitchell PetscCheck(in[j] < baij->Nbs, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large, col %" PetscInt_FMT " max %" PetscInt_FMT, in[j], baij->Nbs - 1); 349485535b8eSBarry Smith if (mat->was_assembled) { 349548a46eb9SPierre Jolivet if (!baij->colmap) PetscCall(MatCreateColmap_MPIBAIJ_Private(mat)); 349685535b8eSBarry Smith 349785535b8eSBarry Smith #if defined(PETSC_USE_DEBUG) 349885535b8eSBarry Smith #if defined(PETSC_USE_CTABLE) 34999371c9d4SSatish Balay { 35009371c9d4SSatish Balay PetscInt data; 3501eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIGetWithDefault(baij->colmap, in[j] + 1, 0, &data)); 350208401ef6SPierre Jolivet PetscCheck((data - 1) % bs == 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Incorrect colmap"); 350385535b8eSBarry Smith } 350485535b8eSBarry Smith #else 350508401ef6SPierre Jolivet PetscCheck((baij->colmap[in[j]] - 1) % bs == 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Incorrect colmap"); 350685535b8eSBarry Smith #endif 350785535b8eSBarry Smith #endif 350885535b8eSBarry Smith #if defined(PETSC_USE_CTABLE) 3509eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIGetWithDefault(baij->colmap, in[j] + 1, 0, &col)); 351085535b8eSBarry Smith col = (col - 1) / bs; 351185535b8eSBarry Smith #else 351285535b8eSBarry Smith col = (baij->colmap[in[j]] - 1) / bs; 351385535b8eSBarry Smith #endif 3514f4f49eeaSPierre Jolivet if (col < 0 && !((Mat_SeqBAIJ *)baij->A->data)->nonew) { 35159566063dSJacob Faibussowitsch PetscCall(MatDisAssemble_MPIBAIJ(mat)); 351685535b8eSBarry Smith col = in[j]; 351785535b8eSBarry Smith } 351826fbe8dcSKarl Rupp } else col = in[j]; 35199566063dSJacob Faibussowitsch PetscCall(MatSetValuesBlocked_SeqBAIJ_Inlined(baij->B, row, col, barray, addv, im[i], in[j])); 352085535b8eSBarry Smith } 352185535b8eSBarry Smith } 352285535b8eSBarry Smith } else { 352385535b8eSBarry Smith if (!baij->donotstash) { 352485535b8eSBarry Smith if (roworiented) { 35259566063dSJacob Faibussowitsch PetscCall(MatStashValuesRowBlocked_Private(&mat->bstash, im[i], n, in, v, m, n, i)); 352685535b8eSBarry Smith } else { 35279566063dSJacob Faibussowitsch PetscCall(MatStashValuesColBlocked_Private(&mat->bstash, im[i], n, in, v, m, n, i)); 352885535b8eSBarry Smith } 352985535b8eSBarry Smith } 353085535b8eSBarry Smith } 353185535b8eSBarry Smith } 353285535b8eSBarry Smith 353385535b8eSBarry Smith /* task normally handled by MatSetValuesBlocked() */ 35349566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(MAT_SetValues, mat, 0, 0, 0)); 35353ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 353685535b8eSBarry Smith } 3537dfb205c3SBarry Smith 3538dfb205c3SBarry Smith /*@ 3539d8a51d2aSBarry Smith MatCreateMPIBAIJWithArrays - creates a `MATMPIBAIJ` matrix using arrays that contain in standard block CSR format for the local rows. 3540dfb205c3SBarry Smith 3541d083f849SBarry Smith Collective 3542dfb205c3SBarry Smith 3543dfb205c3SBarry Smith Input Parameters: 3544dfb205c3SBarry Smith + comm - MPI communicator 3545dfb205c3SBarry Smith . bs - the block size, only a block size of 1 is supported 354611a5261eSBarry Smith . m - number of local rows (Cannot be `PETSC_DECIDE`) 3547dfb205c3SBarry Smith . n - This value should be the same as the local size used in creating the 3548d8a51d2aSBarry Smith x vector for the matrix-vector product $ y = Ax $. (or `PETSC_DECIDE` to have 3549d8a51d2aSBarry Smith calculated if `N` is given) For square matrices `n` is almost always `m`. 3550d8a51d2aSBarry Smith . M - number of global rows (or `PETSC_DETERMINE` to have calculated if `m` is given) 3551d8a51d2aSBarry Smith . N - number of global columns (or `PETSC_DETERMINE` to have calculated if `n` is given) 3552483a2f95SBarry Smith . i - row indices; that is i[0] = 0, i[row] = i[row-1] + number of block elements in that rowth block row of the matrix 3553dfb205c3SBarry Smith . j - column indices 3554dfb205c3SBarry Smith - a - matrix values 3555dfb205c3SBarry Smith 3556dfb205c3SBarry Smith Output Parameter: 3557dfb205c3SBarry Smith . mat - the matrix 3558dfb205c3SBarry Smith 3559dfb205c3SBarry Smith Level: intermediate 3560dfb205c3SBarry Smith 3561dfb205c3SBarry Smith Notes: 356267be906fSBarry Smith The `i`, `j`, and `a` arrays ARE copied by this routine into the internal format used by PETSc; 3563dfb205c3SBarry Smith thus you CANNOT change the matrix entries by changing the values of a[] after you have 356411a5261eSBarry Smith called this routine. Use `MatCreateMPIAIJWithSplitArrays()` to avoid needing to copy the arrays. 3565dfb205c3SBarry Smith 35663adadaf3SJed Brown The order of the entries in values is the same as the block compressed sparse row storage format; that is, it is 35673adadaf3SJed Brown the same as a three dimensional array in Fortran values(bs,bs,nnz) that contains the first column of the first 35683adadaf3SJed Brown block, followed by the second column of the first block etc etc. That is, the blocks are contiguous in memory 35693adadaf3SJed Brown with column-major ordering within blocks. 35703adadaf3SJed Brown 3571d8a51d2aSBarry Smith The `i` and `j` indices are 0 based, and `i` indices are indices corresponding to the local `j` array. 3572dfb205c3SBarry Smith 357367be906fSBarry Smith .seealso: `Mat`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`, 35747d2c085eSPierre Jolivet `MATMPIAIJ`, `MatCreateAIJ()`, `MatCreateMPIAIJWithSplitArrays()` 3575dfb205c3SBarry Smith @*/ 3576d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIBAIJWithArrays(MPI_Comm comm, PetscInt bs, PetscInt m, PetscInt n, PetscInt M, PetscInt N, const PetscInt i[], const PetscInt j[], const PetscScalar a[], Mat *mat) 3577d71ae5a4SJacob Faibussowitsch { 3578dfb205c3SBarry Smith PetscFunctionBegin; 35795f80ce2aSJacob Faibussowitsch PetscCheck(!i[0], PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "i (row indices) must start with 0"); 35805f80ce2aSJacob Faibussowitsch PetscCheck(m >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "local number of rows (m) cannot be PETSC_DECIDE, or negative"); 35819566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, mat)); 35829566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*mat, m, n, M, N)); 35839566063dSJacob Faibussowitsch PetscCall(MatSetType(*mat, MATMPIBAIJ)); 35849566063dSJacob Faibussowitsch PetscCall(MatSetBlockSize(*mat, bs)); 35859566063dSJacob Faibussowitsch PetscCall(MatSetUp(*mat)); 35869566063dSJacob Faibussowitsch PetscCall(MatSetOption(*mat, MAT_ROW_ORIENTED, PETSC_FALSE)); 35879566063dSJacob Faibussowitsch PetscCall(MatMPIBAIJSetPreallocationCSR(*mat, bs, i, j, a)); 35889566063dSJacob Faibussowitsch PetscCall(MatSetOption(*mat, MAT_ROW_ORIENTED, PETSC_TRUE)); 35893ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3590dfb205c3SBarry Smith } 3591e561ad89SHong Zhang 3592d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIMatConcatenateSeqMat_MPIBAIJ(MPI_Comm comm, Mat inmat, PetscInt n, MatReuse scall, Mat *outmat) 3593d71ae5a4SJacob Faibussowitsch { 3594bd153df0SHong Zhang PetscInt m, N, i, rstart, nnz, Ii, bs, cbs; 3595bd153df0SHong Zhang PetscInt *indx; 3596bd153df0SHong Zhang PetscScalar *values; 3597e561ad89SHong Zhang 3598e561ad89SHong Zhang PetscFunctionBegin; 35999566063dSJacob Faibussowitsch PetscCall(MatGetSize(inmat, &m, &N)); 3600bd153df0SHong Zhang if (scall == MAT_INITIAL_MATRIX) { /* symbolic phase */ 3601bd153df0SHong Zhang Mat_SeqBAIJ *a = (Mat_SeqBAIJ *)inmat->data; 36022c6ba4edSHong Zhang PetscInt *dnz, *onz, mbs, Nbs, nbs; 3603bd153df0SHong Zhang PetscInt *bindx, rmax = a->rmax, j; 360477f764caSHong Zhang PetscMPIInt rank, size; 3605e561ad89SHong Zhang 36069566063dSJacob Faibussowitsch PetscCall(MatGetBlockSizes(inmat, &bs, &cbs)); 36079371c9d4SSatish Balay mbs = m / bs; 36089371c9d4SSatish Balay Nbs = N / cbs; 360948a46eb9SPierre Jolivet if (n == PETSC_DECIDE) PetscCall(PetscSplitOwnershipBlock(comm, cbs, &n, &N)); 3610da91a574SPierre Jolivet nbs = n / cbs; 3611e561ad89SHong Zhang 36129566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(rmax, &bindx)); 3613d0609cedSBarry Smith MatPreallocateBegin(comm, mbs, nbs, dnz, onz); /* inline function, output __end and __rstart are used below */ 361477f764caSHong Zhang 36159566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 36169566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &size)); 361777f764caSHong Zhang if (rank == size - 1) { 361877f764caSHong Zhang /* Check sum(nbs) = Nbs */ 36195f80ce2aSJacob Faibussowitsch PetscCheck(__end == Nbs, PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "Sum of local block columns %" PetscInt_FMT " != global block columns %" PetscInt_FMT, __end, Nbs); 362077f764caSHong Zhang } 362177f764caSHong Zhang 3622d0609cedSBarry Smith rstart = __rstart; /* block rstart of *outmat; see inline function MatPreallocateBegin */ 3623bd153df0SHong Zhang for (i = 0; i < mbs; i++) { 36249566063dSJacob Faibussowitsch PetscCall(MatGetRow_SeqBAIJ(inmat, i * bs, &nnz, &indx, NULL)); /* non-blocked nnz and indx */ 3625647a6520SHong Zhang nnz = nnz / bs; 3626647a6520SHong Zhang for (j = 0; j < nnz; j++) bindx[j] = indx[j * bs] / bs; 36279566063dSJacob Faibussowitsch PetscCall(MatPreallocateSet(i + rstart, nnz, bindx, dnz, onz)); 36289566063dSJacob Faibussowitsch PetscCall(MatRestoreRow_SeqBAIJ(inmat, i * bs, &nnz, &indx, NULL)); 3629e561ad89SHong Zhang } 36309566063dSJacob Faibussowitsch PetscCall(PetscFree(bindx)); 3631e561ad89SHong Zhang 36329566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, outmat)); 36339566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*outmat, m, n, PETSC_DETERMINE, PETSC_DETERMINE)); 36349566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizes(*outmat, bs, cbs)); 36359566063dSJacob Faibussowitsch PetscCall(MatSetType(*outmat, MATBAIJ)); 36369566063dSJacob Faibussowitsch PetscCall(MatSeqBAIJSetPreallocation(*outmat, bs, 0, dnz)); 36379566063dSJacob Faibussowitsch PetscCall(MatMPIBAIJSetPreallocation(*outmat, bs, 0, dnz, 0, onz)); 3638d0609cedSBarry Smith MatPreallocateEnd(dnz, onz); 36399566063dSJacob Faibussowitsch PetscCall(MatSetOption(*outmat, MAT_NO_OFF_PROC_ENTRIES, PETSC_TRUE)); 3640e561ad89SHong Zhang } 3641e561ad89SHong Zhang 3642bd153df0SHong Zhang /* numeric phase */ 36439566063dSJacob Faibussowitsch PetscCall(MatGetBlockSizes(inmat, &bs, &cbs)); 36449566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(*outmat, &rstart, NULL)); 3645e561ad89SHong Zhang 3646e561ad89SHong Zhang for (i = 0; i < m; i++) { 36479566063dSJacob Faibussowitsch PetscCall(MatGetRow_SeqBAIJ(inmat, i, &nnz, &indx, &values)); 3648e561ad89SHong Zhang Ii = i + rstart; 36499566063dSJacob Faibussowitsch PetscCall(MatSetValues(*outmat, 1, &Ii, nnz, indx, values, INSERT_VALUES)); 36509566063dSJacob Faibussowitsch PetscCall(MatRestoreRow_SeqBAIJ(inmat, i, &nnz, &indx, &values)); 3651e561ad89SHong Zhang } 36529566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(*outmat, MAT_FINAL_ASSEMBLY)); 36539566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(*outmat, MAT_FINAL_ASSEMBLY)); 36543ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3655e561ad89SHong Zhang } 3656