xref: /petsc/src/mat/impls/baij/mpi/mpibaij.c (revision b758ae8c44070759d1facc3d2663bdd721e4de8f)
1c6db04a5SJed Brown #include <../src/mat/impls/baij/mpi/mpibaij.h> /*I  "petscmat.h"  I*/
2c5d9258eSSatish Balay 
3b51a4376SLisandro Dalcin #include <petsc/private/hashseti.h>
4c6db04a5SJed Brown #include <petscblaslapack.h>
565a92638SMatthew G. Knepley #include <petscsf.h>
679bdfe76SSatish Balay 
766976f2fSJacob Faibussowitsch static PetscErrorCode MatDestroy_MPIBAIJ(Mat mat)
826cec326SBarry Smith {
926cec326SBarry Smith   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data;
1026cec326SBarry Smith 
1126cec326SBarry Smith   PetscFunctionBegin;
1226cec326SBarry Smith   PetscCall(PetscLogObjectState((PetscObject)mat, "Rows=%" PetscInt_FMT ",Cols=%" PetscInt_FMT, mat->rmap->N, mat->cmap->N));
1326cec326SBarry Smith   PetscCall(MatStashDestroy_Private(&mat->stash));
1426cec326SBarry Smith   PetscCall(MatStashDestroy_Private(&mat->bstash));
1526cec326SBarry Smith   PetscCall(MatDestroy(&baij->A));
1626cec326SBarry Smith   PetscCall(MatDestroy(&baij->B));
1726cec326SBarry Smith #if defined(PETSC_USE_CTABLE)
1826cec326SBarry Smith   PetscCall(PetscHMapIDestroy(&baij->colmap));
1926cec326SBarry Smith #else
2026cec326SBarry Smith   PetscCall(PetscFree(baij->colmap));
2126cec326SBarry Smith #endif
2226cec326SBarry Smith   PetscCall(PetscFree(baij->garray));
2326cec326SBarry Smith   PetscCall(VecDestroy(&baij->lvec));
2426cec326SBarry Smith   PetscCall(VecScatterDestroy(&baij->Mvctx));
2526cec326SBarry Smith   PetscCall(PetscFree2(baij->rowvalues, baij->rowindices));
2626cec326SBarry Smith   PetscCall(PetscFree(baij->barray));
2726cec326SBarry Smith   PetscCall(PetscFree2(baij->hd, baij->ht));
2826cec326SBarry Smith   PetscCall(PetscFree(baij->rangebs));
2926cec326SBarry Smith   PetscCall(PetscFree(mat->data));
3026cec326SBarry Smith 
3126cec326SBarry Smith   PetscCall(PetscObjectChangeTypeName((PetscObject)mat, NULL));
3226cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatStoreValues_C", NULL));
3326cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatRetrieveValues_C", NULL));
3426cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMPIBAIJSetPreallocation_C", NULL));
3526cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMPIBAIJSetPreallocationCSR_C", NULL));
3626cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDiagonalScaleLocal_C", NULL));
3726cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatSetHashTableFactor_C", NULL));
3826cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpibaij_mpisbaij_C", NULL));
3926cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpibaij_mpiadj_C", NULL));
4026cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpibaij_mpiaij_C", NULL));
4126cec326SBarry Smith #if defined(PETSC_HAVE_HYPRE)
4226cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpibaij_hypre_C", NULL));
4326cec326SBarry Smith #endif
4426cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpibaij_is_C", NULL));
4526cec326SBarry Smith   PetscFunctionReturn(PETSC_SUCCESS);
4626cec326SBarry Smith }
4726cec326SBarry Smith 
4826cec326SBarry Smith /* defines MatSetValues_MPI_Hash(), MatAssemblyBegin_MPI_Hash(), and  MatAssemblyEnd_MPI_Hash() */
4926cec326SBarry Smith #define TYPE BAIJ
5026cec326SBarry Smith #include "../src/mat/impls/aij/mpi/mpihashmat.h"
5126cec326SBarry Smith #undef TYPE
5226cec326SBarry Smith 
537ea3e4caSstefano_zampini #if defined(PETSC_HAVE_HYPRE)
547ea3e4caSstefano_zampini PETSC_INTERN PetscErrorCode MatConvert_AIJ_HYPRE(Mat, MatType, MatReuse, Mat *);
557ea3e4caSstefano_zampini #endif
567ea3e4caSstefano_zampini 
5766976f2fSJacob Faibussowitsch static PetscErrorCode MatGetRowMaxAbs_MPIBAIJ(Mat A, Vec v, PetscInt idx[])
58d71ae5a4SJacob Faibussowitsch {
597843d17aSBarry Smith   Mat_MPIBAIJ       *a = (Mat_MPIBAIJ *)A->data;
604e879edeSHong Zhang   PetscInt           i, *idxb = NULL, m = A->rmap->n, bs = A->cmap->bs;
614e879edeSHong Zhang   PetscScalar       *va, *vv;
624e879edeSHong Zhang   Vec                vB, vA;
634e879edeSHong Zhang   const PetscScalar *vb;
647843d17aSBarry Smith 
657843d17aSBarry Smith   PetscFunctionBegin;
669566063dSJacob Faibussowitsch   PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &vA));
679566063dSJacob Faibussowitsch   PetscCall(MatGetRowMaxAbs(a->A, vA, idx));
684e879edeSHong Zhang 
699566063dSJacob Faibussowitsch   PetscCall(VecGetArrayWrite(vA, &va));
70985db425SBarry Smith   if (idx) {
714e879edeSHong Zhang     for (i = 0; i < m; i++) {
7226fbe8dcSKarl Rupp       if (PetscAbsScalar(va[i])) idx[i] += A->cmap->rstart;
7326fbe8dcSKarl Rupp     }
74985db425SBarry Smith   }
757843d17aSBarry Smith 
769566063dSJacob Faibussowitsch   PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &vB));
779566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(m, &idxb));
789566063dSJacob Faibussowitsch   PetscCall(MatGetRowMaxAbs(a->B, vB, idxb));
797843d17aSBarry Smith 
809566063dSJacob Faibussowitsch   PetscCall(VecGetArrayWrite(v, &vv));
819566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(vB, &vb));
824e879edeSHong Zhang   for (i = 0; i < m; i++) {
8326fbe8dcSKarl Rupp     if (PetscAbsScalar(va[i]) < PetscAbsScalar(vb[i])) {
844e879edeSHong Zhang       vv[i] = vb[i];
854e879edeSHong Zhang       if (idx) idx[i] = bs * a->garray[idxb[i] / bs] + (idxb[i] % bs);
864e879edeSHong Zhang     } else {
874e879edeSHong Zhang       vv[i] = va[i];
889371c9d4SSatish Balay       if (idx && PetscAbsScalar(va[i]) == PetscAbsScalar(vb[i]) && idxb[i] != -1 && idx[i] > bs * a->garray[idxb[i] / bs] + (idxb[i] % bs)) idx[i] = bs * a->garray[idxb[i] / bs] + (idxb[i] % bs);
8926fbe8dcSKarl Rupp     }
907843d17aSBarry Smith   }
919566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayWrite(vA, &vv));
929566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayWrite(vA, &va));
939566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(vB, &vb));
949566063dSJacob Faibussowitsch   PetscCall(PetscFree(idxb));
959566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&vA));
969566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&vB));
973ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
987843d17aSBarry Smith }
997843d17aSBarry Smith 
10066976f2fSJacob Faibussowitsch static PetscErrorCode MatStoreValues_MPIBAIJ(Mat mat)
101d71ae5a4SJacob Faibussowitsch {
1027fc3c18eSBarry Smith   Mat_MPIBAIJ *aij = (Mat_MPIBAIJ *)mat->data;
1037fc3c18eSBarry Smith 
1047fc3c18eSBarry Smith   PetscFunctionBegin;
1059566063dSJacob Faibussowitsch   PetscCall(MatStoreValues(aij->A));
1069566063dSJacob Faibussowitsch   PetscCall(MatStoreValues(aij->B));
1073ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1087fc3c18eSBarry Smith }
1097fc3c18eSBarry Smith 
11066976f2fSJacob Faibussowitsch static PetscErrorCode MatRetrieveValues_MPIBAIJ(Mat mat)
111d71ae5a4SJacob Faibussowitsch {
1127fc3c18eSBarry Smith   Mat_MPIBAIJ *aij = (Mat_MPIBAIJ *)mat->data;
1137fc3c18eSBarry Smith 
1147fc3c18eSBarry Smith   PetscFunctionBegin;
1159566063dSJacob Faibussowitsch   PetscCall(MatRetrieveValues(aij->A));
1169566063dSJacob Faibussowitsch   PetscCall(MatRetrieveValues(aij->B));
1173ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1187fc3c18eSBarry Smith }
1197fc3c18eSBarry Smith 
120537820f0SBarry Smith /*
121537820f0SBarry Smith      Local utility routine that creates a mapping from the global column
12257b952d6SSatish Balay    number to the local number in the off-diagonal part of the local
123e06f6af7SJed Brown    storage of the matrix.  This is done in a non scalable way since the
12457b952d6SSatish Balay    length of colmap equals the global matrix length.
12557b952d6SSatish Balay */
126d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateColmap_MPIBAIJ_Private(Mat mat)
127d71ae5a4SJacob Faibussowitsch {
12857b952d6SSatish Balay   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data;
12957b952d6SSatish Balay   Mat_SeqBAIJ *B    = (Mat_SeqBAIJ *)baij->B->data;
130d0f46423SBarry Smith   PetscInt     nbs = B->nbs, i, bs = mat->rmap->bs;
13157b952d6SSatish Balay 
132d64ed03dSBarry Smith   PetscFunctionBegin;
133aa482453SBarry Smith #if defined(PETSC_USE_CTABLE)
134eec179cfSJacob Faibussowitsch   PetscCall(PetscHMapICreateWithSize(baij->nbs, &baij->colmap));
135c76ffc5fSJacob Faibussowitsch   for (i = 0; i < nbs; i++) PetscCall(PetscHMapISet(baij->colmap, baij->garray[i] + 1, i * bs + 1));
13648e59246SSatish Balay #else
1379566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(baij->Nbs + 1, &baij->colmap));
138928fc39bSSatish Balay   for (i = 0; i < nbs; i++) baij->colmap[baij->garray[i]] = i * bs + 1;
13948e59246SSatish Balay #endif
1403ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
14157b952d6SSatish Balay }
14257b952d6SSatish Balay 
143d40312a9SBarry Smith #define MatSetValues_SeqBAIJ_A_Private(row, col, value, addv, orow, ocol) \
144a8f51744SPierre Jolivet   do { \
14580c1aa95SSatish Balay     brow = row / bs; \
1468e3a54c0SPierre Jolivet     rp   = PetscSafePointerPlusOffset(aj, ai[brow]); \
1478e3a54c0SPierre Jolivet     ap   = PetscSafePointerPlusOffset(aa, bs2 * ai[brow]); \
1489371c9d4SSatish Balay     rmax = aimax[brow]; \
1499371c9d4SSatish Balay     nrow = ailen[brow]; \
15080c1aa95SSatish Balay     bcol = col / bs; \
1519371c9d4SSatish Balay     ridx = row % bs; \
1529371c9d4SSatish Balay     cidx = col % bs; \
1539371c9d4SSatish Balay     low  = 0; \
1549371c9d4SSatish Balay     high = nrow; \
155ab26458aSBarry Smith     while (high - low > 3) { \
156ab26458aSBarry Smith       t = (low + high) / 2; \
157ab26458aSBarry Smith       if (rp[t] > bcol) high = t; \
158ab26458aSBarry Smith       else low = t; \
159ab26458aSBarry Smith     } \
160ab26458aSBarry Smith     for (_i = low; _i < high; _i++) { \
16180c1aa95SSatish Balay       if (rp[_i] > bcol) break; \
16280c1aa95SSatish Balay       if (rp[_i] == bcol) { \
16380c1aa95SSatish Balay         bap = ap + bs2 * _i + bs * cidx + ridx; \
164eada6651SSatish Balay         if (addv == ADD_VALUES) *bap += value; \
165eada6651SSatish Balay         else *bap = value; \
166ac7a638eSSatish Balay         goto a_noinsert; \
16780c1aa95SSatish Balay       } \
16880c1aa95SSatish Balay     } \
16989280ab3SLois Curfman McInnes     if (a->nonew == 1) goto a_noinsert; \
1705f80ce2aSJacob Faibussowitsch     PetscCheck(a->nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", orow, ocol); \
171fef13f97SBarry Smith     MatSeqXAIJReallocateAIJ(A, a->mbs, bs2, nrow, brow, bcol, rmax, aa, ai, aj, rp, ap, aimax, a->nonew, MatScalar); \
17280c1aa95SSatish Balay     N = nrow++ - 1; \
17380c1aa95SSatish Balay     /* shift up all the later entries in this row */ \
1749566063dSJacob Faibussowitsch     PetscCall(PetscArraymove(rp + _i + 1, rp + _i, N - _i + 1)); \
1759566063dSJacob Faibussowitsch     PetscCall(PetscArraymove(ap + bs2 * (_i + 1), ap + bs2 * _i, bs2 * (N - _i + 1))); \
1769566063dSJacob Faibussowitsch     PetscCall(PetscArrayzero(ap + bs2 * _i, bs2)); \
17780c1aa95SSatish Balay     rp[_i]                          = bcol; \
17880c1aa95SSatish Balay     ap[bs2 * _i + bs * cidx + ridx] = value; \
179ac7a638eSSatish Balay   a_noinsert:; \
18080c1aa95SSatish Balay     ailen[brow] = nrow; \
181a8f51744SPierre Jolivet   } while (0)
18257b952d6SSatish Balay 
183d40312a9SBarry Smith #define MatSetValues_SeqBAIJ_B_Private(row, col, value, addv, orow, ocol) \
184a8f51744SPierre Jolivet   do { \
185ac7a638eSSatish Balay     brow = row / bs; \
1868e3a54c0SPierre Jolivet     rp   = PetscSafePointerPlusOffset(bj, bi[brow]); \
1878e3a54c0SPierre Jolivet     ap   = PetscSafePointerPlusOffset(ba, bs2 * bi[brow]); \
1889371c9d4SSatish Balay     rmax = bimax[brow]; \
1899371c9d4SSatish Balay     nrow = bilen[brow]; \
190ac7a638eSSatish Balay     bcol = col / bs; \
1919371c9d4SSatish Balay     ridx = row % bs; \
1929371c9d4SSatish Balay     cidx = col % bs; \
1939371c9d4SSatish Balay     low  = 0; \
1949371c9d4SSatish Balay     high = nrow; \
195ac7a638eSSatish Balay     while (high - low > 3) { \
196ac7a638eSSatish Balay       t = (low + high) / 2; \
197ac7a638eSSatish Balay       if (rp[t] > bcol) high = t; \
198ac7a638eSSatish Balay       else low = t; \
199ac7a638eSSatish Balay     } \
200ac7a638eSSatish Balay     for (_i = low; _i < high; _i++) { \
201ac7a638eSSatish Balay       if (rp[_i] > bcol) break; \
202ac7a638eSSatish Balay       if (rp[_i] == bcol) { \
203ac7a638eSSatish Balay         bap = ap + bs2 * _i + bs * cidx + ridx; \
204ac7a638eSSatish Balay         if (addv == ADD_VALUES) *bap += value; \
205ac7a638eSSatish Balay         else *bap = value; \
206ac7a638eSSatish Balay         goto b_noinsert; \
207ac7a638eSSatish Balay       } \
208ac7a638eSSatish Balay     } \
20989280ab3SLois Curfman McInnes     if (b->nonew == 1) goto b_noinsert; \
2105f80ce2aSJacob Faibussowitsch     PetscCheck(b->nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero at global row/column  (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", orow, ocol); \
211fef13f97SBarry Smith     MatSeqXAIJReallocateAIJ(B, b->mbs, bs2, nrow, brow, bcol, rmax, ba, bi, bj, rp, ap, bimax, b->nonew, MatScalar); \
212ac7a638eSSatish Balay     N = nrow++ - 1; \
213ac7a638eSSatish Balay     /* shift up all the later entries in this row */ \
2149566063dSJacob Faibussowitsch     PetscCall(PetscArraymove(rp + _i + 1, rp + _i, N - _i + 1)); \
2159566063dSJacob Faibussowitsch     PetscCall(PetscArraymove(ap + bs2 * (_i + 1), ap + bs2 * _i, bs2 * (N - _i + 1))); \
2169566063dSJacob Faibussowitsch     PetscCall(PetscArrayzero(ap + bs2 * _i, bs2)); \
217ac7a638eSSatish Balay     rp[_i]                          = bcol; \
218ac7a638eSSatish Balay     ap[bs2 * _i + bs * cidx + ridx] = value; \
219ac7a638eSSatish Balay   b_noinsert:; \
220ac7a638eSSatish Balay     bilen[brow] = nrow; \
221a8f51744SPierre Jolivet   } while (0)
222ac7a638eSSatish Balay 
223d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetValues_MPIBAIJ(Mat mat, PetscInt m, const PetscInt im[], PetscInt n, const PetscInt in[], const PetscScalar v[], InsertMode addv)
224d71ae5a4SJacob Faibussowitsch {
22557b952d6SSatish Balay   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data;
22693fea6afSBarry Smith   MatScalar    value;
227ace3abfcSBarry Smith   PetscBool    roworiented = baij->roworiented;
228b24ad042SBarry Smith   PetscInt     i, j, row, col;
229d0f46423SBarry Smith   PetscInt     rstart_orig = mat->rmap->rstart;
230d0f46423SBarry Smith   PetscInt     rend_orig = mat->rmap->rend, cstart_orig = mat->cmap->rstart;
231d0f46423SBarry Smith   PetscInt     cend_orig = mat->cmap->rend, bs = mat->rmap->bs;
23257b952d6SSatish Balay 
233eada6651SSatish Balay   /* Some Variables required in the macro */
23480c1aa95SSatish Balay   Mat          A     = baij->A;
23580c1aa95SSatish Balay   Mat_SeqBAIJ *a     = (Mat_SeqBAIJ *)(A)->data;
236b24ad042SBarry Smith   PetscInt    *aimax = a->imax, *ai = a->i, *ailen = a->ilen, *aj = a->j;
2373eda8832SBarry Smith   MatScalar   *aa = a->a;
238ac7a638eSSatish Balay 
239ac7a638eSSatish Balay   Mat          B     = baij->B;
240ac7a638eSSatish Balay   Mat_SeqBAIJ *b     = (Mat_SeqBAIJ *)(B)->data;
241b24ad042SBarry Smith   PetscInt    *bimax = b->imax, *bi = b->i, *bilen = b->ilen, *bj = b->j;
2423eda8832SBarry Smith   MatScalar   *ba = b->a;
243ac7a638eSSatish Balay 
244b24ad042SBarry Smith   PetscInt  *rp, ii, nrow, _i, rmax, N, brow, bcol;
245b24ad042SBarry Smith   PetscInt   low, high, t, ridx, cidx, bs2 = a->bs2;
2463eda8832SBarry Smith   MatScalar *ap, *bap;
24780c1aa95SSatish Balay 
248d64ed03dSBarry Smith   PetscFunctionBegin;
24957b952d6SSatish Balay   for (i = 0; i < m; i++) {
2505ef9f2a5SBarry Smith     if (im[i] < 0) continue;
2515f80ce2aSJacob Faibussowitsch     PetscCheck(im[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, im[i], mat->rmap->N - 1);
25257b952d6SSatish Balay     if (im[i] >= rstart_orig && im[i] < rend_orig) {
25357b952d6SSatish Balay       row = im[i] - rstart_orig;
25457b952d6SSatish Balay       for (j = 0; j < n; j++) {
25557b952d6SSatish Balay         if (in[j] >= cstart_orig && in[j] < cend_orig) {
25657b952d6SSatish Balay           col = in[j] - cstart_orig;
257db4deed7SKarl Rupp           if (roworiented) value = v[i * n + j];
258db4deed7SKarl Rupp           else value = v[i + j * m];
259d40312a9SBarry Smith           MatSetValues_SeqBAIJ_A_Private(row, col, value, addv, im[i], in[j]);
260f7d195e4SLawrence Mitchell         } else if (in[j] < 0) {
261f7d195e4SLawrence Mitchell           continue;
262f7d195e4SLawrence Mitchell         } else {
263f7d195e4SLawrence Mitchell           PetscCheck(in[j] < mat->cmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, in[j], mat->cmap->N - 1);
26457b952d6SSatish Balay           if (mat->was_assembled) {
26548a46eb9SPierre Jolivet             if (!baij->colmap) PetscCall(MatCreateColmap_MPIBAIJ_Private(mat));
266aa482453SBarry Smith #if defined(PETSC_USE_CTABLE)
267eec179cfSJacob Faibussowitsch             PetscCall(PetscHMapIGetWithDefault(baij->colmap, in[j] / bs + 1, 0, &col));
268bba1ac68SSatish Balay             col = col - 1;
26948e59246SSatish Balay #else
270bba1ac68SSatish Balay             col = baij->colmap[in[j] / bs] - 1;
27148e59246SSatish Balay #endif
272f4f49eeaSPierre Jolivet             if (col < 0 && !((Mat_SeqBAIJ *)baij->B->data)->nonew) {
2739566063dSJacob Faibussowitsch               PetscCall(MatDisAssemble_MPIBAIJ(mat));
2748295de27SSatish Balay               col = in[j];
2759bf004c3SSatish Balay               /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */
2769bf004c3SSatish Balay               B     = baij->B;
2779bf004c3SSatish Balay               b     = (Mat_SeqBAIJ *)(B)->data;
2789371c9d4SSatish Balay               bimax = b->imax;
2799371c9d4SSatish Balay               bi    = b->i;
2809371c9d4SSatish Balay               bilen = b->ilen;
2819371c9d4SSatish Balay               bj    = b->j;
2829bf004c3SSatish Balay               ba    = b->a;
283f7d195e4SLawrence Mitchell             } else {
284f7d195e4SLawrence Mitchell               PetscCheck(col >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", im[i], in[j]);
285f7d195e4SLawrence Mitchell               col += in[j] % bs;
286f7d195e4SLawrence Mitchell             }
2878295de27SSatish Balay           } else col = in[j];
288db4deed7SKarl Rupp           if (roworiented) value = v[i * n + j];
289db4deed7SKarl Rupp           else value = v[i + j * m];
290d40312a9SBarry Smith           MatSetValues_SeqBAIJ_B_Private(row, col, value, addv, im[i], in[j]);
2919566063dSJacob Faibussowitsch           /* PetscCall(MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv)); */
29257b952d6SSatish Balay         }
29357b952d6SSatish Balay       }
294d64ed03dSBarry Smith     } else {
2955f80ce2aSJacob Faibussowitsch       PetscCheck(!mat->nooffprocentries, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Setting off process row %" PetscInt_FMT " even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set", im[i]);
29690f02eecSBarry Smith       if (!baij->donotstash) {
2975080c13bSMatthew G Knepley         mat->assembled = PETSC_FALSE;
298ff2fd236SBarry Smith         if (roworiented) {
2999566063dSJacob Faibussowitsch           PetscCall(MatStashValuesRow_Private(&mat->stash, im[i], n, in, v + i * n, PETSC_FALSE));
300ff2fd236SBarry Smith         } else {
3019566063dSJacob Faibussowitsch           PetscCall(MatStashValuesCol_Private(&mat->stash, im[i], n, in, v + i, m, PETSC_FALSE));
30257b952d6SSatish Balay         }
30357b952d6SSatish Balay       }
30457b952d6SSatish Balay     }
30590f02eecSBarry Smith   }
3063ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
30757b952d6SSatish Balay }
30857b952d6SSatish Balay 
309d71ae5a4SJacob Faibussowitsch static inline PetscErrorCode MatSetValuesBlocked_SeqBAIJ_Inlined(Mat A, PetscInt row, PetscInt col, const PetscScalar v[], InsertMode is, PetscInt orow, PetscInt ocol)
310d71ae5a4SJacob Faibussowitsch {
311880c6e6aSBarry Smith   Mat_SeqBAIJ       *a = (Mat_SeqBAIJ *)A->data;
3128ab52850SBarry Smith   PetscInt          *rp, low, high, t, ii, jj, nrow, i, rmax, N;
313880c6e6aSBarry Smith   PetscInt          *imax = a->imax, *ai = a->i, *ailen = a->ilen;
3148ab52850SBarry Smith   PetscInt          *aj = a->j, nonew = a->nonew, bs2 = a->bs2, bs = A->rmap->bs;
315880c6e6aSBarry Smith   PetscBool          roworiented = a->roworiented;
316880c6e6aSBarry Smith   const PetscScalar *value       = v;
317880c6e6aSBarry Smith   MatScalar         *ap, *aa = a->a, *bap;
318880c6e6aSBarry Smith 
319880c6e6aSBarry Smith   PetscFunctionBegin;
320880c6e6aSBarry Smith   rp    = aj + ai[row];
321880c6e6aSBarry Smith   ap    = aa + bs2 * ai[row];
322880c6e6aSBarry Smith   rmax  = imax[row];
323880c6e6aSBarry Smith   nrow  = ailen[row];
3248ab52850SBarry Smith   value = v;
3258ab52850SBarry Smith   low   = 0;
3268ab52850SBarry Smith   high  = nrow;
327880c6e6aSBarry Smith   while (high - low > 7) {
328880c6e6aSBarry Smith     t = (low + high) / 2;
329880c6e6aSBarry Smith     if (rp[t] > col) high = t;
330880c6e6aSBarry Smith     else low = t;
331880c6e6aSBarry Smith   }
332880c6e6aSBarry Smith   for (i = low; i < high; i++) {
333880c6e6aSBarry Smith     if (rp[i] > col) break;
334880c6e6aSBarry Smith     if (rp[i] == col) {
335880c6e6aSBarry Smith       bap = ap + bs2 * i;
336880c6e6aSBarry Smith       if (roworiented) {
337880c6e6aSBarry Smith         if (is == ADD_VALUES) {
3388ab52850SBarry Smith           for (ii = 0; ii < bs; ii++) {
339ad540459SPierre Jolivet             for (jj = ii; jj < bs2; jj += bs) bap[jj] += *value++;
340880c6e6aSBarry Smith           }
341880c6e6aSBarry Smith         } else {
3428ab52850SBarry Smith           for (ii = 0; ii < bs; ii++) {
343ad540459SPierre Jolivet             for (jj = ii; jj < bs2; jj += bs) bap[jj] = *value++;
344880c6e6aSBarry Smith           }
345880c6e6aSBarry Smith         }
346880c6e6aSBarry Smith       } else {
347880c6e6aSBarry Smith         if (is == ADD_VALUES) {
3488ab52850SBarry Smith           for (ii = 0; ii < bs; ii++, value += bs) {
349ad540459SPierre Jolivet             for (jj = 0; jj < bs; jj++) bap[jj] += value[jj];
350880c6e6aSBarry Smith             bap += bs;
351880c6e6aSBarry Smith           }
352880c6e6aSBarry Smith         } else {
3538ab52850SBarry Smith           for (ii = 0; ii < bs; ii++, value += bs) {
354ad540459SPierre Jolivet             for (jj = 0; jj < bs; jj++) bap[jj] = value[jj];
355880c6e6aSBarry Smith             bap += bs;
356880c6e6aSBarry Smith           }
357880c6e6aSBarry Smith         }
358880c6e6aSBarry Smith       }
359880c6e6aSBarry Smith       goto noinsert2;
360880c6e6aSBarry Smith     }
361880c6e6aSBarry Smith   }
362880c6e6aSBarry Smith   if (nonew == 1) goto noinsert2;
3635f80ce2aSJacob Faibussowitsch   PetscCheck(nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new global block indexed nonzero block (%" PetscInt_FMT ", %" PetscInt_FMT ") in the matrix", orow, ocol);
364880c6e6aSBarry Smith   MatSeqXAIJReallocateAIJ(A, a->mbs, bs2, nrow, row, col, rmax, aa, ai, aj, rp, ap, imax, nonew, MatScalar);
3659371c9d4SSatish Balay   N = nrow++ - 1;
3669371c9d4SSatish Balay   high++;
367880c6e6aSBarry Smith   /* shift up all the later entries in this row */
3689566063dSJacob Faibussowitsch   PetscCall(PetscArraymove(rp + i + 1, rp + i, N - i + 1));
3699566063dSJacob Faibussowitsch   PetscCall(PetscArraymove(ap + bs2 * (i + 1), ap + bs2 * i, bs2 * (N - i + 1)));
370880c6e6aSBarry Smith   rp[i] = col;
371880c6e6aSBarry Smith   bap   = ap + bs2 * i;
372880c6e6aSBarry Smith   if (roworiented) {
3738ab52850SBarry Smith     for (ii = 0; ii < bs; ii++) {
374ad540459SPierre Jolivet       for (jj = ii; jj < bs2; jj += bs) bap[jj] = *value++;
375880c6e6aSBarry Smith     }
376880c6e6aSBarry Smith   } else {
3778ab52850SBarry Smith     for (ii = 0; ii < bs; ii++) {
378ad540459SPierre Jolivet       for (jj = 0; jj < bs; jj++) *bap++ = *value++;
379880c6e6aSBarry Smith     }
380880c6e6aSBarry Smith   }
381880c6e6aSBarry Smith noinsert2:;
382880c6e6aSBarry Smith   ailen[row] = nrow;
3833ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
384880c6e6aSBarry Smith }
385880c6e6aSBarry Smith 
3868ab52850SBarry Smith /*
3878ab52850SBarry Smith     This routine should be optimized so that the block copy at ** Here a copy is required ** below is not needed
3888ab52850SBarry Smith     by passing additional stride information into the MatSetValuesBlocked_SeqBAIJ_Inlined() routine
3898ab52850SBarry Smith */
39066976f2fSJacob Faibussowitsch static PetscErrorCode MatSetValuesBlocked_MPIBAIJ(Mat mat, PetscInt m, const PetscInt im[], PetscInt n, const PetscInt in[], const PetscScalar v[], InsertMode addv)
391d71ae5a4SJacob Faibussowitsch {
392ab26458aSBarry Smith   Mat_MPIBAIJ       *baij = (Mat_MPIBAIJ *)mat->data;
393dd6ea824SBarry Smith   const PetscScalar *value;
394f15d580aSBarry Smith   MatScalar         *barray      = baij->barray;
395ace3abfcSBarry Smith   PetscBool          roworiented = baij->roworiented;
396899cda47SBarry Smith   PetscInt           i, j, ii, jj, row, col, rstart = baij->rstartbs;
397899cda47SBarry Smith   PetscInt           rend = baij->rendbs, cstart = baij->cstartbs, stepval;
398d0f46423SBarry Smith   PetscInt           cend = baij->cendbs, bs = mat->rmap->bs, bs2 = baij->bs2;
399ab26458aSBarry Smith 
400b16ae2b1SBarry Smith   PetscFunctionBegin;
40130793edcSSatish Balay   if (!barray) {
4029566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(bs2, &barray));
40382502324SSatish Balay     baij->barray = barray;
40430793edcSSatish Balay   }
40530793edcSSatish Balay 
40626fbe8dcSKarl Rupp   if (roworiented) stepval = (n - 1) * bs;
40726fbe8dcSKarl Rupp   else stepval = (m - 1) * bs;
40826fbe8dcSKarl Rupp 
409ab26458aSBarry Smith   for (i = 0; i < m; i++) {
4105ef9f2a5SBarry Smith     if (im[i] < 0) continue;
4116bdcaf15SBarry Smith     PetscCheck(im[i] < baij->Mbs, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Block indexed row too large %" PetscInt_FMT " max %" PetscInt_FMT, im[i], baij->Mbs - 1);
412ab26458aSBarry Smith     if (im[i] >= rstart && im[i] < rend) {
413ab26458aSBarry Smith       row = im[i] - rstart;
414ab26458aSBarry Smith       for (j = 0; j < n; j++) {
41515b57d14SSatish Balay         /* If NumCol = 1 then a copy is not required */
41615b57d14SSatish Balay         if ((roworiented) && (n == 1)) {
417f15d580aSBarry Smith           barray = (MatScalar *)v + i * bs2;
41815b57d14SSatish Balay         } else if ((!roworiented) && (m == 1)) {
419f15d580aSBarry Smith           barray = (MatScalar *)v + j * bs2;
42015b57d14SSatish Balay         } else { /* Here a copy is required */
421ab26458aSBarry Smith           if (roworiented) {
42253ef36baSBarry Smith             value = v + (i * (stepval + bs) + j) * bs;
423ab26458aSBarry Smith           } else {
42453ef36baSBarry Smith             value = v + (j * (stepval + bs) + i) * bs;
425abef11f7SSatish Balay           }
42653ef36baSBarry Smith           for (ii = 0; ii < bs; ii++, value += bs + stepval) {
42726fbe8dcSKarl Rupp             for (jj = 0; jj < bs; jj++) barray[jj] = value[jj];
42853ef36baSBarry Smith             barray += bs;
42947513183SBarry Smith           }
43030793edcSSatish Balay           barray -= bs2;
43115b57d14SSatish Balay         }
432abef11f7SSatish Balay 
433abef11f7SSatish Balay         if (in[j] >= cstart && in[j] < cend) {
434abef11f7SSatish Balay           col = in[j] - cstart;
4359566063dSJacob Faibussowitsch           PetscCall(MatSetValuesBlocked_SeqBAIJ_Inlined(baij->A, row, col, barray, addv, im[i], in[j]));
436f7d195e4SLawrence Mitchell         } else if (in[j] < 0) {
437f7d195e4SLawrence Mitchell           continue;
438f7d195e4SLawrence Mitchell         } else {
439f7d195e4SLawrence Mitchell           PetscCheck(in[j] < baij->Nbs, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Block indexed column too large %" PetscInt_FMT " max %" PetscInt_FMT, in[j], baij->Nbs - 1);
440ab26458aSBarry Smith           if (mat->was_assembled) {
44148a46eb9SPierre Jolivet             if (!baij->colmap) PetscCall(MatCreateColmap_MPIBAIJ_Private(mat));
442a5eb4965SSatish Balay 
443aa482453SBarry Smith #if defined(PETSC_USE_CTABLE)
444eec179cfSJacob Faibussowitsch             PetscCall(PetscHMapIGetWithDefault(baij->colmap, in[j] + 1, 0, &col));
445*b758ae8cSBarry Smith             col = col < 1 ? -1 : (col - 1) / bs;
44648e59246SSatish Balay #else
447*b758ae8cSBarry Smith             col = baij->colmap[in[j]] < 1 ? -1 : (baij->colmap[in[j]] - 1) / bs;
44848e59246SSatish Balay #endif
449f4f49eeaSPierre Jolivet             if (col < 0 && !((Mat_SeqBAIJ *)baij->B->data)->nonew) {
4509566063dSJacob Faibussowitsch               PetscCall(MatDisAssemble_MPIBAIJ(mat));
451ab26458aSBarry Smith               col = in[j];
4525f80ce2aSJacob Faibussowitsch             } else PetscCheck(col >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new blocked indexed nonzero block (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", im[i], in[j]);
453db4deed7SKarl Rupp           } else col = in[j];
4549566063dSJacob Faibussowitsch           PetscCall(MatSetValuesBlocked_SeqBAIJ_Inlined(baij->B, row, col, barray, addv, im[i], in[j]));
455ab26458aSBarry Smith         }
456ab26458aSBarry Smith       }
457d64ed03dSBarry Smith     } else {
4585f80ce2aSJacob Faibussowitsch       PetscCheck(!mat->nooffprocentries, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Setting off process block indexed row %" PetscInt_FMT " even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set", im[i]);
459ab26458aSBarry Smith       if (!baij->donotstash) {
460ff2fd236SBarry Smith         if (roworiented) {
4619566063dSJacob Faibussowitsch           PetscCall(MatStashValuesRowBlocked_Private(&mat->bstash, im[i], n, in, v, m, n, i));
462ff2fd236SBarry Smith         } else {
4639566063dSJacob Faibussowitsch           PetscCall(MatStashValuesColBlocked_Private(&mat->bstash, im[i], n, in, v, m, n, i));
464ff2fd236SBarry Smith         }
465abef11f7SSatish Balay       }
466ab26458aSBarry Smith     }
467ab26458aSBarry Smith   }
4683ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
469ab26458aSBarry Smith }
4706fa18ffdSBarry Smith 
4710bdbc534SSatish Balay #define HASH_KEY             0.6180339887
472b24ad042SBarry Smith #define HASH(size, key, tmp) (tmp = (key) * HASH_KEY, (PetscInt)((size) * (tmp - (PetscInt)tmp)))
473b24ad042SBarry Smith /* #define HASH(size,key) ((PetscInt)((size)*fmod(((key)*HASH_KEY),1))) */
474b24ad042SBarry Smith /* #define HASH(size,key,tmp) ((PetscInt)((size)*fmod(((key)*HASH_KEY),1))) */
47566976f2fSJacob Faibussowitsch static PetscErrorCode MatSetValues_MPIBAIJ_HT(Mat mat, PetscInt m, const PetscInt im[], PetscInt n, const PetscInt in[], const PetscScalar v[], InsertMode addv)
476d71ae5a4SJacob Faibussowitsch {
4770bdbc534SSatish Balay   Mat_MPIBAIJ *baij        = (Mat_MPIBAIJ *)mat->data;
478ace3abfcSBarry Smith   PetscBool    roworiented = baij->roworiented;
479b24ad042SBarry Smith   PetscInt     i, j, row, col;
480d0f46423SBarry Smith   PetscInt     rstart_orig = mat->rmap->rstart;
481d0f46423SBarry Smith   PetscInt     rend_orig = mat->rmap->rend, Nbs = baij->Nbs;
482d0f46423SBarry Smith   PetscInt     h1, key, size = baij->ht_size, bs = mat->rmap->bs, *HT = baij->ht, idx;
483329f5518SBarry Smith   PetscReal    tmp;
4843eda8832SBarry Smith   MatScalar  **HD       = baij->hd, value;
485b24ad042SBarry Smith   PetscInt     total_ct = baij->ht_total_ct, insert_ct = baij->ht_insert_ct;
4860bdbc534SSatish Balay 
4870bdbc534SSatish Balay   PetscFunctionBegin;
4880bdbc534SSatish Balay   for (i = 0; i < m; i++) {
48976bd3646SJed Brown     if (PetscDefined(USE_DEBUG)) {
4905f80ce2aSJacob Faibussowitsch       PetscCheck(im[i] >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Negative row");
4915f80ce2aSJacob Faibussowitsch       PetscCheck(im[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, im[i], mat->rmap->N - 1);
49276bd3646SJed Brown     }
4930bdbc534SSatish Balay     row = im[i];
494c2760754SSatish Balay     if (row >= rstart_orig && row < rend_orig) {
4950bdbc534SSatish Balay       for (j = 0; j < n; j++) {
4960bdbc534SSatish Balay         col = in[j];
497db4deed7SKarl Rupp         if (roworiented) value = v[i * n + j];
498db4deed7SKarl Rupp         else value = v[i + j * m];
499b24ad042SBarry Smith         /* Look up PetscInto the Hash Table */
500c2760754SSatish Balay         key = (row / bs) * Nbs + (col / bs) + 1;
501c2760754SSatish Balay         h1  = HASH(size, key, tmp);
5020bdbc534SSatish Balay 
503c2760754SSatish Balay         idx = h1;
50476bd3646SJed Brown         if (PetscDefined(USE_DEBUG)) {
505187ce0cbSSatish Balay           insert_ct++;
506187ce0cbSSatish Balay           total_ct++;
507187ce0cbSSatish Balay           if (HT[idx] != key) {
508fbccb6d4SPierre Jolivet             for (idx = h1; (idx < size) && (HT[idx] != key); idx++, total_ct++);
509187ce0cbSSatish Balay             if (idx == size) {
510fbccb6d4SPierre Jolivet               for (idx = 0; (idx < h1) && (HT[idx] != key); idx++, total_ct++);
5115f80ce2aSJacob Faibussowitsch               PetscCheck(idx != h1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "(%" PetscInt_FMT ",%" PetscInt_FMT ") has no entry in the hash table", row, col);
512187ce0cbSSatish Balay             }
513187ce0cbSSatish Balay           }
51476bd3646SJed Brown         } else if (HT[idx] != key) {
515fbccb6d4SPierre Jolivet           for (idx = h1; (idx < size) && (HT[idx] != key); idx++);
516c2760754SSatish Balay           if (idx == size) {
517fbccb6d4SPierre Jolivet             for (idx = 0; (idx < h1) && (HT[idx] != key); idx++);
5185f80ce2aSJacob Faibussowitsch             PetscCheck(idx != h1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "(%" PetscInt_FMT ",%" PetscInt_FMT ") has no entry in the hash table", row, col);
519c2760754SSatish Balay           }
520c2760754SSatish Balay         }
521c2760754SSatish Balay         /* A HASH table entry is found, so insert the values at the correct address */
522c2760754SSatish Balay         if (addv == ADD_VALUES) *(HD[idx] + (col % bs) * bs + (row % bs)) += value;
523c2760754SSatish Balay         else *(HD[idx] + (col % bs) * bs + (row % bs)) = value;
5240bdbc534SSatish Balay       }
52526fbe8dcSKarl Rupp     } else if (!baij->donotstash) {
526ff2fd236SBarry Smith       if (roworiented) {
5279566063dSJacob Faibussowitsch         PetscCall(MatStashValuesRow_Private(&mat->stash, im[i], n, in, v + i * n, PETSC_FALSE));
528ff2fd236SBarry Smith       } else {
5299566063dSJacob Faibussowitsch         PetscCall(MatStashValuesCol_Private(&mat->stash, im[i], n, in, v + i, m, PETSC_FALSE));
5300bdbc534SSatish Balay       }
5310bdbc534SSatish Balay     }
5320bdbc534SSatish Balay   }
53376bd3646SJed Brown   if (PetscDefined(USE_DEBUG)) {
534abf3b562SBarry Smith     baij->ht_total_ct += total_ct;
535abf3b562SBarry Smith     baij->ht_insert_ct += insert_ct;
53676bd3646SJed Brown   }
5373ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
5380bdbc534SSatish Balay }
5390bdbc534SSatish Balay 
54066976f2fSJacob Faibussowitsch static PetscErrorCode MatSetValuesBlocked_MPIBAIJ_HT(Mat mat, PetscInt m, const PetscInt im[], PetscInt n, const PetscInt in[], const PetscScalar v[], InsertMode addv)
541d71ae5a4SJacob Faibussowitsch {
5420bdbc534SSatish Balay   Mat_MPIBAIJ       *baij        = (Mat_MPIBAIJ *)mat->data;
543ace3abfcSBarry Smith   PetscBool          roworiented = baij->roworiented;
544b24ad042SBarry Smith   PetscInt           i, j, ii, jj, row, col;
545899cda47SBarry Smith   PetscInt           rstart = baij->rstartbs;
546d0f46423SBarry Smith   PetscInt           rend = mat->rmap->rend, stepval, bs = mat->rmap->bs, bs2 = baij->bs2, nbs2 = n * bs2;
547b24ad042SBarry Smith   PetscInt           h1, key, size = baij->ht_size, idx, *HT = baij->ht, Nbs = baij->Nbs;
548329f5518SBarry Smith   PetscReal          tmp;
5493eda8832SBarry Smith   MatScalar        **HD = baij->hd, *baij_a;
550dd6ea824SBarry Smith   const PetscScalar *v_t, *value;
551b24ad042SBarry Smith   PetscInt           total_ct = baij->ht_total_ct, insert_ct = baij->ht_insert_ct;
5520bdbc534SSatish Balay 
553d0a41580SSatish Balay   PetscFunctionBegin;
55426fbe8dcSKarl Rupp   if (roworiented) stepval = (n - 1) * bs;
55526fbe8dcSKarl Rupp   else stepval = (m - 1) * bs;
55626fbe8dcSKarl Rupp 
5570bdbc534SSatish Balay   for (i = 0; i < m; i++) {
55876bd3646SJed Brown     if (PetscDefined(USE_DEBUG)) {
5595f80ce2aSJacob Faibussowitsch       PetscCheck(im[i] >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Negative row: %" PetscInt_FMT, im[i]);
5605f80ce2aSJacob Faibussowitsch       PetscCheck(im[i] < baij->Mbs, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, im[i], baij->Mbs - 1);
56176bd3646SJed Brown     }
5620bdbc534SSatish Balay     row = im[i];
563ab715e2cSSatish Balay     v_t = v + i * nbs2;
564c2760754SSatish Balay     if (row >= rstart && row < rend) {
5650bdbc534SSatish Balay       for (j = 0; j < n; j++) {
5660bdbc534SSatish Balay         col = in[j];
5670bdbc534SSatish Balay 
5680bdbc534SSatish Balay         /* Look up into the Hash Table */
569c2760754SSatish Balay         key = row * Nbs + col + 1;
570c2760754SSatish Balay         h1  = HASH(size, key, tmp);
5710bdbc534SSatish Balay 
572c2760754SSatish Balay         idx = h1;
57376bd3646SJed Brown         if (PetscDefined(USE_DEBUG)) {
574187ce0cbSSatish Balay           total_ct++;
575187ce0cbSSatish Balay           insert_ct++;
576187ce0cbSSatish Balay           if (HT[idx] != key) {
577fbccb6d4SPierre Jolivet             for (idx = h1; (idx < size) && (HT[idx] != key); idx++, total_ct++);
578187ce0cbSSatish Balay             if (idx == size) {
579fbccb6d4SPierre Jolivet               for (idx = 0; (idx < h1) && (HT[idx] != key); idx++, total_ct++);
5805f80ce2aSJacob Faibussowitsch               PetscCheck(idx != h1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "(%" PetscInt_FMT ",%" PetscInt_FMT ") has no entry in the hash table", row, col);
581187ce0cbSSatish Balay             }
582187ce0cbSSatish Balay           }
58376bd3646SJed Brown         } else if (HT[idx] != key) {
584fbccb6d4SPierre Jolivet           for (idx = h1; (idx < size) && (HT[idx] != key); idx++);
585c2760754SSatish Balay           if (idx == size) {
586fbccb6d4SPierre Jolivet             for (idx = 0; (idx < h1) && (HT[idx] != key); idx++);
5875f80ce2aSJacob Faibussowitsch             PetscCheck(idx != h1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "(%" PetscInt_FMT ",%" PetscInt_FMT ") has no entry in the hash table", row, col);
588c2760754SSatish Balay           }
589c2760754SSatish Balay         }
590c2760754SSatish Balay         baij_a = HD[idx];
5910bdbc534SSatish Balay         if (roworiented) {
592c2760754SSatish Balay           /*value = v + i*(stepval+bs)*bs + j*bs;*/
593187ce0cbSSatish Balay           /* value = v + (i*(stepval+bs)+j)*bs; */
594187ce0cbSSatish Balay           value = v_t;
595187ce0cbSSatish Balay           v_t += bs;
596fef45726SSatish Balay           if (addv == ADD_VALUES) {
597c2760754SSatish Balay             for (ii = 0; ii < bs; ii++, value += stepval) {
598ad540459SPierre Jolivet               for (jj = ii; jj < bs2; jj += bs) baij_a[jj] += *value++;
599b4cc0f5aSSatish Balay             }
600fef45726SSatish Balay           } else {
601c2760754SSatish Balay             for (ii = 0; ii < bs; ii++, value += stepval) {
602ad540459SPierre Jolivet               for (jj = ii; jj < bs2; jj += bs) baij_a[jj] = *value++;
603fef45726SSatish Balay             }
604fef45726SSatish Balay           }
6050bdbc534SSatish Balay         } else {
6060bdbc534SSatish Balay           value = v + j * (stepval + bs) * bs + i * bs;
607fef45726SSatish Balay           if (addv == ADD_VALUES) {
608b4cc0f5aSSatish Balay             for (ii = 0; ii < bs; ii++, value += stepval, baij_a += bs) {
609ad540459SPierre Jolivet               for (jj = 0; jj < bs; jj++) baij_a[jj] += *value++;
610fef45726SSatish Balay             }
611fef45726SSatish Balay           } else {
612fef45726SSatish Balay             for (ii = 0; ii < bs; ii++, value += stepval, baij_a += bs) {
613ad540459SPierre Jolivet               for (jj = 0; jj < bs; jj++) baij_a[jj] = *value++;
614b4cc0f5aSSatish Balay             }
6150bdbc534SSatish Balay           }
6160bdbc534SSatish Balay         }
6170bdbc534SSatish Balay       }
6180bdbc534SSatish Balay     } else {
6190bdbc534SSatish Balay       if (!baij->donotstash) {
6200bdbc534SSatish Balay         if (roworiented) {
6219566063dSJacob Faibussowitsch           PetscCall(MatStashValuesRowBlocked_Private(&mat->bstash, im[i], n, in, v, m, n, i));
6220bdbc534SSatish Balay         } else {
6239566063dSJacob Faibussowitsch           PetscCall(MatStashValuesColBlocked_Private(&mat->bstash, im[i], n, in, v, m, n, i));
6240bdbc534SSatish Balay         }
6250bdbc534SSatish Balay       }
6260bdbc534SSatish Balay     }
6270bdbc534SSatish Balay   }
62876bd3646SJed Brown   if (PetscDefined(USE_DEBUG)) {
629abf3b562SBarry Smith     baij->ht_total_ct += total_ct;
630abf3b562SBarry Smith     baij->ht_insert_ct += insert_ct;
63176bd3646SJed Brown   }
6323ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6330bdbc534SSatish Balay }
634133cdb44SSatish Balay 
63566976f2fSJacob Faibussowitsch static PetscErrorCode MatGetValues_MPIBAIJ(Mat mat, PetscInt m, const PetscInt idxm[], PetscInt n, const PetscInt idxn[], PetscScalar v[])
636d71ae5a4SJacob Faibussowitsch {
637d6de1c52SSatish Balay   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data;
638d0f46423SBarry Smith   PetscInt     bs = mat->rmap->bs, i, j, bsrstart = mat->rmap->rstart, bsrend = mat->rmap->rend;
639d0f46423SBarry Smith   PetscInt     bscstart = mat->cmap->rstart, bscend = mat->cmap->rend, row, col, data;
640d6de1c52SSatish Balay 
641133cdb44SSatish Balay   PetscFunctionBegin;
642d6de1c52SSatish Balay   for (i = 0; i < m; i++) {
64354c59aa7SJacob Faibussowitsch     if (idxm[i] < 0) continue; /* negative row */
64454c59aa7SJacob Faibussowitsch     PetscCheck(idxm[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, idxm[i], mat->rmap->N - 1);
645d6de1c52SSatish Balay     if (idxm[i] >= bsrstart && idxm[i] < bsrend) {
646d6de1c52SSatish Balay       row = idxm[i] - bsrstart;
647d6de1c52SSatish Balay       for (j = 0; j < n; j++) {
64854c59aa7SJacob Faibussowitsch         if (idxn[j] < 0) continue; /* negative column */
64954c59aa7SJacob Faibussowitsch         PetscCheck(idxn[j] < mat->cmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, idxn[j], mat->cmap->N - 1);
650d6de1c52SSatish Balay         if (idxn[j] >= bscstart && idxn[j] < bscend) {
651d6de1c52SSatish Balay           col = idxn[j] - bscstart;
6529566063dSJacob Faibussowitsch           PetscCall(MatGetValues_SeqBAIJ(baij->A, 1, &row, 1, &col, v + i * n + j));
653d64ed03dSBarry Smith         } else {
65448a46eb9SPierre Jolivet           if (!baij->colmap) PetscCall(MatCreateColmap_MPIBAIJ_Private(mat));
655aa482453SBarry Smith #if defined(PETSC_USE_CTABLE)
656eec179cfSJacob Faibussowitsch           PetscCall(PetscHMapIGetWithDefault(baij->colmap, idxn[j] / bs + 1, 0, &data));
657fa46199cSSatish Balay           data--;
65848e59246SSatish Balay #else
65948e59246SSatish Balay           data = baij->colmap[idxn[j] / bs] - 1;
66048e59246SSatish Balay #endif
66148e59246SSatish Balay           if ((data < 0) || (baij->garray[data / bs] != idxn[j] / bs)) *(v + i * n + j) = 0.0;
662d9d09a02SSatish Balay           else {
66348e59246SSatish Balay             col = data + idxn[j] % bs;
6649566063dSJacob Faibussowitsch             PetscCall(MatGetValues_SeqBAIJ(baij->B, 1, &row, 1, &col, v + i * n + j));
665d6de1c52SSatish Balay           }
666d6de1c52SSatish Balay         }
667d6de1c52SSatish Balay       }
668f23aa3ddSBarry Smith     } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "Only local values currently supported");
669d6de1c52SSatish Balay   }
6703ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
671d6de1c52SSatish Balay }
672d6de1c52SSatish Balay 
67366976f2fSJacob Faibussowitsch static PetscErrorCode MatNorm_MPIBAIJ(Mat mat, NormType type, PetscReal *nrm)
674d71ae5a4SJacob Faibussowitsch {
675d6de1c52SSatish Balay   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data;
676d6de1c52SSatish Balay   Mat_SeqBAIJ *amat = (Mat_SeqBAIJ *)baij->A->data, *bmat = (Mat_SeqBAIJ *)baij->B->data;
677d0f46423SBarry Smith   PetscInt     i, j, bs2 = baij->bs2, bs = baij->A->rmap->bs, nz, row, col;
678329f5518SBarry Smith   PetscReal    sum = 0.0;
6793eda8832SBarry Smith   MatScalar   *v;
680d6de1c52SSatish Balay 
681d64ed03dSBarry Smith   PetscFunctionBegin;
682d6de1c52SSatish Balay   if (baij->size == 1) {
6839566063dSJacob Faibussowitsch     PetscCall(MatNorm(baij->A, type, nrm));
684d6de1c52SSatish Balay   } else {
685d6de1c52SSatish Balay     if (type == NORM_FROBENIUS) {
686d6de1c52SSatish Balay       v  = amat->a;
6878a62d963SHong Zhang       nz = amat->nz * bs2;
6888a62d963SHong Zhang       for (i = 0; i < nz; i++) {
6899371c9d4SSatish Balay         sum += PetscRealPart(PetscConj(*v) * (*v));
6909371c9d4SSatish Balay         v++;
691d6de1c52SSatish Balay       }
692d6de1c52SSatish Balay       v  = bmat->a;
6938a62d963SHong Zhang       nz = bmat->nz * bs2;
6948a62d963SHong Zhang       for (i = 0; i < nz; i++) {
6959371c9d4SSatish Balay         sum += PetscRealPart(PetscConj(*v) * (*v));
6969371c9d4SSatish Balay         v++;
697d6de1c52SSatish Balay       }
6981c2dc1cbSBarry Smith       PetscCall(MPIU_Allreduce(&sum, nrm, 1, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)mat)));
6998f1a2a5eSBarry Smith       *nrm = PetscSqrtReal(*nrm);
7008a62d963SHong Zhang     } else if (type == NORM_1) { /* max column sum */
7018a62d963SHong Zhang       PetscReal *tmp, *tmp2;
702899cda47SBarry Smith       PetscInt  *jj, *garray = baij->garray, cstart = baij->rstartbs;
7039566063dSJacob Faibussowitsch       PetscCall(PetscCalloc1(mat->cmap->N, &tmp));
7049566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(mat->cmap->N, &tmp2));
7059371c9d4SSatish Balay       v  = amat->a;
7069371c9d4SSatish Balay       jj = amat->j;
7078a62d963SHong Zhang       for (i = 0; i < amat->nz; i++) {
7088a62d963SHong Zhang         for (j = 0; j < bs; j++) {
7098a62d963SHong Zhang           col = bs * (cstart + *jj) + j; /* column index */
7108a62d963SHong Zhang           for (row = 0; row < bs; row++) {
7119371c9d4SSatish Balay             tmp[col] += PetscAbsScalar(*v);
7129371c9d4SSatish Balay             v++;
7138a62d963SHong Zhang           }
7148a62d963SHong Zhang         }
7158a62d963SHong Zhang         jj++;
7168a62d963SHong Zhang       }
7179371c9d4SSatish Balay       v  = bmat->a;
7189371c9d4SSatish Balay       jj = bmat->j;
7198a62d963SHong Zhang       for (i = 0; i < bmat->nz; i++) {
7208a62d963SHong Zhang         for (j = 0; j < bs; j++) {
7218a62d963SHong Zhang           col = bs * garray[*jj] + j;
7228a62d963SHong Zhang           for (row = 0; row < bs; row++) {
7239371c9d4SSatish Balay             tmp[col] += PetscAbsScalar(*v);
7249371c9d4SSatish Balay             v++;
7258a62d963SHong Zhang           }
7268a62d963SHong Zhang         }
7278a62d963SHong Zhang         jj++;
7288a62d963SHong Zhang       }
7291c2dc1cbSBarry Smith       PetscCall(MPIU_Allreduce(tmp, tmp2, mat->cmap->N, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)mat)));
7308a62d963SHong Zhang       *nrm = 0.0;
731d0f46423SBarry Smith       for (j = 0; j < mat->cmap->N; j++) {
7328a62d963SHong Zhang         if (tmp2[j] > *nrm) *nrm = tmp2[j];
7338a62d963SHong Zhang       }
7349566063dSJacob Faibussowitsch       PetscCall(PetscFree(tmp));
7359566063dSJacob Faibussowitsch       PetscCall(PetscFree(tmp2));
7368a62d963SHong Zhang     } else if (type == NORM_INFINITY) { /* max row sum */
737577dd1f9SKris Buschelman       PetscReal *sums;
7389566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(bs, &sums));
7398a62d963SHong Zhang       sum = 0.0;
7408a62d963SHong Zhang       for (j = 0; j < amat->mbs; j++) {
7418a62d963SHong Zhang         for (row = 0; row < bs; row++) sums[row] = 0.0;
7428a62d963SHong Zhang         v  = amat->a + bs2 * amat->i[j];
7438a62d963SHong Zhang         nz = amat->i[j + 1] - amat->i[j];
7448a62d963SHong Zhang         for (i = 0; i < nz; i++) {
7458a62d963SHong Zhang           for (col = 0; col < bs; col++) {
7468a62d963SHong Zhang             for (row = 0; row < bs; row++) {
7479371c9d4SSatish Balay               sums[row] += PetscAbsScalar(*v);
7489371c9d4SSatish Balay               v++;
7498a62d963SHong Zhang             }
7508a62d963SHong Zhang           }
7518a62d963SHong Zhang         }
7528a62d963SHong Zhang         v  = bmat->a + bs2 * bmat->i[j];
7538a62d963SHong Zhang         nz = bmat->i[j + 1] - bmat->i[j];
7548a62d963SHong Zhang         for (i = 0; i < nz; i++) {
7558a62d963SHong Zhang           for (col = 0; col < bs; col++) {
7568a62d963SHong Zhang             for (row = 0; row < bs; row++) {
7579371c9d4SSatish Balay               sums[row] += PetscAbsScalar(*v);
7589371c9d4SSatish Balay               v++;
7598a62d963SHong Zhang             }
7608a62d963SHong Zhang           }
7618a62d963SHong Zhang         }
7628a62d963SHong Zhang         for (row = 0; row < bs; row++) {
7638a62d963SHong Zhang           if (sums[row] > sum) sum = sums[row];
7648a62d963SHong Zhang         }
7658a62d963SHong Zhang       }
7661c2dc1cbSBarry Smith       PetscCall(MPIU_Allreduce(&sum, nrm, 1, MPIU_REAL, MPIU_MAX, PetscObjectComm((PetscObject)mat)));
7679566063dSJacob Faibussowitsch       PetscCall(PetscFree(sums));
768ce94432eSBarry Smith     } else SETERRQ(PetscObjectComm((PetscObject)mat), PETSC_ERR_SUP, "No support for this norm yet");
769d64ed03dSBarry Smith   }
7703ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
771d6de1c52SSatish Balay }
77257b952d6SSatish Balay 
773fef45726SSatish Balay /*
774fef45726SSatish Balay   Creates the hash table, and sets the table
775fef45726SSatish Balay   This table is created only once.
776fef45726SSatish Balay   If new entried need to be added to the matrix
777fef45726SSatish Balay   then the hash table has to be destroyed and
778fef45726SSatish Balay   recreated.
779fef45726SSatish Balay */
78066976f2fSJacob Faibussowitsch static PetscErrorCode MatCreateHashTable_MPIBAIJ_Private(Mat mat, PetscReal factor)
781d71ae5a4SJacob Faibussowitsch {
782596b8d2eSBarry Smith   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data;
783596b8d2eSBarry Smith   Mat          A = baij->A, B = baij->B;
784596b8d2eSBarry Smith   Mat_SeqBAIJ *a = (Mat_SeqBAIJ *)A->data, *b = (Mat_SeqBAIJ *)B->data;
785b24ad042SBarry Smith   PetscInt     i, j, k, nz = a->nz + b->nz, h1, *ai = a->i, *aj = a->j, *bi = b->i, *bj = b->j;
786fca92195SBarry Smith   PetscInt     ht_size, bs2 = baij->bs2, rstart = baij->rstartbs;
787899cda47SBarry Smith   PetscInt     cstart = baij->cstartbs, *garray = baij->garray, row, col, Nbs = baij->Nbs;
788b24ad042SBarry Smith   PetscInt    *HT, key;
7893eda8832SBarry Smith   MatScalar  **HD;
790329f5518SBarry Smith   PetscReal    tmp;
7916cf91177SBarry Smith #if defined(PETSC_USE_INFO)
792b24ad042SBarry Smith   PetscInt ct = 0, max = 0;
7934a15367fSSatish Balay #endif
794fef45726SSatish Balay 
795d64ed03dSBarry Smith   PetscFunctionBegin;
7963ba16761SJacob Faibussowitsch   if (baij->ht) PetscFunctionReturn(PETSC_SUCCESS);
797fef45726SSatish Balay 
798fca92195SBarry Smith   baij->ht_size = (PetscInt)(factor * nz);
799fca92195SBarry Smith   ht_size       = baij->ht_size;
8000bdbc534SSatish Balay 
801fef45726SSatish Balay   /* Allocate Memory for Hash Table */
8029566063dSJacob Faibussowitsch   PetscCall(PetscCalloc2(ht_size, &baij->hd, ht_size, &baij->ht));
803b9e4cc15SSatish Balay   HD = baij->hd;
804a07cd24cSSatish Balay   HT = baij->ht;
805b9e4cc15SSatish Balay 
806596b8d2eSBarry Smith   /* Loop Over A */
8070bdbc534SSatish Balay   for (i = 0; i < a->mbs; i++) {
808596b8d2eSBarry Smith     for (j = ai[i]; j < ai[i + 1]; j++) {
8090bdbc534SSatish Balay       row = i + rstart;
8100bdbc534SSatish Balay       col = aj[j] + cstart;
811596b8d2eSBarry Smith 
812187ce0cbSSatish Balay       key = row * Nbs + col + 1;
813fca92195SBarry Smith       h1  = HASH(ht_size, key, tmp);
814fca92195SBarry Smith       for (k = 0; k < ht_size; k++) {
815fca92195SBarry Smith         if (!HT[(h1 + k) % ht_size]) {
816fca92195SBarry Smith           HT[(h1 + k) % ht_size] = key;
817fca92195SBarry Smith           HD[(h1 + k) % ht_size] = a->a + j * bs2;
818596b8d2eSBarry Smith           break;
8196cf91177SBarry Smith #if defined(PETSC_USE_INFO)
820187ce0cbSSatish Balay         } else {
821187ce0cbSSatish Balay           ct++;
822187ce0cbSSatish Balay #endif
823596b8d2eSBarry Smith         }
824187ce0cbSSatish Balay       }
8256cf91177SBarry Smith #if defined(PETSC_USE_INFO)
826187ce0cbSSatish Balay       if (k > max) max = k;
827187ce0cbSSatish Balay #endif
828596b8d2eSBarry Smith     }
829596b8d2eSBarry Smith   }
830596b8d2eSBarry Smith   /* Loop Over B */
8310bdbc534SSatish Balay   for (i = 0; i < b->mbs; i++) {
832596b8d2eSBarry Smith     for (j = bi[i]; j < bi[i + 1]; j++) {
8330bdbc534SSatish Balay       row = i + rstart;
8340bdbc534SSatish Balay       col = garray[bj[j]];
835187ce0cbSSatish Balay       key = row * Nbs + col + 1;
836fca92195SBarry Smith       h1  = HASH(ht_size, key, tmp);
837fca92195SBarry Smith       for (k = 0; k < ht_size; k++) {
838fca92195SBarry Smith         if (!HT[(h1 + k) % ht_size]) {
839fca92195SBarry Smith           HT[(h1 + k) % ht_size] = key;
840fca92195SBarry Smith           HD[(h1 + k) % ht_size] = b->a + j * bs2;
841596b8d2eSBarry Smith           break;
8426cf91177SBarry Smith #if defined(PETSC_USE_INFO)
843187ce0cbSSatish Balay         } else {
844187ce0cbSSatish Balay           ct++;
845187ce0cbSSatish Balay #endif
846596b8d2eSBarry Smith         }
847187ce0cbSSatish Balay       }
8486cf91177SBarry Smith #if defined(PETSC_USE_INFO)
849187ce0cbSSatish Balay       if (k > max) max = k;
850187ce0cbSSatish Balay #endif
851596b8d2eSBarry Smith     }
852596b8d2eSBarry Smith   }
853596b8d2eSBarry Smith 
854596b8d2eSBarry Smith   /* Print Summary */
8556cf91177SBarry Smith #if defined(PETSC_USE_INFO)
856fca92195SBarry Smith   for (i = 0, j = 0; i < ht_size; i++) {
85726fbe8dcSKarl Rupp     if (HT[i]) j++;
858c38d4ed2SBarry Smith   }
8599566063dSJacob Faibussowitsch   PetscCall(PetscInfo(mat, "Average Search = %5.2g,max search = %" PetscInt_FMT "\n", (!j) ? (double)0.0 : (double)(((PetscReal)(ct + j)) / (double)j), max));
860187ce0cbSSatish Balay #endif
8613ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
862596b8d2eSBarry Smith }
86357b952d6SSatish Balay 
86466976f2fSJacob Faibussowitsch static PetscErrorCode MatAssemblyBegin_MPIBAIJ(Mat mat, MatAssemblyType mode)
865d71ae5a4SJacob Faibussowitsch {
866bbb85fb3SSatish Balay   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data;
867b24ad042SBarry Smith   PetscInt     nstash, reallocs;
868bbb85fb3SSatish Balay 
869bbb85fb3SSatish Balay   PetscFunctionBegin;
8703ba16761SJacob Faibussowitsch   if (baij->donotstash || mat->nooffprocentries) PetscFunctionReturn(PETSC_SUCCESS);
871bbb85fb3SSatish Balay 
8729566063dSJacob Faibussowitsch   PetscCall(MatStashScatterBegin_Private(mat, &mat->stash, mat->rmap->range));
8739566063dSJacob Faibussowitsch   PetscCall(MatStashScatterBegin_Private(mat, &mat->bstash, baij->rangebs));
8749566063dSJacob Faibussowitsch   PetscCall(MatStashGetInfo_Private(&mat->stash, &nstash, &reallocs));
8759566063dSJacob Faibussowitsch   PetscCall(PetscInfo(mat, "Stash has %" PetscInt_FMT " entries,uses %" PetscInt_FMT " mallocs.\n", nstash, reallocs));
8769566063dSJacob Faibussowitsch   PetscCall(MatStashGetInfo_Private(&mat->bstash, &nstash, &reallocs));
8779566063dSJacob Faibussowitsch   PetscCall(PetscInfo(mat, "Block-Stash has %" PetscInt_FMT " entries, uses %" PetscInt_FMT " mallocs.\n", nstash, reallocs));
8783ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
879bbb85fb3SSatish Balay }
880bbb85fb3SSatish Balay 
88166976f2fSJacob Faibussowitsch static PetscErrorCode MatAssemblyEnd_MPIBAIJ(Mat mat, MatAssemblyType mode)
882d71ae5a4SJacob Faibussowitsch {
883bbb85fb3SSatish Balay   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data;
88491c97fd4SSatish Balay   Mat_SeqBAIJ *a    = (Mat_SeqBAIJ *)baij->A->data;
885b24ad042SBarry Smith   PetscInt     i, j, rstart, ncols, flg, bs2 = baij->bs2;
886e44c0bd4SBarry Smith   PetscInt    *row, *col;
887ace3abfcSBarry Smith   PetscBool    r1, r2, r3, other_disassembled;
8883eda8832SBarry Smith   MatScalar   *val;
889b24ad042SBarry Smith   PetscMPIInt  n;
890bbb85fb3SSatish Balay 
891bbb85fb3SSatish Balay   PetscFunctionBegin;
8925fd66863SKarl Rupp   /* do not use 'b=(Mat_SeqBAIJ*)baij->B->data' as B can be reset in disassembly */
8934cb17eb5SBarry Smith   if (!baij->donotstash && !mat->nooffprocentries) {
894a2d1c673SSatish Balay     while (1) {
8959566063dSJacob Faibussowitsch       PetscCall(MatStashScatterGetMesg_Private(&mat->stash, &n, &row, &col, &val, &flg));
896a2d1c673SSatish Balay       if (!flg) break;
897a2d1c673SSatish Balay 
898bbb85fb3SSatish Balay       for (i = 0; i < n;) {
899bbb85fb3SSatish Balay         /* Now identify the consecutive vals belonging to the same row */
90026fbe8dcSKarl Rupp         for (j = i, rstart = row[j]; j < n; j++) {
90126fbe8dcSKarl Rupp           if (row[j] != rstart) break;
90226fbe8dcSKarl Rupp         }
903bbb85fb3SSatish Balay         if (j < n) ncols = j - i;
904bbb85fb3SSatish Balay         else ncols = n - i;
905bbb85fb3SSatish Balay         /* Now assemble all these values with a single function call */
9069566063dSJacob Faibussowitsch         PetscCall(MatSetValues_MPIBAIJ(mat, 1, row + i, ncols, col + i, val + i, mat->insertmode));
907bbb85fb3SSatish Balay         i = j;
908bbb85fb3SSatish Balay       }
909bbb85fb3SSatish Balay     }
9109566063dSJacob Faibussowitsch     PetscCall(MatStashScatterEnd_Private(&mat->stash));
911a2d1c673SSatish Balay     /* Now process the block-stash. Since the values are stashed column-oriented,
9125e116b59SBarry Smith        set the row-oriented flag to column-oriented, and after MatSetValues()
913a2d1c673SSatish Balay        restore the original flags */
914a2d1c673SSatish Balay     r1 = baij->roworiented;
915a2d1c673SSatish Balay     r2 = a->roworiented;
91691c97fd4SSatish Balay     r3 = ((Mat_SeqBAIJ *)baij->B->data)->roworiented;
91726fbe8dcSKarl Rupp 
9187c922b88SBarry Smith     baij->roworiented                           = PETSC_FALSE;
9197c922b88SBarry Smith     a->roworiented                              = PETSC_FALSE;
920f4f49eeaSPierre Jolivet     ((Mat_SeqBAIJ *)baij->B->data)->roworiented = PETSC_FALSE;
921a2d1c673SSatish Balay     while (1) {
9229566063dSJacob Faibussowitsch       PetscCall(MatStashScatterGetMesg_Private(&mat->bstash, &n, &row, &col, &val, &flg));
923a2d1c673SSatish Balay       if (!flg) break;
924a2d1c673SSatish Balay 
925a2d1c673SSatish Balay       for (i = 0; i < n;) {
926a2d1c673SSatish Balay         /* Now identify the consecutive vals belonging to the same row */
92726fbe8dcSKarl Rupp         for (j = i, rstart = row[j]; j < n; j++) {
92826fbe8dcSKarl Rupp           if (row[j] != rstart) break;
92926fbe8dcSKarl Rupp         }
930a2d1c673SSatish Balay         if (j < n) ncols = j - i;
931a2d1c673SSatish Balay         else ncols = n - i;
9329566063dSJacob Faibussowitsch         PetscCall(MatSetValuesBlocked_MPIBAIJ(mat, 1, row + i, ncols, col + i, val + i * bs2, mat->insertmode));
933a2d1c673SSatish Balay         i = j;
934a2d1c673SSatish Balay       }
935a2d1c673SSatish Balay     }
9369566063dSJacob Faibussowitsch     PetscCall(MatStashScatterEnd_Private(&mat->bstash));
93726fbe8dcSKarl Rupp 
938a2d1c673SSatish Balay     baij->roworiented                           = r1;
939a2d1c673SSatish Balay     a->roworiented                              = r2;
9405e116b59SBarry Smith     ((Mat_SeqBAIJ *)baij->B->data)->roworiented = r3;
941bbb85fb3SSatish Balay   }
942bbb85fb3SSatish Balay 
9439566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(baij->A, mode));
9449566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(baij->A, mode));
945bbb85fb3SSatish Balay 
946bbb85fb3SSatish Balay   /* determine if any processor has disassembled, if so we must
9476aad120cSJose E. Roman      also disassemble ourselves, in order that we may reassemble. */
948bbb85fb3SSatish Balay   /*
949bbb85fb3SSatish Balay      if nonzero structure of submatrix B cannot change then we know that
950bbb85fb3SSatish Balay      no processor disassembled thus we can skip this stuff
951bbb85fb3SSatish Balay   */
952bbb85fb3SSatish Balay   if (!((Mat_SeqBAIJ *)baij->B->data)->nonew) {
9535f9db2b2SJunchao Zhang     PetscCall(MPIU_Allreduce(&mat->was_assembled, &other_disassembled, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)mat)));
95448a46eb9SPierre Jolivet     if (mat->was_assembled && !other_disassembled) PetscCall(MatDisAssemble_MPIBAIJ(mat));
955bbb85fb3SSatish Balay   }
956bbb85fb3SSatish Balay 
95748a46eb9SPierre Jolivet   if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) PetscCall(MatSetUpMultiply_MPIBAIJ(mat));
9589566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(baij->B, mode));
9599566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(baij->B, mode));
960bbb85fb3SSatish Balay 
9616cf91177SBarry Smith #if defined(PETSC_USE_INFO)
962bbb85fb3SSatish Balay   if (baij->ht && mode == MAT_FINAL_ASSEMBLY) {
9639566063dSJacob Faibussowitsch     PetscCall(PetscInfo(mat, "Average Hash Table Search in MatSetValues = %5.2f\n", (double)((PetscReal)baij->ht_total_ct) / baij->ht_insert_ct));
96426fbe8dcSKarl Rupp 
965bbb85fb3SSatish Balay     baij->ht_total_ct  = 0;
966bbb85fb3SSatish Balay     baij->ht_insert_ct = 0;
967bbb85fb3SSatish Balay   }
968bbb85fb3SSatish Balay #endif
969bbb85fb3SSatish Balay   if (baij->ht_flag && !baij->ht && mode == MAT_FINAL_ASSEMBLY) {
9709566063dSJacob Faibussowitsch     PetscCall(MatCreateHashTable_MPIBAIJ_Private(mat, baij->ht_fact));
97126fbe8dcSKarl Rupp 
972bbb85fb3SSatish Balay     mat->ops->setvalues        = MatSetValues_MPIBAIJ_HT;
973bbb85fb3SSatish Balay     mat->ops->setvaluesblocked = MatSetValuesBlocked_MPIBAIJ_HT;
974bbb85fb3SSatish Balay   }
975bbb85fb3SSatish Balay 
9769566063dSJacob Faibussowitsch   PetscCall(PetscFree2(baij->rowvalues, baij->rowindices));
97726fbe8dcSKarl Rupp 
978f4259b30SLisandro Dalcin   baij->rowvalues = NULL;
9794f9cfa9eSBarry Smith 
9804f9cfa9eSBarry Smith   /* if no new nonzero locations are allowed in matrix then only set the matrix state the first time through */
981f4f49eeaSPierre Jolivet   if ((!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) || !((Mat_SeqBAIJ *)baij->A->data)->nonew) {
982e56f5c9eSBarry Smith     PetscObjectState state = baij->A->nonzerostate + baij->B->nonzerostate;
9831c2dc1cbSBarry Smith     PetscCall(MPIU_Allreduce(&state, &mat->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)mat)));
984e56f5c9eSBarry Smith   }
9853ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
986bbb85fb3SSatish Balay }
98757b952d6SSatish Balay 
9887da1fb6eSBarry Smith extern PetscErrorCode MatView_SeqBAIJ(Mat, PetscViewer);
9899804daf3SBarry Smith #include <petscdraw.h>
990d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatView_MPIBAIJ_ASCIIorDraworSocket(Mat mat, PetscViewer viewer)
991d71ae5a4SJacob Faibussowitsch {
99257b952d6SSatish Balay   Mat_MPIBAIJ      *baij = (Mat_MPIBAIJ *)mat->data;
9937da1fb6eSBarry Smith   PetscMPIInt       rank = baij->rank;
994d0f46423SBarry Smith   PetscInt          bs   = mat->rmap->bs;
995ace3abfcSBarry Smith   PetscBool         iascii, isdraw;
996b0a32e0cSBarry Smith   PetscViewer       sviewer;
997f3ef73ceSBarry Smith   PetscViewerFormat format;
99857b952d6SSatish Balay 
999d64ed03dSBarry Smith   PetscFunctionBegin;
10009566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &iascii));
10019566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERDRAW, &isdraw));
100232077d6dSBarry Smith   if (iascii) {
10039566063dSJacob Faibussowitsch     PetscCall(PetscViewerGetFormat(viewer, &format));
1004456192e2SBarry Smith     if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) {
10054e220ebcSLois Curfman McInnes       MatInfo info;
10069566063dSJacob Faibussowitsch       PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)mat), &rank));
10079566063dSJacob Faibussowitsch       PetscCall(MatGetInfo(mat, MAT_LOCAL, &info));
10089566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPushSynchronized(viewer));
10099371c9d4SSatish Balay       PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] Local rows %" PetscInt_FMT " nz %" PetscInt_FMT " nz alloced %" PetscInt_FMT " bs %" PetscInt_FMT " mem %g\n", rank, mat->rmap->n, (PetscInt)info.nz_used, (PetscInt)info.nz_allocated,
10109371c9d4SSatish Balay                                                    mat->rmap->bs, (double)info.memory));
10119566063dSJacob Faibussowitsch       PetscCall(MatGetInfo(baij->A, MAT_LOCAL, &info));
10129566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] on-diagonal part: nz %" PetscInt_FMT " \n", rank, (PetscInt)info.nz_used));
10139566063dSJacob Faibussowitsch       PetscCall(MatGetInfo(baij->B, MAT_LOCAL, &info));
10149566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] off-diagonal part: nz %" PetscInt_FMT " \n", rank, (PetscInt)info.nz_used));
10159566063dSJacob Faibussowitsch       PetscCall(PetscViewerFlush(viewer));
10169566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPopSynchronized(viewer));
10179566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPrintf(viewer, "Information on VecScatter used in matrix-vector product: \n"));
10189566063dSJacob Faibussowitsch       PetscCall(VecScatterView(baij->Mvctx, viewer));
10193ba16761SJacob Faibussowitsch       PetscFunctionReturn(PETSC_SUCCESS);
1020fb9695e5SSatish Balay     } else if (format == PETSC_VIEWER_ASCII_INFO) {
10219566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPrintf(viewer, "  block size is %" PetscInt_FMT "\n", bs));
10223ba16761SJacob Faibussowitsch       PetscFunctionReturn(PETSC_SUCCESS);
102304929863SHong Zhang     } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) {
10243ba16761SJacob Faibussowitsch       PetscFunctionReturn(PETSC_SUCCESS);
102557b952d6SSatish Balay     }
102657b952d6SSatish Balay   }
102757b952d6SSatish Balay 
10280f5bd95cSBarry Smith   if (isdraw) {
1029b0a32e0cSBarry Smith     PetscDraw draw;
1030ace3abfcSBarry Smith     PetscBool isnull;
10319566063dSJacob Faibussowitsch     PetscCall(PetscViewerDrawGetDraw(viewer, 0, &draw));
10329566063dSJacob Faibussowitsch     PetscCall(PetscDrawIsNull(draw, &isnull));
10333ba16761SJacob Faibussowitsch     if (isnull) PetscFunctionReturn(PETSC_SUCCESS);
103457b952d6SSatish Balay   }
103557b952d6SSatish Balay 
10367da1fb6eSBarry Smith   {
103757b952d6SSatish Balay     /* assemble the entire matrix onto first processor. */
103857b952d6SSatish Balay     Mat          A;
103957b952d6SSatish Balay     Mat_SeqBAIJ *Aloc;
1040d0f46423SBarry Smith     PetscInt     M = mat->rmap->N, N = mat->cmap->N, *ai, *aj, col, i, j, k, *rvals, mbs = baij->mbs;
10413eda8832SBarry Smith     MatScalar   *a;
10423e219373SBarry Smith     const char  *matname;
104357b952d6SSatish Balay 
1044f204ca49SKris Buschelman     /* Here we are creating a temporary matrix, so will assume MPIBAIJ is acceptable */
1045f204ca49SKris Buschelman     /* Perhaps this should be the type of mat? */
10469566063dSJacob Faibussowitsch     PetscCall(MatCreate(PetscObjectComm((PetscObject)mat), &A));
1047dd400576SPatrick Sanan     if (rank == 0) {
10489566063dSJacob Faibussowitsch       PetscCall(MatSetSizes(A, M, N, M, N));
1049d64ed03dSBarry Smith     } else {
10509566063dSJacob Faibussowitsch       PetscCall(MatSetSizes(A, 0, 0, M, N));
105157b952d6SSatish Balay     }
10529566063dSJacob Faibussowitsch     PetscCall(MatSetType(A, MATMPIBAIJ));
10539566063dSJacob Faibussowitsch     PetscCall(MatMPIBAIJSetPreallocation(A, mat->rmap->bs, 0, NULL, 0, NULL));
10549566063dSJacob Faibussowitsch     PetscCall(MatSetOption(A, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_FALSE));
105557b952d6SSatish Balay 
105657b952d6SSatish Balay     /* copy over the A part */
105757b952d6SSatish Balay     Aloc = (Mat_SeqBAIJ *)baij->A->data;
10589371c9d4SSatish Balay     ai   = Aloc->i;
10599371c9d4SSatish Balay     aj   = Aloc->j;
10609371c9d4SSatish Balay     a    = Aloc->a;
10619566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(bs, &rvals));
106257b952d6SSatish Balay 
106357b952d6SSatish Balay     for (i = 0; i < mbs; i++) {
1064899cda47SBarry Smith       rvals[0] = bs * (baij->rstartbs + i);
106526fbe8dcSKarl Rupp       for (j = 1; j < bs; j++) rvals[j] = rvals[j - 1] + 1;
106657b952d6SSatish Balay       for (j = ai[i]; j < ai[i + 1]; j++) {
1067899cda47SBarry Smith         col = (baij->cstartbs + aj[j]) * bs;
106857b952d6SSatish Balay         for (k = 0; k < bs; k++) {
10699566063dSJacob Faibussowitsch           PetscCall(MatSetValues_MPIBAIJ(A, bs, rvals, 1, &col, a, INSERT_VALUES));
10709371c9d4SSatish Balay           col++;
10719371c9d4SSatish Balay           a += bs;
107257b952d6SSatish Balay         }
107357b952d6SSatish Balay       }
107457b952d6SSatish Balay     }
107557b952d6SSatish Balay     /* copy over the B part */
107657b952d6SSatish Balay     Aloc = (Mat_SeqBAIJ *)baij->B->data;
10779371c9d4SSatish Balay     ai   = Aloc->i;
10789371c9d4SSatish Balay     aj   = Aloc->j;
10799371c9d4SSatish Balay     a    = Aloc->a;
108057b952d6SSatish Balay     for (i = 0; i < mbs; i++) {
1081899cda47SBarry Smith       rvals[0] = bs * (baij->rstartbs + i);
108226fbe8dcSKarl Rupp       for (j = 1; j < bs; j++) rvals[j] = rvals[j - 1] + 1;
108357b952d6SSatish Balay       for (j = ai[i]; j < ai[i + 1]; j++) {
108457b952d6SSatish Balay         col = baij->garray[aj[j]] * bs;
108557b952d6SSatish Balay         for (k = 0; k < bs; k++) {
10869566063dSJacob Faibussowitsch           PetscCall(MatSetValues_MPIBAIJ(A, bs, rvals, 1, &col, a, INSERT_VALUES));
10879371c9d4SSatish Balay           col++;
10889371c9d4SSatish Balay           a += bs;
108957b952d6SSatish Balay         }
109057b952d6SSatish Balay       }
109157b952d6SSatish Balay     }
10929566063dSJacob Faibussowitsch     PetscCall(PetscFree(rvals));
10939566063dSJacob Faibussowitsch     PetscCall(MatAssemblyBegin(A, MAT_FINAL_ASSEMBLY));
10949566063dSJacob Faibussowitsch     PetscCall(MatAssemblyEnd(A, MAT_FINAL_ASSEMBLY));
109555843e3eSBarry Smith     /*
109655843e3eSBarry Smith        Everyone has to call to draw the matrix since the graphics waits are
1097b0a32e0cSBarry Smith        synchronized across all processors that share the PetscDraw object
109855843e3eSBarry Smith     */
10999566063dSJacob Faibussowitsch     PetscCall(PetscViewerGetSubViewer(viewer, PETSC_COMM_SELF, &sviewer));
110023a3927dSBarry Smith     if (((PetscObject)mat)->name) PetscCall(PetscObjectGetName((PetscObject)mat, &matname));
1101dd400576SPatrick Sanan     if (rank == 0) {
1102f4f49eeaSPierre Jolivet       if (((PetscObject)mat)->name) PetscCall(PetscObjectSetName((PetscObject)((Mat_MPIBAIJ *)A->data)->A, matname));
1103f4f49eeaSPierre Jolivet       PetscCall(MatView_SeqBAIJ(((Mat_MPIBAIJ *)A->data)->A, sviewer));
110457b952d6SSatish Balay     }
11059566063dSJacob Faibussowitsch     PetscCall(PetscViewerRestoreSubViewer(viewer, PETSC_COMM_SELF, &sviewer));
11069566063dSJacob Faibussowitsch     PetscCall(MatDestroy(&A));
110757b952d6SSatish Balay   }
11083ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
110957b952d6SSatish Balay }
111057b952d6SSatish Balay 
1111618cc2edSLisandro Dalcin /* Used for both MPIBAIJ and MPISBAIJ matrices */
1112d71ae5a4SJacob Faibussowitsch PetscErrorCode MatView_MPIBAIJ_Binary(Mat mat, PetscViewer viewer)
1113d71ae5a4SJacob Faibussowitsch {
1114b51a4376SLisandro Dalcin   Mat_MPIBAIJ    *aij    = (Mat_MPIBAIJ *)mat->data;
1115b51a4376SLisandro Dalcin   Mat_SeqBAIJ    *A      = (Mat_SeqBAIJ *)aij->A->data;
1116b51a4376SLisandro Dalcin   Mat_SeqBAIJ    *B      = (Mat_SeqBAIJ *)aij->B->data;
1117b51a4376SLisandro Dalcin   const PetscInt *garray = aij->garray;
111817a3732bSBarry Smith   PetscInt        header[4], M, N, m, rs, cs, bs, cnt, i, j, ja, jb, k, l;
111917a3732bSBarry Smith   PetscInt64      nz, hnz;
1120b51a4376SLisandro Dalcin   PetscInt       *rowlens, *colidxs;
1121b51a4376SLisandro Dalcin   PetscScalar    *matvals;
112217a3732bSBarry Smith   PetscMPIInt     rank;
1123660746e0SBarry Smith 
1124660746e0SBarry Smith   PetscFunctionBegin;
11259566063dSJacob Faibussowitsch   PetscCall(PetscViewerSetUp(viewer));
1126b51a4376SLisandro Dalcin 
1127b51a4376SLisandro Dalcin   M  = mat->rmap->N;
1128b51a4376SLisandro Dalcin   N  = mat->cmap->N;
1129b51a4376SLisandro Dalcin   m  = mat->rmap->n;
1130b51a4376SLisandro Dalcin   rs = mat->rmap->rstart;
1131b51a4376SLisandro Dalcin   cs = mat->cmap->rstart;
1132b51a4376SLisandro Dalcin   bs = mat->rmap->bs;
1133b51a4376SLisandro Dalcin   nz = bs * bs * (A->nz + B->nz);
1134b51a4376SLisandro Dalcin 
1135b51a4376SLisandro Dalcin   /* write matrix header */
1136660746e0SBarry Smith   header[0] = MAT_FILE_CLASSID;
11379371c9d4SSatish Balay   header[1] = M;
11389371c9d4SSatish Balay   header[2] = N;
113917a3732bSBarry Smith   PetscCallMPI(MPI_Reduce(&nz, &hnz, 1, MPIU_INT64, MPI_SUM, 0, PetscObjectComm((PetscObject)mat)));
114017a3732bSBarry Smith   PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)mat), &rank));
114117a3732bSBarry Smith   if (rank == 0) PetscCall(PetscIntCast(hnz, &header[3]));
11429566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryWrite(viewer, header, 4, PETSC_INT));
1143660746e0SBarry Smith 
1144b51a4376SLisandro Dalcin   /* fill in and store row lengths */
11459566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(m, &rowlens));
1146b51a4376SLisandro Dalcin   for (cnt = 0, i = 0; i < A->mbs; i++)
11479371c9d4SSatish Balay     for (j = 0; j < bs; j++) rowlens[cnt++] = bs * (A->i[i + 1] - A->i[i] + B->i[i + 1] - B->i[i]);
11489566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryWriteAll(viewer, rowlens, m, rs, M, PETSC_INT));
11499566063dSJacob Faibussowitsch   PetscCall(PetscFree(rowlens));
1150660746e0SBarry Smith 
1151b51a4376SLisandro Dalcin   /* fill in and store column indices */
11529566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(nz, &colidxs));
1153b51a4376SLisandro Dalcin   for (cnt = 0, i = 0; i < A->mbs; i++) {
1154b51a4376SLisandro Dalcin     for (k = 0; k < bs; k++) {
1155b51a4376SLisandro Dalcin       for (jb = B->i[i]; jb < B->i[i + 1]; jb++) {
1156b51a4376SLisandro Dalcin         if (garray[B->j[jb]] > cs / bs) break;
11579371c9d4SSatish Balay         for (l = 0; l < bs; l++) colidxs[cnt++] = bs * garray[B->j[jb]] + l;
1158660746e0SBarry Smith       }
1159b51a4376SLisandro Dalcin       for (ja = A->i[i]; ja < A->i[i + 1]; ja++)
11609371c9d4SSatish Balay         for (l = 0; l < bs; l++) colidxs[cnt++] = bs * A->j[ja] + l + cs;
1161b51a4376SLisandro Dalcin       for (; jb < B->i[i + 1]; jb++)
11629371c9d4SSatish Balay         for (l = 0; l < bs; l++) colidxs[cnt++] = bs * garray[B->j[jb]] + l;
1163660746e0SBarry Smith     }
1164660746e0SBarry Smith   }
116517a3732bSBarry Smith   PetscCheck(cnt == nz, PETSC_COMM_SELF, PETSC_ERR_LIB, "Internal PETSc error: cnt = %" PetscInt_FMT " nz = %" PetscInt64_FMT, cnt, nz);
11669566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryWriteAll(viewer, colidxs, nz, PETSC_DECIDE, PETSC_DECIDE, PETSC_INT));
11679566063dSJacob Faibussowitsch   PetscCall(PetscFree(colidxs));
1168660746e0SBarry Smith 
1169b51a4376SLisandro Dalcin   /* fill in and store nonzero values */
11709566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(nz, &matvals));
1171b51a4376SLisandro Dalcin   for (cnt = 0, i = 0; i < A->mbs; i++) {
1172b51a4376SLisandro Dalcin     for (k = 0; k < bs; k++) {
1173b51a4376SLisandro Dalcin       for (jb = B->i[i]; jb < B->i[i + 1]; jb++) {
1174b51a4376SLisandro Dalcin         if (garray[B->j[jb]] > cs / bs) break;
11759371c9d4SSatish Balay         for (l = 0; l < bs; l++) matvals[cnt++] = B->a[bs * (bs * jb + l) + k];
1176660746e0SBarry Smith       }
1177b51a4376SLisandro Dalcin       for (ja = A->i[i]; ja < A->i[i + 1]; ja++)
11789371c9d4SSatish Balay         for (l = 0; l < bs; l++) matvals[cnt++] = A->a[bs * (bs * ja + l) + k];
1179b51a4376SLisandro Dalcin       for (; jb < B->i[i + 1]; jb++)
11809371c9d4SSatish Balay         for (l = 0; l < bs; l++) matvals[cnt++] = B->a[bs * (bs * jb + l) + k];
1181660746e0SBarry Smith     }
1182b51a4376SLisandro Dalcin   }
11839566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryWriteAll(viewer, matvals, nz, PETSC_DECIDE, PETSC_DECIDE, PETSC_SCALAR));
11849566063dSJacob Faibussowitsch   PetscCall(PetscFree(matvals));
1185660746e0SBarry Smith 
1186b51a4376SLisandro Dalcin   /* write block size option to the viewer's .info file */
11879566063dSJacob Faibussowitsch   PetscCall(MatView_Binary_BlockSizes(mat, viewer));
11883ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1189660746e0SBarry Smith }
1190660746e0SBarry Smith 
1191d71ae5a4SJacob Faibussowitsch PetscErrorCode MatView_MPIBAIJ(Mat mat, PetscViewer viewer)
1192d71ae5a4SJacob Faibussowitsch {
1193ace3abfcSBarry Smith   PetscBool iascii, isdraw, issocket, isbinary;
119457b952d6SSatish Balay 
1195d64ed03dSBarry Smith   PetscFunctionBegin;
11969566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &iascii));
11979566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERDRAW, &isdraw));
11989566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERSOCKET, &issocket));
11999566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary));
1200660746e0SBarry Smith   if (iascii || isdraw || issocket) {
12019566063dSJacob Faibussowitsch     PetscCall(MatView_MPIBAIJ_ASCIIorDraworSocket(mat, viewer));
12021baa6e33SBarry Smith   } else if (isbinary) PetscCall(MatView_MPIBAIJ_Binary(mat, viewer));
12033ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
120457b952d6SSatish Balay }
120557b952d6SSatish Balay 
120666976f2fSJacob Faibussowitsch static PetscErrorCode MatMult_MPIBAIJ(Mat A, Vec xx, Vec yy)
1207d71ae5a4SJacob Faibussowitsch {
1208cee3aa6bSSatish Balay   Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data;
1209b24ad042SBarry Smith   PetscInt     nt;
1210cee3aa6bSSatish Balay 
1211d64ed03dSBarry Smith   PetscFunctionBegin;
12129566063dSJacob Faibussowitsch   PetscCall(VecGetLocalSize(xx, &nt));
12135f80ce2aSJacob Faibussowitsch   PetscCheck(nt == A->cmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Incompatible partition of A and xx");
12149566063dSJacob Faibussowitsch   PetscCall(VecGetLocalSize(yy, &nt));
1215da81f932SPierre Jolivet   PetscCheck(nt == A->rmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Incompatible partition of A and yy");
12169566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(a->Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD));
12179566063dSJacob Faibussowitsch   PetscCall((*a->A->ops->mult)(a->A, xx, yy));
12189566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(a->Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD));
12199566063dSJacob Faibussowitsch   PetscCall((*a->B->ops->multadd)(a->B, a->lvec, yy, yy));
12203ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1221cee3aa6bSSatish Balay }
1222cee3aa6bSSatish Balay 
122366976f2fSJacob Faibussowitsch static PetscErrorCode MatMultAdd_MPIBAIJ(Mat A, Vec xx, Vec yy, Vec zz)
1224d71ae5a4SJacob Faibussowitsch {
1225cee3aa6bSSatish Balay   Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data;
1226d64ed03dSBarry Smith 
1227d64ed03dSBarry Smith   PetscFunctionBegin;
12289566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(a->Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD));
12299566063dSJacob Faibussowitsch   PetscCall((*a->A->ops->multadd)(a->A, xx, yy, zz));
12309566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(a->Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD));
12319566063dSJacob Faibussowitsch   PetscCall((*a->B->ops->multadd)(a->B, a->lvec, zz, zz));
12323ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1233cee3aa6bSSatish Balay }
1234cee3aa6bSSatish Balay 
123566976f2fSJacob Faibussowitsch static PetscErrorCode MatMultTranspose_MPIBAIJ(Mat A, Vec xx, Vec yy)
1236d71ae5a4SJacob Faibussowitsch {
1237cee3aa6bSSatish Balay   Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data;
1238cee3aa6bSSatish Balay 
1239d64ed03dSBarry Smith   PetscFunctionBegin;
1240cee3aa6bSSatish Balay   /* do nondiagonal part */
12419566063dSJacob Faibussowitsch   PetscCall((*a->B->ops->multtranspose)(a->B, xx, a->lvec));
1242cee3aa6bSSatish Balay   /* do local part */
12439566063dSJacob Faibussowitsch   PetscCall((*a->A->ops->multtranspose)(a->A, xx, yy));
1244e4a140f6SJunchao Zhang   /* add partial results together */
12459566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(a->Mvctx, a->lvec, yy, ADD_VALUES, SCATTER_REVERSE));
12469566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(a->Mvctx, a->lvec, yy, ADD_VALUES, SCATTER_REVERSE));
12473ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1248cee3aa6bSSatish Balay }
1249cee3aa6bSSatish Balay 
125066976f2fSJacob Faibussowitsch static PetscErrorCode MatMultTransposeAdd_MPIBAIJ(Mat A, Vec xx, Vec yy, Vec zz)
1251d71ae5a4SJacob Faibussowitsch {
1252cee3aa6bSSatish Balay   Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data;
1253cee3aa6bSSatish Balay 
1254d64ed03dSBarry Smith   PetscFunctionBegin;
1255cee3aa6bSSatish Balay   /* do nondiagonal part */
12569566063dSJacob Faibussowitsch   PetscCall((*a->B->ops->multtranspose)(a->B, xx, a->lvec));
1257cee3aa6bSSatish Balay   /* do local part */
12589566063dSJacob Faibussowitsch   PetscCall((*a->A->ops->multtransposeadd)(a->A, xx, yy, zz));
1259e4a140f6SJunchao Zhang   /* add partial results together */
12609566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(a->Mvctx, a->lvec, zz, ADD_VALUES, SCATTER_REVERSE));
12619566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(a->Mvctx, a->lvec, zz, ADD_VALUES, SCATTER_REVERSE));
12623ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1263cee3aa6bSSatish Balay }
1264cee3aa6bSSatish Balay 
1265cee3aa6bSSatish Balay /*
1266cee3aa6bSSatish Balay   This only works correctly for square matrices where the subblock A->A is the
1267cee3aa6bSSatish Balay    diagonal block
1268cee3aa6bSSatish Balay */
126966976f2fSJacob Faibussowitsch static PetscErrorCode MatGetDiagonal_MPIBAIJ(Mat A, Vec v)
1270d71ae5a4SJacob Faibussowitsch {
1271d64ed03dSBarry Smith   PetscFunctionBegin;
12725f80ce2aSJacob Faibussowitsch   PetscCheck(A->rmap->N == A->cmap->N, PETSC_COMM_SELF, PETSC_ERR_SUP, "Supports only square matrix where A->A is diag block");
12739566063dSJacob Faibussowitsch   PetscCall(MatGetDiagonal(((Mat_MPIBAIJ *)A->data)->A, v));
12743ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1275cee3aa6bSSatish Balay }
1276cee3aa6bSSatish Balay 
127766976f2fSJacob Faibussowitsch static PetscErrorCode MatScale_MPIBAIJ(Mat A, PetscScalar aa)
1278d71ae5a4SJacob Faibussowitsch {
1279cee3aa6bSSatish Balay   Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data;
1280d64ed03dSBarry Smith 
1281d64ed03dSBarry Smith   PetscFunctionBegin;
12829566063dSJacob Faibussowitsch   PetscCall(MatScale(a->A, aa));
12839566063dSJacob Faibussowitsch   PetscCall(MatScale(a->B, aa));
12843ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1285cee3aa6bSSatish Balay }
1286026e39d0SSatish Balay 
1287d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetRow_MPIBAIJ(Mat matin, PetscInt row, PetscInt *nz, PetscInt **idx, PetscScalar **v)
1288d71ae5a4SJacob Faibussowitsch {
1289acdf5bf4SSatish Balay   Mat_MPIBAIJ *mat = (Mat_MPIBAIJ *)matin->data;
129087828ca2SBarry Smith   PetscScalar *vworkA, *vworkB, **pvA, **pvB, *v_p;
1291d0f46423SBarry Smith   PetscInt     bs = matin->rmap->bs, bs2 = mat->bs2, i, *cworkA, *cworkB, **pcA, **pcB;
1292d0f46423SBarry Smith   PetscInt     nztot, nzA, nzB, lrow, brstart = matin->rmap->rstart, brend = matin->rmap->rend;
1293899cda47SBarry Smith   PetscInt    *cmap, *idx_p, cstart = mat->cstartbs;
1294acdf5bf4SSatish Balay 
1295d64ed03dSBarry Smith   PetscFunctionBegin;
12965f80ce2aSJacob Faibussowitsch   PetscCheck(row >= brstart && row < brend, PETSC_COMM_SELF, PETSC_ERR_SUP, "Only local rows");
12975f80ce2aSJacob Faibussowitsch   PetscCheck(!mat->getrowactive, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Already active");
1298acdf5bf4SSatish Balay   mat->getrowactive = PETSC_TRUE;
1299acdf5bf4SSatish Balay 
1300acdf5bf4SSatish Balay   if (!mat->rowvalues && (idx || v)) {
1301acdf5bf4SSatish Balay     /*
1302acdf5bf4SSatish Balay         allocate enough space to hold information from the longest row.
1303acdf5bf4SSatish Balay     */
1304acdf5bf4SSatish Balay     Mat_SeqBAIJ *Aa = (Mat_SeqBAIJ *)mat->A->data, *Ba = (Mat_SeqBAIJ *)mat->B->data;
1305b24ad042SBarry Smith     PetscInt     max = 1, mbs = mat->mbs, tmp;
1306bd16c2feSSatish Balay     for (i = 0; i < mbs; i++) {
1307acdf5bf4SSatish Balay       tmp = Aa->i[i + 1] - Aa->i[i] + Ba->i[i + 1] - Ba->i[i];
130826fbe8dcSKarl Rupp       if (max < tmp) max = tmp;
1309acdf5bf4SSatish Balay     }
13109566063dSJacob Faibussowitsch     PetscCall(PetscMalloc2(max * bs2, &mat->rowvalues, max * bs2, &mat->rowindices));
1311acdf5bf4SSatish Balay   }
1312d9d09a02SSatish Balay   lrow = row - brstart;
1313acdf5bf4SSatish Balay 
13149371c9d4SSatish Balay   pvA = &vworkA;
13159371c9d4SSatish Balay   pcA = &cworkA;
13169371c9d4SSatish Balay   pvB = &vworkB;
13179371c9d4SSatish Balay   pcB = &cworkB;
13189371c9d4SSatish Balay   if (!v) {
13199371c9d4SSatish Balay     pvA = NULL;
13209371c9d4SSatish Balay     pvB = NULL;
13219371c9d4SSatish Balay   }
13229371c9d4SSatish Balay   if (!idx) {
13239371c9d4SSatish Balay     pcA = NULL;
13249371c9d4SSatish Balay     if (!v) pcB = NULL;
13259371c9d4SSatish Balay   }
13269566063dSJacob Faibussowitsch   PetscCall((*mat->A->ops->getrow)(mat->A, lrow, &nzA, pcA, pvA));
13279566063dSJacob Faibussowitsch   PetscCall((*mat->B->ops->getrow)(mat->B, lrow, &nzB, pcB, pvB));
1328acdf5bf4SSatish Balay   nztot = nzA + nzB;
1329acdf5bf4SSatish Balay 
1330acdf5bf4SSatish Balay   cmap = mat->garray;
1331acdf5bf4SSatish Balay   if (v || idx) {
1332acdf5bf4SSatish Balay     if (nztot) {
1333acdf5bf4SSatish Balay       /* Sort by increasing column numbers, assuming A and B already sorted */
1334b24ad042SBarry Smith       PetscInt imark = -1;
1335acdf5bf4SSatish Balay       if (v) {
1336acdf5bf4SSatish Balay         *v = v_p = mat->rowvalues;
1337acdf5bf4SSatish Balay         for (i = 0; i < nzB; i++) {
1338d9d09a02SSatish Balay           if (cmap[cworkB[i] / bs] < cstart) v_p[i] = vworkB[i];
1339acdf5bf4SSatish Balay           else break;
1340acdf5bf4SSatish Balay         }
1341acdf5bf4SSatish Balay         imark = i;
1342acdf5bf4SSatish Balay         for (i = 0; i < nzA; i++) v_p[imark + i] = vworkA[i];
1343acdf5bf4SSatish Balay         for (i = imark; i < nzB; i++) v_p[nzA + i] = vworkB[i];
1344acdf5bf4SSatish Balay       }
1345acdf5bf4SSatish Balay       if (idx) {
1346acdf5bf4SSatish Balay         *idx = idx_p = mat->rowindices;
1347acdf5bf4SSatish Balay         if (imark > -1) {
1348ad540459SPierre Jolivet           for (i = 0; i < imark; i++) idx_p[i] = cmap[cworkB[i] / bs] * bs + cworkB[i] % bs;
1349acdf5bf4SSatish Balay         } else {
1350acdf5bf4SSatish Balay           for (i = 0; i < nzB; i++) {
135126fbe8dcSKarl Rupp             if (cmap[cworkB[i] / bs] < cstart) idx_p[i] = cmap[cworkB[i] / bs] * bs + cworkB[i] % bs;
1352acdf5bf4SSatish Balay             else break;
1353acdf5bf4SSatish Balay           }
1354acdf5bf4SSatish Balay           imark = i;
1355acdf5bf4SSatish Balay         }
1356d9d09a02SSatish Balay         for (i = 0; i < nzA; i++) idx_p[imark + i] = cstart * bs + cworkA[i];
1357d9d09a02SSatish Balay         for (i = imark; i < nzB; i++) idx_p[nzA + i] = cmap[cworkB[i] / bs] * bs + cworkB[i] % bs;
1358acdf5bf4SSatish Balay       }
1359d64ed03dSBarry Smith     } else {
1360f4259b30SLisandro Dalcin       if (idx) *idx = NULL;
1361f4259b30SLisandro Dalcin       if (v) *v = NULL;
1362d212a18eSSatish Balay     }
1363acdf5bf4SSatish Balay   }
1364acdf5bf4SSatish Balay   *nz = nztot;
13659566063dSJacob Faibussowitsch   PetscCall((*mat->A->ops->restorerow)(mat->A, lrow, &nzA, pcA, pvA));
13669566063dSJacob Faibussowitsch   PetscCall((*mat->B->ops->restorerow)(mat->B, lrow, &nzB, pcB, pvB));
13673ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1368acdf5bf4SSatish Balay }
1369acdf5bf4SSatish Balay 
1370d71ae5a4SJacob Faibussowitsch PetscErrorCode MatRestoreRow_MPIBAIJ(Mat mat, PetscInt row, PetscInt *nz, PetscInt **idx, PetscScalar **v)
1371d71ae5a4SJacob Faibussowitsch {
1372acdf5bf4SSatish Balay   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data;
1373d64ed03dSBarry Smith 
1374d64ed03dSBarry Smith   PetscFunctionBegin;
13755f80ce2aSJacob Faibussowitsch   PetscCheck(baij->getrowactive, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "MatGetRow not called");
1376acdf5bf4SSatish Balay   baij->getrowactive = PETSC_FALSE;
13773ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1378acdf5bf4SSatish Balay }
1379acdf5bf4SSatish Balay 
138066976f2fSJacob Faibussowitsch static PetscErrorCode MatZeroEntries_MPIBAIJ(Mat A)
1381d71ae5a4SJacob Faibussowitsch {
138258667388SSatish Balay   Mat_MPIBAIJ *l = (Mat_MPIBAIJ *)A->data;
1383d64ed03dSBarry Smith 
1384d64ed03dSBarry Smith   PetscFunctionBegin;
13859566063dSJacob Faibussowitsch   PetscCall(MatZeroEntries(l->A));
13869566063dSJacob Faibussowitsch   PetscCall(MatZeroEntries(l->B));
13873ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
138858667388SSatish Balay }
13890ac07820SSatish Balay 
139066976f2fSJacob Faibussowitsch static PetscErrorCode MatGetInfo_MPIBAIJ(Mat matin, MatInfoType flag, MatInfo *info)
1391d71ae5a4SJacob Faibussowitsch {
13924e220ebcSLois Curfman McInnes   Mat_MPIBAIJ   *a = (Mat_MPIBAIJ *)matin->data;
13934e220ebcSLois Curfman McInnes   Mat            A = a->A, B = a->B;
13943966268fSBarry Smith   PetscLogDouble isend[5], irecv[5];
13950ac07820SSatish Balay 
1396d64ed03dSBarry Smith   PetscFunctionBegin;
1397d0f46423SBarry Smith   info->block_size = (PetscReal)matin->rmap->bs;
139826fbe8dcSKarl Rupp 
13999566063dSJacob Faibussowitsch   PetscCall(MatGetInfo(A, MAT_LOCAL, info));
140026fbe8dcSKarl Rupp 
14019371c9d4SSatish Balay   isend[0] = info->nz_used;
14029371c9d4SSatish Balay   isend[1] = info->nz_allocated;
14039371c9d4SSatish Balay   isend[2] = info->nz_unneeded;
14049371c9d4SSatish Balay   isend[3] = info->memory;
14059371c9d4SSatish Balay   isend[4] = info->mallocs;
140626fbe8dcSKarl Rupp 
14079566063dSJacob Faibussowitsch   PetscCall(MatGetInfo(B, MAT_LOCAL, info));
140826fbe8dcSKarl Rupp 
14099371c9d4SSatish Balay   isend[0] += info->nz_used;
14109371c9d4SSatish Balay   isend[1] += info->nz_allocated;
14119371c9d4SSatish Balay   isend[2] += info->nz_unneeded;
14129371c9d4SSatish Balay   isend[3] += info->memory;
14139371c9d4SSatish Balay   isend[4] += info->mallocs;
141426fbe8dcSKarl Rupp 
14150ac07820SSatish Balay   if (flag == MAT_LOCAL) {
14164e220ebcSLois Curfman McInnes     info->nz_used      = isend[0];
14174e220ebcSLois Curfman McInnes     info->nz_allocated = isend[1];
14184e220ebcSLois Curfman McInnes     info->nz_unneeded  = isend[2];
14194e220ebcSLois Curfman McInnes     info->memory       = isend[3];
14204e220ebcSLois Curfman McInnes     info->mallocs      = isend[4];
14210ac07820SSatish Balay   } else if (flag == MAT_GLOBAL_MAX) {
14221c2dc1cbSBarry Smith     PetscCall(MPIU_Allreduce(isend, irecv, 5, MPIU_PETSCLOGDOUBLE, MPI_MAX, PetscObjectComm((PetscObject)matin)));
142326fbe8dcSKarl Rupp 
14244e220ebcSLois Curfman McInnes     info->nz_used      = irecv[0];
14254e220ebcSLois Curfman McInnes     info->nz_allocated = irecv[1];
14264e220ebcSLois Curfman McInnes     info->nz_unneeded  = irecv[2];
14274e220ebcSLois Curfman McInnes     info->memory       = irecv[3];
14284e220ebcSLois Curfman McInnes     info->mallocs      = irecv[4];
14290ac07820SSatish Balay   } else if (flag == MAT_GLOBAL_SUM) {
14301c2dc1cbSBarry Smith     PetscCall(MPIU_Allreduce(isend, irecv, 5, MPIU_PETSCLOGDOUBLE, MPI_SUM, PetscObjectComm((PetscObject)matin)));
143126fbe8dcSKarl Rupp 
14324e220ebcSLois Curfman McInnes     info->nz_used      = irecv[0];
14334e220ebcSLois Curfman McInnes     info->nz_allocated = irecv[1];
14344e220ebcSLois Curfman McInnes     info->nz_unneeded  = irecv[2];
14354e220ebcSLois Curfman McInnes     info->memory       = irecv[3];
14364e220ebcSLois Curfman McInnes     info->mallocs      = irecv[4];
143798921bdaSJacob Faibussowitsch   } else SETERRQ(PetscObjectComm((PetscObject)matin), PETSC_ERR_ARG_WRONG, "Unknown MatInfoType argument %d", (int)flag);
14384e220ebcSLois Curfman McInnes   info->fill_ratio_given  = 0; /* no parallel LU/ILU/Cholesky */
14394e220ebcSLois Curfman McInnes   info->fill_ratio_needed = 0;
14404e220ebcSLois Curfman McInnes   info->factor_mallocs    = 0;
14413ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
14420ac07820SSatish Balay }
14430ac07820SSatish Balay 
144466976f2fSJacob Faibussowitsch static PetscErrorCode MatSetOption_MPIBAIJ(Mat A, MatOption op, PetscBool flg)
1445d71ae5a4SJacob Faibussowitsch {
144658667388SSatish Balay   Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data;
144758667388SSatish Balay 
1448d64ed03dSBarry Smith   PetscFunctionBegin;
144912c028f9SKris Buschelman   switch (op) {
1450512a5fc5SBarry Smith   case MAT_NEW_NONZERO_LOCATIONS:
145112c028f9SKris Buschelman   case MAT_NEW_NONZERO_ALLOCATION_ERR:
145228b2fa4aSMatthew Knepley   case MAT_UNUSED_NONZERO_LOCATION_ERR:
1453a9817697SBarry Smith   case MAT_KEEP_NONZERO_PATTERN:
145412c028f9SKris Buschelman   case MAT_NEW_NONZERO_LOCATION_ERR:
145543674050SBarry Smith     MatCheckPreallocated(A, 1);
14569566063dSJacob Faibussowitsch     PetscCall(MatSetOption(a->A, op, flg));
14579566063dSJacob Faibussowitsch     PetscCall(MatSetOption(a->B, op, flg));
145812c028f9SKris Buschelman     break;
145912c028f9SKris Buschelman   case MAT_ROW_ORIENTED:
146043674050SBarry Smith     MatCheckPreallocated(A, 1);
14614e0d8c25SBarry Smith     a->roworiented = flg;
146226fbe8dcSKarl Rupp 
14639566063dSJacob Faibussowitsch     PetscCall(MatSetOption(a->A, op, flg));
14649566063dSJacob Faibussowitsch     PetscCall(MatSetOption(a->B, op, flg));
146512c028f9SKris Buschelman     break;
14668c78258cSHong Zhang   case MAT_FORCE_DIAGONAL_ENTRIES:
1467d71ae5a4SJacob Faibussowitsch   case MAT_SORTED_FULL:
1468d71ae5a4SJacob Faibussowitsch     PetscCall(PetscInfo(A, "Option %s ignored\n", MatOptions[op]));
1469d71ae5a4SJacob Faibussowitsch     break;
1470d71ae5a4SJacob Faibussowitsch   case MAT_IGNORE_OFF_PROC_ENTRIES:
1471d71ae5a4SJacob Faibussowitsch     a->donotstash = flg;
1472d71ae5a4SJacob Faibussowitsch     break;
147312c028f9SKris Buschelman   case MAT_USE_HASH_TABLE:
14744e0d8c25SBarry Smith     a->ht_flag = flg;
1475abf3b562SBarry Smith     a->ht_fact = 1.39;
147612c028f9SKris Buschelman     break;
147777e54ba9SKris Buschelman   case MAT_SYMMETRIC:
147877e54ba9SKris Buschelman   case MAT_STRUCTURALLY_SYMMETRIC:
14792188ac68SBarry Smith   case MAT_HERMITIAN:
1480c10200c1SHong Zhang   case MAT_SUBMAT_SINGLEIS:
14812188ac68SBarry Smith   case MAT_SYMMETRY_ETERNAL:
1482b94d7dedSBarry Smith   case MAT_STRUCTURAL_SYMMETRY_ETERNAL:
1483b94d7dedSBarry Smith   case MAT_SPD_ETERNAL:
1484b94d7dedSBarry Smith     /* if the diagonal matrix is square it inherits some of the properties above */
148577e54ba9SKris Buschelman     break;
1486d71ae5a4SJacob Faibussowitsch   default:
1487d71ae5a4SJacob Faibussowitsch     SETERRQ(PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "unknown option %d", op);
1488d64ed03dSBarry Smith   }
14893ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
149058667388SSatish Balay }
149158667388SSatish Balay 
149266976f2fSJacob Faibussowitsch static PetscErrorCode MatTranspose_MPIBAIJ(Mat A, MatReuse reuse, Mat *matout)
1493d71ae5a4SJacob Faibussowitsch {
14940ac07820SSatish Balay   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)A->data;
14950ac07820SSatish Balay   Mat_SeqBAIJ *Aloc;
14960ac07820SSatish Balay   Mat          B;
1497d0f46423SBarry Smith   PetscInt     M = A->rmap->N, N = A->cmap->N, *ai, *aj, i, *rvals, j, k, col;
1498d0f46423SBarry Smith   PetscInt     bs = A->rmap->bs, mbs = baij->mbs;
14993eda8832SBarry Smith   MatScalar   *a;
15000ac07820SSatish Balay 
1501d64ed03dSBarry Smith   PetscFunctionBegin;
15027fb60732SBarry Smith   if (reuse == MAT_REUSE_MATRIX) PetscCall(MatTransposeCheckNonzeroState_Private(A, *matout));
1503cf37664fSBarry Smith   if (reuse == MAT_INITIAL_MATRIX || reuse == MAT_INPLACE_MATRIX) {
15049566063dSJacob Faibussowitsch     PetscCall(MatCreate(PetscObjectComm((PetscObject)A), &B));
15059566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(B, A->cmap->n, A->rmap->n, N, M));
15069566063dSJacob Faibussowitsch     PetscCall(MatSetType(B, ((PetscObject)A)->type_name));
15072e72b8d9SBarry Smith     /* Do not know preallocation information, but must set block size */
15089566063dSJacob Faibussowitsch     PetscCall(MatMPIBAIJSetPreallocation(B, A->rmap->bs, PETSC_DECIDE, NULL, PETSC_DECIDE, NULL));
1509fc4dec0aSBarry Smith   } else {
1510fc4dec0aSBarry Smith     B = *matout;
1511fc4dec0aSBarry Smith   }
15120ac07820SSatish Balay 
15130ac07820SSatish Balay   /* copy over the A part */
15140ac07820SSatish Balay   Aloc = (Mat_SeqBAIJ *)baij->A->data;
15159371c9d4SSatish Balay   ai   = Aloc->i;
15169371c9d4SSatish Balay   aj   = Aloc->j;
15179371c9d4SSatish Balay   a    = Aloc->a;
15189566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(bs, &rvals));
15190ac07820SSatish Balay 
15200ac07820SSatish Balay   for (i = 0; i < mbs; i++) {
1521899cda47SBarry Smith     rvals[0] = bs * (baij->rstartbs + i);
152226fbe8dcSKarl Rupp     for (j = 1; j < bs; j++) rvals[j] = rvals[j - 1] + 1;
15230ac07820SSatish Balay     for (j = ai[i]; j < ai[i + 1]; j++) {
1524899cda47SBarry Smith       col = (baij->cstartbs + aj[j]) * bs;
15250ac07820SSatish Balay       for (k = 0; k < bs; k++) {
15269566063dSJacob Faibussowitsch         PetscCall(MatSetValues_MPIBAIJ(B, 1, &col, bs, rvals, a, INSERT_VALUES));
152726fbe8dcSKarl Rupp 
15289371c9d4SSatish Balay         col++;
15299371c9d4SSatish Balay         a += bs;
15300ac07820SSatish Balay       }
15310ac07820SSatish Balay     }
15320ac07820SSatish Balay   }
15330ac07820SSatish Balay   /* copy over the B part */
15340ac07820SSatish Balay   Aloc = (Mat_SeqBAIJ *)baij->B->data;
15359371c9d4SSatish Balay   ai   = Aloc->i;
15369371c9d4SSatish Balay   aj   = Aloc->j;
15379371c9d4SSatish Balay   a    = Aloc->a;
15380ac07820SSatish Balay   for (i = 0; i < mbs; i++) {
1539899cda47SBarry Smith     rvals[0] = bs * (baij->rstartbs + i);
154026fbe8dcSKarl Rupp     for (j = 1; j < bs; j++) rvals[j] = rvals[j - 1] + 1;
15410ac07820SSatish Balay     for (j = ai[i]; j < ai[i + 1]; j++) {
15420ac07820SSatish Balay       col = baij->garray[aj[j]] * bs;
15430ac07820SSatish Balay       for (k = 0; k < bs; k++) {
15449566063dSJacob Faibussowitsch         PetscCall(MatSetValues_MPIBAIJ(B, 1, &col, bs, rvals, a, INSERT_VALUES));
154526fbe8dcSKarl Rupp         col++;
154626fbe8dcSKarl Rupp         a += bs;
15470ac07820SSatish Balay       }
15480ac07820SSatish Balay     }
15490ac07820SSatish Balay   }
15509566063dSJacob Faibussowitsch   PetscCall(PetscFree(rvals));
15519566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY));
15529566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY));
15530ac07820SSatish Balay 
1554cf37664fSBarry Smith   if (reuse == MAT_INITIAL_MATRIX || reuse == MAT_REUSE_MATRIX) *matout = B;
155548a46eb9SPierre Jolivet   else PetscCall(MatHeaderMerge(A, &B));
15563ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
15570ac07820SSatish Balay }
15580e95ebc0SSatish Balay 
155966976f2fSJacob Faibussowitsch static PetscErrorCode MatDiagonalScale_MPIBAIJ(Mat mat, Vec ll, Vec rr)
1560d71ae5a4SJacob Faibussowitsch {
156136c4a09eSSatish Balay   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data;
156236c4a09eSSatish Balay   Mat          a = baij->A, b = baij->B;
1563b24ad042SBarry Smith   PetscInt     s1, s2, s3;
15640e95ebc0SSatish Balay 
1565d64ed03dSBarry Smith   PetscFunctionBegin;
15669566063dSJacob Faibussowitsch   PetscCall(MatGetLocalSize(mat, &s2, &s3));
156736c4a09eSSatish Balay   if (rr) {
15689566063dSJacob Faibussowitsch     PetscCall(VecGetLocalSize(rr, &s1));
15695f80ce2aSJacob Faibussowitsch     PetscCheck(s1 == s3, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "right vector non-conforming local size");
157036c4a09eSSatish Balay     /* Overlap communication with computation. */
15719566063dSJacob Faibussowitsch     PetscCall(VecScatterBegin(baij->Mvctx, rr, baij->lvec, INSERT_VALUES, SCATTER_FORWARD));
157236c4a09eSSatish Balay   }
15730e95ebc0SSatish Balay   if (ll) {
15749566063dSJacob Faibussowitsch     PetscCall(VecGetLocalSize(ll, &s1));
15755f80ce2aSJacob Faibussowitsch     PetscCheck(s1 == s2, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "left vector non-conforming local size");
1576dbbe0bcdSBarry Smith     PetscUseTypeMethod(b, diagonalscale, ll, NULL);
15770e95ebc0SSatish Balay   }
157836c4a09eSSatish Balay   /* scale  the diagonal block */
1579dbbe0bcdSBarry Smith   PetscUseTypeMethod(a, diagonalscale, ll, rr);
158036c4a09eSSatish Balay 
158136c4a09eSSatish Balay   if (rr) {
158236c4a09eSSatish Balay     /* Do a scatter end and then right scale the off-diagonal block */
15839566063dSJacob Faibussowitsch     PetscCall(VecScatterEnd(baij->Mvctx, rr, baij->lvec, INSERT_VALUES, SCATTER_FORWARD));
1584dbbe0bcdSBarry Smith     PetscUseTypeMethod(b, diagonalscale, NULL, baij->lvec);
158536c4a09eSSatish Balay   }
15863ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
15870e95ebc0SSatish Balay }
15880e95ebc0SSatish Balay 
158966976f2fSJacob Faibussowitsch static PetscErrorCode MatZeroRows_MPIBAIJ(Mat A, PetscInt N, const PetscInt rows[], PetscScalar diag, Vec x, Vec b)
1590d71ae5a4SJacob Faibussowitsch {
15910ac07820SSatish Balay   Mat_MPIBAIJ *l = (Mat_MPIBAIJ *)A->data;
159265a92638SMatthew G. Knepley   PetscInt    *lrows;
15936e520ac8SStefano Zampini   PetscInt     r, len;
159494342113SStefano Zampini   PetscBool    cong;
15950ac07820SSatish Balay 
1596d64ed03dSBarry Smith   PetscFunctionBegin;
15976e520ac8SStefano Zampini   /* get locally owned rows */
15989566063dSJacob Faibussowitsch   PetscCall(MatZeroRowsMapLocal_Private(A, N, rows, &len, &lrows));
1599dd8e379bSPierre Jolivet   /* fix right-hand side if needed */
160097b48c8fSBarry Smith   if (x && b) {
160165a92638SMatthew G. Knepley     const PetscScalar *xx;
160265a92638SMatthew G. Knepley     PetscScalar       *bb;
160365a92638SMatthew G. Knepley 
16049566063dSJacob Faibussowitsch     PetscCall(VecGetArrayRead(x, &xx));
16059566063dSJacob Faibussowitsch     PetscCall(VecGetArray(b, &bb));
160665a92638SMatthew G. Knepley     for (r = 0; r < len; ++r) bb[lrows[r]] = diag * xx[lrows[r]];
16079566063dSJacob Faibussowitsch     PetscCall(VecRestoreArrayRead(x, &xx));
16089566063dSJacob Faibussowitsch     PetscCall(VecRestoreArray(b, &bb));
160997b48c8fSBarry Smith   }
161097b48c8fSBarry Smith 
16110ac07820SSatish Balay   /* actually zap the local rows */
161272dacd9aSBarry Smith   /*
161372dacd9aSBarry Smith         Zero the required rows. If the "diagonal block" of the matrix
1614a8c7a070SBarry Smith      is square and the user wishes to set the diagonal we use separate
161572dacd9aSBarry Smith      code so that MatSetValues() is not called for each diagonal allocating
161672dacd9aSBarry Smith      new memory, thus calling lots of mallocs and slowing things down.
161772dacd9aSBarry Smith 
161872dacd9aSBarry Smith   */
16199c957beeSSatish Balay   /* must zero l->B before l->A because the (diag) case below may put values into l->B*/
16209566063dSJacob Faibussowitsch   PetscCall(MatZeroRows_SeqBAIJ(l->B, len, lrows, 0.0, NULL, NULL));
16219566063dSJacob Faibussowitsch   PetscCall(MatHasCongruentLayouts(A, &cong));
162294342113SStefano Zampini   if ((diag != 0.0) && cong) {
16239566063dSJacob Faibussowitsch     PetscCall(MatZeroRows_SeqBAIJ(l->A, len, lrows, diag, NULL, NULL));
1624f4df32b1SMatthew Knepley   } else if (diag != 0.0) {
16259566063dSJacob Faibussowitsch     PetscCall(MatZeroRows_SeqBAIJ(l->A, len, lrows, 0.0, NULL, NULL));
162600045ab3SPierre Jolivet     PetscCheck(!((Mat_SeqBAIJ *)l->A->data)->nonew, PETSC_COMM_SELF, PETSC_ERR_SUP, "MatZeroRows() on rectangular matrices cannot be used with the Mat options MAT_NEW_NONZERO_LOCATIONS, MAT_NEW_NONZERO_LOCATION_ERR, and MAT_NEW_NONZERO_ALLOCATION_ERR");
162765a92638SMatthew G. Knepley     for (r = 0; r < len; ++r) {
162865a92638SMatthew G. Knepley       const PetscInt row = lrows[r] + A->rmap->rstart;
16299566063dSJacob Faibussowitsch       PetscCall(MatSetValues(A, 1, &row, 1, &row, &diag, INSERT_VALUES));
1630a07cd24cSSatish Balay     }
16319566063dSJacob Faibussowitsch     PetscCall(MatAssemblyBegin(A, MAT_FINAL_ASSEMBLY));
16329566063dSJacob Faibussowitsch     PetscCall(MatAssemblyEnd(A, MAT_FINAL_ASSEMBLY));
16339c957beeSSatish Balay   } else {
16349566063dSJacob Faibussowitsch     PetscCall(MatZeroRows_SeqBAIJ(l->A, len, lrows, 0.0, NULL, NULL));
1635a07cd24cSSatish Balay   }
16369566063dSJacob Faibussowitsch   PetscCall(PetscFree(lrows));
16374f9cfa9eSBarry Smith 
16384f9cfa9eSBarry Smith   /* only change matrix nonzero state if pattern was allowed to be changed */
1639f4f49eeaSPierre Jolivet   if (!((Mat_SeqBAIJ *)l->A->data)->keepnonzeropattern || !((Mat_SeqBAIJ *)l->A->data)->nonew) {
1640e56f5c9eSBarry Smith     PetscObjectState state = l->A->nonzerostate + l->B->nonzerostate;
16411c2dc1cbSBarry Smith     PetscCall(MPIU_Allreduce(&state, &A->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)A)));
1642e56f5c9eSBarry Smith   }
16433ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
16440ac07820SSatish Balay }
164572dacd9aSBarry Smith 
164666976f2fSJacob Faibussowitsch static PetscErrorCode MatZeroRowsColumns_MPIBAIJ(Mat A, PetscInt N, const PetscInt rows[], PetscScalar diag, Vec x, Vec b)
1647d71ae5a4SJacob Faibussowitsch {
16486f0a72daSMatthew G. Knepley   Mat_MPIBAIJ       *l = (Mat_MPIBAIJ *)A->data;
1649131c27b5Sprj-   PetscMPIInt        n = A->rmap->n, p = 0;
1650131c27b5Sprj-   PetscInt           i, j, k, r, len = 0, row, col, count;
16516f0a72daSMatthew G. Knepley   PetscInt          *lrows, *owners = A->rmap->range;
16526f0a72daSMatthew G. Knepley   PetscSFNode       *rrows;
16536f0a72daSMatthew G. Knepley   PetscSF            sf;
16546f0a72daSMatthew G. Knepley   const PetscScalar *xx;
16556f0a72daSMatthew G. Knepley   PetscScalar       *bb, *mask;
16566f0a72daSMatthew G. Knepley   Vec                xmask, lmask;
16576f0a72daSMatthew G. Knepley   Mat_SeqBAIJ       *baij = (Mat_SeqBAIJ *)l->B->data;
16586f0a72daSMatthew G. Knepley   PetscInt           bs = A->rmap->bs, bs2 = baij->bs2;
16596f0a72daSMatthew G. Knepley   PetscScalar       *aa;
16606f0a72daSMatthew G. Knepley 
16616f0a72daSMatthew G. Knepley   PetscFunctionBegin;
16626f0a72daSMatthew G. Knepley   /* Create SF where leaves are input rows and roots are owned rows */
16639566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(n, &lrows));
16646f0a72daSMatthew G. Knepley   for (r = 0; r < n; ++r) lrows[r] = -1;
16659566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(N, &rrows));
16666f0a72daSMatthew G. Knepley   for (r = 0; r < N; ++r) {
16676f0a72daSMatthew G. Knepley     const PetscInt idx = rows[r];
16685f80ce2aSJacob Faibussowitsch     PetscCheck(idx >= 0 && A->rmap->N > idx, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row %" PetscInt_FMT " out of range [0,%" PetscInt_FMT ")", idx, A->rmap->N);
16695ba17502SJed Brown     if (idx < owners[p] || owners[p + 1] <= idx) { /* short-circuit the search if the last p owns this row too */
16709566063dSJacob Faibussowitsch       PetscCall(PetscLayoutFindOwner(A->rmap, idx, &p));
16715ba17502SJed Brown     }
16726f0a72daSMatthew G. Knepley     rrows[r].rank  = p;
16736f0a72daSMatthew G. Knepley     rrows[r].index = rows[r] - owners[p];
16746f0a72daSMatthew G. Knepley   }
16759566063dSJacob Faibussowitsch   PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)A), &sf));
16769566063dSJacob Faibussowitsch   PetscCall(PetscSFSetGraph(sf, n, N, NULL, PETSC_OWN_POINTER, rrows, PETSC_OWN_POINTER));
16776f0a72daSMatthew G. Knepley   /* Collect flags for rows to be zeroed */
16789566063dSJacob Faibussowitsch   PetscCall(PetscSFReduceBegin(sf, MPIU_INT, (PetscInt *)rows, lrows, MPI_LOR));
16799566063dSJacob Faibussowitsch   PetscCall(PetscSFReduceEnd(sf, MPIU_INT, (PetscInt *)rows, lrows, MPI_LOR));
16809566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&sf));
16816f0a72daSMatthew G. Knepley   /* Compress and put in row numbers */
16829371c9d4SSatish Balay   for (r = 0; r < n; ++r)
16839371c9d4SSatish Balay     if (lrows[r] >= 0) lrows[len++] = r;
16846f0a72daSMatthew G. Knepley   /* zero diagonal part of matrix */
16859566063dSJacob Faibussowitsch   PetscCall(MatZeroRowsColumns(l->A, len, lrows, diag, x, b));
16864cf0e950SBarry Smith   /* handle off-diagonal part of matrix */
16879566063dSJacob Faibussowitsch   PetscCall(MatCreateVecs(A, &xmask, NULL));
16889566063dSJacob Faibussowitsch   PetscCall(VecDuplicate(l->lvec, &lmask));
16899566063dSJacob Faibussowitsch   PetscCall(VecGetArray(xmask, &bb));
16906f0a72daSMatthew G. Knepley   for (i = 0; i < len; i++) bb[lrows[i]] = 1;
16919566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(xmask, &bb));
16929566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(l->Mvctx, xmask, lmask, ADD_VALUES, SCATTER_FORWARD));
16939566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(l->Mvctx, xmask, lmask, ADD_VALUES, SCATTER_FORWARD));
16949566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&xmask));
16956f0a72daSMatthew G. Knepley   if (x) {
16969566063dSJacob Faibussowitsch     PetscCall(VecScatterBegin(l->Mvctx, x, l->lvec, INSERT_VALUES, SCATTER_FORWARD));
16979566063dSJacob Faibussowitsch     PetscCall(VecScatterEnd(l->Mvctx, x, l->lvec, INSERT_VALUES, SCATTER_FORWARD));
16989566063dSJacob Faibussowitsch     PetscCall(VecGetArrayRead(l->lvec, &xx));
16999566063dSJacob Faibussowitsch     PetscCall(VecGetArray(b, &bb));
17006f0a72daSMatthew G. Knepley   }
17019566063dSJacob Faibussowitsch   PetscCall(VecGetArray(lmask, &mask));
17024cf0e950SBarry Smith   /* remove zeroed rows of off-diagonal matrix */
17036f0a72daSMatthew G. Knepley   for (i = 0; i < len; ++i) {
17046f0a72daSMatthew G. Knepley     row   = lrows[i];
17056f0a72daSMatthew G. Knepley     count = (baij->i[row / bs + 1] - baij->i[row / bs]) * bs;
1706f4f49eeaSPierre Jolivet     aa    = ((MatScalar *)baij->a) + baij->i[row / bs] * bs2 + (row % bs);
17076f0a72daSMatthew G. Knepley     for (k = 0; k < count; ++k) {
17086f0a72daSMatthew G. Knepley       aa[0] = 0.0;
17096f0a72daSMatthew G. Knepley       aa += bs;
17106f0a72daSMatthew G. Knepley     }
17116f0a72daSMatthew G. Knepley   }
17126f0a72daSMatthew G. Knepley   /* loop over all elements of off process part of matrix zeroing removed columns*/
17136f0a72daSMatthew G. Knepley   for (i = 0; i < l->B->rmap->N; ++i) {
17146f0a72daSMatthew G. Knepley     row = i / bs;
17156f0a72daSMatthew G. Knepley     for (j = baij->i[row]; j < baij->i[row + 1]; ++j) {
17166f0a72daSMatthew G. Knepley       for (k = 0; k < bs; ++k) {
17176f0a72daSMatthew G. Knepley         col = bs * baij->j[j] + k;
17186f0a72daSMatthew G. Knepley         if (PetscAbsScalar(mask[col])) {
1719f4f49eeaSPierre Jolivet           aa = ((MatScalar *)baij->a) + j * bs2 + (i % bs) + bs * k;
172089ae1891SBarry Smith           if (x) bb[i] -= aa[0] * xx[col];
17216f0a72daSMatthew G. Knepley           aa[0] = 0.0;
17226f0a72daSMatthew G. Knepley         }
17236f0a72daSMatthew G. Knepley       }
17246f0a72daSMatthew G. Knepley     }
17256f0a72daSMatthew G. Knepley   }
17266f0a72daSMatthew G. Knepley   if (x) {
17279566063dSJacob Faibussowitsch     PetscCall(VecRestoreArray(b, &bb));
17289566063dSJacob Faibussowitsch     PetscCall(VecRestoreArrayRead(l->lvec, &xx));
17296f0a72daSMatthew G. Knepley   }
17309566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(lmask, &mask));
17319566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&lmask));
17329566063dSJacob Faibussowitsch   PetscCall(PetscFree(lrows));
17334f9cfa9eSBarry Smith 
17344f9cfa9eSBarry Smith   /* only change matrix nonzero state if pattern was allowed to be changed */
1735f4f49eeaSPierre Jolivet   if (!((Mat_SeqBAIJ *)l->A->data)->nonew) {
17364f9cfa9eSBarry Smith     PetscObjectState state = l->A->nonzerostate + l->B->nonzerostate;
17371c2dc1cbSBarry Smith     PetscCall(MPIU_Allreduce(&state, &A->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)A)));
17384f9cfa9eSBarry Smith   }
17393ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
17406f0a72daSMatthew G. Knepley }
17416f0a72daSMatthew G. Knepley 
174266976f2fSJacob Faibussowitsch static PetscErrorCode MatSetUnfactored_MPIBAIJ(Mat A)
1743d71ae5a4SJacob Faibussowitsch {
1744bb5a7306SBarry Smith   Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data;
1745d64ed03dSBarry Smith 
1746d64ed03dSBarry Smith   PetscFunctionBegin;
17479566063dSJacob Faibussowitsch   PetscCall(MatSetUnfactored(a->A));
17483ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1749bb5a7306SBarry Smith }
1750bb5a7306SBarry Smith 
17516849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIBAIJ(Mat, MatDuplicateOption, Mat *);
17520ac07820SSatish Balay 
175366976f2fSJacob Faibussowitsch static PetscErrorCode MatEqual_MPIBAIJ(Mat A, Mat B, PetscBool *flag)
1754d71ae5a4SJacob Faibussowitsch {
17557fc3c18eSBarry Smith   Mat_MPIBAIJ *matB = (Mat_MPIBAIJ *)B->data, *matA = (Mat_MPIBAIJ *)A->data;
17567fc3c18eSBarry Smith   Mat          a, b, c, d;
1757ace3abfcSBarry Smith   PetscBool    flg;
17587fc3c18eSBarry Smith 
17597fc3c18eSBarry Smith   PetscFunctionBegin;
17609371c9d4SSatish Balay   a = matA->A;
17619371c9d4SSatish Balay   b = matA->B;
17629371c9d4SSatish Balay   c = matB->A;
17639371c9d4SSatish Balay   d = matB->B;
17647fc3c18eSBarry Smith 
17659566063dSJacob Faibussowitsch   PetscCall(MatEqual(a, c, &flg));
176648a46eb9SPierre Jolivet   if (flg) PetscCall(MatEqual(b, d, &flg));
17671c2dc1cbSBarry Smith   PetscCall(MPIU_Allreduce(&flg, flag, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)A)));
17683ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
17697fc3c18eSBarry Smith }
17707fc3c18eSBarry Smith 
177166976f2fSJacob Faibussowitsch static PetscErrorCode MatCopy_MPIBAIJ(Mat A, Mat B, MatStructure str)
1772d71ae5a4SJacob Faibussowitsch {
17733c896bc6SHong Zhang   Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data;
17743c896bc6SHong Zhang   Mat_MPIBAIJ *b = (Mat_MPIBAIJ *)B->data;
17753c896bc6SHong Zhang 
17763c896bc6SHong Zhang   PetscFunctionBegin;
17773c896bc6SHong Zhang   /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */
17783c896bc6SHong Zhang   if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) {
17799566063dSJacob Faibussowitsch     PetscCall(MatCopy_Basic(A, B, str));
17803c896bc6SHong Zhang   } else {
17819566063dSJacob Faibussowitsch     PetscCall(MatCopy(a->A, b->A, str));
17829566063dSJacob Faibussowitsch     PetscCall(MatCopy(a->B, b->B, str));
17833c896bc6SHong Zhang   }
17849566063dSJacob Faibussowitsch   PetscCall(PetscObjectStateIncrease((PetscObject)B));
17853ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
17863c896bc6SHong Zhang }
1787273d9f13SBarry Smith 
1788d71ae5a4SJacob Faibussowitsch PetscErrorCode MatAXPYGetPreallocation_MPIBAIJ(Mat Y, const PetscInt *yltog, Mat X, const PetscInt *xltog, PetscInt *nnz)
1789d71ae5a4SJacob Faibussowitsch {
1790001ddc4fSHong Zhang   PetscInt     bs = Y->rmap->bs, m = Y->rmap->N / bs;
17914de5dceeSHong Zhang   Mat_SeqBAIJ *x = (Mat_SeqBAIJ *)X->data;
17924de5dceeSHong Zhang   Mat_SeqBAIJ *y = (Mat_SeqBAIJ *)Y->data;
17934de5dceeSHong Zhang 
17944de5dceeSHong Zhang   PetscFunctionBegin;
17959566063dSJacob Faibussowitsch   PetscCall(MatAXPYGetPreallocation_MPIX_private(m, x->i, x->j, xltog, y->i, y->j, yltog, nnz));
17963ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
17974de5dceeSHong Zhang }
17984de5dceeSHong Zhang 
179966976f2fSJacob Faibussowitsch static PetscErrorCode MatAXPY_MPIBAIJ(Mat Y, PetscScalar a, Mat X, MatStructure str)
1800d71ae5a4SJacob Faibussowitsch {
18014fe895cdSHong Zhang   Mat_MPIBAIJ *xx = (Mat_MPIBAIJ *)X->data, *yy = (Mat_MPIBAIJ *)Y->data;
18024fe895cdSHong Zhang   PetscBLASInt bnz, one                         = 1;
18034fe895cdSHong Zhang   Mat_SeqBAIJ *x, *y;
1804b31f67cfSBarry Smith   PetscInt     bs2 = Y->rmap->bs * Y->rmap->bs;
18054fe895cdSHong Zhang 
18064fe895cdSHong Zhang   PetscFunctionBegin;
18074fe895cdSHong Zhang   if (str == SAME_NONZERO_PATTERN) {
18084fe895cdSHong Zhang     PetscScalar alpha = a;
18094fe895cdSHong Zhang     x                 = (Mat_SeqBAIJ *)xx->A->data;
18104fe895cdSHong Zhang     y                 = (Mat_SeqBAIJ *)yy->A->data;
18119566063dSJacob Faibussowitsch     PetscCall(PetscBLASIntCast(x->nz * bs2, &bnz));
1812792fecdfSBarry Smith     PetscCallBLAS("BLASaxpy", BLASaxpy_(&bnz, &alpha, x->a, &one, y->a, &one));
18134fe895cdSHong Zhang     x = (Mat_SeqBAIJ *)xx->B->data;
18144fe895cdSHong Zhang     y = (Mat_SeqBAIJ *)yy->B->data;
18159566063dSJacob Faibussowitsch     PetscCall(PetscBLASIntCast(x->nz * bs2, &bnz));
1816792fecdfSBarry Smith     PetscCallBLAS("BLASaxpy", BLASaxpy_(&bnz, &alpha, x->a, &one, y->a, &one));
18179566063dSJacob Faibussowitsch     PetscCall(PetscObjectStateIncrease((PetscObject)Y));
1818ab784542SHong Zhang   } else if (str == SUBSET_NONZERO_PATTERN) { /* nonzeros of X is a subset of Y's */
18199566063dSJacob Faibussowitsch     PetscCall(MatAXPY_Basic(Y, a, X, str));
18204fe895cdSHong Zhang   } else {
18214de5dceeSHong Zhang     Mat       B;
18224de5dceeSHong Zhang     PetscInt *nnz_d, *nnz_o, bs = Y->rmap->bs;
18239566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(yy->A->rmap->N, &nnz_d));
18249566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(yy->B->rmap->N, &nnz_o));
18259566063dSJacob Faibussowitsch     PetscCall(MatCreate(PetscObjectComm((PetscObject)Y), &B));
18269566063dSJacob Faibussowitsch     PetscCall(PetscObjectSetName((PetscObject)B, ((PetscObject)Y)->name));
18279566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(B, Y->rmap->n, Y->cmap->n, Y->rmap->N, Y->cmap->N));
18289566063dSJacob Faibussowitsch     PetscCall(MatSetBlockSizesFromMats(B, Y, Y));
18299566063dSJacob Faibussowitsch     PetscCall(MatSetType(B, MATMPIBAIJ));
18309566063dSJacob Faibussowitsch     PetscCall(MatAXPYGetPreallocation_SeqBAIJ(yy->A, xx->A, nnz_d));
18319566063dSJacob Faibussowitsch     PetscCall(MatAXPYGetPreallocation_MPIBAIJ(yy->B, yy->garray, xx->B, xx->garray, nnz_o));
18329566063dSJacob Faibussowitsch     PetscCall(MatMPIBAIJSetPreallocation(B, bs, 0, nnz_d, 0, nnz_o));
18334de5dceeSHong Zhang     /* MatAXPY_BasicWithPreallocation() for BAIJ matrix is much slower than AIJ, even for bs=1 ! */
18349566063dSJacob Faibussowitsch     PetscCall(MatAXPY_BasicWithPreallocation(B, Y, a, X, str));
18359566063dSJacob Faibussowitsch     PetscCall(MatHeaderMerge(Y, &B));
18369566063dSJacob Faibussowitsch     PetscCall(PetscFree(nnz_d));
18379566063dSJacob Faibussowitsch     PetscCall(PetscFree(nnz_o));
18384fe895cdSHong Zhang   }
18393ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
18404fe895cdSHong Zhang }
18414fe895cdSHong Zhang 
184266976f2fSJacob Faibussowitsch static PetscErrorCode MatConjugate_MPIBAIJ(Mat mat)
1843d71ae5a4SJacob Faibussowitsch {
18445f80ce2aSJacob Faibussowitsch   PetscFunctionBegin;
18455f80ce2aSJacob Faibussowitsch   if (PetscDefined(USE_COMPLEX)) {
18462726fb6dSPierre Jolivet     Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)mat->data;
18472726fb6dSPierre Jolivet 
18489566063dSJacob Faibussowitsch     PetscCall(MatConjugate_SeqBAIJ(a->A));
18499566063dSJacob Faibussowitsch     PetscCall(MatConjugate_SeqBAIJ(a->B));
18505f80ce2aSJacob Faibussowitsch   }
18513ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
18522726fb6dSPierre Jolivet }
18532726fb6dSPierre Jolivet 
185466976f2fSJacob Faibussowitsch static PetscErrorCode MatRealPart_MPIBAIJ(Mat A)
1855d71ae5a4SJacob Faibussowitsch {
185699cafbc1SBarry Smith   Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data;
185799cafbc1SBarry Smith 
185899cafbc1SBarry Smith   PetscFunctionBegin;
18599566063dSJacob Faibussowitsch   PetscCall(MatRealPart(a->A));
18609566063dSJacob Faibussowitsch   PetscCall(MatRealPart(a->B));
18613ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
186299cafbc1SBarry Smith }
186399cafbc1SBarry Smith 
186466976f2fSJacob Faibussowitsch static PetscErrorCode MatImaginaryPart_MPIBAIJ(Mat A)
1865d71ae5a4SJacob Faibussowitsch {
186699cafbc1SBarry Smith   Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data;
186799cafbc1SBarry Smith 
186899cafbc1SBarry Smith   PetscFunctionBegin;
18699566063dSJacob Faibussowitsch   PetscCall(MatImaginaryPart(a->A));
18709566063dSJacob Faibussowitsch   PetscCall(MatImaginaryPart(a->B));
18713ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
187299cafbc1SBarry Smith }
187399cafbc1SBarry Smith 
187466976f2fSJacob Faibussowitsch static PetscErrorCode MatCreateSubMatrix_MPIBAIJ(Mat mat, IS isrow, IS iscol, MatReuse call, Mat *newmat)
1875d71ae5a4SJacob Faibussowitsch {
18764aa3045dSJed Brown   IS       iscol_local;
18774aa3045dSJed Brown   PetscInt csize;
18784aa3045dSJed Brown 
18794aa3045dSJed Brown   PetscFunctionBegin;
18809566063dSJacob Faibussowitsch   PetscCall(ISGetLocalSize(iscol, &csize));
1881b79d0421SJed Brown   if (call == MAT_REUSE_MATRIX) {
18829566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)*newmat, "ISAllGather", (PetscObject *)&iscol_local));
18835f80ce2aSJacob Faibussowitsch     PetscCheck(iscol_local, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Submatrix passed in was not used before, cannot reuse");
1884b79d0421SJed Brown   } else {
18859566063dSJacob Faibussowitsch     PetscCall(ISAllGather(iscol, &iscol_local));
1886b79d0421SJed Brown   }
1887fdfbdca6SPierre Jolivet   PetscCall(MatCreateSubMatrix_MPIBAIJ_Private(mat, isrow, iscol_local, csize, call, newmat, PETSC_FALSE));
1888b79d0421SJed Brown   if (call == MAT_INITIAL_MATRIX) {
18899566063dSJacob Faibussowitsch     PetscCall(PetscObjectCompose((PetscObject)*newmat, "ISAllGather", (PetscObject)iscol_local));
18909566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&iscol_local));
1891b79d0421SJed Brown   }
18923ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
18934aa3045dSJed Brown }
189417df9f7cSHong Zhang 
189582094794SBarry Smith /*
189682094794SBarry Smith   Not great since it makes two copies of the submatrix, first an SeqBAIJ
189782094794SBarry Smith   in local and then by concatenating the local matrices the end result.
18987dae84e0SHong Zhang   Writing it directly would be much like MatCreateSubMatrices_MPIBAIJ().
18998f46ffcaSHong Zhang   This routine is used for BAIJ and SBAIJ matrices (unfortunate dependency).
190082094794SBarry Smith */
1901fdfbdca6SPierre Jolivet PetscErrorCode MatCreateSubMatrix_MPIBAIJ_Private(Mat mat, IS isrow, IS iscol, PetscInt csize, MatReuse call, Mat *newmat, PetscBool sym)
1902d71ae5a4SJacob Faibussowitsch {
190382094794SBarry Smith   PetscMPIInt  rank, size;
190482094794SBarry Smith   PetscInt     i, m, n, rstart, row, rend, nz, *cwork, j, bs;
1905c9ffca76SHong Zhang   PetscInt    *ii, *jj, nlocal, *dlens, *olens, dlen, olen, jend, mglobal;
190629dcf524SDmitry Karpeev   Mat          M, Mreuse;
190782094794SBarry Smith   MatScalar   *vwork, *aa;
1908ce94432eSBarry Smith   MPI_Comm     comm;
190929dcf524SDmitry Karpeev   IS           isrow_new, iscol_new;
191082094794SBarry Smith   Mat_SeqBAIJ *aij;
191182094794SBarry Smith 
191282094794SBarry Smith   PetscFunctionBegin;
19139566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)mat, &comm));
19149566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(comm, &rank));
19159566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
191629dcf524SDmitry Karpeev   /* The compression and expansion should be avoided. Doesn't point
191729dcf524SDmitry Karpeev      out errors, might change the indices, hence buggey */
19189566063dSJacob Faibussowitsch   PetscCall(ISCompressIndicesGeneral(mat->rmap->N, mat->rmap->n, mat->rmap->bs, 1, &isrow, &isrow_new));
1919864bd19bSPierre Jolivet   if (isrow == iscol) {
1920864bd19bSPierre Jolivet     iscol_new = isrow_new;
1921864bd19bSPierre Jolivet     PetscCall(PetscObjectReference((PetscObject)iscol_new));
1922864bd19bSPierre Jolivet   } else PetscCall(ISCompressIndicesGeneral(mat->cmap->N, mat->cmap->n, mat->cmap->bs, 1, &iscol, &iscol_new));
192382094794SBarry Smith 
192482094794SBarry Smith   if (call == MAT_REUSE_MATRIX) {
19259566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)*newmat, "SubMatrix", (PetscObject *)&Mreuse));
19265f80ce2aSJacob Faibussowitsch     PetscCheck(Mreuse, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Submatrix passed in was not used before, cannot reuse");
1927fdfbdca6SPierre Jolivet     PetscCall(MatCreateSubMatrices_MPIBAIJ_local(mat, 1, &isrow_new, &iscol_new, MAT_REUSE_MATRIX, &Mreuse, sym));
192882094794SBarry Smith   } else {
1929fdfbdca6SPierre Jolivet     PetscCall(MatCreateSubMatrices_MPIBAIJ_local(mat, 1, &isrow_new, &iscol_new, MAT_INITIAL_MATRIX, &Mreuse, sym));
193082094794SBarry Smith   }
19319566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&isrow_new));
19329566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&iscol_new));
193382094794SBarry Smith   /*
193482094794SBarry Smith       m - number of local rows
193582094794SBarry Smith       n - number of columns (same on all processors)
193682094794SBarry Smith       rstart - first row in new global matrix generated
193782094794SBarry Smith   */
19389566063dSJacob Faibussowitsch   PetscCall(MatGetBlockSize(mat, &bs));
19399566063dSJacob Faibussowitsch   PetscCall(MatGetSize(Mreuse, &m, &n));
194082094794SBarry Smith   m = m / bs;
194182094794SBarry Smith   n = n / bs;
194282094794SBarry Smith 
194382094794SBarry Smith   if (call == MAT_INITIAL_MATRIX) {
194482094794SBarry Smith     aij = (Mat_SeqBAIJ *)(Mreuse)->data;
194582094794SBarry Smith     ii  = aij->i;
194682094794SBarry Smith     jj  = aij->j;
194782094794SBarry Smith 
194882094794SBarry Smith     /*
194982094794SBarry Smith         Determine the number of non-zeros in the diagonal and off-diagonal
195082094794SBarry Smith         portions of the matrix in order to do correct preallocation
195182094794SBarry Smith     */
195282094794SBarry Smith 
195382094794SBarry Smith     /* first get start and end of "diagonal" columns */
195482094794SBarry Smith     if (csize == PETSC_DECIDE) {
19559566063dSJacob Faibussowitsch       PetscCall(ISGetSize(isrow, &mglobal));
195682094794SBarry Smith       if (mglobal == n * bs) { /* square matrix */
195782094794SBarry Smith         nlocal = m;
195882094794SBarry Smith       } else {
195982094794SBarry Smith         nlocal = n / size + ((n % size) > rank);
196082094794SBarry Smith       }
196182094794SBarry Smith     } else {
196282094794SBarry Smith       nlocal = csize / bs;
196382094794SBarry Smith     }
19649566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Scan(&nlocal, &rend, 1, MPIU_INT, MPI_SUM, comm));
196582094794SBarry Smith     rstart = rend - nlocal;
1966aed4548fSBarry Smith     PetscCheck(rank != size - 1 || rend == n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Local column sizes %" PetscInt_FMT " do not add up to total number of columns %" PetscInt_FMT, rend, n);
196782094794SBarry Smith 
196882094794SBarry Smith     /* next, compute all the lengths */
19699566063dSJacob Faibussowitsch     PetscCall(PetscMalloc2(m + 1, &dlens, m + 1, &olens));
197082094794SBarry Smith     for (i = 0; i < m; i++) {
197182094794SBarry Smith       jend = ii[i + 1] - ii[i];
197282094794SBarry Smith       olen = 0;
197382094794SBarry Smith       dlen = 0;
197482094794SBarry Smith       for (j = 0; j < jend; j++) {
197582094794SBarry Smith         if (*jj < rstart || *jj >= rend) olen++;
197682094794SBarry Smith         else dlen++;
197782094794SBarry Smith         jj++;
197882094794SBarry Smith       }
197982094794SBarry Smith       olens[i] = olen;
198082094794SBarry Smith       dlens[i] = dlen;
198182094794SBarry Smith     }
19829566063dSJacob Faibussowitsch     PetscCall(MatCreate(comm, &M));
19839566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(M, bs * m, bs * nlocal, PETSC_DECIDE, bs * n));
1984fdfbdca6SPierre Jolivet     PetscCall(MatSetType(M, sym ? ((PetscObject)mat)->type_name : MATMPIBAIJ));
19859566063dSJacob Faibussowitsch     PetscCall(MatMPIBAIJSetPreallocation(M, bs, 0, dlens, 0, olens));
19869566063dSJacob Faibussowitsch     PetscCall(MatMPISBAIJSetPreallocation(M, bs, 0, dlens, 0, olens));
19879566063dSJacob Faibussowitsch     PetscCall(PetscFree2(dlens, olens));
198882094794SBarry Smith   } else {
198982094794SBarry Smith     PetscInt ml, nl;
199082094794SBarry Smith 
199182094794SBarry Smith     M = *newmat;
19929566063dSJacob Faibussowitsch     PetscCall(MatGetLocalSize(M, &ml, &nl));
19935f80ce2aSJacob Faibussowitsch     PetscCheck(ml == m, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Previous matrix must be same size/layout as request");
19949566063dSJacob Faibussowitsch     PetscCall(MatZeroEntries(M));
199582094794SBarry Smith     /*
199682094794SBarry Smith          The next two lines are needed so we may call MatSetValues_MPIAIJ() below directly,
199782094794SBarry Smith        rather than the slower MatSetValues().
199882094794SBarry Smith     */
199982094794SBarry Smith     M->was_assembled = PETSC_TRUE;
200082094794SBarry Smith     M->assembled     = PETSC_FALSE;
200182094794SBarry Smith   }
20029566063dSJacob Faibussowitsch   PetscCall(MatSetOption(M, MAT_ROW_ORIENTED, PETSC_FALSE));
20039566063dSJacob Faibussowitsch   PetscCall(MatGetOwnershipRange(M, &rstart, &rend));
200482094794SBarry Smith   aij = (Mat_SeqBAIJ *)(Mreuse)->data;
200582094794SBarry Smith   ii  = aij->i;
200682094794SBarry Smith   jj  = aij->j;
200782094794SBarry Smith   aa  = aij->a;
200882094794SBarry Smith   for (i = 0; i < m; i++) {
200982094794SBarry Smith     row   = rstart / bs + i;
201082094794SBarry Smith     nz    = ii[i + 1] - ii[i];
20119371c9d4SSatish Balay     cwork = jj;
20128e3a54c0SPierre Jolivet     jj    = PetscSafePointerPlusOffset(jj, nz);
20139371c9d4SSatish Balay     vwork = aa;
20148e3a54c0SPierre Jolivet     aa    = PetscSafePointerPlusOffset(aa, nz * bs * bs);
20159566063dSJacob Faibussowitsch     PetscCall(MatSetValuesBlocked_MPIBAIJ(M, 1, &row, nz, cwork, vwork, INSERT_VALUES));
201682094794SBarry Smith   }
201782094794SBarry Smith 
20189566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(M, MAT_FINAL_ASSEMBLY));
20199566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(M, MAT_FINAL_ASSEMBLY));
202082094794SBarry Smith   *newmat = M;
202182094794SBarry Smith 
202282094794SBarry Smith   /* save submatrix used in processor for next request */
202382094794SBarry Smith   if (call == MAT_INITIAL_MATRIX) {
20249566063dSJacob Faibussowitsch     PetscCall(PetscObjectCompose((PetscObject)M, "SubMatrix", (PetscObject)Mreuse));
20259566063dSJacob Faibussowitsch     PetscCall(PetscObjectDereference((PetscObject)Mreuse));
202682094794SBarry Smith   }
20273ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
202882094794SBarry Smith }
202982094794SBarry Smith 
203066976f2fSJacob Faibussowitsch static PetscErrorCode MatPermute_MPIBAIJ(Mat A, IS rowp, IS colp, Mat *B)
2031d71ae5a4SJacob Faibussowitsch {
203282094794SBarry Smith   MPI_Comm        comm, pcomm;
2033a0a83eb5SRémi Lacroix   PetscInt        clocal_size, nrows;
203482094794SBarry Smith   const PetscInt *rows;
2035dbf0e21dSBarry Smith   PetscMPIInt     size;
2036a0a83eb5SRémi Lacroix   IS              crowp, lcolp;
203782094794SBarry Smith 
203882094794SBarry Smith   PetscFunctionBegin;
20399566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)A, &comm));
204082094794SBarry Smith   /* make a collective version of 'rowp' */
20419566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)rowp, &pcomm));
204282094794SBarry Smith   if (pcomm == comm) {
204382094794SBarry Smith     crowp = rowp;
204482094794SBarry Smith   } else {
20459566063dSJacob Faibussowitsch     PetscCall(ISGetSize(rowp, &nrows));
20469566063dSJacob Faibussowitsch     PetscCall(ISGetIndices(rowp, &rows));
20479566063dSJacob Faibussowitsch     PetscCall(ISCreateGeneral(comm, nrows, rows, PETSC_COPY_VALUES, &crowp));
20489566063dSJacob Faibussowitsch     PetscCall(ISRestoreIndices(rowp, &rows));
204982094794SBarry Smith   }
20509566063dSJacob Faibussowitsch   PetscCall(ISSetPermutation(crowp));
2051a0a83eb5SRémi Lacroix   /* make a local version of 'colp' */
20529566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)colp, &pcomm));
20539566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(pcomm, &size));
2054dbf0e21dSBarry Smith   if (size == 1) {
205582094794SBarry Smith     lcolp = colp;
205682094794SBarry Smith   } else {
20579566063dSJacob Faibussowitsch     PetscCall(ISAllGather(colp, &lcolp));
205882094794SBarry Smith   }
20599566063dSJacob Faibussowitsch   PetscCall(ISSetPermutation(lcolp));
206075f6568bSJed Brown   /* now we just get the submatrix */
20619566063dSJacob Faibussowitsch   PetscCall(MatGetLocalSize(A, NULL, &clocal_size));
2062fdfbdca6SPierre Jolivet   PetscCall(MatCreateSubMatrix_MPIBAIJ_Private(A, crowp, lcolp, clocal_size, MAT_INITIAL_MATRIX, B, PETSC_FALSE));
2063a0a83eb5SRémi Lacroix   /* clean up */
206448a46eb9SPierre Jolivet   if (pcomm != comm) PetscCall(ISDestroy(&crowp));
206548a46eb9SPierre Jolivet   if (size > 1) PetscCall(ISDestroy(&lcolp));
20663ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
206782094794SBarry Smith }
206882094794SBarry Smith 
206966976f2fSJacob Faibussowitsch static PetscErrorCode MatGetGhosts_MPIBAIJ(Mat mat, PetscInt *nghosts, const PetscInt *ghosts[])
2070d71ae5a4SJacob Faibussowitsch {
20718c7482ecSBarry Smith   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data;
20728c7482ecSBarry Smith   Mat_SeqBAIJ *B    = (Mat_SeqBAIJ *)baij->B->data;
20738c7482ecSBarry Smith 
20748c7482ecSBarry Smith   PetscFunctionBegin;
207526fbe8dcSKarl Rupp   if (nghosts) *nghosts = B->nbs;
207626fbe8dcSKarl Rupp   if (ghosts) *ghosts = baij->garray;
20773ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
20788c7482ecSBarry Smith }
20798c7482ecSBarry Smith 
208066976f2fSJacob Faibussowitsch static PetscErrorCode MatGetSeqNonzeroStructure_MPIBAIJ(Mat A, Mat *newmat)
2081d71ae5a4SJacob Faibussowitsch {
2082f6d58c54SBarry Smith   Mat          B;
2083f6d58c54SBarry Smith   Mat_MPIBAIJ *a  = (Mat_MPIBAIJ *)A->data;
2084f6d58c54SBarry Smith   Mat_SeqBAIJ *ad = (Mat_SeqBAIJ *)a->A->data, *bd = (Mat_SeqBAIJ *)a->B->data;
2085f6d58c54SBarry Smith   Mat_SeqAIJ  *b;
2086f4259b30SLisandro Dalcin   PetscMPIInt  size, rank, *recvcounts = NULL, *displs = NULL;
2087f6d58c54SBarry Smith   PetscInt     sendcount, i, *rstarts = A->rmap->range, n, cnt, j, bs = A->rmap->bs;
2088f6d58c54SBarry Smith   PetscInt     m, *garray = a->garray, *lens, *jsendbuf, *a_jsendbuf, *b_jsendbuf;
2089f6d58c54SBarry Smith 
2090f6d58c54SBarry Smith   PetscFunctionBegin;
20919566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)A), &size));
20929566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)A), &rank));
2093f6d58c54SBarry Smith 
20942ef1f0ffSBarry Smith   /*   Tell every processor the number of nonzeros per row  */
20959566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(A->rmap->N / bs, &lens));
2096ad540459SPierre Jolivet   for (i = A->rmap->rstart / bs; i < A->rmap->rend / bs; i++) lens[i] = ad->i[i - A->rmap->rstart / bs + 1] - ad->i[i - A->rmap->rstart / bs] + bd->i[i - A->rmap->rstart / bs + 1] - bd->i[i - A->rmap->rstart / bs];
20979566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(2 * size, &recvcounts));
2098f6d58c54SBarry Smith   displs = recvcounts + size;
2099f6d58c54SBarry Smith   for (i = 0; i < size; i++) {
2100f6d58c54SBarry Smith     recvcounts[i] = A->rmap->range[i + 1] / bs - A->rmap->range[i] / bs;
2101f6d58c54SBarry Smith     displs[i]     = A->rmap->range[i] / bs;
2102f6d58c54SBarry Smith   }
21039566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Allgatherv(MPI_IN_PLACE, 0, MPI_DATATYPE_NULL, lens, recvcounts, displs, MPIU_INT, PetscObjectComm((PetscObject)A)));
21042ef1f0ffSBarry Smith   /* Create the sequential matrix of the same type as the local block diagonal  */
21059566063dSJacob Faibussowitsch   PetscCall(MatCreate(PETSC_COMM_SELF, &B));
21069566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(B, A->rmap->N / bs, A->cmap->N / bs, PETSC_DETERMINE, PETSC_DETERMINE));
21079566063dSJacob Faibussowitsch   PetscCall(MatSetType(B, MATSEQAIJ));
21089566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJSetPreallocation(B, 0, lens));
2109f6d58c54SBarry Smith   b = (Mat_SeqAIJ *)B->data;
2110f6d58c54SBarry Smith 
21112ef1f0ffSBarry Smith   /*     Copy my part of matrix column indices over  */
2112f6d58c54SBarry Smith   sendcount  = ad->nz + bd->nz;
2113f6d58c54SBarry Smith   jsendbuf   = b->j + b->i[rstarts[rank] / bs];
2114f6d58c54SBarry Smith   a_jsendbuf = ad->j;
2115f6d58c54SBarry Smith   b_jsendbuf = bd->j;
2116f6d58c54SBarry Smith   n          = A->rmap->rend / bs - A->rmap->rstart / bs;
2117f6d58c54SBarry Smith   cnt        = 0;
2118f6d58c54SBarry Smith   for (i = 0; i < n; i++) {
2119f6d58c54SBarry Smith     /* put in lower diagonal portion */
2120f6d58c54SBarry Smith     m = bd->i[i + 1] - bd->i[i];
2121f6d58c54SBarry Smith     while (m > 0) {
2122f6d58c54SBarry Smith       /* is it above diagonal (in bd (compressed) numbering) */
2123f6d58c54SBarry Smith       if (garray[*b_jsendbuf] > A->rmap->rstart / bs + i) break;
2124f6d58c54SBarry Smith       jsendbuf[cnt++] = garray[*b_jsendbuf++];
2125f6d58c54SBarry Smith       m--;
2126f6d58c54SBarry Smith     }
2127f6d58c54SBarry Smith 
2128f6d58c54SBarry Smith     /* put in diagonal portion */
2129ad540459SPierre Jolivet     for (j = ad->i[i]; j < ad->i[i + 1]; j++) jsendbuf[cnt++] = A->rmap->rstart / bs + *a_jsendbuf++;
2130f6d58c54SBarry Smith 
2131f6d58c54SBarry Smith     /* put in upper diagonal portion */
2132ad540459SPierre Jolivet     while (m-- > 0) jsendbuf[cnt++] = garray[*b_jsendbuf++];
2133f6d58c54SBarry Smith   }
21345f80ce2aSJacob Faibussowitsch   PetscCheck(cnt == sendcount, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Corrupted PETSc matrix: nz given %" PetscInt_FMT " actual nz %" PetscInt_FMT, sendcount, cnt);
2135f6d58c54SBarry Smith 
21362ef1f0ffSBarry Smith   /*  Gather all column indices to all processors  */
2137f6d58c54SBarry Smith   for (i = 0; i < size; i++) {
2138f6d58c54SBarry Smith     recvcounts[i] = 0;
2139ad540459SPierre Jolivet     for (j = A->rmap->range[i] / bs; j < A->rmap->range[i + 1] / bs; j++) recvcounts[i] += lens[j];
2140f6d58c54SBarry Smith   }
2141f6d58c54SBarry Smith   displs[0] = 0;
2142ad540459SPierre Jolivet   for (i = 1; i < size; i++) displs[i] = displs[i - 1] + recvcounts[i - 1];
21439566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Allgatherv(MPI_IN_PLACE, 0, MPI_DATATYPE_NULL, b->j, recvcounts, displs, MPIU_INT, PetscObjectComm((PetscObject)A)));
21445804573cSPierre Jolivet   /*  Assemble the matrix into usable form (note numerical values not yet set)  */
2145f6d58c54SBarry Smith   /* set the b->ilen (length of each row) values */
21469566063dSJacob Faibussowitsch   PetscCall(PetscArraycpy(b->ilen, lens, A->rmap->N / bs));
2147f6d58c54SBarry Smith   /* set the b->i indices */
2148f6d58c54SBarry Smith   b->i[0] = 0;
2149ad540459SPierre Jolivet   for (i = 1; i <= A->rmap->N / bs; i++) b->i[i] = b->i[i - 1] + lens[i - 1];
21509566063dSJacob Faibussowitsch   PetscCall(PetscFree(lens));
21519566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY));
21529566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY));
21539566063dSJacob Faibussowitsch   PetscCall(PetscFree(recvcounts));
2154f6d58c54SBarry Smith 
2155b94d7dedSBarry Smith   PetscCall(MatPropagateSymmetryOptions(A, B));
2156f6d58c54SBarry Smith   *newmat = B;
21573ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2158f6d58c54SBarry Smith }
2159f6d58c54SBarry Smith 
216066976f2fSJacob Faibussowitsch static PetscErrorCode MatSOR_MPIBAIJ(Mat matin, Vec bb, PetscReal omega, MatSORType flag, PetscReal fshift, PetscInt its, PetscInt lits, Vec xx)
2161d71ae5a4SJacob Faibussowitsch {
2162b1a666ecSBarry Smith   Mat_MPIBAIJ *mat = (Mat_MPIBAIJ *)matin->data;
2163f4259b30SLisandro Dalcin   Vec          bb1 = NULL;
2164b1a666ecSBarry Smith 
2165b1a666ecSBarry Smith   PetscFunctionBegin;
2166b1a666ecSBarry Smith   if (flag == SOR_APPLY_UPPER) {
21679566063dSJacob Faibussowitsch     PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx));
21683ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
2169b1a666ecSBarry Smith   }
2170b1a666ecSBarry Smith 
217148a46eb9SPierre Jolivet   if (its > 1 || ~flag & SOR_ZERO_INITIAL_GUESS) PetscCall(VecDuplicate(bb, &bb1));
21724e980039SJed Brown 
2173b1a666ecSBarry Smith   if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP) {
2174b1a666ecSBarry Smith     if (flag & SOR_ZERO_INITIAL_GUESS) {
21759566063dSJacob Faibussowitsch       PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx));
2176b1a666ecSBarry Smith       its--;
2177b1a666ecSBarry Smith     }
2178b1a666ecSBarry Smith 
2179b1a666ecSBarry Smith     while (its--) {
21809566063dSJacob Faibussowitsch       PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD));
21819566063dSJacob Faibussowitsch       PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD));
2182b1a666ecSBarry Smith 
2183b1a666ecSBarry Smith       /* update rhs: bb1 = bb - B*x */
21849566063dSJacob Faibussowitsch       PetscCall(VecScale(mat->lvec, -1.0));
21859566063dSJacob Faibussowitsch       PetscCall((*mat->B->ops->multadd)(mat->B, mat->lvec, bb, bb1));
2186b1a666ecSBarry Smith 
2187b1a666ecSBarry Smith       /* local sweep */
21889566063dSJacob Faibussowitsch       PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, SOR_SYMMETRIC_SWEEP, fshift, lits, 1, xx));
2189b1a666ecSBarry Smith     }
2190b1a666ecSBarry Smith   } else if (flag & SOR_LOCAL_FORWARD_SWEEP) {
2191b1a666ecSBarry Smith     if (flag & SOR_ZERO_INITIAL_GUESS) {
21929566063dSJacob Faibussowitsch       PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx));
2193b1a666ecSBarry Smith       its--;
2194b1a666ecSBarry Smith     }
2195b1a666ecSBarry Smith     while (its--) {
21969566063dSJacob Faibussowitsch       PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD));
21979566063dSJacob Faibussowitsch       PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD));
2198b1a666ecSBarry Smith 
2199b1a666ecSBarry Smith       /* update rhs: bb1 = bb - B*x */
22009566063dSJacob Faibussowitsch       PetscCall(VecScale(mat->lvec, -1.0));
22019566063dSJacob Faibussowitsch       PetscCall((*mat->B->ops->multadd)(mat->B, mat->lvec, bb, bb1));
2202b1a666ecSBarry Smith 
2203b1a666ecSBarry Smith       /* local sweep */
22049566063dSJacob Faibussowitsch       PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, SOR_FORWARD_SWEEP, fshift, lits, 1, xx));
2205b1a666ecSBarry Smith     }
2206b1a666ecSBarry Smith   } else if (flag & SOR_LOCAL_BACKWARD_SWEEP) {
2207b1a666ecSBarry Smith     if (flag & SOR_ZERO_INITIAL_GUESS) {
22089566063dSJacob Faibussowitsch       PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx));
2209b1a666ecSBarry Smith       its--;
2210b1a666ecSBarry Smith     }
2211b1a666ecSBarry Smith     while (its--) {
22129566063dSJacob Faibussowitsch       PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD));
22139566063dSJacob Faibussowitsch       PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD));
2214b1a666ecSBarry Smith 
2215b1a666ecSBarry Smith       /* update rhs: bb1 = bb - B*x */
22169566063dSJacob Faibussowitsch       PetscCall(VecScale(mat->lvec, -1.0));
22179566063dSJacob Faibussowitsch       PetscCall((*mat->B->ops->multadd)(mat->B, mat->lvec, bb, bb1));
2218b1a666ecSBarry Smith 
2219b1a666ecSBarry Smith       /* local sweep */
22209566063dSJacob Faibussowitsch       PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, SOR_BACKWARD_SWEEP, fshift, lits, 1, xx));
2221b1a666ecSBarry Smith     }
2222ce94432eSBarry Smith   } else SETERRQ(PetscObjectComm((PetscObject)matin), PETSC_ERR_SUP, "Parallel version of SOR requested not supported");
2223b1a666ecSBarry Smith 
22249566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&bb1));
22253ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2226b1a666ecSBarry Smith }
2227b1a666ecSBarry Smith 
222866976f2fSJacob Faibussowitsch static PetscErrorCode MatGetColumnReductions_MPIBAIJ(Mat A, PetscInt type, PetscReal *reductions)
2229d71ae5a4SJacob Faibussowitsch {
223047f7623dSRémi Lacroix   Mat_MPIBAIJ *aij = (Mat_MPIBAIJ *)A->data;
2231a873a8cdSSam Reynolds   PetscInt     m, N, i, *garray = aij->garray;
223247f7623dSRémi Lacroix   PetscInt     ib, jb, bs = A->rmap->bs;
223347f7623dSRémi Lacroix   Mat_SeqBAIJ *a_aij = (Mat_SeqBAIJ *)aij->A->data;
223447f7623dSRémi Lacroix   MatScalar   *a_val = a_aij->a;
223547f7623dSRémi Lacroix   Mat_SeqBAIJ *b_aij = (Mat_SeqBAIJ *)aij->B->data;
223647f7623dSRémi Lacroix   MatScalar   *b_val = b_aij->a;
223747f7623dSRémi Lacroix   PetscReal   *work;
223847f7623dSRémi Lacroix 
223947f7623dSRémi Lacroix   PetscFunctionBegin;
22409566063dSJacob Faibussowitsch   PetscCall(MatGetSize(A, &m, &N));
22419566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(N, &work));
2242857cbf51SRichard Tran Mills   if (type == NORM_2) {
224347f7623dSRémi Lacroix     for (i = a_aij->i[0]; i < a_aij->i[aij->A->rmap->n / bs]; i++) {
224447f7623dSRémi Lacroix       for (jb = 0; jb < bs; jb++) {
224547f7623dSRémi Lacroix         for (ib = 0; ib < bs; ib++) {
224647f7623dSRémi Lacroix           work[A->cmap->rstart + a_aij->j[i] * bs + jb] += PetscAbsScalar(*a_val * *a_val);
224747f7623dSRémi Lacroix           a_val++;
224847f7623dSRémi Lacroix         }
224947f7623dSRémi Lacroix       }
225047f7623dSRémi Lacroix     }
225147f7623dSRémi Lacroix     for (i = b_aij->i[0]; i < b_aij->i[aij->B->rmap->n / bs]; i++) {
225247f7623dSRémi Lacroix       for (jb = 0; jb < bs; jb++) {
225347f7623dSRémi Lacroix         for (ib = 0; ib < bs; ib++) {
225447f7623dSRémi Lacroix           work[garray[b_aij->j[i]] * bs + jb] += PetscAbsScalar(*b_val * *b_val);
225547f7623dSRémi Lacroix           b_val++;
225647f7623dSRémi Lacroix         }
225747f7623dSRémi Lacroix       }
225847f7623dSRémi Lacroix     }
2259857cbf51SRichard Tran Mills   } else if (type == NORM_1) {
226047f7623dSRémi Lacroix     for (i = a_aij->i[0]; i < a_aij->i[aij->A->rmap->n / bs]; i++) {
226147f7623dSRémi Lacroix       for (jb = 0; jb < bs; jb++) {
226247f7623dSRémi Lacroix         for (ib = 0; ib < bs; ib++) {
226347f7623dSRémi Lacroix           work[A->cmap->rstart + a_aij->j[i] * bs + jb] += PetscAbsScalar(*a_val);
226447f7623dSRémi Lacroix           a_val++;
226547f7623dSRémi Lacroix         }
226647f7623dSRémi Lacroix       }
226747f7623dSRémi Lacroix     }
226847f7623dSRémi Lacroix     for (i = b_aij->i[0]; i < b_aij->i[aij->B->rmap->n / bs]; i++) {
226947f7623dSRémi Lacroix       for (jb = 0; jb < bs; jb++) {
227047f7623dSRémi Lacroix         for (ib = 0; ib < bs; ib++) {
227147f7623dSRémi Lacroix           work[garray[b_aij->j[i]] * bs + jb] += PetscAbsScalar(*b_val);
227247f7623dSRémi Lacroix           b_val++;
227347f7623dSRémi Lacroix         }
227447f7623dSRémi Lacroix       }
227547f7623dSRémi Lacroix     }
2276857cbf51SRichard Tran Mills   } else if (type == NORM_INFINITY) {
227747f7623dSRémi Lacroix     for (i = a_aij->i[0]; i < a_aij->i[aij->A->rmap->n / bs]; i++) {
227847f7623dSRémi Lacroix       for (jb = 0; jb < bs; jb++) {
227947f7623dSRémi Lacroix         for (ib = 0; ib < bs; ib++) {
228047f7623dSRémi Lacroix           int col   = A->cmap->rstart + a_aij->j[i] * bs + jb;
228147f7623dSRémi Lacroix           work[col] = PetscMax(PetscAbsScalar(*a_val), work[col]);
228247f7623dSRémi Lacroix           a_val++;
228347f7623dSRémi Lacroix         }
228447f7623dSRémi Lacroix       }
228547f7623dSRémi Lacroix     }
228647f7623dSRémi Lacroix     for (i = b_aij->i[0]; i < b_aij->i[aij->B->rmap->n / bs]; i++) {
228747f7623dSRémi Lacroix       for (jb = 0; jb < bs; jb++) {
228847f7623dSRémi Lacroix         for (ib = 0; ib < bs; ib++) {
228947f7623dSRémi Lacroix           int col   = garray[b_aij->j[i]] * bs + jb;
229047f7623dSRémi Lacroix           work[col] = PetscMax(PetscAbsScalar(*b_val), work[col]);
229147f7623dSRémi Lacroix           b_val++;
229247f7623dSRémi Lacroix         }
229347f7623dSRémi Lacroix       }
229447f7623dSRémi Lacroix     }
2295857cbf51SRichard Tran Mills   } else if (type == REDUCTION_SUM_REALPART || type == REDUCTION_MEAN_REALPART) {
2296a873a8cdSSam Reynolds     for (i = a_aij->i[0]; i < a_aij->i[aij->A->rmap->n / bs]; i++) {
2297a873a8cdSSam Reynolds       for (jb = 0; jb < bs; jb++) {
2298a873a8cdSSam Reynolds         for (ib = 0; ib < bs; ib++) {
2299857cbf51SRichard Tran Mills           work[A->cmap->rstart + a_aij->j[i] * bs + jb] += PetscRealPart(*a_val);
2300a873a8cdSSam Reynolds           a_val++;
2301a873a8cdSSam Reynolds         }
2302a873a8cdSSam Reynolds       }
2303a873a8cdSSam Reynolds     }
2304a873a8cdSSam Reynolds     for (i = b_aij->i[0]; i < b_aij->i[aij->B->rmap->n / bs]; i++) {
2305a873a8cdSSam Reynolds       for (jb = 0; jb < bs; jb++) {
2306a873a8cdSSam Reynolds         for (ib = 0; ib < bs; ib++) {
2307857cbf51SRichard Tran Mills           work[garray[b_aij->j[i]] * bs + jb] += PetscRealPart(*b_val);
2308a873a8cdSSam Reynolds           b_val++;
2309a873a8cdSSam Reynolds         }
2310a873a8cdSSam Reynolds       }
2311a873a8cdSSam Reynolds     }
2312857cbf51SRichard Tran Mills   } else if (type == REDUCTION_SUM_IMAGINARYPART || type == REDUCTION_MEAN_IMAGINARYPART) {
2313857cbf51SRichard Tran Mills     for (i = a_aij->i[0]; i < a_aij->i[aij->A->rmap->n / bs]; i++) {
2314857cbf51SRichard Tran Mills       for (jb = 0; jb < bs; jb++) {
2315857cbf51SRichard Tran Mills         for (ib = 0; ib < bs; ib++) {
2316857cbf51SRichard Tran Mills           work[A->cmap->rstart + a_aij->j[i] * bs + jb] += PetscImaginaryPart(*a_val);
2317857cbf51SRichard Tran Mills           a_val++;
2318857cbf51SRichard Tran Mills         }
2319857cbf51SRichard Tran Mills       }
2320857cbf51SRichard Tran Mills     }
2321857cbf51SRichard Tran Mills     for (i = b_aij->i[0]; i < b_aij->i[aij->B->rmap->n / bs]; i++) {
2322857cbf51SRichard Tran Mills       for (jb = 0; jb < bs; jb++) {
2323857cbf51SRichard Tran Mills         for (ib = 0; ib < bs; ib++) {
2324857cbf51SRichard Tran Mills           work[garray[b_aij->j[i]] * bs + jb] += PetscImaginaryPart(*b_val);
2325857cbf51SRichard Tran Mills           b_val++;
2326857cbf51SRichard Tran Mills         }
2327857cbf51SRichard Tran Mills       }
2328857cbf51SRichard Tran Mills     }
2329857cbf51SRichard Tran Mills   } else SETERRQ(PetscObjectComm((PetscObject)A), PETSC_ERR_ARG_WRONG, "Unknown reduction type");
2330857cbf51SRichard Tran Mills   if (type == NORM_INFINITY) {
23311c2dc1cbSBarry Smith     PetscCall(MPIU_Allreduce(work, reductions, N, MPIU_REAL, MPIU_MAX, PetscObjectComm((PetscObject)A)));
233247f7623dSRémi Lacroix   } else {
23331c2dc1cbSBarry Smith     PetscCall(MPIU_Allreduce(work, reductions, N, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)A)));
233447f7623dSRémi Lacroix   }
23359566063dSJacob Faibussowitsch   PetscCall(PetscFree(work));
2336857cbf51SRichard Tran Mills   if (type == NORM_2) {
2337a873a8cdSSam Reynolds     for (i = 0; i < N; i++) reductions[i] = PetscSqrtReal(reductions[i]);
2338857cbf51SRichard Tran Mills   } else if (type == REDUCTION_MEAN_REALPART || type == REDUCTION_MEAN_IMAGINARYPART) {
2339a873a8cdSSam Reynolds     for (i = 0; i < N; i++) reductions[i] /= m;
234047f7623dSRémi Lacroix   }
23413ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
234247f7623dSRémi Lacroix }
234347f7623dSRémi Lacroix 
234466976f2fSJacob Faibussowitsch static PetscErrorCode MatInvertBlockDiagonal_MPIBAIJ(Mat A, const PetscScalar **values)
2345d71ae5a4SJacob Faibussowitsch {
2346bbead8a2SBarry Smith   Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data;
2347bbead8a2SBarry Smith 
2348bbead8a2SBarry Smith   PetscFunctionBegin;
23499566063dSJacob Faibussowitsch   PetscCall(MatInvertBlockDiagonal(a->A, values));
23507b6c816cSBarry Smith   A->factorerrortype             = a->A->factorerrortype;
23517b6c816cSBarry Smith   A->factorerror_zeropivot_value = a->A->factorerror_zeropivot_value;
23527b6c816cSBarry Smith   A->factorerror_zeropivot_row   = a->A->factorerror_zeropivot_row;
23533ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2354bbead8a2SBarry Smith }
2355bbead8a2SBarry Smith 
235666976f2fSJacob Faibussowitsch static PetscErrorCode MatShift_MPIBAIJ(Mat Y, PetscScalar a)
2357d71ae5a4SJacob Faibussowitsch {
23587d68702bSBarry Smith   Mat_MPIBAIJ *maij = (Mat_MPIBAIJ *)Y->data;
23596f33a894SBarry Smith   Mat_SeqBAIJ *aij  = (Mat_SeqBAIJ *)maij->A->data;
23607d68702bSBarry Smith 
23617d68702bSBarry Smith   PetscFunctionBegin;
23626f33a894SBarry Smith   if (!Y->preallocated) {
23639566063dSJacob Faibussowitsch     PetscCall(MatMPIBAIJSetPreallocation(Y, Y->rmap->bs, 1, NULL, 0, NULL));
23646f33a894SBarry Smith   } else if (!aij->nz) {
2365b83222d8SBarry Smith     PetscInt nonew = aij->nonew;
23669566063dSJacob Faibussowitsch     PetscCall(MatSeqBAIJSetPreallocation(maij->A, Y->rmap->bs, 1, NULL));
2367b83222d8SBarry Smith     aij->nonew = nonew;
23687d68702bSBarry Smith   }
23699566063dSJacob Faibussowitsch   PetscCall(MatShift_Basic(Y, a));
23703ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
23717d68702bSBarry Smith }
23728c7482ecSBarry Smith 
237366976f2fSJacob Faibussowitsch static PetscErrorCode MatMissingDiagonal_MPIBAIJ(Mat A, PetscBool *missing, PetscInt *d)
2374d71ae5a4SJacob Faibussowitsch {
23753b49f96aSBarry Smith   Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data;
23763b49f96aSBarry Smith 
23773b49f96aSBarry Smith   PetscFunctionBegin;
23785f80ce2aSJacob Faibussowitsch   PetscCheck(A->rmap->n == A->cmap->n, PETSC_COMM_SELF, PETSC_ERR_SUP, "Only works for square matrices");
23799566063dSJacob Faibussowitsch   PetscCall(MatMissingDiagonal(a->A, missing, d));
23803b49f96aSBarry Smith   if (d) {
23813b49f96aSBarry Smith     PetscInt rstart;
23829566063dSJacob Faibussowitsch     PetscCall(MatGetOwnershipRange(A, &rstart, NULL));
23833b49f96aSBarry Smith     *d += rstart / A->rmap->bs;
23843b49f96aSBarry Smith   }
23853ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
23863b49f96aSBarry Smith }
23873b49f96aSBarry Smith 
238866976f2fSJacob Faibussowitsch static PetscErrorCode MatGetDiagonalBlock_MPIBAIJ(Mat A, Mat *a)
2389d71ae5a4SJacob Faibussowitsch {
2390a5b7ff6bSBarry Smith   PetscFunctionBegin;
2391a5b7ff6bSBarry Smith   *a = ((Mat_MPIBAIJ *)A->data)->A;
23923ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2393a5b7ff6bSBarry Smith }
2394a5b7ff6bSBarry Smith 
239517ea310bSPierre Jolivet static PetscErrorCode MatEliminateZeros_MPIBAIJ(Mat A, PetscBool keep)
239617ea310bSPierre Jolivet {
239717ea310bSPierre Jolivet   Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data;
239817ea310bSPierre Jolivet 
239917ea310bSPierre Jolivet   PetscFunctionBegin;
240017ea310bSPierre Jolivet   PetscCall(MatEliminateZeros_SeqBAIJ(a->A, keep));        // possibly keep zero diagonal coefficients
240117ea310bSPierre Jolivet   PetscCall(MatEliminateZeros_SeqBAIJ(a->B, PETSC_FALSE)); // never keep zero diagonal coefficients
240217ea310bSPierre Jolivet   PetscFunctionReturn(PETSC_SUCCESS);
240317ea310bSPierre Jolivet }
240417ea310bSPierre Jolivet 
24053964eb88SJed Brown static struct _MatOps MatOps_Values = {MatSetValues_MPIBAIJ,
2406cc2dc46cSBarry Smith                                        MatGetRow_MPIBAIJ,
2407cc2dc46cSBarry Smith                                        MatRestoreRow_MPIBAIJ,
2408cc2dc46cSBarry Smith                                        MatMult_MPIBAIJ,
240997304618SKris Buschelman                                        /* 4*/ MatMultAdd_MPIBAIJ,
24107c922b88SBarry Smith                                        MatMultTranspose_MPIBAIJ,
24117c922b88SBarry Smith                                        MatMultTransposeAdd_MPIBAIJ,
2412f4259b30SLisandro Dalcin                                        NULL,
2413f4259b30SLisandro Dalcin                                        NULL,
2414f4259b30SLisandro Dalcin                                        NULL,
2415f4259b30SLisandro Dalcin                                        /*10*/ NULL,
2416f4259b30SLisandro Dalcin                                        NULL,
2417f4259b30SLisandro Dalcin                                        NULL,
2418b1a666ecSBarry Smith                                        MatSOR_MPIBAIJ,
2419cc2dc46cSBarry Smith                                        MatTranspose_MPIBAIJ,
242097304618SKris Buschelman                                        /*15*/ MatGetInfo_MPIBAIJ,
24217fc3c18eSBarry Smith                                        MatEqual_MPIBAIJ,
2422cc2dc46cSBarry Smith                                        MatGetDiagonal_MPIBAIJ,
2423cc2dc46cSBarry Smith                                        MatDiagonalScale_MPIBAIJ,
2424cc2dc46cSBarry Smith                                        MatNorm_MPIBAIJ,
242597304618SKris Buschelman                                        /*20*/ MatAssemblyBegin_MPIBAIJ,
2426cc2dc46cSBarry Smith                                        MatAssemblyEnd_MPIBAIJ,
2427cc2dc46cSBarry Smith                                        MatSetOption_MPIBAIJ,
2428cc2dc46cSBarry Smith                                        MatZeroEntries_MPIBAIJ,
2429d519adbfSMatthew Knepley                                        /*24*/ MatZeroRows_MPIBAIJ,
2430f4259b30SLisandro Dalcin                                        NULL,
2431f4259b30SLisandro Dalcin                                        NULL,
2432f4259b30SLisandro Dalcin                                        NULL,
2433f4259b30SLisandro Dalcin                                        NULL,
243426cec326SBarry Smith                                        /*29*/ MatSetUp_MPI_Hash,
2435f4259b30SLisandro Dalcin                                        NULL,
2436f4259b30SLisandro Dalcin                                        NULL,
2437a5b7ff6bSBarry Smith                                        MatGetDiagonalBlock_MPIBAIJ,
2438f4259b30SLisandro Dalcin                                        NULL,
2439d519adbfSMatthew Knepley                                        /*34*/ MatDuplicate_MPIBAIJ,
2440f4259b30SLisandro Dalcin                                        NULL,
2441f4259b30SLisandro Dalcin                                        NULL,
2442f4259b30SLisandro Dalcin                                        NULL,
2443f4259b30SLisandro Dalcin                                        NULL,
2444d519adbfSMatthew Knepley                                        /*39*/ MatAXPY_MPIBAIJ,
24457dae84e0SHong Zhang                                        MatCreateSubMatrices_MPIBAIJ,
2446cc2dc46cSBarry Smith                                        MatIncreaseOverlap_MPIBAIJ,
2447cc2dc46cSBarry Smith                                        MatGetValues_MPIBAIJ,
24483c896bc6SHong Zhang                                        MatCopy_MPIBAIJ,
2449f4259b30SLisandro Dalcin                                        /*44*/ NULL,
2450cc2dc46cSBarry Smith                                        MatScale_MPIBAIJ,
24517d68702bSBarry Smith                                        MatShift_MPIBAIJ,
2452f4259b30SLisandro Dalcin                                        NULL,
24536f0a72daSMatthew G. Knepley                                        MatZeroRowsColumns_MPIBAIJ,
2454f4259b30SLisandro Dalcin                                        /*49*/ NULL,
2455f4259b30SLisandro Dalcin                                        NULL,
2456f4259b30SLisandro Dalcin                                        NULL,
2457f4259b30SLisandro Dalcin                                        NULL,
2458f4259b30SLisandro Dalcin                                        NULL,
245993dfae19SHong Zhang                                        /*54*/ MatFDColoringCreate_MPIXAIJ,
2460f4259b30SLisandro Dalcin                                        NULL,
2461cc2dc46cSBarry Smith                                        MatSetUnfactored_MPIBAIJ,
246282094794SBarry Smith                                        MatPermute_MPIBAIJ,
2463cc2dc46cSBarry Smith                                        MatSetValuesBlocked_MPIBAIJ,
24647dae84e0SHong Zhang                                        /*59*/ MatCreateSubMatrix_MPIBAIJ,
2465f14a1c24SBarry Smith                                        MatDestroy_MPIBAIJ,
2466f14a1c24SBarry Smith                                        MatView_MPIBAIJ,
2467f4259b30SLisandro Dalcin                                        NULL,
2468f4259b30SLisandro Dalcin                                        NULL,
2469f4259b30SLisandro Dalcin                                        /*64*/ NULL,
2470f4259b30SLisandro Dalcin                                        NULL,
2471f4259b30SLisandro Dalcin                                        NULL,
2472f4259b30SLisandro Dalcin                                        NULL,
2473f4259b30SLisandro Dalcin                                        NULL,
2474d519adbfSMatthew Knepley                                        /*69*/ MatGetRowMaxAbs_MPIBAIJ,
2475f4259b30SLisandro Dalcin                                        NULL,
2476f4259b30SLisandro Dalcin                                        NULL,
2477f4259b30SLisandro Dalcin                                        NULL,
2478f4259b30SLisandro Dalcin                                        NULL,
2479f4259b30SLisandro Dalcin                                        /*74*/ NULL,
2480f6d58c54SBarry Smith                                        MatFDColoringApply_BAIJ,
2481f4259b30SLisandro Dalcin                                        NULL,
2482f4259b30SLisandro Dalcin                                        NULL,
2483f4259b30SLisandro Dalcin                                        NULL,
2484f4259b30SLisandro Dalcin                                        /*79*/ NULL,
2485f4259b30SLisandro Dalcin                                        NULL,
2486f4259b30SLisandro Dalcin                                        NULL,
2487f4259b30SLisandro Dalcin                                        NULL,
24885bba2384SShri Abhyankar                                        MatLoad_MPIBAIJ,
2489f4259b30SLisandro Dalcin                                        /*84*/ NULL,
2490f4259b30SLisandro Dalcin                                        NULL,
2491f4259b30SLisandro Dalcin                                        NULL,
2492f4259b30SLisandro Dalcin                                        NULL,
2493f4259b30SLisandro Dalcin                                        NULL,
2494f4259b30SLisandro Dalcin                                        /*89*/ NULL,
2495f4259b30SLisandro Dalcin                                        NULL,
2496f4259b30SLisandro Dalcin                                        NULL,
2497f4259b30SLisandro Dalcin                                        NULL,
2498f4259b30SLisandro Dalcin                                        NULL,
2499f4259b30SLisandro Dalcin                                        /*94*/ NULL,
2500f4259b30SLisandro Dalcin                                        NULL,
2501f4259b30SLisandro Dalcin                                        NULL,
2502f4259b30SLisandro Dalcin                                        NULL,
2503f4259b30SLisandro Dalcin                                        NULL,
2504f4259b30SLisandro Dalcin                                        /*99*/ NULL,
2505f4259b30SLisandro Dalcin                                        NULL,
2506f4259b30SLisandro Dalcin                                        NULL,
25072726fb6dSPierre Jolivet                                        MatConjugate_MPIBAIJ,
2508f4259b30SLisandro Dalcin                                        NULL,
2509f4259b30SLisandro Dalcin                                        /*104*/ NULL,
251099cafbc1SBarry Smith                                        MatRealPart_MPIBAIJ,
25118c7482ecSBarry Smith                                        MatImaginaryPart_MPIBAIJ,
2512f4259b30SLisandro Dalcin                                        NULL,
2513f4259b30SLisandro Dalcin                                        NULL,
2514f4259b30SLisandro Dalcin                                        /*109*/ NULL,
2515f4259b30SLisandro Dalcin                                        NULL,
2516f4259b30SLisandro Dalcin                                        NULL,
2517f4259b30SLisandro Dalcin                                        NULL,
25183b49f96aSBarry Smith                                        MatMissingDiagonal_MPIBAIJ,
2519d1adec66SJed Brown                                        /*114*/ MatGetSeqNonzeroStructure_MPIBAIJ,
2520f4259b30SLisandro Dalcin                                        NULL,
25214683f7a4SShri Abhyankar                                        MatGetGhosts_MPIBAIJ,
2522f4259b30SLisandro Dalcin                                        NULL,
2523f4259b30SLisandro Dalcin                                        NULL,
2524f4259b30SLisandro Dalcin                                        /*119*/ NULL,
2525f4259b30SLisandro Dalcin                                        NULL,
2526f4259b30SLisandro Dalcin                                        NULL,
2527f4259b30SLisandro Dalcin                                        NULL,
2528e8271787SHong Zhang                                        MatGetMultiProcBlock_MPIBAIJ,
2529f4259b30SLisandro Dalcin                                        /*124*/ NULL,
2530a873a8cdSSam Reynolds                                        MatGetColumnReductions_MPIBAIJ,
25313964eb88SJed Brown                                        MatInvertBlockDiagonal_MPIBAIJ,
2532f4259b30SLisandro Dalcin                                        NULL,
2533f4259b30SLisandro Dalcin                                        NULL,
2534f4259b30SLisandro Dalcin                                        /*129*/ NULL,
2535f4259b30SLisandro Dalcin                                        NULL,
2536f4259b30SLisandro Dalcin                                        NULL,
2537f4259b30SLisandro Dalcin                                        NULL,
2538f4259b30SLisandro Dalcin                                        NULL,
2539f4259b30SLisandro Dalcin                                        /*134*/ NULL,
2540f4259b30SLisandro Dalcin                                        NULL,
2541f4259b30SLisandro Dalcin                                        NULL,
2542f4259b30SLisandro Dalcin                                        NULL,
2543f4259b30SLisandro Dalcin                                        NULL,
254446533700Sstefano_zampini                                        /*139*/ MatSetBlockSizes_Default,
2545f4259b30SLisandro Dalcin                                        NULL,
2546f4259b30SLisandro Dalcin                                        NULL,
2547bdf6f3fcSHong Zhang                                        MatFDColoringSetUp_MPIXAIJ,
2548f4259b30SLisandro Dalcin                                        NULL,
2549d70f29a3SPierre Jolivet                                        /*144*/ MatCreateMPIMatConcatenateSeqMat_MPIBAIJ,
2550d70f29a3SPierre Jolivet                                        NULL,
2551d70f29a3SPierre Jolivet                                        NULL,
255299a7f59eSMark Adams                                        NULL,
255399a7f59eSMark Adams                                        NULL,
25547fb60732SBarry Smith                                        NULL,
2555dec0b466SHong Zhang                                        /*150*/ NULL,
2556eede4a3fSMark Adams                                        MatEliminateZeros_MPIBAIJ,
2557eede4a3fSMark Adams                                        NULL};
255879bdfe76SSatish Balay 
2559cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIBAIJ_MPISBAIJ(Mat, MatType, MatReuse, Mat *);
2560c9225affSStefano Zampini PETSC_INTERN PetscErrorCode MatConvert_XAIJ_IS(Mat, MatType, MatReuse, Mat *);
2561d94109b8SHong Zhang 
256266976f2fSJacob Faibussowitsch static PetscErrorCode MatMPIBAIJSetPreallocationCSR_MPIBAIJ(Mat B, PetscInt bs, const PetscInt ii[], const PetscInt jj[], const PetscScalar V[])
2563d71ae5a4SJacob Faibussowitsch {
2564b8d659d7SLisandro Dalcin   PetscInt        m, rstart, cstart, cend;
2565f4259b30SLisandro Dalcin   PetscInt        i, j, dlen, olen, nz, nz_max = 0, *d_nnz = NULL, *o_nnz = NULL;
2566f4259b30SLisandro Dalcin   const PetscInt *JJ          = NULL;
2567f4259b30SLisandro Dalcin   PetscScalar    *values      = NULL;
2568d47bf9aaSJed Brown   PetscBool       roworiented = ((Mat_MPIBAIJ *)B->data)->roworiented;
25693bd0feecSPierre Jolivet   PetscBool       nooffprocentries;
2570aac34f13SBarry Smith 
2571aac34f13SBarry Smith   PetscFunctionBegin;
25729566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetBlockSize(B->rmap, bs));
25739566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetBlockSize(B->cmap, bs));
25749566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(B->rmap));
25759566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(B->cmap));
25769566063dSJacob Faibussowitsch   PetscCall(PetscLayoutGetBlockSize(B->rmap, &bs));
2577d0f46423SBarry Smith   m      = B->rmap->n / bs;
2578d0f46423SBarry Smith   rstart = B->rmap->rstart / bs;
2579d0f46423SBarry Smith   cstart = B->cmap->rstart / bs;
2580d0f46423SBarry Smith   cend   = B->cmap->rend / bs;
2581b8d659d7SLisandro Dalcin 
25825f80ce2aSJacob Faibussowitsch   PetscCheck(!ii[0], PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "ii[0] must be 0 but it is %" PetscInt_FMT, ii[0]);
25839566063dSJacob Faibussowitsch   PetscCall(PetscMalloc2(m, &d_nnz, m, &o_nnz));
2584aac34f13SBarry Smith   for (i = 0; i < m; i++) {
2585cf12db73SBarry Smith     nz = ii[i + 1] - ii[i];
25865f80ce2aSJacob Faibussowitsch     PetscCheck(nz >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Local row %" PetscInt_FMT " has a negative number of columns %" PetscInt_FMT, i, nz);
2587b8d659d7SLisandro Dalcin     nz_max = PetscMax(nz_max, nz);
258837cd3c0dSBarry Smith     dlen   = 0;
258937cd3c0dSBarry Smith     olen   = 0;
2590cf12db73SBarry Smith     JJ     = jj + ii[i];
2591b8d659d7SLisandro Dalcin     for (j = 0; j < nz; j++) {
259237cd3c0dSBarry Smith       if (*JJ < cstart || *JJ >= cend) olen++;
259337cd3c0dSBarry Smith       else dlen++;
2594aac34f13SBarry Smith       JJ++;
2595aac34f13SBarry Smith     }
259637cd3c0dSBarry Smith     d_nnz[i] = dlen;
259737cd3c0dSBarry Smith     o_nnz[i] = olen;
2598aac34f13SBarry Smith   }
25999566063dSJacob Faibussowitsch   PetscCall(MatMPIBAIJSetPreallocation(B, bs, 0, d_nnz, 0, o_nnz));
26009566063dSJacob Faibussowitsch   PetscCall(PetscFree2(d_nnz, o_nnz));
2601aac34f13SBarry Smith 
2602b8d659d7SLisandro Dalcin   values = (PetscScalar *)V;
260348a46eb9SPierre Jolivet   if (!values) PetscCall(PetscCalloc1(bs * bs * nz_max, &values));
2604b8d659d7SLisandro Dalcin   for (i = 0; i < m; i++) {
2605b8d659d7SLisandro Dalcin     PetscInt        row   = i + rstart;
2606cf12db73SBarry Smith     PetscInt        ncols = ii[i + 1] - ii[i];
2607cf12db73SBarry Smith     const PetscInt *icols = jj + ii[i];
2608bb80cfbbSStefano Zampini     if (bs == 1 || !roworiented) { /* block ordering matches the non-nested layout of MatSetValues so we can insert entire rows */
2609cf12db73SBarry Smith       const PetscScalar *svals = values + (V ? (bs * bs * ii[i]) : 0);
26109566063dSJacob Faibussowitsch       PetscCall(MatSetValuesBlocked_MPIBAIJ(B, 1, &row, ncols, icols, svals, INSERT_VALUES));
26113adadaf3SJed Brown     } else { /* block ordering does not match so we can only insert one block at a time. */
26123adadaf3SJed Brown       PetscInt j;
26133adadaf3SJed Brown       for (j = 0; j < ncols; j++) {
26143adadaf3SJed Brown         const PetscScalar *svals = values + (V ? (bs * bs * (ii[i] + j)) : 0);
26159566063dSJacob Faibussowitsch         PetscCall(MatSetValuesBlocked_MPIBAIJ(B, 1, &row, 1, &icols[j], svals, INSERT_VALUES));
26163adadaf3SJed Brown       }
26173adadaf3SJed Brown     }
2618aac34f13SBarry Smith   }
2619aac34f13SBarry Smith 
26209566063dSJacob Faibussowitsch   if (!V) PetscCall(PetscFree(values));
26213bd0feecSPierre Jolivet   nooffprocentries    = B->nooffprocentries;
26223bd0feecSPierre Jolivet   B->nooffprocentries = PETSC_TRUE;
26239566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY));
26249566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY));
26253bd0feecSPierre Jolivet   B->nooffprocentries = nooffprocentries;
26263bd0feecSPierre Jolivet 
26279566063dSJacob Faibussowitsch   PetscCall(MatSetOption(B, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE));
26283ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2629aac34f13SBarry Smith }
2630aac34f13SBarry Smith 
2631aac34f13SBarry Smith /*@C
263211a5261eSBarry Smith   MatMPIBAIJSetPreallocationCSR - Creates a sparse parallel matrix in `MATBAIJ` format using the given nonzero structure and (optional) numerical values
2633aac34f13SBarry Smith 
2634d083f849SBarry Smith   Collective
2635aac34f13SBarry Smith 
2636aac34f13SBarry Smith   Input Parameters:
26371c4f3114SJed Brown + B  - the matrix
2638dfb205c3SBarry Smith . bs - the block size
263920f4b53cSBarry Smith . i  - the indices into `j` for the start of each local row (starts with zero)
2640aac34f13SBarry Smith . j  - the column indices for each local row (starts with zero) these must be sorted for each row
2641d8a51d2aSBarry Smith - v  - optional values in the matrix, use `NULL` if not provided
2642aac34f13SBarry Smith 
2643664954b6SBarry Smith   Level: advanced
2644aac34f13SBarry Smith 
264595452b02SPatrick Sanan   Notes:
2646d8a51d2aSBarry Smith   The `i`, `j`, and `v` arrays ARE copied by this routine into the internal format used by PETSc;
2647d8a51d2aSBarry Smith   thus you CANNOT change the matrix entries by changing the values of `v` after you have
2648d8a51d2aSBarry Smith   called this routine.
2649d8a51d2aSBarry Smith 
265011a5261eSBarry Smith   The order of the entries in values is specified by the `MatOption` `MAT_ROW_ORIENTED`.  For example, C programs
265111a5261eSBarry Smith   may want to use the default `MAT_ROW_ORIENTED` with value `PETSC_TRUE` and use an array v[nnz][bs][bs] where the second index is
26523adadaf3SJed Brown   over rows within a block and the last index is over columns within a block row.  Fortran programs will likely set
265311a5261eSBarry Smith   `MAT_ROW_ORIENTED` with value `PETSC_FALSE` and use a Fortran array v(bs,bs,nnz) in which the first index is over rows within a
26543adadaf3SJed Brown   block column and the second index is over columns within a block.
26553adadaf3SJed Brown 
2656664954b6SBarry Smith   Though this routine has Preallocation() in the name it also sets the exact nonzero locations of the matrix entries and usually the numerical values as well
2657664954b6SBarry Smith 
26587d2c085eSPierre Jolivet .seealso: `Mat`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIBAIJSetPreallocation()`, `MatCreateAIJ()`, `MATMPIAIJ`, `MatCreateMPIBAIJWithArrays()`, `MATMPIBAIJ`
2659aac34f13SBarry Smith @*/
2660d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIBAIJSetPreallocationCSR(Mat B, PetscInt bs, const PetscInt i[], const PetscInt j[], const PetscScalar v[])
2661d71ae5a4SJacob Faibussowitsch {
2662aac34f13SBarry Smith   PetscFunctionBegin;
26636ba663aaSJed Brown   PetscValidHeaderSpecific(B, MAT_CLASSID, 1);
26646ba663aaSJed Brown   PetscValidType(B, 1);
26656ba663aaSJed Brown   PetscValidLogicalCollectiveInt(B, bs, 2);
2666cac4c232SBarry Smith   PetscTryMethod(B, "MatMPIBAIJSetPreallocationCSR_C", (Mat, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[]), (B, bs, i, j, v));
26673ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2668aac34f13SBarry Smith }
2669aac34f13SBarry Smith 
2670d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIBAIJSetPreallocation_MPIBAIJ(Mat B, PetscInt bs, PetscInt d_nz, const PetscInt *d_nnz, PetscInt o_nz, const PetscInt *o_nnz)
2671d71ae5a4SJacob Faibussowitsch {
2672ad79cf63SBarry Smith   Mat_MPIBAIJ *b = (Mat_MPIBAIJ *)B->data;
2673535b19f3SBarry Smith   PetscInt     i;
26745d2a9ed1SStefano Zampini   PetscMPIInt  size;
2675a23d5eceSKris Buschelman 
2676a23d5eceSKris Buschelman   PetscFunctionBegin;
2677ad79cf63SBarry Smith   if (B->hash_active) {
2678aea10558SJacob Faibussowitsch     B->ops[0]      = b->cops;
2679ad79cf63SBarry Smith     B->hash_active = PETSC_FALSE;
2680ad79cf63SBarry Smith   }
2681ad79cf63SBarry Smith   if (!B->preallocated) PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)B), bs, &B->bstash));
26829566063dSJacob Faibussowitsch   PetscCall(MatSetBlockSize(B, PetscAbs(bs)));
26839566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(B->rmap));
26849566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(B->cmap));
26859566063dSJacob Faibussowitsch   PetscCall(PetscLayoutGetBlockSize(B->rmap, &bs));
2686899cda47SBarry Smith 
2687a23d5eceSKris Buschelman   if (d_nnz) {
2688ad540459SPierre Jolivet     for (i = 0; i < B->rmap->n / bs; i++) PetscCheck(d_nnz[i] >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "d_nnz cannot be less than -1: local row %" PetscInt_FMT " value %" PetscInt_FMT, i, d_nnz[i]);
2689a23d5eceSKris Buschelman   }
2690a23d5eceSKris Buschelman   if (o_nnz) {
2691ad540459SPierre Jolivet     for (i = 0; i < B->rmap->n / bs; i++) PetscCheck(o_nnz[i] >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "o_nnz cannot be less than -1: local row %" PetscInt_FMT " value %" PetscInt_FMT, i, o_nnz[i]);
2692a23d5eceSKris Buschelman   }
2693a23d5eceSKris Buschelman 
2694a23d5eceSKris Buschelman   b->bs2 = bs * bs;
2695d0f46423SBarry Smith   b->mbs = B->rmap->n / bs;
2696d0f46423SBarry Smith   b->nbs = B->cmap->n / bs;
2697d0f46423SBarry Smith   b->Mbs = B->rmap->N / bs;
2698d0f46423SBarry Smith   b->Nbs = B->cmap->N / bs;
2699a23d5eceSKris Buschelman 
2700ad540459SPierre Jolivet   for (i = 0; i <= b->size; i++) b->rangebs[i] = B->rmap->range[i] / bs;
2701d0f46423SBarry Smith   b->rstartbs = B->rmap->rstart / bs;
2702d0f46423SBarry Smith   b->rendbs   = B->rmap->rend / bs;
2703d0f46423SBarry Smith   b->cstartbs = B->cmap->rstart / bs;
2704d0f46423SBarry Smith   b->cendbs   = B->cmap->rend / bs;
2705a23d5eceSKris Buschelman 
2706cb7b82ddSBarry Smith #if defined(PETSC_USE_CTABLE)
2707eec179cfSJacob Faibussowitsch   PetscCall(PetscHMapIDestroy(&b->colmap));
2708cb7b82ddSBarry Smith #else
27099566063dSJacob Faibussowitsch   PetscCall(PetscFree(b->colmap));
2710cb7b82ddSBarry Smith #endif
27119566063dSJacob Faibussowitsch   PetscCall(PetscFree(b->garray));
27129566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&b->lvec));
27139566063dSJacob Faibussowitsch   PetscCall(VecScatterDestroy(&b->Mvctx));
2714cb7b82ddSBarry Smith 
27159566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)B), &size));
2716c508b908SBarry Smith 
2717c508b908SBarry Smith   MatSeqXAIJGetOptions_Private(b->B);
27189566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&b->B));
27199566063dSJacob Faibussowitsch   PetscCall(MatCreate(PETSC_COMM_SELF, &b->B));
27209566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(b->B, B->rmap->n, size > 1 ? B->cmap->N : 0, B->rmap->n, size > 1 ? B->cmap->N : 0));
27219566063dSJacob Faibussowitsch   PetscCall(MatSetType(b->B, MATSEQBAIJ));
2722c508b908SBarry Smith   MatSeqXAIJRestoreOptions_Private(b->B);
2723cb7b82ddSBarry Smith 
2724c508b908SBarry Smith   MatSeqXAIJGetOptions_Private(b->A);
2725ad79cf63SBarry Smith   PetscCall(MatDestroy(&b->A));
27269566063dSJacob Faibussowitsch   PetscCall(MatCreate(PETSC_COMM_SELF, &b->A));
27279566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(b->A, B->rmap->n, B->cmap->n, B->rmap->n, B->cmap->n));
27289566063dSJacob Faibussowitsch   PetscCall(MatSetType(b->A, MATSEQBAIJ));
2729c508b908SBarry Smith   MatSeqXAIJRestoreOptions_Private(b->A);
2730a23d5eceSKris Buschelman 
27319566063dSJacob Faibussowitsch   PetscCall(MatSeqBAIJSetPreallocation(b->A, bs, d_nz, d_nnz));
27329566063dSJacob Faibussowitsch   PetscCall(MatSeqBAIJSetPreallocation(b->B, bs, o_nz, o_nnz));
2733526dfc15SBarry Smith   B->preallocated  = PETSC_TRUE;
2734cb7b82ddSBarry Smith   B->was_assembled = PETSC_FALSE;
2735cb7b82ddSBarry Smith   B->assembled     = PETSC_FALSE;
27363ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2737a23d5eceSKris Buschelman }
2738a23d5eceSKris Buschelman 
27397087cfbeSBarry Smith extern PetscErrorCode MatDiagonalScaleLocal_MPIBAIJ(Mat, Vec);
27407087cfbeSBarry Smith extern PetscErrorCode MatSetHashTableFactor_MPIBAIJ(Mat, PetscReal);
27415bf65638SKris Buschelman 
2742d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode MatConvert_MPIBAIJ_MPIAdj(Mat B, MatType newtype, MatReuse reuse, Mat *adj)
2743d71ae5a4SJacob Faibussowitsch {
274482094794SBarry Smith   Mat_MPIBAIJ    *b = (Mat_MPIBAIJ *)B->data;
274582094794SBarry Smith   Mat_SeqBAIJ    *d = (Mat_SeqBAIJ *)b->A->data, *o = (Mat_SeqBAIJ *)b->B->data;
274682094794SBarry Smith   PetscInt        M = B->rmap->n / B->rmap->bs, i, *ii, *jj, cnt, j, k, rstart = B->rmap->rstart / B->rmap->bs;
274782094794SBarry Smith   const PetscInt *id = d->i, *jd = d->j, *io = o->i, *jo = o->j, *garray = b->garray;
274882094794SBarry Smith 
274982094794SBarry Smith   PetscFunctionBegin;
27509566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(M + 1, &ii));
275182094794SBarry Smith   ii[0] = 0;
275282094794SBarry Smith   for (i = 0; i < M; i++) {
275308401ef6SPierre Jolivet     PetscCheck((id[i + 1] - id[i]) >= 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Indices wrong %" PetscInt_FMT " %" PetscInt_FMT " %" PetscInt_FMT, i, id[i], id[i + 1]);
275408401ef6SPierre Jolivet     PetscCheck((io[i + 1] - io[i]) >= 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Indices wrong %" PetscInt_FMT " %" PetscInt_FMT " %" PetscInt_FMT, i, io[i], io[i + 1]);
275582094794SBarry Smith     ii[i + 1] = ii[i] + id[i + 1] - id[i] + io[i + 1] - io[i];
27565ee9ba1cSJed Brown     /* remove one from count of matrix has diagonal */
27575ee9ba1cSJed Brown     for (j = id[i]; j < id[i + 1]; j++) {
27589371c9d4SSatish Balay       if (jd[j] == i) {
27599371c9d4SSatish Balay         ii[i + 1]--;
27609371c9d4SSatish Balay         break;
27619371c9d4SSatish Balay       }
27625ee9ba1cSJed Brown     }
276382094794SBarry Smith   }
27649566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(ii[M], &jj));
276582094794SBarry Smith   cnt = 0;
276682094794SBarry Smith   for (i = 0; i < M; i++) {
276782094794SBarry Smith     for (j = io[i]; j < io[i + 1]; j++) {
276882094794SBarry Smith       if (garray[jo[j]] > rstart) break;
276982094794SBarry Smith       jj[cnt++] = garray[jo[j]];
277082094794SBarry Smith     }
277182094794SBarry Smith     for (k = id[i]; k < id[i + 1]; k++) {
2772ad540459SPierre Jolivet       if (jd[k] != i) jj[cnt++] = rstart + jd[k];
277382094794SBarry Smith     }
2774ad540459SPierre Jolivet     for (; j < io[i + 1]; j++) jj[cnt++] = garray[jo[j]];
277582094794SBarry Smith   }
27769566063dSJacob Faibussowitsch   PetscCall(MatCreateMPIAdj(PetscObjectComm((PetscObject)B), M, B->cmap->N / B->rmap->bs, ii, jj, NULL, adj));
27773ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
277882094794SBarry Smith }
277982094794SBarry Smith 
2780c6db04a5SJed Brown #include <../src/mat/impls/aij/mpi/mpiaij.h>
278162471d69SBarry Smith 
2782cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_SeqBAIJ_SeqAIJ(Mat, MatType, MatReuse, Mat *);
2783b2573a8aSBarry Smith 
2784d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode MatConvert_MPIBAIJ_MPIAIJ(Mat A, MatType newtype, MatReuse reuse, Mat *newmat)
2785d71ae5a4SJacob Faibussowitsch {
278662471d69SBarry Smith   Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data;
278785a69837SSatish Balay   Mat_MPIAIJ  *b;
27885f80ce2aSJacob Faibussowitsch   Mat          B;
278962471d69SBarry Smith 
279062471d69SBarry Smith   PetscFunctionBegin;
27915f80ce2aSJacob Faibussowitsch   PetscCheck(A->assembled, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Matrix must be assembled");
279262471d69SBarry Smith 
27930f6d62edSLisandro Dalcin   if (reuse == MAT_REUSE_MATRIX) {
27940f6d62edSLisandro Dalcin     B = *newmat;
27950f6d62edSLisandro Dalcin   } else {
27969566063dSJacob Faibussowitsch     PetscCall(MatCreate(PetscObjectComm((PetscObject)A), &B));
27979566063dSJacob Faibussowitsch     PetscCall(MatSetType(B, MATMPIAIJ));
27989566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(B, A->rmap->n, A->cmap->n, A->rmap->N, A->cmap->N));
27999566063dSJacob Faibussowitsch     PetscCall(MatSetBlockSizes(B, A->rmap->bs, A->cmap->bs));
28009566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJSetPreallocation(B, 0, NULL));
28019566063dSJacob Faibussowitsch     PetscCall(MatMPIAIJSetPreallocation(B, 0, NULL, 0, NULL));
28020f6d62edSLisandro Dalcin   }
280362471d69SBarry Smith   b = (Mat_MPIAIJ *)B->data;
280462471d69SBarry Smith 
28050f6d62edSLisandro Dalcin   if (reuse == MAT_REUSE_MATRIX) {
28069566063dSJacob Faibussowitsch     PetscCall(MatConvert_SeqBAIJ_SeqAIJ(a->A, MATSEQAIJ, MAT_REUSE_MATRIX, &b->A));
28079566063dSJacob Faibussowitsch     PetscCall(MatConvert_SeqBAIJ_SeqAIJ(a->B, MATSEQAIJ, MAT_REUSE_MATRIX, &b->B));
28080f6d62edSLisandro Dalcin   } else {
28097c612885SStefano Zampini     PetscInt   *garray = a->garray;
28107c612885SStefano Zampini     Mat_SeqAIJ *bB;
28117c612885SStefano Zampini     PetscInt    bs, nnz;
28129566063dSJacob Faibussowitsch     PetscCall(MatDestroy(&b->A));
28139566063dSJacob Faibussowitsch     PetscCall(MatDestroy(&b->B));
28147c612885SStefano Zampini     /* just clear out the data structure */
28157c612885SStefano Zampini     PetscCall(MatDisAssemble_MPIAIJ(B));
28169566063dSJacob Faibussowitsch     PetscCall(MatConvert_SeqBAIJ_SeqAIJ(a->A, MATSEQAIJ, MAT_INITIAL_MATRIX, &b->A));
28179566063dSJacob Faibussowitsch     PetscCall(MatConvert_SeqBAIJ_SeqAIJ(a->B, MATSEQAIJ, MAT_INITIAL_MATRIX, &b->B));
28187c612885SStefano Zampini 
28197c612885SStefano Zampini     /* Global numbering for b->B columns */
28207c612885SStefano Zampini     bB  = (Mat_SeqAIJ *)b->B->data;
28217c612885SStefano Zampini     bs  = A->rmap->bs;
28227c612885SStefano Zampini     nnz = bB->i[A->rmap->n];
28237c612885SStefano Zampini     for (PetscInt k = 0; k < nnz; k++) {
28247c612885SStefano Zampini       PetscInt bj = bB->j[k] / bs;
28257c612885SStefano Zampini       PetscInt br = bB->j[k] % bs;
28267c612885SStefano Zampini       bB->j[k]    = garray[bj] * bs + br;
28277c612885SStefano Zampini     }
28280f6d62edSLisandro Dalcin   }
28299566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY));
28309566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY));
28310f6d62edSLisandro Dalcin 
2832511c6705SHong Zhang   if (reuse == MAT_INPLACE_MATRIX) {
28339566063dSJacob Faibussowitsch     PetscCall(MatHeaderReplace(A, &B));
283462471d69SBarry Smith   } else {
283562471d69SBarry Smith     *newmat = B;
283662471d69SBarry Smith   }
28373ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
283862471d69SBarry Smith }
283962471d69SBarry Smith 
28400bad9183SKris Buschelman /*MC
2841fafad747SKris Buschelman    MATMPIBAIJ - MATMPIBAIJ = "mpibaij" - A matrix type to be used for distributed block sparse matrices.
28420bad9183SKris Buschelman 
28430bad9183SKris Buschelman    Options Database Keys:
284411a5261eSBarry Smith + -mat_type mpibaij - sets the matrix type to `MATMPIBAIJ` during a call to `MatSetFromOptions()`
28458c07d4e3SBarry Smith . -mat_block_size <bs> - set the blocksize used to store the matrix
28466679dcc1SBarry Smith . -mat_baij_mult_version version - indicate the version of the matrix-vector product to use  (0 often indicates using BLAS)
284767b8a455SSatish Balay - -mat_use_hash_table <fact> - set hash table factor
28480bad9183SKris Buschelman 
28490bad9183SKris Buschelman    Level: beginner
28500cd7f59aSBarry Smith 
285111a5261eSBarry Smith    Note:
28525e0ad47dSPierre Jolivet     `MatSetOption(A, MAT_STRUCTURE_ONLY, PETSC_TRUE)` may be called for this matrix type. In this no
285311a5261eSBarry Smith     space is allocated for the nonzero entries and any entries passed with `MatSetValues()` are ignored
28540bad9183SKris Buschelman 
28555e0ad47dSPierre Jolivet .seealso: `Mat`, `MATBAIJ`, `MATSEQBAIJ`, `MatCreateBAIJ`
28560bad9183SKris Buschelman M*/
28570bad9183SKris Buschelman 
2858cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIBAIJ_MPIBSTRM(Mat, MatType, MatReuse, Mat *);
2859c0cdd4a1SDahai Guo 
2860d71ae5a4SJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatCreate_MPIBAIJ(Mat B)
2861d71ae5a4SJacob Faibussowitsch {
2862273d9f13SBarry Smith   Mat_MPIBAIJ *b;
286394ae4db5SBarry Smith   PetscBool    flg = PETSC_FALSE;
2864273d9f13SBarry Smith 
2865273d9f13SBarry Smith   PetscFunctionBegin;
28664dfa11a4SJacob Faibussowitsch   PetscCall(PetscNew(&b));
286782502324SSatish Balay   B->data      = (void *)b;
2868aea10558SJacob Faibussowitsch   B->ops[0]    = MatOps_Values;
2869273d9f13SBarry Smith   B->assembled = PETSC_FALSE;
2870273d9f13SBarry Smith 
2871273d9f13SBarry Smith   B->insertmode = NOT_SET_VALUES;
28729566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)B), &b->rank));
28739566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)B), &b->size));
2874273d9f13SBarry Smith 
2875273d9f13SBarry Smith   /* build local table of row and column ownerships */
28769566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(b->size + 1, &b->rangebs));
2877273d9f13SBarry Smith 
2878273d9f13SBarry Smith   /* build cache for off array entries formed */
28799566063dSJacob Faibussowitsch   PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)B), 1, &B->stash));
288026fbe8dcSKarl Rupp 
2881273d9f13SBarry Smith   b->donotstash  = PETSC_FALSE;
28820298fd71SBarry Smith   b->colmap      = NULL;
28830298fd71SBarry Smith   b->garray      = NULL;
2884273d9f13SBarry Smith   b->roworiented = PETSC_TRUE;
2885273d9f13SBarry Smith 
2886273d9f13SBarry Smith   /* stuff used in block assembly */
2887f4259b30SLisandro Dalcin   b->barray = NULL;
2888273d9f13SBarry Smith 
2889273d9f13SBarry Smith   /* stuff used for matrix vector multiply */
2890f4259b30SLisandro Dalcin   b->lvec  = NULL;
2891f4259b30SLisandro Dalcin   b->Mvctx = NULL;
2892273d9f13SBarry Smith 
2893273d9f13SBarry Smith   /* stuff for MatGetRow() */
2894f4259b30SLisandro Dalcin   b->rowindices   = NULL;
2895f4259b30SLisandro Dalcin   b->rowvalues    = NULL;
2896273d9f13SBarry Smith   b->getrowactive = PETSC_FALSE;
2897273d9f13SBarry Smith 
2898273d9f13SBarry Smith   /* hash table stuff */
2899f4259b30SLisandro Dalcin   b->ht           = NULL;
2900f4259b30SLisandro Dalcin   b->hd           = NULL;
2901273d9f13SBarry Smith   b->ht_size      = 0;
2902273d9f13SBarry Smith   b->ht_flag      = PETSC_FALSE;
2903273d9f13SBarry Smith   b->ht_fact      = 0;
2904273d9f13SBarry Smith   b->ht_total_ct  = 0;
2905273d9f13SBarry Smith   b->ht_insert_ct = 0;
2906273d9f13SBarry Smith 
29077dae84e0SHong Zhang   /* stuff for MatCreateSubMatrices_MPIBAIJ_local() */
29087a868f3eSHong Zhang   b->ijonly = PETSC_FALSE;
29097a868f3eSHong Zhang 
29109566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpibaij_mpiadj_C", MatConvert_MPIBAIJ_MPIAdj));
29119566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpibaij_mpiaij_C", MatConvert_MPIBAIJ_MPIAIJ));
29129566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpibaij_mpisbaij_C", MatConvert_MPIBAIJ_MPISBAIJ));
29137ea3e4caSstefano_zampini #if defined(PETSC_HAVE_HYPRE)
29149566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpibaij_hypre_C", MatConvert_AIJ_HYPRE));
29157ea3e4caSstefano_zampini #endif
29169566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatStoreValues_C", MatStoreValues_MPIBAIJ));
29179566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatRetrieveValues_C", MatRetrieveValues_MPIBAIJ));
29189566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMPIBAIJSetPreallocation_C", MatMPIBAIJSetPreallocation_MPIBAIJ));
29199566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMPIBAIJSetPreallocationCSR_C", MatMPIBAIJSetPreallocationCSR_MPIBAIJ));
29209566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatDiagonalScaleLocal_C", MatDiagonalScaleLocal_MPIBAIJ));
29219566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatSetHashTableFactor_C", MatSetHashTableFactor_MPIBAIJ));
29229566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpibaij_is_C", MatConvert_XAIJ_IS));
29239566063dSJacob Faibussowitsch   PetscCall(PetscObjectChangeTypeName((PetscObject)B, MATMPIBAIJ));
292494ae4db5SBarry Smith 
2925d0609cedSBarry Smith   PetscOptionsBegin(PetscObjectComm((PetscObject)B), NULL, "Options for loading MPIBAIJ matrix 1", "Mat");
29269566063dSJacob Faibussowitsch   PetscCall(PetscOptionsName("-mat_use_hash_table", "Use hash table to save time in constructing matrix", "MatSetOption", &flg));
292794ae4db5SBarry Smith   if (flg) {
292894ae4db5SBarry Smith     PetscReal fact = 1.39;
29299566063dSJacob Faibussowitsch     PetscCall(MatSetOption(B, MAT_USE_HASH_TABLE, PETSC_TRUE));
29309566063dSJacob Faibussowitsch     PetscCall(PetscOptionsReal("-mat_use_hash_table", "Use hash table factor", "MatMPIBAIJSetHashTableFactor", fact, &fact, NULL));
293194ae4db5SBarry Smith     if (fact <= 1.0) fact = 1.39;
29329566063dSJacob Faibussowitsch     PetscCall(MatMPIBAIJSetHashTableFactor(B, fact));
29339566063dSJacob Faibussowitsch     PetscCall(PetscInfo(B, "Hash table Factor used %5.2g\n", (double)fact));
293494ae4db5SBarry Smith   }
2935d0609cedSBarry Smith   PetscOptionsEnd();
29363ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2937273d9f13SBarry Smith }
2938273d9f13SBarry Smith 
29392920cce0SJacob Faibussowitsch // PetscClangLinter pragma disable: -fdoc-section-header-unknown
2940209238afSKris Buschelman /*MC
2941002d173eSKris Buschelman    MATBAIJ - MATBAIJ = "baij" - A matrix type to be used for block sparse matrices.
2942209238afSKris Buschelman 
294311a5261eSBarry Smith    This matrix type is identical to `MATSEQBAIJ` when constructed with a single process communicator,
294411a5261eSBarry Smith    and `MATMPIBAIJ` otherwise.
2945209238afSKris Buschelman 
2946209238afSKris Buschelman    Options Database Keys:
294711a5261eSBarry Smith . -mat_type baij - sets the matrix type to `MATBAIJ` during a call to `MatSetFromOptions()`
2948209238afSKris Buschelman 
2949209238afSKris Buschelman   Level: beginner
2950209238afSKris Buschelman 
295167be906fSBarry Smith .seealso: `Mat`, `MatCreateBAIJ()`, `MATSEQBAIJ`, `MATMPIBAIJ`, `MatMPIBAIJSetPreallocation()`, `MatMPIBAIJSetPreallocationCSR()`
2952209238afSKris Buschelman M*/
2953209238afSKris Buschelman 
2954273d9f13SBarry Smith /*@C
295511a5261eSBarry Smith   MatMPIBAIJSetPreallocation - Allocates memory for a sparse parallel matrix in `MATMPIBAIJ` format
295667be906fSBarry Smith   (block compressed row).
2957273d9f13SBarry Smith 
2958c3339decSBarry Smith   Collective
2959273d9f13SBarry Smith 
2960273d9f13SBarry Smith   Input Parameters:
29611c4f3114SJed Brown + B     - the matrix
296211a5261eSBarry Smith . bs    - size of block, the blocks are ALWAYS square. One can use `MatSetBlockSizes()` to set a different row and column blocksize but the row
296367be906fSBarry Smith           blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with `MatCreateVecs()`
2964273d9f13SBarry Smith . d_nz  - number of block nonzeros per block row in diagonal portion of local
2965273d9f13SBarry Smith            submatrix  (same for all local rows)
2966273d9f13SBarry Smith . d_nnz - array containing the number of block nonzeros in the various block rows
2967273d9f13SBarry Smith            of the in diagonal portion of the local (possibly different for each block
296867be906fSBarry Smith            row) or `NULL`.  If you plan to factor the matrix you must leave room for the diagonal entry and
296995742e49SBarry Smith            set it even if it is zero.
2970273d9f13SBarry Smith . o_nz  - number of block nonzeros per block row in the off-diagonal portion of local
2971273d9f13SBarry Smith            submatrix (same for all local rows).
2972273d9f13SBarry Smith - o_nnz - array containing the number of nonzeros in the various block rows of the
2973273d9f13SBarry Smith            off-diagonal portion of the local submatrix (possibly different for
297467be906fSBarry Smith            each block row) or `NULL`.
2975273d9f13SBarry Smith 
297649a6f317SBarry Smith    If the *_nnz parameter is given then the *_nz parameter is ignored
2977273d9f13SBarry Smith 
2978273d9f13SBarry Smith   Options Database Keys:
29798c07d4e3SBarry Smith + -mat_block_size            - size of the blocks to use
298067b8a455SSatish Balay - -mat_use_hash_table <fact> - set hash table factor
2981273d9f13SBarry Smith 
298267be906fSBarry Smith   Level: intermediate
298367be906fSBarry Smith 
2984273d9f13SBarry Smith   Notes:
298567be906fSBarry Smith   For good matrix assembly performance
298667be906fSBarry Smith   the user should preallocate the matrix storage by setting the parameters
298767be906fSBarry Smith   `d_nz` (or `d_nnz`) and `o_nz` (or `o_nnz`).  By setting these parameters accurately,
298867be906fSBarry Smith   performance can be increased by more than a factor of 50.
298967be906fSBarry Smith 
299011a5261eSBarry Smith   If `PETSC_DECIDE` or  `PETSC_DETERMINE` is used for a particular argument on one processor
2991273d9f13SBarry Smith   than it must be used on all processors that share the object for that argument.
2992273d9f13SBarry Smith 
2993273d9f13SBarry Smith   Storage Information:
2994273d9f13SBarry Smith   For a square global matrix we define each processor's diagonal portion
2995273d9f13SBarry Smith   to be its local rows and the corresponding columns (a square submatrix);
2996273d9f13SBarry Smith   each processor's off-diagonal portion encompasses the remainder of the
2997273d9f13SBarry Smith   local matrix (a rectangular submatrix).
2998273d9f13SBarry Smith 
2999273d9f13SBarry Smith   The user can specify preallocated storage for the diagonal part of
300067be906fSBarry Smith   the local submatrix with either `d_nz` or `d_nnz` (not both).  Set
300167be906fSBarry Smith   `d_nz` = `PETSC_DEFAULT` and `d_nnz` = `NULL` for PETSc to control dynamic
3002273d9f13SBarry Smith   memory allocation.  Likewise, specify preallocated storage for the
300367be906fSBarry Smith   off-diagonal part of the local submatrix with `o_nz` or `o_nnz` (not both).
3004273d9f13SBarry Smith 
3005273d9f13SBarry Smith   Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
3006273d9f13SBarry Smith   the figure below we depict these three local rows and all columns (0-11).
3007273d9f13SBarry Smith 
3008273d9f13SBarry Smith .vb
3009273d9f13SBarry Smith            0 1 2 3 4 5 6 7 8 9 10 11
3010a4b1a0f6SJed Brown           --------------------------
3011273d9f13SBarry Smith    row 3  |o o o d d d o o o o  o  o
3012273d9f13SBarry Smith    row 4  |o o o d d d o o o o  o  o
3013273d9f13SBarry Smith    row 5  |o o o d d d o o o o  o  o
3014a4b1a0f6SJed Brown           --------------------------
3015273d9f13SBarry Smith .ve
3016273d9f13SBarry Smith 
3017273d9f13SBarry Smith   Thus, any entries in the d locations are stored in the d (diagonal)
3018273d9f13SBarry Smith   submatrix, and any entries in the o locations are stored in the
3019273d9f13SBarry Smith   o (off-diagonal) submatrix.  Note that the d and the o submatrices are
302011a5261eSBarry Smith   stored simply in the `MATSEQBAIJ` format for compressed row storage.
3021273d9f13SBarry Smith 
302267be906fSBarry Smith   Now `d_nz` should indicate the number of block nonzeros per row in the d matrix,
302367be906fSBarry Smith   and `o_nz` should indicate the number of block nonzeros per row in the o matrix.
3024273d9f13SBarry Smith   In general, for PDE problems in which most nonzeros are near the diagonal,
302520f4b53cSBarry Smith   one expects `d_nz` >> `o_nz`.
3026273d9f13SBarry Smith 
302711a5261eSBarry Smith   You can call `MatGetInfo()` to get information on how effective the preallocation was;
3028aa95bbe8SBarry Smith   for example the fields mallocs,nz_allocated,nz_used,nz_unneeded;
302967be906fSBarry Smith   You can also run with the option `-info` and look for messages with the string
3030aa95bbe8SBarry Smith   malloc in them to see if additional memory allocation was needed.
3031aa95bbe8SBarry Smith 
303267be906fSBarry Smith .seealso: `Mat`, `MATMPIBAIJ`, `MatCreate()`, `MatCreateSeqBAIJ()`, `MatSetValues()`, `MatCreateBAIJ()`, `MatMPIBAIJSetPreallocationCSR()`, `PetscSplitOwnership()`
3033273d9f13SBarry Smith @*/
3034d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIBAIJSetPreallocation(Mat B, PetscInt bs, PetscInt d_nz, const PetscInt d_nnz[], PetscInt o_nz, const PetscInt o_nnz[])
3035d71ae5a4SJacob Faibussowitsch {
3036273d9f13SBarry Smith   PetscFunctionBegin;
30376ba663aaSJed Brown   PetscValidHeaderSpecific(B, MAT_CLASSID, 1);
30386ba663aaSJed Brown   PetscValidType(B, 1);
30396ba663aaSJed Brown   PetscValidLogicalCollectiveInt(B, bs, 2);
3040cac4c232SBarry Smith   PetscTryMethod(B, "MatMPIBAIJSetPreallocation_C", (Mat, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[]), (B, bs, d_nz, d_nnz, o_nz, o_nnz));
30413ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3042273d9f13SBarry Smith }
3043273d9f13SBarry Smith 
30442920cce0SJacob Faibussowitsch // PetscClangLinter pragma disable: -fdoc-section-header-unknown
304579bdfe76SSatish Balay /*@C
304611a5261eSBarry Smith   MatCreateBAIJ - Creates a sparse parallel matrix in `MATBAIJ` format
304767be906fSBarry Smith   (block compressed row).
304879bdfe76SSatish Balay 
3049d083f849SBarry Smith   Collective
3050db81eaa0SLois Curfman McInnes 
305179bdfe76SSatish Balay   Input Parameters:
3052db81eaa0SLois Curfman McInnes + comm  - MPI communicator
305311a5261eSBarry Smith . bs    - size of block, the blocks are ALWAYS square. One can use `MatSetBlockSizes()` to set a different row and column blocksize but the row
305411a5261eSBarry Smith           blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with `MatCreateVecs()`
305511a5261eSBarry Smith . m     - number of local rows (or `PETSC_DECIDE` to have calculated if M is given)
305692e8d321SLois Curfman McInnes           This value should be the same as the local size used in creating the
305792e8d321SLois Curfman McInnes           y vector for the matrix-vector product y = Ax.
305811a5261eSBarry Smith . n     - number of local columns (or `PETSC_DECIDE` to have calculated if N is given)
305992e8d321SLois Curfman McInnes           This value should be the same as the local size used in creating the
306092e8d321SLois Curfman McInnes           x vector for the matrix-vector product y = Ax.
306111a5261eSBarry Smith . M     - number of global rows (or `PETSC_DETERMINE` to have calculated if m is given)
306211a5261eSBarry Smith . N     - number of global columns (or `PETSC_DETERMINE` to have calculated if n is given)
306347a75d0bSBarry Smith . d_nz  - number of nonzero blocks per block row in diagonal portion of local
306479bdfe76SSatish Balay           submatrix  (same for all local rows)
306547a75d0bSBarry Smith . d_nnz - array containing the number of nonzero blocks in the various block rows
306692e8d321SLois Curfman McInnes           of the in diagonal portion of the local (possibly different for each block
30670298fd71SBarry Smith           row) or NULL.  If you plan to factor the matrix you must leave room for the diagonal entry
306895742e49SBarry Smith           and set it even if it is zero.
306947a75d0bSBarry Smith . o_nz  - number of nonzero blocks per block row in the off-diagonal portion of local
307079bdfe76SSatish Balay           submatrix (same for all local rows).
307147a75d0bSBarry Smith - o_nnz - array containing the number of nonzero blocks in the various block rows of the
307292e8d321SLois Curfman McInnes           off-diagonal portion of the local submatrix (possibly different for
30730298fd71SBarry Smith           each block row) or NULL.
307479bdfe76SSatish Balay 
307579bdfe76SSatish Balay   Output Parameter:
307679bdfe76SSatish Balay . A - the matrix
307779bdfe76SSatish Balay 
3078db81eaa0SLois Curfman McInnes   Options Database Keys:
30798c07d4e3SBarry Smith + -mat_block_size            - size of the blocks to use
308067b8a455SSatish Balay - -mat_use_hash_table <fact> - set hash table factor
30813ffaccefSLois Curfman McInnes 
308267be906fSBarry Smith   Level: intermediate
308367be906fSBarry Smith 
308467be906fSBarry Smith   Notes:
308577433607SBarry Smith   It is recommended that one use `MatCreateFromOptions()` or the `MatCreate()`, `MatSetType()` and/or `MatSetFromOptions()`,
308677433607SBarry Smith   MatXXXXSetPreallocation() paradigm instead of this routine directly.
308777433607SBarry Smith   [MatXXXXSetPreallocation() is, for example, `MatSeqBAIJSetPreallocation()`]
308877433607SBarry Smith 
308967be906fSBarry Smith   For good matrix assembly performance
309067be906fSBarry Smith   the user should preallocate the matrix storage by setting the parameters
309167be906fSBarry Smith   `d_nz` (or `d_nnz`) and `o_nz` (or `o_nnz`).  By setting these parameters accurately,
309267be906fSBarry Smith   performance can be increased by more than a factor of 50.
309367be906fSBarry Smith 
309449a6f317SBarry Smith   If the *_nnz parameter is given then the *_nz parameter is ignored
309549a6f317SBarry Smith 
309647a75d0bSBarry Smith   A nonzero block is any block that as 1 or more nonzeros in it
309747a75d0bSBarry Smith 
309879bdfe76SSatish Balay   The user MUST specify either the local or global matrix dimensions
309979bdfe76SSatish Balay   (possibly both).
310079bdfe76SSatish Balay 
310111a5261eSBarry Smith   If `PETSC_DECIDE` or  `PETSC_DETERMINE` is used for a particular argument on one processor
3102be79a94dSBarry Smith   than it must be used on all processors that share the object for that argument.
3103be79a94dSBarry Smith 
3104727bdf9bSBarry Smith   If `m` and `n` are not `PETSC_DECIDE`, then the values determine the `PetscLayout` of the matrix and the ranges returned by
3105727bdf9bSBarry Smith   `MatGetOwnershipRange()`,  `MatGetOwnershipRanges()`, `MatGetOwnershipRangeColumn()`, and `MatGetOwnershipRangesColumn()`.
3106727bdf9bSBarry Smith 
310779bdfe76SSatish Balay   Storage Information:
310879bdfe76SSatish Balay   For a square global matrix we define each processor's diagonal portion
310979bdfe76SSatish Balay   to be its local rows and the corresponding columns (a square submatrix);
311079bdfe76SSatish Balay   each processor's off-diagonal portion encompasses the remainder of the
311179bdfe76SSatish Balay   local matrix (a rectangular submatrix).
311279bdfe76SSatish Balay 
311379bdfe76SSatish Balay   The user can specify preallocated storage for the diagonal part of
311479bdfe76SSatish Balay   the local submatrix with either d_nz or d_nnz (not both).  Set
311567be906fSBarry Smith   `d_nz` = `PETSC_DEFAULT` and `d_nnz` = `NULL` for PETSc to control dynamic
311679bdfe76SSatish Balay   memory allocation.  Likewise, specify preallocated storage for the
311767be906fSBarry Smith   off-diagonal part of the local submatrix with `o_nz` or `o_nnz` (not both).
311879bdfe76SSatish Balay 
311979bdfe76SSatish Balay   Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
312079bdfe76SSatish Balay   the figure below we depict these three local rows and all columns (0-11).
312179bdfe76SSatish Balay 
3122db81eaa0SLois Curfman McInnes .vb
3123db81eaa0SLois Curfman McInnes            0 1 2 3 4 5 6 7 8 9 10 11
3124a4b1a0f6SJed Brown           --------------------------
3125db81eaa0SLois Curfman McInnes    row 3  |o o o d d d o o o o  o  o
3126db81eaa0SLois Curfman McInnes    row 4  |o o o d d d o o o o  o  o
3127db81eaa0SLois Curfman McInnes    row 5  |o o o d d d o o o o  o  o
3128a4b1a0f6SJed Brown           --------------------------
3129db81eaa0SLois Curfman McInnes .ve
313079bdfe76SSatish Balay 
313179bdfe76SSatish Balay   Thus, any entries in the d locations are stored in the d (diagonal)
313279bdfe76SSatish Balay   submatrix, and any entries in the o locations are stored in the
313379bdfe76SSatish Balay   o (off-diagonal) submatrix.  Note that the d and the o submatrices are
313411a5261eSBarry Smith   stored simply in the `MATSEQBAIJ` format for compressed row storage.
313579bdfe76SSatish Balay 
313667be906fSBarry Smith   Now `d_nz` should indicate the number of block nonzeros per row in the d matrix,
313767be906fSBarry Smith   and `o_nz` should indicate the number of block nonzeros per row in the o matrix.
313879bdfe76SSatish Balay   In general, for PDE problems in which most nonzeros are near the diagonal,
313920f4b53cSBarry Smith   one expects `d_nz` >> `o_nz`.
314079bdfe76SSatish Balay 
3141727bdf9bSBarry Smith .seealso: `Mat`, `MatCreate()`, `MatCreateSeqBAIJ()`, `MatSetValues()`, `MatMPIBAIJSetPreallocation()`, `MatMPIBAIJSetPreallocationCSR()`,
3142727bdf9bSBarry Smith           `MatGetOwnershipRange()`,  `MatGetOwnershipRanges()`, `MatGetOwnershipRangeColumn()`, `MatGetOwnershipRangesColumn()`, `PetscLayout`
314379bdfe76SSatish Balay @*/
3144d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateBAIJ(MPI_Comm comm, PetscInt bs, PetscInt m, PetscInt n, PetscInt M, PetscInt N, PetscInt d_nz, const PetscInt d_nnz[], PetscInt o_nz, const PetscInt o_nnz[], Mat *A)
3145d71ae5a4SJacob Faibussowitsch {
3146b24ad042SBarry Smith   PetscMPIInt size;
314779bdfe76SSatish Balay 
3148d64ed03dSBarry Smith   PetscFunctionBegin;
31499566063dSJacob Faibussowitsch   PetscCall(MatCreate(comm, A));
31509566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(*A, m, n, M, N));
31519566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
3152273d9f13SBarry Smith   if (size > 1) {
31539566063dSJacob Faibussowitsch     PetscCall(MatSetType(*A, MATMPIBAIJ));
31549566063dSJacob Faibussowitsch     PetscCall(MatMPIBAIJSetPreallocation(*A, bs, d_nz, d_nnz, o_nz, o_nnz));
3155273d9f13SBarry Smith   } else {
31569566063dSJacob Faibussowitsch     PetscCall(MatSetType(*A, MATSEQBAIJ));
31579566063dSJacob Faibussowitsch     PetscCall(MatSeqBAIJSetPreallocation(*A, bs, d_nz, d_nnz));
31583914022bSBarry Smith   }
31593ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
316079bdfe76SSatish Balay }
3161026e39d0SSatish Balay 
3162d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatDuplicate_MPIBAIJ(Mat matin, MatDuplicateOption cpvalues, Mat *newmat)
3163d71ae5a4SJacob Faibussowitsch {
31640ac07820SSatish Balay   Mat          mat;
31650ac07820SSatish Balay   Mat_MPIBAIJ *a, *oldmat = (Mat_MPIBAIJ *)matin->data;
3166b24ad042SBarry Smith   PetscInt     len = 0;
31670ac07820SSatish Balay 
3168d64ed03dSBarry Smith   PetscFunctionBegin;
3169f4259b30SLisandro Dalcin   *newmat = NULL;
31709566063dSJacob Faibussowitsch   PetscCall(MatCreate(PetscObjectComm((PetscObject)matin), &mat));
31719566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(mat, matin->rmap->n, matin->cmap->n, matin->rmap->N, matin->cmap->N));
31729566063dSJacob Faibussowitsch   PetscCall(MatSetType(mat, ((PetscObject)matin)->type_name));
31737fff6886SHong Zhang 
3174420957c1SBarry Smith   PetscCall(PetscLayoutReference(matin->rmap, &mat->rmap));
3175420957c1SBarry Smith   PetscCall(PetscLayoutReference(matin->cmap, &mat->cmap));
3176420957c1SBarry Smith   if (matin->hash_active) {
3177420957c1SBarry Smith     PetscCall(MatSetUp(mat));
3178420957c1SBarry Smith   } else {
3179d5f3da31SBarry Smith     mat->factortype   = matin->factortype;
3180273d9f13SBarry Smith     mat->preallocated = PETSC_TRUE;
31810ac07820SSatish Balay     mat->assembled    = PETSC_TRUE;
31827fff6886SHong Zhang     mat->insertmode   = NOT_SET_VALUES;
31837fff6886SHong Zhang 
3184273d9f13SBarry Smith     a             = (Mat_MPIBAIJ *)mat->data;
3185d0f46423SBarry Smith     mat->rmap->bs = matin->rmap->bs;
31860ac07820SSatish Balay     a->bs2        = oldmat->bs2;
31870ac07820SSatish Balay     a->mbs        = oldmat->mbs;
31880ac07820SSatish Balay     a->nbs        = oldmat->nbs;
31890ac07820SSatish Balay     a->Mbs        = oldmat->Mbs;
31900ac07820SSatish Balay     a->Nbs        = oldmat->Nbs;
31910ac07820SSatish Balay 
31920ac07820SSatish Balay     a->size         = oldmat->size;
31930ac07820SSatish Balay     a->rank         = oldmat->rank;
3194aef5e8e0SSatish Balay     a->donotstash   = oldmat->donotstash;
3195aef5e8e0SSatish Balay     a->roworiented  = oldmat->roworiented;
3196f4259b30SLisandro Dalcin     a->rowindices   = NULL;
3197f4259b30SLisandro Dalcin     a->rowvalues    = NULL;
31980ac07820SSatish Balay     a->getrowactive = PETSC_FALSE;
3199f4259b30SLisandro Dalcin     a->barray       = NULL;
3200899cda47SBarry Smith     a->rstartbs     = oldmat->rstartbs;
3201899cda47SBarry Smith     a->rendbs       = oldmat->rendbs;
3202899cda47SBarry Smith     a->cstartbs     = oldmat->cstartbs;
3203899cda47SBarry Smith     a->cendbs       = oldmat->cendbs;
32040ac07820SSatish Balay 
3205133cdb44SSatish Balay     /* hash table stuff */
3206f4259b30SLisandro Dalcin     a->ht           = NULL;
3207f4259b30SLisandro Dalcin     a->hd           = NULL;
3208133cdb44SSatish Balay     a->ht_size      = 0;
3209133cdb44SSatish Balay     a->ht_flag      = oldmat->ht_flag;
321025fdafccSSatish Balay     a->ht_fact      = oldmat->ht_fact;
3211133cdb44SSatish Balay     a->ht_total_ct  = 0;
3212133cdb44SSatish Balay     a->ht_insert_ct = 0;
3213133cdb44SSatish Balay 
32149566063dSJacob Faibussowitsch     PetscCall(PetscArraycpy(a->rangebs, oldmat->rangebs, a->size + 1));
32150ac07820SSatish Balay     if (oldmat->colmap) {
3216aa482453SBarry Smith #if defined(PETSC_USE_CTABLE)
3217eec179cfSJacob Faibussowitsch       PetscCall(PetscHMapIDuplicate(oldmat->colmap, &a->colmap));
321848e59246SSatish Balay #else
32199566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(a->Nbs, &a->colmap));
32209566063dSJacob Faibussowitsch       PetscCall(PetscArraycpy(a->colmap, oldmat->colmap, a->Nbs));
322148e59246SSatish Balay #endif
3222f4259b30SLisandro Dalcin     } else a->colmap = NULL;
32234beb1cfeSHong Zhang 
3224f4f49eeaSPierre Jolivet     if (oldmat->garray && (len = ((Mat_SeqBAIJ *)oldmat->B->data)->nbs)) {
32259566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(len, &a->garray));
32269566063dSJacob Faibussowitsch       PetscCall(PetscArraycpy(a->garray, oldmat->garray, len));
3227f4259b30SLisandro Dalcin     } else a->garray = NULL;
32280ac07820SSatish Balay 
32299566063dSJacob Faibussowitsch     PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)matin), matin->rmap->bs, &mat->bstash));
32309566063dSJacob Faibussowitsch     PetscCall(VecDuplicate(oldmat->lvec, &a->lvec));
32319566063dSJacob Faibussowitsch     PetscCall(VecScatterCopy(oldmat->Mvctx, &a->Mvctx));
32327fff6886SHong Zhang 
32339566063dSJacob Faibussowitsch     PetscCall(MatDuplicate(oldmat->A, cpvalues, &a->A));
32349566063dSJacob Faibussowitsch     PetscCall(MatDuplicate(oldmat->B, cpvalues, &a->B));
3235420957c1SBarry Smith   }
32369566063dSJacob Faibussowitsch   PetscCall(PetscFunctionListDuplicate(((PetscObject)matin)->qlist, &((PetscObject)mat)->qlist));
32370ac07820SSatish Balay   *newmat = mat;
32383ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
32390ac07820SSatish Balay }
324057b952d6SSatish Balay 
3241618cc2edSLisandro Dalcin /* Used for both MPIBAIJ and MPISBAIJ matrices */
3242d71ae5a4SJacob Faibussowitsch PetscErrorCode MatLoad_MPIBAIJ_Binary(Mat mat, PetscViewer viewer)
3243d71ae5a4SJacob Faibussowitsch {
3244b51a4376SLisandro Dalcin   PetscInt     header[4], M, N, nz, bs, m, n, mbs, nbs, rows, cols, sum, i, j, k;
3245b51a4376SLisandro Dalcin   PetscInt    *rowidxs, *colidxs, rs, cs, ce;
3246b51a4376SLisandro Dalcin   PetscScalar *matvals;
3247b51a4376SLisandro Dalcin 
3248b51a4376SLisandro Dalcin   PetscFunctionBegin;
32499566063dSJacob Faibussowitsch   PetscCall(PetscViewerSetUp(viewer));
3250b51a4376SLisandro Dalcin 
3251b51a4376SLisandro Dalcin   /* read in matrix header */
32529566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryRead(viewer, header, 4, NULL, PETSC_INT));
32535f80ce2aSJacob Faibussowitsch   PetscCheck(header[0] == MAT_FILE_CLASSID, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Not a matrix object in file");
32549371c9d4SSatish Balay   M  = header[1];
32559371c9d4SSatish Balay   N  = header[2];
32569371c9d4SSatish Balay   nz = header[3];
32575f80ce2aSJacob Faibussowitsch   PetscCheck(M >= 0, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Matrix row size (%" PetscInt_FMT ") in file is negative", M);
32585f80ce2aSJacob Faibussowitsch   PetscCheck(N >= 0, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Matrix column size (%" PetscInt_FMT ") in file is negative", N);
32595f80ce2aSJacob Faibussowitsch   PetscCheck(nz >= 0, PETSC_COMM_SELF, PETSC_ERR_FILE_UNEXPECTED, "Matrix stored in special format on disk, cannot load as MPIBAIJ");
3260b51a4376SLisandro Dalcin 
3261b51a4376SLisandro Dalcin   /* set block sizes from the viewer's .info file */
32629566063dSJacob Faibussowitsch   PetscCall(MatLoad_Binary_BlockSizes(mat, viewer));
3263618cc2edSLisandro Dalcin   /* set local sizes if not set already */
3264618cc2edSLisandro Dalcin   if (mat->rmap->n < 0 && M == N) mat->rmap->n = mat->cmap->n;
3265618cc2edSLisandro Dalcin   if (mat->cmap->n < 0 && M == N) mat->cmap->n = mat->rmap->n;
3266b51a4376SLisandro Dalcin   /* set global sizes if not set already */
3267b51a4376SLisandro Dalcin   if (mat->rmap->N < 0) mat->rmap->N = M;
3268b51a4376SLisandro Dalcin   if (mat->cmap->N < 0) mat->cmap->N = N;
32699566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(mat->rmap));
32709566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(mat->cmap));
3271b51a4376SLisandro Dalcin 
3272b51a4376SLisandro Dalcin   /* check if the matrix sizes are correct */
32739566063dSJacob Faibussowitsch   PetscCall(MatGetSize(mat, &rows, &cols));
32745f80ce2aSJacob Faibussowitsch   PetscCheck(M == rows && N == cols, PETSC_COMM_SELF, PETSC_ERR_FILE_UNEXPECTED, "Matrix in file of different sizes (%" PetscInt_FMT ", %" PetscInt_FMT ") than the input matrix (%" PetscInt_FMT ", %" PetscInt_FMT ")", M, N, rows, cols);
32759566063dSJacob Faibussowitsch   PetscCall(MatGetBlockSize(mat, &bs));
32769566063dSJacob Faibussowitsch   PetscCall(MatGetLocalSize(mat, &m, &n));
32779566063dSJacob Faibussowitsch   PetscCall(PetscLayoutGetRange(mat->rmap, &rs, NULL));
32789566063dSJacob Faibussowitsch   PetscCall(PetscLayoutGetRange(mat->cmap, &cs, &ce));
32799371c9d4SSatish Balay   mbs = m / bs;
32809371c9d4SSatish Balay   nbs = n / bs;
3281b51a4376SLisandro Dalcin 
3282b51a4376SLisandro Dalcin   /* read in row lengths and build row indices */
32839566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(m + 1, &rowidxs));
32849566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryReadAll(viewer, rowidxs + 1, m, PETSC_DECIDE, M, PETSC_INT));
32859371c9d4SSatish Balay   rowidxs[0] = 0;
32869371c9d4SSatish Balay   for (i = 0; i < m; i++) rowidxs[i + 1] += rowidxs[i];
32871c2dc1cbSBarry Smith   PetscCall(MPIU_Allreduce(&rowidxs[m], &sum, 1, MPIU_INT, MPI_SUM, PetscObjectComm((PetscObject)viewer)));
32885f80ce2aSJacob Faibussowitsch   PetscCheck(sum == nz, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Inconsistent matrix data in file: nonzeros = %" PetscInt_FMT ", sum-row-lengths = %" PetscInt_FMT, nz, sum);
3289b51a4376SLisandro Dalcin 
3290b51a4376SLisandro Dalcin   /* read in column indices and matrix values */
32919566063dSJacob Faibussowitsch   PetscCall(PetscMalloc2(rowidxs[m], &colidxs, rowidxs[m], &matvals));
32929566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryReadAll(viewer, colidxs, rowidxs[m], PETSC_DETERMINE, PETSC_DETERMINE, PETSC_INT));
32939566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryReadAll(viewer, matvals, rowidxs[m], PETSC_DETERMINE, PETSC_DETERMINE, PETSC_SCALAR));
3294b51a4376SLisandro Dalcin 
3295b51a4376SLisandro Dalcin   {                /* preallocate matrix storage */
3296b51a4376SLisandro Dalcin     PetscBT    bt; /* helper bit set to count diagonal nonzeros */
3297b51a4376SLisandro Dalcin     PetscHSetI ht; /* helper hash set to count off-diagonal nonzeros */
3298618cc2edSLisandro Dalcin     PetscBool  sbaij, done;
3299b51a4376SLisandro Dalcin     PetscInt  *d_nnz, *o_nnz;
3300b51a4376SLisandro Dalcin 
33019566063dSJacob Faibussowitsch     PetscCall(PetscBTCreate(nbs, &bt));
33029566063dSJacob Faibussowitsch     PetscCall(PetscHSetICreate(&ht));
33039566063dSJacob Faibussowitsch     PetscCall(PetscCalloc2(mbs, &d_nnz, mbs, &o_nnz));
33049566063dSJacob Faibussowitsch     PetscCall(PetscObjectTypeCompare((PetscObject)mat, MATMPISBAIJ, &sbaij));
3305b51a4376SLisandro Dalcin     for (i = 0; i < mbs; i++) {
33069566063dSJacob Faibussowitsch       PetscCall(PetscBTMemzero(nbs, bt));
33079566063dSJacob Faibussowitsch       PetscCall(PetscHSetIClear(ht));
3308618cc2edSLisandro Dalcin       for (k = 0; k < bs; k++) {
3309618cc2edSLisandro Dalcin         PetscInt row = bs * i + k;
3310618cc2edSLisandro Dalcin         for (j = rowidxs[row]; j < rowidxs[row + 1]; j++) {
3311618cc2edSLisandro Dalcin           PetscInt col = colidxs[j];
3312618cc2edSLisandro Dalcin           if (!sbaij || col >= row) {
3313618cc2edSLisandro Dalcin             if (col >= cs && col < ce) {
3314618cc2edSLisandro Dalcin               if (!PetscBTLookupSet(bt, (col - cs) / bs)) d_nnz[i]++;
3315b51a4376SLisandro Dalcin             } else {
33169566063dSJacob Faibussowitsch               PetscCall(PetscHSetIQueryAdd(ht, col / bs, &done));
3317b51a4376SLisandro Dalcin               if (done) o_nnz[i]++;
3318b51a4376SLisandro Dalcin             }
3319b51a4376SLisandro Dalcin           }
3320618cc2edSLisandro Dalcin         }
3321618cc2edSLisandro Dalcin       }
3322618cc2edSLisandro Dalcin     }
33239566063dSJacob Faibussowitsch     PetscCall(PetscBTDestroy(&bt));
33249566063dSJacob Faibussowitsch     PetscCall(PetscHSetIDestroy(&ht));
33259566063dSJacob Faibussowitsch     PetscCall(MatMPIBAIJSetPreallocation(mat, bs, 0, d_nnz, 0, o_nnz));
33269566063dSJacob Faibussowitsch     PetscCall(MatMPISBAIJSetPreallocation(mat, bs, 0, d_nnz, 0, o_nnz));
33279566063dSJacob Faibussowitsch     PetscCall(PetscFree2(d_nnz, o_nnz));
3328b51a4376SLisandro Dalcin   }
3329b51a4376SLisandro Dalcin 
3330b51a4376SLisandro Dalcin   /* store matrix values */
3331b51a4376SLisandro Dalcin   for (i = 0; i < m; i++) {
3332b51a4376SLisandro Dalcin     PetscInt row = rs + i, s = rowidxs[i], e = rowidxs[i + 1];
33339927e4dfSBarry Smith     PetscUseTypeMethod(mat, setvalues, 1, &row, e - s, colidxs + s, matvals + s, INSERT_VALUES);
3334b51a4376SLisandro Dalcin   }
3335b51a4376SLisandro Dalcin 
33369566063dSJacob Faibussowitsch   PetscCall(PetscFree(rowidxs));
33379566063dSJacob Faibussowitsch   PetscCall(PetscFree2(colidxs, matvals));
33389566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(mat, MAT_FINAL_ASSEMBLY));
33399566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(mat, MAT_FINAL_ASSEMBLY));
33403ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3341b51a4376SLisandro Dalcin }
3342b51a4376SLisandro Dalcin 
3343d71ae5a4SJacob Faibussowitsch PetscErrorCode MatLoad_MPIBAIJ(Mat mat, PetscViewer viewer)
3344d71ae5a4SJacob Faibussowitsch {
33457f489da9SVaclav Hapla   PetscBool isbinary;
33464683f7a4SShri Abhyankar 
33474683f7a4SShri Abhyankar   PetscFunctionBegin;
33489566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary));
33495f80ce2aSJacob Faibussowitsch   PetscCheck(isbinary, PetscObjectComm((PetscObject)viewer), PETSC_ERR_SUP, "Viewer type %s not yet supported for reading %s matrices", ((PetscObject)viewer)->type_name, ((PetscObject)mat)->type_name);
33509566063dSJacob Faibussowitsch   PetscCall(MatLoad_MPIBAIJ_Binary(mat, viewer));
33513ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
33524683f7a4SShri Abhyankar }
33534683f7a4SShri Abhyankar 
3354133cdb44SSatish Balay /*@
335511a5261eSBarry Smith   MatMPIBAIJSetHashTableFactor - Sets the factor required to compute the size of the matrices hash table
3356133cdb44SSatish Balay 
3357133cdb44SSatish Balay   Input Parameters:
3358a2b725a8SWilliam Gropp + mat  - the matrix
3359a2b725a8SWilliam Gropp - fact - factor
3360133cdb44SSatish Balay 
336111a5261eSBarry Smith   Options Database Key:
336211a5261eSBarry Smith . -mat_use_hash_table <fact> - provide the factor
3363fee21e36SBarry Smith 
33648c890885SBarry Smith   Level: advanced
33658c890885SBarry Smith 
336667be906fSBarry Smith .seealso: `Mat`, `MATMPIBAIJ`, `MatSetOption()`
3367133cdb44SSatish Balay @*/
3368d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIBAIJSetHashTableFactor(Mat mat, PetscReal fact)
3369d71ae5a4SJacob Faibussowitsch {
33705bf65638SKris Buschelman   PetscFunctionBegin;
3371cac4c232SBarry Smith   PetscTryMethod(mat, "MatSetHashTableFactor_C", (Mat, PetscReal), (mat, fact));
33723ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
33735bf65638SKris Buschelman }
33745bf65638SKris Buschelman 
3375d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetHashTableFactor_MPIBAIJ(Mat mat, PetscReal fact)
3376d71ae5a4SJacob Faibussowitsch {
337725fdafccSSatish Balay   Mat_MPIBAIJ *baij;
3378133cdb44SSatish Balay 
3379133cdb44SSatish Balay   PetscFunctionBegin;
3380133cdb44SSatish Balay   baij          = (Mat_MPIBAIJ *)mat->data;
3381133cdb44SSatish Balay   baij->ht_fact = fact;
33823ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3383133cdb44SSatish Balay }
3384f2a5309cSSatish Balay 
3385d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIBAIJGetSeqBAIJ(Mat A, Mat *Ad, Mat *Ao, const PetscInt *colmap[])
3386d71ae5a4SJacob Faibussowitsch {
3387f2a5309cSSatish Balay   Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data;
3388ab4d48faSStefano Zampini   PetscBool    flg;
33895fd66863SKarl Rupp 
3390f2a5309cSSatish Balay   PetscFunctionBegin;
33919566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)A, MATMPIBAIJ, &flg));
33925f80ce2aSJacob Faibussowitsch   PetscCheck(flg, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "This function requires a MATMPIBAIJ matrix as input");
339321e72a00SBarry Smith   if (Ad) *Ad = a->A;
339421e72a00SBarry Smith   if (Ao) *Ao = a->B;
339521e72a00SBarry Smith   if (colmap) *colmap = a->garray;
33963ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3397f2a5309cSSatish Balay }
339885535b8eSBarry Smith 
339985535b8eSBarry Smith /*
340085535b8eSBarry Smith     Special version for direct calls from Fortran (to eliminate two function call overheads
340185535b8eSBarry Smith */
340285535b8eSBarry Smith #if defined(PETSC_HAVE_FORTRAN_CAPS)
340385535b8eSBarry Smith   #define matmpibaijsetvaluesblocked_ MATMPIBAIJSETVALUESBLOCKED
340485535b8eSBarry Smith #elif !defined(PETSC_HAVE_FORTRAN_UNDERSCORE)
340585535b8eSBarry Smith   #define matmpibaijsetvaluesblocked_ matmpibaijsetvaluesblocked
340685535b8eSBarry Smith #endif
340785535b8eSBarry Smith 
34082920cce0SJacob Faibussowitsch // PetscClangLinter pragma disable: -fdoc-synopsis-matching-symbol-name
340985535b8eSBarry Smith /*@C
341011a5261eSBarry Smith   MatMPIBAIJSetValuesBlocked - Direct Fortran call to replace call to `MatSetValuesBlocked()`
341185535b8eSBarry Smith 
3412c3339decSBarry Smith   Collective
341385535b8eSBarry Smith 
341485535b8eSBarry Smith   Input Parameters:
3415fe59aa6dSJacob Faibussowitsch + matin  - the matrix
341685535b8eSBarry Smith . min    - number of input rows
341785535b8eSBarry Smith . im     - input rows
341885535b8eSBarry Smith . nin    - number of input columns
341985535b8eSBarry Smith . in     - input columns
342085535b8eSBarry Smith . v      - numerical values input
342111a5261eSBarry Smith - addvin - `INSERT_VALUES` or `ADD_VALUES`
342285535b8eSBarry Smith 
342320f4b53cSBarry Smith   Level: advanced
342420f4b53cSBarry Smith 
3425fe59aa6dSJacob Faibussowitsch   Developer Notes:
342611a5261eSBarry Smith   This has a complete copy of `MatSetValuesBlocked_MPIBAIJ()` which is terrible code un-reuse.
342785535b8eSBarry Smith 
342867be906fSBarry Smith .seealso: `Mat`, `MatSetValuesBlocked()`
342985535b8eSBarry Smith @*/
343066976f2fSJacob Faibussowitsch PETSC_EXTERN PetscErrorCode matmpibaijsetvaluesblocked_(Mat *matin, PetscInt *min, const PetscInt im[], PetscInt *nin, const PetscInt in[], const MatScalar v[], InsertMode *addvin)
3431d71ae5a4SJacob Faibussowitsch {
343285535b8eSBarry Smith   /* convert input arguments to C version */
343385535b8eSBarry Smith   Mat        mat = *matin;
343485535b8eSBarry Smith   PetscInt   m = *min, n = *nin;
343585535b8eSBarry Smith   InsertMode addv = *addvin;
343685535b8eSBarry Smith 
343785535b8eSBarry Smith   Mat_MPIBAIJ     *baij = (Mat_MPIBAIJ *)mat->data;
343885535b8eSBarry Smith   const MatScalar *value;
343985535b8eSBarry Smith   MatScalar       *barray      = baij->barray;
3440ace3abfcSBarry Smith   PetscBool        roworiented = baij->roworiented;
344185535b8eSBarry Smith   PetscInt         i, j, ii, jj, row, col, rstart = baij->rstartbs;
344285535b8eSBarry Smith   PetscInt         rend = baij->rendbs, cstart = baij->cstartbs, stepval;
3443d0f46423SBarry Smith   PetscInt         cend = baij->cendbs, bs = mat->rmap->bs, bs2 = baij->bs2;
344485535b8eSBarry Smith 
344585535b8eSBarry Smith   PetscFunctionBegin;
344685535b8eSBarry Smith   /* tasks normally handled by MatSetValuesBlocked() */
344726fbe8dcSKarl Rupp   if (mat->insertmode == NOT_SET_VALUES) mat->insertmode = addv;
34485f80ce2aSJacob Faibussowitsch   else PetscCheck(mat->insertmode == addv, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Cannot mix add values and insert values");
34495f80ce2aSJacob Faibussowitsch   PetscCheck(!mat->factortype, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Not for factored matrix");
345085535b8eSBarry Smith   if (mat->assembled) {
345185535b8eSBarry Smith     mat->was_assembled = PETSC_TRUE;
345285535b8eSBarry Smith     mat->assembled     = PETSC_FALSE;
345385535b8eSBarry Smith   }
34549566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(MAT_SetValues, mat, 0, 0, 0));
345585535b8eSBarry Smith 
345685535b8eSBarry Smith   if (!barray) {
34579566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(bs2, &barray));
345885535b8eSBarry Smith     baij->barray = barray;
345985535b8eSBarry Smith   }
346085535b8eSBarry Smith 
346126fbe8dcSKarl Rupp   if (roworiented) stepval = (n - 1) * bs;
346226fbe8dcSKarl Rupp   else stepval = (m - 1) * bs;
346326fbe8dcSKarl Rupp 
346485535b8eSBarry Smith   for (i = 0; i < m; i++) {
346585535b8eSBarry Smith     if (im[i] < 0) continue;
34666bdcaf15SBarry Smith     PetscCheck(im[i] < baij->Mbs, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large, row %" PetscInt_FMT " max %" PetscInt_FMT, im[i], baij->Mbs - 1);
346785535b8eSBarry Smith     if (im[i] >= rstart && im[i] < rend) {
346885535b8eSBarry Smith       row = im[i] - rstart;
346985535b8eSBarry Smith       for (j = 0; j < n; j++) {
347085535b8eSBarry Smith         /* If NumCol = 1 then a copy is not required */
347185535b8eSBarry Smith         if ((roworiented) && (n == 1)) {
347285535b8eSBarry Smith           barray = (MatScalar *)v + i * bs2;
347385535b8eSBarry Smith         } else if ((!roworiented) && (m == 1)) {
347485535b8eSBarry Smith           barray = (MatScalar *)v + j * bs2;
347585535b8eSBarry Smith         } else { /* Here a copy is required */
347685535b8eSBarry Smith           if (roworiented) {
347785535b8eSBarry Smith             value = v + i * (stepval + bs) * bs + j * bs;
347885535b8eSBarry Smith           } else {
347985535b8eSBarry Smith             value = v + j * (stepval + bs) * bs + i * bs;
348085535b8eSBarry Smith           }
348185535b8eSBarry Smith           for (ii = 0; ii < bs; ii++, value += stepval) {
3482ad540459SPierre Jolivet             for (jj = 0; jj < bs; jj++) *barray++ = *value++;
348385535b8eSBarry Smith           }
348485535b8eSBarry Smith           barray -= bs2;
348585535b8eSBarry Smith         }
348685535b8eSBarry Smith 
348785535b8eSBarry Smith         if (in[j] >= cstart && in[j] < cend) {
348885535b8eSBarry Smith           col = in[j] - cstart;
34899566063dSJacob Faibussowitsch           PetscCall(MatSetValuesBlocked_SeqBAIJ_Inlined(baij->A, row, col, barray, addv, im[i], in[j]));
3490f7d195e4SLawrence Mitchell         } else if (in[j] < 0) {
3491f7d195e4SLawrence Mitchell           continue;
3492f7d195e4SLawrence Mitchell         } else {
3493f7d195e4SLawrence Mitchell           PetscCheck(in[j] < baij->Nbs, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large, col %" PetscInt_FMT " max %" PetscInt_FMT, in[j], baij->Nbs - 1);
349485535b8eSBarry Smith           if (mat->was_assembled) {
349548a46eb9SPierre Jolivet             if (!baij->colmap) PetscCall(MatCreateColmap_MPIBAIJ_Private(mat));
349685535b8eSBarry Smith 
349785535b8eSBarry Smith #if defined(PETSC_USE_DEBUG)
349885535b8eSBarry Smith   #if defined(PETSC_USE_CTABLE)
34999371c9d4SSatish Balay             {
35009371c9d4SSatish Balay               PetscInt data;
3501eec179cfSJacob Faibussowitsch               PetscCall(PetscHMapIGetWithDefault(baij->colmap, in[j] + 1, 0, &data));
350208401ef6SPierre Jolivet               PetscCheck((data - 1) % bs == 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Incorrect colmap");
350385535b8eSBarry Smith             }
350485535b8eSBarry Smith   #else
350508401ef6SPierre Jolivet             PetscCheck((baij->colmap[in[j]] - 1) % bs == 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Incorrect colmap");
350685535b8eSBarry Smith   #endif
350785535b8eSBarry Smith #endif
350885535b8eSBarry Smith #if defined(PETSC_USE_CTABLE)
3509eec179cfSJacob Faibussowitsch             PetscCall(PetscHMapIGetWithDefault(baij->colmap, in[j] + 1, 0, &col));
351085535b8eSBarry Smith             col = (col - 1) / bs;
351185535b8eSBarry Smith #else
351285535b8eSBarry Smith             col = (baij->colmap[in[j]] - 1) / bs;
351385535b8eSBarry Smith #endif
3514f4f49eeaSPierre Jolivet             if (col < 0 && !((Mat_SeqBAIJ *)baij->A->data)->nonew) {
35159566063dSJacob Faibussowitsch               PetscCall(MatDisAssemble_MPIBAIJ(mat));
351685535b8eSBarry Smith               col = in[j];
351785535b8eSBarry Smith             }
351826fbe8dcSKarl Rupp           } else col = in[j];
35199566063dSJacob Faibussowitsch           PetscCall(MatSetValuesBlocked_SeqBAIJ_Inlined(baij->B, row, col, barray, addv, im[i], in[j]));
352085535b8eSBarry Smith         }
352185535b8eSBarry Smith       }
352285535b8eSBarry Smith     } else {
352385535b8eSBarry Smith       if (!baij->donotstash) {
352485535b8eSBarry Smith         if (roworiented) {
35259566063dSJacob Faibussowitsch           PetscCall(MatStashValuesRowBlocked_Private(&mat->bstash, im[i], n, in, v, m, n, i));
352685535b8eSBarry Smith         } else {
35279566063dSJacob Faibussowitsch           PetscCall(MatStashValuesColBlocked_Private(&mat->bstash, im[i], n, in, v, m, n, i));
352885535b8eSBarry Smith         }
352985535b8eSBarry Smith       }
353085535b8eSBarry Smith     }
353185535b8eSBarry Smith   }
353285535b8eSBarry Smith 
353385535b8eSBarry Smith   /* task normally handled by MatSetValuesBlocked() */
35349566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(MAT_SetValues, mat, 0, 0, 0));
35353ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
353685535b8eSBarry Smith }
3537dfb205c3SBarry Smith 
3538dfb205c3SBarry Smith /*@
3539d8a51d2aSBarry Smith   MatCreateMPIBAIJWithArrays - creates a `MATMPIBAIJ` matrix using arrays that contain in standard block CSR format for the local rows.
3540dfb205c3SBarry Smith 
3541d083f849SBarry Smith   Collective
3542dfb205c3SBarry Smith 
3543dfb205c3SBarry Smith   Input Parameters:
3544dfb205c3SBarry Smith + comm - MPI communicator
3545dfb205c3SBarry Smith . bs   - the block size, only a block size of 1 is supported
354611a5261eSBarry Smith . m    - number of local rows (Cannot be `PETSC_DECIDE`)
3547dfb205c3SBarry Smith . n    - This value should be the same as the local size used in creating the
3548d8a51d2aSBarry Smith          x vector for the matrix-vector product $ y = Ax $. (or `PETSC_DECIDE` to have
3549d8a51d2aSBarry Smith          calculated if `N` is given) For square matrices `n` is almost always `m`.
3550d8a51d2aSBarry Smith . M    - number of global rows (or `PETSC_DETERMINE` to have calculated if `m` is given)
3551d8a51d2aSBarry Smith . N    - number of global columns (or `PETSC_DETERMINE` to have calculated if `n` is given)
3552483a2f95SBarry Smith . i    - row indices; that is i[0] = 0, i[row] = i[row-1] + number of block elements in that rowth block row of the matrix
3553dfb205c3SBarry Smith . j    - column indices
3554dfb205c3SBarry Smith - a    - matrix values
3555dfb205c3SBarry Smith 
3556dfb205c3SBarry Smith   Output Parameter:
3557dfb205c3SBarry Smith . mat - the matrix
3558dfb205c3SBarry Smith 
3559dfb205c3SBarry Smith   Level: intermediate
3560dfb205c3SBarry Smith 
3561dfb205c3SBarry Smith   Notes:
356267be906fSBarry Smith   The `i`, `j`, and `a` arrays ARE copied by this routine into the internal format used by PETSc;
3563dfb205c3SBarry Smith   thus you CANNOT change the matrix entries by changing the values of a[] after you have
356411a5261eSBarry Smith   called this routine. Use `MatCreateMPIAIJWithSplitArrays()` to avoid needing to copy the arrays.
3565dfb205c3SBarry Smith 
35663adadaf3SJed Brown   The order of the entries in values is the same as the block compressed sparse row storage format; that is, it is
35673adadaf3SJed Brown   the same as a three dimensional array in Fortran values(bs,bs,nnz) that contains the first column of the first
35683adadaf3SJed Brown   block, followed by the second column of the first block etc etc.  That is, the blocks are contiguous in memory
35693adadaf3SJed Brown   with column-major ordering within blocks.
35703adadaf3SJed Brown 
3571d8a51d2aSBarry Smith   The `i` and `j` indices are 0 based, and `i` indices are indices corresponding to the local `j` array.
3572dfb205c3SBarry Smith 
357367be906fSBarry Smith .seealso: `Mat`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`,
35747d2c085eSPierre Jolivet           `MATMPIAIJ`, `MatCreateAIJ()`, `MatCreateMPIAIJWithSplitArrays()`
3575dfb205c3SBarry Smith @*/
3576d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIBAIJWithArrays(MPI_Comm comm, PetscInt bs, PetscInt m, PetscInt n, PetscInt M, PetscInt N, const PetscInt i[], const PetscInt j[], const PetscScalar a[], Mat *mat)
3577d71ae5a4SJacob Faibussowitsch {
3578dfb205c3SBarry Smith   PetscFunctionBegin;
35795f80ce2aSJacob Faibussowitsch   PetscCheck(!i[0], PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "i (row indices) must start with 0");
35805f80ce2aSJacob Faibussowitsch   PetscCheck(m >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "local number of rows (m) cannot be PETSC_DECIDE, or negative");
35819566063dSJacob Faibussowitsch   PetscCall(MatCreate(comm, mat));
35829566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(*mat, m, n, M, N));
35839566063dSJacob Faibussowitsch   PetscCall(MatSetType(*mat, MATMPIBAIJ));
35849566063dSJacob Faibussowitsch   PetscCall(MatSetBlockSize(*mat, bs));
35859566063dSJacob Faibussowitsch   PetscCall(MatSetUp(*mat));
35869566063dSJacob Faibussowitsch   PetscCall(MatSetOption(*mat, MAT_ROW_ORIENTED, PETSC_FALSE));
35879566063dSJacob Faibussowitsch   PetscCall(MatMPIBAIJSetPreallocationCSR(*mat, bs, i, j, a));
35889566063dSJacob Faibussowitsch   PetscCall(MatSetOption(*mat, MAT_ROW_ORIENTED, PETSC_TRUE));
35893ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3590dfb205c3SBarry Smith }
3591e561ad89SHong Zhang 
3592d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIMatConcatenateSeqMat_MPIBAIJ(MPI_Comm comm, Mat inmat, PetscInt n, MatReuse scall, Mat *outmat)
3593d71ae5a4SJacob Faibussowitsch {
3594bd153df0SHong Zhang   PetscInt     m, N, i, rstart, nnz, Ii, bs, cbs;
3595bd153df0SHong Zhang   PetscInt    *indx;
3596bd153df0SHong Zhang   PetscScalar *values;
3597e561ad89SHong Zhang 
3598e561ad89SHong Zhang   PetscFunctionBegin;
35999566063dSJacob Faibussowitsch   PetscCall(MatGetSize(inmat, &m, &N));
3600bd153df0SHong Zhang   if (scall == MAT_INITIAL_MATRIX) { /* symbolic phase */
3601bd153df0SHong Zhang     Mat_SeqBAIJ *a = (Mat_SeqBAIJ *)inmat->data;
36022c6ba4edSHong Zhang     PetscInt    *dnz, *onz, mbs, Nbs, nbs;
3603bd153df0SHong Zhang     PetscInt    *bindx, rmax = a->rmax, j;
360477f764caSHong Zhang     PetscMPIInt  rank, size;
3605e561ad89SHong Zhang 
36069566063dSJacob Faibussowitsch     PetscCall(MatGetBlockSizes(inmat, &bs, &cbs));
36079371c9d4SSatish Balay     mbs = m / bs;
36089371c9d4SSatish Balay     Nbs = N / cbs;
360948a46eb9SPierre Jolivet     if (n == PETSC_DECIDE) PetscCall(PetscSplitOwnershipBlock(comm, cbs, &n, &N));
3610da91a574SPierre Jolivet     nbs = n / cbs;
3611e561ad89SHong Zhang 
36129566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(rmax, &bindx));
3613d0609cedSBarry Smith     MatPreallocateBegin(comm, mbs, nbs, dnz, onz); /* inline function, output __end and __rstart are used below */
361477f764caSHong Zhang 
36159566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Comm_rank(comm, &rank));
36169566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Comm_rank(comm, &size));
361777f764caSHong Zhang     if (rank == size - 1) {
361877f764caSHong Zhang       /* Check sum(nbs) = Nbs */
36195f80ce2aSJacob Faibussowitsch       PetscCheck(__end == Nbs, PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "Sum of local block columns %" PetscInt_FMT " != global block columns %" PetscInt_FMT, __end, Nbs);
362077f764caSHong Zhang     }
362177f764caSHong Zhang 
3622d0609cedSBarry Smith     rstart = __rstart; /* block rstart of *outmat; see inline function MatPreallocateBegin */
3623bd153df0SHong Zhang     for (i = 0; i < mbs; i++) {
36249566063dSJacob Faibussowitsch       PetscCall(MatGetRow_SeqBAIJ(inmat, i * bs, &nnz, &indx, NULL)); /* non-blocked nnz and indx */
3625647a6520SHong Zhang       nnz = nnz / bs;
3626647a6520SHong Zhang       for (j = 0; j < nnz; j++) bindx[j] = indx[j * bs] / bs;
36279566063dSJacob Faibussowitsch       PetscCall(MatPreallocateSet(i + rstart, nnz, bindx, dnz, onz));
36289566063dSJacob Faibussowitsch       PetscCall(MatRestoreRow_SeqBAIJ(inmat, i * bs, &nnz, &indx, NULL));
3629e561ad89SHong Zhang     }
36309566063dSJacob Faibussowitsch     PetscCall(PetscFree(bindx));
3631e561ad89SHong Zhang 
36329566063dSJacob Faibussowitsch     PetscCall(MatCreate(comm, outmat));
36339566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(*outmat, m, n, PETSC_DETERMINE, PETSC_DETERMINE));
36349566063dSJacob Faibussowitsch     PetscCall(MatSetBlockSizes(*outmat, bs, cbs));
36359566063dSJacob Faibussowitsch     PetscCall(MatSetType(*outmat, MATBAIJ));
36369566063dSJacob Faibussowitsch     PetscCall(MatSeqBAIJSetPreallocation(*outmat, bs, 0, dnz));
36379566063dSJacob Faibussowitsch     PetscCall(MatMPIBAIJSetPreallocation(*outmat, bs, 0, dnz, 0, onz));
3638d0609cedSBarry Smith     MatPreallocateEnd(dnz, onz);
36399566063dSJacob Faibussowitsch     PetscCall(MatSetOption(*outmat, MAT_NO_OFF_PROC_ENTRIES, PETSC_TRUE));
3640e561ad89SHong Zhang   }
3641e561ad89SHong Zhang 
3642bd153df0SHong Zhang   /* numeric phase */
36439566063dSJacob Faibussowitsch   PetscCall(MatGetBlockSizes(inmat, &bs, &cbs));
36449566063dSJacob Faibussowitsch   PetscCall(MatGetOwnershipRange(*outmat, &rstart, NULL));
3645e561ad89SHong Zhang 
3646e561ad89SHong Zhang   for (i = 0; i < m; i++) {
36479566063dSJacob Faibussowitsch     PetscCall(MatGetRow_SeqBAIJ(inmat, i, &nnz, &indx, &values));
3648e561ad89SHong Zhang     Ii = i + rstart;
36499566063dSJacob Faibussowitsch     PetscCall(MatSetValues(*outmat, 1, &Ii, nnz, indx, values, INSERT_VALUES));
36509566063dSJacob Faibussowitsch     PetscCall(MatRestoreRow_SeqBAIJ(inmat, i, &nnz, &indx, &values));
3651e561ad89SHong Zhang   }
36529566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(*outmat, MAT_FINAL_ASSEMBLY));
36539566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(*outmat, MAT_FINAL_ASSEMBLY));
36543ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3655e561ad89SHong Zhang }
3656