1be1d678aSKris Buschelman #define PETSCMAT_DLL 279bdfe76SSatish Balay 37c4f633dSBarry Smith #include "../src/mat/impls/baij/mpi/mpibaij.h" /*I "petscmat.h" I*/ 479bdfe76SSatish Balay 5dfbe8321SBarry Smith EXTERN PetscErrorCode MatSetUpMultiply_MPIBAIJ(Mat); 6dfbe8321SBarry Smith EXTERN PetscErrorCode DisAssemble_MPIBAIJ(Mat); 7b24ad042SBarry Smith EXTERN PetscErrorCode MatIncreaseOverlap_MPIBAIJ(Mat,PetscInt,IS[],PetscInt); 8b24ad042SBarry Smith EXTERN PetscErrorCode MatGetSubMatrices_MPIBAIJ(Mat,PetscInt,const IS[],const IS[],MatReuse,Mat *[]); 9b24ad042SBarry Smith EXTERN PetscErrorCode MatGetValues_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt [],PetscScalar []); 10b24ad042SBarry Smith EXTERN PetscErrorCode MatSetValues_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt [],const PetscScalar [],InsertMode); 11b24ad042SBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode); 12b24ad042SBarry Smith EXTERN PetscErrorCode MatGetRow_SeqBAIJ(Mat,PetscInt,PetscInt*,PetscInt*[],PetscScalar*[]); 13b24ad042SBarry Smith EXTERN PetscErrorCode MatRestoreRow_SeqBAIJ(Mat,PetscInt,PetscInt*,PetscInt*[],PetscScalar*[]); 14f4df32b1SMatthew Knepley EXTERN PetscErrorCode MatZeroRows_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscScalar); 1593fea6afSBarry Smith 164a2ae208SSatish Balay #undef __FUNCT__ 17985db425SBarry Smith #define __FUNCT__ "MatGetRowMaxAbs_MPIBAIJ" 18985db425SBarry Smith PetscErrorCode MatGetRowMaxAbs_MPIBAIJ(Mat A,Vec v,PetscInt idx[]) 197843d17aSBarry Smith { 207843d17aSBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 21dfbe8321SBarry Smith PetscErrorCode ierr; 22985db425SBarry Smith PetscInt i,*idxb = 0; 2387828ca2SBarry Smith PetscScalar *va,*vb; 247843d17aSBarry Smith Vec vtmp; 257843d17aSBarry Smith 267843d17aSBarry Smith PetscFunctionBegin; 27985db425SBarry Smith ierr = MatGetRowMaxAbs(a->A,v,idx);CHKERRQ(ierr); 281ebc52fbSHong Zhang ierr = VecGetArray(v,&va);CHKERRQ(ierr); 29985db425SBarry Smith if (idx) { 30192daf7cSBarry Smith for (i=0; i<A->rmap->n; i++) {if (PetscAbsScalar(va[i])) idx[i] += A->cmap->rstart;} 31985db425SBarry Smith } 327843d17aSBarry Smith 33d0f46423SBarry Smith ierr = VecCreateSeq(PETSC_COMM_SELF,A->rmap->n,&vtmp);CHKERRQ(ierr); 34d0f46423SBarry Smith if (idx) {ierr = PetscMalloc(A->rmap->n*sizeof(PetscInt),&idxb);CHKERRQ(ierr);} 35985db425SBarry Smith ierr = MatGetRowMaxAbs(a->B,vtmp,idxb);CHKERRQ(ierr); 361ebc52fbSHong Zhang ierr = VecGetArray(vtmp,&vb);CHKERRQ(ierr); 377843d17aSBarry Smith 38d0f46423SBarry Smith for (i=0; i<A->rmap->n; i++){ 39d0f46423SBarry Smith if (PetscAbsScalar(va[i]) < PetscAbsScalar(vb[i])) {va[i] = vb[i]; if (idx) idx[i] = A->cmap->bs*a->garray[idxb[i]/A->cmap->bs] + (idxb[i] % A->cmap->bs);} 407843d17aSBarry Smith } 417843d17aSBarry Smith 421ebc52fbSHong Zhang ierr = VecRestoreArray(v,&va);CHKERRQ(ierr); 431ebc52fbSHong Zhang ierr = VecRestoreArray(vtmp,&vb);CHKERRQ(ierr); 44985db425SBarry Smith if (idxb) {ierr = PetscFree(idxb);CHKERRQ(ierr);} 45ac355199SBarry Smith ierr = VecDestroy(vtmp);CHKERRQ(ierr); 467843d17aSBarry Smith PetscFunctionReturn(0); 477843d17aSBarry Smith } 487843d17aSBarry Smith 497fc3c18eSBarry Smith EXTERN_C_BEGIN 504a2ae208SSatish Balay #undef __FUNCT__ 514a2ae208SSatish Balay #define __FUNCT__ "MatStoreValues_MPIBAIJ" 52be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatStoreValues_MPIBAIJ(Mat mat) 537fc3c18eSBarry Smith { 547fc3c18eSBarry Smith Mat_MPIBAIJ *aij = (Mat_MPIBAIJ *)mat->data; 55dfbe8321SBarry Smith PetscErrorCode ierr; 567fc3c18eSBarry Smith 577fc3c18eSBarry Smith PetscFunctionBegin; 587fc3c18eSBarry Smith ierr = MatStoreValues(aij->A);CHKERRQ(ierr); 597fc3c18eSBarry Smith ierr = MatStoreValues(aij->B);CHKERRQ(ierr); 607fc3c18eSBarry Smith PetscFunctionReturn(0); 617fc3c18eSBarry Smith } 627fc3c18eSBarry Smith EXTERN_C_END 637fc3c18eSBarry Smith 647fc3c18eSBarry Smith EXTERN_C_BEGIN 654a2ae208SSatish Balay #undef __FUNCT__ 664a2ae208SSatish Balay #define __FUNCT__ "MatRetrieveValues_MPIBAIJ" 67be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatRetrieveValues_MPIBAIJ(Mat mat) 687fc3c18eSBarry Smith { 697fc3c18eSBarry Smith Mat_MPIBAIJ *aij = (Mat_MPIBAIJ *)mat->data; 70dfbe8321SBarry Smith PetscErrorCode ierr; 717fc3c18eSBarry Smith 727fc3c18eSBarry Smith PetscFunctionBegin; 737fc3c18eSBarry Smith ierr = MatRetrieveValues(aij->A);CHKERRQ(ierr); 747fc3c18eSBarry Smith ierr = MatRetrieveValues(aij->B);CHKERRQ(ierr); 757fc3c18eSBarry Smith PetscFunctionReturn(0); 767fc3c18eSBarry Smith } 777fc3c18eSBarry Smith EXTERN_C_END 787fc3c18eSBarry Smith 79537820f0SBarry Smith /* 80537820f0SBarry Smith Local utility routine that creates a mapping from the global column 8157b952d6SSatish Balay number to the local number in the off-diagonal part of the local 8257b952d6SSatish Balay storage of the matrix. This is done in a non scable way since the 8357b952d6SSatish Balay length of colmap equals the global matrix length. 8457b952d6SSatish Balay */ 854a2ae208SSatish Balay #undef __FUNCT__ 864a2ae208SSatish Balay #define __FUNCT__ "CreateColmap_MPIBAIJ_Private" 87dfbe8321SBarry Smith PetscErrorCode CreateColmap_MPIBAIJ_Private(Mat mat) 8857b952d6SSatish Balay { 8957b952d6SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 9057b952d6SSatish Balay Mat_SeqBAIJ *B = (Mat_SeqBAIJ*)baij->B->data; 916849ba73SBarry Smith PetscErrorCode ierr; 92d0f46423SBarry Smith PetscInt nbs = B->nbs,i,bs=mat->rmap->bs; 9357b952d6SSatish Balay 94d64ed03dSBarry Smith PetscFunctionBegin; 95aa482453SBarry Smith #if defined (PETSC_USE_CTABLE) 96f14a1c24SBarry Smith ierr = PetscTableCreate(baij->nbs,&baij->colmap);CHKERRQ(ierr); 9748e59246SSatish Balay for (i=0; i<nbs; i++){ 980f5bd95cSBarry Smith ierr = PetscTableAdd(baij->colmap,baij->garray[i]+1,i*bs+1);CHKERRQ(ierr); 9948e59246SSatish Balay } 10048e59246SSatish Balay #else 101b24ad042SBarry Smith ierr = PetscMalloc((baij->Nbs+1)*sizeof(PetscInt),&baij->colmap);CHKERRQ(ierr); 10252e6d16bSBarry Smith ierr = PetscLogObjectMemory(mat,baij->Nbs*sizeof(PetscInt));CHKERRQ(ierr); 103b24ad042SBarry Smith ierr = PetscMemzero(baij->colmap,baij->Nbs*sizeof(PetscInt));CHKERRQ(ierr); 104928fc39bSSatish Balay for (i=0; i<nbs; i++) baij->colmap[baij->garray[i]] = i*bs+1; 10548e59246SSatish Balay #endif 1063a40ed3dSBarry Smith PetscFunctionReturn(0); 10757b952d6SSatish Balay } 10857b952d6SSatish Balay 10980c1aa95SSatish Balay #define CHUNKSIZE 10 11080c1aa95SSatish Balay 111f5e9677aSSatish Balay #define MatSetValues_SeqBAIJ_A_Private(row,col,value,addv) \ 11280c1aa95SSatish Balay { \ 11380c1aa95SSatish Balay \ 11480c1aa95SSatish Balay brow = row/bs; \ 11580c1aa95SSatish Balay rp = aj + ai[brow]; ap = aa + bs2*ai[brow]; \ 116ac7a638eSSatish Balay rmax = aimax[brow]; nrow = ailen[brow]; \ 11780c1aa95SSatish Balay bcol = col/bs; \ 11880c1aa95SSatish Balay ridx = row % bs; cidx = col % bs; \ 119ab26458aSBarry Smith low = 0; high = nrow; \ 120ab26458aSBarry Smith while (high-low > 3) { \ 121ab26458aSBarry Smith t = (low+high)/2; \ 122ab26458aSBarry Smith if (rp[t] > bcol) high = t; \ 123ab26458aSBarry Smith else low = t; \ 124ab26458aSBarry Smith } \ 125ab26458aSBarry Smith for (_i=low; _i<high; _i++) { \ 12680c1aa95SSatish Balay if (rp[_i] > bcol) break; \ 12780c1aa95SSatish Balay if (rp[_i] == bcol) { \ 12880c1aa95SSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 129eada6651SSatish Balay if (addv == ADD_VALUES) *bap += value; \ 130eada6651SSatish Balay else *bap = value; \ 131ac7a638eSSatish Balay goto a_noinsert; \ 13280c1aa95SSatish Balay } \ 13380c1aa95SSatish Balay } \ 13489280ab3SLois Curfman McInnes if (a->nonew == 1) goto a_noinsert; \ 135085a36d4SBarry Smith if (a->nonew == -1) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \ 136421e10b8SBarry Smith MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,brow,bcol,rmax,aa,ai,aj,rp,ap,aimax,a->nonew,MatScalar); \ 13780c1aa95SSatish Balay N = nrow++ - 1; \ 13880c1aa95SSatish Balay /* shift up all the later entries in this row */ \ 13980c1aa95SSatish Balay for (ii=N; ii>=_i; ii--) { \ 14080c1aa95SSatish Balay rp[ii+1] = rp[ii]; \ 1413eda8832SBarry Smith ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 14280c1aa95SSatish Balay } \ 1433eda8832SBarry Smith if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr); } \ 14480c1aa95SSatish Balay rp[_i] = bcol; \ 14580c1aa95SSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 146ac7a638eSSatish Balay a_noinsert:; \ 14780c1aa95SSatish Balay ailen[brow] = nrow; \ 14880c1aa95SSatish Balay } 14957b952d6SSatish Balay 150ac7a638eSSatish Balay #define MatSetValues_SeqBAIJ_B_Private(row,col,value,addv) \ 151ac7a638eSSatish Balay { \ 152ac7a638eSSatish Balay brow = row/bs; \ 153ac7a638eSSatish Balay rp = bj + bi[brow]; ap = ba + bs2*bi[brow]; \ 154ac7a638eSSatish Balay rmax = bimax[brow]; nrow = bilen[brow]; \ 155ac7a638eSSatish Balay bcol = col/bs; \ 156ac7a638eSSatish Balay ridx = row % bs; cidx = col % bs; \ 157ac7a638eSSatish Balay low = 0; high = nrow; \ 158ac7a638eSSatish Balay while (high-low > 3) { \ 159ac7a638eSSatish Balay t = (low+high)/2; \ 160ac7a638eSSatish Balay if (rp[t] > bcol) high = t; \ 161ac7a638eSSatish Balay else low = t; \ 162ac7a638eSSatish Balay } \ 163ac7a638eSSatish Balay for (_i=low; _i<high; _i++) { \ 164ac7a638eSSatish Balay if (rp[_i] > bcol) break; \ 165ac7a638eSSatish Balay if (rp[_i] == bcol) { \ 166ac7a638eSSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 167ac7a638eSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 168ac7a638eSSatish Balay else *bap = value; \ 169ac7a638eSSatish Balay goto b_noinsert; \ 170ac7a638eSSatish Balay } \ 171ac7a638eSSatish Balay } \ 17289280ab3SLois Curfman McInnes if (b->nonew == 1) goto b_noinsert; \ 173085a36d4SBarry Smith if (b->nonew == -1) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \ 174421e10b8SBarry Smith MatSeqXAIJReallocateAIJ(B,b->mbs,bs2,nrow,brow,bcol,rmax,ba,bi,bj,rp,ap,bimax,b->nonew,MatScalar); \ 175085a36d4SBarry Smith CHKMEMQ;\ 176ac7a638eSSatish Balay N = nrow++ - 1; \ 177ac7a638eSSatish Balay /* shift up all the later entries in this row */ \ 178ac7a638eSSatish Balay for (ii=N; ii>=_i; ii--) { \ 179ac7a638eSSatish Balay rp[ii+1] = rp[ii]; \ 1803eda8832SBarry Smith ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 181ac7a638eSSatish Balay } \ 1823eda8832SBarry Smith if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr);} \ 183ac7a638eSSatish Balay rp[_i] = bcol; \ 184ac7a638eSSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 185ac7a638eSSatish Balay b_noinsert:; \ 186ac7a638eSSatish Balay bilen[brow] = nrow; \ 187ac7a638eSSatish Balay } 188ac7a638eSSatish Balay 1894a2ae208SSatish Balay #undef __FUNCT__ 1904a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_MPIBAIJ" 191b24ad042SBarry Smith PetscErrorCode MatSetValues_MPIBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv) 19257b952d6SSatish Balay { 19357b952d6SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 19493fea6afSBarry Smith MatScalar value; 195273d9f13SBarry Smith PetscTruth roworiented = baij->roworiented; 196dfbe8321SBarry Smith PetscErrorCode ierr; 197b24ad042SBarry Smith PetscInt i,j,row,col; 198d0f46423SBarry Smith PetscInt rstart_orig=mat->rmap->rstart; 199d0f46423SBarry Smith PetscInt rend_orig=mat->rmap->rend,cstart_orig=mat->cmap->rstart; 200d0f46423SBarry Smith PetscInt cend_orig=mat->cmap->rend,bs=mat->rmap->bs; 20157b952d6SSatish Balay 202eada6651SSatish Balay /* Some Variables required in the macro */ 20380c1aa95SSatish Balay Mat A = baij->A; 20480c1aa95SSatish Balay Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)(A)->data; 205b24ad042SBarry Smith PetscInt *aimax=a->imax,*ai=a->i,*ailen=a->ilen,*aj=a->j; 2063eda8832SBarry Smith MatScalar *aa=a->a; 207ac7a638eSSatish Balay 208ac7a638eSSatish Balay Mat B = baij->B; 209ac7a638eSSatish Balay Mat_SeqBAIJ *b = (Mat_SeqBAIJ*)(B)->data; 210b24ad042SBarry Smith PetscInt *bimax=b->imax,*bi=b->i,*bilen=b->ilen,*bj=b->j; 2113eda8832SBarry Smith MatScalar *ba=b->a; 212ac7a638eSSatish Balay 213b24ad042SBarry Smith PetscInt *rp,ii,nrow,_i,rmax,N,brow,bcol; 214b24ad042SBarry Smith PetscInt low,high,t,ridx,cidx,bs2=a->bs2; 2153eda8832SBarry Smith MatScalar *ap,*bap; 21680c1aa95SSatish Balay 217d64ed03dSBarry Smith PetscFunctionBegin; 21857b952d6SSatish Balay for (i=0; i<m; i++) { 2195ef9f2a5SBarry Smith if (im[i] < 0) continue; 2202515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 221d0f46423SBarry Smith if (im[i] >= mat->rmap->N) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],mat->rmap->N-1); 222639f9d9dSBarry Smith #endif 22357b952d6SSatish Balay if (im[i] >= rstart_orig && im[i] < rend_orig) { 22457b952d6SSatish Balay row = im[i] - rstart_orig; 22557b952d6SSatish Balay for (j=0; j<n; j++) { 22657b952d6SSatish Balay if (in[j] >= cstart_orig && in[j] < cend_orig){ 22757b952d6SSatish Balay col = in[j] - cstart_orig; 22857b952d6SSatish Balay if (roworiented) value = v[i*n+j]; else value = v[i+j*m]; 229f5e9677aSSatish Balay MatSetValues_SeqBAIJ_A_Private(row,col,value,addv); 23080c1aa95SSatish Balay /* ierr = MatSetValues_SeqBAIJ(baij->A,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 23173959e64SBarry Smith } else if (in[j] < 0) continue; 2322515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 233d0f46423SBarry Smith else if (in[j] >= mat->cmap->N) {SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",in[i],mat->cmap->N-1);} 234639f9d9dSBarry Smith #endif 23557b952d6SSatish Balay else { 23657b952d6SSatish Balay if (mat->was_assembled) { 237905e6a2fSBarry Smith if (!baij->colmap) { 238905e6a2fSBarry Smith ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 239905e6a2fSBarry Smith } 240aa482453SBarry Smith #if defined (PETSC_USE_CTABLE) 2410f5bd95cSBarry Smith ierr = PetscTableFind(baij->colmap,in[j]/bs + 1,&col);CHKERRQ(ierr); 242bba1ac68SSatish Balay col = col - 1; 24348e59246SSatish Balay #else 244bba1ac68SSatish Balay col = baij->colmap[in[j]/bs] - 1; 24548e59246SSatish Balay #endif 24657b952d6SSatish Balay if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) { 24757b952d6SSatish Balay ierr = DisAssemble_MPIBAIJ(mat);CHKERRQ(ierr); 2488295de27SSatish Balay col = in[j]; 2499bf004c3SSatish Balay /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */ 2509bf004c3SSatish Balay B = baij->B; 2519bf004c3SSatish Balay b = (Mat_SeqBAIJ*)(B)->data; 2529bf004c3SSatish Balay bimax=b->imax;bi=b->i;bilen=b->ilen;bj=b->j; 2539bf004c3SSatish Balay ba=b->a; 254bba1ac68SSatish Balay } else col += in[j]%bs; 2558295de27SSatish Balay } else col = in[j]; 25657b952d6SSatish Balay if (roworiented) value = v[i*n+j]; else value = v[i+j*m]; 25790da58bdSSatish Balay MatSetValues_SeqBAIJ_B_Private(row,col,value,addv); 25890da58bdSSatish Balay /* ierr = MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 25957b952d6SSatish Balay } 26057b952d6SSatish Balay } 261d64ed03dSBarry Smith } else { 26290f02eecSBarry Smith if (!baij->donotstash) { 263ff2fd236SBarry Smith if (roworiented) { 2646fa18ffdSBarry Smith ierr = MatStashValuesRow_Private(&mat->stash,im[i],n,in,v+i*n);CHKERRQ(ierr); 265ff2fd236SBarry Smith } else { 2666fa18ffdSBarry Smith ierr = MatStashValuesCol_Private(&mat->stash,im[i],n,in,v+i,m);CHKERRQ(ierr); 26757b952d6SSatish Balay } 26857b952d6SSatish Balay } 26957b952d6SSatish Balay } 27090f02eecSBarry Smith } 2713a40ed3dSBarry Smith PetscFunctionReturn(0); 27257b952d6SSatish Balay } 27357b952d6SSatish Balay 2744a2ae208SSatish Balay #undef __FUNCT__ 27597e5c40aSBarry Smith #define __FUNCT__ "MatSetValuesBlocked_MPIBAIJ" 27697e5c40aSBarry Smith PetscErrorCode MatSetValuesBlocked_MPIBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv) 277ab26458aSBarry Smith { 278ab26458aSBarry Smith Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 279dd6ea824SBarry Smith const PetscScalar *value; 280f15d580aSBarry Smith MatScalar *barray=baij->barray; 281273d9f13SBarry Smith PetscTruth roworiented = baij->roworiented; 282dfbe8321SBarry Smith PetscErrorCode ierr; 283899cda47SBarry Smith PetscInt i,j,ii,jj,row,col,rstart=baij->rstartbs; 284899cda47SBarry Smith PetscInt rend=baij->rendbs,cstart=baij->cstartbs,stepval; 285d0f46423SBarry Smith PetscInt cend=baij->cendbs,bs=mat->rmap->bs,bs2=baij->bs2; 286ab26458aSBarry Smith 287b16ae2b1SBarry Smith PetscFunctionBegin; 28830793edcSSatish Balay if(!barray) { 28982502324SSatish Balay ierr = PetscMalloc(bs2*sizeof(MatScalar),&barray);CHKERRQ(ierr); 29082502324SSatish Balay baij->barray = barray; 29130793edcSSatish Balay } 29230793edcSSatish Balay 293ab26458aSBarry Smith if (roworiented) { 294ab26458aSBarry Smith stepval = (n-1)*bs; 295ab26458aSBarry Smith } else { 296ab26458aSBarry Smith stepval = (m-1)*bs; 297ab26458aSBarry Smith } 298ab26458aSBarry Smith for (i=0; i<m; i++) { 2995ef9f2a5SBarry Smith if (im[i] < 0) continue; 3002515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 30177431f27SBarry Smith if (im[i] >= baij->Mbs) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large, row %D max %D",im[i],baij->Mbs-1); 302ab26458aSBarry Smith #endif 303ab26458aSBarry Smith if (im[i] >= rstart && im[i] < rend) { 304ab26458aSBarry Smith row = im[i] - rstart; 305ab26458aSBarry Smith for (j=0; j<n; j++) { 30615b57d14SSatish Balay /* If NumCol = 1 then a copy is not required */ 30715b57d14SSatish Balay if ((roworiented) && (n == 1)) { 308f15d580aSBarry Smith barray = (MatScalar*)v + i*bs2; 30915b57d14SSatish Balay } else if((!roworiented) && (m == 1)) { 310f15d580aSBarry Smith barray = (MatScalar*)v + j*bs2; 31115b57d14SSatish Balay } else { /* Here a copy is required */ 312ab26458aSBarry Smith if (roworiented) { 313ab26458aSBarry Smith value = v + i*(stepval+bs)*bs + j*bs; 314ab26458aSBarry Smith } else { 315ab26458aSBarry Smith value = v + j*(stepval+bs)*bs + i*bs; 316abef11f7SSatish Balay } 31747513183SBarry Smith for (ii=0; ii<bs; ii++,value+=stepval) { 31847513183SBarry Smith for (jj=0; jj<bs; jj++) { 31930793edcSSatish Balay *barray++ = *value++; 32047513183SBarry Smith } 32147513183SBarry Smith } 32230793edcSSatish Balay barray -=bs2; 32315b57d14SSatish Balay } 324abef11f7SSatish Balay 325abef11f7SSatish Balay if (in[j] >= cstart && in[j] < cend){ 326abef11f7SSatish Balay col = in[j] - cstart; 32797e5c40aSBarry Smith ierr = MatSetValuesBlocked_SeqBAIJ(baij->A,1,&row,1,&col,barray,addv);CHKERRQ(ierr); 328ab26458aSBarry Smith } 3295ef9f2a5SBarry Smith else if (in[j] < 0) continue; 3302515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 33177431f27SBarry Smith else if (in[j] >= baij->Nbs) {SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large, col %D max %D",in[j],baij->Nbs-1);} 332ab26458aSBarry Smith #endif 333ab26458aSBarry Smith else { 334ab26458aSBarry Smith if (mat->was_assembled) { 335ab26458aSBarry Smith if (!baij->colmap) { 336ab26458aSBarry Smith ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 337ab26458aSBarry Smith } 338a5eb4965SSatish Balay 3392515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 340aa482453SBarry Smith #if defined (PETSC_USE_CTABLE) 341b24ad042SBarry Smith { PetscInt data; 3420f5bd95cSBarry Smith ierr = PetscTableFind(baij->colmap,in[j]+1,&data);CHKERRQ(ierr); 34329bbc08cSBarry Smith if ((data - 1) % bs) SETERRQ(PETSC_ERR_PLIB,"Incorrect colmap"); 344fa46199cSSatish Balay } 34548e59246SSatish Balay #else 34629bbc08cSBarry Smith if ((baij->colmap[in[j]] - 1) % bs) SETERRQ(PETSC_ERR_PLIB,"Incorrect colmap"); 347a5eb4965SSatish Balay #endif 34848e59246SSatish Balay #endif 349aa482453SBarry Smith #if defined (PETSC_USE_CTABLE) 3500f5bd95cSBarry Smith ierr = PetscTableFind(baij->colmap,in[j]+1,&col);CHKERRQ(ierr); 351fa46199cSSatish Balay col = (col - 1)/bs; 35248e59246SSatish Balay #else 353a5eb4965SSatish Balay col = (baij->colmap[in[j]] - 1)/bs; 35448e59246SSatish Balay #endif 355ab26458aSBarry Smith if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) { 356ab26458aSBarry Smith ierr = DisAssemble_MPIBAIJ(mat);CHKERRQ(ierr); 357ab26458aSBarry Smith col = in[j]; 358ab26458aSBarry Smith } 359ab26458aSBarry Smith } 360ab26458aSBarry Smith else col = in[j]; 36197e5c40aSBarry Smith ierr = MatSetValuesBlocked_SeqBAIJ(baij->B,1,&row,1,&col,barray,addv);CHKERRQ(ierr); 362ab26458aSBarry Smith } 363ab26458aSBarry Smith } 364d64ed03dSBarry Smith } else { 365ab26458aSBarry Smith if (!baij->donotstash) { 366ff2fd236SBarry Smith if (roworiented) { 3676fa18ffdSBarry Smith ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 368ff2fd236SBarry Smith } else { 3696fa18ffdSBarry Smith ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 370ff2fd236SBarry Smith } 371abef11f7SSatish Balay } 372ab26458aSBarry Smith } 373ab26458aSBarry Smith } 3743a40ed3dSBarry Smith PetscFunctionReturn(0); 375ab26458aSBarry Smith } 3766fa18ffdSBarry Smith 3770bdbc534SSatish Balay #define HASH_KEY 0.6180339887 378b24ad042SBarry Smith #define HASH(size,key,tmp) (tmp = (key)*HASH_KEY,(PetscInt)((size)*(tmp-(PetscInt)tmp))) 379b24ad042SBarry Smith /* #define HASH(size,key) ((PetscInt)((size)*fmod(((key)*HASH_KEY),1))) */ 380b24ad042SBarry Smith /* #define HASH(size,key,tmp) ((PetscInt)((size)*fmod(((key)*HASH_KEY),1))) */ 3814a2ae208SSatish Balay #undef __FUNCT__ 38297e5c40aSBarry Smith #define __FUNCT__ "MatSetValues_MPIBAIJ_HT" 38397e5c40aSBarry Smith PetscErrorCode MatSetValues_MPIBAIJ_HT(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv) 3840bdbc534SSatish Balay { 3850bdbc534SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 386273d9f13SBarry Smith PetscTruth roworiented = baij->roworiented; 387dfbe8321SBarry Smith PetscErrorCode ierr; 388b24ad042SBarry Smith PetscInt i,j,row,col; 389d0f46423SBarry Smith PetscInt rstart_orig=mat->rmap->rstart; 390d0f46423SBarry Smith PetscInt rend_orig=mat->rmap->rend,Nbs=baij->Nbs; 391d0f46423SBarry Smith PetscInt h1,key,size=baij->ht_size,bs=mat->rmap->bs,*HT=baij->ht,idx; 392329f5518SBarry Smith PetscReal tmp; 3933eda8832SBarry Smith MatScalar **HD = baij->hd,value; 3942515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 395b24ad042SBarry Smith PetscInt total_ct=baij->ht_total_ct,insert_ct=baij->ht_insert_ct; 3964a15367fSSatish Balay #endif 3970bdbc534SSatish Balay 3980bdbc534SSatish Balay PetscFunctionBegin; 3990bdbc534SSatish Balay 4000bdbc534SSatish Balay for (i=0; i<m; i++) { 4012515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 40229bbc08cSBarry Smith if (im[i] < 0) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Negative row"); 403d0f46423SBarry Smith if (im[i] >= mat->rmap->N) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],mat->rmap->N-1); 4040bdbc534SSatish Balay #endif 4050bdbc534SSatish Balay row = im[i]; 406c2760754SSatish Balay if (row >= rstart_orig && row < rend_orig) { 4070bdbc534SSatish Balay for (j=0; j<n; j++) { 4080bdbc534SSatish Balay col = in[j]; 4096fa18ffdSBarry Smith if (roworiented) value = v[i*n+j]; else value = v[i+j*m]; 410b24ad042SBarry Smith /* Look up PetscInto the Hash Table */ 411c2760754SSatish Balay key = (row/bs)*Nbs+(col/bs)+1; 412c2760754SSatish Balay h1 = HASH(size,key,tmp); 4130bdbc534SSatish Balay 414c2760754SSatish Balay 415c2760754SSatish Balay idx = h1; 4162515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 417187ce0cbSSatish Balay insert_ct++; 418187ce0cbSSatish Balay total_ct++; 419187ce0cbSSatish Balay if (HT[idx] != key) { 420187ce0cbSSatish Balay for (idx=h1; (idx<size) && (HT[idx]!=key); idx++,total_ct++); 421187ce0cbSSatish Balay if (idx == size) { 422187ce0cbSSatish Balay for (idx=0; (idx<h1) && (HT[idx]!=key); idx++,total_ct++); 423187ce0cbSSatish Balay if (idx == h1) { 42477431f27SBarry Smith SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"(%D,%D) has no entry in the hash table", row, col); 425187ce0cbSSatish Balay } 426187ce0cbSSatish Balay } 427187ce0cbSSatish Balay } 428187ce0cbSSatish Balay #else 429c2760754SSatish Balay if (HT[idx] != key) { 430c2760754SSatish Balay for (idx=h1; (idx<size) && (HT[idx]!=key); idx++); 431c2760754SSatish Balay if (idx == size) { 432c2760754SSatish Balay for (idx=0; (idx<h1) && (HT[idx]!=key); idx++); 433c2760754SSatish Balay if (idx == h1) { 43477431f27SBarry Smith SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"(%D,%D) has no entry in the hash table", row, col); 435c2760754SSatish Balay } 436c2760754SSatish Balay } 437c2760754SSatish Balay } 438187ce0cbSSatish Balay #endif 439c2760754SSatish Balay /* A HASH table entry is found, so insert the values at the correct address */ 440c2760754SSatish Balay if (addv == ADD_VALUES) *(HD[idx]+ (col % bs)*bs + (row % bs)) += value; 441c2760754SSatish Balay else *(HD[idx]+ (col % bs)*bs + (row % bs)) = value; 4420bdbc534SSatish Balay } 4430bdbc534SSatish Balay } else { 4440bdbc534SSatish Balay if (!baij->donotstash) { 445ff2fd236SBarry Smith if (roworiented) { 4468798bf22SSatish Balay ierr = MatStashValuesRow_Private(&mat->stash,im[i],n,in,v+i*n);CHKERRQ(ierr); 447ff2fd236SBarry Smith } else { 4488798bf22SSatish Balay ierr = MatStashValuesCol_Private(&mat->stash,im[i],n,in,v+i,m);CHKERRQ(ierr); 4490bdbc534SSatish Balay } 4500bdbc534SSatish Balay } 4510bdbc534SSatish Balay } 4520bdbc534SSatish Balay } 4532515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 454187ce0cbSSatish Balay baij->ht_total_ct = total_ct; 455187ce0cbSSatish Balay baij->ht_insert_ct = insert_ct; 456187ce0cbSSatish Balay #endif 4570bdbc534SSatish Balay PetscFunctionReturn(0); 4580bdbc534SSatish Balay } 4590bdbc534SSatish Balay 4604a2ae208SSatish Balay #undef __FUNCT__ 46197e5c40aSBarry Smith #define __FUNCT__ "MatSetValuesBlocked_MPIBAIJ_HT" 46297e5c40aSBarry Smith PetscErrorCode MatSetValuesBlocked_MPIBAIJ_HT(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv) 4630bdbc534SSatish Balay { 4640bdbc534SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 465273d9f13SBarry Smith PetscTruth roworiented = baij->roworiented; 466dfbe8321SBarry Smith PetscErrorCode ierr; 467b24ad042SBarry Smith PetscInt i,j,ii,jj,row,col; 468899cda47SBarry Smith PetscInt rstart=baij->rstartbs; 469d0f46423SBarry Smith PetscInt rend=mat->rmap->rend,stepval,bs=mat->rmap->bs,bs2=baij->bs2,nbs2=n*bs2; 470b24ad042SBarry Smith PetscInt h1,key,size=baij->ht_size,idx,*HT=baij->ht,Nbs=baij->Nbs; 471329f5518SBarry Smith PetscReal tmp; 4723eda8832SBarry Smith MatScalar **HD = baij->hd,*baij_a; 473dd6ea824SBarry Smith const PetscScalar *v_t,*value; 4742515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 475b24ad042SBarry Smith PetscInt total_ct=baij->ht_total_ct,insert_ct=baij->ht_insert_ct; 4764a15367fSSatish Balay #endif 4770bdbc534SSatish Balay 478d0a41580SSatish Balay PetscFunctionBegin; 479d0a41580SSatish Balay 4800bdbc534SSatish Balay if (roworiented) { 4810bdbc534SSatish Balay stepval = (n-1)*bs; 4820bdbc534SSatish Balay } else { 4830bdbc534SSatish Balay stepval = (m-1)*bs; 4840bdbc534SSatish Balay } 4850bdbc534SSatish Balay for (i=0; i<m; i++) { 4862515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 48777431f27SBarry Smith if (im[i] < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %D",im[i]); 48877431f27SBarry Smith if (im[i] >= baij->Mbs) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],baij->Mbs-1); 4890bdbc534SSatish Balay #endif 4900bdbc534SSatish Balay row = im[i]; 491ab715e2cSSatish Balay v_t = v + i*nbs2; 492c2760754SSatish Balay if (row >= rstart && row < rend) { 4930bdbc534SSatish Balay for (j=0; j<n; j++) { 4940bdbc534SSatish Balay col = in[j]; 4950bdbc534SSatish Balay 4960bdbc534SSatish Balay /* Look up into the Hash Table */ 497c2760754SSatish Balay key = row*Nbs+col+1; 498c2760754SSatish Balay h1 = HASH(size,key,tmp); 4990bdbc534SSatish Balay 500c2760754SSatish Balay idx = h1; 5012515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 502187ce0cbSSatish Balay total_ct++; 503187ce0cbSSatish Balay insert_ct++; 504187ce0cbSSatish Balay if (HT[idx] != key) { 505187ce0cbSSatish Balay for (idx=h1; (idx<size) && (HT[idx]!=key); idx++,total_ct++); 506187ce0cbSSatish Balay if (idx == size) { 507187ce0cbSSatish Balay for (idx=0; (idx<h1) && (HT[idx]!=key); idx++,total_ct++); 508187ce0cbSSatish Balay if (idx == h1) { 50977431f27SBarry Smith SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"(%D,%D) has no entry in the hash table", row, col); 510187ce0cbSSatish Balay } 511187ce0cbSSatish Balay } 512187ce0cbSSatish Balay } 513187ce0cbSSatish Balay #else 514c2760754SSatish Balay if (HT[idx] != key) { 515c2760754SSatish Balay for (idx=h1; (idx<size) && (HT[idx]!=key); idx++); 516c2760754SSatish Balay if (idx == size) { 517c2760754SSatish Balay for (idx=0; (idx<h1) && (HT[idx]!=key); idx++); 518c2760754SSatish Balay if (idx == h1) { 51977431f27SBarry Smith SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"(%D,%D) has no entry in the hash table", row, col); 520c2760754SSatish Balay } 521c2760754SSatish Balay } 522c2760754SSatish Balay } 523187ce0cbSSatish Balay #endif 524c2760754SSatish Balay baij_a = HD[idx]; 5250bdbc534SSatish Balay if (roworiented) { 526c2760754SSatish Balay /*value = v + i*(stepval+bs)*bs + j*bs;*/ 527187ce0cbSSatish Balay /* value = v + (i*(stepval+bs)+j)*bs; */ 528187ce0cbSSatish Balay value = v_t; 529187ce0cbSSatish Balay v_t += bs; 530fef45726SSatish Balay if (addv == ADD_VALUES) { 531c2760754SSatish Balay for (ii=0; ii<bs; ii++,value+=stepval) { 532c2760754SSatish Balay for (jj=ii; jj<bs2; jj+=bs) { 533fef45726SSatish Balay baij_a[jj] += *value++; 534b4cc0f5aSSatish Balay } 535b4cc0f5aSSatish Balay } 536fef45726SSatish Balay } else { 537c2760754SSatish Balay for (ii=0; ii<bs; ii++,value+=stepval) { 538c2760754SSatish Balay for (jj=ii; jj<bs2; jj+=bs) { 539fef45726SSatish Balay baij_a[jj] = *value++; 540fef45726SSatish Balay } 541fef45726SSatish Balay } 542fef45726SSatish Balay } 5430bdbc534SSatish Balay } else { 5440bdbc534SSatish Balay value = v + j*(stepval+bs)*bs + i*bs; 545fef45726SSatish Balay if (addv == ADD_VALUES) { 546b4cc0f5aSSatish Balay for (ii=0; ii<bs; ii++,value+=stepval,baij_a+=bs) { 5470bdbc534SSatish Balay for (jj=0; jj<bs; jj++) { 548fef45726SSatish Balay baij_a[jj] += *value++; 549fef45726SSatish Balay } 550fef45726SSatish Balay } 551fef45726SSatish Balay } else { 552fef45726SSatish Balay for (ii=0; ii<bs; ii++,value+=stepval,baij_a+=bs) { 553fef45726SSatish Balay for (jj=0; jj<bs; jj++) { 554fef45726SSatish Balay baij_a[jj] = *value++; 555fef45726SSatish Balay } 556b4cc0f5aSSatish Balay } 5570bdbc534SSatish Balay } 5580bdbc534SSatish Balay } 5590bdbc534SSatish Balay } 5600bdbc534SSatish Balay } else { 5610bdbc534SSatish Balay if (!baij->donotstash) { 5620bdbc534SSatish Balay if (roworiented) { 5638798bf22SSatish Balay ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 5640bdbc534SSatish Balay } else { 5658798bf22SSatish Balay ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 5660bdbc534SSatish Balay } 5670bdbc534SSatish Balay } 5680bdbc534SSatish Balay } 5690bdbc534SSatish Balay } 5702515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 571187ce0cbSSatish Balay baij->ht_total_ct = total_ct; 572187ce0cbSSatish Balay baij->ht_insert_ct = insert_ct; 573187ce0cbSSatish Balay #endif 5740bdbc534SSatish Balay PetscFunctionReturn(0); 5750bdbc534SSatish Balay } 576133cdb44SSatish Balay 5774a2ae208SSatish Balay #undef __FUNCT__ 5784a2ae208SSatish Balay #define __FUNCT__ "MatGetValues_MPIBAIJ" 579b24ad042SBarry Smith PetscErrorCode MatGetValues_MPIBAIJ(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[]) 580d6de1c52SSatish Balay { 581d6de1c52SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 5826849ba73SBarry Smith PetscErrorCode ierr; 583d0f46423SBarry Smith PetscInt bs=mat->rmap->bs,i,j,bsrstart = mat->rmap->rstart,bsrend = mat->rmap->rend; 584d0f46423SBarry Smith PetscInt bscstart = mat->cmap->rstart,bscend = mat->cmap->rend,row,col,data; 585d6de1c52SSatish Balay 586133cdb44SSatish Balay PetscFunctionBegin; 587d6de1c52SSatish Balay for (i=0; i<m; i++) { 58897e567efSBarry Smith if (idxm[i] < 0) continue; /* SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %D",idxm[i]);*/ 589d0f46423SBarry Smith if (idxm[i] >= mat->rmap->N) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",idxm[i],mat->rmap->N-1); 590d6de1c52SSatish Balay if (idxm[i] >= bsrstart && idxm[i] < bsrend) { 591d6de1c52SSatish Balay row = idxm[i] - bsrstart; 592d6de1c52SSatish Balay for (j=0; j<n; j++) { 59397e567efSBarry Smith if (idxn[j] < 0) continue; /* SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Negative column: %D",idxn[j]); */ 594d0f46423SBarry Smith if (idxn[j] >= mat->cmap->N) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",idxn[j],mat->cmap->N-1); 595d6de1c52SSatish Balay if (idxn[j] >= bscstart && idxn[j] < bscend){ 596d6de1c52SSatish Balay col = idxn[j] - bscstart; 59798dd23e9SBarry Smith ierr = MatGetValues_SeqBAIJ(baij->A,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr); 598d64ed03dSBarry Smith } else { 599905e6a2fSBarry Smith if (!baij->colmap) { 600905e6a2fSBarry Smith ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 601905e6a2fSBarry Smith } 602aa482453SBarry Smith #if defined (PETSC_USE_CTABLE) 6030f5bd95cSBarry Smith ierr = PetscTableFind(baij->colmap,idxn[j]/bs+1,&data);CHKERRQ(ierr); 604fa46199cSSatish Balay data --; 60548e59246SSatish Balay #else 60648e59246SSatish Balay data = baij->colmap[idxn[j]/bs]-1; 60748e59246SSatish Balay #endif 60848e59246SSatish Balay if((data < 0) || (baij->garray[data/bs] != idxn[j]/bs)) *(v+i*n+j) = 0.0; 609d9d09a02SSatish Balay else { 61048e59246SSatish Balay col = data + idxn[j]%bs; 61198dd23e9SBarry Smith ierr = MatGetValues_SeqBAIJ(baij->B,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr); 612d6de1c52SSatish Balay } 613d6de1c52SSatish Balay } 614d6de1c52SSatish Balay } 615d64ed03dSBarry Smith } else { 61629bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"Only local values currently supported"); 617d6de1c52SSatish Balay } 618d6de1c52SSatish Balay } 6193a40ed3dSBarry Smith PetscFunctionReturn(0); 620d6de1c52SSatish Balay } 621d6de1c52SSatish Balay 6224a2ae208SSatish Balay #undef __FUNCT__ 6234a2ae208SSatish Balay #define __FUNCT__ "MatNorm_MPIBAIJ" 624dfbe8321SBarry Smith PetscErrorCode MatNorm_MPIBAIJ(Mat mat,NormType type,PetscReal *nrm) 625d6de1c52SSatish Balay { 626d6de1c52SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 627d6de1c52SSatish Balay Mat_SeqBAIJ *amat = (Mat_SeqBAIJ*)baij->A->data,*bmat = (Mat_SeqBAIJ*)baij->B->data; 628dfbe8321SBarry Smith PetscErrorCode ierr; 629d0f46423SBarry Smith PetscInt i,j,bs2=baij->bs2,bs=baij->A->rmap->bs,nz,row,col; 630329f5518SBarry Smith PetscReal sum = 0.0; 6313eda8832SBarry Smith MatScalar *v; 632d6de1c52SSatish Balay 633d64ed03dSBarry Smith PetscFunctionBegin; 634d6de1c52SSatish Balay if (baij->size == 1) { 635064f8208SBarry Smith ierr = MatNorm(baij->A,type,nrm);CHKERRQ(ierr); 636d6de1c52SSatish Balay } else { 637d6de1c52SSatish Balay if (type == NORM_FROBENIUS) { 638d6de1c52SSatish Balay v = amat->a; 6398a62d963SHong Zhang nz = amat->nz*bs2; 6408a62d963SHong Zhang for (i=0; i<nz; i++) { 641aa482453SBarry Smith #if defined(PETSC_USE_COMPLEX) 642329f5518SBarry Smith sum += PetscRealPart(PetscConj(*v)*(*v)); v++; 643d6de1c52SSatish Balay #else 644d6de1c52SSatish Balay sum += (*v)*(*v); v++; 645d6de1c52SSatish Balay #endif 646d6de1c52SSatish Balay } 647d6de1c52SSatish Balay v = bmat->a; 6488a62d963SHong Zhang nz = bmat->nz*bs2; 6498a62d963SHong Zhang for (i=0; i<nz; i++) { 650aa482453SBarry Smith #if defined(PETSC_USE_COMPLEX) 651329f5518SBarry Smith sum += PetscRealPart(PetscConj(*v)*(*v)); v++; 652d6de1c52SSatish Balay #else 653d6de1c52SSatish Balay sum += (*v)*(*v); v++; 654d6de1c52SSatish Balay #endif 655d6de1c52SSatish Balay } 6567adad957SLisandro Dalcin ierr = MPI_Allreduce(&sum,nrm,1,MPIU_REAL,MPI_SUM,((PetscObject)mat)->comm);CHKERRQ(ierr); 657064f8208SBarry Smith *nrm = sqrt(*nrm); 6588a62d963SHong Zhang } else if (type == NORM_1) { /* max column sum */ 6598a62d963SHong Zhang PetscReal *tmp,*tmp2; 660899cda47SBarry Smith PetscInt *jj,*garray=baij->garray,cstart=baij->rstartbs; 661d0f46423SBarry Smith ierr = PetscMalloc((2*mat->cmap->N+1)*sizeof(PetscReal),&tmp);CHKERRQ(ierr); 662d0f46423SBarry Smith tmp2 = tmp + mat->cmap->N; 663d0f46423SBarry Smith ierr = PetscMemzero(tmp,mat->cmap->N*sizeof(PetscReal));CHKERRQ(ierr); 6648a62d963SHong Zhang v = amat->a; jj = amat->j; 6658a62d963SHong Zhang for (i=0; i<amat->nz; i++) { 6668a62d963SHong Zhang for (j=0; j<bs; j++){ 6678a62d963SHong Zhang col = bs*(cstart + *jj) + j; /* column index */ 6688a62d963SHong Zhang for (row=0; row<bs; row++){ 6698a62d963SHong Zhang tmp[col] += PetscAbsScalar(*v); v++; 6708a62d963SHong Zhang } 6718a62d963SHong Zhang } 6728a62d963SHong Zhang jj++; 6738a62d963SHong Zhang } 6748a62d963SHong Zhang v = bmat->a; jj = bmat->j; 6758a62d963SHong Zhang for (i=0; i<bmat->nz; i++) { 6768a62d963SHong Zhang for (j=0; j<bs; j++){ 6778a62d963SHong Zhang col = bs*garray[*jj] + j; 6788a62d963SHong Zhang for (row=0; row<bs; row++){ 6798a62d963SHong Zhang tmp[col] += PetscAbsScalar(*v); v++; 6808a62d963SHong Zhang } 6818a62d963SHong Zhang } 6828a62d963SHong Zhang jj++; 6838a62d963SHong Zhang } 684d0f46423SBarry Smith ierr = MPI_Allreduce(tmp,tmp2,mat->cmap->N,MPIU_REAL,MPI_SUM,((PetscObject)mat)->comm);CHKERRQ(ierr); 6858a62d963SHong Zhang *nrm = 0.0; 686d0f46423SBarry Smith for (j=0; j<mat->cmap->N; j++) { 6878a62d963SHong Zhang if (tmp2[j] > *nrm) *nrm = tmp2[j]; 6888a62d963SHong Zhang } 6898a62d963SHong Zhang ierr = PetscFree(tmp);CHKERRQ(ierr); 6908a62d963SHong Zhang } else if (type == NORM_INFINITY) { /* max row sum */ 691577dd1f9SKris Buschelman PetscReal *sums; 692577dd1f9SKris Buschelman ierr = PetscMalloc(bs*sizeof(PetscReal),&sums);CHKERRQ(ierr) 6938a62d963SHong Zhang sum = 0.0; 6948a62d963SHong Zhang for (j=0; j<amat->mbs; j++) { 6958a62d963SHong Zhang for (row=0; row<bs; row++) sums[row] = 0.0; 6968a62d963SHong Zhang v = amat->a + bs2*amat->i[j]; 6978a62d963SHong Zhang nz = amat->i[j+1]-amat->i[j]; 6988a62d963SHong Zhang for (i=0; i<nz; i++) { 6998a62d963SHong Zhang for (col=0; col<bs; col++){ 7008a62d963SHong Zhang for (row=0; row<bs; row++){ 7018a62d963SHong Zhang sums[row] += PetscAbsScalar(*v); v++; 7028a62d963SHong Zhang } 7038a62d963SHong Zhang } 7048a62d963SHong Zhang } 7058a62d963SHong Zhang v = bmat->a + bs2*bmat->i[j]; 7068a62d963SHong Zhang nz = bmat->i[j+1]-bmat->i[j]; 7078a62d963SHong Zhang for (i=0; i<nz; i++) { 7088a62d963SHong Zhang for (col=0; col<bs; col++){ 7098a62d963SHong Zhang for (row=0; row<bs; row++){ 7108a62d963SHong Zhang sums[row] += PetscAbsScalar(*v); v++; 7118a62d963SHong Zhang } 7128a62d963SHong Zhang } 7138a62d963SHong Zhang } 7148a62d963SHong Zhang for (row=0; row<bs; row++){ 7158a62d963SHong Zhang if (sums[row] > sum) sum = sums[row]; 7168a62d963SHong Zhang } 7178a62d963SHong Zhang } 7187adad957SLisandro Dalcin ierr = MPI_Allreduce(&sum,nrm,1,MPIU_REAL,MPI_MAX,((PetscObject)mat)->comm);CHKERRQ(ierr); 719577dd1f9SKris Buschelman ierr = PetscFree(sums);CHKERRQ(ierr); 720d64ed03dSBarry Smith } else { 72129bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"No support for this norm yet"); 722d6de1c52SSatish Balay } 723d64ed03dSBarry Smith } 7243a40ed3dSBarry Smith PetscFunctionReturn(0); 725d6de1c52SSatish Balay } 72657b952d6SSatish Balay 727fef45726SSatish Balay /* 728fef45726SSatish Balay Creates the hash table, and sets the table 729fef45726SSatish Balay This table is created only once. 730fef45726SSatish Balay If new entried need to be added to the matrix 731fef45726SSatish Balay then the hash table has to be destroyed and 732fef45726SSatish Balay recreated. 733fef45726SSatish Balay */ 7344a2ae208SSatish Balay #undef __FUNCT__ 7354a2ae208SSatish Balay #define __FUNCT__ "MatCreateHashTable_MPIBAIJ_Private" 736dfbe8321SBarry Smith PetscErrorCode MatCreateHashTable_MPIBAIJ_Private(Mat mat,PetscReal factor) 737596b8d2eSBarry Smith { 738596b8d2eSBarry Smith Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 739596b8d2eSBarry Smith Mat A = baij->A,B=baij->B; 740596b8d2eSBarry Smith Mat_SeqBAIJ *a=(Mat_SeqBAIJ *)A->data,*b=(Mat_SeqBAIJ *)B->data; 741b24ad042SBarry Smith PetscInt i,j,k,nz=a->nz+b->nz,h1,*ai=a->i,*aj=a->j,*bi=b->i,*bj=b->j; 7426849ba73SBarry Smith PetscErrorCode ierr; 743899cda47SBarry Smith PetscInt size,bs2=baij->bs2,rstart=baij->rstartbs; 744899cda47SBarry Smith PetscInt cstart=baij->cstartbs,*garray=baij->garray,row,col,Nbs=baij->Nbs; 745b24ad042SBarry Smith PetscInt *HT,key; 7463eda8832SBarry Smith MatScalar **HD; 747329f5518SBarry Smith PetscReal tmp; 7486cf91177SBarry Smith #if defined(PETSC_USE_INFO) 749b24ad042SBarry Smith PetscInt ct=0,max=0; 7504a15367fSSatish Balay #endif 751fef45726SSatish Balay 752d64ed03dSBarry Smith PetscFunctionBegin; 753b24ad042SBarry Smith baij->ht_size=(PetscInt)(factor*nz); 7540bdbc534SSatish Balay size = baij->ht_size; 755fef45726SSatish Balay 7560bdbc534SSatish Balay if (baij->ht) { 7570bdbc534SSatish Balay PetscFunctionReturn(0); 758596b8d2eSBarry Smith } 7590bdbc534SSatish Balay 760fef45726SSatish Balay /* Allocate Memory for Hash Table */ 761b24ad042SBarry Smith ierr = PetscMalloc((size)*(sizeof(PetscInt)+sizeof(MatScalar*))+1,&baij->hd);CHKERRQ(ierr); 762b24ad042SBarry Smith baij->ht = (PetscInt*)(baij->hd + size); 763b9e4cc15SSatish Balay HD = baij->hd; 764a07cd24cSSatish Balay HT = baij->ht; 765b9e4cc15SSatish Balay 766b9e4cc15SSatish Balay 767b24ad042SBarry Smith ierr = PetscMemzero(HD,size*(sizeof(PetscInt)+sizeof(PetscScalar*)));CHKERRQ(ierr); 7680bdbc534SSatish Balay 769596b8d2eSBarry Smith 770596b8d2eSBarry Smith /* Loop Over A */ 7710bdbc534SSatish Balay for (i=0; i<a->mbs; i++) { 772596b8d2eSBarry Smith for (j=ai[i]; j<ai[i+1]; j++) { 7730bdbc534SSatish Balay row = i+rstart; 7740bdbc534SSatish Balay col = aj[j]+cstart; 775596b8d2eSBarry Smith 776187ce0cbSSatish Balay key = row*Nbs + col + 1; 777c2760754SSatish Balay h1 = HASH(size,key,tmp); 7780bdbc534SSatish Balay for (k=0; k<size; k++){ 779958c9bccSBarry Smith if (!HT[(h1+k)%size]) { 7800bdbc534SSatish Balay HT[(h1+k)%size] = key; 7810bdbc534SSatish Balay HD[(h1+k)%size] = a->a + j*bs2; 782596b8d2eSBarry Smith break; 7836cf91177SBarry Smith #if defined(PETSC_USE_INFO) 784187ce0cbSSatish Balay } else { 785187ce0cbSSatish Balay ct++; 786187ce0cbSSatish Balay #endif 787596b8d2eSBarry Smith } 788187ce0cbSSatish Balay } 7896cf91177SBarry Smith #if defined(PETSC_USE_INFO) 790187ce0cbSSatish Balay if (k> max) max = k; 791187ce0cbSSatish Balay #endif 792596b8d2eSBarry Smith } 793596b8d2eSBarry Smith } 794596b8d2eSBarry Smith /* Loop Over B */ 7950bdbc534SSatish Balay for (i=0; i<b->mbs; i++) { 796596b8d2eSBarry Smith for (j=bi[i]; j<bi[i+1]; j++) { 7970bdbc534SSatish Balay row = i+rstart; 7980bdbc534SSatish Balay col = garray[bj[j]]; 799187ce0cbSSatish Balay key = row*Nbs + col + 1; 800c2760754SSatish Balay h1 = HASH(size,key,tmp); 8010bdbc534SSatish Balay for (k=0; k<size; k++){ 802958c9bccSBarry Smith if (!HT[(h1+k)%size]) { 8030bdbc534SSatish Balay HT[(h1+k)%size] = key; 8040bdbc534SSatish Balay HD[(h1+k)%size] = b->a + j*bs2; 805596b8d2eSBarry Smith break; 8066cf91177SBarry Smith #if defined(PETSC_USE_INFO) 807187ce0cbSSatish Balay } else { 808187ce0cbSSatish Balay ct++; 809187ce0cbSSatish Balay #endif 810596b8d2eSBarry Smith } 811187ce0cbSSatish Balay } 8126cf91177SBarry Smith #if defined(PETSC_USE_INFO) 813187ce0cbSSatish Balay if (k> max) max = k; 814187ce0cbSSatish Balay #endif 815596b8d2eSBarry Smith } 816596b8d2eSBarry Smith } 817596b8d2eSBarry Smith 818596b8d2eSBarry Smith /* Print Summary */ 8196cf91177SBarry Smith #if defined(PETSC_USE_INFO) 820c38d4ed2SBarry Smith for (i=0,j=0; i<size; i++) { 821596b8d2eSBarry Smith if (HT[i]) {j++;} 822c38d4ed2SBarry Smith } 8231e2582c4SBarry Smith ierr = PetscInfo2(mat,"Average Search = %5.2f,max search = %D\n",(!j)? 0.0:((PetscReal)(ct+j))/j,max);CHKERRQ(ierr); 824187ce0cbSSatish Balay #endif 8253a40ed3dSBarry Smith PetscFunctionReturn(0); 826596b8d2eSBarry Smith } 82757b952d6SSatish Balay 8284a2ae208SSatish Balay #undef __FUNCT__ 8294a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyBegin_MPIBAIJ" 830dfbe8321SBarry Smith PetscErrorCode MatAssemblyBegin_MPIBAIJ(Mat mat,MatAssemblyType mode) 831bbb85fb3SSatish Balay { 832bbb85fb3SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 833dfbe8321SBarry Smith PetscErrorCode ierr; 834b24ad042SBarry Smith PetscInt nstash,reallocs; 835bbb85fb3SSatish Balay InsertMode addv; 836bbb85fb3SSatish Balay 837bbb85fb3SSatish Balay PetscFunctionBegin; 838bbb85fb3SSatish Balay if (baij->donotstash) { 839bbb85fb3SSatish Balay PetscFunctionReturn(0); 840bbb85fb3SSatish Balay } 841bbb85fb3SSatish Balay 842bbb85fb3SSatish Balay /* make sure all processors are either in INSERTMODE or ADDMODE */ 8437adad957SLisandro Dalcin ierr = MPI_Allreduce(&mat->insertmode,&addv,1,MPI_INT,MPI_BOR,((PetscObject)mat)->comm);CHKERRQ(ierr); 844bbb85fb3SSatish Balay if (addv == (ADD_VALUES|INSERT_VALUES)) { 84529bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Some processors inserted others added"); 846bbb85fb3SSatish Balay } 847bbb85fb3SSatish Balay mat->insertmode = addv; /* in case this processor had no cache */ 848bbb85fb3SSatish Balay 849d0f46423SBarry Smith ierr = MatStashScatterBegin_Private(mat,&mat->stash,mat->rmap->range);CHKERRQ(ierr); 8501e2582c4SBarry Smith ierr = MatStashScatterBegin_Private(mat,&mat->bstash,baij->rangebs);CHKERRQ(ierr); 8518798bf22SSatish Balay ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr); 8521e2582c4SBarry Smith ierr = PetscInfo2(mat,"Stash has %D entries,uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr); 85346680499SSatish Balay ierr = MatStashGetInfo_Private(&mat->bstash,&nstash,&reallocs);CHKERRQ(ierr); 8541e2582c4SBarry Smith ierr = PetscInfo2(mat,"Block-Stash has %D entries, uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr); 855bbb85fb3SSatish Balay PetscFunctionReturn(0); 856bbb85fb3SSatish Balay } 857bbb85fb3SSatish Balay 8584a2ae208SSatish Balay #undef __FUNCT__ 8594a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyEnd_MPIBAIJ" 860dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_MPIBAIJ(Mat mat,MatAssemblyType mode) 861bbb85fb3SSatish Balay { 862bbb85fb3SSatish Balay Mat_MPIBAIJ *baij=(Mat_MPIBAIJ*)mat->data; 86391c97fd4SSatish Balay Mat_SeqBAIJ *a=(Mat_SeqBAIJ*)baij->A->data; 8646849ba73SBarry Smith PetscErrorCode ierr; 865b24ad042SBarry Smith PetscInt i,j,rstart,ncols,flg,bs2=baij->bs2; 866e44c0bd4SBarry Smith PetscInt *row,*col; 867e44c0bd4SBarry Smith PetscTruth r1,r2,r3,other_disassembled; 8683eda8832SBarry Smith MatScalar *val; 869bbb85fb3SSatish Balay InsertMode addv = mat->insertmode; 870b24ad042SBarry Smith PetscMPIInt n; 871bbb85fb3SSatish Balay 87291c97fd4SSatish Balay /* do not use 'b=(Mat_SeqBAIJ*)baij->B->data' as B can be reset in disassembly */ 873bbb85fb3SSatish Balay PetscFunctionBegin; 874bbb85fb3SSatish Balay if (!baij->donotstash) { 875a2d1c673SSatish Balay while (1) { 8768798bf22SSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 877a2d1c673SSatish Balay if (!flg) break; 878a2d1c673SSatish Balay 879bbb85fb3SSatish Balay for (i=0; i<n;) { 880bbb85fb3SSatish Balay /* Now identify the consecutive vals belonging to the same row */ 881bbb85fb3SSatish Balay for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; } 882bbb85fb3SSatish Balay if (j < n) ncols = j-i; 883bbb85fb3SSatish Balay else ncols = n-i; 884bbb85fb3SSatish Balay /* Now assemble all these values with a single function call */ 88597e5c40aSBarry Smith ierr = MatSetValues_MPIBAIJ(mat,1,row+i,ncols,col+i,val+i,addv);CHKERRQ(ierr); 886bbb85fb3SSatish Balay i = j; 887bbb85fb3SSatish Balay } 888bbb85fb3SSatish Balay } 8898798bf22SSatish Balay ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr); 890a2d1c673SSatish Balay /* Now process the block-stash. Since the values are stashed column-oriented, 891a2d1c673SSatish Balay set the roworiented flag to column oriented, and after MatSetValues() 892a2d1c673SSatish Balay restore the original flags */ 893a2d1c673SSatish Balay r1 = baij->roworiented; 894a2d1c673SSatish Balay r2 = a->roworiented; 89591c97fd4SSatish Balay r3 = ((Mat_SeqBAIJ*)baij->B->data)->roworiented; 8967c922b88SBarry Smith baij->roworiented = PETSC_FALSE; 8977c922b88SBarry Smith a->roworiented = PETSC_FALSE; 89891c97fd4SSatish Balay (((Mat_SeqBAIJ*)baij->B->data))->roworiented = PETSC_FALSE; /* b->roworiented */ 899a2d1c673SSatish Balay while (1) { 9008798bf22SSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->bstash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 901a2d1c673SSatish Balay if (!flg) break; 902a2d1c673SSatish Balay 903a2d1c673SSatish Balay for (i=0; i<n;) { 904a2d1c673SSatish Balay /* Now identify the consecutive vals belonging to the same row */ 905a2d1c673SSatish Balay for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; } 906a2d1c673SSatish Balay if (j < n) ncols = j-i; 907a2d1c673SSatish Balay else ncols = n-i; 90897e5c40aSBarry Smith ierr = MatSetValuesBlocked_MPIBAIJ(mat,1,row+i,ncols,col+i,val+i*bs2,addv);CHKERRQ(ierr); 909a2d1c673SSatish Balay i = j; 910a2d1c673SSatish Balay } 911a2d1c673SSatish Balay } 9128798bf22SSatish Balay ierr = MatStashScatterEnd_Private(&mat->bstash);CHKERRQ(ierr); 913a2d1c673SSatish Balay baij->roworiented = r1; 914a2d1c673SSatish Balay a->roworiented = r2; 91591c97fd4SSatish Balay ((Mat_SeqBAIJ*)baij->B->data)->roworiented = r3; /* b->roworiented */ 916bbb85fb3SSatish Balay } 917bbb85fb3SSatish Balay 918bbb85fb3SSatish Balay ierr = MatAssemblyBegin(baij->A,mode);CHKERRQ(ierr); 919bbb85fb3SSatish Balay ierr = MatAssemblyEnd(baij->A,mode);CHKERRQ(ierr); 920bbb85fb3SSatish Balay 921bbb85fb3SSatish Balay /* determine if any processor has disassembled, if so we must 922bbb85fb3SSatish Balay also disassemble ourselfs, in order that we may reassemble. */ 923bbb85fb3SSatish Balay /* 924bbb85fb3SSatish Balay if nonzero structure of submatrix B cannot change then we know that 925bbb85fb3SSatish Balay no processor disassembled thus we can skip this stuff 926bbb85fb3SSatish Balay */ 927bbb85fb3SSatish Balay if (!((Mat_SeqBAIJ*)baij->B->data)->nonew) { 9287adad957SLisandro Dalcin ierr = MPI_Allreduce(&mat->was_assembled,&other_disassembled,1,MPI_INT,MPI_PROD,((PetscObject)mat)->comm);CHKERRQ(ierr); 929bbb85fb3SSatish Balay if (mat->was_assembled && !other_disassembled) { 930bbb85fb3SSatish Balay ierr = DisAssemble_MPIBAIJ(mat);CHKERRQ(ierr); 931bbb85fb3SSatish Balay } 932bbb85fb3SSatish Balay } 933bbb85fb3SSatish Balay 934bbb85fb3SSatish Balay if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) { 935bbb85fb3SSatish Balay ierr = MatSetUpMultiply_MPIBAIJ(mat);CHKERRQ(ierr); 936bbb85fb3SSatish Balay } 93791c97fd4SSatish Balay ((Mat_SeqBAIJ*)baij->B->data)->compressedrow.use = PETSC_TRUE; /* b->compressedrow.use */ 938bbb85fb3SSatish Balay ierr = MatAssemblyBegin(baij->B,mode);CHKERRQ(ierr); 939bbb85fb3SSatish Balay ierr = MatAssemblyEnd(baij->B,mode);CHKERRQ(ierr); 940bbb85fb3SSatish Balay 9416cf91177SBarry Smith #if defined(PETSC_USE_INFO) 942bbb85fb3SSatish Balay if (baij->ht && mode== MAT_FINAL_ASSEMBLY) { 9431e2582c4SBarry Smith ierr = PetscInfo1(mat,"Average Hash Table Search in MatSetValues = %5.2f\n",((PetscReal)baij->ht_total_ct)/baij->ht_insert_ct);CHKERRQ(ierr); 944bbb85fb3SSatish Balay baij->ht_total_ct = 0; 945bbb85fb3SSatish Balay baij->ht_insert_ct = 0; 946bbb85fb3SSatish Balay } 947bbb85fb3SSatish Balay #endif 948bbb85fb3SSatish Balay if (baij->ht_flag && !baij->ht && mode == MAT_FINAL_ASSEMBLY) { 949bbb85fb3SSatish Balay ierr = MatCreateHashTable_MPIBAIJ_Private(mat,baij->ht_fact);CHKERRQ(ierr); 950bbb85fb3SSatish Balay mat->ops->setvalues = MatSetValues_MPIBAIJ_HT; 951bbb85fb3SSatish Balay mat->ops->setvaluesblocked = MatSetValuesBlocked_MPIBAIJ_HT; 952bbb85fb3SSatish Balay } 953bbb85fb3SSatish Balay 954606d414cSSatish Balay ierr = PetscFree(baij->rowvalues);CHKERRQ(ierr); 955606d414cSSatish Balay baij->rowvalues = 0; 956bbb85fb3SSatish Balay PetscFunctionReturn(0); 957bbb85fb3SSatish Balay } 95857b952d6SSatish Balay 9594a2ae208SSatish Balay #undef __FUNCT__ 9604a2ae208SSatish Balay #define __FUNCT__ "MatView_MPIBAIJ_ASCIIorDraworSocket" 9616849ba73SBarry Smith static PetscErrorCode MatView_MPIBAIJ_ASCIIorDraworSocket(Mat mat,PetscViewer viewer) 96257b952d6SSatish Balay { 96357b952d6SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 964dfbe8321SBarry Smith PetscErrorCode ierr; 965b24ad042SBarry Smith PetscMPIInt size = baij->size,rank = baij->rank; 966d0f46423SBarry Smith PetscInt bs = mat->rmap->bs; 96732077d6dSBarry Smith PetscTruth iascii,isdraw; 968b0a32e0cSBarry Smith PetscViewer sviewer; 969f3ef73ceSBarry Smith PetscViewerFormat format; 97057b952d6SSatish Balay 971d64ed03dSBarry Smith PetscFunctionBegin; 97232077d6dSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&iascii);CHKERRQ(ierr); 973fb9695e5SSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr); 97432077d6dSBarry Smith if (iascii) { 975b0a32e0cSBarry Smith ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr); 976456192e2SBarry Smith if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 9774e220ebcSLois Curfman McInnes MatInfo info; 9787adad957SLisandro Dalcin ierr = MPI_Comm_rank(((PetscObject)mat)->comm,&rank);CHKERRQ(ierr); 979d41123aaSBarry Smith ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr); 98077431f27SBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Local rows %D nz %D nz alloced %D bs %D mem %D\n", 981d0f46423SBarry Smith rank,mat->rmap->N,(PetscInt)info.nz_used*bs,(PetscInt)info.nz_allocated*bs, 982d0f46423SBarry Smith mat->rmap->bs,(PetscInt)info.memory);CHKERRQ(ierr); 983d132466eSBarry Smith ierr = MatGetInfo(baij->A,MAT_LOCAL,&info);CHKERRQ(ierr); 98477431f27SBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] on-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used*bs);CHKERRQ(ierr); 985d132466eSBarry Smith ierr = MatGetInfo(baij->B,MAT_LOCAL,&info);CHKERRQ(ierr); 98677431f27SBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] off-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used*bs);CHKERRQ(ierr); 987b0a32e0cSBarry Smith ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 98807d81ca4SBarry Smith ierr = PetscViewerASCIIPrintf(viewer,"Information on VecScatter used in matrix-vector product: \n");CHKERRQ(ierr); 98957b952d6SSatish Balay ierr = VecScatterView(baij->Mvctx,viewer);CHKERRQ(ierr); 9903a40ed3dSBarry Smith PetscFunctionReturn(0); 991fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_INFO) { 99277431f27SBarry Smith ierr = PetscViewerASCIIPrintf(viewer," block size is %D\n",bs);CHKERRQ(ierr); 9933a40ed3dSBarry Smith PetscFunctionReturn(0); 99404929863SHong Zhang } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) { 99504929863SHong Zhang PetscFunctionReturn(0); 99657b952d6SSatish Balay } 99757b952d6SSatish Balay } 99857b952d6SSatish Balay 9990f5bd95cSBarry Smith if (isdraw) { 1000b0a32e0cSBarry Smith PetscDraw draw; 100157b952d6SSatish Balay PetscTruth isnull; 1002b0a32e0cSBarry Smith ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr); 1003b0a32e0cSBarry Smith ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); if (isnull) PetscFunctionReturn(0); 100457b952d6SSatish Balay } 100557b952d6SSatish Balay 100657b952d6SSatish Balay if (size == 1) { 10077adad957SLisandro Dalcin ierr = PetscObjectSetName((PetscObject)baij->A,((PetscObject)mat)->name);CHKERRQ(ierr); 100857b952d6SSatish Balay ierr = MatView(baij->A,viewer);CHKERRQ(ierr); 1009d64ed03dSBarry Smith } else { 101057b952d6SSatish Balay /* assemble the entire matrix onto first processor. */ 101157b952d6SSatish Balay Mat A; 101257b952d6SSatish Balay Mat_SeqBAIJ *Aloc; 1013d0f46423SBarry Smith PetscInt M = mat->rmap->N,N = mat->cmap->N,*ai,*aj,col,i,j,k,*rvals,mbs = baij->mbs; 10143eda8832SBarry Smith MatScalar *a; 101557b952d6SSatish Balay 1016f204ca49SKris Buschelman /* Here we are creating a temporary matrix, so will assume MPIBAIJ is acceptable */ 1017f204ca49SKris Buschelman /* Perhaps this should be the type of mat? */ 10187adad957SLisandro Dalcin ierr = MatCreate(((PetscObject)mat)->comm,&A);CHKERRQ(ierr); 101957b952d6SSatish Balay if (!rank) { 1020f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,M,N,M,N);CHKERRQ(ierr); 1021d64ed03dSBarry Smith } else { 1022f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,0,0,M,N);CHKERRQ(ierr); 102357b952d6SSatish Balay } 1024f204ca49SKris Buschelman ierr = MatSetType(A,MATMPIBAIJ);CHKERRQ(ierr); 1025d0f46423SBarry Smith ierr = MatMPIBAIJSetPreallocation(A,mat->rmap->bs,0,PETSC_NULL,0,PETSC_NULL);CHKERRQ(ierr); 102652e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,A);CHKERRQ(ierr); 102757b952d6SSatish Balay 102857b952d6SSatish Balay /* copy over the A part */ 102957b952d6SSatish Balay Aloc = (Mat_SeqBAIJ*)baij->A->data; 103057b952d6SSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 1031b24ad042SBarry Smith ierr = PetscMalloc(bs*sizeof(PetscInt),&rvals);CHKERRQ(ierr); 103257b952d6SSatish Balay 103357b952d6SSatish Balay for (i=0; i<mbs; i++) { 1034899cda47SBarry Smith rvals[0] = bs*(baij->rstartbs + i); 103557b952d6SSatish Balay for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; } 103657b952d6SSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 1037899cda47SBarry Smith col = (baij->cstartbs+aj[j])*bs; 103857b952d6SSatish Balay for (k=0; k<bs; k++) { 103997e5c40aSBarry Smith ierr = MatSetValues_MPIBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 1040cee3aa6bSSatish Balay col++; a += bs; 104157b952d6SSatish Balay } 104257b952d6SSatish Balay } 104357b952d6SSatish Balay } 104457b952d6SSatish Balay /* copy over the B part */ 104557b952d6SSatish Balay Aloc = (Mat_SeqBAIJ*)baij->B->data; 104657b952d6SSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 104757b952d6SSatish Balay for (i=0; i<mbs; i++) { 1048899cda47SBarry Smith rvals[0] = bs*(baij->rstartbs + i); 104957b952d6SSatish Balay for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; } 105057b952d6SSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 105157b952d6SSatish Balay col = baij->garray[aj[j]]*bs; 105257b952d6SSatish Balay for (k=0; k<bs; k++) { 105397e5c40aSBarry Smith ierr = MatSetValues_MPIBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 1054cee3aa6bSSatish Balay col++; a += bs; 105557b952d6SSatish Balay } 105657b952d6SSatish Balay } 105757b952d6SSatish Balay } 1058606d414cSSatish Balay ierr = PetscFree(rvals);CHKERRQ(ierr); 10596d4a8577SBarry Smith ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 10606d4a8577SBarry Smith ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 106155843e3eSBarry Smith /* 106255843e3eSBarry Smith Everyone has to call to draw the matrix since the graphics waits are 1063b0a32e0cSBarry Smith synchronized across all processors that share the PetscDraw object 106455843e3eSBarry Smith */ 1065b0a32e0cSBarry Smith ierr = PetscViewerGetSingleton(viewer,&sviewer);CHKERRQ(ierr); 1066f14a1c24SBarry Smith if (!rank) { 10677adad957SLisandro Dalcin ierr = PetscObjectSetName((PetscObject)((Mat_MPIBAIJ*)(A->data))->A,((PetscObject)mat)->name);CHKERRQ(ierr); 10686831982aSBarry Smith ierr = MatView(((Mat_MPIBAIJ*)(A->data))->A,sviewer);CHKERRQ(ierr); 106957b952d6SSatish Balay } 1070b0a32e0cSBarry Smith ierr = PetscViewerRestoreSingleton(viewer,&sviewer);CHKERRQ(ierr); 107157b952d6SSatish Balay ierr = MatDestroy(A);CHKERRQ(ierr); 107257b952d6SSatish Balay } 10733a40ed3dSBarry Smith PetscFunctionReturn(0); 107457b952d6SSatish Balay } 107557b952d6SSatish Balay 10764a2ae208SSatish Balay #undef __FUNCT__ 10774a2ae208SSatish Balay #define __FUNCT__ "MatView_MPIBAIJ" 1078dfbe8321SBarry Smith PetscErrorCode MatView_MPIBAIJ(Mat mat,PetscViewer viewer) 107957b952d6SSatish Balay { 1080dfbe8321SBarry Smith PetscErrorCode ierr; 108132077d6dSBarry Smith PetscTruth iascii,isdraw,issocket,isbinary; 108257b952d6SSatish Balay 1083d64ed03dSBarry Smith PetscFunctionBegin; 108432077d6dSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&iascii);CHKERRQ(ierr); 1085fb9695e5SSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr); 1086b0a32e0cSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_SOCKET,&issocket);CHKERRQ(ierr); 1087fb9695e5SSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_BINARY,&isbinary);CHKERRQ(ierr); 108832077d6dSBarry Smith if (iascii || isdraw || issocket || isbinary) { 10897b2a1423SBarry Smith ierr = MatView_MPIBAIJ_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr); 10905cd90555SBarry Smith } else { 109179a5c55eSBarry Smith SETERRQ1(PETSC_ERR_SUP,"Viewer type %s not supported by MPIBAIJ matrices",((PetscObject)viewer)->type_name); 109257b952d6SSatish Balay } 10933a40ed3dSBarry Smith PetscFunctionReturn(0); 109457b952d6SSatish Balay } 109557b952d6SSatish Balay 10964a2ae208SSatish Balay #undef __FUNCT__ 10974a2ae208SSatish Balay #define __FUNCT__ "MatDestroy_MPIBAIJ" 1098dfbe8321SBarry Smith PetscErrorCode MatDestroy_MPIBAIJ(Mat mat) 109979bdfe76SSatish Balay { 110079bdfe76SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 1101dfbe8321SBarry Smith PetscErrorCode ierr; 110279bdfe76SSatish Balay 1103d64ed03dSBarry Smith PetscFunctionBegin; 1104aa482453SBarry Smith #if defined(PETSC_USE_LOG) 1105d0f46423SBarry Smith PetscLogObjectState((PetscObject)mat,"Rows=%D,Cols=%D",mat->rmap->N,mat->cmap->N); 110679bdfe76SSatish Balay #endif 11078798bf22SSatish Balay ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr); 11088798bf22SSatish Balay ierr = MatStashDestroy_Private(&mat->bstash);CHKERRQ(ierr); 110979bdfe76SSatish Balay ierr = MatDestroy(baij->A);CHKERRQ(ierr); 111079bdfe76SSatish Balay ierr = MatDestroy(baij->B);CHKERRQ(ierr); 1111aa482453SBarry Smith #if defined (PETSC_USE_CTABLE) 11129c666560SBarry Smith if (baij->colmap) {ierr = PetscTableDestroy(baij->colmap);CHKERRQ(ierr);} 111348e59246SSatish Balay #else 111405b42c5fSBarry Smith ierr = PetscFree(baij->colmap);CHKERRQ(ierr); 111548e59246SSatish Balay #endif 111605b42c5fSBarry Smith ierr = PetscFree(baij->garray);CHKERRQ(ierr); 1117606d414cSSatish Balay if (baij->lvec) {ierr = VecDestroy(baij->lvec);CHKERRQ(ierr);} 1118606d414cSSatish Balay if (baij->Mvctx) {ierr = VecScatterDestroy(baij->Mvctx);CHKERRQ(ierr);} 111905b42c5fSBarry Smith ierr = PetscFree(baij->rowvalues);CHKERRQ(ierr); 112005b42c5fSBarry Smith ierr = PetscFree(baij->barray);CHKERRQ(ierr); 112105b42c5fSBarry Smith ierr = PetscFree(baij->hd);CHKERRQ(ierr); 1122899cda47SBarry Smith ierr = PetscFree(baij->rangebs);CHKERRQ(ierr); 1123606d414cSSatish Balay ierr = PetscFree(baij);CHKERRQ(ierr); 1124901853e0SKris Buschelman 1125dbd8c25aSHong Zhang ierr = PetscObjectChangeTypeName((PetscObject)mat,0);CHKERRQ(ierr); 1126901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatStoreValues_C","",PETSC_NULL);CHKERRQ(ierr); 1127901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatRetrieveValues_C","",PETSC_NULL);CHKERRQ(ierr); 1128901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatGetDiagonalBlock_C","",PETSC_NULL);CHKERRQ(ierr); 1129901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPIBAIJSetPreallocation_C","",PETSC_NULL);CHKERRQ(ierr); 1130aac34f13SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPIBAIJSetPreallocationCSR_C","",PETSC_NULL);CHKERRQ(ierr); 1131901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDiagonalScaleLocal_C","",PETSC_NULL);CHKERRQ(ierr); 1132901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatSetHashTableFactor_C","",PETSC_NULL);CHKERRQ(ierr); 11333a40ed3dSBarry Smith PetscFunctionReturn(0); 113479bdfe76SSatish Balay } 113579bdfe76SSatish Balay 11364a2ae208SSatish Balay #undef __FUNCT__ 11374a2ae208SSatish Balay #define __FUNCT__ "MatMult_MPIBAIJ" 1138dfbe8321SBarry Smith PetscErrorCode MatMult_MPIBAIJ(Mat A,Vec xx,Vec yy) 1139cee3aa6bSSatish Balay { 1140cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1141dfbe8321SBarry Smith PetscErrorCode ierr; 1142b24ad042SBarry Smith PetscInt nt; 1143cee3aa6bSSatish Balay 1144d64ed03dSBarry Smith PetscFunctionBegin; 1145e1311b90SBarry Smith ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr); 1146d0f46423SBarry Smith if (nt != A->cmap->n) { 114729bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx"); 114847b4a8eaSLois Curfman McInnes } 1149e1311b90SBarry Smith ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr); 1150d0f46423SBarry Smith if (nt != A->rmap->n) { 115129bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible parition of A and yy"); 115247b4a8eaSLois Curfman McInnes } 1153ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1154f830108cSBarry Smith ierr = (*a->A->ops->mult)(a->A,xx,yy);CHKERRQ(ierr); 1155ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1156f830108cSBarry Smith ierr = (*a->B->ops->multadd)(a->B,a->lvec,yy,yy);CHKERRQ(ierr); 11573a40ed3dSBarry Smith PetscFunctionReturn(0); 1158cee3aa6bSSatish Balay } 1159cee3aa6bSSatish Balay 11604a2ae208SSatish Balay #undef __FUNCT__ 11614a2ae208SSatish Balay #define __FUNCT__ "MatMultAdd_MPIBAIJ" 1162dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPIBAIJ(Mat A,Vec xx,Vec yy,Vec zz) 1163cee3aa6bSSatish Balay { 1164cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1165dfbe8321SBarry Smith PetscErrorCode ierr; 1166d64ed03dSBarry Smith 1167d64ed03dSBarry Smith PetscFunctionBegin; 1168ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1169f830108cSBarry Smith ierr = (*a->A->ops->multadd)(a->A,xx,yy,zz);CHKERRQ(ierr); 1170ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1171f830108cSBarry Smith ierr = (*a->B->ops->multadd)(a->B,a->lvec,zz,zz);CHKERRQ(ierr); 11723a40ed3dSBarry Smith PetscFunctionReturn(0); 1173cee3aa6bSSatish Balay } 1174cee3aa6bSSatish Balay 11754a2ae208SSatish Balay #undef __FUNCT__ 11764a2ae208SSatish Balay #define __FUNCT__ "MatMultTranspose_MPIBAIJ" 1177dfbe8321SBarry Smith PetscErrorCode MatMultTranspose_MPIBAIJ(Mat A,Vec xx,Vec yy) 1178cee3aa6bSSatish Balay { 1179cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1180dfbe8321SBarry Smith PetscErrorCode ierr; 1181a5ff213dSBarry Smith PetscTruth merged; 1182cee3aa6bSSatish Balay 1183d64ed03dSBarry Smith PetscFunctionBegin; 1184a5ff213dSBarry Smith ierr = VecScatterGetMerged(a->Mvctx,&merged);CHKERRQ(ierr); 1185cee3aa6bSSatish Balay /* do nondiagonal part */ 11867c922b88SBarry Smith ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr); 1187a5ff213dSBarry Smith if (!merged) { 1188cee3aa6bSSatish Balay /* send it on its way */ 1189ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 1190cee3aa6bSSatish Balay /* do local part */ 11917c922b88SBarry Smith ierr = (*a->A->ops->multtranspose)(a->A,xx,yy);CHKERRQ(ierr); 1192cee3aa6bSSatish Balay /* receive remote parts: note this assumes the values are not actually */ 1193a5ff213dSBarry Smith /* inserted in yy until the next line */ 1194ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 1195a5ff213dSBarry Smith } else { 1196a5ff213dSBarry Smith /* do local part */ 1197a5ff213dSBarry Smith ierr = (*a->A->ops->multtranspose)(a->A,xx,yy);CHKERRQ(ierr); 1198a5ff213dSBarry Smith /* send it on its way */ 1199ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 1200a5ff213dSBarry Smith /* values actually were received in the Begin() but we need to call this nop */ 1201ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 1202a5ff213dSBarry Smith } 12033a40ed3dSBarry Smith PetscFunctionReturn(0); 1204cee3aa6bSSatish Balay } 1205cee3aa6bSSatish Balay 12064a2ae208SSatish Balay #undef __FUNCT__ 12074a2ae208SSatish Balay #define __FUNCT__ "MatMultTransposeAdd_MPIBAIJ" 1208dfbe8321SBarry Smith PetscErrorCode MatMultTransposeAdd_MPIBAIJ(Mat A,Vec xx,Vec yy,Vec zz) 1209cee3aa6bSSatish Balay { 1210cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1211dfbe8321SBarry Smith PetscErrorCode ierr; 1212cee3aa6bSSatish Balay 1213d64ed03dSBarry Smith PetscFunctionBegin; 1214cee3aa6bSSatish Balay /* do nondiagonal part */ 12157c922b88SBarry Smith ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr); 1216cee3aa6bSSatish Balay /* send it on its way */ 1217ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 1218cee3aa6bSSatish Balay /* do local part */ 12197c922b88SBarry Smith ierr = (*a->A->ops->multtransposeadd)(a->A,xx,yy,zz);CHKERRQ(ierr); 1220cee3aa6bSSatish Balay /* receive remote parts: note this assumes the values are not actually */ 1221cee3aa6bSSatish Balay /* inserted in yy until the next line, which is true for my implementation*/ 1222cee3aa6bSSatish Balay /* but is not perhaps always true. */ 1223ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 12243a40ed3dSBarry Smith PetscFunctionReturn(0); 1225cee3aa6bSSatish Balay } 1226cee3aa6bSSatish Balay 1227cee3aa6bSSatish Balay /* 1228cee3aa6bSSatish Balay This only works correctly for square matrices where the subblock A->A is the 1229cee3aa6bSSatish Balay diagonal block 1230cee3aa6bSSatish Balay */ 12314a2ae208SSatish Balay #undef __FUNCT__ 12324a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonal_MPIBAIJ" 1233dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_MPIBAIJ(Mat A,Vec v) 1234cee3aa6bSSatish Balay { 1235cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1236dfbe8321SBarry Smith PetscErrorCode ierr; 1237d64ed03dSBarry Smith 1238d64ed03dSBarry Smith PetscFunctionBegin; 1239d0f46423SBarry Smith if (A->rmap->N != A->cmap->N) SETERRQ(PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block"); 12403a40ed3dSBarry Smith ierr = MatGetDiagonal(a->A,v);CHKERRQ(ierr); 12413a40ed3dSBarry Smith PetscFunctionReturn(0); 1242cee3aa6bSSatish Balay } 1243cee3aa6bSSatish Balay 12444a2ae208SSatish Balay #undef __FUNCT__ 12454a2ae208SSatish Balay #define __FUNCT__ "MatScale_MPIBAIJ" 1246f4df32b1SMatthew Knepley PetscErrorCode MatScale_MPIBAIJ(Mat A,PetscScalar aa) 1247cee3aa6bSSatish Balay { 1248cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1249dfbe8321SBarry Smith PetscErrorCode ierr; 1250d64ed03dSBarry Smith 1251d64ed03dSBarry Smith PetscFunctionBegin; 1252f4df32b1SMatthew Knepley ierr = MatScale(a->A,aa);CHKERRQ(ierr); 1253f4df32b1SMatthew Knepley ierr = MatScale(a->B,aa);CHKERRQ(ierr); 12543a40ed3dSBarry Smith PetscFunctionReturn(0); 1255cee3aa6bSSatish Balay } 1256026e39d0SSatish Balay 12574a2ae208SSatish Balay #undef __FUNCT__ 12584a2ae208SSatish Balay #define __FUNCT__ "MatGetRow_MPIBAIJ" 1259b24ad042SBarry Smith PetscErrorCode MatGetRow_MPIBAIJ(Mat matin,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 1260acdf5bf4SSatish Balay { 1261acdf5bf4SSatish Balay Mat_MPIBAIJ *mat = (Mat_MPIBAIJ*)matin->data; 126287828ca2SBarry Smith PetscScalar *vworkA,*vworkB,**pvA,**pvB,*v_p; 12636849ba73SBarry Smith PetscErrorCode ierr; 1264d0f46423SBarry Smith PetscInt bs = matin->rmap->bs,bs2 = mat->bs2,i,*cworkA,*cworkB,**pcA,**pcB; 1265d0f46423SBarry Smith PetscInt nztot,nzA,nzB,lrow,brstart = matin->rmap->rstart,brend = matin->rmap->rend; 1266899cda47SBarry Smith PetscInt *cmap,*idx_p,cstart = mat->cstartbs; 1267acdf5bf4SSatish Balay 1268d64ed03dSBarry Smith PetscFunctionBegin; 1269abc0a331SBarry Smith if (mat->getrowactive) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Already active"); 1270acdf5bf4SSatish Balay mat->getrowactive = PETSC_TRUE; 1271acdf5bf4SSatish Balay 1272acdf5bf4SSatish Balay if (!mat->rowvalues && (idx || v)) { 1273acdf5bf4SSatish Balay /* 1274acdf5bf4SSatish Balay allocate enough space to hold information from the longest row. 1275acdf5bf4SSatish Balay */ 1276acdf5bf4SSatish Balay Mat_SeqBAIJ *Aa = (Mat_SeqBAIJ*)mat->A->data,*Ba = (Mat_SeqBAIJ*)mat->B->data; 1277b24ad042SBarry Smith PetscInt max = 1,mbs = mat->mbs,tmp; 1278bd16c2feSSatish Balay for (i=0; i<mbs; i++) { 1279acdf5bf4SSatish Balay tmp = Aa->i[i+1] - Aa->i[i] + Ba->i[i+1] - Ba->i[i]; 1280acdf5bf4SSatish Balay if (max < tmp) { max = tmp; } 1281acdf5bf4SSatish Balay } 1282b24ad042SBarry Smith ierr = PetscMalloc(max*bs2*(sizeof(PetscInt)+sizeof(PetscScalar)),&mat->rowvalues);CHKERRQ(ierr); 1283b24ad042SBarry Smith mat->rowindices = (PetscInt*)(mat->rowvalues + max*bs2); 1284acdf5bf4SSatish Balay } 1285acdf5bf4SSatish Balay 128629bbc08cSBarry Smith if (row < brstart || row >= brend) SETERRQ(PETSC_ERR_SUP,"Only local rows") 1287d9d09a02SSatish Balay lrow = row - brstart; 1288acdf5bf4SSatish Balay 1289acdf5bf4SSatish Balay pvA = &vworkA; pcA = &cworkA; pvB = &vworkB; pcB = &cworkB; 1290acdf5bf4SSatish Balay if (!v) {pvA = 0; pvB = 0;} 1291acdf5bf4SSatish Balay if (!idx) {pcA = 0; if (!v) pcB = 0;} 1292f830108cSBarry Smith ierr = (*mat->A->ops->getrow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr); 1293f830108cSBarry Smith ierr = (*mat->B->ops->getrow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr); 1294acdf5bf4SSatish Balay nztot = nzA + nzB; 1295acdf5bf4SSatish Balay 1296acdf5bf4SSatish Balay cmap = mat->garray; 1297acdf5bf4SSatish Balay if (v || idx) { 1298acdf5bf4SSatish Balay if (nztot) { 1299acdf5bf4SSatish Balay /* Sort by increasing column numbers, assuming A and B already sorted */ 1300b24ad042SBarry Smith PetscInt imark = -1; 1301acdf5bf4SSatish Balay if (v) { 1302acdf5bf4SSatish Balay *v = v_p = mat->rowvalues; 1303acdf5bf4SSatish Balay for (i=0; i<nzB; i++) { 1304d9d09a02SSatish Balay if (cmap[cworkB[i]/bs] < cstart) v_p[i] = vworkB[i]; 1305acdf5bf4SSatish Balay else break; 1306acdf5bf4SSatish Balay } 1307acdf5bf4SSatish Balay imark = i; 1308acdf5bf4SSatish Balay for (i=0; i<nzA; i++) v_p[imark+i] = vworkA[i]; 1309acdf5bf4SSatish Balay for (i=imark; i<nzB; i++) v_p[nzA+i] = vworkB[i]; 1310acdf5bf4SSatish Balay } 1311acdf5bf4SSatish Balay if (idx) { 1312acdf5bf4SSatish Balay *idx = idx_p = mat->rowindices; 1313acdf5bf4SSatish Balay if (imark > -1) { 1314acdf5bf4SSatish Balay for (i=0; i<imark; i++) { 1315bd16c2feSSatish Balay idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs; 1316acdf5bf4SSatish Balay } 1317acdf5bf4SSatish Balay } else { 1318acdf5bf4SSatish Balay for (i=0; i<nzB; i++) { 1319d9d09a02SSatish Balay if (cmap[cworkB[i]/bs] < cstart) 1320d9d09a02SSatish Balay idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ; 1321acdf5bf4SSatish Balay else break; 1322acdf5bf4SSatish Balay } 1323acdf5bf4SSatish Balay imark = i; 1324acdf5bf4SSatish Balay } 1325d9d09a02SSatish Balay for (i=0; i<nzA; i++) idx_p[imark+i] = cstart*bs + cworkA[i]; 1326d9d09a02SSatish Balay for (i=imark; i<nzB; i++) idx_p[nzA+i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ; 1327acdf5bf4SSatish Balay } 1328d64ed03dSBarry Smith } else { 1329d212a18eSSatish Balay if (idx) *idx = 0; 1330d212a18eSSatish Balay if (v) *v = 0; 1331d212a18eSSatish Balay } 1332acdf5bf4SSatish Balay } 1333acdf5bf4SSatish Balay *nz = nztot; 1334f830108cSBarry Smith ierr = (*mat->A->ops->restorerow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr); 1335f830108cSBarry Smith ierr = (*mat->B->ops->restorerow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr); 13363a40ed3dSBarry Smith PetscFunctionReturn(0); 1337acdf5bf4SSatish Balay } 1338acdf5bf4SSatish Balay 13394a2ae208SSatish Balay #undef __FUNCT__ 13404a2ae208SSatish Balay #define __FUNCT__ "MatRestoreRow_MPIBAIJ" 1341b24ad042SBarry Smith PetscErrorCode MatRestoreRow_MPIBAIJ(Mat mat,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 1342acdf5bf4SSatish Balay { 1343acdf5bf4SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 1344d64ed03dSBarry Smith 1345d64ed03dSBarry Smith PetscFunctionBegin; 1346abc0a331SBarry Smith if (!baij->getrowactive) { 134729bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"MatGetRow not called"); 1348acdf5bf4SSatish Balay } 1349acdf5bf4SSatish Balay baij->getrowactive = PETSC_FALSE; 13503a40ed3dSBarry Smith PetscFunctionReturn(0); 1351acdf5bf4SSatish Balay } 1352acdf5bf4SSatish Balay 13534a2ae208SSatish Balay #undef __FUNCT__ 13544a2ae208SSatish Balay #define __FUNCT__ "MatZeroEntries_MPIBAIJ" 1355dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_MPIBAIJ(Mat A) 135658667388SSatish Balay { 135758667388SSatish Balay Mat_MPIBAIJ *l = (Mat_MPIBAIJ*)A->data; 1358dfbe8321SBarry Smith PetscErrorCode ierr; 1359d64ed03dSBarry Smith 1360d64ed03dSBarry Smith PetscFunctionBegin; 136158667388SSatish Balay ierr = MatZeroEntries(l->A);CHKERRQ(ierr); 136258667388SSatish Balay ierr = MatZeroEntries(l->B);CHKERRQ(ierr); 13633a40ed3dSBarry Smith PetscFunctionReturn(0); 136458667388SSatish Balay } 13650ac07820SSatish Balay 13664a2ae208SSatish Balay #undef __FUNCT__ 13674a2ae208SSatish Balay #define __FUNCT__ "MatGetInfo_MPIBAIJ" 1368dfbe8321SBarry Smith PetscErrorCode MatGetInfo_MPIBAIJ(Mat matin,MatInfoType flag,MatInfo *info) 13690ac07820SSatish Balay { 13704e220ebcSLois Curfman McInnes Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)matin->data; 13714e220ebcSLois Curfman McInnes Mat A = a->A,B = a->B; 1372dfbe8321SBarry Smith PetscErrorCode ierr; 1373329f5518SBarry Smith PetscReal isend[5],irecv[5]; 13740ac07820SSatish Balay 1375d64ed03dSBarry Smith PetscFunctionBegin; 1376d0f46423SBarry Smith info->block_size = (PetscReal)matin->rmap->bs; 13774e220ebcSLois Curfman McInnes ierr = MatGetInfo(A,MAT_LOCAL,info);CHKERRQ(ierr); 13780e4b21beSBarry Smith isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded; 1379de87f314SBarry Smith isend[3] = info->memory; isend[4] = info->mallocs; 13804e220ebcSLois Curfman McInnes ierr = MatGetInfo(B,MAT_LOCAL,info);CHKERRQ(ierr); 13810e4b21beSBarry Smith isend[0] += info->nz_used; isend[1] += info->nz_allocated; isend[2] += info->nz_unneeded; 1382de87f314SBarry Smith isend[3] += info->memory; isend[4] += info->mallocs; 13830ac07820SSatish Balay if (flag == MAT_LOCAL) { 13844e220ebcSLois Curfman McInnes info->nz_used = isend[0]; 13854e220ebcSLois Curfman McInnes info->nz_allocated = isend[1]; 13864e220ebcSLois Curfman McInnes info->nz_unneeded = isend[2]; 13874e220ebcSLois Curfman McInnes info->memory = isend[3]; 13884e220ebcSLois Curfman McInnes info->mallocs = isend[4]; 13890ac07820SSatish Balay } else if (flag == MAT_GLOBAL_MAX) { 13907adad957SLisandro Dalcin ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_MAX,((PetscObject)matin)->comm);CHKERRQ(ierr); 13914e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 13924e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 13934e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 13944e220ebcSLois Curfman McInnes info->memory = irecv[3]; 13954e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 13960ac07820SSatish Balay } else if (flag == MAT_GLOBAL_SUM) { 13977adad957SLisandro Dalcin ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_SUM,((PetscObject)matin)->comm);CHKERRQ(ierr); 13984e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 13994e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 14004e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 14014e220ebcSLois Curfman McInnes info->memory = irecv[3]; 14024e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 1403d41123aaSBarry Smith } else { 140477431f27SBarry Smith SETERRQ1(PETSC_ERR_ARG_WRONG,"Unknown MatInfoType argument %d",(int)flag); 14050ac07820SSatish Balay } 14064e220ebcSLois Curfman McInnes info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */ 14074e220ebcSLois Curfman McInnes info->fill_ratio_needed = 0; 14084e220ebcSLois Curfman McInnes info->factor_mallocs = 0; 14093a40ed3dSBarry Smith PetscFunctionReturn(0); 14100ac07820SSatish Balay } 14110ac07820SSatish Balay 14124a2ae208SSatish Balay #undef __FUNCT__ 14134a2ae208SSatish Balay #define __FUNCT__ "MatSetOption_MPIBAIJ" 14144e0d8c25SBarry Smith PetscErrorCode MatSetOption_MPIBAIJ(Mat A,MatOption op,PetscTruth flg) 141558667388SSatish Balay { 141658667388SSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1417dfbe8321SBarry Smith PetscErrorCode ierr; 141858667388SSatish Balay 1419d64ed03dSBarry Smith PetscFunctionBegin; 142012c028f9SKris Buschelman switch (op) { 1421512a5fc5SBarry Smith case MAT_NEW_NONZERO_LOCATIONS: 142212c028f9SKris Buschelman case MAT_NEW_NONZERO_ALLOCATION_ERR: 142328b2fa4aSMatthew Knepley case MAT_UNUSED_NONZERO_LOCATION_ERR: 142412c028f9SKris Buschelman case MAT_KEEP_ZEROED_ROWS: 142512c028f9SKris Buschelman case MAT_NEW_NONZERO_LOCATION_ERR: 14264e0d8c25SBarry Smith ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 14274e0d8c25SBarry Smith ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr); 142812c028f9SKris Buschelman break; 142912c028f9SKris Buschelman case MAT_ROW_ORIENTED: 14304e0d8c25SBarry Smith a->roworiented = flg; 14314e0d8c25SBarry Smith ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 14324e0d8c25SBarry Smith ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr); 143312c028f9SKris Buschelman break; 14344e0d8c25SBarry Smith case MAT_NEW_DIAGONALS: 1435290bbb0aSBarry Smith ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr); 143612c028f9SKris Buschelman break; 143712c028f9SKris Buschelman case MAT_IGNORE_OFF_PROC_ENTRIES: 14384e0d8c25SBarry Smith a->donotstash = flg; 143912c028f9SKris Buschelman break; 144012c028f9SKris Buschelman case MAT_USE_HASH_TABLE: 14414e0d8c25SBarry Smith a->ht_flag = flg; 144212c028f9SKris Buschelman break; 144377e54ba9SKris Buschelman case MAT_SYMMETRIC: 144477e54ba9SKris Buschelman case MAT_STRUCTURALLY_SYMMETRIC: 14452188ac68SBarry Smith case MAT_HERMITIAN: 14462188ac68SBarry Smith case MAT_SYMMETRY_ETERNAL: 14474e0d8c25SBarry Smith ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 144877e54ba9SKris Buschelman break; 144912c028f9SKris Buschelman default: 1450ad86a440SBarry Smith SETERRQ1(PETSC_ERR_SUP,"unknown option %d",op); 1451d64ed03dSBarry Smith } 14523a40ed3dSBarry Smith PetscFunctionReturn(0); 145358667388SSatish Balay } 145458667388SSatish Balay 14554a2ae208SSatish Balay #undef __FUNCT__ 14564a2ae208SSatish Balay #define __FUNCT__ "MatTranspose_MPIBAIJ(" 1457fc4dec0aSBarry Smith PetscErrorCode MatTranspose_MPIBAIJ(Mat A,MatReuse reuse,Mat *matout) 14580ac07820SSatish Balay { 14590ac07820SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)A->data; 14600ac07820SSatish Balay Mat_SeqBAIJ *Aloc; 14610ac07820SSatish Balay Mat B; 1462dfbe8321SBarry Smith PetscErrorCode ierr; 1463d0f46423SBarry Smith PetscInt M=A->rmap->N,N=A->cmap->N,*ai,*aj,i,*rvals,j,k,col; 1464d0f46423SBarry Smith PetscInt bs=A->rmap->bs,mbs=baij->mbs; 14653eda8832SBarry Smith MatScalar *a; 14660ac07820SSatish Balay 1467d64ed03dSBarry Smith PetscFunctionBegin; 1468e9695a30SBarry Smith if (reuse == MAT_REUSE_MATRIX && A == *matout && M != N) SETERRQ(PETSC_ERR_ARG_SIZ,"Square matrix only for in-place"); 1469fc4dec0aSBarry Smith if (reuse == MAT_INITIAL_MATRIX || *matout == A) { 14707adad957SLisandro Dalcin ierr = MatCreate(((PetscObject)A)->comm,&B);CHKERRQ(ierr); 1471d0f46423SBarry Smith ierr = MatSetSizes(B,A->cmap->n,A->rmap->n,N,M);CHKERRQ(ierr); 14727adad957SLisandro Dalcin ierr = MatSetType(B,((PetscObject)A)->type_name);CHKERRQ(ierr); 1473d0f46423SBarry Smith ierr = MatMPIBAIJSetPreallocation(B,A->rmap->bs,0,PETSC_NULL,0,PETSC_NULL);CHKERRQ(ierr); 1474fc4dec0aSBarry Smith } else { 1475fc4dec0aSBarry Smith B = *matout; 1476fc4dec0aSBarry Smith } 14770ac07820SSatish Balay 14780ac07820SSatish Balay /* copy over the A part */ 14790ac07820SSatish Balay Aloc = (Mat_SeqBAIJ*)baij->A->data; 14800ac07820SSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 1481b24ad042SBarry Smith ierr = PetscMalloc(bs*sizeof(PetscInt),&rvals);CHKERRQ(ierr); 14820ac07820SSatish Balay 14830ac07820SSatish Balay for (i=0; i<mbs; i++) { 1484899cda47SBarry Smith rvals[0] = bs*(baij->rstartbs + i); 14850ac07820SSatish Balay for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; } 14860ac07820SSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 1487899cda47SBarry Smith col = (baij->cstartbs+aj[j])*bs; 14880ac07820SSatish Balay for (k=0; k<bs; k++) { 148997e5c40aSBarry Smith ierr = MatSetValues_MPIBAIJ(B,1,&col,bs,rvals,a,INSERT_VALUES);CHKERRQ(ierr); 14900ac07820SSatish Balay col++; a += bs; 14910ac07820SSatish Balay } 14920ac07820SSatish Balay } 14930ac07820SSatish Balay } 14940ac07820SSatish Balay /* copy over the B part */ 14950ac07820SSatish Balay Aloc = (Mat_SeqBAIJ*)baij->B->data; 14960ac07820SSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 14970ac07820SSatish Balay for (i=0; i<mbs; i++) { 1498899cda47SBarry Smith rvals[0] = bs*(baij->rstartbs + i); 14990ac07820SSatish Balay for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; } 15000ac07820SSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 15010ac07820SSatish Balay col = baij->garray[aj[j]]*bs; 15020ac07820SSatish Balay for (k=0; k<bs; k++) { 150397e5c40aSBarry Smith ierr = MatSetValues_MPIBAIJ(B,1,&col,bs,rvals,a,INSERT_VALUES);CHKERRQ(ierr); 15040ac07820SSatish Balay col++; a += bs; 15050ac07820SSatish Balay } 15060ac07820SSatish Balay } 15070ac07820SSatish Balay } 1508606d414cSSatish Balay ierr = PetscFree(rvals);CHKERRQ(ierr); 15090ac07820SSatish Balay ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 15100ac07820SSatish Balay ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 15110ac07820SSatish Balay 1512815cbec1SBarry Smith if (reuse == MAT_INITIAL_MATRIX || *matout != A) { 15130ac07820SSatish Balay *matout = B; 15140ac07820SSatish Balay } else { 1515273d9f13SBarry Smith ierr = MatHeaderCopy(A,B);CHKERRQ(ierr); 15160ac07820SSatish Balay } 15173a40ed3dSBarry Smith PetscFunctionReturn(0); 15180ac07820SSatish Balay } 15190e95ebc0SSatish Balay 15204a2ae208SSatish Balay #undef __FUNCT__ 15214a2ae208SSatish Balay #define __FUNCT__ "MatDiagonalScale_MPIBAIJ" 1522dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_MPIBAIJ(Mat mat,Vec ll,Vec rr) 15230e95ebc0SSatish Balay { 152436c4a09eSSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 152536c4a09eSSatish Balay Mat a = baij->A,b = baij->B; 1526dfbe8321SBarry Smith PetscErrorCode ierr; 1527b24ad042SBarry Smith PetscInt s1,s2,s3; 15280e95ebc0SSatish Balay 1529d64ed03dSBarry Smith PetscFunctionBegin; 153036c4a09eSSatish Balay ierr = MatGetLocalSize(mat,&s2,&s3);CHKERRQ(ierr); 153136c4a09eSSatish Balay if (rr) { 153236c4a09eSSatish Balay ierr = VecGetLocalSize(rr,&s1);CHKERRQ(ierr); 153329bbc08cSBarry Smith if (s1!=s3) SETERRQ(PETSC_ERR_ARG_SIZ,"right vector non-conforming local size"); 153436c4a09eSSatish Balay /* Overlap communication with computation. */ 1535ca9f406cSSatish Balay ierr = VecScatterBegin(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 153636c4a09eSSatish Balay } 15370e95ebc0SSatish Balay if (ll) { 15380e95ebc0SSatish Balay ierr = VecGetLocalSize(ll,&s1);CHKERRQ(ierr); 153929bbc08cSBarry Smith if (s1!=s2) SETERRQ(PETSC_ERR_ARG_SIZ,"left vector non-conforming local size"); 1540a21fb8cbSBarry Smith ierr = (*b->ops->diagonalscale)(b,ll,PETSC_NULL);CHKERRQ(ierr); 15410e95ebc0SSatish Balay } 154236c4a09eSSatish Balay /* scale the diagonal block */ 154336c4a09eSSatish Balay ierr = (*a->ops->diagonalscale)(a,ll,rr);CHKERRQ(ierr); 154436c4a09eSSatish Balay 154536c4a09eSSatish Balay if (rr) { 154636c4a09eSSatish Balay /* Do a scatter end and then right scale the off-diagonal block */ 1547ca9f406cSSatish Balay ierr = VecScatterEnd(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1548a21fb8cbSBarry Smith ierr = (*b->ops->diagonalscale)(b,PETSC_NULL,baij->lvec);CHKERRQ(ierr); 154936c4a09eSSatish Balay } 155036c4a09eSSatish Balay 15513a40ed3dSBarry Smith PetscFunctionReturn(0); 15520e95ebc0SSatish Balay } 15530e95ebc0SSatish Balay 15544a2ae208SSatish Balay #undef __FUNCT__ 15554a2ae208SSatish Balay #define __FUNCT__ "MatZeroRows_MPIBAIJ" 1556f4df32b1SMatthew Knepley PetscErrorCode MatZeroRows_MPIBAIJ(Mat A,PetscInt N,const PetscInt rows[],PetscScalar diag) 15570ac07820SSatish Balay { 15580ac07820SSatish Balay Mat_MPIBAIJ *l = (Mat_MPIBAIJ*)A->data; 15596849ba73SBarry Smith PetscErrorCode ierr; 1560b24ad042SBarry Smith PetscMPIInt imdex,size = l->size,n,rank = l->rank; 1561d0f46423SBarry Smith PetscInt i,*owners = A->rmap->range; 1562b24ad042SBarry Smith PetscInt *nprocs,j,idx,nsends,row; 1563b24ad042SBarry Smith PetscInt nmax,*svalues,*starts,*owner,nrecvs; 15647adad957SLisandro Dalcin PetscInt *rvalues,tag = ((PetscObject)A)->tag,count,base,slen,*source,lastidx = -1; 1565d0f46423SBarry Smith PetscInt *lens,*lrows,*values,rstart_bs=A->rmap->rstart; 15667adad957SLisandro Dalcin MPI_Comm comm = ((PetscObject)A)->comm; 15670ac07820SSatish Balay MPI_Request *send_waits,*recv_waits; 15680ac07820SSatish Balay MPI_Status recv_status,*send_status; 15696543fbbaSBarry Smith #if defined(PETSC_DEBUG) 15706543fbbaSBarry Smith PetscTruth found = PETSC_FALSE; 15716543fbbaSBarry Smith #endif 15720ac07820SSatish Balay 1573d64ed03dSBarry Smith PetscFunctionBegin; 15740ac07820SSatish Balay /* first count number of contributors to each processor */ 1575b24ad042SBarry Smith ierr = PetscMalloc(2*size*sizeof(PetscInt),&nprocs);CHKERRQ(ierr); 1576b24ad042SBarry Smith ierr = PetscMemzero(nprocs,2*size*sizeof(PetscInt));CHKERRQ(ierr); 1577b24ad042SBarry Smith ierr = PetscMalloc((N+1)*sizeof(PetscInt),&owner);CHKERRQ(ierr); /* see note*/ 15786543fbbaSBarry Smith j = 0; 15790ac07820SSatish Balay for (i=0; i<N; i++) { 15806543fbbaSBarry Smith if (lastidx > (idx = rows[i])) j = 0; 15816543fbbaSBarry Smith lastidx = idx; 15826543fbbaSBarry Smith for (; j<size; j++) { 1583357c27ecSBarry Smith if (idx >= owners[j] && idx < owners[j+1]) { 15846543fbbaSBarry Smith nprocs[2*j]++; 15856543fbbaSBarry Smith nprocs[2*j+1] = 1; 15866543fbbaSBarry Smith owner[i] = j; 15876543fbbaSBarry Smith #if defined(PETSC_DEBUG) 15886543fbbaSBarry Smith found = PETSC_TRUE; 15896543fbbaSBarry Smith #endif 15906543fbbaSBarry Smith break; 15910ac07820SSatish Balay } 15920ac07820SSatish Balay } 15936543fbbaSBarry Smith #if defined(PETSC_DEBUG) 159429bbc08cSBarry Smith if (!found) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Index out of range"); 15956543fbbaSBarry Smith found = PETSC_FALSE; 15966543fbbaSBarry Smith #endif 15970ac07820SSatish Balay } 1598c1dc657dSBarry Smith nsends = 0; for (i=0; i<size; i++) { nsends += nprocs[2*i+1];} 15990ac07820SSatish Balay 16000ac07820SSatish Balay /* inform other processors of number of messages and max length*/ 1601c1dc657dSBarry Smith ierr = PetscMaxSum(comm,nprocs,&nmax,&nrecvs);CHKERRQ(ierr); 16020ac07820SSatish Balay 16030ac07820SSatish Balay /* post receives: */ 1604b24ad042SBarry Smith ierr = PetscMalloc((nrecvs+1)*(nmax+1)*sizeof(PetscInt),&rvalues);CHKERRQ(ierr); 1605b0a32e0cSBarry Smith ierr = PetscMalloc((nrecvs+1)*sizeof(MPI_Request),&recv_waits);CHKERRQ(ierr); 16060ac07820SSatish Balay for (i=0; i<nrecvs; i++) { 1607b24ad042SBarry Smith ierr = MPI_Irecv(rvalues+nmax*i,nmax,MPIU_INT,MPI_ANY_SOURCE,tag,comm,recv_waits+i);CHKERRQ(ierr); 16080ac07820SSatish Balay } 16090ac07820SSatish Balay 16100ac07820SSatish Balay /* do sends: 16110ac07820SSatish Balay 1) starts[i] gives the starting index in svalues for stuff going to 16120ac07820SSatish Balay the ith processor 16130ac07820SSatish Balay */ 1614b24ad042SBarry Smith ierr = PetscMalloc((N+1)*sizeof(PetscInt),&svalues);CHKERRQ(ierr); 1615b0a32e0cSBarry Smith ierr = PetscMalloc((nsends+1)*sizeof(MPI_Request),&send_waits);CHKERRQ(ierr); 1616b24ad042SBarry Smith ierr = PetscMalloc((size+1)*sizeof(PetscInt),&starts);CHKERRQ(ierr); 16170ac07820SSatish Balay starts[0] = 0; 1618c1dc657dSBarry Smith for (i=1; i<size; i++) { starts[i] = starts[i-1] + nprocs[2*i-2];} 16190ac07820SSatish Balay for (i=0; i<N; i++) { 16200ac07820SSatish Balay svalues[starts[owner[i]]++] = rows[i]; 16210ac07820SSatish Balay } 16220ac07820SSatish Balay 16230ac07820SSatish Balay starts[0] = 0; 1624c1dc657dSBarry Smith for (i=1; i<size+1; i++) { starts[i] = starts[i-1] + nprocs[2*i-2];} 16250ac07820SSatish Balay count = 0; 16260ac07820SSatish Balay for (i=0; i<size; i++) { 1627c1dc657dSBarry Smith if (nprocs[2*i+1]) { 1628b24ad042SBarry Smith ierr = MPI_Isend(svalues+starts[i],nprocs[2*i],MPIU_INT,i,tag,comm,send_waits+count++);CHKERRQ(ierr); 16290ac07820SSatish Balay } 16300ac07820SSatish Balay } 1631606d414cSSatish Balay ierr = PetscFree(starts);CHKERRQ(ierr); 16320ac07820SSatish Balay 1633357c27ecSBarry Smith base = owners[rank]; 16340ac07820SSatish Balay 16350ac07820SSatish Balay /* wait on receives */ 1636b24ad042SBarry Smith ierr = PetscMalloc(2*(nrecvs+1)*sizeof(PetscInt),&lens);CHKERRQ(ierr); 16370ac07820SSatish Balay source = lens + nrecvs; 16380ac07820SSatish Balay count = nrecvs; slen = 0; 16390ac07820SSatish Balay while (count) { 1640ca161407SBarry Smith ierr = MPI_Waitany(nrecvs,recv_waits,&imdex,&recv_status);CHKERRQ(ierr); 16410ac07820SSatish Balay /* unpack receives into our local space */ 1642b24ad042SBarry Smith ierr = MPI_Get_count(&recv_status,MPIU_INT,&n);CHKERRQ(ierr); 16430ac07820SSatish Balay source[imdex] = recv_status.MPI_SOURCE; 16440ac07820SSatish Balay lens[imdex] = n; 16450ac07820SSatish Balay slen += n; 16460ac07820SSatish Balay count--; 16470ac07820SSatish Balay } 1648606d414cSSatish Balay ierr = PetscFree(recv_waits);CHKERRQ(ierr); 16490ac07820SSatish Balay 16500ac07820SSatish Balay /* move the data into the send scatter */ 1651b24ad042SBarry Smith ierr = PetscMalloc((slen+1)*sizeof(PetscInt),&lrows);CHKERRQ(ierr); 16520ac07820SSatish Balay count = 0; 16530ac07820SSatish Balay for (i=0; i<nrecvs; i++) { 16540ac07820SSatish Balay values = rvalues + i*nmax; 16550ac07820SSatish Balay for (j=0; j<lens[i]; j++) { 16560ac07820SSatish Balay lrows[count++] = values[j] - base; 16570ac07820SSatish Balay } 16580ac07820SSatish Balay } 1659606d414cSSatish Balay ierr = PetscFree(rvalues);CHKERRQ(ierr); 1660606d414cSSatish Balay ierr = PetscFree(lens);CHKERRQ(ierr); 1661606d414cSSatish Balay ierr = PetscFree(owner);CHKERRQ(ierr); 1662606d414cSSatish Balay ierr = PetscFree(nprocs);CHKERRQ(ierr); 16630ac07820SSatish Balay 16640ac07820SSatish Balay /* actually zap the local rows */ 166572dacd9aSBarry Smith /* 166672dacd9aSBarry Smith Zero the required rows. If the "diagonal block" of the matrix 1667a8c7a070SBarry Smith is square and the user wishes to set the diagonal we use separate 166872dacd9aSBarry Smith code so that MatSetValues() is not called for each diagonal allocating 166972dacd9aSBarry Smith new memory, thus calling lots of mallocs and slowing things down. 167072dacd9aSBarry Smith 1671f4df32b1SMatthew Knepley Contributed by: Matthew Knepley 167272dacd9aSBarry Smith */ 16739c957beeSSatish Balay /* must zero l->B before l->A because the (diag) case below may put values into l->B*/ 1674f4df32b1SMatthew Knepley ierr = MatZeroRows_SeqBAIJ(l->B,slen,lrows,0.0);CHKERRQ(ierr); 1675d0f46423SBarry Smith if ((diag != 0.0) && (l->A->rmap->N == l->A->cmap->N)) { 1676f4df32b1SMatthew Knepley ierr = MatZeroRows_SeqBAIJ(l->A,slen,lrows,diag);CHKERRQ(ierr); 1677f4df32b1SMatthew Knepley } else if (diag != 0.0) { 1678f4df32b1SMatthew Knepley ierr = MatZeroRows_SeqBAIJ(l->A,slen,lrows,0.0);CHKERRQ(ierr); 1679fa46199cSSatish Balay if (((Mat_SeqBAIJ*)l->A->data)->nonew) { 168029bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"MatZeroRows() on rectangular matrices cannot be used with the Mat options \n\ 1681512a5fc5SBarry Smith MAT_NEW_NONZERO_LOCATIONS,MAT_NEW_NONZERO_LOCATION_ERR,MAT_NEW_NONZERO_ALLOCATION_ERR"); 16826525c446SSatish Balay } 1683a07cd24cSSatish Balay for (i=0; i<slen; i++) { 1684a07cd24cSSatish Balay row = lrows[i] + rstart_bs; 1685f4df32b1SMatthew Knepley ierr = MatSetValues(A,1,&row,1,&row,&diag,INSERT_VALUES);CHKERRQ(ierr); 1686a07cd24cSSatish Balay } 1687a07cd24cSSatish Balay ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 1688a07cd24cSSatish Balay ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 16899c957beeSSatish Balay } else { 1690f4df32b1SMatthew Knepley ierr = MatZeroRows_SeqBAIJ(l->A,slen,lrows,0.0);CHKERRQ(ierr); 1691a07cd24cSSatish Balay } 16929c957beeSSatish Balay 1693606d414cSSatish Balay ierr = PetscFree(lrows);CHKERRQ(ierr); 1694a07cd24cSSatish Balay 16950ac07820SSatish Balay /* wait on sends */ 16960ac07820SSatish Balay if (nsends) { 169782502324SSatish Balay ierr = PetscMalloc(nsends*sizeof(MPI_Status),&send_status);CHKERRQ(ierr); 1698ca161407SBarry Smith ierr = MPI_Waitall(nsends,send_waits,send_status);CHKERRQ(ierr); 1699606d414cSSatish Balay ierr = PetscFree(send_status);CHKERRQ(ierr); 17000ac07820SSatish Balay } 1701606d414cSSatish Balay ierr = PetscFree(send_waits);CHKERRQ(ierr); 1702606d414cSSatish Balay ierr = PetscFree(svalues);CHKERRQ(ierr); 17030ac07820SSatish Balay 17043a40ed3dSBarry Smith PetscFunctionReturn(0); 17050ac07820SSatish Balay } 170672dacd9aSBarry Smith 17074a2ae208SSatish Balay #undef __FUNCT__ 17084a2ae208SSatish Balay #define __FUNCT__ "MatSetUnfactored_MPIBAIJ" 1709dfbe8321SBarry Smith PetscErrorCode MatSetUnfactored_MPIBAIJ(Mat A) 1710bb5a7306SBarry Smith { 1711bb5a7306SBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1712dfbe8321SBarry Smith PetscErrorCode ierr; 1713d64ed03dSBarry Smith 1714d64ed03dSBarry Smith PetscFunctionBegin; 1715bb5a7306SBarry Smith ierr = MatSetUnfactored(a->A);CHKERRQ(ierr); 17163a40ed3dSBarry Smith PetscFunctionReturn(0); 1717bb5a7306SBarry Smith } 1718bb5a7306SBarry Smith 17196849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIBAIJ(Mat,MatDuplicateOption,Mat *); 17200ac07820SSatish Balay 17214a2ae208SSatish Balay #undef __FUNCT__ 17224a2ae208SSatish Balay #define __FUNCT__ "MatEqual_MPIBAIJ" 1723dfbe8321SBarry Smith PetscErrorCode MatEqual_MPIBAIJ(Mat A,Mat B,PetscTruth *flag) 17247fc3c18eSBarry Smith { 17257fc3c18eSBarry Smith Mat_MPIBAIJ *matB = (Mat_MPIBAIJ*)B->data,*matA = (Mat_MPIBAIJ*)A->data; 17267fc3c18eSBarry Smith Mat a,b,c,d; 17277fc3c18eSBarry Smith PetscTruth flg; 1728dfbe8321SBarry Smith PetscErrorCode ierr; 17297fc3c18eSBarry Smith 17307fc3c18eSBarry Smith PetscFunctionBegin; 17317fc3c18eSBarry Smith a = matA->A; b = matA->B; 17327fc3c18eSBarry Smith c = matB->A; d = matB->B; 17337fc3c18eSBarry Smith 17347fc3c18eSBarry Smith ierr = MatEqual(a,c,&flg);CHKERRQ(ierr); 1735abc0a331SBarry Smith if (flg) { 17367fc3c18eSBarry Smith ierr = MatEqual(b,d,&flg);CHKERRQ(ierr); 17377fc3c18eSBarry Smith } 17387adad957SLisandro Dalcin ierr = MPI_Allreduce(&flg,flag,1,MPI_INT,MPI_LAND,((PetscObject)A)->comm);CHKERRQ(ierr); 17397fc3c18eSBarry Smith PetscFunctionReturn(0); 17407fc3c18eSBarry Smith } 17417fc3c18eSBarry Smith 17423c896bc6SHong Zhang #undef __FUNCT__ 17433c896bc6SHong Zhang #define __FUNCT__ "MatCopy_MPIBAIJ" 17443c896bc6SHong Zhang PetscErrorCode MatCopy_MPIBAIJ(Mat A,Mat B,MatStructure str) 17453c896bc6SHong Zhang { 17463c896bc6SHong Zhang PetscErrorCode ierr; 17473c896bc6SHong Zhang Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 17483c896bc6SHong Zhang Mat_MPIBAIJ *b = (Mat_MPIBAIJ *)B->data; 17493c896bc6SHong Zhang 17503c896bc6SHong Zhang PetscFunctionBegin; 17513c896bc6SHong Zhang /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */ 17523c896bc6SHong Zhang if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) { 17533c896bc6SHong Zhang ierr = MatCopy_Basic(A,B,str);CHKERRQ(ierr); 17543c896bc6SHong Zhang } else { 17553c896bc6SHong Zhang ierr = MatCopy(a->A,b->A,str);CHKERRQ(ierr); 17563c896bc6SHong Zhang ierr = MatCopy(a->B,b->B,str);CHKERRQ(ierr); 17573c896bc6SHong Zhang } 17583c896bc6SHong Zhang PetscFunctionReturn(0); 17593c896bc6SHong Zhang } 1760273d9f13SBarry Smith 17614a2ae208SSatish Balay #undef __FUNCT__ 17624a2ae208SSatish Balay #define __FUNCT__ "MatSetUpPreallocation_MPIBAIJ" 1763dfbe8321SBarry Smith PetscErrorCode MatSetUpPreallocation_MPIBAIJ(Mat A) 1764273d9f13SBarry Smith { 1765dfbe8321SBarry Smith PetscErrorCode ierr; 1766273d9f13SBarry Smith 1767273d9f13SBarry Smith PetscFunctionBegin; 1768db4efbfdSBarry Smith ierr = MatMPIBAIJSetPreallocation(A,-PetscMax(A->rmap->bs,1),PETSC_DEFAULT,0,PETSC_DEFAULT,0);CHKERRQ(ierr); 1769273d9f13SBarry Smith PetscFunctionReturn(0); 1770273d9f13SBarry Smith } 1771273d9f13SBarry Smith 17724fe895cdSHong Zhang #include "petscblaslapack.h" 17734fe895cdSHong Zhang #undef __FUNCT__ 17744fe895cdSHong Zhang #define __FUNCT__ "MatAXPY_MPIBAIJ" 17754fe895cdSHong Zhang PetscErrorCode MatAXPY_MPIBAIJ(Mat Y,PetscScalar a,Mat X,MatStructure str) 17764fe895cdSHong Zhang { 17774fe895cdSHong Zhang PetscErrorCode ierr; 17784fe895cdSHong Zhang Mat_MPIBAIJ *xx=(Mat_MPIBAIJ *)X->data,*yy=(Mat_MPIBAIJ *)Y->data; 17794fe895cdSHong Zhang PetscBLASInt bnz,one=1; 17804fe895cdSHong Zhang Mat_SeqBAIJ *x,*y; 17814fe895cdSHong Zhang 17824fe895cdSHong Zhang PetscFunctionBegin; 17834fe895cdSHong Zhang if (str == SAME_NONZERO_PATTERN) { 17844fe895cdSHong Zhang PetscScalar alpha = a; 17854fe895cdSHong Zhang x = (Mat_SeqBAIJ *)xx->A->data; 17864fe895cdSHong Zhang y = (Mat_SeqBAIJ *)yy->A->data; 17870805154bSBarry Smith bnz = PetscBLASIntCast(x->nz); 17884fe895cdSHong Zhang BLASaxpy_(&bnz,&alpha,x->a,&one,y->a,&one); 17894fe895cdSHong Zhang x = (Mat_SeqBAIJ *)xx->B->data; 17904fe895cdSHong Zhang y = (Mat_SeqBAIJ *)yy->B->data; 17910805154bSBarry Smith bnz = PetscBLASIntCast(x->nz); 17924fe895cdSHong Zhang BLASaxpy_(&bnz,&alpha,x->a,&one,y->a,&one); 17934fe895cdSHong Zhang } else { 17944fe895cdSHong Zhang ierr = MatAXPY_Basic(Y,a,X,str);CHKERRQ(ierr); 17954fe895cdSHong Zhang } 17964fe895cdSHong Zhang PetscFunctionReturn(0); 17974fe895cdSHong Zhang } 17984fe895cdSHong Zhang 179999cafbc1SBarry Smith #undef __FUNCT__ 180099cafbc1SBarry Smith #define __FUNCT__ "MatRealPart_MPIBAIJ" 180199cafbc1SBarry Smith PetscErrorCode MatRealPart_MPIBAIJ(Mat A) 180299cafbc1SBarry Smith { 180399cafbc1SBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 180499cafbc1SBarry Smith PetscErrorCode ierr; 180599cafbc1SBarry Smith 180699cafbc1SBarry Smith PetscFunctionBegin; 180799cafbc1SBarry Smith ierr = MatRealPart(a->A);CHKERRQ(ierr); 180899cafbc1SBarry Smith ierr = MatRealPart(a->B);CHKERRQ(ierr); 180999cafbc1SBarry Smith PetscFunctionReturn(0); 181099cafbc1SBarry Smith } 181199cafbc1SBarry Smith 181299cafbc1SBarry Smith #undef __FUNCT__ 181399cafbc1SBarry Smith #define __FUNCT__ "MatImaginaryPart_MPIBAIJ" 181499cafbc1SBarry Smith PetscErrorCode MatImaginaryPart_MPIBAIJ(Mat A) 181599cafbc1SBarry Smith { 181699cafbc1SBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 181799cafbc1SBarry Smith PetscErrorCode ierr; 181899cafbc1SBarry Smith 181999cafbc1SBarry Smith PetscFunctionBegin; 182099cafbc1SBarry Smith ierr = MatImaginaryPart(a->A);CHKERRQ(ierr); 182199cafbc1SBarry Smith ierr = MatImaginaryPart(a->B);CHKERRQ(ierr); 182299cafbc1SBarry Smith PetscFunctionReturn(0); 182399cafbc1SBarry Smith } 182499cafbc1SBarry Smith 182582094794SBarry Smith #undef __FUNCT__ 182682094794SBarry Smith #define __FUNCT__ "MatGetSubMatrix_MPIBAIJ" 18274aa3045dSJed Brown PetscErrorCode MatGetSubMatrix_MPIBAIJ(Mat mat,IS isrow,IS iscol,MatReuse call,Mat *newmat) 18284aa3045dSJed Brown { 18294aa3045dSJed Brown PetscErrorCode ierr; 18304aa3045dSJed Brown IS iscol_local; 18314aa3045dSJed Brown PetscInt csize; 18324aa3045dSJed Brown 18334aa3045dSJed Brown PetscFunctionBegin; 18344aa3045dSJed Brown ierr = ISGetLocalSize(iscol,&csize);CHKERRQ(ierr); 1835*b79d0421SJed Brown if (call == MAT_REUSE_MATRIX) { 1836*b79d0421SJed Brown ierr = PetscObjectQuery((PetscObject)*newmat,"ISAllGather",(PetscObject*)&iscol_local);CHKERRQ(ierr); 1837*b79d0421SJed Brown if (!iscol_local) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Submatrix passed in was not used before, cannot reuse"); 1838*b79d0421SJed Brown } else { 18394aa3045dSJed Brown ierr = ISAllGather(iscol,&iscol_local);CHKERRQ(ierr); 1840*b79d0421SJed Brown } 18414aa3045dSJed Brown ierr = MatGetSubMatrix_MPIBAIJ_Private(mat,isrow,iscol_local,csize,call,newmat);CHKERRQ(ierr); 1842*b79d0421SJed Brown if (call == MAT_INITIAL_MATRIX) { 1843*b79d0421SJed Brown ierr = PetscObjectCompose((PetscObject)*newmat,"ISAllGather",(PetscObject)iscol_local);CHKERRQ(ierr); 18444aa3045dSJed Brown ierr = ISDestroy(iscol_local);CHKERRQ(ierr); 1845*b79d0421SJed Brown } 18464aa3045dSJed Brown PetscFunctionReturn(0); 18474aa3045dSJed Brown } 18484aa3045dSJed Brown 18494aa3045dSJed Brown #undef __FUNCT__ 18504aa3045dSJed Brown #define __FUNCT__ "MatGetSubMatrix_MPIBAIJ" 185182094794SBarry Smith /* 185282094794SBarry Smith Not great since it makes two copies of the submatrix, first an SeqBAIJ 185382094794SBarry Smith in local and then by concatenating the local matrices the end result. 185482094794SBarry Smith Writing it directly would be much like MatGetSubMatrices_MPIBAIJ() 185582094794SBarry Smith */ 18564aa3045dSJed Brown PetscErrorCode MatGetSubMatrix_MPIBAIJ_Private(Mat mat,IS isrow,IS iscol,PetscInt csize,MatReuse call,Mat *newmat) 185782094794SBarry Smith { 185882094794SBarry Smith PetscErrorCode ierr; 185982094794SBarry Smith PetscMPIInt rank,size; 186082094794SBarry Smith PetscInt i,m,n,rstart,row,rend,nz,*cwork,j,bs; 186182094794SBarry Smith PetscInt *ii,*jj,nlocal,*dlens,*olens,dlen,olen,jend,mglobal; 186282094794SBarry Smith Mat *local,M,Mreuse; 186382094794SBarry Smith MatScalar *vwork,*aa; 186482094794SBarry Smith MPI_Comm comm = ((PetscObject)mat)->comm; 186582094794SBarry Smith Mat_SeqBAIJ *aij; 186682094794SBarry Smith 186782094794SBarry Smith 186882094794SBarry Smith PetscFunctionBegin; 186982094794SBarry Smith ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 187082094794SBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 187182094794SBarry Smith 187282094794SBarry Smith if (call == MAT_REUSE_MATRIX) { 187382094794SBarry Smith ierr = PetscObjectQuery((PetscObject)*newmat,"SubMatrix",(PetscObject *)&Mreuse);CHKERRQ(ierr); 187482094794SBarry Smith if (!Mreuse) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Submatrix passed in was not used before, cannot reuse"); 187582094794SBarry Smith local = &Mreuse; 187682094794SBarry Smith ierr = MatGetSubMatrices(mat,1,&isrow,&iscol,MAT_REUSE_MATRIX,&local);CHKERRQ(ierr); 187782094794SBarry Smith } else { 187882094794SBarry Smith ierr = MatGetSubMatrices(mat,1,&isrow,&iscol,MAT_INITIAL_MATRIX,&local);CHKERRQ(ierr); 187982094794SBarry Smith Mreuse = *local; 188082094794SBarry Smith ierr = PetscFree(local);CHKERRQ(ierr); 188182094794SBarry Smith } 188282094794SBarry Smith 188382094794SBarry Smith /* 188482094794SBarry Smith m - number of local rows 188582094794SBarry Smith n - number of columns (same on all processors) 188682094794SBarry Smith rstart - first row in new global matrix generated 188782094794SBarry Smith */ 188882094794SBarry Smith ierr = MatGetBlockSize(mat,&bs);CHKERRQ(ierr); 188982094794SBarry Smith ierr = MatGetSize(Mreuse,&m,&n);CHKERRQ(ierr); 189082094794SBarry Smith m = m/bs; 189182094794SBarry Smith n = n/bs; 189282094794SBarry Smith 189382094794SBarry Smith if (call == MAT_INITIAL_MATRIX) { 189482094794SBarry Smith aij = (Mat_SeqBAIJ*)(Mreuse)->data; 189582094794SBarry Smith ii = aij->i; 189682094794SBarry Smith jj = aij->j; 189782094794SBarry Smith 189882094794SBarry Smith /* 189982094794SBarry Smith Determine the number of non-zeros in the diagonal and off-diagonal 190082094794SBarry Smith portions of the matrix in order to do correct preallocation 190182094794SBarry Smith */ 190282094794SBarry Smith 190382094794SBarry Smith /* first get start and end of "diagonal" columns */ 190482094794SBarry Smith if (csize == PETSC_DECIDE) { 190582094794SBarry Smith ierr = ISGetSize(isrow,&mglobal);CHKERRQ(ierr); 190682094794SBarry Smith if (mglobal == n*bs) { /* square matrix */ 190782094794SBarry Smith nlocal = m; 190882094794SBarry Smith } else { 190982094794SBarry Smith nlocal = n/size + ((n % size) > rank); 191082094794SBarry Smith } 191182094794SBarry Smith } else { 191282094794SBarry Smith nlocal = csize/bs; 191382094794SBarry Smith } 191482094794SBarry Smith ierr = MPI_Scan(&nlocal,&rend,1,MPIU_INT,MPI_SUM,comm);CHKERRQ(ierr); 191582094794SBarry Smith rstart = rend - nlocal; 191682094794SBarry Smith if (rank == size - 1 && rend != n) { 191782094794SBarry Smith SETERRQ2(PETSC_ERR_ARG_SIZ,"Local column sizes %D do not add up to total number of columns %D",rend,n); 191882094794SBarry Smith } 191982094794SBarry Smith 192082094794SBarry Smith /* next, compute all the lengths */ 192182094794SBarry Smith ierr = PetscMalloc((2*m+1)*sizeof(PetscInt),&dlens);CHKERRQ(ierr); 192282094794SBarry Smith olens = dlens + m; 192382094794SBarry Smith for (i=0; i<m; i++) { 192482094794SBarry Smith jend = ii[i+1] - ii[i]; 192582094794SBarry Smith olen = 0; 192682094794SBarry Smith dlen = 0; 192782094794SBarry Smith for (j=0; j<jend; j++) { 192882094794SBarry Smith if (*jj < rstart || *jj >= rend) olen++; 192982094794SBarry Smith else dlen++; 193082094794SBarry Smith jj++; 193182094794SBarry Smith } 193282094794SBarry Smith olens[i] = olen; 193382094794SBarry Smith dlens[i] = dlen; 193482094794SBarry Smith } 193582094794SBarry Smith ierr = MatCreate(comm,&M);CHKERRQ(ierr); 193682094794SBarry Smith ierr = MatSetSizes(M,bs*m,bs*nlocal,PETSC_DECIDE,bs*n);CHKERRQ(ierr); 193782094794SBarry Smith ierr = MatSetType(M,((PetscObject)mat)->type_name);CHKERRQ(ierr); 193882094794SBarry Smith ierr = MatMPIBAIJSetPreallocation(M,bs,0,dlens,0,olens);CHKERRQ(ierr); 193982094794SBarry Smith ierr = PetscFree(dlens);CHKERRQ(ierr); 194082094794SBarry Smith } else { 194182094794SBarry Smith PetscInt ml,nl; 194282094794SBarry Smith 194382094794SBarry Smith M = *newmat; 194482094794SBarry Smith ierr = MatGetLocalSize(M,&ml,&nl);CHKERRQ(ierr); 194582094794SBarry Smith if (ml != m) SETERRQ(PETSC_ERR_ARG_SIZ,"Previous matrix must be same size/layout as request"); 194682094794SBarry Smith ierr = MatZeroEntries(M);CHKERRQ(ierr); 194782094794SBarry Smith /* 194882094794SBarry Smith The next two lines are needed so we may call MatSetValues_MPIAIJ() below directly, 194982094794SBarry Smith rather than the slower MatSetValues(). 195082094794SBarry Smith */ 195182094794SBarry Smith M->was_assembled = PETSC_TRUE; 195282094794SBarry Smith M->assembled = PETSC_FALSE; 195382094794SBarry Smith } 195482094794SBarry Smith ierr = MatSetOption(M,MAT_ROW_ORIENTED,PETSC_FALSE);CHKERRQ(ierr); 195582094794SBarry Smith ierr = MatGetOwnershipRange(M,&rstart,&rend);CHKERRQ(ierr); 195682094794SBarry Smith aij = (Mat_SeqBAIJ*)(Mreuse)->data; 195782094794SBarry Smith ii = aij->i; 195882094794SBarry Smith jj = aij->j; 195982094794SBarry Smith aa = aij->a; 196082094794SBarry Smith for (i=0; i<m; i++) { 196182094794SBarry Smith row = rstart/bs + i; 196282094794SBarry Smith nz = ii[i+1] - ii[i]; 196382094794SBarry Smith cwork = jj; jj += nz; 196482094794SBarry Smith vwork = aa; aa += nz; 196582094794SBarry Smith ierr = MatSetValuesBlocked_MPIBAIJ(M,1,&row,nz,cwork,vwork,INSERT_VALUES);CHKERRQ(ierr); 196682094794SBarry Smith } 196782094794SBarry Smith 196882094794SBarry Smith ierr = MatAssemblyBegin(M,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 196982094794SBarry Smith ierr = MatAssemblyEnd(M,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 197082094794SBarry Smith *newmat = M; 197182094794SBarry Smith 197282094794SBarry Smith /* save submatrix used in processor for next request */ 197382094794SBarry Smith if (call == MAT_INITIAL_MATRIX) { 197482094794SBarry Smith ierr = PetscObjectCompose((PetscObject)M,"SubMatrix",(PetscObject)Mreuse);CHKERRQ(ierr); 197582094794SBarry Smith ierr = PetscObjectDereference((PetscObject)Mreuse);CHKERRQ(ierr); 197682094794SBarry Smith } 197782094794SBarry Smith 197882094794SBarry Smith PetscFunctionReturn(0); 197982094794SBarry Smith } 198082094794SBarry Smith 198182094794SBarry Smith #undef __FUNCT__ 198282094794SBarry Smith #define __FUNCT__ "MatPermute_MPIBAIJ" 198382094794SBarry Smith PetscErrorCode MatPermute_MPIBAIJ(Mat A,IS rowp,IS colp,Mat *B) 198482094794SBarry Smith { 198582094794SBarry Smith MPI_Comm comm,pcomm; 198682094794SBarry Smith PetscInt first,local_size,nrows; 198782094794SBarry Smith const PetscInt *rows; 1988dbf0e21dSBarry Smith PetscMPIInt size; 198982094794SBarry Smith IS crowp,growp,irowp,lrowp,lcolp,icolp; 199082094794SBarry Smith PetscErrorCode ierr; 199182094794SBarry Smith 199282094794SBarry Smith PetscFunctionBegin; 199382094794SBarry Smith ierr = PetscObjectGetComm((PetscObject)A,&comm);CHKERRQ(ierr); 199482094794SBarry Smith /* make a collective version of 'rowp' */ 199582094794SBarry Smith ierr = PetscObjectGetComm((PetscObject)rowp,&pcomm);CHKERRQ(ierr); 199682094794SBarry Smith if (pcomm==comm) { 199782094794SBarry Smith crowp = rowp; 199882094794SBarry Smith } else { 199982094794SBarry Smith ierr = ISGetSize(rowp,&nrows);CHKERRQ(ierr); 200082094794SBarry Smith ierr = ISGetIndices(rowp,&rows);CHKERRQ(ierr); 200182094794SBarry Smith ierr = ISCreateGeneral(comm,nrows,rows,&crowp);CHKERRQ(ierr); 200282094794SBarry Smith ierr = ISRestoreIndices(rowp,&rows);CHKERRQ(ierr); 200382094794SBarry Smith } 200482094794SBarry Smith /* collect the global row permutation and invert it */ 200582094794SBarry Smith ierr = ISAllGather(crowp,&growp);CHKERRQ(ierr); 200682094794SBarry Smith ierr = ISSetPermutation(growp);CHKERRQ(ierr); 200782094794SBarry Smith if (pcomm!=comm) { 200882094794SBarry Smith ierr = ISDestroy(crowp);CHKERRQ(ierr); 200982094794SBarry Smith } 201082094794SBarry Smith ierr = ISInvertPermutation(growp,PETSC_DECIDE,&irowp);CHKERRQ(ierr); 201182094794SBarry Smith /* get the local target indices */ 201282094794SBarry Smith ierr = MatGetOwnershipRange(A,&first,PETSC_NULL);CHKERRQ(ierr); 201382094794SBarry Smith ierr = MatGetLocalSize(A,&local_size,PETSC_NULL);CHKERRQ(ierr); 201482094794SBarry Smith ierr = ISGetIndices(irowp,&rows);CHKERRQ(ierr); 201582094794SBarry Smith ierr = ISCreateGeneral(MPI_COMM_SELF,local_size,rows+first,&lrowp);CHKERRQ(ierr); 201682094794SBarry Smith ierr = ISRestoreIndices(irowp,&rows);CHKERRQ(ierr); 201782094794SBarry Smith ierr = ISDestroy(irowp);CHKERRQ(ierr); 201882094794SBarry Smith /* the column permutation is so much easier; 201982094794SBarry Smith make a local version of 'colp' and invert it */ 202082094794SBarry Smith ierr = PetscObjectGetComm((PetscObject)colp,&pcomm);CHKERRQ(ierr); 2021dbf0e21dSBarry Smith ierr = MPI_Comm_size(pcomm,&size);CHKERRQ(ierr); 2022dbf0e21dSBarry Smith if (size==1) { 202382094794SBarry Smith lcolp = colp; 202482094794SBarry Smith } else { 202582094794SBarry Smith ierr = ISGetSize(colp,&nrows);CHKERRQ(ierr); 202682094794SBarry Smith ierr = ISGetIndices(colp,&rows);CHKERRQ(ierr); 202782094794SBarry Smith ierr = ISCreateGeneral(MPI_COMM_SELF,nrows,rows,&lcolp);CHKERRQ(ierr); 202882094794SBarry Smith } 2029dbf0e21dSBarry Smith ierr = ISSetPermutation(lcolp);CHKERRQ(ierr); 203082094794SBarry Smith ierr = ISInvertPermutation(lcolp,PETSC_DECIDE,&icolp);CHKERRQ(ierr); 20314aa3045dSJed Brown ierr = ISSetPermutation(icolp);CHKERRQ(ierr); 2032dbf0e21dSBarry Smith if (size>1) { 203382094794SBarry Smith ierr = ISRestoreIndices(colp,&rows);CHKERRQ(ierr); 203482094794SBarry Smith ierr = ISDestroy(lcolp);CHKERRQ(ierr); 203582094794SBarry Smith } 203682094794SBarry Smith /* now we just get the submatrix */ 20374aa3045dSJed Brown ierr = MatGetSubMatrix_MPIBAIJ_Private(A,lrowp,icolp,local_size,MAT_INITIAL_MATRIX,B);CHKERRQ(ierr); 203882094794SBarry Smith /* clean up */ 203982094794SBarry Smith ierr = ISDestroy(lrowp);CHKERRQ(ierr); 204082094794SBarry Smith ierr = ISDestroy(icolp);CHKERRQ(ierr); 204182094794SBarry Smith PetscFunctionReturn(0); 204282094794SBarry Smith } 204382094794SBarry Smith 20448c7482ecSBarry Smith #undef __FUNCT__ 20458c7482ecSBarry Smith #define __FUNCT__ "MatGetGhosts_MPIBAIJ" 20468c7482ecSBarry Smith PetscErrorCode PETSCMAT_DLLEXPORT MatGetGhosts_MPIBAIJ(Mat mat,PetscInt *nghosts,const PetscInt *ghosts[]) 20478c7482ecSBarry Smith { 20488c7482ecSBarry Smith Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*) mat->data; 20498c7482ecSBarry Smith Mat_SeqBAIJ *B = (Mat_SeqBAIJ*)baij->B->data; 20508c7482ecSBarry Smith 20518c7482ecSBarry Smith PetscFunctionBegin; 20528c7482ecSBarry Smith if (nghosts) { *nghosts = B->nbs;} 20538c7482ecSBarry Smith if (ghosts) {*ghosts = baij->garray;} 20548c7482ecSBarry Smith PetscFunctionReturn(0); 20558c7482ecSBarry Smith } 20568c7482ecSBarry Smith 20578c7482ecSBarry Smith 205879bdfe76SSatish Balay /* -------------------------------------------------------------------*/ 2059cc2dc46cSBarry Smith static struct _MatOps MatOps_Values = { 2060cc2dc46cSBarry Smith MatSetValues_MPIBAIJ, 2061cc2dc46cSBarry Smith MatGetRow_MPIBAIJ, 2062cc2dc46cSBarry Smith MatRestoreRow_MPIBAIJ, 2063cc2dc46cSBarry Smith MatMult_MPIBAIJ, 206497304618SKris Buschelman /* 4*/ MatMultAdd_MPIBAIJ, 20657c922b88SBarry Smith MatMultTranspose_MPIBAIJ, 20667c922b88SBarry Smith MatMultTransposeAdd_MPIBAIJ, 2067cc2dc46cSBarry Smith 0, 2068cc2dc46cSBarry Smith 0, 2069cc2dc46cSBarry Smith 0, 207097304618SKris Buschelman /*10*/ 0, 2071cc2dc46cSBarry Smith 0, 2072cc2dc46cSBarry Smith 0, 2073cc2dc46cSBarry Smith 0, 2074cc2dc46cSBarry Smith MatTranspose_MPIBAIJ, 207597304618SKris Buschelman /*15*/ MatGetInfo_MPIBAIJ, 20767fc3c18eSBarry Smith MatEqual_MPIBAIJ, 2077cc2dc46cSBarry Smith MatGetDiagonal_MPIBAIJ, 2078cc2dc46cSBarry Smith MatDiagonalScale_MPIBAIJ, 2079cc2dc46cSBarry Smith MatNorm_MPIBAIJ, 208097304618SKris Buschelman /*20*/ MatAssemblyBegin_MPIBAIJ, 2081cc2dc46cSBarry Smith MatAssemblyEnd_MPIBAIJ, 2082cc2dc46cSBarry Smith MatSetOption_MPIBAIJ, 2083cc2dc46cSBarry Smith MatZeroEntries_MPIBAIJ, 2084d519adbfSMatthew Knepley /*24*/ MatZeroRows_MPIBAIJ, 2085cc2dc46cSBarry Smith 0, 2086cc2dc46cSBarry Smith 0, 2087cc2dc46cSBarry Smith 0, 2088cc2dc46cSBarry Smith 0, 2089d519adbfSMatthew Knepley /*29*/ MatSetUpPreallocation_MPIBAIJ, 2090273d9f13SBarry Smith 0, 2091cc2dc46cSBarry Smith 0, 2092cc2dc46cSBarry Smith 0, 2093cc2dc46cSBarry Smith 0, 2094d519adbfSMatthew Knepley /*34*/ MatDuplicate_MPIBAIJ, 2095cc2dc46cSBarry Smith 0, 2096cc2dc46cSBarry Smith 0, 2097cc2dc46cSBarry Smith 0, 2098cc2dc46cSBarry Smith 0, 2099d519adbfSMatthew Knepley /*39*/ MatAXPY_MPIBAIJ, 2100cc2dc46cSBarry Smith MatGetSubMatrices_MPIBAIJ, 2101cc2dc46cSBarry Smith MatIncreaseOverlap_MPIBAIJ, 2102cc2dc46cSBarry Smith MatGetValues_MPIBAIJ, 21033c896bc6SHong Zhang MatCopy_MPIBAIJ, 2104d519adbfSMatthew Knepley /*44*/ 0, 2105cc2dc46cSBarry Smith MatScale_MPIBAIJ, 2106cc2dc46cSBarry Smith 0, 2107cc2dc46cSBarry Smith 0, 2108cc2dc46cSBarry Smith 0, 2109d519adbfSMatthew Knepley /*49*/ 0, 2110cc2dc46cSBarry Smith 0, 2111cc2dc46cSBarry Smith 0, 2112cc2dc46cSBarry Smith 0, 2113cc2dc46cSBarry Smith 0, 2114d519adbfSMatthew Knepley /*54*/ 0, 2115cc2dc46cSBarry Smith 0, 2116cc2dc46cSBarry Smith MatSetUnfactored_MPIBAIJ, 211782094794SBarry Smith MatPermute_MPIBAIJ, 2118cc2dc46cSBarry Smith MatSetValuesBlocked_MPIBAIJ, 2119d519adbfSMatthew Knepley /*59*/ MatGetSubMatrix_MPIBAIJ, 2120f14a1c24SBarry Smith MatDestroy_MPIBAIJ, 2121f14a1c24SBarry Smith MatView_MPIBAIJ, 2122357abbc8SBarry Smith 0, 21237843d17aSBarry Smith 0, 2124d519adbfSMatthew Knepley /*64*/ 0, 21257843d17aSBarry Smith 0, 21267843d17aSBarry Smith 0, 21277843d17aSBarry Smith 0, 21287843d17aSBarry Smith 0, 2129d519adbfSMatthew Knepley /*69*/ MatGetRowMaxAbs_MPIBAIJ, 21307843d17aSBarry Smith 0, 213197304618SKris Buschelman 0, 213297304618SKris Buschelman 0, 213397304618SKris Buschelman 0, 2134d519adbfSMatthew Knepley /*74*/ 0, 213597304618SKris Buschelman 0, 213697304618SKris Buschelman 0, 213797304618SKris Buschelman 0, 213897304618SKris Buschelman 0, 2139d519adbfSMatthew Knepley /*79*/ 0, 214097304618SKris Buschelman 0, 214197304618SKris Buschelman 0, 214297304618SKris Buschelman 0, 2143865e5f61SKris Buschelman MatLoad_MPIBAIJ, 2144d519adbfSMatthew Knepley /*84*/ 0, 2145865e5f61SKris Buschelman 0, 2146865e5f61SKris Buschelman 0, 2147865e5f61SKris Buschelman 0, 2148865e5f61SKris Buschelman 0, 2149d519adbfSMatthew Knepley /*89*/ 0, 2150865e5f61SKris Buschelman 0, 2151865e5f61SKris Buschelman 0, 2152865e5f61SKris Buschelman 0, 2153865e5f61SKris Buschelman 0, 2154d519adbfSMatthew Knepley /*94*/ 0, 2155865e5f61SKris Buschelman 0, 2156865e5f61SKris Buschelman 0, 215799cafbc1SBarry Smith 0, 215899cafbc1SBarry Smith 0, 2159d519adbfSMatthew Knepley /*99*/ 0, 216099cafbc1SBarry Smith 0, 216199cafbc1SBarry Smith 0, 216299cafbc1SBarry Smith 0, 216399cafbc1SBarry Smith 0, 2164d519adbfSMatthew Knepley /*104*/0, 216599cafbc1SBarry Smith MatRealPart_MPIBAIJ, 21668c7482ecSBarry Smith MatImaginaryPart_MPIBAIJ, 21678c7482ecSBarry Smith 0, 21688c7482ecSBarry Smith 0, 2169d519adbfSMatthew Knepley /*109*/0, 21708c7482ecSBarry Smith 0, 21718c7482ecSBarry Smith 0, 21728c7482ecSBarry Smith 0, 21738c7482ecSBarry Smith 0, 2174d519adbfSMatthew Knepley /*114*/0, 21758c7482ecSBarry Smith 0, 21768c7482ecSBarry Smith MatGetGhosts_MPIBAIJ 21778c7482ecSBarry Smith }; 217879bdfe76SSatish Balay 21795ef9f2a5SBarry Smith 2180e18c124aSSatish Balay EXTERN_C_BEGIN 21814a2ae208SSatish Balay #undef __FUNCT__ 21824a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonalBlock_MPIBAIJ" 2183be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatGetDiagonalBlock_MPIBAIJ(Mat A,PetscTruth *iscopy,MatReuse reuse,Mat *a) 21845ef9f2a5SBarry Smith { 21855ef9f2a5SBarry Smith PetscFunctionBegin; 21865ef9f2a5SBarry Smith *a = ((Mat_MPIBAIJ *)A->data)->A; 21875ef9f2a5SBarry Smith *iscopy = PETSC_FALSE; 21885ef9f2a5SBarry Smith PetscFunctionReturn(0); 21895ef9f2a5SBarry Smith } 2190e18c124aSSatish Balay EXTERN_C_END 219179bdfe76SSatish Balay 2192273d9f13SBarry Smith EXTERN_C_BEGIN 2193f69a0ea3SMatthew Knepley extern PetscErrorCode PETSCMAT_DLLEXPORT MatConvert_MPIBAIJ_MPISBAIJ(Mat, MatType,MatReuse,Mat*); 2194d94109b8SHong Zhang EXTERN_C_END 2195d94109b8SHong Zhang 2196b8d659d7SLisandro Dalcin EXTERN_C_BEGIN 2197aac34f13SBarry Smith #undef __FUNCT__ 2198aac34f13SBarry Smith #define __FUNCT__ "MatMPIBAIJSetPreallocationCSR_MPIBAIJ" 2199cf12db73SBarry Smith PetscErrorCode MatMPIBAIJSetPreallocationCSR_MPIBAIJ(Mat B,PetscInt bs,const PetscInt ii[],const PetscInt jj[],const PetscScalar V[]) 2200aac34f13SBarry Smith { 2201b8d659d7SLisandro Dalcin PetscInt m,rstart,cstart,cend; 2202b8d659d7SLisandro Dalcin PetscInt i,j,d,nz,nz_max=0,*d_nnz=0,*o_nnz=0; 2203b8d659d7SLisandro Dalcin const PetscInt *JJ=0; 2204b8d659d7SLisandro Dalcin PetscScalar *values=0; 2205aac34f13SBarry Smith PetscErrorCode ierr; 2206aac34f13SBarry Smith 2207aac34f13SBarry Smith PetscFunctionBegin; 2208b8d659d7SLisandro Dalcin 2209b8d659d7SLisandro Dalcin if (bs < 1) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Invalid block size specified, must be positive but it is %D",bs); 22107408324eSLisandro Dalcin ierr = PetscMapSetBlockSize(B->rmap,bs);CHKERRQ(ierr); 22117408324eSLisandro Dalcin ierr = PetscMapSetBlockSize(B->cmap,bs);CHKERRQ(ierr); 2212d0f46423SBarry Smith ierr = PetscMapSetUp(B->rmap);CHKERRQ(ierr); 2213d0f46423SBarry Smith ierr = PetscMapSetUp(B->cmap);CHKERRQ(ierr); 2214d0f46423SBarry Smith m = B->rmap->n/bs; 2215d0f46423SBarry Smith rstart = B->rmap->rstart/bs; 2216d0f46423SBarry Smith cstart = B->cmap->rstart/bs; 2217d0f46423SBarry Smith cend = B->cmap->rend/bs; 2218b8d659d7SLisandro Dalcin 2219cf12db73SBarry Smith if (ii[0]) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"ii[0] must be 0 but it is %D",ii[0]); 2220aac34f13SBarry Smith ierr = PetscMalloc((2*m+1)*sizeof(PetscInt),&d_nnz);CHKERRQ(ierr); 2221aac34f13SBarry Smith o_nnz = d_nnz + m; 2222aac34f13SBarry Smith for (i=0; i<m; i++) { 2223cf12db73SBarry Smith nz = ii[i+1] - ii[i]; 2224b8d659d7SLisandro Dalcin if (nz < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Local row %D has a negative number of columns %D",i,nz); 2225b8d659d7SLisandro Dalcin nz_max = PetscMax(nz_max,nz); 2226cf12db73SBarry Smith JJ = jj + ii[i]; 2227b8d659d7SLisandro Dalcin for (j=0; j<nz; j++) { 2228aac34f13SBarry Smith if (*JJ >= cstart) break; 2229aac34f13SBarry Smith JJ++; 2230aac34f13SBarry Smith } 2231aac34f13SBarry Smith d = 0; 2232b8d659d7SLisandro Dalcin for (; j<nz; j++) { 2233aac34f13SBarry Smith if (*JJ++ >= cend) break; 2234aac34f13SBarry Smith d++; 2235aac34f13SBarry Smith } 2236aac34f13SBarry Smith d_nnz[i] = d; 2237b8d659d7SLisandro Dalcin o_nnz[i] = nz - d; 2238aac34f13SBarry Smith } 2239aac34f13SBarry Smith ierr = MatMPIBAIJSetPreallocation(B,bs,0,d_nnz,0,o_nnz);CHKERRQ(ierr); 2240aac34f13SBarry Smith ierr = PetscFree(d_nnz);CHKERRQ(ierr); 2241aac34f13SBarry Smith 2242b8d659d7SLisandro Dalcin values = (PetscScalar*)V; 2243b8d659d7SLisandro Dalcin if (!values) { 2244b8d659d7SLisandro Dalcin ierr = PetscMalloc(bs*bs*(nz_max+1)*sizeof(PetscScalar),&values);CHKERRQ(ierr); 2245b8d659d7SLisandro Dalcin ierr = PetscMemzero(values,bs*bs*nz_max*sizeof(PetscScalar));CHKERRQ(ierr); 2246b8d659d7SLisandro Dalcin } 2247b8d659d7SLisandro Dalcin for (i=0; i<m; i++) { 2248b8d659d7SLisandro Dalcin PetscInt row = i + rstart; 2249cf12db73SBarry Smith PetscInt ncols = ii[i+1] - ii[i]; 2250cf12db73SBarry Smith const PetscInt *icols = jj + ii[i]; 2251cf12db73SBarry Smith const PetscScalar *svals = values + (V ? (bs*bs*ii[i]) : 0); 2252b8d659d7SLisandro Dalcin ierr = MatSetValuesBlocked_MPIBAIJ(B,1,&row,ncols,icols,svals,INSERT_VALUES);CHKERRQ(ierr); 2253aac34f13SBarry Smith } 2254aac34f13SBarry Smith 2255b8d659d7SLisandro Dalcin if (!V) { ierr = PetscFree(values);CHKERRQ(ierr); } 2256aac34f13SBarry Smith ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 2257aac34f13SBarry Smith ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 2258aac34f13SBarry Smith 2259aac34f13SBarry Smith PetscFunctionReturn(0); 2260aac34f13SBarry Smith } 2261b8d659d7SLisandro Dalcin EXTERN_C_END 2262aac34f13SBarry Smith 2263aac34f13SBarry Smith #undef __FUNCT__ 2264aac34f13SBarry Smith #define __FUNCT__ "MatMPIBAIJSetPreallocationCSR" 2265aac34f13SBarry Smith /*@C 2266aac34f13SBarry Smith MatMPIBAIJSetPreallocationCSR - Allocates memory for a sparse parallel matrix in AIJ format 2267aac34f13SBarry Smith (the default parallel PETSc format). 2268aac34f13SBarry Smith 2269aac34f13SBarry Smith Collective on MPI_Comm 2270aac34f13SBarry Smith 2271aac34f13SBarry Smith Input Parameters: 2272aac34f13SBarry Smith + A - the matrix 2273aac34f13SBarry Smith . i - the indices into j for the start of each local row (starts with zero) 2274aac34f13SBarry Smith . j - the column indices for each local row (starts with zero) these must be sorted for each row 2275aac34f13SBarry Smith - v - optional values in the matrix 2276aac34f13SBarry Smith 2277aac34f13SBarry Smith Level: developer 2278aac34f13SBarry Smith 2279aac34f13SBarry Smith .keywords: matrix, aij, compressed row, sparse, parallel 2280aac34f13SBarry Smith 2281aac34f13SBarry Smith .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatMPIBAIJSetPreallocation(), MatCreateMPIAIJ(), MPIAIJ 2282aac34f13SBarry Smith @*/ 2283be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPIBAIJSetPreallocationCSR(Mat B,PetscInt bs,const PetscInt i[],const PetscInt j[], const PetscScalar v[]) 2284aac34f13SBarry Smith { 2285aac34f13SBarry Smith PetscErrorCode ierr,(*f)(Mat,PetscInt,const PetscInt[],const PetscInt[],const PetscScalar[]); 2286aac34f13SBarry Smith 2287aac34f13SBarry Smith PetscFunctionBegin; 2288aac34f13SBarry Smith ierr = PetscObjectQueryFunction((PetscObject)B,"MatMPIBAIJSetPreallocationCSR_C",(void (**)(void))&f);CHKERRQ(ierr); 2289aac34f13SBarry Smith if (f) { 2290aac34f13SBarry Smith ierr = (*f)(B,bs,i,j,v);CHKERRQ(ierr); 2291aac34f13SBarry Smith } 2292aac34f13SBarry Smith PetscFunctionReturn(0); 2293aac34f13SBarry Smith } 2294aac34f13SBarry Smith 2295d94109b8SHong Zhang EXTERN_C_BEGIN 22964a2ae208SSatish Balay #undef __FUNCT__ 2297a23d5eceSKris Buschelman #define __FUNCT__ "MatMPIBAIJSetPreallocation_MPIBAIJ" 2298be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPIBAIJSetPreallocation_MPIBAIJ(Mat B,PetscInt bs,PetscInt d_nz,PetscInt *d_nnz,PetscInt o_nz,PetscInt *o_nnz) 2299a23d5eceSKris Buschelman { 2300a23d5eceSKris Buschelman Mat_MPIBAIJ *b; 2301dfbe8321SBarry Smith PetscErrorCode ierr; 2302db4efbfdSBarry Smith PetscInt i, newbs = PetscAbs(bs); 2303a23d5eceSKris Buschelman 2304a23d5eceSKris Buschelman PetscFunctionBegin; 2305db4efbfdSBarry Smith if (bs < 0) { 23067adad957SLisandro Dalcin ierr = PetscOptionsBegin(((PetscObject)B)->comm,((PetscObject)B)->prefix,"Options for MPIBAIJ matrix","Mat");CHKERRQ(ierr); 2307db4efbfdSBarry Smith ierr = PetscOptionsInt("-mat_block_size","Set the blocksize used to store the matrix","MatMPIBAIJSetPreallocation",newbs,&newbs,PETSC_NULL);CHKERRQ(ierr); 23088c07d4e3SBarry Smith ierr = PetscOptionsEnd();CHKERRQ(ierr); 2309db4efbfdSBarry Smith bs = PetscAbs(bs); 2310db4efbfdSBarry Smith } 2311db4efbfdSBarry Smith if ((d_nnz || o_nnz) && newbs != bs) { 2312db4efbfdSBarry Smith SETERRQ(PETSC_ERR_ARG_WRONG,"Cannot change blocksize from command line if setting d_nnz or o_nnz"); 2313db4efbfdSBarry Smith } 2314db4efbfdSBarry Smith bs = newbs; 2315db4efbfdSBarry Smith 2316a23d5eceSKris Buschelman 2317a23d5eceSKris Buschelman if (bs < 1) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Invalid block size specified, must be positive"); 2318a23d5eceSKris Buschelman if (d_nz == PETSC_DEFAULT || d_nz == PETSC_DECIDE) d_nz = 5; 2319a23d5eceSKris Buschelman if (o_nz == PETSC_DEFAULT || o_nz == PETSC_DECIDE) o_nz = 2; 232077431f27SBarry Smith if (d_nz < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"d_nz cannot be less than 0: value %D",d_nz); 232177431f27SBarry Smith if (o_nz < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"o_nz cannot be less than 0: value %D",o_nz); 2322899cda47SBarry Smith 23237408324eSLisandro Dalcin ierr = PetscMapSetBlockSize(B->rmap,bs);CHKERRQ(ierr); 23247408324eSLisandro Dalcin ierr = PetscMapSetBlockSize(B->cmap,bs);CHKERRQ(ierr); 2325d0f46423SBarry Smith ierr = PetscMapSetUp(B->rmap);CHKERRQ(ierr); 2326d0f46423SBarry Smith ierr = PetscMapSetUp(B->cmap);CHKERRQ(ierr); 2327899cda47SBarry Smith 2328a23d5eceSKris Buschelman if (d_nnz) { 2329d0f46423SBarry Smith for (i=0; i<B->rmap->n/bs; i++) { 233077431f27SBarry Smith if (d_nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"d_nnz cannot be less than -1: local row %D value %D",i,d_nnz[i]); 2331a23d5eceSKris Buschelman } 2332a23d5eceSKris Buschelman } 2333a23d5eceSKris Buschelman if (o_nnz) { 2334d0f46423SBarry Smith for (i=0; i<B->rmap->n/bs; i++) { 233577431f27SBarry Smith if (o_nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"o_nnz cannot be less than -1: local row %D value %D",i,o_nnz[i]); 2336a23d5eceSKris Buschelman } 2337a23d5eceSKris Buschelman } 2338a23d5eceSKris Buschelman 2339a23d5eceSKris Buschelman b = (Mat_MPIBAIJ*)B->data; 2340a23d5eceSKris Buschelman b->bs2 = bs*bs; 2341d0f46423SBarry Smith b->mbs = B->rmap->n/bs; 2342d0f46423SBarry Smith b->nbs = B->cmap->n/bs; 2343d0f46423SBarry Smith b->Mbs = B->rmap->N/bs; 2344d0f46423SBarry Smith b->Nbs = B->cmap->N/bs; 2345a23d5eceSKris Buschelman 2346a23d5eceSKris Buschelman for (i=0; i<=b->size; i++) { 2347d0f46423SBarry Smith b->rangebs[i] = B->rmap->range[i]/bs; 2348a23d5eceSKris Buschelman } 2349d0f46423SBarry Smith b->rstartbs = B->rmap->rstart/bs; 2350d0f46423SBarry Smith b->rendbs = B->rmap->rend/bs; 2351d0f46423SBarry Smith b->cstartbs = B->cmap->rstart/bs; 2352d0f46423SBarry Smith b->cendbs = B->cmap->rend/bs; 2353a23d5eceSKris Buschelman 2354526dfc15SBarry Smith if (!B->preallocated) { 2355f69a0ea3SMatthew Knepley ierr = MatCreate(PETSC_COMM_SELF,&b->A);CHKERRQ(ierr); 2356d0f46423SBarry Smith ierr = MatSetSizes(b->A,B->rmap->n,B->cmap->n,B->rmap->n,B->cmap->n);CHKERRQ(ierr); 23579c097c71SKris Buschelman ierr = MatSetType(b->A,MATSEQBAIJ);CHKERRQ(ierr); 235852e6d16bSBarry Smith ierr = PetscLogObjectParent(B,b->A);CHKERRQ(ierr); 2359f69a0ea3SMatthew Knepley ierr = MatCreate(PETSC_COMM_SELF,&b->B);CHKERRQ(ierr); 2360d0f46423SBarry Smith ierr = MatSetSizes(b->B,B->rmap->n,B->cmap->N,B->rmap->n,B->cmap->N);CHKERRQ(ierr); 23619c097c71SKris Buschelman ierr = MatSetType(b->B,MATSEQBAIJ);CHKERRQ(ierr); 236252e6d16bSBarry Smith ierr = PetscLogObjectParent(B,b->B);CHKERRQ(ierr); 23637adad957SLisandro Dalcin ierr = MatStashCreate_Private(((PetscObject)B)->comm,bs,&B->bstash);CHKERRQ(ierr); 2364526dfc15SBarry Smith } 2365a23d5eceSKris Buschelman 2366526dfc15SBarry Smith ierr = MatSeqBAIJSetPreallocation(b->A,bs,d_nz,d_nnz);CHKERRQ(ierr); 2367526dfc15SBarry Smith ierr = MatSeqBAIJSetPreallocation(b->B,bs,o_nz,o_nnz);CHKERRQ(ierr); 2368526dfc15SBarry Smith B->preallocated = PETSC_TRUE; 2369a23d5eceSKris Buschelman PetscFunctionReturn(0); 2370a23d5eceSKris Buschelman } 2371a23d5eceSKris Buschelman EXTERN_C_END 2372a23d5eceSKris Buschelman 2373a23d5eceSKris Buschelman EXTERN_C_BEGIN 2374be1d678aSKris Buschelman EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatDiagonalScaleLocal_MPIBAIJ(Mat,Vec); 2375be1d678aSKris Buschelman EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatSetHashTableFactor_MPIBAIJ(Mat,PetscReal); 237692b32695SKris Buschelman EXTERN_C_END 23775bf65638SKris Buschelman 237882094794SBarry Smith 237982094794SBarry Smith EXTERN_C_BEGIN 238082094794SBarry Smith #undef __FUNCT__ 238182094794SBarry Smith #define __FUNCT__ "MatConvert_MPIBAIJ_MPIAdj" 238282094794SBarry Smith PetscErrorCode PETSCMAT_DLLEXPORT MatConvert_MPIBAIJ_MPIAdj(Mat B, const MatType newtype,MatReuse reuse,Mat *adj) 238382094794SBarry Smith { 238482094794SBarry Smith Mat_MPIBAIJ *b = (Mat_MPIBAIJ*)B->data; 238582094794SBarry Smith PetscErrorCode ierr; 238682094794SBarry Smith Mat_SeqBAIJ *d = (Mat_SeqBAIJ*) b->A->data,*o = (Mat_SeqBAIJ*) b->B->data; 238782094794SBarry Smith PetscInt M = B->rmap->n/B->rmap->bs,i,*ii,*jj,cnt,j,k,rstart = B->rmap->rstart/B->rmap->bs; 238882094794SBarry Smith const PetscInt *id = d->i, *jd = d->j, *io = o->i, *jo = o->j, *garray = b->garray; 238982094794SBarry Smith 239082094794SBarry Smith PetscFunctionBegin; 239182094794SBarry Smith ierr = PetscMalloc((M+1)*sizeof(PetscInt),&ii);CHKERRQ(ierr); 239282094794SBarry Smith ii[0] = 0; 239382094794SBarry Smith CHKMEMQ; 239482094794SBarry Smith for (i=0; i<M; i++) { 239582094794SBarry Smith if ((id[i+1] - id[i]) < 0) SETERRQ3(PETSC_ERR_PLIB,"Indices wrong %D %D %D",i,id[i],id[i+1]); 239682094794SBarry Smith if ((io[i+1] - io[i]) < 0) SETERRQ3(PETSC_ERR_PLIB,"Indices wrong %D %D %D",i,io[i],io[i+1]); 239782094794SBarry Smith ii[i+1] = ii[i] + id[i+1] - id[i] + io[i+1] - io[i]; 239882094794SBarry Smith /* remove one from count of matrix has diagonal */ 239982094794SBarry Smith for (j=id[i]; j<id[i+1]; j++) { 240082094794SBarry Smith if (jd[j] == i) {ii[i+1]--;break;} 240182094794SBarry Smith } 240282094794SBarry Smith CHKMEMQ; 240382094794SBarry Smith } 240482094794SBarry Smith ierr = PetscMalloc(ii[M]*sizeof(PetscInt),&jj);CHKERRQ(ierr); 240582094794SBarry Smith cnt = 0; 240682094794SBarry Smith for (i=0; i<M; i++) { 240782094794SBarry Smith for (j=io[i]; j<io[i+1]; j++) { 240882094794SBarry Smith if (garray[jo[j]] > rstart) break; 240982094794SBarry Smith jj[cnt++] = garray[jo[j]]; 241082094794SBarry Smith CHKMEMQ; 241182094794SBarry Smith } 241282094794SBarry Smith for (k=id[i]; k<id[i+1]; k++) { 241382094794SBarry Smith if (jd[k] != i) { 241482094794SBarry Smith jj[cnt++] = rstart + jd[k]; 241582094794SBarry Smith CHKMEMQ; 241682094794SBarry Smith } 241782094794SBarry Smith } 241882094794SBarry Smith for (;j<io[i+1]; j++) { 241982094794SBarry Smith jj[cnt++] = garray[jo[j]]; 242082094794SBarry Smith CHKMEMQ; 242182094794SBarry Smith } 242282094794SBarry Smith } 242382094794SBarry Smith ierr = MatCreateMPIAdj(((PetscObject)B)->comm,M,B->cmap->N/B->rmap->bs,ii,jj,PETSC_NULL,adj);CHKERRQ(ierr); 242482094794SBarry Smith PetscFunctionReturn(0); 242582094794SBarry Smith } 2426dbf0e21dSBarry Smith EXTERN_C_END 242782094794SBarry Smith 24280bad9183SKris Buschelman /*MC 2429fafad747SKris Buschelman MATMPIBAIJ - MATMPIBAIJ = "mpibaij" - A matrix type to be used for distributed block sparse matrices. 24300bad9183SKris Buschelman 24310bad9183SKris Buschelman Options Database Keys: 24328c07d4e3SBarry Smith + -mat_type mpibaij - sets the matrix type to "mpibaij" during a call to MatSetFromOptions() 24338c07d4e3SBarry Smith . -mat_block_size <bs> - set the blocksize used to store the matrix 24348c07d4e3SBarry Smith - -mat_use_hash_table <fact> 24350bad9183SKris Buschelman 24360bad9183SKris Buschelman Level: beginner 24370bad9183SKris Buschelman 24380bad9183SKris Buschelman .seealso: MatCreateMPIBAIJ 24390bad9183SKris Buschelman M*/ 24400bad9183SKris Buschelman 244192b32695SKris Buschelman EXTERN_C_BEGIN 2442a23d5eceSKris Buschelman #undef __FUNCT__ 24434a2ae208SSatish Balay #define __FUNCT__ "MatCreate_MPIBAIJ" 2444be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreate_MPIBAIJ(Mat B) 2445273d9f13SBarry Smith { 2446273d9f13SBarry Smith Mat_MPIBAIJ *b; 2447dfbe8321SBarry Smith PetscErrorCode ierr; 2448273d9f13SBarry Smith PetscTruth flg; 2449273d9f13SBarry Smith 2450273d9f13SBarry Smith PetscFunctionBegin; 245138f2d2fdSLisandro Dalcin ierr = PetscNewLog(B,Mat_MPIBAIJ,&b);CHKERRQ(ierr); 245282502324SSatish Balay B->data = (void*)b; 245382502324SSatish Balay 2454085a36d4SBarry Smith 2455273d9f13SBarry Smith ierr = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr); 2456273d9f13SBarry Smith B->mapping = 0; 2457273d9f13SBarry Smith B->assembled = PETSC_FALSE; 2458273d9f13SBarry Smith 2459273d9f13SBarry Smith B->insertmode = NOT_SET_VALUES; 24607adad957SLisandro Dalcin ierr = MPI_Comm_rank(((PetscObject)B)->comm,&b->rank);CHKERRQ(ierr); 24617adad957SLisandro Dalcin ierr = MPI_Comm_size(((PetscObject)B)->comm,&b->size);CHKERRQ(ierr); 2462273d9f13SBarry Smith 2463273d9f13SBarry Smith /* build local table of row and column ownerships */ 2464899cda47SBarry Smith ierr = PetscMalloc((b->size+1)*sizeof(PetscInt),&b->rangebs);CHKERRQ(ierr); 2465273d9f13SBarry Smith 2466273d9f13SBarry Smith /* build cache for off array entries formed */ 24677adad957SLisandro Dalcin ierr = MatStashCreate_Private(((PetscObject)B)->comm,1,&B->stash);CHKERRQ(ierr); 2468273d9f13SBarry Smith b->donotstash = PETSC_FALSE; 2469273d9f13SBarry Smith b->colmap = PETSC_NULL; 2470273d9f13SBarry Smith b->garray = PETSC_NULL; 2471273d9f13SBarry Smith b->roworiented = PETSC_TRUE; 2472273d9f13SBarry Smith 2473273d9f13SBarry Smith /* stuff used in block assembly */ 2474273d9f13SBarry Smith b->barray = 0; 2475273d9f13SBarry Smith 2476273d9f13SBarry Smith /* stuff used for matrix vector multiply */ 2477273d9f13SBarry Smith b->lvec = 0; 2478273d9f13SBarry Smith b->Mvctx = 0; 2479273d9f13SBarry Smith 2480273d9f13SBarry Smith /* stuff for MatGetRow() */ 2481273d9f13SBarry Smith b->rowindices = 0; 2482273d9f13SBarry Smith b->rowvalues = 0; 2483273d9f13SBarry Smith b->getrowactive = PETSC_FALSE; 2484273d9f13SBarry Smith 2485273d9f13SBarry Smith /* hash table stuff */ 2486273d9f13SBarry Smith b->ht = 0; 2487273d9f13SBarry Smith b->hd = 0; 2488273d9f13SBarry Smith b->ht_size = 0; 2489273d9f13SBarry Smith b->ht_flag = PETSC_FALSE; 2490273d9f13SBarry Smith b->ht_fact = 0; 2491273d9f13SBarry Smith b->ht_total_ct = 0; 2492273d9f13SBarry Smith b->ht_insert_ct = 0; 2493273d9f13SBarry Smith 24947adad957SLisandro Dalcin ierr = PetscOptionsBegin(((PetscObject)B)->comm,PETSC_NULL,"Options for loading MPIBAIJ matrix 1","Mat");CHKERRQ(ierr); 24958c07d4e3SBarry Smith ierr = PetscOptionsTruth("-mat_use_hash_table","Use hash table to save memory in constructing matrix","MatSetOption",PETSC_FALSE,&flg,PETSC_NULL);CHKERRQ(ierr); 2496273d9f13SBarry Smith if (flg) { 2497f6275e2eSBarry Smith PetscReal fact = 1.39; 24984e0d8c25SBarry Smith ierr = MatSetOption(B,MAT_USE_HASH_TABLE,PETSC_TRUE);CHKERRQ(ierr); 24998c07d4e3SBarry Smith ierr = PetscOptionsReal("-mat_use_hash_table","Use hash table factor","MatMPIBAIJSetHashTableFactor",fact,&fact,PETSC_NULL);CHKERRQ(ierr); 2500273d9f13SBarry Smith if (fact <= 1.0) fact = 1.39; 2501273d9f13SBarry Smith ierr = MatMPIBAIJSetHashTableFactor(B,fact);CHKERRQ(ierr); 25021e2582c4SBarry Smith ierr = PetscInfo1(B,"Hash table Factor used %5.2f\n",fact);CHKERRQ(ierr); 2503273d9f13SBarry Smith } 25048c07d4e3SBarry Smith ierr = PetscOptionsEnd();CHKERRQ(ierr); 25058c07d4e3SBarry Smith 250682094794SBarry Smith ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatConvert_mpibaij_mpiadj_C", 250782094794SBarry Smith "MatConvert_MPIBAIJ_MPIAdj", 250882094794SBarry Smith MatConvert_MPIBAIJ_MPIAdj);CHKERRQ(ierr); 2509273d9f13SBarry Smith ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatStoreValues_C", 2510273d9f13SBarry Smith "MatStoreValues_MPIBAIJ", 2511273d9f13SBarry Smith MatStoreValues_MPIBAIJ);CHKERRQ(ierr); 2512273d9f13SBarry Smith ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatRetrieveValues_C", 2513273d9f13SBarry Smith "MatRetrieveValues_MPIBAIJ", 2514273d9f13SBarry Smith MatRetrieveValues_MPIBAIJ);CHKERRQ(ierr); 2515273d9f13SBarry Smith ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetDiagonalBlock_C", 2516273d9f13SBarry Smith "MatGetDiagonalBlock_MPIBAIJ", 2517273d9f13SBarry Smith MatGetDiagonalBlock_MPIBAIJ);CHKERRQ(ierr); 2518a23d5eceSKris Buschelman ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatMPIBAIJSetPreallocation_C", 2519a23d5eceSKris Buschelman "MatMPIBAIJSetPreallocation_MPIBAIJ", 2520a23d5eceSKris Buschelman MatMPIBAIJSetPreallocation_MPIBAIJ);CHKERRQ(ierr); 2521aac34f13SBarry Smith ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatMPIBAIJSetPreallocationCSR_C", 252244ec7894SLisandro Dalcin "MatMPIBAIJSetPreallocationCSR_MPIBAIJ", 2523aac34f13SBarry Smith MatMPIBAIJSetPreallocationCSR_MPIBAIJ);CHKERRQ(ierr); 252492b32695SKris Buschelman ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatDiagonalScaleLocal_C", 252592b32695SKris Buschelman "MatDiagonalScaleLocal_MPIBAIJ", 252692b32695SKris Buschelman MatDiagonalScaleLocal_MPIBAIJ);CHKERRQ(ierr); 25275bf65638SKris Buschelman ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatSetHashTableFactor_C", 25285bf65638SKris Buschelman "MatSetHashTableFactor_MPIBAIJ", 25295bf65638SKris Buschelman MatSetHashTableFactor_MPIBAIJ);CHKERRQ(ierr); 253017667f90SBarry Smith ierr = PetscObjectChangeTypeName((PetscObject)B,MATMPIBAIJ);CHKERRQ(ierr); 2531273d9f13SBarry Smith PetscFunctionReturn(0); 2532273d9f13SBarry Smith } 2533273d9f13SBarry Smith EXTERN_C_END 2534273d9f13SBarry Smith 2535209238afSKris Buschelman /*MC 2536002d173eSKris Buschelman MATBAIJ - MATBAIJ = "baij" - A matrix type to be used for block sparse matrices. 2537209238afSKris Buschelman 2538209238afSKris Buschelman This matrix type is identical to MATSEQBAIJ when constructed with a single process communicator, 2539209238afSKris Buschelman and MATMPIBAIJ otherwise. 2540209238afSKris Buschelman 2541209238afSKris Buschelman Options Database Keys: 2542209238afSKris Buschelman . -mat_type baij - sets the matrix type to "baij" during a call to MatSetFromOptions() 2543209238afSKris Buschelman 2544209238afSKris Buschelman Level: beginner 2545209238afSKris Buschelman 2546aac34f13SBarry Smith .seealso: MatCreateMPIBAIJ(),MATSEQBAIJ,MATMPIBAIJ, MatMPIBAIJSetPreallocation(), MatMPIBAIJSetPreallocationCSR() 2547209238afSKris Buschelman M*/ 2548209238afSKris Buschelman 2549209238afSKris Buschelman EXTERN_C_BEGIN 2550209238afSKris Buschelman #undef __FUNCT__ 2551209238afSKris Buschelman #define __FUNCT__ "MatCreate_BAIJ" 2552be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreate_BAIJ(Mat A) 2553dfbe8321SBarry Smith { 25546849ba73SBarry Smith PetscErrorCode ierr; 2555b24ad042SBarry Smith PetscMPIInt size; 2556209238afSKris Buschelman 2557209238afSKris Buschelman PetscFunctionBegin; 25587adad957SLisandro Dalcin ierr = MPI_Comm_size(((PetscObject)A)->comm,&size);CHKERRQ(ierr); 2559209238afSKris Buschelman if (size == 1) { 2560209238afSKris Buschelman ierr = MatSetType(A,MATSEQBAIJ);CHKERRQ(ierr); 2561209238afSKris Buschelman } else { 2562209238afSKris Buschelman ierr = MatSetType(A,MATMPIBAIJ);CHKERRQ(ierr); 2563209238afSKris Buschelman } 2564209238afSKris Buschelman PetscFunctionReturn(0); 2565209238afSKris Buschelman } 2566209238afSKris Buschelman EXTERN_C_END 2567209238afSKris Buschelman 25684a2ae208SSatish Balay #undef __FUNCT__ 25694a2ae208SSatish Balay #define __FUNCT__ "MatMPIBAIJSetPreallocation" 2570273d9f13SBarry Smith /*@C 2571aac34f13SBarry Smith MatMPIBAIJSetPreallocation - Allocates memory for a sparse parallel matrix in block AIJ format 2572273d9f13SBarry Smith (block compressed row). For good matrix assembly performance 2573273d9f13SBarry Smith the user should preallocate the matrix storage by setting the parameters 2574273d9f13SBarry Smith d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 2575273d9f13SBarry Smith performance can be increased by more than a factor of 50. 2576273d9f13SBarry Smith 2577273d9f13SBarry Smith Collective on Mat 2578273d9f13SBarry Smith 2579273d9f13SBarry Smith Input Parameters: 2580273d9f13SBarry Smith + A - the matrix 2581273d9f13SBarry Smith . bs - size of blockk 2582273d9f13SBarry Smith . d_nz - number of block nonzeros per block row in diagonal portion of local 2583273d9f13SBarry Smith submatrix (same for all local rows) 2584273d9f13SBarry Smith . d_nnz - array containing the number of block nonzeros in the various block rows 2585273d9f13SBarry Smith of the in diagonal portion of the local (possibly different for each block 2586273d9f13SBarry Smith row) or PETSC_NULL. You must leave room for the diagonal entry even if it is zero. 2587273d9f13SBarry Smith . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 2588273d9f13SBarry Smith submatrix (same for all local rows). 2589273d9f13SBarry Smith - o_nnz - array containing the number of nonzeros in the various block rows of the 2590273d9f13SBarry Smith off-diagonal portion of the local submatrix (possibly different for 2591273d9f13SBarry Smith each block row) or PETSC_NULL. 2592273d9f13SBarry Smith 259349a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 2594273d9f13SBarry Smith 2595273d9f13SBarry Smith Options Database Keys: 25968c07d4e3SBarry Smith + -mat_block_size - size of the blocks to use 25978c07d4e3SBarry Smith - -mat_use_hash_table <fact> 2598273d9f13SBarry Smith 2599273d9f13SBarry Smith Notes: 2600273d9f13SBarry Smith If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one processor 2601273d9f13SBarry Smith than it must be used on all processors that share the object for that argument. 2602273d9f13SBarry Smith 2603273d9f13SBarry Smith Storage Information: 2604273d9f13SBarry Smith For a square global matrix we define each processor's diagonal portion 2605273d9f13SBarry Smith to be its local rows and the corresponding columns (a square submatrix); 2606273d9f13SBarry Smith each processor's off-diagonal portion encompasses the remainder of the 2607273d9f13SBarry Smith local matrix (a rectangular submatrix). 2608273d9f13SBarry Smith 2609273d9f13SBarry Smith The user can specify preallocated storage for the diagonal part of 2610273d9f13SBarry Smith the local submatrix with either d_nz or d_nnz (not both). Set 2611273d9f13SBarry Smith d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic 2612273d9f13SBarry Smith memory allocation. Likewise, specify preallocated storage for the 2613273d9f13SBarry Smith off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 2614273d9f13SBarry Smith 2615273d9f13SBarry Smith Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 2616273d9f13SBarry Smith the figure below we depict these three local rows and all columns (0-11). 2617273d9f13SBarry Smith 2618273d9f13SBarry Smith .vb 2619273d9f13SBarry Smith 0 1 2 3 4 5 6 7 8 9 10 11 2620273d9f13SBarry Smith ------------------- 2621273d9f13SBarry Smith row 3 | o o o d d d o o o o o o 2622273d9f13SBarry Smith row 4 | o o o d d d o o o o o o 2623273d9f13SBarry Smith row 5 | o o o d d d o o o o o o 2624273d9f13SBarry Smith ------------------- 2625273d9f13SBarry Smith .ve 2626273d9f13SBarry Smith 2627273d9f13SBarry Smith Thus, any entries in the d locations are stored in the d (diagonal) 2628273d9f13SBarry Smith submatrix, and any entries in the o locations are stored in the 2629273d9f13SBarry Smith o (off-diagonal) submatrix. Note that the d and the o submatrices are 2630273d9f13SBarry Smith stored simply in the MATSEQBAIJ format for compressed row storage. 2631273d9f13SBarry Smith 2632273d9f13SBarry Smith Now d_nz should indicate the number of block nonzeros per row in the d matrix, 2633273d9f13SBarry Smith and o_nz should indicate the number of block nonzeros per row in the o matrix. 2634273d9f13SBarry Smith In general, for PDE problems in which most nonzeros are near the diagonal, 2635273d9f13SBarry Smith one expects d_nz >> o_nz. For large problems you MUST preallocate memory 2636273d9f13SBarry Smith or you will get TERRIBLE performance; see the users' manual chapter on 2637273d9f13SBarry Smith matrices. 2638273d9f13SBarry Smith 2639aa95bbe8SBarry Smith You can call MatGetInfo() to get information on how effective the preallocation was; 2640aa95bbe8SBarry Smith for example the fields mallocs,nz_allocated,nz_used,nz_unneeded; 2641aa95bbe8SBarry Smith You can also run with the option -info and look for messages with the string 2642aa95bbe8SBarry Smith malloc in them to see if additional memory allocation was needed. 2643aa95bbe8SBarry Smith 2644273d9f13SBarry Smith Level: intermediate 2645273d9f13SBarry Smith 2646273d9f13SBarry Smith .keywords: matrix, block, aij, compressed row, sparse, parallel 2647273d9f13SBarry Smith 2648aac34f13SBarry Smith .seealso: MatCreate(), MatCreateSeqBAIJ(), MatSetValues(), MatCreateMPIBAIJ(), MatMPIBAIJSetPreallocationCSR() 2649273d9f13SBarry Smith @*/ 2650be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPIBAIJSetPreallocation(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[]) 2651273d9f13SBarry Smith { 2652b24ad042SBarry Smith PetscErrorCode ierr,(*f)(Mat,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[]); 2653273d9f13SBarry Smith 2654273d9f13SBarry Smith PetscFunctionBegin; 2655a23d5eceSKris Buschelman ierr = PetscObjectQueryFunction((PetscObject)B,"MatMPIBAIJSetPreallocation_C",(void (**)(void))&f);CHKERRQ(ierr); 2656a23d5eceSKris Buschelman if (f) { 2657a23d5eceSKris Buschelman ierr = (*f)(B,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr); 2658273d9f13SBarry Smith } 2659273d9f13SBarry Smith PetscFunctionReturn(0); 2660273d9f13SBarry Smith } 2661273d9f13SBarry Smith 26624a2ae208SSatish Balay #undef __FUNCT__ 26634a2ae208SSatish Balay #define __FUNCT__ "MatCreateMPIBAIJ" 266479bdfe76SSatish Balay /*@C 266579bdfe76SSatish Balay MatCreateMPIBAIJ - Creates a sparse parallel matrix in block AIJ format 266679bdfe76SSatish Balay (block compressed row). For good matrix assembly performance 266779bdfe76SSatish Balay the user should preallocate the matrix storage by setting the parameters 266879bdfe76SSatish Balay d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 266979bdfe76SSatish Balay performance can be increased by more than a factor of 50. 267079bdfe76SSatish Balay 2671db81eaa0SLois Curfman McInnes Collective on MPI_Comm 2672db81eaa0SLois Curfman McInnes 267379bdfe76SSatish Balay Input Parameters: 2674db81eaa0SLois Curfman McInnes + comm - MPI communicator 267579bdfe76SSatish Balay . bs - size of blockk 267679bdfe76SSatish Balay . m - number of local rows (or PETSC_DECIDE to have calculated if M is given) 267792e8d321SLois Curfman McInnes This value should be the same as the local size used in creating the 267892e8d321SLois Curfman McInnes y vector for the matrix-vector product y = Ax. 267992e8d321SLois Curfman McInnes . n - number of local columns (or PETSC_DECIDE to have calculated if N is given) 268092e8d321SLois Curfman McInnes This value should be the same as the local size used in creating the 268192e8d321SLois Curfman McInnes x vector for the matrix-vector product y = Ax. 2682be79a94dSBarry Smith . M - number of global rows (or PETSC_DETERMINE to have calculated if m is given) 2683be79a94dSBarry Smith . N - number of global columns (or PETSC_DETERMINE to have calculated if n is given) 268447a75d0bSBarry Smith . d_nz - number of nonzero blocks per block row in diagonal portion of local 268579bdfe76SSatish Balay submatrix (same for all local rows) 268647a75d0bSBarry Smith . d_nnz - array containing the number of nonzero blocks in the various block rows 268792e8d321SLois Curfman McInnes of the in diagonal portion of the local (possibly different for each block 2688db81eaa0SLois Curfman McInnes row) or PETSC_NULL. You must leave room for the diagonal entry even if it is zero. 268947a75d0bSBarry Smith . o_nz - number of nonzero blocks per block row in the off-diagonal portion of local 269079bdfe76SSatish Balay submatrix (same for all local rows). 269147a75d0bSBarry Smith - o_nnz - array containing the number of nonzero blocks in the various block rows of the 269292e8d321SLois Curfman McInnes off-diagonal portion of the local submatrix (possibly different for 269392e8d321SLois Curfman McInnes each block row) or PETSC_NULL. 269479bdfe76SSatish Balay 269579bdfe76SSatish Balay Output Parameter: 269679bdfe76SSatish Balay . A - the matrix 269779bdfe76SSatish Balay 2698db81eaa0SLois Curfman McInnes Options Database Keys: 26998c07d4e3SBarry Smith + -mat_block_size - size of the blocks to use 27008c07d4e3SBarry Smith - -mat_use_hash_table <fact> 27013ffaccefSLois Curfman McInnes 2702175b88e8SBarry Smith It is recommended that one use the MatCreate(), MatSetType() and/or MatSetFromOptions(), 2703ae1d86c5SBarry Smith MatXXXXSetPreallocation() paradgm instead of this routine directly. 2704175b88e8SBarry Smith [MatXXXXSetPreallocation() is, for example, MatSeqAIJSetPreallocation] 2705175b88e8SBarry Smith 2706b259b22eSLois Curfman McInnes Notes: 270749a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 270849a6f317SBarry Smith 270947a75d0bSBarry Smith A nonzero block is any block that as 1 or more nonzeros in it 271047a75d0bSBarry Smith 271179bdfe76SSatish Balay The user MUST specify either the local or global matrix dimensions 271279bdfe76SSatish Balay (possibly both). 271379bdfe76SSatish Balay 2714be79a94dSBarry Smith If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one processor 2715be79a94dSBarry Smith than it must be used on all processors that share the object for that argument. 2716be79a94dSBarry Smith 271779bdfe76SSatish Balay Storage Information: 271879bdfe76SSatish Balay For a square global matrix we define each processor's diagonal portion 271979bdfe76SSatish Balay to be its local rows and the corresponding columns (a square submatrix); 272079bdfe76SSatish Balay each processor's off-diagonal portion encompasses the remainder of the 272179bdfe76SSatish Balay local matrix (a rectangular submatrix). 272279bdfe76SSatish Balay 272379bdfe76SSatish Balay The user can specify preallocated storage for the diagonal part of 272479bdfe76SSatish Balay the local submatrix with either d_nz or d_nnz (not both). Set 272579bdfe76SSatish Balay d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic 272679bdfe76SSatish Balay memory allocation. Likewise, specify preallocated storage for the 272779bdfe76SSatish Balay off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 272879bdfe76SSatish Balay 272979bdfe76SSatish Balay Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 273079bdfe76SSatish Balay the figure below we depict these three local rows and all columns (0-11). 273179bdfe76SSatish Balay 2732db81eaa0SLois Curfman McInnes .vb 2733db81eaa0SLois Curfman McInnes 0 1 2 3 4 5 6 7 8 9 10 11 2734db81eaa0SLois Curfman McInnes ------------------- 2735db81eaa0SLois Curfman McInnes row 3 | o o o d d d o o o o o o 2736db81eaa0SLois Curfman McInnes row 4 | o o o d d d o o o o o o 2737db81eaa0SLois Curfman McInnes row 5 | o o o d d d o o o o o o 2738db81eaa0SLois Curfman McInnes ------------------- 2739db81eaa0SLois Curfman McInnes .ve 274079bdfe76SSatish Balay 274179bdfe76SSatish Balay Thus, any entries in the d locations are stored in the d (diagonal) 274279bdfe76SSatish Balay submatrix, and any entries in the o locations are stored in the 274379bdfe76SSatish Balay o (off-diagonal) submatrix. Note that the d and the o submatrices are 274457b952d6SSatish Balay stored simply in the MATSEQBAIJ format for compressed row storage. 274579bdfe76SSatish Balay 2746d64ed03dSBarry Smith Now d_nz should indicate the number of block nonzeros per row in the d matrix, 2747d64ed03dSBarry Smith and o_nz should indicate the number of block nonzeros per row in the o matrix. 274879bdfe76SSatish Balay In general, for PDE problems in which most nonzeros are near the diagonal, 274992e8d321SLois Curfman McInnes one expects d_nz >> o_nz. For large problems you MUST preallocate memory 275092e8d321SLois Curfman McInnes or you will get TERRIBLE performance; see the users' manual chapter on 27516da5968aSLois Curfman McInnes matrices. 275279bdfe76SSatish Balay 2753027ccd11SLois Curfman McInnes Level: intermediate 2754027ccd11SLois Curfman McInnes 275592e8d321SLois Curfman McInnes .keywords: matrix, block, aij, compressed row, sparse, parallel 275679bdfe76SSatish Balay 2757aac34f13SBarry Smith .seealso: MatCreate(), MatCreateSeqBAIJ(), MatSetValues(), MatCreateMPIBAIJ(), MatMPIBAIJSetPreallocation(), MatMPIBAIJSetPreallocationCSR() 275879bdfe76SSatish Balay @*/ 2759be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreateMPIBAIJ(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[],Mat *A) 276079bdfe76SSatish Balay { 27616849ba73SBarry Smith PetscErrorCode ierr; 2762b24ad042SBarry Smith PetscMPIInt size; 276379bdfe76SSatish Balay 2764d64ed03dSBarry Smith PetscFunctionBegin; 2765f69a0ea3SMatthew Knepley ierr = MatCreate(comm,A);CHKERRQ(ierr); 2766f69a0ea3SMatthew Knepley ierr = MatSetSizes(*A,m,n,M,N);CHKERRQ(ierr); 2767d132466eSBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 2768273d9f13SBarry Smith if (size > 1) { 2769273d9f13SBarry Smith ierr = MatSetType(*A,MATMPIBAIJ);CHKERRQ(ierr); 2770273d9f13SBarry Smith ierr = MatMPIBAIJSetPreallocation(*A,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr); 2771273d9f13SBarry Smith } else { 2772273d9f13SBarry Smith ierr = MatSetType(*A,MATSEQBAIJ);CHKERRQ(ierr); 2773273d9f13SBarry Smith ierr = MatSeqBAIJSetPreallocation(*A,bs,d_nz,d_nnz);CHKERRQ(ierr); 27743914022bSBarry Smith } 27753a40ed3dSBarry Smith PetscFunctionReturn(0); 277679bdfe76SSatish Balay } 2777026e39d0SSatish Balay 27784a2ae208SSatish Balay #undef __FUNCT__ 27794a2ae208SSatish Balay #define __FUNCT__ "MatDuplicate_MPIBAIJ" 27806849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIBAIJ(Mat matin,MatDuplicateOption cpvalues,Mat *newmat) 27810ac07820SSatish Balay { 27820ac07820SSatish Balay Mat mat; 27830ac07820SSatish Balay Mat_MPIBAIJ *a,*oldmat = (Mat_MPIBAIJ*)matin->data; 2784dfbe8321SBarry Smith PetscErrorCode ierr; 2785b24ad042SBarry Smith PetscInt len=0; 27860ac07820SSatish Balay 2787d64ed03dSBarry Smith PetscFunctionBegin; 27880ac07820SSatish Balay *newmat = 0; 27897adad957SLisandro Dalcin ierr = MatCreate(((PetscObject)matin)->comm,&mat);CHKERRQ(ierr); 2790d0f46423SBarry Smith ierr = MatSetSizes(mat,matin->rmap->n,matin->cmap->n,matin->rmap->N,matin->cmap->N);CHKERRQ(ierr); 27917adad957SLisandro Dalcin ierr = MatSetType(mat,((PetscObject)matin)->type_name);CHKERRQ(ierr); 27921d5dac46SHong Zhang ierr = PetscMemcpy(mat->ops,matin->ops,sizeof(struct _MatOps));CHKERRQ(ierr); 27937fff6886SHong Zhang 27944beb1cfeSHong Zhang mat->factor = matin->factor; 2795273d9f13SBarry Smith mat->preallocated = PETSC_TRUE; 27960ac07820SSatish Balay mat->assembled = PETSC_TRUE; 27977fff6886SHong Zhang mat->insertmode = NOT_SET_VALUES; 27987fff6886SHong Zhang 2799273d9f13SBarry Smith a = (Mat_MPIBAIJ*)mat->data; 2800d0f46423SBarry Smith mat->rmap->bs = matin->rmap->bs; 28010ac07820SSatish Balay a->bs2 = oldmat->bs2; 28020ac07820SSatish Balay a->mbs = oldmat->mbs; 28030ac07820SSatish Balay a->nbs = oldmat->nbs; 28040ac07820SSatish Balay a->Mbs = oldmat->Mbs; 28050ac07820SSatish Balay a->Nbs = oldmat->Nbs; 28060ac07820SSatish Balay 2807d0f46423SBarry Smith ierr = PetscMapCopy(((PetscObject)matin)->comm,matin->rmap,mat->rmap);CHKERRQ(ierr); 2808d0f46423SBarry Smith ierr = PetscMapCopy(((PetscObject)matin)->comm,matin->cmap,mat->cmap);CHKERRQ(ierr); 2809899cda47SBarry Smith 28100ac07820SSatish Balay a->size = oldmat->size; 28110ac07820SSatish Balay a->rank = oldmat->rank; 2812aef5e8e0SSatish Balay a->donotstash = oldmat->donotstash; 2813aef5e8e0SSatish Balay a->roworiented = oldmat->roworiented; 2814aef5e8e0SSatish Balay a->rowindices = 0; 28150ac07820SSatish Balay a->rowvalues = 0; 28160ac07820SSatish Balay a->getrowactive = PETSC_FALSE; 281730793edcSSatish Balay a->barray = 0; 2818899cda47SBarry Smith a->rstartbs = oldmat->rstartbs; 2819899cda47SBarry Smith a->rendbs = oldmat->rendbs; 2820899cda47SBarry Smith a->cstartbs = oldmat->cstartbs; 2821899cda47SBarry Smith a->cendbs = oldmat->cendbs; 28220ac07820SSatish Balay 2823133cdb44SSatish Balay /* hash table stuff */ 2824133cdb44SSatish Balay a->ht = 0; 2825133cdb44SSatish Balay a->hd = 0; 2826133cdb44SSatish Balay a->ht_size = 0; 2827133cdb44SSatish Balay a->ht_flag = oldmat->ht_flag; 282825fdafccSSatish Balay a->ht_fact = oldmat->ht_fact; 2829133cdb44SSatish Balay a->ht_total_ct = 0; 2830133cdb44SSatish Balay a->ht_insert_ct = 0; 2831133cdb44SSatish Balay 2832899cda47SBarry Smith ierr = PetscMemcpy(a->rangebs,oldmat->rangebs,(a->size+1)*sizeof(PetscInt));CHKERRQ(ierr); 28337adad957SLisandro Dalcin ierr = MatStashCreate_Private(((PetscObject)matin)->comm,1,&mat->stash);CHKERRQ(ierr); 2834d0f46423SBarry Smith ierr = MatStashCreate_Private(((PetscObject)matin)->comm,matin->rmap->bs,&mat->bstash);CHKERRQ(ierr); 28350ac07820SSatish Balay if (oldmat->colmap) { 2836aa482453SBarry Smith #if defined (PETSC_USE_CTABLE) 28370f5bd95cSBarry Smith ierr = PetscTableCreateCopy(oldmat->colmap,&a->colmap);CHKERRQ(ierr); 283848e59246SSatish Balay #else 2839b24ad042SBarry Smith ierr = PetscMalloc((a->Nbs)*sizeof(PetscInt),&a->colmap);CHKERRQ(ierr); 284052e6d16bSBarry Smith ierr = PetscLogObjectMemory(mat,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr); 2841b24ad042SBarry Smith ierr = PetscMemcpy(a->colmap,oldmat->colmap,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr); 284248e59246SSatish Balay #endif 28430ac07820SSatish Balay } else a->colmap = 0; 28444beb1cfeSHong Zhang 28450ac07820SSatish Balay if (oldmat->garray && (len = ((Mat_SeqBAIJ*)(oldmat->B->data))->nbs)) { 2846b24ad042SBarry Smith ierr = PetscMalloc(len*sizeof(PetscInt),&a->garray);CHKERRQ(ierr); 284752e6d16bSBarry Smith ierr = PetscLogObjectMemory(mat,len*sizeof(PetscInt));CHKERRQ(ierr); 2848b24ad042SBarry Smith ierr = PetscMemcpy(a->garray,oldmat->garray,len*sizeof(PetscInt));CHKERRQ(ierr); 28490ac07820SSatish Balay } else a->garray = 0; 28500ac07820SSatish Balay 28510ac07820SSatish Balay ierr = VecDuplicate(oldmat->lvec,&a->lvec);CHKERRQ(ierr); 285252e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->lvec);CHKERRQ(ierr); 28530ac07820SSatish Balay ierr = VecScatterCopy(oldmat->Mvctx,&a->Mvctx);CHKERRQ(ierr); 285452e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->Mvctx);CHKERRQ(ierr); 28557fff6886SHong Zhang 28562e8a6d31SBarry Smith ierr = MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr); 285752e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->A);CHKERRQ(ierr); 28582e8a6d31SBarry Smith ierr = MatDuplicate(oldmat->B,cpvalues,&a->B);CHKERRQ(ierr); 285952e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->B);CHKERRQ(ierr); 28607adad957SLisandro Dalcin ierr = PetscFListDuplicate(((PetscObject)matin)->qlist,&((PetscObject)mat)->qlist);CHKERRQ(ierr); 28610ac07820SSatish Balay *newmat = mat; 28624beb1cfeSHong Zhang 28633a40ed3dSBarry Smith PetscFunctionReturn(0); 28640ac07820SSatish Balay } 286557b952d6SSatish Balay 2866e090d566SSatish Balay #include "petscsys.h" 286757b952d6SSatish Balay 28684a2ae208SSatish Balay #undef __FUNCT__ 28694a2ae208SSatish Balay #define __FUNCT__ "MatLoad_MPIBAIJ" 2870a313700dSBarry Smith PetscErrorCode MatLoad_MPIBAIJ(PetscViewer viewer, const MatType type,Mat *newmat) 287157b952d6SSatish Balay { 287257b952d6SSatish Balay Mat A; 28736849ba73SBarry Smith PetscErrorCode ierr; 2874b24ad042SBarry Smith int fd; 2875b24ad042SBarry Smith PetscInt i,nz,j,rstart,rend; 287687828ca2SBarry Smith PetscScalar *vals,*buf; 287757b952d6SSatish Balay MPI_Comm comm = ((PetscObject)viewer)->comm; 287857b952d6SSatish Balay MPI_Status status; 2879b24ad042SBarry Smith PetscMPIInt rank,size,maxnz; 2880b24ad042SBarry Smith PetscInt header[4],*rowlengths = 0,M,N,m,*rowners,*cols; 2881910ba992SMatthew Knepley PetscInt *locrowlens = PETSC_NULL,*procsnz = PETSC_NULL,*browners = PETSC_NULL; 2882167e7480SBarry Smith PetscInt jj,*mycols,*ibuf,bs=1,Mbs,mbs,extra_rows,mmax; 2883dc231df0SBarry Smith PetscMPIInt tag = ((PetscObject)viewer)->tag; 2884910ba992SMatthew Knepley PetscInt *dlens = PETSC_NULL,*odlens = PETSC_NULL,*mask = PETSC_NULL,*masked1 = PETSC_NULL,*masked2 = PETSC_NULL,rowcount,odcount; 2885dc231df0SBarry Smith PetscInt dcount,kmax,k,nzcount,tmp,mend; 288657b952d6SSatish Balay 2887d64ed03dSBarry Smith PetscFunctionBegin; 288877925062SSatish Balay ierr = PetscOptionsBegin(comm,PETSC_NULL,"Options for loading MPIBAIJ matrix 2","Mat");CHKERRQ(ierr); 28898c07d4e3SBarry Smith ierr = PetscOptionsInt("-matload_block_size","Set the blocksize used to store the matrix","MatLoad",bs,&bs,PETSC_NULL);CHKERRQ(ierr); 28908c07d4e3SBarry Smith ierr = PetscOptionsEnd();CHKERRQ(ierr); 289157b952d6SSatish Balay 2892d132466eSBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 2893d132466eSBarry Smith ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 289457b952d6SSatish Balay if (!rank) { 2895b0a32e0cSBarry Smith ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr); 2896e5638eb3SBarry Smith ierr = PetscBinaryRead(fd,(char *)header,4,PETSC_INT);CHKERRQ(ierr); 2897552e946dSBarry Smith if (header[0] != MAT_FILE_COOKIE) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"not matrix object"); 28986c5fab8fSBarry Smith } 2899d64ed03dSBarry Smith 2900b24ad042SBarry Smith ierr = MPI_Bcast(header+1,3,MPIU_INT,0,comm);CHKERRQ(ierr); 290157b952d6SSatish Balay M = header[1]; N = header[2]; 290257b952d6SSatish Balay 290329bbc08cSBarry Smith if (M != N) SETERRQ(PETSC_ERR_SUP,"Can only do square matrices"); 290457b952d6SSatish Balay 290557b952d6SSatish Balay /* 290657b952d6SSatish Balay This code adds extra rows to make sure the number of rows is 290757b952d6SSatish Balay divisible by the blocksize 290857b952d6SSatish Balay */ 290957b952d6SSatish Balay Mbs = M/bs; 2910dc231df0SBarry Smith extra_rows = bs - M + bs*Mbs; 291157b952d6SSatish Balay if (extra_rows == bs) extra_rows = 0; 291257b952d6SSatish Balay else Mbs++; 291357b952d6SSatish Balay if (extra_rows && !rank) { 29141e2582c4SBarry Smith ierr = PetscInfo(viewer,"Padding loaded matrix to match blocksize\n");CHKERRQ(ierr); 291557b952d6SSatish Balay } 2916537820f0SBarry Smith 291757b952d6SSatish Balay /* determine ownership of all rows */ 291857b952d6SSatish Balay mbs = Mbs/size + ((Mbs % size) > rank); 291957b952d6SSatish Balay m = mbs*bs; 2920dc231df0SBarry Smith ierr = PetscMalloc2(size+1,PetscInt,&rowners,size+1,PetscInt,&browners);CHKERRQ(ierr); 2921b24ad042SBarry Smith ierr = MPI_Allgather(&mbs,1,MPIU_INT,rowners+1,1,MPIU_INT,comm);CHKERRQ(ierr); 2922167e7480SBarry Smith 2923167e7480SBarry Smith /* process 0 needs enough room for process with most rows */ 2924167e7480SBarry Smith if (!rank) { 2925167e7480SBarry Smith mmax = rowners[1]; 2926167e7480SBarry Smith for (i=2; i<size; i++) { 2927167e7480SBarry Smith mmax = PetscMax(mmax,rowners[i]); 2928167e7480SBarry Smith } 2929ca02efcfSSatish Balay mmax*=bs; 2930167e7480SBarry Smith } else mmax = m; 2931167e7480SBarry Smith 293257b952d6SSatish Balay rowners[0] = 0; 2933cee3aa6bSSatish Balay for (i=2; i<=size; i++) rowners[i] += rowners[i-1]; 2934cee3aa6bSSatish Balay for (i=0; i<=size; i++) browners[i] = rowners[i]*bs; 293557b952d6SSatish Balay rstart = rowners[rank]; 293657b952d6SSatish Balay rend = rowners[rank+1]; 293757b952d6SSatish Balay 293857b952d6SSatish Balay /* distribute row lengths to all processors */ 293919c38ff2SBarry Smith ierr = PetscMalloc((mmax+1)*sizeof(PetscInt),&locrowlens);CHKERRQ(ierr); 294057b952d6SSatish Balay if (!rank) { 2941dc231df0SBarry Smith mend = m; 2942dc231df0SBarry Smith if (size == 1) mend = mend - extra_rows; 2943dc231df0SBarry Smith ierr = PetscBinaryRead(fd,locrowlens,mend,PETSC_INT);CHKERRQ(ierr); 2944dc231df0SBarry Smith for (j=mend; j<m; j++) locrowlens[j] = 1; 2945dc231df0SBarry Smith ierr = PetscMalloc(m*sizeof(PetscInt),&rowlengths);CHKERRQ(ierr); 2946b24ad042SBarry Smith ierr = PetscMalloc(size*sizeof(PetscInt),&procsnz);CHKERRQ(ierr); 2947b24ad042SBarry Smith ierr = PetscMemzero(procsnz,size*sizeof(PetscInt));CHKERRQ(ierr); 2948dc231df0SBarry Smith for (j=0; j<m; j++) { 2949dc231df0SBarry Smith procsnz[0] += locrowlens[j]; 2950dc231df0SBarry Smith } 2951dc231df0SBarry Smith for (i=1; i<size; i++) { 2952dc231df0SBarry Smith mend = browners[i+1] - browners[i]; 2953dc231df0SBarry Smith if (i == size-1) mend = mend - extra_rows; 2954dc231df0SBarry Smith ierr = PetscBinaryRead(fd,rowlengths,mend,PETSC_INT);CHKERRQ(ierr); 2955dc231df0SBarry Smith for (j=mend; j<browners[i+1] - browners[i]; j++) rowlengths[j] = 1; 2956dc231df0SBarry Smith /* calculate the number of nonzeros on each processor */ 2957dc231df0SBarry Smith for (j=0; j<browners[i+1]-browners[i]; j++) { 295857b952d6SSatish Balay procsnz[i] += rowlengths[j]; 295957b952d6SSatish Balay } 2960dc231df0SBarry Smith ierr = MPI_Send(rowlengths,browners[i+1]-browners[i],MPIU_INT,i,tag,comm);CHKERRQ(ierr); 296157b952d6SSatish Balay } 2962606d414cSSatish Balay ierr = PetscFree(rowlengths);CHKERRQ(ierr); 2963dc231df0SBarry Smith } else { 2964dc231df0SBarry Smith ierr = MPI_Recv(locrowlens,m,MPIU_INT,0,tag,comm,&status);CHKERRQ(ierr); 2965dc231df0SBarry Smith } 296657b952d6SSatish Balay 2967dc231df0SBarry Smith if (!rank) { 296857b952d6SSatish Balay /* determine max buffer needed and allocate it */ 29698a8e0b3aSBarry Smith maxnz = procsnz[0]; 2970cdc0ba36SBarry Smith for (i=1; i<size; i++) { 297157b952d6SSatish Balay maxnz = PetscMax(maxnz,procsnz[i]); 297257b952d6SSatish Balay } 2973b24ad042SBarry Smith ierr = PetscMalloc(maxnz*sizeof(PetscInt),&cols);CHKERRQ(ierr); 297457b952d6SSatish Balay 297557b952d6SSatish Balay /* read in my part of the matrix column indices */ 297657b952d6SSatish Balay nz = procsnz[0]; 297719c38ff2SBarry Smith ierr = PetscMalloc((nz+1)*sizeof(PetscInt),&ibuf);CHKERRQ(ierr); 297857b952d6SSatish Balay mycols = ibuf; 2979cee3aa6bSSatish Balay if (size == 1) nz -= extra_rows; 2980e5638eb3SBarry Smith ierr = PetscBinaryRead(fd,mycols,nz,PETSC_INT);CHKERRQ(ierr); 2981cee3aa6bSSatish Balay if (size == 1) for (i=0; i< extra_rows; i++) { mycols[nz+i] = M+i; } 2982cee3aa6bSSatish Balay 298357b952d6SSatish Balay /* read in every ones (except the last) and ship off */ 298457b952d6SSatish Balay for (i=1; i<size-1; i++) { 298557b952d6SSatish Balay nz = procsnz[i]; 2986e5638eb3SBarry Smith ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr); 2987b24ad042SBarry Smith ierr = MPI_Send(cols,nz,MPIU_INT,i,tag,comm);CHKERRQ(ierr); 298857b952d6SSatish Balay } 298957b952d6SSatish Balay /* read in the stuff for the last proc */ 299057b952d6SSatish Balay if (size != 1) { 299157b952d6SSatish Balay nz = procsnz[size-1] - extra_rows; /* the extra rows are not on the disk */ 2992e5638eb3SBarry Smith ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr); 299357b952d6SSatish Balay for (i=0; i<extra_rows; i++) cols[nz+i] = M+i; 2994b24ad042SBarry Smith ierr = MPI_Send(cols,nz+extra_rows,MPIU_INT,size-1,tag,comm);CHKERRQ(ierr); 299557b952d6SSatish Balay } 2996606d414cSSatish Balay ierr = PetscFree(cols);CHKERRQ(ierr); 2997d64ed03dSBarry Smith } else { 299857b952d6SSatish Balay /* determine buffer space needed for message */ 299957b952d6SSatish Balay nz = 0; 300057b952d6SSatish Balay for (i=0; i<m; i++) { 300157b952d6SSatish Balay nz += locrowlens[i]; 300257b952d6SSatish Balay } 300319c38ff2SBarry Smith ierr = PetscMalloc((nz+1)*sizeof(PetscInt),&ibuf);CHKERRQ(ierr); 300457b952d6SSatish Balay mycols = ibuf; 300557b952d6SSatish Balay /* receive message of column indices*/ 3006b24ad042SBarry Smith ierr = MPI_Recv(mycols,nz,MPIU_INT,0,tag,comm,&status);CHKERRQ(ierr); 3007b24ad042SBarry Smith ierr = MPI_Get_count(&status,MPIU_INT,&maxnz);CHKERRQ(ierr); 300829bbc08cSBarry Smith if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 300957b952d6SSatish Balay } 301057b952d6SSatish Balay 301157b952d6SSatish Balay /* loop over local rows, determining number of off diagonal entries */ 3012dc231df0SBarry Smith ierr = PetscMalloc2(rend-rstart,PetscInt,&dlens,rend-rstart,PetscInt,&odlens);CHKERRQ(ierr); 3013dc231df0SBarry Smith ierr = PetscMalloc3(Mbs,PetscInt,&mask,Mbs,PetscInt,&masked1,Mbs,PetscInt,&masked2);CHKERRQ(ierr); 3014dc231df0SBarry Smith ierr = PetscMemzero(mask,Mbs*sizeof(PetscInt));CHKERRQ(ierr); 3015dc231df0SBarry Smith ierr = PetscMemzero(masked1,Mbs*sizeof(PetscInt));CHKERRQ(ierr); 3016dc231df0SBarry Smith ierr = PetscMemzero(masked2,Mbs*sizeof(PetscInt));CHKERRQ(ierr); 301757b952d6SSatish Balay rowcount = 0; nzcount = 0; 301857b952d6SSatish Balay for (i=0; i<mbs; i++) { 301957b952d6SSatish Balay dcount = 0; 302057b952d6SSatish Balay odcount = 0; 302157b952d6SSatish Balay for (j=0; j<bs; j++) { 302257b952d6SSatish Balay kmax = locrowlens[rowcount]; 302357b952d6SSatish Balay for (k=0; k<kmax; k++) { 302457b952d6SSatish Balay tmp = mycols[nzcount++]/bs; 302557b952d6SSatish Balay if (!mask[tmp]) { 302657b952d6SSatish Balay mask[tmp] = 1; 302757b952d6SSatish Balay if (tmp < rstart || tmp >= rend) masked2[odcount++] = tmp; 302857b952d6SSatish Balay else masked1[dcount++] = tmp; 302957b952d6SSatish Balay } 303057b952d6SSatish Balay } 303157b952d6SSatish Balay rowcount++; 303257b952d6SSatish Balay } 3033cee3aa6bSSatish Balay 303457b952d6SSatish Balay dlens[i] = dcount; 303557b952d6SSatish Balay odlens[i] = odcount; 3036cee3aa6bSSatish Balay 303757b952d6SSatish Balay /* zero out the mask elements we set */ 303857b952d6SSatish Balay for (j=0; j<dcount; j++) mask[masked1[j]] = 0; 303957b952d6SSatish Balay for (j=0; j<odcount; j++) mask[masked2[j]] = 0; 304057b952d6SSatish Balay } 3041cee3aa6bSSatish Balay 304257b952d6SSatish Balay /* create our matrix */ 3043f69a0ea3SMatthew Knepley ierr = MatCreate(comm,&A);CHKERRQ(ierr); 3044f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,m,m,M+extra_rows,N+extra_rows);CHKERRQ(ierr); 304578ae41b4SKris Buschelman ierr = MatSetType(A,type);CHKERRQ(ierr) 304678ae41b4SKris Buschelman ierr = MatMPIBAIJSetPreallocation(A,bs,0,dlens,0,odlens);CHKERRQ(ierr); 304778ae41b4SKris Buschelman 304857b952d6SSatish Balay if (!rank) { 304919c38ff2SBarry Smith ierr = PetscMalloc((maxnz+1)*sizeof(PetscScalar),&buf);CHKERRQ(ierr); 305057b952d6SSatish Balay /* read in my part of the matrix numerical values */ 305157b952d6SSatish Balay nz = procsnz[0]; 305257b952d6SSatish Balay vals = buf; 3053cee3aa6bSSatish Balay mycols = ibuf; 3054cee3aa6bSSatish Balay if (size == 1) nz -= extra_rows; 3055e5638eb3SBarry Smith ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 3056cee3aa6bSSatish Balay if (size == 1) for (i=0; i< extra_rows; i++) { vals[nz+i] = 1.0; } 3057537820f0SBarry Smith 305857b952d6SSatish Balay /* insert into matrix */ 305957b952d6SSatish Balay jj = rstart*bs; 306057b952d6SSatish Balay for (i=0; i<m; i++) { 3061dc231df0SBarry Smith ierr = MatSetValues_MPIBAIJ(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr); 306257b952d6SSatish Balay mycols += locrowlens[i]; 306357b952d6SSatish Balay vals += locrowlens[i]; 306457b952d6SSatish Balay jj++; 306557b952d6SSatish Balay } 306657b952d6SSatish Balay /* read in other processors (except the last one) and ship out */ 306757b952d6SSatish Balay for (i=1; i<size-1; i++) { 306857b952d6SSatish Balay nz = procsnz[i]; 306957b952d6SSatish Balay vals = buf; 3070e5638eb3SBarry Smith ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 30717adad957SLisandro Dalcin ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,((PetscObject)A)->tag,comm);CHKERRQ(ierr); 307257b952d6SSatish Balay } 307357b952d6SSatish Balay /* the last proc */ 307457b952d6SSatish Balay if (size != 1){ 307557b952d6SSatish Balay nz = procsnz[i] - extra_rows; 3076cee3aa6bSSatish Balay vals = buf; 3077e5638eb3SBarry Smith ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 307857b952d6SSatish Balay for (i=0; i<extra_rows; i++) vals[nz+i] = 1.0; 30797adad957SLisandro Dalcin ierr = MPI_Send(vals,nz+extra_rows,MPIU_SCALAR,size-1,((PetscObject)A)->tag,comm);CHKERRQ(ierr); 308057b952d6SSatish Balay } 3081606d414cSSatish Balay ierr = PetscFree(procsnz);CHKERRQ(ierr); 3082d64ed03dSBarry Smith } else { 308357b952d6SSatish Balay /* receive numeric values */ 308419c38ff2SBarry Smith ierr = PetscMalloc((nz+1)*sizeof(PetscScalar),&buf);CHKERRQ(ierr); 308557b952d6SSatish Balay 308657b952d6SSatish Balay /* receive message of values*/ 308757b952d6SSatish Balay vals = buf; 3088cee3aa6bSSatish Balay mycols = ibuf; 30897adad957SLisandro Dalcin ierr = MPI_Recv(vals,nz,MPIU_SCALAR,0,((PetscObject)A)->tag,comm,&status);CHKERRQ(ierr); 3090ca161407SBarry Smith ierr = MPI_Get_count(&status,MPIU_SCALAR,&maxnz);CHKERRQ(ierr); 309129bbc08cSBarry Smith if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 309257b952d6SSatish Balay 309357b952d6SSatish Balay /* insert into matrix */ 309457b952d6SSatish Balay jj = rstart*bs; 3095cee3aa6bSSatish Balay for (i=0; i<m; i++) { 3096dc231df0SBarry Smith ierr = MatSetValues_MPIBAIJ(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr); 309757b952d6SSatish Balay mycols += locrowlens[i]; 309857b952d6SSatish Balay vals += locrowlens[i]; 309957b952d6SSatish Balay jj++; 310057b952d6SSatish Balay } 310157b952d6SSatish Balay } 3102606d414cSSatish Balay ierr = PetscFree(locrowlens);CHKERRQ(ierr); 3103606d414cSSatish Balay ierr = PetscFree(buf);CHKERRQ(ierr); 3104606d414cSSatish Balay ierr = PetscFree(ibuf);CHKERRQ(ierr); 3105dc231df0SBarry Smith ierr = PetscFree2(rowners,browners);CHKERRQ(ierr); 3106dc231df0SBarry Smith ierr = PetscFree2(dlens,odlens);CHKERRQ(ierr); 3107dc231df0SBarry Smith ierr = PetscFree3(mask,masked1,masked2);CHKERRQ(ierr); 31086d4a8577SBarry Smith ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 31096d4a8577SBarry Smith ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 311078ae41b4SKris Buschelman 311178ae41b4SKris Buschelman *newmat = A; 31123a40ed3dSBarry Smith PetscFunctionReturn(0); 311357b952d6SSatish Balay } 311457b952d6SSatish Balay 31154a2ae208SSatish Balay #undef __FUNCT__ 31164a2ae208SSatish Balay #define __FUNCT__ "MatMPIBAIJSetHashTableFactor" 3117133cdb44SSatish Balay /*@ 3118133cdb44SSatish Balay MatMPIBAIJSetHashTableFactor - Sets the factor required to compute the size of the HashTable. 3119133cdb44SSatish Balay 3120133cdb44SSatish Balay Input Parameters: 3121133cdb44SSatish Balay . mat - the matrix 3122133cdb44SSatish Balay . fact - factor 3123133cdb44SSatish Balay 3124fee21e36SBarry Smith Collective on Mat 3125fee21e36SBarry Smith 31268c890885SBarry Smith Level: advanced 31278c890885SBarry Smith 3128133cdb44SSatish Balay Notes: 31298c07d4e3SBarry Smith This can also be set by the command line option: -mat_use_hash_table <fact> 3130133cdb44SSatish Balay 3131133cdb44SSatish Balay .keywords: matrix, hashtable, factor, HT 3132133cdb44SSatish Balay 3133133cdb44SSatish Balay .seealso: MatSetOption() 3134133cdb44SSatish Balay @*/ 3135be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPIBAIJSetHashTableFactor(Mat mat,PetscReal fact) 3136133cdb44SSatish Balay { 3137dfbe8321SBarry Smith PetscErrorCode ierr,(*f)(Mat,PetscReal); 31385bf65638SKris Buschelman 31395bf65638SKris Buschelman PetscFunctionBegin; 31405bf65638SKris Buschelman ierr = PetscObjectQueryFunction((PetscObject)mat,"MatSetHashTableFactor_C",(void (**)(void))&f);CHKERRQ(ierr); 31415bf65638SKris Buschelman if (f) { 31425bf65638SKris Buschelman ierr = (*f)(mat,fact);CHKERRQ(ierr); 31435bf65638SKris Buschelman } 31445bf65638SKris Buschelman PetscFunctionReturn(0); 31455bf65638SKris Buschelman } 31465bf65638SKris Buschelman 3147be1d678aSKris Buschelman EXTERN_C_BEGIN 31485bf65638SKris Buschelman #undef __FUNCT__ 31495bf65638SKris Buschelman #define __FUNCT__ "MatSetHashTableFactor_MPIBAIJ" 3150be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatSetHashTableFactor_MPIBAIJ(Mat mat,PetscReal fact) 31515bf65638SKris Buschelman { 315225fdafccSSatish Balay Mat_MPIBAIJ *baij; 3153133cdb44SSatish Balay 3154133cdb44SSatish Balay PetscFunctionBegin; 3155133cdb44SSatish Balay baij = (Mat_MPIBAIJ*)mat->data; 3156133cdb44SSatish Balay baij->ht_fact = fact; 3157133cdb44SSatish Balay PetscFunctionReturn(0); 3158133cdb44SSatish Balay } 3159be1d678aSKris Buschelman EXTERN_C_END 3160f2a5309cSSatish Balay 31614a2ae208SSatish Balay #undef __FUNCT__ 31624a2ae208SSatish Balay #define __FUNCT__ "MatMPIBAIJGetSeqBAIJ" 3163be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPIBAIJGetSeqBAIJ(Mat A,Mat *Ad,Mat *Ao,PetscInt *colmap[]) 3164f2a5309cSSatish Balay { 3165f2a5309cSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 3166f2a5309cSSatish Balay PetscFunctionBegin; 3167f2a5309cSSatish Balay *Ad = a->A; 3168f2a5309cSSatish Balay *Ao = a->B; 3169195d93cdSBarry Smith *colmap = a->garray; 3170f2a5309cSSatish Balay PetscFunctionReturn(0); 3171f2a5309cSSatish Balay } 317285535b8eSBarry Smith 317385535b8eSBarry Smith /* 317485535b8eSBarry Smith Special version for direct calls from Fortran (to eliminate two function call overheads 317585535b8eSBarry Smith */ 317685535b8eSBarry Smith #if defined(PETSC_HAVE_FORTRAN_CAPS) 317785535b8eSBarry Smith #define matmpibaijsetvaluesblocked_ MATMPIBAIJSETVALUESBLOCKED 317885535b8eSBarry Smith #elif !defined(PETSC_HAVE_FORTRAN_UNDERSCORE) 317985535b8eSBarry Smith #define matmpibaijsetvaluesblocked_ matmpibaijsetvaluesblocked 318085535b8eSBarry Smith #endif 318185535b8eSBarry Smith 318285535b8eSBarry Smith #undef __FUNCT__ 318385535b8eSBarry Smith #define __FUNCT__ "matmpibiajsetvaluesblocked" 318485535b8eSBarry Smith /*@C 318585535b8eSBarry Smith MatMPIBAIJSetValuesBlocked - Direct Fortran call to replace call to MatSetValuesBlocked() 318685535b8eSBarry Smith 318785535b8eSBarry Smith Collective on Mat 318885535b8eSBarry Smith 318985535b8eSBarry Smith Input Parameters: 319085535b8eSBarry Smith + mat - the matrix 319185535b8eSBarry Smith . min - number of input rows 319285535b8eSBarry Smith . im - input rows 319385535b8eSBarry Smith . nin - number of input columns 319485535b8eSBarry Smith . in - input columns 319585535b8eSBarry Smith . v - numerical values input 319685535b8eSBarry Smith - addvin - INSERT_VALUES or ADD_VALUES 319785535b8eSBarry Smith 319885535b8eSBarry Smith Notes: This has a complete copy of MatSetValuesBlocked_MPIBAIJ() which is terrible code un-reuse. 319985535b8eSBarry Smith 320085535b8eSBarry Smith Level: advanced 320185535b8eSBarry Smith 320285535b8eSBarry Smith .seealso: MatSetValuesBlocked() 320385535b8eSBarry Smith @*/ 320485535b8eSBarry Smith PetscErrorCode matmpibaijsetvaluesblocked_(Mat *matin,PetscInt *min,const PetscInt im[],PetscInt *nin,const PetscInt in[],const MatScalar v[],InsertMode *addvin) 320585535b8eSBarry Smith { 320685535b8eSBarry Smith /* convert input arguments to C version */ 320785535b8eSBarry Smith Mat mat = *matin; 320885535b8eSBarry Smith PetscInt m = *min, n = *nin; 320985535b8eSBarry Smith InsertMode addv = *addvin; 321085535b8eSBarry Smith 321185535b8eSBarry Smith Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 321285535b8eSBarry Smith const MatScalar *value; 321385535b8eSBarry Smith MatScalar *barray=baij->barray; 321485535b8eSBarry Smith PetscTruth roworiented = baij->roworiented; 321585535b8eSBarry Smith PetscErrorCode ierr; 321685535b8eSBarry Smith PetscInt i,j,ii,jj,row,col,rstart=baij->rstartbs; 321785535b8eSBarry Smith PetscInt rend=baij->rendbs,cstart=baij->cstartbs,stepval; 3218d0f46423SBarry Smith PetscInt cend=baij->cendbs,bs=mat->rmap->bs,bs2=baij->bs2; 321985535b8eSBarry Smith 322085535b8eSBarry Smith PetscFunctionBegin; 322185535b8eSBarry Smith /* tasks normally handled by MatSetValuesBlocked() */ 322285535b8eSBarry Smith if (mat->insertmode == NOT_SET_VALUES) { 322385535b8eSBarry Smith mat->insertmode = addv; 322485535b8eSBarry Smith } 322585535b8eSBarry Smith #if defined(PETSC_USE_DEBUG) 322685535b8eSBarry Smith else if (mat->insertmode != addv) { 322785535b8eSBarry Smith SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Cannot mix add values and insert values"); 322885535b8eSBarry Smith } 322985535b8eSBarry Smith if (mat->factor) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Not for factored matrix"); 323085535b8eSBarry Smith #endif 323185535b8eSBarry Smith if (mat->assembled) { 323285535b8eSBarry Smith mat->was_assembled = PETSC_TRUE; 323385535b8eSBarry Smith mat->assembled = PETSC_FALSE; 323485535b8eSBarry Smith } 323585535b8eSBarry Smith ierr = PetscLogEventBegin(MAT_SetValues,mat,0,0,0);CHKERRQ(ierr); 323685535b8eSBarry Smith 323785535b8eSBarry Smith 323885535b8eSBarry Smith if(!barray) { 323985535b8eSBarry Smith ierr = PetscMalloc(bs2*sizeof(MatScalar),&barray);CHKERRQ(ierr); 324085535b8eSBarry Smith baij->barray = barray; 324185535b8eSBarry Smith } 324285535b8eSBarry Smith 324385535b8eSBarry Smith if (roworiented) { 324485535b8eSBarry Smith stepval = (n-1)*bs; 324585535b8eSBarry Smith } else { 324685535b8eSBarry Smith stepval = (m-1)*bs; 324785535b8eSBarry Smith } 324885535b8eSBarry Smith for (i=0; i<m; i++) { 324985535b8eSBarry Smith if (im[i] < 0) continue; 325085535b8eSBarry Smith #if defined(PETSC_USE_DEBUG) 325185535b8eSBarry Smith if (im[i] >= baij->Mbs) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large, row %D max %D",im[i],baij->Mbs-1); 325285535b8eSBarry Smith #endif 325385535b8eSBarry Smith if (im[i] >= rstart && im[i] < rend) { 325485535b8eSBarry Smith row = im[i] - rstart; 325585535b8eSBarry Smith for (j=0; j<n; j++) { 325685535b8eSBarry Smith /* If NumCol = 1 then a copy is not required */ 325785535b8eSBarry Smith if ((roworiented) && (n == 1)) { 325885535b8eSBarry Smith barray = (MatScalar*)v + i*bs2; 325985535b8eSBarry Smith } else if((!roworiented) && (m == 1)) { 326085535b8eSBarry Smith barray = (MatScalar*)v + j*bs2; 326185535b8eSBarry Smith } else { /* Here a copy is required */ 326285535b8eSBarry Smith if (roworiented) { 326385535b8eSBarry Smith value = v + i*(stepval+bs)*bs + j*bs; 326485535b8eSBarry Smith } else { 326585535b8eSBarry Smith value = v + j*(stepval+bs)*bs + i*bs; 326685535b8eSBarry Smith } 326785535b8eSBarry Smith for (ii=0; ii<bs; ii++,value+=stepval) { 326885535b8eSBarry Smith for (jj=0; jj<bs; jj++) { 326985535b8eSBarry Smith *barray++ = *value++; 327085535b8eSBarry Smith } 327185535b8eSBarry Smith } 327285535b8eSBarry Smith barray -=bs2; 327385535b8eSBarry Smith } 327485535b8eSBarry Smith 327585535b8eSBarry Smith if (in[j] >= cstart && in[j] < cend){ 327685535b8eSBarry Smith col = in[j] - cstart; 327797e5c40aSBarry Smith ierr = MatSetValuesBlocked_SeqBAIJ(baij->A,1,&row,1,&col,barray,addv);CHKERRQ(ierr); 327885535b8eSBarry Smith } 327985535b8eSBarry Smith else if (in[j] < 0) continue; 328085535b8eSBarry Smith #if defined(PETSC_USE_DEBUG) 328185535b8eSBarry Smith else if (in[j] >= baij->Nbs) {SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large, col %D max %D",in[j],baij->Nbs-1);} 328285535b8eSBarry Smith #endif 328385535b8eSBarry Smith else { 328485535b8eSBarry Smith if (mat->was_assembled) { 328585535b8eSBarry Smith if (!baij->colmap) { 328685535b8eSBarry Smith ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 328785535b8eSBarry Smith } 328885535b8eSBarry Smith 328985535b8eSBarry Smith #if defined(PETSC_USE_DEBUG) 329085535b8eSBarry Smith #if defined (PETSC_USE_CTABLE) 329185535b8eSBarry Smith { PetscInt data; 329285535b8eSBarry Smith ierr = PetscTableFind(baij->colmap,in[j]+1,&data);CHKERRQ(ierr); 329385535b8eSBarry Smith if ((data - 1) % bs) SETERRQ(PETSC_ERR_PLIB,"Incorrect colmap"); 329485535b8eSBarry Smith } 329585535b8eSBarry Smith #else 329685535b8eSBarry Smith if ((baij->colmap[in[j]] - 1) % bs) SETERRQ(PETSC_ERR_PLIB,"Incorrect colmap"); 329785535b8eSBarry Smith #endif 329885535b8eSBarry Smith #endif 329985535b8eSBarry Smith #if defined (PETSC_USE_CTABLE) 330085535b8eSBarry Smith ierr = PetscTableFind(baij->colmap,in[j]+1,&col);CHKERRQ(ierr); 330185535b8eSBarry Smith col = (col - 1)/bs; 330285535b8eSBarry Smith #else 330385535b8eSBarry Smith col = (baij->colmap[in[j]] - 1)/bs; 330485535b8eSBarry Smith #endif 330585535b8eSBarry Smith if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) { 330685535b8eSBarry Smith ierr = DisAssemble_MPIBAIJ(mat);CHKERRQ(ierr); 330785535b8eSBarry Smith col = in[j]; 330885535b8eSBarry Smith } 330985535b8eSBarry Smith } 331085535b8eSBarry Smith else col = in[j]; 331197e5c40aSBarry Smith ierr = MatSetValuesBlocked_SeqBAIJ(baij->B,1,&row,1,&col,barray,addv);CHKERRQ(ierr); 331285535b8eSBarry Smith } 331385535b8eSBarry Smith } 331485535b8eSBarry Smith } else { 331585535b8eSBarry Smith if (!baij->donotstash) { 331685535b8eSBarry Smith if (roworiented) { 331785535b8eSBarry Smith ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 331885535b8eSBarry Smith } else { 331985535b8eSBarry Smith ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 332085535b8eSBarry Smith } 332185535b8eSBarry Smith } 332285535b8eSBarry Smith } 332385535b8eSBarry Smith } 332485535b8eSBarry Smith 332585535b8eSBarry Smith /* task normally handled by MatSetValuesBlocked() */ 332685535b8eSBarry Smith ierr = PetscLogEventEnd(MAT_SetValues,mat,0,0,0);CHKERRQ(ierr); 332785535b8eSBarry Smith PetscFunctionReturn(0); 332885535b8eSBarry Smith } 3329