1c6db04a5SJed Brown #include <../src/mat/impls/baij/mpi/mpibaij.h> /*I "petscmat.h" I*/ 2c5d9258eSSatish Balay 3b51a4376SLisandro Dalcin #include <petsc/private/hashseti.h> 4c6db04a5SJed Brown #include <petscblaslapack.h> 565a92638SMatthew G. Knepley #include <petscsf.h> 679bdfe76SSatish Balay 77ea3e4caSstefano_zampini #if defined(PETSC_HAVE_HYPRE) 87ea3e4caSstefano_zampini PETSC_INTERN PetscErrorCode MatConvert_AIJ_HYPRE(Mat,MatType,MatReuse,Mat*); 97ea3e4caSstefano_zampini #endif 107ea3e4caSstefano_zampini 11985db425SBarry Smith PetscErrorCode MatGetRowMaxAbs_MPIBAIJ(Mat A,Vec v,PetscInt idx[]) 127843d17aSBarry Smith { 137843d17aSBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 144e879edeSHong Zhang PetscInt i,*idxb = NULL,m = A->rmap->n,bs = A->cmap->bs; 154e879edeSHong Zhang PetscScalar *va,*vv; 164e879edeSHong Zhang Vec vB,vA; 174e879edeSHong Zhang const PetscScalar *vb; 187843d17aSBarry Smith 197843d17aSBarry Smith PetscFunctionBegin; 209566063dSJacob Faibussowitsch PetscCall(VecCreateSeq(PETSC_COMM_SELF,m,&vA)); 219566063dSJacob Faibussowitsch PetscCall(MatGetRowMaxAbs(a->A,vA,idx)); 224e879edeSHong Zhang 239566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(vA,&va)); 24985db425SBarry Smith if (idx) { 254e879edeSHong Zhang for (i=0; i<m; i++) { 2626fbe8dcSKarl Rupp if (PetscAbsScalar(va[i])) idx[i] += A->cmap->rstart; 2726fbe8dcSKarl Rupp } 28985db425SBarry Smith } 297843d17aSBarry Smith 309566063dSJacob Faibussowitsch PetscCall(VecCreateSeq(PETSC_COMM_SELF,m,&vB)); 319566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m,&idxb)); 329566063dSJacob Faibussowitsch PetscCall(MatGetRowMaxAbs(a->B,vB,idxb)); 337843d17aSBarry Smith 349566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(v,&vv)); 359566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(vB,&vb)); 364e879edeSHong Zhang for (i=0; i<m; i++) { 3726fbe8dcSKarl Rupp if (PetscAbsScalar(va[i]) < PetscAbsScalar(vb[i])) { 384e879edeSHong Zhang vv[i] = vb[i]; 394e879edeSHong Zhang if (idx) idx[i] = bs*a->garray[idxb[i]/bs] + (idxb[i] % bs); 404e879edeSHong Zhang } else { 414e879edeSHong Zhang vv[i] = va[i]; 4243359b5eSHong Zhang if (idx && PetscAbsScalar(va[i]) == PetscAbsScalar(vb[i]) && idxb[i] != -1 && idx[i] > bs*a->garray[idxb[i]/bs] + (idxb[i] % bs)) 434e879edeSHong Zhang idx[i] = bs*a->garray[idxb[i]/bs] + (idxb[i] % bs); 4426fbe8dcSKarl Rupp } 457843d17aSBarry Smith } 469566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(vA,&vv)); 479566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(vA,&va)); 489566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(vB,&vb)); 499566063dSJacob Faibussowitsch PetscCall(PetscFree(idxb)); 509566063dSJacob Faibussowitsch PetscCall(VecDestroy(&vA)); 519566063dSJacob Faibussowitsch PetscCall(VecDestroy(&vB)); 527843d17aSBarry Smith PetscFunctionReturn(0); 537843d17aSBarry Smith } 547843d17aSBarry Smith 557087cfbeSBarry Smith PetscErrorCode MatStoreValues_MPIBAIJ(Mat mat) 567fc3c18eSBarry Smith { 577fc3c18eSBarry Smith Mat_MPIBAIJ *aij = (Mat_MPIBAIJ*)mat->data; 587fc3c18eSBarry Smith 597fc3c18eSBarry Smith PetscFunctionBegin; 609566063dSJacob Faibussowitsch PetscCall(MatStoreValues(aij->A)); 619566063dSJacob Faibussowitsch PetscCall(MatStoreValues(aij->B)); 627fc3c18eSBarry Smith PetscFunctionReturn(0); 637fc3c18eSBarry Smith } 647fc3c18eSBarry Smith 657087cfbeSBarry Smith PetscErrorCode MatRetrieveValues_MPIBAIJ(Mat mat) 667fc3c18eSBarry Smith { 677fc3c18eSBarry Smith Mat_MPIBAIJ *aij = (Mat_MPIBAIJ*)mat->data; 687fc3c18eSBarry Smith 697fc3c18eSBarry Smith PetscFunctionBegin; 709566063dSJacob Faibussowitsch PetscCall(MatRetrieveValues(aij->A)); 719566063dSJacob Faibussowitsch PetscCall(MatRetrieveValues(aij->B)); 727fc3c18eSBarry Smith PetscFunctionReturn(0); 737fc3c18eSBarry Smith } 747fc3c18eSBarry Smith 75537820f0SBarry Smith /* 76537820f0SBarry Smith Local utility routine that creates a mapping from the global column 7757b952d6SSatish Balay number to the local number in the off-diagonal part of the local 78e06f6af7SJed Brown storage of the matrix. This is done in a non scalable way since the 7957b952d6SSatish Balay length of colmap equals the global matrix length. 8057b952d6SSatish Balay */ 81ab9863d7SBarry Smith PetscErrorCode MatCreateColmap_MPIBAIJ_Private(Mat mat) 8257b952d6SSatish Balay { 8357b952d6SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 8457b952d6SSatish Balay Mat_SeqBAIJ *B = (Mat_SeqBAIJ*)baij->B->data; 85d0f46423SBarry Smith PetscInt nbs = B->nbs,i,bs=mat->rmap->bs; 8657b952d6SSatish Balay 87d64ed03dSBarry Smith PetscFunctionBegin; 88aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 899566063dSJacob Faibussowitsch PetscCall(PetscTableCreate(baij->nbs,baij->Nbs+1,&baij->colmap)); 9048e59246SSatish Balay for (i=0; i<nbs; i++) { 919566063dSJacob Faibussowitsch PetscCall(PetscTableAdd(baij->colmap,baij->garray[i]+1,i*bs+1,INSERT_VALUES)); 9248e59246SSatish Balay } 9348e59246SSatish Balay #else 949566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(baij->Nbs+1,&baij->colmap)); 959566063dSJacob Faibussowitsch PetscCall(PetscLogObjectMemory((PetscObject)mat,baij->Nbs*sizeof(PetscInt))); 96928fc39bSSatish Balay for (i=0; i<nbs; i++) baij->colmap[baij->garray[i]] = i*bs+1; 9748e59246SSatish Balay #endif 983a40ed3dSBarry Smith PetscFunctionReturn(0); 9957b952d6SSatish Balay } 10057b952d6SSatish Balay 101d40312a9SBarry Smith #define MatSetValues_SeqBAIJ_A_Private(row,col,value,addv,orow,ocol) \ 10280c1aa95SSatish Balay { \ 10380c1aa95SSatish Balay brow = row/bs; \ 10480c1aa95SSatish Balay rp = aj + ai[brow]; ap = aa + bs2*ai[brow]; \ 105ac7a638eSSatish Balay rmax = aimax[brow]; nrow = ailen[brow]; \ 10680c1aa95SSatish Balay bcol = col/bs; \ 10780c1aa95SSatish Balay ridx = row % bs; cidx = col % bs; \ 108ab26458aSBarry Smith low = 0; high = nrow; \ 109ab26458aSBarry Smith while (high-low > 3) { \ 110ab26458aSBarry Smith t = (low+high)/2; \ 111ab26458aSBarry Smith if (rp[t] > bcol) high = t; \ 112ab26458aSBarry Smith else low = t; \ 113ab26458aSBarry Smith } \ 114ab26458aSBarry Smith for (_i=low; _i<high; _i++) { \ 11580c1aa95SSatish Balay if (rp[_i] > bcol) break; \ 11680c1aa95SSatish Balay if (rp[_i] == bcol) { \ 11780c1aa95SSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 118eada6651SSatish Balay if (addv == ADD_VALUES) *bap += value; \ 119eada6651SSatish Balay else *bap = value; \ 120ac7a638eSSatish Balay goto a_noinsert; \ 12180c1aa95SSatish Balay } \ 12280c1aa95SSatish Balay } \ 12389280ab3SLois Curfman McInnes if (a->nonew == 1) goto a_noinsert; \ 1245f80ce2aSJacob Faibussowitsch PetscCheck(a->nonew != -1,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", orow, ocol); \ 125fef13f97SBarry Smith MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,brow,bcol,rmax,aa,ai,aj,rp,ap,aimax,a->nonew,MatScalar); \ 12680c1aa95SSatish Balay N = nrow++ - 1; \ 12780c1aa95SSatish Balay /* shift up all the later entries in this row */ \ 1289566063dSJacob Faibussowitsch PetscCall(PetscArraymove(rp+_i+1,rp+_i,N-_i+1));\ 1299566063dSJacob Faibussowitsch PetscCall(PetscArraymove(ap+bs2*(_i+1),ap+bs2*_i,bs2*(N-_i+1))); \ 1309566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(ap+bs2*_i,bs2)); \ 13180c1aa95SSatish Balay rp[_i] = bcol; \ 13280c1aa95SSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 133ac7a638eSSatish Balay a_noinsert:; \ 13480c1aa95SSatish Balay ailen[brow] = nrow; \ 13580c1aa95SSatish Balay } 13657b952d6SSatish Balay 137d40312a9SBarry Smith #define MatSetValues_SeqBAIJ_B_Private(row,col,value,addv,orow,ocol) \ 138ac7a638eSSatish Balay { \ 139ac7a638eSSatish Balay brow = row/bs; \ 140ac7a638eSSatish Balay rp = bj + bi[brow]; ap = ba + bs2*bi[brow]; \ 141ac7a638eSSatish Balay rmax = bimax[brow]; nrow = bilen[brow]; \ 142ac7a638eSSatish Balay bcol = col/bs; \ 143ac7a638eSSatish Balay ridx = row % bs; cidx = col % bs; \ 144ac7a638eSSatish Balay low = 0; high = nrow; \ 145ac7a638eSSatish Balay while (high-low > 3) { \ 146ac7a638eSSatish Balay t = (low+high)/2; \ 147ac7a638eSSatish Balay if (rp[t] > bcol) high = t; \ 148ac7a638eSSatish Balay else low = t; \ 149ac7a638eSSatish Balay } \ 150ac7a638eSSatish Balay for (_i=low; _i<high; _i++) { \ 151ac7a638eSSatish Balay if (rp[_i] > bcol) break; \ 152ac7a638eSSatish Balay if (rp[_i] == bcol) { \ 153ac7a638eSSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 154ac7a638eSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 155ac7a638eSSatish Balay else *bap = value; \ 156ac7a638eSSatish Balay goto b_noinsert; \ 157ac7a638eSSatish Balay } \ 158ac7a638eSSatish Balay } \ 15989280ab3SLois Curfman McInnes if (b->nonew == 1) goto b_noinsert; \ 1605f80ce2aSJacob Faibussowitsch PetscCheck(b->nonew != -1,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", orow, ocol); \ 161fef13f97SBarry Smith MatSeqXAIJReallocateAIJ(B,b->mbs,bs2,nrow,brow,bcol,rmax,ba,bi,bj,rp,ap,bimax,b->nonew,MatScalar); \ 162ac7a638eSSatish Balay N = nrow++ - 1; \ 163ac7a638eSSatish Balay /* shift up all the later entries in this row */ \ 1649566063dSJacob Faibussowitsch PetscCall(PetscArraymove(rp+_i+1,rp+_i,N-_i+1));\ 1659566063dSJacob Faibussowitsch PetscCall(PetscArraymove(ap+bs2*(_i+1),ap+bs2*_i,bs2*(N-_i+1)));\ 1669566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(ap+bs2*_i,bs2)); \ 167ac7a638eSSatish Balay rp[_i] = bcol; \ 168ac7a638eSSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 169ac7a638eSSatish Balay b_noinsert:; \ 170ac7a638eSSatish Balay bilen[brow] = nrow; \ 171ac7a638eSSatish Balay } 172ac7a638eSSatish Balay 173b24ad042SBarry Smith PetscErrorCode MatSetValues_MPIBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv) 17457b952d6SSatish Balay { 17557b952d6SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 17693fea6afSBarry Smith MatScalar value; 177ace3abfcSBarry Smith PetscBool roworiented = baij->roworiented; 178b24ad042SBarry Smith PetscInt i,j,row,col; 179d0f46423SBarry Smith PetscInt rstart_orig=mat->rmap->rstart; 180d0f46423SBarry Smith PetscInt rend_orig =mat->rmap->rend,cstart_orig=mat->cmap->rstart; 181d0f46423SBarry Smith PetscInt cend_orig =mat->cmap->rend,bs=mat->rmap->bs; 18257b952d6SSatish Balay 183eada6651SSatish Balay /* Some Variables required in the macro */ 18480c1aa95SSatish Balay Mat A = baij->A; 18580c1aa95SSatish Balay Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)(A)->data; 186b24ad042SBarry Smith PetscInt *aimax=a->imax,*ai=a->i,*ailen=a->ilen,*aj=a->j; 1873eda8832SBarry Smith MatScalar *aa =a->a; 188ac7a638eSSatish Balay 189ac7a638eSSatish Balay Mat B = baij->B; 190ac7a638eSSatish Balay Mat_SeqBAIJ *b = (Mat_SeqBAIJ*)(B)->data; 191b24ad042SBarry Smith PetscInt *bimax=b->imax,*bi=b->i,*bilen=b->ilen,*bj=b->j; 1923eda8832SBarry Smith MatScalar *ba =b->a; 193ac7a638eSSatish Balay 194b24ad042SBarry Smith PetscInt *rp,ii,nrow,_i,rmax,N,brow,bcol; 195b24ad042SBarry Smith PetscInt low,high,t,ridx,cidx,bs2=a->bs2; 1963eda8832SBarry Smith MatScalar *ap,*bap; 19780c1aa95SSatish Balay 198d64ed03dSBarry Smith PetscFunctionBegin; 19957b952d6SSatish Balay for (i=0; i<m; i++) { 2005ef9f2a5SBarry Smith if (im[i] < 0) continue; 2015f80ce2aSJacob Faibussowitsch PetscCheck(im[i] < mat->rmap->N,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT,im[i],mat->rmap->N-1); 20257b952d6SSatish Balay if (im[i] >= rstart_orig && im[i] < rend_orig) { 20357b952d6SSatish Balay row = im[i] - rstart_orig; 20457b952d6SSatish Balay for (j=0; j<n; j++) { 20557b952d6SSatish Balay if (in[j] >= cstart_orig && in[j] < cend_orig) { 20657b952d6SSatish Balay col = in[j] - cstart_orig; 207db4deed7SKarl Rupp if (roworiented) value = v[i*n+j]; 208db4deed7SKarl Rupp else value = v[i+j*m]; 209d40312a9SBarry Smith MatSetValues_SeqBAIJ_A_Private(row,col,value,addv,im[i],in[j]); 210f7d195e4SLawrence Mitchell } else if (in[j] < 0) { 211f7d195e4SLawrence Mitchell continue; 212f7d195e4SLawrence Mitchell } else { 213f7d195e4SLawrence Mitchell PetscCheck(in[j] < mat->cmap->N,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT,in[j],mat->cmap->N-1); 21457b952d6SSatish Balay if (mat->was_assembled) { 215905e6a2fSBarry Smith if (!baij->colmap) { 2169566063dSJacob Faibussowitsch PetscCall(MatCreateColmap_MPIBAIJ_Private(mat)); 217905e6a2fSBarry Smith } 218aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 2199566063dSJacob Faibussowitsch PetscCall(PetscTableFind(baij->colmap,in[j]/bs + 1,&col)); 220bba1ac68SSatish Balay col = col - 1; 22148e59246SSatish Balay #else 222bba1ac68SSatish Balay col = baij->colmap[in[j]/bs] - 1; 22348e59246SSatish Balay #endif 224c9ef50b2SBarry Smith if (col < 0 && !((Mat_SeqBAIJ*)(baij->B->data))->nonew) { 2259566063dSJacob Faibussowitsch PetscCall(MatDisAssemble_MPIBAIJ(mat)); 2268295de27SSatish Balay col = in[j]; 2279bf004c3SSatish Balay /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */ 2289bf004c3SSatish Balay B = baij->B; 2299bf004c3SSatish Balay b = (Mat_SeqBAIJ*)(B)->data; 2309bf004c3SSatish Balay bimax=b->imax;bi=b->i;bilen=b->ilen;bj=b->j; 2319bf004c3SSatish Balay ba =b->a; 232f7d195e4SLawrence Mitchell } else { 233f7d195e4SLawrence Mitchell PetscCheck(col >= 0,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", im[i], in[j]); 234f7d195e4SLawrence Mitchell col += in[j]%bs; 235f7d195e4SLawrence Mitchell } 2368295de27SSatish Balay } else col = in[j]; 237db4deed7SKarl Rupp if (roworiented) value = v[i*n+j]; 238db4deed7SKarl Rupp else value = v[i+j*m]; 239d40312a9SBarry Smith MatSetValues_SeqBAIJ_B_Private(row,col,value,addv,im[i],in[j]); 2409566063dSJacob Faibussowitsch /* PetscCall(MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv)); */ 24157b952d6SSatish Balay } 24257b952d6SSatish Balay } 243d64ed03dSBarry Smith } else { 2445f80ce2aSJacob Faibussowitsch PetscCheck(!mat->nooffprocentries,PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Setting off process row %" PetscInt_FMT " even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set",im[i]); 24590f02eecSBarry Smith if (!baij->donotstash) { 2465080c13bSMatthew G Knepley mat->assembled = PETSC_FALSE; 247ff2fd236SBarry Smith if (roworiented) { 2489566063dSJacob Faibussowitsch PetscCall(MatStashValuesRow_Private(&mat->stash,im[i],n,in,v+i*n,PETSC_FALSE)); 249ff2fd236SBarry Smith } else { 2509566063dSJacob Faibussowitsch PetscCall(MatStashValuesCol_Private(&mat->stash,im[i],n,in,v+i,m,PETSC_FALSE)); 25157b952d6SSatish Balay } 25257b952d6SSatish Balay } 25357b952d6SSatish Balay } 25490f02eecSBarry Smith } 2553a40ed3dSBarry Smith PetscFunctionReturn(0); 25657b952d6SSatish Balay } 25757b952d6SSatish Balay 2589fbee547SJacob Faibussowitsch static inline PetscErrorCode MatSetValuesBlocked_SeqBAIJ_Inlined(Mat A,PetscInt row,PetscInt col,const PetscScalar v[],InsertMode is,PetscInt orow,PetscInt ocol) 259880c6e6aSBarry Smith { 260880c6e6aSBarry Smith Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data; 2618ab52850SBarry Smith PetscInt *rp,low,high,t,ii,jj,nrow,i,rmax,N; 262880c6e6aSBarry Smith PetscInt *imax=a->imax,*ai=a->i,*ailen=a->ilen; 2638ab52850SBarry Smith PetscInt *aj =a->j,nonew=a->nonew,bs2=a->bs2,bs=A->rmap->bs; 264880c6e6aSBarry Smith PetscBool roworiented=a->roworiented; 265880c6e6aSBarry Smith const PetscScalar *value = v; 266880c6e6aSBarry Smith MatScalar *ap,*aa = a->a,*bap; 267880c6e6aSBarry Smith 268880c6e6aSBarry Smith PetscFunctionBegin; 269880c6e6aSBarry Smith rp = aj + ai[row]; 270880c6e6aSBarry Smith ap = aa + bs2*ai[row]; 271880c6e6aSBarry Smith rmax = imax[row]; 272880c6e6aSBarry Smith nrow = ailen[row]; 2738ab52850SBarry Smith value = v; 2748ab52850SBarry Smith low = 0; 2758ab52850SBarry Smith high = nrow; 276880c6e6aSBarry Smith while (high-low > 7) { 277880c6e6aSBarry Smith t = (low+high)/2; 278880c6e6aSBarry Smith if (rp[t] > col) high = t; 279880c6e6aSBarry Smith else low = t; 280880c6e6aSBarry Smith } 281880c6e6aSBarry Smith for (i=low; i<high; i++) { 282880c6e6aSBarry Smith if (rp[i] > col) break; 283880c6e6aSBarry Smith if (rp[i] == col) { 284880c6e6aSBarry Smith bap = ap + bs2*i; 285880c6e6aSBarry Smith if (roworiented) { 286880c6e6aSBarry Smith if (is == ADD_VALUES) { 2878ab52850SBarry Smith for (ii=0; ii<bs; ii++) { 288880c6e6aSBarry Smith for (jj=ii; jj<bs2; jj+=bs) { 289880c6e6aSBarry Smith bap[jj] += *value++; 290880c6e6aSBarry Smith } 291880c6e6aSBarry Smith } 292880c6e6aSBarry Smith } else { 2938ab52850SBarry Smith for (ii=0; ii<bs; ii++) { 294880c6e6aSBarry Smith for (jj=ii; jj<bs2; jj+=bs) { 295880c6e6aSBarry Smith bap[jj] = *value++; 296880c6e6aSBarry Smith } 297880c6e6aSBarry Smith } 298880c6e6aSBarry Smith } 299880c6e6aSBarry Smith } else { 300880c6e6aSBarry Smith if (is == ADD_VALUES) { 3018ab52850SBarry Smith for (ii=0; ii<bs; ii++,value+=bs) { 302880c6e6aSBarry Smith for (jj=0; jj<bs; jj++) { 303880c6e6aSBarry Smith bap[jj] += value[jj]; 304880c6e6aSBarry Smith } 305880c6e6aSBarry Smith bap += bs; 306880c6e6aSBarry Smith } 307880c6e6aSBarry Smith } else { 3088ab52850SBarry Smith for (ii=0; ii<bs; ii++,value+=bs) { 309880c6e6aSBarry Smith for (jj=0; jj<bs; jj++) { 310880c6e6aSBarry Smith bap[jj] = value[jj]; 311880c6e6aSBarry Smith } 312880c6e6aSBarry Smith bap += bs; 313880c6e6aSBarry Smith } 314880c6e6aSBarry Smith } 315880c6e6aSBarry Smith } 316880c6e6aSBarry Smith goto noinsert2; 317880c6e6aSBarry Smith } 318880c6e6aSBarry Smith } 319880c6e6aSBarry Smith if (nonew == 1) goto noinsert2; 3205f80ce2aSJacob Faibussowitsch PetscCheck(nonew != -1,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new global block indexed nonzero block (%" PetscInt_FMT ", %" PetscInt_FMT ") in the matrix", orow, ocol); 321880c6e6aSBarry Smith MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,row,col,rmax,aa,ai,aj,rp,ap,imax,nonew,MatScalar); 322880c6e6aSBarry Smith N = nrow++ - 1; high++; 323880c6e6aSBarry Smith /* shift up all the later entries in this row */ 3249566063dSJacob Faibussowitsch PetscCall(PetscArraymove(rp+i+1,rp+i,N-i+1)); 3259566063dSJacob Faibussowitsch PetscCall(PetscArraymove(ap+bs2*(i+1),ap+bs2*i,bs2*(N-i+1))); 326880c6e6aSBarry Smith rp[i] = col; 327880c6e6aSBarry Smith bap = ap + bs2*i; 328880c6e6aSBarry Smith if (roworiented) { 3298ab52850SBarry Smith for (ii=0; ii<bs; ii++) { 330880c6e6aSBarry Smith for (jj=ii; jj<bs2; jj+=bs) { 331880c6e6aSBarry Smith bap[jj] = *value++; 332880c6e6aSBarry Smith } 333880c6e6aSBarry Smith } 334880c6e6aSBarry Smith } else { 3358ab52850SBarry Smith for (ii=0; ii<bs; ii++) { 336880c6e6aSBarry Smith for (jj=0; jj<bs; jj++) { 337880c6e6aSBarry Smith *bap++ = *value++; 338880c6e6aSBarry Smith } 339880c6e6aSBarry Smith } 340880c6e6aSBarry Smith } 341880c6e6aSBarry Smith noinsert2:; 342880c6e6aSBarry Smith ailen[row] = nrow; 343880c6e6aSBarry Smith PetscFunctionReturn(0); 344880c6e6aSBarry Smith } 345880c6e6aSBarry Smith 3468ab52850SBarry Smith /* 3478ab52850SBarry Smith This routine should be optimized so that the block copy at ** Here a copy is required ** below is not needed 3488ab52850SBarry Smith by passing additional stride information into the MatSetValuesBlocked_SeqBAIJ_Inlined() routine 3498ab52850SBarry Smith */ 35097e5c40aSBarry Smith PetscErrorCode MatSetValuesBlocked_MPIBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv) 351ab26458aSBarry Smith { 352ab26458aSBarry Smith Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 353dd6ea824SBarry Smith const PetscScalar *value; 354f15d580aSBarry Smith MatScalar *barray = baij->barray; 355ace3abfcSBarry Smith PetscBool roworiented = baij->roworiented; 356899cda47SBarry Smith PetscInt i,j,ii,jj,row,col,rstart=baij->rstartbs; 357899cda47SBarry Smith PetscInt rend=baij->rendbs,cstart=baij->cstartbs,stepval; 358d0f46423SBarry Smith PetscInt cend=baij->cendbs,bs=mat->rmap->bs,bs2=baij->bs2; 359ab26458aSBarry Smith 360b16ae2b1SBarry Smith PetscFunctionBegin; 36130793edcSSatish Balay if (!barray) { 3629566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(bs2,&barray)); 36382502324SSatish Balay baij->barray = barray; 36430793edcSSatish Balay } 36530793edcSSatish Balay 36626fbe8dcSKarl Rupp if (roworiented) stepval = (n-1)*bs; 36726fbe8dcSKarl Rupp else stepval = (m-1)*bs; 36826fbe8dcSKarl Rupp 369ab26458aSBarry Smith for (i=0; i<m; i++) { 3705ef9f2a5SBarry Smith if (im[i] < 0) continue; 3716bdcaf15SBarry Smith PetscCheck(im[i] < baij->Mbs,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Block indexed row too large %" PetscInt_FMT " max %" PetscInt_FMT,im[i],baij->Mbs-1); 372ab26458aSBarry Smith if (im[i] >= rstart && im[i] < rend) { 373ab26458aSBarry Smith row = im[i] - rstart; 374ab26458aSBarry Smith for (j=0; j<n; j++) { 37515b57d14SSatish Balay /* If NumCol = 1 then a copy is not required */ 37615b57d14SSatish Balay if ((roworiented) && (n == 1)) { 377f15d580aSBarry Smith barray = (MatScalar*)v + i*bs2; 37815b57d14SSatish Balay } else if ((!roworiented) && (m == 1)) { 379f15d580aSBarry Smith barray = (MatScalar*)v + j*bs2; 38015b57d14SSatish Balay } else { /* Here a copy is required */ 381ab26458aSBarry Smith if (roworiented) { 38253ef36baSBarry Smith value = v + (i*(stepval+bs) + j)*bs; 383ab26458aSBarry Smith } else { 38453ef36baSBarry Smith value = v + (j*(stepval+bs) + i)*bs; 385abef11f7SSatish Balay } 38653ef36baSBarry Smith for (ii=0; ii<bs; ii++,value+=bs+stepval) { 38726fbe8dcSKarl Rupp for (jj=0; jj<bs; jj++) barray[jj] = value[jj]; 38853ef36baSBarry Smith barray += bs; 38947513183SBarry Smith } 39030793edcSSatish Balay barray -= bs2; 39115b57d14SSatish Balay } 392abef11f7SSatish Balay 393abef11f7SSatish Balay if (in[j] >= cstart && in[j] < cend) { 394abef11f7SSatish Balay col = in[j] - cstart; 3959566063dSJacob Faibussowitsch PetscCall(MatSetValuesBlocked_SeqBAIJ_Inlined(baij->A,row,col,barray,addv,im[i],in[j])); 396f7d195e4SLawrence Mitchell } else if (in[j] < 0) { 397f7d195e4SLawrence Mitchell continue; 398f7d195e4SLawrence Mitchell } else { 399f7d195e4SLawrence Mitchell PetscCheck(in[j] < baij->Nbs,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Block indexed column too large %" PetscInt_FMT " max %" PetscInt_FMT,in[j],baij->Nbs-1); 400ab26458aSBarry Smith if (mat->was_assembled) { 401ab26458aSBarry Smith if (!baij->colmap) { 4029566063dSJacob Faibussowitsch PetscCall(MatCreateColmap_MPIBAIJ_Private(mat)); 403ab26458aSBarry Smith } 404a5eb4965SSatish Balay 4052515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 406aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 407b24ad042SBarry Smith { PetscInt data; 4089566063dSJacob Faibussowitsch PetscCall(PetscTableFind(baij->colmap,in[j]+1,&data)); 40908401ef6SPierre Jolivet PetscCheck((data - 1) % bs == 0,PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap"); 410fa46199cSSatish Balay } 41148e59246SSatish Balay #else 41208401ef6SPierre Jolivet PetscCheck((baij->colmap[in[j]] - 1) % bs == 0,PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap"); 413a5eb4965SSatish Balay #endif 41448e59246SSatish Balay #endif 415aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 4169566063dSJacob Faibussowitsch PetscCall(PetscTableFind(baij->colmap,in[j]+1,&col)); 417fa46199cSSatish Balay col = (col - 1)/bs; 41848e59246SSatish Balay #else 419a5eb4965SSatish Balay col = (baij->colmap[in[j]] - 1)/bs; 42048e59246SSatish Balay #endif 4210e9bae81SBarry Smith if (col < 0 && !((Mat_SeqBAIJ*)(baij->B->data))->nonew) { 4229566063dSJacob Faibussowitsch PetscCall(MatDisAssemble_MPIBAIJ(mat)); 423ab26458aSBarry Smith col = in[j]; 4245f80ce2aSJacob Faibussowitsch } else PetscCheck(col >= 0,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new blocked indexed nonzero block (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix",im[i],in[j]); 425db4deed7SKarl Rupp } else col = in[j]; 4269566063dSJacob Faibussowitsch PetscCall(MatSetValuesBlocked_SeqBAIJ_Inlined(baij->B,row,col,barray,addv,im[i],in[j])); 427ab26458aSBarry Smith } 428ab26458aSBarry Smith } 429d64ed03dSBarry Smith } else { 4305f80ce2aSJacob Faibussowitsch PetscCheck(!mat->nooffprocentries,PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Setting off process block indexed row %" PetscInt_FMT " even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set",im[i]); 431ab26458aSBarry Smith if (!baij->donotstash) { 432ff2fd236SBarry Smith if (roworiented) { 4339566063dSJacob Faibussowitsch PetscCall(MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i)); 434ff2fd236SBarry Smith } else { 4359566063dSJacob Faibussowitsch PetscCall(MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i)); 436ff2fd236SBarry Smith } 437abef11f7SSatish Balay } 438ab26458aSBarry Smith } 439ab26458aSBarry Smith } 4403a40ed3dSBarry Smith PetscFunctionReturn(0); 441ab26458aSBarry Smith } 4426fa18ffdSBarry Smith 4430bdbc534SSatish Balay #define HASH_KEY 0.6180339887 444b24ad042SBarry Smith #define HASH(size,key,tmp) (tmp = (key)*HASH_KEY,(PetscInt)((size)*(tmp-(PetscInt)tmp))) 445b24ad042SBarry Smith /* #define HASH(size,key) ((PetscInt)((size)*fmod(((key)*HASH_KEY),1))) */ 446b24ad042SBarry Smith /* #define HASH(size,key,tmp) ((PetscInt)((size)*fmod(((key)*HASH_KEY),1))) */ 44797e5c40aSBarry Smith PetscErrorCode MatSetValues_MPIBAIJ_HT(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv) 4480bdbc534SSatish Balay { 4490bdbc534SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 450ace3abfcSBarry Smith PetscBool roworiented = baij->roworiented; 451b24ad042SBarry Smith PetscInt i,j,row,col; 452d0f46423SBarry Smith PetscInt rstart_orig=mat->rmap->rstart; 453d0f46423SBarry Smith PetscInt rend_orig =mat->rmap->rend,Nbs=baij->Nbs; 454d0f46423SBarry Smith PetscInt h1,key,size=baij->ht_size,bs=mat->rmap->bs,*HT=baij->ht,idx; 455329f5518SBarry Smith PetscReal tmp; 4563eda8832SBarry Smith MatScalar **HD = baij->hd,value; 457b24ad042SBarry Smith PetscInt total_ct=baij->ht_total_ct,insert_ct=baij->ht_insert_ct; 4580bdbc534SSatish Balay 4590bdbc534SSatish Balay PetscFunctionBegin; 4600bdbc534SSatish Balay for (i=0; i<m; i++) { 46176bd3646SJed Brown if (PetscDefined(USE_DEBUG)) { 4625f80ce2aSJacob Faibussowitsch PetscCheck(im[i] >= 0,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative row"); 4635f80ce2aSJacob Faibussowitsch PetscCheck(im[i] < mat->rmap->N,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT,im[i],mat->rmap->N-1); 46476bd3646SJed Brown } 4650bdbc534SSatish Balay row = im[i]; 466c2760754SSatish Balay if (row >= rstart_orig && row < rend_orig) { 4670bdbc534SSatish Balay for (j=0; j<n; j++) { 4680bdbc534SSatish Balay col = in[j]; 469db4deed7SKarl Rupp if (roworiented) value = v[i*n+j]; 470db4deed7SKarl Rupp else value = v[i+j*m]; 471b24ad042SBarry Smith /* Look up PetscInto the Hash Table */ 472c2760754SSatish Balay key = (row/bs)*Nbs+(col/bs)+1; 473c2760754SSatish Balay h1 = HASH(size,key,tmp); 4740bdbc534SSatish Balay 475c2760754SSatish Balay idx = h1; 47676bd3646SJed Brown if (PetscDefined(USE_DEBUG)) { 477187ce0cbSSatish Balay insert_ct++; 478187ce0cbSSatish Balay total_ct++; 479187ce0cbSSatish Balay if (HT[idx] != key) { 480187ce0cbSSatish Balay for (idx=h1; (idx<size) && (HT[idx]!=key); idx++,total_ct++) ; 481187ce0cbSSatish Balay if (idx == size) { 482187ce0cbSSatish Balay for (idx=0; (idx<h1) && (HT[idx]!=key); idx++,total_ct++) ; 4835f80ce2aSJacob Faibussowitsch PetscCheck(idx != h1,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"(%" PetscInt_FMT ",%" PetscInt_FMT ") has no entry in the hash table", row, col); 484187ce0cbSSatish Balay } 485187ce0cbSSatish Balay } 48676bd3646SJed Brown } else if (HT[idx] != key) { 487c2760754SSatish Balay for (idx=h1; (idx<size) && (HT[idx]!=key); idx++) ; 488c2760754SSatish Balay if (idx == size) { 489c2760754SSatish Balay for (idx=0; (idx<h1) && (HT[idx]!=key); idx++) ; 4905f80ce2aSJacob Faibussowitsch PetscCheck(idx != h1,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"(%" PetscInt_FMT ",%" PetscInt_FMT ") has no entry in the hash table", row, col); 491c2760754SSatish Balay } 492c2760754SSatish Balay } 493c2760754SSatish Balay /* A HASH table entry is found, so insert the values at the correct address */ 494c2760754SSatish Balay if (addv == ADD_VALUES) *(HD[idx]+ (col % bs)*bs + (row % bs)) += value; 495c2760754SSatish Balay else *(HD[idx]+ (col % bs)*bs + (row % bs)) = value; 4960bdbc534SSatish Balay } 49726fbe8dcSKarl Rupp } else if (!baij->donotstash) { 498ff2fd236SBarry Smith if (roworiented) { 4999566063dSJacob Faibussowitsch PetscCall(MatStashValuesRow_Private(&mat->stash,im[i],n,in,v+i*n,PETSC_FALSE)); 500ff2fd236SBarry Smith } else { 5019566063dSJacob Faibussowitsch PetscCall(MatStashValuesCol_Private(&mat->stash,im[i],n,in,v+i,m,PETSC_FALSE)); 5020bdbc534SSatish Balay } 5030bdbc534SSatish Balay } 5040bdbc534SSatish Balay } 50576bd3646SJed Brown if (PetscDefined(USE_DEBUG)) { 506abf3b562SBarry Smith baij->ht_total_ct += total_ct; 507abf3b562SBarry Smith baij->ht_insert_ct += insert_ct; 50876bd3646SJed Brown } 5090bdbc534SSatish Balay PetscFunctionReturn(0); 5100bdbc534SSatish Balay } 5110bdbc534SSatish Balay 51297e5c40aSBarry Smith PetscErrorCode MatSetValuesBlocked_MPIBAIJ_HT(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv) 5130bdbc534SSatish Balay { 5140bdbc534SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 515ace3abfcSBarry Smith PetscBool roworiented = baij->roworiented; 516b24ad042SBarry Smith PetscInt i,j,ii,jj,row,col; 517899cda47SBarry Smith PetscInt rstart=baij->rstartbs; 518d0f46423SBarry Smith PetscInt rend =mat->rmap->rend,stepval,bs=mat->rmap->bs,bs2=baij->bs2,nbs2=n*bs2; 519b24ad042SBarry Smith PetscInt h1,key,size=baij->ht_size,idx,*HT=baij->ht,Nbs=baij->Nbs; 520329f5518SBarry Smith PetscReal tmp; 5213eda8832SBarry Smith MatScalar **HD = baij->hd,*baij_a; 522dd6ea824SBarry Smith const PetscScalar *v_t,*value; 523b24ad042SBarry Smith PetscInt total_ct=baij->ht_total_ct,insert_ct=baij->ht_insert_ct; 5240bdbc534SSatish Balay 525d0a41580SSatish Balay PetscFunctionBegin; 52626fbe8dcSKarl Rupp if (roworiented) stepval = (n-1)*bs; 52726fbe8dcSKarl Rupp else stepval = (m-1)*bs; 52826fbe8dcSKarl Rupp 5290bdbc534SSatish Balay for (i=0; i<m; i++) { 53076bd3646SJed Brown if (PetscDefined(USE_DEBUG)) { 5315f80ce2aSJacob Faibussowitsch PetscCheck(im[i] >= 0,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %" PetscInt_FMT,im[i]); 5325f80ce2aSJacob Faibussowitsch PetscCheck(im[i] < baij->Mbs,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT,im[i],baij->Mbs-1); 53376bd3646SJed Brown } 5340bdbc534SSatish Balay row = im[i]; 535ab715e2cSSatish Balay v_t = v + i*nbs2; 536c2760754SSatish Balay if (row >= rstart && row < rend) { 5370bdbc534SSatish Balay for (j=0; j<n; j++) { 5380bdbc534SSatish Balay col = in[j]; 5390bdbc534SSatish Balay 5400bdbc534SSatish Balay /* Look up into the Hash Table */ 541c2760754SSatish Balay key = row*Nbs+col+1; 542c2760754SSatish Balay h1 = HASH(size,key,tmp); 5430bdbc534SSatish Balay 544c2760754SSatish Balay idx = h1; 54576bd3646SJed Brown if (PetscDefined(USE_DEBUG)) { 546187ce0cbSSatish Balay total_ct++; 547187ce0cbSSatish Balay insert_ct++; 548187ce0cbSSatish Balay if (HT[idx] != key) { 549187ce0cbSSatish Balay for (idx=h1; (idx<size) && (HT[idx]!=key); idx++,total_ct++) ; 550187ce0cbSSatish Balay if (idx == size) { 551187ce0cbSSatish Balay for (idx=0; (idx<h1) && (HT[idx]!=key); idx++,total_ct++) ; 5525f80ce2aSJacob Faibussowitsch PetscCheck(idx != h1,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"(%" PetscInt_FMT ",%" PetscInt_FMT ") has no entry in the hash table", row, col); 553187ce0cbSSatish Balay } 554187ce0cbSSatish Balay } 55576bd3646SJed Brown } else if (HT[idx] != key) { 556c2760754SSatish Balay for (idx=h1; (idx<size) && (HT[idx]!=key); idx++) ; 557c2760754SSatish Balay if (idx == size) { 558c2760754SSatish Balay for (idx=0; (idx<h1) && (HT[idx]!=key); idx++) ; 5595f80ce2aSJacob Faibussowitsch PetscCheck(idx != h1,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"(%" PetscInt_FMT ",%" PetscInt_FMT ") has no entry in the hash table", row, col); 560c2760754SSatish Balay } 561c2760754SSatish Balay } 562c2760754SSatish Balay baij_a = HD[idx]; 5630bdbc534SSatish Balay if (roworiented) { 564c2760754SSatish Balay /*value = v + i*(stepval+bs)*bs + j*bs;*/ 565187ce0cbSSatish Balay /* value = v + (i*(stepval+bs)+j)*bs; */ 566187ce0cbSSatish Balay value = v_t; 567187ce0cbSSatish Balay v_t += bs; 568fef45726SSatish Balay if (addv == ADD_VALUES) { 569c2760754SSatish Balay for (ii=0; ii<bs; ii++,value+=stepval) { 570c2760754SSatish Balay for (jj=ii; jj<bs2; jj+=bs) { 571fef45726SSatish Balay baij_a[jj] += *value++; 572b4cc0f5aSSatish Balay } 573b4cc0f5aSSatish Balay } 574fef45726SSatish Balay } else { 575c2760754SSatish Balay for (ii=0; ii<bs; ii++,value+=stepval) { 576c2760754SSatish Balay for (jj=ii; jj<bs2; jj+=bs) { 577fef45726SSatish Balay baij_a[jj] = *value++; 578fef45726SSatish Balay } 579fef45726SSatish Balay } 580fef45726SSatish Balay } 5810bdbc534SSatish Balay } else { 5820bdbc534SSatish Balay value = v + j*(stepval+bs)*bs + i*bs; 583fef45726SSatish Balay if (addv == ADD_VALUES) { 584b4cc0f5aSSatish Balay for (ii=0; ii<bs; ii++,value+=stepval,baij_a+=bs) { 5850bdbc534SSatish Balay for (jj=0; jj<bs; jj++) { 586fef45726SSatish Balay baij_a[jj] += *value++; 587fef45726SSatish Balay } 588fef45726SSatish Balay } 589fef45726SSatish Balay } else { 590fef45726SSatish Balay for (ii=0; ii<bs; ii++,value+=stepval,baij_a+=bs) { 591fef45726SSatish Balay for (jj=0; jj<bs; jj++) { 592fef45726SSatish Balay baij_a[jj] = *value++; 593fef45726SSatish Balay } 594b4cc0f5aSSatish Balay } 5950bdbc534SSatish Balay } 5960bdbc534SSatish Balay } 5970bdbc534SSatish Balay } 5980bdbc534SSatish Balay } else { 5990bdbc534SSatish Balay if (!baij->donotstash) { 6000bdbc534SSatish Balay if (roworiented) { 6019566063dSJacob Faibussowitsch PetscCall(MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i)); 6020bdbc534SSatish Balay } else { 6039566063dSJacob Faibussowitsch PetscCall(MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i)); 6040bdbc534SSatish Balay } 6050bdbc534SSatish Balay } 6060bdbc534SSatish Balay } 6070bdbc534SSatish Balay } 60876bd3646SJed Brown if (PetscDefined(USE_DEBUG)) { 609abf3b562SBarry Smith baij->ht_total_ct += total_ct; 610abf3b562SBarry Smith baij->ht_insert_ct += insert_ct; 61176bd3646SJed Brown } 6120bdbc534SSatish Balay PetscFunctionReturn(0); 6130bdbc534SSatish Balay } 614133cdb44SSatish Balay 615b24ad042SBarry Smith PetscErrorCode MatGetValues_MPIBAIJ(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[]) 616d6de1c52SSatish Balay { 617d6de1c52SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 618d0f46423SBarry Smith PetscInt bs = mat->rmap->bs,i,j,bsrstart = mat->rmap->rstart,bsrend = mat->rmap->rend; 619d0f46423SBarry Smith PetscInt bscstart = mat->cmap->rstart,bscend = mat->cmap->rend,row,col,data; 620d6de1c52SSatish Balay 621133cdb44SSatish Balay PetscFunctionBegin; 622d6de1c52SSatish Balay for (i=0; i<m; i++) { 62354c59aa7SJacob Faibussowitsch if (idxm[i] < 0) continue; /* negative row */ 62454c59aa7SJacob Faibussowitsch PetscCheck(idxm[i] < mat->rmap->N,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT,idxm[i],mat->rmap->N-1); 625d6de1c52SSatish Balay if (idxm[i] >= bsrstart && idxm[i] < bsrend) { 626d6de1c52SSatish Balay row = idxm[i] - bsrstart; 627d6de1c52SSatish Balay for (j=0; j<n; j++) { 62854c59aa7SJacob Faibussowitsch if (idxn[j] < 0) continue; /* negative column */ 62954c59aa7SJacob Faibussowitsch PetscCheck(idxn[j] < mat->cmap->N,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT,idxn[j],mat->cmap->N-1); 630d6de1c52SSatish Balay if (idxn[j] >= bscstart && idxn[j] < bscend) { 631d6de1c52SSatish Balay col = idxn[j] - bscstart; 6329566063dSJacob Faibussowitsch PetscCall(MatGetValues_SeqBAIJ(baij->A,1,&row,1,&col,v+i*n+j)); 633d64ed03dSBarry Smith } else { 634905e6a2fSBarry Smith if (!baij->colmap) { 6359566063dSJacob Faibussowitsch PetscCall(MatCreateColmap_MPIBAIJ_Private(mat)); 636905e6a2fSBarry Smith } 637aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 6389566063dSJacob Faibussowitsch PetscCall(PetscTableFind(baij->colmap,idxn[j]/bs+1,&data)); 639fa46199cSSatish Balay data--; 64048e59246SSatish Balay #else 64148e59246SSatish Balay data = baij->colmap[idxn[j]/bs]-1; 64248e59246SSatish Balay #endif 64348e59246SSatish Balay if ((data < 0) || (baij->garray[data/bs] != idxn[j]/bs)) *(v+i*n+j) = 0.0; 644d9d09a02SSatish Balay else { 64548e59246SSatish Balay col = data + idxn[j]%bs; 6469566063dSJacob Faibussowitsch PetscCall(MatGetValues_SeqBAIJ(baij->B,1,&row,1,&col,v+i*n+j)); 647d6de1c52SSatish Balay } 648d6de1c52SSatish Balay } 649d6de1c52SSatish Balay } 650f23aa3ddSBarry Smith } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local values currently supported"); 651d6de1c52SSatish Balay } 6523a40ed3dSBarry Smith PetscFunctionReturn(0); 653d6de1c52SSatish Balay } 654d6de1c52SSatish Balay 655dfbe8321SBarry Smith PetscErrorCode MatNorm_MPIBAIJ(Mat mat,NormType type,PetscReal *nrm) 656d6de1c52SSatish Balay { 657d6de1c52SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 658d6de1c52SSatish Balay Mat_SeqBAIJ *amat = (Mat_SeqBAIJ*)baij->A->data,*bmat = (Mat_SeqBAIJ*)baij->B->data; 659d0f46423SBarry Smith PetscInt i,j,bs2=baij->bs2,bs=baij->A->rmap->bs,nz,row,col; 660329f5518SBarry Smith PetscReal sum = 0.0; 6613eda8832SBarry Smith MatScalar *v; 662d6de1c52SSatish Balay 663d64ed03dSBarry Smith PetscFunctionBegin; 664d6de1c52SSatish Balay if (baij->size == 1) { 6659566063dSJacob Faibussowitsch PetscCall(MatNorm(baij->A,type,nrm)); 666d6de1c52SSatish Balay } else { 667d6de1c52SSatish Balay if (type == NORM_FROBENIUS) { 668d6de1c52SSatish Balay v = amat->a; 6698a62d963SHong Zhang nz = amat->nz*bs2; 6708a62d963SHong Zhang for (i=0; i<nz; i++) { 671329f5518SBarry Smith sum += PetscRealPart(PetscConj(*v)*(*v)); v++; 672d6de1c52SSatish Balay } 673d6de1c52SSatish Balay v = bmat->a; 6748a62d963SHong Zhang nz = bmat->nz*bs2; 6758a62d963SHong Zhang for (i=0; i<nz; i++) { 676329f5518SBarry Smith sum += PetscRealPart(PetscConj(*v)*(*v)); v++; 677d6de1c52SSatish Balay } 6781c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&sum,nrm,1,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)mat))); 6798f1a2a5eSBarry Smith *nrm = PetscSqrtReal(*nrm); 6808a62d963SHong Zhang } else if (type == NORM_1) { /* max column sum */ 6818a62d963SHong Zhang PetscReal *tmp,*tmp2; 682899cda47SBarry Smith PetscInt *jj,*garray=baij->garray,cstart=baij->rstartbs; 6839566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(mat->cmap->N,&tmp)); 6849566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(mat->cmap->N,&tmp2)); 6858a62d963SHong Zhang v = amat->a; jj = amat->j; 6868a62d963SHong Zhang for (i=0; i<amat->nz; i++) { 6878a62d963SHong Zhang for (j=0; j<bs; j++) { 6888a62d963SHong Zhang col = bs*(cstart + *jj) + j; /* column index */ 6898a62d963SHong Zhang for (row=0; row<bs; row++) { 6908a62d963SHong Zhang tmp[col] += PetscAbsScalar(*v); v++; 6918a62d963SHong Zhang } 6928a62d963SHong Zhang } 6938a62d963SHong Zhang jj++; 6948a62d963SHong Zhang } 6958a62d963SHong Zhang v = bmat->a; jj = bmat->j; 6968a62d963SHong Zhang for (i=0; i<bmat->nz; i++) { 6978a62d963SHong Zhang for (j=0; j<bs; j++) { 6988a62d963SHong Zhang col = bs*garray[*jj] + j; 6998a62d963SHong Zhang for (row=0; row<bs; row++) { 7008a62d963SHong Zhang tmp[col] += PetscAbsScalar(*v); v++; 7018a62d963SHong Zhang } 7028a62d963SHong Zhang } 7038a62d963SHong Zhang jj++; 7048a62d963SHong Zhang } 7051c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(tmp,tmp2,mat->cmap->N,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)mat))); 7068a62d963SHong Zhang *nrm = 0.0; 707d0f46423SBarry Smith for (j=0; j<mat->cmap->N; j++) { 7088a62d963SHong Zhang if (tmp2[j] > *nrm) *nrm = tmp2[j]; 7098a62d963SHong Zhang } 7109566063dSJacob Faibussowitsch PetscCall(PetscFree(tmp)); 7119566063dSJacob Faibussowitsch PetscCall(PetscFree(tmp2)); 7128a62d963SHong Zhang } else if (type == NORM_INFINITY) { /* max row sum */ 713577dd1f9SKris Buschelman PetscReal *sums; 7149566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(bs,&sums)); 7158a62d963SHong Zhang sum = 0.0; 7168a62d963SHong Zhang for (j=0; j<amat->mbs; j++) { 7178a62d963SHong Zhang for (row=0; row<bs; row++) sums[row] = 0.0; 7188a62d963SHong Zhang v = amat->a + bs2*amat->i[j]; 7198a62d963SHong Zhang nz = amat->i[j+1]-amat->i[j]; 7208a62d963SHong Zhang for (i=0; i<nz; i++) { 7218a62d963SHong Zhang for (col=0; col<bs; col++) { 7228a62d963SHong Zhang for (row=0; row<bs; row++) { 7238a62d963SHong Zhang sums[row] += PetscAbsScalar(*v); v++; 7248a62d963SHong Zhang } 7258a62d963SHong Zhang } 7268a62d963SHong Zhang } 7278a62d963SHong Zhang v = bmat->a + bs2*bmat->i[j]; 7288a62d963SHong Zhang nz = bmat->i[j+1]-bmat->i[j]; 7298a62d963SHong Zhang for (i=0; i<nz; i++) { 7308a62d963SHong Zhang for (col=0; col<bs; col++) { 7318a62d963SHong Zhang for (row=0; row<bs; row++) { 7328a62d963SHong Zhang sums[row] += PetscAbsScalar(*v); v++; 7338a62d963SHong Zhang } 7348a62d963SHong Zhang } 7358a62d963SHong Zhang } 7368a62d963SHong Zhang for (row=0; row<bs; row++) { 7378a62d963SHong Zhang if (sums[row] > sum) sum = sums[row]; 7388a62d963SHong Zhang } 7398a62d963SHong Zhang } 7401c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&sum,nrm,1,MPIU_REAL,MPIU_MAX,PetscObjectComm((PetscObject)mat))); 7419566063dSJacob Faibussowitsch PetscCall(PetscFree(sums)); 742ce94432eSBarry Smith } else SETERRQ(PetscObjectComm((PetscObject)mat),PETSC_ERR_SUP,"No support for this norm yet"); 743d64ed03dSBarry Smith } 7443a40ed3dSBarry Smith PetscFunctionReturn(0); 745d6de1c52SSatish Balay } 74657b952d6SSatish Balay 747fef45726SSatish Balay /* 748fef45726SSatish Balay Creates the hash table, and sets the table 749fef45726SSatish Balay This table is created only once. 750fef45726SSatish Balay If new entried need to be added to the matrix 751fef45726SSatish Balay then the hash table has to be destroyed and 752fef45726SSatish Balay recreated. 753fef45726SSatish Balay */ 754dfbe8321SBarry Smith PetscErrorCode MatCreateHashTable_MPIBAIJ_Private(Mat mat,PetscReal factor) 755596b8d2eSBarry Smith { 756596b8d2eSBarry Smith Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 757596b8d2eSBarry Smith Mat A = baij->A,B=baij->B; 758596b8d2eSBarry Smith Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data,*b=(Mat_SeqBAIJ*)B->data; 759b24ad042SBarry Smith PetscInt i,j,k,nz=a->nz+b->nz,h1,*ai=a->i,*aj=a->j,*bi=b->i,*bj=b->j; 760fca92195SBarry Smith PetscInt ht_size,bs2=baij->bs2,rstart=baij->rstartbs; 761899cda47SBarry Smith PetscInt cstart=baij->cstartbs,*garray=baij->garray,row,col,Nbs=baij->Nbs; 762b24ad042SBarry Smith PetscInt *HT,key; 7633eda8832SBarry Smith MatScalar **HD; 764329f5518SBarry Smith PetscReal tmp; 7656cf91177SBarry Smith #if defined(PETSC_USE_INFO) 766b24ad042SBarry Smith PetscInt ct=0,max=0; 7674a15367fSSatish Balay #endif 768fef45726SSatish Balay 769d64ed03dSBarry Smith PetscFunctionBegin; 770fca92195SBarry Smith if (baij->ht) PetscFunctionReturn(0); 771fef45726SSatish Balay 772fca92195SBarry Smith baij->ht_size = (PetscInt)(factor*nz); 773fca92195SBarry Smith ht_size = baij->ht_size; 7740bdbc534SSatish Balay 775fef45726SSatish Balay /* Allocate Memory for Hash Table */ 7769566063dSJacob Faibussowitsch PetscCall(PetscCalloc2(ht_size,&baij->hd,ht_size,&baij->ht)); 777b9e4cc15SSatish Balay HD = baij->hd; 778a07cd24cSSatish Balay HT = baij->ht; 779b9e4cc15SSatish Balay 780596b8d2eSBarry Smith /* Loop Over A */ 7810bdbc534SSatish Balay for (i=0; i<a->mbs; i++) { 782596b8d2eSBarry Smith for (j=ai[i]; j<ai[i+1]; j++) { 7830bdbc534SSatish Balay row = i+rstart; 7840bdbc534SSatish Balay col = aj[j]+cstart; 785596b8d2eSBarry Smith 786187ce0cbSSatish Balay key = row*Nbs + col + 1; 787fca92195SBarry Smith h1 = HASH(ht_size,key,tmp); 788fca92195SBarry Smith for (k=0; k<ht_size; k++) { 789fca92195SBarry Smith if (!HT[(h1+k)%ht_size]) { 790fca92195SBarry Smith HT[(h1+k)%ht_size] = key; 791fca92195SBarry Smith HD[(h1+k)%ht_size] = a->a + j*bs2; 792596b8d2eSBarry Smith break; 7936cf91177SBarry Smith #if defined(PETSC_USE_INFO) 794187ce0cbSSatish Balay } else { 795187ce0cbSSatish Balay ct++; 796187ce0cbSSatish Balay #endif 797596b8d2eSBarry Smith } 798187ce0cbSSatish Balay } 7996cf91177SBarry Smith #if defined(PETSC_USE_INFO) 800187ce0cbSSatish Balay if (k> max) max = k; 801187ce0cbSSatish Balay #endif 802596b8d2eSBarry Smith } 803596b8d2eSBarry Smith } 804596b8d2eSBarry Smith /* Loop Over B */ 8050bdbc534SSatish Balay for (i=0; i<b->mbs; i++) { 806596b8d2eSBarry Smith for (j=bi[i]; j<bi[i+1]; j++) { 8070bdbc534SSatish Balay row = i+rstart; 8080bdbc534SSatish Balay col = garray[bj[j]]; 809187ce0cbSSatish Balay key = row*Nbs + col + 1; 810fca92195SBarry Smith h1 = HASH(ht_size,key,tmp); 811fca92195SBarry Smith for (k=0; k<ht_size; k++) { 812fca92195SBarry Smith if (!HT[(h1+k)%ht_size]) { 813fca92195SBarry Smith HT[(h1+k)%ht_size] = key; 814fca92195SBarry Smith HD[(h1+k)%ht_size] = b->a + j*bs2; 815596b8d2eSBarry Smith break; 8166cf91177SBarry Smith #if defined(PETSC_USE_INFO) 817187ce0cbSSatish Balay } else { 818187ce0cbSSatish Balay ct++; 819187ce0cbSSatish Balay #endif 820596b8d2eSBarry Smith } 821187ce0cbSSatish Balay } 8226cf91177SBarry Smith #if defined(PETSC_USE_INFO) 823187ce0cbSSatish Balay if (k> max) max = k; 824187ce0cbSSatish Balay #endif 825596b8d2eSBarry Smith } 826596b8d2eSBarry Smith } 827596b8d2eSBarry Smith 828596b8d2eSBarry Smith /* Print Summary */ 8296cf91177SBarry Smith #if defined(PETSC_USE_INFO) 830fca92195SBarry Smith for (i=0,j=0; i<ht_size; i++) { 83126fbe8dcSKarl Rupp if (HT[i]) j++; 832c38d4ed2SBarry Smith } 8339566063dSJacob Faibussowitsch PetscCall(PetscInfo(mat,"Average Search = %5.2g,max search = %" PetscInt_FMT "\n",(!j) ? (double)0.0:(double)(((PetscReal)(ct+j))/(double)j),max)); 834187ce0cbSSatish Balay #endif 8353a40ed3dSBarry Smith PetscFunctionReturn(0); 836596b8d2eSBarry Smith } 83757b952d6SSatish Balay 838dfbe8321SBarry Smith PetscErrorCode MatAssemblyBegin_MPIBAIJ(Mat mat,MatAssemblyType mode) 839bbb85fb3SSatish Balay { 840bbb85fb3SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 841b24ad042SBarry Smith PetscInt nstash,reallocs; 842bbb85fb3SSatish Balay 843bbb85fb3SSatish Balay PetscFunctionBegin; 84426fbe8dcSKarl Rupp if (baij->donotstash || mat->nooffprocentries) PetscFunctionReturn(0); 845bbb85fb3SSatish Balay 8469566063dSJacob Faibussowitsch PetscCall(MatStashScatterBegin_Private(mat,&mat->stash,mat->rmap->range)); 8479566063dSJacob Faibussowitsch PetscCall(MatStashScatterBegin_Private(mat,&mat->bstash,baij->rangebs)); 8489566063dSJacob Faibussowitsch PetscCall(MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs)); 8499566063dSJacob Faibussowitsch PetscCall(PetscInfo(mat,"Stash has %" PetscInt_FMT " entries,uses %" PetscInt_FMT " mallocs.\n",nstash,reallocs)); 8509566063dSJacob Faibussowitsch PetscCall(MatStashGetInfo_Private(&mat->bstash,&nstash,&reallocs)); 8519566063dSJacob Faibussowitsch PetscCall(PetscInfo(mat,"Block-Stash has %" PetscInt_FMT " entries, uses %" PetscInt_FMT " mallocs.\n",nstash,reallocs)); 852bbb85fb3SSatish Balay PetscFunctionReturn(0); 853bbb85fb3SSatish Balay } 854bbb85fb3SSatish Balay 855dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_MPIBAIJ(Mat mat,MatAssemblyType mode) 856bbb85fb3SSatish Balay { 857bbb85fb3SSatish Balay Mat_MPIBAIJ *baij=(Mat_MPIBAIJ*)mat->data; 85891c97fd4SSatish Balay Mat_SeqBAIJ *a =(Mat_SeqBAIJ*)baij->A->data; 859b24ad042SBarry Smith PetscInt i,j,rstart,ncols,flg,bs2=baij->bs2; 860e44c0bd4SBarry Smith PetscInt *row,*col; 861ace3abfcSBarry Smith PetscBool r1,r2,r3,other_disassembled; 8623eda8832SBarry Smith MatScalar *val; 863b24ad042SBarry Smith PetscMPIInt n; 864bbb85fb3SSatish Balay 865bbb85fb3SSatish Balay PetscFunctionBegin; 8665fd66863SKarl Rupp /* do not use 'b=(Mat_SeqBAIJ*)baij->B->data' as B can be reset in disassembly */ 8674cb17eb5SBarry Smith if (!baij->donotstash && !mat->nooffprocentries) { 868a2d1c673SSatish Balay while (1) { 8699566063dSJacob Faibussowitsch PetscCall(MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg)); 870a2d1c673SSatish Balay if (!flg) break; 871a2d1c673SSatish Balay 872bbb85fb3SSatish Balay for (i=0; i<n;) { 873bbb85fb3SSatish Balay /* Now identify the consecutive vals belonging to the same row */ 87426fbe8dcSKarl Rupp for (j=i,rstart=row[j]; j<n; j++) { 87526fbe8dcSKarl Rupp if (row[j] != rstart) break; 87626fbe8dcSKarl Rupp } 877bbb85fb3SSatish Balay if (j < n) ncols = j-i; 878bbb85fb3SSatish Balay else ncols = n-i; 879bbb85fb3SSatish Balay /* Now assemble all these values with a single function call */ 8809566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPIBAIJ(mat,1,row+i,ncols,col+i,val+i,mat->insertmode)); 881bbb85fb3SSatish Balay i = j; 882bbb85fb3SSatish Balay } 883bbb85fb3SSatish Balay } 8849566063dSJacob Faibussowitsch PetscCall(MatStashScatterEnd_Private(&mat->stash)); 885a2d1c673SSatish Balay /* Now process the block-stash. Since the values are stashed column-oriented, 886a2d1c673SSatish Balay set the roworiented flag to column oriented, and after MatSetValues() 887a2d1c673SSatish Balay restore the original flags */ 888a2d1c673SSatish Balay r1 = baij->roworiented; 889a2d1c673SSatish Balay r2 = a->roworiented; 89091c97fd4SSatish Balay r3 = ((Mat_SeqBAIJ*)baij->B->data)->roworiented; 89126fbe8dcSKarl Rupp 8927c922b88SBarry Smith baij->roworiented = PETSC_FALSE; 8937c922b88SBarry Smith a->roworiented = PETSC_FALSE; 89426fbe8dcSKarl Rupp 89591c97fd4SSatish Balay (((Mat_SeqBAIJ*)baij->B->data))->roworiented = PETSC_FALSE; /* b->roworiented */ 896a2d1c673SSatish Balay while (1) { 8979566063dSJacob Faibussowitsch PetscCall(MatStashScatterGetMesg_Private(&mat->bstash,&n,&row,&col,&val,&flg)); 898a2d1c673SSatish Balay if (!flg) break; 899a2d1c673SSatish Balay 900a2d1c673SSatish Balay for (i=0; i<n;) { 901a2d1c673SSatish Balay /* Now identify the consecutive vals belonging to the same row */ 90226fbe8dcSKarl Rupp for (j=i,rstart=row[j]; j<n; j++) { 90326fbe8dcSKarl Rupp if (row[j] != rstart) break; 90426fbe8dcSKarl Rupp } 905a2d1c673SSatish Balay if (j < n) ncols = j-i; 906a2d1c673SSatish Balay else ncols = n-i; 9079566063dSJacob Faibussowitsch PetscCall(MatSetValuesBlocked_MPIBAIJ(mat,1,row+i,ncols,col+i,val+i*bs2,mat->insertmode)); 908a2d1c673SSatish Balay i = j; 909a2d1c673SSatish Balay } 910a2d1c673SSatish Balay } 9119566063dSJacob Faibussowitsch PetscCall(MatStashScatterEnd_Private(&mat->bstash)); 91226fbe8dcSKarl Rupp 913a2d1c673SSatish Balay baij->roworiented = r1; 914a2d1c673SSatish Balay a->roworiented = r2; 91526fbe8dcSKarl Rupp 91691c97fd4SSatish Balay ((Mat_SeqBAIJ*)baij->B->data)->roworiented = r3; /* b->roworiented */ 917bbb85fb3SSatish Balay } 918bbb85fb3SSatish Balay 9199566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(baij->A,mode)); 9209566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(baij->A,mode)); 921bbb85fb3SSatish Balay 922bbb85fb3SSatish Balay /* determine if any processor has disassembled, if so we must 9236aad120cSJose E. Roman also disassemble ourselves, in order that we may reassemble. */ 924bbb85fb3SSatish Balay /* 925bbb85fb3SSatish Balay if nonzero structure of submatrix B cannot change then we know that 926bbb85fb3SSatish Balay no processor disassembled thus we can skip this stuff 927bbb85fb3SSatish Balay */ 928bbb85fb3SSatish Balay if (!((Mat_SeqBAIJ*)baij->B->data)->nonew) { 9291c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&mat->was_assembled,&other_disassembled,1,MPIU_BOOL,MPI_PROD,PetscObjectComm((PetscObject)mat))); 930bbb85fb3SSatish Balay if (mat->was_assembled && !other_disassembled) { 9319566063dSJacob Faibussowitsch PetscCall(MatDisAssemble_MPIBAIJ(mat)); 932bbb85fb3SSatish Balay } 933bbb85fb3SSatish Balay } 934bbb85fb3SSatish Balay 935bbb85fb3SSatish Balay if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) { 9369566063dSJacob Faibussowitsch PetscCall(MatSetUpMultiply_MPIBAIJ(mat)); 937bbb85fb3SSatish Balay } 9389566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(baij->B,mode)); 9399566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(baij->B,mode)); 940bbb85fb3SSatish Balay 9416cf91177SBarry Smith #if defined(PETSC_USE_INFO) 942bbb85fb3SSatish Balay if (baij->ht && mode== MAT_FINAL_ASSEMBLY) { 9439566063dSJacob Faibussowitsch PetscCall(PetscInfo(mat,"Average Hash Table Search in MatSetValues = %5.2f\n",(double)((PetscReal)baij->ht_total_ct)/baij->ht_insert_ct)); 94426fbe8dcSKarl Rupp 945bbb85fb3SSatish Balay baij->ht_total_ct = 0; 946bbb85fb3SSatish Balay baij->ht_insert_ct = 0; 947bbb85fb3SSatish Balay } 948bbb85fb3SSatish Balay #endif 949bbb85fb3SSatish Balay if (baij->ht_flag && !baij->ht && mode == MAT_FINAL_ASSEMBLY) { 9509566063dSJacob Faibussowitsch PetscCall(MatCreateHashTable_MPIBAIJ_Private(mat,baij->ht_fact)); 95126fbe8dcSKarl Rupp 952bbb85fb3SSatish Balay mat->ops->setvalues = MatSetValues_MPIBAIJ_HT; 953bbb85fb3SSatish Balay mat->ops->setvaluesblocked = MatSetValuesBlocked_MPIBAIJ_HT; 954bbb85fb3SSatish Balay } 955bbb85fb3SSatish Balay 9569566063dSJacob Faibussowitsch PetscCall(PetscFree2(baij->rowvalues,baij->rowindices)); 95726fbe8dcSKarl Rupp 958f4259b30SLisandro Dalcin baij->rowvalues = NULL; 9594f9cfa9eSBarry Smith 9604f9cfa9eSBarry Smith /* if no new nonzero locations are allowed in matrix then only set the matrix state the first time through */ 9614f9cfa9eSBarry Smith if ((!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) || !((Mat_SeqBAIJ*)(baij->A->data))->nonew) { 962e56f5c9eSBarry Smith PetscObjectState state = baij->A->nonzerostate + baij->B->nonzerostate; 9631c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&state,&mat->nonzerostate,1,MPIU_INT64,MPI_SUM,PetscObjectComm((PetscObject)mat))); 964e56f5c9eSBarry Smith } 965bbb85fb3SSatish Balay PetscFunctionReturn(0); 966bbb85fb3SSatish Balay } 96757b952d6SSatish Balay 9687da1fb6eSBarry Smith extern PetscErrorCode MatView_SeqBAIJ(Mat,PetscViewer); 9699804daf3SBarry Smith #include <petscdraw.h> 9706849ba73SBarry Smith static PetscErrorCode MatView_MPIBAIJ_ASCIIorDraworSocket(Mat mat,PetscViewer viewer) 97157b952d6SSatish Balay { 97257b952d6SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 9737da1fb6eSBarry Smith PetscMPIInt rank = baij->rank; 974d0f46423SBarry Smith PetscInt bs = mat->rmap->bs; 975ace3abfcSBarry Smith PetscBool iascii,isdraw; 976b0a32e0cSBarry Smith PetscViewer sviewer; 977f3ef73ceSBarry Smith PetscViewerFormat format; 97857b952d6SSatish Balay 979d64ed03dSBarry Smith PetscFunctionBegin; 9809566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii)); 9819566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw)); 98232077d6dSBarry Smith if (iascii) { 9839566063dSJacob Faibussowitsch PetscCall(PetscViewerGetFormat(viewer,&format)); 984456192e2SBarry Smith if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 9854e220ebcSLois Curfman McInnes MatInfo info; 9869566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)mat),&rank)); 9879566063dSJacob Faibussowitsch PetscCall(MatGetInfo(mat,MAT_LOCAL,&info)); 9889566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPushSynchronized(viewer)); 9899566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Local rows %" PetscInt_FMT " nz %" PetscInt_FMT " nz alloced %" PetscInt_FMT " bs %" PetscInt_FMT " mem %g\n", 9905f80ce2aSJacob Faibussowitsch rank,mat->rmap->n,(PetscInt)info.nz_used,(PetscInt)info.nz_allocated,mat->rmap->bs,(double)info.memory)); 9919566063dSJacob Faibussowitsch PetscCall(MatGetInfo(baij->A,MAT_LOCAL,&info)); 9929566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIISynchronizedPrintf(viewer,"[%d] on-diagonal part: nz %" PetscInt_FMT " \n",rank,(PetscInt)info.nz_used)); 9939566063dSJacob Faibussowitsch PetscCall(MatGetInfo(baij->B,MAT_LOCAL,&info)); 9949566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIISynchronizedPrintf(viewer,"[%d] off-diagonal part: nz %" PetscInt_FMT " \n",rank,(PetscInt)info.nz_used)); 9959566063dSJacob Faibussowitsch PetscCall(PetscViewerFlush(viewer)); 9969566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPopSynchronized(viewer)); 9979566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer,"Information on VecScatter used in matrix-vector product: \n")); 9989566063dSJacob Faibussowitsch PetscCall(VecScatterView(baij->Mvctx,viewer)); 9993a40ed3dSBarry Smith PetscFunctionReturn(0); 1000fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_INFO) { 10019566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer," block size is %" PetscInt_FMT "\n",bs)); 10023a40ed3dSBarry Smith PetscFunctionReturn(0); 100304929863SHong Zhang } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) { 100404929863SHong Zhang PetscFunctionReturn(0); 100557b952d6SSatish Balay } 100657b952d6SSatish Balay } 100757b952d6SSatish Balay 10080f5bd95cSBarry Smith if (isdraw) { 1009b0a32e0cSBarry Smith PetscDraw draw; 1010ace3abfcSBarry Smith PetscBool isnull; 10119566063dSJacob Faibussowitsch PetscCall(PetscViewerDrawGetDraw(viewer,0,&draw)); 10129566063dSJacob Faibussowitsch PetscCall(PetscDrawIsNull(draw,&isnull)); 101345f3bb6eSLisandro Dalcin if (isnull) PetscFunctionReturn(0); 101457b952d6SSatish Balay } 101557b952d6SSatish Balay 10167da1fb6eSBarry Smith { 101757b952d6SSatish Balay /* assemble the entire matrix onto first processor. */ 101857b952d6SSatish Balay Mat A; 101957b952d6SSatish Balay Mat_SeqBAIJ *Aloc; 1020d0f46423SBarry Smith PetscInt M = mat->rmap->N,N = mat->cmap->N,*ai,*aj,col,i,j,k,*rvals,mbs = baij->mbs; 10213eda8832SBarry Smith MatScalar *a; 10223e219373SBarry Smith const char *matname; 102357b952d6SSatish Balay 1024f204ca49SKris Buschelman /* Here we are creating a temporary matrix, so will assume MPIBAIJ is acceptable */ 1025f204ca49SKris Buschelman /* Perhaps this should be the type of mat? */ 10269566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)mat),&A)); 1027dd400576SPatrick Sanan if (rank == 0) { 10289566063dSJacob Faibussowitsch PetscCall(MatSetSizes(A,M,N,M,N)); 1029d64ed03dSBarry Smith } else { 10309566063dSJacob Faibussowitsch PetscCall(MatSetSizes(A,0,0,M,N)); 103157b952d6SSatish Balay } 10329566063dSJacob Faibussowitsch PetscCall(MatSetType(A,MATMPIBAIJ)); 10339566063dSJacob Faibussowitsch PetscCall(MatMPIBAIJSetPreallocation(A,mat->rmap->bs,0,NULL,0,NULL)); 10349566063dSJacob Faibussowitsch PetscCall(MatSetOption(A,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_FALSE)); 10359566063dSJacob Faibussowitsch PetscCall(PetscLogObjectParent((PetscObject)mat,(PetscObject)A)); 103657b952d6SSatish Balay 103757b952d6SSatish Balay /* copy over the A part */ 103857b952d6SSatish Balay Aloc = (Mat_SeqBAIJ*)baij->A->data; 103957b952d6SSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 10409566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(bs,&rvals)); 104157b952d6SSatish Balay 104257b952d6SSatish Balay for (i=0; i<mbs; i++) { 1043899cda47SBarry Smith rvals[0] = bs*(baij->rstartbs + i); 104426fbe8dcSKarl Rupp for (j=1; j<bs; j++) rvals[j] = rvals[j-1] + 1; 104557b952d6SSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 1046899cda47SBarry Smith col = (baij->cstartbs+aj[j])*bs; 104757b952d6SSatish Balay for (k=0; k<bs; k++) { 10489566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPIBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES)); 1049cee3aa6bSSatish Balay col++; a += bs; 105057b952d6SSatish Balay } 105157b952d6SSatish Balay } 105257b952d6SSatish Balay } 105357b952d6SSatish Balay /* copy over the B part */ 105457b952d6SSatish Balay Aloc = (Mat_SeqBAIJ*)baij->B->data; 105557b952d6SSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 105657b952d6SSatish Balay for (i=0; i<mbs; i++) { 1057899cda47SBarry Smith rvals[0] = bs*(baij->rstartbs + i); 105826fbe8dcSKarl Rupp for (j=1; j<bs; j++) rvals[j] = rvals[j-1] + 1; 105957b952d6SSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 106057b952d6SSatish Balay col = baij->garray[aj[j]]*bs; 106157b952d6SSatish Balay for (k=0; k<bs; k++) { 10629566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPIBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES)); 1063cee3aa6bSSatish Balay col++; a += bs; 106457b952d6SSatish Balay } 106557b952d6SSatish Balay } 106657b952d6SSatish Balay } 10679566063dSJacob Faibussowitsch PetscCall(PetscFree(rvals)); 10689566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY)); 10699566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY)); 107055843e3eSBarry Smith /* 107155843e3eSBarry Smith Everyone has to call to draw the matrix since the graphics waits are 1072b0a32e0cSBarry Smith synchronized across all processors that share the PetscDraw object 107355843e3eSBarry Smith */ 10749566063dSJacob Faibussowitsch PetscCall(PetscViewerGetSubViewer(viewer,PETSC_COMM_SELF,&sviewer)); 10759566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)mat,&matname)); 1076dd400576SPatrick Sanan if (rank == 0) { 10779566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)((Mat_MPIBAIJ*)(A->data))->A,matname)); 10789566063dSJacob Faibussowitsch PetscCall(MatView_SeqBAIJ(((Mat_MPIBAIJ*)(A->data))->A,sviewer)); 107957b952d6SSatish Balay } 10809566063dSJacob Faibussowitsch PetscCall(PetscViewerRestoreSubViewer(viewer,PETSC_COMM_SELF,&sviewer)); 10819566063dSJacob Faibussowitsch PetscCall(PetscViewerFlush(viewer)); 10829566063dSJacob Faibussowitsch PetscCall(MatDestroy(&A)); 108357b952d6SSatish Balay } 10843a40ed3dSBarry Smith PetscFunctionReturn(0); 108557b952d6SSatish Balay } 108657b952d6SSatish Balay 1087618cc2edSLisandro Dalcin /* Used for both MPIBAIJ and MPISBAIJ matrices */ 1088b51a4376SLisandro Dalcin PetscErrorCode MatView_MPIBAIJ_Binary(Mat mat,PetscViewer viewer) 1089660746e0SBarry Smith { 1090b51a4376SLisandro Dalcin Mat_MPIBAIJ *aij = (Mat_MPIBAIJ*)mat->data; 1091b51a4376SLisandro Dalcin Mat_SeqBAIJ *A = (Mat_SeqBAIJ*)aij->A->data; 1092b51a4376SLisandro Dalcin Mat_SeqBAIJ *B = (Mat_SeqBAIJ*)aij->B->data; 1093b51a4376SLisandro Dalcin const PetscInt *garray = aij->garray; 1094b51a4376SLisandro Dalcin PetscInt header[4],M,N,m,rs,cs,bs,nz,cnt,i,j,ja,jb,k,l; 1095b51a4376SLisandro Dalcin PetscInt *rowlens,*colidxs; 1096b51a4376SLisandro Dalcin PetscScalar *matvals; 1097660746e0SBarry Smith 1098660746e0SBarry Smith PetscFunctionBegin; 10999566063dSJacob Faibussowitsch PetscCall(PetscViewerSetUp(viewer)); 1100b51a4376SLisandro Dalcin 1101b51a4376SLisandro Dalcin M = mat->rmap->N; 1102b51a4376SLisandro Dalcin N = mat->cmap->N; 1103b51a4376SLisandro Dalcin m = mat->rmap->n; 1104b51a4376SLisandro Dalcin rs = mat->rmap->rstart; 1105b51a4376SLisandro Dalcin cs = mat->cmap->rstart; 1106b51a4376SLisandro Dalcin bs = mat->rmap->bs; 1107b51a4376SLisandro Dalcin nz = bs*bs*(A->nz + B->nz); 1108b51a4376SLisandro Dalcin 1109b51a4376SLisandro Dalcin /* write matrix header */ 1110660746e0SBarry Smith header[0] = MAT_FILE_CLASSID; 1111b51a4376SLisandro Dalcin header[1] = M; header[2] = N; header[3] = nz; 11129566063dSJacob Faibussowitsch PetscCallMPI(MPI_Reduce(&nz,&header[3],1,MPIU_INT,MPI_SUM,0,PetscObjectComm((PetscObject)mat))); 11139566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryWrite(viewer,header,4,PETSC_INT)); 1114660746e0SBarry Smith 1115b51a4376SLisandro Dalcin /* fill in and store row lengths */ 11169566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m,&rowlens)); 1117b51a4376SLisandro Dalcin for (cnt=0, i=0; i<A->mbs; i++) 1118b51a4376SLisandro Dalcin for (j=0; j<bs; j++) 1119b51a4376SLisandro Dalcin rowlens[cnt++] = bs*(A->i[i+1] - A->i[i] + B->i[i+1] - B->i[i]); 11209566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryWriteAll(viewer,rowlens,m,rs,M,PETSC_INT)); 11219566063dSJacob Faibussowitsch PetscCall(PetscFree(rowlens)); 1122660746e0SBarry Smith 1123b51a4376SLisandro Dalcin /* fill in and store column indices */ 11249566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nz,&colidxs)); 1125b51a4376SLisandro Dalcin for (cnt=0, i=0; i<A->mbs; i++) { 1126b51a4376SLisandro Dalcin for (k=0; k<bs; k++) { 1127b51a4376SLisandro Dalcin for (jb=B->i[i]; jb<B->i[i+1]; jb++) { 1128b51a4376SLisandro Dalcin if (garray[B->j[jb]] > cs/bs) break; 1129b51a4376SLisandro Dalcin for (l=0; l<bs; l++) 1130b51a4376SLisandro Dalcin colidxs[cnt++] = bs*garray[B->j[jb]] + l; 1131660746e0SBarry Smith } 1132b51a4376SLisandro Dalcin for (ja=A->i[i]; ja<A->i[i+1]; ja++) 1133b51a4376SLisandro Dalcin for (l=0; l<bs; l++) 1134b51a4376SLisandro Dalcin colidxs[cnt++] = bs*A->j[ja] + l + cs; 1135b51a4376SLisandro Dalcin for (; jb<B->i[i+1]; jb++) 1136b51a4376SLisandro Dalcin for (l=0; l<bs; l++) 1137b51a4376SLisandro Dalcin colidxs[cnt++] = bs*garray[B->j[jb]] + l; 1138660746e0SBarry Smith } 1139660746e0SBarry Smith } 11405f80ce2aSJacob Faibussowitsch PetscCheck(cnt == nz,PETSC_COMM_SELF,PETSC_ERR_LIB,"Internal PETSc error: cnt = %" PetscInt_FMT " nz = %" PetscInt_FMT,cnt,nz); 11419566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryWriteAll(viewer,colidxs,nz,PETSC_DECIDE,PETSC_DECIDE,PETSC_INT)); 11429566063dSJacob Faibussowitsch PetscCall(PetscFree(colidxs)); 1143660746e0SBarry Smith 1144b51a4376SLisandro Dalcin /* fill in and store nonzero values */ 11459566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nz,&matvals)); 1146b51a4376SLisandro Dalcin for (cnt=0, i=0; i<A->mbs; i++) { 1147b51a4376SLisandro Dalcin for (k=0; k<bs; k++) { 1148b51a4376SLisandro Dalcin for (jb=B->i[i]; jb<B->i[i+1]; jb++) { 1149b51a4376SLisandro Dalcin if (garray[B->j[jb]] > cs/bs) break; 1150b51a4376SLisandro Dalcin for (l=0; l<bs; l++) 1151b51a4376SLisandro Dalcin matvals[cnt++] = B->a[bs*(bs*jb + l) + k]; 1152660746e0SBarry Smith } 1153b51a4376SLisandro Dalcin for (ja=A->i[i]; ja<A->i[i+1]; ja++) 1154b51a4376SLisandro Dalcin for (l=0; l<bs; l++) 1155b51a4376SLisandro Dalcin matvals[cnt++] = A->a[bs*(bs*ja + l) + k]; 1156b51a4376SLisandro Dalcin for (; jb<B->i[i+1]; jb++) 1157b51a4376SLisandro Dalcin for (l=0; l<bs; l++) 1158d21b9a37SPierre Jolivet matvals[cnt++] = B->a[bs*(bs*jb + l) + k]; 1159660746e0SBarry Smith } 1160b51a4376SLisandro Dalcin } 11619566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryWriteAll(viewer,matvals,nz,PETSC_DECIDE,PETSC_DECIDE,PETSC_SCALAR)); 11629566063dSJacob Faibussowitsch PetscCall(PetscFree(matvals)); 1163660746e0SBarry Smith 1164b51a4376SLisandro Dalcin /* write block size option to the viewer's .info file */ 11659566063dSJacob Faibussowitsch PetscCall(MatView_Binary_BlockSizes(mat,viewer)); 1166660746e0SBarry Smith PetscFunctionReturn(0); 1167660746e0SBarry Smith } 1168660746e0SBarry Smith 1169dfbe8321SBarry Smith PetscErrorCode MatView_MPIBAIJ(Mat mat,PetscViewer viewer) 117057b952d6SSatish Balay { 1171ace3abfcSBarry Smith PetscBool iascii,isdraw,issocket,isbinary; 117257b952d6SSatish Balay 1173d64ed03dSBarry Smith PetscFunctionBegin; 11749566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii)); 11759566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw)); 11769566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERSOCKET,&issocket)); 11779566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary)); 1178660746e0SBarry Smith if (iascii || isdraw || issocket) { 11799566063dSJacob Faibussowitsch PetscCall(MatView_MPIBAIJ_ASCIIorDraworSocket(mat,viewer)); 11801baa6e33SBarry Smith } else if (isbinary) PetscCall(MatView_MPIBAIJ_Binary(mat,viewer)); 11813a40ed3dSBarry Smith PetscFunctionReturn(0); 118257b952d6SSatish Balay } 118357b952d6SSatish Balay 1184dfbe8321SBarry Smith PetscErrorCode MatDestroy_MPIBAIJ(Mat mat) 118579bdfe76SSatish Balay { 118679bdfe76SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 118779bdfe76SSatish Balay 1188d64ed03dSBarry Smith PetscFunctionBegin; 1189aa482453SBarry Smith #if defined(PETSC_USE_LOG) 1190c0aa6a63SJacob Faibussowitsch PetscLogObjectState((PetscObject)mat,"Rows=%" PetscInt_FMT ",Cols=%" PetscInt_FMT,mat->rmap->N,mat->cmap->N); 119179bdfe76SSatish Balay #endif 11929566063dSJacob Faibussowitsch PetscCall(MatStashDestroy_Private(&mat->stash)); 11939566063dSJacob Faibussowitsch PetscCall(MatStashDestroy_Private(&mat->bstash)); 11949566063dSJacob Faibussowitsch PetscCall(MatDestroy(&baij->A)); 11959566063dSJacob Faibussowitsch PetscCall(MatDestroy(&baij->B)); 1196aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 11979566063dSJacob Faibussowitsch PetscCall(PetscTableDestroy(&baij->colmap)); 119848e59246SSatish Balay #else 11999566063dSJacob Faibussowitsch PetscCall(PetscFree(baij->colmap)); 120048e59246SSatish Balay #endif 12019566063dSJacob Faibussowitsch PetscCall(PetscFree(baij->garray)); 12029566063dSJacob Faibussowitsch PetscCall(VecDestroy(&baij->lvec)); 12039566063dSJacob Faibussowitsch PetscCall(VecScatterDestroy(&baij->Mvctx)); 12049566063dSJacob Faibussowitsch PetscCall(PetscFree2(baij->rowvalues,baij->rowindices)); 12059566063dSJacob Faibussowitsch PetscCall(PetscFree(baij->barray)); 12069566063dSJacob Faibussowitsch PetscCall(PetscFree2(baij->hd,baij->ht)); 12079566063dSJacob Faibussowitsch PetscCall(PetscFree(baij->rangebs)); 12089566063dSJacob Faibussowitsch PetscCall(PetscFree(mat->data)); 1209901853e0SKris Buschelman 12109566063dSJacob Faibussowitsch PetscCall(PetscObjectChangeTypeName((PetscObject)mat,NULL)); 12119566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatStoreValues_C",NULL)); 12129566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatRetrieveValues_C",NULL)); 12139566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatMPIBAIJSetPreallocation_C",NULL)); 12149566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatMPIBAIJSetPreallocationCSR_C",NULL)); 12159566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDiagonalScaleLocal_C",NULL)); 12169566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatSetHashTableFactor_C",NULL)); 12179566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpibaij_mpisbaij_C",NULL)); 12182e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpibaij_mpiadj_C",NULL)); 12192e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpibaij_mpiaij_C",NULL)); 12207ea3e4caSstefano_zampini #if defined(PETSC_HAVE_HYPRE) 12219566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpibaij_hypre_C",NULL)); 12227ea3e4caSstefano_zampini #endif 12239566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpibaij_is_C",NULL)); 12243a40ed3dSBarry Smith PetscFunctionReturn(0); 122579bdfe76SSatish Balay } 122679bdfe76SSatish Balay 1227dfbe8321SBarry Smith PetscErrorCode MatMult_MPIBAIJ(Mat A,Vec xx,Vec yy) 1228cee3aa6bSSatish Balay { 1229cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1230b24ad042SBarry Smith PetscInt nt; 1231cee3aa6bSSatish Balay 1232d64ed03dSBarry Smith PetscFunctionBegin; 12339566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(xx,&nt)); 12345f80ce2aSJacob Faibussowitsch PetscCheck(nt == A->cmap->n,PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx"); 12359566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(yy,&nt)); 12365f80ce2aSJacob Faibussowitsch PetscCheck(nt == A->rmap->n,PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible parition of A and yy"); 12379566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD)); 12389566063dSJacob Faibussowitsch PetscCall((*a->A->ops->mult)(a->A,xx,yy)); 12399566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD)); 12409566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multadd)(a->B,a->lvec,yy,yy)); 12413a40ed3dSBarry Smith PetscFunctionReturn(0); 1242cee3aa6bSSatish Balay } 1243cee3aa6bSSatish Balay 1244dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPIBAIJ(Mat A,Vec xx,Vec yy,Vec zz) 1245cee3aa6bSSatish Balay { 1246cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1247d64ed03dSBarry Smith 1248d64ed03dSBarry Smith PetscFunctionBegin; 12499566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD)); 12509566063dSJacob Faibussowitsch PetscCall((*a->A->ops->multadd)(a->A,xx,yy,zz)); 12519566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD)); 12529566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multadd)(a->B,a->lvec,zz,zz)); 12533a40ed3dSBarry Smith PetscFunctionReturn(0); 1254cee3aa6bSSatish Balay } 1255cee3aa6bSSatish Balay 1256dfbe8321SBarry Smith PetscErrorCode MatMultTranspose_MPIBAIJ(Mat A,Vec xx,Vec yy) 1257cee3aa6bSSatish Balay { 1258cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1259cee3aa6bSSatish Balay 1260d64ed03dSBarry Smith PetscFunctionBegin; 1261cee3aa6bSSatish Balay /* do nondiagonal part */ 12629566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multtranspose)(a->B,xx,a->lvec)); 1263cee3aa6bSSatish Balay /* do local part */ 12649566063dSJacob Faibussowitsch PetscCall((*a->A->ops->multtranspose)(a->A,xx,yy)); 1265e4a140f6SJunchao Zhang /* add partial results together */ 12669566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE)); 12679566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE)); 12683a40ed3dSBarry Smith PetscFunctionReturn(0); 1269cee3aa6bSSatish Balay } 1270cee3aa6bSSatish Balay 1271dfbe8321SBarry Smith PetscErrorCode MatMultTransposeAdd_MPIBAIJ(Mat A,Vec xx,Vec yy,Vec zz) 1272cee3aa6bSSatish Balay { 1273cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1274cee3aa6bSSatish Balay 1275d64ed03dSBarry Smith PetscFunctionBegin; 1276cee3aa6bSSatish Balay /* do nondiagonal part */ 12779566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multtranspose)(a->B,xx,a->lvec)); 1278cee3aa6bSSatish Balay /* do local part */ 12799566063dSJacob Faibussowitsch PetscCall((*a->A->ops->multtransposeadd)(a->A,xx,yy,zz)); 1280e4a140f6SJunchao Zhang /* add partial results together */ 12819566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE)); 12829566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE)); 12833a40ed3dSBarry Smith PetscFunctionReturn(0); 1284cee3aa6bSSatish Balay } 1285cee3aa6bSSatish Balay 1286cee3aa6bSSatish Balay /* 1287cee3aa6bSSatish Balay This only works correctly for square matrices where the subblock A->A is the 1288cee3aa6bSSatish Balay diagonal block 1289cee3aa6bSSatish Balay */ 1290dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_MPIBAIJ(Mat A,Vec v) 1291cee3aa6bSSatish Balay { 1292d64ed03dSBarry Smith PetscFunctionBegin; 12935f80ce2aSJacob Faibussowitsch PetscCheck(A->rmap->N == A->cmap->N,PETSC_COMM_SELF,PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block"); 12949566063dSJacob Faibussowitsch PetscCall(MatGetDiagonal(((Mat_MPIBAIJ*)A->data)->A,v)); 12953a40ed3dSBarry Smith PetscFunctionReturn(0); 1296cee3aa6bSSatish Balay } 1297cee3aa6bSSatish Balay 1298f4df32b1SMatthew Knepley PetscErrorCode MatScale_MPIBAIJ(Mat A,PetscScalar aa) 1299cee3aa6bSSatish Balay { 1300cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1301d64ed03dSBarry Smith 1302d64ed03dSBarry Smith PetscFunctionBegin; 13039566063dSJacob Faibussowitsch PetscCall(MatScale(a->A,aa)); 13049566063dSJacob Faibussowitsch PetscCall(MatScale(a->B,aa)); 13053a40ed3dSBarry Smith PetscFunctionReturn(0); 1306cee3aa6bSSatish Balay } 1307026e39d0SSatish Balay 1308b24ad042SBarry Smith PetscErrorCode MatGetRow_MPIBAIJ(Mat matin,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 1309acdf5bf4SSatish Balay { 1310acdf5bf4SSatish Balay Mat_MPIBAIJ *mat = (Mat_MPIBAIJ*)matin->data; 131187828ca2SBarry Smith PetscScalar *vworkA,*vworkB,**pvA,**pvB,*v_p; 1312d0f46423SBarry Smith PetscInt bs = matin->rmap->bs,bs2 = mat->bs2,i,*cworkA,*cworkB,**pcA,**pcB; 1313d0f46423SBarry Smith PetscInt nztot,nzA,nzB,lrow,brstart = matin->rmap->rstart,brend = matin->rmap->rend; 1314899cda47SBarry Smith PetscInt *cmap,*idx_p,cstart = mat->cstartbs; 1315acdf5bf4SSatish Balay 1316d64ed03dSBarry Smith PetscFunctionBegin; 13175f80ce2aSJacob Faibussowitsch PetscCheck(row >= brstart && row < brend,PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local rows"); 13185f80ce2aSJacob Faibussowitsch PetscCheck(!mat->getrowactive,PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Already active"); 1319acdf5bf4SSatish Balay mat->getrowactive = PETSC_TRUE; 1320acdf5bf4SSatish Balay 1321acdf5bf4SSatish Balay if (!mat->rowvalues && (idx || v)) { 1322acdf5bf4SSatish Balay /* 1323acdf5bf4SSatish Balay allocate enough space to hold information from the longest row. 1324acdf5bf4SSatish Balay */ 1325acdf5bf4SSatish Balay Mat_SeqBAIJ *Aa = (Mat_SeqBAIJ*)mat->A->data,*Ba = (Mat_SeqBAIJ*)mat->B->data; 1326b24ad042SBarry Smith PetscInt max = 1,mbs = mat->mbs,tmp; 1327bd16c2feSSatish Balay for (i=0; i<mbs; i++) { 1328acdf5bf4SSatish Balay tmp = Aa->i[i+1] - Aa->i[i] + Ba->i[i+1] - Ba->i[i]; 132926fbe8dcSKarl Rupp if (max < tmp) max = tmp; 1330acdf5bf4SSatish Balay } 13319566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(max*bs2,&mat->rowvalues,max*bs2,&mat->rowindices)); 1332acdf5bf4SSatish Balay } 1333d9d09a02SSatish Balay lrow = row - brstart; 1334acdf5bf4SSatish Balay 1335acdf5bf4SSatish Balay pvA = &vworkA; pcA = &cworkA; pvB = &vworkB; pcB = &cworkB; 1336f4259b30SLisandro Dalcin if (!v) {pvA = NULL; pvB = NULL;} 1337f4259b30SLisandro Dalcin if (!idx) {pcA = NULL; if (!v) pcB = NULL;} 13389566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->getrow)(mat->A,lrow,&nzA,pcA,pvA)); 13399566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->getrow)(mat->B,lrow,&nzB,pcB,pvB)); 1340acdf5bf4SSatish Balay nztot = nzA + nzB; 1341acdf5bf4SSatish Balay 1342acdf5bf4SSatish Balay cmap = mat->garray; 1343acdf5bf4SSatish Balay if (v || idx) { 1344acdf5bf4SSatish Balay if (nztot) { 1345acdf5bf4SSatish Balay /* Sort by increasing column numbers, assuming A and B already sorted */ 1346b24ad042SBarry Smith PetscInt imark = -1; 1347acdf5bf4SSatish Balay if (v) { 1348acdf5bf4SSatish Balay *v = v_p = mat->rowvalues; 1349acdf5bf4SSatish Balay for (i=0; i<nzB; i++) { 1350d9d09a02SSatish Balay if (cmap[cworkB[i]/bs] < cstart) v_p[i] = vworkB[i]; 1351acdf5bf4SSatish Balay else break; 1352acdf5bf4SSatish Balay } 1353acdf5bf4SSatish Balay imark = i; 1354acdf5bf4SSatish Balay for (i=0; i<nzA; i++) v_p[imark+i] = vworkA[i]; 1355acdf5bf4SSatish Balay for (i=imark; i<nzB; i++) v_p[nzA+i] = vworkB[i]; 1356acdf5bf4SSatish Balay } 1357acdf5bf4SSatish Balay if (idx) { 1358acdf5bf4SSatish Balay *idx = idx_p = mat->rowindices; 1359acdf5bf4SSatish Balay if (imark > -1) { 1360acdf5bf4SSatish Balay for (i=0; i<imark; i++) { 1361bd16c2feSSatish Balay idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs; 1362acdf5bf4SSatish Balay } 1363acdf5bf4SSatish Balay } else { 1364acdf5bf4SSatish Balay for (i=0; i<nzB; i++) { 136526fbe8dcSKarl Rupp if (cmap[cworkB[i]/bs] < cstart) idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs; 1366acdf5bf4SSatish Balay else break; 1367acdf5bf4SSatish Balay } 1368acdf5bf4SSatish Balay imark = i; 1369acdf5bf4SSatish Balay } 1370d9d09a02SSatish Balay for (i=0; i<nzA; i++) idx_p[imark+i] = cstart*bs + cworkA[i]; 1371d9d09a02SSatish Balay for (i=imark; i<nzB; i++) idx_p[nzA+i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ; 1372acdf5bf4SSatish Balay } 1373d64ed03dSBarry Smith } else { 1374f4259b30SLisandro Dalcin if (idx) *idx = NULL; 1375f4259b30SLisandro Dalcin if (v) *v = NULL; 1376d212a18eSSatish Balay } 1377acdf5bf4SSatish Balay } 1378acdf5bf4SSatish Balay *nz = nztot; 13799566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->restorerow)(mat->A,lrow,&nzA,pcA,pvA)); 13809566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->restorerow)(mat->B,lrow,&nzB,pcB,pvB)); 13813a40ed3dSBarry Smith PetscFunctionReturn(0); 1382acdf5bf4SSatish Balay } 1383acdf5bf4SSatish Balay 1384b24ad042SBarry Smith PetscErrorCode MatRestoreRow_MPIBAIJ(Mat mat,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 1385acdf5bf4SSatish Balay { 1386acdf5bf4SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 1387d64ed03dSBarry Smith 1388d64ed03dSBarry Smith PetscFunctionBegin; 13895f80ce2aSJacob Faibussowitsch PetscCheck(baij->getrowactive,PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"MatGetRow not called"); 1390acdf5bf4SSatish Balay baij->getrowactive = PETSC_FALSE; 13913a40ed3dSBarry Smith PetscFunctionReturn(0); 1392acdf5bf4SSatish Balay } 1393acdf5bf4SSatish Balay 1394dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_MPIBAIJ(Mat A) 139558667388SSatish Balay { 139658667388SSatish Balay Mat_MPIBAIJ *l = (Mat_MPIBAIJ*)A->data; 1397d64ed03dSBarry Smith 1398d64ed03dSBarry Smith PetscFunctionBegin; 13999566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(l->A)); 14009566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(l->B)); 14013a40ed3dSBarry Smith PetscFunctionReturn(0); 140258667388SSatish Balay } 14030ac07820SSatish Balay 1404dfbe8321SBarry Smith PetscErrorCode MatGetInfo_MPIBAIJ(Mat matin,MatInfoType flag,MatInfo *info) 14050ac07820SSatish Balay { 14064e220ebcSLois Curfman McInnes Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)matin->data; 14074e220ebcSLois Curfman McInnes Mat A = a->A,B = a->B; 14083966268fSBarry Smith PetscLogDouble isend[5],irecv[5]; 14090ac07820SSatish Balay 1410d64ed03dSBarry Smith PetscFunctionBegin; 1411d0f46423SBarry Smith info->block_size = (PetscReal)matin->rmap->bs; 141226fbe8dcSKarl Rupp 14139566063dSJacob Faibussowitsch PetscCall(MatGetInfo(A,MAT_LOCAL,info)); 141426fbe8dcSKarl Rupp 14150e4b21beSBarry Smith isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded; 1416de87f314SBarry Smith isend[3] = info->memory; isend[4] = info->mallocs; 141726fbe8dcSKarl Rupp 14189566063dSJacob Faibussowitsch PetscCall(MatGetInfo(B,MAT_LOCAL,info)); 141926fbe8dcSKarl Rupp 14200e4b21beSBarry Smith isend[0] += info->nz_used; isend[1] += info->nz_allocated; isend[2] += info->nz_unneeded; 1421de87f314SBarry Smith isend[3] += info->memory; isend[4] += info->mallocs; 142226fbe8dcSKarl Rupp 14230ac07820SSatish Balay if (flag == MAT_LOCAL) { 14244e220ebcSLois Curfman McInnes info->nz_used = isend[0]; 14254e220ebcSLois Curfman McInnes info->nz_allocated = isend[1]; 14264e220ebcSLois Curfman McInnes info->nz_unneeded = isend[2]; 14274e220ebcSLois Curfman McInnes info->memory = isend[3]; 14284e220ebcSLois Curfman McInnes info->mallocs = isend[4]; 14290ac07820SSatish Balay } else if (flag == MAT_GLOBAL_MAX) { 14301c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(isend,irecv,5,MPIU_PETSCLOGDOUBLE,MPI_MAX,PetscObjectComm((PetscObject)matin))); 143126fbe8dcSKarl Rupp 14324e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 14334e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 14344e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 14354e220ebcSLois Curfman McInnes info->memory = irecv[3]; 14364e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 14370ac07820SSatish Balay } else if (flag == MAT_GLOBAL_SUM) { 14381c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(isend,irecv,5,MPIU_PETSCLOGDOUBLE,MPI_SUM,PetscObjectComm((PetscObject)matin))); 143926fbe8dcSKarl Rupp 14404e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 14414e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 14424e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 14434e220ebcSLois Curfman McInnes info->memory = irecv[3]; 14444e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 144598921bdaSJacob Faibussowitsch } else SETERRQ(PetscObjectComm((PetscObject)matin),PETSC_ERR_ARG_WRONG,"Unknown MatInfoType argument %d",(int)flag); 14464e220ebcSLois Curfman McInnes info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */ 14474e220ebcSLois Curfman McInnes info->fill_ratio_needed = 0; 14484e220ebcSLois Curfman McInnes info->factor_mallocs = 0; 14493a40ed3dSBarry Smith PetscFunctionReturn(0); 14500ac07820SSatish Balay } 14510ac07820SSatish Balay 1452ace3abfcSBarry Smith PetscErrorCode MatSetOption_MPIBAIJ(Mat A,MatOption op,PetscBool flg) 145358667388SSatish Balay { 145458667388SSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 145558667388SSatish Balay 1456d64ed03dSBarry Smith PetscFunctionBegin; 145712c028f9SKris Buschelman switch (op) { 1458512a5fc5SBarry Smith case MAT_NEW_NONZERO_LOCATIONS: 145912c028f9SKris Buschelman case MAT_NEW_NONZERO_ALLOCATION_ERR: 146028b2fa4aSMatthew Knepley case MAT_UNUSED_NONZERO_LOCATION_ERR: 1461a9817697SBarry Smith case MAT_KEEP_NONZERO_PATTERN: 146212c028f9SKris Buschelman case MAT_NEW_NONZERO_LOCATION_ERR: 146343674050SBarry Smith MatCheckPreallocated(A,1); 14649566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->A,op,flg)); 14659566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->B,op,flg)); 146612c028f9SKris Buschelman break; 146712c028f9SKris Buschelman case MAT_ROW_ORIENTED: 146843674050SBarry Smith MatCheckPreallocated(A,1); 14694e0d8c25SBarry Smith a->roworiented = flg; 147026fbe8dcSKarl Rupp 14719566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->A,op,flg)); 14729566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->B,op,flg)); 147312c028f9SKris Buschelman break; 14748c78258cSHong Zhang case MAT_FORCE_DIAGONAL_ENTRIES: 1475071fcb05SBarry Smith case MAT_SORTED_FULL: 14769566063dSJacob Faibussowitsch PetscCall(PetscInfo(A,"Option %s ignored\n",MatOptions[op])); 147712c028f9SKris Buschelman break; 147812c028f9SKris Buschelman case MAT_IGNORE_OFF_PROC_ENTRIES: 14794e0d8c25SBarry Smith a->donotstash = flg; 148012c028f9SKris Buschelman break; 148112c028f9SKris Buschelman case MAT_USE_HASH_TABLE: 14824e0d8c25SBarry Smith a->ht_flag = flg; 1483abf3b562SBarry Smith a->ht_fact = 1.39; 148412c028f9SKris Buschelman break; 148577e54ba9SKris Buschelman case MAT_SYMMETRIC: 148677e54ba9SKris Buschelman case MAT_STRUCTURALLY_SYMMETRIC: 14872188ac68SBarry Smith case MAT_HERMITIAN: 1488c10200c1SHong Zhang case MAT_SUBMAT_SINGLEIS: 14892188ac68SBarry Smith case MAT_SYMMETRY_ETERNAL: 1490*b94d7dedSBarry Smith case MAT_STRUCTURAL_SYMMETRY_ETERNAL: 1491*b94d7dedSBarry Smith case MAT_SPD_ETERNAL: 1492*b94d7dedSBarry Smith /* if the diagonal matrix is square it inherits some of the properties above */ 149377e54ba9SKris Buschelman break; 149412c028f9SKris Buschelman default: 149598921bdaSJacob Faibussowitsch SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_SUP,"unknown option %d",op); 1496d64ed03dSBarry Smith } 14973a40ed3dSBarry Smith PetscFunctionReturn(0); 149858667388SSatish Balay } 149958667388SSatish Balay 1500fc4dec0aSBarry Smith PetscErrorCode MatTranspose_MPIBAIJ(Mat A,MatReuse reuse,Mat *matout) 15010ac07820SSatish Balay { 15020ac07820SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)A->data; 15030ac07820SSatish Balay Mat_SeqBAIJ *Aloc; 15040ac07820SSatish Balay Mat B; 1505d0f46423SBarry Smith PetscInt M =A->rmap->N,N=A->cmap->N,*ai,*aj,i,*rvals,j,k,col; 1506d0f46423SBarry Smith PetscInt bs=A->rmap->bs,mbs=baij->mbs; 15073eda8832SBarry Smith MatScalar *a; 15080ac07820SSatish Balay 1509d64ed03dSBarry Smith PetscFunctionBegin; 1510cf37664fSBarry Smith if (reuse == MAT_INITIAL_MATRIX || reuse == MAT_INPLACE_MATRIX) { 15119566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)A),&B)); 15129566063dSJacob Faibussowitsch PetscCall(MatSetSizes(B,A->cmap->n,A->rmap->n,N,M)); 15139566063dSJacob Faibussowitsch PetscCall(MatSetType(B,((PetscObject)A)->type_name)); 15142e72b8d9SBarry Smith /* Do not know preallocation information, but must set block size */ 15159566063dSJacob Faibussowitsch PetscCall(MatMPIBAIJSetPreallocation(B,A->rmap->bs,PETSC_DECIDE,NULL,PETSC_DECIDE,NULL)); 1516fc4dec0aSBarry Smith } else { 1517fc4dec0aSBarry Smith B = *matout; 1518fc4dec0aSBarry Smith } 15190ac07820SSatish Balay 15200ac07820SSatish Balay /* copy over the A part */ 15210ac07820SSatish Balay Aloc = (Mat_SeqBAIJ*)baij->A->data; 15220ac07820SSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 15239566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(bs,&rvals)); 15240ac07820SSatish Balay 15250ac07820SSatish Balay for (i=0; i<mbs; i++) { 1526899cda47SBarry Smith rvals[0] = bs*(baij->rstartbs + i); 152726fbe8dcSKarl Rupp for (j=1; j<bs; j++) rvals[j] = rvals[j-1] + 1; 15280ac07820SSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 1529899cda47SBarry Smith col = (baij->cstartbs+aj[j])*bs; 15300ac07820SSatish Balay for (k=0; k<bs; k++) { 15319566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPIBAIJ(B,1,&col,bs,rvals,a,INSERT_VALUES)); 153226fbe8dcSKarl Rupp 15330ac07820SSatish Balay col++; a += bs; 15340ac07820SSatish Balay } 15350ac07820SSatish Balay } 15360ac07820SSatish Balay } 15370ac07820SSatish Balay /* copy over the B part */ 15380ac07820SSatish Balay Aloc = (Mat_SeqBAIJ*)baij->B->data; 15390ac07820SSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 15400ac07820SSatish Balay for (i=0; i<mbs; i++) { 1541899cda47SBarry Smith rvals[0] = bs*(baij->rstartbs + i); 154226fbe8dcSKarl Rupp for (j=1; j<bs; j++) rvals[j] = rvals[j-1] + 1; 15430ac07820SSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 15440ac07820SSatish Balay col = baij->garray[aj[j]]*bs; 15450ac07820SSatish Balay for (k=0; k<bs; k++) { 15469566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPIBAIJ(B,1,&col,bs,rvals,a,INSERT_VALUES)); 154726fbe8dcSKarl Rupp col++; 154826fbe8dcSKarl Rupp a += bs; 15490ac07820SSatish Balay } 15500ac07820SSatish Balay } 15510ac07820SSatish Balay } 15529566063dSJacob Faibussowitsch PetscCall(PetscFree(rvals)); 15539566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY)); 15549566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY)); 15550ac07820SSatish Balay 1556cf37664fSBarry Smith if (reuse == MAT_INITIAL_MATRIX || reuse == MAT_REUSE_MATRIX) *matout = B; 155726fbe8dcSKarl Rupp else { 15589566063dSJacob Faibussowitsch PetscCall(MatHeaderMerge(A,&B)); 15590ac07820SSatish Balay } 15603a40ed3dSBarry Smith PetscFunctionReturn(0); 15610ac07820SSatish Balay } 15620e95ebc0SSatish Balay 1563dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_MPIBAIJ(Mat mat,Vec ll,Vec rr) 15640e95ebc0SSatish Balay { 156536c4a09eSSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 156636c4a09eSSatish Balay Mat a = baij->A,b = baij->B; 1567b24ad042SBarry Smith PetscInt s1,s2,s3; 15680e95ebc0SSatish Balay 1569d64ed03dSBarry Smith PetscFunctionBegin; 15709566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(mat,&s2,&s3)); 157136c4a09eSSatish Balay if (rr) { 15729566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(rr,&s1)); 15735f80ce2aSJacob Faibussowitsch PetscCheck(s1==s3,PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"right vector non-conforming local size"); 157436c4a09eSSatish Balay /* Overlap communication with computation. */ 15759566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD)); 157636c4a09eSSatish Balay } 15770e95ebc0SSatish Balay if (ll) { 15789566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(ll,&s1)); 15795f80ce2aSJacob Faibussowitsch PetscCheck(s1==s2,PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"left vector non-conforming local size"); 15809566063dSJacob Faibussowitsch PetscCall((*b->ops->diagonalscale)(b,ll,NULL)); 15810e95ebc0SSatish Balay } 158236c4a09eSSatish Balay /* scale the diagonal block */ 15839566063dSJacob Faibussowitsch PetscCall((*a->ops->diagonalscale)(a,ll,rr)); 158436c4a09eSSatish Balay 158536c4a09eSSatish Balay if (rr) { 158636c4a09eSSatish Balay /* Do a scatter end and then right scale the off-diagonal block */ 15879566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD)); 15889566063dSJacob Faibussowitsch PetscCall((*b->ops->diagonalscale)(b,NULL,baij->lvec)); 158936c4a09eSSatish Balay } 15903a40ed3dSBarry Smith PetscFunctionReturn(0); 15910e95ebc0SSatish Balay } 15920e95ebc0SSatish Balay 15932b40b63fSBarry Smith PetscErrorCode MatZeroRows_MPIBAIJ(Mat A,PetscInt N,const PetscInt rows[],PetscScalar diag,Vec x,Vec b) 15940ac07820SSatish Balay { 15950ac07820SSatish Balay Mat_MPIBAIJ *l = (Mat_MPIBAIJ *) A->data; 159665a92638SMatthew G. Knepley PetscInt *lrows; 15976e520ac8SStefano Zampini PetscInt r, len; 159894342113SStefano Zampini PetscBool cong; 15990ac07820SSatish Balay 1600d64ed03dSBarry Smith PetscFunctionBegin; 16016e520ac8SStefano Zampini /* get locally owned rows */ 16029566063dSJacob Faibussowitsch PetscCall(MatZeroRowsMapLocal_Private(A,N,rows,&len,&lrows)); 160397b48c8fSBarry Smith /* fix right hand side if needed */ 160497b48c8fSBarry Smith if (x && b) { 160565a92638SMatthew G. Knepley const PetscScalar *xx; 160665a92638SMatthew G. Knepley PetscScalar *bb; 160765a92638SMatthew G. Knepley 16089566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(x,&xx)); 16099566063dSJacob Faibussowitsch PetscCall(VecGetArray(b,&bb)); 161065a92638SMatthew G. Knepley for (r = 0; r < len; ++r) bb[lrows[r]] = diag*xx[lrows[r]]; 16119566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(x,&xx)); 16129566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(b,&bb)); 161397b48c8fSBarry Smith } 161497b48c8fSBarry Smith 16150ac07820SSatish Balay /* actually zap the local rows */ 161672dacd9aSBarry Smith /* 161772dacd9aSBarry Smith Zero the required rows. If the "diagonal block" of the matrix 1618a8c7a070SBarry Smith is square and the user wishes to set the diagonal we use separate 161972dacd9aSBarry Smith code so that MatSetValues() is not called for each diagonal allocating 162072dacd9aSBarry Smith new memory, thus calling lots of mallocs and slowing things down. 162172dacd9aSBarry Smith 162272dacd9aSBarry Smith */ 16239c957beeSSatish Balay /* must zero l->B before l->A because the (diag) case below may put values into l->B*/ 16249566063dSJacob Faibussowitsch PetscCall(MatZeroRows_SeqBAIJ(l->B,len,lrows,0.0,NULL,NULL)); 16259566063dSJacob Faibussowitsch PetscCall(MatHasCongruentLayouts(A,&cong)); 162694342113SStefano Zampini if ((diag != 0.0) && cong) { 16279566063dSJacob Faibussowitsch PetscCall(MatZeroRows_SeqBAIJ(l->A,len,lrows,diag,NULL,NULL)); 1628f4df32b1SMatthew Knepley } else if (diag != 0.0) { 16299566063dSJacob Faibussowitsch PetscCall(MatZeroRows_SeqBAIJ(l->A,len,lrows,0.0,NULL,NULL)); 16305f80ce2aSJacob Faibussowitsch PetscCheck(!((Mat_SeqBAIJ*)l->A->data)->nonew,PETSC_COMM_SELF,PETSC_ERR_SUP,"MatZeroRows() on rectangular matrices cannot be used with the Mat options \n\ 1631512a5fc5SBarry Smith MAT_NEW_NONZERO_LOCATIONS,MAT_NEW_NONZERO_LOCATION_ERR,MAT_NEW_NONZERO_ALLOCATION_ERR"); 163265a92638SMatthew G. Knepley for (r = 0; r < len; ++r) { 163365a92638SMatthew G. Knepley const PetscInt row = lrows[r] + A->rmap->rstart; 16349566063dSJacob Faibussowitsch PetscCall(MatSetValues(A,1,&row,1,&row,&diag,INSERT_VALUES)); 1635a07cd24cSSatish Balay } 16369566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY)); 16379566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY)); 16389c957beeSSatish Balay } else { 16399566063dSJacob Faibussowitsch PetscCall(MatZeroRows_SeqBAIJ(l->A,len,lrows,0.0,NULL,NULL)); 1640a07cd24cSSatish Balay } 16419566063dSJacob Faibussowitsch PetscCall(PetscFree(lrows)); 16424f9cfa9eSBarry Smith 16434f9cfa9eSBarry Smith /* only change matrix nonzero state if pattern was allowed to be changed */ 16444f9cfa9eSBarry Smith if (!((Mat_SeqBAIJ*)(l->A->data))->keepnonzeropattern) { 1645e56f5c9eSBarry Smith PetscObjectState state = l->A->nonzerostate + l->B->nonzerostate; 16461c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&state,&A->nonzerostate,1,MPIU_INT64,MPI_SUM,PetscObjectComm((PetscObject)A))); 1647e56f5c9eSBarry Smith } 16483a40ed3dSBarry Smith PetscFunctionReturn(0); 16490ac07820SSatish Balay } 165072dacd9aSBarry Smith 16516f0a72daSMatthew G. Knepley PetscErrorCode MatZeroRowsColumns_MPIBAIJ(Mat A,PetscInt N,const PetscInt rows[],PetscScalar diag,Vec x,Vec b) 16526f0a72daSMatthew G. Knepley { 16536f0a72daSMatthew G. Knepley Mat_MPIBAIJ *l = (Mat_MPIBAIJ*)A->data; 1654131c27b5Sprj- PetscMPIInt n = A->rmap->n,p = 0; 1655131c27b5Sprj- PetscInt i,j,k,r,len = 0,row,col,count; 16566f0a72daSMatthew G. Knepley PetscInt *lrows,*owners = A->rmap->range; 16576f0a72daSMatthew G. Knepley PetscSFNode *rrows; 16586f0a72daSMatthew G. Knepley PetscSF sf; 16596f0a72daSMatthew G. Knepley const PetscScalar *xx; 16606f0a72daSMatthew G. Knepley PetscScalar *bb,*mask; 16616f0a72daSMatthew G. Knepley Vec xmask,lmask; 16626f0a72daSMatthew G. Knepley Mat_SeqBAIJ *baij = (Mat_SeqBAIJ*)l->B->data; 16636f0a72daSMatthew G. Knepley PetscInt bs = A->rmap->bs, bs2 = baij->bs2; 16646f0a72daSMatthew G. Knepley PetscScalar *aa; 16656f0a72daSMatthew G. Knepley 16666f0a72daSMatthew G. Knepley PetscFunctionBegin; 16676f0a72daSMatthew G. Knepley /* Create SF where leaves are input rows and roots are owned rows */ 16689566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(n, &lrows)); 16696f0a72daSMatthew G. Knepley for (r = 0; r < n; ++r) lrows[r] = -1; 16709566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(N, &rrows)); 16716f0a72daSMatthew G. Knepley for (r = 0; r < N; ++r) { 16726f0a72daSMatthew G. Knepley const PetscInt idx = rows[r]; 16735f80ce2aSJacob Faibussowitsch PetscCheck(idx >= 0 && A->rmap->N > idx,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row %" PetscInt_FMT " out of range [0,%" PetscInt_FMT ")",idx,A->rmap->N); 16745ba17502SJed Brown if (idx < owners[p] || owners[p+1] <= idx) { /* short-circuit the search if the last p owns this row too */ 16759566063dSJacob Faibussowitsch PetscCall(PetscLayoutFindOwner(A->rmap,idx,&p)); 16765ba17502SJed Brown } 16776f0a72daSMatthew G. Knepley rrows[r].rank = p; 16786f0a72daSMatthew G. Knepley rrows[r].index = rows[r] - owners[p]; 16796f0a72daSMatthew G. Knepley } 16809566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(PetscObjectComm((PetscObject) A), &sf)); 16819566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(sf, n, N, NULL, PETSC_OWN_POINTER, rrows, PETSC_OWN_POINTER)); 16826f0a72daSMatthew G. Knepley /* Collect flags for rows to be zeroed */ 16839566063dSJacob Faibussowitsch PetscCall(PetscSFReduceBegin(sf, MPIU_INT, (PetscInt *) rows, lrows, MPI_LOR)); 16849566063dSJacob Faibussowitsch PetscCall(PetscSFReduceEnd(sf, MPIU_INT, (PetscInt *) rows, lrows, MPI_LOR)); 16859566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&sf)); 16866f0a72daSMatthew G. Knepley /* Compress and put in row numbers */ 16876f0a72daSMatthew G. Knepley for (r = 0; r < n; ++r) if (lrows[r] >= 0) lrows[len++] = r; 16886f0a72daSMatthew G. Knepley /* zero diagonal part of matrix */ 16899566063dSJacob Faibussowitsch PetscCall(MatZeroRowsColumns(l->A,len,lrows,diag,x,b)); 16906f0a72daSMatthew G. Knepley /* handle off diagonal part of matrix */ 16919566063dSJacob Faibussowitsch PetscCall(MatCreateVecs(A,&xmask,NULL)); 16929566063dSJacob Faibussowitsch PetscCall(VecDuplicate(l->lvec,&lmask)); 16939566063dSJacob Faibussowitsch PetscCall(VecGetArray(xmask,&bb)); 16946f0a72daSMatthew G. Knepley for (i=0; i<len; i++) bb[lrows[i]] = 1; 16959566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(xmask,&bb)); 16969566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(l->Mvctx,xmask,lmask,ADD_VALUES,SCATTER_FORWARD)); 16979566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(l->Mvctx,xmask,lmask,ADD_VALUES,SCATTER_FORWARD)); 16989566063dSJacob Faibussowitsch PetscCall(VecDestroy(&xmask)); 16996f0a72daSMatthew G. Knepley if (x) { 17009566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(l->Mvctx,x,l->lvec,INSERT_VALUES,SCATTER_FORWARD)); 17019566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(l->Mvctx,x,l->lvec,INSERT_VALUES,SCATTER_FORWARD)); 17029566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(l->lvec,&xx)); 17039566063dSJacob Faibussowitsch PetscCall(VecGetArray(b,&bb)); 17046f0a72daSMatthew G. Knepley } 17059566063dSJacob Faibussowitsch PetscCall(VecGetArray(lmask,&mask)); 17066f0a72daSMatthew G. Knepley /* remove zeroed rows of off diagonal matrix */ 17076f0a72daSMatthew G. Knepley for (i = 0; i < len; ++i) { 17086f0a72daSMatthew G. Knepley row = lrows[i]; 17096f0a72daSMatthew G. Knepley count = (baij->i[row/bs +1] - baij->i[row/bs])*bs; 17106f0a72daSMatthew G. Knepley aa = ((MatScalar*)(baij->a)) + baij->i[row/bs]*bs2 + (row%bs); 17116f0a72daSMatthew G. Knepley for (k = 0; k < count; ++k) { 17126f0a72daSMatthew G. Knepley aa[0] = 0.0; 17136f0a72daSMatthew G. Knepley aa += bs; 17146f0a72daSMatthew G. Knepley } 17156f0a72daSMatthew G. Knepley } 17166f0a72daSMatthew G. Knepley /* loop over all elements of off process part of matrix zeroing removed columns*/ 17176f0a72daSMatthew G. Knepley for (i = 0; i < l->B->rmap->N; ++i) { 17186f0a72daSMatthew G. Knepley row = i/bs; 17196f0a72daSMatthew G. Knepley for (j = baij->i[row]; j < baij->i[row+1]; ++j) { 17206f0a72daSMatthew G. Knepley for (k = 0; k < bs; ++k) { 17216f0a72daSMatthew G. Knepley col = bs*baij->j[j] + k; 17226f0a72daSMatthew G. Knepley if (PetscAbsScalar(mask[col])) { 17236f0a72daSMatthew G. Knepley aa = ((MatScalar*)(baij->a)) + j*bs2 + (i%bs) + bs*k; 172489ae1891SBarry Smith if (x) bb[i] -= aa[0]*xx[col]; 17256f0a72daSMatthew G. Knepley aa[0] = 0.0; 17266f0a72daSMatthew G. Knepley } 17276f0a72daSMatthew G. Knepley } 17286f0a72daSMatthew G. Knepley } 17296f0a72daSMatthew G. Knepley } 17306f0a72daSMatthew G. Knepley if (x) { 17319566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(b,&bb)); 17329566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(l->lvec,&xx)); 17336f0a72daSMatthew G. Knepley } 17349566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(lmask,&mask)); 17359566063dSJacob Faibussowitsch PetscCall(VecDestroy(&lmask)); 17369566063dSJacob Faibussowitsch PetscCall(PetscFree(lrows)); 17374f9cfa9eSBarry Smith 17384f9cfa9eSBarry Smith /* only change matrix nonzero state if pattern was allowed to be changed */ 17394f9cfa9eSBarry Smith if (!((Mat_SeqBAIJ*)(l->A->data))->keepnonzeropattern) { 17404f9cfa9eSBarry Smith PetscObjectState state = l->A->nonzerostate + l->B->nonzerostate; 17411c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&state,&A->nonzerostate,1,MPIU_INT64,MPI_SUM,PetscObjectComm((PetscObject)A))); 17424f9cfa9eSBarry Smith } 17436f0a72daSMatthew G. Knepley PetscFunctionReturn(0); 17446f0a72daSMatthew G. Knepley } 17456f0a72daSMatthew G. Knepley 1746dfbe8321SBarry Smith PetscErrorCode MatSetUnfactored_MPIBAIJ(Mat A) 1747bb5a7306SBarry Smith { 1748bb5a7306SBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1749d64ed03dSBarry Smith 1750d64ed03dSBarry Smith PetscFunctionBegin; 17519566063dSJacob Faibussowitsch PetscCall(MatSetUnfactored(a->A)); 17523a40ed3dSBarry Smith PetscFunctionReturn(0); 1753bb5a7306SBarry Smith } 1754bb5a7306SBarry Smith 17556849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIBAIJ(Mat,MatDuplicateOption,Mat*); 17560ac07820SSatish Balay 1757ace3abfcSBarry Smith PetscErrorCode MatEqual_MPIBAIJ(Mat A,Mat B,PetscBool *flag) 17587fc3c18eSBarry Smith { 17597fc3c18eSBarry Smith Mat_MPIBAIJ *matB = (Mat_MPIBAIJ*)B->data,*matA = (Mat_MPIBAIJ*)A->data; 17607fc3c18eSBarry Smith Mat a,b,c,d; 1761ace3abfcSBarry Smith PetscBool flg; 17627fc3c18eSBarry Smith 17637fc3c18eSBarry Smith PetscFunctionBegin; 17647fc3c18eSBarry Smith a = matA->A; b = matA->B; 17657fc3c18eSBarry Smith c = matB->A; d = matB->B; 17667fc3c18eSBarry Smith 17679566063dSJacob Faibussowitsch PetscCall(MatEqual(a,c,&flg)); 1768abc0a331SBarry Smith if (flg) { 17699566063dSJacob Faibussowitsch PetscCall(MatEqual(b,d,&flg)); 17707fc3c18eSBarry Smith } 17711c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&flg,flag,1,MPIU_BOOL,MPI_LAND,PetscObjectComm((PetscObject)A))); 17727fc3c18eSBarry Smith PetscFunctionReturn(0); 17737fc3c18eSBarry Smith } 17747fc3c18eSBarry Smith 17753c896bc6SHong Zhang PetscErrorCode MatCopy_MPIBAIJ(Mat A,Mat B,MatStructure str) 17763c896bc6SHong Zhang { 17773c896bc6SHong Zhang Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 17783c896bc6SHong Zhang Mat_MPIBAIJ *b = (Mat_MPIBAIJ*)B->data; 17793c896bc6SHong Zhang 17803c896bc6SHong Zhang PetscFunctionBegin; 17813c896bc6SHong Zhang /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */ 17823c896bc6SHong Zhang if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) { 17839566063dSJacob Faibussowitsch PetscCall(MatCopy_Basic(A,B,str)); 17843c896bc6SHong Zhang } else { 17859566063dSJacob Faibussowitsch PetscCall(MatCopy(a->A,b->A,str)); 17869566063dSJacob Faibussowitsch PetscCall(MatCopy(a->B,b->B,str)); 17873c896bc6SHong Zhang } 17889566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)B)); 17893c896bc6SHong Zhang PetscFunctionReturn(0); 17903c896bc6SHong Zhang } 1791273d9f13SBarry Smith 17924994cf47SJed Brown PetscErrorCode MatSetUp_MPIBAIJ(Mat A) 1793273d9f13SBarry Smith { 1794273d9f13SBarry Smith PetscFunctionBegin; 17959566063dSJacob Faibussowitsch PetscCall(MatMPIBAIJSetPreallocation(A,A->rmap->bs,PETSC_DEFAULT,NULL,PETSC_DEFAULT,NULL)); 1796273d9f13SBarry Smith PetscFunctionReturn(0); 1797273d9f13SBarry Smith } 1798273d9f13SBarry Smith 17994de5dceeSHong Zhang PetscErrorCode MatAXPYGetPreallocation_MPIBAIJ(Mat Y,const PetscInt *yltog,Mat X,const PetscInt *xltog,PetscInt *nnz) 18004de5dceeSHong Zhang { 1801001ddc4fSHong Zhang PetscInt bs = Y->rmap->bs,m = Y->rmap->N/bs; 18024de5dceeSHong Zhang Mat_SeqBAIJ *x = (Mat_SeqBAIJ*)X->data; 18034de5dceeSHong Zhang Mat_SeqBAIJ *y = (Mat_SeqBAIJ*)Y->data; 18044de5dceeSHong Zhang 18054de5dceeSHong Zhang PetscFunctionBegin; 18069566063dSJacob Faibussowitsch PetscCall(MatAXPYGetPreallocation_MPIX_private(m,x->i,x->j,xltog,y->i,y->j,yltog,nnz)); 18074de5dceeSHong Zhang PetscFunctionReturn(0); 18084de5dceeSHong Zhang } 18094de5dceeSHong Zhang 18104fe895cdSHong Zhang PetscErrorCode MatAXPY_MPIBAIJ(Mat Y,PetscScalar a,Mat X,MatStructure str) 18114fe895cdSHong Zhang { 18124fe895cdSHong Zhang Mat_MPIBAIJ *xx=(Mat_MPIBAIJ*)X->data,*yy=(Mat_MPIBAIJ*)Y->data; 18134fe895cdSHong Zhang PetscBLASInt bnz,one=1; 18144fe895cdSHong Zhang Mat_SeqBAIJ *x,*y; 1815b31f67cfSBarry Smith PetscInt bs2 = Y->rmap->bs*Y->rmap->bs; 18164fe895cdSHong Zhang 18174fe895cdSHong Zhang PetscFunctionBegin; 18184fe895cdSHong Zhang if (str == SAME_NONZERO_PATTERN) { 18194fe895cdSHong Zhang PetscScalar alpha = a; 18204fe895cdSHong Zhang x = (Mat_SeqBAIJ*)xx->A->data; 18214fe895cdSHong Zhang y = (Mat_SeqBAIJ*)yy->A->data; 18229566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(x->nz*bs2,&bnz)); 18238b83055fSJed Brown PetscStackCallBLAS("BLASaxpy",BLASaxpy_(&bnz,&alpha,x->a,&one,y->a,&one)); 18244fe895cdSHong Zhang x = (Mat_SeqBAIJ*)xx->B->data; 18254fe895cdSHong Zhang y = (Mat_SeqBAIJ*)yy->B->data; 18269566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(x->nz*bs2,&bnz)); 18278b83055fSJed Brown PetscStackCallBLAS("BLASaxpy",BLASaxpy_(&bnz,&alpha,x->a,&one,y->a,&one)); 18289566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)Y)); 1829ab784542SHong Zhang } else if (str == SUBSET_NONZERO_PATTERN) { /* nonzeros of X is a subset of Y's */ 18309566063dSJacob Faibussowitsch PetscCall(MatAXPY_Basic(Y,a,X,str)); 18314fe895cdSHong Zhang } else { 18324de5dceeSHong Zhang Mat B; 18334de5dceeSHong Zhang PetscInt *nnz_d,*nnz_o,bs=Y->rmap->bs; 18349566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(yy->A->rmap->N,&nnz_d)); 18359566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(yy->B->rmap->N,&nnz_o)); 18369566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)Y),&B)); 18379566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)B,((PetscObject)Y)->name)); 18389566063dSJacob Faibussowitsch PetscCall(MatSetSizes(B,Y->rmap->n,Y->cmap->n,Y->rmap->N,Y->cmap->N)); 18399566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizesFromMats(B,Y,Y)); 18409566063dSJacob Faibussowitsch PetscCall(MatSetType(B,MATMPIBAIJ)); 18419566063dSJacob Faibussowitsch PetscCall(MatAXPYGetPreallocation_SeqBAIJ(yy->A,xx->A,nnz_d)); 18429566063dSJacob Faibussowitsch PetscCall(MatAXPYGetPreallocation_MPIBAIJ(yy->B,yy->garray,xx->B,xx->garray,nnz_o)); 18439566063dSJacob Faibussowitsch PetscCall(MatMPIBAIJSetPreallocation(B,bs,0,nnz_d,0,nnz_o)); 18444de5dceeSHong Zhang /* MatAXPY_BasicWithPreallocation() for BAIJ matrix is much slower than AIJ, even for bs=1 ! */ 18459566063dSJacob Faibussowitsch PetscCall(MatAXPY_BasicWithPreallocation(B,Y,a,X,str)); 18469566063dSJacob Faibussowitsch PetscCall(MatHeaderMerge(Y,&B)); 18479566063dSJacob Faibussowitsch PetscCall(PetscFree(nnz_d)); 18489566063dSJacob Faibussowitsch PetscCall(PetscFree(nnz_o)); 18494fe895cdSHong Zhang } 18504fe895cdSHong Zhang PetscFunctionReturn(0); 18514fe895cdSHong Zhang } 18524fe895cdSHong Zhang 18532726fb6dSPierre Jolivet PetscErrorCode MatConjugate_MPIBAIJ(Mat mat) 18542726fb6dSPierre Jolivet { 18555f80ce2aSJacob Faibussowitsch PetscFunctionBegin; 18565f80ce2aSJacob Faibussowitsch if (PetscDefined(USE_COMPLEX)) { 18572726fb6dSPierre Jolivet Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)mat->data; 18582726fb6dSPierre Jolivet 18599566063dSJacob Faibussowitsch PetscCall(MatConjugate_SeqBAIJ(a->A)); 18609566063dSJacob Faibussowitsch PetscCall(MatConjugate_SeqBAIJ(a->B)); 18615f80ce2aSJacob Faibussowitsch } 18622726fb6dSPierre Jolivet PetscFunctionReturn(0); 18632726fb6dSPierre Jolivet } 18642726fb6dSPierre Jolivet 186599cafbc1SBarry Smith PetscErrorCode MatRealPart_MPIBAIJ(Mat A) 186699cafbc1SBarry Smith { 186799cafbc1SBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 186899cafbc1SBarry Smith 186999cafbc1SBarry Smith PetscFunctionBegin; 18709566063dSJacob Faibussowitsch PetscCall(MatRealPart(a->A)); 18719566063dSJacob Faibussowitsch PetscCall(MatRealPart(a->B)); 187299cafbc1SBarry Smith PetscFunctionReturn(0); 187399cafbc1SBarry Smith } 187499cafbc1SBarry Smith 187599cafbc1SBarry Smith PetscErrorCode MatImaginaryPart_MPIBAIJ(Mat A) 187699cafbc1SBarry Smith { 187799cafbc1SBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 187899cafbc1SBarry Smith 187999cafbc1SBarry Smith PetscFunctionBegin; 18809566063dSJacob Faibussowitsch PetscCall(MatImaginaryPart(a->A)); 18819566063dSJacob Faibussowitsch PetscCall(MatImaginaryPart(a->B)); 188299cafbc1SBarry Smith PetscFunctionReturn(0); 188399cafbc1SBarry Smith } 188499cafbc1SBarry Smith 18857dae84e0SHong Zhang PetscErrorCode MatCreateSubMatrix_MPIBAIJ(Mat mat,IS isrow,IS iscol,MatReuse call,Mat *newmat) 18864aa3045dSJed Brown { 18874aa3045dSJed Brown IS iscol_local; 18884aa3045dSJed Brown PetscInt csize; 18894aa3045dSJed Brown 18904aa3045dSJed Brown PetscFunctionBegin; 18919566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol,&csize)); 1892b79d0421SJed Brown if (call == MAT_REUSE_MATRIX) { 18939566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*newmat,"ISAllGather",(PetscObject*)&iscol_local)); 18945f80ce2aSJacob Faibussowitsch PetscCheck(iscol_local,PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Submatrix passed in was not used before, cannot reuse"); 1895b79d0421SJed Brown } else { 18969566063dSJacob Faibussowitsch PetscCall(ISAllGather(iscol,&iscol_local)); 1897b79d0421SJed Brown } 18989566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrix_MPIBAIJ_Private(mat,isrow,iscol_local,csize,call,newmat)); 1899b79d0421SJed Brown if (call == MAT_INITIAL_MATRIX) { 19009566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)*newmat,"ISAllGather",(PetscObject)iscol_local)); 19019566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscol_local)); 1902b79d0421SJed Brown } 19034aa3045dSJed Brown PetscFunctionReturn(0); 19044aa3045dSJed Brown } 190517df9f7cSHong Zhang 190682094794SBarry Smith /* 190782094794SBarry Smith Not great since it makes two copies of the submatrix, first an SeqBAIJ 190882094794SBarry Smith in local and then by concatenating the local matrices the end result. 19097dae84e0SHong Zhang Writing it directly would be much like MatCreateSubMatrices_MPIBAIJ(). 19108f46ffcaSHong Zhang This routine is used for BAIJ and SBAIJ matrices (unfortunate dependency). 191182094794SBarry Smith */ 19127dae84e0SHong Zhang PetscErrorCode MatCreateSubMatrix_MPIBAIJ_Private(Mat mat,IS isrow,IS iscol,PetscInt csize,MatReuse call,Mat *newmat) 191382094794SBarry Smith { 191482094794SBarry Smith PetscMPIInt rank,size; 191582094794SBarry Smith PetscInt i,m,n,rstart,row,rend,nz,*cwork,j,bs; 1916c9ffca76SHong Zhang PetscInt *ii,*jj,nlocal,*dlens,*olens,dlen,olen,jend,mglobal; 191729dcf524SDmitry Karpeev Mat M,Mreuse; 191882094794SBarry Smith MatScalar *vwork,*aa; 1919ce94432eSBarry Smith MPI_Comm comm; 192029dcf524SDmitry Karpeev IS isrow_new, iscol_new; 192182094794SBarry Smith Mat_SeqBAIJ *aij; 192282094794SBarry Smith 192382094794SBarry Smith PetscFunctionBegin; 19249566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)mat,&comm)); 19259566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm,&rank)); 19269566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm,&size)); 192729dcf524SDmitry Karpeev /* The compression and expansion should be avoided. Doesn't point 192829dcf524SDmitry Karpeev out errors, might change the indices, hence buggey */ 19299566063dSJacob Faibussowitsch PetscCall(ISCompressIndicesGeneral(mat->rmap->N,mat->rmap->n,mat->rmap->bs,1,&isrow,&isrow_new)); 19309566063dSJacob Faibussowitsch PetscCall(ISCompressIndicesGeneral(mat->cmap->N,mat->cmap->n,mat->cmap->bs,1,&iscol,&iscol_new)); 193182094794SBarry Smith 193282094794SBarry Smith if (call == MAT_REUSE_MATRIX) { 19339566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*newmat,"SubMatrix",(PetscObject*)&Mreuse)); 19345f80ce2aSJacob Faibussowitsch PetscCheck(Mreuse,PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Submatrix passed in was not used before, cannot reuse"); 19359566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrices_MPIBAIJ_local(mat,1,&isrow_new,&iscol_new,MAT_REUSE_MATRIX,&Mreuse)); 193682094794SBarry Smith } else { 19379566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrices_MPIBAIJ_local(mat,1,&isrow_new,&iscol_new,MAT_INITIAL_MATRIX,&Mreuse)); 193882094794SBarry Smith } 19399566063dSJacob Faibussowitsch PetscCall(ISDestroy(&isrow_new)); 19409566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscol_new)); 194182094794SBarry Smith /* 194282094794SBarry Smith m - number of local rows 194382094794SBarry Smith n - number of columns (same on all processors) 194482094794SBarry Smith rstart - first row in new global matrix generated 194582094794SBarry Smith */ 19469566063dSJacob Faibussowitsch PetscCall(MatGetBlockSize(mat,&bs)); 19479566063dSJacob Faibussowitsch PetscCall(MatGetSize(Mreuse,&m,&n)); 194882094794SBarry Smith m = m/bs; 194982094794SBarry Smith n = n/bs; 195082094794SBarry Smith 195182094794SBarry Smith if (call == MAT_INITIAL_MATRIX) { 195282094794SBarry Smith aij = (Mat_SeqBAIJ*)(Mreuse)->data; 195382094794SBarry Smith ii = aij->i; 195482094794SBarry Smith jj = aij->j; 195582094794SBarry Smith 195682094794SBarry Smith /* 195782094794SBarry Smith Determine the number of non-zeros in the diagonal and off-diagonal 195882094794SBarry Smith portions of the matrix in order to do correct preallocation 195982094794SBarry Smith */ 196082094794SBarry Smith 196182094794SBarry Smith /* first get start and end of "diagonal" columns */ 196282094794SBarry Smith if (csize == PETSC_DECIDE) { 19639566063dSJacob Faibussowitsch PetscCall(ISGetSize(isrow,&mglobal)); 196482094794SBarry Smith if (mglobal == n*bs) { /* square matrix */ 196582094794SBarry Smith nlocal = m; 196682094794SBarry Smith } else { 196782094794SBarry Smith nlocal = n/size + ((n % size) > rank); 196882094794SBarry Smith } 196982094794SBarry Smith } else { 197082094794SBarry Smith nlocal = csize/bs; 197182094794SBarry Smith } 19729566063dSJacob Faibussowitsch PetscCallMPI(MPI_Scan(&nlocal,&rend,1,MPIU_INT,MPI_SUM,comm)); 197382094794SBarry Smith rstart = rend - nlocal; 1974aed4548fSBarry Smith PetscCheck(rank != size - 1 || rend == n,PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Local column sizes %" PetscInt_FMT " do not add up to total number of columns %" PetscInt_FMT,rend,n); 197582094794SBarry Smith 197682094794SBarry Smith /* next, compute all the lengths */ 19779566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(m+1,&dlens,m+1,&olens)); 197882094794SBarry Smith for (i=0; i<m; i++) { 197982094794SBarry Smith jend = ii[i+1] - ii[i]; 198082094794SBarry Smith olen = 0; 198182094794SBarry Smith dlen = 0; 198282094794SBarry Smith for (j=0; j<jend; j++) { 198382094794SBarry Smith if (*jj < rstart || *jj >= rend) olen++; 198482094794SBarry Smith else dlen++; 198582094794SBarry Smith jj++; 198682094794SBarry Smith } 198782094794SBarry Smith olens[i] = olen; 198882094794SBarry Smith dlens[i] = dlen; 198982094794SBarry Smith } 19909566063dSJacob Faibussowitsch PetscCall(MatCreate(comm,&M)); 19919566063dSJacob Faibussowitsch PetscCall(MatSetSizes(M,bs*m,bs*nlocal,PETSC_DECIDE,bs*n)); 19929566063dSJacob Faibussowitsch PetscCall(MatSetType(M,((PetscObject)mat)->type_name)); 19939566063dSJacob Faibussowitsch PetscCall(MatMPIBAIJSetPreallocation(M,bs,0,dlens,0,olens)); 19949566063dSJacob Faibussowitsch PetscCall(MatMPISBAIJSetPreallocation(M,bs,0,dlens,0,olens)); 19959566063dSJacob Faibussowitsch PetscCall(PetscFree2(dlens,olens)); 199682094794SBarry Smith } else { 199782094794SBarry Smith PetscInt ml,nl; 199882094794SBarry Smith 199982094794SBarry Smith M = *newmat; 20009566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(M,&ml,&nl)); 20015f80ce2aSJacob Faibussowitsch PetscCheck(ml == m,PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Previous matrix must be same size/layout as request"); 20029566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(M)); 200382094794SBarry Smith /* 200482094794SBarry Smith The next two lines are needed so we may call MatSetValues_MPIAIJ() below directly, 200582094794SBarry Smith rather than the slower MatSetValues(). 200682094794SBarry Smith */ 200782094794SBarry Smith M->was_assembled = PETSC_TRUE; 200882094794SBarry Smith M->assembled = PETSC_FALSE; 200982094794SBarry Smith } 20109566063dSJacob Faibussowitsch PetscCall(MatSetOption(M,MAT_ROW_ORIENTED,PETSC_FALSE)); 20119566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(M,&rstart,&rend)); 201282094794SBarry Smith aij = (Mat_SeqBAIJ*)(Mreuse)->data; 201382094794SBarry Smith ii = aij->i; 201482094794SBarry Smith jj = aij->j; 201582094794SBarry Smith aa = aij->a; 201682094794SBarry Smith for (i=0; i<m; i++) { 201782094794SBarry Smith row = rstart/bs + i; 201882094794SBarry Smith nz = ii[i+1] - ii[i]; 201982094794SBarry Smith cwork = jj; jj += nz; 202075f6568bSJed Brown vwork = aa; aa += nz*bs*bs; 20219566063dSJacob Faibussowitsch PetscCall(MatSetValuesBlocked_MPIBAIJ(M,1,&row,nz,cwork,vwork,INSERT_VALUES)); 202282094794SBarry Smith } 202382094794SBarry Smith 20249566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(M,MAT_FINAL_ASSEMBLY)); 20259566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(M,MAT_FINAL_ASSEMBLY)); 202682094794SBarry Smith *newmat = M; 202782094794SBarry Smith 202882094794SBarry Smith /* save submatrix used in processor for next request */ 202982094794SBarry Smith if (call == MAT_INITIAL_MATRIX) { 20309566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)M,"SubMatrix",(PetscObject)Mreuse)); 20319566063dSJacob Faibussowitsch PetscCall(PetscObjectDereference((PetscObject)Mreuse)); 203282094794SBarry Smith } 203382094794SBarry Smith PetscFunctionReturn(0); 203482094794SBarry Smith } 203582094794SBarry Smith 203682094794SBarry Smith PetscErrorCode MatPermute_MPIBAIJ(Mat A,IS rowp,IS colp,Mat *B) 203782094794SBarry Smith { 203882094794SBarry Smith MPI_Comm comm,pcomm; 2039a0a83eb5SRémi Lacroix PetscInt clocal_size,nrows; 204082094794SBarry Smith const PetscInt *rows; 2041dbf0e21dSBarry Smith PetscMPIInt size; 2042a0a83eb5SRémi Lacroix IS crowp,lcolp; 204382094794SBarry Smith 204482094794SBarry Smith PetscFunctionBegin; 20459566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)A,&comm)); 204682094794SBarry Smith /* make a collective version of 'rowp' */ 20479566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)rowp,&pcomm)); 204882094794SBarry Smith if (pcomm==comm) { 204982094794SBarry Smith crowp = rowp; 205082094794SBarry Smith } else { 20519566063dSJacob Faibussowitsch PetscCall(ISGetSize(rowp,&nrows)); 20529566063dSJacob Faibussowitsch PetscCall(ISGetIndices(rowp,&rows)); 20539566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(comm,nrows,rows,PETSC_COPY_VALUES,&crowp)); 20549566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(rowp,&rows)); 205582094794SBarry Smith } 20569566063dSJacob Faibussowitsch PetscCall(ISSetPermutation(crowp)); 2057a0a83eb5SRémi Lacroix /* make a local version of 'colp' */ 20589566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)colp,&pcomm)); 20599566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(pcomm,&size)); 2060dbf0e21dSBarry Smith if (size==1) { 206182094794SBarry Smith lcolp = colp; 206282094794SBarry Smith } else { 20639566063dSJacob Faibussowitsch PetscCall(ISAllGather(colp,&lcolp)); 206482094794SBarry Smith } 20659566063dSJacob Faibussowitsch PetscCall(ISSetPermutation(lcolp)); 206675f6568bSJed Brown /* now we just get the submatrix */ 20679566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(A,NULL,&clocal_size)); 20689566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrix_MPIBAIJ_Private(A,crowp,lcolp,clocal_size,MAT_INITIAL_MATRIX,B)); 2069a0a83eb5SRémi Lacroix /* clean up */ 2070a0a83eb5SRémi Lacroix if (pcomm!=comm) { 20719566063dSJacob Faibussowitsch PetscCall(ISDestroy(&crowp)); 2072a0a83eb5SRémi Lacroix } 2073dbf0e21dSBarry Smith if (size>1) { 20749566063dSJacob Faibussowitsch PetscCall(ISDestroy(&lcolp)); 207582094794SBarry Smith } 207682094794SBarry Smith PetscFunctionReturn(0); 207782094794SBarry Smith } 207882094794SBarry Smith 20797087cfbeSBarry Smith PetscErrorCode MatGetGhosts_MPIBAIJ(Mat mat,PetscInt *nghosts,const PetscInt *ghosts[]) 20808c7482ecSBarry Smith { 20818c7482ecSBarry Smith Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*) mat->data; 20828c7482ecSBarry Smith Mat_SeqBAIJ *B = (Mat_SeqBAIJ*)baij->B->data; 20838c7482ecSBarry Smith 20848c7482ecSBarry Smith PetscFunctionBegin; 208526fbe8dcSKarl Rupp if (nghosts) *nghosts = B->nbs; 208626fbe8dcSKarl Rupp if (ghosts) *ghosts = baij->garray; 20878c7482ecSBarry Smith PetscFunctionReturn(0); 20888c7482ecSBarry Smith } 20898c7482ecSBarry Smith 2090d1adec66SJed Brown PetscErrorCode MatGetSeqNonzeroStructure_MPIBAIJ(Mat A,Mat *newmat) 2091f6d58c54SBarry Smith { 2092f6d58c54SBarry Smith Mat B; 2093f6d58c54SBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 2094f6d58c54SBarry Smith Mat_SeqBAIJ *ad = (Mat_SeqBAIJ*)a->A->data,*bd = (Mat_SeqBAIJ*)a->B->data; 2095f6d58c54SBarry Smith Mat_SeqAIJ *b; 2096f4259b30SLisandro Dalcin PetscMPIInt size,rank,*recvcounts = NULL,*displs = NULL; 2097f6d58c54SBarry Smith PetscInt sendcount,i,*rstarts = A->rmap->range,n,cnt,j,bs = A->rmap->bs; 2098f6d58c54SBarry Smith PetscInt m,*garray = a->garray,*lens,*jsendbuf,*a_jsendbuf,*b_jsendbuf; 2099f6d58c54SBarry Smith 2100f6d58c54SBarry Smith PetscFunctionBegin; 21019566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)A),&size)); 21029566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)A),&rank)); 2103f6d58c54SBarry Smith 2104f6d58c54SBarry Smith /* ---------------------------------------------------------------- 2105f6d58c54SBarry Smith Tell every processor the number of nonzeros per row 2106f6d58c54SBarry Smith */ 21079566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(A->rmap->N/bs,&lens)); 2108f6d58c54SBarry Smith for (i=A->rmap->rstart/bs; i<A->rmap->rend/bs; i++) { 2109f6d58c54SBarry Smith lens[i] = ad->i[i-A->rmap->rstart/bs+1] - ad->i[i-A->rmap->rstart/bs] + bd->i[i-A->rmap->rstart/bs+1] - bd->i[i-A->rmap->rstart/bs]; 2110f6d58c54SBarry Smith } 21119566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(2*size,&recvcounts)); 2112f6d58c54SBarry Smith displs = recvcounts + size; 2113f6d58c54SBarry Smith for (i=0; i<size; i++) { 2114f6d58c54SBarry Smith recvcounts[i] = A->rmap->range[i+1]/bs - A->rmap->range[i]/bs; 2115f6d58c54SBarry Smith displs[i] = A->rmap->range[i]/bs; 2116f6d58c54SBarry Smith } 21179566063dSJacob Faibussowitsch PetscCallMPI(MPI_Allgatherv(MPI_IN_PLACE,0,MPI_DATATYPE_NULL,lens,recvcounts,displs,MPIU_INT,PetscObjectComm((PetscObject)A))); 2118f6d58c54SBarry Smith /* --------------------------------------------------------------- 2119f6d58c54SBarry Smith Create the sequential matrix of the same type as the local block diagonal 2120f6d58c54SBarry Smith */ 21219566063dSJacob Faibussowitsch PetscCall(MatCreate(PETSC_COMM_SELF,&B)); 21229566063dSJacob Faibussowitsch PetscCall(MatSetSizes(B,A->rmap->N/bs,A->cmap->N/bs,PETSC_DETERMINE,PETSC_DETERMINE)); 21239566063dSJacob Faibussowitsch PetscCall(MatSetType(B,MATSEQAIJ)); 21249566063dSJacob Faibussowitsch PetscCall(MatSeqAIJSetPreallocation(B,0,lens)); 2125f6d58c54SBarry Smith b = (Mat_SeqAIJ*)B->data; 2126f6d58c54SBarry Smith 2127f6d58c54SBarry Smith /*-------------------------------------------------------------------- 2128f6d58c54SBarry Smith Copy my part of matrix column indices over 2129f6d58c54SBarry Smith */ 2130f6d58c54SBarry Smith sendcount = ad->nz + bd->nz; 2131f6d58c54SBarry Smith jsendbuf = b->j + b->i[rstarts[rank]/bs]; 2132f6d58c54SBarry Smith a_jsendbuf = ad->j; 2133f6d58c54SBarry Smith b_jsendbuf = bd->j; 2134f6d58c54SBarry Smith n = A->rmap->rend/bs - A->rmap->rstart/bs; 2135f6d58c54SBarry Smith cnt = 0; 2136f6d58c54SBarry Smith for (i=0; i<n; i++) { 2137f6d58c54SBarry Smith 2138f6d58c54SBarry Smith /* put in lower diagonal portion */ 2139f6d58c54SBarry Smith m = bd->i[i+1] - bd->i[i]; 2140f6d58c54SBarry Smith while (m > 0) { 2141f6d58c54SBarry Smith /* is it above diagonal (in bd (compressed) numbering) */ 2142f6d58c54SBarry Smith if (garray[*b_jsendbuf] > A->rmap->rstart/bs + i) break; 2143f6d58c54SBarry Smith jsendbuf[cnt++] = garray[*b_jsendbuf++]; 2144f6d58c54SBarry Smith m--; 2145f6d58c54SBarry Smith } 2146f6d58c54SBarry Smith 2147f6d58c54SBarry Smith /* put in diagonal portion */ 2148f6d58c54SBarry Smith for (j=ad->i[i]; j<ad->i[i+1]; j++) { 2149f6d58c54SBarry Smith jsendbuf[cnt++] = A->rmap->rstart/bs + *a_jsendbuf++; 2150f6d58c54SBarry Smith } 2151f6d58c54SBarry Smith 2152f6d58c54SBarry Smith /* put in upper diagonal portion */ 2153f6d58c54SBarry Smith while (m-- > 0) { 2154f6d58c54SBarry Smith jsendbuf[cnt++] = garray[*b_jsendbuf++]; 2155f6d58c54SBarry Smith } 2156f6d58c54SBarry Smith } 21575f80ce2aSJacob Faibussowitsch PetscCheck(cnt == sendcount,PETSC_COMM_SELF,PETSC_ERR_PLIB,"Corrupted PETSc matrix: nz given %" PetscInt_FMT " actual nz %" PetscInt_FMT,sendcount,cnt); 2158f6d58c54SBarry Smith 2159f6d58c54SBarry Smith /*-------------------------------------------------------------------- 2160f6d58c54SBarry Smith Gather all column indices to all processors 2161f6d58c54SBarry Smith */ 2162f6d58c54SBarry Smith for (i=0; i<size; i++) { 2163f6d58c54SBarry Smith recvcounts[i] = 0; 2164f6d58c54SBarry Smith for (j=A->rmap->range[i]/bs; j<A->rmap->range[i+1]/bs; j++) { 2165f6d58c54SBarry Smith recvcounts[i] += lens[j]; 2166f6d58c54SBarry Smith } 2167f6d58c54SBarry Smith } 2168f6d58c54SBarry Smith displs[0] = 0; 2169f6d58c54SBarry Smith for (i=1; i<size; i++) { 2170f6d58c54SBarry Smith displs[i] = displs[i-1] + recvcounts[i-1]; 2171f6d58c54SBarry Smith } 21729566063dSJacob Faibussowitsch PetscCallMPI(MPI_Allgatherv(MPI_IN_PLACE,0,MPI_DATATYPE_NULL,b->j,recvcounts,displs,MPIU_INT,PetscObjectComm((PetscObject)A))); 2173f6d58c54SBarry Smith /*-------------------------------------------------------------------- 2174f6d58c54SBarry Smith Assemble the matrix into useable form (note numerical values not yet set) 2175f6d58c54SBarry Smith */ 2176f6d58c54SBarry Smith /* set the b->ilen (length of each row) values */ 21779566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(b->ilen,lens,A->rmap->N/bs)); 2178f6d58c54SBarry Smith /* set the b->i indices */ 2179f6d58c54SBarry Smith b->i[0] = 0; 2180f6d58c54SBarry Smith for (i=1; i<=A->rmap->N/bs; i++) { 2181f6d58c54SBarry Smith b->i[i] = b->i[i-1] + lens[i-1]; 2182f6d58c54SBarry Smith } 21839566063dSJacob Faibussowitsch PetscCall(PetscFree(lens)); 21849566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY)); 21859566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY)); 21869566063dSJacob Faibussowitsch PetscCall(PetscFree(recvcounts)); 2187f6d58c54SBarry Smith 2188*b94d7dedSBarry Smith PetscCall(MatPropagateSymmetryOptions(A,B)); 2189f6d58c54SBarry Smith *newmat = B; 2190f6d58c54SBarry Smith PetscFunctionReturn(0); 2191f6d58c54SBarry Smith } 2192f6d58c54SBarry Smith 2193b1a666ecSBarry Smith PetscErrorCode MatSOR_MPIBAIJ(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx) 2194b1a666ecSBarry Smith { 2195b1a666ecSBarry Smith Mat_MPIBAIJ *mat = (Mat_MPIBAIJ*)matin->data; 2196f4259b30SLisandro Dalcin Vec bb1 = NULL; 2197b1a666ecSBarry Smith 2198b1a666ecSBarry Smith PetscFunctionBegin; 2199b1a666ecSBarry Smith if (flag == SOR_APPLY_UPPER) { 22009566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx)); 2201b1a666ecSBarry Smith PetscFunctionReturn(0); 2202b1a666ecSBarry Smith } 2203b1a666ecSBarry Smith 22044e980039SJed Brown if (its > 1 || ~flag & SOR_ZERO_INITIAL_GUESS) { 22059566063dSJacob Faibussowitsch PetscCall(VecDuplicate(bb,&bb1)); 22064e980039SJed Brown } 22074e980039SJed Brown 2208b1a666ecSBarry Smith if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP) { 2209b1a666ecSBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 22109566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx)); 2211b1a666ecSBarry Smith its--; 2212b1a666ecSBarry Smith } 2213b1a666ecSBarry Smith 2214b1a666ecSBarry Smith while (its--) { 22159566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD)); 22169566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD)); 2217b1a666ecSBarry Smith 2218b1a666ecSBarry Smith /* update rhs: bb1 = bb - B*x */ 22199566063dSJacob Faibussowitsch PetscCall(VecScale(mat->lvec,-1.0)); 22209566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->multadd)(mat->B,mat->lvec,bb,bb1)); 2221b1a666ecSBarry Smith 2222b1a666ecSBarry Smith /* local sweep */ 22239566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,1,xx)); 2224b1a666ecSBarry Smith } 2225b1a666ecSBarry Smith } else if (flag & SOR_LOCAL_FORWARD_SWEEP) { 2226b1a666ecSBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 22279566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx)); 2228b1a666ecSBarry Smith its--; 2229b1a666ecSBarry Smith } 2230b1a666ecSBarry Smith while (its--) { 22319566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD)); 22329566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD)); 2233b1a666ecSBarry Smith 2234b1a666ecSBarry Smith /* update rhs: bb1 = bb - B*x */ 22359566063dSJacob Faibussowitsch PetscCall(VecScale(mat->lvec,-1.0)); 22369566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->multadd)(mat->B,mat->lvec,bb,bb1)); 2237b1a666ecSBarry Smith 2238b1a666ecSBarry Smith /* local sweep */ 22399566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A,bb1,omega,SOR_FORWARD_SWEEP,fshift,lits,1,xx)); 2240b1a666ecSBarry Smith } 2241b1a666ecSBarry Smith } else if (flag & SOR_LOCAL_BACKWARD_SWEEP) { 2242b1a666ecSBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 22439566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx)); 2244b1a666ecSBarry Smith its--; 2245b1a666ecSBarry Smith } 2246b1a666ecSBarry Smith while (its--) { 22479566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD)); 22489566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD)); 2249b1a666ecSBarry Smith 2250b1a666ecSBarry Smith /* update rhs: bb1 = bb - B*x */ 22519566063dSJacob Faibussowitsch PetscCall(VecScale(mat->lvec,-1.0)); 22529566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->multadd)(mat->B,mat->lvec,bb,bb1)); 2253b1a666ecSBarry Smith 2254b1a666ecSBarry Smith /* local sweep */ 22559566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A,bb1,omega,SOR_BACKWARD_SWEEP,fshift,lits,1,xx)); 2256b1a666ecSBarry Smith } 2257ce94432eSBarry Smith } else SETERRQ(PetscObjectComm((PetscObject)matin),PETSC_ERR_SUP,"Parallel version of SOR requested not supported"); 2258b1a666ecSBarry Smith 22599566063dSJacob Faibussowitsch PetscCall(VecDestroy(&bb1)); 2260b1a666ecSBarry Smith PetscFunctionReturn(0); 2261b1a666ecSBarry Smith } 2262b1a666ecSBarry Smith 2263857cbf51SRichard Tran Mills PetscErrorCode MatGetColumnReductions_MPIBAIJ(Mat A,PetscInt type,PetscReal *reductions) 226447f7623dSRémi Lacroix { 226547f7623dSRémi Lacroix Mat_MPIBAIJ *aij = (Mat_MPIBAIJ*)A->data; 2266a873a8cdSSam Reynolds PetscInt m,N,i,*garray = aij->garray; 226747f7623dSRémi Lacroix PetscInt ib,jb,bs = A->rmap->bs; 226847f7623dSRémi Lacroix Mat_SeqBAIJ *a_aij = (Mat_SeqBAIJ*) aij->A->data; 226947f7623dSRémi Lacroix MatScalar *a_val = a_aij->a; 227047f7623dSRémi Lacroix Mat_SeqBAIJ *b_aij = (Mat_SeqBAIJ*) aij->B->data; 227147f7623dSRémi Lacroix MatScalar *b_val = b_aij->a; 227247f7623dSRémi Lacroix PetscReal *work; 227347f7623dSRémi Lacroix 227447f7623dSRémi Lacroix PetscFunctionBegin; 22759566063dSJacob Faibussowitsch PetscCall(MatGetSize(A,&m,&N)); 22769566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(N,&work)); 2277857cbf51SRichard Tran Mills if (type == NORM_2) { 227847f7623dSRémi Lacroix for (i=a_aij->i[0]; i<a_aij->i[aij->A->rmap->n/bs]; i++) { 227947f7623dSRémi Lacroix for (jb=0; jb<bs; jb++) { 228047f7623dSRémi Lacroix for (ib=0; ib<bs; ib++) { 228147f7623dSRémi Lacroix work[A->cmap->rstart + a_aij->j[i] * bs + jb] += PetscAbsScalar(*a_val * *a_val); 228247f7623dSRémi Lacroix a_val++; 228347f7623dSRémi Lacroix } 228447f7623dSRémi Lacroix } 228547f7623dSRémi Lacroix } 228647f7623dSRémi Lacroix for (i=b_aij->i[0]; i<b_aij->i[aij->B->rmap->n/bs]; i++) { 228747f7623dSRémi Lacroix for (jb=0; jb<bs; jb++) { 228847f7623dSRémi Lacroix for (ib=0; ib<bs; ib++) { 228947f7623dSRémi Lacroix work[garray[b_aij->j[i]] * bs + jb] += PetscAbsScalar(*b_val * *b_val); 229047f7623dSRémi Lacroix b_val++; 229147f7623dSRémi Lacroix } 229247f7623dSRémi Lacroix } 229347f7623dSRémi Lacroix } 2294857cbf51SRichard Tran Mills } else if (type == NORM_1) { 229547f7623dSRémi Lacroix for (i=a_aij->i[0]; i<a_aij->i[aij->A->rmap->n/bs]; i++) { 229647f7623dSRémi Lacroix for (jb=0; jb<bs; jb++) { 229747f7623dSRémi Lacroix for (ib=0; ib<bs; ib++) { 229847f7623dSRémi Lacroix work[A->cmap->rstart + a_aij->j[i] * bs + jb] += PetscAbsScalar(*a_val); 229947f7623dSRémi Lacroix a_val++; 230047f7623dSRémi Lacroix } 230147f7623dSRémi Lacroix } 230247f7623dSRémi Lacroix } 230347f7623dSRémi Lacroix for (i=b_aij->i[0]; i<b_aij->i[aij->B->rmap->n/bs]; i++) { 230447f7623dSRémi Lacroix for (jb=0; jb<bs; jb++) { 230547f7623dSRémi Lacroix for (ib=0; ib<bs; ib++) { 230647f7623dSRémi Lacroix work[garray[b_aij->j[i]] * bs + jb] += PetscAbsScalar(*b_val); 230747f7623dSRémi Lacroix b_val++; 230847f7623dSRémi Lacroix } 230947f7623dSRémi Lacroix } 231047f7623dSRémi Lacroix } 2311857cbf51SRichard Tran Mills } else if (type == NORM_INFINITY) { 231247f7623dSRémi Lacroix for (i=a_aij->i[0]; i<a_aij->i[aij->A->rmap->n/bs]; i++) { 231347f7623dSRémi Lacroix for (jb=0; jb<bs; jb++) { 231447f7623dSRémi Lacroix for (ib=0; ib<bs; ib++) { 231547f7623dSRémi Lacroix int col = A->cmap->rstart + a_aij->j[i] * bs + jb; 231647f7623dSRémi Lacroix work[col] = PetscMax(PetscAbsScalar(*a_val), work[col]); 231747f7623dSRémi Lacroix a_val++; 231847f7623dSRémi Lacroix } 231947f7623dSRémi Lacroix } 232047f7623dSRémi Lacroix } 232147f7623dSRémi Lacroix for (i=b_aij->i[0]; i<b_aij->i[aij->B->rmap->n/bs]; i++) { 232247f7623dSRémi Lacroix for (jb=0; jb<bs; jb++) { 232347f7623dSRémi Lacroix for (ib=0; ib<bs; ib++) { 232447f7623dSRémi Lacroix int col = garray[b_aij->j[i]] * bs + jb; 232547f7623dSRémi Lacroix work[col] = PetscMax(PetscAbsScalar(*b_val), work[col]); 232647f7623dSRémi Lacroix b_val++; 232747f7623dSRémi Lacroix } 232847f7623dSRémi Lacroix } 232947f7623dSRémi Lacroix } 2330857cbf51SRichard Tran Mills } else if (type == REDUCTION_SUM_REALPART || type == REDUCTION_MEAN_REALPART) { 2331a873a8cdSSam Reynolds for (i=a_aij->i[0]; i<a_aij->i[aij->A->rmap->n/bs]; i++) { 2332a873a8cdSSam Reynolds for (jb=0; jb<bs; jb++) { 2333a873a8cdSSam Reynolds for (ib=0; ib<bs; ib++) { 2334857cbf51SRichard Tran Mills work[A->cmap->rstart + a_aij->j[i] * bs + jb] += PetscRealPart(*a_val); 2335a873a8cdSSam Reynolds a_val++; 2336a873a8cdSSam Reynolds } 2337a873a8cdSSam Reynolds } 2338a873a8cdSSam Reynolds } 2339a873a8cdSSam Reynolds for (i=b_aij->i[0]; i<b_aij->i[aij->B->rmap->n/bs]; i++) { 2340a873a8cdSSam Reynolds for (jb=0; jb<bs; jb++) { 2341a873a8cdSSam Reynolds for (ib=0; ib<bs; ib++) { 2342857cbf51SRichard Tran Mills work[garray[b_aij->j[i]] * bs + jb] += PetscRealPart(*b_val); 2343a873a8cdSSam Reynolds b_val++; 2344a873a8cdSSam Reynolds } 2345a873a8cdSSam Reynolds } 2346a873a8cdSSam Reynolds } 2347857cbf51SRichard Tran Mills } else if (type == REDUCTION_SUM_IMAGINARYPART || type == REDUCTION_MEAN_IMAGINARYPART) { 2348857cbf51SRichard Tran Mills for (i=a_aij->i[0]; i<a_aij->i[aij->A->rmap->n/bs]; i++) { 2349857cbf51SRichard Tran Mills for (jb=0; jb<bs; jb++) { 2350857cbf51SRichard Tran Mills for (ib=0; ib<bs; ib++) { 2351857cbf51SRichard Tran Mills work[A->cmap->rstart + a_aij->j[i] * bs + jb] += PetscImaginaryPart(*a_val); 2352857cbf51SRichard Tran Mills a_val++; 2353857cbf51SRichard Tran Mills } 2354857cbf51SRichard Tran Mills } 2355857cbf51SRichard Tran Mills } 2356857cbf51SRichard Tran Mills for (i=b_aij->i[0]; i<b_aij->i[aij->B->rmap->n/bs]; i++) { 2357857cbf51SRichard Tran Mills for (jb=0; jb<bs; jb++) { 2358857cbf51SRichard Tran Mills for (ib=0; ib<bs; ib++) { 2359857cbf51SRichard Tran Mills work[garray[b_aij->j[i]] * bs + jb] += PetscImaginaryPart(*b_val); 2360857cbf51SRichard Tran Mills b_val++; 2361857cbf51SRichard Tran Mills } 2362857cbf51SRichard Tran Mills } 2363857cbf51SRichard Tran Mills } 2364857cbf51SRichard Tran Mills } else SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ARG_WRONG,"Unknown reduction type"); 2365857cbf51SRichard Tran Mills if (type == NORM_INFINITY) { 23661c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(work,reductions,N,MPIU_REAL,MPIU_MAX,PetscObjectComm((PetscObject)A))); 236747f7623dSRémi Lacroix } else { 23681c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(work,reductions,N,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)A))); 236947f7623dSRémi Lacroix } 23709566063dSJacob Faibussowitsch PetscCall(PetscFree(work)); 2371857cbf51SRichard Tran Mills if (type == NORM_2) { 2372a873a8cdSSam Reynolds for (i=0; i<N; i++) reductions[i] = PetscSqrtReal(reductions[i]); 2373857cbf51SRichard Tran Mills } else if (type == REDUCTION_MEAN_REALPART || type == REDUCTION_MEAN_IMAGINARYPART) { 2374a873a8cdSSam Reynolds for (i=0; i<N; i++) reductions[i] /= m; 237547f7623dSRémi Lacroix } 237647f7623dSRémi Lacroix PetscFunctionReturn(0); 237747f7623dSRémi Lacroix } 237847f7623dSRémi Lacroix 2379713ccfa9SJed Brown PetscErrorCode MatInvertBlockDiagonal_MPIBAIJ(Mat A,const PetscScalar **values) 2380bbead8a2SBarry Smith { 2381bbead8a2SBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ*) A->data; 2382bbead8a2SBarry Smith 2383bbead8a2SBarry Smith PetscFunctionBegin; 23849566063dSJacob Faibussowitsch PetscCall(MatInvertBlockDiagonal(a->A,values)); 23857b6c816cSBarry Smith A->factorerrortype = a->A->factorerrortype; 23867b6c816cSBarry Smith A->factorerror_zeropivot_value = a->A->factorerror_zeropivot_value; 23877b6c816cSBarry Smith A->factorerror_zeropivot_row = a->A->factorerror_zeropivot_row; 2388bbead8a2SBarry Smith PetscFunctionReturn(0); 2389bbead8a2SBarry Smith } 2390bbead8a2SBarry Smith 23917d68702bSBarry Smith PetscErrorCode MatShift_MPIBAIJ(Mat Y,PetscScalar a) 23927d68702bSBarry Smith { 23937d68702bSBarry Smith Mat_MPIBAIJ *maij = (Mat_MPIBAIJ*)Y->data; 23946f33a894SBarry Smith Mat_SeqBAIJ *aij = (Mat_SeqBAIJ*)maij->A->data; 23957d68702bSBarry Smith 23967d68702bSBarry Smith PetscFunctionBegin; 23976f33a894SBarry Smith if (!Y->preallocated) { 23989566063dSJacob Faibussowitsch PetscCall(MatMPIBAIJSetPreallocation(Y,Y->rmap->bs,1,NULL,0,NULL)); 23996f33a894SBarry Smith } else if (!aij->nz) { 2400b83222d8SBarry Smith PetscInt nonew = aij->nonew; 24019566063dSJacob Faibussowitsch PetscCall(MatSeqBAIJSetPreallocation(maij->A,Y->rmap->bs,1,NULL)); 2402b83222d8SBarry Smith aij->nonew = nonew; 24037d68702bSBarry Smith } 24049566063dSJacob Faibussowitsch PetscCall(MatShift_Basic(Y,a)); 24057d68702bSBarry Smith PetscFunctionReturn(0); 24067d68702bSBarry Smith } 24078c7482ecSBarry Smith 24083b49f96aSBarry Smith PetscErrorCode MatMissingDiagonal_MPIBAIJ(Mat A,PetscBool *missing,PetscInt *d) 24093b49f96aSBarry Smith { 24103b49f96aSBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 24113b49f96aSBarry Smith 24123b49f96aSBarry Smith PetscFunctionBegin; 24135f80ce2aSJacob Faibussowitsch PetscCheck(A->rmap->n == A->cmap->n,PETSC_COMM_SELF,PETSC_ERR_SUP,"Only works for square matrices"); 24149566063dSJacob Faibussowitsch PetscCall(MatMissingDiagonal(a->A,missing,d)); 24153b49f96aSBarry Smith if (d) { 24163b49f96aSBarry Smith PetscInt rstart; 24179566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(A,&rstart,NULL)); 24183b49f96aSBarry Smith *d += rstart/A->rmap->bs; 24193b49f96aSBarry Smith 24203b49f96aSBarry Smith } 24213b49f96aSBarry Smith PetscFunctionReturn(0); 24223b49f96aSBarry Smith } 24233b49f96aSBarry Smith 2424a5b7ff6bSBarry Smith PetscErrorCode MatGetDiagonalBlock_MPIBAIJ(Mat A,Mat *a) 2425a5b7ff6bSBarry Smith { 2426a5b7ff6bSBarry Smith PetscFunctionBegin; 2427a5b7ff6bSBarry Smith *a = ((Mat_MPIBAIJ*)A->data)->A; 2428a5b7ff6bSBarry Smith PetscFunctionReturn(0); 2429a5b7ff6bSBarry Smith } 2430a5b7ff6bSBarry Smith 243179bdfe76SSatish Balay /* -------------------------------------------------------------------*/ 24323964eb88SJed Brown static struct _MatOps MatOps_Values = {MatSetValues_MPIBAIJ, 2433cc2dc46cSBarry Smith MatGetRow_MPIBAIJ, 2434cc2dc46cSBarry Smith MatRestoreRow_MPIBAIJ, 2435cc2dc46cSBarry Smith MatMult_MPIBAIJ, 243697304618SKris Buschelman /* 4*/ MatMultAdd_MPIBAIJ, 24377c922b88SBarry Smith MatMultTranspose_MPIBAIJ, 24387c922b88SBarry Smith MatMultTransposeAdd_MPIBAIJ, 2439f4259b30SLisandro Dalcin NULL, 2440f4259b30SLisandro Dalcin NULL, 2441f4259b30SLisandro Dalcin NULL, 2442f4259b30SLisandro Dalcin /*10*/ NULL, 2443f4259b30SLisandro Dalcin NULL, 2444f4259b30SLisandro Dalcin NULL, 2445b1a666ecSBarry Smith MatSOR_MPIBAIJ, 2446cc2dc46cSBarry Smith MatTranspose_MPIBAIJ, 244797304618SKris Buschelman /*15*/ MatGetInfo_MPIBAIJ, 24487fc3c18eSBarry Smith MatEqual_MPIBAIJ, 2449cc2dc46cSBarry Smith MatGetDiagonal_MPIBAIJ, 2450cc2dc46cSBarry Smith MatDiagonalScale_MPIBAIJ, 2451cc2dc46cSBarry Smith MatNorm_MPIBAIJ, 245297304618SKris Buschelman /*20*/ MatAssemblyBegin_MPIBAIJ, 2453cc2dc46cSBarry Smith MatAssemblyEnd_MPIBAIJ, 2454cc2dc46cSBarry Smith MatSetOption_MPIBAIJ, 2455cc2dc46cSBarry Smith MatZeroEntries_MPIBAIJ, 2456d519adbfSMatthew Knepley /*24*/ MatZeroRows_MPIBAIJ, 2457f4259b30SLisandro Dalcin NULL, 2458f4259b30SLisandro Dalcin NULL, 2459f4259b30SLisandro Dalcin NULL, 2460f4259b30SLisandro Dalcin NULL, 24614994cf47SJed Brown /*29*/ MatSetUp_MPIBAIJ, 2462f4259b30SLisandro Dalcin NULL, 2463f4259b30SLisandro Dalcin NULL, 2464a5b7ff6bSBarry Smith MatGetDiagonalBlock_MPIBAIJ, 2465f4259b30SLisandro Dalcin NULL, 2466d519adbfSMatthew Knepley /*34*/ MatDuplicate_MPIBAIJ, 2467f4259b30SLisandro Dalcin NULL, 2468f4259b30SLisandro Dalcin NULL, 2469f4259b30SLisandro Dalcin NULL, 2470f4259b30SLisandro Dalcin NULL, 2471d519adbfSMatthew Knepley /*39*/ MatAXPY_MPIBAIJ, 24727dae84e0SHong Zhang MatCreateSubMatrices_MPIBAIJ, 2473cc2dc46cSBarry Smith MatIncreaseOverlap_MPIBAIJ, 2474cc2dc46cSBarry Smith MatGetValues_MPIBAIJ, 24753c896bc6SHong Zhang MatCopy_MPIBAIJ, 2476f4259b30SLisandro Dalcin /*44*/ NULL, 2477cc2dc46cSBarry Smith MatScale_MPIBAIJ, 24787d68702bSBarry Smith MatShift_MPIBAIJ, 2479f4259b30SLisandro Dalcin NULL, 24806f0a72daSMatthew G. Knepley MatZeroRowsColumns_MPIBAIJ, 2481f4259b30SLisandro Dalcin /*49*/ NULL, 2482f4259b30SLisandro Dalcin NULL, 2483f4259b30SLisandro Dalcin NULL, 2484f4259b30SLisandro Dalcin NULL, 2485f4259b30SLisandro Dalcin NULL, 248693dfae19SHong Zhang /*54*/ MatFDColoringCreate_MPIXAIJ, 2487f4259b30SLisandro Dalcin NULL, 2488cc2dc46cSBarry Smith MatSetUnfactored_MPIBAIJ, 248982094794SBarry Smith MatPermute_MPIBAIJ, 2490cc2dc46cSBarry Smith MatSetValuesBlocked_MPIBAIJ, 24917dae84e0SHong Zhang /*59*/ MatCreateSubMatrix_MPIBAIJ, 2492f14a1c24SBarry Smith MatDestroy_MPIBAIJ, 2493f14a1c24SBarry Smith MatView_MPIBAIJ, 2494f4259b30SLisandro Dalcin NULL, 2495f4259b30SLisandro Dalcin NULL, 2496f4259b30SLisandro Dalcin /*64*/ NULL, 2497f4259b30SLisandro Dalcin NULL, 2498f4259b30SLisandro Dalcin NULL, 2499f4259b30SLisandro Dalcin NULL, 2500f4259b30SLisandro Dalcin NULL, 2501d519adbfSMatthew Knepley /*69*/ MatGetRowMaxAbs_MPIBAIJ, 2502f4259b30SLisandro Dalcin NULL, 2503f4259b30SLisandro Dalcin NULL, 2504f4259b30SLisandro Dalcin NULL, 2505f4259b30SLisandro Dalcin NULL, 2506f4259b30SLisandro Dalcin /*74*/ NULL, 2507f6d58c54SBarry Smith MatFDColoringApply_BAIJ, 2508f4259b30SLisandro Dalcin NULL, 2509f4259b30SLisandro Dalcin NULL, 2510f4259b30SLisandro Dalcin NULL, 2511f4259b30SLisandro Dalcin /*79*/ NULL, 2512f4259b30SLisandro Dalcin NULL, 2513f4259b30SLisandro Dalcin NULL, 2514f4259b30SLisandro Dalcin NULL, 25155bba2384SShri Abhyankar MatLoad_MPIBAIJ, 2516f4259b30SLisandro Dalcin /*84*/ NULL, 2517f4259b30SLisandro Dalcin NULL, 2518f4259b30SLisandro Dalcin NULL, 2519f4259b30SLisandro Dalcin NULL, 2520f4259b30SLisandro Dalcin NULL, 2521f4259b30SLisandro Dalcin /*89*/ NULL, 2522f4259b30SLisandro Dalcin NULL, 2523f4259b30SLisandro Dalcin NULL, 2524f4259b30SLisandro Dalcin NULL, 2525f4259b30SLisandro Dalcin NULL, 2526f4259b30SLisandro Dalcin /*94*/ NULL, 2527f4259b30SLisandro Dalcin NULL, 2528f4259b30SLisandro Dalcin NULL, 2529f4259b30SLisandro Dalcin NULL, 2530f4259b30SLisandro Dalcin NULL, 2531f4259b30SLisandro Dalcin /*99*/ NULL, 2532f4259b30SLisandro Dalcin NULL, 2533f4259b30SLisandro Dalcin NULL, 25342726fb6dSPierre Jolivet MatConjugate_MPIBAIJ, 2535f4259b30SLisandro Dalcin NULL, 2536f4259b30SLisandro Dalcin /*104*/NULL, 253799cafbc1SBarry Smith MatRealPart_MPIBAIJ, 25388c7482ecSBarry Smith MatImaginaryPart_MPIBAIJ, 2539f4259b30SLisandro Dalcin NULL, 2540f4259b30SLisandro Dalcin NULL, 2541f4259b30SLisandro Dalcin /*109*/NULL, 2542f4259b30SLisandro Dalcin NULL, 2543f4259b30SLisandro Dalcin NULL, 2544f4259b30SLisandro Dalcin NULL, 25453b49f96aSBarry Smith MatMissingDiagonal_MPIBAIJ, 2546d1adec66SJed Brown /*114*/MatGetSeqNonzeroStructure_MPIBAIJ, 2547f4259b30SLisandro Dalcin NULL, 25484683f7a4SShri Abhyankar MatGetGhosts_MPIBAIJ, 2549f4259b30SLisandro Dalcin NULL, 2550f4259b30SLisandro Dalcin NULL, 2551f4259b30SLisandro Dalcin /*119*/NULL, 2552f4259b30SLisandro Dalcin NULL, 2553f4259b30SLisandro Dalcin NULL, 2554f4259b30SLisandro Dalcin NULL, 2555e8271787SHong Zhang MatGetMultiProcBlock_MPIBAIJ, 2556f4259b30SLisandro Dalcin /*124*/NULL, 2557a873a8cdSSam Reynolds MatGetColumnReductions_MPIBAIJ, 25583964eb88SJed Brown MatInvertBlockDiagonal_MPIBAIJ, 2559f4259b30SLisandro Dalcin NULL, 2560f4259b30SLisandro Dalcin NULL, 2561f4259b30SLisandro Dalcin /*129*/ NULL, 2562f4259b30SLisandro Dalcin NULL, 2563f4259b30SLisandro Dalcin NULL, 2564f4259b30SLisandro Dalcin NULL, 2565f4259b30SLisandro Dalcin NULL, 2566f4259b30SLisandro Dalcin /*134*/ NULL, 2567f4259b30SLisandro Dalcin NULL, 2568f4259b30SLisandro Dalcin NULL, 2569f4259b30SLisandro Dalcin NULL, 2570f4259b30SLisandro Dalcin NULL, 257146533700Sstefano_zampini /*139*/ MatSetBlockSizes_Default, 2572f4259b30SLisandro Dalcin NULL, 2573f4259b30SLisandro Dalcin NULL, 2574bdf6f3fcSHong Zhang MatFDColoringSetUp_MPIXAIJ, 2575f4259b30SLisandro Dalcin NULL, 2576d70f29a3SPierre Jolivet /*144*/MatCreateMPIMatConcatenateSeqMat_MPIBAIJ, 2577d70f29a3SPierre Jolivet NULL, 2578d70f29a3SPierre Jolivet NULL, 257999a7f59eSMark Adams NULL, 258099a7f59eSMark Adams NULL, 2581d70f29a3SPierre Jolivet NULL 25828c7482ecSBarry Smith }; 258379bdfe76SSatish Balay 2584cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIBAIJ_MPISBAIJ(Mat,MatType,MatReuse,Mat*); 2585c9225affSStefano Zampini PETSC_INTERN PetscErrorCode MatConvert_XAIJ_IS(Mat,MatType,MatReuse,Mat*); 2586d94109b8SHong Zhang 2587cf12db73SBarry Smith PetscErrorCode MatMPIBAIJSetPreallocationCSR_MPIBAIJ(Mat B,PetscInt bs,const PetscInt ii[],const PetscInt jj[],const PetscScalar V[]) 2588aac34f13SBarry Smith { 2589b8d659d7SLisandro Dalcin PetscInt m,rstart,cstart,cend; 2590f4259b30SLisandro Dalcin PetscInt i,j,dlen,olen,nz,nz_max=0,*d_nnz=NULL,*o_nnz=NULL; 2591f4259b30SLisandro Dalcin const PetscInt *JJ =NULL; 2592f4259b30SLisandro Dalcin PetscScalar *values=NULL; 2593d47bf9aaSJed Brown PetscBool roworiented = ((Mat_MPIBAIJ*)B->data)->roworiented; 25943bd0feecSPierre Jolivet PetscBool nooffprocentries; 2595aac34f13SBarry Smith 2596aac34f13SBarry Smith PetscFunctionBegin; 25979566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetBlockSize(B->rmap,bs)); 25989566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetBlockSize(B->cmap,bs)); 25999566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->rmap)); 26009566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->cmap)); 26019566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetBlockSize(B->rmap,&bs)); 2602d0f46423SBarry Smith m = B->rmap->n/bs; 2603d0f46423SBarry Smith rstart = B->rmap->rstart/bs; 2604d0f46423SBarry Smith cstart = B->cmap->rstart/bs; 2605d0f46423SBarry Smith cend = B->cmap->rend/bs; 2606b8d659d7SLisandro Dalcin 26075f80ce2aSJacob Faibussowitsch PetscCheck(!ii[0],PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"ii[0] must be 0 but it is %" PetscInt_FMT,ii[0]); 26089566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(m,&d_nnz,m,&o_nnz)); 2609aac34f13SBarry Smith for (i=0; i<m; i++) { 2610cf12db73SBarry Smith nz = ii[i+1] - ii[i]; 26115f80ce2aSJacob Faibussowitsch PetscCheck(nz >= 0,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Local row %" PetscInt_FMT " has a negative number of columns %" PetscInt_FMT,i,nz); 2612b8d659d7SLisandro Dalcin nz_max = PetscMax(nz_max,nz); 261337cd3c0dSBarry Smith dlen = 0; 261437cd3c0dSBarry Smith olen = 0; 2615cf12db73SBarry Smith JJ = jj + ii[i]; 2616b8d659d7SLisandro Dalcin for (j=0; j<nz; j++) { 261737cd3c0dSBarry Smith if (*JJ < cstart || *JJ >= cend) olen++; 261837cd3c0dSBarry Smith else dlen++; 2619aac34f13SBarry Smith JJ++; 2620aac34f13SBarry Smith } 262137cd3c0dSBarry Smith d_nnz[i] = dlen; 262237cd3c0dSBarry Smith o_nnz[i] = olen; 2623aac34f13SBarry Smith } 26249566063dSJacob Faibussowitsch PetscCall(MatMPIBAIJSetPreallocation(B,bs,0,d_nnz,0,o_nnz)); 26259566063dSJacob Faibussowitsch PetscCall(PetscFree2(d_nnz,o_nnz)); 2626aac34f13SBarry Smith 2627b8d659d7SLisandro Dalcin values = (PetscScalar*)V; 2628b8d659d7SLisandro Dalcin if (!values) { 26299566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(bs*bs*nz_max,&values)); 2630b8d659d7SLisandro Dalcin } 2631b8d659d7SLisandro Dalcin for (i=0; i<m; i++) { 2632b8d659d7SLisandro Dalcin PetscInt row = i + rstart; 2633cf12db73SBarry Smith PetscInt ncols = ii[i+1] - ii[i]; 2634cf12db73SBarry Smith const PetscInt *icols = jj + ii[i]; 2635bb80cfbbSStefano Zampini if (bs == 1 || !roworiented) { /* block ordering matches the non-nested layout of MatSetValues so we can insert entire rows */ 2636cf12db73SBarry Smith const PetscScalar *svals = values + (V ? (bs*bs*ii[i]) : 0); 26379566063dSJacob Faibussowitsch PetscCall(MatSetValuesBlocked_MPIBAIJ(B,1,&row,ncols,icols,svals,INSERT_VALUES)); 26383adadaf3SJed Brown } else { /* block ordering does not match so we can only insert one block at a time. */ 26393adadaf3SJed Brown PetscInt j; 26403adadaf3SJed Brown for (j=0; j<ncols; j++) { 26413adadaf3SJed Brown const PetscScalar *svals = values + (V ? (bs*bs*(ii[i]+j)) : 0); 26429566063dSJacob Faibussowitsch PetscCall(MatSetValuesBlocked_MPIBAIJ(B,1,&row,1,&icols[j],svals,INSERT_VALUES)); 26433adadaf3SJed Brown } 26443adadaf3SJed Brown } 2645aac34f13SBarry Smith } 2646aac34f13SBarry Smith 26479566063dSJacob Faibussowitsch if (!V) PetscCall(PetscFree(values)); 26483bd0feecSPierre Jolivet nooffprocentries = B->nooffprocentries; 26493bd0feecSPierre Jolivet B->nooffprocentries = PETSC_TRUE; 26509566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY)); 26519566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY)); 26523bd0feecSPierre Jolivet B->nooffprocentries = nooffprocentries; 26533bd0feecSPierre Jolivet 26549566063dSJacob Faibussowitsch PetscCall(MatSetOption(B,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_TRUE)); 2655aac34f13SBarry Smith PetscFunctionReturn(0); 2656aac34f13SBarry Smith } 2657aac34f13SBarry Smith 2658aac34f13SBarry Smith /*@C 2659664954b6SBarry Smith MatMPIBAIJSetPreallocationCSR - Creates a sparse parallel matrix in BAIJ format using the given nonzero structure and (optional) numerical values 2660aac34f13SBarry Smith 2661d083f849SBarry Smith Collective 2662aac34f13SBarry Smith 2663aac34f13SBarry Smith Input Parameters: 26641c4f3114SJed Brown + B - the matrix 2665dfb205c3SBarry Smith . bs - the block size 2666aac34f13SBarry Smith . i - the indices into j for the start of each local row (starts with zero) 2667aac34f13SBarry Smith . j - the column indices for each local row (starts with zero) these must be sorted for each row 2668aac34f13SBarry Smith - v - optional values in the matrix 2669aac34f13SBarry Smith 2670664954b6SBarry Smith Level: advanced 2671aac34f13SBarry Smith 267295452b02SPatrick Sanan Notes: 267395452b02SPatrick Sanan The order of the entries in values is specified by the MatOption MAT_ROW_ORIENTED. For example, C programs 26743adadaf3SJed Brown may want to use the default MAT_ROW_ORIENTED=PETSC_TRUE and use an array v[nnz][bs][bs] where the second index is 26753adadaf3SJed Brown over rows within a block and the last index is over columns within a block row. Fortran programs will likely set 26763adadaf3SJed Brown MAT_ROW_ORIENTED=PETSC_FALSE and use a Fortran array v(bs,bs,nnz) in which the first index is over rows within a 26773adadaf3SJed Brown block column and the second index is over columns within a block. 26783adadaf3SJed Brown 2679664954b6SBarry Smith Though this routine has Preallocation() in the name it also sets the exact nonzero locations of the matrix entries and usually the numerical values as well 2680664954b6SBarry Smith 2681db781477SPatrick Sanan .seealso: `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIBAIJSetPreallocation()`, `MatCreateAIJ()`, `MPIAIJ`, `MatCreateMPIBAIJWithArrays()`, `MPIBAIJ` 2682aac34f13SBarry Smith @*/ 26837087cfbeSBarry Smith PetscErrorCode MatMPIBAIJSetPreallocationCSR(Mat B,PetscInt bs,const PetscInt i[],const PetscInt j[], const PetscScalar v[]) 2684aac34f13SBarry Smith { 2685aac34f13SBarry Smith PetscFunctionBegin; 26866ba663aaSJed Brown PetscValidHeaderSpecific(B,MAT_CLASSID,1); 26876ba663aaSJed Brown PetscValidType(B,1); 26886ba663aaSJed Brown PetscValidLogicalCollectiveInt(B,bs,2); 2689cac4c232SBarry Smith PetscTryMethod(B,"MatMPIBAIJSetPreallocationCSR_C",(Mat,PetscInt,const PetscInt[],const PetscInt[],const PetscScalar[]),(B,bs,i,j,v)); 2690aac34f13SBarry Smith PetscFunctionReturn(0); 2691aac34f13SBarry Smith } 2692aac34f13SBarry Smith 2693b2573a8aSBarry Smith PetscErrorCode MatMPIBAIJSetPreallocation_MPIBAIJ(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt *d_nnz,PetscInt o_nz,const PetscInt *o_nnz) 2694a23d5eceSKris Buschelman { 2695a23d5eceSKris Buschelman Mat_MPIBAIJ *b; 2696535b19f3SBarry Smith PetscInt i; 26975d2a9ed1SStefano Zampini PetscMPIInt size; 2698a23d5eceSKris Buschelman 2699a23d5eceSKris Buschelman PetscFunctionBegin; 27009566063dSJacob Faibussowitsch PetscCall(MatSetBlockSize(B,PetscAbs(bs))); 27019566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->rmap)); 27029566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->cmap)); 27039566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetBlockSize(B->rmap,&bs)); 2704899cda47SBarry Smith 2705a23d5eceSKris Buschelman if (d_nnz) { 2706d0f46423SBarry Smith for (i=0; i<B->rmap->n/bs; i++) { 27075f80ce2aSJacob Faibussowitsch PetscCheck(d_nnz[i] >= 0,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"d_nnz cannot be less than -1: local row %" PetscInt_FMT " value %" PetscInt_FMT,i,d_nnz[i]); 2708a23d5eceSKris Buschelman } 2709a23d5eceSKris Buschelman } 2710a23d5eceSKris Buschelman if (o_nnz) { 2711d0f46423SBarry Smith for (i=0; i<B->rmap->n/bs; i++) { 27125f80ce2aSJacob Faibussowitsch PetscCheck(o_nnz[i] >= 0,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"o_nnz cannot be less than -1: local row %" PetscInt_FMT " value %" PetscInt_FMT,i,o_nnz[i]); 2713a23d5eceSKris Buschelman } 2714a23d5eceSKris Buschelman } 2715a23d5eceSKris Buschelman 2716a23d5eceSKris Buschelman b = (Mat_MPIBAIJ*)B->data; 2717a23d5eceSKris Buschelman b->bs2 = bs*bs; 2718d0f46423SBarry Smith b->mbs = B->rmap->n/bs; 2719d0f46423SBarry Smith b->nbs = B->cmap->n/bs; 2720d0f46423SBarry Smith b->Mbs = B->rmap->N/bs; 2721d0f46423SBarry Smith b->Nbs = B->cmap->N/bs; 2722a23d5eceSKris Buschelman 2723a23d5eceSKris Buschelman for (i=0; i<=b->size; i++) { 2724d0f46423SBarry Smith b->rangebs[i] = B->rmap->range[i]/bs; 2725a23d5eceSKris Buschelman } 2726d0f46423SBarry Smith b->rstartbs = B->rmap->rstart/bs; 2727d0f46423SBarry Smith b->rendbs = B->rmap->rend/bs; 2728d0f46423SBarry Smith b->cstartbs = B->cmap->rstart/bs; 2729d0f46423SBarry Smith b->cendbs = B->cmap->rend/bs; 2730a23d5eceSKris Buschelman 2731cb7b82ddSBarry Smith #if defined(PETSC_USE_CTABLE) 27329566063dSJacob Faibussowitsch PetscCall(PetscTableDestroy(&b->colmap)); 2733cb7b82ddSBarry Smith #else 27349566063dSJacob Faibussowitsch PetscCall(PetscFree(b->colmap)); 2735cb7b82ddSBarry Smith #endif 27369566063dSJacob Faibussowitsch PetscCall(PetscFree(b->garray)); 27379566063dSJacob Faibussowitsch PetscCall(VecDestroy(&b->lvec)); 27389566063dSJacob Faibussowitsch PetscCall(VecScatterDestroy(&b->Mvctx)); 2739cb7b82ddSBarry Smith 2740cb7b82ddSBarry Smith /* Because the B will have been resized we simply destroy it and create a new one each time */ 27419566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)B),&size)); 27429566063dSJacob Faibussowitsch PetscCall(MatDestroy(&b->B)); 27439566063dSJacob Faibussowitsch PetscCall(MatCreate(PETSC_COMM_SELF,&b->B)); 27449566063dSJacob Faibussowitsch PetscCall(MatSetSizes(b->B,B->rmap->n,size > 1 ? B->cmap->N : 0,B->rmap->n,size > 1 ? B->cmap->N : 0)); 27459566063dSJacob Faibussowitsch PetscCall(MatSetType(b->B,MATSEQBAIJ)); 27469566063dSJacob Faibussowitsch PetscCall(PetscLogObjectParent((PetscObject)B,(PetscObject)b->B)); 2747cb7b82ddSBarry Smith 2748526dfc15SBarry Smith if (!B->preallocated) { 27499566063dSJacob Faibussowitsch PetscCall(MatCreate(PETSC_COMM_SELF,&b->A)); 27509566063dSJacob Faibussowitsch PetscCall(MatSetSizes(b->A,B->rmap->n,B->cmap->n,B->rmap->n,B->cmap->n)); 27519566063dSJacob Faibussowitsch PetscCall(MatSetType(b->A,MATSEQBAIJ)); 27529566063dSJacob Faibussowitsch PetscCall(PetscLogObjectParent((PetscObject)B,(PetscObject)b->A)); 27539566063dSJacob Faibussowitsch PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)B),bs,&B->bstash)); 2754526dfc15SBarry Smith } 2755a23d5eceSKris Buschelman 27569566063dSJacob Faibussowitsch PetscCall(MatSeqBAIJSetPreallocation(b->A,bs,d_nz,d_nnz)); 27579566063dSJacob Faibussowitsch PetscCall(MatSeqBAIJSetPreallocation(b->B,bs,o_nz,o_nnz)); 2758526dfc15SBarry Smith B->preallocated = PETSC_TRUE; 2759cb7b82ddSBarry Smith B->was_assembled = PETSC_FALSE; 2760cb7b82ddSBarry Smith B->assembled = PETSC_FALSE; 2761a23d5eceSKris Buschelman PetscFunctionReturn(0); 2762a23d5eceSKris Buschelman } 2763a23d5eceSKris Buschelman 27647087cfbeSBarry Smith extern PetscErrorCode MatDiagonalScaleLocal_MPIBAIJ(Mat,Vec); 27657087cfbeSBarry Smith extern PetscErrorCode MatSetHashTableFactor_MPIBAIJ(Mat,PetscReal); 27665bf65638SKris Buschelman 2767cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIBAIJ_MPIAdj(Mat B, MatType newtype,MatReuse reuse,Mat *adj) 276882094794SBarry Smith { 276982094794SBarry Smith Mat_MPIBAIJ *b = (Mat_MPIBAIJ*)B->data; 277082094794SBarry Smith Mat_SeqBAIJ *d = (Mat_SeqBAIJ*) b->A->data,*o = (Mat_SeqBAIJ*) b->B->data; 277182094794SBarry Smith PetscInt M = B->rmap->n/B->rmap->bs,i,*ii,*jj,cnt,j,k,rstart = B->rmap->rstart/B->rmap->bs; 277282094794SBarry Smith const PetscInt *id = d->i, *jd = d->j, *io = o->i, *jo = o->j, *garray = b->garray; 277382094794SBarry Smith 277482094794SBarry Smith PetscFunctionBegin; 27759566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(M+1,&ii)); 277682094794SBarry Smith ii[0] = 0; 277782094794SBarry Smith for (i=0; i<M; i++) { 277808401ef6SPierre Jolivet PetscCheck((id[i+1] - id[i]) >= 0,PETSC_COMM_SELF,PETSC_ERR_PLIB,"Indices wrong %" PetscInt_FMT " %" PetscInt_FMT " %" PetscInt_FMT,i,id[i],id[i+1]); 277908401ef6SPierre Jolivet PetscCheck((io[i+1] - io[i]) >= 0,PETSC_COMM_SELF,PETSC_ERR_PLIB,"Indices wrong %" PetscInt_FMT " %" PetscInt_FMT " %" PetscInt_FMT,i,io[i],io[i+1]); 278082094794SBarry Smith ii[i+1] = ii[i] + id[i+1] - id[i] + io[i+1] - io[i]; 27815ee9ba1cSJed Brown /* remove one from count of matrix has diagonal */ 27825ee9ba1cSJed Brown for (j=id[i]; j<id[i+1]; j++) { 27835ee9ba1cSJed Brown if (jd[j] == i) {ii[i+1]--;break;} 27845ee9ba1cSJed Brown } 278582094794SBarry Smith } 27869566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(ii[M],&jj)); 278782094794SBarry Smith cnt = 0; 278882094794SBarry Smith for (i=0; i<M; i++) { 278982094794SBarry Smith for (j=io[i]; j<io[i+1]; j++) { 279082094794SBarry Smith if (garray[jo[j]] > rstart) break; 279182094794SBarry Smith jj[cnt++] = garray[jo[j]]; 279282094794SBarry Smith } 279382094794SBarry Smith for (k=id[i]; k<id[i+1]; k++) { 27945ee9ba1cSJed Brown if (jd[k] != i) { 279582094794SBarry Smith jj[cnt++] = rstart + jd[k]; 279682094794SBarry Smith } 27975ee9ba1cSJed Brown } 279882094794SBarry Smith for (; j<io[i+1]; j++) { 279982094794SBarry Smith jj[cnt++] = garray[jo[j]]; 280082094794SBarry Smith } 280182094794SBarry Smith } 28029566063dSJacob Faibussowitsch PetscCall(MatCreateMPIAdj(PetscObjectComm((PetscObject)B),M,B->cmap->N/B->rmap->bs,ii,jj,NULL,adj)); 280382094794SBarry Smith PetscFunctionReturn(0); 280482094794SBarry Smith } 280582094794SBarry Smith 2806c6db04a5SJed Brown #include <../src/mat/impls/aij/mpi/mpiaij.h> 280762471d69SBarry Smith 2808cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_SeqBAIJ_SeqAIJ(Mat,MatType,MatReuse,Mat*); 2809b2573a8aSBarry Smith 2810cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIBAIJ_MPIAIJ(Mat A,MatType newtype,MatReuse reuse,Mat *newmat) 281162471d69SBarry Smith { 281262471d69SBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 281385a69837SSatish Balay Mat_MPIAIJ *b; 28145f80ce2aSJacob Faibussowitsch Mat B; 281562471d69SBarry Smith 281662471d69SBarry Smith PetscFunctionBegin; 28175f80ce2aSJacob Faibussowitsch PetscCheck(A->assembled,PetscObjectComm((PetscObject)A),PETSC_ERR_SUP,"Matrix must be assembled"); 281862471d69SBarry Smith 28190f6d62edSLisandro Dalcin if (reuse == MAT_REUSE_MATRIX) { 28200f6d62edSLisandro Dalcin B = *newmat; 28210f6d62edSLisandro Dalcin } else { 28229566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)A),&B)); 28239566063dSJacob Faibussowitsch PetscCall(MatSetType(B,MATMPIAIJ)); 28249566063dSJacob Faibussowitsch PetscCall(MatSetSizes(B,A->rmap->n,A->cmap->n,A->rmap->N,A->cmap->N)); 28259566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizes(B,A->rmap->bs,A->cmap->bs)); 28269566063dSJacob Faibussowitsch PetscCall(MatSeqAIJSetPreallocation(B,0,NULL)); 28279566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(B,0,NULL,0,NULL)); 28280f6d62edSLisandro Dalcin } 282962471d69SBarry Smith b = (Mat_MPIAIJ*) B->data; 283062471d69SBarry Smith 28310f6d62edSLisandro Dalcin if (reuse == MAT_REUSE_MATRIX) { 28329566063dSJacob Faibussowitsch PetscCall(MatConvert_SeqBAIJ_SeqAIJ(a->A, MATSEQAIJ, MAT_REUSE_MATRIX, &b->A)); 28339566063dSJacob Faibussowitsch PetscCall(MatConvert_SeqBAIJ_SeqAIJ(a->B, MATSEQAIJ, MAT_REUSE_MATRIX, &b->B)); 28340f6d62edSLisandro Dalcin } else { 28359566063dSJacob Faibussowitsch PetscCall(MatDestroy(&b->A)); 28369566063dSJacob Faibussowitsch PetscCall(MatDestroy(&b->B)); 28379566063dSJacob Faibussowitsch PetscCall(MatDisAssemble_MPIBAIJ(A)); 28389566063dSJacob Faibussowitsch PetscCall(MatConvert_SeqBAIJ_SeqAIJ(a->A, MATSEQAIJ, MAT_INITIAL_MATRIX, &b->A)); 28399566063dSJacob Faibussowitsch PetscCall(MatConvert_SeqBAIJ_SeqAIJ(a->B, MATSEQAIJ, MAT_INITIAL_MATRIX, &b->B)); 28409566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY)); 28419566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY)); 28420f6d62edSLisandro Dalcin } 28439566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY)); 28449566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY)); 28450f6d62edSLisandro Dalcin 2846511c6705SHong Zhang if (reuse == MAT_INPLACE_MATRIX) { 28479566063dSJacob Faibussowitsch PetscCall(MatHeaderReplace(A,&B)); 284862471d69SBarry Smith } else { 284962471d69SBarry Smith *newmat = B; 285062471d69SBarry Smith } 285162471d69SBarry Smith PetscFunctionReturn(0); 285262471d69SBarry Smith } 285362471d69SBarry Smith 28540bad9183SKris Buschelman /*MC 2855fafad747SKris Buschelman MATMPIBAIJ - MATMPIBAIJ = "mpibaij" - A matrix type to be used for distributed block sparse matrices. 28560bad9183SKris Buschelman 28570bad9183SKris Buschelman Options Database Keys: 28588c07d4e3SBarry Smith + -mat_type mpibaij - sets the matrix type to "mpibaij" during a call to MatSetFromOptions() 28598c07d4e3SBarry Smith . -mat_block_size <bs> - set the blocksize used to store the matrix 28606679dcc1SBarry Smith . -mat_baij_mult_version version - indicate the version of the matrix-vector product to use (0 often indicates using BLAS) 286167b8a455SSatish Balay - -mat_use_hash_table <fact> - set hash table factor 28620bad9183SKris Buschelman 28630bad9183SKris Buschelman Level: beginner 28640cd7f59aSBarry Smith 28650cd7f59aSBarry Smith Notes: 28660cd7f59aSBarry Smith MatSetOptions(,MAT_STRUCTURE_ONLY,PETSC_TRUE) may be called for this matrix type. In this no 28670cd7f59aSBarry Smith space is allocated for the nonzero entries and any entries passed with MatSetValues() are ignored 28680bad9183SKris Buschelman 2869db781477SPatrick Sanan .seealso: `MatCreateBAIJ` 28700bad9183SKris Buschelman M*/ 28710bad9183SKris Buschelman 2872cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIBAIJ_MPIBSTRM(Mat,MatType,MatReuse,Mat*); 2873c0cdd4a1SDahai Guo 28748cc058d9SJed Brown PETSC_EXTERN PetscErrorCode MatCreate_MPIBAIJ(Mat B) 2875273d9f13SBarry Smith { 2876273d9f13SBarry Smith Mat_MPIBAIJ *b; 287794ae4db5SBarry Smith PetscBool flg = PETSC_FALSE; 2878273d9f13SBarry Smith 2879273d9f13SBarry Smith PetscFunctionBegin; 28809566063dSJacob Faibussowitsch PetscCall(PetscNewLog(B,&b)); 288182502324SSatish Balay B->data = (void*)b; 288282502324SSatish Balay 28839566063dSJacob Faibussowitsch PetscCall(PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps))); 2884273d9f13SBarry Smith B->assembled = PETSC_FALSE; 2885273d9f13SBarry Smith 2886273d9f13SBarry Smith B->insertmode = NOT_SET_VALUES; 28879566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)B),&b->rank)); 28889566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)B),&b->size)); 2889273d9f13SBarry Smith 2890273d9f13SBarry Smith /* build local table of row and column ownerships */ 28919566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(b->size+1,&b->rangebs)); 2892273d9f13SBarry Smith 2893273d9f13SBarry Smith /* build cache for off array entries formed */ 28949566063dSJacob Faibussowitsch PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)B),1,&B->stash)); 289526fbe8dcSKarl Rupp 2896273d9f13SBarry Smith b->donotstash = PETSC_FALSE; 28970298fd71SBarry Smith b->colmap = NULL; 28980298fd71SBarry Smith b->garray = NULL; 2899273d9f13SBarry Smith b->roworiented = PETSC_TRUE; 2900273d9f13SBarry Smith 2901273d9f13SBarry Smith /* stuff used in block assembly */ 2902f4259b30SLisandro Dalcin b->barray = NULL; 2903273d9f13SBarry Smith 2904273d9f13SBarry Smith /* stuff used for matrix vector multiply */ 2905f4259b30SLisandro Dalcin b->lvec = NULL; 2906f4259b30SLisandro Dalcin b->Mvctx = NULL; 2907273d9f13SBarry Smith 2908273d9f13SBarry Smith /* stuff for MatGetRow() */ 2909f4259b30SLisandro Dalcin b->rowindices = NULL; 2910f4259b30SLisandro Dalcin b->rowvalues = NULL; 2911273d9f13SBarry Smith b->getrowactive = PETSC_FALSE; 2912273d9f13SBarry Smith 2913273d9f13SBarry Smith /* hash table stuff */ 2914f4259b30SLisandro Dalcin b->ht = NULL; 2915f4259b30SLisandro Dalcin b->hd = NULL; 2916273d9f13SBarry Smith b->ht_size = 0; 2917273d9f13SBarry Smith b->ht_flag = PETSC_FALSE; 2918273d9f13SBarry Smith b->ht_fact = 0; 2919273d9f13SBarry Smith b->ht_total_ct = 0; 2920273d9f13SBarry Smith b->ht_insert_ct = 0; 2921273d9f13SBarry Smith 29227dae84e0SHong Zhang /* stuff for MatCreateSubMatrices_MPIBAIJ_local() */ 29237a868f3eSHong Zhang b->ijonly = PETSC_FALSE; 29247a868f3eSHong Zhang 29259566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpibaij_mpiadj_C",MatConvert_MPIBAIJ_MPIAdj)); 29269566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpibaij_mpiaij_C",MatConvert_MPIBAIJ_MPIAIJ)); 29279566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpibaij_mpisbaij_C",MatConvert_MPIBAIJ_MPISBAIJ)); 29287ea3e4caSstefano_zampini #if defined(PETSC_HAVE_HYPRE) 29299566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpibaij_hypre_C",MatConvert_AIJ_HYPRE)); 29307ea3e4caSstefano_zampini #endif 29319566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatStoreValues_C",MatStoreValues_MPIBAIJ)); 29329566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatRetrieveValues_C",MatRetrieveValues_MPIBAIJ)); 29339566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatMPIBAIJSetPreallocation_C",MatMPIBAIJSetPreallocation_MPIBAIJ)); 29349566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatMPIBAIJSetPreallocationCSR_C",MatMPIBAIJSetPreallocationCSR_MPIBAIJ)); 29359566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatDiagonalScaleLocal_C",MatDiagonalScaleLocal_MPIBAIJ)); 29369566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatSetHashTableFactor_C",MatSetHashTableFactor_MPIBAIJ)); 29379566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpibaij_is_C",MatConvert_XAIJ_IS)); 29389566063dSJacob Faibussowitsch PetscCall(PetscObjectChangeTypeName((PetscObject)B,MATMPIBAIJ)); 293994ae4db5SBarry Smith 2940d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)B),NULL,"Options for loading MPIBAIJ matrix 1","Mat"); 29419566063dSJacob Faibussowitsch PetscCall(PetscOptionsName("-mat_use_hash_table","Use hash table to save time in constructing matrix","MatSetOption",&flg)); 294294ae4db5SBarry Smith if (flg) { 294394ae4db5SBarry Smith PetscReal fact = 1.39; 29449566063dSJacob Faibussowitsch PetscCall(MatSetOption(B,MAT_USE_HASH_TABLE,PETSC_TRUE)); 29459566063dSJacob Faibussowitsch PetscCall(PetscOptionsReal("-mat_use_hash_table","Use hash table factor","MatMPIBAIJSetHashTableFactor",fact,&fact,NULL)); 294694ae4db5SBarry Smith if (fact <= 1.0) fact = 1.39; 29479566063dSJacob Faibussowitsch PetscCall(MatMPIBAIJSetHashTableFactor(B,fact)); 29489566063dSJacob Faibussowitsch PetscCall(PetscInfo(B,"Hash table Factor used %5.2g\n",(double)fact)); 294994ae4db5SBarry Smith } 2950d0609cedSBarry Smith PetscOptionsEnd(); 2951273d9f13SBarry Smith PetscFunctionReturn(0); 2952273d9f13SBarry Smith } 2953273d9f13SBarry Smith 2954209238afSKris Buschelman /*MC 2955002d173eSKris Buschelman MATBAIJ - MATBAIJ = "baij" - A matrix type to be used for block sparse matrices. 2956209238afSKris Buschelman 2957209238afSKris Buschelman This matrix type is identical to MATSEQBAIJ when constructed with a single process communicator, 2958209238afSKris Buschelman and MATMPIBAIJ otherwise. 2959209238afSKris Buschelman 2960209238afSKris Buschelman Options Database Keys: 2961209238afSKris Buschelman . -mat_type baij - sets the matrix type to "baij" during a call to MatSetFromOptions() 2962209238afSKris Buschelman 2963209238afSKris Buschelman Level: beginner 2964209238afSKris Buschelman 2965c2e3fba1SPatrick Sanan .seealso: `MatCreateBAIJ()`, `MATSEQBAIJ`, `MATMPIBAIJ`, `MatMPIBAIJSetPreallocation()`, `MatMPIBAIJSetPreallocationCSR()` 2966209238afSKris Buschelman M*/ 2967209238afSKris Buschelman 2968273d9f13SBarry Smith /*@C 2969aac34f13SBarry Smith MatMPIBAIJSetPreallocation - Allocates memory for a sparse parallel matrix in block AIJ format 2970273d9f13SBarry Smith (block compressed row). For good matrix assembly performance 2971273d9f13SBarry Smith the user should preallocate the matrix storage by setting the parameters 2972273d9f13SBarry Smith d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 2973273d9f13SBarry Smith performance can be increased by more than a factor of 50. 2974273d9f13SBarry Smith 2975273d9f13SBarry Smith Collective on Mat 2976273d9f13SBarry Smith 2977273d9f13SBarry Smith Input Parameters: 29781c4f3114SJed Brown + B - the matrix 2979bb7ae925SBarry Smith . bs - size of block, the blocks are ALWAYS square. One can use MatSetBlockSizes() to set a different row and column blocksize but the row 2980bb7ae925SBarry Smith blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with MatCreateVecs() 2981273d9f13SBarry Smith . d_nz - number of block nonzeros per block row in diagonal portion of local 2982273d9f13SBarry Smith submatrix (same for all local rows) 2983273d9f13SBarry Smith . d_nnz - array containing the number of block nonzeros in the various block rows 2984273d9f13SBarry Smith of the in diagonal portion of the local (possibly different for each block 29850298fd71SBarry Smith row) or NULL. If you plan to factor the matrix you must leave room for the diagonal entry and 298695742e49SBarry Smith set it even if it is zero. 2987273d9f13SBarry Smith . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 2988273d9f13SBarry Smith submatrix (same for all local rows). 2989273d9f13SBarry Smith - o_nnz - array containing the number of nonzeros in the various block rows of the 2990273d9f13SBarry Smith off-diagonal portion of the local submatrix (possibly different for 29910298fd71SBarry Smith each block row) or NULL. 2992273d9f13SBarry Smith 299349a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 2994273d9f13SBarry Smith 2995273d9f13SBarry Smith Options Database Keys: 29968c07d4e3SBarry Smith + -mat_block_size - size of the blocks to use 299767b8a455SSatish Balay - -mat_use_hash_table <fact> - set hash table factor 2998273d9f13SBarry Smith 2999273d9f13SBarry Smith Notes: 3000273d9f13SBarry Smith If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one processor 3001273d9f13SBarry Smith than it must be used on all processors that share the object for that argument. 3002273d9f13SBarry Smith 3003273d9f13SBarry Smith Storage Information: 3004273d9f13SBarry Smith For a square global matrix we define each processor's diagonal portion 3005273d9f13SBarry Smith to be its local rows and the corresponding columns (a square submatrix); 3006273d9f13SBarry Smith each processor's off-diagonal portion encompasses the remainder of the 3007273d9f13SBarry Smith local matrix (a rectangular submatrix). 3008273d9f13SBarry Smith 3009273d9f13SBarry Smith The user can specify preallocated storage for the diagonal part of 3010273d9f13SBarry Smith the local submatrix with either d_nz or d_nnz (not both). Set 30110298fd71SBarry Smith d_nz=PETSC_DEFAULT and d_nnz=NULL for PETSc to control dynamic 3012273d9f13SBarry Smith memory allocation. Likewise, specify preallocated storage for the 3013273d9f13SBarry Smith off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 3014273d9f13SBarry Smith 3015273d9f13SBarry Smith Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 3016273d9f13SBarry Smith the figure below we depict these three local rows and all columns (0-11). 3017273d9f13SBarry Smith 3018273d9f13SBarry Smith .vb 3019273d9f13SBarry Smith 0 1 2 3 4 5 6 7 8 9 10 11 3020a4b1a0f6SJed Brown -------------------------- 3021273d9f13SBarry Smith row 3 |o o o d d d o o o o o o 3022273d9f13SBarry Smith row 4 |o o o d d d o o o o o o 3023273d9f13SBarry Smith row 5 |o o o d d d o o o o o o 3024a4b1a0f6SJed Brown -------------------------- 3025273d9f13SBarry Smith .ve 3026273d9f13SBarry Smith 3027273d9f13SBarry Smith Thus, any entries in the d locations are stored in the d (diagonal) 3028273d9f13SBarry Smith submatrix, and any entries in the o locations are stored in the 3029273d9f13SBarry Smith o (off-diagonal) submatrix. Note that the d and the o submatrices are 3030273d9f13SBarry Smith stored simply in the MATSEQBAIJ format for compressed row storage. 3031273d9f13SBarry Smith 3032273d9f13SBarry Smith Now d_nz should indicate the number of block nonzeros per row in the d matrix, 3033273d9f13SBarry Smith and o_nz should indicate the number of block nonzeros per row in the o matrix. 3034273d9f13SBarry Smith In general, for PDE problems in which most nonzeros are near the diagonal, 3035273d9f13SBarry Smith one expects d_nz >> o_nz. For large problems you MUST preallocate memory 3036273d9f13SBarry Smith or you will get TERRIBLE performance; see the users' manual chapter on 3037273d9f13SBarry Smith matrices. 3038273d9f13SBarry Smith 3039aa95bbe8SBarry Smith You can call MatGetInfo() to get information on how effective the preallocation was; 3040aa95bbe8SBarry Smith for example the fields mallocs,nz_allocated,nz_used,nz_unneeded; 3041aa95bbe8SBarry Smith You can also run with the option -info and look for messages with the string 3042aa95bbe8SBarry Smith malloc in them to see if additional memory allocation was needed. 3043aa95bbe8SBarry Smith 3044273d9f13SBarry Smith Level: intermediate 3045273d9f13SBarry Smith 3046db781477SPatrick Sanan .seealso: `MatCreate()`, `MatCreateSeqBAIJ()`, `MatSetValues()`, `MatCreateBAIJ()`, `MatMPIBAIJSetPreallocationCSR()`, `PetscSplitOwnership()` 3047273d9f13SBarry Smith @*/ 30487087cfbeSBarry Smith PetscErrorCode MatMPIBAIJSetPreallocation(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[]) 3049273d9f13SBarry Smith { 3050273d9f13SBarry Smith PetscFunctionBegin; 30516ba663aaSJed Brown PetscValidHeaderSpecific(B,MAT_CLASSID,1); 30526ba663aaSJed Brown PetscValidType(B,1); 30536ba663aaSJed Brown PetscValidLogicalCollectiveInt(B,bs,2); 3054cac4c232SBarry Smith PetscTryMethod(B,"MatMPIBAIJSetPreallocation_C",(Mat,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[]),(B,bs,d_nz,d_nnz,o_nz,o_nnz)); 3055273d9f13SBarry Smith PetscFunctionReturn(0); 3056273d9f13SBarry Smith } 3057273d9f13SBarry Smith 305879bdfe76SSatish Balay /*@C 305969b1f4b7SBarry Smith MatCreateBAIJ - Creates a sparse parallel matrix in block AIJ format 306079bdfe76SSatish Balay (block compressed row). For good matrix assembly performance 306179bdfe76SSatish Balay the user should preallocate the matrix storage by setting the parameters 306279bdfe76SSatish Balay d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 306379bdfe76SSatish Balay performance can be increased by more than a factor of 50. 306479bdfe76SSatish Balay 3065d083f849SBarry Smith Collective 3066db81eaa0SLois Curfman McInnes 306779bdfe76SSatish Balay Input Parameters: 3068db81eaa0SLois Curfman McInnes + comm - MPI communicator 3069bb7ae925SBarry Smith . bs - size of block, the blocks are ALWAYS square. One can use MatSetBlockSizes() to set a different row and column blocksize but the row 3070bb7ae925SBarry Smith blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with MatCreateVecs() 307179bdfe76SSatish Balay . m - number of local rows (or PETSC_DECIDE to have calculated if M is given) 307292e8d321SLois Curfman McInnes This value should be the same as the local size used in creating the 307392e8d321SLois Curfman McInnes y vector for the matrix-vector product y = Ax. 307492e8d321SLois Curfman McInnes . n - number of local columns (or PETSC_DECIDE to have calculated if N is given) 307592e8d321SLois Curfman McInnes This value should be the same as the local size used in creating the 307692e8d321SLois Curfman McInnes x vector for the matrix-vector product y = Ax. 3077be79a94dSBarry Smith . M - number of global rows (or PETSC_DETERMINE to have calculated if m is given) 3078be79a94dSBarry Smith . N - number of global columns (or PETSC_DETERMINE to have calculated if n is given) 307947a75d0bSBarry Smith . d_nz - number of nonzero blocks per block row in diagonal portion of local 308079bdfe76SSatish Balay submatrix (same for all local rows) 308147a75d0bSBarry Smith . d_nnz - array containing the number of nonzero blocks in the various block rows 308292e8d321SLois Curfman McInnes of the in diagonal portion of the local (possibly different for each block 30830298fd71SBarry Smith row) or NULL. If you plan to factor the matrix you must leave room for the diagonal entry 308495742e49SBarry Smith and set it even if it is zero. 308547a75d0bSBarry Smith . o_nz - number of nonzero blocks per block row in the off-diagonal portion of local 308679bdfe76SSatish Balay submatrix (same for all local rows). 308747a75d0bSBarry Smith - o_nnz - array containing the number of nonzero blocks in the various block rows of the 308892e8d321SLois Curfman McInnes off-diagonal portion of the local submatrix (possibly different for 30890298fd71SBarry Smith each block row) or NULL. 309079bdfe76SSatish Balay 309179bdfe76SSatish Balay Output Parameter: 309279bdfe76SSatish Balay . A - the matrix 309379bdfe76SSatish Balay 3094db81eaa0SLois Curfman McInnes Options Database Keys: 30958c07d4e3SBarry Smith + -mat_block_size - size of the blocks to use 309667b8a455SSatish Balay - -mat_use_hash_table <fact> - set hash table factor 30973ffaccefSLois Curfman McInnes 3098175b88e8SBarry Smith It is recommended that one use the MatCreate(), MatSetType() and/or MatSetFromOptions(), 3099f6f02116SRichard Tran Mills MatXXXXSetPreallocation() paradigm instead of this routine directly. 3100175b88e8SBarry Smith [MatXXXXSetPreallocation() is, for example, MatSeqAIJSetPreallocation] 3101175b88e8SBarry Smith 3102b259b22eSLois Curfman McInnes Notes: 310349a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 310449a6f317SBarry Smith 310547a75d0bSBarry Smith A nonzero block is any block that as 1 or more nonzeros in it 310647a75d0bSBarry Smith 310779bdfe76SSatish Balay The user MUST specify either the local or global matrix dimensions 310879bdfe76SSatish Balay (possibly both). 310979bdfe76SSatish Balay 3110be79a94dSBarry Smith If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one processor 3111be79a94dSBarry Smith than it must be used on all processors that share the object for that argument. 3112be79a94dSBarry Smith 311379bdfe76SSatish Balay Storage Information: 311479bdfe76SSatish Balay For a square global matrix we define each processor's diagonal portion 311579bdfe76SSatish Balay to be its local rows and the corresponding columns (a square submatrix); 311679bdfe76SSatish Balay each processor's off-diagonal portion encompasses the remainder of the 311779bdfe76SSatish Balay local matrix (a rectangular submatrix). 311879bdfe76SSatish Balay 311979bdfe76SSatish Balay The user can specify preallocated storage for the diagonal part of 312079bdfe76SSatish Balay the local submatrix with either d_nz or d_nnz (not both). Set 31210298fd71SBarry Smith d_nz=PETSC_DEFAULT and d_nnz=NULL for PETSc to control dynamic 312279bdfe76SSatish Balay memory allocation. Likewise, specify preallocated storage for the 312379bdfe76SSatish Balay off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 312479bdfe76SSatish Balay 312579bdfe76SSatish Balay Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 312679bdfe76SSatish Balay the figure below we depict these three local rows and all columns (0-11). 312779bdfe76SSatish Balay 3128db81eaa0SLois Curfman McInnes .vb 3129db81eaa0SLois Curfman McInnes 0 1 2 3 4 5 6 7 8 9 10 11 3130a4b1a0f6SJed Brown -------------------------- 3131db81eaa0SLois Curfman McInnes row 3 |o o o d d d o o o o o o 3132db81eaa0SLois Curfman McInnes row 4 |o o o d d d o o o o o o 3133db81eaa0SLois Curfman McInnes row 5 |o o o d d d o o o o o o 3134a4b1a0f6SJed Brown -------------------------- 3135db81eaa0SLois Curfman McInnes .ve 313679bdfe76SSatish Balay 313779bdfe76SSatish Balay Thus, any entries in the d locations are stored in the d (diagonal) 313879bdfe76SSatish Balay submatrix, and any entries in the o locations are stored in the 313979bdfe76SSatish Balay o (off-diagonal) submatrix. Note that the d and the o submatrices are 314057b952d6SSatish Balay stored simply in the MATSEQBAIJ format for compressed row storage. 314179bdfe76SSatish Balay 3142d64ed03dSBarry Smith Now d_nz should indicate the number of block nonzeros per row in the d matrix, 3143d64ed03dSBarry Smith and o_nz should indicate the number of block nonzeros per row in the o matrix. 314479bdfe76SSatish Balay In general, for PDE problems in which most nonzeros are near the diagonal, 314592e8d321SLois Curfman McInnes one expects d_nz >> o_nz. For large problems you MUST preallocate memory 314692e8d321SLois Curfman McInnes or you will get TERRIBLE performance; see the users' manual chapter on 31476da5968aSLois Curfman McInnes matrices. 314879bdfe76SSatish Balay 3149027ccd11SLois Curfman McInnes Level: intermediate 3150027ccd11SLois Curfman McInnes 3151db781477SPatrick Sanan .seealso: `MatCreate()`, `MatCreateSeqBAIJ()`, `MatSetValues()`, `MatCreateBAIJ()`, `MatMPIBAIJSetPreallocation()`, `MatMPIBAIJSetPreallocationCSR()` 315279bdfe76SSatish Balay @*/ 315369b1f4b7SBarry Smith PetscErrorCode MatCreateBAIJ(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[],Mat *A) 315479bdfe76SSatish Balay { 3155b24ad042SBarry Smith PetscMPIInt size; 315679bdfe76SSatish Balay 3157d64ed03dSBarry Smith PetscFunctionBegin; 31589566063dSJacob Faibussowitsch PetscCall(MatCreate(comm,A)); 31599566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*A,m,n,M,N)); 31609566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm,&size)); 3161273d9f13SBarry Smith if (size > 1) { 31629566063dSJacob Faibussowitsch PetscCall(MatSetType(*A,MATMPIBAIJ)); 31639566063dSJacob Faibussowitsch PetscCall(MatMPIBAIJSetPreallocation(*A,bs,d_nz,d_nnz,o_nz,o_nnz)); 3164273d9f13SBarry Smith } else { 31659566063dSJacob Faibussowitsch PetscCall(MatSetType(*A,MATSEQBAIJ)); 31669566063dSJacob Faibussowitsch PetscCall(MatSeqBAIJSetPreallocation(*A,bs,d_nz,d_nnz)); 31673914022bSBarry Smith } 31683a40ed3dSBarry Smith PetscFunctionReturn(0); 316979bdfe76SSatish Balay } 3170026e39d0SSatish Balay 31716849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIBAIJ(Mat matin,MatDuplicateOption cpvalues,Mat *newmat) 31720ac07820SSatish Balay { 31730ac07820SSatish Balay Mat mat; 31740ac07820SSatish Balay Mat_MPIBAIJ *a,*oldmat = (Mat_MPIBAIJ*)matin->data; 3175b24ad042SBarry Smith PetscInt len=0; 31760ac07820SSatish Balay 3177d64ed03dSBarry Smith PetscFunctionBegin; 3178f4259b30SLisandro Dalcin *newmat = NULL; 31799566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)matin),&mat)); 31809566063dSJacob Faibussowitsch PetscCall(MatSetSizes(mat,matin->rmap->n,matin->cmap->n,matin->rmap->N,matin->cmap->N)); 31819566063dSJacob Faibussowitsch PetscCall(MatSetType(mat,((PetscObject)matin)->type_name)); 31827fff6886SHong Zhang 3183d5f3da31SBarry Smith mat->factortype = matin->factortype; 3184273d9f13SBarry Smith mat->preallocated = PETSC_TRUE; 31850ac07820SSatish Balay mat->assembled = PETSC_TRUE; 31867fff6886SHong Zhang mat->insertmode = NOT_SET_VALUES; 31877fff6886SHong Zhang 3188273d9f13SBarry Smith a = (Mat_MPIBAIJ*)mat->data; 3189d0f46423SBarry Smith mat->rmap->bs = matin->rmap->bs; 31900ac07820SSatish Balay a->bs2 = oldmat->bs2; 31910ac07820SSatish Balay a->mbs = oldmat->mbs; 31920ac07820SSatish Balay a->nbs = oldmat->nbs; 31930ac07820SSatish Balay a->Mbs = oldmat->Mbs; 31940ac07820SSatish Balay a->Nbs = oldmat->Nbs; 31950ac07820SSatish Balay 31969566063dSJacob Faibussowitsch PetscCall(PetscLayoutReference(matin->rmap,&mat->rmap)); 31979566063dSJacob Faibussowitsch PetscCall(PetscLayoutReference(matin->cmap,&mat->cmap)); 3198899cda47SBarry Smith 31990ac07820SSatish Balay a->size = oldmat->size; 32000ac07820SSatish Balay a->rank = oldmat->rank; 3201aef5e8e0SSatish Balay a->donotstash = oldmat->donotstash; 3202aef5e8e0SSatish Balay a->roworiented = oldmat->roworiented; 3203f4259b30SLisandro Dalcin a->rowindices = NULL; 3204f4259b30SLisandro Dalcin a->rowvalues = NULL; 32050ac07820SSatish Balay a->getrowactive = PETSC_FALSE; 3206f4259b30SLisandro Dalcin a->barray = NULL; 3207899cda47SBarry Smith a->rstartbs = oldmat->rstartbs; 3208899cda47SBarry Smith a->rendbs = oldmat->rendbs; 3209899cda47SBarry Smith a->cstartbs = oldmat->cstartbs; 3210899cda47SBarry Smith a->cendbs = oldmat->cendbs; 32110ac07820SSatish Balay 3212133cdb44SSatish Balay /* hash table stuff */ 3213f4259b30SLisandro Dalcin a->ht = NULL; 3214f4259b30SLisandro Dalcin a->hd = NULL; 3215133cdb44SSatish Balay a->ht_size = 0; 3216133cdb44SSatish Balay a->ht_flag = oldmat->ht_flag; 321725fdafccSSatish Balay a->ht_fact = oldmat->ht_fact; 3218133cdb44SSatish Balay a->ht_total_ct = 0; 3219133cdb44SSatish Balay a->ht_insert_ct = 0; 3220133cdb44SSatish Balay 32219566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(a->rangebs,oldmat->rangebs,a->size+1)); 32220ac07820SSatish Balay if (oldmat->colmap) { 3223aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 32249566063dSJacob Faibussowitsch PetscCall(PetscTableCreateCopy(oldmat->colmap,&a->colmap)); 322548e59246SSatish Balay #else 32269566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(a->Nbs,&a->colmap)); 32279566063dSJacob Faibussowitsch PetscCall(PetscLogObjectMemory((PetscObject)mat,(a->Nbs)*sizeof(PetscInt))); 32289566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(a->colmap,oldmat->colmap,a->Nbs)); 322948e59246SSatish Balay #endif 3230f4259b30SLisandro Dalcin } else a->colmap = NULL; 32314beb1cfeSHong Zhang 32320ac07820SSatish Balay if (oldmat->garray && (len = ((Mat_SeqBAIJ*)(oldmat->B->data))->nbs)) { 32339566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(len,&a->garray)); 32349566063dSJacob Faibussowitsch PetscCall(PetscLogObjectMemory((PetscObject)mat,len*sizeof(PetscInt))); 32359566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(a->garray,oldmat->garray,len)); 3236f4259b30SLisandro Dalcin } else a->garray = NULL; 32370ac07820SSatish Balay 32389566063dSJacob Faibussowitsch PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)matin),matin->rmap->bs,&mat->bstash)); 32399566063dSJacob Faibussowitsch PetscCall(VecDuplicate(oldmat->lvec,&a->lvec)); 32409566063dSJacob Faibussowitsch PetscCall(PetscLogObjectParent((PetscObject)mat,(PetscObject)a->lvec)); 32419566063dSJacob Faibussowitsch PetscCall(VecScatterCopy(oldmat->Mvctx,&a->Mvctx)); 32429566063dSJacob Faibussowitsch PetscCall(PetscLogObjectParent((PetscObject)mat,(PetscObject)a->Mvctx)); 32437fff6886SHong Zhang 32449566063dSJacob Faibussowitsch PetscCall(MatDuplicate(oldmat->A,cpvalues,&a->A)); 32459566063dSJacob Faibussowitsch PetscCall(PetscLogObjectParent((PetscObject)mat,(PetscObject)a->A)); 32469566063dSJacob Faibussowitsch PetscCall(MatDuplicate(oldmat->B,cpvalues,&a->B)); 32479566063dSJacob Faibussowitsch PetscCall(PetscLogObjectParent((PetscObject)mat,(PetscObject)a->B)); 32489566063dSJacob Faibussowitsch PetscCall(PetscFunctionListDuplicate(((PetscObject)matin)->qlist,&((PetscObject)mat)->qlist)); 32490ac07820SSatish Balay *newmat = mat; 32503a40ed3dSBarry Smith PetscFunctionReturn(0); 32510ac07820SSatish Balay } 325257b952d6SSatish Balay 3253618cc2edSLisandro Dalcin /* Used for both MPIBAIJ and MPISBAIJ matrices */ 3254b51a4376SLisandro Dalcin PetscErrorCode MatLoad_MPIBAIJ_Binary(Mat mat,PetscViewer viewer) 3255b51a4376SLisandro Dalcin { 3256b51a4376SLisandro Dalcin PetscInt header[4],M,N,nz,bs,m,n,mbs,nbs,rows,cols,sum,i,j,k; 3257b51a4376SLisandro Dalcin PetscInt *rowidxs,*colidxs,rs,cs,ce; 3258b51a4376SLisandro Dalcin PetscScalar *matvals; 3259b51a4376SLisandro Dalcin 3260b51a4376SLisandro Dalcin PetscFunctionBegin; 32619566063dSJacob Faibussowitsch PetscCall(PetscViewerSetUp(viewer)); 3262b51a4376SLisandro Dalcin 3263b51a4376SLisandro Dalcin /* read in matrix header */ 32649566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryRead(viewer,header,4,NULL,PETSC_INT)); 32655f80ce2aSJacob Faibussowitsch PetscCheck(header[0] == MAT_FILE_CLASSID,PetscObjectComm((PetscObject)viewer),PETSC_ERR_FILE_UNEXPECTED,"Not a matrix object in file"); 3266b51a4376SLisandro Dalcin M = header[1]; N = header[2]; nz = header[3]; 32675f80ce2aSJacob Faibussowitsch PetscCheck(M >= 0,PetscObjectComm((PetscObject)viewer),PETSC_ERR_FILE_UNEXPECTED,"Matrix row size (%" PetscInt_FMT ") in file is negative",M); 32685f80ce2aSJacob Faibussowitsch PetscCheck(N >= 0,PetscObjectComm((PetscObject)viewer),PETSC_ERR_FILE_UNEXPECTED,"Matrix column size (%" PetscInt_FMT ") in file is negative",N); 32695f80ce2aSJacob Faibussowitsch PetscCheck(nz >= 0,PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"Matrix stored in special format on disk, cannot load as MPIBAIJ"); 3270b51a4376SLisandro Dalcin 3271b51a4376SLisandro Dalcin /* set block sizes from the viewer's .info file */ 32729566063dSJacob Faibussowitsch PetscCall(MatLoad_Binary_BlockSizes(mat,viewer)); 3273618cc2edSLisandro Dalcin /* set local sizes if not set already */ 3274618cc2edSLisandro Dalcin if (mat->rmap->n < 0 && M == N) mat->rmap->n = mat->cmap->n; 3275618cc2edSLisandro Dalcin if (mat->cmap->n < 0 && M == N) mat->cmap->n = mat->rmap->n; 3276b51a4376SLisandro Dalcin /* set global sizes if not set already */ 3277b51a4376SLisandro Dalcin if (mat->rmap->N < 0) mat->rmap->N = M; 3278b51a4376SLisandro Dalcin if (mat->cmap->N < 0) mat->cmap->N = N; 32799566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(mat->rmap)); 32809566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(mat->cmap)); 3281b51a4376SLisandro Dalcin 3282b51a4376SLisandro Dalcin /* check if the matrix sizes are correct */ 32839566063dSJacob Faibussowitsch PetscCall(MatGetSize(mat,&rows,&cols)); 32845f80ce2aSJacob Faibussowitsch PetscCheck(M == rows && N == cols,PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED, "Matrix in file of different sizes (%" PetscInt_FMT ", %" PetscInt_FMT ") than the input matrix (%" PetscInt_FMT ", %" PetscInt_FMT ")",M,N,rows,cols); 32859566063dSJacob Faibussowitsch PetscCall(MatGetBlockSize(mat,&bs)); 32869566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(mat,&m,&n)); 32879566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetRange(mat->rmap,&rs,NULL)); 32889566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetRange(mat->cmap,&cs,&ce)); 3289b51a4376SLisandro Dalcin mbs = m/bs; nbs = n/bs; 3290b51a4376SLisandro Dalcin 3291b51a4376SLisandro Dalcin /* read in row lengths and build row indices */ 32929566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m+1,&rowidxs)); 32939566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryReadAll(viewer,rowidxs+1,m,PETSC_DECIDE,M,PETSC_INT)); 3294b51a4376SLisandro Dalcin rowidxs[0] = 0; for (i=0; i<m; i++) rowidxs[i+1] += rowidxs[i]; 32951c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&rowidxs[m],&sum,1,MPIU_INT,MPI_SUM,PetscObjectComm((PetscObject)viewer))); 32965f80ce2aSJacob Faibussowitsch PetscCheck(sum == nz,PetscObjectComm((PetscObject)viewer),PETSC_ERR_FILE_UNEXPECTED,"Inconsistent matrix data in file: nonzeros = %" PetscInt_FMT ", sum-row-lengths = %" PetscInt_FMT,nz,sum); 3297b51a4376SLisandro Dalcin 3298b51a4376SLisandro Dalcin /* read in column indices and matrix values */ 32999566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(rowidxs[m],&colidxs,rowidxs[m],&matvals)); 33009566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryReadAll(viewer,colidxs,rowidxs[m],PETSC_DETERMINE,PETSC_DETERMINE,PETSC_INT)); 33019566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryReadAll(viewer,matvals,rowidxs[m],PETSC_DETERMINE,PETSC_DETERMINE,PETSC_SCALAR)); 3302b51a4376SLisandro Dalcin 3303b51a4376SLisandro Dalcin { /* preallocate matrix storage */ 3304b51a4376SLisandro Dalcin PetscBT bt; /* helper bit set to count diagonal nonzeros */ 3305b51a4376SLisandro Dalcin PetscHSetI ht; /* helper hash set to count off-diagonal nonzeros */ 3306618cc2edSLisandro Dalcin PetscBool sbaij,done; 3307b51a4376SLisandro Dalcin PetscInt *d_nnz,*o_nnz; 3308b51a4376SLisandro Dalcin 33099566063dSJacob Faibussowitsch PetscCall(PetscBTCreate(nbs,&bt)); 33109566063dSJacob Faibussowitsch PetscCall(PetscHSetICreate(&ht)); 33119566063dSJacob Faibussowitsch PetscCall(PetscCalloc2(mbs,&d_nnz,mbs,&o_nnz)); 33129566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)mat,MATMPISBAIJ,&sbaij)); 3313b51a4376SLisandro Dalcin for (i=0; i<mbs; i++) { 33149566063dSJacob Faibussowitsch PetscCall(PetscBTMemzero(nbs,bt)); 33159566063dSJacob Faibussowitsch PetscCall(PetscHSetIClear(ht)); 3316618cc2edSLisandro Dalcin for (k=0; k<bs; k++) { 3317618cc2edSLisandro Dalcin PetscInt row = bs*i + k; 3318618cc2edSLisandro Dalcin for (j=rowidxs[row]; j<rowidxs[row+1]; j++) { 3319618cc2edSLisandro Dalcin PetscInt col = colidxs[j]; 3320618cc2edSLisandro Dalcin if (!sbaij || col >= row) { 3321618cc2edSLisandro Dalcin if (col >= cs && col < ce) { 3322618cc2edSLisandro Dalcin if (!PetscBTLookupSet(bt,(col-cs)/bs)) d_nnz[i]++; 3323b51a4376SLisandro Dalcin } else { 33249566063dSJacob Faibussowitsch PetscCall(PetscHSetIQueryAdd(ht,col/bs,&done)); 3325b51a4376SLisandro Dalcin if (done) o_nnz[i]++; 3326b51a4376SLisandro Dalcin } 3327b51a4376SLisandro Dalcin } 3328618cc2edSLisandro Dalcin } 3329618cc2edSLisandro Dalcin } 3330618cc2edSLisandro Dalcin } 33319566063dSJacob Faibussowitsch PetscCall(PetscBTDestroy(&bt)); 33329566063dSJacob Faibussowitsch PetscCall(PetscHSetIDestroy(&ht)); 33339566063dSJacob Faibussowitsch PetscCall(MatMPIBAIJSetPreallocation(mat,bs,0,d_nnz,0,o_nnz)); 33349566063dSJacob Faibussowitsch PetscCall(MatMPISBAIJSetPreallocation(mat,bs,0,d_nnz,0,o_nnz)); 33359566063dSJacob Faibussowitsch PetscCall(PetscFree2(d_nnz,o_nnz)); 3336b51a4376SLisandro Dalcin } 3337b51a4376SLisandro Dalcin 3338b51a4376SLisandro Dalcin /* store matrix values */ 3339b51a4376SLisandro Dalcin for (i=0; i<m; i++) { 3340b51a4376SLisandro Dalcin PetscInt row = rs + i, s = rowidxs[i], e = rowidxs[i+1]; 33419566063dSJacob Faibussowitsch PetscCall((*mat->ops->setvalues)(mat,1,&row,e-s,colidxs+s,matvals+s,INSERT_VALUES)); 3342b51a4376SLisandro Dalcin } 3343b51a4376SLisandro Dalcin 33449566063dSJacob Faibussowitsch PetscCall(PetscFree(rowidxs)); 33459566063dSJacob Faibussowitsch PetscCall(PetscFree2(colidxs,matvals)); 33469566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(mat,MAT_FINAL_ASSEMBLY)); 33479566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(mat,MAT_FINAL_ASSEMBLY)); 3348b51a4376SLisandro Dalcin PetscFunctionReturn(0); 3349b51a4376SLisandro Dalcin } 3350b51a4376SLisandro Dalcin 3351b51a4376SLisandro Dalcin PetscErrorCode MatLoad_MPIBAIJ(Mat mat,PetscViewer viewer) 33524683f7a4SShri Abhyankar { 33537f489da9SVaclav Hapla PetscBool isbinary; 33544683f7a4SShri Abhyankar 33554683f7a4SShri Abhyankar PetscFunctionBegin; 33569566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary)); 33575f80ce2aSJacob Faibussowitsch PetscCheck(isbinary,PetscObjectComm((PetscObject)viewer),PETSC_ERR_SUP,"Viewer type %s not yet supported for reading %s matrices",((PetscObject)viewer)->type_name,((PetscObject)mat)->type_name); 33589566063dSJacob Faibussowitsch PetscCall(MatLoad_MPIBAIJ_Binary(mat,viewer)); 33594683f7a4SShri Abhyankar PetscFunctionReturn(0); 33604683f7a4SShri Abhyankar } 33614683f7a4SShri Abhyankar 3362133cdb44SSatish Balay /*@ 3363133cdb44SSatish Balay MatMPIBAIJSetHashTableFactor - Sets the factor required to compute the size of the HashTable. 3364133cdb44SSatish Balay 3365133cdb44SSatish Balay Input Parameters: 3366a2b725a8SWilliam Gropp + mat - the matrix 3367a2b725a8SWilliam Gropp - fact - factor 3368133cdb44SSatish Balay 3369c5eb9154SBarry Smith Not Collective, each process can use a different factor 3370fee21e36SBarry Smith 33718c890885SBarry Smith Level: advanced 33728c890885SBarry Smith 3373133cdb44SSatish Balay Notes: 33748c07d4e3SBarry Smith This can also be set by the command line option: -mat_use_hash_table <fact> 3375133cdb44SSatish Balay 3376db781477SPatrick Sanan .seealso: `MatSetOption()` 3377133cdb44SSatish Balay @*/ 33787087cfbeSBarry Smith PetscErrorCode MatMPIBAIJSetHashTableFactor(Mat mat,PetscReal fact) 3379133cdb44SSatish Balay { 33805bf65638SKris Buschelman PetscFunctionBegin; 3381cac4c232SBarry Smith PetscTryMethod(mat,"MatSetHashTableFactor_C",(Mat,PetscReal),(mat,fact)); 33825bf65638SKris Buschelman PetscFunctionReturn(0); 33835bf65638SKris Buschelman } 33845bf65638SKris Buschelman 33857087cfbeSBarry Smith PetscErrorCode MatSetHashTableFactor_MPIBAIJ(Mat mat,PetscReal fact) 33865bf65638SKris Buschelman { 338725fdafccSSatish Balay Mat_MPIBAIJ *baij; 3388133cdb44SSatish Balay 3389133cdb44SSatish Balay PetscFunctionBegin; 3390133cdb44SSatish Balay baij = (Mat_MPIBAIJ*)mat->data; 3391133cdb44SSatish Balay baij->ht_fact = fact; 3392133cdb44SSatish Balay PetscFunctionReturn(0); 3393133cdb44SSatish Balay } 3394f2a5309cSSatish Balay 33959230625dSJed Brown PetscErrorCode MatMPIBAIJGetSeqBAIJ(Mat A,Mat *Ad,Mat *Ao,const PetscInt *colmap[]) 3396f2a5309cSSatish Balay { 3397f2a5309cSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 3398ab4d48faSStefano Zampini PetscBool flg; 33995fd66863SKarl Rupp 3400f2a5309cSSatish Balay PetscFunctionBegin; 34019566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)A,MATMPIBAIJ,&flg)); 34025f80ce2aSJacob Faibussowitsch PetscCheck(flg,PetscObjectComm((PetscObject)A),PETSC_ERR_SUP,"This function requires a MATMPIBAIJ matrix as input"); 340321e72a00SBarry Smith if (Ad) *Ad = a->A; 340421e72a00SBarry Smith if (Ao) *Ao = a->B; 340521e72a00SBarry Smith if (colmap) *colmap = a->garray; 3406f2a5309cSSatish Balay PetscFunctionReturn(0); 3407f2a5309cSSatish Balay } 340885535b8eSBarry Smith 340985535b8eSBarry Smith /* 341085535b8eSBarry Smith Special version for direct calls from Fortran (to eliminate two function call overheads 341185535b8eSBarry Smith */ 341285535b8eSBarry Smith #if defined(PETSC_HAVE_FORTRAN_CAPS) 341385535b8eSBarry Smith #define matmpibaijsetvaluesblocked_ MATMPIBAIJSETVALUESBLOCKED 341485535b8eSBarry Smith #elif !defined(PETSC_HAVE_FORTRAN_UNDERSCORE) 341585535b8eSBarry Smith #define matmpibaijsetvaluesblocked_ matmpibaijsetvaluesblocked 341685535b8eSBarry Smith #endif 341785535b8eSBarry Smith 341885535b8eSBarry Smith /*@C 341985535b8eSBarry Smith MatMPIBAIJSetValuesBlocked - Direct Fortran call to replace call to MatSetValuesBlocked() 342085535b8eSBarry Smith 342185535b8eSBarry Smith Collective on Mat 342285535b8eSBarry Smith 342385535b8eSBarry Smith Input Parameters: 342485535b8eSBarry Smith + mat - the matrix 342585535b8eSBarry Smith . min - number of input rows 342685535b8eSBarry Smith . im - input rows 342785535b8eSBarry Smith . nin - number of input columns 342885535b8eSBarry Smith . in - input columns 342985535b8eSBarry Smith . v - numerical values input 343085535b8eSBarry Smith - addvin - INSERT_VALUES or ADD_VALUES 343185535b8eSBarry Smith 343295452b02SPatrick Sanan Notes: 343395452b02SPatrick Sanan This has a complete copy of MatSetValuesBlocked_MPIBAIJ() which is terrible code un-reuse. 343485535b8eSBarry Smith 343585535b8eSBarry Smith Level: advanced 343685535b8eSBarry Smith 3437db781477SPatrick Sanan .seealso: `MatSetValuesBlocked()` 343885535b8eSBarry Smith @*/ 343985535b8eSBarry Smith PetscErrorCode matmpibaijsetvaluesblocked_(Mat *matin,PetscInt *min,const PetscInt im[],PetscInt *nin,const PetscInt in[],const MatScalar v[],InsertMode *addvin) 344085535b8eSBarry Smith { 344185535b8eSBarry Smith /* convert input arguments to C version */ 344285535b8eSBarry Smith Mat mat = *matin; 344385535b8eSBarry Smith PetscInt m = *min, n = *nin; 344485535b8eSBarry Smith InsertMode addv = *addvin; 344585535b8eSBarry Smith 344685535b8eSBarry Smith Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 344785535b8eSBarry Smith const MatScalar *value; 344885535b8eSBarry Smith MatScalar *barray = baij->barray; 3449ace3abfcSBarry Smith PetscBool roworiented = baij->roworiented; 345085535b8eSBarry Smith PetscInt i,j,ii,jj,row,col,rstart=baij->rstartbs; 345185535b8eSBarry Smith PetscInt rend=baij->rendbs,cstart=baij->cstartbs,stepval; 3452d0f46423SBarry Smith PetscInt cend=baij->cendbs,bs=mat->rmap->bs,bs2=baij->bs2; 345385535b8eSBarry Smith 345485535b8eSBarry Smith PetscFunctionBegin; 345585535b8eSBarry Smith /* tasks normally handled by MatSetValuesBlocked() */ 345626fbe8dcSKarl Rupp if (mat->insertmode == NOT_SET_VALUES) mat->insertmode = addv; 34575f80ce2aSJacob Faibussowitsch else PetscCheck(mat->insertmode == addv,PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Cannot mix add values and insert values"); 34585f80ce2aSJacob Faibussowitsch PetscCheck(!mat->factortype,PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Not for factored matrix"); 345985535b8eSBarry Smith if (mat->assembled) { 346085535b8eSBarry Smith mat->was_assembled = PETSC_TRUE; 346185535b8eSBarry Smith mat->assembled = PETSC_FALSE; 346285535b8eSBarry Smith } 34639566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(MAT_SetValues,mat,0,0,0)); 346485535b8eSBarry Smith 346585535b8eSBarry Smith if (!barray) { 34669566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(bs2,&barray)); 346785535b8eSBarry Smith baij->barray = barray; 346885535b8eSBarry Smith } 346985535b8eSBarry Smith 347026fbe8dcSKarl Rupp if (roworiented) stepval = (n-1)*bs; 347126fbe8dcSKarl Rupp else stepval = (m-1)*bs; 347226fbe8dcSKarl Rupp 347385535b8eSBarry Smith for (i=0; i<m; i++) { 347485535b8eSBarry Smith if (im[i] < 0) continue; 34756bdcaf15SBarry Smith PetscCheck(im[i] < baij->Mbs,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large, row %" PetscInt_FMT " max %" PetscInt_FMT,im[i],baij->Mbs-1); 347685535b8eSBarry Smith if (im[i] >= rstart && im[i] < rend) { 347785535b8eSBarry Smith row = im[i] - rstart; 347885535b8eSBarry Smith for (j=0; j<n; j++) { 347985535b8eSBarry Smith /* If NumCol = 1 then a copy is not required */ 348085535b8eSBarry Smith if ((roworiented) && (n == 1)) { 348185535b8eSBarry Smith barray = (MatScalar*)v + i*bs2; 348285535b8eSBarry Smith } else if ((!roworiented) && (m == 1)) { 348385535b8eSBarry Smith barray = (MatScalar*)v + j*bs2; 348485535b8eSBarry Smith } else { /* Here a copy is required */ 348585535b8eSBarry Smith if (roworiented) { 348685535b8eSBarry Smith value = v + i*(stepval+bs)*bs + j*bs; 348785535b8eSBarry Smith } else { 348885535b8eSBarry Smith value = v + j*(stepval+bs)*bs + i*bs; 348985535b8eSBarry Smith } 349085535b8eSBarry Smith for (ii=0; ii<bs; ii++,value+=stepval) { 349185535b8eSBarry Smith for (jj=0; jj<bs; jj++) { 349285535b8eSBarry Smith *barray++ = *value++; 349385535b8eSBarry Smith } 349485535b8eSBarry Smith } 349585535b8eSBarry Smith barray -=bs2; 349685535b8eSBarry Smith } 349785535b8eSBarry Smith 349885535b8eSBarry Smith if (in[j] >= cstart && in[j] < cend) { 349985535b8eSBarry Smith col = in[j] - cstart; 35009566063dSJacob Faibussowitsch PetscCall(MatSetValuesBlocked_SeqBAIJ_Inlined(baij->A,row,col,barray,addv,im[i],in[j])); 3501f7d195e4SLawrence Mitchell } else if (in[j] < 0) { 3502f7d195e4SLawrence Mitchell continue; 3503f7d195e4SLawrence Mitchell } else { 3504f7d195e4SLawrence Mitchell PetscCheck(in[j] < baij->Nbs,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large, col %" PetscInt_FMT " max %" PetscInt_FMT,in[j],baij->Nbs-1); 350585535b8eSBarry Smith if (mat->was_assembled) { 350685535b8eSBarry Smith if (!baij->colmap) { 35079566063dSJacob Faibussowitsch PetscCall(MatCreateColmap_MPIBAIJ_Private(mat)); 350885535b8eSBarry Smith } 350985535b8eSBarry Smith 351085535b8eSBarry Smith #if defined(PETSC_USE_DEBUG) 351185535b8eSBarry Smith #if defined(PETSC_USE_CTABLE) 351285535b8eSBarry Smith { PetscInt data; 35139566063dSJacob Faibussowitsch PetscCall(PetscTableFind(baij->colmap,in[j]+1,&data)); 351408401ef6SPierre Jolivet PetscCheck((data - 1) % bs == 0,PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap"); 351585535b8eSBarry Smith } 351685535b8eSBarry Smith #else 351708401ef6SPierre Jolivet PetscCheck((baij->colmap[in[j]] - 1) % bs == 0,PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap"); 351885535b8eSBarry Smith #endif 351985535b8eSBarry Smith #endif 352085535b8eSBarry Smith #if defined(PETSC_USE_CTABLE) 35219566063dSJacob Faibussowitsch PetscCall(PetscTableFind(baij->colmap,in[j]+1,&col)); 352285535b8eSBarry Smith col = (col - 1)/bs; 352385535b8eSBarry Smith #else 352485535b8eSBarry Smith col = (baij->colmap[in[j]] - 1)/bs; 352585535b8eSBarry Smith #endif 352685535b8eSBarry Smith if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) { 35279566063dSJacob Faibussowitsch PetscCall(MatDisAssemble_MPIBAIJ(mat)); 352885535b8eSBarry Smith col = in[j]; 352985535b8eSBarry Smith } 353026fbe8dcSKarl Rupp } else col = in[j]; 35319566063dSJacob Faibussowitsch PetscCall(MatSetValuesBlocked_SeqBAIJ_Inlined(baij->B,row,col,barray,addv,im[i],in[j])); 353285535b8eSBarry Smith } 353385535b8eSBarry Smith } 353485535b8eSBarry Smith } else { 353585535b8eSBarry Smith if (!baij->donotstash) { 353685535b8eSBarry Smith if (roworiented) { 35379566063dSJacob Faibussowitsch PetscCall(MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i)); 353885535b8eSBarry Smith } else { 35399566063dSJacob Faibussowitsch PetscCall(MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i)); 354085535b8eSBarry Smith } 354185535b8eSBarry Smith } 354285535b8eSBarry Smith } 354385535b8eSBarry Smith } 354485535b8eSBarry Smith 354585535b8eSBarry Smith /* task normally handled by MatSetValuesBlocked() */ 35469566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(MAT_SetValues,mat,0,0,0)); 354785535b8eSBarry Smith PetscFunctionReturn(0); 354885535b8eSBarry Smith } 3549dfb205c3SBarry Smith 3550dfb205c3SBarry Smith /*@ 3551483a2f95SBarry Smith MatCreateMPIBAIJWithArrays - creates a MPI BAIJ matrix using arrays that contain in standard block 3552dfb205c3SBarry Smith CSR format the local rows. 3553dfb205c3SBarry Smith 3554d083f849SBarry Smith Collective 3555dfb205c3SBarry Smith 3556dfb205c3SBarry Smith Input Parameters: 3557dfb205c3SBarry Smith + comm - MPI communicator 3558dfb205c3SBarry Smith . bs - the block size, only a block size of 1 is supported 3559dfb205c3SBarry Smith . m - number of local rows (Cannot be PETSC_DECIDE) 3560dfb205c3SBarry Smith . n - This value should be the same as the local size used in creating the 3561dfb205c3SBarry Smith x vector for the matrix-vector product y = Ax. (or PETSC_DECIDE to have 3562dfb205c3SBarry Smith calculated if N is given) For square matrices n is almost always m. 3563dfb205c3SBarry Smith . M - number of global rows (or PETSC_DETERMINE to have calculated if m is given) 3564dfb205c3SBarry Smith . N - number of global columns (or PETSC_DETERMINE to have calculated if n is given) 3565483a2f95SBarry Smith . i - row indices; that is i[0] = 0, i[row] = i[row-1] + number of block elements in that rowth block row of the matrix 3566dfb205c3SBarry Smith . j - column indices 3567dfb205c3SBarry Smith - a - matrix values 3568dfb205c3SBarry Smith 3569dfb205c3SBarry Smith Output Parameter: 3570dfb205c3SBarry Smith . mat - the matrix 3571dfb205c3SBarry Smith 3572dfb205c3SBarry Smith Level: intermediate 3573dfb205c3SBarry Smith 3574dfb205c3SBarry Smith Notes: 3575dfb205c3SBarry Smith The i, j, and a arrays ARE copied by this routine into the internal format used by PETSc; 3576dfb205c3SBarry Smith thus you CANNOT change the matrix entries by changing the values of a[] after you have 3577dfb205c3SBarry Smith called this routine. Use MatCreateMPIAIJWithSplitArrays() to avoid needing to copy the arrays. 3578dfb205c3SBarry Smith 35793adadaf3SJed Brown The order of the entries in values is the same as the block compressed sparse row storage format; that is, it is 35803adadaf3SJed Brown the same as a three dimensional array in Fortran values(bs,bs,nnz) that contains the first column of the first 35813adadaf3SJed Brown block, followed by the second column of the first block etc etc. That is, the blocks are contiguous in memory 35823adadaf3SJed Brown with column-major ordering within blocks. 35833adadaf3SJed Brown 3584dfb205c3SBarry Smith The i and j indices are 0 based, and i indices are indices corresponding to the local j array. 3585dfb205c3SBarry Smith 3586db781477SPatrick Sanan .seealso: `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`, 3587db781477SPatrick Sanan `MPIAIJ`, `MatCreateAIJ()`, `MatCreateMPIAIJWithSplitArrays()` 3588dfb205c3SBarry Smith @*/ 35897087cfbeSBarry Smith PetscErrorCode MatCreateMPIBAIJWithArrays(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,const PetscInt i[],const PetscInt j[],const PetscScalar a[],Mat *mat) 3590dfb205c3SBarry Smith { 3591dfb205c3SBarry Smith PetscFunctionBegin; 35925f80ce2aSJacob Faibussowitsch PetscCheck(!i[0],PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"i (row indices) must start with 0"); 35935f80ce2aSJacob Faibussowitsch PetscCheck(m >= 0,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"local number of rows (m) cannot be PETSC_DECIDE, or negative"); 35949566063dSJacob Faibussowitsch PetscCall(MatCreate(comm,mat)); 35959566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*mat,m,n,M,N)); 35969566063dSJacob Faibussowitsch PetscCall(MatSetType(*mat,MATMPIBAIJ)); 35979566063dSJacob Faibussowitsch PetscCall(MatSetBlockSize(*mat,bs)); 35989566063dSJacob Faibussowitsch PetscCall(MatSetUp(*mat)); 35999566063dSJacob Faibussowitsch PetscCall(MatSetOption(*mat,MAT_ROW_ORIENTED,PETSC_FALSE)); 36009566063dSJacob Faibussowitsch PetscCall(MatMPIBAIJSetPreallocationCSR(*mat,bs,i,j,a)); 36019566063dSJacob Faibussowitsch PetscCall(MatSetOption(*mat,MAT_ROW_ORIENTED,PETSC_TRUE)); 3602dfb205c3SBarry Smith PetscFunctionReturn(0); 3603dfb205c3SBarry Smith } 3604e561ad89SHong Zhang 3605bd153df0SHong Zhang PetscErrorCode MatCreateMPIMatConcatenateSeqMat_MPIBAIJ(MPI_Comm comm,Mat inmat,PetscInt n,MatReuse scall,Mat *outmat) 3606e561ad89SHong Zhang { 3607bd153df0SHong Zhang PetscInt m,N,i,rstart,nnz,Ii,bs,cbs; 3608bd153df0SHong Zhang PetscInt *indx; 3609bd153df0SHong Zhang PetscScalar *values; 3610e561ad89SHong Zhang 3611e561ad89SHong Zhang PetscFunctionBegin; 36129566063dSJacob Faibussowitsch PetscCall(MatGetSize(inmat,&m,&N)); 3613bd153df0SHong Zhang if (scall == MAT_INITIAL_MATRIX) { /* symbolic phase */ 3614bd153df0SHong Zhang Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)inmat->data; 36152c6ba4edSHong Zhang PetscInt *dnz,*onz,mbs,Nbs,nbs; 3616bd153df0SHong Zhang PetscInt *bindx,rmax=a->rmax,j; 361777f764caSHong Zhang PetscMPIInt rank,size; 3618e561ad89SHong Zhang 36199566063dSJacob Faibussowitsch PetscCall(MatGetBlockSizes(inmat,&bs,&cbs)); 3620bd153df0SHong Zhang mbs = m/bs; Nbs = N/cbs; 3621bd153df0SHong Zhang if (n == PETSC_DECIDE) { 36229566063dSJacob Faibussowitsch PetscCall(PetscSplitOwnershipBlock(comm,cbs,&n,&N)); 3623bd153df0SHong Zhang } 3624da91a574SPierre Jolivet nbs = n/cbs; 3625e561ad89SHong Zhang 36269566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(rmax,&bindx)); 3627d0609cedSBarry Smith MatPreallocateBegin(comm,mbs,nbs,dnz,onz); /* inline function, output __end and __rstart are used below */ 362877f764caSHong Zhang 36299566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm,&rank)); 36309566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm,&size)); 363177f764caSHong Zhang if (rank == size-1) { 363277f764caSHong Zhang /* Check sum(nbs) = Nbs */ 36335f80ce2aSJacob Faibussowitsch PetscCheck(__end == Nbs,PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"Sum of local block columns %" PetscInt_FMT " != global block columns %" PetscInt_FMT,__end,Nbs); 363477f764caSHong Zhang } 363577f764caSHong Zhang 3636d0609cedSBarry Smith rstart = __rstart; /* block rstart of *outmat; see inline function MatPreallocateBegin */ 3637bd153df0SHong Zhang for (i=0; i<mbs; i++) { 36389566063dSJacob Faibussowitsch PetscCall(MatGetRow_SeqBAIJ(inmat,i*bs,&nnz,&indx,NULL)); /* non-blocked nnz and indx */ 3639647a6520SHong Zhang nnz = nnz/bs; 3640647a6520SHong Zhang for (j=0; j<nnz; j++) bindx[j] = indx[j*bs]/bs; 36419566063dSJacob Faibussowitsch PetscCall(MatPreallocateSet(i+rstart,nnz,bindx,dnz,onz)); 36429566063dSJacob Faibussowitsch PetscCall(MatRestoreRow_SeqBAIJ(inmat,i*bs,&nnz,&indx,NULL)); 3643e561ad89SHong Zhang } 36449566063dSJacob Faibussowitsch PetscCall(PetscFree(bindx)); 3645e561ad89SHong Zhang 36469566063dSJacob Faibussowitsch PetscCall(MatCreate(comm,outmat)); 36479566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*outmat,m,n,PETSC_DETERMINE,PETSC_DETERMINE)); 36489566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizes(*outmat,bs,cbs)); 36499566063dSJacob Faibussowitsch PetscCall(MatSetType(*outmat,MATBAIJ)); 36509566063dSJacob Faibussowitsch PetscCall(MatSeqBAIJSetPreallocation(*outmat,bs,0,dnz)); 36519566063dSJacob Faibussowitsch PetscCall(MatMPIBAIJSetPreallocation(*outmat,bs,0,dnz,0,onz)); 3652d0609cedSBarry Smith MatPreallocateEnd(dnz,onz); 36539566063dSJacob Faibussowitsch PetscCall(MatSetOption(*outmat,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE)); 3654e561ad89SHong Zhang } 3655e561ad89SHong Zhang 3656bd153df0SHong Zhang /* numeric phase */ 36579566063dSJacob Faibussowitsch PetscCall(MatGetBlockSizes(inmat,&bs,&cbs)); 36589566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(*outmat,&rstart,NULL)); 3659e561ad89SHong Zhang 3660e561ad89SHong Zhang for (i=0; i<m; i++) { 36619566063dSJacob Faibussowitsch PetscCall(MatGetRow_SeqBAIJ(inmat,i,&nnz,&indx,&values)); 3662e561ad89SHong Zhang Ii = i + rstart; 36639566063dSJacob Faibussowitsch PetscCall(MatSetValues(*outmat,1,&Ii,nnz,indx,values,INSERT_VALUES)); 36649566063dSJacob Faibussowitsch PetscCall(MatRestoreRow_SeqBAIJ(inmat,i,&nnz,&indx,&values)); 3665e561ad89SHong Zhang } 36669566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(*outmat,MAT_FINAL_ASSEMBLY)); 36679566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(*outmat,MAT_FINAL_ASSEMBLY)); 3668e561ad89SHong Zhang PetscFunctionReturn(0); 3669e561ad89SHong Zhang } 3670