xref: /petsc/src/mat/impls/baij/mpi/mpibaij.c (revision badd099fb2ece77d080fc02aefe95d4a02e75697)
1c6db04a5SJed Brown #include <../src/mat/impls/baij/mpi/mpibaij.h> /*I  "petscmat.h"  I*/
2c5d9258eSSatish Balay 
3b51a4376SLisandro Dalcin #include <petsc/private/hashseti.h>
4c6db04a5SJed Brown #include <petscblaslapack.h>
565a92638SMatthew G. Knepley #include <petscsf.h>
679bdfe76SSatish Balay 
766976f2fSJacob Faibussowitsch static PetscErrorCode MatDestroy_MPIBAIJ(Mat mat)
826cec326SBarry Smith {
926cec326SBarry Smith   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data;
1026cec326SBarry Smith 
1126cec326SBarry Smith   PetscFunctionBegin;
1226cec326SBarry Smith   PetscCall(PetscLogObjectState((PetscObject)mat, "Rows=%" PetscInt_FMT ",Cols=%" PetscInt_FMT, mat->rmap->N, mat->cmap->N));
1326cec326SBarry Smith   PetscCall(MatStashDestroy_Private(&mat->stash));
1426cec326SBarry Smith   PetscCall(MatStashDestroy_Private(&mat->bstash));
1526cec326SBarry Smith   PetscCall(MatDestroy(&baij->A));
1626cec326SBarry Smith   PetscCall(MatDestroy(&baij->B));
1726cec326SBarry Smith #if defined(PETSC_USE_CTABLE)
1826cec326SBarry Smith   PetscCall(PetscHMapIDestroy(&baij->colmap));
1926cec326SBarry Smith #else
2026cec326SBarry Smith   PetscCall(PetscFree(baij->colmap));
2126cec326SBarry Smith #endif
2226cec326SBarry Smith   PetscCall(PetscFree(baij->garray));
2326cec326SBarry Smith   PetscCall(VecDestroy(&baij->lvec));
2426cec326SBarry Smith   PetscCall(VecScatterDestroy(&baij->Mvctx));
2526cec326SBarry Smith   PetscCall(PetscFree2(baij->rowvalues, baij->rowindices));
2626cec326SBarry Smith   PetscCall(PetscFree(baij->barray));
2726cec326SBarry Smith   PetscCall(PetscFree2(baij->hd, baij->ht));
2826cec326SBarry Smith   PetscCall(PetscFree(baij->rangebs));
2926cec326SBarry Smith   PetscCall(PetscFree(mat->data));
3026cec326SBarry Smith 
3126cec326SBarry Smith   PetscCall(PetscObjectChangeTypeName((PetscObject)mat, NULL));
3226cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatStoreValues_C", NULL));
3326cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatRetrieveValues_C", NULL));
3426cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMPIBAIJSetPreallocation_C", NULL));
3526cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMPIBAIJSetPreallocationCSR_C", NULL));
3626cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDiagonalScaleLocal_C", NULL));
3726cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatSetHashTableFactor_C", NULL));
3826cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpibaij_mpisbaij_C", NULL));
3926cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpibaij_mpiadj_C", NULL));
4026cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpibaij_mpiaij_C", NULL));
4126cec326SBarry Smith #if defined(PETSC_HAVE_HYPRE)
4226cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpibaij_hypre_C", NULL));
4326cec326SBarry Smith #endif
4426cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpibaij_is_C", NULL));
4526cec326SBarry Smith   PetscFunctionReturn(PETSC_SUCCESS);
4626cec326SBarry Smith }
4726cec326SBarry Smith 
4826cec326SBarry Smith /* defines MatSetValues_MPI_Hash(), MatAssemblyBegin_MPI_Hash(), and  MatAssemblyEnd_MPI_Hash() */
4926cec326SBarry Smith #define TYPE BAIJ
5026cec326SBarry Smith #include "../src/mat/impls/aij/mpi/mpihashmat.h"
5126cec326SBarry Smith #undef TYPE
5226cec326SBarry Smith 
537ea3e4caSstefano_zampini #if defined(PETSC_HAVE_HYPRE)
547ea3e4caSstefano_zampini PETSC_INTERN PetscErrorCode MatConvert_AIJ_HYPRE(Mat, MatType, MatReuse, Mat *);
557ea3e4caSstefano_zampini #endif
567ea3e4caSstefano_zampini 
5766976f2fSJacob Faibussowitsch static PetscErrorCode MatGetRowMaxAbs_MPIBAIJ(Mat A, Vec v, PetscInt idx[])
58d71ae5a4SJacob Faibussowitsch {
597843d17aSBarry Smith   Mat_MPIBAIJ       *a = (Mat_MPIBAIJ *)A->data;
604e879edeSHong Zhang   PetscInt           i, *idxb = NULL, m = A->rmap->n, bs = A->cmap->bs;
61db161fc6SPierre Jolivet   PetscScalar       *vv;
624e879edeSHong Zhang   Vec                vB, vA;
63db161fc6SPierre Jolivet   const PetscScalar *va, *vb;
647843d17aSBarry Smith 
657843d17aSBarry Smith   PetscFunctionBegin;
66c7b600bfSPierre Jolivet   PetscCall(MatCreateVecs(a->A, NULL, &vA));
679566063dSJacob Faibussowitsch   PetscCall(MatGetRowMaxAbs(a->A, vA, idx));
684e879edeSHong Zhang 
69db161fc6SPierre Jolivet   PetscCall(VecGetArrayRead(vA, &va));
70985db425SBarry Smith   if (idx) {
714e879edeSHong Zhang     for (i = 0; i < m; i++) {
7226fbe8dcSKarl Rupp       if (PetscAbsScalar(va[i])) idx[i] += A->cmap->rstart;
7326fbe8dcSKarl Rupp     }
74985db425SBarry Smith   }
757843d17aSBarry Smith 
76c7b600bfSPierre Jolivet   PetscCall(MatCreateVecs(a->B, NULL, &vB));
779566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(m, &idxb));
789566063dSJacob Faibussowitsch   PetscCall(MatGetRowMaxAbs(a->B, vB, idxb));
797843d17aSBarry Smith 
809566063dSJacob Faibussowitsch   PetscCall(VecGetArrayWrite(v, &vv));
819566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(vB, &vb));
824e879edeSHong Zhang   for (i = 0; i < m; i++) {
8326fbe8dcSKarl Rupp     if (PetscAbsScalar(va[i]) < PetscAbsScalar(vb[i])) {
844e879edeSHong Zhang       vv[i] = vb[i];
854e879edeSHong Zhang       if (idx) idx[i] = bs * a->garray[idxb[i] / bs] + (idxb[i] % bs);
864e879edeSHong Zhang     } else {
874e879edeSHong Zhang       vv[i] = va[i];
889371c9d4SSatish Balay       if (idx && PetscAbsScalar(va[i]) == PetscAbsScalar(vb[i]) && idxb[i] != -1 && idx[i] > bs * a->garray[idxb[i] / bs] + (idxb[i] % bs)) idx[i] = bs * a->garray[idxb[i] / bs] + (idxb[i] % bs);
8926fbe8dcSKarl Rupp     }
907843d17aSBarry Smith   }
91db161fc6SPierre Jolivet   PetscCall(VecRestoreArrayWrite(v, &vv));
92db161fc6SPierre Jolivet   PetscCall(VecRestoreArrayRead(vA, &va));
939566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(vB, &vb));
949566063dSJacob Faibussowitsch   PetscCall(PetscFree(idxb));
959566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&vA));
969566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&vB));
973ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
987843d17aSBarry Smith }
997843d17aSBarry Smith 
100c7b600bfSPierre Jolivet static PetscErrorCode MatGetRowSumAbs_MPIBAIJ(Mat A, Vec v)
101c7b600bfSPierre Jolivet {
102c7b600bfSPierre Jolivet   Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data;
103c7b600bfSPierre Jolivet   Vec          vB, vA;
104c7b600bfSPierre Jolivet 
105c7b600bfSPierre Jolivet   PetscFunctionBegin;
106c7b600bfSPierre Jolivet   PetscCall(MatCreateVecs(a->A, NULL, &vA));
107c7b600bfSPierre Jolivet   PetscCall(MatGetRowSumAbs(a->A, vA));
108c7b600bfSPierre Jolivet   PetscCall(MatCreateVecs(a->B, NULL, &vB));
109c7b600bfSPierre Jolivet   PetscCall(MatGetRowSumAbs(a->B, vB));
110c7b600bfSPierre Jolivet   PetscCall(VecAXPY(vA, 1.0, vB));
111c7b600bfSPierre Jolivet   PetscCall(VecDestroy(&vB));
112c7b600bfSPierre Jolivet   PetscCall(VecCopy(vA, v));
113c7b600bfSPierre Jolivet   PetscCall(VecDestroy(&vA));
114c7b600bfSPierre Jolivet   PetscFunctionReturn(PETSC_SUCCESS);
115c7b600bfSPierre Jolivet }
116c7b600bfSPierre Jolivet 
11766976f2fSJacob Faibussowitsch static PetscErrorCode MatStoreValues_MPIBAIJ(Mat mat)
118d71ae5a4SJacob Faibussowitsch {
1197fc3c18eSBarry Smith   Mat_MPIBAIJ *aij = (Mat_MPIBAIJ *)mat->data;
1207fc3c18eSBarry Smith 
1217fc3c18eSBarry Smith   PetscFunctionBegin;
1229566063dSJacob Faibussowitsch   PetscCall(MatStoreValues(aij->A));
1239566063dSJacob Faibussowitsch   PetscCall(MatStoreValues(aij->B));
1243ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1257fc3c18eSBarry Smith }
1267fc3c18eSBarry Smith 
12766976f2fSJacob Faibussowitsch static PetscErrorCode MatRetrieveValues_MPIBAIJ(Mat mat)
128d71ae5a4SJacob Faibussowitsch {
1297fc3c18eSBarry Smith   Mat_MPIBAIJ *aij = (Mat_MPIBAIJ *)mat->data;
1307fc3c18eSBarry Smith 
1317fc3c18eSBarry Smith   PetscFunctionBegin;
1329566063dSJacob Faibussowitsch   PetscCall(MatRetrieveValues(aij->A));
1339566063dSJacob Faibussowitsch   PetscCall(MatRetrieveValues(aij->B));
1343ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1357fc3c18eSBarry Smith }
1367fc3c18eSBarry Smith 
137537820f0SBarry Smith /*
138537820f0SBarry Smith      Local utility routine that creates a mapping from the global column
13957b952d6SSatish Balay    number to the local number in the off-diagonal part of the local
140e06f6af7SJed Brown    storage of the matrix.  This is done in a non scalable way since the
14157b952d6SSatish Balay    length of colmap equals the global matrix length.
14257b952d6SSatish Balay */
143d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateColmap_MPIBAIJ_Private(Mat mat)
144d71ae5a4SJacob Faibussowitsch {
14557b952d6SSatish Balay   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data;
14657b952d6SSatish Balay   Mat_SeqBAIJ *B    = (Mat_SeqBAIJ *)baij->B->data;
147d0f46423SBarry Smith   PetscInt     nbs = B->nbs, i, bs = mat->rmap->bs;
14857b952d6SSatish Balay 
149d64ed03dSBarry Smith   PetscFunctionBegin;
150aa482453SBarry Smith #if defined(PETSC_USE_CTABLE)
151eec179cfSJacob Faibussowitsch   PetscCall(PetscHMapICreateWithSize(baij->nbs, &baij->colmap));
152c76ffc5fSJacob Faibussowitsch   for (i = 0; i < nbs; i++) PetscCall(PetscHMapISet(baij->colmap, baij->garray[i] + 1, i * bs + 1));
15348e59246SSatish Balay #else
1549566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(baij->Nbs + 1, &baij->colmap));
155928fc39bSSatish Balay   for (i = 0; i < nbs; i++) baij->colmap[baij->garray[i]] = i * bs + 1;
15648e59246SSatish Balay #endif
1573ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
15857b952d6SSatish Balay }
15957b952d6SSatish Balay 
160d40312a9SBarry Smith #define MatSetValues_SeqBAIJ_A_Private(row, col, value, addv, orow, ocol) \
161a8f51744SPierre Jolivet   do { \
16280c1aa95SSatish Balay     brow = row / bs; \
1638e3a54c0SPierre Jolivet     rp   = PetscSafePointerPlusOffset(aj, ai[brow]); \
1648e3a54c0SPierre Jolivet     ap   = PetscSafePointerPlusOffset(aa, bs2 * ai[brow]); \
1659371c9d4SSatish Balay     rmax = aimax[brow]; \
1669371c9d4SSatish Balay     nrow = ailen[brow]; \
16780c1aa95SSatish Balay     bcol = col / bs; \
1689371c9d4SSatish Balay     ridx = row % bs; \
1699371c9d4SSatish Balay     cidx = col % bs; \
1709371c9d4SSatish Balay     low  = 0; \
1719371c9d4SSatish Balay     high = nrow; \
172ab26458aSBarry Smith     while (high - low > 3) { \
173ab26458aSBarry Smith       t = (low + high) / 2; \
174ab26458aSBarry Smith       if (rp[t] > bcol) high = t; \
175ab26458aSBarry Smith       else low = t; \
176ab26458aSBarry Smith     } \
177ab26458aSBarry Smith     for (_i = low; _i < high; _i++) { \
17880c1aa95SSatish Balay       if (rp[_i] > bcol) break; \
17980c1aa95SSatish Balay       if (rp[_i] == bcol) { \
18080c1aa95SSatish Balay         bap = ap + bs2 * _i + bs * cidx + ridx; \
181eada6651SSatish Balay         if (addv == ADD_VALUES) *bap += value; \
182eada6651SSatish Balay         else *bap = value; \
183ac7a638eSSatish Balay         goto a_noinsert; \
18480c1aa95SSatish Balay       } \
18580c1aa95SSatish Balay     } \
18689280ab3SLois Curfman McInnes     if (a->nonew == 1) goto a_noinsert; \
1875f80ce2aSJacob Faibussowitsch     PetscCheck(a->nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", orow, ocol); \
188fef13f97SBarry Smith     MatSeqXAIJReallocateAIJ(A, a->mbs, bs2, nrow, brow, bcol, rmax, aa, ai, aj, rp, ap, aimax, a->nonew, MatScalar); \
18980c1aa95SSatish Balay     N = nrow++ - 1; \
19080c1aa95SSatish Balay     /* shift up all the later entries in this row */ \
1919566063dSJacob Faibussowitsch     PetscCall(PetscArraymove(rp + _i + 1, rp + _i, N - _i + 1)); \
1929566063dSJacob Faibussowitsch     PetscCall(PetscArraymove(ap + bs2 * (_i + 1), ap + bs2 * _i, bs2 * (N - _i + 1))); \
1939566063dSJacob Faibussowitsch     PetscCall(PetscArrayzero(ap + bs2 * _i, bs2)); \
19480c1aa95SSatish Balay     rp[_i]                          = bcol; \
19580c1aa95SSatish Balay     ap[bs2 * _i + bs * cidx + ridx] = value; \
196ac7a638eSSatish Balay   a_noinsert:; \
19780c1aa95SSatish Balay     ailen[brow] = nrow; \
198a8f51744SPierre Jolivet   } while (0)
19957b952d6SSatish Balay 
200d40312a9SBarry Smith #define MatSetValues_SeqBAIJ_B_Private(row, col, value, addv, orow, ocol) \
201a8f51744SPierre Jolivet   do { \
202ac7a638eSSatish Balay     brow = row / bs; \
2038e3a54c0SPierre Jolivet     rp   = PetscSafePointerPlusOffset(bj, bi[brow]); \
2048e3a54c0SPierre Jolivet     ap   = PetscSafePointerPlusOffset(ba, bs2 * bi[brow]); \
2059371c9d4SSatish Balay     rmax = bimax[brow]; \
2069371c9d4SSatish Balay     nrow = bilen[brow]; \
207ac7a638eSSatish Balay     bcol = col / bs; \
2089371c9d4SSatish Balay     ridx = row % bs; \
2099371c9d4SSatish Balay     cidx = col % bs; \
2109371c9d4SSatish Balay     low  = 0; \
2119371c9d4SSatish Balay     high = nrow; \
212ac7a638eSSatish Balay     while (high - low > 3) { \
213ac7a638eSSatish Balay       t = (low + high) / 2; \
214ac7a638eSSatish Balay       if (rp[t] > bcol) high = t; \
215ac7a638eSSatish Balay       else low = t; \
216ac7a638eSSatish Balay     } \
217ac7a638eSSatish Balay     for (_i = low; _i < high; _i++) { \
218ac7a638eSSatish Balay       if (rp[_i] > bcol) break; \
219ac7a638eSSatish Balay       if (rp[_i] == bcol) { \
220ac7a638eSSatish Balay         bap = ap + bs2 * _i + bs * cidx + ridx; \
221ac7a638eSSatish Balay         if (addv == ADD_VALUES) *bap += value; \
222ac7a638eSSatish Balay         else *bap = value; \
223ac7a638eSSatish Balay         goto b_noinsert; \
224ac7a638eSSatish Balay       } \
225ac7a638eSSatish Balay     } \
22689280ab3SLois Curfman McInnes     if (b->nonew == 1) goto b_noinsert; \
2275f80ce2aSJacob Faibussowitsch     PetscCheck(b->nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero at global row/column  (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", orow, ocol); \
228fef13f97SBarry Smith     MatSeqXAIJReallocateAIJ(B, b->mbs, bs2, nrow, brow, bcol, rmax, ba, bi, bj, rp, ap, bimax, b->nonew, MatScalar); \
229ac7a638eSSatish Balay     N = nrow++ - 1; \
230ac7a638eSSatish Balay     /* shift up all the later entries in this row */ \
2319566063dSJacob Faibussowitsch     PetscCall(PetscArraymove(rp + _i + 1, rp + _i, N - _i + 1)); \
2329566063dSJacob Faibussowitsch     PetscCall(PetscArraymove(ap + bs2 * (_i + 1), ap + bs2 * _i, bs2 * (N - _i + 1))); \
2339566063dSJacob Faibussowitsch     PetscCall(PetscArrayzero(ap + bs2 * _i, bs2)); \
234ac7a638eSSatish Balay     rp[_i]                          = bcol; \
235ac7a638eSSatish Balay     ap[bs2 * _i + bs * cidx + ridx] = value; \
236ac7a638eSSatish Balay   b_noinsert:; \
237ac7a638eSSatish Balay     bilen[brow] = nrow; \
238a8f51744SPierre Jolivet   } while (0)
239ac7a638eSSatish Balay 
240d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetValues_MPIBAIJ(Mat mat, PetscInt m, const PetscInt im[], PetscInt n, const PetscInt in[], const PetscScalar v[], InsertMode addv)
241d71ae5a4SJacob Faibussowitsch {
24257b952d6SSatish Balay   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data;
24393fea6afSBarry Smith   MatScalar    value;
244ace3abfcSBarry Smith   PetscBool    roworiented = baij->roworiented;
245b24ad042SBarry Smith   PetscInt     i, j, row, col;
246d0f46423SBarry Smith   PetscInt     rstart_orig = mat->rmap->rstart;
247d0f46423SBarry Smith   PetscInt     rend_orig = mat->rmap->rend, cstart_orig = mat->cmap->rstart;
248d0f46423SBarry Smith   PetscInt     cend_orig = mat->cmap->rend, bs = mat->rmap->bs;
24957b952d6SSatish Balay 
250eada6651SSatish Balay   /* Some Variables required in the macro */
25180c1aa95SSatish Balay   Mat          A     = baij->A;
25257508eceSPierre Jolivet   Mat_SeqBAIJ *a     = (Mat_SeqBAIJ *)A->data;
253b24ad042SBarry Smith   PetscInt    *aimax = a->imax, *ai = a->i, *ailen = a->ilen, *aj = a->j;
2543eda8832SBarry Smith   MatScalar   *aa = a->a;
255ac7a638eSSatish Balay 
256ac7a638eSSatish Balay   Mat          B     = baij->B;
25757508eceSPierre Jolivet   Mat_SeqBAIJ *b     = (Mat_SeqBAIJ *)B->data;
258b24ad042SBarry Smith   PetscInt    *bimax = b->imax, *bi = b->i, *bilen = b->ilen, *bj = b->j;
2593eda8832SBarry Smith   MatScalar   *ba = b->a;
260ac7a638eSSatish Balay 
261b24ad042SBarry Smith   PetscInt  *rp, ii, nrow, _i, rmax, N, brow, bcol;
262b24ad042SBarry Smith   PetscInt   low, high, t, ridx, cidx, bs2 = a->bs2;
2633eda8832SBarry Smith   MatScalar *ap, *bap;
26480c1aa95SSatish Balay 
265d64ed03dSBarry Smith   PetscFunctionBegin;
26657b952d6SSatish Balay   for (i = 0; i < m; i++) {
2675ef9f2a5SBarry Smith     if (im[i] < 0) continue;
2685f80ce2aSJacob Faibussowitsch     PetscCheck(im[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, im[i], mat->rmap->N - 1);
26957b952d6SSatish Balay     if (im[i] >= rstart_orig && im[i] < rend_orig) {
27057b952d6SSatish Balay       row = im[i] - rstart_orig;
27157b952d6SSatish Balay       for (j = 0; j < n; j++) {
27257b952d6SSatish Balay         if (in[j] >= cstart_orig && in[j] < cend_orig) {
27357b952d6SSatish Balay           col = in[j] - cstart_orig;
274db4deed7SKarl Rupp           if (roworiented) value = v[i * n + j];
275db4deed7SKarl Rupp           else value = v[i + j * m];
276d40312a9SBarry Smith           MatSetValues_SeqBAIJ_A_Private(row, col, value, addv, im[i], in[j]);
277f7d195e4SLawrence Mitchell         } else if (in[j] < 0) {
278f7d195e4SLawrence Mitchell           continue;
279f7d195e4SLawrence Mitchell         } else {
280f7d195e4SLawrence Mitchell           PetscCheck(in[j] < mat->cmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, in[j], mat->cmap->N - 1);
28157b952d6SSatish Balay           if (mat->was_assembled) {
28248a46eb9SPierre Jolivet             if (!baij->colmap) PetscCall(MatCreateColmap_MPIBAIJ_Private(mat));
283aa482453SBarry Smith #if defined(PETSC_USE_CTABLE)
284eec179cfSJacob Faibussowitsch             PetscCall(PetscHMapIGetWithDefault(baij->colmap, in[j] / bs + 1, 0, &col));
285bba1ac68SSatish Balay             col = col - 1;
28648e59246SSatish Balay #else
287bba1ac68SSatish Balay             col = baij->colmap[in[j] / bs] - 1;
28848e59246SSatish Balay #endif
289f4f49eeaSPierre Jolivet             if (col < 0 && !((Mat_SeqBAIJ *)baij->B->data)->nonew) {
2909566063dSJacob Faibussowitsch               PetscCall(MatDisAssemble_MPIBAIJ(mat));
2918295de27SSatish Balay               col = in[j];
2929bf004c3SSatish Balay               /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */
2939bf004c3SSatish Balay               B     = baij->B;
29457508eceSPierre Jolivet               b     = (Mat_SeqBAIJ *)B->data;
2959371c9d4SSatish Balay               bimax = b->imax;
2969371c9d4SSatish Balay               bi    = b->i;
2979371c9d4SSatish Balay               bilen = b->ilen;
2989371c9d4SSatish Balay               bj    = b->j;
2999bf004c3SSatish Balay               ba    = b->a;
300f7d195e4SLawrence Mitchell             } else {
301f7d195e4SLawrence Mitchell               PetscCheck(col >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", im[i], in[j]);
302f7d195e4SLawrence Mitchell               col += in[j] % bs;
303f7d195e4SLawrence Mitchell             }
3048295de27SSatish Balay           } else col = in[j];
305db4deed7SKarl Rupp           if (roworiented) value = v[i * n + j];
306db4deed7SKarl Rupp           else value = v[i + j * m];
307d40312a9SBarry Smith           MatSetValues_SeqBAIJ_B_Private(row, col, value, addv, im[i], in[j]);
3089566063dSJacob Faibussowitsch           /* PetscCall(MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv)); */
30957b952d6SSatish Balay         }
31057b952d6SSatish Balay       }
311d64ed03dSBarry Smith     } else {
3125f80ce2aSJacob Faibussowitsch       PetscCheck(!mat->nooffprocentries, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Setting off process row %" PetscInt_FMT " even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set", im[i]);
31390f02eecSBarry Smith       if (!baij->donotstash) {
3145080c13bSMatthew G Knepley         mat->assembled = PETSC_FALSE;
315ff2fd236SBarry Smith         if (roworiented) {
3169566063dSJacob Faibussowitsch           PetscCall(MatStashValuesRow_Private(&mat->stash, im[i], n, in, v + i * n, PETSC_FALSE));
317ff2fd236SBarry Smith         } else {
3189566063dSJacob Faibussowitsch           PetscCall(MatStashValuesCol_Private(&mat->stash, im[i], n, in, v + i, m, PETSC_FALSE));
31957b952d6SSatish Balay         }
32057b952d6SSatish Balay       }
32157b952d6SSatish Balay     }
32290f02eecSBarry Smith   }
3233ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
32457b952d6SSatish Balay }
32557b952d6SSatish Balay 
326d71ae5a4SJacob Faibussowitsch static inline PetscErrorCode MatSetValuesBlocked_SeqBAIJ_Inlined(Mat A, PetscInt row, PetscInt col, const PetscScalar v[], InsertMode is, PetscInt orow, PetscInt ocol)
327d71ae5a4SJacob Faibussowitsch {
328880c6e6aSBarry Smith   Mat_SeqBAIJ       *a = (Mat_SeqBAIJ *)A->data;
3298ab52850SBarry Smith   PetscInt          *rp, low, high, t, ii, jj, nrow, i, rmax, N;
330880c6e6aSBarry Smith   PetscInt          *imax = a->imax, *ai = a->i, *ailen = a->ilen;
3318ab52850SBarry Smith   PetscInt          *aj = a->j, nonew = a->nonew, bs2 = a->bs2, bs = A->rmap->bs;
332880c6e6aSBarry Smith   PetscBool          roworiented = a->roworiented;
333880c6e6aSBarry Smith   const PetscScalar *value       = v;
334880c6e6aSBarry Smith   MatScalar         *ap, *aa = a->a, *bap;
335880c6e6aSBarry Smith 
336880c6e6aSBarry Smith   PetscFunctionBegin;
337880c6e6aSBarry Smith   rp    = aj + ai[row];
338880c6e6aSBarry Smith   ap    = aa + bs2 * ai[row];
339880c6e6aSBarry Smith   rmax  = imax[row];
340880c6e6aSBarry Smith   nrow  = ailen[row];
3418ab52850SBarry Smith   value = v;
3428ab52850SBarry Smith   low   = 0;
3438ab52850SBarry Smith   high  = nrow;
344880c6e6aSBarry Smith   while (high - low > 7) {
345880c6e6aSBarry Smith     t = (low + high) / 2;
346880c6e6aSBarry Smith     if (rp[t] > col) high = t;
347880c6e6aSBarry Smith     else low = t;
348880c6e6aSBarry Smith   }
349880c6e6aSBarry Smith   for (i = low; i < high; i++) {
350880c6e6aSBarry Smith     if (rp[i] > col) break;
351880c6e6aSBarry Smith     if (rp[i] == col) {
352880c6e6aSBarry Smith       bap = ap + bs2 * i;
353880c6e6aSBarry Smith       if (roworiented) {
354880c6e6aSBarry Smith         if (is == ADD_VALUES) {
3558ab52850SBarry Smith           for (ii = 0; ii < bs; ii++) {
356ad540459SPierre Jolivet             for (jj = ii; jj < bs2; jj += bs) bap[jj] += *value++;
357880c6e6aSBarry Smith           }
358880c6e6aSBarry Smith         } else {
3598ab52850SBarry Smith           for (ii = 0; ii < bs; ii++) {
360ad540459SPierre Jolivet             for (jj = ii; jj < bs2; jj += bs) bap[jj] = *value++;
361880c6e6aSBarry Smith           }
362880c6e6aSBarry Smith         }
363880c6e6aSBarry Smith       } else {
364880c6e6aSBarry Smith         if (is == ADD_VALUES) {
3658ab52850SBarry Smith           for (ii = 0; ii < bs; ii++, value += bs) {
366ad540459SPierre Jolivet             for (jj = 0; jj < bs; jj++) bap[jj] += value[jj];
367880c6e6aSBarry Smith             bap += bs;
368880c6e6aSBarry Smith           }
369880c6e6aSBarry Smith         } else {
3708ab52850SBarry Smith           for (ii = 0; ii < bs; ii++, value += bs) {
371ad540459SPierre Jolivet             for (jj = 0; jj < bs; jj++) bap[jj] = value[jj];
372880c6e6aSBarry Smith             bap += bs;
373880c6e6aSBarry Smith           }
374880c6e6aSBarry Smith         }
375880c6e6aSBarry Smith       }
376880c6e6aSBarry Smith       goto noinsert2;
377880c6e6aSBarry Smith     }
378880c6e6aSBarry Smith   }
379880c6e6aSBarry Smith   if (nonew == 1) goto noinsert2;
3805f80ce2aSJacob Faibussowitsch   PetscCheck(nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new global block indexed nonzero block (%" PetscInt_FMT ", %" PetscInt_FMT ") in the matrix", orow, ocol);
381880c6e6aSBarry Smith   MatSeqXAIJReallocateAIJ(A, a->mbs, bs2, nrow, row, col, rmax, aa, ai, aj, rp, ap, imax, nonew, MatScalar);
3829371c9d4SSatish Balay   N = nrow++ - 1;
3839371c9d4SSatish Balay   high++;
384880c6e6aSBarry Smith   /* shift up all the later entries in this row */
3859566063dSJacob Faibussowitsch   PetscCall(PetscArraymove(rp + i + 1, rp + i, N - i + 1));
3869566063dSJacob Faibussowitsch   PetscCall(PetscArraymove(ap + bs2 * (i + 1), ap + bs2 * i, bs2 * (N - i + 1)));
387880c6e6aSBarry Smith   rp[i] = col;
388880c6e6aSBarry Smith   bap   = ap + bs2 * i;
389880c6e6aSBarry Smith   if (roworiented) {
3908ab52850SBarry Smith     for (ii = 0; ii < bs; ii++) {
391ad540459SPierre Jolivet       for (jj = ii; jj < bs2; jj += bs) bap[jj] = *value++;
392880c6e6aSBarry Smith     }
393880c6e6aSBarry Smith   } else {
3948ab52850SBarry Smith     for (ii = 0; ii < bs; ii++) {
395ad540459SPierre Jolivet       for (jj = 0; jj < bs; jj++) *bap++ = *value++;
396880c6e6aSBarry Smith     }
397880c6e6aSBarry Smith   }
398880c6e6aSBarry Smith noinsert2:;
399880c6e6aSBarry Smith   ailen[row] = nrow;
4003ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
401880c6e6aSBarry Smith }
402880c6e6aSBarry Smith 
4038ab52850SBarry Smith /*
4048ab52850SBarry Smith     This routine should be optimized so that the block copy at ** Here a copy is required ** below is not needed
4058ab52850SBarry Smith     by passing additional stride information into the MatSetValuesBlocked_SeqBAIJ_Inlined() routine
4068ab52850SBarry Smith */
40766976f2fSJacob Faibussowitsch static PetscErrorCode MatSetValuesBlocked_MPIBAIJ(Mat mat, PetscInt m, const PetscInt im[], PetscInt n, const PetscInt in[], const PetscScalar v[], InsertMode addv)
408d71ae5a4SJacob Faibussowitsch {
409ab26458aSBarry Smith   Mat_MPIBAIJ       *baij = (Mat_MPIBAIJ *)mat->data;
410dd6ea824SBarry Smith   const PetscScalar *value;
411f15d580aSBarry Smith   MatScalar         *barray      = baij->barray;
412ace3abfcSBarry Smith   PetscBool          roworiented = baij->roworiented;
413899cda47SBarry Smith   PetscInt           i, j, ii, jj, row, col, rstart = baij->rstartbs;
414899cda47SBarry Smith   PetscInt           rend = baij->rendbs, cstart = baij->cstartbs, stepval;
415d0f46423SBarry Smith   PetscInt           cend = baij->cendbs, bs = mat->rmap->bs, bs2 = baij->bs2;
416ab26458aSBarry Smith 
417b16ae2b1SBarry Smith   PetscFunctionBegin;
41830793edcSSatish Balay   if (!barray) {
4199566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(bs2, &barray));
42082502324SSatish Balay     baij->barray = barray;
42130793edcSSatish Balay   }
42230793edcSSatish Balay 
42326fbe8dcSKarl Rupp   if (roworiented) stepval = (n - 1) * bs;
42426fbe8dcSKarl Rupp   else stepval = (m - 1) * bs;
42526fbe8dcSKarl Rupp 
426ab26458aSBarry Smith   for (i = 0; i < m; i++) {
4275ef9f2a5SBarry Smith     if (im[i] < 0) continue;
4286bdcaf15SBarry Smith     PetscCheck(im[i] < baij->Mbs, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Block indexed row too large %" PetscInt_FMT " max %" PetscInt_FMT, im[i], baij->Mbs - 1);
429ab26458aSBarry Smith     if (im[i] >= rstart && im[i] < rend) {
430ab26458aSBarry Smith       row = im[i] - rstart;
431ab26458aSBarry Smith       for (j = 0; j < n; j++) {
43215b57d14SSatish Balay         /* If NumCol = 1 then a copy is not required */
43315b57d14SSatish Balay         if ((roworiented) && (n == 1)) {
434f15d580aSBarry Smith           barray = (MatScalar *)v + i * bs2;
43515b57d14SSatish Balay         } else if ((!roworiented) && (m == 1)) {
436f15d580aSBarry Smith           barray = (MatScalar *)v + j * bs2;
43715b57d14SSatish Balay         } else { /* Here a copy is required */
438ab26458aSBarry Smith           if (roworiented) {
43953ef36baSBarry Smith             value = v + (i * (stepval + bs) + j) * bs;
440ab26458aSBarry Smith           } else {
44153ef36baSBarry Smith             value = v + (j * (stepval + bs) + i) * bs;
442abef11f7SSatish Balay           }
44353ef36baSBarry Smith           for (ii = 0; ii < bs; ii++, value += bs + stepval) {
44426fbe8dcSKarl Rupp             for (jj = 0; jj < bs; jj++) barray[jj] = value[jj];
44553ef36baSBarry Smith             barray += bs;
44647513183SBarry Smith           }
44730793edcSSatish Balay           barray -= bs2;
44815b57d14SSatish Balay         }
449abef11f7SSatish Balay 
450abef11f7SSatish Balay         if (in[j] >= cstart && in[j] < cend) {
451abef11f7SSatish Balay           col = in[j] - cstart;
4529566063dSJacob Faibussowitsch           PetscCall(MatSetValuesBlocked_SeqBAIJ_Inlined(baij->A, row, col, barray, addv, im[i], in[j]));
453f7d195e4SLawrence Mitchell         } else if (in[j] < 0) {
454f7d195e4SLawrence Mitchell           continue;
455f7d195e4SLawrence Mitchell         } else {
456f7d195e4SLawrence Mitchell           PetscCheck(in[j] < baij->Nbs, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Block indexed column too large %" PetscInt_FMT " max %" PetscInt_FMT, in[j], baij->Nbs - 1);
457ab26458aSBarry Smith           if (mat->was_assembled) {
45848a46eb9SPierre Jolivet             if (!baij->colmap) PetscCall(MatCreateColmap_MPIBAIJ_Private(mat));
459a5eb4965SSatish Balay 
460aa482453SBarry Smith #if defined(PETSC_USE_CTABLE)
461eec179cfSJacob Faibussowitsch             PetscCall(PetscHMapIGetWithDefault(baij->colmap, in[j] + 1, 0, &col));
462b758ae8cSBarry Smith             col = col < 1 ? -1 : (col - 1) / bs;
46348e59246SSatish Balay #else
464b758ae8cSBarry Smith             col = baij->colmap[in[j]] < 1 ? -1 : (baij->colmap[in[j]] - 1) / bs;
46548e59246SSatish Balay #endif
466f4f49eeaSPierre Jolivet             if (col < 0 && !((Mat_SeqBAIJ *)baij->B->data)->nonew) {
4679566063dSJacob Faibussowitsch               PetscCall(MatDisAssemble_MPIBAIJ(mat));
468ab26458aSBarry Smith               col = in[j];
4695f80ce2aSJacob Faibussowitsch             } else PetscCheck(col >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new blocked indexed nonzero block (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", im[i], in[j]);
470db4deed7SKarl Rupp           } else col = in[j];
4719566063dSJacob Faibussowitsch           PetscCall(MatSetValuesBlocked_SeqBAIJ_Inlined(baij->B, row, col, barray, addv, im[i], in[j]));
472ab26458aSBarry Smith         }
473ab26458aSBarry Smith       }
474d64ed03dSBarry Smith     } else {
4755f80ce2aSJacob Faibussowitsch       PetscCheck(!mat->nooffprocentries, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Setting off process block indexed row %" PetscInt_FMT " even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set", im[i]);
476ab26458aSBarry Smith       if (!baij->donotstash) {
477ff2fd236SBarry Smith         if (roworiented) {
4789566063dSJacob Faibussowitsch           PetscCall(MatStashValuesRowBlocked_Private(&mat->bstash, im[i], n, in, v, m, n, i));
479ff2fd236SBarry Smith         } else {
4809566063dSJacob Faibussowitsch           PetscCall(MatStashValuesColBlocked_Private(&mat->bstash, im[i], n, in, v, m, n, i));
481ff2fd236SBarry Smith         }
482abef11f7SSatish Balay       }
483ab26458aSBarry Smith     }
484ab26458aSBarry Smith   }
4853ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
486ab26458aSBarry Smith }
4876fa18ffdSBarry Smith 
4880bdbc534SSatish Balay #define HASH_KEY             0.6180339887
489b24ad042SBarry Smith #define HASH(size, key, tmp) (tmp = (key) * HASH_KEY, (PetscInt)((size) * (tmp - (PetscInt)tmp)))
490b24ad042SBarry Smith /* #define HASH(size,key) ((PetscInt)((size)*fmod(((key)*HASH_KEY),1))) */
491b24ad042SBarry Smith /* #define HASH(size,key,tmp) ((PetscInt)((size)*fmod(((key)*HASH_KEY),1))) */
49266976f2fSJacob Faibussowitsch static PetscErrorCode MatSetValues_MPIBAIJ_HT(Mat mat, PetscInt m, const PetscInt im[], PetscInt n, const PetscInt in[], const PetscScalar v[], InsertMode addv)
493d71ae5a4SJacob Faibussowitsch {
4940bdbc534SSatish Balay   Mat_MPIBAIJ *baij        = (Mat_MPIBAIJ *)mat->data;
495ace3abfcSBarry Smith   PetscBool    roworiented = baij->roworiented;
496b24ad042SBarry Smith   PetscInt     i, j, row, col;
497d0f46423SBarry Smith   PetscInt     rstart_orig = mat->rmap->rstart;
498d0f46423SBarry Smith   PetscInt     rend_orig = mat->rmap->rend, Nbs = baij->Nbs;
499d0f46423SBarry Smith   PetscInt     h1, key, size = baij->ht_size, bs = mat->rmap->bs, *HT = baij->ht, idx;
500329f5518SBarry Smith   PetscReal    tmp;
5013eda8832SBarry Smith   MatScalar  **HD       = baij->hd, value;
502b24ad042SBarry Smith   PetscInt     total_ct = baij->ht_total_ct, insert_ct = baij->ht_insert_ct;
5030bdbc534SSatish Balay 
5040bdbc534SSatish Balay   PetscFunctionBegin;
5050bdbc534SSatish Balay   for (i = 0; i < m; i++) {
50676bd3646SJed Brown     if (PetscDefined(USE_DEBUG)) {
5075f80ce2aSJacob Faibussowitsch       PetscCheck(im[i] >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Negative row");
5085f80ce2aSJacob Faibussowitsch       PetscCheck(im[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, im[i], mat->rmap->N - 1);
50976bd3646SJed Brown     }
5100bdbc534SSatish Balay     row = im[i];
511c2760754SSatish Balay     if (row >= rstart_orig && row < rend_orig) {
5120bdbc534SSatish Balay       for (j = 0; j < n; j++) {
5130bdbc534SSatish Balay         col = in[j];
514db4deed7SKarl Rupp         if (roworiented) value = v[i * n + j];
515db4deed7SKarl Rupp         else value = v[i + j * m];
516b24ad042SBarry Smith         /* Look up PetscInto the Hash Table */
517c2760754SSatish Balay         key = (row / bs) * Nbs + (col / bs) + 1;
518c2760754SSatish Balay         h1  = HASH(size, key, tmp);
5190bdbc534SSatish Balay 
520c2760754SSatish Balay         idx = h1;
52176bd3646SJed Brown         if (PetscDefined(USE_DEBUG)) {
522187ce0cbSSatish Balay           insert_ct++;
523187ce0cbSSatish Balay           total_ct++;
524187ce0cbSSatish Balay           if (HT[idx] != key) {
525fbccb6d4SPierre Jolivet             for (idx = h1; (idx < size) && (HT[idx] != key); idx++, total_ct++);
526187ce0cbSSatish Balay             if (idx == size) {
527fbccb6d4SPierre Jolivet               for (idx = 0; (idx < h1) && (HT[idx] != key); idx++, total_ct++);
5285f80ce2aSJacob Faibussowitsch               PetscCheck(idx != h1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "(%" PetscInt_FMT ",%" PetscInt_FMT ") has no entry in the hash table", row, col);
529187ce0cbSSatish Balay             }
530187ce0cbSSatish Balay           }
53176bd3646SJed Brown         } else if (HT[idx] != key) {
532fbccb6d4SPierre Jolivet           for (idx = h1; (idx < size) && (HT[idx] != key); idx++);
533c2760754SSatish Balay           if (idx == size) {
534fbccb6d4SPierre Jolivet             for (idx = 0; (idx < h1) && (HT[idx] != key); idx++);
5355f80ce2aSJacob Faibussowitsch             PetscCheck(idx != h1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "(%" PetscInt_FMT ",%" PetscInt_FMT ") has no entry in the hash table", row, col);
536c2760754SSatish Balay           }
537c2760754SSatish Balay         }
538c2760754SSatish Balay         /* A HASH table entry is found, so insert the values at the correct address */
539c2760754SSatish Balay         if (addv == ADD_VALUES) *(HD[idx] + (col % bs) * bs + (row % bs)) += value;
540c2760754SSatish Balay         else *(HD[idx] + (col % bs) * bs + (row % bs)) = value;
5410bdbc534SSatish Balay       }
54226fbe8dcSKarl Rupp     } else if (!baij->donotstash) {
543ff2fd236SBarry Smith       if (roworiented) {
5449566063dSJacob Faibussowitsch         PetscCall(MatStashValuesRow_Private(&mat->stash, im[i], n, in, v + i * n, PETSC_FALSE));
545ff2fd236SBarry Smith       } else {
5469566063dSJacob Faibussowitsch         PetscCall(MatStashValuesCol_Private(&mat->stash, im[i], n, in, v + i, m, PETSC_FALSE));
5470bdbc534SSatish Balay       }
5480bdbc534SSatish Balay     }
5490bdbc534SSatish Balay   }
55076bd3646SJed Brown   if (PetscDefined(USE_DEBUG)) {
551abf3b562SBarry Smith     baij->ht_total_ct += total_ct;
552abf3b562SBarry Smith     baij->ht_insert_ct += insert_ct;
55376bd3646SJed Brown   }
5543ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
5550bdbc534SSatish Balay }
5560bdbc534SSatish Balay 
55766976f2fSJacob Faibussowitsch static PetscErrorCode MatSetValuesBlocked_MPIBAIJ_HT(Mat mat, PetscInt m, const PetscInt im[], PetscInt n, const PetscInt in[], const PetscScalar v[], InsertMode addv)
558d71ae5a4SJacob Faibussowitsch {
5590bdbc534SSatish Balay   Mat_MPIBAIJ       *baij        = (Mat_MPIBAIJ *)mat->data;
560ace3abfcSBarry Smith   PetscBool          roworiented = baij->roworiented;
561b24ad042SBarry Smith   PetscInt           i, j, ii, jj, row, col;
562899cda47SBarry Smith   PetscInt           rstart = baij->rstartbs;
563d0f46423SBarry Smith   PetscInt           rend = mat->rmap->rend, stepval, bs = mat->rmap->bs, bs2 = baij->bs2, nbs2 = n * bs2;
564b24ad042SBarry Smith   PetscInt           h1, key, size = baij->ht_size, idx, *HT = baij->ht, Nbs = baij->Nbs;
565329f5518SBarry Smith   PetscReal          tmp;
5663eda8832SBarry Smith   MatScalar        **HD = baij->hd, *baij_a;
567dd6ea824SBarry Smith   const PetscScalar *v_t, *value;
568b24ad042SBarry Smith   PetscInt           total_ct = baij->ht_total_ct, insert_ct = baij->ht_insert_ct;
5690bdbc534SSatish Balay 
570d0a41580SSatish Balay   PetscFunctionBegin;
57126fbe8dcSKarl Rupp   if (roworiented) stepval = (n - 1) * bs;
57226fbe8dcSKarl Rupp   else stepval = (m - 1) * bs;
57326fbe8dcSKarl Rupp 
5740bdbc534SSatish Balay   for (i = 0; i < m; i++) {
57576bd3646SJed Brown     if (PetscDefined(USE_DEBUG)) {
5765f80ce2aSJacob Faibussowitsch       PetscCheck(im[i] >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Negative row: %" PetscInt_FMT, im[i]);
5775f80ce2aSJacob Faibussowitsch       PetscCheck(im[i] < baij->Mbs, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, im[i], baij->Mbs - 1);
57876bd3646SJed Brown     }
5790bdbc534SSatish Balay     row = im[i];
580ab715e2cSSatish Balay     v_t = v + i * nbs2;
581c2760754SSatish Balay     if (row >= rstart && row < rend) {
5820bdbc534SSatish Balay       for (j = 0; j < n; j++) {
5830bdbc534SSatish Balay         col = in[j];
5840bdbc534SSatish Balay 
5850bdbc534SSatish Balay         /* Look up into the Hash Table */
586c2760754SSatish Balay         key = row * Nbs + col + 1;
587c2760754SSatish Balay         h1  = HASH(size, key, tmp);
5880bdbc534SSatish Balay 
589c2760754SSatish Balay         idx = h1;
59076bd3646SJed Brown         if (PetscDefined(USE_DEBUG)) {
591187ce0cbSSatish Balay           total_ct++;
592187ce0cbSSatish Balay           insert_ct++;
593187ce0cbSSatish Balay           if (HT[idx] != key) {
594fbccb6d4SPierre Jolivet             for (idx = h1; (idx < size) && (HT[idx] != key); idx++, total_ct++);
595187ce0cbSSatish Balay             if (idx == size) {
596fbccb6d4SPierre Jolivet               for (idx = 0; (idx < h1) && (HT[idx] != key); idx++, total_ct++);
5975f80ce2aSJacob Faibussowitsch               PetscCheck(idx != h1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "(%" PetscInt_FMT ",%" PetscInt_FMT ") has no entry in the hash table", row, col);
598187ce0cbSSatish Balay             }
599187ce0cbSSatish Balay           }
60076bd3646SJed Brown         } else if (HT[idx] != key) {
601fbccb6d4SPierre Jolivet           for (idx = h1; (idx < size) && (HT[idx] != key); idx++);
602c2760754SSatish Balay           if (idx == size) {
603fbccb6d4SPierre Jolivet             for (idx = 0; (idx < h1) && (HT[idx] != key); idx++);
6045f80ce2aSJacob Faibussowitsch             PetscCheck(idx != h1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "(%" PetscInt_FMT ",%" PetscInt_FMT ") has no entry in the hash table", row, col);
605c2760754SSatish Balay           }
606c2760754SSatish Balay         }
607c2760754SSatish Balay         baij_a = HD[idx];
6080bdbc534SSatish Balay         if (roworiented) {
609c2760754SSatish Balay           /*value = v + i*(stepval+bs)*bs + j*bs;*/
610187ce0cbSSatish Balay           /* value = v + (i*(stepval+bs)+j)*bs; */
611187ce0cbSSatish Balay           value = v_t;
612187ce0cbSSatish Balay           v_t += bs;
613fef45726SSatish Balay           if (addv == ADD_VALUES) {
614c2760754SSatish Balay             for (ii = 0; ii < bs; ii++, value += stepval) {
615ad540459SPierre Jolivet               for (jj = ii; jj < bs2; jj += bs) baij_a[jj] += *value++;
616b4cc0f5aSSatish Balay             }
617fef45726SSatish Balay           } else {
618c2760754SSatish Balay             for (ii = 0; ii < bs; ii++, value += stepval) {
619ad540459SPierre Jolivet               for (jj = ii; jj < bs2; jj += bs) baij_a[jj] = *value++;
620fef45726SSatish Balay             }
621fef45726SSatish Balay           }
6220bdbc534SSatish Balay         } else {
6230bdbc534SSatish Balay           value = v + j * (stepval + bs) * bs + i * bs;
624fef45726SSatish Balay           if (addv == ADD_VALUES) {
625b4cc0f5aSSatish Balay             for (ii = 0; ii < bs; ii++, value += stepval, baij_a += bs) {
626ad540459SPierre Jolivet               for (jj = 0; jj < bs; jj++) baij_a[jj] += *value++;
627fef45726SSatish Balay             }
628fef45726SSatish Balay           } else {
629fef45726SSatish Balay             for (ii = 0; ii < bs; ii++, value += stepval, baij_a += bs) {
630ad540459SPierre Jolivet               for (jj = 0; jj < bs; jj++) baij_a[jj] = *value++;
631b4cc0f5aSSatish Balay             }
6320bdbc534SSatish Balay           }
6330bdbc534SSatish Balay         }
6340bdbc534SSatish Balay       }
6350bdbc534SSatish Balay     } else {
6360bdbc534SSatish Balay       if (!baij->donotstash) {
6370bdbc534SSatish Balay         if (roworiented) {
6389566063dSJacob Faibussowitsch           PetscCall(MatStashValuesRowBlocked_Private(&mat->bstash, im[i], n, in, v, m, n, i));
6390bdbc534SSatish Balay         } else {
6409566063dSJacob Faibussowitsch           PetscCall(MatStashValuesColBlocked_Private(&mat->bstash, im[i], n, in, v, m, n, i));
6410bdbc534SSatish Balay         }
6420bdbc534SSatish Balay       }
6430bdbc534SSatish Balay     }
6440bdbc534SSatish Balay   }
64576bd3646SJed Brown   if (PetscDefined(USE_DEBUG)) {
646abf3b562SBarry Smith     baij->ht_total_ct += total_ct;
647abf3b562SBarry Smith     baij->ht_insert_ct += insert_ct;
64876bd3646SJed Brown   }
6493ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6500bdbc534SSatish Balay }
651133cdb44SSatish Balay 
65266976f2fSJacob Faibussowitsch static PetscErrorCode MatGetValues_MPIBAIJ(Mat mat, PetscInt m, const PetscInt idxm[], PetscInt n, const PetscInt idxn[], PetscScalar v[])
653d71ae5a4SJacob Faibussowitsch {
654d6de1c52SSatish Balay   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data;
655d0f46423SBarry Smith   PetscInt     bs = mat->rmap->bs, i, j, bsrstart = mat->rmap->rstart, bsrend = mat->rmap->rend;
656d0f46423SBarry Smith   PetscInt     bscstart = mat->cmap->rstart, bscend = mat->cmap->rend, row, col, data;
657d6de1c52SSatish Balay 
658133cdb44SSatish Balay   PetscFunctionBegin;
659d6de1c52SSatish Balay   for (i = 0; i < m; i++) {
66054c59aa7SJacob Faibussowitsch     if (idxm[i] < 0) continue; /* negative row */
66154c59aa7SJacob Faibussowitsch     PetscCheck(idxm[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, idxm[i], mat->rmap->N - 1);
662966bd95aSPierre Jolivet     PetscCheck(idxm[i] >= bsrstart && idxm[i] < bsrend, PETSC_COMM_SELF, PETSC_ERR_SUP, "Only local values currently supported");
663d6de1c52SSatish Balay     row = idxm[i] - bsrstart;
664d6de1c52SSatish Balay     for (j = 0; j < n; j++) {
66554c59aa7SJacob Faibussowitsch       if (idxn[j] < 0) continue; /* negative column */
66654c59aa7SJacob Faibussowitsch       PetscCheck(idxn[j] < mat->cmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, idxn[j], mat->cmap->N - 1);
667d6de1c52SSatish Balay       if (idxn[j] >= bscstart && idxn[j] < bscend) {
668d6de1c52SSatish Balay         col = idxn[j] - bscstart;
6699566063dSJacob Faibussowitsch         PetscCall(MatGetValues_SeqBAIJ(baij->A, 1, &row, 1, &col, v + i * n + j));
670d64ed03dSBarry Smith       } else {
67148a46eb9SPierre Jolivet         if (!baij->colmap) PetscCall(MatCreateColmap_MPIBAIJ_Private(mat));
672aa482453SBarry Smith #if defined(PETSC_USE_CTABLE)
673eec179cfSJacob Faibussowitsch         PetscCall(PetscHMapIGetWithDefault(baij->colmap, idxn[j] / bs + 1, 0, &data));
674fa46199cSSatish Balay         data--;
67548e59246SSatish Balay #else
67648e59246SSatish Balay         data = baij->colmap[idxn[j] / bs] - 1;
67748e59246SSatish Balay #endif
678966bd95aSPierre Jolivet         if (data < 0 || baij->garray[data / bs] != idxn[j] / bs) *(v + i * n + j) = 0.0;
679d9d09a02SSatish Balay         else {
68048e59246SSatish Balay           col = data + idxn[j] % bs;
6819566063dSJacob Faibussowitsch           PetscCall(MatGetValues_SeqBAIJ(baij->B, 1, &row, 1, &col, v + i * n + j));
682d6de1c52SSatish Balay         }
683d6de1c52SSatish Balay       }
684d6de1c52SSatish Balay     }
685d6de1c52SSatish Balay   }
6863ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
687d6de1c52SSatish Balay }
688d6de1c52SSatish Balay 
68966976f2fSJacob Faibussowitsch static PetscErrorCode MatNorm_MPIBAIJ(Mat mat, NormType type, PetscReal *nrm)
690d71ae5a4SJacob Faibussowitsch {
691d6de1c52SSatish Balay   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data;
692d6de1c52SSatish Balay   Mat_SeqBAIJ *amat = (Mat_SeqBAIJ *)baij->A->data, *bmat = (Mat_SeqBAIJ *)baij->B->data;
693d0f46423SBarry Smith   PetscInt     i, j, bs2 = baij->bs2, bs = baij->A->rmap->bs, nz, row, col;
694329f5518SBarry Smith   PetscReal    sum = 0.0;
6953eda8832SBarry Smith   MatScalar   *v;
696d6de1c52SSatish Balay 
697d64ed03dSBarry Smith   PetscFunctionBegin;
698d6de1c52SSatish Balay   if (baij->size == 1) {
6999566063dSJacob Faibussowitsch     PetscCall(MatNorm(baij->A, type, nrm));
700d6de1c52SSatish Balay   } else {
701d6de1c52SSatish Balay     if (type == NORM_FROBENIUS) {
702d6de1c52SSatish Balay       v  = amat->a;
7038a62d963SHong Zhang       nz = amat->nz * bs2;
7048a62d963SHong Zhang       for (i = 0; i < nz; i++) {
7059371c9d4SSatish Balay         sum += PetscRealPart(PetscConj(*v) * (*v));
7069371c9d4SSatish Balay         v++;
707d6de1c52SSatish Balay       }
708d6de1c52SSatish Balay       v  = bmat->a;
7098a62d963SHong Zhang       nz = bmat->nz * bs2;
7108a62d963SHong Zhang       for (i = 0; i < nz; i++) {
7119371c9d4SSatish Balay         sum += PetscRealPart(PetscConj(*v) * (*v));
7129371c9d4SSatish Balay         v++;
713d6de1c52SSatish Balay       }
714462c564dSBarry Smith       PetscCallMPI(MPIU_Allreduce(&sum, nrm, 1, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)mat)));
7158f1a2a5eSBarry Smith       *nrm = PetscSqrtReal(*nrm);
7168a62d963SHong Zhang     } else if (type == NORM_1) { /* max column sum */
717e91c04dfSPierre Jolivet       PetscReal *tmp;
718899cda47SBarry Smith       PetscInt  *jj, *garray = baij->garray, cstart = baij->rstartbs;
7196497c311SBarry Smith 
7209566063dSJacob Faibussowitsch       PetscCall(PetscCalloc1(mat->cmap->N, &tmp));
7219371c9d4SSatish Balay       v  = amat->a;
7229371c9d4SSatish Balay       jj = amat->j;
7238a62d963SHong Zhang       for (i = 0; i < amat->nz; i++) {
7248a62d963SHong Zhang         for (j = 0; j < bs; j++) {
7258a62d963SHong Zhang           col = bs * (cstart + *jj) + j; /* column index */
7268a62d963SHong Zhang           for (row = 0; row < bs; row++) {
7279371c9d4SSatish Balay             tmp[col] += PetscAbsScalar(*v);
7289371c9d4SSatish Balay             v++;
7298a62d963SHong Zhang           }
7308a62d963SHong Zhang         }
7318a62d963SHong Zhang         jj++;
7328a62d963SHong Zhang       }
7339371c9d4SSatish Balay       v  = bmat->a;
7349371c9d4SSatish Balay       jj = bmat->j;
7358a62d963SHong Zhang       for (i = 0; i < bmat->nz; i++) {
7368a62d963SHong Zhang         for (j = 0; j < bs; j++) {
7378a62d963SHong Zhang           col = bs * garray[*jj] + j;
7388a62d963SHong Zhang           for (row = 0; row < bs; row++) {
7399371c9d4SSatish Balay             tmp[col] += PetscAbsScalar(*v);
7409371c9d4SSatish Balay             v++;
7418a62d963SHong Zhang           }
7428a62d963SHong Zhang         }
7438a62d963SHong Zhang         jj++;
7448a62d963SHong Zhang       }
745e91c04dfSPierre Jolivet       PetscCallMPI(MPIU_Allreduce(MPI_IN_PLACE, tmp, mat->cmap->N, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)mat)));
7468a62d963SHong Zhang       *nrm = 0.0;
747d0f46423SBarry Smith       for (j = 0; j < mat->cmap->N; j++) {
748e91c04dfSPierre Jolivet         if (tmp[j] > *nrm) *nrm = tmp[j];
7498a62d963SHong Zhang       }
7509566063dSJacob Faibussowitsch       PetscCall(PetscFree(tmp));
7518a62d963SHong Zhang     } else if (type == NORM_INFINITY) { /* max row sum */
752577dd1f9SKris Buschelman       PetscReal *sums;
7539566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(bs, &sums));
7548a62d963SHong Zhang       sum = 0.0;
7558a62d963SHong Zhang       for (j = 0; j < amat->mbs; j++) {
7568a62d963SHong Zhang         for (row = 0; row < bs; row++) sums[row] = 0.0;
7578a62d963SHong Zhang         v  = amat->a + bs2 * amat->i[j];
7588a62d963SHong Zhang         nz = amat->i[j + 1] - amat->i[j];
7598a62d963SHong Zhang         for (i = 0; i < nz; i++) {
7608a62d963SHong Zhang           for (col = 0; col < bs; col++) {
7618a62d963SHong Zhang             for (row = 0; row < bs; row++) {
7629371c9d4SSatish Balay               sums[row] += PetscAbsScalar(*v);
7639371c9d4SSatish Balay               v++;
7648a62d963SHong Zhang             }
7658a62d963SHong Zhang           }
7668a62d963SHong Zhang         }
7678a62d963SHong Zhang         v  = bmat->a + bs2 * bmat->i[j];
7688a62d963SHong Zhang         nz = bmat->i[j + 1] - bmat->i[j];
7698a62d963SHong Zhang         for (i = 0; i < nz; i++) {
7708a62d963SHong Zhang           for (col = 0; col < bs; col++) {
7718a62d963SHong Zhang             for (row = 0; row < bs; row++) {
7729371c9d4SSatish Balay               sums[row] += PetscAbsScalar(*v);
7739371c9d4SSatish Balay               v++;
7748a62d963SHong Zhang             }
7758a62d963SHong Zhang           }
7768a62d963SHong Zhang         }
7778a62d963SHong Zhang         for (row = 0; row < bs; row++) {
7788a62d963SHong Zhang           if (sums[row] > sum) sum = sums[row];
7798a62d963SHong Zhang         }
7808a62d963SHong Zhang       }
781462c564dSBarry Smith       PetscCallMPI(MPIU_Allreduce(&sum, nrm, 1, MPIU_REAL, MPIU_MAX, PetscObjectComm((PetscObject)mat)));
7829566063dSJacob Faibussowitsch       PetscCall(PetscFree(sums));
783ce94432eSBarry Smith     } else SETERRQ(PetscObjectComm((PetscObject)mat), PETSC_ERR_SUP, "No support for this norm yet");
784d64ed03dSBarry Smith   }
7853ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
786d6de1c52SSatish Balay }
78757b952d6SSatish Balay 
788fef45726SSatish Balay /*
789fef45726SSatish Balay   Creates the hash table, and sets the table
790fef45726SSatish Balay   This table is created only once.
79146091a0eSPierre Jolivet   If new entries need to be added to the matrix
792fef45726SSatish Balay   then the hash table has to be destroyed and
793fef45726SSatish Balay   recreated.
794fef45726SSatish Balay */
79566976f2fSJacob Faibussowitsch static PetscErrorCode MatCreateHashTable_MPIBAIJ_Private(Mat mat, PetscReal factor)
796d71ae5a4SJacob Faibussowitsch {
797596b8d2eSBarry Smith   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data;
798596b8d2eSBarry Smith   Mat          A = baij->A, B = baij->B;
799596b8d2eSBarry Smith   Mat_SeqBAIJ *a = (Mat_SeqBAIJ *)A->data, *b = (Mat_SeqBAIJ *)B->data;
800b24ad042SBarry Smith   PetscInt     i, j, k, nz = a->nz + b->nz, h1, *ai = a->i, *aj = a->j, *bi = b->i, *bj = b->j;
801fca92195SBarry Smith   PetscInt     ht_size, bs2 = baij->bs2, rstart = baij->rstartbs;
802899cda47SBarry Smith   PetscInt     cstart = baij->cstartbs, *garray = baij->garray, row, col, Nbs = baij->Nbs;
803b24ad042SBarry Smith   PetscInt    *HT, key;
8043eda8832SBarry Smith   MatScalar  **HD;
805329f5518SBarry Smith   PetscReal    tmp;
8066cf91177SBarry Smith #if defined(PETSC_USE_INFO)
807b24ad042SBarry Smith   PetscInt ct = 0, max = 0;
8084a15367fSSatish Balay #endif
809fef45726SSatish Balay 
810d64ed03dSBarry Smith   PetscFunctionBegin;
8113ba16761SJacob Faibussowitsch   if (baij->ht) PetscFunctionReturn(PETSC_SUCCESS);
812fef45726SSatish Balay 
813fca92195SBarry Smith   baij->ht_size = (PetscInt)(factor * nz);
814fca92195SBarry Smith   ht_size       = baij->ht_size;
8150bdbc534SSatish Balay 
816fef45726SSatish Balay   /* Allocate Memory for Hash Table */
8179566063dSJacob Faibussowitsch   PetscCall(PetscCalloc2(ht_size, &baij->hd, ht_size, &baij->ht));
818b9e4cc15SSatish Balay   HD = baij->hd;
819a07cd24cSSatish Balay   HT = baij->ht;
820b9e4cc15SSatish Balay 
821596b8d2eSBarry Smith   /* Loop Over A */
8220bdbc534SSatish Balay   for (i = 0; i < a->mbs; i++) {
823596b8d2eSBarry Smith     for (j = ai[i]; j < ai[i + 1]; j++) {
8240bdbc534SSatish Balay       row = i + rstart;
8250bdbc534SSatish Balay       col = aj[j] + cstart;
826596b8d2eSBarry Smith 
827187ce0cbSSatish Balay       key = row * Nbs + col + 1;
828fca92195SBarry Smith       h1  = HASH(ht_size, key, tmp);
829fca92195SBarry Smith       for (k = 0; k < ht_size; k++) {
830fca92195SBarry Smith         if (!HT[(h1 + k) % ht_size]) {
831fca92195SBarry Smith           HT[(h1 + k) % ht_size] = key;
832fca92195SBarry Smith           HD[(h1 + k) % ht_size] = a->a + j * bs2;
833596b8d2eSBarry Smith           break;
8346cf91177SBarry Smith #if defined(PETSC_USE_INFO)
835187ce0cbSSatish Balay         } else {
836187ce0cbSSatish Balay           ct++;
837187ce0cbSSatish Balay #endif
838596b8d2eSBarry Smith         }
839187ce0cbSSatish Balay       }
8406cf91177SBarry Smith #if defined(PETSC_USE_INFO)
841187ce0cbSSatish Balay       if (k > max) max = k;
842187ce0cbSSatish Balay #endif
843596b8d2eSBarry Smith     }
844596b8d2eSBarry Smith   }
845596b8d2eSBarry Smith   /* Loop Over B */
8460bdbc534SSatish Balay   for (i = 0; i < b->mbs; i++) {
847596b8d2eSBarry Smith     for (j = bi[i]; j < bi[i + 1]; j++) {
8480bdbc534SSatish Balay       row = i + rstart;
8490bdbc534SSatish Balay       col = garray[bj[j]];
850187ce0cbSSatish Balay       key = row * Nbs + col + 1;
851fca92195SBarry Smith       h1  = HASH(ht_size, key, tmp);
852fca92195SBarry Smith       for (k = 0; k < ht_size; k++) {
853fca92195SBarry Smith         if (!HT[(h1 + k) % ht_size]) {
854fca92195SBarry Smith           HT[(h1 + k) % ht_size] = key;
855fca92195SBarry Smith           HD[(h1 + k) % ht_size] = b->a + j * bs2;
856596b8d2eSBarry Smith           break;
8576cf91177SBarry Smith #if defined(PETSC_USE_INFO)
858187ce0cbSSatish Balay         } else {
859187ce0cbSSatish Balay           ct++;
860187ce0cbSSatish Balay #endif
861596b8d2eSBarry Smith         }
862187ce0cbSSatish Balay       }
8636cf91177SBarry Smith #if defined(PETSC_USE_INFO)
864187ce0cbSSatish Balay       if (k > max) max = k;
865187ce0cbSSatish Balay #endif
866596b8d2eSBarry Smith     }
867596b8d2eSBarry Smith   }
868596b8d2eSBarry Smith 
869596b8d2eSBarry Smith   /* Print Summary */
8706cf91177SBarry Smith #if defined(PETSC_USE_INFO)
871fca92195SBarry Smith   for (i = 0, j = 0; i < ht_size; i++) {
87226fbe8dcSKarl Rupp     if (HT[i]) j++;
873c38d4ed2SBarry Smith   }
874835f2295SStefano Zampini   PetscCall(PetscInfo(mat, "Average Search = %5.2g,max search = %" PetscInt_FMT "\n", (!j) ? 0.0 : (double)(((PetscReal)(ct + j)) / j), max));
875187ce0cbSSatish Balay #endif
8763ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
877596b8d2eSBarry Smith }
87857b952d6SSatish Balay 
87966976f2fSJacob Faibussowitsch static PetscErrorCode MatAssemblyBegin_MPIBAIJ(Mat mat, MatAssemblyType mode)
880d71ae5a4SJacob Faibussowitsch {
881bbb85fb3SSatish Balay   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data;
882b24ad042SBarry Smith   PetscInt     nstash, reallocs;
883bbb85fb3SSatish Balay 
884bbb85fb3SSatish Balay   PetscFunctionBegin;
8853ba16761SJacob Faibussowitsch   if (baij->donotstash || mat->nooffprocentries) PetscFunctionReturn(PETSC_SUCCESS);
886bbb85fb3SSatish Balay 
8879566063dSJacob Faibussowitsch   PetscCall(MatStashScatterBegin_Private(mat, &mat->stash, mat->rmap->range));
8889566063dSJacob Faibussowitsch   PetscCall(MatStashScatterBegin_Private(mat, &mat->bstash, baij->rangebs));
8899566063dSJacob Faibussowitsch   PetscCall(MatStashGetInfo_Private(&mat->stash, &nstash, &reallocs));
8909566063dSJacob Faibussowitsch   PetscCall(PetscInfo(mat, "Stash has %" PetscInt_FMT " entries,uses %" PetscInt_FMT " mallocs.\n", nstash, reallocs));
8919566063dSJacob Faibussowitsch   PetscCall(MatStashGetInfo_Private(&mat->bstash, &nstash, &reallocs));
8929566063dSJacob Faibussowitsch   PetscCall(PetscInfo(mat, "Block-Stash has %" PetscInt_FMT " entries, uses %" PetscInt_FMT " mallocs.\n", nstash, reallocs));
8933ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
894bbb85fb3SSatish Balay }
895bbb85fb3SSatish Balay 
89666976f2fSJacob Faibussowitsch static PetscErrorCode MatAssemblyEnd_MPIBAIJ(Mat mat, MatAssemblyType mode)
897d71ae5a4SJacob Faibussowitsch {
898bbb85fb3SSatish Balay   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data;
89991c97fd4SSatish Balay   Mat_SeqBAIJ *a    = (Mat_SeqBAIJ *)baij->A->data;
900b24ad042SBarry Smith   PetscInt     i, j, rstart, ncols, flg, bs2 = baij->bs2;
901e44c0bd4SBarry Smith   PetscInt    *row, *col;
902c0edf612SJunchao Zhang   PetscBool    r1, r2, r3, all_assembled;
9033eda8832SBarry Smith   MatScalar   *val;
904b24ad042SBarry Smith   PetscMPIInt  n;
905bbb85fb3SSatish Balay 
906bbb85fb3SSatish Balay   PetscFunctionBegin;
9075fd66863SKarl Rupp   /* do not use 'b=(Mat_SeqBAIJ*)baij->B->data' as B can be reset in disassembly */
9084cb17eb5SBarry Smith   if (!baij->donotstash && !mat->nooffprocentries) {
909a2d1c673SSatish Balay     while (1) {
9109566063dSJacob Faibussowitsch       PetscCall(MatStashScatterGetMesg_Private(&mat->stash, &n, &row, &col, &val, &flg));
911a2d1c673SSatish Balay       if (!flg) break;
912a2d1c673SSatish Balay 
913bbb85fb3SSatish Balay       for (i = 0; i < n;) {
914bbb85fb3SSatish Balay         /* Now identify the consecutive vals belonging to the same row */
91526fbe8dcSKarl Rupp         for (j = i, rstart = row[j]; j < n; j++) {
91626fbe8dcSKarl Rupp           if (row[j] != rstart) break;
91726fbe8dcSKarl Rupp         }
918bbb85fb3SSatish Balay         if (j < n) ncols = j - i;
919bbb85fb3SSatish Balay         else ncols = n - i;
920bbb85fb3SSatish Balay         /* Now assemble all these values with a single function call */
9219566063dSJacob Faibussowitsch         PetscCall(MatSetValues_MPIBAIJ(mat, 1, row + i, ncols, col + i, val + i, mat->insertmode));
922bbb85fb3SSatish Balay         i = j;
923bbb85fb3SSatish Balay       }
924bbb85fb3SSatish Balay     }
9259566063dSJacob Faibussowitsch     PetscCall(MatStashScatterEnd_Private(&mat->stash));
926a2d1c673SSatish Balay     /* Now process the block-stash. Since the values are stashed column-oriented,
9275e116b59SBarry Smith        set the row-oriented flag to column-oriented, and after MatSetValues()
928a2d1c673SSatish Balay        restore the original flags */
929a2d1c673SSatish Balay     r1 = baij->roworiented;
930a2d1c673SSatish Balay     r2 = a->roworiented;
93191c97fd4SSatish Balay     r3 = ((Mat_SeqBAIJ *)baij->B->data)->roworiented;
93226fbe8dcSKarl Rupp 
9337c922b88SBarry Smith     baij->roworiented                           = PETSC_FALSE;
9347c922b88SBarry Smith     a->roworiented                              = PETSC_FALSE;
935f4f49eeaSPierre Jolivet     ((Mat_SeqBAIJ *)baij->B->data)->roworiented = PETSC_FALSE;
936a2d1c673SSatish Balay     while (1) {
9379566063dSJacob Faibussowitsch       PetscCall(MatStashScatterGetMesg_Private(&mat->bstash, &n, &row, &col, &val, &flg));
938a2d1c673SSatish Balay       if (!flg) break;
939a2d1c673SSatish Balay 
940a2d1c673SSatish Balay       for (i = 0; i < n;) {
941a2d1c673SSatish Balay         /* Now identify the consecutive vals belonging to the same row */
94226fbe8dcSKarl Rupp         for (j = i, rstart = row[j]; j < n; j++) {
94326fbe8dcSKarl Rupp           if (row[j] != rstart) break;
94426fbe8dcSKarl Rupp         }
945a2d1c673SSatish Balay         if (j < n) ncols = j - i;
946a2d1c673SSatish Balay         else ncols = n - i;
9479566063dSJacob Faibussowitsch         PetscCall(MatSetValuesBlocked_MPIBAIJ(mat, 1, row + i, ncols, col + i, val + i * bs2, mat->insertmode));
948a2d1c673SSatish Balay         i = j;
949a2d1c673SSatish Balay       }
950a2d1c673SSatish Balay     }
9519566063dSJacob Faibussowitsch     PetscCall(MatStashScatterEnd_Private(&mat->bstash));
95226fbe8dcSKarl Rupp 
953a2d1c673SSatish Balay     baij->roworiented                           = r1;
954a2d1c673SSatish Balay     a->roworiented                              = r2;
9555e116b59SBarry Smith     ((Mat_SeqBAIJ *)baij->B->data)->roworiented = r3;
956bbb85fb3SSatish Balay   }
957bbb85fb3SSatish Balay 
9589566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(baij->A, mode));
9599566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(baij->A, mode));
960bbb85fb3SSatish Balay 
961b638e6b4SJunchao Zhang   /* determine if any process has disassembled, if so we must
9626aad120cSJose E. Roman      also disassemble ourselves, in order that we may reassemble. */
963bbb85fb3SSatish Balay   /*
964bbb85fb3SSatish Balay      if nonzero structure of submatrix B cannot change then we know that
965b638e6b4SJunchao Zhang      no process disassembled thus we can skip this stuff
966bbb85fb3SSatish Balay   */
967bbb85fb3SSatish Balay   if (!((Mat_SeqBAIJ *)baij->B->data)->nonew) {
9685440e5dcSBarry Smith     PetscCallMPI(MPIU_Allreduce(&mat->was_assembled, &all_assembled, 1, MPI_C_BOOL, MPI_LAND, PetscObjectComm((PetscObject)mat)));
969c0edf612SJunchao Zhang     if (mat->was_assembled && !all_assembled) PetscCall(MatDisAssemble_MPIBAIJ(mat));
970bbb85fb3SSatish Balay   }
971bbb85fb3SSatish Balay 
97248a46eb9SPierre Jolivet   if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) PetscCall(MatSetUpMultiply_MPIBAIJ(mat));
9739566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(baij->B, mode));
9749566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(baij->B, mode));
975bbb85fb3SSatish Balay 
9766cf91177SBarry Smith #if defined(PETSC_USE_INFO)
977bbb85fb3SSatish Balay   if (baij->ht && mode == MAT_FINAL_ASSEMBLY) {
9789566063dSJacob Faibussowitsch     PetscCall(PetscInfo(mat, "Average Hash Table Search in MatSetValues = %5.2f\n", (double)((PetscReal)baij->ht_total_ct) / baij->ht_insert_ct));
97926fbe8dcSKarl Rupp 
980bbb85fb3SSatish Balay     baij->ht_total_ct  = 0;
981bbb85fb3SSatish Balay     baij->ht_insert_ct = 0;
982bbb85fb3SSatish Balay   }
983bbb85fb3SSatish Balay #endif
984bbb85fb3SSatish Balay   if (baij->ht_flag && !baij->ht && mode == MAT_FINAL_ASSEMBLY) {
9859566063dSJacob Faibussowitsch     PetscCall(MatCreateHashTable_MPIBAIJ_Private(mat, baij->ht_fact));
98626fbe8dcSKarl Rupp 
987bbb85fb3SSatish Balay     mat->ops->setvalues        = MatSetValues_MPIBAIJ_HT;
988bbb85fb3SSatish Balay     mat->ops->setvaluesblocked = MatSetValuesBlocked_MPIBAIJ_HT;
989bbb85fb3SSatish Balay   }
990bbb85fb3SSatish Balay 
9919566063dSJacob Faibussowitsch   PetscCall(PetscFree2(baij->rowvalues, baij->rowindices));
99226fbe8dcSKarl Rupp 
993f4259b30SLisandro Dalcin   baij->rowvalues = NULL;
9944f9cfa9eSBarry Smith 
9954f9cfa9eSBarry Smith   /* if no new nonzero locations are allowed in matrix then only set the matrix state the first time through */
996f4f49eeaSPierre Jolivet   if ((!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) || !((Mat_SeqBAIJ *)baij->A->data)->nonew) {
997e56f5c9eSBarry Smith     PetscObjectState state = baij->A->nonzerostate + baij->B->nonzerostate;
998462c564dSBarry Smith     PetscCallMPI(MPIU_Allreduce(&state, &mat->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)mat)));
999e56f5c9eSBarry Smith   }
10003ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1001bbb85fb3SSatish Balay }
100257b952d6SSatish Balay 
10039804daf3SBarry Smith #include <petscdraw.h>
1004d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatView_MPIBAIJ_ASCIIorDraworSocket(Mat mat, PetscViewer viewer)
1005d71ae5a4SJacob Faibussowitsch {
100657b952d6SSatish Balay   Mat_MPIBAIJ      *baij = (Mat_MPIBAIJ *)mat->data;
10077da1fb6eSBarry Smith   PetscMPIInt       rank = baij->rank;
1008d0f46423SBarry Smith   PetscInt          bs   = mat->rmap->bs;
10099f196a02SMartin Diehl   PetscBool         isascii, isdraw;
1010b0a32e0cSBarry Smith   PetscViewer       sviewer;
1011f3ef73ceSBarry Smith   PetscViewerFormat format;
101257b952d6SSatish Balay 
1013d64ed03dSBarry Smith   PetscFunctionBegin;
10149f196a02SMartin Diehl   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &isascii));
10159566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERDRAW, &isdraw));
10169f196a02SMartin Diehl   if (isascii) {
10179566063dSJacob Faibussowitsch     PetscCall(PetscViewerGetFormat(viewer, &format));
1018456192e2SBarry Smith     if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) {
10194e220ebcSLois Curfman McInnes       MatInfo info;
10209566063dSJacob Faibussowitsch       PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)mat), &rank));
10219566063dSJacob Faibussowitsch       PetscCall(MatGetInfo(mat, MAT_LOCAL, &info));
10229566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPushSynchronized(viewer));
10239371c9d4SSatish Balay       PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] Local rows %" PetscInt_FMT " nz %" PetscInt_FMT " nz alloced %" PetscInt_FMT " bs %" PetscInt_FMT " mem %g\n", rank, mat->rmap->n, (PetscInt)info.nz_used, (PetscInt)info.nz_allocated,
1024835f2295SStefano Zampini                                                    mat->rmap->bs, info.memory));
10259566063dSJacob Faibussowitsch       PetscCall(MatGetInfo(baij->A, MAT_LOCAL, &info));
10269566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] on-diagonal part: nz %" PetscInt_FMT " \n", rank, (PetscInt)info.nz_used));
10279566063dSJacob Faibussowitsch       PetscCall(MatGetInfo(baij->B, MAT_LOCAL, &info));
10289566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] off-diagonal part: nz %" PetscInt_FMT " \n", rank, (PetscInt)info.nz_used));
10299566063dSJacob Faibussowitsch       PetscCall(PetscViewerFlush(viewer));
10309566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPopSynchronized(viewer));
10319566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPrintf(viewer, "Information on VecScatter used in matrix-vector product: \n"));
10329566063dSJacob Faibussowitsch       PetscCall(VecScatterView(baij->Mvctx, viewer));
10333ba16761SJacob Faibussowitsch       PetscFunctionReturn(PETSC_SUCCESS);
1034fb9695e5SSatish Balay     } else if (format == PETSC_VIEWER_ASCII_INFO) {
10359566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPrintf(viewer, "  block size is %" PetscInt_FMT "\n", bs));
10363ba16761SJacob Faibussowitsch       PetscFunctionReturn(PETSC_SUCCESS);
103704929863SHong Zhang     } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) {
10383ba16761SJacob Faibussowitsch       PetscFunctionReturn(PETSC_SUCCESS);
103957b952d6SSatish Balay     }
104057b952d6SSatish Balay   }
104157b952d6SSatish Balay 
10420f5bd95cSBarry Smith   if (isdraw) {
1043b0a32e0cSBarry Smith     PetscDraw draw;
1044ace3abfcSBarry Smith     PetscBool isnull;
10459566063dSJacob Faibussowitsch     PetscCall(PetscViewerDrawGetDraw(viewer, 0, &draw));
10469566063dSJacob Faibussowitsch     PetscCall(PetscDrawIsNull(draw, &isnull));
10473ba16761SJacob Faibussowitsch     if (isnull) PetscFunctionReturn(PETSC_SUCCESS);
104857b952d6SSatish Balay   }
104957b952d6SSatish Balay 
10507da1fb6eSBarry Smith   {
105157b952d6SSatish Balay     /* assemble the entire matrix onto first processor. */
105257b952d6SSatish Balay     Mat          A;
105357b952d6SSatish Balay     Mat_SeqBAIJ *Aloc;
1054d0f46423SBarry Smith     PetscInt     M = mat->rmap->N, N = mat->cmap->N, *ai, *aj, col, i, j, k, *rvals, mbs = baij->mbs;
10553eda8832SBarry Smith     MatScalar   *a;
10563e219373SBarry Smith     const char  *matname;
105757b952d6SSatish Balay 
1058f204ca49SKris Buschelman     /* Here we are creating a temporary matrix, so will assume MPIBAIJ is acceptable */
1059f204ca49SKris Buschelman     /* Perhaps this should be the type of mat? */
10609566063dSJacob Faibussowitsch     PetscCall(MatCreate(PetscObjectComm((PetscObject)mat), &A));
1061dd400576SPatrick Sanan     if (rank == 0) {
10629566063dSJacob Faibussowitsch       PetscCall(MatSetSizes(A, M, N, M, N));
1063d64ed03dSBarry Smith     } else {
10649566063dSJacob Faibussowitsch       PetscCall(MatSetSizes(A, 0, 0, M, N));
106557b952d6SSatish Balay     }
10669566063dSJacob Faibussowitsch     PetscCall(MatSetType(A, MATMPIBAIJ));
10679566063dSJacob Faibussowitsch     PetscCall(MatMPIBAIJSetPreallocation(A, mat->rmap->bs, 0, NULL, 0, NULL));
10689566063dSJacob Faibussowitsch     PetscCall(MatSetOption(A, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_FALSE));
106957b952d6SSatish Balay 
107057b952d6SSatish Balay     /* copy over the A part */
107157b952d6SSatish Balay     Aloc = (Mat_SeqBAIJ *)baij->A->data;
10729371c9d4SSatish Balay     ai   = Aloc->i;
10739371c9d4SSatish Balay     aj   = Aloc->j;
10749371c9d4SSatish Balay     a    = Aloc->a;
10759566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(bs, &rvals));
107657b952d6SSatish Balay 
107757b952d6SSatish Balay     for (i = 0; i < mbs; i++) {
1078899cda47SBarry Smith       rvals[0] = bs * (baij->rstartbs + i);
107926fbe8dcSKarl Rupp       for (j = 1; j < bs; j++) rvals[j] = rvals[j - 1] + 1;
108057b952d6SSatish Balay       for (j = ai[i]; j < ai[i + 1]; j++) {
1081899cda47SBarry Smith         col = (baij->cstartbs + aj[j]) * bs;
108257b952d6SSatish Balay         for (k = 0; k < bs; k++) {
10839566063dSJacob Faibussowitsch           PetscCall(MatSetValues_MPIBAIJ(A, bs, rvals, 1, &col, a, INSERT_VALUES));
10849371c9d4SSatish Balay           col++;
10859371c9d4SSatish Balay           a += bs;
108657b952d6SSatish Balay         }
108757b952d6SSatish Balay       }
108857b952d6SSatish Balay     }
108957b952d6SSatish Balay     /* copy over the B part */
109057b952d6SSatish Balay     Aloc = (Mat_SeqBAIJ *)baij->B->data;
10919371c9d4SSatish Balay     ai   = Aloc->i;
10929371c9d4SSatish Balay     aj   = Aloc->j;
10939371c9d4SSatish Balay     a    = Aloc->a;
109457b952d6SSatish Balay     for (i = 0; i < mbs; i++) {
1095899cda47SBarry Smith       rvals[0] = bs * (baij->rstartbs + i);
109626fbe8dcSKarl Rupp       for (j = 1; j < bs; j++) rvals[j] = rvals[j - 1] + 1;
109757b952d6SSatish Balay       for (j = ai[i]; j < ai[i + 1]; j++) {
109857b952d6SSatish Balay         col = baij->garray[aj[j]] * bs;
109957b952d6SSatish Balay         for (k = 0; k < bs; k++) {
11009566063dSJacob Faibussowitsch           PetscCall(MatSetValues_MPIBAIJ(A, bs, rvals, 1, &col, a, INSERT_VALUES));
11019371c9d4SSatish Balay           col++;
11029371c9d4SSatish Balay           a += bs;
110357b952d6SSatish Balay         }
110457b952d6SSatish Balay       }
110557b952d6SSatish Balay     }
11069566063dSJacob Faibussowitsch     PetscCall(PetscFree(rvals));
11079566063dSJacob Faibussowitsch     PetscCall(MatAssemblyBegin(A, MAT_FINAL_ASSEMBLY));
11089566063dSJacob Faibussowitsch     PetscCall(MatAssemblyEnd(A, MAT_FINAL_ASSEMBLY));
110955843e3eSBarry Smith     /*
111055843e3eSBarry Smith        Everyone has to call to draw the matrix since the graphics waits are
1111b0a32e0cSBarry Smith        synchronized across all processors that share the PetscDraw object
111255843e3eSBarry Smith     */
11139566063dSJacob Faibussowitsch     PetscCall(PetscViewerGetSubViewer(viewer, PETSC_COMM_SELF, &sviewer));
111423a3927dSBarry Smith     if (((PetscObject)mat)->name) PetscCall(PetscObjectGetName((PetscObject)mat, &matname));
1115dd400576SPatrick Sanan     if (rank == 0) {
1116f4f49eeaSPierre Jolivet       if (((PetscObject)mat)->name) PetscCall(PetscObjectSetName((PetscObject)((Mat_MPIBAIJ *)A->data)->A, matname));
1117f4f49eeaSPierre Jolivet       PetscCall(MatView_SeqBAIJ(((Mat_MPIBAIJ *)A->data)->A, sviewer));
111857b952d6SSatish Balay     }
11199566063dSJacob Faibussowitsch     PetscCall(PetscViewerRestoreSubViewer(viewer, PETSC_COMM_SELF, &sviewer));
11209566063dSJacob Faibussowitsch     PetscCall(MatDestroy(&A));
112157b952d6SSatish Balay   }
11223ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
112357b952d6SSatish Balay }
112457b952d6SSatish Balay 
1125618cc2edSLisandro Dalcin /* Used for both MPIBAIJ and MPISBAIJ matrices */
1126d71ae5a4SJacob Faibussowitsch PetscErrorCode MatView_MPIBAIJ_Binary(Mat mat, PetscViewer viewer)
1127d71ae5a4SJacob Faibussowitsch {
1128b51a4376SLisandro Dalcin   Mat_MPIBAIJ    *aij    = (Mat_MPIBAIJ *)mat->data;
1129b51a4376SLisandro Dalcin   Mat_SeqBAIJ    *A      = (Mat_SeqBAIJ *)aij->A->data;
1130b51a4376SLisandro Dalcin   Mat_SeqBAIJ    *B      = (Mat_SeqBAIJ *)aij->B->data;
1131b51a4376SLisandro Dalcin   const PetscInt *garray = aij->garray;
113217a3732bSBarry Smith   PetscInt        header[4], M, N, m, rs, cs, bs, cnt, i, j, ja, jb, k, l;
11336497c311SBarry Smith   PetscCount      nz, hnz;
1134b51a4376SLisandro Dalcin   PetscInt       *rowlens, *colidxs;
1135b51a4376SLisandro Dalcin   PetscScalar    *matvals;
113617a3732bSBarry Smith   PetscMPIInt     rank;
1137660746e0SBarry Smith 
1138660746e0SBarry Smith   PetscFunctionBegin;
11399566063dSJacob Faibussowitsch   PetscCall(PetscViewerSetUp(viewer));
1140b51a4376SLisandro Dalcin 
1141b51a4376SLisandro Dalcin   M  = mat->rmap->N;
1142b51a4376SLisandro Dalcin   N  = mat->cmap->N;
1143b51a4376SLisandro Dalcin   m  = mat->rmap->n;
1144b51a4376SLisandro Dalcin   rs = mat->rmap->rstart;
1145b51a4376SLisandro Dalcin   cs = mat->cmap->rstart;
1146b51a4376SLisandro Dalcin   bs = mat->rmap->bs;
1147b51a4376SLisandro Dalcin   nz = bs * bs * (A->nz + B->nz);
1148b51a4376SLisandro Dalcin 
1149b51a4376SLisandro Dalcin   /* write matrix header */
1150660746e0SBarry Smith   header[0] = MAT_FILE_CLASSID;
11519371c9d4SSatish Balay   header[1] = M;
11529371c9d4SSatish Balay   header[2] = N;
11536497c311SBarry Smith   PetscCallMPI(MPI_Reduce(&nz, &hnz, 1, MPIU_COUNT, MPI_SUM, 0, PetscObjectComm((PetscObject)mat)));
115417a3732bSBarry Smith   PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)mat), &rank));
115517a3732bSBarry Smith   if (rank == 0) PetscCall(PetscIntCast(hnz, &header[3]));
11569566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryWrite(viewer, header, 4, PETSC_INT));
1157660746e0SBarry Smith 
1158b51a4376SLisandro Dalcin   /* fill in and store row lengths */
11599566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(m, &rowlens));
1160b51a4376SLisandro Dalcin   for (cnt = 0, i = 0; i < A->mbs; i++)
11619371c9d4SSatish Balay     for (j = 0; j < bs; j++) rowlens[cnt++] = bs * (A->i[i + 1] - A->i[i] + B->i[i + 1] - B->i[i]);
11629566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryWriteAll(viewer, rowlens, m, rs, M, PETSC_INT));
11639566063dSJacob Faibussowitsch   PetscCall(PetscFree(rowlens));
1164660746e0SBarry Smith 
1165b51a4376SLisandro Dalcin   /* fill in and store column indices */
11669566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(nz, &colidxs));
1167b51a4376SLisandro Dalcin   for (cnt = 0, i = 0; i < A->mbs; i++) {
1168b51a4376SLisandro Dalcin     for (k = 0; k < bs; k++) {
1169b51a4376SLisandro Dalcin       for (jb = B->i[i]; jb < B->i[i + 1]; jb++) {
1170b51a4376SLisandro Dalcin         if (garray[B->j[jb]] > cs / bs) break;
11719371c9d4SSatish Balay         for (l = 0; l < bs; l++) colidxs[cnt++] = bs * garray[B->j[jb]] + l;
1172660746e0SBarry Smith       }
1173b51a4376SLisandro Dalcin       for (ja = A->i[i]; ja < A->i[i + 1]; ja++)
11749371c9d4SSatish Balay         for (l = 0; l < bs; l++) colidxs[cnt++] = bs * A->j[ja] + l + cs;
1175b51a4376SLisandro Dalcin       for (; jb < B->i[i + 1]; jb++)
11769371c9d4SSatish Balay         for (l = 0; l < bs; l++) colidxs[cnt++] = bs * garray[B->j[jb]] + l;
1177660746e0SBarry Smith     }
1178660746e0SBarry Smith   }
11796497c311SBarry Smith   PetscCheck(cnt == nz, PETSC_COMM_SELF, PETSC_ERR_LIB, "Internal PETSc error: cnt = %" PetscInt_FMT " nz = %" PetscCount_FMT, cnt, nz);
11809566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryWriteAll(viewer, colidxs, nz, PETSC_DECIDE, PETSC_DECIDE, PETSC_INT));
11819566063dSJacob Faibussowitsch   PetscCall(PetscFree(colidxs));
1182660746e0SBarry Smith 
1183b51a4376SLisandro Dalcin   /* fill in and store nonzero values */
11849566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(nz, &matvals));
1185b51a4376SLisandro Dalcin   for (cnt = 0, i = 0; i < A->mbs; i++) {
1186b51a4376SLisandro Dalcin     for (k = 0; k < bs; k++) {
1187b51a4376SLisandro Dalcin       for (jb = B->i[i]; jb < B->i[i + 1]; jb++) {
1188b51a4376SLisandro Dalcin         if (garray[B->j[jb]] > cs / bs) break;
11899371c9d4SSatish Balay         for (l = 0; l < bs; l++) matvals[cnt++] = B->a[bs * (bs * jb + l) + k];
1190660746e0SBarry Smith       }
1191b51a4376SLisandro Dalcin       for (ja = A->i[i]; ja < A->i[i + 1]; ja++)
11929371c9d4SSatish Balay         for (l = 0; l < bs; l++) matvals[cnt++] = A->a[bs * (bs * ja + l) + k];
1193b51a4376SLisandro Dalcin       for (; jb < B->i[i + 1]; jb++)
11949371c9d4SSatish Balay         for (l = 0; l < bs; l++) matvals[cnt++] = B->a[bs * (bs * jb + l) + k];
1195660746e0SBarry Smith     }
1196b51a4376SLisandro Dalcin   }
11979566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryWriteAll(viewer, matvals, nz, PETSC_DECIDE, PETSC_DECIDE, PETSC_SCALAR));
11989566063dSJacob Faibussowitsch   PetscCall(PetscFree(matvals));
1199660746e0SBarry Smith 
1200b51a4376SLisandro Dalcin   /* write block size option to the viewer's .info file */
12019566063dSJacob Faibussowitsch   PetscCall(MatView_Binary_BlockSizes(mat, viewer));
12023ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1203660746e0SBarry Smith }
1204660746e0SBarry Smith 
1205d71ae5a4SJacob Faibussowitsch PetscErrorCode MatView_MPIBAIJ(Mat mat, PetscViewer viewer)
1206d71ae5a4SJacob Faibussowitsch {
12079f196a02SMartin Diehl   PetscBool isascii, isdraw, issocket, isbinary;
120857b952d6SSatish Balay 
1209d64ed03dSBarry Smith   PetscFunctionBegin;
12109f196a02SMartin Diehl   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &isascii));
12119566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERDRAW, &isdraw));
12129566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERSOCKET, &issocket));
12139566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary));
1214ac530a7eSPierre Jolivet   if (isascii || isdraw || issocket) PetscCall(MatView_MPIBAIJ_ASCIIorDraworSocket(mat, viewer));
1215ac530a7eSPierre Jolivet   else if (isbinary) PetscCall(MatView_MPIBAIJ_Binary(mat, viewer));
12163ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
121757b952d6SSatish Balay }
121857b952d6SSatish Balay 
121966976f2fSJacob Faibussowitsch static PetscErrorCode MatMult_MPIBAIJ(Mat A, Vec xx, Vec yy)
1220d71ae5a4SJacob Faibussowitsch {
1221cee3aa6bSSatish Balay   Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data;
1222b24ad042SBarry Smith   PetscInt     nt;
1223cee3aa6bSSatish Balay 
1224d64ed03dSBarry Smith   PetscFunctionBegin;
12259566063dSJacob Faibussowitsch   PetscCall(VecGetLocalSize(xx, &nt));
12265f80ce2aSJacob Faibussowitsch   PetscCheck(nt == A->cmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Incompatible partition of A and xx");
12279566063dSJacob Faibussowitsch   PetscCall(VecGetLocalSize(yy, &nt));
1228da81f932SPierre Jolivet   PetscCheck(nt == A->rmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Incompatible partition of A and yy");
12299566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(a->Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD));
12309566063dSJacob Faibussowitsch   PetscCall((*a->A->ops->mult)(a->A, xx, yy));
12319566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(a->Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD));
12329566063dSJacob Faibussowitsch   PetscCall((*a->B->ops->multadd)(a->B, a->lvec, yy, yy));
12333ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1234cee3aa6bSSatish Balay }
1235cee3aa6bSSatish Balay 
123666976f2fSJacob Faibussowitsch static PetscErrorCode MatMultAdd_MPIBAIJ(Mat A, Vec xx, Vec yy, Vec zz)
1237d71ae5a4SJacob Faibussowitsch {
1238cee3aa6bSSatish Balay   Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data;
1239d64ed03dSBarry Smith 
1240d64ed03dSBarry Smith   PetscFunctionBegin;
12419566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(a->Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD));
12429566063dSJacob Faibussowitsch   PetscCall((*a->A->ops->multadd)(a->A, xx, yy, zz));
12439566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(a->Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD));
12449566063dSJacob Faibussowitsch   PetscCall((*a->B->ops->multadd)(a->B, a->lvec, zz, zz));
12453ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1246cee3aa6bSSatish Balay }
1247cee3aa6bSSatish Balay 
124866976f2fSJacob Faibussowitsch static PetscErrorCode MatMultTranspose_MPIBAIJ(Mat A, Vec xx, Vec yy)
1249d71ae5a4SJacob Faibussowitsch {
1250cee3aa6bSSatish Balay   Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data;
1251cee3aa6bSSatish Balay 
1252d64ed03dSBarry Smith   PetscFunctionBegin;
1253cee3aa6bSSatish Balay   /* do nondiagonal part */
12549566063dSJacob Faibussowitsch   PetscCall((*a->B->ops->multtranspose)(a->B, xx, a->lvec));
1255cee3aa6bSSatish Balay   /* do local part */
12569566063dSJacob Faibussowitsch   PetscCall((*a->A->ops->multtranspose)(a->A, xx, yy));
1257e4a140f6SJunchao Zhang   /* add partial results together */
12589566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(a->Mvctx, a->lvec, yy, ADD_VALUES, SCATTER_REVERSE));
12599566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(a->Mvctx, a->lvec, yy, ADD_VALUES, SCATTER_REVERSE));
12603ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1261cee3aa6bSSatish Balay }
1262cee3aa6bSSatish Balay 
126366976f2fSJacob Faibussowitsch static PetscErrorCode MatMultTransposeAdd_MPIBAIJ(Mat A, Vec xx, Vec yy, Vec zz)
1264d71ae5a4SJacob Faibussowitsch {
1265cee3aa6bSSatish Balay   Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data;
1266cee3aa6bSSatish Balay 
1267d64ed03dSBarry Smith   PetscFunctionBegin;
1268cee3aa6bSSatish Balay   /* do nondiagonal part */
12699566063dSJacob Faibussowitsch   PetscCall((*a->B->ops->multtranspose)(a->B, xx, a->lvec));
1270cee3aa6bSSatish Balay   /* do local part */
12719566063dSJacob Faibussowitsch   PetscCall((*a->A->ops->multtransposeadd)(a->A, xx, yy, zz));
1272e4a140f6SJunchao Zhang   /* add partial results together */
12739566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(a->Mvctx, a->lvec, zz, ADD_VALUES, SCATTER_REVERSE));
12749566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(a->Mvctx, a->lvec, zz, ADD_VALUES, SCATTER_REVERSE));
12753ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1276cee3aa6bSSatish Balay }
1277cee3aa6bSSatish Balay 
1278cee3aa6bSSatish Balay /*
1279cee3aa6bSSatish Balay   This only works correctly for square matrices where the subblock A->A is the
1280cee3aa6bSSatish Balay    diagonal block
1281cee3aa6bSSatish Balay */
128266976f2fSJacob Faibussowitsch static PetscErrorCode MatGetDiagonal_MPIBAIJ(Mat A, Vec v)
1283d71ae5a4SJacob Faibussowitsch {
1284d64ed03dSBarry Smith   PetscFunctionBegin;
12855f80ce2aSJacob Faibussowitsch   PetscCheck(A->rmap->N == A->cmap->N, PETSC_COMM_SELF, PETSC_ERR_SUP, "Supports only square matrix where A->A is diag block");
12869566063dSJacob Faibussowitsch   PetscCall(MatGetDiagonal(((Mat_MPIBAIJ *)A->data)->A, v));
12873ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1288cee3aa6bSSatish Balay }
1289cee3aa6bSSatish Balay 
129066976f2fSJacob Faibussowitsch static PetscErrorCode MatScale_MPIBAIJ(Mat A, PetscScalar aa)
1291d71ae5a4SJacob Faibussowitsch {
1292cee3aa6bSSatish Balay   Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data;
1293d64ed03dSBarry Smith 
1294d64ed03dSBarry Smith   PetscFunctionBegin;
12959566063dSJacob Faibussowitsch   PetscCall(MatScale(a->A, aa));
12969566063dSJacob Faibussowitsch   PetscCall(MatScale(a->B, aa));
12973ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1298cee3aa6bSSatish Balay }
1299026e39d0SSatish Balay 
1300523895eeSPierre Jolivet static PetscErrorCode MatGetRow_MPIBAIJ(Mat matin, PetscInt row, PetscInt *nz, PetscInt **idx, PetscScalar **v)
1301d71ae5a4SJacob Faibussowitsch {
1302acdf5bf4SSatish Balay   Mat_MPIBAIJ *mat = (Mat_MPIBAIJ *)matin->data;
130387828ca2SBarry Smith   PetscScalar *vworkA, *vworkB, **pvA, **pvB, *v_p;
1304d0f46423SBarry Smith   PetscInt     bs = matin->rmap->bs, bs2 = mat->bs2, i, *cworkA, *cworkB, **pcA, **pcB;
1305d0f46423SBarry Smith   PetscInt     nztot, nzA, nzB, lrow, brstart = matin->rmap->rstart, brend = matin->rmap->rend;
1306899cda47SBarry Smith   PetscInt    *cmap, *idx_p, cstart = mat->cstartbs;
1307acdf5bf4SSatish Balay 
1308d64ed03dSBarry Smith   PetscFunctionBegin;
13095f80ce2aSJacob Faibussowitsch   PetscCheck(row >= brstart && row < brend, PETSC_COMM_SELF, PETSC_ERR_SUP, "Only local rows");
13105f80ce2aSJacob Faibussowitsch   PetscCheck(!mat->getrowactive, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Already active");
1311acdf5bf4SSatish Balay   mat->getrowactive = PETSC_TRUE;
1312acdf5bf4SSatish Balay 
1313acdf5bf4SSatish Balay   if (!mat->rowvalues && (idx || v)) {
1314acdf5bf4SSatish Balay     /*
1315acdf5bf4SSatish Balay         allocate enough space to hold information from the longest row.
1316acdf5bf4SSatish Balay     */
1317acdf5bf4SSatish Balay     Mat_SeqBAIJ *Aa = (Mat_SeqBAIJ *)mat->A->data, *Ba = (Mat_SeqBAIJ *)mat->B->data;
1318b24ad042SBarry Smith     PetscInt     max = 1, mbs = mat->mbs, tmp;
1319bd16c2feSSatish Balay     for (i = 0; i < mbs; i++) {
1320acdf5bf4SSatish Balay       tmp = Aa->i[i + 1] - Aa->i[i] + Ba->i[i + 1] - Ba->i[i];
132126fbe8dcSKarl Rupp       if (max < tmp) max = tmp;
1322acdf5bf4SSatish Balay     }
13239566063dSJacob Faibussowitsch     PetscCall(PetscMalloc2(max * bs2, &mat->rowvalues, max * bs2, &mat->rowindices));
1324acdf5bf4SSatish Balay   }
1325d9d09a02SSatish Balay   lrow = row - brstart;
1326acdf5bf4SSatish Balay 
13279371c9d4SSatish Balay   pvA = &vworkA;
13289371c9d4SSatish Balay   pcA = &cworkA;
13299371c9d4SSatish Balay   pvB = &vworkB;
13309371c9d4SSatish Balay   pcB = &cworkB;
13319371c9d4SSatish Balay   if (!v) {
13329371c9d4SSatish Balay     pvA = NULL;
13339371c9d4SSatish Balay     pvB = NULL;
13349371c9d4SSatish Balay   }
13359371c9d4SSatish Balay   if (!idx) {
13369371c9d4SSatish Balay     pcA = NULL;
13379371c9d4SSatish Balay     if (!v) pcB = NULL;
13389371c9d4SSatish Balay   }
13399566063dSJacob Faibussowitsch   PetscCall((*mat->A->ops->getrow)(mat->A, lrow, &nzA, pcA, pvA));
13409566063dSJacob Faibussowitsch   PetscCall((*mat->B->ops->getrow)(mat->B, lrow, &nzB, pcB, pvB));
1341acdf5bf4SSatish Balay   nztot = nzA + nzB;
1342acdf5bf4SSatish Balay 
1343acdf5bf4SSatish Balay   cmap = mat->garray;
1344acdf5bf4SSatish Balay   if (v || idx) {
1345acdf5bf4SSatish Balay     if (nztot) {
1346acdf5bf4SSatish Balay       /* Sort by increasing column numbers, assuming A and B already sorted */
1347b24ad042SBarry Smith       PetscInt imark = -1;
1348acdf5bf4SSatish Balay       if (v) {
1349acdf5bf4SSatish Balay         *v = v_p = mat->rowvalues;
1350acdf5bf4SSatish Balay         for (i = 0; i < nzB; i++) {
1351d9d09a02SSatish Balay           if (cmap[cworkB[i] / bs] < cstart) v_p[i] = vworkB[i];
1352acdf5bf4SSatish Balay           else break;
1353acdf5bf4SSatish Balay         }
1354acdf5bf4SSatish Balay         imark = i;
1355acdf5bf4SSatish Balay         for (i = 0; i < nzA; i++) v_p[imark + i] = vworkA[i];
1356acdf5bf4SSatish Balay         for (i = imark; i < nzB; i++) v_p[nzA + i] = vworkB[i];
1357acdf5bf4SSatish Balay       }
1358acdf5bf4SSatish Balay       if (idx) {
1359acdf5bf4SSatish Balay         *idx = idx_p = mat->rowindices;
1360acdf5bf4SSatish Balay         if (imark > -1) {
1361ad540459SPierre Jolivet           for (i = 0; i < imark; i++) idx_p[i] = cmap[cworkB[i] / bs] * bs + cworkB[i] % bs;
1362acdf5bf4SSatish Balay         } else {
1363acdf5bf4SSatish Balay           for (i = 0; i < nzB; i++) {
136426fbe8dcSKarl Rupp             if (cmap[cworkB[i] / bs] < cstart) idx_p[i] = cmap[cworkB[i] / bs] * bs + cworkB[i] % bs;
1365acdf5bf4SSatish Balay             else break;
1366acdf5bf4SSatish Balay           }
1367acdf5bf4SSatish Balay           imark = i;
1368acdf5bf4SSatish Balay         }
1369d9d09a02SSatish Balay         for (i = 0; i < nzA; i++) idx_p[imark + i] = cstart * bs + cworkA[i];
1370d9d09a02SSatish Balay         for (i = imark; i < nzB; i++) idx_p[nzA + i] = cmap[cworkB[i] / bs] * bs + cworkB[i] % bs;
1371acdf5bf4SSatish Balay       }
1372d64ed03dSBarry Smith     } else {
1373f4259b30SLisandro Dalcin       if (idx) *idx = NULL;
1374f4259b30SLisandro Dalcin       if (v) *v = NULL;
1375d212a18eSSatish Balay     }
1376acdf5bf4SSatish Balay   }
1377acdf5bf4SSatish Balay   *nz = nztot;
13789566063dSJacob Faibussowitsch   PetscCall((*mat->A->ops->restorerow)(mat->A, lrow, &nzA, pcA, pvA));
13799566063dSJacob Faibussowitsch   PetscCall((*mat->B->ops->restorerow)(mat->B, lrow, &nzB, pcB, pvB));
13803ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1381acdf5bf4SSatish Balay }
1382acdf5bf4SSatish Balay 
1383523895eeSPierre Jolivet static PetscErrorCode MatRestoreRow_MPIBAIJ(Mat mat, PetscInt row, PetscInt *nz, PetscInt **idx, PetscScalar **v)
1384d71ae5a4SJacob Faibussowitsch {
1385acdf5bf4SSatish Balay   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data;
1386d64ed03dSBarry Smith 
1387d64ed03dSBarry Smith   PetscFunctionBegin;
13885f80ce2aSJacob Faibussowitsch   PetscCheck(baij->getrowactive, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "MatGetRow not called");
1389acdf5bf4SSatish Balay   baij->getrowactive = PETSC_FALSE;
13903ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1391acdf5bf4SSatish Balay }
1392acdf5bf4SSatish Balay 
139366976f2fSJacob Faibussowitsch static PetscErrorCode MatZeroEntries_MPIBAIJ(Mat A)
1394d71ae5a4SJacob Faibussowitsch {
139558667388SSatish Balay   Mat_MPIBAIJ *l = (Mat_MPIBAIJ *)A->data;
1396d64ed03dSBarry Smith 
1397d64ed03dSBarry Smith   PetscFunctionBegin;
13989566063dSJacob Faibussowitsch   PetscCall(MatZeroEntries(l->A));
13999566063dSJacob Faibussowitsch   PetscCall(MatZeroEntries(l->B));
14003ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
140158667388SSatish Balay }
14020ac07820SSatish Balay 
140366976f2fSJacob Faibussowitsch static PetscErrorCode MatGetInfo_MPIBAIJ(Mat matin, MatInfoType flag, MatInfo *info)
1404d71ae5a4SJacob Faibussowitsch {
14054e220ebcSLois Curfman McInnes   Mat_MPIBAIJ   *a = (Mat_MPIBAIJ *)matin->data;
14064e220ebcSLois Curfman McInnes   Mat            A = a->A, B = a->B;
14073966268fSBarry Smith   PetscLogDouble isend[5], irecv[5];
14080ac07820SSatish Balay 
1409d64ed03dSBarry Smith   PetscFunctionBegin;
1410d0f46423SBarry Smith   info->block_size = (PetscReal)matin->rmap->bs;
141126fbe8dcSKarl Rupp 
14129566063dSJacob Faibussowitsch   PetscCall(MatGetInfo(A, MAT_LOCAL, info));
141326fbe8dcSKarl Rupp 
14149371c9d4SSatish Balay   isend[0] = info->nz_used;
14159371c9d4SSatish Balay   isend[1] = info->nz_allocated;
14169371c9d4SSatish Balay   isend[2] = info->nz_unneeded;
14179371c9d4SSatish Balay   isend[3] = info->memory;
14189371c9d4SSatish Balay   isend[4] = info->mallocs;
141926fbe8dcSKarl Rupp 
14209566063dSJacob Faibussowitsch   PetscCall(MatGetInfo(B, MAT_LOCAL, info));
142126fbe8dcSKarl Rupp 
14229371c9d4SSatish Balay   isend[0] += info->nz_used;
14239371c9d4SSatish Balay   isend[1] += info->nz_allocated;
14249371c9d4SSatish Balay   isend[2] += info->nz_unneeded;
14259371c9d4SSatish Balay   isend[3] += info->memory;
14269371c9d4SSatish Balay   isend[4] += info->mallocs;
142726fbe8dcSKarl Rupp 
14280ac07820SSatish Balay   if (flag == MAT_LOCAL) {
14294e220ebcSLois Curfman McInnes     info->nz_used      = isend[0];
14304e220ebcSLois Curfman McInnes     info->nz_allocated = isend[1];
14314e220ebcSLois Curfman McInnes     info->nz_unneeded  = isend[2];
14324e220ebcSLois Curfman McInnes     info->memory       = isend[3];
14334e220ebcSLois Curfman McInnes     info->mallocs      = isend[4];
14340ac07820SSatish Balay   } else if (flag == MAT_GLOBAL_MAX) {
1435462c564dSBarry Smith     PetscCallMPI(MPIU_Allreduce(isend, irecv, 5, MPIU_PETSCLOGDOUBLE, MPI_MAX, PetscObjectComm((PetscObject)matin)));
143626fbe8dcSKarl Rupp 
14374e220ebcSLois Curfman McInnes     info->nz_used      = irecv[0];
14384e220ebcSLois Curfman McInnes     info->nz_allocated = irecv[1];
14394e220ebcSLois Curfman McInnes     info->nz_unneeded  = irecv[2];
14404e220ebcSLois Curfman McInnes     info->memory       = irecv[3];
14414e220ebcSLois Curfman McInnes     info->mallocs      = irecv[4];
14420ac07820SSatish Balay   } else if (flag == MAT_GLOBAL_SUM) {
1443462c564dSBarry Smith     PetscCallMPI(MPIU_Allreduce(isend, irecv, 5, MPIU_PETSCLOGDOUBLE, MPI_SUM, PetscObjectComm((PetscObject)matin)));
144426fbe8dcSKarl Rupp 
14454e220ebcSLois Curfman McInnes     info->nz_used      = irecv[0];
14464e220ebcSLois Curfman McInnes     info->nz_allocated = irecv[1];
14474e220ebcSLois Curfman McInnes     info->nz_unneeded  = irecv[2];
14484e220ebcSLois Curfman McInnes     info->memory       = irecv[3];
14494e220ebcSLois Curfman McInnes     info->mallocs      = irecv[4];
145098921bdaSJacob Faibussowitsch   } else SETERRQ(PetscObjectComm((PetscObject)matin), PETSC_ERR_ARG_WRONG, "Unknown MatInfoType argument %d", (int)flag);
14514e220ebcSLois Curfman McInnes   info->fill_ratio_given  = 0; /* no parallel LU/ILU/Cholesky */
14524e220ebcSLois Curfman McInnes   info->fill_ratio_needed = 0;
14534e220ebcSLois Curfman McInnes   info->factor_mallocs    = 0;
14543ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
14550ac07820SSatish Balay }
14560ac07820SSatish Balay 
145766976f2fSJacob Faibussowitsch static PetscErrorCode MatSetOption_MPIBAIJ(Mat A, MatOption op, PetscBool flg)
1458d71ae5a4SJacob Faibussowitsch {
145958667388SSatish Balay   Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data;
146058667388SSatish Balay 
1461d64ed03dSBarry Smith   PetscFunctionBegin;
146212c028f9SKris Buschelman   switch (op) {
1463512a5fc5SBarry Smith   case MAT_NEW_NONZERO_LOCATIONS:
146412c028f9SKris Buschelman   case MAT_NEW_NONZERO_ALLOCATION_ERR:
146528b2fa4aSMatthew Knepley   case MAT_UNUSED_NONZERO_LOCATION_ERR:
1466a9817697SBarry Smith   case MAT_KEEP_NONZERO_PATTERN:
146712c028f9SKris Buschelman   case MAT_NEW_NONZERO_LOCATION_ERR:
146843674050SBarry Smith     MatCheckPreallocated(A, 1);
14699566063dSJacob Faibussowitsch     PetscCall(MatSetOption(a->A, op, flg));
14709566063dSJacob Faibussowitsch     PetscCall(MatSetOption(a->B, op, flg));
147112c028f9SKris Buschelman     break;
147212c028f9SKris Buschelman   case MAT_ROW_ORIENTED:
147343674050SBarry Smith     MatCheckPreallocated(A, 1);
14744e0d8c25SBarry Smith     a->roworiented = flg;
147526fbe8dcSKarl Rupp 
14769566063dSJacob Faibussowitsch     PetscCall(MatSetOption(a->A, op, flg));
14779566063dSJacob Faibussowitsch     PetscCall(MatSetOption(a->B, op, flg));
147812c028f9SKris Buschelman     break;
1479d71ae5a4SJacob Faibussowitsch   case MAT_IGNORE_OFF_PROC_ENTRIES:
1480d71ae5a4SJacob Faibussowitsch     a->donotstash = flg;
1481d71ae5a4SJacob Faibussowitsch     break;
148212c028f9SKris Buschelman   case MAT_USE_HASH_TABLE:
14834e0d8c25SBarry Smith     a->ht_flag = flg;
1484abf3b562SBarry Smith     a->ht_fact = 1.39;
148512c028f9SKris Buschelman     break;
148677e54ba9SKris Buschelman   case MAT_SYMMETRIC:
148777e54ba9SKris Buschelman   case MAT_STRUCTURALLY_SYMMETRIC:
14882188ac68SBarry Smith   case MAT_HERMITIAN:
14892188ac68SBarry Smith   case MAT_SYMMETRY_ETERNAL:
1490b94d7dedSBarry Smith   case MAT_STRUCTURAL_SYMMETRY_ETERNAL:
1491b94d7dedSBarry Smith   case MAT_SPD_ETERNAL:
1492b94d7dedSBarry Smith     /* if the diagonal matrix is square it inherits some of the properties above */
14939725ddffSPierre Jolivet     if (a->A && A->rmap->n == A->cmap->n) PetscCall(MatSetOption(a->A, op, flg));
149477e54ba9SKris Buschelman     break;
1495d71ae5a4SJacob Faibussowitsch   default:
1496888c827cSStefano Zampini     break;
1497d64ed03dSBarry Smith   }
14983ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
149958667388SSatish Balay }
150058667388SSatish Balay 
150166976f2fSJacob Faibussowitsch static PetscErrorCode MatTranspose_MPIBAIJ(Mat A, MatReuse reuse, Mat *matout)
1502d71ae5a4SJacob Faibussowitsch {
15030ac07820SSatish Balay   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)A->data;
15040ac07820SSatish Balay   Mat_SeqBAIJ *Aloc;
15050ac07820SSatish Balay   Mat          B;
1506d0f46423SBarry Smith   PetscInt     M = A->rmap->N, N = A->cmap->N, *ai, *aj, i, *rvals, j, k, col;
1507d0f46423SBarry Smith   PetscInt     bs = A->rmap->bs, mbs = baij->mbs;
15083eda8832SBarry Smith   MatScalar   *a;
15090ac07820SSatish Balay 
1510d64ed03dSBarry Smith   PetscFunctionBegin;
15117fb60732SBarry Smith   if (reuse == MAT_REUSE_MATRIX) PetscCall(MatTransposeCheckNonzeroState_Private(A, *matout));
1512cf37664fSBarry Smith   if (reuse == MAT_INITIAL_MATRIX || reuse == MAT_INPLACE_MATRIX) {
15139566063dSJacob Faibussowitsch     PetscCall(MatCreate(PetscObjectComm((PetscObject)A), &B));
15149566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(B, A->cmap->n, A->rmap->n, N, M));
15159566063dSJacob Faibussowitsch     PetscCall(MatSetType(B, ((PetscObject)A)->type_name));
15162e72b8d9SBarry Smith     /* Do not know preallocation information, but must set block size */
15179566063dSJacob Faibussowitsch     PetscCall(MatMPIBAIJSetPreallocation(B, A->rmap->bs, PETSC_DECIDE, NULL, PETSC_DECIDE, NULL));
1518fc4dec0aSBarry Smith   } else {
1519fc4dec0aSBarry Smith     B = *matout;
1520fc4dec0aSBarry Smith   }
15210ac07820SSatish Balay 
15220ac07820SSatish Balay   /* copy over the A part */
15230ac07820SSatish Balay   Aloc = (Mat_SeqBAIJ *)baij->A->data;
15249371c9d4SSatish Balay   ai   = Aloc->i;
15259371c9d4SSatish Balay   aj   = Aloc->j;
15269371c9d4SSatish Balay   a    = Aloc->a;
15279566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(bs, &rvals));
15280ac07820SSatish Balay 
15290ac07820SSatish Balay   for (i = 0; i < mbs; i++) {
1530899cda47SBarry Smith     rvals[0] = bs * (baij->rstartbs + i);
153126fbe8dcSKarl Rupp     for (j = 1; j < bs; j++) rvals[j] = rvals[j - 1] + 1;
15320ac07820SSatish Balay     for (j = ai[i]; j < ai[i + 1]; j++) {
1533899cda47SBarry Smith       col = (baij->cstartbs + aj[j]) * bs;
15340ac07820SSatish Balay       for (k = 0; k < bs; k++) {
15359566063dSJacob Faibussowitsch         PetscCall(MatSetValues_MPIBAIJ(B, 1, &col, bs, rvals, a, INSERT_VALUES));
153626fbe8dcSKarl Rupp 
15379371c9d4SSatish Balay         col++;
15389371c9d4SSatish Balay         a += bs;
15390ac07820SSatish Balay       }
15400ac07820SSatish Balay     }
15410ac07820SSatish Balay   }
15420ac07820SSatish Balay   /* copy over the B part */
15430ac07820SSatish Balay   Aloc = (Mat_SeqBAIJ *)baij->B->data;
15449371c9d4SSatish Balay   ai   = Aloc->i;
15459371c9d4SSatish Balay   aj   = Aloc->j;
15469371c9d4SSatish Balay   a    = Aloc->a;
15470ac07820SSatish Balay   for (i = 0; i < mbs; i++) {
1548899cda47SBarry Smith     rvals[0] = bs * (baij->rstartbs + i);
154926fbe8dcSKarl Rupp     for (j = 1; j < bs; j++) rvals[j] = rvals[j - 1] + 1;
15500ac07820SSatish Balay     for (j = ai[i]; j < ai[i + 1]; j++) {
15510ac07820SSatish Balay       col = baij->garray[aj[j]] * bs;
15520ac07820SSatish Balay       for (k = 0; k < bs; k++) {
15539566063dSJacob Faibussowitsch         PetscCall(MatSetValues_MPIBAIJ(B, 1, &col, bs, rvals, a, INSERT_VALUES));
155426fbe8dcSKarl Rupp         col++;
155526fbe8dcSKarl Rupp         a += bs;
15560ac07820SSatish Balay       }
15570ac07820SSatish Balay     }
15580ac07820SSatish Balay   }
15599566063dSJacob Faibussowitsch   PetscCall(PetscFree(rvals));
15609566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY));
15619566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY));
15620ac07820SSatish Balay 
1563cf37664fSBarry Smith   if (reuse == MAT_INITIAL_MATRIX || reuse == MAT_REUSE_MATRIX) *matout = B;
156448a46eb9SPierre Jolivet   else PetscCall(MatHeaderMerge(A, &B));
15653ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
15660ac07820SSatish Balay }
15670e95ebc0SSatish Balay 
156866976f2fSJacob Faibussowitsch static PetscErrorCode MatDiagonalScale_MPIBAIJ(Mat mat, Vec ll, Vec rr)
1569d71ae5a4SJacob Faibussowitsch {
157036c4a09eSSatish Balay   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data;
157136c4a09eSSatish Balay   Mat          a = baij->A, b = baij->B;
1572b24ad042SBarry Smith   PetscInt     s1, s2, s3;
15730e95ebc0SSatish Balay 
1574d64ed03dSBarry Smith   PetscFunctionBegin;
15759566063dSJacob Faibussowitsch   PetscCall(MatGetLocalSize(mat, &s2, &s3));
157636c4a09eSSatish Balay   if (rr) {
15779566063dSJacob Faibussowitsch     PetscCall(VecGetLocalSize(rr, &s1));
15785f80ce2aSJacob Faibussowitsch     PetscCheck(s1 == s3, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "right vector non-conforming local size");
157936c4a09eSSatish Balay     /* Overlap communication with computation. */
15809566063dSJacob Faibussowitsch     PetscCall(VecScatterBegin(baij->Mvctx, rr, baij->lvec, INSERT_VALUES, SCATTER_FORWARD));
158136c4a09eSSatish Balay   }
15820e95ebc0SSatish Balay   if (ll) {
15839566063dSJacob Faibussowitsch     PetscCall(VecGetLocalSize(ll, &s1));
15845f80ce2aSJacob Faibussowitsch     PetscCheck(s1 == s2, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "left vector non-conforming local size");
1585dbbe0bcdSBarry Smith     PetscUseTypeMethod(b, diagonalscale, ll, NULL);
15860e95ebc0SSatish Balay   }
158736c4a09eSSatish Balay   /* scale  the diagonal block */
1588dbbe0bcdSBarry Smith   PetscUseTypeMethod(a, diagonalscale, ll, rr);
158936c4a09eSSatish Balay 
159036c4a09eSSatish Balay   if (rr) {
159136c4a09eSSatish Balay     /* Do a scatter end and then right scale the off-diagonal block */
15929566063dSJacob Faibussowitsch     PetscCall(VecScatterEnd(baij->Mvctx, rr, baij->lvec, INSERT_VALUES, SCATTER_FORWARD));
1593dbbe0bcdSBarry Smith     PetscUseTypeMethod(b, diagonalscale, NULL, baij->lvec);
159436c4a09eSSatish Balay   }
15953ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
15960e95ebc0SSatish Balay }
15970e95ebc0SSatish Balay 
159866976f2fSJacob Faibussowitsch static PetscErrorCode MatZeroRows_MPIBAIJ(Mat A, PetscInt N, const PetscInt rows[], PetscScalar diag, Vec x, Vec b)
1599d71ae5a4SJacob Faibussowitsch {
16000ac07820SSatish Balay   Mat_MPIBAIJ *l = (Mat_MPIBAIJ *)A->data;
160165a92638SMatthew G. Knepley   PetscInt    *lrows;
16026e520ac8SStefano Zampini   PetscInt     r, len;
160394342113SStefano Zampini   PetscBool    cong;
16040ac07820SSatish Balay 
1605d64ed03dSBarry Smith   PetscFunctionBegin;
16066e520ac8SStefano Zampini   /* get locally owned rows */
16079566063dSJacob Faibussowitsch   PetscCall(MatZeroRowsMapLocal_Private(A, N, rows, &len, &lrows));
1608dd8e379bSPierre Jolivet   /* fix right-hand side if needed */
160997b48c8fSBarry Smith   if (x && b) {
161065a92638SMatthew G. Knepley     const PetscScalar *xx;
161165a92638SMatthew G. Knepley     PetscScalar       *bb;
161265a92638SMatthew G. Knepley 
16139566063dSJacob Faibussowitsch     PetscCall(VecGetArrayRead(x, &xx));
16149566063dSJacob Faibussowitsch     PetscCall(VecGetArray(b, &bb));
161565a92638SMatthew G. Knepley     for (r = 0; r < len; ++r) bb[lrows[r]] = diag * xx[lrows[r]];
16169566063dSJacob Faibussowitsch     PetscCall(VecRestoreArrayRead(x, &xx));
16179566063dSJacob Faibussowitsch     PetscCall(VecRestoreArray(b, &bb));
161897b48c8fSBarry Smith   }
161997b48c8fSBarry Smith 
16200ac07820SSatish Balay   /* actually zap the local rows */
162172dacd9aSBarry Smith   /*
162272dacd9aSBarry Smith         Zero the required rows. If the "diagonal block" of the matrix
1623a8c7a070SBarry Smith      is square and the user wishes to set the diagonal we use separate
162472dacd9aSBarry Smith      code so that MatSetValues() is not called for each diagonal allocating
162572dacd9aSBarry Smith      new memory, thus calling lots of mallocs and slowing things down.
162672dacd9aSBarry Smith 
162772dacd9aSBarry Smith   */
16289c957beeSSatish Balay   /* must zero l->B before l->A because the (diag) case below may put values into l->B*/
16299566063dSJacob Faibussowitsch   PetscCall(MatZeroRows_SeqBAIJ(l->B, len, lrows, 0.0, NULL, NULL));
16309566063dSJacob Faibussowitsch   PetscCall(MatHasCongruentLayouts(A, &cong));
163194342113SStefano Zampini   if ((diag != 0.0) && cong) {
16329566063dSJacob Faibussowitsch     PetscCall(MatZeroRows_SeqBAIJ(l->A, len, lrows, diag, NULL, NULL));
1633f4df32b1SMatthew Knepley   } else if (diag != 0.0) {
16349566063dSJacob Faibussowitsch     PetscCall(MatZeroRows_SeqBAIJ(l->A, len, lrows, 0.0, NULL, NULL));
163500045ab3SPierre Jolivet     PetscCheck(!((Mat_SeqBAIJ *)l->A->data)->nonew, PETSC_COMM_SELF, PETSC_ERR_SUP, "MatZeroRows() on rectangular matrices cannot be used with the Mat options MAT_NEW_NONZERO_LOCATIONS, MAT_NEW_NONZERO_LOCATION_ERR, and MAT_NEW_NONZERO_ALLOCATION_ERR");
163665a92638SMatthew G. Knepley     for (r = 0; r < len; ++r) {
163765a92638SMatthew G. Knepley       const PetscInt row = lrows[r] + A->rmap->rstart;
16389566063dSJacob Faibussowitsch       PetscCall(MatSetValues(A, 1, &row, 1, &row, &diag, INSERT_VALUES));
1639a07cd24cSSatish Balay     }
16409566063dSJacob Faibussowitsch     PetscCall(MatAssemblyBegin(A, MAT_FINAL_ASSEMBLY));
16419566063dSJacob Faibussowitsch     PetscCall(MatAssemblyEnd(A, MAT_FINAL_ASSEMBLY));
16429c957beeSSatish Balay   } else {
16439566063dSJacob Faibussowitsch     PetscCall(MatZeroRows_SeqBAIJ(l->A, len, lrows, 0.0, NULL, NULL));
1644a07cd24cSSatish Balay   }
16459566063dSJacob Faibussowitsch   PetscCall(PetscFree(lrows));
16464f9cfa9eSBarry Smith 
16474f9cfa9eSBarry Smith   /* only change matrix nonzero state if pattern was allowed to be changed */
1648f4f49eeaSPierre Jolivet   if (!((Mat_SeqBAIJ *)l->A->data)->keepnonzeropattern || !((Mat_SeqBAIJ *)l->A->data)->nonew) {
1649e56f5c9eSBarry Smith     PetscObjectState state = l->A->nonzerostate + l->B->nonzerostate;
1650462c564dSBarry Smith     PetscCallMPI(MPIU_Allreduce(&state, &A->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)A)));
1651e56f5c9eSBarry Smith   }
16523ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
16530ac07820SSatish Balay }
165472dacd9aSBarry Smith 
165566976f2fSJacob Faibussowitsch static PetscErrorCode MatZeroRowsColumns_MPIBAIJ(Mat A, PetscInt N, const PetscInt rows[], PetscScalar diag, Vec x, Vec b)
1656d71ae5a4SJacob Faibussowitsch {
16576f0a72daSMatthew G. Knepley   Mat_MPIBAIJ       *l = (Mat_MPIBAIJ *)A->data;
16586497c311SBarry Smith   PetscMPIInt        n, p = 0;
1659131c27b5Sprj-   PetscInt           i, j, k, r, len = 0, row, col, count;
16606f0a72daSMatthew G. Knepley   PetscInt          *lrows, *owners = A->rmap->range;
16616f0a72daSMatthew G. Knepley   PetscSFNode       *rrows;
16626f0a72daSMatthew G. Knepley   PetscSF            sf;
16636f0a72daSMatthew G. Knepley   const PetscScalar *xx;
16646f0a72daSMatthew G. Knepley   PetscScalar       *bb, *mask;
16656f0a72daSMatthew G. Knepley   Vec                xmask, lmask;
16666f0a72daSMatthew G. Knepley   Mat_SeqBAIJ       *baij = (Mat_SeqBAIJ *)l->B->data;
16676f0a72daSMatthew G. Knepley   PetscInt           bs = A->rmap->bs, bs2 = baij->bs2;
16686f0a72daSMatthew G. Knepley   PetscScalar       *aa;
16696f0a72daSMatthew G. Knepley 
16706f0a72daSMatthew G. Knepley   PetscFunctionBegin;
16716497c311SBarry Smith   PetscCall(PetscMPIIntCast(A->rmap->n, &n));
16726f0a72daSMatthew G. Knepley   /* Create SF where leaves are input rows and roots are owned rows */
16739566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(n, &lrows));
16746f0a72daSMatthew G. Knepley   for (r = 0; r < n; ++r) lrows[r] = -1;
16759566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(N, &rrows));
16766f0a72daSMatthew G. Knepley   for (r = 0; r < N; ++r) {
16776f0a72daSMatthew G. Knepley     const PetscInt idx = rows[r];
16785f80ce2aSJacob Faibussowitsch     PetscCheck(idx >= 0 && A->rmap->N > idx, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row %" PetscInt_FMT " out of range [0,%" PetscInt_FMT ")", idx, A->rmap->N);
16795ba17502SJed Brown     if (idx < owners[p] || owners[p + 1] <= idx) { /* short-circuit the search if the last p owns this row too */
16809566063dSJacob Faibussowitsch       PetscCall(PetscLayoutFindOwner(A->rmap, idx, &p));
16815ba17502SJed Brown     }
16826f0a72daSMatthew G. Knepley     rrows[r].rank  = p;
16836f0a72daSMatthew G. Knepley     rrows[r].index = rows[r] - owners[p];
16846f0a72daSMatthew G. Knepley   }
16859566063dSJacob Faibussowitsch   PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)A), &sf));
16869566063dSJacob Faibussowitsch   PetscCall(PetscSFSetGraph(sf, n, N, NULL, PETSC_OWN_POINTER, rrows, PETSC_OWN_POINTER));
16876f0a72daSMatthew G. Knepley   /* Collect flags for rows to be zeroed */
16889566063dSJacob Faibussowitsch   PetscCall(PetscSFReduceBegin(sf, MPIU_INT, (PetscInt *)rows, lrows, MPI_LOR));
16899566063dSJacob Faibussowitsch   PetscCall(PetscSFReduceEnd(sf, MPIU_INT, (PetscInt *)rows, lrows, MPI_LOR));
16909566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&sf));
16916f0a72daSMatthew G. Knepley   /* Compress and put in row numbers */
16929371c9d4SSatish Balay   for (r = 0; r < n; ++r)
16939371c9d4SSatish Balay     if (lrows[r] >= 0) lrows[len++] = r;
16946f0a72daSMatthew G. Knepley   /* zero diagonal part of matrix */
16959566063dSJacob Faibussowitsch   PetscCall(MatZeroRowsColumns(l->A, len, lrows, diag, x, b));
16964cf0e950SBarry Smith   /* handle off-diagonal part of matrix */
16979566063dSJacob Faibussowitsch   PetscCall(MatCreateVecs(A, &xmask, NULL));
16989566063dSJacob Faibussowitsch   PetscCall(VecDuplicate(l->lvec, &lmask));
16999566063dSJacob Faibussowitsch   PetscCall(VecGetArray(xmask, &bb));
17006f0a72daSMatthew G. Knepley   for (i = 0; i < len; i++) bb[lrows[i]] = 1;
17019566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(xmask, &bb));
17029566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(l->Mvctx, xmask, lmask, ADD_VALUES, SCATTER_FORWARD));
17039566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(l->Mvctx, xmask, lmask, ADD_VALUES, SCATTER_FORWARD));
17049566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&xmask));
17056f0a72daSMatthew G. Knepley   if (x) {
17069566063dSJacob Faibussowitsch     PetscCall(VecScatterBegin(l->Mvctx, x, l->lvec, INSERT_VALUES, SCATTER_FORWARD));
17079566063dSJacob Faibussowitsch     PetscCall(VecScatterEnd(l->Mvctx, x, l->lvec, INSERT_VALUES, SCATTER_FORWARD));
17089566063dSJacob Faibussowitsch     PetscCall(VecGetArrayRead(l->lvec, &xx));
17099566063dSJacob Faibussowitsch     PetscCall(VecGetArray(b, &bb));
17106f0a72daSMatthew G. Knepley   }
17119566063dSJacob Faibussowitsch   PetscCall(VecGetArray(lmask, &mask));
17124cf0e950SBarry Smith   /* remove zeroed rows of off-diagonal matrix */
17136f0a72daSMatthew G. Knepley   for (i = 0; i < len; ++i) {
17146f0a72daSMatthew G. Knepley     row   = lrows[i];
17156f0a72daSMatthew G. Knepley     count = (baij->i[row / bs + 1] - baij->i[row / bs]) * bs;
1716835f2295SStefano Zampini     aa    = baij->a + baij->i[row / bs] * bs2 + (row % bs);
17176f0a72daSMatthew G. Knepley     for (k = 0; k < count; ++k) {
17186f0a72daSMatthew G. Knepley       aa[0] = 0.0;
17196f0a72daSMatthew G. Knepley       aa += bs;
17206f0a72daSMatthew G. Knepley     }
17216f0a72daSMatthew G. Knepley   }
17226f0a72daSMatthew G. Knepley   /* loop over all elements of off process part of matrix zeroing removed columns*/
17236f0a72daSMatthew G. Knepley   for (i = 0; i < l->B->rmap->N; ++i) {
17246f0a72daSMatthew G. Knepley     row = i / bs;
17256f0a72daSMatthew G. Knepley     for (j = baij->i[row]; j < baij->i[row + 1]; ++j) {
17266f0a72daSMatthew G. Knepley       for (k = 0; k < bs; ++k) {
17276f0a72daSMatthew G. Knepley         col = bs * baij->j[j] + k;
17286f0a72daSMatthew G. Knepley         if (PetscAbsScalar(mask[col])) {
1729835f2295SStefano Zampini           aa = baij->a + j * bs2 + (i % bs) + bs * k;
173089ae1891SBarry Smith           if (x) bb[i] -= aa[0] * xx[col];
17316f0a72daSMatthew G. Knepley           aa[0] = 0.0;
17326f0a72daSMatthew G. Knepley         }
17336f0a72daSMatthew G. Knepley       }
17346f0a72daSMatthew G. Knepley     }
17356f0a72daSMatthew G. Knepley   }
17366f0a72daSMatthew G. Knepley   if (x) {
17379566063dSJacob Faibussowitsch     PetscCall(VecRestoreArray(b, &bb));
17389566063dSJacob Faibussowitsch     PetscCall(VecRestoreArrayRead(l->lvec, &xx));
17396f0a72daSMatthew G. Knepley   }
17409566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(lmask, &mask));
17419566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&lmask));
17429566063dSJacob Faibussowitsch   PetscCall(PetscFree(lrows));
17434f9cfa9eSBarry Smith 
17444f9cfa9eSBarry Smith   /* only change matrix nonzero state if pattern was allowed to be changed */
1745f4f49eeaSPierre Jolivet   if (!((Mat_SeqBAIJ *)l->A->data)->nonew) {
17464f9cfa9eSBarry Smith     PetscObjectState state = l->A->nonzerostate + l->B->nonzerostate;
1747462c564dSBarry Smith     PetscCallMPI(MPIU_Allreduce(&state, &A->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)A)));
17484f9cfa9eSBarry Smith   }
17493ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
17506f0a72daSMatthew G. Knepley }
17516f0a72daSMatthew G. Knepley 
175266976f2fSJacob Faibussowitsch static PetscErrorCode MatSetUnfactored_MPIBAIJ(Mat A)
1753d71ae5a4SJacob Faibussowitsch {
1754bb5a7306SBarry Smith   Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data;
1755d64ed03dSBarry Smith 
1756d64ed03dSBarry Smith   PetscFunctionBegin;
17579566063dSJacob Faibussowitsch   PetscCall(MatSetUnfactored(a->A));
17583ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1759bb5a7306SBarry Smith }
1760bb5a7306SBarry Smith 
17616849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIBAIJ(Mat, MatDuplicateOption, Mat *);
17620ac07820SSatish Balay 
176366976f2fSJacob Faibussowitsch static PetscErrorCode MatEqual_MPIBAIJ(Mat A, Mat B, PetscBool *flag)
1764d71ae5a4SJacob Faibussowitsch {
17657fc3c18eSBarry Smith   Mat_MPIBAIJ *matB = (Mat_MPIBAIJ *)B->data, *matA = (Mat_MPIBAIJ *)A->data;
17667fc3c18eSBarry Smith   Mat          a, b, c, d;
1767ace3abfcSBarry Smith   PetscBool    flg;
17687fc3c18eSBarry Smith 
17697fc3c18eSBarry Smith   PetscFunctionBegin;
17709371c9d4SSatish Balay   a = matA->A;
17719371c9d4SSatish Balay   b = matA->B;
17729371c9d4SSatish Balay   c = matB->A;
17739371c9d4SSatish Balay   d = matB->B;
17747fc3c18eSBarry Smith 
17759566063dSJacob Faibussowitsch   PetscCall(MatEqual(a, c, &flg));
177648a46eb9SPierre Jolivet   if (flg) PetscCall(MatEqual(b, d, &flg));
17775440e5dcSBarry Smith   PetscCallMPI(MPIU_Allreduce(&flg, flag, 1, MPI_C_BOOL, MPI_LAND, PetscObjectComm((PetscObject)A)));
17783ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
17797fc3c18eSBarry Smith }
17807fc3c18eSBarry Smith 
178166976f2fSJacob Faibussowitsch static PetscErrorCode MatCopy_MPIBAIJ(Mat A, Mat B, MatStructure str)
1782d71ae5a4SJacob Faibussowitsch {
17833c896bc6SHong Zhang   Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data;
17843c896bc6SHong Zhang   Mat_MPIBAIJ *b = (Mat_MPIBAIJ *)B->data;
17853c896bc6SHong Zhang 
17863c896bc6SHong Zhang   PetscFunctionBegin;
17873c896bc6SHong Zhang   /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */
17883c896bc6SHong Zhang   if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) {
17899566063dSJacob Faibussowitsch     PetscCall(MatCopy_Basic(A, B, str));
17903c896bc6SHong Zhang   } else {
17919566063dSJacob Faibussowitsch     PetscCall(MatCopy(a->A, b->A, str));
17929566063dSJacob Faibussowitsch     PetscCall(MatCopy(a->B, b->B, str));
17933c896bc6SHong Zhang   }
17949566063dSJacob Faibussowitsch   PetscCall(PetscObjectStateIncrease((PetscObject)B));
17953ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
17963c896bc6SHong Zhang }
1797273d9f13SBarry Smith 
1798d71ae5a4SJacob Faibussowitsch PetscErrorCode MatAXPYGetPreallocation_MPIBAIJ(Mat Y, const PetscInt *yltog, Mat X, const PetscInt *xltog, PetscInt *nnz)
1799d71ae5a4SJacob Faibussowitsch {
1800001ddc4fSHong Zhang   PetscInt     bs = Y->rmap->bs, m = Y->rmap->N / bs;
18014de5dceeSHong Zhang   Mat_SeqBAIJ *x = (Mat_SeqBAIJ *)X->data;
18024de5dceeSHong Zhang   Mat_SeqBAIJ *y = (Mat_SeqBAIJ *)Y->data;
18034de5dceeSHong Zhang 
18044de5dceeSHong Zhang   PetscFunctionBegin;
18059566063dSJacob Faibussowitsch   PetscCall(MatAXPYGetPreallocation_MPIX_private(m, x->i, x->j, xltog, y->i, y->j, yltog, nnz));
18063ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
18074de5dceeSHong Zhang }
18084de5dceeSHong Zhang 
180966976f2fSJacob Faibussowitsch static PetscErrorCode MatAXPY_MPIBAIJ(Mat Y, PetscScalar a, Mat X, MatStructure str)
1810d71ae5a4SJacob Faibussowitsch {
18114fe895cdSHong Zhang   Mat_MPIBAIJ *xx = (Mat_MPIBAIJ *)X->data, *yy = (Mat_MPIBAIJ *)Y->data;
18124fe895cdSHong Zhang   PetscBLASInt bnz, one                         = 1;
18134fe895cdSHong Zhang   Mat_SeqBAIJ *x, *y;
1814b31f67cfSBarry Smith   PetscInt     bs2 = Y->rmap->bs * Y->rmap->bs;
18154fe895cdSHong Zhang 
18164fe895cdSHong Zhang   PetscFunctionBegin;
18174fe895cdSHong Zhang   if (str == SAME_NONZERO_PATTERN) {
18184fe895cdSHong Zhang     PetscScalar alpha = a;
18194fe895cdSHong Zhang     x                 = (Mat_SeqBAIJ *)xx->A->data;
18204fe895cdSHong Zhang     y                 = (Mat_SeqBAIJ *)yy->A->data;
18219566063dSJacob Faibussowitsch     PetscCall(PetscBLASIntCast(x->nz * bs2, &bnz));
1822792fecdfSBarry Smith     PetscCallBLAS("BLASaxpy", BLASaxpy_(&bnz, &alpha, x->a, &one, y->a, &one));
18234fe895cdSHong Zhang     x = (Mat_SeqBAIJ *)xx->B->data;
18244fe895cdSHong Zhang     y = (Mat_SeqBAIJ *)yy->B->data;
18259566063dSJacob Faibussowitsch     PetscCall(PetscBLASIntCast(x->nz * bs2, &bnz));
1826792fecdfSBarry Smith     PetscCallBLAS("BLASaxpy", BLASaxpy_(&bnz, &alpha, x->a, &one, y->a, &one));
18279566063dSJacob Faibussowitsch     PetscCall(PetscObjectStateIncrease((PetscObject)Y));
1828ab784542SHong Zhang   } else if (str == SUBSET_NONZERO_PATTERN) { /* nonzeros of X is a subset of Y's */
18299566063dSJacob Faibussowitsch     PetscCall(MatAXPY_Basic(Y, a, X, str));
18304fe895cdSHong Zhang   } else {
18314de5dceeSHong Zhang     Mat       B;
18324de5dceeSHong Zhang     PetscInt *nnz_d, *nnz_o, bs = Y->rmap->bs;
18339566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(yy->A->rmap->N, &nnz_d));
18349566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(yy->B->rmap->N, &nnz_o));
18359566063dSJacob Faibussowitsch     PetscCall(MatCreate(PetscObjectComm((PetscObject)Y), &B));
18369566063dSJacob Faibussowitsch     PetscCall(PetscObjectSetName((PetscObject)B, ((PetscObject)Y)->name));
18379566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(B, Y->rmap->n, Y->cmap->n, Y->rmap->N, Y->cmap->N));
18389566063dSJacob Faibussowitsch     PetscCall(MatSetBlockSizesFromMats(B, Y, Y));
18399566063dSJacob Faibussowitsch     PetscCall(MatSetType(B, MATMPIBAIJ));
18409566063dSJacob Faibussowitsch     PetscCall(MatAXPYGetPreallocation_SeqBAIJ(yy->A, xx->A, nnz_d));
18419566063dSJacob Faibussowitsch     PetscCall(MatAXPYGetPreallocation_MPIBAIJ(yy->B, yy->garray, xx->B, xx->garray, nnz_o));
18429566063dSJacob Faibussowitsch     PetscCall(MatMPIBAIJSetPreallocation(B, bs, 0, nnz_d, 0, nnz_o));
18434de5dceeSHong Zhang     /* MatAXPY_BasicWithPreallocation() for BAIJ matrix is much slower than AIJ, even for bs=1 ! */
18449566063dSJacob Faibussowitsch     PetscCall(MatAXPY_BasicWithPreallocation(B, Y, a, X, str));
18459566063dSJacob Faibussowitsch     PetscCall(MatHeaderMerge(Y, &B));
18469566063dSJacob Faibussowitsch     PetscCall(PetscFree(nnz_d));
18479566063dSJacob Faibussowitsch     PetscCall(PetscFree(nnz_o));
18484fe895cdSHong Zhang   }
18493ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
18504fe895cdSHong Zhang }
18514fe895cdSHong Zhang 
185266976f2fSJacob Faibussowitsch static PetscErrorCode MatConjugate_MPIBAIJ(Mat mat)
1853d71ae5a4SJacob Faibussowitsch {
18545f80ce2aSJacob Faibussowitsch   PetscFunctionBegin;
18555f80ce2aSJacob Faibussowitsch   if (PetscDefined(USE_COMPLEX)) {
18562726fb6dSPierre Jolivet     Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)mat->data;
18572726fb6dSPierre Jolivet 
18589566063dSJacob Faibussowitsch     PetscCall(MatConjugate_SeqBAIJ(a->A));
18599566063dSJacob Faibussowitsch     PetscCall(MatConjugate_SeqBAIJ(a->B));
18605f80ce2aSJacob Faibussowitsch   }
18613ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
18622726fb6dSPierre Jolivet }
18632726fb6dSPierre Jolivet 
186466976f2fSJacob Faibussowitsch static PetscErrorCode MatRealPart_MPIBAIJ(Mat A)
1865d71ae5a4SJacob Faibussowitsch {
186699cafbc1SBarry Smith   Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data;
186799cafbc1SBarry Smith 
186899cafbc1SBarry Smith   PetscFunctionBegin;
18699566063dSJacob Faibussowitsch   PetscCall(MatRealPart(a->A));
18709566063dSJacob Faibussowitsch   PetscCall(MatRealPart(a->B));
18713ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
187299cafbc1SBarry Smith }
187399cafbc1SBarry Smith 
187466976f2fSJacob Faibussowitsch static PetscErrorCode MatImaginaryPart_MPIBAIJ(Mat A)
1875d71ae5a4SJacob Faibussowitsch {
187699cafbc1SBarry Smith   Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data;
187799cafbc1SBarry Smith 
187899cafbc1SBarry Smith   PetscFunctionBegin;
18799566063dSJacob Faibussowitsch   PetscCall(MatImaginaryPart(a->A));
18809566063dSJacob Faibussowitsch   PetscCall(MatImaginaryPart(a->B));
18813ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
188299cafbc1SBarry Smith }
188399cafbc1SBarry Smith 
188466976f2fSJacob Faibussowitsch static PetscErrorCode MatCreateSubMatrix_MPIBAIJ(Mat mat, IS isrow, IS iscol, MatReuse call, Mat *newmat)
1885d71ae5a4SJacob Faibussowitsch {
18864aa3045dSJed Brown   IS       iscol_local;
18874aa3045dSJed Brown   PetscInt csize;
18884aa3045dSJed Brown 
18894aa3045dSJed Brown   PetscFunctionBegin;
18909566063dSJacob Faibussowitsch   PetscCall(ISGetLocalSize(iscol, &csize));
1891b79d0421SJed Brown   if (call == MAT_REUSE_MATRIX) {
18929566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)*newmat, "ISAllGather", (PetscObject *)&iscol_local));
18935f80ce2aSJacob Faibussowitsch     PetscCheck(iscol_local, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Submatrix passed in was not used before, cannot reuse");
1894b79d0421SJed Brown   } else {
18959566063dSJacob Faibussowitsch     PetscCall(ISAllGather(iscol, &iscol_local));
1896b79d0421SJed Brown   }
1897fdfbdca6SPierre Jolivet   PetscCall(MatCreateSubMatrix_MPIBAIJ_Private(mat, isrow, iscol_local, csize, call, newmat, PETSC_FALSE));
1898b79d0421SJed Brown   if (call == MAT_INITIAL_MATRIX) {
18999566063dSJacob Faibussowitsch     PetscCall(PetscObjectCompose((PetscObject)*newmat, "ISAllGather", (PetscObject)iscol_local));
19009566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&iscol_local));
1901b79d0421SJed Brown   }
19023ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
19034aa3045dSJed Brown }
190417df9f7cSHong Zhang 
190582094794SBarry Smith /*
190682094794SBarry Smith   Not great since it makes two copies of the submatrix, first an SeqBAIJ
190782094794SBarry Smith   in local and then by concatenating the local matrices the end result.
19087dae84e0SHong Zhang   Writing it directly would be much like MatCreateSubMatrices_MPIBAIJ().
19098f46ffcaSHong Zhang   This routine is used for BAIJ and SBAIJ matrices (unfortunate dependency).
191082094794SBarry Smith */
1911fdfbdca6SPierre Jolivet PetscErrorCode MatCreateSubMatrix_MPIBAIJ_Private(Mat mat, IS isrow, IS iscol, PetscInt csize, MatReuse call, Mat *newmat, PetscBool sym)
1912d71ae5a4SJacob Faibussowitsch {
191382094794SBarry Smith   PetscMPIInt  rank, size;
191482094794SBarry Smith   PetscInt     i, m, n, rstart, row, rend, nz, *cwork, j, bs;
1915c9ffca76SHong Zhang   PetscInt    *ii, *jj, nlocal, *dlens, *olens, dlen, olen, jend, mglobal;
191629dcf524SDmitry Karpeev   Mat          M, Mreuse;
191782094794SBarry Smith   MatScalar   *vwork, *aa;
1918ce94432eSBarry Smith   MPI_Comm     comm;
191929dcf524SDmitry Karpeev   IS           isrow_new, iscol_new;
192082094794SBarry Smith   Mat_SeqBAIJ *aij;
192182094794SBarry Smith 
192282094794SBarry Smith   PetscFunctionBegin;
19239566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)mat, &comm));
19249566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(comm, &rank));
19259566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
192629dcf524SDmitry Karpeev   /* The compression and expansion should be avoided. Doesn't point
192729dcf524SDmitry Karpeev      out errors, might change the indices, hence buggey */
19289566063dSJacob Faibussowitsch   PetscCall(ISCompressIndicesGeneral(mat->rmap->N, mat->rmap->n, mat->rmap->bs, 1, &isrow, &isrow_new));
1929864bd19bSPierre Jolivet   if (isrow == iscol) {
1930864bd19bSPierre Jolivet     iscol_new = isrow_new;
1931864bd19bSPierre Jolivet     PetscCall(PetscObjectReference((PetscObject)iscol_new));
1932864bd19bSPierre Jolivet   } else PetscCall(ISCompressIndicesGeneral(mat->cmap->N, mat->cmap->n, mat->cmap->bs, 1, &iscol, &iscol_new));
193382094794SBarry Smith 
193482094794SBarry Smith   if (call == MAT_REUSE_MATRIX) {
19359566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)*newmat, "SubMatrix", (PetscObject *)&Mreuse));
19365f80ce2aSJacob Faibussowitsch     PetscCheck(Mreuse, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Submatrix passed in was not used before, cannot reuse");
1937fdfbdca6SPierre Jolivet     PetscCall(MatCreateSubMatrices_MPIBAIJ_local(mat, 1, &isrow_new, &iscol_new, MAT_REUSE_MATRIX, &Mreuse, sym));
193882094794SBarry Smith   } else {
1939fdfbdca6SPierre Jolivet     PetscCall(MatCreateSubMatrices_MPIBAIJ_local(mat, 1, &isrow_new, &iscol_new, MAT_INITIAL_MATRIX, &Mreuse, sym));
194082094794SBarry Smith   }
19419566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&isrow_new));
19429566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&iscol_new));
194382094794SBarry Smith   /*
194482094794SBarry Smith       m - number of local rows
194582094794SBarry Smith       n - number of columns (same on all processors)
194682094794SBarry Smith       rstart - first row in new global matrix generated
194782094794SBarry Smith   */
19489566063dSJacob Faibussowitsch   PetscCall(MatGetBlockSize(mat, &bs));
19499566063dSJacob Faibussowitsch   PetscCall(MatGetSize(Mreuse, &m, &n));
195082094794SBarry Smith   m = m / bs;
195182094794SBarry Smith   n = n / bs;
195282094794SBarry Smith 
195382094794SBarry Smith   if (call == MAT_INITIAL_MATRIX) {
195457508eceSPierre Jolivet     aij = (Mat_SeqBAIJ *)Mreuse->data;
195582094794SBarry Smith     ii  = aij->i;
195682094794SBarry Smith     jj  = aij->j;
195782094794SBarry Smith 
195882094794SBarry Smith     /*
195982094794SBarry Smith         Determine the number of non-zeros in the diagonal and off-diagonal
196082094794SBarry Smith         portions of the matrix in order to do correct preallocation
196182094794SBarry Smith     */
196282094794SBarry Smith 
196382094794SBarry Smith     /* first get start and end of "diagonal" columns */
196482094794SBarry Smith     if (csize == PETSC_DECIDE) {
19659566063dSJacob Faibussowitsch       PetscCall(ISGetSize(isrow, &mglobal));
196682094794SBarry Smith       if (mglobal == n * bs) { /* square matrix */
196782094794SBarry Smith         nlocal = m;
196882094794SBarry Smith       } else {
196982094794SBarry Smith         nlocal = n / size + ((n % size) > rank);
197082094794SBarry Smith       }
197182094794SBarry Smith     } else {
197282094794SBarry Smith       nlocal = csize / bs;
197382094794SBarry Smith     }
19749566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Scan(&nlocal, &rend, 1, MPIU_INT, MPI_SUM, comm));
197582094794SBarry Smith     rstart = rend - nlocal;
1976aed4548fSBarry Smith     PetscCheck(rank != size - 1 || rend == n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Local column sizes %" PetscInt_FMT " do not add up to total number of columns %" PetscInt_FMT, rend, n);
197782094794SBarry Smith 
197882094794SBarry Smith     /* next, compute all the lengths */
19799566063dSJacob Faibussowitsch     PetscCall(PetscMalloc2(m + 1, &dlens, m + 1, &olens));
198082094794SBarry Smith     for (i = 0; i < m; i++) {
198182094794SBarry Smith       jend = ii[i + 1] - ii[i];
198282094794SBarry Smith       olen = 0;
198382094794SBarry Smith       dlen = 0;
198482094794SBarry Smith       for (j = 0; j < jend; j++) {
198582094794SBarry Smith         if (*jj < rstart || *jj >= rend) olen++;
198682094794SBarry Smith         else dlen++;
198782094794SBarry Smith         jj++;
198882094794SBarry Smith       }
198982094794SBarry Smith       olens[i] = olen;
199082094794SBarry Smith       dlens[i] = dlen;
199182094794SBarry Smith     }
19929566063dSJacob Faibussowitsch     PetscCall(MatCreate(comm, &M));
19939566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(M, bs * m, bs * nlocal, PETSC_DECIDE, bs * n));
1994fdfbdca6SPierre Jolivet     PetscCall(MatSetType(M, sym ? ((PetscObject)mat)->type_name : MATMPIBAIJ));
19959566063dSJacob Faibussowitsch     PetscCall(MatMPIBAIJSetPreallocation(M, bs, 0, dlens, 0, olens));
19969566063dSJacob Faibussowitsch     PetscCall(MatMPISBAIJSetPreallocation(M, bs, 0, dlens, 0, olens));
19979566063dSJacob Faibussowitsch     PetscCall(PetscFree2(dlens, olens));
199882094794SBarry Smith   } else {
199982094794SBarry Smith     PetscInt ml, nl;
200082094794SBarry Smith 
200182094794SBarry Smith     M = *newmat;
20029566063dSJacob Faibussowitsch     PetscCall(MatGetLocalSize(M, &ml, &nl));
20035f80ce2aSJacob Faibussowitsch     PetscCheck(ml == m, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Previous matrix must be same size/layout as request");
20049566063dSJacob Faibussowitsch     PetscCall(MatZeroEntries(M));
200582094794SBarry Smith     /*
200682094794SBarry Smith          The next two lines are needed so we may call MatSetValues_MPIAIJ() below directly,
200782094794SBarry Smith        rather than the slower MatSetValues().
200882094794SBarry Smith     */
200982094794SBarry Smith     M->was_assembled = PETSC_TRUE;
201082094794SBarry Smith     M->assembled     = PETSC_FALSE;
201182094794SBarry Smith   }
20129566063dSJacob Faibussowitsch   PetscCall(MatSetOption(M, MAT_ROW_ORIENTED, PETSC_FALSE));
20139566063dSJacob Faibussowitsch   PetscCall(MatGetOwnershipRange(M, &rstart, &rend));
201457508eceSPierre Jolivet   aij = (Mat_SeqBAIJ *)Mreuse->data;
201582094794SBarry Smith   ii  = aij->i;
201682094794SBarry Smith   jj  = aij->j;
201782094794SBarry Smith   aa  = aij->a;
201882094794SBarry Smith   for (i = 0; i < m; i++) {
201982094794SBarry Smith     row   = rstart / bs + i;
202082094794SBarry Smith     nz    = ii[i + 1] - ii[i];
20219371c9d4SSatish Balay     cwork = jj;
20228e3a54c0SPierre Jolivet     jj    = PetscSafePointerPlusOffset(jj, nz);
20239371c9d4SSatish Balay     vwork = aa;
20248e3a54c0SPierre Jolivet     aa    = PetscSafePointerPlusOffset(aa, nz * bs * bs);
20259566063dSJacob Faibussowitsch     PetscCall(MatSetValuesBlocked_MPIBAIJ(M, 1, &row, nz, cwork, vwork, INSERT_VALUES));
202682094794SBarry Smith   }
202782094794SBarry Smith 
20289566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(M, MAT_FINAL_ASSEMBLY));
20299566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(M, MAT_FINAL_ASSEMBLY));
203082094794SBarry Smith   *newmat = M;
203182094794SBarry Smith 
203282094794SBarry Smith   /* save submatrix used in processor for next request */
203382094794SBarry Smith   if (call == MAT_INITIAL_MATRIX) {
20349566063dSJacob Faibussowitsch     PetscCall(PetscObjectCompose((PetscObject)M, "SubMatrix", (PetscObject)Mreuse));
20359566063dSJacob Faibussowitsch     PetscCall(PetscObjectDereference((PetscObject)Mreuse));
203682094794SBarry Smith   }
20373ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
203882094794SBarry Smith }
203982094794SBarry Smith 
204066976f2fSJacob Faibussowitsch static PetscErrorCode MatPermute_MPIBAIJ(Mat A, IS rowp, IS colp, Mat *B)
2041d71ae5a4SJacob Faibussowitsch {
204282094794SBarry Smith   MPI_Comm        comm, pcomm;
2043a0a83eb5SRémi Lacroix   PetscInt        clocal_size, nrows;
204482094794SBarry Smith   const PetscInt *rows;
2045dbf0e21dSBarry Smith   PetscMPIInt     size;
2046a0a83eb5SRémi Lacroix   IS              crowp, lcolp;
204782094794SBarry Smith 
204882094794SBarry Smith   PetscFunctionBegin;
20499566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)A, &comm));
205082094794SBarry Smith   /* make a collective version of 'rowp' */
20519566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)rowp, &pcomm));
205282094794SBarry Smith   if (pcomm == comm) {
205382094794SBarry Smith     crowp = rowp;
205482094794SBarry Smith   } else {
20559566063dSJacob Faibussowitsch     PetscCall(ISGetSize(rowp, &nrows));
20569566063dSJacob Faibussowitsch     PetscCall(ISGetIndices(rowp, &rows));
20579566063dSJacob Faibussowitsch     PetscCall(ISCreateGeneral(comm, nrows, rows, PETSC_COPY_VALUES, &crowp));
20589566063dSJacob Faibussowitsch     PetscCall(ISRestoreIndices(rowp, &rows));
205982094794SBarry Smith   }
20609566063dSJacob Faibussowitsch   PetscCall(ISSetPermutation(crowp));
2061a0a83eb5SRémi Lacroix   /* make a local version of 'colp' */
20629566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)colp, &pcomm));
20639566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(pcomm, &size));
2064dbf0e21dSBarry Smith   if (size == 1) {
206582094794SBarry Smith     lcolp = colp;
206682094794SBarry Smith   } else {
20679566063dSJacob Faibussowitsch     PetscCall(ISAllGather(colp, &lcolp));
206882094794SBarry Smith   }
20699566063dSJacob Faibussowitsch   PetscCall(ISSetPermutation(lcolp));
207075f6568bSJed Brown   /* now we just get the submatrix */
20719566063dSJacob Faibussowitsch   PetscCall(MatGetLocalSize(A, NULL, &clocal_size));
2072fdfbdca6SPierre Jolivet   PetscCall(MatCreateSubMatrix_MPIBAIJ_Private(A, crowp, lcolp, clocal_size, MAT_INITIAL_MATRIX, B, PETSC_FALSE));
2073a0a83eb5SRémi Lacroix   /* clean up */
207448a46eb9SPierre Jolivet   if (pcomm != comm) PetscCall(ISDestroy(&crowp));
207548a46eb9SPierre Jolivet   if (size > 1) PetscCall(ISDestroy(&lcolp));
20763ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
207782094794SBarry Smith }
207882094794SBarry Smith 
207966976f2fSJacob Faibussowitsch static PetscErrorCode MatGetGhosts_MPIBAIJ(Mat mat, PetscInt *nghosts, const PetscInt *ghosts[])
2080d71ae5a4SJacob Faibussowitsch {
20818c7482ecSBarry Smith   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data;
20828c7482ecSBarry Smith   Mat_SeqBAIJ *B    = (Mat_SeqBAIJ *)baij->B->data;
20838c7482ecSBarry Smith 
20848c7482ecSBarry Smith   PetscFunctionBegin;
208526fbe8dcSKarl Rupp   if (nghosts) *nghosts = B->nbs;
208626fbe8dcSKarl Rupp   if (ghosts) *ghosts = baij->garray;
20873ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
20888c7482ecSBarry Smith }
20898c7482ecSBarry Smith 
209066976f2fSJacob Faibussowitsch static PetscErrorCode MatGetSeqNonzeroStructure_MPIBAIJ(Mat A, Mat *newmat)
2091d71ae5a4SJacob Faibussowitsch {
2092f6d58c54SBarry Smith   Mat          B;
2093f6d58c54SBarry Smith   Mat_MPIBAIJ *a  = (Mat_MPIBAIJ *)A->data;
2094f6d58c54SBarry Smith   Mat_SeqBAIJ *ad = (Mat_SeqBAIJ *)a->A->data, *bd = (Mat_SeqBAIJ *)a->B->data;
2095f6d58c54SBarry Smith   Mat_SeqAIJ  *b;
2096f4259b30SLisandro Dalcin   PetscMPIInt  size, rank, *recvcounts = NULL, *displs = NULL;
2097f6d58c54SBarry Smith   PetscInt     sendcount, i, *rstarts = A->rmap->range, n, cnt, j, bs = A->rmap->bs;
2098f6d58c54SBarry Smith   PetscInt     m, *garray = a->garray, *lens, *jsendbuf, *a_jsendbuf, *b_jsendbuf;
2099f6d58c54SBarry Smith 
2100f6d58c54SBarry Smith   PetscFunctionBegin;
21019566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)A), &size));
21029566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)A), &rank));
2103f6d58c54SBarry Smith 
21042ef1f0ffSBarry Smith   /*   Tell every processor the number of nonzeros per row  */
21059566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(A->rmap->N / bs, &lens));
2106ad540459SPierre Jolivet   for (i = A->rmap->rstart / bs; i < A->rmap->rend / bs; i++) lens[i] = ad->i[i - A->rmap->rstart / bs + 1] - ad->i[i - A->rmap->rstart / bs] + bd->i[i - A->rmap->rstart / bs + 1] - bd->i[i - A->rmap->rstart / bs];
21079566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(2 * size, &recvcounts));
2108f6d58c54SBarry Smith   displs = recvcounts + size;
2109f6d58c54SBarry Smith   for (i = 0; i < size; i++) {
21106497c311SBarry Smith     PetscCall(PetscMPIIntCast(A->rmap->range[i + 1] / bs - A->rmap->range[i] / bs, &recvcounts[i]));
21116497c311SBarry Smith     PetscCall(PetscMPIIntCast(A->rmap->range[i] / bs, &displs[i]));
2112f6d58c54SBarry Smith   }
21139566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Allgatherv(MPI_IN_PLACE, 0, MPI_DATATYPE_NULL, lens, recvcounts, displs, MPIU_INT, PetscObjectComm((PetscObject)A)));
21142ef1f0ffSBarry Smith   /* Create the sequential matrix of the same type as the local block diagonal  */
21159566063dSJacob Faibussowitsch   PetscCall(MatCreate(PETSC_COMM_SELF, &B));
21169566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(B, A->rmap->N / bs, A->cmap->N / bs, PETSC_DETERMINE, PETSC_DETERMINE));
21179566063dSJacob Faibussowitsch   PetscCall(MatSetType(B, MATSEQAIJ));
21189566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJSetPreallocation(B, 0, lens));
2119f6d58c54SBarry Smith   b = (Mat_SeqAIJ *)B->data;
2120f6d58c54SBarry Smith 
21212ef1f0ffSBarry Smith   /*     Copy my part of matrix column indices over  */
2122f6d58c54SBarry Smith   sendcount  = ad->nz + bd->nz;
2123f6d58c54SBarry Smith   jsendbuf   = b->j + b->i[rstarts[rank] / bs];
2124f6d58c54SBarry Smith   a_jsendbuf = ad->j;
2125f6d58c54SBarry Smith   b_jsendbuf = bd->j;
2126f6d58c54SBarry Smith   n          = A->rmap->rend / bs - A->rmap->rstart / bs;
2127f6d58c54SBarry Smith   cnt        = 0;
2128f6d58c54SBarry Smith   for (i = 0; i < n; i++) {
2129f6d58c54SBarry Smith     /* put in lower diagonal portion */
2130f6d58c54SBarry Smith     m = bd->i[i + 1] - bd->i[i];
2131f6d58c54SBarry Smith     while (m > 0) {
2132f6d58c54SBarry Smith       /* is it above diagonal (in bd (compressed) numbering) */
2133f6d58c54SBarry Smith       if (garray[*b_jsendbuf] > A->rmap->rstart / bs + i) break;
2134f6d58c54SBarry Smith       jsendbuf[cnt++] = garray[*b_jsendbuf++];
2135f6d58c54SBarry Smith       m--;
2136f6d58c54SBarry Smith     }
2137f6d58c54SBarry Smith 
2138f6d58c54SBarry Smith     /* put in diagonal portion */
2139ad540459SPierre Jolivet     for (j = ad->i[i]; j < ad->i[i + 1]; j++) jsendbuf[cnt++] = A->rmap->rstart / bs + *a_jsendbuf++;
2140f6d58c54SBarry Smith 
2141f6d58c54SBarry Smith     /* put in upper diagonal portion */
2142ad540459SPierre Jolivet     while (m-- > 0) jsendbuf[cnt++] = garray[*b_jsendbuf++];
2143f6d58c54SBarry Smith   }
21445f80ce2aSJacob Faibussowitsch   PetscCheck(cnt == sendcount, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Corrupted PETSc matrix: nz given %" PetscInt_FMT " actual nz %" PetscInt_FMT, sendcount, cnt);
2145f6d58c54SBarry Smith 
21462ef1f0ffSBarry Smith   /*  Gather all column indices to all processors  */
2147f6d58c54SBarry Smith   for (i = 0; i < size; i++) {
2148f6d58c54SBarry Smith     recvcounts[i] = 0;
2149ad540459SPierre Jolivet     for (j = A->rmap->range[i] / bs; j < A->rmap->range[i + 1] / bs; j++) recvcounts[i] += lens[j];
2150f6d58c54SBarry Smith   }
2151f6d58c54SBarry Smith   displs[0] = 0;
2152ad540459SPierre Jolivet   for (i = 1; i < size; i++) displs[i] = displs[i - 1] + recvcounts[i - 1];
21539566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Allgatherv(MPI_IN_PLACE, 0, MPI_DATATYPE_NULL, b->j, recvcounts, displs, MPIU_INT, PetscObjectComm((PetscObject)A)));
21545804573cSPierre Jolivet   /*  Assemble the matrix into usable form (note numerical values not yet set)  */
2155f6d58c54SBarry Smith   /* set the b->ilen (length of each row) values */
21569566063dSJacob Faibussowitsch   PetscCall(PetscArraycpy(b->ilen, lens, A->rmap->N / bs));
2157f6d58c54SBarry Smith   /* set the b->i indices */
2158f6d58c54SBarry Smith   b->i[0] = 0;
2159ad540459SPierre Jolivet   for (i = 1; i <= A->rmap->N / bs; i++) b->i[i] = b->i[i - 1] + lens[i - 1];
21609566063dSJacob Faibussowitsch   PetscCall(PetscFree(lens));
21619566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY));
21629566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY));
21639566063dSJacob Faibussowitsch   PetscCall(PetscFree(recvcounts));
2164f6d58c54SBarry Smith 
2165b94d7dedSBarry Smith   PetscCall(MatPropagateSymmetryOptions(A, B));
2166f6d58c54SBarry Smith   *newmat = B;
21673ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2168f6d58c54SBarry Smith }
2169f6d58c54SBarry Smith 
217066976f2fSJacob Faibussowitsch static PetscErrorCode MatSOR_MPIBAIJ(Mat matin, Vec bb, PetscReal omega, MatSORType flag, PetscReal fshift, PetscInt its, PetscInt lits, Vec xx)
2171d71ae5a4SJacob Faibussowitsch {
2172b1a666ecSBarry Smith   Mat_MPIBAIJ *mat = (Mat_MPIBAIJ *)matin->data;
2173f4259b30SLisandro Dalcin   Vec          bb1 = NULL;
2174b1a666ecSBarry Smith 
2175b1a666ecSBarry Smith   PetscFunctionBegin;
2176b1a666ecSBarry Smith   if (flag == SOR_APPLY_UPPER) {
21779566063dSJacob Faibussowitsch     PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx));
21783ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
2179b1a666ecSBarry Smith   }
2180b1a666ecSBarry Smith 
218148a46eb9SPierre Jolivet   if (its > 1 || ~flag & SOR_ZERO_INITIAL_GUESS) PetscCall(VecDuplicate(bb, &bb1));
21824e980039SJed Brown 
2183b1a666ecSBarry Smith   if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP) {
2184b1a666ecSBarry Smith     if (flag & SOR_ZERO_INITIAL_GUESS) {
21859566063dSJacob Faibussowitsch       PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx));
2186b1a666ecSBarry Smith       its--;
2187b1a666ecSBarry Smith     }
2188b1a666ecSBarry Smith 
2189b1a666ecSBarry Smith     while (its--) {
21909566063dSJacob Faibussowitsch       PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD));
21919566063dSJacob Faibussowitsch       PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD));
2192b1a666ecSBarry Smith 
2193b1a666ecSBarry Smith       /* update rhs: bb1 = bb - B*x */
21949566063dSJacob Faibussowitsch       PetscCall(VecScale(mat->lvec, -1.0));
21959566063dSJacob Faibussowitsch       PetscCall((*mat->B->ops->multadd)(mat->B, mat->lvec, bb, bb1));
2196b1a666ecSBarry Smith 
2197b1a666ecSBarry Smith       /* local sweep */
21989566063dSJacob Faibussowitsch       PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, SOR_SYMMETRIC_SWEEP, fshift, lits, 1, xx));
2199b1a666ecSBarry Smith     }
2200b1a666ecSBarry Smith   } else if (flag & SOR_LOCAL_FORWARD_SWEEP) {
2201b1a666ecSBarry Smith     if (flag & SOR_ZERO_INITIAL_GUESS) {
22029566063dSJacob Faibussowitsch       PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx));
2203b1a666ecSBarry Smith       its--;
2204b1a666ecSBarry Smith     }
2205b1a666ecSBarry Smith     while (its--) {
22069566063dSJacob Faibussowitsch       PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD));
22079566063dSJacob Faibussowitsch       PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD));
2208b1a666ecSBarry Smith 
2209b1a666ecSBarry Smith       /* update rhs: bb1 = bb - B*x */
22109566063dSJacob Faibussowitsch       PetscCall(VecScale(mat->lvec, -1.0));
22119566063dSJacob Faibussowitsch       PetscCall((*mat->B->ops->multadd)(mat->B, mat->lvec, bb, bb1));
2212b1a666ecSBarry Smith 
2213b1a666ecSBarry Smith       /* local sweep */
22149566063dSJacob Faibussowitsch       PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, SOR_FORWARD_SWEEP, fshift, lits, 1, xx));
2215b1a666ecSBarry Smith     }
2216b1a666ecSBarry Smith   } else if (flag & SOR_LOCAL_BACKWARD_SWEEP) {
2217b1a666ecSBarry Smith     if (flag & SOR_ZERO_INITIAL_GUESS) {
22189566063dSJacob Faibussowitsch       PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx));
2219b1a666ecSBarry Smith       its--;
2220b1a666ecSBarry Smith     }
2221b1a666ecSBarry Smith     while (its--) {
22229566063dSJacob Faibussowitsch       PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD));
22239566063dSJacob Faibussowitsch       PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD));
2224b1a666ecSBarry Smith 
2225b1a666ecSBarry Smith       /* update rhs: bb1 = bb - B*x */
22269566063dSJacob Faibussowitsch       PetscCall(VecScale(mat->lvec, -1.0));
22279566063dSJacob Faibussowitsch       PetscCall((*mat->B->ops->multadd)(mat->B, mat->lvec, bb, bb1));
2228b1a666ecSBarry Smith 
2229b1a666ecSBarry Smith       /* local sweep */
22309566063dSJacob Faibussowitsch       PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, SOR_BACKWARD_SWEEP, fshift, lits, 1, xx));
2231b1a666ecSBarry Smith     }
2232ce94432eSBarry Smith   } else SETERRQ(PetscObjectComm((PetscObject)matin), PETSC_ERR_SUP, "Parallel version of SOR requested not supported");
2233b1a666ecSBarry Smith 
22349566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&bb1));
22353ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2236b1a666ecSBarry Smith }
2237b1a666ecSBarry Smith 
223866976f2fSJacob Faibussowitsch static PetscErrorCode MatGetColumnReductions_MPIBAIJ(Mat A, PetscInt type, PetscReal *reductions)
2239d71ae5a4SJacob Faibussowitsch {
224047f7623dSRémi Lacroix   Mat_MPIBAIJ *aij = (Mat_MPIBAIJ *)A->data;
2241a873a8cdSSam Reynolds   PetscInt     m, N, i, *garray = aij->garray;
224247f7623dSRémi Lacroix   PetscInt     ib, jb, bs = A->rmap->bs;
224347f7623dSRémi Lacroix   Mat_SeqBAIJ *a_aij = (Mat_SeqBAIJ *)aij->A->data;
224447f7623dSRémi Lacroix   MatScalar   *a_val = a_aij->a;
224547f7623dSRémi Lacroix   Mat_SeqBAIJ *b_aij = (Mat_SeqBAIJ *)aij->B->data;
224647f7623dSRémi Lacroix   MatScalar   *b_val = b_aij->a;
224747f7623dSRémi Lacroix   PetscReal   *work;
224847f7623dSRémi Lacroix 
224947f7623dSRémi Lacroix   PetscFunctionBegin;
22509566063dSJacob Faibussowitsch   PetscCall(MatGetSize(A, &m, &N));
22519566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(N, &work));
2252857cbf51SRichard Tran Mills   if (type == NORM_2) {
225347f7623dSRémi Lacroix     for (i = a_aij->i[0]; i < a_aij->i[aij->A->rmap->n / bs]; i++) {
225447f7623dSRémi Lacroix       for (jb = 0; jb < bs; jb++) {
225547f7623dSRémi Lacroix         for (ib = 0; ib < bs; ib++) {
225647f7623dSRémi Lacroix           work[A->cmap->rstart + a_aij->j[i] * bs + jb] += PetscAbsScalar(*a_val * *a_val);
225747f7623dSRémi Lacroix           a_val++;
225847f7623dSRémi Lacroix         }
225947f7623dSRémi Lacroix       }
226047f7623dSRémi Lacroix     }
226147f7623dSRémi Lacroix     for (i = b_aij->i[0]; i < b_aij->i[aij->B->rmap->n / bs]; i++) {
226247f7623dSRémi Lacroix       for (jb = 0; jb < bs; jb++) {
226347f7623dSRémi Lacroix         for (ib = 0; ib < bs; ib++) {
226447f7623dSRémi Lacroix           work[garray[b_aij->j[i]] * bs + jb] += PetscAbsScalar(*b_val * *b_val);
226547f7623dSRémi Lacroix           b_val++;
226647f7623dSRémi Lacroix         }
226747f7623dSRémi Lacroix       }
226847f7623dSRémi Lacroix     }
2269857cbf51SRichard Tran Mills   } else if (type == NORM_1) {
227047f7623dSRémi Lacroix     for (i = a_aij->i[0]; i < a_aij->i[aij->A->rmap->n / bs]; i++) {
227147f7623dSRémi Lacroix       for (jb = 0; jb < bs; jb++) {
227247f7623dSRémi Lacroix         for (ib = 0; ib < bs; ib++) {
227347f7623dSRémi Lacroix           work[A->cmap->rstart + a_aij->j[i] * bs + jb] += PetscAbsScalar(*a_val);
227447f7623dSRémi Lacroix           a_val++;
227547f7623dSRémi Lacroix         }
227647f7623dSRémi Lacroix       }
227747f7623dSRémi Lacroix     }
227847f7623dSRémi Lacroix     for (i = b_aij->i[0]; i < b_aij->i[aij->B->rmap->n / bs]; i++) {
227947f7623dSRémi Lacroix       for (jb = 0; jb < bs; jb++) {
228047f7623dSRémi Lacroix         for (ib = 0; ib < bs; ib++) {
228147f7623dSRémi Lacroix           work[garray[b_aij->j[i]] * bs + jb] += PetscAbsScalar(*b_val);
228247f7623dSRémi Lacroix           b_val++;
228347f7623dSRémi Lacroix         }
228447f7623dSRémi Lacroix       }
228547f7623dSRémi Lacroix     }
2286857cbf51SRichard Tran Mills   } else if (type == NORM_INFINITY) {
228747f7623dSRémi Lacroix     for (i = a_aij->i[0]; i < a_aij->i[aij->A->rmap->n / bs]; i++) {
228847f7623dSRémi Lacroix       for (jb = 0; jb < bs; jb++) {
228947f7623dSRémi Lacroix         for (ib = 0; ib < bs; ib++) {
22906497c311SBarry Smith           PetscInt col = A->cmap->rstart + a_aij->j[i] * bs + jb;
229147f7623dSRémi Lacroix           work[col]    = PetscMax(PetscAbsScalar(*a_val), work[col]);
229247f7623dSRémi Lacroix           a_val++;
229347f7623dSRémi Lacroix         }
229447f7623dSRémi Lacroix       }
229547f7623dSRémi Lacroix     }
229647f7623dSRémi Lacroix     for (i = b_aij->i[0]; i < b_aij->i[aij->B->rmap->n / bs]; i++) {
229747f7623dSRémi Lacroix       for (jb = 0; jb < bs; jb++) {
229847f7623dSRémi Lacroix         for (ib = 0; ib < bs; ib++) {
22996497c311SBarry Smith           PetscInt col = garray[b_aij->j[i]] * bs + jb;
230047f7623dSRémi Lacroix           work[col]    = PetscMax(PetscAbsScalar(*b_val), work[col]);
230147f7623dSRémi Lacroix           b_val++;
230247f7623dSRémi Lacroix         }
230347f7623dSRémi Lacroix       }
230447f7623dSRémi Lacroix     }
2305857cbf51SRichard Tran Mills   } else if (type == REDUCTION_SUM_REALPART || type == REDUCTION_MEAN_REALPART) {
2306a873a8cdSSam Reynolds     for (i = a_aij->i[0]; i < a_aij->i[aij->A->rmap->n / bs]; i++) {
2307a873a8cdSSam Reynolds       for (jb = 0; jb < bs; jb++) {
2308a873a8cdSSam Reynolds         for (ib = 0; ib < bs; ib++) {
2309857cbf51SRichard Tran Mills           work[A->cmap->rstart + a_aij->j[i] * bs + jb] += PetscRealPart(*a_val);
2310a873a8cdSSam Reynolds           a_val++;
2311a873a8cdSSam Reynolds         }
2312a873a8cdSSam Reynolds       }
2313a873a8cdSSam Reynolds     }
2314a873a8cdSSam Reynolds     for (i = b_aij->i[0]; i < b_aij->i[aij->B->rmap->n / bs]; i++) {
2315a873a8cdSSam Reynolds       for (jb = 0; jb < bs; jb++) {
2316a873a8cdSSam Reynolds         for (ib = 0; ib < bs; ib++) {
2317857cbf51SRichard Tran Mills           work[garray[b_aij->j[i]] * bs + jb] += PetscRealPart(*b_val);
2318a873a8cdSSam Reynolds           b_val++;
2319a873a8cdSSam Reynolds         }
2320a873a8cdSSam Reynolds       }
2321a873a8cdSSam Reynolds     }
2322857cbf51SRichard Tran Mills   } else if (type == REDUCTION_SUM_IMAGINARYPART || type == REDUCTION_MEAN_IMAGINARYPART) {
2323857cbf51SRichard Tran Mills     for (i = a_aij->i[0]; i < a_aij->i[aij->A->rmap->n / bs]; i++) {
2324857cbf51SRichard Tran Mills       for (jb = 0; jb < bs; jb++) {
2325857cbf51SRichard Tran Mills         for (ib = 0; ib < bs; ib++) {
2326857cbf51SRichard Tran Mills           work[A->cmap->rstart + a_aij->j[i] * bs + jb] += PetscImaginaryPart(*a_val);
2327857cbf51SRichard Tran Mills           a_val++;
2328857cbf51SRichard Tran Mills         }
2329857cbf51SRichard Tran Mills       }
2330857cbf51SRichard Tran Mills     }
2331857cbf51SRichard Tran Mills     for (i = b_aij->i[0]; i < b_aij->i[aij->B->rmap->n / bs]; i++) {
2332857cbf51SRichard Tran Mills       for (jb = 0; jb < bs; jb++) {
2333857cbf51SRichard Tran Mills         for (ib = 0; ib < bs; ib++) {
2334857cbf51SRichard Tran Mills           work[garray[b_aij->j[i]] * bs + jb] += PetscImaginaryPart(*b_val);
2335857cbf51SRichard Tran Mills           b_val++;
2336857cbf51SRichard Tran Mills         }
2337857cbf51SRichard Tran Mills       }
2338857cbf51SRichard Tran Mills     }
2339857cbf51SRichard Tran Mills   } else SETERRQ(PetscObjectComm((PetscObject)A), PETSC_ERR_ARG_WRONG, "Unknown reduction type");
2340857cbf51SRichard Tran Mills   if (type == NORM_INFINITY) {
2341e91c04dfSPierre Jolivet     PetscCallMPI(MPIU_Allreduce(work, reductions, N, MPIU_REAL, MPIU_MAX, PetscObjectComm((PetscObject)A)));
234247f7623dSRémi Lacroix   } else {
2343e91c04dfSPierre Jolivet     PetscCallMPI(MPIU_Allreduce(work, reductions, N, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)A)));
234447f7623dSRémi Lacroix   }
23459566063dSJacob Faibussowitsch   PetscCall(PetscFree(work));
2346857cbf51SRichard Tran Mills   if (type == NORM_2) {
2347a873a8cdSSam Reynolds     for (i = 0; i < N; i++) reductions[i] = PetscSqrtReal(reductions[i]);
2348857cbf51SRichard Tran Mills   } else if (type == REDUCTION_MEAN_REALPART || type == REDUCTION_MEAN_IMAGINARYPART) {
2349a873a8cdSSam Reynolds     for (i = 0; i < N; i++) reductions[i] /= m;
235047f7623dSRémi Lacroix   }
23513ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
235247f7623dSRémi Lacroix }
235347f7623dSRémi Lacroix 
235466976f2fSJacob Faibussowitsch static PetscErrorCode MatInvertBlockDiagonal_MPIBAIJ(Mat A, const PetscScalar **values)
2355d71ae5a4SJacob Faibussowitsch {
2356bbead8a2SBarry Smith   Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data;
2357bbead8a2SBarry Smith 
2358bbead8a2SBarry Smith   PetscFunctionBegin;
23599566063dSJacob Faibussowitsch   PetscCall(MatInvertBlockDiagonal(a->A, values));
23607b6c816cSBarry Smith   A->factorerrortype             = a->A->factorerrortype;
23617b6c816cSBarry Smith   A->factorerror_zeropivot_value = a->A->factorerror_zeropivot_value;
23627b6c816cSBarry Smith   A->factorerror_zeropivot_row   = a->A->factorerror_zeropivot_row;
23633ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2364bbead8a2SBarry Smith }
2365bbead8a2SBarry Smith 
236666976f2fSJacob Faibussowitsch static PetscErrorCode MatShift_MPIBAIJ(Mat Y, PetscScalar a)
2367d71ae5a4SJacob Faibussowitsch {
23687d68702bSBarry Smith   Mat_MPIBAIJ *maij = (Mat_MPIBAIJ *)Y->data;
23696f33a894SBarry Smith   Mat_SeqBAIJ *aij  = (Mat_SeqBAIJ *)maij->A->data;
23707d68702bSBarry Smith 
23717d68702bSBarry Smith   PetscFunctionBegin;
23726f33a894SBarry Smith   if (!Y->preallocated) {
23739566063dSJacob Faibussowitsch     PetscCall(MatMPIBAIJSetPreallocation(Y, Y->rmap->bs, 1, NULL, 0, NULL));
23746f33a894SBarry Smith   } else if (!aij->nz) {
2375b83222d8SBarry Smith     PetscInt nonew = aij->nonew;
23769566063dSJacob Faibussowitsch     PetscCall(MatSeqBAIJSetPreallocation(maij->A, Y->rmap->bs, 1, NULL));
2377b83222d8SBarry Smith     aij->nonew = nonew;
23787d68702bSBarry Smith   }
23799566063dSJacob Faibussowitsch   PetscCall(MatShift_Basic(Y, a));
23803ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
23817d68702bSBarry Smith }
23828c7482ecSBarry Smith 
238366976f2fSJacob Faibussowitsch static PetscErrorCode MatMissingDiagonal_MPIBAIJ(Mat A, PetscBool *missing, PetscInt *d)
2384d71ae5a4SJacob Faibussowitsch {
23853b49f96aSBarry Smith   Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data;
23863b49f96aSBarry Smith 
23873b49f96aSBarry Smith   PetscFunctionBegin;
23885f80ce2aSJacob Faibussowitsch   PetscCheck(A->rmap->n == A->cmap->n, PETSC_COMM_SELF, PETSC_ERR_SUP, "Only works for square matrices");
23899566063dSJacob Faibussowitsch   PetscCall(MatMissingDiagonal(a->A, missing, d));
23903b49f96aSBarry Smith   if (d) {
23913b49f96aSBarry Smith     PetscInt rstart;
23929566063dSJacob Faibussowitsch     PetscCall(MatGetOwnershipRange(A, &rstart, NULL));
23933b49f96aSBarry Smith     *d += rstart / A->rmap->bs;
23943b49f96aSBarry Smith   }
23953ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
23963b49f96aSBarry Smith }
23973b49f96aSBarry Smith 
239866976f2fSJacob Faibussowitsch static PetscErrorCode MatGetDiagonalBlock_MPIBAIJ(Mat A, Mat *a)
2399d71ae5a4SJacob Faibussowitsch {
2400a5b7ff6bSBarry Smith   PetscFunctionBegin;
2401a5b7ff6bSBarry Smith   *a = ((Mat_MPIBAIJ *)A->data)->A;
24023ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2403a5b7ff6bSBarry Smith }
2404a5b7ff6bSBarry Smith 
240517ea310bSPierre Jolivet static PetscErrorCode MatEliminateZeros_MPIBAIJ(Mat A, PetscBool keep)
240617ea310bSPierre Jolivet {
240717ea310bSPierre Jolivet   Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data;
240817ea310bSPierre Jolivet 
240917ea310bSPierre Jolivet   PetscFunctionBegin;
241017ea310bSPierre Jolivet   PetscCall(MatEliminateZeros_SeqBAIJ(a->A, keep));        // possibly keep zero diagonal coefficients
241117ea310bSPierre Jolivet   PetscCall(MatEliminateZeros_SeqBAIJ(a->B, PETSC_FALSE)); // never keep zero diagonal coefficients
241217ea310bSPierre Jolivet   PetscFunctionReturn(PETSC_SUCCESS);
241317ea310bSPierre Jolivet }
241417ea310bSPierre Jolivet 
24153964eb88SJed Brown static struct _MatOps MatOps_Values = {MatSetValues_MPIBAIJ,
2416cc2dc46cSBarry Smith                                        MatGetRow_MPIBAIJ,
2417cc2dc46cSBarry Smith                                        MatRestoreRow_MPIBAIJ,
2418cc2dc46cSBarry Smith                                        MatMult_MPIBAIJ,
241997304618SKris Buschelman                                        /* 4*/ MatMultAdd_MPIBAIJ,
24207c922b88SBarry Smith                                        MatMultTranspose_MPIBAIJ,
24217c922b88SBarry Smith                                        MatMultTransposeAdd_MPIBAIJ,
2422f4259b30SLisandro Dalcin                                        NULL,
2423f4259b30SLisandro Dalcin                                        NULL,
2424f4259b30SLisandro Dalcin                                        NULL,
2425f4259b30SLisandro Dalcin                                        /*10*/ NULL,
2426f4259b30SLisandro Dalcin                                        NULL,
2427f4259b30SLisandro Dalcin                                        NULL,
2428b1a666ecSBarry Smith                                        MatSOR_MPIBAIJ,
2429cc2dc46cSBarry Smith                                        MatTranspose_MPIBAIJ,
243097304618SKris Buschelman                                        /*15*/ MatGetInfo_MPIBAIJ,
24317fc3c18eSBarry Smith                                        MatEqual_MPIBAIJ,
2432cc2dc46cSBarry Smith                                        MatGetDiagonal_MPIBAIJ,
2433cc2dc46cSBarry Smith                                        MatDiagonalScale_MPIBAIJ,
2434cc2dc46cSBarry Smith                                        MatNorm_MPIBAIJ,
243597304618SKris Buschelman                                        /*20*/ MatAssemblyBegin_MPIBAIJ,
2436cc2dc46cSBarry Smith                                        MatAssemblyEnd_MPIBAIJ,
2437cc2dc46cSBarry Smith                                        MatSetOption_MPIBAIJ,
2438cc2dc46cSBarry Smith                                        MatZeroEntries_MPIBAIJ,
2439d519adbfSMatthew Knepley                                        /*24*/ MatZeroRows_MPIBAIJ,
2440f4259b30SLisandro Dalcin                                        NULL,
2441f4259b30SLisandro Dalcin                                        NULL,
2442f4259b30SLisandro Dalcin                                        NULL,
2443f4259b30SLisandro Dalcin                                        NULL,
244426cec326SBarry Smith                                        /*29*/ MatSetUp_MPI_Hash,
2445f4259b30SLisandro Dalcin                                        NULL,
2446f4259b30SLisandro Dalcin                                        NULL,
2447a5b7ff6bSBarry Smith                                        MatGetDiagonalBlock_MPIBAIJ,
2448f4259b30SLisandro Dalcin                                        NULL,
2449d519adbfSMatthew Knepley                                        /*34*/ MatDuplicate_MPIBAIJ,
2450f4259b30SLisandro Dalcin                                        NULL,
2451f4259b30SLisandro Dalcin                                        NULL,
2452f4259b30SLisandro Dalcin                                        NULL,
2453f4259b30SLisandro Dalcin                                        NULL,
2454d519adbfSMatthew Knepley                                        /*39*/ MatAXPY_MPIBAIJ,
24557dae84e0SHong Zhang                                        MatCreateSubMatrices_MPIBAIJ,
2456cc2dc46cSBarry Smith                                        MatIncreaseOverlap_MPIBAIJ,
2457cc2dc46cSBarry Smith                                        MatGetValues_MPIBAIJ,
24583c896bc6SHong Zhang                                        MatCopy_MPIBAIJ,
2459f4259b30SLisandro Dalcin                                        /*44*/ NULL,
2460cc2dc46cSBarry Smith                                        MatScale_MPIBAIJ,
24617d68702bSBarry Smith                                        MatShift_MPIBAIJ,
2462f4259b30SLisandro Dalcin                                        NULL,
24636f0a72daSMatthew G. Knepley                                        MatZeroRowsColumns_MPIBAIJ,
2464f4259b30SLisandro Dalcin                                        /*49*/ NULL,
2465f4259b30SLisandro Dalcin                                        NULL,
2466f4259b30SLisandro Dalcin                                        NULL,
2467f4259b30SLisandro Dalcin                                        NULL,
2468f4259b30SLisandro Dalcin                                        NULL,
246993dfae19SHong Zhang                                        /*54*/ MatFDColoringCreate_MPIXAIJ,
2470f4259b30SLisandro Dalcin                                        NULL,
2471cc2dc46cSBarry Smith                                        MatSetUnfactored_MPIBAIJ,
247282094794SBarry Smith                                        MatPermute_MPIBAIJ,
2473cc2dc46cSBarry Smith                                        MatSetValuesBlocked_MPIBAIJ,
24747dae84e0SHong Zhang                                        /*59*/ MatCreateSubMatrix_MPIBAIJ,
2475f14a1c24SBarry Smith                                        MatDestroy_MPIBAIJ,
2476f14a1c24SBarry Smith                                        MatView_MPIBAIJ,
2477f4259b30SLisandro Dalcin                                        NULL,
2478f4259b30SLisandro Dalcin                                        NULL,
2479f4259b30SLisandro Dalcin                                        /*64*/ NULL,
2480f4259b30SLisandro Dalcin                                        NULL,
2481f4259b30SLisandro Dalcin                                        NULL,
2482f4259b30SLisandro Dalcin                                        NULL,
24838bb0f5c6SPierre Jolivet                                        MatGetRowMaxAbs_MPIBAIJ,
24848bb0f5c6SPierre Jolivet                                        /*69*/ NULL,
2485f4259b30SLisandro Dalcin                                        NULL,
2486f4259b30SLisandro Dalcin                                        NULL,
2487f6d58c54SBarry Smith                                        MatFDColoringApply_BAIJ,
2488f4259b30SLisandro Dalcin                                        NULL,
24898bb0f5c6SPierre Jolivet                                        /*74*/ NULL,
2490f4259b30SLisandro Dalcin                                        NULL,
2491f4259b30SLisandro Dalcin                                        NULL,
2492f4259b30SLisandro Dalcin                                        NULL,
24935bba2384SShri Abhyankar                                        MatLoad_MPIBAIJ,
24948bb0f5c6SPierre Jolivet                                        /*79*/ NULL,
24958bb0f5c6SPierre Jolivet                                        NULL,
24968bb0f5c6SPierre Jolivet                                        NULL,
24978bb0f5c6SPierre Jolivet                                        NULL,
24988bb0f5c6SPierre Jolivet                                        NULL,
2499f4259b30SLisandro Dalcin                                        /*84*/ NULL,
2500f4259b30SLisandro Dalcin                                        NULL,
2501f4259b30SLisandro Dalcin                                        NULL,
2502f4259b30SLisandro Dalcin                                        NULL,
2503f4259b30SLisandro Dalcin                                        NULL,
2504f4259b30SLisandro Dalcin                                        /*89*/ NULL,
2505f4259b30SLisandro Dalcin                                        NULL,
2506f4259b30SLisandro Dalcin                                        NULL,
2507f4259b30SLisandro Dalcin                                        NULL,
25088bb0f5c6SPierre Jolivet                                        MatConjugate_MPIBAIJ,
2509f4259b30SLisandro Dalcin                                        /*94*/ NULL,
2510f4259b30SLisandro Dalcin                                        NULL,
25118bb0f5c6SPierre Jolivet                                        MatRealPart_MPIBAIJ,
25128bb0f5c6SPierre Jolivet                                        MatImaginaryPart_MPIBAIJ,
2513f4259b30SLisandro Dalcin                                        NULL,
2514f4259b30SLisandro Dalcin                                        /*99*/ NULL,
2515f4259b30SLisandro Dalcin                                        NULL,
2516f4259b30SLisandro Dalcin                                        NULL,
2517f4259b30SLisandro Dalcin                                        NULL,
2518f4259b30SLisandro Dalcin                                        NULL,
25198bb0f5c6SPierre Jolivet                                        /*104*/ MatMissingDiagonal_MPIBAIJ,
25208bb0f5c6SPierre Jolivet                                        MatGetSeqNonzeroStructure_MPIBAIJ,
25218bb0f5c6SPierre Jolivet                                        NULL,
25228bb0f5c6SPierre Jolivet                                        MatGetGhosts_MPIBAIJ,
2523f4259b30SLisandro Dalcin                                        NULL,
2524f4259b30SLisandro Dalcin                                        /*109*/ NULL,
2525f4259b30SLisandro Dalcin                                        NULL,
2526f4259b30SLisandro Dalcin                                        NULL,
2527f4259b30SLisandro Dalcin                                        NULL,
2528f4259b30SLisandro Dalcin                                        NULL,
25298bb0f5c6SPierre Jolivet                                        /*114*/ MatGetMultiProcBlock_MPIBAIJ,
2530f4259b30SLisandro Dalcin                                        NULL,
25318bb0f5c6SPierre Jolivet                                        MatGetColumnReductions_MPIBAIJ,
25328bb0f5c6SPierre Jolivet                                        MatInvertBlockDiagonal_MPIBAIJ,
2533f4259b30SLisandro Dalcin                                        NULL,
2534f4259b30SLisandro Dalcin                                        /*119*/ NULL,
2535f4259b30SLisandro Dalcin                                        NULL,
2536f4259b30SLisandro Dalcin                                        NULL,
2537f4259b30SLisandro Dalcin                                        NULL,
25388bb0f5c6SPierre Jolivet                                        NULL,
2539f4259b30SLisandro Dalcin                                        /*124*/ NULL,
2540f4259b30SLisandro Dalcin                                        NULL,
2541f4259b30SLisandro Dalcin                                        NULL,
25428bb0f5c6SPierre Jolivet                                        MatSetBlockSizes_Default,
2543f4259b30SLisandro Dalcin                                        NULL,
25448bb0f5c6SPierre Jolivet                                        /*129*/ MatFDColoringSetUp_MPIXAIJ,
2545f4259b30SLisandro Dalcin                                        NULL,
25468bb0f5c6SPierre Jolivet                                        MatCreateMPIMatConcatenateSeqMat_MPIBAIJ,
2547f4259b30SLisandro Dalcin                                        NULL,
2548f4259b30SLisandro Dalcin                                        NULL,
2549f4259b30SLisandro Dalcin                                        /*134*/ NULL,
2550f4259b30SLisandro Dalcin                                        NULL,
2551f4259b30SLisandro Dalcin                                        NULL,
2552eede4a3fSMark Adams                                        MatEliminateZeros_MPIBAIJ,
25534cc2b5b5SPierre Jolivet                                        MatGetRowSumAbs_MPIBAIJ,
25548bb0f5c6SPierre Jolivet                                        /*139*/ NULL,
255542ce410bSJunchao Zhang                                        NULL,
255642ce410bSJunchao Zhang                                        NULL,
255703db1824SAlex Lindsay                                        MatCopyHashToXAIJ_MPI_Hash,
2558c2be7ffeSStefano Zampini                                        NULL,
255903db1824SAlex Lindsay                                        NULL};
256079bdfe76SSatish Balay 
2561cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIBAIJ_MPISBAIJ(Mat, MatType, MatReuse, Mat *);
2562c9225affSStefano Zampini PETSC_INTERN PetscErrorCode MatConvert_XAIJ_IS(Mat, MatType, MatReuse, Mat *);
2563d94109b8SHong Zhang 
256466976f2fSJacob Faibussowitsch static PetscErrorCode MatMPIBAIJSetPreallocationCSR_MPIBAIJ(Mat B, PetscInt bs, const PetscInt ii[], const PetscInt jj[], const PetscScalar V[])
2565d71ae5a4SJacob Faibussowitsch {
2566b8d659d7SLisandro Dalcin   PetscInt        m, rstart, cstart, cend;
2567f4259b30SLisandro Dalcin   PetscInt        i, j, dlen, olen, nz, nz_max = 0, *d_nnz = NULL, *o_nnz = NULL;
2568f4259b30SLisandro Dalcin   const PetscInt *JJ          = NULL;
2569f4259b30SLisandro Dalcin   PetscScalar    *values      = NULL;
2570d47bf9aaSJed Brown   PetscBool       roworiented = ((Mat_MPIBAIJ *)B->data)->roworiented;
25713bd0feecSPierre Jolivet   PetscBool       nooffprocentries;
2572aac34f13SBarry Smith 
2573aac34f13SBarry Smith   PetscFunctionBegin;
25749566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetBlockSize(B->rmap, bs));
25759566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetBlockSize(B->cmap, bs));
25769566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(B->rmap));
25779566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(B->cmap));
25789566063dSJacob Faibussowitsch   PetscCall(PetscLayoutGetBlockSize(B->rmap, &bs));
2579d0f46423SBarry Smith   m      = B->rmap->n / bs;
2580d0f46423SBarry Smith   rstart = B->rmap->rstart / bs;
2581d0f46423SBarry Smith   cstart = B->cmap->rstart / bs;
2582d0f46423SBarry Smith   cend   = B->cmap->rend / bs;
2583b8d659d7SLisandro Dalcin 
25845f80ce2aSJacob Faibussowitsch   PetscCheck(!ii[0], PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "ii[0] must be 0 but it is %" PetscInt_FMT, ii[0]);
25859566063dSJacob Faibussowitsch   PetscCall(PetscMalloc2(m, &d_nnz, m, &o_nnz));
2586aac34f13SBarry Smith   for (i = 0; i < m; i++) {
2587cf12db73SBarry Smith     nz = ii[i + 1] - ii[i];
25885f80ce2aSJacob Faibussowitsch     PetscCheck(nz >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Local row %" PetscInt_FMT " has a negative number of columns %" PetscInt_FMT, i, nz);
2589b8d659d7SLisandro Dalcin     nz_max = PetscMax(nz_max, nz);
259037cd3c0dSBarry Smith     dlen   = 0;
259137cd3c0dSBarry Smith     olen   = 0;
2592cf12db73SBarry Smith     JJ     = jj + ii[i];
2593b8d659d7SLisandro Dalcin     for (j = 0; j < nz; j++) {
259437cd3c0dSBarry Smith       if (*JJ < cstart || *JJ >= cend) olen++;
259537cd3c0dSBarry Smith       else dlen++;
2596aac34f13SBarry Smith       JJ++;
2597aac34f13SBarry Smith     }
259837cd3c0dSBarry Smith     d_nnz[i] = dlen;
259937cd3c0dSBarry Smith     o_nnz[i] = olen;
2600aac34f13SBarry Smith   }
26019566063dSJacob Faibussowitsch   PetscCall(MatMPIBAIJSetPreallocation(B, bs, 0, d_nnz, 0, o_nnz));
26029566063dSJacob Faibussowitsch   PetscCall(PetscFree2(d_nnz, o_nnz));
2603aac34f13SBarry Smith 
2604b8d659d7SLisandro Dalcin   values = (PetscScalar *)V;
260548a46eb9SPierre Jolivet   if (!values) PetscCall(PetscCalloc1(bs * bs * nz_max, &values));
2606b8d659d7SLisandro Dalcin   for (i = 0; i < m; i++) {
2607b8d659d7SLisandro Dalcin     PetscInt        row   = i + rstart;
2608cf12db73SBarry Smith     PetscInt        ncols = ii[i + 1] - ii[i];
2609cf12db73SBarry Smith     const PetscInt *icols = jj + ii[i];
2610bb80cfbbSStefano Zampini     if (bs == 1 || !roworiented) { /* block ordering matches the non-nested layout of MatSetValues so we can insert entire rows */
2611cf12db73SBarry Smith       const PetscScalar *svals = values + (V ? (bs * bs * ii[i]) : 0);
26129566063dSJacob Faibussowitsch       PetscCall(MatSetValuesBlocked_MPIBAIJ(B, 1, &row, ncols, icols, svals, INSERT_VALUES));
26133adadaf3SJed Brown     } else { /* block ordering does not match so we can only insert one block at a time. */
26143adadaf3SJed Brown       PetscInt j;
26153adadaf3SJed Brown       for (j = 0; j < ncols; j++) {
26163adadaf3SJed Brown         const PetscScalar *svals = values + (V ? (bs * bs * (ii[i] + j)) : 0);
26179566063dSJacob Faibussowitsch         PetscCall(MatSetValuesBlocked_MPIBAIJ(B, 1, &row, 1, &icols[j], svals, INSERT_VALUES));
26183adadaf3SJed Brown       }
26193adadaf3SJed Brown     }
2620aac34f13SBarry Smith   }
2621aac34f13SBarry Smith 
26229566063dSJacob Faibussowitsch   if (!V) PetscCall(PetscFree(values));
26233bd0feecSPierre Jolivet   nooffprocentries    = B->nooffprocentries;
26243bd0feecSPierre Jolivet   B->nooffprocentries = PETSC_TRUE;
26259566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY));
26269566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY));
26273bd0feecSPierre Jolivet   B->nooffprocentries = nooffprocentries;
26283bd0feecSPierre Jolivet 
26299566063dSJacob Faibussowitsch   PetscCall(MatSetOption(B, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE));
26303ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2631aac34f13SBarry Smith }
2632aac34f13SBarry Smith 
2633aac34f13SBarry Smith /*@C
263411a5261eSBarry Smith   MatMPIBAIJSetPreallocationCSR - Creates a sparse parallel matrix in `MATBAIJ` format using the given nonzero structure and (optional) numerical values
2635aac34f13SBarry Smith 
2636d083f849SBarry Smith   Collective
2637aac34f13SBarry Smith 
2638aac34f13SBarry Smith   Input Parameters:
26391c4f3114SJed Brown + B  - the matrix
2640dfb205c3SBarry Smith . bs - the block size
264120f4b53cSBarry Smith . i  - the indices into `j` for the start of each local row (starts with zero)
2642aac34f13SBarry Smith . j  - the column indices for each local row (starts with zero) these must be sorted for each row
2643d8a51d2aSBarry Smith - v  - optional values in the matrix, use `NULL` if not provided
2644aac34f13SBarry Smith 
2645664954b6SBarry Smith   Level: advanced
2646aac34f13SBarry Smith 
264795452b02SPatrick Sanan   Notes:
2648d8a51d2aSBarry Smith   The `i`, `j`, and `v` arrays ARE copied by this routine into the internal format used by PETSc;
2649d8a51d2aSBarry Smith   thus you CANNOT change the matrix entries by changing the values of `v` after you have
2650d8a51d2aSBarry Smith   called this routine.
2651d8a51d2aSBarry Smith 
265211a5261eSBarry Smith   The order of the entries in values is specified by the `MatOption` `MAT_ROW_ORIENTED`.  For example, C programs
265311a5261eSBarry Smith   may want to use the default `MAT_ROW_ORIENTED` with value `PETSC_TRUE` and use an array v[nnz][bs][bs] where the second index is
26543adadaf3SJed Brown   over rows within a block and the last index is over columns within a block row.  Fortran programs will likely set
265511a5261eSBarry Smith   `MAT_ROW_ORIENTED` with value `PETSC_FALSE` and use a Fortran array v(bs,bs,nnz) in which the first index is over rows within a
26563adadaf3SJed Brown   block column and the second index is over columns within a block.
26573adadaf3SJed Brown 
2658664954b6SBarry Smith   Though this routine has Preallocation() in the name it also sets the exact nonzero locations of the matrix entries and usually the numerical values as well
2659664954b6SBarry Smith 
26607d2c085eSPierre Jolivet .seealso: `Mat`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIBAIJSetPreallocation()`, `MatCreateAIJ()`, `MATMPIAIJ`, `MatCreateMPIBAIJWithArrays()`, `MATMPIBAIJ`
2661aac34f13SBarry Smith @*/
2662d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIBAIJSetPreallocationCSR(Mat B, PetscInt bs, const PetscInt i[], const PetscInt j[], const PetscScalar v[])
2663d71ae5a4SJacob Faibussowitsch {
2664aac34f13SBarry Smith   PetscFunctionBegin;
26656ba663aaSJed Brown   PetscValidHeaderSpecific(B, MAT_CLASSID, 1);
26666ba663aaSJed Brown   PetscValidType(B, 1);
26676ba663aaSJed Brown   PetscValidLogicalCollectiveInt(B, bs, 2);
2668cac4c232SBarry Smith   PetscTryMethod(B, "MatMPIBAIJSetPreallocationCSR_C", (Mat, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[]), (B, bs, i, j, v));
26693ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2670aac34f13SBarry Smith }
2671aac34f13SBarry Smith 
2672d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIBAIJSetPreallocation_MPIBAIJ(Mat B, PetscInt bs, PetscInt d_nz, const PetscInt *d_nnz, PetscInt o_nz, const PetscInt *o_nnz)
2673d71ae5a4SJacob Faibussowitsch {
2674ad79cf63SBarry Smith   Mat_MPIBAIJ *b = (Mat_MPIBAIJ *)B->data;
2675535b19f3SBarry Smith   PetscInt     i;
26765d2a9ed1SStefano Zampini   PetscMPIInt  size;
2677a23d5eceSKris Buschelman 
2678a23d5eceSKris Buschelman   PetscFunctionBegin;
2679ad79cf63SBarry Smith   if (B->hash_active) {
2680aea10558SJacob Faibussowitsch     B->ops[0]      = b->cops;
2681ad79cf63SBarry Smith     B->hash_active = PETSC_FALSE;
2682ad79cf63SBarry Smith   }
2683ad79cf63SBarry Smith   if (!B->preallocated) PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)B), bs, &B->bstash));
268458b7e2c1SStefano Zampini   PetscCall(MatSetBlockSize(B, bs));
26859566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(B->rmap));
26869566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(B->cmap));
26879566063dSJacob Faibussowitsch   PetscCall(PetscLayoutGetBlockSize(B->rmap, &bs));
2688899cda47SBarry Smith 
2689a23d5eceSKris Buschelman   if (d_nnz) {
2690ad540459SPierre Jolivet     for (i = 0; i < B->rmap->n / bs; i++) PetscCheck(d_nnz[i] >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "d_nnz cannot be less than -1: local row %" PetscInt_FMT " value %" PetscInt_FMT, i, d_nnz[i]);
2691a23d5eceSKris Buschelman   }
2692a23d5eceSKris Buschelman   if (o_nnz) {
2693ad540459SPierre Jolivet     for (i = 0; i < B->rmap->n / bs; i++) PetscCheck(o_nnz[i] >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "o_nnz cannot be less than -1: local row %" PetscInt_FMT " value %" PetscInt_FMT, i, o_nnz[i]);
2694a23d5eceSKris Buschelman   }
2695a23d5eceSKris Buschelman 
2696a23d5eceSKris Buschelman   b->bs2 = bs * bs;
2697d0f46423SBarry Smith   b->mbs = B->rmap->n / bs;
2698d0f46423SBarry Smith   b->nbs = B->cmap->n / bs;
2699d0f46423SBarry Smith   b->Mbs = B->rmap->N / bs;
2700d0f46423SBarry Smith   b->Nbs = B->cmap->N / bs;
2701a23d5eceSKris Buschelman 
2702ad540459SPierre Jolivet   for (i = 0; i <= b->size; i++) b->rangebs[i] = B->rmap->range[i] / bs;
2703d0f46423SBarry Smith   b->rstartbs = B->rmap->rstart / bs;
2704d0f46423SBarry Smith   b->rendbs   = B->rmap->rend / bs;
2705d0f46423SBarry Smith   b->cstartbs = B->cmap->rstart / bs;
2706d0f46423SBarry Smith   b->cendbs   = B->cmap->rend / bs;
2707a23d5eceSKris Buschelman 
2708cb7b82ddSBarry Smith #if defined(PETSC_USE_CTABLE)
2709eec179cfSJacob Faibussowitsch   PetscCall(PetscHMapIDestroy(&b->colmap));
2710cb7b82ddSBarry Smith #else
27119566063dSJacob Faibussowitsch   PetscCall(PetscFree(b->colmap));
2712cb7b82ddSBarry Smith #endif
27139566063dSJacob Faibussowitsch   PetscCall(PetscFree(b->garray));
27149566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&b->lvec));
27159566063dSJacob Faibussowitsch   PetscCall(VecScatterDestroy(&b->Mvctx));
2716cb7b82ddSBarry Smith 
27179566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)B), &size));
2718c508b908SBarry Smith 
2719c508b908SBarry Smith   MatSeqXAIJGetOptions_Private(b->B);
27209566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&b->B));
27219566063dSJacob Faibussowitsch   PetscCall(MatCreate(PETSC_COMM_SELF, &b->B));
27229566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(b->B, B->rmap->n, size > 1 ? B->cmap->N : 0, B->rmap->n, size > 1 ? B->cmap->N : 0));
27239566063dSJacob Faibussowitsch   PetscCall(MatSetType(b->B, MATSEQBAIJ));
2724c508b908SBarry Smith   MatSeqXAIJRestoreOptions_Private(b->B);
2725cb7b82ddSBarry Smith 
2726c508b908SBarry Smith   MatSeqXAIJGetOptions_Private(b->A);
2727ad79cf63SBarry Smith   PetscCall(MatDestroy(&b->A));
27289566063dSJacob Faibussowitsch   PetscCall(MatCreate(PETSC_COMM_SELF, &b->A));
27299566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(b->A, B->rmap->n, B->cmap->n, B->rmap->n, B->cmap->n));
27309566063dSJacob Faibussowitsch   PetscCall(MatSetType(b->A, MATSEQBAIJ));
2731c508b908SBarry Smith   MatSeqXAIJRestoreOptions_Private(b->A);
2732a23d5eceSKris Buschelman 
27339566063dSJacob Faibussowitsch   PetscCall(MatSeqBAIJSetPreallocation(b->A, bs, d_nz, d_nnz));
27349566063dSJacob Faibussowitsch   PetscCall(MatSeqBAIJSetPreallocation(b->B, bs, o_nz, o_nnz));
2735526dfc15SBarry Smith   B->preallocated  = PETSC_TRUE;
2736cb7b82ddSBarry Smith   B->was_assembled = PETSC_FALSE;
2737cb7b82ddSBarry Smith   B->assembled     = PETSC_FALSE;
27383ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2739a23d5eceSKris Buschelman }
2740a23d5eceSKris Buschelman 
27417087cfbeSBarry Smith extern PetscErrorCode MatDiagonalScaleLocal_MPIBAIJ(Mat, Vec);
27427087cfbeSBarry Smith extern PetscErrorCode MatSetHashTableFactor_MPIBAIJ(Mat, PetscReal);
27435bf65638SKris Buschelman 
2744d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode MatConvert_MPIBAIJ_MPIAdj(Mat B, MatType newtype, MatReuse reuse, Mat *adj)
2745d71ae5a4SJacob Faibussowitsch {
274682094794SBarry Smith   Mat_MPIBAIJ    *b = (Mat_MPIBAIJ *)B->data;
274782094794SBarry Smith   Mat_SeqBAIJ    *d = (Mat_SeqBAIJ *)b->A->data, *o = (Mat_SeqBAIJ *)b->B->data;
274882094794SBarry Smith   PetscInt        M = B->rmap->n / B->rmap->bs, i, *ii, *jj, cnt, j, k, rstart = B->rmap->rstart / B->rmap->bs;
274982094794SBarry Smith   const PetscInt *id = d->i, *jd = d->j, *io = o->i, *jo = o->j, *garray = b->garray;
275082094794SBarry Smith 
275182094794SBarry Smith   PetscFunctionBegin;
27529566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(M + 1, &ii));
275382094794SBarry Smith   ii[0] = 0;
275482094794SBarry Smith   for (i = 0; i < M; i++) {
275508401ef6SPierre Jolivet     PetscCheck((id[i + 1] - id[i]) >= 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Indices wrong %" PetscInt_FMT " %" PetscInt_FMT " %" PetscInt_FMT, i, id[i], id[i + 1]);
275608401ef6SPierre Jolivet     PetscCheck((io[i + 1] - io[i]) >= 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Indices wrong %" PetscInt_FMT " %" PetscInt_FMT " %" PetscInt_FMT, i, io[i], io[i + 1]);
275782094794SBarry Smith     ii[i + 1] = ii[i] + id[i + 1] - id[i] + io[i + 1] - io[i];
27585ee9ba1cSJed Brown     /* remove one from count of matrix has diagonal */
27595ee9ba1cSJed Brown     for (j = id[i]; j < id[i + 1]; j++) {
27609371c9d4SSatish Balay       if (jd[j] == i) {
27619371c9d4SSatish Balay         ii[i + 1]--;
27629371c9d4SSatish Balay         break;
27639371c9d4SSatish Balay       }
27645ee9ba1cSJed Brown     }
276582094794SBarry Smith   }
27669566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(ii[M], &jj));
276782094794SBarry Smith   cnt = 0;
276882094794SBarry Smith   for (i = 0; i < M; i++) {
276982094794SBarry Smith     for (j = io[i]; j < io[i + 1]; j++) {
277082094794SBarry Smith       if (garray[jo[j]] > rstart) break;
277182094794SBarry Smith       jj[cnt++] = garray[jo[j]];
277282094794SBarry Smith     }
277382094794SBarry Smith     for (k = id[i]; k < id[i + 1]; k++) {
2774ad540459SPierre Jolivet       if (jd[k] != i) jj[cnt++] = rstart + jd[k];
277582094794SBarry Smith     }
2776ad540459SPierre Jolivet     for (; j < io[i + 1]; j++) jj[cnt++] = garray[jo[j]];
277782094794SBarry Smith   }
27789566063dSJacob Faibussowitsch   PetscCall(MatCreateMPIAdj(PetscObjectComm((PetscObject)B), M, B->cmap->N / B->rmap->bs, ii, jj, NULL, adj));
27793ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
278082094794SBarry Smith }
278182094794SBarry Smith 
2782c6db04a5SJed Brown #include <../src/mat/impls/aij/mpi/mpiaij.h>
278362471d69SBarry Smith 
2784cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_SeqBAIJ_SeqAIJ(Mat, MatType, MatReuse, Mat *);
2785b2573a8aSBarry Smith 
2786d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode MatConvert_MPIBAIJ_MPIAIJ(Mat A, MatType newtype, MatReuse reuse, Mat *newmat)
2787d71ae5a4SJacob Faibussowitsch {
278862471d69SBarry Smith   Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data;
278985a69837SSatish Balay   Mat_MPIAIJ  *b;
27905f80ce2aSJacob Faibussowitsch   Mat          B;
279162471d69SBarry Smith 
279262471d69SBarry Smith   PetscFunctionBegin;
27935f80ce2aSJacob Faibussowitsch   PetscCheck(A->assembled, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Matrix must be assembled");
279462471d69SBarry Smith 
27950f6d62edSLisandro Dalcin   if (reuse == MAT_REUSE_MATRIX) {
27960f6d62edSLisandro Dalcin     B = *newmat;
27970f6d62edSLisandro Dalcin   } else {
27989566063dSJacob Faibussowitsch     PetscCall(MatCreate(PetscObjectComm((PetscObject)A), &B));
27999566063dSJacob Faibussowitsch     PetscCall(MatSetType(B, MATMPIAIJ));
28009566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(B, A->rmap->n, A->cmap->n, A->rmap->N, A->cmap->N));
28019566063dSJacob Faibussowitsch     PetscCall(MatSetBlockSizes(B, A->rmap->bs, A->cmap->bs));
28029566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJSetPreallocation(B, 0, NULL));
28039566063dSJacob Faibussowitsch     PetscCall(MatMPIAIJSetPreallocation(B, 0, NULL, 0, NULL));
28040f6d62edSLisandro Dalcin   }
280562471d69SBarry Smith   b = (Mat_MPIAIJ *)B->data;
280662471d69SBarry Smith 
28070f6d62edSLisandro Dalcin   if (reuse == MAT_REUSE_MATRIX) {
28089566063dSJacob Faibussowitsch     PetscCall(MatConvert_SeqBAIJ_SeqAIJ(a->A, MATSEQAIJ, MAT_REUSE_MATRIX, &b->A));
28099566063dSJacob Faibussowitsch     PetscCall(MatConvert_SeqBAIJ_SeqAIJ(a->B, MATSEQAIJ, MAT_REUSE_MATRIX, &b->B));
28100f6d62edSLisandro Dalcin   } else {
28117c612885SStefano Zampini     PetscInt   *garray = a->garray;
28127c612885SStefano Zampini     Mat_SeqAIJ *bB;
28137c612885SStefano Zampini     PetscInt    bs, nnz;
28149566063dSJacob Faibussowitsch     PetscCall(MatDestroy(&b->A));
28159566063dSJacob Faibussowitsch     PetscCall(MatDestroy(&b->B));
28167c612885SStefano Zampini     /* just clear out the data structure */
2817eb14dd14SAlex Lindsay     PetscCall(MatDisAssemble_MPIAIJ(B, PETSC_FALSE));
28189566063dSJacob Faibussowitsch     PetscCall(MatConvert_SeqBAIJ_SeqAIJ(a->A, MATSEQAIJ, MAT_INITIAL_MATRIX, &b->A));
28199566063dSJacob Faibussowitsch     PetscCall(MatConvert_SeqBAIJ_SeqAIJ(a->B, MATSEQAIJ, MAT_INITIAL_MATRIX, &b->B));
28207c612885SStefano Zampini 
28217c612885SStefano Zampini     /* Global numbering for b->B columns */
28227c612885SStefano Zampini     bB  = (Mat_SeqAIJ *)b->B->data;
28237c612885SStefano Zampini     bs  = A->rmap->bs;
28247c612885SStefano Zampini     nnz = bB->i[A->rmap->n];
28257c612885SStefano Zampini     for (PetscInt k = 0; k < nnz; k++) {
28267c612885SStefano Zampini       PetscInt bj = bB->j[k] / bs;
28277c612885SStefano Zampini       PetscInt br = bB->j[k] % bs;
28287c612885SStefano Zampini       bB->j[k]    = garray[bj] * bs + br;
28297c612885SStefano Zampini     }
28300f6d62edSLisandro Dalcin   }
28319566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY));
28329566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY));
28330f6d62edSLisandro Dalcin 
2834511c6705SHong Zhang   if (reuse == MAT_INPLACE_MATRIX) {
28359566063dSJacob Faibussowitsch     PetscCall(MatHeaderReplace(A, &B));
283662471d69SBarry Smith   } else {
283762471d69SBarry Smith     *newmat = B;
283862471d69SBarry Smith   }
28393ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
284062471d69SBarry Smith }
284162471d69SBarry Smith 
28420bad9183SKris Buschelman /*MC
2843fafad747SKris Buschelman    MATMPIBAIJ - MATMPIBAIJ = "mpibaij" - A matrix type to be used for distributed block sparse matrices.
28440bad9183SKris Buschelman 
28450bad9183SKris Buschelman    Options Database Keys:
284611a5261eSBarry Smith + -mat_type mpibaij - sets the matrix type to `MATMPIBAIJ` during a call to `MatSetFromOptions()`
28478c07d4e3SBarry Smith . -mat_block_size <bs> - set the blocksize used to store the matrix
28486679dcc1SBarry Smith . -mat_baij_mult_version version - indicate the version of the matrix-vector product to use  (0 often indicates using BLAS)
284967b8a455SSatish Balay - -mat_use_hash_table <fact> - set hash table factor
28500bad9183SKris Buschelman 
28510bad9183SKris Buschelman    Level: beginner
28520cd7f59aSBarry Smith 
285311a5261eSBarry Smith    Note:
28545e0ad47dSPierre Jolivet     `MatSetOption(A, MAT_STRUCTURE_ONLY, PETSC_TRUE)` may be called for this matrix type. In this no
285511a5261eSBarry Smith     space is allocated for the nonzero entries and any entries passed with `MatSetValues()` are ignored
28560bad9183SKris Buschelman 
28575e0ad47dSPierre Jolivet .seealso: `Mat`, `MATBAIJ`, `MATSEQBAIJ`, `MatCreateBAIJ`
28580bad9183SKris Buschelman M*/
28590bad9183SKris Buschelman 
2860cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIBAIJ_MPIBSTRM(Mat, MatType, MatReuse, Mat *);
2861c0cdd4a1SDahai Guo 
2862d71ae5a4SJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatCreate_MPIBAIJ(Mat B)
2863d71ae5a4SJacob Faibussowitsch {
2864273d9f13SBarry Smith   Mat_MPIBAIJ *b;
286594ae4db5SBarry Smith   PetscBool    flg = PETSC_FALSE;
2866273d9f13SBarry Smith 
2867273d9f13SBarry Smith   PetscFunctionBegin;
28684dfa11a4SJacob Faibussowitsch   PetscCall(PetscNew(&b));
286982502324SSatish Balay   B->data      = (void *)b;
2870aea10558SJacob Faibussowitsch   B->ops[0]    = MatOps_Values;
2871273d9f13SBarry Smith   B->assembled = PETSC_FALSE;
2872273d9f13SBarry Smith 
2873273d9f13SBarry Smith   B->insertmode = NOT_SET_VALUES;
28749566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)B), &b->rank));
28759566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)B), &b->size));
2876273d9f13SBarry Smith 
2877273d9f13SBarry Smith   /* build local table of row and column ownerships */
28789566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(b->size + 1, &b->rangebs));
2879273d9f13SBarry Smith 
2880273d9f13SBarry Smith   /* build cache for off array entries formed */
28819566063dSJacob Faibussowitsch   PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)B), 1, &B->stash));
288226fbe8dcSKarl Rupp 
2883273d9f13SBarry Smith   b->donotstash  = PETSC_FALSE;
28840298fd71SBarry Smith   b->colmap      = NULL;
28850298fd71SBarry Smith   b->garray      = NULL;
2886273d9f13SBarry Smith   b->roworiented = PETSC_TRUE;
2887273d9f13SBarry Smith 
2888273d9f13SBarry Smith   /* stuff used in block assembly */
2889f4259b30SLisandro Dalcin   b->barray = NULL;
2890273d9f13SBarry Smith 
2891273d9f13SBarry Smith   /* stuff used for matrix vector multiply */
2892f4259b30SLisandro Dalcin   b->lvec  = NULL;
2893f4259b30SLisandro Dalcin   b->Mvctx = NULL;
2894273d9f13SBarry Smith 
2895273d9f13SBarry Smith   /* stuff for MatGetRow() */
2896f4259b30SLisandro Dalcin   b->rowindices   = NULL;
2897f4259b30SLisandro Dalcin   b->rowvalues    = NULL;
2898273d9f13SBarry Smith   b->getrowactive = PETSC_FALSE;
2899273d9f13SBarry Smith 
2900273d9f13SBarry Smith   /* hash table stuff */
2901f4259b30SLisandro Dalcin   b->ht           = NULL;
2902f4259b30SLisandro Dalcin   b->hd           = NULL;
2903273d9f13SBarry Smith   b->ht_size      = 0;
2904273d9f13SBarry Smith   b->ht_flag      = PETSC_FALSE;
2905273d9f13SBarry Smith   b->ht_fact      = 0;
2906273d9f13SBarry Smith   b->ht_total_ct  = 0;
2907273d9f13SBarry Smith   b->ht_insert_ct = 0;
2908273d9f13SBarry Smith 
29097dae84e0SHong Zhang   /* stuff for MatCreateSubMatrices_MPIBAIJ_local() */
29107a868f3eSHong Zhang   b->ijonly = PETSC_FALSE;
29117a868f3eSHong Zhang 
29129566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpibaij_mpiadj_C", MatConvert_MPIBAIJ_MPIAdj));
29139566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpibaij_mpiaij_C", MatConvert_MPIBAIJ_MPIAIJ));
29149566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpibaij_mpisbaij_C", MatConvert_MPIBAIJ_MPISBAIJ));
29157ea3e4caSstefano_zampini #if defined(PETSC_HAVE_HYPRE)
29169566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpibaij_hypre_C", MatConvert_AIJ_HYPRE));
29177ea3e4caSstefano_zampini #endif
29189566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatStoreValues_C", MatStoreValues_MPIBAIJ));
29199566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatRetrieveValues_C", MatRetrieveValues_MPIBAIJ));
29209566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMPIBAIJSetPreallocation_C", MatMPIBAIJSetPreallocation_MPIBAIJ));
29219566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMPIBAIJSetPreallocationCSR_C", MatMPIBAIJSetPreallocationCSR_MPIBAIJ));
29229566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatDiagonalScaleLocal_C", MatDiagonalScaleLocal_MPIBAIJ));
29239566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatSetHashTableFactor_C", MatSetHashTableFactor_MPIBAIJ));
29249566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpibaij_is_C", MatConvert_XAIJ_IS));
29259566063dSJacob Faibussowitsch   PetscCall(PetscObjectChangeTypeName((PetscObject)B, MATMPIBAIJ));
292694ae4db5SBarry Smith 
2927d0609cedSBarry Smith   PetscOptionsBegin(PetscObjectComm((PetscObject)B), NULL, "Options for loading MPIBAIJ matrix 1", "Mat");
29289566063dSJacob Faibussowitsch   PetscCall(PetscOptionsName("-mat_use_hash_table", "Use hash table to save time in constructing matrix", "MatSetOption", &flg));
292994ae4db5SBarry Smith   if (flg) {
293094ae4db5SBarry Smith     PetscReal fact = 1.39;
29319566063dSJacob Faibussowitsch     PetscCall(MatSetOption(B, MAT_USE_HASH_TABLE, PETSC_TRUE));
29329566063dSJacob Faibussowitsch     PetscCall(PetscOptionsReal("-mat_use_hash_table", "Use hash table factor", "MatMPIBAIJSetHashTableFactor", fact, &fact, NULL));
293394ae4db5SBarry Smith     if (fact <= 1.0) fact = 1.39;
29349566063dSJacob Faibussowitsch     PetscCall(MatMPIBAIJSetHashTableFactor(B, fact));
29359566063dSJacob Faibussowitsch     PetscCall(PetscInfo(B, "Hash table Factor used %5.2g\n", (double)fact));
293694ae4db5SBarry Smith   }
2937d0609cedSBarry Smith   PetscOptionsEnd();
29383ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2939273d9f13SBarry Smith }
2940273d9f13SBarry Smith 
29412920cce0SJacob Faibussowitsch // PetscClangLinter pragma disable: -fdoc-section-header-unknown
2942209238afSKris Buschelman /*MC
2943002d173eSKris Buschelman    MATBAIJ - MATBAIJ = "baij" - A matrix type to be used for block sparse matrices.
2944209238afSKris Buschelman 
294511a5261eSBarry Smith    This matrix type is identical to `MATSEQBAIJ` when constructed with a single process communicator,
294611a5261eSBarry Smith    and `MATMPIBAIJ` otherwise.
2947209238afSKris Buschelman 
2948209238afSKris Buschelman    Options Database Keys:
294911a5261eSBarry Smith . -mat_type baij - sets the matrix type to `MATBAIJ` during a call to `MatSetFromOptions()`
2950209238afSKris Buschelman 
2951209238afSKris Buschelman   Level: beginner
2952209238afSKris Buschelman 
295367be906fSBarry Smith .seealso: `Mat`, `MatCreateBAIJ()`, `MATSEQBAIJ`, `MATMPIBAIJ`, `MatMPIBAIJSetPreallocation()`, `MatMPIBAIJSetPreallocationCSR()`
2954209238afSKris Buschelman M*/
2955209238afSKris Buschelman 
29565d83a8b1SBarry Smith /*@
295711a5261eSBarry Smith   MatMPIBAIJSetPreallocation - Allocates memory for a sparse parallel matrix in `MATMPIBAIJ` format
295867be906fSBarry Smith   (block compressed row).
2959273d9f13SBarry Smith 
2960c3339decSBarry Smith   Collective
2961273d9f13SBarry Smith 
2962273d9f13SBarry Smith   Input Parameters:
29631c4f3114SJed Brown + B     - the matrix
296411a5261eSBarry Smith . bs    - size of block, the blocks are ALWAYS square. One can use `MatSetBlockSizes()` to set a different row and column blocksize but the row
296567be906fSBarry Smith           blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with `MatCreateVecs()`
2966273d9f13SBarry Smith . d_nz  - number of block nonzeros per block row in diagonal portion of local
2967273d9f13SBarry Smith            submatrix  (same for all local rows)
2968273d9f13SBarry Smith . d_nnz - array containing the number of block nonzeros in the various block rows
2969273d9f13SBarry Smith            of the in diagonal portion of the local (possibly different for each block
297067be906fSBarry Smith            row) or `NULL`.  If you plan to factor the matrix you must leave room for the diagonal entry and
297195742e49SBarry Smith            set it even if it is zero.
2972273d9f13SBarry Smith . o_nz  - number of block nonzeros per block row in the off-diagonal portion of local
2973273d9f13SBarry Smith            submatrix (same for all local rows).
2974273d9f13SBarry Smith - o_nnz - array containing the number of nonzeros in the various block rows of the
2975273d9f13SBarry Smith            off-diagonal portion of the local submatrix (possibly different for
297667be906fSBarry Smith            each block row) or `NULL`.
2977273d9f13SBarry Smith 
297849a6f317SBarry Smith    If the *_nnz parameter is given then the *_nz parameter is ignored
2979273d9f13SBarry Smith 
2980273d9f13SBarry Smith   Options Database Keys:
29818c07d4e3SBarry Smith + -mat_block_size            - size of the blocks to use
298267b8a455SSatish Balay - -mat_use_hash_table <fact> - set hash table factor
2983273d9f13SBarry Smith 
298467be906fSBarry Smith   Level: intermediate
298567be906fSBarry Smith 
2986273d9f13SBarry Smith   Notes:
298767be906fSBarry Smith   For good matrix assembly performance
298867be906fSBarry Smith   the user should preallocate the matrix storage by setting the parameters
298967be906fSBarry Smith   `d_nz` (or `d_nnz`) and `o_nz` (or `o_nnz`).  By setting these parameters accurately,
299067be906fSBarry Smith   performance can be increased by more than a factor of 50.
299167be906fSBarry Smith 
299211a5261eSBarry Smith   If `PETSC_DECIDE` or  `PETSC_DETERMINE` is used for a particular argument on one processor
2993273d9f13SBarry Smith   than it must be used on all processors that share the object for that argument.
2994273d9f13SBarry Smith 
2995273d9f13SBarry Smith   Storage Information:
2996273d9f13SBarry Smith   For a square global matrix we define each processor's diagonal portion
2997273d9f13SBarry Smith   to be its local rows and the corresponding columns (a square submatrix);
2998273d9f13SBarry Smith   each processor's off-diagonal portion encompasses the remainder of the
2999273d9f13SBarry Smith   local matrix (a rectangular submatrix).
3000273d9f13SBarry Smith 
3001273d9f13SBarry Smith   The user can specify preallocated storage for the diagonal part of
300267be906fSBarry Smith   the local submatrix with either `d_nz` or `d_nnz` (not both).  Set
300367be906fSBarry Smith   `d_nz` = `PETSC_DEFAULT` and `d_nnz` = `NULL` for PETSc to control dynamic
3004273d9f13SBarry Smith   memory allocation.  Likewise, specify preallocated storage for the
300567be906fSBarry Smith   off-diagonal part of the local submatrix with `o_nz` or `o_nnz` (not both).
3006273d9f13SBarry Smith 
3007273d9f13SBarry Smith   Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
3008273d9f13SBarry Smith   the figure below we depict these three local rows and all columns (0-11).
3009273d9f13SBarry Smith 
3010273d9f13SBarry Smith .vb
3011273d9f13SBarry Smith            0 1 2 3 4 5 6 7 8 9 10 11
3012a4b1a0f6SJed Brown           --------------------------
3013273d9f13SBarry Smith    row 3  |o o o d d d o o o o  o  o
3014273d9f13SBarry Smith    row 4  |o o o d d d o o o o  o  o
3015273d9f13SBarry Smith    row 5  |o o o d d d o o o o  o  o
3016a4b1a0f6SJed Brown           --------------------------
3017273d9f13SBarry Smith .ve
3018273d9f13SBarry Smith 
3019273d9f13SBarry Smith   Thus, any entries in the d locations are stored in the d (diagonal)
3020273d9f13SBarry Smith   submatrix, and any entries in the o locations are stored in the
3021273d9f13SBarry Smith   o (off-diagonal) submatrix.  Note that the d and the o submatrices are
302211a5261eSBarry Smith   stored simply in the `MATSEQBAIJ` format for compressed row storage.
3023273d9f13SBarry Smith 
302467be906fSBarry Smith   Now `d_nz` should indicate the number of block nonzeros per row in the d matrix,
302567be906fSBarry Smith   and `o_nz` should indicate the number of block nonzeros per row in the o matrix.
3026273d9f13SBarry Smith   In general, for PDE problems in which most nonzeros are near the diagonal,
302720f4b53cSBarry Smith   one expects `d_nz` >> `o_nz`.
3028273d9f13SBarry Smith 
302911a5261eSBarry Smith   You can call `MatGetInfo()` to get information on how effective the preallocation was;
3030aa95bbe8SBarry Smith   for example the fields mallocs,nz_allocated,nz_used,nz_unneeded;
303167be906fSBarry Smith   You can also run with the option `-info` and look for messages with the string
3032aa95bbe8SBarry Smith   malloc in them to see if additional memory allocation was needed.
3033aa95bbe8SBarry Smith 
303467be906fSBarry Smith .seealso: `Mat`, `MATMPIBAIJ`, `MatCreate()`, `MatCreateSeqBAIJ()`, `MatSetValues()`, `MatCreateBAIJ()`, `MatMPIBAIJSetPreallocationCSR()`, `PetscSplitOwnership()`
3035273d9f13SBarry Smith @*/
3036d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIBAIJSetPreallocation(Mat B, PetscInt bs, PetscInt d_nz, const PetscInt d_nnz[], PetscInt o_nz, const PetscInt o_nnz[])
3037d71ae5a4SJacob Faibussowitsch {
3038273d9f13SBarry Smith   PetscFunctionBegin;
30396ba663aaSJed Brown   PetscValidHeaderSpecific(B, MAT_CLASSID, 1);
30406ba663aaSJed Brown   PetscValidType(B, 1);
30416ba663aaSJed Brown   PetscValidLogicalCollectiveInt(B, bs, 2);
3042cac4c232SBarry Smith   PetscTryMethod(B, "MatMPIBAIJSetPreallocation_C", (Mat, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[]), (B, bs, d_nz, d_nnz, o_nz, o_nnz));
30433ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3044273d9f13SBarry Smith }
3045273d9f13SBarry Smith 
30462920cce0SJacob Faibussowitsch // PetscClangLinter pragma disable: -fdoc-section-header-unknown
30475d83a8b1SBarry Smith /*@
304811a5261eSBarry Smith   MatCreateBAIJ - Creates a sparse parallel matrix in `MATBAIJ` format
304967be906fSBarry Smith   (block compressed row).
305079bdfe76SSatish Balay 
3051d083f849SBarry Smith   Collective
3052db81eaa0SLois Curfman McInnes 
305379bdfe76SSatish Balay   Input Parameters:
3054db81eaa0SLois Curfman McInnes + comm  - MPI communicator
305511a5261eSBarry Smith . bs    - size of block, the blocks are ALWAYS square. One can use `MatSetBlockSizes()` to set a different row and column blocksize but the row
305611a5261eSBarry Smith           blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with `MatCreateVecs()`
305711a5261eSBarry Smith . m     - number of local rows (or `PETSC_DECIDE` to have calculated if M is given)
305892e8d321SLois Curfman McInnes           This value should be the same as the local size used in creating the
305992e8d321SLois Curfman McInnes           y vector for the matrix-vector product y = Ax.
306011a5261eSBarry Smith . n     - number of local columns (or `PETSC_DECIDE` to have calculated if N is given)
306192e8d321SLois Curfman McInnes           This value should be the same as the local size used in creating the
306292e8d321SLois Curfman McInnes           x vector for the matrix-vector product y = Ax.
306311a5261eSBarry Smith . M     - number of global rows (or `PETSC_DETERMINE` to have calculated if m is given)
306411a5261eSBarry Smith . N     - number of global columns (or `PETSC_DETERMINE` to have calculated if n is given)
306547a75d0bSBarry Smith . d_nz  - number of nonzero blocks per block row in diagonal portion of local
306679bdfe76SSatish Balay           submatrix  (same for all local rows)
306747a75d0bSBarry Smith . d_nnz - array containing the number of nonzero blocks in the various block rows
306892e8d321SLois Curfman McInnes           of the in diagonal portion of the local (possibly different for each block
30690298fd71SBarry Smith           row) or NULL.  If you plan to factor the matrix you must leave room for the diagonal entry
307095742e49SBarry Smith           and set it even if it is zero.
307147a75d0bSBarry Smith . o_nz  - number of nonzero blocks per block row in the off-diagonal portion of local
307279bdfe76SSatish Balay           submatrix (same for all local rows).
307347a75d0bSBarry Smith - o_nnz - array containing the number of nonzero blocks in the various block rows of the
307492e8d321SLois Curfman McInnes           off-diagonal portion of the local submatrix (possibly different for
30750298fd71SBarry Smith           each block row) or NULL.
307679bdfe76SSatish Balay 
307779bdfe76SSatish Balay   Output Parameter:
307879bdfe76SSatish Balay . A - the matrix
307979bdfe76SSatish Balay 
3080db81eaa0SLois Curfman McInnes   Options Database Keys:
30818c07d4e3SBarry Smith + -mat_block_size            - size of the blocks to use
308267b8a455SSatish Balay - -mat_use_hash_table <fact> - set hash table factor
30833ffaccefSLois Curfman McInnes 
308467be906fSBarry Smith   Level: intermediate
308567be906fSBarry Smith 
308667be906fSBarry Smith   Notes:
308777433607SBarry Smith   It is recommended that one use `MatCreateFromOptions()` or the `MatCreate()`, `MatSetType()` and/or `MatSetFromOptions()`,
308877433607SBarry Smith   MatXXXXSetPreallocation() paradigm instead of this routine directly.
308977433607SBarry Smith   [MatXXXXSetPreallocation() is, for example, `MatSeqBAIJSetPreallocation()`]
309077433607SBarry Smith 
309167be906fSBarry Smith   For good matrix assembly performance
309267be906fSBarry Smith   the user should preallocate the matrix storage by setting the parameters
309367be906fSBarry Smith   `d_nz` (or `d_nnz`) and `o_nz` (or `o_nnz`).  By setting these parameters accurately,
309467be906fSBarry Smith   performance can be increased by more than a factor of 50.
309567be906fSBarry Smith 
309649a6f317SBarry Smith   If the *_nnz parameter is given then the *_nz parameter is ignored
309749a6f317SBarry Smith 
309847a75d0bSBarry Smith   A nonzero block is any block that as 1 or more nonzeros in it
309947a75d0bSBarry Smith 
310079bdfe76SSatish Balay   The user MUST specify either the local or global matrix dimensions
310179bdfe76SSatish Balay   (possibly both).
310279bdfe76SSatish Balay 
310311a5261eSBarry Smith   If `PETSC_DECIDE` or  `PETSC_DETERMINE` is used for a particular argument on one processor
3104be79a94dSBarry Smith   than it must be used on all processors that share the object for that argument.
3105be79a94dSBarry Smith 
3106727bdf9bSBarry Smith   If `m` and `n` are not `PETSC_DECIDE`, then the values determine the `PetscLayout` of the matrix and the ranges returned by
3107727bdf9bSBarry Smith   `MatGetOwnershipRange()`,  `MatGetOwnershipRanges()`, `MatGetOwnershipRangeColumn()`, and `MatGetOwnershipRangesColumn()`.
3108727bdf9bSBarry Smith 
310979bdfe76SSatish Balay   Storage Information:
311079bdfe76SSatish Balay   For a square global matrix we define each processor's diagonal portion
311179bdfe76SSatish Balay   to be its local rows and the corresponding columns (a square submatrix);
311279bdfe76SSatish Balay   each processor's off-diagonal portion encompasses the remainder of the
311379bdfe76SSatish Balay   local matrix (a rectangular submatrix).
311479bdfe76SSatish Balay 
311579bdfe76SSatish Balay   The user can specify preallocated storage for the diagonal part of
311679bdfe76SSatish Balay   the local submatrix with either d_nz or d_nnz (not both).  Set
311767be906fSBarry Smith   `d_nz` = `PETSC_DEFAULT` and `d_nnz` = `NULL` for PETSc to control dynamic
311879bdfe76SSatish Balay   memory allocation.  Likewise, specify preallocated storage for the
311967be906fSBarry Smith   off-diagonal part of the local submatrix with `o_nz` or `o_nnz` (not both).
312079bdfe76SSatish Balay 
312179bdfe76SSatish Balay   Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
312279bdfe76SSatish Balay   the figure below we depict these three local rows and all columns (0-11).
312379bdfe76SSatish Balay 
3124db81eaa0SLois Curfman McInnes .vb
3125db81eaa0SLois Curfman McInnes            0 1 2 3 4 5 6 7 8 9 10 11
3126a4b1a0f6SJed Brown           --------------------------
3127db81eaa0SLois Curfman McInnes    row 3  |o o o d d d o o o o  o  o
3128db81eaa0SLois Curfman McInnes    row 4  |o o o d d d o o o o  o  o
3129db81eaa0SLois Curfman McInnes    row 5  |o o o d d d o o o o  o  o
3130a4b1a0f6SJed Brown           --------------------------
3131db81eaa0SLois Curfman McInnes .ve
313279bdfe76SSatish Balay 
313379bdfe76SSatish Balay   Thus, any entries in the d locations are stored in the d (diagonal)
313479bdfe76SSatish Balay   submatrix, and any entries in the o locations are stored in the
313579bdfe76SSatish Balay   o (off-diagonal) submatrix.  Note that the d and the o submatrices are
313611a5261eSBarry Smith   stored simply in the `MATSEQBAIJ` format for compressed row storage.
313779bdfe76SSatish Balay 
313867be906fSBarry Smith   Now `d_nz` should indicate the number of block nonzeros per row in the d matrix,
313967be906fSBarry Smith   and `o_nz` should indicate the number of block nonzeros per row in the o matrix.
314079bdfe76SSatish Balay   In general, for PDE problems in which most nonzeros are near the diagonal,
314120f4b53cSBarry Smith   one expects `d_nz` >> `o_nz`.
314279bdfe76SSatish Balay 
3143727bdf9bSBarry Smith .seealso: `Mat`, `MatCreate()`, `MatCreateSeqBAIJ()`, `MatSetValues()`, `MatMPIBAIJSetPreallocation()`, `MatMPIBAIJSetPreallocationCSR()`,
3144727bdf9bSBarry Smith           `MatGetOwnershipRange()`,  `MatGetOwnershipRanges()`, `MatGetOwnershipRangeColumn()`, `MatGetOwnershipRangesColumn()`, `PetscLayout`
314579bdfe76SSatish Balay @*/
3146d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateBAIJ(MPI_Comm comm, PetscInt bs, PetscInt m, PetscInt n, PetscInt M, PetscInt N, PetscInt d_nz, const PetscInt d_nnz[], PetscInt o_nz, const PetscInt o_nnz[], Mat *A)
3147d71ae5a4SJacob Faibussowitsch {
3148b24ad042SBarry Smith   PetscMPIInt size;
314979bdfe76SSatish Balay 
3150d64ed03dSBarry Smith   PetscFunctionBegin;
31519566063dSJacob Faibussowitsch   PetscCall(MatCreate(comm, A));
31529566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(*A, m, n, M, N));
31539566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
3154273d9f13SBarry Smith   if (size > 1) {
31559566063dSJacob Faibussowitsch     PetscCall(MatSetType(*A, MATMPIBAIJ));
31569566063dSJacob Faibussowitsch     PetscCall(MatMPIBAIJSetPreallocation(*A, bs, d_nz, d_nnz, o_nz, o_nnz));
3157273d9f13SBarry Smith   } else {
31589566063dSJacob Faibussowitsch     PetscCall(MatSetType(*A, MATSEQBAIJ));
31599566063dSJacob Faibussowitsch     PetscCall(MatSeqBAIJSetPreallocation(*A, bs, d_nz, d_nnz));
31603914022bSBarry Smith   }
31613ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
316279bdfe76SSatish Balay }
3163026e39d0SSatish Balay 
3164d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatDuplicate_MPIBAIJ(Mat matin, MatDuplicateOption cpvalues, Mat *newmat)
3165d71ae5a4SJacob Faibussowitsch {
31660ac07820SSatish Balay   Mat          mat;
31670ac07820SSatish Balay   Mat_MPIBAIJ *a, *oldmat = (Mat_MPIBAIJ *)matin->data;
3168b24ad042SBarry Smith   PetscInt     len = 0;
31690ac07820SSatish Balay 
3170d64ed03dSBarry Smith   PetscFunctionBegin;
3171f4259b30SLisandro Dalcin   *newmat = NULL;
31729566063dSJacob Faibussowitsch   PetscCall(MatCreate(PetscObjectComm((PetscObject)matin), &mat));
31739566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(mat, matin->rmap->n, matin->cmap->n, matin->rmap->N, matin->cmap->N));
31749566063dSJacob Faibussowitsch   PetscCall(MatSetType(mat, ((PetscObject)matin)->type_name));
31757fff6886SHong Zhang 
3176420957c1SBarry Smith   PetscCall(PetscLayoutReference(matin->rmap, &mat->rmap));
3177420957c1SBarry Smith   PetscCall(PetscLayoutReference(matin->cmap, &mat->cmap));
3178420957c1SBarry Smith   if (matin->hash_active) {
3179420957c1SBarry Smith     PetscCall(MatSetUp(mat));
3180420957c1SBarry Smith   } else {
3181d5f3da31SBarry Smith     mat->factortype   = matin->factortype;
3182273d9f13SBarry Smith     mat->preallocated = PETSC_TRUE;
31830ac07820SSatish Balay     mat->assembled    = PETSC_TRUE;
31847fff6886SHong Zhang     mat->insertmode   = NOT_SET_VALUES;
31857fff6886SHong Zhang 
3186273d9f13SBarry Smith     a             = (Mat_MPIBAIJ *)mat->data;
3187d0f46423SBarry Smith     mat->rmap->bs = matin->rmap->bs;
31880ac07820SSatish Balay     a->bs2        = oldmat->bs2;
31890ac07820SSatish Balay     a->mbs        = oldmat->mbs;
31900ac07820SSatish Balay     a->nbs        = oldmat->nbs;
31910ac07820SSatish Balay     a->Mbs        = oldmat->Mbs;
31920ac07820SSatish Balay     a->Nbs        = oldmat->Nbs;
31930ac07820SSatish Balay 
31940ac07820SSatish Balay     a->size         = oldmat->size;
31950ac07820SSatish Balay     a->rank         = oldmat->rank;
3196aef5e8e0SSatish Balay     a->donotstash   = oldmat->donotstash;
3197aef5e8e0SSatish Balay     a->roworiented  = oldmat->roworiented;
3198f4259b30SLisandro Dalcin     a->rowindices   = NULL;
3199f4259b30SLisandro Dalcin     a->rowvalues    = NULL;
32000ac07820SSatish Balay     a->getrowactive = PETSC_FALSE;
3201f4259b30SLisandro Dalcin     a->barray       = NULL;
3202899cda47SBarry Smith     a->rstartbs     = oldmat->rstartbs;
3203899cda47SBarry Smith     a->rendbs       = oldmat->rendbs;
3204899cda47SBarry Smith     a->cstartbs     = oldmat->cstartbs;
3205899cda47SBarry Smith     a->cendbs       = oldmat->cendbs;
32060ac07820SSatish Balay 
3207133cdb44SSatish Balay     /* hash table stuff */
3208f4259b30SLisandro Dalcin     a->ht           = NULL;
3209f4259b30SLisandro Dalcin     a->hd           = NULL;
3210133cdb44SSatish Balay     a->ht_size      = 0;
3211133cdb44SSatish Balay     a->ht_flag      = oldmat->ht_flag;
321225fdafccSSatish Balay     a->ht_fact      = oldmat->ht_fact;
3213133cdb44SSatish Balay     a->ht_total_ct  = 0;
3214133cdb44SSatish Balay     a->ht_insert_ct = 0;
3215133cdb44SSatish Balay 
32169566063dSJacob Faibussowitsch     PetscCall(PetscArraycpy(a->rangebs, oldmat->rangebs, a->size + 1));
32170ac07820SSatish Balay     if (oldmat->colmap) {
3218aa482453SBarry Smith #if defined(PETSC_USE_CTABLE)
3219eec179cfSJacob Faibussowitsch       PetscCall(PetscHMapIDuplicate(oldmat->colmap, &a->colmap));
322048e59246SSatish Balay #else
32219566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(a->Nbs, &a->colmap));
32229566063dSJacob Faibussowitsch       PetscCall(PetscArraycpy(a->colmap, oldmat->colmap, a->Nbs));
322348e59246SSatish Balay #endif
3224f4259b30SLisandro Dalcin     } else a->colmap = NULL;
32254beb1cfeSHong Zhang 
3226f4f49eeaSPierre Jolivet     if (oldmat->garray && (len = ((Mat_SeqBAIJ *)oldmat->B->data)->nbs)) {
32279566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(len, &a->garray));
32289566063dSJacob Faibussowitsch       PetscCall(PetscArraycpy(a->garray, oldmat->garray, len));
3229f4259b30SLisandro Dalcin     } else a->garray = NULL;
32300ac07820SSatish Balay 
32319566063dSJacob Faibussowitsch     PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)matin), matin->rmap->bs, &mat->bstash));
32329566063dSJacob Faibussowitsch     PetscCall(VecDuplicate(oldmat->lvec, &a->lvec));
32339566063dSJacob Faibussowitsch     PetscCall(VecScatterCopy(oldmat->Mvctx, &a->Mvctx));
32347fff6886SHong Zhang 
32359566063dSJacob Faibussowitsch     PetscCall(MatDuplicate(oldmat->A, cpvalues, &a->A));
32369566063dSJacob Faibussowitsch     PetscCall(MatDuplicate(oldmat->B, cpvalues, &a->B));
3237420957c1SBarry Smith   }
32389566063dSJacob Faibussowitsch   PetscCall(PetscFunctionListDuplicate(((PetscObject)matin)->qlist, &((PetscObject)mat)->qlist));
32390ac07820SSatish Balay   *newmat = mat;
32403ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
32410ac07820SSatish Balay }
324257b952d6SSatish Balay 
3243618cc2edSLisandro Dalcin /* Used for both MPIBAIJ and MPISBAIJ matrices */
3244d71ae5a4SJacob Faibussowitsch PetscErrorCode MatLoad_MPIBAIJ_Binary(Mat mat, PetscViewer viewer)
3245d71ae5a4SJacob Faibussowitsch {
3246b51a4376SLisandro Dalcin   PetscInt     header[4], M, N, nz, bs, m, n, mbs, nbs, rows, cols, sum, i, j, k;
3247b51a4376SLisandro Dalcin   PetscInt    *rowidxs, *colidxs, rs, cs, ce;
3248b51a4376SLisandro Dalcin   PetscScalar *matvals;
3249b51a4376SLisandro Dalcin 
3250b51a4376SLisandro Dalcin   PetscFunctionBegin;
32519566063dSJacob Faibussowitsch   PetscCall(PetscViewerSetUp(viewer));
3252b51a4376SLisandro Dalcin 
3253b51a4376SLisandro Dalcin   /* read in matrix header */
32549566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryRead(viewer, header, 4, NULL, PETSC_INT));
32555f80ce2aSJacob Faibussowitsch   PetscCheck(header[0] == MAT_FILE_CLASSID, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Not a matrix object in file");
32569371c9d4SSatish Balay   M  = header[1];
32579371c9d4SSatish Balay   N  = header[2];
32589371c9d4SSatish Balay   nz = header[3];
32595f80ce2aSJacob Faibussowitsch   PetscCheck(M >= 0, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Matrix row size (%" PetscInt_FMT ") in file is negative", M);
32605f80ce2aSJacob Faibussowitsch   PetscCheck(N >= 0, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Matrix column size (%" PetscInt_FMT ") in file is negative", N);
32615f80ce2aSJacob Faibussowitsch   PetscCheck(nz >= 0, PETSC_COMM_SELF, PETSC_ERR_FILE_UNEXPECTED, "Matrix stored in special format on disk, cannot load as MPIBAIJ");
3262b51a4376SLisandro Dalcin 
3263b51a4376SLisandro Dalcin   /* set block sizes from the viewer's .info file */
32649566063dSJacob Faibussowitsch   PetscCall(MatLoad_Binary_BlockSizes(mat, viewer));
3265618cc2edSLisandro Dalcin   /* set local sizes if not set already */
3266618cc2edSLisandro Dalcin   if (mat->rmap->n < 0 && M == N) mat->rmap->n = mat->cmap->n;
3267618cc2edSLisandro Dalcin   if (mat->cmap->n < 0 && M == N) mat->cmap->n = mat->rmap->n;
3268b51a4376SLisandro Dalcin   /* set global sizes if not set already */
3269b51a4376SLisandro Dalcin   if (mat->rmap->N < 0) mat->rmap->N = M;
3270b51a4376SLisandro Dalcin   if (mat->cmap->N < 0) mat->cmap->N = N;
32719566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(mat->rmap));
32729566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(mat->cmap));
3273b51a4376SLisandro Dalcin 
3274b51a4376SLisandro Dalcin   /* check if the matrix sizes are correct */
32759566063dSJacob Faibussowitsch   PetscCall(MatGetSize(mat, &rows, &cols));
32765f80ce2aSJacob Faibussowitsch   PetscCheck(M == rows && N == cols, PETSC_COMM_SELF, PETSC_ERR_FILE_UNEXPECTED, "Matrix in file of different sizes (%" PetscInt_FMT ", %" PetscInt_FMT ") than the input matrix (%" PetscInt_FMT ", %" PetscInt_FMT ")", M, N, rows, cols);
32779566063dSJacob Faibussowitsch   PetscCall(MatGetBlockSize(mat, &bs));
32789566063dSJacob Faibussowitsch   PetscCall(MatGetLocalSize(mat, &m, &n));
32799566063dSJacob Faibussowitsch   PetscCall(PetscLayoutGetRange(mat->rmap, &rs, NULL));
32809566063dSJacob Faibussowitsch   PetscCall(PetscLayoutGetRange(mat->cmap, &cs, &ce));
32819371c9d4SSatish Balay   mbs = m / bs;
32829371c9d4SSatish Balay   nbs = n / bs;
3283b51a4376SLisandro Dalcin 
3284b51a4376SLisandro Dalcin   /* read in row lengths and build row indices */
32859566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(m + 1, &rowidxs));
32869566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryReadAll(viewer, rowidxs + 1, m, PETSC_DECIDE, M, PETSC_INT));
32879371c9d4SSatish Balay   rowidxs[0] = 0;
32889371c9d4SSatish Balay   for (i = 0; i < m; i++) rowidxs[i + 1] += rowidxs[i];
3289462c564dSBarry Smith   PetscCallMPI(MPIU_Allreduce(&rowidxs[m], &sum, 1, MPIU_INT, MPI_SUM, PetscObjectComm((PetscObject)viewer)));
32905f80ce2aSJacob Faibussowitsch   PetscCheck(sum == nz, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Inconsistent matrix data in file: nonzeros = %" PetscInt_FMT ", sum-row-lengths = %" PetscInt_FMT, nz, sum);
3291b51a4376SLisandro Dalcin 
3292b51a4376SLisandro Dalcin   /* read in column indices and matrix values */
32939566063dSJacob Faibussowitsch   PetscCall(PetscMalloc2(rowidxs[m], &colidxs, rowidxs[m], &matvals));
32949566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryReadAll(viewer, colidxs, rowidxs[m], PETSC_DETERMINE, PETSC_DETERMINE, PETSC_INT));
32959566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryReadAll(viewer, matvals, rowidxs[m], PETSC_DETERMINE, PETSC_DETERMINE, PETSC_SCALAR));
3296b51a4376SLisandro Dalcin 
3297b51a4376SLisandro Dalcin   {                /* preallocate matrix storage */
3298b51a4376SLisandro Dalcin     PetscBT    bt; /* helper bit set to count diagonal nonzeros */
3299b51a4376SLisandro Dalcin     PetscHSetI ht; /* helper hash set to count off-diagonal nonzeros */
3300618cc2edSLisandro Dalcin     PetscBool  sbaij, done;
3301b51a4376SLisandro Dalcin     PetscInt  *d_nnz, *o_nnz;
3302b51a4376SLisandro Dalcin 
33039566063dSJacob Faibussowitsch     PetscCall(PetscBTCreate(nbs, &bt));
33049566063dSJacob Faibussowitsch     PetscCall(PetscHSetICreate(&ht));
33059566063dSJacob Faibussowitsch     PetscCall(PetscCalloc2(mbs, &d_nnz, mbs, &o_nnz));
33069566063dSJacob Faibussowitsch     PetscCall(PetscObjectTypeCompare((PetscObject)mat, MATMPISBAIJ, &sbaij));
3307b51a4376SLisandro Dalcin     for (i = 0; i < mbs; i++) {
33089566063dSJacob Faibussowitsch       PetscCall(PetscBTMemzero(nbs, bt));
33099566063dSJacob Faibussowitsch       PetscCall(PetscHSetIClear(ht));
3310618cc2edSLisandro Dalcin       for (k = 0; k < bs; k++) {
3311618cc2edSLisandro Dalcin         PetscInt row = bs * i + k;
3312618cc2edSLisandro Dalcin         for (j = rowidxs[row]; j < rowidxs[row + 1]; j++) {
3313618cc2edSLisandro Dalcin           PetscInt col = colidxs[j];
3314618cc2edSLisandro Dalcin           if (!sbaij || col >= row) {
3315618cc2edSLisandro Dalcin             if (col >= cs && col < ce) {
3316618cc2edSLisandro Dalcin               if (!PetscBTLookupSet(bt, (col - cs) / bs)) d_nnz[i]++;
3317b51a4376SLisandro Dalcin             } else {
33189566063dSJacob Faibussowitsch               PetscCall(PetscHSetIQueryAdd(ht, col / bs, &done));
3319b51a4376SLisandro Dalcin               if (done) o_nnz[i]++;
3320b51a4376SLisandro Dalcin             }
3321b51a4376SLisandro Dalcin           }
3322618cc2edSLisandro Dalcin         }
3323618cc2edSLisandro Dalcin       }
3324618cc2edSLisandro Dalcin     }
33259566063dSJacob Faibussowitsch     PetscCall(PetscBTDestroy(&bt));
33269566063dSJacob Faibussowitsch     PetscCall(PetscHSetIDestroy(&ht));
33279566063dSJacob Faibussowitsch     PetscCall(MatMPIBAIJSetPreallocation(mat, bs, 0, d_nnz, 0, o_nnz));
33289566063dSJacob Faibussowitsch     PetscCall(MatMPISBAIJSetPreallocation(mat, bs, 0, d_nnz, 0, o_nnz));
33299566063dSJacob Faibussowitsch     PetscCall(PetscFree2(d_nnz, o_nnz));
3330b51a4376SLisandro Dalcin   }
3331b51a4376SLisandro Dalcin 
3332b51a4376SLisandro Dalcin   /* store matrix values */
3333b51a4376SLisandro Dalcin   for (i = 0; i < m; i++) {
3334b51a4376SLisandro Dalcin     PetscInt row = rs + i, s = rowidxs[i], e = rowidxs[i + 1];
33359927e4dfSBarry Smith     PetscUseTypeMethod(mat, setvalues, 1, &row, e - s, colidxs + s, matvals + s, INSERT_VALUES);
3336b51a4376SLisandro Dalcin   }
3337b51a4376SLisandro Dalcin 
33389566063dSJacob Faibussowitsch   PetscCall(PetscFree(rowidxs));
33399566063dSJacob Faibussowitsch   PetscCall(PetscFree2(colidxs, matvals));
33409566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(mat, MAT_FINAL_ASSEMBLY));
33419566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(mat, MAT_FINAL_ASSEMBLY));
33423ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3343b51a4376SLisandro Dalcin }
3344b51a4376SLisandro Dalcin 
3345d71ae5a4SJacob Faibussowitsch PetscErrorCode MatLoad_MPIBAIJ(Mat mat, PetscViewer viewer)
3346d71ae5a4SJacob Faibussowitsch {
33477f489da9SVaclav Hapla   PetscBool isbinary;
33484683f7a4SShri Abhyankar 
33494683f7a4SShri Abhyankar   PetscFunctionBegin;
33509566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary));
33515f80ce2aSJacob Faibussowitsch   PetscCheck(isbinary, PetscObjectComm((PetscObject)viewer), PETSC_ERR_SUP, "Viewer type %s not yet supported for reading %s matrices", ((PetscObject)viewer)->type_name, ((PetscObject)mat)->type_name);
33529566063dSJacob Faibussowitsch   PetscCall(MatLoad_MPIBAIJ_Binary(mat, viewer));
33533ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
33544683f7a4SShri Abhyankar }
33554683f7a4SShri Abhyankar 
3356133cdb44SSatish Balay /*@
335711a5261eSBarry Smith   MatMPIBAIJSetHashTableFactor - Sets the factor required to compute the size of the matrices hash table
3358133cdb44SSatish Balay 
3359133cdb44SSatish Balay   Input Parameters:
3360a2b725a8SWilliam Gropp + mat  - the matrix
3361a2b725a8SWilliam Gropp - fact - factor
3362133cdb44SSatish Balay 
336311a5261eSBarry Smith   Options Database Key:
336411a5261eSBarry Smith . -mat_use_hash_table <fact> - provide the factor
3365fee21e36SBarry Smith 
33668c890885SBarry Smith   Level: advanced
33678c890885SBarry Smith 
336867be906fSBarry Smith .seealso: `Mat`, `MATMPIBAIJ`, `MatSetOption()`
3369133cdb44SSatish Balay @*/
3370d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIBAIJSetHashTableFactor(Mat mat, PetscReal fact)
3371d71ae5a4SJacob Faibussowitsch {
33725bf65638SKris Buschelman   PetscFunctionBegin;
3373cac4c232SBarry Smith   PetscTryMethod(mat, "MatSetHashTableFactor_C", (Mat, PetscReal), (mat, fact));
33743ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
33755bf65638SKris Buschelman }
33765bf65638SKris Buschelman 
3377d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetHashTableFactor_MPIBAIJ(Mat mat, PetscReal fact)
3378d71ae5a4SJacob Faibussowitsch {
337925fdafccSSatish Balay   Mat_MPIBAIJ *baij;
3380133cdb44SSatish Balay 
3381133cdb44SSatish Balay   PetscFunctionBegin;
3382133cdb44SSatish Balay   baij          = (Mat_MPIBAIJ *)mat->data;
3383133cdb44SSatish Balay   baij->ht_fact = fact;
33843ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3385133cdb44SSatish Balay }
3386f2a5309cSSatish Balay 
3387d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIBAIJGetSeqBAIJ(Mat A, Mat *Ad, Mat *Ao, const PetscInt *colmap[])
3388d71ae5a4SJacob Faibussowitsch {
3389f2a5309cSSatish Balay   Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data;
3390ab4d48faSStefano Zampini   PetscBool    flg;
33915fd66863SKarl Rupp 
3392f2a5309cSSatish Balay   PetscFunctionBegin;
33939566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)A, MATMPIBAIJ, &flg));
33945f80ce2aSJacob Faibussowitsch   PetscCheck(flg, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "This function requires a MATMPIBAIJ matrix as input");
339521e72a00SBarry Smith   if (Ad) *Ad = a->A;
339621e72a00SBarry Smith   if (Ao) *Ao = a->B;
339721e72a00SBarry Smith   if (colmap) *colmap = a->garray;
33983ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3399f2a5309cSSatish Balay }
340085535b8eSBarry Smith 
340185535b8eSBarry Smith /*
340285535b8eSBarry Smith     Special version for direct calls from Fortran (to eliminate two function call overheads
340385535b8eSBarry Smith */
340485535b8eSBarry Smith #if defined(PETSC_HAVE_FORTRAN_CAPS)
340585535b8eSBarry Smith   #define matmpibaijsetvaluesblocked_ MATMPIBAIJSETVALUESBLOCKED
340685535b8eSBarry Smith #elif !defined(PETSC_HAVE_FORTRAN_UNDERSCORE)
340785535b8eSBarry Smith   #define matmpibaijsetvaluesblocked_ matmpibaijsetvaluesblocked
340885535b8eSBarry Smith #endif
340985535b8eSBarry Smith 
34102920cce0SJacob Faibussowitsch // PetscClangLinter pragma disable: -fdoc-synopsis-matching-symbol-name
341185535b8eSBarry Smith /*@C
341211a5261eSBarry Smith   MatMPIBAIJSetValuesBlocked - Direct Fortran call to replace call to `MatSetValuesBlocked()`
341385535b8eSBarry Smith 
3414c3339decSBarry Smith   Collective
341585535b8eSBarry Smith 
341685535b8eSBarry Smith   Input Parameters:
3417fe59aa6dSJacob Faibussowitsch + matin  - the matrix
341885535b8eSBarry Smith . min    - number of input rows
341985535b8eSBarry Smith . im     - input rows
342085535b8eSBarry Smith . nin    - number of input columns
342185535b8eSBarry Smith . in     - input columns
342285535b8eSBarry Smith . v      - numerical values input
342311a5261eSBarry Smith - addvin - `INSERT_VALUES` or `ADD_VALUES`
342485535b8eSBarry Smith 
342520f4b53cSBarry Smith   Level: advanced
342620f4b53cSBarry Smith 
3427fe59aa6dSJacob Faibussowitsch   Developer Notes:
342811a5261eSBarry Smith   This has a complete copy of `MatSetValuesBlocked_MPIBAIJ()` which is terrible code un-reuse.
342985535b8eSBarry Smith 
343067be906fSBarry Smith .seealso: `Mat`, `MatSetValuesBlocked()`
343185535b8eSBarry Smith @*/
343266976f2fSJacob Faibussowitsch PETSC_EXTERN PetscErrorCode matmpibaijsetvaluesblocked_(Mat *matin, PetscInt *min, const PetscInt im[], PetscInt *nin, const PetscInt in[], const MatScalar v[], InsertMode *addvin)
3433d71ae5a4SJacob Faibussowitsch {
343485535b8eSBarry Smith   /* convert input arguments to C version */
343585535b8eSBarry Smith   Mat        mat = *matin;
343685535b8eSBarry Smith   PetscInt   m = *min, n = *nin;
343785535b8eSBarry Smith   InsertMode addv = *addvin;
343885535b8eSBarry Smith 
343985535b8eSBarry Smith   Mat_MPIBAIJ     *baij = (Mat_MPIBAIJ *)mat->data;
344085535b8eSBarry Smith   const MatScalar *value;
344185535b8eSBarry Smith   MatScalar       *barray      = baij->barray;
3442ace3abfcSBarry Smith   PetscBool        roworiented = baij->roworiented;
344385535b8eSBarry Smith   PetscInt         i, j, ii, jj, row, col, rstart = baij->rstartbs;
344485535b8eSBarry Smith   PetscInt         rend = baij->rendbs, cstart = baij->cstartbs, stepval;
3445d0f46423SBarry Smith   PetscInt         cend = baij->cendbs, bs = mat->rmap->bs, bs2 = baij->bs2;
344685535b8eSBarry Smith 
344785535b8eSBarry Smith   PetscFunctionBegin;
344885535b8eSBarry Smith   /* tasks normally handled by MatSetValuesBlocked() */
344926fbe8dcSKarl Rupp   if (mat->insertmode == NOT_SET_VALUES) mat->insertmode = addv;
34505f80ce2aSJacob Faibussowitsch   else PetscCheck(mat->insertmode == addv, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Cannot mix add values and insert values");
34515f80ce2aSJacob Faibussowitsch   PetscCheck(!mat->factortype, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Not for factored matrix");
345285535b8eSBarry Smith   if (mat->assembled) {
345385535b8eSBarry Smith     mat->was_assembled = PETSC_TRUE;
345485535b8eSBarry Smith     mat->assembled     = PETSC_FALSE;
345585535b8eSBarry Smith   }
34569566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(MAT_SetValues, mat, 0, 0, 0));
345785535b8eSBarry Smith 
345885535b8eSBarry Smith   if (!barray) {
34599566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(bs2, &barray));
346085535b8eSBarry Smith     baij->barray = barray;
346185535b8eSBarry Smith   }
346285535b8eSBarry Smith 
346326fbe8dcSKarl Rupp   if (roworiented) stepval = (n - 1) * bs;
346426fbe8dcSKarl Rupp   else stepval = (m - 1) * bs;
346526fbe8dcSKarl Rupp 
346685535b8eSBarry Smith   for (i = 0; i < m; i++) {
346785535b8eSBarry Smith     if (im[i] < 0) continue;
34686bdcaf15SBarry Smith     PetscCheck(im[i] < baij->Mbs, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large, row %" PetscInt_FMT " max %" PetscInt_FMT, im[i], baij->Mbs - 1);
346985535b8eSBarry Smith     if (im[i] >= rstart && im[i] < rend) {
347085535b8eSBarry Smith       row = im[i] - rstart;
347185535b8eSBarry Smith       for (j = 0; j < n; j++) {
347285535b8eSBarry Smith         /* If NumCol = 1 then a copy is not required */
347385535b8eSBarry Smith         if ((roworiented) && (n == 1)) {
347485535b8eSBarry Smith           barray = (MatScalar *)v + i * bs2;
347585535b8eSBarry Smith         } else if ((!roworiented) && (m == 1)) {
347685535b8eSBarry Smith           barray = (MatScalar *)v + j * bs2;
347785535b8eSBarry Smith         } else { /* Here a copy is required */
347885535b8eSBarry Smith           if (roworiented) {
347985535b8eSBarry Smith             value = v + i * (stepval + bs) * bs + j * bs;
348085535b8eSBarry Smith           } else {
348185535b8eSBarry Smith             value = v + j * (stepval + bs) * bs + i * bs;
348285535b8eSBarry Smith           }
348385535b8eSBarry Smith           for (ii = 0; ii < bs; ii++, value += stepval) {
3484ad540459SPierre Jolivet             for (jj = 0; jj < bs; jj++) *barray++ = *value++;
348585535b8eSBarry Smith           }
348685535b8eSBarry Smith           barray -= bs2;
348785535b8eSBarry Smith         }
348885535b8eSBarry Smith 
348985535b8eSBarry Smith         if (in[j] >= cstart && in[j] < cend) {
349085535b8eSBarry Smith           col = in[j] - cstart;
34919566063dSJacob Faibussowitsch           PetscCall(MatSetValuesBlocked_SeqBAIJ_Inlined(baij->A, row, col, barray, addv, im[i], in[j]));
3492f7d195e4SLawrence Mitchell         } else if (in[j] < 0) {
3493f7d195e4SLawrence Mitchell           continue;
3494f7d195e4SLawrence Mitchell         } else {
3495f7d195e4SLawrence Mitchell           PetscCheck(in[j] < baij->Nbs, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large, col %" PetscInt_FMT " max %" PetscInt_FMT, in[j], baij->Nbs - 1);
349685535b8eSBarry Smith           if (mat->was_assembled) {
349748a46eb9SPierre Jolivet             if (!baij->colmap) PetscCall(MatCreateColmap_MPIBAIJ_Private(mat));
349885535b8eSBarry Smith 
349985535b8eSBarry Smith #if defined(PETSC_USE_DEBUG)
350085535b8eSBarry Smith   #if defined(PETSC_USE_CTABLE)
35019371c9d4SSatish Balay             {
35029371c9d4SSatish Balay               PetscInt data;
3503eec179cfSJacob Faibussowitsch               PetscCall(PetscHMapIGetWithDefault(baij->colmap, in[j] + 1, 0, &data));
350408401ef6SPierre Jolivet               PetscCheck((data - 1) % bs == 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Incorrect colmap");
350585535b8eSBarry Smith             }
350685535b8eSBarry Smith   #else
350708401ef6SPierre Jolivet             PetscCheck((baij->colmap[in[j]] - 1) % bs == 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Incorrect colmap");
350885535b8eSBarry Smith   #endif
350985535b8eSBarry Smith #endif
351085535b8eSBarry Smith #if defined(PETSC_USE_CTABLE)
3511eec179cfSJacob Faibussowitsch             PetscCall(PetscHMapIGetWithDefault(baij->colmap, in[j] + 1, 0, &col));
351285535b8eSBarry Smith             col = (col - 1) / bs;
351385535b8eSBarry Smith #else
351485535b8eSBarry Smith             col = (baij->colmap[in[j]] - 1) / bs;
351585535b8eSBarry Smith #endif
3516f4f49eeaSPierre Jolivet             if (col < 0 && !((Mat_SeqBAIJ *)baij->A->data)->nonew) {
35179566063dSJacob Faibussowitsch               PetscCall(MatDisAssemble_MPIBAIJ(mat));
351885535b8eSBarry Smith               col = in[j];
351985535b8eSBarry Smith             }
352026fbe8dcSKarl Rupp           } else col = in[j];
35219566063dSJacob Faibussowitsch           PetscCall(MatSetValuesBlocked_SeqBAIJ_Inlined(baij->B, row, col, barray, addv, im[i], in[j]));
352285535b8eSBarry Smith         }
352385535b8eSBarry Smith       }
352485535b8eSBarry Smith     } else {
352585535b8eSBarry Smith       if (!baij->donotstash) {
352685535b8eSBarry Smith         if (roworiented) {
35279566063dSJacob Faibussowitsch           PetscCall(MatStashValuesRowBlocked_Private(&mat->bstash, im[i], n, in, v, m, n, i));
352885535b8eSBarry Smith         } else {
35299566063dSJacob Faibussowitsch           PetscCall(MatStashValuesColBlocked_Private(&mat->bstash, im[i], n, in, v, m, n, i));
353085535b8eSBarry Smith         }
353185535b8eSBarry Smith       }
353285535b8eSBarry Smith     }
353385535b8eSBarry Smith   }
353485535b8eSBarry Smith 
353585535b8eSBarry Smith   /* task normally handled by MatSetValuesBlocked() */
35369566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(MAT_SetValues, mat, 0, 0, 0));
35373ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
353885535b8eSBarry Smith }
3539dfb205c3SBarry Smith 
3540dfb205c3SBarry Smith /*@
3541d8a51d2aSBarry Smith   MatCreateMPIBAIJWithArrays - creates a `MATMPIBAIJ` matrix using arrays that contain in standard block CSR format for the local rows.
3542dfb205c3SBarry Smith 
3543d083f849SBarry Smith   Collective
3544dfb205c3SBarry Smith 
3545dfb205c3SBarry Smith   Input Parameters:
3546dfb205c3SBarry Smith + comm - MPI communicator
3547dfb205c3SBarry Smith . bs   - the block size, only a block size of 1 is supported
354811a5261eSBarry Smith . m    - number of local rows (Cannot be `PETSC_DECIDE`)
3549dfb205c3SBarry Smith . n    - This value should be the same as the local size used in creating the
3550d8a51d2aSBarry Smith          x vector for the matrix-vector product $ y = Ax $. (or `PETSC_DECIDE` to have
3551d8a51d2aSBarry Smith          calculated if `N` is given) For square matrices `n` is almost always `m`.
3552d8a51d2aSBarry Smith . M    - number of global rows (or `PETSC_DETERMINE` to have calculated if `m` is given)
3553d8a51d2aSBarry Smith . N    - number of global columns (or `PETSC_DETERMINE` to have calculated if `n` is given)
3554483a2f95SBarry Smith . i    - row indices; that is i[0] = 0, i[row] = i[row-1] + number of block elements in that rowth block row of the matrix
3555dfb205c3SBarry Smith . j    - column indices
3556dfb205c3SBarry Smith - a    - matrix values
3557dfb205c3SBarry Smith 
3558dfb205c3SBarry Smith   Output Parameter:
3559dfb205c3SBarry Smith . mat - the matrix
3560dfb205c3SBarry Smith 
3561dfb205c3SBarry Smith   Level: intermediate
3562dfb205c3SBarry Smith 
3563dfb205c3SBarry Smith   Notes:
356467be906fSBarry Smith   The `i`, `j`, and `a` arrays ARE copied by this routine into the internal format used by PETSc;
3565dfb205c3SBarry Smith   thus you CANNOT change the matrix entries by changing the values of a[] after you have
356611a5261eSBarry Smith   called this routine. Use `MatCreateMPIAIJWithSplitArrays()` to avoid needing to copy the arrays.
3567dfb205c3SBarry Smith 
35683adadaf3SJed Brown   The order of the entries in values is the same as the block compressed sparse row storage format; that is, it is
35693adadaf3SJed Brown   the same as a three dimensional array in Fortran values(bs,bs,nnz) that contains the first column of the first
35703adadaf3SJed Brown   block, followed by the second column of the first block etc etc.  That is, the blocks are contiguous in memory
35713adadaf3SJed Brown   with column-major ordering within blocks.
35723adadaf3SJed Brown 
3573d8a51d2aSBarry Smith   The `i` and `j` indices are 0 based, and `i` indices are indices corresponding to the local `j` array.
3574dfb205c3SBarry Smith 
357567be906fSBarry Smith .seealso: `Mat`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`,
35767d2c085eSPierre Jolivet           `MATMPIAIJ`, `MatCreateAIJ()`, `MatCreateMPIAIJWithSplitArrays()`
3577dfb205c3SBarry Smith @*/
3578d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIBAIJWithArrays(MPI_Comm comm, PetscInt bs, PetscInt m, PetscInt n, PetscInt M, PetscInt N, const PetscInt i[], const PetscInt j[], const PetscScalar a[], Mat *mat)
3579d71ae5a4SJacob Faibussowitsch {
3580dfb205c3SBarry Smith   PetscFunctionBegin;
35815f80ce2aSJacob Faibussowitsch   PetscCheck(!i[0], PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "i (row indices) must start with 0");
35825f80ce2aSJacob Faibussowitsch   PetscCheck(m >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "local number of rows (m) cannot be PETSC_DECIDE, or negative");
35839566063dSJacob Faibussowitsch   PetscCall(MatCreate(comm, mat));
35849566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(*mat, m, n, M, N));
35859566063dSJacob Faibussowitsch   PetscCall(MatSetType(*mat, MATMPIBAIJ));
35869566063dSJacob Faibussowitsch   PetscCall(MatSetBlockSize(*mat, bs));
35879566063dSJacob Faibussowitsch   PetscCall(MatSetUp(*mat));
35889566063dSJacob Faibussowitsch   PetscCall(MatSetOption(*mat, MAT_ROW_ORIENTED, PETSC_FALSE));
35899566063dSJacob Faibussowitsch   PetscCall(MatMPIBAIJSetPreallocationCSR(*mat, bs, i, j, a));
35909566063dSJacob Faibussowitsch   PetscCall(MatSetOption(*mat, MAT_ROW_ORIENTED, PETSC_TRUE));
35913ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3592dfb205c3SBarry Smith }
3593e561ad89SHong Zhang 
3594d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIMatConcatenateSeqMat_MPIBAIJ(MPI_Comm comm, Mat inmat, PetscInt n, MatReuse scall, Mat *outmat)
3595d71ae5a4SJacob Faibussowitsch {
3596bd153df0SHong Zhang   PetscInt     m, N, i, rstart, nnz, Ii, bs, cbs;
3597bd153df0SHong Zhang   PetscInt    *indx;
3598bd153df0SHong Zhang   PetscScalar *values;
3599e561ad89SHong Zhang 
3600e561ad89SHong Zhang   PetscFunctionBegin;
36019566063dSJacob Faibussowitsch   PetscCall(MatGetSize(inmat, &m, &N));
3602bd153df0SHong Zhang   if (scall == MAT_INITIAL_MATRIX) { /* symbolic phase */
3603bd153df0SHong Zhang     Mat_SeqBAIJ *a = (Mat_SeqBAIJ *)inmat->data;
36042c6ba4edSHong Zhang     PetscInt    *dnz, *onz, mbs, Nbs, nbs;
3605bd153df0SHong Zhang     PetscInt    *bindx, rmax = a->rmax, j;
360677f764caSHong Zhang     PetscMPIInt  rank, size;
3607e561ad89SHong Zhang 
36089566063dSJacob Faibussowitsch     PetscCall(MatGetBlockSizes(inmat, &bs, &cbs));
36099371c9d4SSatish Balay     mbs = m / bs;
36109371c9d4SSatish Balay     Nbs = N / cbs;
361148a46eb9SPierre Jolivet     if (n == PETSC_DECIDE) PetscCall(PetscSplitOwnershipBlock(comm, cbs, &n, &N));
3612da91a574SPierre Jolivet     nbs = n / cbs;
3613e561ad89SHong Zhang 
36149566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(rmax, &bindx));
3615d0609cedSBarry Smith     MatPreallocateBegin(comm, mbs, nbs, dnz, onz); /* inline function, output __end and __rstart are used below */
361677f764caSHong Zhang 
36179566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Comm_rank(comm, &rank));
3618*badd099fSHan Liu     PetscCallMPI(MPI_Comm_size(comm, &size));
361977f764caSHong Zhang     if (rank == size - 1) {
362077f764caSHong Zhang       /* Check sum(nbs) = Nbs */
36215f80ce2aSJacob Faibussowitsch       PetscCheck(__end == Nbs, PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "Sum of local block columns %" PetscInt_FMT " != global block columns %" PetscInt_FMT, __end, Nbs);
362277f764caSHong Zhang     }
362377f764caSHong Zhang 
3624d0609cedSBarry Smith     rstart = __rstart; /* block rstart of *outmat; see inline function MatPreallocateBegin */
3625bd153df0SHong Zhang     for (i = 0; i < mbs; i++) {
36269566063dSJacob Faibussowitsch       PetscCall(MatGetRow_SeqBAIJ(inmat, i * bs, &nnz, &indx, NULL)); /* non-blocked nnz and indx */
3627647a6520SHong Zhang       nnz = nnz / bs;
3628647a6520SHong Zhang       for (j = 0; j < nnz; j++) bindx[j] = indx[j * bs] / bs;
36299566063dSJacob Faibussowitsch       PetscCall(MatPreallocateSet(i + rstart, nnz, bindx, dnz, onz));
36309566063dSJacob Faibussowitsch       PetscCall(MatRestoreRow_SeqBAIJ(inmat, i * bs, &nnz, &indx, NULL));
3631e561ad89SHong Zhang     }
36329566063dSJacob Faibussowitsch     PetscCall(PetscFree(bindx));
3633e561ad89SHong Zhang 
36349566063dSJacob Faibussowitsch     PetscCall(MatCreate(comm, outmat));
36359566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(*outmat, m, n, PETSC_DETERMINE, PETSC_DETERMINE));
36369566063dSJacob Faibussowitsch     PetscCall(MatSetBlockSizes(*outmat, bs, cbs));
36379566063dSJacob Faibussowitsch     PetscCall(MatSetType(*outmat, MATBAIJ));
36389566063dSJacob Faibussowitsch     PetscCall(MatSeqBAIJSetPreallocation(*outmat, bs, 0, dnz));
36399566063dSJacob Faibussowitsch     PetscCall(MatMPIBAIJSetPreallocation(*outmat, bs, 0, dnz, 0, onz));
3640d0609cedSBarry Smith     MatPreallocateEnd(dnz, onz);
36419566063dSJacob Faibussowitsch     PetscCall(MatSetOption(*outmat, MAT_NO_OFF_PROC_ENTRIES, PETSC_TRUE));
3642e561ad89SHong Zhang   }
3643e561ad89SHong Zhang 
3644bd153df0SHong Zhang   /* numeric phase */
36459566063dSJacob Faibussowitsch   PetscCall(MatGetBlockSizes(inmat, &bs, &cbs));
36469566063dSJacob Faibussowitsch   PetscCall(MatGetOwnershipRange(*outmat, &rstart, NULL));
3647e561ad89SHong Zhang 
3648e561ad89SHong Zhang   for (i = 0; i < m; i++) {
36499566063dSJacob Faibussowitsch     PetscCall(MatGetRow_SeqBAIJ(inmat, i, &nnz, &indx, &values));
3650e561ad89SHong Zhang     Ii = i + rstart;
36519566063dSJacob Faibussowitsch     PetscCall(MatSetValues(*outmat, 1, &Ii, nnz, indx, values, INSERT_VALUES));
36529566063dSJacob Faibussowitsch     PetscCall(MatRestoreRow_SeqBAIJ(inmat, i, &nnz, &indx, &values));
3653e561ad89SHong Zhang   }
36549566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(*outmat, MAT_FINAL_ASSEMBLY));
36559566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(*outmat, MAT_FINAL_ASSEMBLY));
36563ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3657e561ad89SHong Zhang }
3658