1c6db04a5SJed Brown #include <../src/mat/impls/baij/mpi/mpibaij.h> /*I "petscmat.h" I*/ 2c5d9258eSSatish Balay 3b51a4376SLisandro Dalcin #include <petsc/private/hashseti.h> 4c6db04a5SJed Brown #include <petscblaslapack.h> 565a92638SMatthew G. Knepley #include <petscsf.h> 679bdfe76SSatish Balay 766976f2fSJacob Faibussowitsch static PetscErrorCode MatDestroy_MPIBAIJ(Mat mat) 826cec326SBarry Smith { 926cec326SBarry Smith Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 1026cec326SBarry Smith 1126cec326SBarry Smith PetscFunctionBegin; 1226cec326SBarry Smith PetscCall(PetscLogObjectState((PetscObject)mat, "Rows=%" PetscInt_FMT ",Cols=%" PetscInt_FMT, mat->rmap->N, mat->cmap->N)); 1326cec326SBarry Smith PetscCall(MatStashDestroy_Private(&mat->stash)); 1426cec326SBarry Smith PetscCall(MatStashDestroy_Private(&mat->bstash)); 1526cec326SBarry Smith PetscCall(MatDestroy(&baij->A)); 1626cec326SBarry Smith PetscCall(MatDestroy(&baij->B)); 1726cec326SBarry Smith #if defined(PETSC_USE_CTABLE) 1826cec326SBarry Smith PetscCall(PetscHMapIDestroy(&baij->colmap)); 1926cec326SBarry Smith #else 2026cec326SBarry Smith PetscCall(PetscFree(baij->colmap)); 2126cec326SBarry Smith #endif 2226cec326SBarry Smith PetscCall(PetscFree(baij->garray)); 2326cec326SBarry Smith PetscCall(VecDestroy(&baij->lvec)); 2426cec326SBarry Smith PetscCall(VecScatterDestroy(&baij->Mvctx)); 2526cec326SBarry Smith PetscCall(PetscFree2(baij->rowvalues, baij->rowindices)); 2626cec326SBarry Smith PetscCall(PetscFree(baij->barray)); 2726cec326SBarry Smith PetscCall(PetscFree2(baij->hd, baij->ht)); 2826cec326SBarry Smith PetscCall(PetscFree(baij->rangebs)); 2926cec326SBarry Smith PetscCall(PetscFree(mat->data)); 3026cec326SBarry Smith 3126cec326SBarry Smith PetscCall(PetscObjectChangeTypeName((PetscObject)mat, NULL)); 3226cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatStoreValues_C", NULL)); 3326cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatRetrieveValues_C", NULL)); 3426cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMPIBAIJSetPreallocation_C", NULL)); 3526cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMPIBAIJSetPreallocationCSR_C", NULL)); 3626cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDiagonalScaleLocal_C", NULL)); 3726cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatSetHashTableFactor_C", NULL)); 3826cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpibaij_mpisbaij_C", NULL)); 3926cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpibaij_mpiadj_C", NULL)); 4026cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpibaij_mpiaij_C", NULL)); 4126cec326SBarry Smith #if defined(PETSC_HAVE_HYPRE) 4226cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpibaij_hypre_C", NULL)); 4326cec326SBarry Smith #endif 4426cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpibaij_is_C", NULL)); 4526cec326SBarry Smith PetscFunctionReturn(PETSC_SUCCESS); 4626cec326SBarry Smith } 4726cec326SBarry Smith 4826cec326SBarry Smith /* defines MatSetValues_MPI_Hash(), MatAssemblyBegin_MPI_Hash(), and MatAssemblyEnd_MPI_Hash() */ 4926cec326SBarry Smith #define TYPE BAIJ 5026cec326SBarry Smith #include "../src/mat/impls/aij/mpi/mpihashmat.h" 5126cec326SBarry Smith #undef TYPE 5226cec326SBarry Smith 537ea3e4caSstefano_zampini #if defined(PETSC_HAVE_HYPRE) 547ea3e4caSstefano_zampini PETSC_INTERN PetscErrorCode MatConvert_AIJ_HYPRE(Mat, MatType, MatReuse, Mat *); 557ea3e4caSstefano_zampini #endif 567ea3e4caSstefano_zampini 5766976f2fSJacob Faibussowitsch static PetscErrorCode MatGetRowMaxAbs_MPIBAIJ(Mat A, Vec v, PetscInt idx[]) 58d71ae5a4SJacob Faibussowitsch { 597843d17aSBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 604e879edeSHong Zhang PetscInt i, *idxb = NULL, m = A->rmap->n, bs = A->cmap->bs; 61db161fc6SPierre Jolivet PetscScalar *vv; 624e879edeSHong Zhang Vec vB, vA; 63db161fc6SPierre Jolivet const PetscScalar *va, *vb; 647843d17aSBarry Smith 657843d17aSBarry Smith PetscFunctionBegin; 66c7b600bfSPierre Jolivet PetscCall(MatCreateVecs(a->A, NULL, &vA)); 679566063dSJacob Faibussowitsch PetscCall(MatGetRowMaxAbs(a->A, vA, idx)); 684e879edeSHong Zhang 69db161fc6SPierre Jolivet PetscCall(VecGetArrayRead(vA, &va)); 70985db425SBarry Smith if (idx) { 714e879edeSHong Zhang for (i = 0; i < m; i++) { 7226fbe8dcSKarl Rupp if (PetscAbsScalar(va[i])) idx[i] += A->cmap->rstart; 7326fbe8dcSKarl Rupp } 74985db425SBarry Smith } 757843d17aSBarry Smith 76c7b600bfSPierre Jolivet PetscCall(MatCreateVecs(a->B, NULL, &vB)); 779566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m, &idxb)); 789566063dSJacob Faibussowitsch PetscCall(MatGetRowMaxAbs(a->B, vB, idxb)); 797843d17aSBarry Smith 809566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(v, &vv)); 819566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(vB, &vb)); 824e879edeSHong Zhang for (i = 0; i < m; i++) { 8326fbe8dcSKarl Rupp if (PetscAbsScalar(va[i]) < PetscAbsScalar(vb[i])) { 844e879edeSHong Zhang vv[i] = vb[i]; 854e879edeSHong Zhang if (idx) idx[i] = bs * a->garray[idxb[i] / bs] + (idxb[i] % bs); 864e879edeSHong Zhang } else { 874e879edeSHong Zhang vv[i] = va[i]; 889371c9d4SSatish Balay if (idx && PetscAbsScalar(va[i]) == PetscAbsScalar(vb[i]) && idxb[i] != -1 && idx[i] > bs * a->garray[idxb[i] / bs] + (idxb[i] % bs)) idx[i] = bs * a->garray[idxb[i] / bs] + (idxb[i] % bs); 8926fbe8dcSKarl Rupp } 907843d17aSBarry Smith } 91db161fc6SPierre Jolivet PetscCall(VecRestoreArrayWrite(v, &vv)); 92db161fc6SPierre Jolivet PetscCall(VecRestoreArrayRead(vA, &va)); 939566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(vB, &vb)); 949566063dSJacob Faibussowitsch PetscCall(PetscFree(idxb)); 959566063dSJacob Faibussowitsch PetscCall(VecDestroy(&vA)); 969566063dSJacob Faibussowitsch PetscCall(VecDestroy(&vB)); 973ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 987843d17aSBarry Smith } 997843d17aSBarry Smith 100c7b600bfSPierre Jolivet static PetscErrorCode MatGetRowSumAbs_MPIBAIJ(Mat A, Vec v) 101c7b600bfSPierre Jolivet { 102c7b600bfSPierre Jolivet Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 103c7b600bfSPierre Jolivet Vec vB, vA; 104c7b600bfSPierre Jolivet 105c7b600bfSPierre Jolivet PetscFunctionBegin; 106c7b600bfSPierre Jolivet PetscCall(MatCreateVecs(a->A, NULL, &vA)); 107c7b600bfSPierre Jolivet PetscCall(MatGetRowSumAbs(a->A, vA)); 108c7b600bfSPierre Jolivet PetscCall(MatCreateVecs(a->B, NULL, &vB)); 109c7b600bfSPierre Jolivet PetscCall(MatGetRowSumAbs(a->B, vB)); 110c7b600bfSPierre Jolivet PetscCall(VecAXPY(vA, 1.0, vB)); 111c7b600bfSPierre Jolivet PetscCall(VecDestroy(&vB)); 112c7b600bfSPierre Jolivet PetscCall(VecCopy(vA, v)); 113c7b600bfSPierre Jolivet PetscCall(VecDestroy(&vA)); 114c7b600bfSPierre Jolivet PetscFunctionReturn(PETSC_SUCCESS); 115c7b600bfSPierre Jolivet } 116c7b600bfSPierre Jolivet 11766976f2fSJacob Faibussowitsch static PetscErrorCode MatStoreValues_MPIBAIJ(Mat mat) 118d71ae5a4SJacob Faibussowitsch { 1197fc3c18eSBarry Smith Mat_MPIBAIJ *aij = (Mat_MPIBAIJ *)mat->data; 1207fc3c18eSBarry Smith 1217fc3c18eSBarry Smith PetscFunctionBegin; 1229566063dSJacob Faibussowitsch PetscCall(MatStoreValues(aij->A)); 1239566063dSJacob Faibussowitsch PetscCall(MatStoreValues(aij->B)); 1243ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1257fc3c18eSBarry Smith } 1267fc3c18eSBarry Smith 12766976f2fSJacob Faibussowitsch static PetscErrorCode MatRetrieveValues_MPIBAIJ(Mat mat) 128d71ae5a4SJacob Faibussowitsch { 1297fc3c18eSBarry Smith Mat_MPIBAIJ *aij = (Mat_MPIBAIJ *)mat->data; 1307fc3c18eSBarry Smith 1317fc3c18eSBarry Smith PetscFunctionBegin; 1329566063dSJacob Faibussowitsch PetscCall(MatRetrieveValues(aij->A)); 1339566063dSJacob Faibussowitsch PetscCall(MatRetrieveValues(aij->B)); 1343ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1357fc3c18eSBarry Smith } 1367fc3c18eSBarry Smith 137537820f0SBarry Smith /* 138537820f0SBarry Smith Local utility routine that creates a mapping from the global column 13957b952d6SSatish Balay number to the local number in the off-diagonal part of the local 140e06f6af7SJed Brown storage of the matrix. This is done in a non scalable way since the 14157b952d6SSatish Balay length of colmap equals the global matrix length. 14257b952d6SSatish Balay */ 143d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateColmap_MPIBAIJ_Private(Mat mat) 144d71ae5a4SJacob Faibussowitsch { 14557b952d6SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 14657b952d6SSatish Balay Mat_SeqBAIJ *B = (Mat_SeqBAIJ *)baij->B->data; 147d0f46423SBarry Smith PetscInt nbs = B->nbs, i, bs = mat->rmap->bs; 14857b952d6SSatish Balay 149d64ed03dSBarry Smith PetscFunctionBegin; 150aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 151eec179cfSJacob Faibussowitsch PetscCall(PetscHMapICreateWithSize(baij->nbs, &baij->colmap)); 152c76ffc5fSJacob Faibussowitsch for (i = 0; i < nbs; i++) PetscCall(PetscHMapISet(baij->colmap, baij->garray[i] + 1, i * bs + 1)); 15348e59246SSatish Balay #else 1549566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(baij->Nbs + 1, &baij->colmap)); 155928fc39bSSatish Balay for (i = 0; i < nbs; i++) baij->colmap[baij->garray[i]] = i * bs + 1; 15648e59246SSatish Balay #endif 1573ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 15857b952d6SSatish Balay } 15957b952d6SSatish Balay 160d40312a9SBarry Smith #define MatSetValues_SeqBAIJ_A_Private(row, col, value, addv, orow, ocol) \ 161a8f51744SPierre Jolivet do { \ 16280c1aa95SSatish Balay brow = row / bs; \ 1638e3a54c0SPierre Jolivet rp = PetscSafePointerPlusOffset(aj, ai[brow]); \ 1648e3a54c0SPierre Jolivet ap = PetscSafePointerPlusOffset(aa, bs2 * ai[brow]); \ 1659371c9d4SSatish Balay rmax = aimax[brow]; \ 1669371c9d4SSatish Balay nrow = ailen[brow]; \ 16780c1aa95SSatish Balay bcol = col / bs; \ 1689371c9d4SSatish Balay ridx = row % bs; \ 1699371c9d4SSatish Balay cidx = col % bs; \ 1709371c9d4SSatish Balay low = 0; \ 1719371c9d4SSatish Balay high = nrow; \ 172ab26458aSBarry Smith while (high - low > 3) { \ 173ab26458aSBarry Smith t = (low + high) / 2; \ 174ab26458aSBarry Smith if (rp[t] > bcol) high = t; \ 175ab26458aSBarry Smith else low = t; \ 176ab26458aSBarry Smith } \ 177ab26458aSBarry Smith for (_i = low; _i < high; _i++) { \ 17880c1aa95SSatish Balay if (rp[_i] > bcol) break; \ 17980c1aa95SSatish Balay if (rp[_i] == bcol) { \ 18080c1aa95SSatish Balay bap = ap + bs2 * _i + bs * cidx + ridx; \ 181eada6651SSatish Balay if (addv == ADD_VALUES) *bap += value; \ 182eada6651SSatish Balay else *bap = value; \ 183ac7a638eSSatish Balay goto a_noinsert; \ 18480c1aa95SSatish Balay } \ 18580c1aa95SSatish Balay } \ 18689280ab3SLois Curfman McInnes if (a->nonew == 1) goto a_noinsert; \ 1875f80ce2aSJacob Faibussowitsch PetscCheck(a->nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", orow, ocol); \ 188fef13f97SBarry Smith MatSeqXAIJReallocateAIJ(A, a->mbs, bs2, nrow, brow, bcol, rmax, aa, ai, aj, rp, ap, aimax, a->nonew, MatScalar); \ 18980c1aa95SSatish Balay N = nrow++ - 1; \ 19080c1aa95SSatish Balay /* shift up all the later entries in this row */ \ 1919566063dSJacob Faibussowitsch PetscCall(PetscArraymove(rp + _i + 1, rp + _i, N - _i + 1)); \ 1929566063dSJacob Faibussowitsch PetscCall(PetscArraymove(ap + bs2 * (_i + 1), ap + bs2 * _i, bs2 * (N - _i + 1))); \ 1939566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(ap + bs2 * _i, bs2)); \ 19480c1aa95SSatish Balay rp[_i] = bcol; \ 19580c1aa95SSatish Balay ap[bs2 * _i + bs * cidx + ridx] = value; \ 196ac7a638eSSatish Balay a_noinsert:; \ 19780c1aa95SSatish Balay ailen[brow] = nrow; \ 198a8f51744SPierre Jolivet } while (0) 19957b952d6SSatish Balay 200d40312a9SBarry Smith #define MatSetValues_SeqBAIJ_B_Private(row, col, value, addv, orow, ocol) \ 201a8f51744SPierre Jolivet do { \ 202ac7a638eSSatish Balay brow = row / bs; \ 2038e3a54c0SPierre Jolivet rp = PetscSafePointerPlusOffset(bj, bi[brow]); \ 2048e3a54c0SPierre Jolivet ap = PetscSafePointerPlusOffset(ba, bs2 * bi[brow]); \ 2059371c9d4SSatish Balay rmax = bimax[brow]; \ 2069371c9d4SSatish Balay nrow = bilen[brow]; \ 207ac7a638eSSatish Balay bcol = col / bs; \ 2089371c9d4SSatish Balay ridx = row % bs; \ 2099371c9d4SSatish Balay cidx = col % bs; \ 2109371c9d4SSatish Balay low = 0; \ 2119371c9d4SSatish Balay high = nrow; \ 212ac7a638eSSatish Balay while (high - low > 3) { \ 213ac7a638eSSatish Balay t = (low + high) / 2; \ 214ac7a638eSSatish Balay if (rp[t] > bcol) high = t; \ 215ac7a638eSSatish Balay else low = t; \ 216ac7a638eSSatish Balay } \ 217ac7a638eSSatish Balay for (_i = low; _i < high; _i++) { \ 218ac7a638eSSatish Balay if (rp[_i] > bcol) break; \ 219ac7a638eSSatish Balay if (rp[_i] == bcol) { \ 220ac7a638eSSatish Balay bap = ap + bs2 * _i + bs * cidx + ridx; \ 221ac7a638eSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 222ac7a638eSSatish Balay else *bap = value; \ 223ac7a638eSSatish Balay goto b_noinsert; \ 224ac7a638eSSatish Balay } \ 225ac7a638eSSatish Balay } \ 22689280ab3SLois Curfman McInnes if (b->nonew == 1) goto b_noinsert; \ 2275f80ce2aSJacob Faibussowitsch PetscCheck(b->nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", orow, ocol); \ 228fef13f97SBarry Smith MatSeqXAIJReallocateAIJ(B, b->mbs, bs2, nrow, brow, bcol, rmax, ba, bi, bj, rp, ap, bimax, b->nonew, MatScalar); \ 229ac7a638eSSatish Balay N = nrow++ - 1; \ 230ac7a638eSSatish Balay /* shift up all the later entries in this row */ \ 2319566063dSJacob Faibussowitsch PetscCall(PetscArraymove(rp + _i + 1, rp + _i, N - _i + 1)); \ 2329566063dSJacob Faibussowitsch PetscCall(PetscArraymove(ap + bs2 * (_i + 1), ap + bs2 * _i, bs2 * (N - _i + 1))); \ 2339566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(ap + bs2 * _i, bs2)); \ 234ac7a638eSSatish Balay rp[_i] = bcol; \ 235ac7a638eSSatish Balay ap[bs2 * _i + bs * cidx + ridx] = value; \ 236ac7a638eSSatish Balay b_noinsert:; \ 237ac7a638eSSatish Balay bilen[brow] = nrow; \ 238a8f51744SPierre Jolivet } while (0) 239ac7a638eSSatish Balay 240d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetValues_MPIBAIJ(Mat mat, PetscInt m, const PetscInt im[], PetscInt n, const PetscInt in[], const PetscScalar v[], InsertMode addv) 241d71ae5a4SJacob Faibussowitsch { 24257b952d6SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 24393fea6afSBarry Smith MatScalar value; 244ace3abfcSBarry Smith PetscBool roworiented = baij->roworiented; 245b24ad042SBarry Smith PetscInt i, j, row, col; 246d0f46423SBarry Smith PetscInt rstart_orig = mat->rmap->rstart; 247d0f46423SBarry Smith PetscInt rend_orig = mat->rmap->rend, cstart_orig = mat->cmap->rstart; 248d0f46423SBarry Smith PetscInt cend_orig = mat->cmap->rend, bs = mat->rmap->bs; 24957b952d6SSatish Balay 250eada6651SSatish Balay /* Some Variables required in the macro */ 25180c1aa95SSatish Balay Mat A = baij->A; 25257508eceSPierre Jolivet Mat_SeqBAIJ *a = (Mat_SeqBAIJ *)A->data; 253b24ad042SBarry Smith PetscInt *aimax = a->imax, *ai = a->i, *ailen = a->ilen, *aj = a->j; 2543eda8832SBarry Smith MatScalar *aa = a->a; 255ac7a638eSSatish Balay 256ac7a638eSSatish Balay Mat B = baij->B; 25757508eceSPierre Jolivet Mat_SeqBAIJ *b = (Mat_SeqBAIJ *)B->data; 258b24ad042SBarry Smith PetscInt *bimax = b->imax, *bi = b->i, *bilen = b->ilen, *bj = b->j; 2593eda8832SBarry Smith MatScalar *ba = b->a; 260ac7a638eSSatish Balay 261b24ad042SBarry Smith PetscInt *rp, ii, nrow, _i, rmax, N, brow, bcol; 262b24ad042SBarry Smith PetscInt low, high, t, ridx, cidx, bs2 = a->bs2; 2633eda8832SBarry Smith MatScalar *ap, *bap; 26480c1aa95SSatish Balay 265d64ed03dSBarry Smith PetscFunctionBegin; 26657b952d6SSatish Balay for (i = 0; i < m; i++) { 2675ef9f2a5SBarry Smith if (im[i] < 0) continue; 2685f80ce2aSJacob Faibussowitsch PetscCheck(im[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, im[i], mat->rmap->N - 1); 26957b952d6SSatish Balay if (im[i] >= rstart_orig && im[i] < rend_orig) { 27057b952d6SSatish Balay row = im[i] - rstart_orig; 27157b952d6SSatish Balay for (j = 0; j < n; j++) { 27257b952d6SSatish Balay if (in[j] >= cstart_orig && in[j] < cend_orig) { 27357b952d6SSatish Balay col = in[j] - cstart_orig; 274db4deed7SKarl Rupp if (roworiented) value = v[i * n + j]; 275db4deed7SKarl Rupp else value = v[i + j * m]; 276d40312a9SBarry Smith MatSetValues_SeqBAIJ_A_Private(row, col, value, addv, im[i], in[j]); 277f7d195e4SLawrence Mitchell } else if (in[j] < 0) { 278f7d195e4SLawrence Mitchell continue; 279f7d195e4SLawrence Mitchell } else { 280f7d195e4SLawrence Mitchell PetscCheck(in[j] < mat->cmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, in[j], mat->cmap->N - 1); 28157b952d6SSatish Balay if (mat->was_assembled) { 28248a46eb9SPierre Jolivet if (!baij->colmap) PetscCall(MatCreateColmap_MPIBAIJ_Private(mat)); 283aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 284eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIGetWithDefault(baij->colmap, in[j] / bs + 1, 0, &col)); 285bba1ac68SSatish Balay col = col - 1; 28648e59246SSatish Balay #else 287bba1ac68SSatish Balay col = baij->colmap[in[j] / bs] - 1; 28848e59246SSatish Balay #endif 289f4f49eeaSPierre Jolivet if (col < 0 && !((Mat_SeqBAIJ *)baij->B->data)->nonew) { 2909566063dSJacob Faibussowitsch PetscCall(MatDisAssemble_MPIBAIJ(mat)); 2918295de27SSatish Balay col = in[j]; 2929bf004c3SSatish Balay /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */ 2939bf004c3SSatish Balay B = baij->B; 29457508eceSPierre Jolivet b = (Mat_SeqBAIJ *)B->data; 2959371c9d4SSatish Balay bimax = b->imax; 2969371c9d4SSatish Balay bi = b->i; 2979371c9d4SSatish Balay bilen = b->ilen; 2989371c9d4SSatish Balay bj = b->j; 2999bf004c3SSatish Balay ba = b->a; 300f7d195e4SLawrence Mitchell } else { 301f7d195e4SLawrence Mitchell PetscCheck(col >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", im[i], in[j]); 302f7d195e4SLawrence Mitchell col += in[j] % bs; 303f7d195e4SLawrence Mitchell } 3048295de27SSatish Balay } else col = in[j]; 305db4deed7SKarl Rupp if (roworiented) value = v[i * n + j]; 306db4deed7SKarl Rupp else value = v[i + j * m]; 307d40312a9SBarry Smith MatSetValues_SeqBAIJ_B_Private(row, col, value, addv, im[i], in[j]); 3089566063dSJacob Faibussowitsch /* PetscCall(MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv)); */ 30957b952d6SSatish Balay } 31057b952d6SSatish Balay } 311d64ed03dSBarry Smith } else { 3125f80ce2aSJacob Faibussowitsch PetscCheck(!mat->nooffprocentries, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Setting off process row %" PetscInt_FMT " even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set", im[i]); 31390f02eecSBarry Smith if (!baij->donotstash) { 3145080c13bSMatthew G Knepley mat->assembled = PETSC_FALSE; 315ff2fd236SBarry Smith if (roworiented) { 3169566063dSJacob Faibussowitsch PetscCall(MatStashValuesRow_Private(&mat->stash, im[i], n, in, v + i * n, PETSC_FALSE)); 317ff2fd236SBarry Smith } else { 3189566063dSJacob Faibussowitsch PetscCall(MatStashValuesCol_Private(&mat->stash, im[i], n, in, v + i, m, PETSC_FALSE)); 31957b952d6SSatish Balay } 32057b952d6SSatish Balay } 32157b952d6SSatish Balay } 32290f02eecSBarry Smith } 3233ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 32457b952d6SSatish Balay } 32557b952d6SSatish Balay 326d71ae5a4SJacob Faibussowitsch static inline PetscErrorCode MatSetValuesBlocked_SeqBAIJ_Inlined(Mat A, PetscInt row, PetscInt col, const PetscScalar v[], InsertMode is, PetscInt orow, PetscInt ocol) 327d71ae5a4SJacob Faibussowitsch { 328880c6e6aSBarry Smith Mat_SeqBAIJ *a = (Mat_SeqBAIJ *)A->data; 3298ab52850SBarry Smith PetscInt *rp, low, high, t, ii, jj, nrow, i, rmax, N; 330880c6e6aSBarry Smith PetscInt *imax = a->imax, *ai = a->i, *ailen = a->ilen; 3318ab52850SBarry Smith PetscInt *aj = a->j, nonew = a->nonew, bs2 = a->bs2, bs = A->rmap->bs; 332880c6e6aSBarry Smith PetscBool roworiented = a->roworiented; 333880c6e6aSBarry Smith const PetscScalar *value = v; 334880c6e6aSBarry Smith MatScalar *ap, *aa = a->a, *bap; 335880c6e6aSBarry Smith 336880c6e6aSBarry Smith PetscFunctionBegin; 337880c6e6aSBarry Smith rp = aj + ai[row]; 338880c6e6aSBarry Smith ap = aa + bs2 * ai[row]; 339880c6e6aSBarry Smith rmax = imax[row]; 340880c6e6aSBarry Smith nrow = ailen[row]; 3418ab52850SBarry Smith value = v; 3428ab52850SBarry Smith low = 0; 3438ab52850SBarry Smith high = nrow; 344880c6e6aSBarry Smith while (high - low > 7) { 345880c6e6aSBarry Smith t = (low + high) / 2; 346880c6e6aSBarry Smith if (rp[t] > col) high = t; 347880c6e6aSBarry Smith else low = t; 348880c6e6aSBarry Smith } 349880c6e6aSBarry Smith for (i = low; i < high; i++) { 350880c6e6aSBarry Smith if (rp[i] > col) break; 351880c6e6aSBarry Smith if (rp[i] == col) { 352880c6e6aSBarry Smith bap = ap + bs2 * i; 353880c6e6aSBarry Smith if (roworiented) { 354880c6e6aSBarry Smith if (is == ADD_VALUES) { 3558ab52850SBarry Smith for (ii = 0; ii < bs; ii++) { 356ad540459SPierre Jolivet for (jj = ii; jj < bs2; jj += bs) bap[jj] += *value++; 357880c6e6aSBarry Smith } 358880c6e6aSBarry Smith } else { 3598ab52850SBarry Smith for (ii = 0; ii < bs; ii++) { 360ad540459SPierre Jolivet for (jj = ii; jj < bs2; jj += bs) bap[jj] = *value++; 361880c6e6aSBarry Smith } 362880c6e6aSBarry Smith } 363880c6e6aSBarry Smith } else { 364880c6e6aSBarry Smith if (is == ADD_VALUES) { 3658ab52850SBarry Smith for (ii = 0; ii < bs; ii++, value += bs) { 366ad540459SPierre Jolivet for (jj = 0; jj < bs; jj++) bap[jj] += value[jj]; 367880c6e6aSBarry Smith bap += bs; 368880c6e6aSBarry Smith } 369880c6e6aSBarry Smith } else { 3708ab52850SBarry Smith for (ii = 0; ii < bs; ii++, value += bs) { 371ad540459SPierre Jolivet for (jj = 0; jj < bs; jj++) bap[jj] = value[jj]; 372880c6e6aSBarry Smith bap += bs; 373880c6e6aSBarry Smith } 374880c6e6aSBarry Smith } 375880c6e6aSBarry Smith } 376880c6e6aSBarry Smith goto noinsert2; 377880c6e6aSBarry Smith } 378880c6e6aSBarry Smith } 379880c6e6aSBarry Smith if (nonew == 1) goto noinsert2; 3805f80ce2aSJacob Faibussowitsch PetscCheck(nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new global block indexed nonzero block (%" PetscInt_FMT ", %" PetscInt_FMT ") in the matrix", orow, ocol); 381880c6e6aSBarry Smith MatSeqXAIJReallocateAIJ(A, a->mbs, bs2, nrow, row, col, rmax, aa, ai, aj, rp, ap, imax, nonew, MatScalar); 3829371c9d4SSatish Balay N = nrow++ - 1; 3839371c9d4SSatish Balay high++; 384880c6e6aSBarry Smith /* shift up all the later entries in this row */ 3859566063dSJacob Faibussowitsch PetscCall(PetscArraymove(rp + i + 1, rp + i, N - i + 1)); 3869566063dSJacob Faibussowitsch PetscCall(PetscArraymove(ap + bs2 * (i + 1), ap + bs2 * i, bs2 * (N - i + 1))); 387880c6e6aSBarry Smith rp[i] = col; 388880c6e6aSBarry Smith bap = ap + bs2 * i; 389880c6e6aSBarry Smith if (roworiented) { 3908ab52850SBarry Smith for (ii = 0; ii < bs; ii++) { 391ad540459SPierre Jolivet for (jj = ii; jj < bs2; jj += bs) bap[jj] = *value++; 392880c6e6aSBarry Smith } 393880c6e6aSBarry Smith } else { 3948ab52850SBarry Smith for (ii = 0; ii < bs; ii++) { 395ad540459SPierre Jolivet for (jj = 0; jj < bs; jj++) *bap++ = *value++; 396880c6e6aSBarry Smith } 397880c6e6aSBarry Smith } 398880c6e6aSBarry Smith noinsert2:; 399880c6e6aSBarry Smith ailen[row] = nrow; 4003ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 401880c6e6aSBarry Smith } 402880c6e6aSBarry Smith 4038ab52850SBarry Smith /* 4048ab52850SBarry Smith This routine should be optimized so that the block copy at ** Here a copy is required ** below is not needed 4058ab52850SBarry Smith by passing additional stride information into the MatSetValuesBlocked_SeqBAIJ_Inlined() routine 4068ab52850SBarry Smith */ 40766976f2fSJacob Faibussowitsch static PetscErrorCode MatSetValuesBlocked_MPIBAIJ(Mat mat, PetscInt m, const PetscInt im[], PetscInt n, const PetscInt in[], const PetscScalar v[], InsertMode addv) 408d71ae5a4SJacob Faibussowitsch { 409ab26458aSBarry Smith Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 410dd6ea824SBarry Smith const PetscScalar *value; 411f15d580aSBarry Smith MatScalar *barray = baij->barray; 412ace3abfcSBarry Smith PetscBool roworiented = baij->roworiented; 413899cda47SBarry Smith PetscInt i, j, ii, jj, row, col, rstart = baij->rstartbs; 414899cda47SBarry Smith PetscInt rend = baij->rendbs, cstart = baij->cstartbs, stepval; 415d0f46423SBarry Smith PetscInt cend = baij->cendbs, bs = mat->rmap->bs, bs2 = baij->bs2; 416ab26458aSBarry Smith 417b16ae2b1SBarry Smith PetscFunctionBegin; 41830793edcSSatish Balay if (!barray) { 4199566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(bs2, &barray)); 42082502324SSatish Balay baij->barray = barray; 42130793edcSSatish Balay } 42230793edcSSatish Balay 42326fbe8dcSKarl Rupp if (roworiented) stepval = (n - 1) * bs; 42426fbe8dcSKarl Rupp else stepval = (m - 1) * bs; 42526fbe8dcSKarl Rupp 426ab26458aSBarry Smith for (i = 0; i < m; i++) { 4275ef9f2a5SBarry Smith if (im[i] < 0) continue; 4286bdcaf15SBarry Smith PetscCheck(im[i] < baij->Mbs, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Block indexed row too large %" PetscInt_FMT " max %" PetscInt_FMT, im[i], baij->Mbs - 1); 429ab26458aSBarry Smith if (im[i] >= rstart && im[i] < rend) { 430ab26458aSBarry Smith row = im[i] - rstart; 431ab26458aSBarry Smith for (j = 0; j < n; j++) { 43215b57d14SSatish Balay /* If NumCol = 1 then a copy is not required */ 43315b57d14SSatish Balay if ((roworiented) && (n == 1)) { 434f15d580aSBarry Smith barray = (MatScalar *)v + i * bs2; 43515b57d14SSatish Balay } else if ((!roworiented) && (m == 1)) { 436f15d580aSBarry Smith barray = (MatScalar *)v + j * bs2; 43715b57d14SSatish Balay } else { /* Here a copy is required */ 438ab26458aSBarry Smith if (roworiented) { 43953ef36baSBarry Smith value = v + (i * (stepval + bs) + j) * bs; 440ab26458aSBarry Smith } else { 44153ef36baSBarry Smith value = v + (j * (stepval + bs) + i) * bs; 442abef11f7SSatish Balay } 44353ef36baSBarry Smith for (ii = 0; ii < bs; ii++, value += bs + stepval) { 44426fbe8dcSKarl Rupp for (jj = 0; jj < bs; jj++) barray[jj] = value[jj]; 44553ef36baSBarry Smith barray += bs; 44647513183SBarry Smith } 44730793edcSSatish Balay barray -= bs2; 44815b57d14SSatish Balay } 449abef11f7SSatish Balay 450abef11f7SSatish Balay if (in[j] >= cstart && in[j] < cend) { 451abef11f7SSatish Balay col = in[j] - cstart; 4529566063dSJacob Faibussowitsch PetscCall(MatSetValuesBlocked_SeqBAIJ_Inlined(baij->A, row, col, barray, addv, im[i], in[j])); 453f7d195e4SLawrence Mitchell } else if (in[j] < 0) { 454f7d195e4SLawrence Mitchell continue; 455f7d195e4SLawrence Mitchell } else { 456f7d195e4SLawrence Mitchell PetscCheck(in[j] < baij->Nbs, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Block indexed column too large %" PetscInt_FMT " max %" PetscInt_FMT, in[j], baij->Nbs - 1); 457ab26458aSBarry Smith if (mat->was_assembled) { 45848a46eb9SPierre Jolivet if (!baij->colmap) PetscCall(MatCreateColmap_MPIBAIJ_Private(mat)); 459a5eb4965SSatish Balay 460aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 461eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIGetWithDefault(baij->colmap, in[j] + 1, 0, &col)); 462b758ae8cSBarry Smith col = col < 1 ? -1 : (col - 1) / bs; 46348e59246SSatish Balay #else 464b758ae8cSBarry Smith col = baij->colmap[in[j]] < 1 ? -1 : (baij->colmap[in[j]] - 1) / bs; 46548e59246SSatish Balay #endif 466f4f49eeaSPierre Jolivet if (col < 0 && !((Mat_SeqBAIJ *)baij->B->data)->nonew) { 4679566063dSJacob Faibussowitsch PetscCall(MatDisAssemble_MPIBAIJ(mat)); 468ab26458aSBarry Smith col = in[j]; 4695f80ce2aSJacob Faibussowitsch } else PetscCheck(col >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new blocked indexed nonzero block (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", im[i], in[j]); 470db4deed7SKarl Rupp } else col = in[j]; 4719566063dSJacob Faibussowitsch PetscCall(MatSetValuesBlocked_SeqBAIJ_Inlined(baij->B, row, col, barray, addv, im[i], in[j])); 472ab26458aSBarry Smith } 473ab26458aSBarry Smith } 474d64ed03dSBarry Smith } else { 4755f80ce2aSJacob Faibussowitsch PetscCheck(!mat->nooffprocentries, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Setting off process block indexed row %" PetscInt_FMT " even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set", im[i]); 476ab26458aSBarry Smith if (!baij->donotstash) { 477ff2fd236SBarry Smith if (roworiented) { 4789566063dSJacob Faibussowitsch PetscCall(MatStashValuesRowBlocked_Private(&mat->bstash, im[i], n, in, v, m, n, i)); 479ff2fd236SBarry Smith } else { 4809566063dSJacob Faibussowitsch PetscCall(MatStashValuesColBlocked_Private(&mat->bstash, im[i], n, in, v, m, n, i)); 481ff2fd236SBarry Smith } 482abef11f7SSatish Balay } 483ab26458aSBarry Smith } 484ab26458aSBarry Smith } 4853ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 486ab26458aSBarry Smith } 4876fa18ffdSBarry Smith 4880bdbc534SSatish Balay #define HASH_KEY 0.6180339887 489b24ad042SBarry Smith #define HASH(size, key, tmp) (tmp = (key) * HASH_KEY, (PetscInt)((size) * (tmp - (PetscInt)tmp))) 490b24ad042SBarry Smith /* #define HASH(size,key) ((PetscInt)((size)*fmod(((key)*HASH_KEY),1))) */ 491b24ad042SBarry Smith /* #define HASH(size,key,tmp) ((PetscInt)((size)*fmod(((key)*HASH_KEY),1))) */ 49266976f2fSJacob Faibussowitsch static PetscErrorCode MatSetValues_MPIBAIJ_HT(Mat mat, PetscInt m, const PetscInt im[], PetscInt n, const PetscInt in[], const PetscScalar v[], InsertMode addv) 493d71ae5a4SJacob Faibussowitsch { 4940bdbc534SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 495ace3abfcSBarry Smith PetscBool roworiented = baij->roworiented; 496b24ad042SBarry Smith PetscInt i, j, row, col; 497d0f46423SBarry Smith PetscInt rstart_orig = mat->rmap->rstart; 498d0f46423SBarry Smith PetscInt rend_orig = mat->rmap->rend, Nbs = baij->Nbs; 499d0f46423SBarry Smith PetscInt h1, key, size = baij->ht_size, bs = mat->rmap->bs, *HT = baij->ht, idx; 500329f5518SBarry Smith PetscReal tmp; 5013eda8832SBarry Smith MatScalar **HD = baij->hd, value; 502b24ad042SBarry Smith PetscInt total_ct = baij->ht_total_ct, insert_ct = baij->ht_insert_ct; 5030bdbc534SSatish Balay 5040bdbc534SSatish Balay PetscFunctionBegin; 5050bdbc534SSatish Balay for (i = 0; i < m; i++) { 50676bd3646SJed Brown if (PetscDefined(USE_DEBUG)) { 5075f80ce2aSJacob Faibussowitsch PetscCheck(im[i] >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Negative row"); 5085f80ce2aSJacob Faibussowitsch PetscCheck(im[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, im[i], mat->rmap->N - 1); 50976bd3646SJed Brown } 5100bdbc534SSatish Balay row = im[i]; 511c2760754SSatish Balay if (row >= rstart_orig && row < rend_orig) { 5120bdbc534SSatish Balay for (j = 0; j < n; j++) { 5130bdbc534SSatish Balay col = in[j]; 514db4deed7SKarl Rupp if (roworiented) value = v[i * n + j]; 515db4deed7SKarl Rupp else value = v[i + j * m]; 516b24ad042SBarry Smith /* Look up PetscInto the Hash Table */ 517c2760754SSatish Balay key = (row / bs) * Nbs + (col / bs) + 1; 518c2760754SSatish Balay h1 = HASH(size, key, tmp); 5190bdbc534SSatish Balay 520c2760754SSatish Balay idx = h1; 52176bd3646SJed Brown if (PetscDefined(USE_DEBUG)) { 522187ce0cbSSatish Balay insert_ct++; 523187ce0cbSSatish Balay total_ct++; 524187ce0cbSSatish Balay if (HT[idx] != key) { 525fbccb6d4SPierre Jolivet for (idx = h1; (idx < size) && (HT[idx] != key); idx++, total_ct++); 526187ce0cbSSatish Balay if (idx == size) { 527fbccb6d4SPierre Jolivet for (idx = 0; (idx < h1) && (HT[idx] != key); idx++, total_ct++); 5285f80ce2aSJacob Faibussowitsch PetscCheck(idx != h1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "(%" PetscInt_FMT ",%" PetscInt_FMT ") has no entry in the hash table", row, col); 529187ce0cbSSatish Balay } 530187ce0cbSSatish Balay } 53176bd3646SJed Brown } else if (HT[idx] != key) { 532fbccb6d4SPierre Jolivet for (idx = h1; (idx < size) && (HT[idx] != key); idx++); 533c2760754SSatish Balay if (idx == size) { 534fbccb6d4SPierre Jolivet for (idx = 0; (idx < h1) && (HT[idx] != key); idx++); 5355f80ce2aSJacob Faibussowitsch PetscCheck(idx != h1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "(%" PetscInt_FMT ",%" PetscInt_FMT ") has no entry in the hash table", row, col); 536c2760754SSatish Balay } 537c2760754SSatish Balay } 538c2760754SSatish Balay /* A HASH table entry is found, so insert the values at the correct address */ 539c2760754SSatish Balay if (addv == ADD_VALUES) *(HD[idx] + (col % bs) * bs + (row % bs)) += value; 540c2760754SSatish Balay else *(HD[idx] + (col % bs) * bs + (row % bs)) = value; 5410bdbc534SSatish Balay } 54226fbe8dcSKarl Rupp } else if (!baij->donotstash) { 543ff2fd236SBarry Smith if (roworiented) { 5449566063dSJacob Faibussowitsch PetscCall(MatStashValuesRow_Private(&mat->stash, im[i], n, in, v + i * n, PETSC_FALSE)); 545ff2fd236SBarry Smith } else { 5469566063dSJacob Faibussowitsch PetscCall(MatStashValuesCol_Private(&mat->stash, im[i], n, in, v + i, m, PETSC_FALSE)); 5470bdbc534SSatish Balay } 5480bdbc534SSatish Balay } 5490bdbc534SSatish Balay } 55076bd3646SJed Brown if (PetscDefined(USE_DEBUG)) { 551abf3b562SBarry Smith baij->ht_total_ct += total_ct; 552abf3b562SBarry Smith baij->ht_insert_ct += insert_ct; 55376bd3646SJed Brown } 5543ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5550bdbc534SSatish Balay } 5560bdbc534SSatish Balay 55766976f2fSJacob Faibussowitsch static PetscErrorCode MatSetValuesBlocked_MPIBAIJ_HT(Mat mat, PetscInt m, const PetscInt im[], PetscInt n, const PetscInt in[], const PetscScalar v[], InsertMode addv) 558d71ae5a4SJacob Faibussowitsch { 5590bdbc534SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 560ace3abfcSBarry Smith PetscBool roworiented = baij->roworiented; 561b24ad042SBarry Smith PetscInt i, j, ii, jj, row, col; 562899cda47SBarry Smith PetscInt rstart = baij->rstartbs; 563d0f46423SBarry Smith PetscInt rend = mat->rmap->rend, stepval, bs = mat->rmap->bs, bs2 = baij->bs2, nbs2 = n * bs2; 564b24ad042SBarry Smith PetscInt h1, key, size = baij->ht_size, idx, *HT = baij->ht, Nbs = baij->Nbs; 565329f5518SBarry Smith PetscReal tmp; 5663eda8832SBarry Smith MatScalar **HD = baij->hd, *baij_a; 567dd6ea824SBarry Smith const PetscScalar *v_t, *value; 568b24ad042SBarry Smith PetscInt total_ct = baij->ht_total_ct, insert_ct = baij->ht_insert_ct; 5690bdbc534SSatish Balay 570d0a41580SSatish Balay PetscFunctionBegin; 57126fbe8dcSKarl Rupp if (roworiented) stepval = (n - 1) * bs; 57226fbe8dcSKarl Rupp else stepval = (m - 1) * bs; 57326fbe8dcSKarl Rupp 5740bdbc534SSatish Balay for (i = 0; i < m; i++) { 57576bd3646SJed Brown if (PetscDefined(USE_DEBUG)) { 5765f80ce2aSJacob Faibussowitsch PetscCheck(im[i] >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Negative row: %" PetscInt_FMT, im[i]); 5775f80ce2aSJacob Faibussowitsch PetscCheck(im[i] < baij->Mbs, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, im[i], baij->Mbs - 1); 57876bd3646SJed Brown } 5790bdbc534SSatish Balay row = im[i]; 580ab715e2cSSatish Balay v_t = v + i * nbs2; 581c2760754SSatish Balay if (row >= rstart && row < rend) { 5820bdbc534SSatish Balay for (j = 0; j < n; j++) { 5830bdbc534SSatish Balay col = in[j]; 5840bdbc534SSatish Balay 5850bdbc534SSatish Balay /* Look up into the Hash Table */ 586c2760754SSatish Balay key = row * Nbs + col + 1; 587c2760754SSatish Balay h1 = HASH(size, key, tmp); 5880bdbc534SSatish Balay 589c2760754SSatish Balay idx = h1; 59076bd3646SJed Brown if (PetscDefined(USE_DEBUG)) { 591187ce0cbSSatish Balay total_ct++; 592187ce0cbSSatish Balay insert_ct++; 593187ce0cbSSatish Balay if (HT[idx] != key) { 594fbccb6d4SPierre Jolivet for (idx = h1; (idx < size) && (HT[idx] != key); idx++, total_ct++); 595187ce0cbSSatish Balay if (idx == size) { 596fbccb6d4SPierre Jolivet for (idx = 0; (idx < h1) && (HT[idx] != key); idx++, total_ct++); 5975f80ce2aSJacob Faibussowitsch PetscCheck(idx != h1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "(%" PetscInt_FMT ",%" PetscInt_FMT ") has no entry in the hash table", row, col); 598187ce0cbSSatish Balay } 599187ce0cbSSatish Balay } 60076bd3646SJed Brown } else if (HT[idx] != key) { 601fbccb6d4SPierre Jolivet for (idx = h1; (idx < size) && (HT[idx] != key); idx++); 602c2760754SSatish Balay if (idx == size) { 603fbccb6d4SPierre Jolivet for (idx = 0; (idx < h1) && (HT[idx] != key); idx++); 6045f80ce2aSJacob Faibussowitsch PetscCheck(idx != h1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "(%" PetscInt_FMT ",%" PetscInt_FMT ") has no entry in the hash table", row, col); 605c2760754SSatish Balay } 606c2760754SSatish Balay } 607c2760754SSatish Balay baij_a = HD[idx]; 6080bdbc534SSatish Balay if (roworiented) { 609c2760754SSatish Balay /*value = v + i*(stepval+bs)*bs + j*bs;*/ 610187ce0cbSSatish Balay /* value = v + (i*(stepval+bs)+j)*bs; */ 611187ce0cbSSatish Balay value = v_t; 612187ce0cbSSatish Balay v_t += bs; 613fef45726SSatish Balay if (addv == ADD_VALUES) { 614c2760754SSatish Balay for (ii = 0; ii < bs; ii++, value += stepval) { 615ad540459SPierre Jolivet for (jj = ii; jj < bs2; jj += bs) baij_a[jj] += *value++; 616b4cc0f5aSSatish Balay } 617fef45726SSatish Balay } else { 618c2760754SSatish Balay for (ii = 0; ii < bs; ii++, value += stepval) { 619ad540459SPierre Jolivet for (jj = ii; jj < bs2; jj += bs) baij_a[jj] = *value++; 620fef45726SSatish Balay } 621fef45726SSatish Balay } 6220bdbc534SSatish Balay } else { 6230bdbc534SSatish Balay value = v + j * (stepval + bs) * bs + i * bs; 624fef45726SSatish Balay if (addv == ADD_VALUES) { 625b4cc0f5aSSatish Balay for (ii = 0; ii < bs; ii++, value += stepval, baij_a += bs) { 626ad540459SPierre Jolivet for (jj = 0; jj < bs; jj++) baij_a[jj] += *value++; 627fef45726SSatish Balay } 628fef45726SSatish Balay } else { 629fef45726SSatish Balay for (ii = 0; ii < bs; ii++, value += stepval, baij_a += bs) { 630ad540459SPierre Jolivet for (jj = 0; jj < bs; jj++) baij_a[jj] = *value++; 631b4cc0f5aSSatish Balay } 6320bdbc534SSatish Balay } 6330bdbc534SSatish Balay } 6340bdbc534SSatish Balay } 6350bdbc534SSatish Balay } else { 6360bdbc534SSatish Balay if (!baij->donotstash) { 6370bdbc534SSatish Balay if (roworiented) { 6389566063dSJacob Faibussowitsch PetscCall(MatStashValuesRowBlocked_Private(&mat->bstash, im[i], n, in, v, m, n, i)); 6390bdbc534SSatish Balay } else { 6409566063dSJacob Faibussowitsch PetscCall(MatStashValuesColBlocked_Private(&mat->bstash, im[i], n, in, v, m, n, i)); 6410bdbc534SSatish Balay } 6420bdbc534SSatish Balay } 6430bdbc534SSatish Balay } 6440bdbc534SSatish Balay } 64576bd3646SJed Brown if (PetscDefined(USE_DEBUG)) { 646abf3b562SBarry Smith baij->ht_total_ct += total_ct; 647abf3b562SBarry Smith baij->ht_insert_ct += insert_ct; 64876bd3646SJed Brown } 6493ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6500bdbc534SSatish Balay } 651133cdb44SSatish Balay 65266976f2fSJacob Faibussowitsch static PetscErrorCode MatGetValues_MPIBAIJ(Mat mat, PetscInt m, const PetscInt idxm[], PetscInt n, const PetscInt idxn[], PetscScalar v[]) 653d71ae5a4SJacob Faibussowitsch { 654d6de1c52SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 655d0f46423SBarry Smith PetscInt bs = mat->rmap->bs, i, j, bsrstart = mat->rmap->rstart, bsrend = mat->rmap->rend; 656d0f46423SBarry Smith PetscInt bscstart = mat->cmap->rstart, bscend = mat->cmap->rend, row, col, data; 657d6de1c52SSatish Balay 658133cdb44SSatish Balay PetscFunctionBegin; 659d6de1c52SSatish Balay for (i = 0; i < m; i++) { 66054c59aa7SJacob Faibussowitsch if (idxm[i] < 0) continue; /* negative row */ 66154c59aa7SJacob Faibussowitsch PetscCheck(idxm[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, idxm[i], mat->rmap->N - 1); 662966bd95aSPierre Jolivet PetscCheck(idxm[i] >= bsrstart && idxm[i] < bsrend, PETSC_COMM_SELF, PETSC_ERR_SUP, "Only local values currently supported"); 663d6de1c52SSatish Balay row = idxm[i] - bsrstart; 664d6de1c52SSatish Balay for (j = 0; j < n; j++) { 66554c59aa7SJacob Faibussowitsch if (idxn[j] < 0) continue; /* negative column */ 66654c59aa7SJacob Faibussowitsch PetscCheck(idxn[j] < mat->cmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, idxn[j], mat->cmap->N - 1); 667d6de1c52SSatish Balay if (idxn[j] >= bscstart && idxn[j] < bscend) { 668d6de1c52SSatish Balay col = idxn[j] - bscstart; 6699566063dSJacob Faibussowitsch PetscCall(MatGetValues_SeqBAIJ(baij->A, 1, &row, 1, &col, v + i * n + j)); 670d64ed03dSBarry Smith } else { 67148a46eb9SPierre Jolivet if (!baij->colmap) PetscCall(MatCreateColmap_MPIBAIJ_Private(mat)); 672aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 673eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIGetWithDefault(baij->colmap, idxn[j] / bs + 1, 0, &data)); 674fa46199cSSatish Balay data--; 67548e59246SSatish Balay #else 67648e59246SSatish Balay data = baij->colmap[idxn[j] / bs] - 1; 67748e59246SSatish Balay #endif 678966bd95aSPierre Jolivet if (data < 0 || baij->garray[data / bs] != idxn[j] / bs) *(v + i * n + j) = 0.0; 679d9d09a02SSatish Balay else { 68048e59246SSatish Balay col = data + idxn[j] % bs; 6819566063dSJacob Faibussowitsch PetscCall(MatGetValues_SeqBAIJ(baij->B, 1, &row, 1, &col, v + i * n + j)); 682d6de1c52SSatish Balay } 683d6de1c52SSatish Balay } 684d6de1c52SSatish Balay } 685d6de1c52SSatish Balay } 6863ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 687d6de1c52SSatish Balay } 688d6de1c52SSatish Balay 68966976f2fSJacob Faibussowitsch static PetscErrorCode MatNorm_MPIBAIJ(Mat mat, NormType type, PetscReal *nrm) 690d71ae5a4SJacob Faibussowitsch { 691d6de1c52SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 692d6de1c52SSatish Balay Mat_SeqBAIJ *amat = (Mat_SeqBAIJ *)baij->A->data, *bmat = (Mat_SeqBAIJ *)baij->B->data; 693d0f46423SBarry Smith PetscInt i, j, bs2 = baij->bs2, bs = baij->A->rmap->bs, nz, row, col; 694329f5518SBarry Smith PetscReal sum = 0.0; 6953eda8832SBarry Smith MatScalar *v; 696d6de1c52SSatish Balay 697d64ed03dSBarry Smith PetscFunctionBegin; 698d6de1c52SSatish Balay if (baij->size == 1) { 6999566063dSJacob Faibussowitsch PetscCall(MatNorm(baij->A, type, nrm)); 700d6de1c52SSatish Balay } else { 701d6de1c52SSatish Balay if (type == NORM_FROBENIUS) { 702d6de1c52SSatish Balay v = amat->a; 7038a62d963SHong Zhang nz = amat->nz * bs2; 7048a62d963SHong Zhang for (i = 0; i < nz; i++) { 7059371c9d4SSatish Balay sum += PetscRealPart(PetscConj(*v) * (*v)); 7069371c9d4SSatish Balay v++; 707d6de1c52SSatish Balay } 708d6de1c52SSatish Balay v = bmat->a; 7098a62d963SHong Zhang nz = bmat->nz * bs2; 7108a62d963SHong Zhang for (i = 0; i < nz; i++) { 7119371c9d4SSatish Balay sum += PetscRealPart(PetscConj(*v) * (*v)); 7129371c9d4SSatish Balay v++; 713d6de1c52SSatish Balay } 714462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&sum, nrm, 1, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)mat))); 7158f1a2a5eSBarry Smith *nrm = PetscSqrtReal(*nrm); 7168a62d963SHong Zhang } else if (type == NORM_1) { /* max column sum */ 717e91c04dfSPierre Jolivet PetscReal *tmp; 718899cda47SBarry Smith PetscInt *jj, *garray = baij->garray, cstart = baij->rstartbs; 7196497c311SBarry Smith 7209566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(mat->cmap->N, &tmp)); 7219371c9d4SSatish Balay v = amat->a; 7229371c9d4SSatish Balay jj = amat->j; 7238a62d963SHong Zhang for (i = 0; i < amat->nz; i++) { 7248a62d963SHong Zhang for (j = 0; j < bs; j++) { 7258a62d963SHong Zhang col = bs * (cstart + *jj) + j; /* column index */ 7268a62d963SHong Zhang for (row = 0; row < bs; row++) { 7279371c9d4SSatish Balay tmp[col] += PetscAbsScalar(*v); 7289371c9d4SSatish Balay v++; 7298a62d963SHong Zhang } 7308a62d963SHong Zhang } 7318a62d963SHong Zhang jj++; 7328a62d963SHong Zhang } 7339371c9d4SSatish Balay v = bmat->a; 7349371c9d4SSatish Balay jj = bmat->j; 7358a62d963SHong Zhang for (i = 0; i < bmat->nz; i++) { 7368a62d963SHong Zhang for (j = 0; j < bs; j++) { 7378a62d963SHong Zhang col = bs * garray[*jj] + j; 7388a62d963SHong Zhang for (row = 0; row < bs; row++) { 7399371c9d4SSatish Balay tmp[col] += PetscAbsScalar(*v); 7409371c9d4SSatish Balay v++; 7418a62d963SHong Zhang } 7428a62d963SHong Zhang } 7438a62d963SHong Zhang jj++; 7448a62d963SHong Zhang } 745e91c04dfSPierre Jolivet PetscCallMPI(MPIU_Allreduce(MPI_IN_PLACE, tmp, mat->cmap->N, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)mat))); 7468a62d963SHong Zhang *nrm = 0.0; 747d0f46423SBarry Smith for (j = 0; j < mat->cmap->N; j++) { 748e91c04dfSPierre Jolivet if (tmp[j] > *nrm) *nrm = tmp[j]; 7498a62d963SHong Zhang } 7509566063dSJacob Faibussowitsch PetscCall(PetscFree(tmp)); 7518a62d963SHong Zhang } else if (type == NORM_INFINITY) { /* max row sum */ 752577dd1f9SKris Buschelman PetscReal *sums; 7539566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(bs, &sums)); 7548a62d963SHong Zhang sum = 0.0; 7558a62d963SHong Zhang for (j = 0; j < amat->mbs; j++) { 7568a62d963SHong Zhang for (row = 0; row < bs; row++) sums[row] = 0.0; 7578a62d963SHong Zhang v = amat->a + bs2 * amat->i[j]; 7588a62d963SHong Zhang nz = amat->i[j + 1] - amat->i[j]; 7598a62d963SHong Zhang for (i = 0; i < nz; i++) { 7608a62d963SHong Zhang for (col = 0; col < bs; col++) { 7618a62d963SHong Zhang for (row = 0; row < bs; row++) { 7629371c9d4SSatish Balay sums[row] += PetscAbsScalar(*v); 7639371c9d4SSatish Balay v++; 7648a62d963SHong Zhang } 7658a62d963SHong Zhang } 7668a62d963SHong Zhang } 7678a62d963SHong Zhang v = bmat->a + bs2 * bmat->i[j]; 7688a62d963SHong Zhang nz = bmat->i[j + 1] - bmat->i[j]; 7698a62d963SHong Zhang for (i = 0; i < nz; i++) { 7708a62d963SHong Zhang for (col = 0; col < bs; col++) { 7718a62d963SHong Zhang for (row = 0; row < bs; row++) { 7729371c9d4SSatish Balay sums[row] += PetscAbsScalar(*v); 7739371c9d4SSatish Balay v++; 7748a62d963SHong Zhang } 7758a62d963SHong Zhang } 7768a62d963SHong Zhang } 7778a62d963SHong Zhang for (row = 0; row < bs; row++) { 7788a62d963SHong Zhang if (sums[row] > sum) sum = sums[row]; 7798a62d963SHong Zhang } 7808a62d963SHong Zhang } 781462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&sum, nrm, 1, MPIU_REAL, MPIU_MAX, PetscObjectComm((PetscObject)mat))); 7829566063dSJacob Faibussowitsch PetscCall(PetscFree(sums)); 783ce94432eSBarry Smith } else SETERRQ(PetscObjectComm((PetscObject)mat), PETSC_ERR_SUP, "No support for this norm yet"); 784d64ed03dSBarry Smith } 7853ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 786d6de1c52SSatish Balay } 78757b952d6SSatish Balay 788fef45726SSatish Balay /* 789fef45726SSatish Balay Creates the hash table, and sets the table 790fef45726SSatish Balay This table is created only once. 79146091a0eSPierre Jolivet If new entries need to be added to the matrix 792fef45726SSatish Balay then the hash table has to be destroyed and 793fef45726SSatish Balay recreated. 794fef45726SSatish Balay */ 79566976f2fSJacob Faibussowitsch static PetscErrorCode MatCreateHashTable_MPIBAIJ_Private(Mat mat, PetscReal factor) 796d71ae5a4SJacob Faibussowitsch { 797596b8d2eSBarry Smith Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 798596b8d2eSBarry Smith Mat A = baij->A, B = baij->B; 799596b8d2eSBarry Smith Mat_SeqBAIJ *a = (Mat_SeqBAIJ *)A->data, *b = (Mat_SeqBAIJ *)B->data; 800b24ad042SBarry Smith PetscInt i, j, k, nz = a->nz + b->nz, h1, *ai = a->i, *aj = a->j, *bi = b->i, *bj = b->j; 801fca92195SBarry Smith PetscInt ht_size, bs2 = baij->bs2, rstart = baij->rstartbs; 802899cda47SBarry Smith PetscInt cstart = baij->cstartbs, *garray = baij->garray, row, col, Nbs = baij->Nbs; 803b24ad042SBarry Smith PetscInt *HT, key; 8043eda8832SBarry Smith MatScalar **HD; 805329f5518SBarry Smith PetscReal tmp; 8066cf91177SBarry Smith #if defined(PETSC_USE_INFO) 807b24ad042SBarry Smith PetscInt ct = 0, max = 0; 8084a15367fSSatish Balay #endif 809fef45726SSatish Balay 810d64ed03dSBarry Smith PetscFunctionBegin; 8113ba16761SJacob Faibussowitsch if (baij->ht) PetscFunctionReturn(PETSC_SUCCESS); 812fef45726SSatish Balay 813fca92195SBarry Smith baij->ht_size = (PetscInt)(factor * nz); 814fca92195SBarry Smith ht_size = baij->ht_size; 8150bdbc534SSatish Balay 816fef45726SSatish Balay /* Allocate Memory for Hash Table */ 8179566063dSJacob Faibussowitsch PetscCall(PetscCalloc2(ht_size, &baij->hd, ht_size, &baij->ht)); 818b9e4cc15SSatish Balay HD = baij->hd; 819a07cd24cSSatish Balay HT = baij->ht; 820b9e4cc15SSatish Balay 821596b8d2eSBarry Smith /* Loop Over A */ 8220bdbc534SSatish Balay for (i = 0; i < a->mbs; i++) { 823596b8d2eSBarry Smith for (j = ai[i]; j < ai[i + 1]; j++) { 8240bdbc534SSatish Balay row = i + rstart; 8250bdbc534SSatish Balay col = aj[j] + cstart; 826596b8d2eSBarry Smith 827187ce0cbSSatish Balay key = row * Nbs + col + 1; 828fca92195SBarry Smith h1 = HASH(ht_size, key, tmp); 829fca92195SBarry Smith for (k = 0; k < ht_size; k++) { 830fca92195SBarry Smith if (!HT[(h1 + k) % ht_size]) { 831fca92195SBarry Smith HT[(h1 + k) % ht_size] = key; 832fca92195SBarry Smith HD[(h1 + k) % ht_size] = a->a + j * bs2; 833596b8d2eSBarry Smith break; 8346cf91177SBarry Smith #if defined(PETSC_USE_INFO) 835187ce0cbSSatish Balay } else { 836187ce0cbSSatish Balay ct++; 837187ce0cbSSatish Balay #endif 838596b8d2eSBarry Smith } 839187ce0cbSSatish Balay } 8406cf91177SBarry Smith #if defined(PETSC_USE_INFO) 841187ce0cbSSatish Balay if (k > max) max = k; 842187ce0cbSSatish Balay #endif 843596b8d2eSBarry Smith } 844596b8d2eSBarry Smith } 845596b8d2eSBarry Smith /* Loop Over B */ 8460bdbc534SSatish Balay for (i = 0; i < b->mbs; i++) { 847596b8d2eSBarry Smith for (j = bi[i]; j < bi[i + 1]; j++) { 8480bdbc534SSatish Balay row = i + rstart; 8490bdbc534SSatish Balay col = garray[bj[j]]; 850187ce0cbSSatish Balay key = row * Nbs + col + 1; 851fca92195SBarry Smith h1 = HASH(ht_size, key, tmp); 852fca92195SBarry Smith for (k = 0; k < ht_size; k++) { 853fca92195SBarry Smith if (!HT[(h1 + k) % ht_size]) { 854fca92195SBarry Smith HT[(h1 + k) % ht_size] = key; 855fca92195SBarry Smith HD[(h1 + k) % ht_size] = b->a + j * bs2; 856596b8d2eSBarry Smith break; 8576cf91177SBarry Smith #if defined(PETSC_USE_INFO) 858187ce0cbSSatish Balay } else { 859187ce0cbSSatish Balay ct++; 860187ce0cbSSatish Balay #endif 861596b8d2eSBarry Smith } 862187ce0cbSSatish Balay } 8636cf91177SBarry Smith #if defined(PETSC_USE_INFO) 864187ce0cbSSatish Balay if (k > max) max = k; 865187ce0cbSSatish Balay #endif 866596b8d2eSBarry Smith } 867596b8d2eSBarry Smith } 868596b8d2eSBarry Smith 869596b8d2eSBarry Smith /* Print Summary */ 8706cf91177SBarry Smith #if defined(PETSC_USE_INFO) 871fca92195SBarry Smith for (i = 0, j = 0; i < ht_size; i++) { 87226fbe8dcSKarl Rupp if (HT[i]) j++; 873c38d4ed2SBarry Smith } 874835f2295SStefano Zampini PetscCall(PetscInfo(mat, "Average Search = %5.2g,max search = %" PetscInt_FMT "\n", (!j) ? 0.0 : (double)(((PetscReal)(ct + j)) / j), max)); 875187ce0cbSSatish Balay #endif 8763ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 877596b8d2eSBarry Smith } 87857b952d6SSatish Balay 87966976f2fSJacob Faibussowitsch static PetscErrorCode MatAssemblyBegin_MPIBAIJ(Mat mat, MatAssemblyType mode) 880d71ae5a4SJacob Faibussowitsch { 881bbb85fb3SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 882b24ad042SBarry Smith PetscInt nstash, reallocs; 883bbb85fb3SSatish Balay 884bbb85fb3SSatish Balay PetscFunctionBegin; 8853ba16761SJacob Faibussowitsch if (baij->donotstash || mat->nooffprocentries) PetscFunctionReturn(PETSC_SUCCESS); 886bbb85fb3SSatish Balay 8879566063dSJacob Faibussowitsch PetscCall(MatStashScatterBegin_Private(mat, &mat->stash, mat->rmap->range)); 8889566063dSJacob Faibussowitsch PetscCall(MatStashScatterBegin_Private(mat, &mat->bstash, baij->rangebs)); 8899566063dSJacob Faibussowitsch PetscCall(MatStashGetInfo_Private(&mat->stash, &nstash, &reallocs)); 8909566063dSJacob Faibussowitsch PetscCall(PetscInfo(mat, "Stash has %" PetscInt_FMT " entries,uses %" PetscInt_FMT " mallocs.\n", nstash, reallocs)); 8919566063dSJacob Faibussowitsch PetscCall(MatStashGetInfo_Private(&mat->bstash, &nstash, &reallocs)); 8929566063dSJacob Faibussowitsch PetscCall(PetscInfo(mat, "Block-Stash has %" PetscInt_FMT " entries, uses %" PetscInt_FMT " mallocs.\n", nstash, reallocs)); 8933ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 894bbb85fb3SSatish Balay } 895bbb85fb3SSatish Balay 89666976f2fSJacob Faibussowitsch static PetscErrorCode MatAssemblyEnd_MPIBAIJ(Mat mat, MatAssemblyType mode) 897d71ae5a4SJacob Faibussowitsch { 898bbb85fb3SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 89991c97fd4SSatish Balay Mat_SeqBAIJ *a = (Mat_SeqBAIJ *)baij->A->data; 900b24ad042SBarry Smith PetscInt i, j, rstart, ncols, flg, bs2 = baij->bs2; 901e44c0bd4SBarry Smith PetscInt *row, *col; 902c0edf612SJunchao Zhang PetscBool r1, r2, r3, all_assembled; 9033eda8832SBarry Smith MatScalar *val; 904b24ad042SBarry Smith PetscMPIInt n; 905bbb85fb3SSatish Balay 906bbb85fb3SSatish Balay PetscFunctionBegin; 9075fd66863SKarl Rupp /* do not use 'b=(Mat_SeqBAIJ*)baij->B->data' as B can be reset in disassembly */ 9084cb17eb5SBarry Smith if (!baij->donotstash && !mat->nooffprocentries) { 909a2d1c673SSatish Balay while (1) { 9109566063dSJacob Faibussowitsch PetscCall(MatStashScatterGetMesg_Private(&mat->stash, &n, &row, &col, &val, &flg)); 911a2d1c673SSatish Balay if (!flg) break; 912a2d1c673SSatish Balay 913bbb85fb3SSatish Balay for (i = 0; i < n;) { 914bbb85fb3SSatish Balay /* Now identify the consecutive vals belonging to the same row */ 91526fbe8dcSKarl Rupp for (j = i, rstart = row[j]; j < n; j++) { 91626fbe8dcSKarl Rupp if (row[j] != rstart) break; 91726fbe8dcSKarl Rupp } 918bbb85fb3SSatish Balay if (j < n) ncols = j - i; 919bbb85fb3SSatish Balay else ncols = n - i; 920bbb85fb3SSatish Balay /* Now assemble all these values with a single function call */ 9219566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPIBAIJ(mat, 1, row + i, ncols, col + i, val + i, mat->insertmode)); 922bbb85fb3SSatish Balay i = j; 923bbb85fb3SSatish Balay } 924bbb85fb3SSatish Balay } 9259566063dSJacob Faibussowitsch PetscCall(MatStashScatterEnd_Private(&mat->stash)); 926a2d1c673SSatish Balay /* Now process the block-stash. Since the values are stashed column-oriented, 9275e116b59SBarry Smith set the row-oriented flag to column-oriented, and after MatSetValues() 928a2d1c673SSatish Balay restore the original flags */ 929a2d1c673SSatish Balay r1 = baij->roworiented; 930a2d1c673SSatish Balay r2 = a->roworiented; 93191c97fd4SSatish Balay r3 = ((Mat_SeqBAIJ *)baij->B->data)->roworiented; 93226fbe8dcSKarl Rupp 9337c922b88SBarry Smith baij->roworiented = PETSC_FALSE; 9347c922b88SBarry Smith a->roworiented = PETSC_FALSE; 935f4f49eeaSPierre Jolivet ((Mat_SeqBAIJ *)baij->B->data)->roworiented = PETSC_FALSE; 936a2d1c673SSatish Balay while (1) { 9379566063dSJacob Faibussowitsch PetscCall(MatStashScatterGetMesg_Private(&mat->bstash, &n, &row, &col, &val, &flg)); 938a2d1c673SSatish Balay if (!flg) break; 939a2d1c673SSatish Balay 940a2d1c673SSatish Balay for (i = 0; i < n;) { 941a2d1c673SSatish Balay /* Now identify the consecutive vals belonging to the same row */ 94226fbe8dcSKarl Rupp for (j = i, rstart = row[j]; j < n; j++) { 94326fbe8dcSKarl Rupp if (row[j] != rstart) break; 94426fbe8dcSKarl Rupp } 945a2d1c673SSatish Balay if (j < n) ncols = j - i; 946a2d1c673SSatish Balay else ncols = n - i; 9479566063dSJacob Faibussowitsch PetscCall(MatSetValuesBlocked_MPIBAIJ(mat, 1, row + i, ncols, col + i, val + i * bs2, mat->insertmode)); 948a2d1c673SSatish Balay i = j; 949a2d1c673SSatish Balay } 950a2d1c673SSatish Balay } 9519566063dSJacob Faibussowitsch PetscCall(MatStashScatterEnd_Private(&mat->bstash)); 95226fbe8dcSKarl Rupp 953a2d1c673SSatish Balay baij->roworiented = r1; 954a2d1c673SSatish Balay a->roworiented = r2; 9555e116b59SBarry Smith ((Mat_SeqBAIJ *)baij->B->data)->roworiented = r3; 956bbb85fb3SSatish Balay } 957bbb85fb3SSatish Balay 9589566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(baij->A, mode)); 9599566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(baij->A, mode)); 960bbb85fb3SSatish Balay 961b638e6b4SJunchao Zhang /* determine if any process has disassembled, if so we must 9626aad120cSJose E. Roman also disassemble ourselves, in order that we may reassemble. */ 963bbb85fb3SSatish Balay /* 964bbb85fb3SSatish Balay if nonzero structure of submatrix B cannot change then we know that 965b638e6b4SJunchao Zhang no process disassembled thus we can skip this stuff 966bbb85fb3SSatish Balay */ 967bbb85fb3SSatish Balay if (!((Mat_SeqBAIJ *)baij->B->data)->nonew) { 9685440e5dcSBarry Smith PetscCallMPI(MPIU_Allreduce(&mat->was_assembled, &all_assembled, 1, MPI_C_BOOL, MPI_LAND, PetscObjectComm((PetscObject)mat))); 969c0edf612SJunchao Zhang if (mat->was_assembled && !all_assembled) PetscCall(MatDisAssemble_MPIBAIJ(mat)); 970bbb85fb3SSatish Balay } 971bbb85fb3SSatish Balay 97248a46eb9SPierre Jolivet if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) PetscCall(MatSetUpMultiply_MPIBAIJ(mat)); 9739566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(baij->B, mode)); 9749566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(baij->B, mode)); 975bbb85fb3SSatish Balay 9766cf91177SBarry Smith #if defined(PETSC_USE_INFO) 977bbb85fb3SSatish Balay if (baij->ht && mode == MAT_FINAL_ASSEMBLY) { 9789566063dSJacob Faibussowitsch PetscCall(PetscInfo(mat, "Average Hash Table Search in MatSetValues = %5.2f\n", (double)((PetscReal)baij->ht_total_ct) / baij->ht_insert_ct)); 97926fbe8dcSKarl Rupp 980bbb85fb3SSatish Balay baij->ht_total_ct = 0; 981bbb85fb3SSatish Balay baij->ht_insert_ct = 0; 982bbb85fb3SSatish Balay } 983bbb85fb3SSatish Balay #endif 984bbb85fb3SSatish Balay if (baij->ht_flag && !baij->ht && mode == MAT_FINAL_ASSEMBLY) { 9859566063dSJacob Faibussowitsch PetscCall(MatCreateHashTable_MPIBAIJ_Private(mat, baij->ht_fact)); 98626fbe8dcSKarl Rupp 987bbb85fb3SSatish Balay mat->ops->setvalues = MatSetValues_MPIBAIJ_HT; 988bbb85fb3SSatish Balay mat->ops->setvaluesblocked = MatSetValuesBlocked_MPIBAIJ_HT; 989bbb85fb3SSatish Balay } 990bbb85fb3SSatish Balay 9919566063dSJacob Faibussowitsch PetscCall(PetscFree2(baij->rowvalues, baij->rowindices)); 99226fbe8dcSKarl Rupp 993f4259b30SLisandro Dalcin baij->rowvalues = NULL; 9944f9cfa9eSBarry Smith 9954f9cfa9eSBarry Smith /* if no new nonzero locations are allowed in matrix then only set the matrix state the first time through */ 996f4f49eeaSPierre Jolivet if ((!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) || !((Mat_SeqBAIJ *)baij->A->data)->nonew) { 997e56f5c9eSBarry Smith PetscObjectState state = baij->A->nonzerostate + baij->B->nonzerostate; 998462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&state, &mat->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)mat))); 999e56f5c9eSBarry Smith } 10003ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1001bbb85fb3SSatish Balay } 100257b952d6SSatish Balay 10039804daf3SBarry Smith #include <petscdraw.h> 1004d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatView_MPIBAIJ_ASCIIorDraworSocket(Mat mat, PetscViewer viewer) 1005d71ae5a4SJacob Faibussowitsch { 100657b952d6SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 10077da1fb6eSBarry Smith PetscMPIInt rank = baij->rank; 1008d0f46423SBarry Smith PetscInt bs = mat->rmap->bs; 10099f196a02SMartin Diehl PetscBool isascii, isdraw; 1010b0a32e0cSBarry Smith PetscViewer sviewer; 1011f3ef73ceSBarry Smith PetscViewerFormat format; 101257b952d6SSatish Balay 1013d64ed03dSBarry Smith PetscFunctionBegin; 10149f196a02SMartin Diehl PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &isascii)); 10159566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERDRAW, &isdraw)); 10169f196a02SMartin Diehl if (isascii) { 10179566063dSJacob Faibussowitsch PetscCall(PetscViewerGetFormat(viewer, &format)); 1018456192e2SBarry Smith if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 10194e220ebcSLois Curfman McInnes MatInfo info; 10209566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)mat), &rank)); 10219566063dSJacob Faibussowitsch PetscCall(MatGetInfo(mat, MAT_LOCAL, &info)); 10229566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPushSynchronized(viewer)); 10239371c9d4SSatish Balay PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] Local rows %" PetscInt_FMT " nz %" PetscInt_FMT " nz alloced %" PetscInt_FMT " bs %" PetscInt_FMT " mem %g\n", rank, mat->rmap->n, (PetscInt)info.nz_used, (PetscInt)info.nz_allocated, 1024835f2295SStefano Zampini mat->rmap->bs, info.memory)); 10259566063dSJacob Faibussowitsch PetscCall(MatGetInfo(baij->A, MAT_LOCAL, &info)); 10269566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] on-diagonal part: nz %" PetscInt_FMT " \n", rank, (PetscInt)info.nz_used)); 10279566063dSJacob Faibussowitsch PetscCall(MatGetInfo(baij->B, MAT_LOCAL, &info)); 10289566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] off-diagonal part: nz %" PetscInt_FMT " \n", rank, (PetscInt)info.nz_used)); 10299566063dSJacob Faibussowitsch PetscCall(PetscViewerFlush(viewer)); 10309566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPopSynchronized(viewer)); 10319566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "Information on VecScatter used in matrix-vector product: \n")); 10329566063dSJacob Faibussowitsch PetscCall(VecScatterView(baij->Mvctx, viewer)); 10333ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1034fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_INFO) { 10359566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, " block size is %" PetscInt_FMT "\n", bs)); 10363ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 103704929863SHong Zhang } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) { 10383ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 103957b952d6SSatish Balay } 104057b952d6SSatish Balay } 104157b952d6SSatish Balay 10420f5bd95cSBarry Smith if (isdraw) { 1043b0a32e0cSBarry Smith PetscDraw draw; 1044ace3abfcSBarry Smith PetscBool isnull; 10459566063dSJacob Faibussowitsch PetscCall(PetscViewerDrawGetDraw(viewer, 0, &draw)); 10469566063dSJacob Faibussowitsch PetscCall(PetscDrawIsNull(draw, &isnull)); 10473ba16761SJacob Faibussowitsch if (isnull) PetscFunctionReturn(PETSC_SUCCESS); 104857b952d6SSatish Balay } 104957b952d6SSatish Balay 10507da1fb6eSBarry Smith { 105157b952d6SSatish Balay /* assemble the entire matrix onto first processor. */ 105257b952d6SSatish Balay Mat A; 105357b952d6SSatish Balay Mat_SeqBAIJ *Aloc; 1054d0f46423SBarry Smith PetscInt M = mat->rmap->N, N = mat->cmap->N, *ai, *aj, col, i, j, k, *rvals, mbs = baij->mbs; 10553eda8832SBarry Smith MatScalar *a; 10563e219373SBarry Smith const char *matname; 105757b952d6SSatish Balay 1058f204ca49SKris Buschelman /* Here we are creating a temporary matrix, so will assume MPIBAIJ is acceptable */ 1059f204ca49SKris Buschelman /* Perhaps this should be the type of mat? */ 10609566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)mat), &A)); 1061dd400576SPatrick Sanan if (rank == 0) { 10629566063dSJacob Faibussowitsch PetscCall(MatSetSizes(A, M, N, M, N)); 1063d64ed03dSBarry Smith } else { 10649566063dSJacob Faibussowitsch PetscCall(MatSetSizes(A, 0, 0, M, N)); 106557b952d6SSatish Balay } 10669566063dSJacob Faibussowitsch PetscCall(MatSetType(A, MATMPIBAIJ)); 10679566063dSJacob Faibussowitsch PetscCall(MatMPIBAIJSetPreallocation(A, mat->rmap->bs, 0, NULL, 0, NULL)); 10689566063dSJacob Faibussowitsch PetscCall(MatSetOption(A, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_FALSE)); 106957b952d6SSatish Balay 107057b952d6SSatish Balay /* copy over the A part */ 107157b952d6SSatish Balay Aloc = (Mat_SeqBAIJ *)baij->A->data; 10729371c9d4SSatish Balay ai = Aloc->i; 10739371c9d4SSatish Balay aj = Aloc->j; 10749371c9d4SSatish Balay a = Aloc->a; 10759566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(bs, &rvals)); 107657b952d6SSatish Balay 107757b952d6SSatish Balay for (i = 0; i < mbs; i++) { 1078899cda47SBarry Smith rvals[0] = bs * (baij->rstartbs + i); 107926fbe8dcSKarl Rupp for (j = 1; j < bs; j++) rvals[j] = rvals[j - 1] + 1; 108057b952d6SSatish Balay for (j = ai[i]; j < ai[i + 1]; j++) { 1081899cda47SBarry Smith col = (baij->cstartbs + aj[j]) * bs; 108257b952d6SSatish Balay for (k = 0; k < bs; k++) { 10839566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPIBAIJ(A, bs, rvals, 1, &col, a, INSERT_VALUES)); 10849371c9d4SSatish Balay col++; 10859371c9d4SSatish Balay a += bs; 108657b952d6SSatish Balay } 108757b952d6SSatish Balay } 108857b952d6SSatish Balay } 108957b952d6SSatish Balay /* copy over the B part */ 109057b952d6SSatish Balay Aloc = (Mat_SeqBAIJ *)baij->B->data; 10919371c9d4SSatish Balay ai = Aloc->i; 10929371c9d4SSatish Balay aj = Aloc->j; 10939371c9d4SSatish Balay a = Aloc->a; 109457b952d6SSatish Balay for (i = 0; i < mbs; i++) { 1095899cda47SBarry Smith rvals[0] = bs * (baij->rstartbs + i); 109626fbe8dcSKarl Rupp for (j = 1; j < bs; j++) rvals[j] = rvals[j - 1] + 1; 109757b952d6SSatish Balay for (j = ai[i]; j < ai[i + 1]; j++) { 109857b952d6SSatish Balay col = baij->garray[aj[j]] * bs; 109957b952d6SSatish Balay for (k = 0; k < bs; k++) { 11009566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPIBAIJ(A, bs, rvals, 1, &col, a, INSERT_VALUES)); 11019371c9d4SSatish Balay col++; 11029371c9d4SSatish Balay a += bs; 110357b952d6SSatish Balay } 110457b952d6SSatish Balay } 110557b952d6SSatish Balay } 11069566063dSJacob Faibussowitsch PetscCall(PetscFree(rvals)); 11079566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(A, MAT_FINAL_ASSEMBLY)); 11089566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(A, MAT_FINAL_ASSEMBLY)); 110955843e3eSBarry Smith /* 111055843e3eSBarry Smith Everyone has to call to draw the matrix since the graphics waits are 1111b0a32e0cSBarry Smith synchronized across all processors that share the PetscDraw object 111255843e3eSBarry Smith */ 11139566063dSJacob Faibussowitsch PetscCall(PetscViewerGetSubViewer(viewer, PETSC_COMM_SELF, &sviewer)); 111423a3927dSBarry Smith if (((PetscObject)mat)->name) PetscCall(PetscObjectGetName((PetscObject)mat, &matname)); 1115dd400576SPatrick Sanan if (rank == 0) { 1116f4f49eeaSPierre Jolivet if (((PetscObject)mat)->name) PetscCall(PetscObjectSetName((PetscObject)((Mat_MPIBAIJ *)A->data)->A, matname)); 1117f4f49eeaSPierre Jolivet PetscCall(MatView_SeqBAIJ(((Mat_MPIBAIJ *)A->data)->A, sviewer)); 111857b952d6SSatish Balay } 11199566063dSJacob Faibussowitsch PetscCall(PetscViewerRestoreSubViewer(viewer, PETSC_COMM_SELF, &sviewer)); 11209566063dSJacob Faibussowitsch PetscCall(MatDestroy(&A)); 112157b952d6SSatish Balay } 11223ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 112357b952d6SSatish Balay } 112457b952d6SSatish Balay 1125618cc2edSLisandro Dalcin /* Used for both MPIBAIJ and MPISBAIJ matrices */ 1126d71ae5a4SJacob Faibussowitsch PetscErrorCode MatView_MPIBAIJ_Binary(Mat mat, PetscViewer viewer) 1127d71ae5a4SJacob Faibussowitsch { 1128b51a4376SLisandro Dalcin Mat_MPIBAIJ *aij = (Mat_MPIBAIJ *)mat->data; 1129b51a4376SLisandro Dalcin Mat_SeqBAIJ *A = (Mat_SeqBAIJ *)aij->A->data; 1130b51a4376SLisandro Dalcin Mat_SeqBAIJ *B = (Mat_SeqBAIJ *)aij->B->data; 1131b51a4376SLisandro Dalcin const PetscInt *garray = aij->garray; 113217a3732bSBarry Smith PetscInt header[4], M, N, m, rs, cs, bs, cnt, i, j, ja, jb, k, l; 11336497c311SBarry Smith PetscCount nz, hnz; 1134b51a4376SLisandro Dalcin PetscInt *rowlens, *colidxs; 1135b51a4376SLisandro Dalcin PetscScalar *matvals; 113617a3732bSBarry Smith PetscMPIInt rank; 1137660746e0SBarry Smith 1138660746e0SBarry Smith PetscFunctionBegin; 11399566063dSJacob Faibussowitsch PetscCall(PetscViewerSetUp(viewer)); 1140b51a4376SLisandro Dalcin 1141b51a4376SLisandro Dalcin M = mat->rmap->N; 1142b51a4376SLisandro Dalcin N = mat->cmap->N; 1143b51a4376SLisandro Dalcin m = mat->rmap->n; 1144b51a4376SLisandro Dalcin rs = mat->rmap->rstart; 1145b51a4376SLisandro Dalcin cs = mat->cmap->rstart; 1146b51a4376SLisandro Dalcin bs = mat->rmap->bs; 1147b51a4376SLisandro Dalcin nz = bs * bs * (A->nz + B->nz); 1148b51a4376SLisandro Dalcin 1149b51a4376SLisandro Dalcin /* write matrix header */ 1150660746e0SBarry Smith header[0] = MAT_FILE_CLASSID; 11519371c9d4SSatish Balay header[1] = M; 11529371c9d4SSatish Balay header[2] = N; 11536497c311SBarry Smith PetscCallMPI(MPI_Reduce(&nz, &hnz, 1, MPIU_COUNT, MPI_SUM, 0, PetscObjectComm((PetscObject)mat))); 115417a3732bSBarry Smith PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)mat), &rank)); 115517a3732bSBarry Smith if (rank == 0) PetscCall(PetscIntCast(hnz, &header[3])); 11569566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryWrite(viewer, header, 4, PETSC_INT)); 1157660746e0SBarry Smith 1158b51a4376SLisandro Dalcin /* fill in and store row lengths */ 11599566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m, &rowlens)); 1160b51a4376SLisandro Dalcin for (cnt = 0, i = 0; i < A->mbs; i++) 11619371c9d4SSatish Balay for (j = 0; j < bs; j++) rowlens[cnt++] = bs * (A->i[i + 1] - A->i[i] + B->i[i + 1] - B->i[i]); 11629566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryWriteAll(viewer, rowlens, m, rs, M, PETSC_INT)); 11639566063dSJacob Faibussowitsch PetscCall(PetscFree(rowlens)); 1164660746e0SBarry Smith 1165b51a4376SLisandro Dalcin /* fill in and store column indices */ 11669566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nz, &colidxs)); 1167b51a4376SLisandro Dalcin for (cnt = 0, i = 0; i < A->mbs; i++) { 1168b51a4376SLisandro Dalcin for (k = 0; k < bs; k++) { 1169b51a4376SLisandro Dalcin for (jb = B->i[i]; jb < B->i[i + 1]; jb++) { 1170b51a4376SLisandro Dalcin if (garray[B->j[jb]] > cs / bs) break; 11719371c9d4SSatish Balay for (l = 0; l < bs; l++) colidxs[cnt++] = bs * garray[B->j[jb]] + l; 1172660746e0SBarry Smith } 1173b51a4376SLisandro Dalcin for (ja = A->i[i]; ja < A->i[i + 1]; ja++) 11749371c9d4SSatish Balay for (l = 0; l < bs; l++) colidxs[cnt++] = bs * A->j[ja] + l + cs; 1175b51a4376SLisandro Dalcin for (; jb < B->i[i + 1]; jb++) 11769371c9d4SSatish Balay for (l = 0; l < bs; l++) colidxs[cnt++] = bs * garray[B->j[jb]] + l; 1177660746e0SBarry Smith } 1178660746e0SBarry Smith } 11796497c311SBarry Smith PetscCheck(cnt == nz, PETSC_COMM_SELF, PETSC_ERR_LIB, "Internal PETSc error: cnt = %" PetscInt_FMT " nz = %" PetscCount_FMT, cnt, nz); 11809566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryWriteAll(viewer, colidxs, nz, PETSC_DECIDE, PETSC_DECIDE, PETSC_INT)); 11819566063dSJacob Faibussowitsch PetscCall(PetscFree(colidxs)); 1182660746e0SBarry Smith 1183b51a4376SLisandro Dalcin /* fill in and store nonzero values */ 11849566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nz, &matvals)); 1185b51a4376SLisandro Dalcin for (cnt = 0, i = 0; i < A->mbs; i++) { 1186b51a4376SLisandro Dalcin for (k = 0; k < bs; k++) { 1187b51a4376SLisandro Dalcin for (jb = B->i[i]; jb < B->i[i + 1]; jb++) { 1188b51a4376SLisandro Dalcin if (garray[B->j[jb]] > cs / bs) break; 11899371c9d4SSatish Balay for (l = 0; l < bs; l++) matvals[cnt++] = B->a[bs * (bs * jb + l) + k]; 1190660746e0SBarry Smith } 1191b51a4376SLisandro Dalcin for (ja = A->i[i]; ja < A->i[i + 1]; ja++) 11929371c9d4SSatish Balay for (l = 0; l < bs; l++) matvals[cnt++] = A->a[bs * (bs * ja + l) + k]; 1193b51a4376SLisandro Dalcin for (; jb < B->i[i + 1]; jb++) 11949371c9d4SSatish Balay for (l = 0; l < bs; l++) matvals[cnt++] = B->a[bs * (bs * jb + l) + k]; 1195660746e0SBarry Smith } 1196b51a4376SLisandro Dalcin } 11979566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryWriteAll(viewer, matvals, nz, PETSC_DECIDE, PETSC_DECIDE, PETSC_SCALAR)); 11989566063dSJacob Faibussowitsch PetscCall(PetscFree(matvals)); 1199660746e0SBarry Smith 1200b51a4376SLisandro Dalcin /* write block size option to the viewer's .info file */ 12019566063dSJacob Faibussowitsch PetscCall(MatView_Binary_BlockSizes(mat, viewer)); 12023ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1203660746e0SBarry Smith } 1204660746e0SBarry Smith 1205d71ae5a4SJacob Faibussowitsch PetscErrorCode MatView_MPIBAIJ(Mat mat, PetscViewer viewer) 1206d71ae5a4SJacob Faibussowitsch { 12079f196a02SMartin Diehl PetscBool isascii, isdraw, issocket, isbinary; 120857b952d6SSatish Balay 1209d64ed03dSBarry Smith PetscFunctionBegin; 12109f196a02SMartin Diehl PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &isascii)); 12119566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERDRAW, &isdraw)); 12129566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERSOCKET, &issocket)); 12139566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary)); 1214ac530a7eSPierre Jolivet if (isascii || isdraw || issocket) PetscCall(MatView_MPIBAIJ_ASCIIorDraworSocket(mat, viewer)); 1215ac530a7eSPierre Jolivet else if (isbinary) PetscCall(MatView_MPIBAIJ_Binary(mat, viewer)); 12163ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 121757b952d6SSatish Balay } 121857b952d6SSatish Balay 121966976f2fSJacob Faibussowitsch static PetscErrorCode MatMult_MPIBAIJ(Mat A, Vec xx, Vec yy) 1220d71ae5a4SJacob Faibussowitsch { 1221cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 1222b24ad042SBarry Smith PetscInt nt; 1223cee3aa6bSSatish Balay 1224d64ed03dSBarry Smith PetscFunctionBegin; 12259566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(xx, &nt)); 12265f80ce2aSJacob Faibussowitsch PetscCheck(nt == A->cmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Incompatible partition of A and xx"); 12279566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(yy, &nt)); 1228da81f932SPierre Jolivet PetscCheck(nt == A->rmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Incompatible partition of A and yy"); 12299566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(a->Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD)); 12309566063dSJacob Faibussowitsch PetscCall((*a->A->ops->mult)(a->A, xx, yy)); 12319566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(a->Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD)); 12329566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multadd)(a->B, a->lvec, yy, yy)); 12333ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1234cee3aa6bSSatish Balay } 1235cee3aa6bSSatish Balay 123666976f2fSJacob Faibussowitsch static PetscErrorCode MatMultAdd_MPIBAIJ(Mat A, Vec xx, Vec yy, Vec zz) 1237d71ae5a4SJacob Faibussowitsch { 1238cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 1239d64ed03dSBarry Smith 1240d64ed03dSBarry Smith PetscFunctionBegin; 12419566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(a->Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD)); 12429566063dSJacob Faibussowitsch PetscCall((*a->A->ops->multadd)(a->A, xx, yy, zz)); 12439566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(a->Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD)); 12449566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multadd)(a->B, a->lvec, zz, zz)); 12453ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1246cee3aa6bSSatish Balay } 1247cee3aa6bSSatish Balay 124866976f2fSJacob Faibussowitsch static PetscErrorCode MatMultTranspose_MPIBAIJ(Mat A, Vec xx, Vec yy) 1249d71ae5a4SJacob Faibussowitsch { 1250cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 1251cee3aa6bSSatish Balay 1252d64ed03dSBarry Smith PetscFunctionBegin; 1253cee3aa6bSSatish Balay /* do nondiagonal part */ 12549566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multtranspose)(a->B, xx, a->lvec)); 1255cee3aa6bSSatish Balay /* do local part */ 12569566063dSJacob Faibussowitsch PetscCall((*a->A->ops->multtranspose)(a->A, xx, yy)); 1257e4a140f6SJunchao Zhang /* add partial results together */ 12589566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(a->Mvctx, a->lvec, yy, ADD_VALUES, SCATTER_REVERSE)); 12599566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(a->Mvctx, a->lvec, yy, ADD_VALUES, SCATTER_REVERSE)); 12603ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1261cee3aa6bSSatish Balay } 1262cee3aa6bSSatish Balay 126366976f2fSJacob Faibussowitsch static PetscErrorCode MatMultTransposeAdd_MPIBAIJ(Mat A, Vec xx, Vec yy, Vec zz) 1264d71ae5a4SJacob Faibussowitsch { 1265cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 1266cee3aa6bSSatish Balay 1267d64ed03dSBarry Smith PetscFunctionBegin; 1268cee3aa6bSSatish Balay /* do nondiagonal part */ 12699566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multtranspose)(a->B, xx, a->lvec)); 1270cee3aa6bSSatish Balay /* do local part */ 12719566063dSJacob Faibussowitsch PetscCall((*a->A->ops->multtransposeadd)(a->A, xx, yy, zz)); 1272e4a140f6SJunchao Zhang /* add partial results together */ 12739566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(a->Mvctx, a->lvec, zz, ADD_VALUES, SCATTER_REVERSE)); 12749566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(a->Mvctx, a->lvec, zz, ADD_VALUES, SCATTER_REVERSE)); 12753ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1276cee3aa6bSSatish Balay } 1277cee3aa6bSSatish Balay 1278cee3aa6bSSatish Balay /* 1279cee3aa6bSSatish Balay This only works correctly for square matrices where the subblock A->A is the 1280cee3aa6bSSatish Balay diagonal block 1281cee3aa6bSSatish Balay */ 128266976f2fSJacob Faibussowitsch static PetscErrorCode MatGetDiagonal_MPIBAIJ(Mat A, Vec v) 1283d71ae5a4SJacob Faibussowitsch { 1284d64ed03dSBarry Smith PetscFunctionBegin; 12855f80ce2aSJacob Faibussowitsch PetscCheck(A->rmap->N == A->cmap->N, PETSC_COMM_SELF, PETSC_ERR_SUP, "Supports only square matrix where A->A is diag block"); 12869566063dSJacob Faibussowitsch PetscCall(MatGetDiagonal(((Mat_MPIBAIJ *)A->data)->A, v)); 12873ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1288cee3aa6bSSatish Balay } 1289cee3aa6bSSatish Balay 129066976f2fSJacob Faibussowitsch static PetscErrorCode MatScale_MPIBAIJ(Mat A, PetscScalar aa) 1291d71ae5a4SJacob Faibussowitsch { 1292cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 1293d64ed03dSBarry Smith 1294d64ed03dSBarry Smith PetscFunctionBegin; 12959566063dSJacob Faibussowitsch PetscCall(MatScale(a->A, aa)); 12969566063dSJacob Faibussowitsch PetscCall(MatScale(a->B, aa)); 12973ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1298cee3aa6bSSatish Balay } 1299026e39d0SSatish Balay 1300523895eeSPierre Jolivet static PetscErrorCode MatGetRow_MPIBAIJ(Mat matin, PetscInt row, PetscInt *nz, PetscInt **idx, PetscScalar **v) 1301d71ae5a4SJacob Faibussowitsch { 1302acdf5bf4SSatish Balay Mat_MPIBAIJ *mat = (Mat_MPIBAIJ *)matin->data; 130387828ca2SBarry Smith PetscScalar *vworkA, *vworkB, **pvA, **pvB, *v_p; 1304d0f46423SBarry Smith PetscInt bs = matin->rmap->bs, bs2 = mat->bs2, i, *cworkA, *cworkB, **pcA, **pcB; 1305d0f46423SBarry Smith PetscInt nztot, nzA, nzB, lrow, brstart = matin->rmap->rstart, brend = matin->rmap->rend; 1306899cda47SBarry Smith PetscInt *cmap, *idx_p, cstart = mat->cstartbs; 1307acdf5bf4SSatish Balay 1308d64ed03dSBarry Smith PetscFunctionBegin; 13095f80ce2aSJacob Faibussowitsch PetscCheck(row >= brstart && row < brend, PETSC_COMM_SELF, PETSC_ERR_SUP, "Only local rows"); 13105f80ce2aSJacob Faibussowitsch PetscCheck(!mat->getrowactive, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Already active"); 1311acdf5bf4SSatish Balay mat->getrowactive = PETSC_TRUE; 1312acdf5bf4SSatish Balay 1313acdf5bf4SSatish Balay if (!mat->rowvalues && (idx || v)) { 1314acdf5bf4SSatish Balay /* 1315acdf5bf4SSatish Balay allocate enough space to hold information from the longest row. 1316acdf5bf4SSatish Balay */ 1317acdf5bf4SSatish Balay Mat_SeqBAIJ *Aa = (Mat_SeqBAIJ *)mat->A->data, *Ba = (Mat_SeqBAIJ *)mat->B->data; 1318b24ad042SBarry Smith PetscInt max = 1, mbs = mat->mbs, tmp; 1319bd16c2feSSatish Balay for (i = 0; i < mbs; i++) { 1320acdf5bf4SSatish Balay tmp = Aa->i[i + 1] - Aa->i[i] + Ba->i[i + 1] - Ba->i[i]; 132126fbe8dcSKarl Rupp if (max < tmp) max = tmp; 1322acdf5bf4SSatish Balay } 13239566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(max * bs2, &mat->rowvalues, max * bs2, &mat->rowindices)); 1324acdf5bf4SSatish Balay } 1325d9d09a02SSatish Balay lrow = row - brstart; 1326acdf5bf4SSatish Balay 13279371c9d4SSatish Balay pvA = &vworkA; 13289371c9d4SSatish Balay pcA = &cworkA; 13299371c9d4SSatish Balay pvB = &vworkB; 13309371c9d4SSatish Balay pcB = &cworkB; 13319371c9d4SSatish Balay if (!v) { 13329371c9d4SSatish Balay pvA = NULL; 13339371c9d4SSatish Balay pvB = NULL; 13349371c9d4SSatish Balay } 13359371c9d4SSatish Balay if (!idx) { 13369371c9d4SSatish Balay pcA = NULL; 13379371c9d4SSatish Balay if (!v) pcB = NULL; 13389371c9d4SSatish Balay } 13399566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->getrow)(mat->A, lrow, &nzA, pcA, pvA)); 13409566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->getrow)(mat->B, lrow, &nzB, pcB, pvB)); 1341acdf5bf4SSatish Balay nztot = nzA + nzB; 1342acdf5bf4SSatish Balay 1343acdf5bf4SSatish Balay cmap = mat->garray; 1344acdf5bf4SSatish Balay if (v || idx) { 1345acdf5bf4SSatish Balay if (nztot) { 1346acdf5bf4SSatish Balay /* Sort by increasing column numbers, assuming A and B already sorted */ 1347b24ad042SBarry Smith PetscInt imark = -1; 1348acdf5bf4SSatish Balay if (v) { 1349acdf5bf4SSatish Balay *v = v_p = mat->rowvalues; 1350acdf5bf4SSatish Balay for (i = 0; i < nzB; i++) { 1351d9d09a02SSatish Balay if (cmap[cworkB[i] / bs] < cstart) v_p[i] = vworkB[i]; 1352acdf5bf4SSatish Balay else break; 1353acdf5bf4SSatish Balay } 1354acdf5bf4SSatish Balay imark = i; 1355acdf5bf4SSatish Balay for (i = 0; i < nzA; i++) v_p[imark + i] = vworkA[i]; 1356acdf5bf4SSatish Balay for (i = imark; i < nzB; i++) v_p[nzA + i] = vworkB[i]; 1357acdf5bf4SSatish Balay } 1358acdf5bf4SSatish Balay if (idx) { 1359acdf5bf4SSatish Balay *idx = idx_p = mat->rowindices; 1360acdf5bf4SSatish Balay if (imark > -1) { 1361ad540459SPierre Jolivet for (i = 0; i < imark; i++) idx_p[i] = cmap[cworkB[i] / bs] * bs + cworkB[i] % bs; 1362acdf5bf4SSatish Balay } else { 1363acdf5bf4SSatish Balay for (i = 0; i < nzB; i++) { 136426fbe8dcSKarl Rupp if (cmap[cworkB[i] / bs] < cstart) idx_p[i] = cmap[cworkB[i] / bs] * bs + cworkB[i] % bs; 1365acdf5bf4SSatish Balay else break; 1366acdf5bf4SSatish Balay } 1367acdf5bf4SSatish Balay imark = i; 1368acdf5bf4SSatish Balay } 1369d9d09a02SSatish Balay for (i = 0; i < nzA; i++) idx_p[imark + i] = cstart * bs + cworkA[i]; 1370d9d09a02SSatish Balay for (i = imark; i < nzB; i++) idx_p[nzA + i] = cmap[cworkB[i] / bs] * bs + cworkB[i] % bs; 1371acdf5bf4SSatish Balay } 1372d64ed03dSBarry Smith } else { 1373f4259b30SLisandro Dalcin if (idx) *idx = NULL; 1374f4259b30SLisandro Dalcin if (v) *v = NULL; 1375d212a18eSSatish Balay } 1376acdf5bf4SSatish Balay } 1377acdf5bf4SSatish Balay *nz = nztot; 13789566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->restorerow)(mat->A, lrow, &nzA, pcA, pvA)); 13799566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->restorerow)(mat->B, lrow, &nzB, pcB, pvB)); 13803ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1381acdf5bf4SSatish Balay } 1382acdf5bf4SSatish Balay 1383523895eeSPierre Jolivet static PetscErrorCode MatRestoreRow_MPIBAIJ(Mat mat, PetscInt row, PetscInt *nz, PetscInt **idx, PetscScalar **v) 1384d71ae5a4SJacob Faibussowitsch { 1385acdf5bf4SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 1386d64ed03dSBarry Smith 1387d64ed03dSBarry Smith PetscFunctionBegin; 13885f80ce2aSJacob Faibussowitsch PetscCheck(baij->getrowactive, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "MatGetRow not called"); 1389acdf5bf4SSatish Balay baij->getrowactive = PETSC_FALSE; 13903ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1391acdf5bf4SSatish Balay } 1392acdf5bf4SSatish Balay 139366976f2fSJacob Faibussowitsch static PetscErrorCode MatZeroEntries_MPIBAIJ(Mat A) 1394d71ae5a4SJacob Faibussowitsch { 139558667388SSatish Balay Mat_MPIBAIJ *l = (Mat_MPIBAIJ *)A->data; 1396d64ed03dSBarry Smith 1397d64ed03dSBarry Smith PetscFunctionBegin; 13989566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(l->A)); 13999566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(l->B)); 14003ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 140158667388SSatish Balay } 14020ac07820SSatish Balay 140366976f2fSJacob Faibussowitsch static PetscErrorCode MatGetInfo_MPIBAIJ(Mat matin, MatInfoType flag, MatInfo *info) 1404d71ae5a4SJacob Faibussowitsch { 14054e220ebcSLois Curfman McInnes Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)matin->data; 14064e220ebcSLois Curfman McInnes Mat A = a->A, B = a->B; 14073966268fSBarry Smith PetscLogDouble isend[5], irecv[5]; 14080ac07820SSatish Balay 1409d64ed03dSBarry Smith PetscFunctionBegin; 1410d0f46423SBarry Smith info->block_size = (PetscReal)matin->rmap->bs; 141126fbe8dcSKarl Rupp 14129566063dSJacob Faibussowitsch PetscCall(MatGetInfo(A, MAT_LOCAL, info)); 141326fbe8dcSKarl Rupp 14149371c9d4SSatish Balay isend[0] = info->nz_used; 14159371c9d4SSatish Balay isend[1] = info->nz_allocated; 14169371c9d4SSatish Balay isend[2] = info->nz_unneeded; 14179371c9d4SSatish Balay isend[3] = info->memory; 14189371c9d4SSatish Balay isend[4] = info->mallocs; 141926fbe8dcSKarl Rupp 14209566063dSJacob Faibussowitsch PetscCall(MatGetInfo(B, MAT_LOCAL, info)); 142126fbe8dcSKarl Rupp 14229371c9d4SSatish Balay isend[0] += info->nz_used; 14239371c9d4SSatish Balay isend[1] += info->nz_allocated; 14249371c9d4SSatish Balay isend[2] += info->nz_unneeded; 14259371c9d4SSatish Balay isend[3] += info->memory; 14269371c9d4SSatish Balay isend[4] += info->mallocs; 142726fbe8dcSKarl Rupp 14280ac07820SSatish Balay if (flag == MAT_LOCAL) { 14294e220ebcSLois Curfman McInnes info->nz_used = isend[0]; 14304e220ebcSLois Curfman McInnes info->nz_allocated = isend[1]; 14314e220ebcSLois Curfman McInnes info->nz_unneeded = isend[2]; 14324e220ebcSLois Curfman McInnes info->memory = isend[3]; 14334e220ebcSLois Curfman McInnes info->mallocs = isend[4]; 14340ac07820SSatish Balay } else if (flag == MAT_GLOBAL_MAX) { 1435462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(isend, irecv, 5, MPIU_PETSCLOGDOUBLE, MPI_MAX, PetscObjectComm((PetscObject)matin))); 143626fbe8dcSKarl Rupp 14374e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 14384e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 14394e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 14404e220ebcSLois Curfman McInnes info->memory = irecv[3]; 14414e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 14420ac07820SSatish Balay } else if (flag == MAT_GLOBAL_SUM) { 1443462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(isend, irecv, 5, MPIU_PETSCLOGDOUBLE, MPI_SUM, PetscObjectComm((PetscObject)matin))); 144426fbe8dcSKarl Rupp 14454e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 14464e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 14474e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 14484e220ebcSLois Curfman McInnes info->memory = irecv[3]; 14494e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 145098921bdaSJacob Faibussowitsch } else SETERRQ(PetscObjectComm((PetscObject)matin), PETSC_ERR_ARG_WRONG, "Unknown MatInfoType argument %d", (int)flag); 14514e220ebcSLois Curfman McInnes info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */ 14524e220ebcSLois Curfman McInnes info->fill_ratio_needed = 0; 14534e220ebcSLois Curfman McInnes info->factor_mallocs = 0; 14543ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 14550ac07820SSatish Balay } 14560ac07820SSatish Balay 145766976f2fSJacob Faibussowitsch static PetscErrorCode MatSetOption_MPIBAIJ(Mat A, MatOption op, PetscBool flg) 1458d71ae5a4SJacob Faibussowitsch { 145958667388SSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 146058667388SSatish Balay 1461d64ed03dSBarry Smith PetscFunctionBegin; 146212c028f9SKris Buschelman switch (op) { 1463512a5fc5SBarry Smith case MAT_NEW_NONZERO_LOCATIONS: 146412c028f9SKris Buschelman case MAT_NEW_NONZERO_ALLOCATION_ERR: 146528b2fa4aSMatthew Knepley case MAT_UNUSED_NONZERO_LOCATION_ERR: 1466a9817697SBarry Smith case MAT_KEEP_NONZERO_PATTERN: 146712c028f9SKris Buschelman case MAT_NEW_NONZERO_LOCATION_ERR: 146843674050SBarry Smith MatCheckPreallocated(A, 1); 14699566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->A, op, flg)); 14709566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->B, op, flg)); 147112c028f9SKris Buschelman break; 147212c028f9SKris Buschelman case MAT_ROW_ORIENTED: 147343674050SBarry Smith MatCheckPreallocated(A, 1); 14744e0d8c25SBarry Smith a->roworiented = flg; 147526fbe8dcSKarl Rupp 14769566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->A, op, flg)); 14779566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->B, op, flg)); 147812c028f9SKris Buschelman break; 1479d71ae5a4SJacob Faibussowitsch case MAT_IGNORE_OFF_PROC_ENTRIES: 1480d71ae5a4SJacob Faibussowitsch a->donotstash = flg; 1481d71ae5a4SJacob Faibussowitsch break; 148212c028f9SKris Buschelman case MAT_USE_HASH_TABLE: 14834e0d8c25SBarry Smith a->ht_flag = flg; 1484abf3b562SBarry Smith a->ht_fact = 1.39; 148512c028f9SKris Buschelman break; 148677e54ba9SKris Buschelman case MAT_SYMMETRIC: 148777e54ba9SKris Buschelman case MAT_STRUCTURALLY_SYMMETRIC: 14882188ac68SBarry Smith case MAT_HERMITIAN: 14892188ac68SBarry Smith case MAT_SYMMETRY_ETERNAL: 1490b94d7dedSBarry Smith case MAT_STRUCTURAL_SYMMETRY_ETERNAL: 1491b94d7dedSBarry Smith case MAT_SPD_ETERNAL: 1492b94d7dedSBarry Smith /* if the diagonal matrix is square it inherits some of the properties above */ 14939725ddffSPierre Jolivet if (a->A && A->rmap->n == A->cmap->n) PetscCall(MatSetOption(a->A, op, flg)); 149477e54ba9SKris Buschelman break; 1495d71ae5a4SJacob Faibussowitsch default: 1496888c827cSStefano Zampini break; 1497d64ed03dSBarry Smith } 14983ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 149958667388SSatish Balay } 150058667388SSatish Balay 150166976f2fSJacob Faibussowitsch static PetscErrorCode MatTranspose_MPIBAIJ(Mat A, MatReuse reuse, Mat *matout) 1502d71ae5a4SJacob Faibussowitsch { 15030ac07820SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)A->data; 15040ac07820SSatish Balay Mat_SeqBAIJ *Aloc; 15050ac07820SSatish Balay Mat B; 1506d0f46423SBarry Smith PetscInt M = A->rmap->N, N = A->cmap->N, *ai, *aj, i, *rvals, j, k, col; 1507d0f46423SBarry Smith PetscInt bs = A->rmap->bs, mbs = baij->mbs; 15083eda8832SBarry Smith MatScalar *a; 15090ac07820SSatish Balay 1510d64ed03dSBarry Smith PetscFunctionBegin; 15117fb60732SBarry Smith if (reuse == MAT_REUSE_MATRIX) PetscCall(MatTransposeCheckNonzeroState_Private(A, *matout)); 1512cf37664fSBarry Smith if (reuse == MAT_INITIAL_MATRIX || reuse == MAT_INPLACE_MATRIX) { 15139566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)A), &B)); 15149566063dSJacob Faibussowitsch PetscCall(MatSetSizes(B, A->cmap->n, A->rmap->n, N, M)); 15159566063dSJacob Faibussowitsch PetscCall(MatSetType(B, ((PetscObject)A)->type_name)); 15162e72b8d9SBarry Smith /* Do not know preallocation information, but must set block size */ 15179566063dSJacob Faibussowitsch PetscCall(MatMPIBAIJSetPreallocation(B, A->rmap->bs, PETSC_DECIDE, NULL, PETSC_DECIDE, NULL)); 1518fc4dec0aSBarry Smith } else { 1519fc4dec0aSBarry Smith B = *matout; 1520fc4dec0aSBarry Smith } 15210ac07820SSatish Balay 15220ac07820SSatish Balay /* copy over the A part */ 15230ac07820SSatish Balay Aloc = (Mat_SeqBAIJ *)baij->A->data; 15249371c9d4SSatish Balay ai = Aloc->i; 15259371c9d4SSatish Balay aj = Aloc->j; 15269371c9d4SSatish Balay a = Aloc->a; 15279566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(bs, &rvals)); 15280ac07820SSatish Balay 15290ac07820SSatish Balay for (i = 0; i < mbs; i++) { 1530899cda47SBarry Smith rvals[0] = bs * (baij->rstartbs + i); 153126fbe8dcSKarl Rupp for (j = 1; j < bs; j++) rvals[j] = rvals[j - 1] + 1; 15320ac07820SSatish Balay for (j = ai[i]; j < ai[i + 1]; j++) { 1533899cda47SBarry Smith col = (baij->cstartbs + aj[j]) * bs; 15340ac07820SSatish Balay for (k = 0; k < bs; k++) { 15359566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPIBAIJ(B, 1, &col, bs, rvals, a, INSERT_VALUES)); 153626fbe8dcSKarl Rupp 15379371c9d4SSatish Balay col++; 15389371c9d4SSatish Balay a += bs; 15390ac07820SSatish Balay } 15400ac07820SSatish Balay } 15410ac07820SSatish Balay } 15420ac07820SSatish Balay /* copy over the B part */ 15430ac07820SSatish Balay Aloc = (Mat_SeqBAIJ *)baij->B->data; 15449371c9d4SSatish Balay ai = Aloc->i; 15459371c9d4SSatish Balay aj = Aloc->j; 15469371c9d4SSatish Balay a = Aloc->a; 15470ac07820SSatish Balay for (i = 0; i < mbs; i++) { 1548899cda47SBarry Smith rvals[0] = bs * (baij->rstartbs + i); 154926fbe8dcSKarl Rupp for (j = 1; j < bs; j++) rvals[j] = rvals[j - 1] + 1; 15500ac07820SSatish Balay for (j = ai[i]; j < ai[i + 1]; j++) { 15510ac07820SSatish Balay col = baij->garray[aj[j]] * bs; 15520ac07820SSatish Balay for (k = 0; k < bs; k++) { 15539566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPIBAIJ(B, 1, &col, bs, rvals, a, INSERT_VALUES)); 155426fbe8dcSKarl Rupp col++; 155526fbe8dcSKarl Rupp a += bs; 15560ac07820SSatish Balay } 15570ac07820SSatish Balay } 15580ac07820SSatish Balay } 15599566063dSJacob Faibussowitsch PetscCall(PetscFree(rvals)); 15609566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY)); 15619566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY)); 15620ac07820SSatish Balay 1563cf37664fSBarry Smith if (reuse == MAT_INITIAL_MATRIX || reuse == MAT_REUSE_MATRIX) *matout = B; 156448a46eb9SPierre Jolivet else PetscCall(MatHeaderMerge(A, &B)); 15653ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 15660ac07820SSatish Balay } 15670e95ebc0SSatish Balay 156866976f2fSJacob Faibussowitsch static PetscErrorCode MatDiagonalScale_MPIBAIJ(Mat mat, Vec ll, Vec rr) 1569d71ae5a4SJacob Faibussowitsch { 157036c4a09eSSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 157136c4a09eSSatish Balay Mat a = baij->A, b = baij->B; 1572b24ad042SBarry Smith PetscInt s1, s2, s3; 15730e95ebc0SSatish Balay 1574d64ed03dSBarry Smith PetscFunctionBegin; 15759566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(mat, &s2, &s3)); 157636c4a09eSSatish Balay if (rr) { 15779566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(rr, &s1)); 15785f80ce2aSJacob Faibussowitsch PetscCheck(s1 == s3, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "right vector non-conforming local size"); 157936c4a09eSSatish Balay /* Overlap communication with computation. */ 15809566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(baij->Mvctx, rr, baij->lvec, INSERT_VALUES, SCATTER_FORWARD)); 158136c4a09eSSatish Balay } 15820e95ebc0SSatish Balay if (ll) { 15839566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(ll, &s1)); 15845f80ce2aSJacob Faibussowitsch PetscCheck(s1 == s2, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "left vector non-conforming local size"); 1585dbbe0bcdSBarry Smith PetscUseTypeMethod(b, diagonalscale, ll, NULL); 15860e95ebc0SSatish Balay } 158736c4a09eSSatish Balay /* scale the diagonal block */ 1588dbbe0bcdSBarry Smith PetscUseTypeMethod(a, diagonalscale, ll, rr); 158936c4a09eSSatish Balay 159036c4a09eSSatish Balay if (rr) { 159136c4a09eSSatish Balay /* Do a scatter end and then right scale the off-diagonal block */ 15929566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(baij->Mvctx, rr, baij->lvec, INSERT_VALUES, SCATTER_FORWARD)); 1593dbbe0bcdSBarry Smith PetscUseTypeMethod(b, diagonalscale, NULL, baij->lvec); 159436c4a09eSSatish Balay } 15953ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 15960e95ebc0SSatish Balay } 15970e95ebc0SSatish Balay 159866976f2fSJacob Faibussowitsch static PetscErrorCode MatZeroRows_MPIBAIJ(Mat A, PetscInt N, const PetscInt rows[], PetscScalar diag, Vec x, Vec b) 1599d71ae5a4SJacob Faibussowitsch { 16000ac07820SSatish Balay Mat_MPIBAIJ *l = (Mat_MPIBAIJ *)A->data; 160165a92638SMatthew G. Knepley PetscInt *lrows; 16026e520ac8SStefano Zampini PetscInt r, len; 160394342113SStefano Zampini PetscBool cong; 16040ac07820SSatish Balay 1605d64ed03dSBarry Smith PetscFunctionBegin; 16066e520ac8SStefano Zampini /* get locally owned rows */ 16079566063dSJacob Faibussowitsch PetscCall(MatZeroRowsMapLocal_Private(A, N, rows, &len, &lrows)); 1608dd8e379bSPierre Jolivet /* fix right-hand side if needed */ 160997b48c8fSBarry Smith if (x && b) { 161065a92638SMatthew G. Knepley const PetscScalar *xx; 161165a92638SMatthew G. Knepley PetscScalar *bb; 161265a92638SMatthew G. Knepley 16139566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(x, &xx)); 16149566063dSJacob Faibussowitsch PetscCall(VecGetArray(b, &bb)); 161565a92638SMatthew G. Knepley for (r = 0; r < len; ++r) bb[lrows[r]] = diag * xx[lrows[r]]; 16169566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(x, &xx)); 16179566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(b, &bb)); 161897b48c8fSBarry Smith } 161997b48c8fSBarry Smith 16200ac07820SSatish Balay /* actually zap the local rows */ 162172dacd9aSBarry Smith /* 162272dacd9aSBarry Smith Zero the required rows. If the "diagonal block" of the matrix 1623a8c7a070SBarry Smith is square and the user wishes to set the diagonal we use separate 162472dacd9aSBarry Smith code so that MatSetValues() is not called for each diagonal allocating 162572dacd9aSBarry Smith new memory, thus calling lots of mallocs and slowing things down. 162672dacd9aSBarry Smith 162772dacd9aSBarry Smith */ 16289c957beeSSatish Balay /* must zero l->B before l->A because the (diag) case below may put values into l->B*/ 16299566063dSJacob Faibussowitsch PetscCall(MatZeroRows_SeqBAIJ(l->B, len, lrows, 0.0, NULL, NULL)); 16309566063dSJacob Faibussowitsch PetscCall(MatHasCongruentLayouts(A, &cong)); 163194342113SStefano Zampini if ((diag != 0.0) && cong) { 16329566063dSJacob Faibussowitsch PetscCall(MatZeroRows_SeqBAIJ(l->A, len, lrows, diag, NULL, NULL)); 1633f4df32b1SMatthew Knepley } else if (diag != 0.0) { 16349566063dSJacob Faibussowitsch PetscCall(MatZeroRows_SeqBAIJ(l->A, len, lrows, 0.0, NULL, NULL)); 163500045ab3SPierre Jolivet PetscCheck(!((Mat_SeqBAIJ *)l->A->data)->nonew, PETSC_COMM_SELF, PETSC_ERR_SUP, "MatZeroRows() on rectangular matrices cannot be used with the Mat options MAT_NEW_NONZERO_LOCATIONS, MAT_NEW_NONZERO_LOCATION_ERR, and MAT_NEW_NONZERO_ALLOCATION_ERR"); 163665a92638SMatthew G. Knepley for (r = 0; r < len; ++r) { 163765a92638SMatthew G. Knepley const PetscInt row = lrows[r] + A->rmap->rstart; 16389566063dSJacob Faibussowitsch PetscCall(MatSetValues(A, 1, &row, 1, &row, &diag, INSERT_VALUES)); 1639a07cd24cSSatish Balay } 16409566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(A, MAT_FINAL_ASSEMBLY)); 16419566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(A, MAT_FINAL_ASSEMBLY)); 16429c957beeSSatish Balay } else { 16439566063dSJacob Faibussowitsch PetscCall(MatZeroRows_SeqBAIJ(l->A, len, lrows, 0.0, NULL, NULL)); 1644a07cd24cSSatish Balay } 16459566063dSJacob Faibussowitsch PetscCall(PetscFree(lrows)); 16464f9cfa9eSBarry Smith 16474f9cfa9eSBarry Smith /* only change matrix nonzero state if pattern was allowed to be changed */ 1648f4f49eeaSPierre Jolivet if (!((Mat_SeqBAIJ *)l->A->data)->keepnonzeropattern || !((Mat_SeqBAIJ *)l->A->data)->nonew) { 1649e56f5c9eSBarry Smith PetscObjectState state = l->A->nonzerostate + l->B->nonzerostate; 1650462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&state, &A->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)A))); 1651e56f5c9eSBarry Smith } 16523ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 16530ac07820SSatish Balay } 165472dacd9aSBarry Smith 165566976f2fSJacob Faibussowitsch static PetscErrorCode MatZeroRowsColumns_MPIBAIJ(Mat A, PetscInt N, const PetscInt rows[], PetscScalar diag, Vec x, Vec b) 1656d71ae5a4SJacob Faibussowitsch { 16576f0a72daSMatthew G. Knepley Mat_MPIBAIJ *l = (Mat_MPIBAIJ *)A->data; 16586497c311SBarry Smith PetscMPIInt n, p = 0; 1659131c27b5Sprj- PetscInt i, j, k, r, len = 0, row, col, count; 16606f0a72daSMatthew G. Knepley PetscInt *lrows, *owners = A->rmap->range; 16616f0a72daSMatthew G. Knepley PetscSFNode *rrows; 16626f0a72daSMatthew G. Knepley PetscSF sf; 16636f0a72daSMatthew G. Knepley const PetscScalar *xx; 16646f0a72daSMatthew G. Knepley PetscScalar *bb, *mask; 16656f0a72daSMatthew G. Knepley Vec xmask, lmask; 16666f0a72daSMatthew G. Knepley Mat_SeqBAIJ *baij = (Mat_SeqBAIJ *)l->B->data; 16676f0a72daSMatthew G. Knepley PetscInt bs = A->rmap->bs, bs2 = baij->bs2; 16686f0a72daSMatthew G. Knepley PetscScalar *aa; 16696f0a72daSMatthew G. Knepley 16706f0a72daSMatthew G. Knepley PetscFunctionBegin; 16716497c311SBarry Smith PetscCall(PetscMPIIntCast(A->rmap->n, &n)); 16726f0a72daSMatthew G. Knepley /* Create SF where leaves are input rows and roots are owned rows */ 16739566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(n, &lrows)); 16746f0a72daSMatthew G. Knepley for (r = 0; r < n; ++r) lrows[r] = -1; 16759566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(N, &rrows)); 16766f0a72daSMatthew G. Knepley for (r = 0; r < N; ++r) { 16776f0a72daSMatthew G. Knepley const PetscInt idx = rows[r]; 16785f80ce2aSJacob Faibussowitsch PetscCheck(idx >= 0 && A->rmap->N > idx, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row %" PetscInt_FMT " out of range [0,%" PetscInt_FMT ")", idx, A->rmap->N); 16795ba17502SJed Brown if (idx < owners[p] || owners[p + 1] <= idx) { /* short-circuit the search if the last p owns this row too */ 16809566063dSJacob Faibussowitsch PetscCall(PetscLayoutFindOwner(A->rmap, idx, &p)); 16815ba17502SJed Brown } 16826f0a72daSMatthew G. Knepley rrows[r].rank = p; 16836f0a72daSMatthew G. Knepley rrows[r].index = rows[r] - owners[p]; 16846f0a72daSMatthew G. Knepley } 16859566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)A), &sf)); 16869566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(sf, n, N, NULL, PETSC_OWN_POINTER, rrows, PETSC_OWN_POINTER)); 16876f0a72daSMatthew G. Knepley /* Collect flags for rows to be zeroed */ 16889566063dSJacob Faibussowitsch PetscCall(PetscSFReduceBegin(sf, MPIU_INT, (PetscInt *)rows, lrows, MPI_LOR)); 16899566063dSJacob Faibussowitsch PetscCall(PetscSFReduceEnd(sf, MPIU_INT, (PetscInt *)rows, lrows, MPI_LOR)); 16909566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&sf)); 16916f0a72daSMatthew G. Knepley /* Compress and put in row numbers */ 16929371c9d4SSatish Balay for (r = 0; r < n; ++r) 16939371c9d4SSatish Balay if (lrows[r] >= 0) lrows[len++] = r; 16946f0a72daSMatthew G. Knepley /* zero diagonal part of matrix */ 16959566063dSJacob Faibussowitsch PetscCall(MatZeroRowsColumns(l->A, len, lrows, diag, x, b)); 16964cf0e950SBarry Smith /* handle off-diagonal part of matrix */ 16979566063dSJacob Faibussowitsch PetscCall(MatCreateVecs(A, &xmask, NULL)); 16989566063dSJacob Faibussowitsch PetscCall(VecDuplicate(l->lvec, &lmask)); 16999566063dSJacob Faibussowitsch PetscCall(VecGetArray(xmask, &bb)); 17006f0a72daSMatthew G. Knepley for (i = 0; i < len; i++) bb[lrows[i]] = 1; 17019566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(xmask, &bb)); 17029566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(l->Mvctx, xmask, lmask, ADD_VALUES, SCATTER_FORWARD)); 17039566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(l->Mvctx, xmask, lmask, ADD_VALUES, SCATTER_FORWARD)); 17049566063dSJacob Faibussowitsch PetscCall(VecDestroy(&xmask)); 17056f0a72daSMatthew G. Knepley if (x) { 17069566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(l->Mvctx, x, l->lvec, INSERT_VALUES, SCATTER_FORWARD)); 17079566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(l->Mvctx, x, l->lvec, INSERT_VALUES, SCATTER_FORWARD)); 17089566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(l->lvec, &xx)); 17099566063dSJacob Faibussowitsch PetscCall(VecGetArray(b, &bb)); 17106f0a72daSMatthew G. Knepley } 17119566063dSJacob Faibussowitsch PetscCall(VecGetArray(lmask, &mask)); 17124cf0e950SBarry Smith /* remove zeroed rows of off-diagonal matrix */ 17136f0a72daSMatthew G. Knepley for (i = 0; i < len; ++i) { 17146f0a72daSMatthew G. Knepley row = lrows[i]; 17156f0a72daSMatthew G. Knepley count = (baij->i[row / bs + 1] - baij->i[row / bs]) * bs; 1716835f2295SStefano Zampini aa = baij->a + baij->i[row / bs] * bs2 + (row % bs); 17176f0a72daSMatthew G. Knepley for (k = 0; k < count; ++k) { 17186f0a72daSMatthew G. Knepley aa[0] = 0.0; 17196f0a72daSMatthew G. Knepley aa += bs; 17206f0a72daSMatthew G. Knepley } 17216f0a72daSMatthew G. Knepley } 17226f0a72daSMatthew G. Knepley /* loop over all elements of off process part of matrix zeroing removed columns*/ 17236f0a72daSMatthew G. Knepley for (i = 0; i < l->B->rmap->N; ++i) { 17246f0a72daSMatthew G. Knepley row = i / bs; 17256f0a72daSMatthew G. Knepley for (j = baij->i[row]; j < baij->i[row + 1]; ++j) { 17266f0a72daSMatthew G. Knepley for (k = 0; k < bs; ++k) { 17276f0a72daSMatthew G. Knepley col = bs * baij->j[j] + k; 17286f0a72daSMatthew G. Knepley if (PetscAbsScalar(mask[col])) { 1729835f2295SStefano Zampini aa = baij->a + j * bs2 + (i % bs) + bs * k; 173089ae1891SBarry Smith if (x) bb[i] -= aa[0] * xx[col]; 17316f0a72daSMatthew G. Knepley aa[0] = 0.0; 17326f0a72daSMatthew G. Knepley } 17336f0a72daSMatthew G. Knepley } 17346f0a72daSMatthew G. Knepley } 17356f0a72daSMatthew G. Knepley } 17366f0a72daSMatthew G. Knepley if (x) { 17379566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(b, &bb)); 17389566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(l->lvec, &xx)); 17396f0a72daSMatthew G. Knepley } 17409566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(lmask, &mask)); 17419566063dSJacob Faibussowitsch PetscCall(VecDestroy(&lmask)); 17429566063dSJacob Faibussowitsch PetscCall(PetscFree(lrows)); 17434f9cfa9eSBarry Smith 17444f9cfa9eSBarry Smith /* only change matrix nonzero state if pattern was allowed to be changed */ 1745f4f49eeaSPierre Jolivet if (!((Mat_SeqBAIJ *)l->A->data)->nonew) { 17464f9cfa9eSBarry Smith PetscObjectState state = l->A->nonzerostate + l->B->nonzerostate; 1747462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&state, &A->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)A))); 17484f9cfa9eSBarry Smith } 17493ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 17506f0a72daSMatthew G. Knepley } 17516f0a72daSMatthew G. Knepley 175266976f2fSJacob Faibussowitsch static PetscErrorCode MatSetUnfactored_MPIBAIJ(Mat A) 1753d71ae5a4SJacob Faibussowitsch { 1754bb5a7306SBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 1755d64ed03dSBarry Smith 1756d64ed03dSBarry Smith PetscFunctionBegin; 17579566063dSJacob Faibussowitsch PetscCall(MatSetUnfactored(a->A)); 17583ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1759bb5a7306SBarry Smith } 1760bb5a7306SBarry Smith 17616849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIBAIJ(Mat, MatDuplicateOption, Mat *); 17620ac07820SSatish Balay 176366976f2fSJacob Faibussowitsch static PetscErrorCode MatEqual_MPIBAIJ(Mat A, Mat B, PetscBool *flag) 1764d71ae5a4SJacob Faibussowitsch { 17657fc3c18eSBarry Smith Mat_MPIBAIJ *matB = (Mat_MPIBAIJ *)B->data, *matA = (Mat_MPIBAIJ *)A->data; 17667fc3c18eSBarry Smith Mat a, b, c, d; 1767ace3abfcSBarry Smith PetscBool flg; 17687fc3c18eSBarry Smith 17697fc3c18eSBarry Smith PetscFunctionBegin; 17709371c9d4SSatish Balay a = matA->A; 17719371c9d4SSatish Balay b = matA->B; 17729371c9d4SSatish Balay c = matB->A; 17739371c9d4SSatish Balay d = matB->B; 17747fc3c18eSBarry Smith 17759566063dSJacob Faibussowitsch PetscCall(MatEqual(a, c, &flg)); 177648a46eb9SPierre Jolivet if (flg) PetscCall(MatEqual(b, d, &flg)); 17775440e5dcSBarry Smith PetscCallMPI(MPIU_Allreduce(&flg, flag, 1, MPI_C_BOOL, MPI_LAND, PetscObjectComm((PetscObject)A))); 17783ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 17797fc3c18eSBarry Smith } 17807fc3c18eSBarry Smith 178166976f2fSJacob Faibussowitsch static PetscErrorCode MatCopy_MPIBAIJ(Mat A, Mat B, MatStructure str) 1782d71ae5a4SJacob Faibussowitsch { 17833c896bc6SHong Zhang Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 17843c896bc6SHong Zhang Mat_MPIBAIJ *b = (Mat_MPIBAIJ *)B->data; 17853c896bc6SHong Zhang 17863c896bc6SHong Zhang PetscFunctionBegin; 17873c896bc6SHong Zhang /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */ 17883c896bc6SHong Zhang if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) { 17899566063dSJacob Faibussowitsch PetscCall(MatCopy_Basic(A, B, str)); 17903c896bc6SHong Zhang } else { 17919566063dSJacob Faibussowitsch PetscCall(MatCopy(a->A, b->A, str)); 17929566063dSJacob Faibussowitsch PetscCall(MatCopy(a->B, b->B, str)); 17933c896bc6SHong Zhang } 17949566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)B)); 17953ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 17963c896bc6SHong Zhang } 1797273d9f13SBarry Smith 1798d71ae5a4SJacob Faibussowitsch PetscErrorCode MatAXPYGetPreallocation_MPIBAIJ(Mat Y, const PetscInt *yltog, Mat X, const PetscInt *xltog, PetscInt *nnz) 1799d71ae5a4SJacob Faibussowitsch { 1800001ddc4fSHong Zhang PetscInt bs = Y->rmap->bs, m = Y->rmap->N / bs; 18014de5dceeSHong Zhang Mat_SeqBAIJ *x = (Mat_SeqBAIJ *)X->data; 18024de5dceeSHong Zhang Mat_SeqBAIJ *y = (Mat_SeqBAIJ *)Y->data; 18034de5dceeSHong Zhang 18044de5dceeSHong Zhang PetscFunctionBegin; 18059566063dSJacob Faibussowitsch PetscCall(MatAXPYGetPreallocation_MPIX_private(m, x->i, x->j, xltog, y->i, y->j, yltog, nnz)); 18063ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 18074de5dceeSHong Zhang } 18084de5dceeSHong Zhang 180966976f2fSJacob Faibussowitsch static PetscErrorCode MatAXPY_MPIBAIJ(Mat Y, PetscScalar a, Mat X, MatStructure str) 1810d71ae5a4SJacob Faibussowitsch { 18114fe895cdSHong Zhang Mat_MPIBAIJ *xx = (Mat_MPIBAIJ *)X->data, *yy = (Mat_MPIBAIJ *)Y->data; 18124fe895cdSHong Zhang PetscBLASInt bnz, one = 1; 18134fe895cdSHong Zhang Mat_SeqBAIJ *x, *y; 1814b31f67cfSBarry Smith PetscInt bs2 = Y->rmap->bs * Y->rmap->bs; 18154fe895cdSHong Zhang 18164fe895cdSHong Zhang PetscFunctionBegin; 18174fe895cdSHong Zhang if (str == SAME_NONZERO_PATTERN) { 18184fe895cdSHong Zhang PetscScalar alpha = a; 18194fe895cdSHong Zhang x = (Mat_SeqBAIJ *)xx->A->data; 18204fe895cdSHong Zhang y = (Mat_SeqBAIJ *)yy->A->data; 18219566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(x->nz * bs2, &bnz)); 1822792fecdfSBarry Smith PetscCallBLAS("BLASaxpy", BLASaxpy_(&bnz, &alpha, x->a, &one, y->a, &one)); 18234fe895cdSHong Zhang x = (Mat_SeqBAIJ *)xx->B->data; 18244fe895cdSHong Zhang y = (Mat_SeqBAIJ *)yy->B->data; 18259566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(x->nz * bs2, &bnz)); 1826792fecdfSBarry Smith PetscCallBLAS("BLASaxpy", BLASaxpy_(&bnz, &alpha, x->a, &one, y->a, &one)); 18279566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)Y)); 1828ab784542SHong Zhang } else if (str == SUBSET_NONZERO_PATTERN) { /* nonzeros of X is a subset of Y's */ 18299566063dSJacob Faibussowitsch PetscCall(MatAXPY_Basic(Y, a, X, str)); 18304fe895cdSHong Zhang } else { 18314de5dceeSHong Zhang Mat B; 18324de5dceeSHong Zhang PetscInt *nnz_d, *nnz_o, bs = Y->rmap->bs; 18339566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(yy->A->rmap->N, &nnz_d)); 18349566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(yy->B->rmap->N, &nnz_o)); 18359566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)Y), &B)); 18369566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)B, ((PetscObject)Y)->name)); 18379566063dSJacob Faibussowitsch PetscCall(MatSetSizes(B, Y->rmap->n, Y->cmap->n, Y->rmap->N, Y->cmap->N)); 18389566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizesFromMats(B, Y, Y)); 18399566063dSJacob Faibussowitsch PetscCall(MatSetType(B, MATMPIBAIJ)); 18409566063dSJacob Faibussowitsch PetscCall(MatAXPYGetPreallocation_SeqBAIJ(yy->A, xx->A, nnz_d)); 18419566063dSJacob Faibussowitsch PetscCall(MatAXPYGetPreallocation_MPIBAIJ(yy->B, yy->garray, xx->B, xx->garray, nnz_o)); 18429566063dSJacob Faibussowitsch PetscCall(MatMPIBAIJSetPreallocation(B, bs, 0, nnz_d, 0, nnz_o)); 18434de5dceeSHong Zhang /* MatAXPY_BasicWithPreallocation() for BAIJ matrix is much slower than AIJ, even for bs=1 ! */ 18449566063dSJacob Faibussowitsch PetscCall(MatAXPY_BasicWithPreallocation(B, Y, a, X, str)); 18459566063dSJacob Faibussowitsch PetscCall(MatHeaderMerge(Y, &B)); 18469566063dSJacob Faibussowitsch PetscCall(PetscFree(nnz_d)); 18479566063dSJacob Faibussowitsch PetscCall(PetscFree(nnz_o)); 18484fe895cdSHong Zhang } 18493ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 18504fe895cdSHong Zhang } 18514fe895cdSHong Zhang 185266976f2fSJacob Faibussowitsch static PetscErrorCode MatConjugate_MPIBAIJ(Mat mat) 1853d71ae5a4SJacob Faibussowitsch { 18545f80ce2aSJacob Faibussowitsch PetscFunctionBegin; 18555f80ce2aSJacob Faibussowitsch if (PetscDefined(USE_COMPLEX)) { 18562726fb6dSPierre Jolivet Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)mat->data; 18572726fb6dSPierre Jolivet 18589566063dSJacob Faibussowitsch PetscCall(MatConjugate_SeqBAIJ(a->A)); 18599566063dSJacob Faibussowitsch PetscCall(MatConjugate_SeqBAIJ(a->B)); 18605f80ce2aSJacob Faibussowitsch } 18613ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 18622726fb6dSPierre Jolivet } 18632726fb6dSPierre Jolivet 186466976f2fSJacob Faibussowitsch static PetscErrorCode MatRealPart_MPIBAIJ(Mat A) 1865d71ae5a4SJacob Faibussowitsch { 186699cafbc1SBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 186799cafbc1SBarry Smith 186899cafbc1SBarry Smith PetscFunctionBegin; 18699566063dSJacob Faibussowitsch PetscCall(MatRealPart(a->A)); 18709566063dSJacob Faibussowitsch PetscCall(MatRealPart(a->B)); 18713ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 187299cafbc1SBarry Smith } 187399cafbc1SBarry Smith 187466976f2fSJacob Faibussowitsch static PetscErrorCode MatImaginaryPart_MPIBAIJ(Mat A) 1875d71ae5a4SJacob Faibussowitsch { 187699cafbc1SBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 187799cafbc1SBarry Smith 187899cafbc1SBarry Smith PetscFunctionBegin; 18799566063dSJacob Faibussowitsch PetscCall(MatImaginaryPart(a->A)); 18809566063dSJacob Faibussowitsch PetscCall(MatImaginaryPart(a->B)); 18813ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 188299cafbc1SBarry Smith } 188399cafbc1SBarry Smith 188466976f2fSJacob Faibussowitsch static PetscErrorCode MatCreateSubMatrix_MPIBAIJ(Mat mat, IS isrow, IS iscol, MatReuse call, Mat *newmat) 1885d71ae5a4SJacob Faibussowitsch { 18864aa3045dSJed Brown IS iscol_local; 18874aa3045dSJed Brown PetscInt csize; 18884aa3045dSJed Brown 18894aa3045dSJed Brown PetscFunctionBegin; 18909566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol, &csize)); 1891b79d0421SJed Brown if (call == MAT_REUSE_MATRIX) { 18929566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*newmat, "ISAllGather", (PetscObject *)&iscol_local)); 18935f80ce2aSJacob Faibussowitsch PetscCheck(iscol_local, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Submatrix passed in was not used before, cannot reuse"); 1894b79d0421SJed Brown } else { 18959566063dSJacob Faibussowitsch PetscCall(ISAllGather(iscol, &iscol_local)); 1896b79d0421SJed Brown } 1897fdfbdca6SPierre Jolivet PetscCall(MatCreateSubMatrix_MPIBAIJ_Private(mat, isrow, iscol_local, csize, call, newmat, PETSC_FALSE)); 1898b79d0421SJed Brown if (call == MAT_INITIAL_MATRIX) { 18999566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)*newmat, "ISAllGather", (PetscObject)iscol_local)); 19009566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscol_local)); 1901b79d0421SJed Brown } 19023ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 19034aa3045dSJed Brown } 190417df9f7cSHong Zhang 190582094794SBarry Smith /* 190682094794SBarry Smith Not great since it makes two copies of the submatrix, first an SeqBAIJ 190782094794SBarry Smith in local and then by concatenating the local matrices the end result. 19087dae84e0SHong Zhang Writing it directly would be much like MatCreateSubMatrices_MPIBAIJ(). 19098f46ffcaSHong Zhang This routine is used for BAIJ and SBAIJ matrices (unfortunate dependency). 191082094794SBarry Smith */ 1911fdfbdca6SPierre Jolivet PetscErrorCode MatCreateSubMatrix_MPIBAIJ_Private(Mat mat, IS isrow, IS iscol, PetscInt csize, MatReuse call, Mat *newmat, PetscBool sym) 1912d71ae5a4SJacob Faibussowitsch { 191382094794SBarry Smith PetscMPIInt rank, size; 191482094794SBarry Smith PetscInt i, m, n, rstart, row, rend, nz, *cwork, j, bs; 1915c9ffca76SHong Zhang PetscInt *ii, *jj, nlocal, *dlens, *olens, dlen, olen, jend, mglobal; 191629dcf524SDmitry Karpeev Mat M, Mreuse; 191782094794SBarry Smith MatScalar *vwork, *aa; 1918ce94432eSBarry Smith MPI_Comm comm; 191929dcf524SDmitry Karpeev IS isrow_new, iscol_new; 192082094794SBarry Smith Mat_SeqBAIJ *aij; 192182094794SBarry Smith 192282094794SBarry Smith PetscFunctionBegin; 19239566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)mat, &comm)); 19249566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 19259566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 192629dcf524SDmitry Karpeev /* The compression and expansion should be avoided. Doesn't point 192729dcf524SDmitry Karpeev out errors, might change the indices, hence buggey */ 19289566063dSJacob Faibussowitsch PetscCall(ISCompressIndicesGeneral(mat->rmap->N, mat->rmap->n, mat->rmap->bs, 1, &isrow, &isrow_new)); 1929864bd19bSPierre Jolivet if (isrow == iscol) { 1930864bd19bSPierre Jolivet iscol_new = isrow_new; 1931864bd19bSPierre Jolivet PetscCall(PetscObjectReference((PetscObject)iscol_new)); 1932864bd19bSPierre Jolivet } else PetscCall(ISCompressIndicesGeneral(mat->cmap->N, mat->cmap->n, mat->cmap->bs, 1, &iscol, &iscol_new)); 193382094794SBarry Smith 193482094794SBarry Smith if (call == MAT_REUSE_MATRIX) { 19359566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*newmat, "SubMatrix", (PetscObject *)&Mreuse)); 19365f80ce2aSJacob Faibussowitsch PetscCheck(Mreuse, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Submatrix passed in was not used before, cannot reuse"); 1937fdfbdca6SPierre Jolivet PetscCall(MatCreateSubMatrices_MPIBAIJ_local(mat, 1, &isrow_new, &iscol_new, MAT_REUSE_MATRIX, &Mreuse, sym)); 193882094794SBarry Smith } else { 1939fdfbdca6SPierre Jolivet PetscCall(MatCreateSubMatrices_MPIBAIJ_local(mat, 1, &isrow_new, &iscol_new, MAT_INITIAL_MATRIX, &Mreuse, sym)); 194082094794SBarry Smith } 19419566063dSJacob Faibussowitsch PetscCall(ISDestroy(&isrow_new)); 19429566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscol_new)); 194382094794SBarry Smith /* 194482094794SBarry Smith m - number of local rows 194582094794SBarry Smith n - number of columns (same on all processors) 194682094794SBarry Smith rstart - first row in new global matrix generated 194782094794SBarry Smith */ 19489566063dSJacob Faibussowitsch PetscCall(MatGetBlockSize(mat, &bs)); 19499566063dSJacob Faibussowitsch PetscCall(MatGetSize(Mreuse, &m, &n)); 195082094794SBarry Smith m = m / bs; 195182094794SBarry Smith n = n / bs; 195282094794SBarry Smith 195382094794SBarry Smith if (call == MAT_INITIAL_MATRIX) { 195457508eceSPierre Jolivet aij = (Mat_SeqBAIJ *)Mreuse->data; 195582094794SBarry Smith ii = aij->i; 195682094794SBarry Smith jj = aij->j; 195782094794SBarry Smith 195882094794SBarry Smith /* 195982094794SBarry Smith Determine the number of non-zeros in the diagonal and off-diagonal 196082094794SBarry Smith portions of the matrix in order to do correct preallocation 196182094794SBarry Smith */ 196282094794SBarry Smith 196382094794SBarry Smith /* first get start and end of "diagonal" columns */ 196482094794SBarry Smith if (csize == PETSC_DECIDE) { 19659566063dSJacob Faibussowitsch PetscCall(ISGetSize(isrow, &mglobal)); 196682094794SBarry Smith if (mglobal == n * bs) { /* square matrix */ 196782094794SBarry Smith nlocal = m; 196882094794SBarry Smith } else { 196982094794SBarry Smith nlocal = n / size + ((n % size) > rank); 197082094794SBarry Smith } 197182094794SBarry Smith } else { 197282094794SBarry Smith nlocal = csize / bs; 197382094794SBarry Smith } 19749566063dSJacob Faibussowitsch PetscCallMPI(MPI_Scan(&nlocal, &rend, 1, MPIU_INT, MPI_SUM, comm)); 197582094794SBarry Smith rstart = rend - nlocal; 1976aed4548fSBarry Smith PetscCheck(rank != size - 1 || rend == n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Local column sizes %" PetscInt_FMT " do not add up to total number of columns %" PetscInt_FMT, rend, n); 197782094794SBarry Smith 197882094794SBarry Smith /* next, compute all the lengths */ 19799566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(m + 1, &dlens, m + 1, &olens)); 198082094794SBarry Smith for (i = 0; i < m; i++) { 198182094794SBarry Smith jend = ii[i + 1] - ii[i]; 198282094794SBarry Smith olen = 0; 198382094794SBarry Smith dlen = 0; 198482094794SBarry Smith for (j = 0; j < jend; j++) { 198582094794SBarry Smith if (*jj < rstart || *jj >= rend) olen++; 198682094794SBarry Smith else dlen++; 198782094794SBarry Smith jj++; 198882094794SBarry Smith } 198982094794SBarry Smith olens[i] = olen; 199082094794SBarry Smith dlens[i] = dlen; 199182094794SBarry Smith } 19929566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, &M)); 19939566063dSJacob Faibussowitsch PetscCall(MatSetSizes(M, bs * m, bs * nlocal, PETSC_DECIDE, bs * n)); 1994fdfbdca6SPierre Jolivet PetscCall(MatSetType(M, sym ? ((PetscObject)mat)->type_name : MATMPIBAIJ)); 19959566063dSJacob Faibussowitsch PetscCall(MatMPIBAIJSetPreallocation(M, bs, 0, dlens, 0, olens)); 19969566063dSJacob Faibussowitsch PetscCall(MatMPISBAIJSetPreallocation(M, bs, 0, dlens, 0, olens)); 19979566063dSJacob Faibussowitsch PetscCall(PetscFree2(dlens, olens)); 199882094794SBarry Smith } else { 199982094794SBarry Smith PetscInt ml, nl; 200082094794SBarry Smith 200182094794SBarry Smith M = *newmat; 20029566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(M, &ml, &nl)); 20035f80ce2aSJacob Faibussowitsch PetscCheck(ml == m, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Previous matrix must be same size/layout as request"); 20049566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(M)); 200582094794SBarry Smith /* 200682094794SBarry Smith The next two lines are needed so we may call MatSetValues_MPIAIJ() below directly, 200782094794SBarry Smith rather than the slower MatSetValues(). 200882094794SBarry Smith */ 200982094794SBarry Smith M->was_assembled = PETSC_TRUE; 201082094794SBarry Smith M->assembled = PETSC_FALSE; 201182094794SBarry Smith } 20129566063dSJacob Faibussowitsch PetscCall(MatSetOption(M, MAT_ROW_ORIENTED, PETSC_FALSE)); 20139566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(M, &rstart, &rend)); 201457508eceSPierre Jolivet aij = (Mat_SeqBAIJ *)Mreuse->data; 201582094794SBarry Smith ii = aij->i; 201682094794SBarry Smith jj = aij->j; 201782094794SBarry Smith aa = aij->a; 201882094794SBarry Smith for (i = 0; i < m; i++) { 201982094794SBarry Smith row = rstart / bs + i; 202082094794SBarry Smith nz = ii[i + 1] - ii[i]; 20219371c9d4SSatish Balay cwork = jj; 20228e3a54c0SPierre Jolivet jj = PetscSafePointerPlusOffset(jj, nz); 20239371c9d4SSatish Balay vwork = aa; 20248e3a54c0SPierre Jolivet aa = PetscSafePointerPlusOffset(aa, nz * bs * bs); 20259566063dSJacob Faibussowitsch PetscCall(MatSetValuesBlocked_MPIBAIJ(M, 1, &row, nz, cwork, vwork, INSERT_VALUES)); 202682094794SBarry Smith } 202782094794SBarry Smith 20289566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(M, MAT_FINAL_ASSEMBLY)); 20299566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(M, MAT_FINAL_ASSEMBLY)); 203082094794SBarry Smith *newmat = M; 203182094794SBarry Smith 203282094794SBarry Smith /* save submatrix used in processor for next request */ 203382094794SBarry Smith if (call == MAT_INITIAL_MATRIX) { 20349566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)M, "SubMatrix", (PetscObject)Mreuse)); 20359566063dSJacob Faibussowitsch PetscCall(PetscObjectDereference((PetscObject)Mreuse)); 203682094794SBarry Smith } 20373ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 203882094794SBarry Smith } 203982094794SBarry Smith 204066976f2fSJacob Faibussowitsch static PetscErrorCode MatPermute_MPIBAIJ(Mat A, IS rowp, IS colp, Mat *B) 2041d71ae5a4SJacob Faibussowitsch { 204282094794SBarry Smith MPI_Comm comm, pcomm; 2043a0a83eb5SRémi Lacroix PetscInt clocal_size, nrows; 204482094794SBarry Smith const PetscInt *rows; 2045dbf0e21dSBarry Smith PetscMPIInt size; 2046a0a83eb5SRémi Lacroix IS crowp, lcolp; 204782094794SBarry Smith 204882094794SBarry Smith PetscFunctionBegin; 20499566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)A, &comm)); 205082094794SBarry Smith /* make a collective version of 'rowp' */ 20519566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)rowp, &pcomm)); 205282094794SBarry Smith if (pcomm == comm) { 205382094794SBarry Smith crowp = rowp; 205482094794SBarry Smith } else { 20559566063dSJacob Faibussowitsch PetscCall(ISGetSize(rowp, &nrows)); 20569566063dSJacob Faibussowitsch PetscCall(ISGetIndices(rowp, &rows)); 20579566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(comm, nrows, rows, PETSC_COPY_VALUES, &crowp)); 20589566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(rowp, &rows)); 205982094794SBarry Smith } 20609566063dSJacob Faibussowitsch PetscCall(ISSetPermutation(crowp)); 2061a0a83eb5SRémi Lacroix /* make a local version of 'colp' */ 20629566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)colp, &pcomm)); 20639566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(pcomm, &size)); 2064dbf0e21dSBarry Smith if (size == 1) { 206582094794SBarry Smith lcolp = colp; 206682094794SBarry Smith } else { 20679566063dSJacob Faibussowitsch PetscCall(ISAllGather(colp, &lcolp)); 206882094794SBarry Smith } 20699566063dSJacob Faibussowitsch PetscCall(ISSetPermutation(lcolp)); 207075f6568bSJed Brown /* now we just get the submatrix */ 20719566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(A, NULL, &clocal_size)); 2072fdfbdca6SPierre Jolivet PetscCall(MatCreateSubMatrix_MPIBAIJ_Private(A, crowp, lcolp, clocal_size, MAT_INITIAL_MATRIX, B, PETSC_FALSE)); 2073a0a83eb5SRémi Lacroix /* clean up */ 207448a46eb9SPierre Jolivet if (pcomm != comm) PetscCall(ISDestroy(&crowp)); 207548a46eb9SPierre Jolivet if (size > 1) PetscCall(ISDestroy(&lcolp)); 20763ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 207782094794SBarry Smith } 207882094794SBarry Smith 207966976f2fSJacob Faibussowitsch static PetscErrorCode MatGetGhosts_MPIBAIJ(Mat mat, PetscInt *nghosts, const PetscInt *ghosts[]) 2080d71ae5a4SJacob Faibussowitsch { 20818c7482ecSBarry Smith Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 20828c7482ecSBarry Smith Mat_SeqBAIJ *B = (Mat_SeqBAIJ *)baij->B->data; 20838c7482ecSBarry Smith 20848c7482ecSBarry Smith PetscFunctionBegin; 208526fbe8dcSKarl Rupp if (nghosts) *nghosts = B->nbs; 208626fbe8dcSKarl Rupp if (ghosts) *ghosts = baij->garray; 20873ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 20888c7482ecSBarry Smith } 20898c7482ecSBarry Smith 209066976f2fSJacob Faibussowitsch static PetscErrorCode MatGetSeqNonzeroStructure_MPIBAIJ(Mat A, Mat *newmat) 2091d71ae5a4SJacob Faibussowitsch { 2092f6d58c54SBarry Smith Mat B; 2093f6d58c54SBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 2094f6d58c54SBarry Smith Mat_SeqBAIJ *ad = (Mat_SeqBAIJ *)a->A->data, *bd = (Mat_SeqBAIJ *)a->B->data; 2095f6d58c54SBarry Smith Mat_SeqAIJ *b; 2096f4259b30SLisandro Dalcin PetscMPIInt size, rank, *recvcounts = NULL, *displs = NULL; 2097f6d58c54SBarry Smith PetscInt sendcount, i, *rstarts = A->rmap->range, n, cnt, j, bs = A->rmap->bs; 2098f6d58c54SBarry Smith PetscInt m, *garray = a->garray, *lens, *jsendbuf, *a_jsendbuf, *b_jsendbuf; 2099f6d58c54SBarry Smith 2100f6d58c54SBarry Smith PetscFunctionBegin; 21019566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)A), &size)); 21029566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)A), &rank)); 2103f6d58c54SBarry Smith 21042ef1f0ffSBarry Smith /* Tell every processor the number of nonzeros per row */ 21059566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(A->rmap->N / bs, &lens)); 2106ad540459SPierre Jolivet for (i = A->rmap->rstart / bs; i < A->rmap->rend / bs; i++) lens[i] = ad->i[i - A->rmap->rstart / bs + 1] - ad->i[i - A->rmap->rstart / bs] + bd->i[i - A->rmap->rstart / bs + 1] - bd->i[i - A->rmap->rstart / bs]; 21079566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(2 * size, &recvcounts)); 2108f6d58c54SBarry Smith displs = recvcounts + size; 2109f6d58c54SBarry Smith for (i = 0; i < size; i++) { 21106497c311SBarry Smith PetscCall(PetscMPIIntCast(A->rmap->range[i + 1] / bs - A->rmap->range[i] / bs, &recvcounts[i])); 21116497c311SBarry Smith PetscCall(PetscMPIIntCast(A->rmap->range[i] / bs, &displs[i])); 2112f6d58c54SBarry Smith } 21139566063dSJacob Faibussowitsch PetscCallMPI(MPI_Allgatherv(MPI_IN_PLACE, 0, MPI_DATATYPE_NULL, lens, recvcounts, displs, MPIU_INT, PetscObjectComm((PetscObject)A))); 21142ef1f0ffSBarry Smith /* Create the sequential matrix of the same type as the local block diagonal */ 21159566063dSJacob Faibussowitsch PetscCall(MatCreate(PETSC_COMM_SELF, &B)); 21169566063dSJacob Faibussowitsch PetscCall(MatSetSizes(B, A->rmap->N / bs, A->cmap->N / bs, PETSC_DETERMINE, PETSC_DETERMINE)); 21179566063dSJacob Faibussowitsch PetscCall(MatSetType(B, MATSEQAIJ)); 21189566063dSJacob Faibussowitsch PetscCall(MatSeqAIJSetPreallocation(B, 0, lens)); 2119f6d58c54SBarry Smith b = (Mat_SeqAIJ *)B->data; 2120f6d58c54SBarry Smith 21212ef1f0ffSBarry Smith /* Copy my part of matrix column indices over */ 2122f6d58c54SBarry Smith sendcount = ad->nz + bd->nz; 2123f6d58c54SBarry Smith jsendbuf = b->j + b->i[rstarts[rank] / bs]; 2124f6d58c54SBarry Smith a_jsendbuf = ad->j; 2125f6d58c54SBarry Smith b_jsendbuf = bd->j; 2126f6d58c54SBarry Smith n = A->rmap->rend / bs - A->rmap->rstart / bs; 2127f6d58c54SBarry Smith cnt = 0; 2128f6d58c54SBarry Smith for (i = 0; i < n; i++) { 2129f6d58c54SBarry Smith /* put in lower diagonal portion */ 2130f6d58c54SBarry Smith m = bd->i[i + 1] - bd->i[i]; 2131f6d58c54SBarry Smith while (m > 0) { 2132f6d58c54SBarry Smith /* is it above diagonal (in bd (compressed) numbering) */ 2133f6d58c54SBarry Smith if (garray[*b_jsendbuf] > A->rmap->rstart / bs + i) break; 2134f6d58c54SBarry Smith jsendbuf[cnt++] = garray[*b_jsendbuf++]; 2135f6d58c54SBarry Smith m--; 2136f6d58c54SBarry Smith } 2137f6d58c54SBarry Smith 2138f6d58c54SBarry Smith /* put in diagonal portion */ 2139ad540459SPierre Jolivet for (j = ad->i[i]; j < ad->i[i + 1]; j++) jsendbuf[cnt++] = A->rmap->rstart / bs + *a_jsendbuf++; 2140f6d58c54SBarry Smith 2141f6d58c54SBarry Smith /* put in upper diagonal portion */ 2142ad540459SPierre Jolivet while (m-- > 0) jsendbuf[cnt++] = garray[*b_jsendbuf++]; 2143f6d58c54SBarry Smith } 21445f80ce2aSJacob Faibussowitsch PetscCheck(cnt == sendcount, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Corrupted PETSc matrix: nz given %" PetscInt_FMT " actual nz %" PetscInt_FMT, sendcount, cnt); 2145f6d58c54SBarry Smith 21462ef1f0ffSBarry Smith /* Gather all column indices to all processors */ 2147f6d58c54SBarry Smith for (i = 0; i < size; i++) { 2148f6d58c54SBarry Smith recvcounts[i] = 0; 2149ad540459SPierre Jolivet for (j = A->rmap->range[i] / bs; j < A->rmap->range[i + 1] / bs; j++) recvcounts[i] += lens[j]; 2150f6d58c54SBarry Smith } 2151f6d58c54SBarry Smith displs[0] = 0; 2152ad540459SPierre Jolivet for (i = 1; i < size; i++) displs[i] = displs[i - 1] + recvcounts[i - 1]; 21539566063dSJacob Faibussowitsch PetscCallMPI(MPI_Allgatherv(MPI_IN_PLACE, 0, MPI_DATATYPE_NULL, b->j, recvcounts, displs, MPIU_INT, PetscObjectComm((PetscObject)A))); 21545804573cSPierre Jolivet /* Assemble the matrix into usable form (note numerical values not yet set) */ 2155f6d58c54SBarry Smith /* set the b->ilen (length of each row) values */ 21569566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(b->ilen, lens, A->rmap->N / bs)); 2157f6d58c54SBarry Smith /* set the b->i indices */ 2158f6d58c54SBarry Smith b->i[0] = 0; 2159ad540459SPierre Jolivet for (i = 1; i <= A->rmap->N / bs; i++) b->i[i] = b->i[i - 1] + lens[i - 1]; 21609566063dSJacob Faibussowitsch PetscCall(PetscFree(lens)); 21619566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY)); 21629566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY)); 21639566063dSJacob Faibussowitsch PetscCall(PetscFree(recvcounts)); 2164f6d58c54SBarry Smith 2165b94d7dedSBarry Smith PetscCall(MatPropagateSymmetryOptions(A, B)); 2166f6d58c54SBarry Smith *newmat = B; 21673ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2168f6d58c54SBarry Smith } 2169f6d58c54SBarry Smith 217066976f2fSJacob Faibussowitsch static PetscErrorCode MatSOR_MPIBAIJ(Mat matin, Vec bb, PetscReal omega, MatSORType flag, PetscReal fshift, PetscInt its, PetscInt lits, Vec xx) 2171d71ae5a4SJacob Faibussowitsch { 2172b1a666ecSBarry Smith Mat_MPIBAIJ *mat = (Mat_MPIBAIJ *)matin->data; 2173f4259b30SLisandro Dalcin Vec bb1 = NULL; 2174b1a666ecSBarry Smith 2175b1a666ecSBarry Smith PetscFunctionBegin; 2176b1a666ecSBarry Smith if (flag == SOR_APPLY_UPPER) { 21779566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx)); 21783ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2179b1a666ecSBarry Smith } 2180b1a666ecSBarry Smith 218148a46eb9SPierre Jolivet if (its > 1 || ~flag & SOR_ZERO_INITIAL_GUESS) PetscCall(VecDuplicate(bb, &bb1)); 21824e980039SJed Brown 2183b1a666ecSBarry Smith if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP) { 2184b1a666ecSBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 21859566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx)); 2186b1a666ecSBarry Smith its--; 2187b1a666ecSBarry Smith } 2188b1a666ecSBarry Smith 2189b1a666ecSBarry Smith while (its--) { 21909566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 21919566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 2192b1a666ecSBarry Smith 2193b1a666ecSBarry Smith /* update rhs: bb1 = bb - B*x */ 21949566063dSJacob Faibussowitsch PetscCall(VecScale(mat->lvec, -1.0)); 21959566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->multadd)(mat->B, mat->lvec, bb, bb1)); 2196b1a666ecSBarry Smith 2197b1a666ecSBarry Smith /* local sweep */ 21989566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, SOR_SYMMETRIC_SWEEP, fshift, lits, 1, xx)); 2199b1a666ecSBarry Smith } 2200b1a666ecSBarry Smith } else if (flag & SOR_LOCAL_FORWARD_SWEEP) { 2201b1a666ecSBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 22029566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx)); 2203b1a666ecSBarry Smith its--; 2204b1a666ecSBarry Smith } 2205b1a666ecSBarry Smith while (its--) { 22069566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 22079566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 2208b1a666ecSBarry Smith 2209b1a666ecSBarry Smith /* update rhs: bb1 = bb - B*x */ 22109566063dSJacob Faibussowitsch PetscCall(VecScale(mat->lvec, -1.0)); 22119566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->multadd)(mat->B, mat->lvec, bb, bb1)); 2212b1a666ecSBarry Smith 2213b1a666ecSBarry Smith /* local sweep */ 22149566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, SOR_FORWARD_SWEEP, fshift, lits, 1, xx)); 2215b1a666ecSBarry Smith } 2216b1a666ecSBarry Smith } else if (flag & SOR_LOCAL_BACKWARD_SWEEP) { 2217b1a666ecSBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 22189566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx)); 2219b1a666ecSBarry Smith its--; 2220b1a666ecSBarry Smith } 2221b1a666ecSBarry Smith while (its--) { 22229566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 22239566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 2224b1a666ecSBarry Smith 2225b1a666ecSBarry Smith /* update rhs: bb1 = bb - B*x */ 22269566063dSJacob Faibussowitsch PetscCall(VecScale(mat->lvec, -1.0)); 22279566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->multadd)(mat->B, mat->lvec, bb, bb1)); 2228b1a666ecSBarry Smith 2229b1a666ecSBarry Smith /* local sweep */ 22309566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, SOR_BACKWARD_SWEEP, fshift, lits, 1, xx)); 2231b1a666ecSBarry Smith } 2232ce94432eSBarry Smith } else SETERRQ(PetscObjectComm((PetscObject)matin), PETSC_ERR_SUP, "Parallel version of SOR requested not supported"); 2233b1a666ecSBarry Smith 22349566063dSJacob Faibussowitsch PetscCall(VecDestroy(&bb1)); 22353ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2236b1a666ecSBarry Smith } 2237b1a666ecSBarry Smith 223866976f2fSJacob Faibussowitsch static PetscErrorCode MatGetColumnReductions_MPIBAIJ(Mat A, PetscInt type, PetscReal *reductions) 2239d71ae5a4SJacob Faibussowitsch { 224047f7623dSRémi Lacroix Mat_MPIBAIJ *aij = (Mat_MPIBAIJ *)A->data; 2241a873a8cdSSam Reynolds PetscInt m, N, i, *garray = aij->garray; 224247f7623dSRémi Lacroix PetscInt ib, jb, bs = A->rmap->bs; 224347f7623dSRémi Lacroix Mat_SeqBAIJ *a_aij = (Mat_SeqBAIJ *)aij->A->data; 224447f7623dSRémi Lacroix MatScalar *a_val = a_aij->a; 224547f7623dSRémi Lacroix Mat_SeqBAIJ *b_aij = (Mat_SeqBAIJ *)aij->B->data; 224647f7623dSRémi Lacroix MatScalar *b_val = b_aij->a; 224747f7623dSRémi Lacroix PetscReal *work; 224847f7623dSRémi Lacroix 224947f7623dSRémi Lacroix PetscFunctionBegin; 22509566063dSJacob Faibussowitsch PetscCall(MatGetSize(A, &m, &N)); 22519566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(N, &work)); 2252857cbf51SRichard Tran Mills if (type == NORM_2) { 225347f7623dSRémi Lacroix for (i = a_aij->i[0]; i < a_aij->i[aij->A->rmap->n / bs]; i++) { 225447f7623dSRémi Lacroix for (jb = 0; jb < bs; jb++) { 225547f7623dSRémi Lacroix for (ib = 0; ib < bs; ib++) { 225647f7623dSRémi Lacroix work[A->cmap->rstart + a_aij->j[i] * bs + jb] += PetscAbsScalar(*a_val * *a_val); 225747f7623dSRémi Lacroix a_val++; 225847f7623dSRémi Lacroix } 225947f7623dSRémi Lacroix } 226047f7623dSRémi Lacroix } 226147f7623dSRémi Lacroix for (i = b_aij->i[0]; i < b_aij->i[aij->B->rmap->n / bs]; i++) { 226247f7623dSRémi Lacroix for (jb = 0; jb < bs; jb++) { 226347f7623dSRémi Lacroix for (ib = 0; ib < bs; ib++) { 226447f7623dSRémi Lacroix work[garray[b_aij->j[i]] * bs + jb] += PetscAbsScalar(*b_val * *b_val); 226547f7623dSRémi Lacroix b_val++; 226647f7623dSRémi Lacroix } 226747f7623dSRémi Lacroix } 226847f7623dSRémi Lacroix } 2269857cbf51SRichard Tran Mills } else if (type == NORM_1) { 227047f7623dSRémi Lacroix for (i = a_aij->i[0]; i < a_aij->i[aij->A->rmap->n / bs]; i++) { 227147f7623dSRémi Lacroix for (jb = 0; jb < bs; jb++) { 227247f7623dSRémi Lacroix for (ib = 0; ib < bs; ib++) { 227347f7623dSRémi Lacroix work[A->cmap->rstart + a_aij->j[i] * bs + jb] += PetscAbsScalar(*a_val); 227447f7623dSRémi Lacroix a_val++; 227547f7623dSRémi Lacroix } 227647f7623dSRémi Lacroix } 227747f7623dSRémi Lacroix } 227847f7623dSRémi Lacroix for (i = b_aij->i[0]; i < b_aij->i[aij->B->rmap->n / bs]; i++) { 227947f7623dSRémi Lacroix for (jb = 0; jb < bs; jb++) { 228047f7623dSRémi Lacroix for (ib = 0; ib < bs; ib++) { 228147f7623dSRémi Lacroix work[garray[b_aij->j[i]] * bs + jb] += PetscAbsScalar(*b_val); 228247f7623dSRémi Lacroix b_val++; 228347f7623dSRémi Lacroix } 228447f7623dSRémi Lacroix } 228547f7623dSRémi Lacroix } 2286857cbf51SRichard Tran Mills } else if (type == NORM_INFINITY) { 228747f7623dSRémi Lacroix for (i = a_aij->i[0]; i < a_aij->i[aij->A->rmap->n / bs]; i++) { 228847f7623dSRémi Lacroix for (jb = 0; jb < bs; jb++) { 228947f7623dSRémi Lacroix for (ib = 0; ib < bs; ib++) { 22906497c311SBarry Smith PetscInt col = A->cmap->rstart + a_aij->j[i] * bs + jb; 229147f7623dSRémi Lacroix work[col] = PetscMax(PetscAbsScalar(*a_val), work[col]); 229247f7623dSRémi Lacroix a_val++; 229347f7623dSRémi Lacroix } 229447f7623dSRémi Lacroix } 229547f7623dSRémi Lacroix } 229647f7623dSRémi Lacroix for (i = b_aij->i[0]; i < b_aij->i[aij->B->rmap->n / bs]; i++) { 229747f7623dSRémi Lacroix for (jb = 0; jb < bs; jb++) { 229847f7623dSRémi Lacroix for (ib = 0; ib < bs; ib++) { 22996497c311SBarry Smith PetscInt col = garray[b_aij->j[i]] * bs + jb; 230047f7623dSRémi Lacroix work[col] = PetscMax(PetscAbsScalar(*b_val), work[col]); 230147f7623dSRémi Lacroix b_val++; 230247f7623dSRémi Lacroix } 230347f7623dSRémi Lacroix } 230447f7623dSRémi Lacroix } 2305857cbf51SRichard Tran Mills } else if (type == REDUCTION_SUM_REALPART || type == REDUCTION_MEAN_REALPART) { 2306a873a8cdSSam Reynolds for (i = a_aij->i[0]; i < a_aij->i[aij->A->rmap->n / bs]; i++) { 2307a873a8cdSSam Reynolds for (jb = 0; jb < bs; jb++) { 2308a873a8cdSSam Reynolds for (ib = 0; ib < bs; ib++) { 2309857cbf51SRichard Tran Mills work[A->cmap->rstart + a_aij->j[i] * bs + jb] += PetscRealPart(*a_val); 2310a873a8cdSSam Reynolds a_val++; 2311a873a8cdSSam Reynolds } 2312a873a8cdSSam Reynolds } 2313a873a8cdSSam Reynolds } 2314a873a8cdSSam Reynolds for (i = b_aij->i[0]; i < b_aij->i[aij->B->rmap->n / bs]; i++) { 2315a873a8cdSSam Reynolds for (jb = 0; jb < bs; jb++) { 2316a873a8cdSSam Reynolds for (ib = 0; ib < bs; ib++) { 2317857cbf51SRichard Tran Mills work[garray[b_aij->j[i]] * bs + jb] += PetscRealPart(*b_val); 2318a873a8cdSSam Reynolds b_val++; 2319a873a8cdSSam Reynolds } 2320a873a8cdSSam Reynolds } 2321a873a8cdSSam Reynolds } 2322857cbf51SRichard Tran Mills } else if (type == REDUCTION_SUM_IMAGINARYPART || type == REDUCTION_MEAN_IMAGINARYPART) { 2323857cbf51SRichard Tran Mills for (i = a_aij->i[0]; i < a_aij->i[aij->A->rmap->n / bs]; i++) { 2324857cbf51SRichard Tran Mills for (jb = 0; jb < bs; jb++) { 2325857cbf51SRichard Tran Mills for (ib = 0; ib < bs; ib++) { 2326857cbf51SRichard Tran Mills work[A->cmap->rstart + a_aij->j[i] * bs + jb] += PetscImaginaryPart(*a_val); 2327857cbf51SRichard Tran Mills a_val++; 2328857cbf51SRichard Tran Mills } 2329857cbf51SRichard Tran Mills } 2330857cbf51SRichard Tran Mills } 2331857cbf51SRichard Tran Mills for (i = b_aij->i[0]; i < b_aij->i[aij->B->rmap->n / bs]; i++) { 2332857cbf51SRichard Tran Mills for (jb = 0; jb < bs; jb++) { 2333857cbf51SRichard Tran Mills for (ib = 0; ib < bs; ib++) { 2334857cbf51SRichard Tran Mills work[garray[b_aij->j[i]] * bs + jb] += PetscImaginaryPart(*b_val); 2335857cbf51SRichard Tran Mills b_val++; 2336857cbf51SRichard Tran Mills } 2337857cbf51SRichard Tran Mills } 2338857cbf51SRichard Tran Mills } 2339857cbf51SRichard Tran Mills } else SETERRQ(PetscObjectComm((PetscObject)A), PETSC_ERR_ARG_WRONG, "Unknown reduction type"); 2340857cbf51SRichard Tran Mills if (type == NORM_INFINITY) { 2341e91c04dfSPierre Jolivet PetscCallMPI(MPIU_Allreduce(work, reductions, N, MPIU_REAL, MPIU_MAX, PetscObjectComm((PetscObject)A))); 234247f7623dSRémi Lacroix } else { 2343e91c04dfSPierre Jolivet PetscCallMPI(MPIU_Allreduce(work, reductions, N, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)A))); 234447f7623dSRémi Lacroix } 23459566063dSJacob Faibussowitsch PetscCall(PetscFree(work)); 2346857cbf51SRichard Tran Mills if (type == NORM_2) { 2347a873a8cdSSam Reynolds for (i = 0; i < N; i++) reductions[i] = PetscSqrtReal(reductions[i]); 2348857cbf51SRichard Tran Mills } else if (type == REDUCTION_MEAN_REALPART || type == REDUCTION_MEAN_IMAGINARYPART) { 2349a873a8cdSSam Reynolds for (i = 0; i < N; i++) reductions[i] /= m; 235047f7623dSRémi Lacroix } 23513ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 235247f7623dSRémi Lacroix } 235347f7623dSRémi Lacroix 235466976f2fSJacob Faibussowitsch static PetscErrorCode MatInvertBlockDiagonal_MPIBAIJ(Mat A, const PetscScalar **values) 2355d71ae5a4SJacob Faibussowitsch { 2356bbead8a2SBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 2357bbead8a2SBarry Smith 2358bbead8a2SBarry Smith PetscFunctionBegin; 23599566063dSJacob Faibussowitsch PetscCall(MatInvertBlockDiagonal(a->A, values)); 23607b6c816cSBarry Smith A->factorerrortype = a->A->factorerrortype; 23617b6c816cSBarry Smith A->factorerror_zeropivot_value = a->A->factorerror_zeropivot_value; 23627b6c816cSBarry Smith A->factorerror_zeropivot_row = a->A->factorerror_zeropivot_row; 23633ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2364bbead8a2SBarry Smith } 2365bbead8a2SBarry Smith 236666976f2fSJacob Faibussowitsch static PetscErrorCode MatShift_MPIBAIJ(Mat Y, PetscScalar a) 2367d71ae5a4SJacob Faibussowitsch { 23687d68702bSBarry Smith Mat_MPIBAIJ *maij = (Mat_MPIBAIJ *)Y->data; 23696f33a894SBarry Smith Mat_SeqBAIJ *aij = (Mat_SeqBAIJ *)maij->A->data; 23707d68702bSBarry Smith 23717d68702bSBarry Smith PetscFunctionBegin; 23726f33a894SBarry Smith if (!Y->preallocated) { 23739566063dSJacob Faibussowitsch PetscCall(MatMPIBAIJSetPreallocation(Y, Y->rmap->bs, 1, NULL, 0, NULL)); 23746f33a894SBarry Smith } else if (!aij->nz) { 2375b83222d8SBarry Smith PetscInt nonew = aij->nonew; 23769566063dSJacob Faibussowitsch PetscCall(MatSeqBAIJSetPreallocation(maij->A, Y->rmap->bs, 1, NULL)); 2377b83222d8SBarry Smith aij->nonew = nonew; 23787d68702bSBarry Smith } 23799566063dSJacob Faibussowitsch PetscCall(MatShift_Basic(Y, a)); 23803ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 23817d68702bSBarry Smith } 23828c7482ecSBarry Smith 238366976f2fSJacob Faibussowitsch static PetscErrorCode MatMissingDiagonal_MPIBAIJ(Mat A, PetscBool *missing, PetscInt *d) 2384d71ae5a4SJacob Faibussowitsch { 23853b49f96aSBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 23863b49f96aSBarry Smith 23873b49f96aSBarry Smith PetscFunctionBegin; 23885f80ce2aSJacob Faibussowitsch PetscCheck(A->rmap->n == A->cmap->n, PETSC_COMM_SELF, PETSC_ERR_SUP, "Only works for square matrices"); 23899566063dSJacob Faibussowitsch PetscCall(MatMissingDiagonal(a->A, missing, d)); 23903b49f96aSBarry Smith if (d) { 23913b49f96aSBarry Smith PetscInt rstart; 23929566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(A, &rstart, NULL)); 23933b49f96aSBarry Smith *d += rstart / A->rmap->bs; 23943b49f96aSBarry Smith } 23953ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 23963b49f96aSBarry Smith } 23973b49f96aSBarry Smith 239866976f2fSJacob Faibussowitsch static PetscErrorCode MatGetDiagonalBlock_MPIBAIJ(Mat A, Mat *a) 2399d71ae5a4SJacob Faibussowitsch { 2400a5b7ff6bSBarry Smith PetscFunctionBegin; 2401a5b7ff6bSBarry Smith *a = ((Mat_MPIBAIJ *)A->data)->A; 24023ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2403a5b7ff6bSBarry Smith } 2404a5b7ff6bSBarry Smith 240517ea310bSPierre Jolivet static PetscErrorCode MatEliminateZeros_MPIBAIJ(Mat A, PetscBool keep) 240617ea310bSPierre Jolivet { 240717ea310bSPierre Jolivet Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 240817ea310bSPierre Jolivet 240917ea310bSPierre Jolivet PetscFunctionBegin; 241017ea310bSPierre Jolivet PetscCall(MatEliminateZeros_SeqBAIJ(a->A, keep)); // possibly keep zero diagonal coefficients 241117ea310bSPierre Jolivet PetscCall(MatEliminateZeros_SeqBAIJ(a->B, PETSC_FALSE)); // never keep zero diagonal coefficients 241217ea310bSPierre Jolivet PetscFunctionReturn(PETSC_SUCCESS); 241317ea310bSPierre Jolivet } 241417ea310bSPierre Jolivet 24153964eb88SJed Brown static struct _MatOps MatOps_Values = {MatSetValues_MPIBAIJ, 2416cc2dc46cSBarry Smith MatGetRow_MPIBAIJ, 2417cc2dc46cSBarry Smith MatRestoreRow_MPIBAIJ, 2418cc2dc46cSBarry Smith MatMult_MPIBAIJ, 241997304618SKris Buschelman /* 4*/ MatMultAdd_MPIBAIJ, 24207c922b88SBarry Smith MatMultTranspose_MPIBAIJ, 24217c922b88SBarry Smith MatMultTransposeAdd_MPIBAIJ, 2422f4259b30SLisandro Dalcin NULL, 2423f4259b30SLisandro Dalcin NULL, 2424f4259b30SLisandro Dalcin NULL, 2425f4259b30SLisandro Dalcin /*10*/ NULL, 2426f4259b30SLisandro Dalcin NULL, 2427f4259b30SLisandro Dalcin NULL, 2428b1a666ecSBarry Smith MatSOR_MPIBAIJ, 2429cc2dc46cSBarry Smith MatTranspose_MPIBAIJ, 243097304618SKris Buschelman /*15*/ MatGetInfo_MPIBAIJ, 24317fc3c18eSBarry Smith MatEqual_MPIBAIJ, 2432cc2dc46cSBarry Smith MatGetDiagonal_MPIBAIJ, 2433cc2dc46cSBarry Smith MatDiagonalScale_MPIBAIJ, 2434cc2dc46cSBarry Smith MatNorm_MPIBAIJ, 243597304618SKris Buschelman /*20*/ MatAssemblyBegin_MPIBAIJ, 2436cc2dc46cSBarry Smith MatAssemblyEnd_MPIBAIJ, 2437cc2dc46cSBarry Smith MatSetOption_MPIBAIJ, 2438cc2dc46cSBarry Smith MatZeroEntries_MPIBAIJ, 2439d519adbfSMatthew Knepley /*24*/ MatZeroRows_MPIBAIJ, 2440f4259b30SLisandro Dalcin NULL, 2441f4259b30SLisandro Dalcin NULL, 2442f4259b30SLisandro Dalcin NULL, 2443f4259b30SLisandro Dalcin NULL, 244426cec326SBarry Smith /*29*/ MatSetUp_MPI_Hash, 2445f4259b30SLisandro Dalcin NULL, 2446f4259b30SLisandro Dalcin NULL, 2447a5b7ff6bSBarry Smith MatGetDiagonalBlock_MPIBAIJ, 2448f4259b30SLisandro Dalcin NULL, 2449d519adbfSMatthew Knepley /*34*/ MatDuplicate_MPIBAIJ, 2450f4259b30SLisandro Dalcin NULL, 2451f4259b30SLisandro Dalcin NULL, 2452f4259b30SLisandro Dalcin NULL, 2453f4259b30SLisandro Dalcin NULL, 2454d519adbfSMatthew Knepley /*39*/ MatAXPY_MPIBAIJ, 24557dae84e0SHong Zhang MatCreateSubMatrices_MPIBAIJ, 2456cc2dc46cSBarry Smith MatIncreaseOverlap_MPIBAIJ, 2457cc2dc46cSBarry Smith MatGetValues_MPIBAIJ, 24583c896bc6SHong Zhang MatCopy_MPIBAIJ, 2459f4259b30SLisandro Dalcin /*44*/ NULL, 2460cc2dc46cSBarry Smith MatScale_MPIBAIJ, 24617d68702bSBarry Smith MatShift_MPIBAIJ, 2462f4259b30SLisandro Dalcin NULL, 24636f0a72daSMatthew G. Knepley MatZeroRowsColumns_MPIBAIJ, 2464f4259b30SLisandro Dalcin /*49*/ NULL, 2465f4259b30SLisandro Dalcin NULL, 2466f4259b30SLisandro Dalcin NULL, 2467f4259b30SLisandro Dalcin NULL, 2468f4259b30SLisandro Dalcin NULL, 246993dfae19SHong Zhang /*54*/ MatFDColoringCreate_MPIXAIJ, 2470f4259b30SLisandro Dalcin NULL, 2471cc2dc46cSBarry Smith MatSetUnfactored_MPIBAIJ, 247282094794SBarry Smith MatPermute_MPIBAIJ, 2473cc2dc46cSBarry Smith MatSetValuesBlocked_MPIBAIJ, 24747dae84e0SHong Zhang /*59*/ MatCreateSubMatrix_MPIBAIJ, 2475f14a1c24SBarry Smith MatDestroy_MPIBAIJ, 2476f14a1c24SBarry Smith MatView_MPIBAIJ, 2477f4259b30SLisandro Dalcin NULL, 2478f4259b30SLisandro Dalcin NULL, 2479f4259b30SLisandro Dalcin /*64*/ NULL, 2480f4259b30SLisandro Dalcin NULL, 2481f4259b30SLisandro Dalcin NULL, 2482f4259b30SLisandro Dalcin NULL, 24838bb0f5c6SPierre Jolivet MatGetRowMaxAbs_MPIBAIJ, 24848bb0f5c6SPierre Jolivet /*69*/ NULL, 2485f4259b30SLisandro Dalcin NULL, 2486f4259b30SLisandro Dalcin NULL, 2487f6d58c54SBarry Smith MatFDColoringApply_BAIJ, 2488f4259b30SLisandro Dalcin NULL, 24898bb0f5c6SPierre Jolivet /*74*/ NULL, 2490f4259b30SLisandro Dalcin NULL, 2491f4259b30SLisandro Dalcin NULL, 2492f4259b30SLisandro Dalcin NULL, 24935bba2384SShri Abhyankar MatLoad_MPIBAIJ, 24948bb0f5c6SPierre Jolivet /*79*/ NULL, 24958bb0f5c6SPierre Jolivet NULL, 24968bb0f5c6SPierre Jolivet NULL, 24978bb0f5c6SPierre Jolivet NULL, 24988bb0f5c6SPierre Jolivet NULL, 2499f4259b30SLisandro Dalcin /*84*/ NULL, 2500f4259b30SLisandro Dalcin NULL, 2501f4259b30SLisandro Dalcin NULL, 2502f4259b30SLisandro Dalcin NULL, 2503f4259b30SLisandro Dalcin NULL, 2504f4259b30SLisandro Dalcin /*89*/ NULL, 2505f4259b30SLisandro Dalcin NULL, 2506f4259b30SLisandro Dalcin NULL, 2507f4259b30SLisandro Dalcin NULL, 25088bb0f5c6SPierre Jolivet MatConjugate_MPIBAIJ, 2509f4259b30SLisandro Dalcin /*94*/ NULL, 2510f4259b30SLisandro Dalcin NULL, 25118bb0f5c6SPierre Jolivet MatRealPart_MPIBAIJ, 25128bb0f5c6SPierre Jolivet MatImaginaryPart_MPIBAIJ, 2513f4259b30SLisandro Dalcin NULL, 2514f4259b30SLisandro Dalcin /*99*/ NULL, 2515f4259b30SLisandro Dalcin NULL, 2516f4259b30SLisandro Dalcin NULL, 2517f4259b30SLisandro Dalcin NULL, 2518f4259b30SLisandro Dalcin NULL, 25198bb0f5c6SPierre Jolivet /*104*/ MatMissingDiagonal_MPIBAIJ, 25208bb0f5c6SPierre Jolivet MatGetSeqNonzeroStructure_MPIBAIJ, 25218bb0f5c6SPierre Jolivet NULL, 25228bb0f5c6SPierre Jolivet MatGetGhosts_MPIBAIJ, 2523f4259b30SLisandro Dalcin NULL, 2524f4259b30SLisandro Dalcin /*109*/ NULL, 2525f4259b30SLisandro Dalcin NULL, 2526f4259b30SLisandro Dalcin NULL, 2527f4259b30SLisandro Dalcin NULL, 2528f4259b30SLisandro Dalcin NULL, 25298bb0f5c6SPierre Jolivet /*114*/ MatGetMultiProcBlock_MPIBAIJ, 2530f4259b30SLisandro Dalcin NULL, 25318bb0f5c6SPierre Jolivet MatGetColumnReductions_MPIBAIJ, 25328bb0f5c6SPierre Jolivet MatInvertBlockDiagonal_MPIBAIJ, 2533f4259b30SLisandro Dalcin NULL, 2534f4259b30SLisandro Dalcin /*119*/ NULL, 2535f4259b30SLisandro Dalcin NULL, 2536f4259b30SLisandro Dalcin NULL, 2537f4259b30SLisandro Dalcin NULL, 25388bb0f5c6SPierre Jolivet NULL, 2539f4259b30SLisandro Dalcin /*124*/ NULL, 2540f4259b30SLisandro Dalcin NULL, 2541f4259b30SLisandro Dalcin NULL, 25428bb0f5c6SPierre Jolivet MatSetBlockSizes_Default, 2543f4259b30SLisandro Dalcin NULL, 25448bb0f5c6SPierre Jolivet /*129*/ MatFDColoringSetUp_MPIXAIJ, 2545f4259b30SLisandro Dalcin NULL, 25468bb0f5c6SPierre Jolivet MatCreateMPIMatConcatenateSeqMat_MPIBAIJ, 2547f4259b30SLisandro Dalcin NULL, 2548f4259b30SLisandro Dalcin NULL, 2549f4259b30SLisandro Dalcin /*134*/ NULL, 2550f4259b30SLisandro Dalcin NULL, 2551f4259b30SLisandro Dalcin NULL, 2552eede4a3fSMark Adams MatEliminateZeros_MPIBAIJ, 25534cc2b5b5SPierre Jolivet MatGetRowSumAbs_MPIBAIJ, 25548bb0f5c6SPierre Jolivet /*139*/ NULL, 255542ce410bSJunchao Zhang NULL, 255642ce410bSJunchao Zhang NULL, 255703db1824SAlex Lindsay MatCopyHashToXAIJ_MPI_Hash, 2558c2be7ffeSStefano Zampini NULL, 255903db1824SAlex Lindsay NULL}; 256079bdfe76SSatish Balay 2561cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIBAIJ_MPISBAIJ(Mat, MatType, MatReuse, Mat *); 2562c9225affSStefano Zampini PETSC_INTERN PetscErrorCode MatConvert_XAIJ_IS(Mat, MatType, MatReuse, Mat *); 2563d94109b8SHong Zhang 256466976f2fSJacob Faibussowitsch static PetscErrorCode MatMPIBAIJSetPreallocationCSR_MPIBAIJ(Mat B, PetscInt bs, const PetscInt ii[], const PetscInt jj[], const PetscScalar V[]) 2565d71ae5a4SJacob Faibussowitsch { 2566b8d659d7SLisandro Dalcin PetscInt m, rstart, cstart, cend; 2567f4259b30SLisandro Dalcin PetscInt i, j, dlen, olen, nz, nz_max = 0, *d_nnz = NULL, *o_nnz = NULL; 2568f4259b30SLisandro Dalcin const PetscInt *JJ = NULL; 2569f4259b30SLisandro Dalcin PetscScalar *values = NULL; 2570d47bf9aaSJed Brown PetscBool roworiented = ((Mat_MPIBAIJ *)B->data)->roworiented; 25713bd0feecSPierre Jolivet PetscBool nooffprocentries; 2572aac34f13SBarry Smith 2573aac34f13SBarry Smith PetscFunctionBegin; 25749566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetBlockSize(B->rmap, bs)); 25759566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetBlockSize(B->cmap, bs)); 25769566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->rmap)); 25779566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->cmap)); 25789566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetBlockSize(B->rmap, &bs)); 2579d0f46423SBarry Smith m = B->rmap->n / bs; 2580d0f46423SBarry Smith rstart = B->rmap->rstart / bs; 2581d0f46423SBarry Smith cstart = B->cmap->rstart / bs; 2582d0f46423SBarry Smith cend = B->cmap->rend / bs; 2583b8d659d7SLisandro Dalcin 25845f80ce2aSJacob Faibussowitsch PetscCheck(!ii[0], PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "ii[0] must be 0 but it is %" PetscInt_FMT, ii[0]); 25859566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(m, &d_nnz, m, &o_nnz)); 2586aac34f13SBarry Smith for (i = 0; i < m; i++) { 2587cf12db73SBarry Smith nz = ii[i + 1] - ii[i]; 25885f80ce2aSJacob Faibussowitsch PetscCheck(nz >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Local row %" PetscInt_FMT " has a negative number of columns %" PetscInt_FMT, i, nz); 2589b8d659d7SLisandro Dalcin nz_max = PetscMax(nz_max, nz); 259037cd3c0dSBarry Smith dlen = 0; 259137cd3c0dSBarry Smith olen = 0; 2592cf12db73SBarry Smith JJ = jj + ii[i]; 2593b8d659d7SLisandro Dalcin for (j = 0; j < nz; j++) { 259437cd3c0dSBarry Smith if (*JJ < cstart || *JJ >= cend) olen++; 259537cd3c0dSBarry Smith else dlen++; 2596aac34f13SBarry Smith JJ++; 2597aac34f13SBarry Smith } 259837cd3c0dSBarry Smith d_nnz[i] = dlen; 259937cd3c0dSBarry Smith o_nnz[i] = olen; 2600aac34f13SBarry Smith } 26019566063dSJacob Faibussowitsch PetscCall(MatMPIBAIJSetPreallocation(B, bs, 0, d_nnz, 0, o_nnz)); 26029566063dSJacob Faibussowitsch PetscCall(PetscFree2(d_nnz, o_nnz)); 2603aac34f13SBarry Smith 2604b8d659d7SLisandro Dalcin values = (PetscScalar *)V; 260548a46eb9SPierre Jolivet if (!values) PetscCall(PetscCalloc1(bs * bs * nz_max, &values)); 2606b8d659d7SLisandro Dalcin for (i = 0; i < m; i++) { 2607b8d659d7SLisandro Dalcin PetscInt row = i + rstart; 2608cf12db73SBarry Smith PetscInt ncols = ii[i + 1] - ii[i]; 2609cf12db73SBarry Smith const PetscInt *icols = jj + ii[i]; 2610bb80cfbbSStefano Zampini if (bs == 1 || !roworiented) { /* block ordering matches the non-nested layout of MatSetValues so we can insert entire rows */ 2611cf12db73SBarry Smith const PetscScalar *svals = values + (V ? (bs * bs * ii[i]) : 0); 26129566063dSJacob Faibussowitsch PetscCall(MatSetValuesBlocked_MPIBAIJ(B, 1, &row, ncols, icols, svals, INSERT_VALUES)); 26133adadaf3SJed Brown } else { /* block ordering does not match so we can only insert one block at a time. */ 26143adadaf3SJed Brown PetscInt j; 26153adadaf3SJed Brown for (j = 0; j < ncols; j++) { 26163adadaf3SJed Brown const PetscScalar *svals = values + (V ? (bs * bs * (ii[i] + j)) : 0); 26179566063dSJacob Faibussowitsch PetscCall(MatSetValuesBlocked_MPIBAIJ(B, 1, &row, 1, &icols[j], svals, INSERT_VALUES)); 26183adadaf3SJed Brown } 26193adadaf3SJed Brown } 2620aac34f13SBarry Smith } 2621aac34f13SBarry Smith 26229566063dSJacob Faibussowitsch if (!V) PetscCall(PetscFree(values)); 26233bd0feecSPierre Jolivet nooffprocentries = B->nooffprocentries; 26243bd0feecSPierre Jolivet B->nooffprocentries = PETSC_TRUE; 26259566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY)); 26269566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY)); 26273bd0feecSPierre Jolivet B->nooffprocentries = nooffprocentries; 26283bd0feecSPierre Jolivet 26299566063dSJacob Faibussowitsch PetscCall(MatSetOption(B, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE)); 26303ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2631aac34f13SBarry Smith } 2632aac34f13SBarry Smith 2633aac34f13SBarry Smith /*@C 263411a5261eSBarry Smith MatMPIBAIJSetPreallocationCSR - Creates a sparse parallel matrix in `MATBAIJ` format using the given nonzero structure and (optional) numerical values 2635aac34f13SBarry Smith 2636d083f849SBarry Smith Collective 2637aac34f13SBarry Smith 2638aac34f13SBarry Smith Input Parameters: 26391c4f3114SJed Brown + B - the matrix 2640dfb205c3SBarry Smith . bs - the block size 264120f4b53cSBarry Smith . i - the indices into `j` for the start of each local row (starts with zero) 2642aac34f13SBarry Smith . j - the column indices for each local row (starts with zero) these must be sorted for each row 2643d8a51d2aSBarry Smith - v - optional values in the matrix, use `NULL` if not provided 2644aac34f13SBarry Smith 2645664954b6SBarry Smith Level: advanced 2646aac34f13SBarry Smith 264795452b02SPatrick Sanan Notes: 2648d8a51d2aSBarry Smith The `i`, `j`, and `v` arrays ARE copied by this routine into the internal format used by PETSc; 2649d8a51d2aSBarry Smith thus you CANNOT change the matrix entries by changing the values of `v` after you have 2650d8a51d2aSBarry Smith called this routine. 2651d8a51d2aSBarry Smith 265211a5261eSBarry Smith The order of the entries in values is specified by the `MatOption` `MAT_ROW_ORIENTED`. For example, C programs 265311a5261eSBarry Smith may want to use the default `MAT_ROW_ORIENTED` with value `PETSC_TRUE` and use an array v[nnz][bs][bs] where the second index is 26543adadaf3SJed Brown over rows within a block and the last index is over columns within a block row. Fortran programs will likely set 265511a5261eSBarry Smith `MAT_ROW_ORIENTED` with value `PETSC_FALSE` and use a Fortran array v(bs,bs,nnz) in which the first index is over rows within a 26563adadaf3SJed Brown block column and the second index is over columns within a block. 26573adadaf3SJed Brown 2658664954b6SBarry Smith Though this routine has Preallocation() in the name it also sets the exact nonzero locations of the matrix entries and usually the numerical values as well 2659664954b6SBarry Smith 26607d2c085eSPierre Jolivet .seealso: `Mat`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIBAIJSetPreallocation()`, `MatCreateAIJ()`, `MATMPIAIJ`, `MatCreateMPIBAIJWithArrays()`, `MATMPIBAIJ` 2661aac34f13SBarry Smith @*/ 2662d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIBAIJSetPreallocationCSR(Mat B, PetscInt bs, const PetscInt i[], const PetscInt j[], const PetscScalar v[]) 2663d71ae5a4SJacob Faibussowitsch { 2664aac34f13SBarry Smith PetscFunctionBegin; 26656ba663aaSJed Brown PetscValidHeaderSpecific(B, MAT_CLASSID, 1); 26666ba663aaSJed Brown PetscValidType(B, 1); 26676ba663aaSJed Brown PetscValidLogicalCollectiveInt(B, bs, 2); 2668cac4c232SBarry Smith PetscTryMethod(B, "MatMPIBAIJSetPreallocationCSR_C", (Mat, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[]), (B, bs, i, j, v)); 26693ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2670aac34f13SBarry Smith } 2671aac34f13SBarry Smith 2672d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIBAIJSetPreallocation_MPIBAIJ(Mat B, PetscInt bs, PetscInt d_nz, const PetscInt *d_nnz, PetscInt o_nz, const PetscInt *o_nnz) 2673d71ae5a4SJacob Faibussowitsch { 2674ad79cf63SBarry Smith Mat_MPIBAIJ *b = (Mat_MPIBAIJ *)B->data; 2675535b19f3SBarry Smith PetscInt i; 26765d2a9ed1SStefano Zampini PetscMPIInt size; 2677a23d5eceSKris Buschelman 2678a23d5eceSKris Buschelman PetscFunctionBegin; 2679ad79cf63SBarry Smith if (B->hash_active) { 2680aea10558SJacob Faibussowitsch B->ops[0] = b->cops; 2681ad79cf63SBarry Smith B->hash_active = PETSC_FALSE; 2682ad79cf63SBarry Smith } 2683ad79cf63SBarry Smith if (!B->preallocated) PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)B), bs, &B->bstash)); 268458b7e2c1SStefano Zampini PetscCall(MatSetBlockSize(B, bs)); 26859566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->rmap)); 26869566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->cmap)); 26879566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetBlockSize(B->rmap, &bs)); 2688899cda47SBarry Smith 2689a23d5eceSKris Buschelman if (d_nnz) { 2690ad540459SPierre Jolivet for (i = 0; i < B->rmap->n / bs; i++) PetscCheck(d_nnz[i] >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "d_nnz cannot be less than -1: local row %" PetscInt_FMT " value %" PetscInt_FMT, i, d_nnz[i]); 2691a23d5eceSKris Buschelman } 2692a23d5eceSKris Buschelman if (o_nnz) { 2693ad540459SPierre Jolivet for (i = 0; i < B->rmap->n / bs; i++) PetscCheck(o_nnz[i] >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "o_nnz cannot be less than -1: local row %" PetscInt_FMT " value %" PetscInt_FMT, i, o_nnz[i]); 2694a23d5eceSKris Buschelman } 2695a23d5eceSKris Buschelman 2696a23d5eceSKris Buschelman b->bs2 = bs * bs; 2697d0f46423SBarry Smith b->mbs = B->rmap->n / bs; 2698d0f46423SBarry Smith b->nbs = B->cmap->n / bs; 2699d0f46423SBarry Smith b->Mbs = B->rmap->N / bs; 2700d0f46423SBarry Smith b->Nbs = B->cmap->N / bs; 2701a23d5eceSKris Buschelman 2702ad540459SPierre Jolivet for (i = 0; i <= b->size; i++) b->rangebs[i] = B->rmap->range[i] / bs; 2703d0f46423SBarry Smith b->rstartbs = B->rmap->rstart / bs; 2704d0f46423SBarry Smith b->rendbs = B->rmap->rend / bs; 2705d0f46423SBarry Smith b->cstartbs = B->cmap->rstart / bs; 2706d0f46423SBarry Smith b->cendbs = B->cmap->rend / bs; 2707a23d5eceSKris Buschelman 2708cb7b82ddSBarry Smith #if defined(PETSC_USE_CTABLE) 2709eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIDestroy(&b->colmap)); 2710cb7b82ddSBarry Smith #else 27119566063dSJacob Faibussowitsch PetscCall(PetscFree(b->colmap)); 2712cb7b82ddSBarry Smith #endif 27139566063dSJacob Faibussowitsch PetscCall(PetscFree(b->garray)); 27149566063dSJacob Faibussowitsch PetscCall(VecDestroy(&b->lvec)); 27159566063dSJacob Faibussowitsch PetscCall(VecScatterDestroy(&b->Mvctx)); 2716cb7b82ddSBarry Smith 27179566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)B), &size)); 2718c508b908SBarry Smith 2719c508b908SBarry Smith MatSeqXAIJGetOptions_Private(b->B); 27209566063dSJacob Faibussowitsch PetscCall(MatDestroy(&b->B)); 27219566063dSJacob Faibussowitsch PetscCall(MatCreate(PETSC_COMM_SELF, &b->B)); 27229566063dSJacob Faibussowitsch PetscCall(MatSetSizes(b->B, B->rmap->n, size > 1 ? B->cmap->N : 0, B->rmap->n, size > 1 ? B->cmap->N : 0)); 27239566063dSJacob Faibussowitsch PetscCall(MatSetType(b->B, MATSEQBAIJ)); 2724c508b908SBarry Smith MatSeqXAIJRestoreOptions_Private(b->B); 2725cb7b82ddSBarry Smith 2726c508b908SBarry Smith MatSeqXAIJGetOptions_Private(b->A); 2727ad79cf63SBarry Smith PetscCall(MatDestroy(&b->A)); 27289566063dSJacob Faibussowitsch PetscCall(MatCreate(PETSC_COMM_SELF, &b->A)); 27299566063dSJacob Faibussowitsch PetscCall(MatSetSizes(b->A, B->rmap->n, B->cmap->n, B->rmap->n, B->cmap->n)); 27309566063dSJacob Faibussowitsch PetscCall(MatSetType(b->A, MATSEQBAIJ)); 2731c508b908SBarry Smith MatSeqXAIJRestoreOptions_Private(b->A); 2732a23d5eceSKris Buschelman 27339566063dSJacob Faibussowitsch PetscCall(MatSeqBAIJSetPreallocation(b->A, bs, d_nz, d_nnz)); 27349566063dSJacob Faibussowitsch PetscCall(MatSeqBAIJSetPreallocation(b->B, bs, o_nz, o_nnz)); 2735526dfc15SBarry Smith B->preallocated = PETSC_TRUE; 2736cb7b82ddSBarry Smith B->was_assembled = PETSC_FALSE; 2737cb7b82ddSBarry Smith B->assembled = PETSC_FALSE; 27383ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2739a23d5eceSKris Buschelman } 2740a23d5eceSKris Buschelman 27417087cfbeSBarry Smith extern PetscErrorCode MatDiagonalScaleLocal_MPIBAIJ(Mat, Vec); 27427087cfbeSBarry Smith extern PetscErrorCode MatSetHashTableFactor_MPIBAIJ(Mat, PetscReal); 27435bf65638SKris Buschelman 2744d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode MatConvert_MPIBAIJ_MPIAdj(Mat B, MatType newtype, MatReuse reuse, Mat *adj) 2745d71ae5a4SJacob Faibussowitsch { 274682094794SBarry Smith Mat_MPIBAIJ *b = (Mat_MPIBAIJ *)B->data; 274782094794SBarry Smith Mat_SeqBAIJ *d = (Mat_SeqBAIJ *)b->A->data, *o = (Mat_SeqBAIJ *)b->B->data; 274882094794SBarry Smith PetscInt M = B->rmap->n / B->rmap->bs, i, *ii, *jj, cnt, j, k, rstart = B->rmap->rstart / B->rmap->bs; 274982094794SBarry Smith const PetscInt *id = d->i, *jd = d->j, *io = o->i, *jo = o->j, *garray = b->garray; 275082094794SBarry Smith 275182094794SBarry Smith PetscFunctionBegin; 27529566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(M + 1, &ii)); 275382094794SBarry Smith ii[0] = 0; 275482094794SBarry Smith for (i = 0; i < M; i++) { 275508401ef6SPierre Jolivet PetscCheck((id[i + 1] - id[i]) >= 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Indices wrong %" PetscInt_FMT " %" PetscInt_FMT " %" PetscInt_FMT, i, id[i], id[i + 1]); 275608401ef6SPierre Jolivet PetscCheck((io[i + 1] - io[i]) >= 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Indices wrong %" PetscInt_FMT " %" PetscInt_FMT " %" PetscInt_FMT, i, io[i], io[i + 1]); 275782094794SBarry Smith ii[i + 1] = ii[i] + id[i + 1] - id[i] + io[i + 1] - io[i]; 27585ee9ba1cSJed Brown /* remove one from count of matrix has diagonal */ 27595ee9ba1cSJed Brown for (j = id[i]; j < id[i + 1]; j++) { 27609371c9d4SSatish Balay if (jd[j] == i) { 27619371c9d4SSatish Balay ii[i + 1]--; 27629371c9d4SSatish Balay break; 27639371c9d4SSatish Balay } 27645ee9ba1cSJed Brown } 276582094794SBarry Smith } 27669566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(ii[M], &jj)); 276782094794SBarry Smith cnt = 0; 276882094794SBarry Smith for (i = 0; i < M; i++) { 276982094794SBarry Smith for (j = io[i]; j < io[i + 1]; j++) { 277082094794SBarry Smith if (garray[jo[j]] > rstart) break; 277182094794SBarry Smith jj[cnt++] = garray[jo[j]]; 277282094794SBarry Smith } 277382094794SBarry Smith for (k = id[i]; k < id[i + 1]; k++) { 2774ad540459SPierre Jolivet if (jd[k] != i) jj[cnt++] = rstart + jd[k]; 277582094794SBarry Smith } 2776ad540459SPierre Jolivet for (; j < io[i + 1]; j++) jj[cnt++] = garray[jo[j]]; 277782094794SBarry Smith } 27789566063dSJacob Faibussowitsch PetscCall(MatCreateMPIAdj(PetscObjectComm((PetscObject)B), M, B->cmap->N / B->rmap->bs, ii, jj, NULL, adj)); 27793ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 278082094794SBarry Smith } 278182094794SBarry Smith 2782c6db04a5SJed Brown #include <../src/mat/impls/aij/mpi/mpiaij.h> 278362471d69SBarry Smith 2784cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_SeqBAIJ_SeqAIJ(Mat, MatType, MatReuse, Mat *); 2785b2573a8aSBarry Smith 2786d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode MatConvert_MPIBAIJ_MPIAIJ(Mat A, MatType newtype, MatReuse reuse, Mat *newmat) 2787d71ae5a4SJacob Faibussowitsch { 278862471d69SBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 278985a69837SSatish Balay Mat_MPIAIJ *b; 27905f80ce2aSJacob Faibussowitsch Mat B; 279162471d69SBarry Smith 279262471d69SBarry Smith PetscFunctionBegin; 27935f80ce2aSJacob Faibussowitsch PetscCheck(A->assembled, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Matrix must be assembled"); 279462471d69SBarry Smith 27950f6d62edSLisandro Dalcin if (reuse == MAT_REUSE_MATRIX) { 27960f6d62edSLisandro Dalcin B = *newmat; 27970f6d62edSLisandro Dalcin } else { 27989566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)A), &B)); 27999566063dSJacob Faibussowitsch PetscCall(MatSetType(B, MATMPIAIJ)); 28009566063dSJacob Faibussowitsch PetscCall(MatSetSizes(B, A->rmap->n, A->cmap->n, A->rmap->N, A->cmap->N)); 28019566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizes(B, A->rmap->bs, A->cmap->bs)); 28029566063dSJacob Faibussowitsch PetscCall(MatSeqAIJSetPreallocation(B, 0, NULL)); 28039566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(B, 0, NULL, 0, NULL)); 28040f6d62edSLisandro Dalcin } 280562471d69SBarry Smith b = (Mat_MPIAIJ *)B->data; 280662471d69SBarry Smith 28070f6d62edSLisandro Dalcin if (reuse == MAT_REUSE_MATRIX) { 28089566063dSJacob Faibussowitsch PetscCall(MatConvert_SeqBAIJ_SeqAIJ(a->A, MATSEQAIJ, MAT_REUSE_MATRIX, &b->A)); 28099566063dSJacob Faibussowitsch PetscCall(MatConvert_SeqBAIJ_SeqAIJ(a->B, MATSEQAIJ, MAT_REUSE_MATRIX, &b->B)); 28100f6d62edSLisandro Dalcin } else { 28117c612885SStefano Zampini PetscInt *garray = a->garray; 28127c612885SStefano Zampini Mat_SeqAIJ *bB; 28137c612885SStefano Zampini PetscInt bs, nnz; 28149566063dSJacob Faibussowitsch PetscCall(MatDestroy(&b->A)); 28159566063dSJacob Faibussowitsch PetscCall(MatDestroy(&b->B)); 28167c612885SStefano Zampini /* just clear out the data structure */ 2817eb14dd14SAlex Lindsay PetscCall(MatDisAssemble_MPIAIJ(B, PETSC_FALSE)); 28189566063dSJacob Faibussowitsch PetscCall(MatConvert_SeqBAIJ_SeqAIJ(a->A, MATSEQAIJ, MAT_INITIAL_MATRIX, &b->A)); 28199566063dSJacob Faibussowitsch PetscCall(MatConvert_SeqBAIJ_SeqAIJ(a->B, MATSEQAIJ, MAT_INITIAL_MATRIX, &b->B)); 28207c612885SStefano Zampini 28217c612885SStefano Zampini /* Global numbering for b->B columns */ 28227c612885SStefano Zampini bB = (Mat_SeqAIJ *)b->B->data; 28237c612885SStefano Zampini bs = A->rmap->bs; 28247c612885SStefano Zampini nnz = bB->i[A->rmap->n]; 28257c612885SStefano Zampini for (PetscInt k = 0; k < nnz; k++) { 28267c612885SStefano Zampini PetscInt bj = bB->j[k] / bs; 28277c612885SStefano Zampini PetscInt br = bB->j[k] % bs; 28287c612885SStefano Zampini bB->j[k] = garray[bj] * bs + br; 28297c612885SStefano Zampini } 28300f6d62edSLisandro Dalcin } 28319566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY)); 28329566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY)); 28330f6d62edSLisandro Dalcin 2834511c6705SHong Zhang if (reuse == MAT_INPLACE_MATRIX) { 28359566063dSJacob Faibussowitsch PetscCall(MatHeaderReplace(A, &B)); 283662471d69SBarry Smith } else { 283762471d69SBarry Smith *newmat = B; 283862471d69SBarry Smith } 28393ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 284062471d69SBarry Smith } 284162471d69SBarry Smith 28420bad9183SKris Buschelman /*MC 2843fafad747SKris Buschelman MATMPIBAIJ - MATMPIBAIJ = "mpibaij" - A matrix type to be used for distributed block sparse matrices. 28440bad9183SKris Buschelman 28450bad9183SKris Buschelman Options Database Keys: 284611a5261eSBarry Smith + -mat_type mpibaij - sets the matrix type to `MATMPIBAIJ` during a call to `MatSetFromOptions()` 28478c07d4e3SBarry Smith . -mat_block_size <bs> - set the blocksize used to store the matrix 28486679dcc1SBarry Smith . -mat_baij_mult_version version - indicate the version of the matrix-vector product to use (0 often indicates using BLAS) 284967b8a455SSatish Balay - -mat_use_hash_table <fact> - set hash table factor 28500bad9183SKris Buschelman 28510bad9183SKris Buschelman Level: beginner 28520cd7f59aSBarry Smith 285311a5261eSBarry Smith Note: 28545e0ad47dSPierre Jolivet `MatSetOption(A, MAT_STRUCTURE_ONLY, PETSC_TRUE)` may be called for this matrix type. In this no 285511a5261eSBarry Smith space is allocated for the nonzero entries and any entries passed with `MatSetValues()` are ignored 28560bad9183SKris Buschelman 28575e0ad47dSPierre Jolivet .seealso: `Mat`, `MATBAIJ`, `MATSEQBAIJ`, `MatCreateBAIJ` 28580bad9183SKris Buschelman M*/ 28590bad9183SKris Buschelman 2860cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIBAIJ_MPIBSTRM(Mat, MatType, MatReuse, Mat *); 2861c0cdd4a1SDahai Guo 2862d71ae5a4SJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatCreate_MPIBAIJ(Mat B) 2863d71ae5a4SJacob Faibussowitsch { 2864273d9f13SBarry Smith Mat_MPIBAIJ *b; 286594ae4db5SBarry Smith PetscBool flg = PETSC_FALSE; 2866273d9f13SBarry Smith 2867273d9f13SBarry Smith PetscFunctionBegin; 28684dfa11a4SJacob Faibussowitsch PetscCall(PetscNew(&b)); 286982502324SSatish Balay B->data = (void *)b; 2870aea10558SJacob Faibussowitsch B->ops[0] = MatOps_Values; 2871273d9f13SBarry Smith B->assembled = PETSC_FALSE; 2872273d9f13SBarry Smith 2873273d9f13SBarry Smith B->insertmode = NOT_SET_VALUES; 28749566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)B), &b->rank)); 28759566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)B), &b->size)); 2876273d9f13SBarry Smith 2877273d9f13SBarry Smith /* build local table of row and column ownerships */ 28789566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(b->size + 1, &b->rangebs)); 2879273d9f13SBarry Smith 2880273d9f13SBarry Smith /* build cache for off array entries formed */ 28819566063dSJacob Faibussowitsch PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)B), 1, &B->stash)); 288226fbe8dcSKarl Rupp 2883273d9f13SBarry Smith b->donotstash = PETSC_FALSE; 28840298fd71SBarry Smith b->colmap = NULL; 28850298fd71SBarry Smith b->garray = NULL; 2886273d9f13SBarry Smith b->roworiented = PETSC_TRUE; 2887273d9f13SBarry Smith 2888273d9f13SBarry Smith /* stuff used in block assembly */ 2889f4259b30SLisandro Dalcin b->barray = NULL; 2890273d9f13SBarry Smith 2891273d9f13SBarry Smith /* stuff used for matrix vector multiply */ 2892f4259b30SLisandro Dalcin b->lvec = NULL; 2893f4259b30SLisandro Dalcin b->Mvctx = NULL; 2894273d9f13SBarry Smith 2895273d9f13SBarry Smith /* stuff for MatGetRow() */ 2896f4259b30SLisandro Dalcin b->rowindices = NULL; 2897f4259b30SLisandro Dalcin b->rowvalues = NULL; 2898273d9f13SBarry Smith b->getrowactive = PETSC_FALSE; 2899273d9f13SBarry Smith 2900273d9f13SBarry Smith /* hash table stuff */ 2901f4259b30SLisandro Dalcin b->ht = NULL; 2902f4259b30SLisandro Dalcin b->hd = NULL; 2903273d9f13SBarry Smith b->ht_size = 0; 2904273d9f13SBarry Smith b->ht_flag = PETSC_FALSE; 2905273d9f13SBarry Smith b->ht_fact = 0; 2906273d9f13SBarry Smith b->ht_total_ct = 0; 2907273d9f13SBarry Smith b->ht_insert_ct = 0; 2908273d9f13SBarry Smith 29097dae84e0SHong Zhang /* stuff for MatCreateSubMatrices_MPIBAIJ_local() */ 29107a868f3eSHong Zhang b->ijonly = PETSC_FALSE; 29117a868f3eSHong Zhang 29129566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpibaij_mpiadj_C", MatConvert_MPIBAIJ_MPIAdj)); 29139566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpibaij_mpiaij_C", MatConvert_MPIBAIJ_MPIAIJ)); 29149566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpibaij_mpisbaij_C", MatConvert_MPIBAIJ_MPISBAIJ)); 29157ea3e4caSstefano_zampini #if defined(PETSC_HAVE_HYPRE) 29169566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpibaij_hypre_C", MatConvert_AIJ_HYPRE)); 29177ea3e4caSstefano_zampini #endif 29189566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatStoreValues_C", MatStoreValues_MPIBAIJ)); 29199566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatRetrieveValues_C", MatRetrieveValues_MPIBAIJ)); 29209566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMPIBAIJSetPreallocation_C", MatMPIBAIJSetPreallocation_MPIBAIJ)); 29219566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMPIBAIJSetPreallocationCSR_C", MatMPIBAIJSetPreallocationCSR_MPIBAIJ)); 29229566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatDiagonalScaleLocal_C", MatDiagonalScaleLocal_MPIBAIJ)); 29239566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatSetHashTableFactor_C", MatSetHashTableFactor_MPIBAIJ)); 29249566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpibaij_is_C", MatConvert_XAIJ_IS)); 29259566063dSJacob Faibussowitsch PetscCall(PetscObjectChangeTypeName((PetscObject)B, MATMPIBAIJ)); 292694ae4db5SBarry Smith 2927d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)B), NULL, "Options for loading MPIBAIJ matrix 1", "Mat"); 29289566063dSJacob Faibussowitsch PetscCall(PetscOptionsName("-mat_use_hash_table", "Use hash table to save time in constructing matrix", "MatSetOption", &flg)); 292994ae4db5SBarry Smith if (flg) { 293094ae4db5SBarry Smith PetscReal fact = 1.39; 29319566063dSJacob Faibussowitsch PetscCall(MatSetOption(B, MAT_USE_HASH_TABLE, PETSC_TRUE)); 29329566063dSJacob Faibussowitsch PetscCall(PetscOptionsReal("-mat_use_hash_table", "Use hash table factor", "MatMPIBAIJSetHashTableFactor", fact, &fact, NULL)); 293394ae4db5SBarry Smith if (fact <= 1.0) fact = 1.39; 29349566063dSJacob Faibussowitsch PetscCall(MatMPIBAIJSetHashTableFactor(B, fact)); 29359566063dSJacob Faibussowitsch PetscCall(PetscInfo(B, "Hash table Factor used %5.2g\n", (double)fact)); 293694ae4db5SBarry Smith } 2937d0609cedSBarry Smith PetscOptionsEnd(); 29383ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2939273d9f13SBarry Smith } 2940273d9f13SBarry Smith 29412920cce0SJacob Faibussowitsch // PetscClangLinter pragma disable: -fdoc-section-header-unknown 2942209238afSKris Buschelman /*MC 2943002d173eSKris Buschelman MATBAIJ - MATBAIJ = "baij" - A matrix type to be used for block sparse matrices. 2944209238afSKris Buschelman 294511a5261eSBarry Smith This matrix type is identical to `MATSEQBAIJ` when constructed with a single process communicator, 294611a5261eSBarry Smith and `MATMPIBAIJ` otherwise. 2947209238afSKris Buschelman 2948209238afSKris Buschelman Options Database Keys: 294911a5261eSBarry Smith . -mat_type baij - sets the matrix type to `MATBAIJ` during a call to `MatSetFromOptions()` 2950209238afSKris Buschelman 2951209238afSKris Buschelman Level: beginner 2952209238afSKris Buschelman 295367be906fSBarry Smith .seealso: `Mat`, `MatCreateBAIJ()`, `MATSEQBAIJ`, `MATMPIBAIJ`, `MatMPIBAIJSetPreallocation()`, `MatMPIBAIJSetPreallocationCSR()` 2954209238afSKris Buschelman M*/ 2955209238afSKris Buschelman 29565d83a8b1SBarry Smith /*@ 295711a5261eSBarry Smith MatMPIBAIJSetPreallocation - Allocates memory for a sparse parallel matrix in `MATMPIBAIJ` format 295867be906fSBarry Smith (block compressed row). 2959273d9f13SBarry Smith 2960c3339decSBarry Smith Collective 2961273d9f13SBarry Smith 2962273d9f13SBarry Smith Input Parameters: 29631c4f3114SJed Brown + B - the matrix 296411a5261eSBarry Smith . bs - size of block, the blocks are ALWAYS square. One can use `MatSetBlockSizes()` to set a different row and column blocksize but the row 296567be906fSBarry Smith blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with `MatCreateVecs()` 2966273d9f13SBarry Smith . d_nz - number of block nonzeros per block row in diagonal portion of local 2967273d9f13SBarry Smith submatrix (same for all local rows) 2968273d9f13SBarry Smith . d_nnz - array containing the number of block nonzeros in the various block rows 2969273d9f13SBarry Smith of the in diagonal portion of the local (possibly different for each block 297067be906fSBarry Smith row) or `NULL`. If you plan to factor the matrix you must leave room for the diagonal entry and 297195742e49SBarry Smith set it even if it is zero. 2972273d9f13SBarry Smith . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 2973273d9f13SBarry Smith submatrix (same for all local rows). 2974273d9f13SBarry Smith - o_nnz - array containing the number of nonzeros in the various block rows of the 2975273d9f13SBarry Smith off-diagonal portion of the local submatrix (possibly different for 297667be906fSBarry Smith each block row) or `NULL`. 2977273d9f13SBarry Smith 297849a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 2979273d9f13SBarry Smith 2980273d9f13SBarry Smith Options Database Keys: 29818c07d4e3SBarry Smith + -mat_block_size - size of the blocks to use 298267b8a455SSatish Balay - -mat_use_hash_table <fact> - set hash table factor 2983273d9f13SBarry Smith 298467be906fSBarry Smith Level: intermediate 298567be906fSBarry Smith 2986273d9f13SBarry Smith Notes: 298767be906fSBarry Smith For good matrix assembly performance 298867be906fSBarry Smith the user should preallocate the matrix storage by setting the parameters 298967be906fSBarry Smith `d_nz` (or `d_nnz`) and `o_nz` (or `o_nnz`). By setting these parameters accurately, 299067be906fSBarry Smith performance can be increased by more than a factor of 50. 299167be906fSBarry Smith 299211a5261eSBarry Smith If `PETSC_DECIDE` or `PETSC_DETERMINE` is used for a particular argument on one processor 2993273d9f13SBarry Smith than it must be used on all processors that share the object for that argument. 2994273d9f13SBarry Smith 2995273d9f13SBarry Smith Storage Information: 2996273d9f13SBarry Smith For a square global matrix we define each processor's diagonal portion 2997273d9f13SBarry Smith to be its local rows and the corresponding columns (a square submatrix); 2998273d9f13SBarry Smith each processor's off-diagonal portion encompasses the remainder of the 2999273d9f13SBarry Smith local matrix (a rectangular submatrix). 3000273d9f13SBarry Smith 3001273d9f13SBarry Smith The user can specify preallocated storage for the diagonal part of 300267be906fSBarry Smith the local submatrix with either `d_nz` or `d_nnz` (not both). Set 300367be906fSBarry Smith `d_nz` = `PETSC_DEFAULT` and `d_nnz` = `NULL` for PETSc to control dynamic 3004273d9f13SBarry Smith memory allocation. Likewise, specify preallocated storage for the 300567be906fSBarry Smith off-diagonal part of the local submatrix with `o_nz` or `o_nnz` (not both). 3006273d9f13SBarry Smith 3007273d9f13SBarry Smith Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 3008273d9f13SBarry Smith the figure below we depict these three local rows and all columns (0-11). 3009273d9f13SBarry Smith 3010273d9f13SBarry Smith .vb 3011273d9f13SBarry Smith 0 1 2 3 4 5 6 7 8 9 10 11 3012a4b1a0f6SJed Brown -------------------------- 3013273d9f13SBarry Smith row 3 |o o o d d d o o o o o o 3014273d9f13SBarry Smith row 4 |o o o d d d o o o o o o 3015273d9f13SBarry Smith row 5 |o o o d d d o o o o o o 3016a4b1a0f6SJed Brown -------------------------- 3017273d9f13SBarry Smith .ve 3018273d9f13SBarry Smith 3019273d9f13SBarry Smith Thus, any entries in the d locations are stored in the d (diagonal) 3020273d9f13SBarry Smith submatrix, and any entries in the o locations are stored in the 3021273d9f13SBarry Smith o (off-diagonal) submatrix. Note that the d and the o submatrices are 302211a5261eSBarry Smith stored simply in the `MATSEQBAIJ` format for compressed row storage. 3023273d9f13SBarry Smith 302467be906fSBarry Smith Now `d_nz` should indicate the number of block nonzeros per row in the d matrix, 302567be906fSBarry Smith and `o_nz` should indicate the number of block nonzeros per row in the o matrix. 3026273d9f13SBarry Smith In general, for PDE problems in which most nonzeros are near the diagonal, 302720f4b53cSBarry Smith one expects `d_nz` >> `o_nz`. 3028273d9f13SBarry Smith 302911a5261eSBarry Smith You can call `MatGetInfo()` to get information on how effective the preallocation was; 3030aa95bbe8SBarry Smith for example the fields mallocs,nz_allocated,nz_used,nz_unneeded; 303167be906fSBarry Smith You can also run with the option `-info` and look for messages with the string 3032aa95bbe8SBarry Smith malloc in them to see if additional memory allocation was needed. 3033aa95bbe8SBarry Smith 303467be906fSBarry Smith .seealso: `Mat`, `MATMPIBAIJ`, `MatCreate()`, `MatCreateSeqBAIJ()`, `MatSetValues()`, `MatCreateBAIJ()`, `MatMPIBAIJSetPreallocationCSR()`, `PetscSplitOwnership()` 3035273d9f13SBarry Smith @*/ 3036d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIBAIJSetPreallocation(Mat B, PetscInt bs, PetscInt d_nz, const PetscInt d_nnz[], PetscInt o_nz, const PetscInt o_nnz[]) 3037d71ae5a4SJacob Faibussowitsch { 3038273d9f13SBarry Smith PetscFunctionBegin; 30396ba663aaSJed Brown PetscValidHeaderSpecific(B, MAT_CLASSID, 1); 30406ba663aaSJed Brown PetscValidType(B, 1); 30416ba663aaSJed Brown PetscValidLogicalCollectiveInt(B, bs, 2); 3042cac4c232SBarry Smith PetscTryMethod(B, "MatMPIBAIJSetPreallocation_C", (Mat, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[]), (B, bs, d_nz, d_nnz, o_nz, o_nnz)); 30433ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3044273d9f13SBarry Smith } 3045273d9f13SBarry Smith 30462920cce0SJacob Faibussowitsch // PetscClangLinter pragma disable: -fdoc-section-header-unknown 30475d83a8b1SBarry Smith /*@ 304811a5261eSBarry Smith MatCreateBAIJ - Creates a sparse parallel matrix in `MATBAIJ` format 304967be906fSBarry Smith (block compressed row). 305079bdfe76SSatish Balay 3051d083f849SBarry Smith Collective 3052db81eaa0SLois Curfman McInnes 305379bdfe76SSatish Balay Input Parameters: 3054db81eaa0SLois Curfman McInnes + comm - MPI communicator 305511a5261eSBarry Smith . bs - size of block, the blocks are ALWAYS square. One can use `MatSetBlockSizes()` to set a different row and column blocksize but the row 305611a5261eSBarry Smith blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with `MatCreateVecs()` 305711a5261eSBarry Smith . m - number of local rows (or `PETSC_DECIDE` to have calculated if M is given) 305892e8d321SLois Curfman McInnes This value should be the same as the local size used in creating the 305992e8d321SLois Curfman McInnes y vector for the matrix-vector product y = Ax. 306011a5261eSBarry Smith . n - number of local columns (or `PETSC_DECIDE` to have calculated if N is given) 306192e8d321SLois Curfman McInnes This value should be the same as the local size used in creating the 306292e8d321SLois Curfman McInnes x vector for the matrix-vector product y = Ax. 306311a5261eSBarry Smith . M - number of global rows (or `PETSC_DETERMINE` to have calculated if m is given) 306411a5261eSBarry Smith . N - number of global columns (or `PETSC_DETERMINE` to have calculated if n is given) 306547a75d0bSBarry Smith . d_nz - number of nonzero blocks per block row in diagonal portion of local 306679bdfe76SSatish Balay submatrix (same for all local rows) 306747a75d0bSBarry Smith . d_nnz - array containing the number of nonzero blocks in the various block rows 306892e8d321SLois Curfman McInnes of the in diagonal portion of the local (possibly different for each block 30690298fd71SBarry Smith row) or NULL. If you plan to factor the matrix you must leave room for the diagonal entry 307095742e49SBarry Smith and set it even if it is zero. 307147a75d0bSBarry Smith . o_nz - number of nonzero blocks per block row in the off-diagonal portion of local 307279bdfe76SSatish Balay submatrix (same for all local rows). 307347a75d0bSBarry Smith - o_nnz - array containing the number of nonzero blocks in the various block rows of the 307492e8d321SLois Curfman McInnes off-diagonal portion of the local submatrix (possibly different for 30750298fd71SBarry Smith each block row) or NULL. 307679bdfe76SSatish Balay 307779bdfe76SSatish Balay Output Parameter: 307879bdfe76SSatish Balay . A - the matrix 307979bdfe76SSatish Balay 3080db81eaa0SLois Curfman McInnes Options Database Keys: 30818c07d4e3SBarry Smith + -mat_block_size - size of the blocks to use 308267b8a455SSatish Balay - -mat_use_hash_table <fact> - set hash table factor 30833ffaccefSLois Curfman McInnes 308467be906fSBarry Smith Level: intermediate 308567be906fSBarry Smith 308667be906fSBarry Smith Notes: 308777433607SBarry Smith It is recommended that one use `MatCreateFromOptions()` or the `MatCreate()`, `MatSetType()` and/or `MatSetFromOptions()`, 308877433607SBarry Smith MatXXXXSetPreallocation() paradigm instead of this routine directly. 308977433607SBarry Smith [MatXXXXSetPreallocation() is, for example, `MatSeqBAIJSetPreallocation()`] 309077433607SBarry Smith 309167be906fSBarry Smith For good matrix assembly performance 309267be906fSBarry Smith the user should preallocate the matrix storage by setting the parameters 309367be906fSBarry Smith `d_nz` (or `d_nnz`) and `o_nz` (or `o_nnz`). By setting these parameters accurately, 309467be906fSBarry Smith performance can be increased by more than a factor of 50. 309567be906fSBarry Smith 309649a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 309749a6f317SBarry Smith 309847a75d0bSBarry Smith A nonzero block is any block that as 1 or more nonzeros in it 309947a75d0bSBarry Smith 310079bdfe76SSatish Balay The user MUST specify either the local or global matrix dimensions 310179bdfe76SSatish Balay (possibly both). 310279bdfe76SSatish Balay 310311a5261eSBarry Smith If `PETSC_DECIDE` or `PETSC_DETERMINE` is used for a particular argument on one processor 3104be79a94dSBarry Smith than it must be used on all processors that share the object for that argument. 3105be79a94dSBarry Smith 3106727bdf9bSBarry Smith If `m` and `n` are not `PETSC_DECIDE`, then the values determine the `PetscLayout` of the matrix and the ranges returned by 3107727bdf9bSBarry Smith `MatGetOwnershipRange()`, `MatGetOwnershipRanges()`, `MatGetOwnershipRangeColumn()`, and `MatGetOwnershipRangesColumn()`. 3108727bdf9bSBarry Smith 310979bdfe76SSatish Balay Storage Information: 311079bdfe76SSatish Balay For a square global matrix we define each processor's diagonal portion 311179bdfe76SSatish Balay to be its local rows and the corresponding columns (a square submatrix); 311279bdfe76SSatish Balay each processor's off-diagonal portion encompasses the remainder of the 311379bdfe76SSatish Balay local matrix (a rectangular submatrix). 311479bdfe76SSatish Balay 311579bdfe76SSatish Balay The user can specify preallocated storage for the diagonal part of 311679bdfe76SSatish Balay the local submatrix with either d_nz or d_nnz (not both). Set 311767be906fSBarry Smith `d_nz` = `PETSC_DEFAULT` and `d_nnz` = `NULL` for PETSc to control dynamic 311879bdfe76SSatish Balay memory allocation. Likewise, specify preallocated storage for the 311967be906fSBarry Smith off-diagonal part of the local submatrix with `o_nz` or `o_nnz` (not both). 312079bdfe76SSatish Balay 312179bdfe76SSatish Balay Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 312279bdfe76SSatish Balay the figure below we depict these three local rows and all columns (0-11). 312379bdfe76SSatish Balay 3124db81eaa0SLois Curfman McInnes .vb 3125db81eaa0SLois Curfman McInnes 0 1 2 3 4 5 6 7 8 9 10 11 3126a4b1a0f6SJed Brown -------------------------- 3127db81eaa0SLois Curfman McInnes row 3 |o o o d d d o o o o o o 3128db81eaa0SLois Curfman McInnes row 4 |o o o d d d o o o o o o 3129db81eaa0SLois Curfman McInnes row 5 |o o o d d d o o o o o o 3130a4b1a0f6SJed Brown -------------------------- 3131db81eaa0SLois Curfman McInnes .ve 313279bdfe76SSatish Balay 313379bdfe76SSatish Balay Thus, any entries in the d locations are stored in the d (diagonal) 313479bdfe76SSatish Balay submatrix, and any entries in the o locations are stored in the 313579bdfe76SSatish Balay o (off-diagonal) submatrix. Note that the d and the o submatrices are 313611a5261eSBarry Smith stored simply in the `MATSEQBAIJ` format for compressed row storage. 313779bdfe76SSatish Balay 313867be906fSBarry Smith Now `d_nz` should indicate the number of block nonzeros per row in the d matrix, 313967be906fSBarry Smith and `o_nz` should indicate the number of block nonzeros per row in the o matrix. 314079bdfe76SSatish Balay In general, for PDE problems in which most nonzeros are near the diagonal, 314120f4b53cSBarry Smith one expects `d_nz` >> `o_nz`. 314279bdfe76SSatish Balay 3143727bdf9bSBarry Smith .seealso: `Mat`, `MatCreate()`, `MatCreateSeqBAIJ()`, `MatSetValues()`, `MatMPIBAIJSetPreallocation()`, `MatMPIBAIJSetPreallocationCSR()`, 3144727bdf9bSBarry Smith `MatGetOwnershipRange()`, `MatGetOwnershipRanges()`, `MatGetOwnershipRangeColumn()`, `MatGetOwnershipRangesColumn()`, `PetscLayout` 314579bdfe76SSatish Balay @*/ 3146d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateBAIJ(MPI_Comm comm, PetscInt bs, PetscInt m, PetscInt n, PetscInt M, PetscInt N, PetscInt d_nz, const PetscInt d_nnz[], PetscInt o_nz, const PetscInt o_nnz[], Mat *A) 3147d71ae5a4SJacob Faibussowitsch { 3148b24ad042SBarry Smith PetscMPIInt size; 314979bdfe76SSatish Balay 3150d64ed03dSBarry Smith PetscFunctionBegin; 31519566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, A)); 31529566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*A, m, n, M, N)); 31539566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 3154273d9f13SBarry Smith if (size > 1) { 31559566063dSJacob Faibussowitsch PetscCall(MatSetType(*A, MATMPIBAIJ)); 31569566063dSJacob Faibussowitsch PetscCall(MatMPIBAIJSetPreallocation(*A, bs, d_nz, d_nnz, o_nz, o_nnz)); 3157273d9f13SBarry Smith } else { 31589566063dSJacob Faibussowitsch PetscCall(MatSetType(*A, MATSEQBAIJ)); 31599566063dSJacob Faibussowitsch PetscCall(MatSeqBAIJSetPreallocation(*A, bs, d_nz, d_nnz)); 31603914022bSBarry Smith } 31613ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 316279bdfe76SSatish Balay } 3163026e39d0SSatish Balay 3164d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatDuplicate_MPIBAIJ(Mat matin, MatDuplicateOption cpvalues, Mat *newmat) 3165d71ae5a4SJacob Faibussowitsch { 31660ac07820SSatish Balay Mat mat; 31670ac07820SSatish Balay Mat_MPIBAIJ *a, *oldmat = (Mat_MPIBAIJ *)matin->data; 3168b24ad042SBarry Smith PetscInt len = 0; 31690ac07820SSatish Balay 3170d64ed03dSBarry Smith PetscFunctionBegin; 3171f4259b30SLisandro Dalcin *newmat = NULL; 31729566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)matin), &mat)); 31739566063dSJacob Faibussowitsch PetscCall(MatSetSizes(mat, matin->rmap->n, matin->cmap->n, matin->rmap->N, matin->cmap->N)); 31749566063dSJacob Faibussowitsch PetscCall(MatSetType(mat, ((PetscObject)matin)->type_name)); 31757fff6886SHong Zhang 3176420957c1SBarry Smith PetscCall(PetscLayoutReference(matin->rmap, &mat->rmap)); 3177420957c1SBarry Smith PetscCall(PetscLayoutReference(matin->cmap, &mat->cmap)); 3178420957c1SBarry Smith if (matin->hash_active) { 3179420957c1SBarry Smith PetscCall(MatSetUp(mat)); 3180420957c1SBarry Smith } else { 3181d5f3da31SBarry Smith mat->factortype = matin->factortype; 3182273d9f13SBarry Smith mat->preallocated = PETSC_TRUE; 31830ac07820SSatish Balay mat->assembled = PETSC_TRUE; 31847fff6886SHong Zhang mat->insertmode = NOT_SET_VALUES; 31857fff6886SHong Zhang 3186273d9f13SBarry Smith a = (Mat_MPIBAIJ *)mat->data; 3187d0f46423SBarry Smith mat->rmap->bs = matin->rmap->bs; 31880ac07820SSatish Balay a->bs2 = oldmat->bs2; 31890ac07820SSatish Balay a->mbs = oldmat->mbs; 31900ac07820SSatish Balay a->nbs = oldmat->nbs; 31910ac07820SSatish Balay a->Mbs = oldmat->Mbs; 31920ac07820SSatish Balay a->Nbs = oldmat->Nbs; 31930ac07820SSatish Balay 31940ac07820SSatish Balay a->size = oldmat->size; 31950ac07820SSatish Balay a->rank = oldmat->rank; 3196aef5e8e0SSatish Balay a->donotstash = oldmat->donotstash; 3197aef5e8e0SSatish Balay a->roworiented = oldmat->roworiented; 3198f4259b30SLisandro Dalcin a->rowindices = NULL; 3199f4259b30SLisandro Dalcin a->rowvalues = NULL; 32000ac07820SSatish Balay a->getrowactive = PETSC_FALSE; 3201f4259b30SLisandro Dalcin a->barray = NULL; 3202899cda47SBarry Smith a->rstartbs = oldmat->rstartbs; 3203899cda47SBarry Smith a->rendbs = oldmat->rendbs; 3204899cda47SBarry Smith a->cstartbs = oldmat->cstartbs; 3205899cda47SBarry Smith a->cendbs = oldmat->cendbs; 32060ac07820SSatish Balay 3207133cdb44SSatish Balay /* hash table stuff */ 3208f4259b30SLisandro Dalcin a->ht = NULL; 3209f4259b30SLisandro Dalcin a->hd = NULL; 3210133cdb44SSatish Balay a->ht_size = 0; 3211133cdb44SSatish Balay a->ht_flag = oldmat->ht_flag; 321225fdafccSSatish Balay a->ht_fact = oldmat->ht_fact; 3213133cdb44SSatish Balay a->ht_total_ct = 0; 3214133cdb44SSatish Balay a->ht_insert_ct = 0; 3215133cdb44SSatish Balay 32169566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(a->rangebs, oldmat->rangebs, a->size + 1)); 32170ac07820SSatish Balay if (oldmat->colmap) { 3218aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 3219eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIDuplicate(oldmat->colmap, &a->colmap)); 322048e59246SSatish Balay #else 32219566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(a->Nbs, &a->colmap)); 32229566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(a->colmap, oldmat->colmap, a->Nbs)); 322348e59246SSatish Balay #endif 3224f4259b30SLisandro Dalcin } else a->colmap = NULL; 32254beb1cfeSHong Zhang 3226f4f49eeaSPierre Jolivet if (oldmat->garray && (len = ((Mat_SeqBAIJ *)oldmat->B->data)->nbs)) { 32279566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(len, &a->garray)); 32289566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(a->garray, oldmat->garray, len)); 3229f4259b30SLisandro Dalcin } else a->garray = NULL; 32300ac07820SSatish Balay 32319566063dSJacob Faibussowitsch PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)matin), matin->rmap->bs, &mat->bstash)); 32329566063dSJacob Faibussowitsch PetscCall(VecDuplicate(oldmat->lvec, &a->lvec)); 32339566063dSJacob Faibussowitsch PetscCall(VecScatterCopy(oldmat->Mvctx, &a->Mvctx)); 32347fff6886SHong Zhang 32359566063dSJacob Faibussowitsch PetscCall(MatDuplicate(oldmat->A, cpvalues, &a->A)); 32369566063dSJacob Faibussowitsch PetscCall(MatDuplicate(oldmat->B, cpvalues, &a->B)); 3237420957c1SBarry Smith } 32389566063dSJacob Faibussowitsch PetscCall(PetscFunctionListDuplicate(((PetscObject)matin)->qlist, &((PetscObject)mat)->qlist)); 32390ac07820SSatish Balay *newmat = mat; 32403ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 32410ac07820SSatish Balay } 324257b952d6SSatish Balay 3243618cc2edSLisandro Dalcin /* Used for both MPIBAIJ and MPISBAIJ matrices */ 3244d71ae5a4SJacob Faibussowitsch PetscErrorCode MatLoad_MPIBAIJ_Binary(Mat mat, PetscViewer viewer) 3245d71ae5a4SJacob Faibussowitsch { 3246b51a4376SLisandro Dalcin PetscInt header[4], M, N, nz, bs, m, n, mbs, nbs, rows, cols, sum, i, j, k; 3247b51a4376SLisandro Dalcin PetscInt *rowidxs, *colidxs, rs, cs, ce; 3248b51a4376SLisandro Dalcin PetscScalar *matvals; 3249b51a4376SLisandro Dalcin 3250b51a4376SLisandro Dalcin PetscFunctionBegin; 32519566063dSJacob Faibussowitsch PetscCall(PetscViewerSetUp(viewer)); 3252b51a4376SLisandro Dalcin 3253b51a4376SLisandro Dalcin /* read in matrix header */ 32549566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryRead(viewer, header, 4, NULL, PETSC_INT)); 32555f80ce2aSJacob Faibussowitsch PetscCheck(header[0] == MAT_FILE_CLASSID, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Not a matrix object in file"); 32569371c9d4SSatish Balay M = header[1]; 32579371c9d4SSatish Balay N = header[2]; 32589371c9d4SSatish Balay nz = header[3]; 32595f80ce2aSJacob Faibussowitsch PetscCheck(M >= 0, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Matrix row size (%" PetscInt_FMT ") in file is negative", M); 32605f80ce2aSJacob Faibussowitsch PetscCheck(N >= 0, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Matrix column size (%" PetscInt_FMT ") in file is negative", N); 32615f80ce2aSJacob Faibussowitsch PetscCheck(nz >= 0, PETSC_COMM_SELF, PETSC_ERR_FILE_UNEXPECTED, "Matrix stored in special format on disk, cannot load as MPIBAIJ"); 3262b51a4376SLisandro Dalcin 3263b51a4376SLisandro Dalcin /* set block sizes from the viewer's .info file */ 32649566063dSJacob Faibussowitsch PetscCall(MatLoad_Binary_BlockSizes(mat, viewer)); 3265618cc2edSLisandro Dalcin /* set local sizes if not set already */ 3266618cc2edSLisandro Dalcin if (mat->rmap->n < 0 && M == N) mat->rmap->n = mat->cmap->n; 3267618cc2edSLisandro Dalcin if (mat->cmap->n < 0 && M == N) mat->cmap->n = mat->rmap->n; 3268b51a4376SLisandro Dalcin /* set global sizes if not set already */ 3269b51a4376SLisandro Dalcin if (mat->rmap->N < 0) mat->rmap->N = M; 3270b51a4376SLisandro Dalcin if (mat->cmap->N < 0) mat->cmap->N = N; 32719566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(mat->rmap)); 32729566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(mat->cmap)); 3273b51a4376SLisandro Dalcin 3274b51a4376SLisandro Dalcin /* check if the matrix sizes are correct */ 32759566063dSJacob Faibussowitsch PetscCall(MatGetSize(mat, &rows, &cols)); 32765f80ce2aSJacob Faibussowitsch PetscCheck(M == rows && N == cols, PETSC_COMM_SELF, PETSC_ERR_FILE_UNEXPECTED, "Matrix in file of different sizes (%" PetscInt_FMT ", %" PetscInt_FMT ") than the input matrix (%" PetscInt_FMT ", %" PetscInt_FMT ")", M, N, rows, cols); 32779566063dSJacob Faibussowitsch PetscCall(MatGetBlockSize(mat, &bs)); 32789566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(mat, &m, &n)); 32799566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetRange(mat->rmap, &rs, NULL)); 32809566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetRange(mat->cmap, &cs, &ce)); 32819371c9d4SSatish Balay mbs = m / bs; 32829371c9d4SSatish Balay nbs = n / bs; 3283b51a4376SLisandro Dalcin 3284b51a4376SLisandro Dalcin /* read in row lengths and build row indices */ 32859566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m + 1, &rowidxs)); 32869566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryReadAll(viewer, rowidxs + 1, m, PETSC_DECIDE, M, PETSC_INT)); 32879371c9d4SSatish Balay rowidxs[0] = 0; 32889371c9d4SSatish Balay for (i = 0; i < m; i++) rowidxs[i + 1] += rowidxs[i]; 3289462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&rowidxs[m], &sum, 1, MPIU_INT, MPI_SUM, PetscObjectComm((PetscObject)viewer))); 32905f80ce2aSJacob Faibussowitsch PetscCheck(sum == nz, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Inconsistent matrix data in file: nonzeros = %" PetscInt_FMT ", sum-row-lengths = %" PetscInt_FMT, nz, sum); 3291b51a4376SLisandro Dalcin 3292b51a4376SLisandro Dalcin /* read in column indices and matrix values */ 32939566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(rowidxs[m], &colidxs, rowidxs[m], &matvals)); 32949566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryReadAll(viewer, colidxs, rowidxs[m], PETSC_DETERMINE, PETSC_DETERMINE, PETSC_INT)); 32959566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryReadAll(viewer, matvals, rowidxs[m], PETSC_DETERMINE, PETSC_DETERMINE, PETSC_SCALAR)); 3296b51a4376SLisandro Dalcin 3297b51a4376SLisandro Dalcin { /* preallocate matrix storage */ 3298b51a4376SLisandro Dalcin PetscBT bt; /* helper bit set to count diagonal nonzeros */ 3299b51a4376SLisandro Dalcin PetscHSetI ht; /* helper hash set to count off-diagonal nonzeros */ 3300618cc2edSLisandro Dalcin PetscBool sbaij, done; 3301b51a4376SLisandro Dalcin PetscInt *d_nnz, *o_nnz; 3302b51a4376SLisandro Dalcin 33039566063dSJacob Faibussowitsch PetscCall(PetscBTCreate(nbs, &bt)); 33049566063dSJacob Faibussowitsch PetscCall(PetscHSetICreate(&ht)); 33059566063dSJacob Faibussowitsch PetscCall(PetscCalloc2(mbs, &d_nnz, mbs, &o_nnz)); 33069566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)mat, MATMPISBAIJ, &sbaij)); 3307b51a4376SLisandro Dalcin for (i = 0; i < mbs; i++) { 33089566063dSJacob Faibussowitsch PetscCall(PetscBTMemzero(nbs, bt)); 33099566063dSJacob Faibussowitsch PetscCall(PetscHSetIClear(ht)); 3310618cc2edSLisandro Dalcin for (k = 0; k < bs; k++) { 3311618cc2edSLisandro Dalcin PetscInt row = bs * i + k; 3312618cc2edSLisandro Dalcin for (j = rowidxs[row]; j < rowidxs[row + 1]; j++) { 3313618cc2edSLisandro Dalcin PetscInt col = colidxs[j]; 3314618cc2edSLisandro Dalcin if (!sbaij || col >= row) { 3315618cc2edSLisandro Dalcin if (col >= cs && col < ce) { 3316618cc2edSLisandro Dalcin if (!PetscBTLookupSet(bt, (col - cs) / bs)) d_nnz[i]++; 3317b51a4376SLisandro Dalcin } else { 33189566063dSJacob Faibussowitsch PetscCall(PetscHSetIQueryAdd(ht, col / bs, &done)); 3319b51a4376SLisandro Dalcin if (done) o_nnz[i]++; 3320b51a4376SLisandro Dalcin } 3321b51a4376SLisandro Dalcin } 3322618cc2edSLisandro Dalcin } 3323618cc2edSLisandro Dalcin } 3324618cc2edSLisandro Dalcin } 33259566063dSJacob Faibussowitsch PetscCall(PetscBTDestroy(&bt)); 33269566063dSJacob Faibussowitsch PetscCall(PetscHSetIDestroy(&ht)); 33279566063dSJacob Faibussowitsch PetscCall(MatMPIBAIJSetPreallocation(mat, bs, 0, d_nnz, 0, o_nnz)); 33289566063dSJacob Faibussowitsch PetscCall(MatMPISBAIJSetPreallocation(mat, bs, 0, d_nnz, 0, o_nnz)); 33299566063dSJacob Faibussowitsch PetscCall(PetscFree2(d_nnz, o_nnz)); 3330b51a4376SLisandro Dalcin } 3331b51a4376SLisandro Dalcin 3332b51a4376SLisandro Dalcin /* store matrix values */ 3333b51a4376SLisandro Dalcin for (i = 0; i < m; i++) { 3334b51a4376SLisandro Dalcin PetscInt row = rs + i, s = rowidxs[i], e = rowidxs[i + 1]; 33359927e4dfSBarry Smith PetscUseTypeMethod(mat, setvalues, 1, &row, e - s, colidxs + s, matvals + s, INSERT_VALUES); 3336b51a4376SLisandro Dalcin } 3337b51a4376SLisandro Dalcin 33389566063dSJacob Faibussowitsch PetscCall(PetscFree(rowidxs)); 33399566063dSJacob Faibussowitsch PetscCall(PetscFree2(colidxs, matvals)); 33409566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(mat, MAT_FINAL_ASSEMBLY)); 33419566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(mat, MAT_FINAL_ASSEMBLY)); 33423ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3343b51a4376SLisandro Dalcin } 3344b51a4376SLisandro Dalcin 3345d71ae5a4SJacob Faibussowitsch PetscErrorCode MatLoad_MPIBAIJ(Mat mat, PetscViewer viewer) 3346d71ae5a4SJacob Faibussowitsch { 33477f489da9SVaclav Hapla PetscBool isbinary; 33484683f7a4SShri Abhyankar 33494683f7a4SShri Abhyankar PetscFunctionBegin; 33509566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary)); 33515f80ce2aSJacob Faibussowitsch PetscCheck(isbinary, PetscObjectComm((PetscObject)viewer), PETSC_ERR_SUP, "Viewer type %s not yet supported for reading %s matrices", ((PetscObject)viewer)->type_name, ((PetscObject)mat)->type_name); 33529566063dSJacob Faibussowitsch PetscCall(MatLoad_MPIBAIJ_Binary(mat, viewer)); 33533ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 33544683f7a4SShri Abhyankar } 33554683f7a4SShri Abhyankar 3356133cdb44SSatish Balay /*@ 335711a5261eSBarry Smith MatMPIBAIJSetHashTableFactor - Sets the factor required to compute the size of the matrices hash table 3358133cdb44SSatish Balay 3359133cdb44SSatish Balay Input Parameters: 3360a2b725a8SWilliam Gropp + mat - the matrix 3361a2b725a8SWilliam Gropp - fact - factor 3362133cdb44SSatish Balay 336311a5261eSBarry Smith Options Database Key: 336411a5261eSBarry Smith . -mat_use_hash_table <fact> - provide the factor 3365fee21e36SBarry Smith 33668c890885SBarry Smith Level: advanced 33678c890885SBarry Smith 336867be906fSBarry Smith .seealso: `Mat`, `MATMPIBAIJ`, `MatSetOption()` 3369133cdb44SSatish Balay @*/ 3370d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIBAIJSetHashTableFactor(Mat mat, PetscReal fact) 3371d71ae5a4SJacob Faibussowitsch { 33725bf65638SKris Buschelman PetscFunctionBegin; 3373cac4c232SBarry Smith PetscTryMethod(mat, "MatSetHashTableFactor_C", (Mat, PetscReal), (mat, fact)); 33743ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 33755bf65638SKris Buschelman } 33765bf65638SKris Buschelman 3377d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetHashTableFactor_MPIBAIJ(Mat mat, PetscReal fact) 3378d71ae5a4SJacob Faibussowitsch { 337925fdafccSSatish Balay Mat_MPIBAIJ *baij; 3380133cdb44SSatish Balay 3381133cdb44SSatish Balay PetscFunctionBegin; 3382133cdb44SSatish Balay baij = (Mat_MPIBAIJ *)mat->data; 3383133cdb44SSatish Balay baij->ht_fact = fact; 33843ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3385133cdb44SSatish Balay } 3386f2a5309cSSatish Balay 3387d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIBAIJGetSeqBAIJ(Mat A, Mat *Ad, Mat *Ao, const PetscInt *colmap[]) 3388d71ae5a4SJacob Faibussowitsch { 3389f2a5309cSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 3390ab4d48faSStefano Zampini PetscBool flg; 33915fd66863SKarl Rupp 3392f2a5309cSSatish Balay PetscFunctionBegin; 33939566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)A, MATMPIBAIJ, &flg)); 33945f80ce2aSJacob Faibussowitsch PetscCheck(flg, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "This function requires a MATMPIBAIJ matrix as input"); 339521e72a00SBarry Smith if (Ad) *Ad = a->A; 339621e72a00SBarry Smith if (Ao) *Ao = a->B; 339721e72a00SBarry Smith if (colmap) *colmap = a->garray; 33983ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3399f2a5309cSSatish Balay } 340085535b8eSBarry Smith 340185535b8eSBarry Smith /* 340285535b8eSBarry Smith Special version for direct calls from Fortran (to eliminate two function call overheads 340385535b8eSBarry Smith */ 340485535b8eSBarry Smith #if defined(PETSC_HAVE_FORTRAN_CAPS) 340585535b8eSBarry Smith #define matmpibaijsetvaluesblocked_ MATMPIBAIJSETVALUESBLOCKED 340685535b8eSBarry Smith #elif !defined(PETSC_HAVE_FORTRAN_UNDERSCORE) 340785535b8eSBarry Smith #define matmpibaijsetvaluesblocked_ matmpibaijsetvaluesblocked 340885535b8eSBarry Smith #endif 340985535b8eSBarry Smith 34102920cce0SJacob Faibussowitsch // PetscClangLinter pragma disable: -fdoc-synopsis-matching-symbol-name 341185535b8eSBarry Smith /*@C 341211a5261eSBarry Smith MatMPIBAIJSetValuesBlocked - Direct Fortran call to replace call to `MatSetValuesBlocked()` 341385535b8eSBarry Smith 3414c3339decSBarry Smith Collective 341585535b8eSBarry Smith 341685535b8eSBarry Smith Input Parameters: 3417fe59aa6dSJacob Faibussowitsch + matin - the matrix 341885535b8eSBarry Smith . min - number of input rows 341985535b8eSBarry Smith . im - input rows 342085535b8eSBarry Smith . nin - number of input columns 342185535b8eSBarry Smith . in - input columns 342285535b8eSBarry Smith . v - numerical values input 342311a5261eSBarry Smith - addvin - `INSERT_VALUES` or `ADD_VALUES` 342485535b8eSBarry Smith 342520f4b53cSBarry Smith Level: advanced 342620f4b53cSBarry Smith 3427fe59aa6dSJacob Faibussowitsch Developer Notes: 342811a5261eSBarry Smith This has a complete copy of `MatSetValuesBlocked_MPIBAIJ()` which is terrible code un-reuse. 342985535b8eSBarry Smith 343067be906fSBarry Smith .seealso: `Mat`, `MatSetValuesBlocked()` 343185535b8eSBarry Smith @*/ 343266976f2fSJacob Faibussowitsch PETSC_EXTERN PetscErrorCode matmpibaijsetvaluesblocked_(Mat *matin, PetscInt *min, const PetscInt im[], PetscInt *nin, const PetscInt in[], const MatScalar v[], InsertMode *addvin) 3433d71ae5a4SJacob Faibussowitsch { 343485535b8eSBarry Smith /* convert input arguments to C version */ 343585535b8eSBarry Smith Mat mat = *matin; 343685535b8eSBarry Smith PetscInt m = *min, n = *nin; 343785535b8eSBarry Smith InsertMode addv = *addvin; 343885535b8eSBarry Smith 343985535b8eSBarry Smith Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 344085535b8eSBarry Smith const MatScalar *value; 344185535b8eSBarry Smith MatScalar *barray = baij->barray; 3442ace3abfcSBarry Smith PetscBool roworiented = baij->roworiented; 344385535b8eSBarry Smith PetscInt i, j, ii, jj, row, col, rstart = baij->rstartbs; 344485535b8eSBarry Smith PetscInt rend = baij->rendbs, cstart = baij->cstartbs, stepval; 3445d0f46423SBarry Smith PetscInt cend = baij->cendbs, bs = mat->rmap->bs, bs2 = baij->bs2; 344685535b8eSBarry Smith 344785535b8eSBarry Smith PetscFunctionBegin; 344885535b8eSBarry Smith /* tasks normally handled by MatSetValuesBlocked() */ 344926fbe8dcSKarl Rupp if (mat->insertmode == NOT_SET_VALUES) mat->insertmode = addv; 34505f80ce2aSJacob Faibussowitsch else PetscCheck(mat->insertmode == addv, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Cannot mix add values and insert values"); 34515f80ce2aSJacob Faibussowitsch PetscCheck(!mat->factortype, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Not for factored matrix"); 345285535b8eSBarry Smith if (mat->assembled) { 345385535b8eSBarry Smith mat->was_assembled = PETSC_TRUE; 345485535b8eSBarry Smith mat->assembled = PETSC_FALSE; 345585535b8eSBarry Smith } 34569566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(MAT_SetValues, mat, 0, 0, 0)); 345785535b8eSBarry Smith 345885535b8eSBarry Smith if (!barray) { 34599566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(bs2, &barray)); 346085535b8eSBarry Smith baij->barray = barray; 346185535b8eSBarry Smith } 346285535b8eSBarry Smith 346326fbe8dcSKarl Rupp if (roworiented) stepval = (n - 1) * bs; 346426fbe8dcSKarl Rupp else stepval = (m - 1) * bs; 346526fbe8dcSKarl Rupp 346685535b8eSBarry Smith for (i = 0; i < m; i++) { 346785535b8eSBarry Smith if (im[i] < 0) continue; 34686bdcaf15SBarry Smith PetscCheck(im[i] < baij->Mbs, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large, row %" PetscInt_FMT " max %" PetscInt_FMT, im[i], baij->Mbs - 1); 346985535b8eSBarry Smith if (im[i] >= rstart && im[i] < rend) { 347085535b8eSBarry Smith row = im[i] - rstart; 347185535b8eSBarry Smith for (j = 0; j < n; j++) { 347285535b8eSBarry Smith /* If NumCol = 1 then a copy is not required */ 347385535b8eSBarry Smith if ((roworiented) && (n == 1)) { 347485535b8eSBarry Smith barray = (MatScalar *)v + i * bs2; 347585535b8eSBarry Smith } else if ((!roworiented) && (m == 1)) { 347685535b8eSBarry Smith barray = (MatScalar *)v + j * bs2; 347785535b8eSBarry Smith } else { /* Here a copy is required */ 347885535b8eSBarry Smith if (roworiented) { 347985535b8eSBarry Smith value = v + i * (stepval + bs) * bs + j * bs; 348085535b8eSBarry Smith } else { 348185535b8eSBarry Smith value = v + j * (stepval + bs) * bs + i * bs; 348285535b8eSBarry Smith } 348385535b8eSBarry Smith for (ii = 0; ii < bs; ii++, value += stepval) { 3484ad540459SPierre Jolivet for (jj = 0; jj < bs; jj++) *barray++ = *value++; 348585535b8eSBarry Smith } 348685535b8eSBarry Smith barray -= bs2; 348785535b8eSBarry Smith } 348885535b8eSBarry Smith 348985535b8eSBarry Smith if (in[j] >= cstart && in[j] < cend) { 349085535b8eSBarry Smith col = in[j] - cstart; 34919566063dSJacob Faibussowitsch PetscCall(MatSetValuesBlocked_SeqBAIJ_Inlined(baij->A, row, col, barray, addv, im[i], in[j])); 3492f7d195e4SLawrence Mitchell } else if (in[j] < 0) { 3493f7d195e4SLawrence Mitchell continue; 3494f7d195e4SLawrence Mitchell } else { 3495f7d195e4SLawrence Mitchell PetscCheck(in[j] < baij->Nbs, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large, col %" PetscInt_FMT " max %" PetscInt_FMT, in[j], baij->Nbs - 1); 349685535b8eSBarry Smith if (mat->was_assembled) { 349748a46eb9SPierre Jolivet if (!baij->colmap) PetscCall(MatCreateColmap_MPIBAIJ_Private(mat)); 349885535b8eSBarry Smith 349985535b8eSBarry Smith #if defined(PETSC_USE_DEBUG) 350085535b8eSBarry Smith #if defined(PETSC_USE_CTABLE) 35019371c9d4SSatish Balay { 35029371c9d4SSatish Balay PetscInt data; 3503eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIGetWithDefault(baij->colmap, in[j] + 1, 0, &data)); 350408401ef6SPierre Jolivet PetscCheck((data - 1) % bs == 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Incorrect colmap"); 350585535b8eSBarry Smith } 350685535b8eSBarry Smith #else 350708401ef6SPierre Jolivet PetscCheck((baij->colmap[in[j]] - 1) % bs == 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Incorrect colmap"); 350885535b8eSBarry Smith #endif 350985535b8eSBarry Smith #endif 351085535b8eSBarry Smith #if defined(PETSC_USE_CTABLE) 3511eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIGetWithDefault(baij->colmap, in[j] + 1, 0, &col)); 351285535b8eSBarry Smith col = (col - 1) / bs; 351385535b8eSBarry Smith #else 351485535b8eSBarry Smith col = (baij->colmap[in[j]] - 1) / bs; 351585535b8eSBarry Smith #endif 3516f4f49eeaSPierre Jolivet if (col < 0 && !((Mat_SeqBAIJ *)baij->A->data)->nonew) { 35179566063dSJacob Faibussowitsch PetscCall(MatDisAssemble_MPIBAIJ(mat)); 351885535b8eSBarry Smith col = in[j]; 351985535b8eSBarry Smith } 352026fbe8dcSKarl Rupp } else col = in[j]; 35219566063dSJacob Faibussowitsch PetscCall(MatSetValuesBlocked_SeqBAIJ_Inlined(baij->B, row, col, barray, addv, im[i], in[j])); 352285535b8eSBarry Smith } 352385535b8eSBarry Smith } 352485535b8eSBarry Smith } else { 352585535b8eSBarry Smith if (!baij->donotstash) { 352685535b8eSBarry Smith if (roworiented) { 35279566063dSJacob Faibussowitsch PetscCall(MatStashValuesRowBlocked_Private(&mat->bstash, im[i], n, in, v, m, n, i)); 352885535b8eSBarry Smith } else { 35299566063dSJacob Faibussowitsch PetscCall(MatStashValuesColBlocked_Private(&mat->bstash, im[i], n, in, v, m, n, i)); 353085535b8eSBarry Smith } 353185535b8eSBarry Smith } 353285535b8eSBarry Smith } 353385535b8eSBarry Smith } 353485535b8eSBarry Smith 353585535b8eSBarry Smith /* task normally handled by MatSetValuesBlocked() */ 35369566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(MAT_SetValues, mat, 0, 0, 0)); 35373ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 353885535b8eSBarry Smith } 3539dfb205c3SBarry Smith 3540dfb205c3SBarry Smith /*@ 3541d8a51d2aSBarry Smith MatCreateMPIBAIJWithArrays - creates a `MATMPIBAIJ` matrix using arrays that contain in standard block CSR format for the local rows. 3542dfb205c3SBarry Smith 3543d083f849SBarry Smith Collective 3544dfb205c3SBarry Smith 3545dfb205c3SBarry Smith Input Parameters: 3546dfb205c3SBarry Smith + comm - MPI communicator 3547dfb205c3SBarry Smith . bs - the block size, only a block size of 1 is supported 354811a5261eSBarry Smith . m - number of local rows (Cannot be `PETSC_DECIDE`) 3549dfb205c3SBarry Smith . n - This value should be the same as the local size used in creating the 3550d8a51d2aSBarry Smith x vector for the matrix-vector product $ y = Ax $. (or `PETSC_DECIDE` to have 3551d8a51d2aSBarry Smith calculated if `N` is given) For square matrices `n` is almost always `m`. 3552d8a51d2aSBarry Smith . M - number of global rows (or `PETSC_DETERMINE` to have calculated if `m` is given) 3553d8a51d2aSBarry Smith . N - number of global columns (or `PETSC_DETERMINE` to have calculated if `n` is given) 3554483a2f95SBarry Smith . i - row indices; that is i[0] = 0, i[row] = i[row-1] + number of block elements in that rowth block row of the matrix 3555dfb205c3SBarry Smith . j - column indices 3556dfb205c3SBarry Smith - a - matrix values 3557dfb205c3SBarry Smith 3558dfb205c3SBarry Smith Output Parameter: 3559dfb205c3SBarry Smith . mat - the matrix 3560dfb205c3SBarry Smith 3561dfb205c3SBarry Smith Level: intermediate 3562dfb205c3SBarry Smith 3563dfb205c3SBarry Smith Notes: 356467be906fSBarry Smith The `i`, `j`, and `a` arrays ARE copied by this routine into the internal format used by PETSc; 3565dfb205c3SBarry Smith thus you CANNOT change the matrix entries by changing the values of a[] after you have 356611a5261eSBarry Smith called this routine. Use `MatCreateMPIAIJWithSplitArrays()` to avoid needing to copy the arrays. 3567dfb205c3SBarry Smith 35683adadaf3SJed Brown The order of the entries in values is the same as the block compressed sparse row storage format; that is, it is 35693adadaf3SJed Brown the same as a three dimensional array in Fortran values(bs,bs,nnz) that contains the first column of the first 35703adadaf3SJed Brown block, followed by the second column of the first block etc etc. That is, the blocks are contiguous in memory 35713adadaf3SJed Brown with column-major ordering within blocks. 35723adadaf3SJed Brown 3573d8a51d2aSBarry Smith The `i` and `j` indices are 0 based, and `i` indices are indices corresponding to the local `j` array. 3574dfb205c3SBarry Smith 357567be906fSBarry Smith .seealso: `Mat`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`, 35767d2c085eSPierre Jolivet `MATMPIAIJ`, `MatCreateAIJ()`, `MatCreateMPIAIJWithSplitArrays()` 3577dfb205c3SBarry Smith @*/ 3578d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIBAIJWithArrays(MPI_Comm comm, PetscInt bs, PetscInt m, PetscInt n, PetscInt M, PetscInt N, const PetscInt i[], const PetscInt j[], const PetscScalar a[], Mat *mat) 3579d71ae5a4SJacob Faibussowitsch { 3580dfb205c3SBarry Smith PetscFunctionBegin; 35815f80ce2aSJacob Faibussowitsch PetscCheck(!i[0], PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "i (row indices) must start with 0"); 35825f80ce2aSJacob Faibussowitsch PetscCheck(m >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "local number of rows (m) cannot be PETSC_DECIDE, or negative"); 35839566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, mat)); 35849566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*mat, m, n, M, N)); 35859566063dSJacob Faibussowitsch PetscCall(MatSetType(*mat, MATMPIBAIJ)); 35869566063dSJacob Faibussowitsch PetscCall(MatSetBlockSize(*mat, bs)); 35879566063dSJacob Faibussowitsch PetscCall(MatSetUp(*mat)); 35889566063dSJacob Faibussowitsch PetscCall(MatSetOption(*mat, MAT_ROW_ORIENTED, PETSC_FALSE)); 35899566063dSJacob Faibussowitsch PetscCall(MatMPIBAIJSetPreallocationCSR(*mat, bs, i, j, a)); 35909566063dSJacob Faibussowitsch PetscCall(MatSetOption(*mat, MAT_ROW_ORIENTED, PETSC_TRUE)); 35913ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3592dfb205c3SBarry Smith } 3593e561ad89SHong Zhang 3594d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIMatConcatenateSeqMat_MPIBAIJ(MPI_Comm comm, Mat inmat, PetscInt n, MatReuse scall, Mat *outmat) 3595d71ae5a4SJacob Faibussowitsch { 3596bd153df0SHong Zhang PetscInt m, N, i, rstart, nnz, Ii, bs, cbs; 3597bd153df0SHong Zhang PetscInt *indx; 3598bd153df0SHong Zhang PetscScalar *values; 3599e561ad89SHong Zhang 3600e561ad89SHong Zhang PetscFunctionBegin; 36019566063dSJacob Faibussowitsch PetscCall(MatGetSize(inmat, &m, &N)); 3602bd153df0SHong Zhang if (scall == MAT_INITIAL_MATRIX) { /* symbolic phase */ 3603bd153df0SHong Zhang Mat_SeqBAIJ *a = (Mat_SeqBAIJ *)inmat->data; 36042c6ba4edSHong Zhang PetscInt *dnz, *onz, mbs, Nbs, nbs; 3605bd153df0SHong Zhang PetscInt *bindx, rmax = a->rmax, j; 360677f764caSHong Zhang PetscMPIInt rank, size; 3607e561ad89SHong Zhang 36089566063dSJacob Faibussowitsch PetscCall(MatGetBlockSizes(inmat, &bs, &cbs)); 36099371c9d4SSatish Balay mbs = m / bs; 36109371c9d4SSatish Balay Nbs = N / cbs; 361148a46eb9SPierre Jolivet if (n == PETSC_DECIDE) PetscCall(PetscSplitOwnershipBlock(comm, cbs, &n, &N)); 3612da91a574SPierre Jolivet nbs = n / cbs; 3613e561ad89SHong Zhang 36149566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(rmax, &bindx)); 3615d0609cedSBarry Smith MatPreallocateBegin(comm, mbs, nbs, dnz, onz); /* inline function, output __end and __rstart are used below */ 361677f764caSHong Zhang 36179566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 3618*badd099fSHan Liu PetscCallMPI(MPI_Comm_size(comm, &size)); 361977f764caSHong Zhang if (rank == size - 1) { 362077f764caSHong Zhang /* Check sum(nbs) = Nbs */ 36215f80ce2aSJacob Faibussowitsch PetscCheck(__end == Nbs, PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "Sum of local block columns %" PetscInt_FMT " != global block columns %" PetscInt_FMT, __end, Nbs); 362277f764caSHong Zhang } 362377f764caSHong Zhang 3624d0609cedSBarry Smith rstart = __rstart; /* block rstart of *outmat; see inline function MatPreallocateBegin */ 3625bd153df0SHong Zhang for (i = 0; i < mbs; i++) { 36269566063dSJacob Faibussowitsch PetscCall(MatGetRow_SeqBAIJ(inmat, i * bs, &nnz, &indx, NULL)); /* non-blocked nnz and indx */ 3627647a6520SHong Zhang nnz = nnz / bs; 3628647a6520SHong Zhang for (j = 0; j < nnz; j++) bindx[j] = indx[j * bs] / bs; 36299566063dSJacob Faibussowitsch PetscCall(MatPreallocateSet(i + rstart, nnz, bindx, dnz, onz)); 36309566063dSJacob Faibussowitsch PetscCall(MatRestoreRow_SeqBAIJ(inmat, i * bs, &nnz, &indx, NULL)); 3631e561ad89SHong Zhang } 36329566063dSJacob Faibussowitsch PetscCall(PetscFree(bindx)); 3633e561ad89SHong Zhang 36349566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, outmat)); 36359566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*outmat, m, n, PETSC_DETERMINE, PETSC_DETERMINE)); 36369566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizes(*outmat, bs, cbs)); 36379566063dSJacob Faibussowitsch PetscCall(MatSetType(*outmat, MATBAIJ)); 36389566063dSJacob Faibussowitsch PetscCall(MatSeqBAIJSetPreallocation(*outmat, bs, 0, dnz)); 36399566063dSJacob Faibussowitsch PetscCall(MatMPIBAIJSetPreallocation(*outmat, bs, 0, dnz, 0, onz)); 3640d0609cedSBarry Smith MatPreallocateEnd(dnz, onz); 36419566063dSJacob Faibussowitsch PetscCall(MatSetOption(*outmat, MAT_NO_OFF_PROC_ENTRIES, PETSC_TRUE)); 3642e561ad89SHong Zhang } 3643e561ad89SHong Zhang 3644bd153df0SHong Zhang /* numeric phase */ 36459566063dSJacob Faibussowitsch PetscCall(MatGetBlockSizes(inmat, &bs, &cbs)); 36469566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(*outmat, &rstart, NULL)); 3647e561ad89SHong Zhang 3648e561ad89SHong Zhang for (i = 0; i < m; i++) { 36499566063dSJacob Faibussowitsch PetscCall(MatGetRow_SeqBAIJ(inmat, i, &nnz, &indx, &values)); 3650e561ad89SHong Zhang Ii = i + rstart; 36519566063dSJacob Faibussowitsch PetscCall(MatSetValues(*outmat, 1, &Ii, nnz, indx, values, INSERT_VALUES)); 36529566063dSJacob Faibussowitsch PetscCall(MatRestoreRow_SeqBAIJ(inmat, i, &nnz, &indx, &values)); 3653e561ad89SHong Zhang } 36549566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(*outmat, MAT_FINAL_ASSEMBLY)); 36559566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(*outmat, MAT_FINAL_ASSEMBLY)); 36563ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3657e561ad89SHong Zhang } 3658