xref: /petsc/src/mat/impls/baij/mpi/mpibaij.c (revision bccb993214ee4cc0008fb48715c77d528cac756e)
1be1d678aSKris Buschelman #define PETSCMAT_DLL
279bdfe76SSatish Balay 
37c4f633dSBarry Smith #include "../src/mat/impls/baij/mpi/mpibaij.h"   /*I  "petscmat.h"  I*/
4f3da1532SBarry Smith #include "petscblaslapack.h"
579bdfe76SSatish Balay 
6dfbe8321SBarry Smith EXTERN PetscErrorCode MatSetUpMultiply_MPIBAIJ(Mat);
7dfbe8321SBarry Smith EXTERN PetscErrorCode DisAssemble_MPIBAIJ(Mat);
8b24ad042SBarry Smith EXTERN PetscErrorCode MatIncreaseOverlap_MPIBAIJ(Mat,PetscInt,IS[],PetscInt);
9b24ad042SBarry Smith EXTERN PetscErrorCode MatGetSubMatrices_MPIBAIJ(Mat,PetscInt,const IS[],const IS[],MatReuse,Mat *[]);
10b24ad042SBarry Smith EXTERN PetscErrorCode MatGetValues_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt [],PetscScalar []);
11b24ad042SBarry Smith EXTERN PetscErrorCode MatSetValues_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt [],const PetscScalar [],InsertMode);
12b24ad042SBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode);
13b24ad042SBarry Smith EXTERN PetscErrorCode MatGetRow_SeqBAIJ(Mat,PetscInt,PetscInt*,PetscInt*[],PetscScalar*[]);
14b24ad042SBarry Smith EXTERN PetscErrorCode MatRestoreRow_SeqBAIJ(Mat,PetscInt,PetscInt*,PetscInt*[],PetscScalar*[]);
15f4df32b1SMatthew Knepley EXTERN PetscErrorCode MatZeroRows_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscScalar);
1693fea6afSBarry Smith 
174a2ae208SSatish Balay #undef __FUNCT__
18985db425SBarry Smith #define __FUNCT__ "MatGetRowMaxAbs_MPIBAIJ"
19985db425SBarry Smith PetscErrorCode MatGetRowMaxAbs_MPIBAIJ(Mat A,Vec v,PetscInt idx[])
207843d17aSBarry Smith {
217843d17aSBarry Smith   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)A->data;
22dfbe8321SBarry Smith   PetscErrorCode ierr;
23985db425SBarry Smith   PetscInt       i,*idxb = 0;
2487828ca2SBarry Smith   PetscScalar    *va,*vb;
257843d17aSBarry Smith   Vec            vtmp;
267843d17aSBarry Smith 
277843d17aSBarry Smith   PetscFunctionBegin;
28985db425SBarry Smith   ierr = MatGetRowMaxAbs(a->A,v,idx);CHKERRQ(ierr);
291ebc52fbSHong Zhang   ierr = VecGetArray(v,&va);CHKERRQ(ierr);
30985db425SBarry Smith   if (idx) {
31192daf7cSBarry Smith     for (i=0; i<A->rmap->n; i++) {if (PetscAbsScalar(va[i])) idx[i] += A->cmap->rstart;}
32985db425SBarry Smith   }
337843d17aSBarry Smith 
34d0f46423SBarry Smith   ierr = VecCreateSeq(PETSC_COMM_SELF,A->rmap->n,&vtmp);CHKERRQ(ierr);
35d0f46423SBarry Smith   if (idx) {ierr = PetscMalloc(A->rmap->n*sizeof(PetscInt),&idxb);CHKERRQ(ierr);}
36985db425SBarry Smith   ierr = MatGetRowMaxAbs(a->B,vtmp,idxb);CHKERRQ(ierr);
371ebc52fbSHong Zhang   ierr = VecGetArray(vtmp,&vb);CHKERRQ(ierr);
387843d17aSBarry Smith 
39d0f46423SBarry Smith   for (i=0; i<A->rmap->n; i++){
40d0f46423SBarry Smith     if (PetscAbsScalar(va[i]) < PetscAbsScalar(vb[i])) {va[i] = vb[i]; if (idx) idx[i] = A->cmap->bs*a->garray[idxb[i]/A->cmap->bs] + (idxb[i] % A->cmap->bs);}
417843d17aSBarry Smith   }
427843d17aSBarry Smith 
431ebc52fbSHong Zhang   ierr = VecRestoreArray(v,&va);CHKERRQ(ierr);
441ebc52fbSHong Zhang   ierr = VecRestoreArray(vtmp,&vb);CHKERRQ(ierr);
45985db425SBarry Smith   if (idxb) {ierr = PetscFree(idxb);CHKERRQ(ierr);}
46ac355199SBarry Smith   ierr = VecDestroy(vtmp);CHKERRQ(ierr);
477843d17aSBarry Smith   PetscFunctionReturn(0);
487843d17aSBarry Smith }
497843d17aSBarry Smith 
507fc3c18eSBarry Smith EXTERN_C_BEGIN
514a2ae208SSatish Balay #undef __FUNCT__
524a2ae208SSatish Balay #define __FUNCT__ "MatStoreValues_MPIBAIJ"
53be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatStoreValues_MPIBAIJ(Mat mat)
547fc3c18eSBarry Smith {
557fc3c18eSBarry Smith   Mat_MPIBAIJ    *aij = (Mat_MPIBAIJ *)mat->data;
56dfbe8321SBarry Smith   PetscErrorCode ierr;
577fc3c18eSBarry Smith 
587fc3c18eSBarry Smith   PetscFunctionBegin;
597fc3c18eSBarry Smith   ierr = MatStoreValues(aij->A);CHKERRQ(ierr);
607fc3c18eSBarry Smith   ierr = MatStoreValues(aij->B);CHKERRQ(ierr);
617fc3c18eSBarry Smith   PetscFunctionReturn(0);
627fc3c18eSBarry Smith }
637fc3c18eSBarry Smith EXTERN_C_END
647fc3c18eSBarry Smith 
657fc3c18eSBarry Smith EXTERN_C_BEGIN
664a2ae208SSatish Balay #undef __FUNCT__
674a2ae208SSatish Balay #define __FUNCT__ "MatRetrieveValues_MPIBAIJ"
68be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatRetrieveValues_MPIBAIJ(Mat mat)
697fc3c18eSBarry Smith {
707fc3c18eSBarry Smith   Mat_MPIBAIJ    *aij = (Mat_MPIBAIJ *)mat->data;
71dfbe8321SBarry Smith   PetscErrorCode ierr;
727fc3c18eSBarry Smith 
737fc3c18eSBarry Smith   PetscFunctionBegin;
747fc3c18eSBarry Smith   ierr = MatRetrieveValues(aij->A);CHKERRQ(ierr);
757fc3c18eSBarry Smith   ierr = MatRetrieveValues(aij->B);CHKERRQ(ierr);
767fc3c18eSBarry Smith   PetscFunctionReturn(0);
777fc3c18eSBarry Smith }
787fc3c18eSBarry Smith EXTERN_C_END
797fc3c18eSBarry Smith 
80537820f0SBarry Smith /*
81537820f0SBarry Smith      Local utility routine that creates a mapping from the global column
8257b952d6SSatish Balay    number to the local number in the off-diagonal part of the local
83e06f6af7SJed Brown    storage of the matrix.  This is done in a non scalable way since the
8457b952d6SSatish Balay    length of colmap equals the global matrix length.
8557b952d6SSatish Balay */
864a2ae208SSatish Balay #undef __FUNCT__
874a2ae208SSatish Balay #define __FUNCT__ "CreateColmap_MPIBAIJ_Private"
88dfbe8321SBarry Smith PetscErrorCode CreateColmap_MPIBAIJ_Private(Mat mat)
8957b952d6SSatish Balay {
9057b952d6SSatish Balay   Mat_MPIBAIJ    *baij = (Mat_MPIBAIJ*)mat->data;
9157b952d6SSatish Balay   Mat_SeqBAIJ    *B = (Mat_SeqBAIJ*)baij->B->data;
926849ba73SBarry Smith   PetscErrorCode ierr;
93d0f46423SBarry Smith   PetscInt       nbs = B->nbs,i,bs=mat->rmap->bs;
9457b952d6SSatish Balay 
95d64ed03dSBarry Smith   PetscFunctionBegin;
96aa482453SBarry Smith #if defined (PETSC_USE_CTABLE)
97f14a1c24SBarry Smith   ierr = PetscTableCreate(baij->nbs,&baij->colmap);CHKERRQ(ierr);
9848e59246SSatish Balay   for (i=0; i<nbs; i++){
990f5bd95cSBarry Smith     ierr = PetscTableAdd(baij->colmap,baij->garray[i]+1,i*bs+1);CHKERRQ(ierr);
10048e59246SSatish Balay   }
10148e59246SSatish Balay #else
102b24ad042SBarry Smith   ierr = PetscMalloc((baij->Nbs+1)*sizeof(PetscInt),&baij->colmap);CHKERRQ(ierr);
10352e6d16bSBarry Smith   ierr = PetscLogObjectMemory(mat,baij->Nbs*sizeof(PetscInt));CHKERRQ(ierr);
104b24ad042SBarry Smith   ierr = PetscMemzero(baij->colmap,baij->Nbs*sizeof(PetscInt));CHKERRQ(ierr);
105928fc39bSSatish Balay   for (i=0; i<nbs; i++) baij->colmap[baij->garray[i]] = i*bs+1;
10648e59246SSatish Balay #endif
1073a40ed3dSBarry Smith   PetscFunctionReturn(0);
10857b952d6SSatish Balay }
10957b952d6SSatish Balay 
11080c1aa95SSatish Balay #define CHUNKSIZE  10
11180c1aa95SSatish Balay 
112f5e9677aSSatish Balay #define  MatSetValues_SeqBAIJ_A_Private(row,col,value,addv) \
11380c1aa95SSatish Balay { \
11480c1aa95SSatish Balay  \
11580c1aa95SSatish Balay     brow = row/bs;  \
11680c1aa95SSatish Balay     rp   = aj + ai[brow]; ap = aa + bs2*ai[brow]; \
117ac7a638eSSatish Balay     rmax = aimax[brow]; nrow = ailen[brow]; \
11880c1aa95SSatish Balay       bcol = col/bs; \
11980c1aa95SSatish Balay       ridx = row % bs; cidx = col % bs; \
120ab26458aSBarry Smith       low = 0; high = nrow; \
121ab26458aSBarry Smith       while (high-low > 3) { \
122ab26458aSBarry Smith         t = (low+high)/2; \
123ab26458aSBarry Smith         if (rp[t] > bcol) high = t; \
124ab26458aSBarry Smith         else              low  = t; \
125ab26458aSBarry Smith       } \
126ab26458aSBarry Smith       for (_i=low; _i<high; _i++) { \
12780c1aa95SSatish Balay         if (rp[_i] > bcol) break; \
12880c1aa95SSatish Balay         if (rp[_i] == bcol) { \
12980c1aa95SSatish Balay           bap  = ap +  bs2*_i + bs*cidx + ridx; \
130eada6651SSatish Balay           if (addv == ADD_VALUES) *bap += value;  \
131eada6651SSatish Balay           else                    *bap  = value;  \
132ac7a638eSSatish Balay           goto a_noinsert; \
13380c1aa95SSatish Balay         } \
13480c1aa95SSatish Balay       } \
13589280ab3SLois Curfman McInnes       if (a->nonew == 1) goto a_noinsert; \
136e32f2f54SBarry Smith       if (a->nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \
137421e10b8SBarry Smith       MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,brow,bcol,rmax,aa,ai,aj,rp,ap,aimax,a->nonew,MatScalar); \
13880c1aa95SSatish Balay       N = nrow++ - 1;  \
13980c1aa95SSatish Balay       /* shift up all the later entries in this row */ \
14080c1aa95SSatish Balay       for (ii=N; ii>=_i; ii--) { \
14180c1aa95SSatish Balay         rp[ii+1] = rp[ii]; \
1423eda8832SBarry Smith         ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \
14380c1aa95SSatish Balay       } \
1443eda8832SBarry Smith       if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr); }  \
14580c1aa95SSatish Balay       rp[_i]                      = bcol;  \
14680c1aa95SSatish Balay       ap[bs2*_i + bs*cidx + ridx] = value;  \
147ac7a638eSSatish Balay       a_noinsert:; \
14880c1aa95SSatish Balay     ailen[brow] = nrow; \
14980c1aa95SSatish Balay }
15057b952d6SSatish Balay 
151ac7a638eSSatish Balay #define  MatSetValues_SeqBAIJ_B_Private(row,col,value,addv) \
152ac7a638eSSatish Balay { \
153ac7a638eSSatish Balay     brow = row/bs;  \
154ac7a638eSSatish Balay     rp   = bj + bi[brow]; ap = ba + bs2*bi[brow]; \
155ac7a638eSSatish Balay     rmax = bimax[brow]; nrow = bilen[brow]; \
156ac7a638eSSatish Balay       bcol = col/bs; \
157ac7a638eSSatish Balay       ridx = row % bs; cidx = col % bs; \
158ac7a638eSSatish Balay       low = 0; high = nrow; \
159ac7a638eSSatish Balay       while (high-low > 3) { \
160ac7a638eSSatish Balay         t = (low+high)/2; \
161ac7a638eSSatish Balay         if (rp[t] > bcol) high = t; \
162ac7a638eSSatish Balay         else              low  = t; \
163ac7a638eSSatish Balay       } \
164ac7a638eSSatish Balay       for (_i=low; _i<high; _i++) { \
165ac7a638eSSatish Balay         if (rp[_i] > bcol) break; \
166ac7a638eSSatish Balay         if (rp[_i] == bcol) { \
167ac7a638eSSatish Balay           bap  = ap +  bs2*_i + bs*cidx + ridx; \
168ac7a638eSSatish Balay           if (addv == ADD_VALUES) *bap += value;  \
169ac7a638eSSatish Balay           else                    *bap  = value;  \
170ac7a638eSSatish Balay           goto b_noinsert; \
171ac7a638eSSatish Balay         } \
172ac7a638eSSatish Balay       } \
17389280ab3SLois Curfman McInnes       if (b->nonew == 1) goto b_noinsert; \
174e32f2f54SBarry Smith       if (b->nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \
175421e10b8SBarry Smith       MatSeqXAIJReallocateAIJ(B,b->mbs,bs2,nrow,brow,bcol,rmax,ba,bi,bj,rp,ap,bimax,b->nonew,MatScalar); \
176085a36d4SBarry Smith       CHKMEMQ;\
177ac7a638eSSatish Balay       N = nrow++ - 1;  \
178ac7a638eSSatish Balay       /* shift up all the later entries in this row */ \
179ac7a638eSSatish Balay       for (ii=N; ii>=_i; ii--) { \
180ac7a638eSSatish Balay         rp[ii+1] = rp[ii]; \
1813eda8832SBarry Smith         ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \
182ac7a638eSSatish Balay       } \
1833eda8832SBarry Smith       if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr);}  \
184ac7a638eSSatish Balay       rp[_i]                      = bcol;  \
185ac7a638eSSatish Balay       ap[bs2*_i + bs*cidx + ridx] = value;  \
186ac7a638eSSatish Balay       b_noinsert:; \
187ac7a638eSSatish Balay     bilen[brow] = nrow; \
188ac7a638eSSatish Balay }
189ac7a638eSSatish Balay 
1904a2ae208SSatish Balay #undef __FUNCT__
1914a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_MPIBAIJ"
192b24ad042SBarry Smith PetscErrorCode MatSetValues_MPIBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv)
19357b952d6SSatish Balay {
19457b952d6SSatish Balay   Mat_MPIBAIJ    *baij = (Mat_MPIBAIJ*)mat->data;
19593fea6afSBarry Smith   MatScalar      value;
196273d9f13SBarry Smith   PetscTruth     roworiented = baij->roworiented;
197dfbe8321SBarry Smith   PetscErrorCode ierr;
198b24ad042SBarry Smith   PetscInt       i,j,row,col;
199d0f46423SBarry Smith   PetscInt       rstart_orig=mat->rmap->rstart;
200d0f46423SBarry Smith   PetscInt       rend_orig=mat->rmap->rend,cstart_orig=mat->cmap->rstart;
201d0f46423SBarry Smith   PetscInt       cend_orig=mat->cmap->rend,bs=mat->rmap->bs;
20257b952d6SSatish Balay 
203eada6651SSatish Balay   /* Some Variables required in the macro */
20480c1aa95SSatish Balay   Mat            A = baij->A;
20580c1aa95SSatish Balay   Mat_SeqBAIJ    *a = (Mat_SeqBAIJ*)(A)->data;
206b24ad042SBarry Smith   PetscInt       *aimax=a->imax,*ai=a->i,*ailen=a->ilen,*aj=a->j;
2073eda8832SBarry Smith   MatScalar      *aa=a->a;
208ac7a638eSSatish Balay 
209ac7a638eSSatish Balay   Mat            B = baij->B;
210ac7a638eSSatish Balay   Mat_SeqBAIJ    *b = (Mat_SeqBAIJ*)(B)->data;
211b24ad042SBarry Smith   PetscInt       *bimax=b->imax,*bi=b->i,*bilen=b->ilen,*bj=b->j;
2123eda8832SBarry Smith   MatScalar      *ba=b->a;
213ac7a638eSSatish Balay 
214b24ad042SBarry Smith   PetscInt       *rp,ii,nrow,_i,rmax,N,brow,bcol;
215b24ad042SBarry Smith   PetscInt       low,high,t,ridx,cidx,bs2=a->bs2;
2163eda8832SBarry Smith   MatScalar      *ap,*bap;
21780c1aa95SSatish Balay 
218d64ed03dSBarry Smith   PetscFunctionBegin;
21971fd2e92SBarry Smith   if (v) PetscValidScalarPointer(v,6);
22057b952d6SSatish Balay   for (i=0; i<m; i++) {
2215ef9f2a5SBarry Smith     if (im[i] < 0) continue;
2222515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
223e32f2f54SBarry Smith     if (im[i] >= mat->rmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],mat->rmap->N-1);
224639f9d9dSBarry Smith #endif
22557b952d6SSatish Balay     if (im[i] >= rstart_orig && im[i] < rend_orig) {
22657b952d6SSatish Balay       row = im[i] - rstart_orig;
22757b952d6SSatish Balay       for (j=0; j<n; j++) {
22857b952d6SSatish Balay         if (in[j] >= cstart_orig && in[j] < cend_orig){
22957b952d6SSatish Balay           col = in[j] - cstart_orig;
23057b952d6SSatish Balay           if (roworiented) value = v[i*n+j]; else value = v[i+j*m];
231f5e9677aSSatish Balay           MatSetValues_SeqBAIJ_A_Private(row,col,value,addv);
23280c1aa95SSatish Balay           /* ierr = MatSetValues_SeqBAIJ(baij->A,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */
23373959e64SBarry Smith         } else if (in[j] < 0) continue;
2342515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
235cb9801acSJed Brown         else if (in[j] >= mat->cmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",in[i],mat->cmap->N-1);
236639f9d9dSBarry Smith #endif
23757b952d6SSatish Balay         else {
23857b952d6SSatish Balay           if (mat->was_assembled) {
239905e6a2fSBarry Smith             if (!baij->colmap) {
240905e6a2fSBarry Smith               ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
241905e6a2fSBarry Smith             }
242aa482453SBarry Smith #if defined (PETSC_USE_CTABLE)
2430f5bd95cSBarry Smith             ierr = PetscTableFind(baij->colmap,in[j]/bs + 1,&col);CHKERRQ(ierr);
244bba1ac68SSatish Balay             col  = col - 1;
24548e59246SSatish Balay #else
246bba1ac68SSatish Balay             col = baij->colmap[in[j]/bs] - 1;
24748e59246SSatish Balay #endif
24857b952d6SSatish Balay             if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) {
24957b952d6SSatish Balay               ierr = DisAssemble_MPIBAIJ(mat);CHKERRQ(ierr);
2508295de27SSatish Balay               col =  in[j];
2519bf004c3SSatish Balay               /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */
2529bf004c3SSatish Balay               B = baij->B;
2539bf004c3SSatish Balay               b = (Mat_SeqBAIJ*)(B)->data;
2549bf004c3SSatish Balay               bimax=b->imax;bi=b->i;bilen=b->ilen;bj=b->j;
2559bf004c3SSatish Balay               ba=b->a;
256bba1ac68SSatish Balay             } else col += in[j]%bs;
2578295de27SSatish Balay           } else col = in[j];
25857b952d6SSatish Balay           if (roworiented) value = v[i*n+j]; else value = v[i+j*m];
25990da58bdSSatish Balay           MatSetValues_SeqBAIJ_B_Private(row,col,value,addv);
26090da58bdSSatish Balay           /* ierr = MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */
26157b952d6SSatish Balay         }
26257b952d6SSatish Balay       }
263d64ed03dSBarry Smith     } else {
26490f02eecSBarry Smith       if (!baij->donotstash) {
265ff2fd236SBarry Smith         if (roworiented) {
266b400d20cSBarry Smith           ierr = MatStashValuesRow_Private(&mat->stash,im[i],n,in,v+i*n,PETSC_FALSE);CHKERRQ(ierr);
267ff2fd236SBarry Smith         } else {
268b400d20cSBarry Smith           ierr = MatStashValuesCol_Private(&mat->stash,im[i],n,in,v+i,m,PETSC_FALSE);CHKERRQ(ierr);
26957b952d6SSatish Balay         }
27057b952d6SSatish Balay       }
27157b952d6SSatish Balay     }
27290f02eecSBarry Smith   }
2733a40ed3dSBarry Smith   PetscFunctionReturn(0);
27457b952d6SSatish Balay }
27557b952d6SSatish Balay 
2764a2ae208SSatish Balay #undef __FUNCT__
27797e5c40aSBarry Smith #define __FUNCT__ "MatSetValuesBlocked_MPIBAIJ"
27897e5c40aSBarry Smith PetscErrorCode MatSetValuesBlocked_MPIBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv)
279ab26458aSBarry Smith {
280ab26458aSBarry Smith   Mat_MPIBAIJ       *baij = (Mat_MPIBAIJ*)mat->data;
281dd6ea824SBarry Smith   const PetscScalar *value;
282f15d580aSBarry Smith   MatScalar         *barray=baij->barray;
283273d9f13SBarry Smith   PetscTruth        roworiented = baij->roworiented;
284dfbe8321SBarry Smith   PetscErrorCode    ierr;
285899cda47SBarry Smith   PetscInt          i,j,ii,jj,row,col,rstart=baij->rstartbs;
286899cda47SBarry Smith   PetscInt          rend=baij->rendbs,cstart=baij->cstartbs,stepval;
287d0f46423SBarry Smith   PetscInt          cend=baij->cendbs,bs=mat->rmap->bs,bs2=baij->bs2;
288ab26458aSBarry Smith 
289b16ae2b1SBarry Smith   PetscFunctionBegin;
29030793edcSSatish Balay   if(!barray) {
29182502324SSatish Balay     ierr         = PetscMalloc(bs2*sizeof(MatScalar),&barray);CHKERRQ(ierr);
29282502324SSatish Balay     baij->barray = barray;
29330793edcSSatish Balay   }
29430793edcSSatish Balay 
295ab26458aSBarry Smith   if (roworiented) {
296ab26458aSBarry Smith     stepval = (n-1)*bs;
297ab26458aSBarry Smith   } else {
298ab26458aSBarry Smith     stepval = (m-1)*bs;
299ab26458aSBarry Smith   }
300ab26458aSBarry Smith   for (i=0; i<m; i++) {
3015ef9f2a5SBarry Smith     if (im[i] < 0) continue;
3022515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
303e32f2f54SBarry Smith     if (im[i] >= baij->Mbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large, row %D max %D",im[i],baij->Mbs-1);
304ab26458aSBarry Smith #endif
305ab26458aSBarry Smith     if (im[i] >= rstart && im[i] < rend) {
306ab26458aSBarry Smith       row = im[i] - rstart;
307ab26458aSBarry Smith       for (j=0; j<n; j++) {
30815b57d14SSatish Balay         /* If NumCol = 1 then a copy is not required */
30915b57d14SSatish Balay         if ((roworiented) && (n == 1)) {
310f15d580aSBarry Smith           barray = (MatScalar*)v + i*bs2;
31115b57d14SSatish Balay         } else if((!roworiented) && (m == 1)) {
312f15d580aSBarry Smith           barray = (MatScalar*)v + j*bs2;
31315b57d14SSatish Balay         } else { /* Here a copy is required */
314ab26458aSBarry Smith           if (roworiented) {
315ab26458aSBarry Smith             value = v + i*(stepval+bs)*bs + j*bs;
316ab26458aSBarry Smith           } else {
317ab26458aSBarry Smith             value = v + j*(stepval+bs)*bs + i*bs;
318abef11f7SSatish Balay           }
31947513183SBarry Smith           for (ii=0; ii<bs; ii++,value+=stepval) {
32047513183SBarry Smith             for (jj=0; jj<bs; jj++) {
32130793edcSSatish Balay               *barray++  = *value++;
32247513183SBarry Smith             }
32347513183SBarry Smith           }
32430793edcSSatish Balay           barray -=bs2;
32515b57d14SSatish Balay         }
326abef11f7SSatish Balay 
327abef11f7SSatish Balay         if (in[j] >= cstart && in[j] < cend){
328abef11f7SSatish Balay           col  = in[j] - cstart;
32997e5c40aSBarry Smith           ierr = MatSetValuesBlocked_SeqBAIJ(baij->A,1,&row,1,&col,barray,addv);CHKERRQ(ierr);
330ab26458aSBarry Smith         }
3315ef9f2a5SBarry Smith         else if (in[j] < 0) continue;
3322515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
333cb9801acSJed Brown         else if (in[j] >= baij->Nbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large, col %D max %D",in[j],baij->Nbs-1);
334ab26458aSBarry Smith #endif
335ab26458aSBarry Smith         else {
336ab26458aSBarry Smith           if (mat->was_assembled) {
337ab26458aSBarry Smith             if (!baij->colmap) {
338ab26458aSBarry Smith               ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
339ab26458aSBarry Smith             }
340a5eb4965SSatish Balay 
3412515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
342aa482453SBarry Smith #if defined (PETSC_USE_CTABLE)
343b24ad042SBarry Smith             { PetscInt data;
3440f5bd95cSBarry Smith               ierr = PetscTableFind(baij->colmap,in[j]+1,&data);CHKERRQ(ierr);
345e32f2f54SBarry Smith               if ((data - 1) % bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap");
346fa46199cSSatish Balay             }
34748e59246SSatish Balay #else
348e32f2f54SBarry Smith             if ((baij->colmap[in[j]] - 1) % bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap");
349a5eb4965SSatish Balay #endif
35048e59246SSatish Balay #endif
351aa482453SBarry Smith #if defined (PETSC_USE_CTABLE)
3520f5bd95cSBarry Smith 	    ierr = PetscTableFind(baij->colmap,in[j]+1,&col);CHKERRQ(ierr);
353fa46199cSSatish Balay             col  = (col - 1)/bs;
35448e59246SSatish Balay #else
355a5eb4965SSatish Balay             col = (baij->colmap[in[j]] - 1)/bs;
35648e59246SSatish Balay #endif
357ab26458aSBarry Smith             if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) {
358ab26458aSBarry Smith               ierr = DisAssemble_MPIBAIJ(mat);CHKERRQ(ierr);
359ab26458aSBarry Smith               col =  in[j];
360ab26458aSBarry Smith             }
361ab26458aSBarry Smith           }
362ab26458aSBarry Smith           else col = in[j];
36397e5c40aSBarry Smith           ierr = MatSetValuesBlocked_SeqBAIJ(baij->B,1,&row,1,&col,barray,addv);CHKERRQ(ierr);
364ab26458aSBarry Smith         }
365ab26458aSBarry Smith       }
366d64ed03dSBarry Smith     } else {
367ab26458aSBarry Smith       if (!baij->donotstash) {
368ff2fd236SBarry Smith         if (roworiented) {
3696fa18ffdSBarry Smith           ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
370ff2fd236SBarry Smith         } else {
3716fa18ffdSBarry Smith           ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
372ff2fd236SBarry Smith         }
373abef11f7SSatish Balay       }
374ab26458aSBarry Smith     }
375ab26458aSBarry Smith   }
3763a40ed3dSBarry Smith   PetscFunctionReturn(0);
377ab26458aSBarry Smith }
3786fa18ffdSBarry Smith 
3790bdbc534SSatish Balay #define HASH_KEY 0.6180339887
380b24ad042SBarry Smith #define HASH(size,key,tmp) (tmp = (key)*HASH_KEY,(PetscInt)((size)*(tmp-(PetscInt)tmp)))
381b24ad042SBarry Smith /* #define HASH(size,key) ((PetscInt)((size)*fmod(((key)*HASH_KEY),1))) */
382b24ad042SBarry Smith /* #define HASH(size,key,tmp) ((PetscInt)((size)*fmod(((key)*HASH_KEY),1))) */
3834a2ae208SSatish Balay #undef __FUNCT__
38497e5c40aSBarry Smith #define __FUNCT__ "MatSetValues_MPIBAIJ_HT"
38597e5c40aSBarry Smith PetscErrorCode MatSetValues_MPIBAIJ_HT(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv)
3860bdbc534SSatish Balay {
3870bdbc534SSatish Balay   Mat_MPIBAIJ    *baij = (Mat_MPIBAIJ*)mat->data;
388273d9f13SBarry Smith   PetscTruth     roworiented = baij->roworiented;
389dfbe8321SBarry Smith   PetscErrorCode ierr;
390b24ad042SBarry Smith   PetscInt       i,j,row,col;
391d0f46423SBarry Smith   PetscInt       rstart_orig=mat->rmap->rstart;
392d0f46423SBarry Smith   PetscInt       rend_orig=mat->rmap->rend,Nbs=baij->Nbs;
393d0f46423SBarry Smith   PetscInt       h1,key,size=baij->ht_size,bs=mat->rmap->bs,*HT=baij->ht,idx;
394329f5518SBarry Smith   PetscReal      tmp;
3953eda8832SBarry Smith   MatScalar      **HD = baij->hd,value;
3962515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
397b24ad042SBarry Smith   PetscInt       total_ct=baij->ht_total_ct,insert_ct=baij->ht_insert_ct;
3984a15367fSSatish Balay #endif
3990bdbc534SSatish Balay 
4000bdbc534SSatish Balay   PetscFunctionBegin;
40171fd2e92SBarry Smith   if (v) PetscValidScalarPointer(v,6);
4020bdbc534SSatish Balay   for (i=0; i<m; i++) {
4032515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
404e32f2f54SBarry Smith     if (im[i] < 0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative row");
405e32f2f54SBarry Smith     if (im[i] >= mat->rmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],mat->rmap->N-1);
4060bdbc534SSatish Balay #endif
4070bdbc534SSatish Balay       row = im[i];
408c2760754SSatish Balay     if (row >= rstart_orig && row < rend_orig) {
4090bdbc534SSatish Balay       for (j=0; j<n; j++) {
4100bdbc534SSatish Balay         col = in[j];
4116fa18ffdSBarry Smith         if (roworiented) value = v[i*n+j]; else value = v[i+j*m];
412b24ad042SBarry Smith         /* Look up PetscInto the Hash Table */
413c2760754SSatish Balay         key = (row/bs)*Nbs+(col/bs)+1;
414c2760754SSatish Balay         h1  = HASH(size,key,tmp);
4150bdbc534SSatish Balay 
416c2760754SSatish Balay 
417c2760754SSatish Balay         idx = h1;
4182515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
419187ce0cbSSatish Balay         insert_ct++;
420187ce0cbSSatish Balay         total_ct++;
421187ce0cbSSatish Balay         if (HT[idx] != key) {
422187ce0cbSSatish Balay           for (idx=h1; (idx<size) && (HT[idx]!=key); idx++,total_ct++);
423187ce0cbSSatish Balay           if (idx == size) {
424187ce0cbSSatish Balay             for (idx=0; (idx<h1) && (HT[idx]!=key); idx++,total_ct++);
425187ce0cbSSatish Balay             if (idx == h1) {
426e32f2f54SBarry Smith               SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"(%D,%D) has no entry in the hash table", row, col);
427187ce0cbSSatish Balay             }
428187ce0cbSSatish Balay           }
429187ce0cbSSatish Balay         }
430187ce0cbSSatish Balay #else
431c2760754SSatish Balay         if (HT[idx] != key) {
432c2760754SSatish Balay           for (idx=h1; (idx<size) && (HT[idx]!=key); idx++);
433c2760754SSatish Balay           if (idx == size) {
434c2760754SSatish Balay             for (idx=0; (idx<h1) && (HT[idx]!=key); idx++);
435c2760754SSatish Balay             if (idx == h1) {
436e32f2f54SBarry Smith               SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"(%D,%D) has no entry in the hash table", row, col);
437c2760754SSatish Balay             }
438c2760754SSatish Balay           }
439c2760754SSatish Balay         }
440187ce0cbSSatish Balay #endif
441c2760754SSatish Balay         /* A HASH table entry is found, so insert the values at the correct address */
442c2760754SSatish Balay         if (addv == ADD_VALUES) *(HD[idx]+ (col % bs)*bs + (row % bs)) += value;
443c2760754SSatish Balay         else                    *(HD[idx]+ (col % bs)*bs + (row % bs))  = value;
4440bdbc534SSatish Balay       }
4450bdbc534SSatish Balay     } else {
4460bdbc534SSatish Balay       if (!baij->donotstash) {
447ff2fd236SBarry Smith         if (roworiented) {
448b400d20cSBarry Smith           ierr = MatStashValuesRow_Private(&mat->stash,im[i],n,in,v+i*n,PETSC_FALSE);CHKERRQ(ierr);
449ff2fd236SBarry Smith         } else {
450b400d20cSBarry Smith           ierr = MatStashValuesCol_Private(&mat->stash,im[i],n,in,v+i,m,PETSC_FALSE);CHKERRQ(ierr);
4510bdbc534SSatish Balay         }
4520bdbc534SSatish Balay       }
4530bdbc534SSatish Balay     }
4540bdbc534SSatish Balay   }
4552515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
456187ce0cbSSatish Balay   baij->ht_total_ct = total_ct;
457187ce0cbSSatish Balay   baij->ht_insert_ct = insert_ct;
458187ce0cbSSatish Balay #endif
4590bdbc534SSatish Balay   PetscFunctionReturn(0);
4600bdbc534SSatish Balay }
4610bdbc534SSatish Balay 
4624a2ae208SSatish Balay #undef __FUNCT__
46397e5c40aSBarry Smith #define __FUNCT__ "MatSetValuesBlocked_MPIBAIJ_HT"
46497e5c40aSBarry Smith PetscErrorCode MatSetValuesBlocked_MPIBAIJ_HT(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv)
4650bdbc534SSatish Balay {
4660bdbc534SSatish Balay   Mat_MPIBAIJ       *baij = (Mat_MPIBAIJ*)mat->data;
467273d9f13SBarry Smith   PetscTruth        roworiented = baij->roworiented;
468dfbe8321SBarry Smith   PetscErrorCode    ierr;
469b24ad042SBarry Smith   PetscInt          i,j,ii,jj,row,col;
470899cda47SBarry Smith   PetscInt          rstart=baij->rstartbs;
471d0f46423SBarry Smith   PetscInt          rend=mat->rmap->rend,stepval,bs=mat->rmap->bs,bs2=baij->bs2,nbs2=n*bs2;
472b24ad042SBarry Smith   PetscInt          h1,key,size=baij->ht_size,idx,*HT=baij->ht,Nbs=baij->Nbs;
473329f5518SBarry Smith   PetscReal         tmp;
4743eda8832SBarry Smith   MatScalar         **HD = baij->hd,*baij_a;
475dd6ea824SBarry Smith   const PetscScalar *v_t,*value;
4762515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
477b24ad042SBarry Smith   PetscInt          total_ct=baij->ht_total_ct,insert_ct=baij->ht_insert_ct;
4784a15367fSSatish Balay #endif
4790bdbc534SSatish Balay 
480d0a41580SSatish Balay   PetscFunctionBegin;
481d0a41580SSatish Balay 
4820bdbc534SSatish Balay   if (roworiented) {
4830bdbc534SSatish Balay     stepval = (n-1)*bs;
4840bdbc534SSatish Balay   } else {
4850bdbc534SSatish Balay     stepval = (m-1)*bs;
4860bdbc534SSatish Balay   }
4870bdbc534SSatish Balay   for (i=0; i<m; i++) {
4882515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
489e32f2f54SBarry Smith     if (im[i] < 0) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %D",im[i]);
490e32f2f54SBarry Smith     if (im[i] >= baij->Mbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],baij->Mbs-1);
4910bdbc534SSatish Balay #endif
4920bdbc534SSatish Balay     row   = im[i];
493ab715e2cSSatish Balay     v_t   = v + i*nbs2;
494c2760754SSatish Balay     if (row >= rstart && row < rend) {
4950bdbc534SSatish Balay       for (j=0; j<n; j++) {
4960bdbc534SSatish Balay         col = in[j];
4970bdbc534SSatish Balay 
4980bdbc534SSatish Balay         /* Look up into the Hash Table */
499c2760754SSatish Balay         key = row*Nbs+col+1;
500c2760754SSatish Balay         h1  = HASH(size,key,tmp);
5010bdbc534SSatish Balay 
502c2760754SSatish Balay         idx = h1;
5032515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
504187ce0cbSSatish Balay         total_ct++;
505187ce0cbSSatish Balay         insert_ct++;
506187ce0cbSSatish Balay        if (HT[idx] != key) {
507187ce0cbSSatish Balay           for (idx=h1; (idx<size) && (HT[idx]!=key); idx++,total_ct++);
508187ce0cbSSatish Balay           if (idx == size) {
509187ce0cbSSatish Balay             for (idx=0; (idx<h1) && (HT[idx]!=key); idx++,total_ct++);
510187ce0cbSSatish Balay             if (idx == h1) {
511e32f2f54SBarry Smith               SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"(%D,%D) has no entry in the hash table", row, col);
512187ce0cbSSatish Balay             }
513187ce0cbSSatish Balay           }
514187ce0cbSSatish Balay         }
515187ce0cbSSatish Balay #else
516c2760754SSatish Balay         if (HT[idx] != key) {
517c2760754SSatish Balay           for (idx=h1; (idx<size) && (HT[idx]!=key); idx++);
518c2760754SSatish Balay           if (idx == size) {
519c2760754SSatish Balay             for (idx=0; (idx<h1) && (HT[idx]!=key); idx++);
520c2760754SSatish Balay             if (idx == h1) {
521e32f2f54SBarry Smith               SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"(%D,%D) has no entry in the hash table", row, col);
522c2760754SSatish Balay             }
523c2760754SSatish Balay           }
524c2760754SSatish Balay         }
525187ce0cbSSatish Balay #endif
526c2760754SSatish Balay         baij_a = HD[idx];
5270bdbc534SSatish Balay         if (roworiented) {
528c2760754SSatish Balay           /*value = v + i*(stepval+bs)*bs + j*bs;*/
529187ce0cbSSatish Balay           /* value = v + (i*(stepval+bs)+j)*bs; */
530187ce0cbSSatish Balay           value = v_t;
531187ce0cbSSatish Balay           v_t  += bs;
532fef45726SSatish Balay           if (addv == ADD_VALUES) {
533c2760754SSatish Balay             for (ii=0; ii<bs; ii++,value+=stepval) {
534c2760754SSatish Balay               for (jj=ii; jj<bs2; jj+=bs) {
535fef45726SSatish Balay                 baij_a[jj]  += *value++;
536b4cc0f5aSSatish Balay               }
537b4cc0f5aSSatish Balay             }
538fef45726SSatish Balay           } else {
539c2760754SSatish Balay             for (ii=0; ii<bs; ii++,value+=stepval) {
540c2760754SSatish Balay               for (jj=ii; jj<bs2; jj+=bs) {
541fef45726SSatish Balay                 baij_a[jj]  = *value++;
542fef45726SSatish Balay               }
543fef45726SSatish Balay             }
544fef45726SSatish Balay           }
5450bdbc534SSatish Balay         } else {
5460bdbc534SSatish Balay           value = v + j*(stepval+bs)*bs + i*bs;
547fef45726SSatish Balay           if (addv == ADD_VALUES) {
548b4cc0f5aSSatish Balay             for (ii=0; ii<bs; ii++,value+=stepval,baij_a+=bs) {
5490bdbc534SSatish Balay               for (jj=0; jj<bs; jj++) {
550fef45726SSatish Balay                 baij_a[jj]  += *value++;
551fef45726SSatish Balay               }
552fef45726SSatish Balay             }
553fef45726SSatish Balay           } else {
554fef45726SSatish Balay             for (ii=0; ii<bs; ii++,value+=stepval,baij_a+=bs) {
555fef45726SSatish Balay               for (jj=0; jj<bs; jj++) {
556fef45726SSatish Balay                 baij_a[jj]  = *value++;
557fef45726SSatish Balay               }
558b4cc0f5aSSatish Balay             }
5590bdbc534SSatish Balay           }
5600bdbc534SSatish Balay         }
5610bdbc534SSatish Balay       }
5620bdbc534SSatish Balay     } else {
5630bdbc534SSatish Balay       if (!baij->donotstash) {
5640bdbc534SSatish Balay         if (roworiented) {
5658798bf22SSatish Balay           ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
5660bdbc534SSatish Balay         } else {
5678798bf22SSatish Balay           ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
5680bdbc534SSatish Balay         }
5690bdbc534SSatish Balay       }
5700bdbc534SSatish Balay     }
5710bdbc534SSatish Balay   }
5722515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
573187ce0cbSSatish Balay   baij->ht_total_ct = total_ct;
574187ce0cbSSatish Balay   baij->ht_insert_ct = insert_ct;
575187ce0cbSSatish Balay #endif
5760bdbc534SSatish Balay   PetscFunctionReturn(0);
5770bdbc534SSatish Balay }
578133cdb44SSatish Balay 
5794a2ae208SSatish Balay #undef __FUNCT__
5804a2ae208SSatish Balay #define __FUNCT__ "MatGetValues_MPIBAIJ"
581b24ad042SBarry Smith PetscErrorCode MatGetValues_MPIBAIJ(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[])
582d6de1c52SSatish Balay {
583d6de1c52SSatish Balay   Mat_MPIBAIJ    *baij = (Mat_MPIBAIJ*)mat->data;
5846849ba73SBarry Smith   PetscErrorCode ierr;
585d0f46423SBarry Smith   PetscInt       bs=mat->rmap->bs,i,j,bsrstart = mat->rmap->rstart,bsrend = mat->rmap->rend;
586d0f46423SBarry Smith   PetscInt       bscstart = mat->cmap->rstart,bscend = mat->cmap->rend,row,col,data;
587d6de1c52SSatish Balay 
588133cdb44SSatish Balay   PetscFunctionBegin;
589d6de1c52SSatish Balay   for (i=0; i<m; i++) {
590e32f2f54SBarry Smith     if (idxm[i] < 0) continue; /* SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %D",idxm[i]);*/
591e32f2f54SBarry Smith     if (idxm[i] >= mat->rmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",idxm[i],mat->rmap->N-1);
592d6de1c52SSatish Balay     if (idxm[i] >= bsrstart && idxm[i] < bsrend) {
593d6de1c52SSatish Balay       row = idxm[i] - bsrstart;
594d6de1c52SSatish Balay       for (j=0; j<n; j++) {
595e32f2f54SBarry Smith         if (idxn[j] < 0) continue; /* SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative column: %D",idxn[j]); */
596e32f2f54SBarry Smith         if (idxn[j] >= mat->cmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",idxn[j],mat->cmap->N-1);
597d6de1c52SSatish Balay         if (idxn[j] >= bscstart && idxn[j] < bscend){
598d6de1c52SSatish Balay           col = idxn[j] - bscstart;
59998dd23e9SBarry Smith           ierr = MatGetValues_SeqBAIJ(baij->A,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr);
600d64ed03dSBarry Smith         } else {
601905e6a2fSBarry Smith           if (!baij->colmap) {
602905e6a2fSBarry Smith             ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
603905e6a2fSBarry Smith           }
604aa482453SBarry Smith #if defined (PETSC_USE_CTABLE)
6050f5bd95cSBarry Smith           ierr = PetscTableFind(baij->colmap,idxn[j]/bs+1,&data);CHKERRQ(ierr);
606fa46199cSSatish Balay           data --;
60748e59246SSatish Balay #else
60848e59246SSatish Balay           data = baij->colmap[idxn[j]/bs]-1;
60948e59246SSatish Balay #endif
61048e59246SSatish Balay           if((data < 0) || (baij->garray[data/bs] != idxn[j]/bs)) *(v+i*n+j) = 0.0;
611d9d09a02SSatish Balay           else {
61248e59246SSatish Balay             col  = data + idxn[j]%bs;
61398dd23e9SBarry Smith             ierr = MatGetValues_SeqBAIJ(baij->B,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr);
614d6de1c52SSatish Balay           }
615d6de1c52SSatish Balay         }
616d6de1c52SSatish Balay       }
617d64ed03dSBarry Smith     } else {
618e32f2f54SBarry Smith       SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local values currently supported");
619d6de1c52SSatish Balay     }
620d6de1c52SSatish Balay   }
6213a40ed3dSBarry Smith  PetscFunctionReturn(0);
622d6de1c52SSatish Balay }
623d6de1c52SSatish Balay 
6244a2ae208SSatish Balay #undef __FUNCT__
6254a2ae208SSatish Balay #define __FUNCT__ "MatNorm_MPIBAIJ"
626dfbe8321SBarry Smith PetscErrorCode MatNorm_MPIBAIJ(Mat mat,NormType type,PetscReal *nrm)
627d6de1c52SSatish Balay {
628d6de1c52SSatish Balay   Mat_MPIBAIJ    *baij = (Mat_MPIBAIJ*)mat->data;
629d6de1c52SSatish Balay   Mat_SeqBAIJ    *amat = (Mat_SeqBAIJ*)baij->A->data,*bmat = (Mat_SeqBAIJ*)baij->B->data;
630dfbe8321SBarry Smith   PetscErrorCode ierr;
631d0f46423SBarry Smith   PetscInt       i,j,bs2=baij->bs2,bs=baij->A->rmap->bs,nz,row,col;
632329f5518SBarry Smith   PetscReal      sum = 0.0;
6333eda8832SBarry Smith   MatScalar      *v;
634d6de1c52SSatish Balay 
635d64ed03dSBarry Smith   PetscFunctionBegin;
636d6de1c52SSatish Balay   if (baij->size == 1) {
637064f8208SBarry Smith     ierr =  MatNorm(baij->A,type,nrm);CHKERRQ(ierr);
638d6de1c52SSatish Balay   } else {
639d6de1c52SSatish Balay     if (type == NORM_FROBENIUS) {
640d6de1c52SSatish Balay       v = amat->a;
6418a62d963SHong Zhang       nz = amat->nz*bs2;
6428a62d963SHong Zhang       for (i=0; i<nz; i++) {
643aa482453SBarry Smith #if defined(PETSC_USE_COMPLEX)
644329f5518SBarry Smith         sum += PetscRealPart(PetscConj(*v)*(*v)); v++;
645d6de1c52SSatish Balay #else
646d6de1c52SSatish Balay         sum += (*v)*(*v); v++;
647d6de1c52SSatish Balay #endif
648d6de1c52SSatish Balay       }
649d6de1c52SSatish Balay       v = bmat->a;
6508a62d963SHong Zhang       nz = bmat->nz*bs2;
6518a62d963SHong Zhang       for (i=0; i<nz; i++) {
652aa482453SBarry Smith #if defined(PETSC_USE_COMPLEX)
653329f5518SBarry Smith         sum += PetscRealPart(PetscConj(*v)*(*v)); v++;
654d6de1c52SSatish Balay #else
655d6de1c52SSatish Balay         sum += (*v)*(*v); v++;
656d6de1c52SSatish Balay #endif
657d6de1c52SSatish Balay       }
6587adad957SLisandro Dalcin       ierr = MPI_Allreduce(&sum,nrm,1,MPIU_REAL,MPI_SUM,((PetscObject)mat)->comm);CHKERRQ(ierr);
659064f8208SBarry Smith       *nrm = sqrt(*nrm);
6608a62d963SHong Zhang     } else if (type == NORM_1) { /* max column sum */
6618a62d963SHong Zhang       PetscReal *tmp,*tmp2;
662899cda47SBarry Smith       PetscInt  *jj,*garray=baij->garray,cstart=baij->rstartbs;
663fca92195SBarry Smith       ierr = PetscMalloc2(mat->cmap->N,PetscReal,&tmp,mat->cmap->N,PetscReal,&tmp2);CHKERRQ(ierr);
664d0f46423SBarry Smith       ierr = PetscMemzero(tmp,mat->cmap->N*sizeof(PetscReal));CHKERRQ(ierr);
6658a62d963SHong Zhang       v = amat->a; jj = amat->j;
6668a62d963SHong Zhang       for (i=0; i<amat->nz; i++) {
6678a62d963SHong Zhang         for (j=0; j<bs; j++){
6688a62d963SHong Zhang           col = bs*(cstart + *jj) + j; /* column index */
6698a62d963SHong Zhang           for (row=0; row<bs; row++){
6708a62d963SHong Zhang             tmp[col] += PetscAbsScalar(*v);  v++;
6718a62d963SHong Zhang           }
6728a62d963SHong Zhang         }
6738a62d963SHong Zhang         jj++;
6748a62d963SHong Zhang       }
6758a62d963SHong Zhang       v = bmat->a; jj = bmat->j;
6768a62d963SHong Zhang       for (i=0; i<bmat->nz; i++) {
6778a62d963SHong Zhang         for (j=0; j<bs; j++){
6788a62d963SHong Zhang           col = bs*garray[*jj] + j;
6798a62d963SHong Zhang           for (row=0; row<bs; row++){
6808a62d963SHong Zhang             tmp[col] += PetscAbsScalar(*v); v++;
6818a62d963SHong Zhang           }
6828a62d963SHong Zhang         }
6838a62d963SHong Zhang         jj++;
6848a62d963SHong Zhang       }
685d0f46423SBarry Smith       ierr = MPI_Allreduce(tmp,tmp2,mat->cmap->N,MPIU_REAL,MPI_SUM,((PetscObject)mat)->comm);CHKERRQ(ierr);
6868a62d963SHong Zhang       *nrm = 0.0;
687d0f46423SBarry Smith       for (j=0; j<mat->cmap->N; j++) {
6888a62d963SHong Zhang         if (tmp2[j] > *nrm) *nrm = tmp2[j];
6898a62d963SHong Zhang       }
690fca92195SBarry Smith       ierr = PetscFree2(tmp,tmp2);CHKERRQ(ierr);
6918a62d963SHong Zhang     } else if (type == NORM_INFINITY) { /* max row sum */
692577dd1f9SKris Buschelman       PetscReal *sums;
693cb9801acSJed Brown       ierr = PetscMalloc(bs*sizeof(PetscReal),&sums);CHKERRQ(ierr);
6948a62d963SHong Zhang       sum = 0.0;
6958a62d963SHong Zhang       for (j=0; j<amat->mbs; j++) {
6968a62d963SHong Zhang         for (row=0; row<bs; row++) sums[row] = 0.0;
6978a62d963SHong Zhang         v = amat->a + bs2*amat->i[j];
6988a62d963SHong Zhang         nz = amat->i[j+1]-amat->i[j];
6998a62d963SHong Zhang         for (i=0; i<nz; i++) {
7008a62d963SHong Zhang           for (col=0; col<bs; col++){
7018a62d963SHong Zhang             for (row=0; row<bs; row++){
7028a62d963SHong Zhang               sums[row] += PetscAbsScalar(*v); v++;
7038a62d963SHong Zhang             }
7048a62d963SHong Zhang           }
7058a62d963SHong Zhang         }
7068a62d963SHong Zhang         v = bmat->a + bs2*bmat->i[j];
7078a62d963SHong Zhang         nz = bmat->i[j+1]-bmat->i[j];
7088a62d963SHong Zhang         for (i=0; i<nz; i++) {
7098a62d963SHong Zhang           for (col=0; col<bs; col++){
7108a62d963SHong Zhang             for (row=0; row<bs; row++){
7118a62d963SHong Zhang               sums[row] += PetscAbsScalar(*v); v++;
7128a62d963SHong Zhang             }
7138a62d963SHong Zhang           }
7148a62d963SHong Zhang         }
7158a62d963SHong Zhang         for (row=0; row<bs; row++){
7168a62d963SHong Zhang           if (sums[row] > sum) sum = sums[row];
7178a62d963SHong Zhang         }
7188a62d963SHong Zhang       }
7197adad957SLisandro Dalcin       ierr = MPI_Allreduce(&sum,nrm,1,MPIU_REAL,MPI_MAX,((PetscObject)mat)->comm);CHKERRQ(ierr);
720577dd1f9SKris Buschelman       ierr = PetscFree(sums);CHKERRQ(ierr);
721e7e72b3dSBarry Smith     } else SETERRQ(((PetscObject)mat)->comm,PETSC_ERR_SUP,"No support for this norm yet");
722d64ed03dSBarry Smith   }
7233a40ed3dSBarry Smith   PetscFunctionReturn(0);
724d6de1c52SSatish Balay }
72557b952d6SSatish Balay 
726fef45726SSatish Balay /*
727fef45726SSatish Balay   Creates the hash table, and sets the table
728fef45726SSatish Balay   This table is created only once.
729fef45726SSatish Balay   If new entried need to be added to the matrix
730fef45726SSatish Balay   then the hash table has to be destroyed and
731fef45726SSatish Balay   recreated.
732fef45726SSatish Balay */
7334a2ae208SSatish Balay #undef __FUNCT__
7344a2ae208SSatish Balay #define __FUNCT__ "MatCreateHashTable_MPIBAIJ_Private"
735dfbe8321SBarry Smith PetscErrorCode MatCreateHashTable_MPIBAIJ_Private(Mat mat,PetscReal factor)
736596b8d2eSBarry Smith {
737596b8d2eSBarry Smith   Mat_MPIBAIJ    *baij = (Mat_MPIBAIJ*)mat->data;
738596b8d2eSBarry Smith   Mat            A = baij->A,B=baij->B;
739596b8d2eSBarry Smith   Mat_SeqBAIJ    *a=(Mat_SeqBAIJ *)A->data,*b=(Mat_SeqBAIJ *)B->data;
740b24ad042SBarry Smith   PetscInt       i,j,k,nz=a->nz+b->nz,h1,*ai=a->i,*aj=a->j,*bi=b->i,*bj=b->j;
7416849ba73SBarry Smith   PetscErrorCode ierr;
742fca92195SBarry Smith   PetscInt       ht_size,bs2=baij->bs2,rstart=baij->rstartbs;
743899cda47SBarry Smith   PetscInt       cstart=baij->cstartbs,*garray=baij->garray,row,col,Nbs=baij->Nbs;
744b24ad042SBarry Smith   PetscInt       *HT,key;
7453eda8832SBarry Smith   MatScalar      **HD;
746329f5518SBarry Smith   PetscReal      tmp;
7476cf91177SBarry Smith #if defined(PETSC_USE_INFO)
748b24ad042SBarry Smith   PetscInt       ct=0,max=0;
7494a15367fSSatish Balay #endif
750fef45726SSatish Balay 
751d64ed03dSBarry Smith   PetscFunctionBegin;
752fca92195SBarry Smith   if (baij->ht) PetscFunctionReturn(0);
753fef45726SSatish Balay 
754fca92195SBarry Smith   baij->ht_size = (PetscInt)(factor*nz);
755fca92195SBarry Smith   ht_size       = baij->ht_size;
7560bdbc534SSatish Balay 
757fef45726SSatish Balay   /* Allocate Memory for Hash Table */
758fca92195SBarry Smith   ierr = PetscMalloc2(ht_size,MatScalar*,&baij->hd,ht_size,PetscInt,&baij->ht);CHKERRQ(ierr);
759fca92195SBarry Smith   ierr = PetscMemzero(baij->hd,ht_size*sizeof(MatScalar*));CHKERRQ(ierr);
760fca92195SBarry Smith   ierr = PetscMemzero(baij->ht,ht_size*sizeof(PetscInt));CHKERRQ(ierr);
761b9e4cc15SSatish Balay   HD   = baij->hd;
762a07cd24cSSatish Balay   HT   = baij->ht;
763b9e4cc15SSatish Balay 
764596b8d2eSBarry Smith   /* Loop Over A */
7650bdbc534SSatish Balay   for (i=0; i<a->mbs; i++) {
766596b8d2eSBarry Smith     for (j=ai[i]; j<ai[i+1]; j++) {
7670bdbc534SSatish Balay       row = i+rstart;
7680bdbc534SSatish Balay       col = aj[j]+cstart;
769596b8d2eSBarry Smith 
770187ce0cbSSatish Balay       key = row*Nbs + col + 1;
771fca92195SBarry Smith       h1  = HASH(ht_size,key,tmp);
772fca92195SBarry Smith       for (k=0; k<ht_size; k++){
773fca92195SBarry Smith         if (!HT[(h1+k)%ht_size]) {
774fca92195SBarry Smith           HT[(h1+k)%ht_size] = key;
775fca92195SBarry Smith           HD[(h1+k)%ht_size] = a->a + j*bs2;
776596b8d2eSBarry Smith           break;
7776cf91177SBarry Smith #if defined(PETSC_USE_INFO)
778187ce0cbSSatish Balay         } else {
779187ce0cbSSatish Balay           ct++;
780187ce0cbSSatish Balay #endif
781596b8d2eSBarry Smith         }
782187ce0cbSSatish Balay       }
7836cf91177SBarry Smith #if defined(PETSC_USE_INFO)
784187ce0cbSSatish Balay       if (k> max) max = k;
785187ce0cbSSatish Balay #endif
786596b8d2eSBarry Smith     }
787596b8d2eSBarry Smith   }
788596b8d2eSBarry Smith   /* Loop Over B */
7890bdbc534SSatish Balay   for (i=0; i<b->mbs; i++) {
790596b8d2eSBarry Smith     for (j=bi[i]; j<bi[i+1]; j++) {
7910bdbc534SSatish Balay       row = i+rstart;
7920bdbc534SSatish Balay       col = garray[bj[j]];
793187ce0cbSSatish Balay       key = row*Nbs + col + 1;
794fca92195SBarry Smith       h1  = HASH(ht_size,key,tmp);
795fca92195SBarry Smith       for (k=0; k<ht_size; k++){
796fca92195SBarry Smith         if (!HT[(h1+k)%ht_size]) {
797fca92195SBarry Smith           HT[(h1+k)%ht_size] = key;
798fca92195SBarry Smith           HD[(h1+k)%ht_size] = b->a + j*bs2;
799596b8d2eSBarry Smith           break;
8006cf91177SBarry Smith #if defined(PETSC_USE_INFO)
801187ce0cbSSatish Balay         } else {
802187ce0cbSSatish Balay           ct++;
803187ce0cbSSatish Balay #endif
804596b8d2eSBarry Smith         }
805187ce0cbSSatish Balay       }
8066cf91177SBarry Smith #if defined(PETSC_USE_INFO)
807187ce0cbSSatish Balay       if (k> max) max = k;
808187ce0cbSSatish Balay #endif
809596b8d2eSBarry Smith     }
810596b8d2eSBarry Smith   }
811596b8d2eSBarry Smith 
812596b8d2eSBarry Smith   /* Print Summary */
8136cf91177SBarry Smith #if defined(PETSC_USE_INFO)
814fca92195SBarry Smith   for (i=0,j=0; i<ht_size; i++) {
815596b8d2eSBarry Smith     if (HT[i]) {j++;}
816c38d4ed2SBarry Smith   }
8171e2582c4SBarry Smith   ierr = PetscInfo2(mat,"Average Search = %5.2f,max search = %D\n",(!j)? 0.0:((PetscReal)(ct+j))/j,max);CHKERRQ(ierr);
818187ce0cbSSatish Balay #endif
8193a40ed3dSBarry Smith   PetscFunctionReturn(0);
820596b8d2eSBarry Smith }
82157b952d6SSatish Balay 
8224a2ae208SSatish Balay #undef __FUNCT__
8234a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyBegin_MPIBAIJ"
824dfbe8321SBarry Smith PetscErrorCode MatAssemblyBegin_MPIBAIJ(Mat mat,MatAssemblyType mode)
825bbb85fb3SSatish Balay {
826bbb85fb3SSatish Balay   Mat_MPIBAIJ    *baij = (Mat_MPIBAIJ*)mat->data;
827dfbe8321SBarry Smith   PetscErrorCode ierr;
828b24ad042SBarry Smith   PetscInt       nstash,reallocs;
829bbb85fb3SSatish Balay   InsertMode     addv;
830bbb85fb3SSatish Balay 
831bbb85fb3SSatish Balay   PetscFunctionBegin;
832bbb85fb3SSatish Balay   if (baij->donotstash) {
833bbb85fb3SSatish Balay     PetscFunctionReturn(0);
834bbb85fb3SSatish Balay   }
835bbb85fb3SSatish Balay 
836bbb85fb3SSatish Balay   /* make sure all processors are either in INSERTMODE or ADDMODE */
8377adad957SLisandro Dalcin   ierr = MPI_Allreduce(&mat->insertmode,&addv,1,MPI_INT,MPI_BOR,((PetscObject)mat)->comm);CHKERRQ(ierr);
838e7e72b3dSBarry Smith   if (addv == (ADD_VALUES|INSERT_VALUES)) SETERRQ(((PetscObject)mat)->comm,PETSC_ERR_ARG_WRONGSTATE,"Some processors inserted others added");
839bbb85fb3SSatish Balay   mat->insertmode = addv; /* in case this processor had no cache */
840bbb85fb3SSatish Balay 
841d0f46423SBarry Smith   ierr = MatStashScatterBegin_Private(mat,&mat->stash,mat->rmap->range);CHKERRQ(ierr);
8421e2582c4SBarry Smith   ierr = MatStashScatterBegin_Private(mat,&mat->bstash,baij->rangebs);CHKERRQ(ierr);
8438798bf22SSatish Balay   ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr);
8441e2582c4SBarry Smith   ierr = PetscInfo2(mat,"Stash has %D entries,uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr);
84546680499SSatish Balay   ierr = MatStashGetInfo_Private(&mat->bstash,&nstash,&reallocs);CHKERRQ(ierr);
8461e2582c4SBarry Smith   ierr = PetscInfo2(mat,"Block-Stash has %D entries, uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr);
847bbb85fb3SSatish Balay   PetscFunctionReturn(0);
848bbb85fb3SSatish Balay }
849bbb85fb3SSatish Balay 
8504a2ae208SSatish Balay #undef __FUNCT__
8514a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyEnd_MPIBAIJ"
852dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_MPIBAIJ(Mat mat,MatAssemblyType mode)
853bbb85fb3SSatish Balay {
854bbb85fb3SSatish Balay   Mat_MPIBAIJ    *baij=(Mat_MPIBAIJ*)mat->data;
85591c97fd4SSatish Balay   Mat_SeqBAIJ    *a=(Mat_SeqBAIJ*)baij->A->data;
8566849ba73SBarry Smith   PetscErrorCode ierr;
857b24ad042SBarry Smith   PetscInt       i,j,rstart,ncols,flg,bs2=baij->bs2;
858e44c0bd4SBarry Smith   PetscInt       *row,*col;
859e44c0bd4SBarry Smith   PetscTruth     r1,r2,r3,other_disassembled;
8603eda8832SBarry Smith   MatScalar      *val;
861bbb85fb3SSatish Balay   InsertMode     addv = mat->insertmode;
862b24ad042SBarry Smith   PetscMPIInt    n;
863bbb85fb3SSatish Balay 
86491c97fd4SSatish Balay   /* do not use 'b=(Mat_SeqBAIJ*)baij->B->data' as B can be reset in disassembly */
865bbb85fb3SSatish Balay   PetscFunctionBegin;
866bbb85fb3SSatish Balay   if (!baij->donotstash) {
867a2d1c673SSatish Balay     while (1) {
8688798bf22SSatish Balay       ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr);
869a2d1c673SSatish Balay       if (!flg) break;
870a2d1c673SSatish Balay 
871bbb85fb3SSatish Balay       for (i=0; i<n;) {
872bbb85fb3SSatish Balay         /* Now identify the consecutive vals belonging to the same row */
873bbb85fb3SSatish Balay         for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; }
874bbb85fb3SSatish Balay         if (j < n) ncols = j-i;
875bbb85fb3SSatish Balay         else       ncols = n-i;
876bbb85fb3SSatish Balay         /* Now assemble all these values with a single function call */
87797e5c40aSBarry Smith         ierr = MatSetValues_MPIBAIJ(mat,1,row+i,ncols,col+i,val+i,addv);CHKERRQ(ierr);
878bbb85fb3SSatish Balay         i = j;
879bbb85fb3SSatish Balay       }
880bbb85fb3SSatish Balay     }
8818798bf22SSatish Balay     ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr);
882a2d1c673SSatish Balay     /* Now process the block-stash. Since the values are stashed column-oriented,
883a2d1c673SSatish Balay        set the roworiented flag to column oriented, and after MatSetValues()
884a2d1c673SSatish Balay        restore the original flags */
885a2d1c673SSatish Balay     r1 = baij->roworiented;
886a2d1c673SSatish Balay     r2 = a->roworiented;
88791c97fd4SSatish Balay     r3 = ((Mat_SeqBAIJ*)baij->B->data)->roworiented;
8887c922b88SBarry Smith     baij->roworiented = PETSC_FALSE;
8897c922b88SBarry Smith     a->roworiented    = PETSC_FALSE;
89091c97fd4SSatish Balay     (((Mat_SeqBAIJ*)baij->B->data))->roworiented    = PETSC_FALSE; /* b->roworiented */
891a2d1c673SSatish Balay     while (1) {
8928798bf22SSatish Balay       ierr = MatStashScatterGetMesg_Private(&mat->bstash,&n,&row,&col,&val,&flg);CHKERRQ(ierr);
893a2d1c673SSatish Balay       if (!flg) break;
894a2d1c673SSatish Balay 
895a2d1c673SSatish Balay       for (i=0; i<n;) {
896a2d1c673SSatish Balay         /* Now identify the consecutive vals belonging to the same row */
897a2d1c673SSatish Balay         for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; }
898a2d1c673SSatish Balay         if (j < n) ncols = j-i;
899a2d1c673SSatish Balay         else       ncols = n-i;
90097e5c40aSBarry Smith         ierr = MatSetValuesBlocked_MPIBAIJ(mat,1,row+i,ncols,col+i,val+i*bs2,addv);CHKERRQ(ierr);
901a2d1c673SSatish Balay         i = j;
902a2d1c673SSatish Balay       }
903a2d1c673SSatish Balay     }
9048798bf22SSatish Balay     ierr = MatStashScatterEnd_Private(&mat->bstash);CHKERRQ(ierr);
905a2d1c673SSatish Balay     baij->roworiented = r1;
906a2d1c673SSatish Balay     a->roworiented    = r2;
90791c97fd4SSatish Balay     ((Mat_SeqBAIJ*)baij->B->data)->roworiented    = r3; /* b->roworiented */
908bbb85fb3SSatish Balay   }
909bbb85fb3SSatish Balay 
910bbb85fb3SSatish Balay   ierr = MatAssemblyBegin(baij->A,mode);CHKERRQ(ierr);
911bbb85fb3SSatish Balay   ierr = MatAssemblyEnd(baij->A,mode);CHKERRQ(ierr);
912bbb85fb3SSatish Balay 
913bbb85fb3SSatish Balay   /* determine if any processor has disassembled, if so we must
914bbb85fb3SSatish Balay      also disassemble ourselfs, in order that we may reassemble. */
915bbb85fb3SSatish Balay   /*
916bbb85fb3SSatish Balay      if nonzero structure of submatrix B cannot change then we know that
917bbb85fb3SSatish Balay      no processor disassembled thus we can skip this stuff
918bbb85fb3SSatish Balay   */
919bbb85fb3SSatish Balay   if (!((Mat_SeqBAIJ*)baij->B->data)->nonew)  {
9207adad957SLisandro Dalcin     ierr = MPI_Allreduce(&mat->was_assembled,&other_disassembled,1,MPI_INT,MPI_PROD,((PetscObject)mat)->comm);CHKERRQ(ierr);
921bbb85fb3SSatish Balay     if (mat->was_assembled && !other_disassembled) {
922bbb85fb3SSatish Balay       ierr = DisAssemble_MPIBAIJ(mat);CHKERRQ(ierr);
923bbb85fb3SSatish Balay     }
924bbb85fb3SSatish Balay   }
925bbb85fb3SSatish Balay 
926bbb85fb3SSatish Balay   if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) {
927bbb85fb3SSatish Balay     ierr = MatSetUpMultiply_MPIBAIJ(mat);CHKERRQ(ierr);
928bbb85fb3SSatish Balay   }
92991c97fd4SSatish Balay   ((Mat_SeqBAIJ*)baij->B->data)->compressedrow.use = PETSC_TRUE; /* b->compressedrow.use */
930bbb85fb3SSatish Balay   ierr = MatAssemblyBegin(baij->B,mode);CHKERRQ(ierr);
931bbb85fb3SSatish Balay   ierr = MatAssemblyEnd(baij->B,mode);CHKERRQ(ierr);
932bbb85fb3SSatish Balay 
9336cf91177SBarry Smith #if defined(PETSC_USE_INFO)
934bbb85fb3SSatish Balay   if (baij->ht && mode== MAT_FINAL_ASSEMBLY) {
9351e2582c4SBarry Smith     ierr = PetscInfo1(mat,"Average Hash Table Search in MatSetValues = %5.2f\n",((PetscReal)baij->ht_total_ct)/baij->ht_insert_ct);CHKERRQ(ierr);
936bbb85fb3SSatish Balay     baij->ht_total_ct  = 0;
937bbb85fb3SSatish Balay     baij->ht_insert_ct = 0;
938bbb85fb3SSatish Balay   }
939bbb85fb3SSatish Balay #endif
940bbb85fb3SSatish Balay   if (baij->ht_flag && !baij->ht && mode == MAT_FINAL_ASSEMBLY) {
941bbb85fb3SSatish Balay     ierr = MatCreateHashTable_MPIBAIJ_Private(mat,baij->ht_fact);CHKERRQ(ierr);
942bbb85fb3SSatish Balay     mat->ops->setvalues        = MatSetValues_MPIBAIJ_HT;
943bbb85fb3SSatish Balay     mat->ops->setvaluesblocked = MatSetValuesBlocked_MPIBAIJ_HT;
944bbb85fb3SSatish Balay   }
945bbb85fb3SSatish Balay 
946fca92195SBarry Smith   ierr = PetscFree2(baij->rowvalues,baij->rowindices);CHKERRQ(ierr);
947606d414cSSatish Balay   baij->rowvalues = 0;
948bbb85fb3SSatish Balay   PetscFunctionReturn(0);
949bbb85fb3SSatish Balay }
95057b952d6SSatish Balay 
9514a2ae208SSatish Balay #undef __FUNCT__
9524a2ae208SSatish Balay #define __FUNCT__ "MatView_MPIBAIJ_ASCIIorDraworSocket"
9536849ba73SBarry Smith static PetscErrorCode MatView_MPIBAIJ_ASCIIorDraworSocket(Mat mat,PetscViewer viewer)
95457b952d6SSatish Balay {
95557b952d6SSatish Balay   Mat_MPIBAIJ       *baij = (Mat_MPIBAIJ*)mat->data;
956dfbe8321SBarry Smith   PetscErrorCode    ierr;
957b24ad042SBarry Smith   PetscMPIInt       size = baij->size,rank = baij->rank;
958d0f46423SBarry Smith   PetscInt          bs = mat->rmap->bs;
95932077d6dSBarry Smith   PetscTruth        iascii,isdraw;
960b0a32e0cSBarry Smith   PetscViewer       sviewer;
961f3ef73ceSBarry Smith   PetscViewerFormat format;
96257b952d6SSatish Balay 
963d64ed03dSBarry Smith   PetscFunctionBegin;
96432077d6dSBarry Smith   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&iascii);CHKERRQ(ierr);
965fb9695e5SSatish Balay   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr);
96632077d6dSBarry Smith   if (iascii) {
967b0a32e0cSBarry Smith     ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr);
968456192e2SBarry Smith     if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) {
9694e220ebcSLois Curfman McInnes       MatInfo info;
9707adad957SLisandro Dalcin       ierr = MPI_Comm_rank(((PetscObject)mat)->comm,&rank);CHKERRQ(ierr);
971d41123aaSBarry Smith       ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr);
97277431f27SBarry Smith       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Local rows %D nz %D nz alloced %D bs %D mem %D\n",
973d0f46423SBarry Smith               rank,mat->rmap->N,(PetscInt)info.nz_used*bs,(PetscInt)info.nz_allocated*bs,
974d0f46423SBarry Smith               mat->rmap->bs,(PetscInt)info.memory);CHKERRQ(ierr);
975d132466eSBarry Smith       ierr = MatGetInfo(baij->A,MAT_LOCAL,&info);CHKERRQ(ierr);
97677431f27SBarry Smith       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] on-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used*bs);CHKERRQ(ierr);
977d132466eSBarry Smith       ierr = MatGetInfo(baij->B,MAT_LOCAL,&info);CHKERRQ(ierr);
97877431f27SBarry Smith       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] off-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used*bs);CHKERRQ(ierr);
979b0a32e0cSBarry Smith       ierr = PetscViewerFlush(viewer);CHKERRQ(ierr);
98007d81ca4SBarry Smith       ierr = PetscViewerASCIIPrintf(viewer,"Information on VecScatter used in matrix-vector product: \n");CHKERRQ(ierr);
98157b952d6SSatish Balay       ierr = VecScatterView(baij->Mvctx,viewer);CHKERRQ(ierr);
9823a40ed3dSBarry Smith       PetscFunctionReturn(0);
983fb9695e5SSatish Balay     } else if (format == PETSC_VIEWER_ASCII_INFO) {
98477431f27SBarry Smith       ierr = PetscViewerASCIIPrintf(viewer,"  block size is %D\n",bs);CHKERRQ(ierr);
9853a40ed3dSBarry Smith       PetscFunctionReturn(0);
98604929863SHong Zhang     } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) {
98704929863SHong Zhang       PetscFunctionReturn(0);
98857b952d6SSatish Balay     }
98957b952d6SSatish Balay   }
99057b952d6SSatish Balay 
9910f5bd95cSBarry Smith   if (isdraw) {
992b0a32e0cSBarry Smith     PetscDraw       draw;
99357b952d6SSatish Balay     PetscTruth isnull;
994b0a32e0cSBarry Smith     ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr);
995b0a32e0cSBarry Smith     ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); if (isnull) PetscFunctionReturn(0);
99657b952d6SSatish Balay   }
99757b952d6SSatish Balay 
99857b952d6SSatish Balay   if (size == 1) {
9997adad957SLisandro Dalcin     ierr = PetscObjectSetName((PetscObject)baij->A,((PetscObject)mat)->name);CHKERRQ(ierr);
100057b952d6SSatish Balay     ierr = MatView(baij->A,viewer);CHKERRQ(ierr);
1001d64ed03dSBarry Smith   } else {
100257b952d6SSatish Balay     /* assemble the entire matrix onto first processor. */
100357b952d6SSatish Balay     Mat         A;
100457b952d6SSatish Balay     Mat_SeqBAIJ *Aloc;
1005d0f46423SBarry Smith     PetscInt    M = mat->rmap->N,N = mat->cmap->N,*ai,*aj,col,i,j,k,*rvals,mbs = baij->mbs;
10063eda8832SBarry Smith     MatScalar   *a;
100757b952d6SSatish Balay 
1008f204ca49SKris Buschelman     /* Here we are creating a temporary matrix, so will assume MPIBAIJ is acceptable */
1009f204ca49SKris Buschelman     /* Perhaps this should be the type of mat? */
10107adad957SLisandro Dalcin     ierr = MatCreate(((PetscObject)mat)->comm,&A);CHKERRQ(ierr);
101157b952d6SSatish Balay     if (!rank) {
1012f69a0ea3SMatthew Knepley       ierr = MatSetSizes(A,M,N,M,N);CHKERRQ(ierr);
1013d64ed03dSBarry Smith     } else {
1014f69a0ea3SMatthew Knepley       ierr = MatSetSizes(A,0,0,M,N);CHKERRQ(ierr);
101557b952d6SSatish Balay     }
1016f204ca49SKris Buschelman     ierr = MatSetType(A,MATMPIBAIJ);CHKERRQ(ierr);
1017d0f46423SBarry Smith     ierr = MatMPIBAIJSetPreallocation(A,mat->rmap->bs,0,PETSC_NULL,0,PETSC_NULL);CHKERRQ(ierr);
101852e6d16bSBarry Smith     ierr = PetscLogObjectParent(mat,A);CHKERRQ(ierr);
101957b952d6SSatish Balay 
102057b952d6SSatish Balay     /* copy over the A part */
102157b952d6SSatish Balay     Aloc = (Mat_SeqBAIJ*)baij->A->data;
102257b952d6SSatish Balay     ai   = Aloc->i; aj = Aloc->j; a = Aloc->a;
1023b24ad042SBarry Smith     ierr = PetscMalloc(bs*sizeof(PetscInt),&rvals);CHKERRQ(ierr);
102457b952d6SSatish Balay 
102557b952d6SSatish Balay     for (i=0; i<mbs; i++) {
1026899cda47SBarry Smith       rvals[0] = bs*(baij->rstartbs + i);
102757b952d6SSatish Balay       for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; }
102857b952d6SSatish Balay       for (j=ai[i]; j<ai[i+1]; j++) {
1029899cda47SBarry Smith         col = (baij->cstartbs+aj[j])*bs;
103057b952d6SSatish Balay         for (k=0; k<bs; k++) {
103197e5c40aSBarry Smith           ierr = MatSetValues_MPIBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr);
1032cee3aa6bSSatish Balay           col++; a += bs;
103357b952d6SSatish Balay         }
103457b952d6SSatish Balay       }
103557b952d6SSatish Balay     }
103657b952d6SSatish Balay     /* copy over the B part */
103757b952d6SSatish Balay     Aloc = (Mat_SeqBAIJ*)baij->B->data;
103857b952d6SSatish Balay     ai = Aloc->i; aj = Aloc->j; a = Aloc->a;
103957b952d6SSatish Balay     for (i=0; i<mbs; i++) {
1040899cda47SBarry Smith       rvals[0] = bs*(baij->rstartbs + i);
104157b952d6SSatish Balay       for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; }
104257b952d6SSatish Balay       for (j=ai[i]; j<ai[i+1]; j++) {
104357b952d6SSatish Balay         col = baij->garray[aj[j]]*bs;
104457b952d6SSatish Balay         for (k=0; k<bs; k++) {
104597e5c40aSBarry Smith           ierr = MatSetValues_MPIBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr);
1046cee3aa6bSSatish Balay           col++; a += bs;
104757b952d6SSatish Balay         }
104857b952d6SSatish Balay       }
104957b952d6SSatish Balay     }
1050606d414cSSatish Balay     ierr = PetscFree(rvals);CHKERRQ(ierr);
10516d4a8577SBarry Smith     ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
10526d4a8577SBarry Smith     ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
105355843e3eSBarry Smith     /*
105455843e3eSBarry Smith        Everyone has to call to draw the matrix since the graphics waits are
1055b0a32e0cSBarry Smith        synchronized across all processors that share the PetscDraw object
105655843e3eSBarry Smith     */
1057b0a32e0cSBarry Smith     ierr = PetscViewerGetSingleton(viewer,&sviewer);CHKERRQ(ierr);
1058f14a1c24SBarry Smith     if (!rank) {
10597adad957SLisandro Dalcin       ierr = PetscObjectSetName((PetscObject)((Mat_MPIBAIJ*)(A->data))->A,((PetscObject)mat)->name);CHKERRQ(ierr);
10606831982aSBarry Smith       ierr = MatView(((Mat_MPIBAIJ*)(A->data))->A,sviewer);CHKERRQ(ierr);
106157b952d6SSatish Balay     }
1062b0a32e0cSBarry Smith     ierr = PetscViewerRestoreSingleton(viewer,&sviewer);CHKERRQ(ierr);
106357b952d6SSatish Balay     ierr = MatDestroy(A);CHKERRQ(ierr);
106457b952d6SSatish Balay   }
10653a40ed3dSBarry Smith   PetscFunctionReturn(0);
106657b952d6SSatish Balay }
106757b952d6SSatish Balay 
10684a2ae208SSatish Balay #undef __FUNCT__
10694a2ae208SSatish Balay #define __FUNCT__ "MatView_MPIBAIJ"
1070dfbe8321SBarry Smith PetscErrorCode MatView_MPIBAIJ(Mat mat,PetscViewer viewer)
107157b952d6SSatish Balay {
1072dfbe8321SBarry Smith   PetscErrorCode ierr;
107332077d6dSBarry Smith   PetscTruth     iascii,isdraw,issocket,isbinary;
107457b952d6SSatish Balay 
1075d64ed03dSBarry Smith   PetscFunctionBegin;
107632077d6dSBarry Smith   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&iascii);CHKERRQ(ierr);
1077fb9695e5SSatish Balay   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr);
1078b0a32e0cSBarry Smith   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_SOCKET,&issocket);CHKERRQ(ierr);
1079fb9695e5SSatish Balay   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_BINARY,&isbinary);CHKERRQ(ierr);
108032077d6dSBarry Smith   if (iascii || isdraw || issocket || isbinary) {
10817b2a1423SBarry Smith     ierr = MatView_MPIBAIJ_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr);
10825cd90555SBarry Smith   } else {
108365e19b50SBarry Smith     SETERRQ1(((PetscObject)mat)->comm,PETSC_ERR_SUP,"Viewer type %s not supported by MPIBAIJ matrices",((PetscObject)viewer)->type_name);
108457b952d6SSatish Balay   }
10853a40ed3dSBarry Smith   PetscFunctionReturn(0);
108657b952d6SSatish Balay }
108757b952d6SSatish Balay 
10884a2ae208SSatish Balay #undef __FUNCT__
10894a2ae208SSatish Balay #define __FUNCT__ "MatDestroy_MPIBAIJ"
1090dfbe8321SBarry Smith PetscErrorCode MatDestroy_MPIBAIJ(Mat mat)
109179bdfe76SSatish Balay {
109279bdfe76SSatish Balay   Mat_MPIBAIJ    *baij = (Mat_MPIBAIJ*)mat->data;
1093dfbe8321SBarry Smith   PetscErrorCode ierr;
109479bdfe76SSatish Balay 
1095d64ed03dSBarry Smith   PetscFunctionBegin;
1096aa482453SBarry Smith #if defined(PETSC_USE_LOG)
1097d0f46423SBarry Smith   PetscLogObjectState((PetscObject)mat,"Rows=%D,Cols=%D",mat->rmap->N,mat->cmap->N);
109879bdfe76SSatish Balay #endif
10998798bf22SSatish Balay   ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr);
11008798bf22SSatish Balay   ierr = MatStashDestroy_Private(&mat->bstash);CHKERRQ(ierr);
110179bdfe76SSatish Balay   ierr = MatDestroy(baij->A);CHKERRQ(ierr);
110279bdfe76SSatish Balay   ierr = MatDestroy(baij->B);CHKERRQ(ierr);
1103aa482453SBarry Smith #if defined (PETSC_USE_CTABLE)
11049c666560SBarry Smith   if (baij->colmap) {ierr = PetscTableDestroy(baij->colmap);CHKERRQ(ierr);}
110548e59246SSatish Balay #else
110605b42c5fSBarry Smith   ierr = PetscFree(baij->colmap);CHKERRQ(ierr);
110748e59246SSatish Balay #endif
110805b42c5fSBarry Smith   ierr = PetscFree(baij->garray);CHKERRQ(ierr);
1109606d414cSSatish Balay   if (baij->lvec)   {ierr = VecDestroy(baij->lvec);CHKERRQ(ierr);}
1110606d414cSSatish Balay   if (baij->Mvctx)  {ierr = VecScatterDestroy(baij->Mvctx);CHKERRQ(ierr);}
1111fca92195SBarry Smith   ierr = PetscFree2(baij->rowvalues,baij->rowindices);CHKERRQ(ierr);
111205b42c5fSBarry Smith   ierr = PetscFree(baij->barray);CHKERRQ(ierr);
1113fca92195SBarry Smith   ierr = PetscFree2(baij->hd,baij->ht);CHKERRQ(ierr);
1114899cda47SBarry Smith   ierr = PetscFree(baij->rangebs);CHKERRQ(ierr);
1115606d414cSSatish Balay   ierr = PetscFree(baij);CHKERRQ(ierr);
1116901853e0SKris Buschelman 
1117dbd8c25aSHong Zhang   ierr = PetscObjectChangeTypeName((PetscObject)mat,0);CHKERRQ(ierr);
1118901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatStoreValues_C","",PETSC_NULL);CHKERRQ(ierr);
1119901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatRetrieveValues_C","",PETSC_NULL);CHKERRQ(ierr);
1120901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatGetDiagonalBlock_C","",PETSC_NULL);CHKERRQ(ierr);
1121901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPIBAIJSetPreallocation_C","",PETSC_NULL);CHKERRQ(ierr);
1122aac34f13SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPIBAIJSetPreallocationCSR_C","",PETSC_NULL);CHKERRQ(ierr);
1123901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDiagonalScaleLocal_C","",PETSC_NULL);CHKERRQ(ierr);
1124901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatSetHashTableFactor_C","",PETSC_NULL);CHKERRQ(ierr);
11253a40ed3dSBarry Smith   PetscFunctionReturn(0);
112679bdfe76SSatish Balay }
112779bdfe76SSatish Balay 
11284a2ae208SSatish Balay #undef __FUNCT__
11294a2ae208SSatish Balay #define __FUNCT__ "MatMult_MPIBAIJ"
1130dfbe8321SBarry Smith PetscErrorCode MatMult_MPIBAIJ(Mat A,Vec xx,Vec yy)
1131cee3aa6bSSatish Balay {
1132cee3aa6bSSatish Balay   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)A->data;
1133dfbe8321SBarry Smith   PetscErrorCode ierr;
1134b24ad042SBarry Smith   PetscInt       nt;
1135cee3aa6bSSatish Balay 
1136d64ed03dSBarry Smith   PetscFunctionBegin;
1137e1311b90SBarry Smith   ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr);
1138e7e72b3dSBarry Smith   if (nt != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx");
1139e1311b90SBarry Smith   ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr);
1140e7e72b3dSBarry Smith   if (nt != A->rmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible parition of A and yy");
1141ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1142f830108cSBarry Smith   ierr = (*a->A->ops->mult)(a->A,xx,yy);CHKERRQ(ierr);
1143ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1144f830108cSBarry Smith   ierr = (*a->B->ops->multadd)(a->B,a->lvec,yy,yy);CHKERRQ(ierr);
11453a40ed3dSBarry Smith   PetscFunctionReturn(0);
1146cee3aa6bSSatish Balay }
1147cee3aa6bSSatish Balay 
11484a2ae208SSatish Balay #undef __FUNCT__
11494a2ae208SSatish Balay #define __FUNCT__ "MatMultAdd_MPIBAIJ"
1150dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPIBAIJ(Mat A,Vec xx,Vec yy,Vec zz)
1151cee3aa6bSSatish Balay {
1152cee3aa6bSSatish Balay   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)A->data;
1153dfbe8321SBarry Smith   PetscErrorCode ierr;
1154d64ed03dSBarry Smith 
1155d64ed03dSBarry Smith   PetscFunctionBegin;
1156ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1157f830108cSBarry Smith   ierr = (*a->A->ops->multadd)(a->A,xx,yy,zz);CHKERRQ(ierr);
1158ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1159f830108cSBarry Smith   ierr = (*a->B->ops->multadd)(a->B,a->lvec,zz,zz);CHKERRQ(ierr);
11603a40ed3dSBarry Smith   PetscFunctionReturn(0);
1161cee3aa6bSSatish Balay }
1162cee3aa6bSSatish Balay 
11634a2ae208SSatish Balay #undef __FUNCT__
11644a2ae208SSatish Balay #define __FUNCT__ "MatMultTranspose_MPIBAIJ"
1165dfbe8321SBarry Smith PetscErrorCode MatMultTranspose_MPIBAIJ(Mat A,Vec xx,Vec yy)
1166cee3aa6bSSatish Balay {
1167cee3aa6bSSatish Balay   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)A->data;
1168dfbe8321SBarry Smith   PetscErrorCode ierr;
1169a5ff213dSBarry Smith   PetscTruth     merged;
1170cee3aa6bSSatish Balay 
1171d64ed03dSBarry Smith   PetscFunctionBegin;
1172a5ff213dSBarry Smith   ierr = VecScatterGetMerged(a->Mvctx,&merged);CHKERRQ(ierr);
1173cee3aa6bSSatish Balay   /* do nondiagonal part */
11747c922b88SBarry Smith   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr);
1175a5ff213dSBarry Smith   if (!merged) {
1176cee3aa6bSSatish Balay     /* send it on its way */
1177ca9f406cSSatish Balay     ierr = VecScatterBegin(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
1178cee3aa6bSSatish Balay     /* do local part */
11797c922b88SBarry Smith     ierr = (*a->A->ops->multtranspose)(a->A,xx,yy);CHKERRQ(ierr);
1180cee3aa6bSSatish Balay     /* receive remote parts: note this assumes the values are not actually */
1181a5ff213dSBarry Smith     /* inserted in yy until the next line */
1182ca9f406cSSatish Balay     ierr = VecScatterEnd(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
1183a5ff213dSBarry Smith   } else {
1184a5ff213dSBarry Smith     /* do local part */
1185a5ff213dSBarry Smith     ierr = (*a->A->ops->multtranspose)(a->A,xx,yy);CHKERRQ(ierr);
1186a5ff213dSBarry Smith     /* send it on its way */
1187ca9f406cSSatish Balay     ierr = VecScatterBegin(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
1188a5ff213dSBarry Smith     /* values actually were received in the Begin() but we need to call this nop */
1189ca9f406cSSatish Balay     ierr = VecScatterEnd(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
1190a5ff213dSBarry Smith   }
11913a40ed3dSBarry Smith   PetscFunctionReturn(0);
1192cee3aa6bSSatish Balay }
1193cee3aa6bSSatish Balay 
11944a2ae208SSatish Balay #undef __FUNCT__
11954a2ae208SSatish Balay #define __FUNCT__ "MatMultTransposeAdd_MPIBAIJ"
1196dfbe8321SBarry Smith PetscErrorCode MatMultTransposeAdd_MPIBAIJ(Mat A,Vec xx,Vec yy,Vec zz)
1197cee3aa6bSSatish Balay {
1198cee3aa6bSSatish Balay   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)A->data;
1199dfbe8321SBarry Smith   PetscErrorCode ierr;
1200cee3aa6bSSatish Balay 
1201d64ed03dSBarry Smith   PetscFunctionBegin;
1202cee3aa6bSSatish Balay   /* do nondiagonal part */
12037c922b88SBarry Smith   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr);
1204cee3aa6bSSatish Balay   /* send it on its way */
1205ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
1206cee3aa6bSSatish Balay   /* do local part */
12077c922b88SBarry Smith   ierr = (*a->A->ops->multtransposeadd)(a->A,xx,yy,zz);CHKERRQ(ierr);
1208cee3aa6bSSatish Balay   /* receive remote parts: note this assumes the values are not actually */
1209cee3aa6bSSatish Balay   /* inserted in yy until the next line, which is true for my implementation*/
1210cee3aa6bSSatish Balay   /* but is not perhaps always true. */
1211ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
12123a40ed3dSBarry Smith   PetscFunctionReturn(0);
1213cee3aa6bSSatish Balay }
1214cee3aa6bSSatish Balay 
1215cee3aa6bSSatish Balay /*
1216cee3aa6bSSatish Balay   This only works correctly for square matrices where the subblock A->A is the
1217cee3aa6bSSatish Balay    diagonal block
1218cee3aa6bSSatish Balay */
12194a2ae208SSatish Balay #undef __FUNCT__
12204a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonal_MPIBAIJ"
1221dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_MPIBAIJ(Mat A,Vec v)
1222cee3aa6bSSatish Balay {
1223cee3aa6bSSatish Balay   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)A->data;
1224dfbe8321SBarry Smith   PetscErrorCode ierr;
1225d64ed03dSBarry Smith 
1226d64ed03dSBarry Smith   PetscFunctionBegin;
1227e32f2f54SBarry Smith   if (A->rmap->N != A->cmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block");
12283a40ed3dSBarry Smith   ierr = MatGetDiagonal(a->A,v);CHKERRQ(ierr);
12293a40ed3dSBarry Smith   PetscFunctionReturn(0);
1230cee3aa6bSSatish Balay }
1231cee3aa6bSSatish Balay 
12324a2ae208SSatish Balay #undef __FUNCT__
12334a2ae208SSatish Balay #define __FUNCT__ "MatScale_MPIBAIJ"
1234f4df32b1SMatthew Knepley PetscErrorCode MatScale_MPIBAIJ(Mat A,PetscScalar aa)
1235cee3aa6bSSatish Balay {
1236cee3aa6bSSatish Balay   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)A->data;
1237dfbe8321SBarry Smith   PetscErrorCode ierr;
1238d64ed03dSBarry Smith 
1239d64ed03dSBarry Smith   PetscFunctionBegin;
1240f4df32b1SMatthew Knepley   ierr = MatScale(a->A,aa);CHKERRQ(ierr);
1241f4df32b1SMatthew Knepley   ierr = MatScale(a->B,aa);CHKERRQ(ierr);
12423a40ed3dSBarry Smith   PetscFunctionReturn(0);
1243cee3aa6bSSatish Balay }
1244026e39d0SSatish Balay 
12454a2ae208SSatish Balay #undef __FUNCT__
12464a2ae208SSatish Balay #define __FUNCT__ "MatGetRow_MPIBAIJ"
1247b24ad042SBarry Smith PetscErrorCode MatGetRow_MPIBAIJ(Mat matin,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v)
1248acdf5bf4SSatish Balay {
1249acdf5bf4SSatish Balay   Mat_MPIBAIJ    *mat = (Mat_MPIBAIJ*)matin->data;
125087828ca2SBarry Smith   PetscScalar    *vworkA,*vworkB,**pvA,**pvB,*v_p;
12516849ba73SBarry Smith   PetscErrorCode ierr;
1252d0f46423SBarry Smith   PetscInt       bs = matin->rmap->bs,bs2 = mat->bs2,i,*cworkA,*cworkB,**pcA,**pcB;
1253d0f46423SBarry Smith   PetscInt       nztot,nzA,nzB,lrow,brstart = matin->rmap->rstart,brend = matin->rmap->rend;
1254899cda47SBarry Smith   PetscInt       *cmap,*idx_p,cstart = mat->cstartbs;
1255acdf5bf4SSatish Balay 
1256d64ed03dSBarry Smith   PetscFunctionBegin;
1257e7e72b3dSBarry Smith   if (row < brstart || row >= brend) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local rows");
1258e32f2f54SBarry Smith   if (mat->getrowactive) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Already active");
1259acdf5bf4SSatish Balay   mat->getrowactive = PETSC_TRUE;
1260acdf5bf4SSatish Balay 
1261acdf5bf4SSatish Balay   if (!mat->rowvalues && (idx || v)) {
1262acdf5bf4SSatish Balay     /*
1263acdf5bf4SSatish Balay         allocate enough space to hold information from the longest row.
1264acdf5bf4SSatish Balay     */
1265acdf5bf4SSatish Balay     Mat_SeqBAIJ *Aa = (Mat_SeqBAIJ*)mat->A->data,*Ba = (Mat_SeqBAIJ*)mat->B->data;
1266b24ad042SBarry Smith     PetscInt     max = 1,mbs = mat->mbs,tmp;
1267bd16c2feSSatish Balay     for (i=0; i<mbs; i++) {
1268acdf5bf4SSatish Balay       tmp = Aa->i[i+1] - Aa->i[i] + Ba->i[i+1] - Ba->i[i];
1269acdf5bf4SSatish Balay       if (max < tmp) { max = tmp; }
1270acdf5bf4SSatish Balay     }
1271fca92195SBarry Smith     ierr = PetscMalloc2(max*bs2,PetscScalar,&mat->rowvalues,max*bs2,PetscInt,&mat->rowindices);CHKERRQ(ierr);
1272acdf5bf4SSatish Balay   }
1273d9d09a02SSatish Balay   lrow = row - brstart;
1274acdf5bf4SSatish Balay 
1275acdf5bf4SSatish Balay   pvA = &vworkA; pcA = &cworkA; pvB = &vworkB; pcB = &cworkB;
1276acdf5bf4SSatish Balay   if (!v)   {pvA = 0; pvB = 0;}
1277acdf5bf4SSatish Balay   if (!idx) {pcA = 0; if (!v) pcB = 0;}
1278f830108cSBarry Smith   ierr = (*mat->A->ops->getrow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr);
1279f830108cSBarry Smith   ierr = (*mat->B->ops->getrow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr);
1280acdf5bf4SSatish Balay   nztot = nzA + nzB;
1281acdf5bf4SSatish Balay 
1282acdf5bf4SSatish Balay   cmap  = mat->garray;
1283acdf5bf4SSatish Balay   if (v  || idx) {
1284acdf5bf4SSatish Balay     if (nztot) {
1285acdf5bf4SSatish Balay       /* Sort by increasing column numbers, assuming A and B already sorted */
1286b24ad042SBarry Smith       PetscInt imark = -1;
1287acdf5bf4SSatish Balay       if (v) {
1288acdf5bf4SSatish Balay         *v = v_p = mat->rowvalues;
1289acdf5bf4SSatish Balay         for (i=0; i<nzB; i++) {
1290d9d09a02SSatish Balay           if (cmap[cworkB[i]/bs] < cstart)   v_p[i] = vworkB[i];
1291acdf5bf4SSatish Balay           else break;
1292acdf5bf4SSatish Balay         }
1293acdf5bf4SSatish Balay         imark = i;
1294acdf5bf4SSatish Balay         for (i=0; i<nzA; i++)     v_p[imark+i] = vworkA[i];
1295acdf5bf4SSatish Balay         for (i=imark; i<nzB; i++) v_p[nzA+i]   = vworkB[i];
1296acdf5bf4SSatish Balay       }
1297acdf5bf4SSatish Balay       if (idx) {
1298acdf5bf4SSatish Balay         *idx = idx_p = mat->rowindices;
1299acdf5bf4SSatish Balay         if (imark > -1) {
1300acdf5bf4SSatish Balay           for (i=0; i<imark; i++) {
1301bd16c2feSSatish Balay             idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs;
1302acdf5bf4SSatish Balay           }
1303acdf5bf4SSatish Balay         } else {
1304acdf5bf4SSatish Balay           for (i=0; i<nzB; i++) {
1305d9d09a02SSatish Balay             if (cmap[cworkB[i]/bs] < cstart)
1306d9d09a02SSatish Balay               idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ;
1307acdf5bf4SSatish Balay             else break;
1308acdf5bf4SSatish Balay           }
1309acdf5bf4SSatish Balay           imark = i;
1310acdf5bf4SSatish Balay         }
1311d9d09a02SSatish Balay         for (i=0; i<nzA; i++)     idx_p[imark+i] = cstart*bs + cworkA[i];
1312d9d09a02SSatish Balay         for (i=imark; i<nzB; i++) idx_p[nzA+i]   = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ;
1313acdf5bf4SSatish Balay       }
1314d64ed03dSBarry Smith     } else {
1315d212a18eSSatish Balay       if (idx) *idx = 0;
1316d212a18eSSatish Balay       if (v)   *v   = 0;
1317d212a18eSSatish Balay     }
1318acdf5bf4SSatish Balay   }
1319acdf5bf4SSatish Balay   *nz = nztot;
1320f830108cSBarry Smith   ierr = (*mat->A->ops->restorerow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr);
1321f830108cSBarry Smith   ierr = (*mat->B->ops->restorerow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr);
13223a40ed3dSBarry Smith   PetscFunctionReturn(0);
1323acdf5bf4SSatish Balay }
1324acdf5bf4SSatish Balay 
13254a2ae208SSatish Balay #undef __FUNCT__
13264a2ae208SSatish Balay #define __FUNCT__ "MatRestoreRow_MPIBAIJ"
1327b24ad042SBarry Smith PetscErrorCode MatRestoreRow_MPIBAIJ(Mat mat,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v)
1328acdf5bf4SSatish Balay {
1329acdf5bf4SSatish Balay   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data;
1330d64ed03dSBarry Smith 
1331d64ed03dSBarry Smith   PetscFunctionBegin;
1332e7e72b3dSBarry Smith   if (!baij->getrowactive) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"MatGetRow not called");
1333acdf5bf4SSatish Balay   baij->getrowactive = PETSC_FALSE;
13343a40ed3dSBarry Smith   PetscFunctionReturn(0);
1335acdf5bf4SSatish Balay }
1336acdf5bf4SSatish Balay 
13374a2ae208SSatish Balay #undef __FUNCT__
13384a2ae208SSatish Balay #define __FUNCT__ "MatZeroEntries_MPIBAIJ"
1339dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_MPIBAIJ(Mat A)
134058667388SSatish Balay {
134158667388SSatish Balay   Mat_MPIBAIJ    *l = (Mat_MPIBAIJ*)A->data;
1342dfbe8321SBarry Smith   PetscErrorCode ierr;
1343d64ed03dSBarry Smith 
1344d64ed03dSBarry Smith   PetscFunctionBegin;
134558667388SSatish Balay   ierr = MatZeroEntries(l->A);CHKERRQ(ierr);
134658667388SSatish Balay   ierr = MatZeroEntries(l->B);CHKERRQ(ierr);
13473a40ed3dSBarry Smith   PetscFunctionReturn(0);
134858667388SSatish Balay }
13490ac07820SSatish Balay 
13504a2ae208SSatish Balay #undef __FUNCT__
13514a2ae208SSatish Balay #define __FUNCT__ "MatGetInfo_MPIBAIJ"
1352dfbe8321SBarry Smith PetscErrorCode MatGetInfo_MPIBAIJ(Mat matin,MatInfoType flag,MatInfo *info)
13530ac07820SSatish Balay {
13544e220ebcSLois Curfman McInnes   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)matin->data;
13554e220ebcSLois Curfman McInnes   Mat            A = a->A,B = a->B;
1356dfbe8321SBarry Smith   PetscErrorCode ierr;
1357329f5518SBarry Smith   PetscReal      isend[5],irecv[5];
13580ac07820SSatish Balay 
1359d64ed03dSBarry Smith   PetscFunctionBegin;
1360d0f46423SBarry Smith   info->block_size     = (PetscReal)matin->rmap->bs;
13614e220ebcSLois Curfman McInnes   ierr = MatGetInfo(A,MAT_LOCAL,info);CHKERRQ(ierr);
13620e4b21beSBarry Smith   isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded;
1363de87f314SBarry Smith   isend[3] = info->memory;  isend[4] = info->mallocs;
13644e220ebcSLois Curfman McInnes   ierr = MatGetInfo(B,MAT_LOCAL,info);CHKERRQ(ierr);
13650e4b21beSBarry Smith   isend[0] += info->nz_used; isend[1] += info->nz_allocated; isend[2] += info->nz_unneeded;
1366de87f314SBarry Smith   isend[3] += info->memory;  isend[4] += info->mallocs;
13670ac07820SSatish Balay   if (flag == MAT_LOCAL) {
13684e220ebcSLois Curfman McInnes     info->nz_used      = isend[0];
13694e220ebcSLois Curfman McInnes     info->nz_allocated = isend[1];
13704e220ebcSLois Curfman McInnes     info->nz_unneeded  = isend[2];
13714e220ebcSLois Curfman McInnes     info->memory       = isend[3];
13724e220ebcSLois Curfman McInnes     info->mallocs      = isend[4];
13730ac07820SSatish Balay   } else if (flag == MAT_GLOBAL_MAX) {
13747adad957SLisandro Dalcin     ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_MAX,((PetscObject)matin)->comm);CHKERRQ(ierr);
13754e220ebcSLois Curfman McInnes     info->nz_used      = irecv[0];
13764e220ebcSLois Curfman McInnes     info->nz_allocated = irecv[1];
13774e220ebcSLois Curfman McInnes     info->nz_unneeded  = irecv[2];
13784e220ebcSLois Curfman McInnes     info->memory       = irecv[3];
13794e220ebcSLois Curfman McInnes     info->mallocs      = irecv[4];
13800ac07820SSatish Balay   } else if (flag == MAT_GLOBAL_SUM) {
13817adad957SLisandro Dalcin     ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_SUM,((PetscObject)matin)->comm);CHKERRQ(ierr);
13824e220ebcSLois Curfman McInnes     info->nz_used      = irecv[0];
13834e220ebcSLois Curfman McInnes     info->nz_allocated = irecv[1];
13844e220ebcSLois Curfman McInnes     info->nz_unneeded  = irecv[2];
13854e220ebcSLois Curfman McInnes     info->memory       = irecv[3];
13864e220ebcSLois Curfman McInnes     info->mallocs      = irecv[4];
1387d41123aaSBarry Smith   } else {
138865e19b50SBarry Smith     SETERRQ1(((PetscObject)matin)->comm,PETSC_ERR_ARG_WRONG,"Unknown MatInfoType argument %d",(int)flag);
13890ac07820SSatish Balay   }
13904e220ebcSLois Curfman McInnes   info->fill_ratio_given  = 0; /* no parallel LU/ILU/Cholesky */
13914e220ebcSLois Curfman McInnes   info->fill_ratio_needed = 0;
13924e220ebcSLois Curfman McInnes   info->factor_mallocs    = 0;
13933a40ed3dSBarry Smith   PetscFunctionReturn(0);
13940ac07820SSatish Balay }
13950ac07820SSatish Balay 
13964a2ae208SSatish Balay #undef __FUNCT__
13974a2ae208SSatish Balay #define __FUNCT__ "MatSetOption_MPIBAIJ"
13984e0d8c25SBarry Smith PetscErrorCode MatSetOption_MPIBAIJ(Mat A,MatOption op,PetscTruth flg)
139958667388SSatish Balay {
140058667388SSatish Balay   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)A->data;
1401dfbe8321SBarry Smith   PetscErrorCode ierr;
140258667388SSatish Balay 
1403d64ed03dSBarry Smith   PetscFunctionBegin;
140412c028f9SKris Buschelman   switch (op) {
1405512a5fc5SBarry Smith   case MAT_NEW_NONZERO_LOCATIONS:
140612c028f9SKris Buschelman   case MAT_NEW_NONZERO_ALLOCATION_ERR:
140728b2fa4aSMatthew Knepley   case MAT_UNUSED_NONZERO_LOCATION_ERR:
1408a9817697SBarry Smith   case MAT_KEEP_NONZERO_PATTERN:
140912c028f9SKris Buschelman   case MAT_NEW_NONZERO_LOCATION_ERR:
14104e0d8c25SBarry Smith     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
14114e0d8c25SBarry Smith     ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr);
141212c028f9SKris Buschelman     break;
141312c028f9SKris Buschelman   case MAT_ROW_ORIENTED:
14144e0d8c25SBarry Smith     a->roworiented = flg;
14154e0d8c25SBarry Smith     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
14164e0d8c25SBarry Smith     ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr);
141712c028f9SKris Buschelman     break;
14184e0d8c25SBarry Smith   case MAT_NEW_DIAGONALS:
1419290bbb0aSBarry Smith     ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr);
142012c028f9SKris Buschelman     break;
142112c028f9SKris Buschelman   case MAT_IGNORE_OFF_PROC_ENTRIES:
14224e0d8c25SBarry Smith     a->donotstash = flg;
142312c028f9SKris Buschelman     break;
142412c028f9SKris Buschelman   case MAT_USE_HASH_TABLE:
14254e0d8c25SBarry Smith     a->ht_flag = flg;
142612c028f9SKris Buschelman     break;
142777e54ba9SKris Buschelman   case MAT_SYMMETRIC:
142877e54ba9SKris Buschelman   case MAT_STRUCTURALLY_SYMMETRIC:
14292188ac68SBarry Smith   case MAT_HERMITIAN:
14302188ac68SBarry Smith   case MAT_SYMMETRY_ETERNAL:
14314e0d8c25SBarry Smith     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
143277e54ba9SKris Buschelman     break;
143312c028f9SKris Buschelman   default:
143465e19b50SBarry Smith     SETERRQ1(((PetscObject)A)->comm,PETSC_ERR_SUP,"unknown option %d",op);
1435d64ed03dSBarry Smith   }
14363a40ed3dSBarry Smith   PetscFunctionReturn(0);
143758667388SSatish Balay }
143858667388SSatish Balay 
14394a2ae208SSatish Balay #undef __FUNCT__
14404a2ae208SSatish Balay #define __FUNCT__ "MatTranspose_MPIBAIJ("
1441fc4dec0aSBarry Smith PetscErrorCode MatTranspose_MPIBAIJ(Mat A,MatReuse reuse,Mat *matout)
14420ac07820SSatish Balay {
14430ac07820SSatish Balay   Mat_MPIBAIJ    *baij = (Mat_MPIBAIJ*)A->data;
14440ac07820SSatish Balay   Mat_SeqBAIJ    *Aloc;
14450ac07820SSatish Balay   Mat            B;
1446dfbe8321SBarry Smith   PetscErrorCode ierr;
1447d0f46423SBarry Smith   PetscInt       M=A->rmap->N,N=A->cmap->N,*ai,*aj,i,*rvals,j,k,col;
1448d0f46423SBarry Smith   PetscInt       bs=A->rmap->bs,mbs=baij->mbs;
14493eda8832SBarry Smith   MatScalar      *a;
14500ac07820SSatish Balay 
1451d64ed03dSBarry Smith   PetscFunctionBegin;
1452e7e72b3dSBarry Smith   if (reuse == MAT_REUSE_MATRIX && A == *matout && M != N) SETERRQ(((PetscObject)A)->comm,PETSC_ERR_ARG_SIZ,"Square matrix only for in-place");
1453fc4dec0aSBarry Smith   if (reuse == MAT_INITIAL_MATRIX || *matout == A) {
14547adad957SLisandro Dalcin     ierr = MatCreate(((PetscObject)A)->comm,&B);CHKERRQ(ierr);
1455d0f46423SBarry Smith     ierr = MatSetSizes(B,A->cmap->n,A->rmap->n,N,M);CHKERRQ(ierr);
14567adad957SLisandro Dalcin     ierr = MatSetType(B,((PetscObject)A)->type_name);CHKERRQ(ierr);
1457d0f46423SBarry Smith     ierr = MatMPIBAIJSetPreallocation(B,A->rmap->bs,0,PETSC_NULL,0,PETSC_NULL);CHKERRQ(ierr);
1458fc4dec0aSBarry Smith   } else {
1459fc4dec0aSBarry Smith     B = *matout;
1460fc4dec0aSBarry Smith   }
14610ac07820SSatish Balay 
14620ac07820SSatish Balay   /* copy over the A part */
14630ac07820SSatish Balay   Aloc = (Mat_SeqBAIJ*)baij->A->data;
14640ac07820SSatish Balay   ai   = Aloc->i; aj = Aloc->j; a = Aloc->a;
1465b24ad042SBarry Smith   ierr = PetscMalloc(bs*sizeof(PetscInt),&rvals);CHKERRQ(ierr);
14660ac07820SSatish Balay 
14670ac07820SSatish Balay   for (i=0; i<mbs; i++) {
1468899cda47SBarry Smith     rvals[0] = bs*(baij->rstartbs + i);
14690ac07820SSatish Balay     for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; }
14700ac07820SSatish Balay     for (j=ai[i]; j<ai[i+1]; j++) {
1471899cda47SBarry Smith       col = (baij->cstartbs+aj[j])*bs;
14720ac07820SSatish Balay       for (k=0; k<bs; k++) {
147397e5c40aSBarry Smith         ierr = MatSetValues_MPIBAIJ(B,1,&col,bs,rvals,a,INSERT_VALUES);CHKERRQ(ierr);
14740ac07820SSatish Balay         col++; a += bs;
14750ac07820SSatish Balay       }
14760ac07820SSatish Balay     }
14770ac07820SSatish Balay   }
14780ac07820SSatish Balay   /* copy over the B part */
14790ac07820SSatish Balay   Aloc = (Mat_SeqBAIJ*)baij->B->data;
14800ac07820SSatish Balay   ai = Aloc->i; aj = Aloc->j; a = Aloc->a;
14810ac07820SSatish Balay   for (i=0; i<mbs; i++) {
1482899cda47SBarry Smith     rvals[0] = bs*(baij->rstartbs + i);
14830ac07820SSatish Balay     for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; }
14840ac07820SSatish Balay     for (j=ai[i]; j<ai[i+1]; j++) {
14850ac07820SSatish Balay       col = baij->garray[aj[j]]*bs;
14860ac07820SSatish Balay       for (k=0; k<bs; k++) {
148797e5c40aSBarry Smith         ierr = MatSetValues_MPIBAIJ(B,1,&col,bs,rvals,a,INSERT_VALUES);CHKERRQ(ierr);
14880ac07820SSatish Balay         col++; a += bs;
14890ac07820SSatish Balay       }
14900ac07820SSatish Balay     }
14910ac07820SSatish Balay   }
1492606d414cSSatish Balay   ierr = PetscFree(rvals);CHKERRQ(ierr);
14930ac07820SSatish Balay   ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
14940ac07820SSatish Balay   ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
14950ac07820SSatish Balay 
1496815cbec1SBarry Smith   if (reuse == MAT_INITIAL_MATRIX || *matout != A) {
14970ac07820SSatish Balay     *matout = B;
14980ac07820SSatish Balay   } else {
1499273d9f13SBarry Smith     ierr = MatHeaderCopy(A,B);CHKERRQ(ierr);
15000ac07820SSatish Balay   }
15013a40ed3dSBarry Smith   PetscFunctionReturn(0);
15020ac07820SSatish Balay }
15030e95ebc0SSatish Balay 
15044a2ae208SSatish Balay #undef __FUNCT__
15054a2ae208SSatish Balay #define __FUNCT__ "MatDiagonalScale_MPIBAIJ"
1506dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_MPIBAIJ(Mat mat,Vec ll,Vec rr)
15070e95ebc0SSatish Balay {
150836c4a09eSSatish Balay   Mat_MPIBAIJ    *baij = (Mat_MPIBAIJ*)mat->data;
150936c4a09eSSatish Balay   Mat            a = baij->A,b = baij->B;
1510dfbe8321SBarry Smith   PetscErrorCode ierr;
1511b24ad042SBarry Smith   PetscInt       s1,s2,s3;
15120e95ebc0SSatish Balay 
1513d64ed03dSBarry Smith   PetscFunctionBegin;
151436c4a09eSSatish Balay   ierr = MatGetLocalSize(mat,&s2,&s3);CHKERRQ(ierr);
151536c4a09eSSatish Balay   if (rr) {
151636c4a09eSSatish Balay     ierr = VecGetLocalSize(rr,&s1);CHKERRQ(ierr);
1517e32f2f54SBarry Smith     if (s1!=s3) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"right vector non-conforming local size");
151836c4a09eSSatish Balay     /* Overlap communication with computation. */
1519ca9f406cSSatish Balay     ierr = VecScatterBegin(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
152036c4a09eSSatish Balay   }
15210e95ebc0SSatish Balay   if (ll) {
15220e95ebc0SSatish Balay     ierr = VecGetLocalSize(ll,&s1);CHKERRQ(ierr);
1523e32f2f54SBarry Smith     if (s1!=s2) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"left vector non-conforming local size");
1524a21fb8cbSBarry Smith     ierr = (*b->ops->diagonalscale)(b,ll,PETSC_NULL);CHKERRQ(ierr);
15250e95ebc0SSatish Balay   }
152636c4a09eSSatish Balay   /* scale  the diagonal block */
152736c4a09eSSatish Balay   ierr = (*a->ops->diagonalscale)(a,ll,rr);CHKERRQ(ierr);
152836c4a09eSSatish Balay 
152936c4a09eSSatish Balay   if (rr) {
153036c4a09eSSatish Balay     /* Do a scatter end and then right scale the off-diagonal block */
1531ca9f406cSSatish Balay     ierr = VecScatterEnd(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1532a21fb8cbSBarry Smith     ierr = (*b->ops->diagonalscale)(b,PETSC_NULL,baij->lvec);CHKERRQ(ierr);
153336c4a09eSSatish Balay   }
153436c4a09eSSatish Balay 
15353a40ed3dSBarry Smith   PetscFunctionReturn(0);
15360e95ebc0SSatish Balay }
15370e95ebc0SSatish Balay 
15384a2ae208SSatish Balay #undef __FUNCT__
15394a2ae208SSatish Balay #define __FUNCT__ "MatZeroRows_MPIBAIJ"
1540f4df32b1SMatthew Knepley PetscErrorCode MatZeroRows_MPIBAIJ(Mat A,PetscInt N,const PetscInt rows[],PetscScalar diag)
15410ac07820SSatish Balay {
15420ac07820SSatish Balay   Mat_MPIBAIJ    *l = (Mat_MPIBAIJ*)A->data;
15436849ba73SBarry Smith   PetscErrorCode ierr;
1544b24ad042SBarry Smith   PetscMPIInt    imdex,size = l->size,n,rank = l->rank;
1545d0f46423SBarry Smith   PetscInt       i,*owners = A->rmap->range;
1546b24ad042SBarry Smith   PetscInt       *nprocs,j,idx,nsends,row;
1547b24ad042SBarry Smith   PetscInt       nmax,*svalues,*starts,*owner,nrecvs;
15487adad957SLisandro Dalcin   PetscInt       *rvalues,tag = ((PetscObject)A)->tag,count,base,slen,*source,lastidx = -1;
1549d0f46423SBarry Smith   PetscInt       *lens,*lrows,*values,rstart_bs=A->rmap->rstart;
15507adad957SLisandro Dalcin   MPI_Comm       comm = ((PetscObject)A)->comm;
15510ac07820SSatish Balay   MPI_Request    *send_waits,*recv_waits;
15520ac07820SSatish Balay   MPI_Status     recv_status,*send_status;
15536543fbbaSBarry Smith #if defined(PETSC_DEBUG)
15546543fbbaSBarry Smith   PetscTruth     found = PETSC_FALSE;
15556543fbbaSBarry Smith #endif
15560ac07820SSatish Balay 
1557d64ed03dSBarry Smith   PetscFunctionBegin;
15580ac07820SSatish Balay   /*  first count number of contributors to each processor */
1559b24ad042SBarry Smith   ierr  = PetscMalloc(2*size*sizeof(PetscInt),&nprocs);CHKERRQ(ierr);
1560b24ad042SBarry Smith   ierr  = PetscMemzero(nprocs,2*size*sizeof(PetscInt));CHKERRQ(ierr);
1561b24ad042SBarry Smith   ierr  = PetscMalloc((N+1)*sizeof(PetscInt),&owner);CHKERRQ(ierr); /* see note*/
15626543fbbaSBarry Smith   j = 0;
15630ac07820SSatish Balay   for (i=0; i<N; i++) {
15646543fbbaSBarry Smith     if (lastidx > (idx = rows[i])) j = 0;
15656543fbbaSBarry Smith     lastidx = idx;
15666543fbbaSBarry Smith     for (; j<size; j++) {
1567357c27ecSBarry Smith       if (idx >= owners[j] && idx < owners[j+1]) {
15686543fbbaSBarry Smith         nprocs[2*j]++;
15696543fbbaSBarry Smith         nprocs[2*j+1] = 1;
15706543fbbaSBarry Smith         owner[i] = j;
15716543fbbaSBarry Smith #if defined(PETSC_DEBUG)
15726543fbbaSBarry Smith         found = PETSC_TRUE;
15736543fbbaSBarry Smith #endif
15746543fbbaSBarry Smith         break;
15750ac07820SSatish Balay       }
15760ac07820SSatish Balay     }
15776543fbbaSBarry Smith #if defined(PETSC_DEBUG)
1578e32f2f54SBarry Smith     if (!found) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Index out of range");
15796543fbbaSBarry Smith     found = PETSC_FALSE;
15806543fbbaSBarry Smith #endif
15810ac07820SSatish Balay   }
1582c1dc657dSBarry Smith   nsends = 0;  for (i=0; i<size; i++) { nsends += nprocs[2*i+1];}
15830ac07820SSatish Balay 
15840ac07820SSatish Balay   /* inform other processors of number of messages and max length*/
1585c1dc657dSBarry Smith   ierr = PetscMaxSum(comm,nprocs,&nmax,&nrecvs);CHKERRQ(ierr);
15860ac07820SSatish Balay 
15870ac07820SSatish Balay   /* post receives:   */
1588b24ad042SBarry Smith   ierr = PetscMalloc((nrecvs+1)*(nmax+1)*sizeof(PetscInt),&rvalues);CHKERRQ(ierr);
1589b0a32e0cSBarry Smith   ierr = PetscMalloc((nrecvs+1)*sizeof(MPI_Request),&recv_waits);CHKERRQ(ierr);
15900ac07820SSatish Balay   for (i=0; i<nrecvs; i++) {
1591b24ad042SBarry Smith     ierr = MPI_Irecv(rvalues+nmax*i,nmax,MPIU_INT,MPI_ANY_SOURCE,tag,comm,recv_waits+i);CHKERRQ(ierr);
15920ac07820SSatish Balay   }
15930ac07820SSatish Balay 
15940ac07820SSatish Balay   /* do sends:
15950ac07820SSatish Balay      1) starts[i] gives the starting index in svalues for stuff going to
15960ac07820SSatish Balay      the ith processor
15970ac07820SSatish Balay   */
1598b24ad042SBarry Smith   ierr = PetscMalloc((N+1)*sizeof(PetscInt),&svalues);CHKERRQ(ierr);
1599b0a32e0cSBarry Smith   ierr = PetscMalloc((nsends+1)*sizeof(MPI_Request),&send_waits);CHKERRQ(ierr);
1600b24ad042SBarry Smith   ierr = PetscMalloc((size+1)*sizeof(PetscInt),&starts);CHKERRQ(ierr);
16010ac07820SSatish Balay   starts[0]  = 0;
1602c1dc657dSBarry Smith   for (i=1; i<size; i++) { starts[i] = starts[i-1] + nprocs[2*i-2];}
16030ac07820SSatish Balay   for (i=0; i<N; i++) {
16040ac07820SSatish Balay     svalues[starts[owner[i]]++] = rows[i];
16050ac07820SSatish Balay   }
16060ac07820SSatish Balay 
16070ac07820SSatish Balay   starts[0] = 0;
1608c1dc657dSBarry Smith   for (i=1; i<size+1; i++) { starts[i] = starts[i-1] + nprocs[2*i-2];}
16090ac07820SSatish Balay   count = 0;
16100ac07820SSatish Balay   for (i=0; i<size; i++) {
1611c1dc657dSBarry Smith     if (nprocs[2*i+1]) {
1612b24ad042SBarry Smith       ierr = MPI_Isend(svalues+starts[i],nprocs[2*i],MPIU_INT,i,tag,comm,send_waits+count++);CHKERRQ(ierr);
16130ac07820SSatish Balay     }
16140ac07820SSatish Balay   }
1615606d414cSSatish Balay   ierr = PetscFree(starts);CHKERRQ(ierr);
16160ac07820SSatish Balay 
1617357c27ecSBarry Smith   base = owners[rank];
16180ac07820SSatish Balay 
16190ac07820SSatish Balay   /*  wait on receives */
1620fca92195SBarry Smith   ierr   = PetscMalloc2(nrecvs+1,PetscInt,&lens,nrecvs+1,PetscInt,&source);CHKERRQ(ierr);
1621fca92195SBarry Smith   count  = nrecvs;
1622fca92195SBarry Smith   slen = 0;
16230ac07820SSatish Balay   while (count) {
1624ca161407SBarry Smith     ierr = MPI_Waitany(nrecvs,recv_waits,&imdex,&recv_status);CHKERRQ(ierr);
16250ac07820SSatish Balay     /* unpack receives into our local space */
1626b24ad042SBarry Smith     ierr = MPI_Get_count(&recv_status,MPIU_INT,&n);CHKERRQ(ierr);
16270ac07820SSatish Balay     source[imdex]  = recv_status.MPI_SOURCE;
16280ac07820SSatish Balay     lens[imdex]    = n;
16290ac07820SSatish Balay     slen          += n;
16300ac07820SSatish Balay     count--;
16310ac07820SSatish Balay   }
1632606d414cSSatish Balay   ierr = PetscFree(recv_waits);CHKERRQ(ierr);
16330ac07820SSatish Balay 
16340ac07820SSatish Balay   /* move the data into the send scatter */
1635b24ad042SBarry Smith   ierr = PetscMalloc((slen+1)*sizeof(PetscInt),&lrows);CHKERRQ(ierr);
16360ac07820SSatish Balay   count = 0;
16370ac07820SSatish Balay   for (i=0; i<nrecvs; i++) {
16380ac07820SSatish Balay     values = rvalues + i*nmax;
16390ac07820SSatish Balay     for (j=0; j<lens[i]; j++) {
16400ac07820SSatish Balay       lrows[count++] = values[j] - base;
16410ac07820SSatish Balay     }
16420ac07820SSatish Balay   }
1643606d414cSSatish Balay   ierr = PetscFree(rvalues);CHKERRQ(ierr);
1644fca92195SBarry Smith   ierr = PetscFree2(lens,source);CHKERRQ(ierr);
1645606d414cSSatish Balay   ierr = PetscFree(owner);CHKERRQ(ierr);
1646606d414cSSatish Balay   ierr = PetscFree(nprocs);CHKERRQ(ierr);
16470ac07820SSatish Balay 
16480ac07820SSatish Balay   /* actually zap the local rows */
164972dacd9aSBarry Smith   /*
165072dacd9aSBarry Smith         Zero the required rows. If the "diagonal block" of the matrix
1651a8c7a070SBarry Smith      is square and the user wishes to set the diagonal we use separate
165272dacd9aSBarry Smith      code so that MatSetValues() is not called for each diagonal allocating
165372dacd9aSBarry Smith      new memory, thus calling lots of mallocs and slowing things down.
165472dacd9aSBarry Smith 
165572dacd9aSBarry Smith   */
16569c957beeSSatish Balay   /* must zero l->B before l->A because the (diag) case below may put values into l->B*/
1657f4df32b1SMatthew Knepley   ierr = MatZeroRows_SeqBAIJ(l->B,slen,lrows,0.0);CHKERRQ(ierr);
1658d0f46423SBarry Smith   if ((diag != 0.0) && (l->A->rmap->N == l->A->cmap->N)) {
1659f4df32b1SMatthew Knepley     ierr = MatZeroRows_SeqBAIJ(l->A,slen,lrows,diag);CHKERRQ(ierr);
1660f4df32b1SMatthew Knepley   } else if (diag != 0.0) {
1661f4df32b1SMatthew Knepley     ierr = MatZeroRows_SeqBAIJ(l->A,slen,lrows,0.0);CHKERRQ(ierr);
1662e7e72b3dSBarry Smith     if (((Mat_SeqBAIJ*)l->A->data)->nonew) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"MatZeroRows() on rectangular matrices cannot be used with the Mat options \n\
1663512a5fc5SBarry Smith        MAT_NEW_NONZERO_LOCATIONS,MAT_NEW_NONZERO_LOCATION_ERR,MAT_NEW_NONZERO_ALLOCATION_ERR");
1664a07cd24cSSatish Balay     for (i=0; i<slen; i++) {
1665a07cd24cSSatish Balay       row  = lrows[i] + rstart_bs;
1666f4df32b1SMatthew Knepley       ierr = MatSetValues(A,1,&row,1,&row,&diag,INSERT_VALUES);CHKERRQ(ierr);
1667a07cd24cSSatish Balay     }
1668a07cd24cSSatish Balay     ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
1669a07cd24cSSatish Balay     ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
16709c957beeSSatish Balay   } else {
1671f4df32b1SMatthew Knepley     ierr = MatZeroRows_SeqBAIJ(l->A,slen,lrows,0.0);CHKERRQ(ierr);
1672a07cd24cSSatish Balay   }
16739c957beeSSatish Balay 
1674606d414cSSatish Balay   ierr = PetscFree(lrows);CHKERRQ(ierr);
1675a07cd24cSSatish Balay 
16760ac07820SSatish Balay   /* wait on sends */
16770ac07820SSatish Balay   if (nsends) {
167882502324SSatish Balay     ierr = PetscMalloc(nsends*sizeof(MPI_Status),&send_status);CHKERRQ(ierr);
1679ca161407SBarry Smith     ierr = MPI_Waitall(nsends,send_waits,send_status);CHKERRQ(ierr);
1680606d414cSSatish Balay     ierr = PetscFree(send_status);CHKERRQ(ierr);
16810ac07820SSatish Balay   }
1682606d414cSSatish Balay   ierr = PetscFree(send_waits);CHKERRQ(ierr);
1683606d414cSSatish Balay   ierr = PetscFree(svalues);CHKERRQ(ierr);
16840ac07820SSatish Balay 
16853a40ed3dSBarry Smith   PetscFunctionReturn(0);
16860ac07820SSatish Balay }
168772dacd9aSBarry Smith 
16884a2ae208SSatish Balay #undef __FUNCT__
16894a2ae208SSatish Balay #define __FUNCT__ "MatSetUnfactored_MPIBAIJ"
1690dfbe8321SBarry Smith PetscErrorCode MatSetUnfactored_MPIBAIJ(Mat A)
1691bb5a7306SBarry Smith {
1692bb5a7306SBarry Smith   Mat_MPIBAIJ    *a   = (Mat_MPIBAIJ*)A->data;
1693dfbe8321SBarry Smith   PetscErrorCode ierr;
1694d64ed03dSBarry Smith 
1695d64ed03dSBarry Smith   PetscFunctionBegin;
1696bb5a7306SBarry Smith   ierr = MatSetUnfactored(a->A);CHKERRQ(ierr);
16973a40ed3dSBarry Smith   PetscFunctionReturn(0);
1698bb5a7306SBarry Smith }
1699bb5a7306SBarry Smith 
17006849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIBAIJ(Mat,MatDuplicateOption,Mat *);
17010ac07820SSatish Balay 
17024a2ae208SSatish Balay #undef __FUNCT__
17034a2ae208SSatish Balay #define __FUNCT__ "MatEqual_MPIBAIJ"
1704dfbe8321SBarry Smith PetscErrorCode MatEqual_MPIBAIJ(Mat A,Mat B,PetscTruth *flag)
17057fc3c18eSBarry Smith {
17067fc3c18eSBarry Smith   Mat_MPIBAIJ    *matB = (Mat_MPIBAIJ*)B->data,*matA = (Mat_MPIBAIJ*)A->data;
17077fc3c18eSBarry Smith   Mat            a,b,c,d;
17087fc3c18eSBarry Smith   PetscTruth     flg;
1709dfbe8321SBarry Smith   PetscErrorCode ierr;
17107fc3c18eSBarry Smith 
17117fc3c18eSBarry Smith   PetscFunctionBegin;
17127fc3c18eSBarry Smith   a = matA->A; b = matA->B;
17137fc3c18eSBarry Smith   c = matB->A; d = matB->B;
17147fc3c18eSBarry Smith 
17157fc3c18eSBarry Smith   ierr = MatEqual(a,c,&flg);CHKERRQ(ierr);
1716abc0a331SBarry Smith   if (flg) {
17177fc3c18eSBarry Smith     ierr = MatEqual(b,d,&flg);CHKERRQ(ierr);
17187fc3c18eSBarry Smith   }
17197adad957SLisandro Dalcin   ierr = MPI_Allreduce(&flg,flag,1,MPI_INT,MPI_LAND,((PetscObject)A)->comm);CHKERRQ(ierr);
17207fc3c18eSBarry Smith   PetscFunctionReturn(0);
17217fc3c18eSBarry Smith }
17227fc3c18eSBarry Smith 
17233c896bc6SHong Zhang #undef __FUNCT__
17243c896bc6SHong Zhang #define __FUNCT__ "MatCopy_MPIBAIJ"
17253c896bc6SHong Zhang PetscErrorCode MatCopy_MPIBAIJ(Mat A,Mat B,MatStructure str)
17263c896bc6SHong Zhang {
17273c896bc6SHong Zhang   PetscErrorCode ierr;
17283c896bc6SHong Zhang   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ *)A->data;
17293c896bc6SHong Zhang   Mat_MPIBAIJ    *b = (Mat_MPIBAIJ *)B->data;
17303c896bc6SHong Zhang 
17313c896bc6SHong Zhang   PetscFunctionBegin;
17323c896bc6SHong Zhang   /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */
17333c896bc6SHong Zhang   if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) {
17343c896bc6SHong Zhang     ierr = MatCopy_Basic(A,B,str);CHKERRQ(ierr);
17353c896bc6SHong Zhang   } else {
17363c896bc6SHong Zhang     ierr = MatCopy(a->A,b->A,str);CHKERRQ(ierr);
17373c896bc6SHong Zhang     ierr = MatCopy(a->B,b->B,str);CHKERRQ(ierr);
17383c896bc6SHong Zhang   }
17393c896bc6SHong Zhang   PetscFunctionReturn(0);
17403c896bc6SHong Zhang }
1741273d9f13SBarry Smith 
17424a2ae208SSatish Balay #undef __FUNCT__
17434a2ae208SSatish Balay #define __FUNCT__ "MatSetUpPreallocation_MPIBAIJ"
1744dfbe8321SBarry Smith PetscErrorCode MatSetUpPreallocation_MPIBAIJ(Mat A)
1745273d9f13SBarry Smith {
1746dfbe8321SBarry Smith   PetscErrorCode ierr;
1747273d9f13SBarry Smith 
1748273d9f13SBarry Smith   PetscFunctionBegin;
1749db4efbfdSBarry Smith   ierr =  MatMPIBAIJSetPreallocation(A,-PetscMax(A->rmap->bs,1),PETSC_DEFAULT,0,PETSC_DEFAULT,0);CHKERRQ(ierr);
1750273d9f13SBarry Smith   PetscFunctionReturn(0);
1751273d9f13SBarry Smith }
1752273d9f13SBarry Smith 
17534fe895cdSHong Zhang #undef __FUNCT__
17544fe895cdSHong Zhang #define __FUNCT__ "MatAXPY_MPIBAIJ"
17554fe895cdSHong Zhang PetscErrorCode MatAXPY_MPIBAIJ(Mat Y,PetscScalar a,Mat X,MatStructure str)
17564fe895cdSHong Zhang {
17574fe895cdSHong Zhang   PetscErrorCode ierr;
17584fe895cdSHong Zhang   Mat_MPIBAIJ    *xx=(Mat_MPIBAIJ *)X->data,*yy=(Mat_MPIBAIJ *)Y->data;
17594fe895cdSHong Zhang   PetscBLASInt   bnz,one=1;
17604fe895cdSHong Zhang   Mat_SeqBAIJ    *x,*y;
17614fe895cdSHong Zhang 
17624fe895cdSHong Zhang   PetscFunctionBegin;
17634fe895cdSHong Zhang   if (str == SAME_NONZERO_PATTERN) {
17644fe895cdSHong Zhang     PetscScalar alpha = a;
17654fe895cdSHong Zhang     x = (Mat_SeqBAIJ *)xx->A->data;
17664fe895cdSHong Zhang     y = (Mat_SeqBAIJ *)yy->A->data;
17670805154bSBarry Smith     bnz = PetscBLASIntCast(x->nz);
17684fe895cdSHong Zhang     BLASaxpy_(&bnz,&alpha,x->a,&one,y->a,&one);
17694fe895cdSHong Zhang     x = (Mat_SeqBAIJ *)xx->B->data;
17704fe895cdSHong Zhang     y = (Mat_SeqBAIJ *)yy->B->data;
17710805154bSBarry Smith     bnz = PetscBLASIntCast(x->nz);
17724fe895cdSHong Zhang     BLASaxpy_(&bnz,&alpha,x->a,&one,y->a,&one);
17734fe895cdSHong Zhang   } else {
17744fe895cdSHong Zhang     ierr = MatAXPY_Basic(Y,a,X,str);CHKERRQ(ierr);
17754fe895cdSHong Zhang   }
17764fe895cdSHong Zhang   PetscFunctionReturn(0);
17774fe895cdSHong Zhang }
17784fe895cdSHong Zhang 
177999cafbc1SBarry Smith #undef __FUNCT__
178041c166b1SJed Brown #define __FUNCT__ "MatSetBlockSize_MPIBAIJ"
178141c166b1SJed Brown PetscErrorCode MatSetBlockSize_MPIBAIJ(Mat A,PetscInt bs)
178241c166b1SJed Brown {
178341c166b1SJed Brown   Mat_MPIBAIJ    *a   = (Mat_MPIBAIJ*)A->data;
1784829b6ff0SJed Brown   PetscInt rbs,cbs;
178541c166b1SJed Brown   PetscErrorCode ierr;
178641c166b1SJed Brown 
178741c166b1SJed Brown   PetscFunctionBegin;
178841c166b1SJed Brown   ierr = MatSetBlockSize(a->A,bs);CHKERRQ(ierr);
178941c166b1SJed Brown   ierr = MatSetBlockSize(a->B,bs);CHKERRQ(ierr);
1790829b6ff0SJed Brown   ierr = PetscLayoutGetBlockSize(A->rmap,&rbs);CHKERRQ(ierr);
1791829b6ff0SJed Brown   ierr = PetscLayoutGetBlockSize(A->cmap,&cbs);CHKERRQ(ierr);
1792e32f2f54SBarry Smith   if (rbs != bs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Attempt to set block size %d with BAIJ %d",bs,rbs);
1793e32f2f54SBarry Smith   if (cbs != bs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Attempt to set block size %d with BAIJ %d",bs,cbs);
179441c166b1SJed Brown   PetscFunctionReturn(0);
179541c166b1SJed Brown }
179641c166b1SJed Brown 
179741c166b1SJed Brown #undef __FUNCT__
179899cafbc1SBarry Smith #define __FUNCT__ "MatRealPart_MPIBAIJ"
179999cafbc1SBarry Smith PetscErrorCode MatRealPart_MPIBAIJ(Mat A)
180099cafbc1SBarry Smith {
180199cafbc1SBarry Smith   Mat_MPIBAIJ   *a = (Mat_MPIBAIJ*)A->data;
180299cafbc1SBarry Smith   PetscErrorCode ierr;
180399cafbc1SBarry Smith 
180499cafbc1SBarry Smith   PetscFunctionBegin;
180599cafbc1SBarry Smith   ierr = MatRealPart(a->A);CHKERRQ(ierr);
180699cafbc1SBarry Smith   ierr = MatRealPart(a->B);CHKERRQ(ierr);
180799cafbc1SBarry Smith   PetscFunctionReturn(0);
180899cafbc1SBarry Smith }
180999cafbc1SBarry Smith 
181099cafbc1SBarry Smith #undef __FUNCT__
181199cafbc1SBarry Smith #define __FUNCT__ "MatImaginaryPart_MPIBAIJ"
181299cafbc1SBarry Smith PetscErrorCode MatImaginaryPart_MPIBAIJ(Mat A)
181399cafbc1SBarry Smith {
181499cafbc1SBarry Smith   Mat_MPIBAIJ   *a = (Mat_MPIBAIJ*)A->data;
181599cafbc1SBarry Smith   PetscErrorCode ierr;
181699cafbc1SBarry Smith 
181799cafbc1SBarry Smith   PetscFunctionBegin;
181899cafbc1SBarry Smith   ierr = MatImaginaryPart(a->A);CHKERRQ(ierr);
181999cafbc1SBarry Smith   ierr = MatImaginaryPart(a->B);CHKERRQ(ierr);
182099cafbc1SBarry Smith   PetscFunctionReturn(0);
182199cafbc1SBarry Smith }
182299cafbc1SBarry Smith 
182382094794SBarry Smith #undef __FUNCT__
182482094794SBarry Smith #define __FUNCT__ "MatGetSubMatrix_MPIBAIJ"
18254aa3045dSJed Brown PetscErrorCode MatGetSubMatrix_MPIBAIJ(Mat mat,IS isrow,IS iscol,MatReuse call,Mat *newmat)
18264aa3045dSJed Brown {
18274aa3045dSJed Brown   PetscErrorCode ierr;
18284aa3045dSJed Brown   IS             iscol_local;
18294aa3045dSJed Brown   PetscInt       csize;
18304aa3045dSJed Brown 
18314aa3045dSJed Brown   PetscFunctionBegin;
18324aa3045dSJed Brown   ierr = ISGetLocalSize(iscol,&csize);CHKERRQ(ierr);
1833b79d0421SJed Brown   if (call == MAT_REUSE_MATRIX) {
1834b79d0421SJed Brown     ierr = PetscObjectQuery((PetscObject)*newmat,"ISAllGather",(PetscObject*)&iscol_local);CHKERRQ(ierr);
1835e32f2f54SBarry Smith     if (!iscol_local) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Submatrix passed in was not used before, cannot reuse");
1836b79d0421SJed Brown   } else {
18374aa3045dSJed Brown     ierr = ISAllGather(iscol,&iscol_local);CHKERRQ(ierr);
1838b79d0421SJed Brown   }
18394aa3045dSJed Brown   ierr = MatGetSubMatrix_MPIBAIJ_Private(mat,isrow,iscol_local,csize,call,newmat);CHKERRQ(ierr);
1840b79d0421SJed Brown   if (call == MAT_INITIAL_MATRIX) {
1841b79d0421SJed Brown     ierr = PetscObjectCompose((PetscObject)*newmat,"ISAllGather",(PetscObject)iscol_local);CHKERRQ(ierr);
18424aa3045dSJed Brown     ierr = ISDestroy(iscol_local);CHKERRQ(ierr);
1843b79d0421SJed Brown   }
18444aa3045dSJed Brown   PetscFunctionReturn(0);
18454aa3045dSJed Brown }
18464aa3045dSJed Brown 
18474aa3045dSJed Brown #undef __FUNCT__
18484aa3045dSJed Brown #define __FUNCT__ "MatGetSubMatrix_MPIBAIJ"
184982094794SBarry Smith /*
185082094794SBarry Smith     Not great since it makes two copies of the submatrix, first an SeqBAIJ
185182094794SBarry Smith   in local and then by concatenating the local matrices the end result.
185282094794SBarry Smith   Writing it directly would be much like MatGetSubMatrices_MPIBAIJ()
185382094794SBarry Smith */
18544aa3045dSJed Brown PetscErrorCode MatGetSubMatrix_MPIBAIJ_Private(Mat mat,IS isrow,IS iscol,PetscInt csize,MatReuse call,Mat *newmat)
185582094794SBarry Smith {
185682094794SBarry Smith   PetscErrorCode ierr;
185782094794SBarry Smith   PetscMPIInt    rank,size;
185882094794SBarry Smith   PetscInt       i,m,n,rstart,row,rend,nz,*cwork,j,bs;
185982094794SBarry Smith   PetscInt       *ii,*jj,nlocal,*dlens,*olens,dlen,olen,jend,mglobal;
186082094794SBarry Smith   Mat            *local,M,Mreuse;
186182094794SBarry Smith   MatScalar      *vwork,*aa;
186282094794SBarry Smith   MPI_Comm       comm = ((PetscObject)mat)->comm;
186382094794SBarry Smith   Mat_SeqBAIJ    *aij;
186482094794SBarry Smith 
186582094794SBarry Smith 
186682094794SBarry Smith   PetscFunctionBegin;
186782094794SBarry Smith   ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr);
186882094794SBarry Smith   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
186982094794SBarry Smith 
187082094794SBarry Smith   if (call ==  MAT_REUSE_MATRIX) {
187182094794SBarry Smith     ierr = PetscObjectQuery((PetscObject)*newmat,"SubMatrix",(PetscObject *)&Mreuse);CHKERRQ(ierr);
1872e32f2f54SBarry Smith     if (!Mreuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Submatrix passed in was not used before, cannot reuse");
187382094794SBarry Smith     local = &Mreuse;
187482094794SBarry Smith     ierr  = MatGetSubMatrices(mat,1,&isrow,&iscol,MAT_REUSE_MATRIX,&local);CHKERRQ(ierr);
187582094794SBarry Smith   } else {
187682094794SBarry Smith     ierr   = MatGetSubMatrices(mat,1,&isrow,&iscol,MAT_INITIAL_MATRIX,&local);CHKERRQ(ierr);
187782094794SBarry Smith     Mreuse = *local;
187882094794SBarry Smith     ierr   = PetscFree(local);CHKERRQ(ierr);
187982094794SBarry Smith   }
188082094794SBarry Smith 
188182094794SBarry Smith   /*
188282094794SBarry Smith       m - number of local rows
188382094794SBarry Smith       n - number of columns (same on all processors)
188482094794SBarry Smith       rstart - first row in new global matrix generated
188582094794SBarry Smith   */
188682094794SBarry Smith   ierr = MatGetBlockSize(mat,&bs);CHKERRQ(ierr);
188782094794SBarry Smith   ierr = MatGetSize(Mreuse,&m,&n);CHKERRQ(ierr);
188882094794SBarry Smith   m    = m/bs;
188982094794SBarry Smith   n    = n/bs;
189082094794SBarry Smith 
189182094794SBarry Smith   if (call == MAT_INITIAL_MATRIX) {
189282094794SBarry Smith     aij = (Mat_SeqBAIJ*)(Mreuse)->data;
189382094794SBarry Smith     ii  = aij->i;
189482094794SBarry Smith     jj  = aij->j;
189582094794SBarry Smith 
189682094794SBarry Smith     /*
189782094794SBarry Smith         Determine the number of non-zeros in the diagonal and off-diagonal
189882094794SBarry Smith         portions of the matrix in order to do correct preallocation
189982094794SBarry Smith     */
190082094794SBarry Smith 
190182094794SBarry Smith     /* first get start and end of "diagonal" columns */
190282094794SBarry Smith     if (csize == PETSC_DECIDE) {
190382094794SBarry Smith       ierr = ISGetSize(isrow,&mglobal);CHKERRQ(ierr);
190482094794SBarry Smith       if (mglobal == n*bs) { /* square matrix */
190582094794SBarry Smith 	nlocal = m;
190682094794SBarry Smith       } else {
190782094794SBarry Smith         nlocal = n/size + ((n % size) > rank);
190882094794SBarry Smith       }
190982094794SBarry Smith     } else {
191082094794SBarry Smith       nlocal = csize/bs;
191182094794SBarry Smith     }
191282094794SBarry Smith     ierr   = MPI_Scan(&nlocal,&rend,1,MPIU_INT,MPI_SUM,comm);CHKERRQ(ierr);
191382094794SBarry Smith     rstart = rend - nlocal;
191465e19b50SBarry Smith     if (rank == size - 1 && rend != n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Local column sizes %D do not add up to total number of columns %D",rend,n);
191582094794SBarry Smith 
191682094794SBarry Smith     /* next, compute all the lengths */
191782094794SBarry Smith     ierr  = PetscMalloc((2*m+1)*sizeof(PetscInt),&dlens);CHKERRQ(ierr);
191882094794SBarry Smith     olens = dlens + m;
191982094794SBarry Smith     for (i=0; i<m; i++) {
192082094794SBarry Smith       jend = ii[i+1] - ii[i];
192182094794SBarry Smith       olen = 0;
192282094794SBarry Smith       dlen = 0;
192382094794SBarry Smith       for (j=0; j<jend; j++) {
192482094794SBarry Smith         if (*jj < rstart || *jj >= rend) olen++;
192582094794SBarry Smith         else dlen++;
192682094794SBarry Smith         jj++;
192782094794SBarry Smith       }
192882094794SBarry Smith       olens[i] = olen;
192982094794SBarry Smith       dlens[i] = dlen;
193082094794SBarry Smith     }
193182094794SBarry Smith     ierr = MatCreate(comm,&M);CHKERRQ(ierr);
193282094794SBarry Smith     ierr = MatSetSizes(M,bs*m,bs*nlocal,PETSC_DECIDE,bs*n);CHKERRQ(ierr);
193382094794SBarry Smith     ierr = MatSetType(M,((PetscObject)mat)->type_name);CHKERRQ(ierr);
193482094794SBarry Smith     ierr = MatMPIBAIJSetPreallocation(M,bs,0,dlens,0,olens);CHKERRQ(ierr);
193582094794SBarry Smith     ierr = PetscFree(dlens);CHKERRQ(ierr);
193682094794SBarry Smith   } else {
193782094794SBarry Smith     PetscInt ml,nl;
193882094794SBarry Smith 
193982094794SBarry Smith     M = *newmat;
194082094794SBarry Smith     ierr = MatGetLocalSize(M,&ml,&nl);CHKERRQ(ierr);
1941e32f2f54SBarry Smith     if (ml != m) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Previous matrix must be same size/layout as request");
194282094794SBarry Smith     ierr = MatZeroEntries(M);CHKERRQ(ierr);
194382094794SBarry Smith     /*
194482094794SBarry Smith          The next two lines are needed so we may call MatSetValues_MPIAIJ() below directly,
194582094794SBarry Smith        rather than the slower MatSetValues().
194682094794SBarry Smith     */
194782094794SBarry Smith     M->was_assembled = PETSC_TRUE;
194882094794SBarry Smith     M->assembled     = PETSC_FALSE;
194982094794SBarry Smith   }
195082094794SBarry Smith   ierr = MatSetOption(M,MAT_ROW_ORIENTED,PETSC_FALSE);CHKERRQ(ierr);
195182094794SBarry Smith   ierr = MatGetOwnershipRange(M,&rstart,&rend);CHKERRQ(ierr);
195282094794SBarry Smith   aij = (Mat_SeqBAIJ*)(Mreuse)->data;
195382094794SBarry Smith   ii  = aij->i;
195482094794SBarry Smith   jj  = aij->j;
195582094794SBarry Smith   aa  = aij->a;
195682094794SBarry Smith   for (i=0; i<m; i++) {
195782094794SBarry Smith     row   = rstart/bs + i;
195882094794SBarry Smith     nz    = ii[i+1] - ii[i];
195982094794SBarry Smith     cwork = jj;     jj += nz;
196082094794SBarry Smith     vwork = aa;     aa += nz;
196182094794SBarry Smith     ierr = MatSetValuesBlocked_MPIBAIJ(M,1,&row,nz,cwork,vwork,INSERT_VALUES);CHKERRQ(ierr);
196282094794SBarry Smith   }
196382094794SBarry Smith 
196482094794SBarry Smith   ierr = MatAssemblyBegin(M,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
196582094794SBarry Smith   ierr = MatAssemblyEnd(M,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
196682094794SBarry Smith   *newmat = M;
196782094794SBarry Smith 
196882094794SBarry Smith   /* save submatrix used in processor for next request */
196982094794SBarry Smith   if (call ==  MAT_INITIAL_MATRIX) {
197082094794SBarry Smith     ierr = PetscObjectCompose((PetscObject)M,"SubMatrix",(PetscObject)Mreuse);CHKERRQ(ierr);
197182094794SBarry Smith     ierr = PetscObjectDereference((PetscObject)Mreuse);CHKERRQ(ierr);
197282094794SBarry Smith   }
197382094794SBarry Smith 
197482094794SBarry Smith   PetscFunctionReturn(0);
197582094794SBarry Smith }
197682094794SBarry Smith 
197782094794SBarry Smith #undef __FUNCT__
197882094794SBarry Smith #define __FUNCT__ "MatPermute_MPIBAIJ"
197982094794SBarry Smith PetscErrorCode MatPermute_MPIBAIJ(Mat A,IS rowp,IS colp,Mat *B)
198082094794SBarry Smith {
198182094794SBarry Smith   MPI_Comm       comm,pcomm;
198282094794SBarry Smith   PetscInt       first,local_size,nrows;
198382094794SBarry Smith   const PetscInt *rows;
1984dbf0e21dSBarry Smith   PetscMPIInt    size;
198582094794SBarry Smith   IS             crowp,growp,irowp,lrowp,lcolp,icolp;
198682094794SBarry Smith   PetscErrorCode ierr;
198782094794SBarry Smith 
198882094794SBarry Smith   PetscFunctionBegin;
198982094794SBarry Smith   ierr = PetscObjectGetComm((PetscObject)A,&comm);CHKERRQ(ierr);
199082094794SBarry Smith   /* make a collective version of 'rowp' */
199182094794SBarry Smith   ierr = PetscObjectGetComm((PetscObject)rowp,&pcomm);CHKERRQ(ierr);
199282094794SBarry Smith   if (pcomm==comm) {
199382094794SBarry Smith     crowp = rowp;
199482094794SBarry Smith   } else {
199582094794SBarry Smith     ierr = ISGetSize(rowp,&nrows);CHKERRQ(ierr);
199682094794SBarry Smith     ierr = ISGetIndices(rowp,&rows);CHKERRQ(ierr);
199782094794SBarry Smith     ierr = ISCreateGeneral(comm,nrows,rows,&crowp);CHKERRQ(ierr);
199882094794SBarry Smith     ierr = ISRestoreIndices(rowp,&rows);CHKERRQ(ierr);
199982094794SBarry Smith   }
200082094794SBarry Smith   /* collect the global row permutation and invert it */
200182094794SBarry Smith   ierr = ISAllGather(crowp,&growp);CHKERRQ(ierr);
200282094794SBarry Smith   ierr = ISSetPermutation(growp);CHKERRQ(ierr);
200382094794SBarry Smith   if (pcomm!=comm) {
200482094794SBarry Smith     ierr = ISDestroy(crowp);CHKERRQ(ierr);
200582094794SBarry Smith   }
200682094794SBarry Smith   ierr = ISInvertPermutation(growp,PETSC_DECIDE,&irowp);CHKERRQ(ierr);
200782094794SBarry Smith   /* get the local target indices */
200882094794SBarry Smith   ierr = MatGetOwnershipRange(A,&first,PETSC_NULL);CHKERRQ(ierr);
200982094794SBarry Smith   ierr = MatGetLocalSize(A,&local_size,PETSC_NULL);CHKERRQ(ierr);
201082094794SBarry Smith   ierr = ISGetIndices(irowp,&rows);CHKERRQ(ierr);
201182094794SBarry Smith   ierr = ISCreateGeneral(MPI_COMM_SELF,local_size,rows+first,&lrowp);CHKERRQ(ierr);
201282094794SBarry Smith   ierr = ISRestoreIndices(irowp,&rows);CHKERRQ(ierr);
201382094794SBarry Smith   ierr = ISDestroy(irowp);CHKERRQ(ierr);
201482094794SBarry Smith   /* the column permutation is so much easier;
201582094794SBarry Smith      make a local version of 'colp' and invert it */
201682094794SBarry Smith   ierr = PetscObjectGetComm((PetscObject)colp,&pcomm);CHKERRQ(ierr);
2017dbf0e21dSBarry Smith   ierr = MPI_Comm_size(pcomm,&size);CHKERRQ(ierr);
2018dbf0e21dSBarry Smith   if (size==1) {
201982094794SBarry Smith     lcolp = colp;
202082094794SBarry Smith   } else {
202182094794SBarry Smith     ierr = ISGetSize(colp,&nrows);CHKERRQ(ierr);
202282094794SBarry Smith     ierr = ISGetIndices(colp,&rows);CHKERRQ(ierr);
202382094794SBarry Smith     ierr = ISCreateGeneral(MPI_COMM_SELF,nrows,rows,&lcolp);CHKERRQ(ierr);
202482094794SBarry Smith   }
2025dbf0e21dSBarry Smith   ierr = ISSetPermutation(lcolp);CHKERRQ(ierr);
202682094794SBarry Smith   ierr = ISInvertPermutation(lcolp,PETSC_DECIDE,&icolp);CHKERRQ(ierr);
20274aa3045dSJed Brown   ierr = ISSetPermutation(icolp);CHKERRQ(ierr);
2028dbf0e21dSBarry Smith   if (size>1) {
202982094794SBarry Smith     ierr = ISRestoreIndices(colp,&rows);CHKERRQ(ierr);
203082094794SBarry Smith     ierr = ISDestroy(lcolp);CHKERRQ(ierr);
203182094794SBarry Smith   }
203282094794SBarry Smith   /* now we just get the submatrix */
20334aa3045dSJed Brown   ierr = MatGetSubMatrix_MPIBAIJ_Private(A,lrowp,icolp,local_size,MAT_INITIAL_MATRIX,B);CHKERRQ(ierr);
203482094794SBarry Smith   /* clean up */
203582094794SBarry Smith   ierr = ISDestroy(lrowp);CHKERRQ(ierr);
203682094794SBarry Smith   ierr = ISDestroy(icolp);CHKERRQ(ierr);
203782094794SBarry Smith   PetscFunctionReturn(0);
203882094794SBarry Smith }
203982094794SBarry Smith 
20408c7482ecSBarry Smith #undef __FUNCT__
20418c7482ecSBarry Smith #define __FUNCT__ "MatGetGhosts_MPIBAIJ"
20428c7482ecSBarry Smith PetscErrorCode PETSCMAT_DLLEXPORT MatGetGhosts_MPIBAIJ(Mat mat,PetscInt *nghosts,const PetscInt *ghosts[])
20438c7482ecSBarry Smith {
20448c7482ecSBarry Smith   Mat_MPIBAIJ    *baij = (Mat_MPIBAIJ*) mat->data;
20458c7482ecSBarry Smith   Mat_SeqBAIJ    *B = (Mat_SeqBAIJ*)baij->B->data;
20468c7482ecSBarry Smith 
20478c7482ecSBarry Smith   PetscFunctionBegin;
20488c7482ecSBarry Smith   if (nghosts) { *nghosts = B->nbs;}
20498c7482ecSBarry Smith   if (ghosts) {*ghosts = baij->garray;}
20508c7482ecSBarry Smith   PetscFunctionReturn(0);
20518c7482ecSBarry Smith }
20528c7482ecSBarry Smith 
2053f6d58c54SBarry Smith EXTERN PetscErrorCode CreateColmap_MPIBAIJ_Private(Mat);
2054f6d58c54SBarry Smith 
2055f6d58c54SBarry Smith #undef __FUNCT__
2056f6d58c54SBarry Smith #define __FUNCT__ "MatFDColoringCreate_MPIBAIJ"
2057f6d58c54SBarry Smith /*
2058f6d58c54SBarry Smith     This routine is almost identical to MatFDColoringCreate_MPIBAIJ()!
2059f6d58c54SBarry Smith */
2060f6d58c54SBarry Smith PetscErrorCode MatFDColoringCreate_MPIBAIJ(Mat mat,ISColoring iscoloring,MatFDColoring c)
2061f6d58c54SBarry Smith {
2062f6d58c54SBarry Smith   Mat_MPIBAIJ            *baij = (Mat_MPIBAIJ*)mat->data;
2063f6d58c54SBarry Smith   PetscErrorCode        ierr;
2064f6d58c54SBarry Smith   PetscMPIInt           size,*ncolsonproc,*disp,nn;
2065f6d58c54SBarry Smith   PetscInt              bs,i,n,nrows,j,k,m,*rows = 0,*A_ci,*A_cj,ncols,col;
2066f6d58c54SBarry Smith   const PetscInt        *is;
2067f6d58c54SBarry Smith   PetscInt              nis = iscoloring->n,nctot,*cols,*B_ci,*B_cj;
2068f6d58c54SBarry Smith   PetscInt              *rowhit,M,cstart,cend,colb;
2069f6d58c54SBarry Smith   PetscInt              *columnsforrow,l;
2070f6d58c54SBarry Smith   IS                    *isa;
2071f6d58c54SBarry Smith   PetscTruth             done,flg;
2072f6d58c54SBarry Smith   ISLocalToGlobalMapping map = mat->bmapping;
2073f6d58c54SBarry Smith   PetscInt               *ltog = (map ? map->indices : (PetscInt*) PETSC_NULL) ,ctype=c->ctype;
2074f6d58c54SBarry Smith 
2075f6d58c54SBarry Smith   PetscFunctionBegin;
2076e7e72b3dSBarry Smith   if (!mat->assembled) SETERRQ(((PetscObject)mat)->comm,PETSC_ERR_ARG_WRONGSTATE,"Matrix must be assembled first; MatAssemblyBegin/End();");
2077e7e72b3dSBarry Smith   if (ctype == IS_COLORING_GHOSTED && !map) SETERRQ(((PetscObject)mat)->comm,PETSC_ERR_ARG_INCOMP,"When using ghosted differencing matrix must have local to global mapping provided with MatSetLocalToGlobalMappingBlock");
2078f6d58c54SBarry Smith 
2079f6d58c54SBarry Smith   ierr = ISColoringGetIS(iscoloring,PETSC_IGNORE,&isa);CHKERRQ(ierr);
2080f6d58c54SBarry Smith   ierr = MatGetBlockSize(mat,&bs);CHKERRQ(ierr);
2081f6d58c54SBarry Smith   M                = mat->rmap->n/bs;
2082f6d58c54SBarry Smith   cstart           = mat->cmap->rstart/bs;
2083f6d58c54SBarry Smith   cend             = mat->cmap->rend/bs;
2084f6d58c54SBarry Smith   c->M             = mat->rmap->N/bs;  /* set the global rows and columns and local rows */
2085f6d58c54SBarry Smith   c->N             = mat->cmap->N/bs;
2086f6d58c54SBarry Smith   c->m             = mat->rmap->n/bs;
2087f6d58c54SBarry Smith   c->rstart        = mat->rmap->rstart/bs;
2088f6d58c54SBarry Smith 
2089f6d58c54SBarry Smith   c->ncolors       = nis;
2090f6d58c54SBarry Smith   ierr             = PetscMalloc(nis*sizeof(PetscInt),&c->ncolumns);CHKERRQ(ierr);
2091f6d58c54SBarry Smith   ierr             = PetscMalloc(nis*sizeof(PetscInt*),&c->columns);CHKERRQ(ierr);
2092f6d58c54SBarry Smith   ierr             = PetscMalloc(nis*sizeof(PetscInt),&c->nrows);CHKERRQ(ierr);
2093f6d58c54SBarry Smith   ierr             = PetscMalloc(nis*sizeof(PetscInt*),&c->rows);CHKERRQ(ierr);
2094f6d58c54SBarry Smith   ierr             = PetscMalloc(nis*sizeof(PetscInt*),&c->columnsforrow);CHKERRQ(ierr);
2095f6d58c54SBarry Smith   ierr = PetscLogObjectMemory(c,5*nis*sizeof(PetscInt));CHKERRQ(ierr);
2096f6d58c54SBarry Smith 
2097f6d58c54SBarry Smith   /* Allow access to data structures of local part of matrix */
2098f6d58c54SBarry Smith   if (!baij->colmap) {
2099f6d58c54SBarry Smith     ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
2100f6d58c54SBarry Smith   }
2101f6d58c54SBarry Smith   ierr = MatGetColumnIJ(baij->A,0,PETSC_FALSE,PETSC_FALSE,&ncols,&A_ci,&A_cj,&done);CHKERRQ(ierr);
2102f6d58c54SBarry Smith   ierr = MatGetColumnIJ(baij->B,0,PETSC_FALSE,PETSC_FALSE,&ncols,&B_ci,&B_cj,&done);CHKERRQ(ierr);
2103f6d58c54SBarry Smith 
2104f6d58c54SBarry Smith   ierr = PetscMalloc((M+1)*sizeof(PetscInt),&rowhit);CHKERRQ(ierr);
2105f6d58c54SBarry Smith   ierr = PetscMalloc((M+1)*sizeof(PetscInt),&columnsforrow);CHKERRQ(ierr);
2106f6d58c54SBarry Smith 
2107f6d58c54SBarry Smith   for (i=0; i<nis; i++) {
2108f6d58c54SBarry Smith     ierr = ISGetLocalSize(isa[i],&n);CHKERRQ(ierr);
2109f6d58c54SBarry Smith     ierr = ISGetIndices(isa[i],&is);CHKERRQ(ierr);
2110f6d58c54SBarry Smith     c->ncolumns[i] = n;
2111f6d58c54SBarry Smith     if (n) {
2112f6d58c54SBarry Smith       ierr = PetscMalloc(n*sizeof(PetscInt),&c->columns[i]);CHKERRQ(ierr);
2113f6d58c54SBarry Smith       ierr = PetscLogObjectMemory(c,n*sizeof(PetscInt));CHKERRQ(ierr);
2114f6d58c54SBarry Smith       ierr = PetscMemcpy(c->columns[i],is,n*sizeof(PetscInt));CHKERRQ(ierr);
2115f6d58c54SBarry Smith     } else {
2116f6d58c54SBarry Smith       c->columns[i]  = 0;
2117f6d58c54SBarry Smith     }
2118f6d58c54SBarry Smith 
2119f6d58c54SBarry Smith     if (ctype == IS_COLORING_GLOBAL){
2120f6d58c54SBarry Smith       /* Determine the total (parallel) number of columns of this color */
2121f6d58c54SBarry Smith       ierr = MPI_Comm_size(((PetscObject)mat)->comm,&size);CHKERRQ(ierr);
2122fca92195SBarry Smith       ierr = PetscMalloc2(size,PetscMPIInt,&ncolsonproc,size,PetscMPIInt,&disp);CHKERRQ(ierr);
2123f6d58c54SBarry Smith 
2124f6d58c54SBarry Smith       nn   = PetscMPIIntCast(n);
2125f6d58c54SBarry Smith       ierr = MPI_Allgather(&nn,1,MPI_INT,ncolsonproc,1,MPI_INT,((PetscObject)mat)->comm);CHKERRQ(ierr);
2126f6d58c54SBarry Smith       nctot = 0; for (j=0; j<size; j++) {nctot += ncolsonproc[j];}
2127f6d58c54SBarry Smith       if (!nctot) {
2128f6d58c54SBarry Smith         ierr = PetscInfo(mat,"Coloring of matrix has some unneeded colors with no corresponding rows\n");CHKERRQ(ierr);
2129f6d58c54SBarry Smith       }
2130f6d58c54SBarry Smith 
2131f6d58c54SBarry Smith       disp[0] = 0;
2132f6d58c54SBarry Smith       for (j=1; j<size; j++) {
2133f6d58c54SBarry Smith         disp[j] = disp[j-1] + ncolsonproc[j-1];
2134f6d58c54SBarry Smith       }
2135f6d58c54SBarry Smith 
2136f6d58c54SBarry Smith       /* Get complete list of columns for color on each processor */
2137f6d58c54SBarry Smith       ierr = PetscMalloc((nctot+1)*sizeof(PetscInt),&cols);CHKERRQ(ierr);
2138f6d58c54SBarry Smith       ierr = MPI_Allgatherv((void*)is,n,MPIU_INT,cols,ncolsonproc,disp,MPIU_INT,((PetscObject)mat)->comm);CHKERRQ(ierr);
2139fca92195SBarry Smith       ierr = PetscFree2(ncolsonproc,disp);CHKERRQ(ierr);
2140f6d58c54SBarry Smith     } else if (ctype == IS_COLORING_GHOSTED){
2141f6d58c54SBarry Smith       /* Determine local number of columns of this color on this process, including ghost points */
2142f6d58c54SBarry Smith       nctot = n;
2143f6d58c54SBarry Smith       ierr = PetscMalloc((nctot+1)*sizeof(PetscInt),&cols);CHKERRQ(ierr);
2144f6d58c54SBarry Smith       ierr = PetscMemcpy(cols,is,n*sizeof(PetscInt));CHKERRQ(ierr);
2145f6d58c54SBarry Smith     } else {
2146e32f2f54SBarry Smith       SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Not provided for this MatFDColoring type");
2147f6d58c54SBarry Smith     }
2148f6d58c54SBarry Smith 
2149f6d58c54SBarry Smith     /*
2150f6d58c54SBarry Smith        Mark all rows affect by these columns
2151f6d58c54SBarry Smith     */
2152f6d58c54SBarry Smith     /* Temporary option to allow for debugging/testing */
2153f6d58c54SBarry Smith     flg  = PETSC_FALSE;
2154f6d58c54SBarry Smith     ierr = PetscOptionsGetTruth(PETSC_NULL,"-matfdcoloring_slow",&flg,PETSC_NULL);CHKERRQ(ierr);
2155f6d58c54SBarry Smith     if (!flg) {/*-----------------------------------------------------------------------------*/
2156f6d58c54SBarry Smith       /* crude, fast version */
2157f6d58c54SBarry Smith       ierr = PetscMemzero(rowhit,M*sizeof(PetscInt));CHKERRQ(ierr);
2158f6d58c54SBarry Smith       /* loop over columns*/
2159f6d58c54SBarry Smith       for (j=0; j<nctot; j++) {
2160f6d58c54SBarry Smith         if (ctype == IS_COLORING_GHOSTED) {
2161f6d58c54SBarry Smith           col = ltog[cols[j]];
2162f6d58c54SBarry Smith         } else {
2163f6d58c54SBarry Smith           col  = cols[j];
2164f6d58c54SBarry Smith         }
2165f6d58c54SBarry Smith         if (col >= cstart && col < cend) {
2166f6d58c54SBarry Smith           /* column is in diagonal block of matrix */
2167f6d58c54SBarry Smith           rows = A_cj + A_ci[col-cstart];
2168f6d58c54SBarry Smith           m    = A_ci[col-cstart+1] - A_ci[col-cstart];
2169f6d58c54SBarry Smith         } else {
2170f6d58c54SBarry Smith #if defined (PETSC_USE_CTABLE)
2171cb9801acSJed Brown           ierr = PetscTableFind(baij->colmap,col+1,&colb);CHKERRQ(ierr);
2172f6d58c54SBarry Smith 	  colb --;
2173f6d58c54SBarry Smith #else
2174f6d58c54SBarry Smith           colb = baij->colmap[col] - 1;
2175f6d58c54SBarry Smith #endif
2176f6d58c54SBarry Smith           if (colb == -1) {
2177f6d58c54SBarry Smith             m = 0;
2178f6d58c54SBarry Smith           } else {
2179f6d58c54SBarry Smith             colb = colb/bs;
2180f6d58c54SBarry Smith             rows = B_cj + B_ci[colb];
2181f6d58c54SBarry Smith             m    = B_ci[colb+1] - B_ci[colb];
2182f6d58c54SBarry Smith           }
2183f6d58c54SBarry Smith         }
2184f6d58c54SBarry Smith         /* loop over columns marking them in rowhit */
2185f6d58c54SBarry Smith         for (k=0; k<m; k++) {
2186f6d58c54SBarry Smith           rowhit[*rows++] = col + 1;
2187f6d58c54SBarry Smith         }
2188f6d58c54SBarry Smith       }
2189f6d58c54SBarry Smith 
2190f6d58c54SBarry Smith       /* count the number of hits */
2191f6d58c54SBarry Smith       nrows = 0;
2192f6d58c54SBarry Smith       for (j=0; j<M; j++) {
2193f6d58c54SBarry Smith         if (rowhit[j]) nrows++;
2194f6d58c54SBarry Smith       }
2195f6d58c54SBarry Smith       c->nrows[i]         = nrows;
2196f6d58c54SBarry Smith       ierr                = PetscMalloc((nrows+1)*sizeof(PetscInt),&c->rows[i]);CHKERRQ(ierr);
2197f6d58c54SBarry Smith       ierr                = PetscMalloc((nrows+1)*sizeof(PetscInt),&c->columnsforrow[i]);CHKERRQ(ierr);
2198f6d58c54SBarry Smith       ierr = PetscLogObjectMemory(c,2*(nrows+1)*sizeof(PetscInt));CHKERRQ(ierr);
2199f6d58c54SBarry Smith       nrows = 0;
2200f6d58c54SBarry Smith       for (j=0; j<M; j++) {
2201f6d58c54SBarry Smith         if (rowhit[j]) {
2202f6d58c54SBarry Smith           c->rows[i][nrows]           = j;
2203f6d58c54SBarry Smith           c->columnsforrow[i][nrows] = rowhit[j] - 1;
2204f6d58c54SBarry Smith           nrows++;
2205f6d58c54SBarry Smith         }
2206f6d58c54SBarry Smith       }
2207f6d58c54SBarry Smith     } else {/*-------------------------------------------------------------------------------*/
2208f6d58c54SBarry Smith       /* slow version, using rowhit as a linked list */
2209f6d58c54SBarry Smith       PetscInt currentcol,fm,mfm;
2210f6d58c54SBarry Smith       rowhit[M] = M;
2211f6d58c54SBarry Smith       nrows     = 0;
2212f6d58c54SBarry Smith       /* loop over columns*/
2213f6d58c54SBarry Smith       for (j=0; j<nctot; j++) {
2214f6d58c54SBarry Smith         if (ctype == IS_COLORING_GHOSTED) {
2215f6d58c54SBarry Smith           col = ltog[cols[j]];
2216f6d58c54SBarry Smith         } else {
2217f6d58c54SBarry Smith           col  = cols[j];
2218f6d58c54SBarry Smith         }
2219f6d58c54SBarry Smith         if (col >= cstart && col < cend) {
2220f6d58c54SBarry Smith           /* column is in diagonal block of matrix */
2221f6d58c54SBarry Smith           rows = A_cj + A_ci[col-cstart];
2222f6d58c54SBarry Smith           m    = A_ci[col-cstart+1] - A_ci[col-cstart];
2223f6d58c54SBarry Smith         } else {
2224f6d58c54SBarry Smith #if defined (PETSC_USE_CTABLE)
2225f6d58c54SBarry Smith           ierr = PetscTableFind(baij->colmap,col+1,&colb);CHKERRQ(ierr);
2226f6d58c54SBarry Smith           colb --;
2227f6d58c54SBarry Smith #else
2228f6d58c54SBarry Smith           colb = baij->colmap[col] - 1;
2229f6d58c54SBarry Smith #endif
2230f6d58c54SBarry Smith           if (colb == -1) {
2231f6d58c54SBarry Smith             m = 0;
2232f6d58c54SBarry Smith           } else {
2233f6d58c54SBarry Smith             colb = colb/bs;
2234f6d58c54SBarry Smith             rows = B_cj + B_ci[colb];
2235f6d58c54SBarry Smith             m    = B_ci[colb+1] - B_ci[colb];
2236f6d58c54SBarry Smith           }
2237f6d58c54SBarry Smith         }
2238f6d58c54SBarry Smith 
2239f6d58c54SBarry Smith         /* loop over columns marking them in rowhit */
2240f6d58c54SBarry Smith         fm    = M; /* fm points to first entry in linked list */
2241f6d58c54SBarry Smith         for (k=0; k<m; k++) {
2242f6d58c54SBarry Smith           currentcol = *rows++;
2243f6d58c54SBarry Smith 	  /* is it already in the list? */
2244f6d58c54SBarry Smith           do {
2245f6d58c54SBarry Smith             mfm  = fm;
2246f6d58c54SBarry Smith             fm   = rowhit[fm];
2247f6d58c54SBarry Smith           } while (fm < currentcol);
2248f6d58c54SBarry Smith           /* not in list so add it */
2249f6d58c54SBarry Smith           if (fm != currentcol) {
2250f6d58c54SBarry Smith             nrows++;
2251f6d58c54SBarry Smith             columnsforrow[currentcol] = col;
2252f6d58c54SBarry Smith             /* next three lines insert new entry into linked list */
2253f6d58c54SBarry Smith             rowhit[mfm]               = currentcol;
2254f6d58c54SBarry Smith             rowhit[currentcol]        = fm;
2255f6d58c54SBarry Smith             fm                        = currentcol;
2256f6d58c54SBarry Smith             /* fm points to present position in list since we know the columns are sorted */
2257f6d58c54SBarry Smith           } else {
2258e32f2f54SBarry Smith             SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Invalid coloring of matrix detected");
2259f6d58c54SBarry Smith           }
2260f6d58c54SBarry Smith         }
2261f6d58c54SBarry Smith       }
2262f6d58c54SBarry Smith       c->nrows[i]         = nrows;
2263f6d58c54SBarry Smith       ierr = PetscMalloc((nrows+1)*sizeof(PetscInt),&c->rows[i]);CHKERRQ(ierr);
2264f6d58c54SBarry Smith       ierr = PetscMalloc((nrows+1)*sizeof(PetscInt),&c->columnsforrow[i]);CHKERRQ(ierr);
2265f6d58c54SBarry Smith       ierr = PetscLogObjectMemory(c,(nrows+1)*sizeof(PetscInt));CHKERRQ(ierr);
2266f6d58c54SBarry Smith       /* now store the linked list of rows into c->rows[i] */
2267f6d58c54SBarry Smith       nrows = 0;
2268f6d58c54SBarry Smith       fm    = rowhit[M];
2269f6d58c54SBarry Smith       do {
2270f6d58c54SBarry Smith         c->rows[i][nrows]            = fm;
2271f6d58c54SBarry Smith         c->columnsforrow[i][nrows++] = columnsforrow[fm];
2272f6d58c54SBarry Smith         fm                           = rowhit[fm];
2273f6d58c54SBarry Smith       } while (fm < M);
2274f6d58c54SBarry Smith     } /* ---------------------------------------------------------------------------------------*/
2275f6d58c54SBarry Smith     ierr = PetscFree(cols);CHKERRQ(ierr);
2276f6d58c54SBarry Smith   }
2277f6d58c54SBarry Smith 
2278f6d58c54SBarry Smith   /* Optimize by adding the vscale, and scaleforrow[][] fields */
2279f6d58c54SBarry Smith   /*
2280f6d58c54SBarry Smith        vscale will contain the "diagonal" on processor scalings followed by the off processor
2281f6d58c54SBarry Smith   */
2282f6d58c54SBarry Smith   if (ctype == IS_COLORING_GLOBAL) {
2283f6d58c54SBarry Smith     PetscInt *garray;
2284f6d58c54SBarry Smith     ierr = PetscMalloc(baij->B->cmap->n*sizeof(PetscInt),&garray);CHKERRQ(ierr);
2285f6d58c54SBarry Smith     for (i=0; i<baij->B->cmap->n/bs; i++) {
2286f6d58c54SBarry Smith       for (j=0; j<bs; j++) {
2287f6d58c54SBarry Smith         garray[i*bs+j] = bs*baij->garray[i]+j;
2288f6d58c54SBarry Smith       }
2289f6d58c54SBarry Smith     }
2290f6d58c54SBarry Smith     ierr = VecCreateGhost(((PetscObject)mat)->comm,baij->A->rmap->n,PETSC_DETERMINE,baij->B->cmap->n,garray,&c->vscale);CHKERRQ(ierr);
2291f6d58c54SBarry Smith     ierr = PetscFree(garray);CHKERRQ(ierr);
2292f6d58c54SBarry Smith     CHKMEMQ;
2293f6d58c54SBarry Smith     ierr = PetscMalloc(c->ncolors*sizeof(PetscInt*),&c->vscaleforrow);CHKERRQ(ierr);
2294f6d58c54SBarry Smith     for (k=0; k<c->ncolors; k++) {
2295f6d58c54SBarry Smith       ierr = PetscMalloc((c->nrows[k]+1)*sizeof(PetscInt),&c->vscaleforrow[k]);CHKERRQ(ierr);
2296f6d58c54SBarry Smith       for (l=0; l<c->nrows[k]; l++) {
2297f6d58c54SBarry Smith         col = c->columnsforrow[k][l];
2298f6d58c54SBarry Smith         if (col >= cstart && col < cend) {
2299f6d58c54SBarry Smith           /* column is in diagonal block of matrix */
2300f6d58c54SBarry Smith           colb = col - cstart;
2301f6d58c54SBarry Smith         } else {
2302f6d58c54SBarry Smith           /* column  is in "off-processor" part */
2303f6d58c54SBarry Smith #if defined (PETSC_USE_CTABLE)
2304f6d58c54SBarry Smith           ierr = PetscTableFind(baij->colmap,col+1,&colb);CHKERRQ(ierr);
2305f6d58c54SBarry Smith           colb --;
2306f6d58c54SBarry Smith #else
2307f6d58c54SBarry Smith           colb = baij->colmap[col] - 1;
2308f6d58c54SBarry Smith #endif
2309f6d58c54SBarry Smith           colb = colb/bs;
2310f6d58c54SBarry Smith           colb += cend - cstart;
2311f6d58c54SBarry Smith         }
2312f6d58c54SBarry Smith         c->vscaleforrow[k][l] = colb;
2313f6d58c54SBarry Smith       }
2314f6d58c54SBarry Smith     }
2315f6d58c54SBarry Smith   } else if (ctype == IS_COLORING_GHOSTED) {
2316f6d58c54SBarry Smith     /* Get gtol mapping */
2317f6d58c54SBarry Smith     PetscInt N = mat->cmap->N, *gtol;
2318f6d58c54SBarry Smith     ierr = PetscMalloc((N+1)*sizeof(PetscInt),&gtol);CHKERRQ(ierr);
2319f6d58c54SBarry Smith     for (i=0; i<N; i++) gtol[i] = -1;
2320f6d58c54SBarry Smith     for (i=0; i<map->n; i++) gtol[ltog[i]] = i;
2321f6d58c54SBarry Smith 
2322f6d58c54SBarry Smith     c->vscale = 0; /* will be created in MatFDColoringApply() */
2323f6d58c54SBarry Smith     ierr = PetscMalloc(c->ncolors*sizeof(PetscInt*),&c->vscaleforrow);CHKERRQ(ierr);
2324f6d58c54SBarry Smith     for (k=0; k<c->ncolors; k++) {
2325f6d58c54SBarry Smith       ierr = PetscMalloc((c->nrows[k]+1)*sizeof(PetscInt),&c->vscaleforrow[k]);CHKERRQ(ierr);
2326f6d58c54SBarry Smith       for (l=0; l<c->nrows[k]; l++) {
2327f6d58c54SBarry Smith         col = c->columnsforrow[k][l];      /* global column index */
2328f6d58c54SBarry Smith         c->vscaleforrow[k][l] = gtol[col]; /* local column index */
2329f6d58c54SBarry Smith       }
2330f6d58c54SBarry Smith     }
2331f6d58c54SBarry Smith     ierr = PetscFree(gtol);CHKERRQ(ierr);
2332f6d58c54SBarry Smith   }
2333f6d58c54SBarry Smith   ierr = ISColoringRestoreIS(iscoloring,&isa);CHKERRQ(ierr);
2334f6d58c54SBarry Smith 
2335f6d58c54SBarry Smith   ierr = PetscFree(rowhit);CHKERRQ(ierr);
2336f6d58c54SBarry Smith   ierr = PetscFree(columnsforrow);CHKERRQ(ierr);
2337f6d58c54SBarry Smith   ierr = MatRestoreColumnIJ(baij->A,0,PETSC_FALSE,PETSC_FALSE,&ncols,&A_ci,&A_cj,&done);CHKERRQ(ierr);
2338f6d58c54SBarry Smith   ierr = MatRestoreColumnIJ(baij->B,0,PETSC_FALSE,PETSC_FALSE,&ncols,&B_ci,&B_cj,&done);CHKERRQ(ierr);
2339f6d58c54SBarry Smith     CHKMEMQ;
2340f6d58c54SBarry Smith   PetscFunctionReturn(0);
2341f6d58c54SBarry Smith }
2342f6d58c54SBarry Smith 
2343f6d58c54SBarry Smith #undef __FUNCT__
2344f6d58c54SBarry Smith #define __FUNCT__ "MatGetSeqNonzerostructure_MPIBAIJ"
2345f6d58c54SBarry Smith PetscErrorCode MatGetSeqNonzerostructure_MPIBAIJ(Mat A,Mat *newmat)
2346f6d58c54SBarry Smith {
2347f6d58c54SBarry Smith   Mat            B;
2348f6d58c54SBarry Smith   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ *)A->data;
2349f6d58c54SBarry Smith   Mat_SeqBAIJ    *ad = (Mat_SeqBAIJ*)a->A->data,*bd = (Mat_SeqBAIJ*)a->B->data;
2350f6d58c54SBarry Smith   Mat_SeqAIJ     *b;
2351f6d58c54SBarry Smith   PetscErrorCode ierr;
2352f6d58c54SBarry Smith   PetscMPIInt    size,rank,*recvcounts = 0,*displs = 0;
2353f6d58c54SBarry Smith   PetscInt       sendcount,i,*rstarts = A->rmap->range,n,cnt,j,bs = A->rmap->bs;
2354f6d58c54SBarry Smith   PetscInt       m,*garray = a->garray,*lens,*jsendbuf,*a_jsendbuf,*b_jsendbuf;
2355f6d58c54SBarry Smith 
2356f6d58c54SBarry Smith   PetscFunctionBegin;
2357f6d58c54SBarry Smith   ierr = MPI_Comm_size(((PetscObject)A)->comm,&size);CHKERRQ(ierr);
2358f6d58c54SBarry Smith   ierr = MPI_Comm_rank(((PetscObject)A)->comm,&rank);CHKERRQ(ierr);
2359f6d58c54SBarry Smith 
2360f6d58c54SBarry Smith   /* ----------------------------------------------------------------
2361f6d58c54SBarry Smith      Tell every processor the number of nonzeros per row
2362f6d58c54SBarry Smith   */
2363f6d58c54SBarry Smith   ierr = PetscMalloc((A->rmap->N/bs)*sizeof(PetscInt),&lens);CHKERRQ(ierr);
2364f6d58c54SBarry Smith   for (i=A->rmap->rstart/bs; i<A->rmap->rend/bs; i++) {
2365f6d58c54SBarry Smith     lens[i] = ad->i[i-A->rmap->rstart/bs+1] - ad->i[i-A->rmap->rstart/bs] + bd->i[i-A->rmap->rstart/bs+1] - bd->i[i-A->rmap->rstart/bs];
2366f6d58c54SBarry Smith   }
2367f6d58c54SBarry Smith   sendcount = A->rmap->rend/bs - A->rmap->rstart/bs;
2368f6d58c54SBarry Smith   ierr = PetscMalloc(2*size*sizeof(PetscMPIInt),&recvcounts);CHKERRQ(ierr);
2369f6d58c54SBarry Smith   displs     = recvcounts + size;
2370f6d58c54SBarry Smith   for (i=0; i<size; i++) {
2371f6d58c54SBarry Smith     recvcounts[i] = A->rmap->range[i+1]/bs - A->rmap->range[i]/bs;
2372f6d58c54SBarry Smith     displs[i]     = A->rmap->range[i]/bs;
2373f6d58c54SBarry Smith   }
2374f6d58c54SBarry Smith #if defined(PETSC_HAVE_MPI_IN_PLACE)
2375f6d58c54SBarry Smith   ierr  = MPI_Allgatherv(MPI_IN_PLACE,0,MPI_DATATYPE_NULL,lens,recvcounts,displs,MPIU_INT,((PetscObject)A)->comm);CHKERRQ(ierr);
2376f6d58c54SBarry Smith #else
2377f6d58c54SBarry Smith   ierr  = MPI_Allgatherv(lens+A->rmap->rstart/bs,sendcount,MPIU_INT,lens,recvcounts,displs,MPIU_INT,((PetscObject)A)->comm);CHKERRQ(ierr);
2378f6d58c54SBarry Smith #endif
2379f6d58c54SBarry Smith   /* ---------------------------------------------------------------
2380f6d58c54SBarry Smith      Create the sequential matrix of the same type as the local block diagonal
2381f6d58c54SBarry Smith   */
2382f6d58c54SBarry Smith   ierr  = MatCreate(PETSC_COMM_SELF,&B);CHKERRQ(ierr);
2383f6d58c54SBarry Smith   ierr  = MatSetSizes(B,A->rmap->N/bs,A->cmap->N/bs,PETSC_DETERMINE,PETSC_DETERMINE);CHKERRQ(ierr);
2384f6d58c54SBarry Smith   ierr  = MatSetType(B,MATSEQAIJ);CHKERRQ(ierr);
2385f6d58c54SBarry Smith   ierr  = MatSeqAIJSetPreallocation(B,0,lens);CHKERRQ(ierr);
2386f6d58c54SBarry Smith   b = (Mat_SeqAIJ *)B->data;
2387f6d58c54SBarry Smith 
2388f6d58c54SBarry Smith   /*--------------------------------------------------------------------
2389f6d58c54SBarry Smith     Copy my part of matrix column indices over
2390f6d58c54SBarry Smith   */
2391f6d58c54SBarry Smith   sendcount  = ad->nz + bd->nz;
2392f6d58c54SBarry Smith   jsendbuf   = b->j + b->i[rstarts[rank]/bs];
2393f6d58c54SBarry Smith   a_jsendbuf = ad->j;
2394f6d58c54SBarry Smith   b_jsendbuf = bd->j;
2395f6d58c54SBarry Smith   n          = A->rmap->rend/bs - A->rmap->rstart/bs;
2396f6d58c54SBarry Smith   cnt        = 0;
2397f6d58c54SBarry Smith   for (i=0; i<n; i++) {
2398f6d58c54SBarry Smith 
2399f6d58c54SBarry Smith     /* put in lower diagonal portion */
2400f6d58c54SBarry Smith     m = bd->i[i+1] - bd->i[i];
2401f6d58c54SBarry Smith     while (m > 0) {
2402f6d58c54SBarry Smith       /* is it above diagonal (in bd (compressed) numbering) */
2403f6d58c54SBarry Smith       if (garray[*b_jsendbuf] > A->rmap->rstart/bs + i) break;
2404f6d58c54SBarry Smith       jsendbuf[cnt++] = garray[*b_jsendbuf++];
2405f6d58c54SBarry Smith       m--;
2406f6d58c54SBarry Smith     }
2407f6d58c54SBarry Smith 
2408f6d58c54SBarry Smith     /* put in diagonal portion */
2409f6d58c54SBarry Smith     for (j=ad->i[i]; j<ad->i[i+1]; j++) {
2410f6d58c54SBarry Smith       jsendbuf[cnt++] = A->rmap->rstart/bs + *a_jsendbuf++;
2411f6d58c54SBarry Smith     }
2412f6d58c54SBarry Smith 
2413f6d58c54SBarry Smith     /* put in upper diagonal portion */
2414f6d58c54SBarry Smith     while (m-- > 0) {
2415f6d58c54SBarry Smith       jsendbuf[cnt++] = garray[*b_jsendbuf++];
2416f6d58c54SBarry Smith     }
2417f6d58c54SBarry Smith   }
2418e32f2f54SBarry Smith   if (cnt != sendcount) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Corrupted PETSc matrix: nz given %D actual nz %D",sendcount,cnt);
2419f6d58c54SBarry Smith 
2420f6d58c54SBarry Smith   /*--------------------------------------------------------------------
2421f6d58c54SBarry Smith     Gather all column indices to all processors
2422f6d58c54SBarry Smith   */
2423f6d58c54SBarry Smith   for (i=0; i<size; i++) {
2424f6d58c54SBarry Smith     recvcounts[i] = 0;
2425f6d58c54SBarry Smith     for (j=A->rmap->range[i]/bs; j<A->rmap->range[i+1]/bs; j++) {
2426f6d58c54SBarry Smith       recvcounts[i] += lens[j];
2427f6d58c54SBarry Smith     }
2428f6d58c54SBarry Smith   }
2429f6d58c54SBarry Smith   displs[0]  = 0;
2430f6d58c54SBarry Smith   for (i=1; i<size; i++) {
2431f6d58c54SBarry Smith     displs[i] = displs[i-1] + recvcounts[i-1];
2432f6d58c54SBarry Smith   }
2433f6d58c54SBarry Smith #if defined(PETSC_HAVE_MPI_IN_PLACE)
2434f6d58c54SBarry Smith   ierr = MPI_Allgatherv(MPI_IN_PLACE,0,MPI_DATATYPE_NULL,b->j,recvcounts,displs,MPIU_INT,((PetscObject)A)->comm);CHKERRQ(ierr);
2435f6d58c54SBarry Smith #else
2436f6d58c54SBarry Smith   ierr = MPI_Allgatherv(jsendbuf,sendcount,MPIU_INT,b->j,recvcounts,displs,MPIU_INT,((PetscObject)A)->comm);CHKERRQ(ierr);
2437f6d58c54SBarry Smith #endif
2438f6d58c54SBarry Smith   /*--------------------------------------------------------------------
2439f6d58c54SBarry Smith     Assemble the matrix into useable form (note numerical values not yet set)
2440f6d58c54SBarry Smith   */
2441f6d58c54SBarry Smith   /* set the b->ilen (length of each row) values */
2442f6d58c54SBarry Smith   ierr = PetscMemcpy(b->ilen,lens,(A->rmap->N/bs)*sizeof(PetscInt));CHKERRQ(ierr);
2443f6d58c54SBarry Smith   /* set the b->i indices */
2444f6d58c54SBarry Smith   b->i[0] = 0;
2445f6d58c54SBarry Smith   for (i=1; i<=A->rmap->N/bs; i++) {
2446f6d58c54SBarry Smith     b->i[i] = b->i[i-1] + lens[i-1];
2447f6d58c54SBarry Smith   }
2448f6d58c54SBarry Smith   ierr = PetscFree(lens);CHKERRQ(ierr);
2449f6d58c54SBarry Smith   ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
2450f6d58c54SBarry Smith   ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
2451f6d58c54SBarry Smith   ierr = PetscFree(recvcounts);CHKERRQ(ierr);
2452f6d58c54SBarry Smith 
2453f6d58c54SBarry Smith   if (A->symmetric){
2454f6d58c54SBarry Smith     ierr = MatSetOption(B,MAT_SYMMETRIC,PETSC_TRUE);CHKERRQ(ierr);
2455f6d58c54SBarry Smith   } else if (A->hermitian) {
2456f6d58c54SBarry Smith     ierr = MatSetOption(B,MAT_HERMITIAN,PETSC_TRUE);CHKERRQ(ierr);
2457f6d58c54SBarry Smith   } else if (A->structurally_symmetric) {
2458f6d58c54SBarry Smith     ierr = MatSetOption(B,MAT_STRUCTURALLY_SYMMETRIC,PETSC_TRUE);CHKERRQ(ierr);
2459f6d58c54SBarry Smith   }
2460f6d58c54SBarry Smith   *newmat = B;
2461f6d58c54SBarry Smith   PetscFunctionReturn(0);
2462f6d58c54SBarry Smith }
2463f6d58c54SBarry Smith 
2464b1a666ecSBarry Smith #undef __FUNCT__
2465b1a666ecSBarry Smith #define __FUNCT__ "MatSOR_MPIBAIJ"
2466b1a666ecSBarry Smith PetscErrorCode MatSOR_MPIBAIJ(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx)
2467b1a666ecSBarry Smith {
2468b1a666ecSBarry Smith   Mat_MPIBAIJ    *mat = (Mat_MPIBAIJ*)matin->data;
2469b1a666ecSBarry Smith   PetscErrorCode ierr;
2470b1a666ecSBarry Smith   Vec            bb1 = 0;
2471b1a666ecSBarry Smith 
2472b1a666ecSBarry Smith   PetscFunctionBegin;
2473b1a666ecSBarry Smith   if (its > 1 || ~flag & SOR_ZERO_INITIAL_GUESS) {
2474b1a666ecSBarry Smith     ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr);
2475b1a666ecSBarry Smith   }
2476b1a666ecSBarry Smith 
2477b1a666ecSBarry Smith   if (flag == SOR_APPLY_UPPER) {
2478b1a666ecSBarry Smith     ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr);
2479b1a666ecSBarry Smith     PetscFunctionReturn(0);
2480b1a666ecSBarry Smith   }
2481b1a666ecSBarry Smith 
2482b1a666ecSBarry Smith   if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP){
2483b1a666ecSBarry Smith     if (flag & SOR_ZERO_INITIAL_GUESS) {
2484b1a666ecSBarry Smith       ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr);
2485b1a666ecSBarry Smith       its--;
2486b1a666ecSBarry Smith     }
2487b1a666ecSBarry Smith 
2488b1a666ecSBarry Smith     while (its--) {
2489b1a666ecSBarry Smith       ierr = VecScatterBegin(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
2490b1a666ecSBarry Smith       ierr = VecScatterEnd(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
2491b1a666ecSBarry Smith 
2492b1a666ecSBarry Smith       /* update rhs: bb1 = bb - B*x */
2493b1a666ecSBarry Smith       ierr = VecScale(mat->lvec,-1.0);CHKERRQ(ierr);
2494b1a666ecSBarry Smith       ierr = (*mat->B->ops->multadd)(mat->B,mat->lvec,bb,bb1);CHKERRQ(ierr);
2495b1a666ecSBarry Smith 
2496b1a666ecSBarry Smith       /* local sweep */
2497b1a666ecSBarry Smith       ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,1,xx);CHKERRQ(ierr);
2498b1a666ecSBarry Smith     }
2499b1a666ecSBarry Smith   } else if (flag & SOR_LOCAL_FORWARD_SWEEP){
2500b1a666ecSBarry Smith     if (flag & SOR_ZERO_INITIAL_GUESS) {
2501b1a666ecSBarry Smith       ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr);
2502b1a666ecSBarry Smith       its--;
2503b1a666ecSBarry Smith     }
2504b1a666ecSBarry Smith     while (its--) {
2505b1a666ecSBarry Smith       ierr = VecScatterBegin(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
2506b1a666ecSBarry Smith       ierr = VecScatterEnd(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
2507b1a666ecSBarry Smith 
2508b1a666ecSBarry Smith       /* update rhs: bb1 = bb - B*x */
2509b1a666ecSBarry Smith       ierr = VecScale(mat->lvec,-1.0);CHKERRQ(ierr);
2510b1a666ecSBarry Smith       ierr = (*mat->B->ops->multadd)(mat->B,mat->lvec,bb,bb1);CHKERRQ(ierr);
2511b1a666ecSBarry Smith 
2512b1a666ecSBarry Smith       /* local sweep */
2513b1a666ecSBarry Smith       ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_FORWARD_SWEEP,fshift,lits,1,xx);CHKERRQ(ierr);
2514b1a666ecSBarry Smith     }
2515b1a666ecSBarry Smith   } else if (flag & SOR_LOCAL_BACKWARD_SWEEP){
2516b1a666ecSBarry Smith     if (flag & SOR_ZERO_INITIAL_GUESS) {
2517b1a666ecSBarry Smith       ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr);
2518b1a666ecSBarry Smith       its--;
2519b1a666ecSBarry Smith     }
2520b1a666ecSBarry Smith     while (its--) {
2521b1a666ecSBarry Smith       ierr = VecScatterBegin(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
2522b1a666ecSBarry Smith       ierr = VecScatterEnd(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
2523b1a666ecSBarry Smith 
2524b1a666ecSBarry Smith       /* update rhs: bb1 = bb - B*x */
2525b1a666ecSBarry Smith       ierr = VecScale(mat->lvec,-1.0);CHKERRQ(ierr);
2526b1a666ecSBarry Smith       ierr = (*mat->B->ops->multadd)(mat->B,mat->lvec,bb,bb1);CHKERRQ(ierr);
2527b1a666ecSBarry Smith 
2528b1a666ecSBarry Smith       /* local sweep */
2529b1a666ecSBarry Smith       ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_BACKWARD_SWEEP,fshift,lits,1,xx);CHKERRQ(ierr);
2530b1a666ecSBarry Smith     }
2531e7e72b3dSBarry Smith   } else SETERRQ(((PetscObject)matin)->comm,PETSC_ERR_SUP,"Parallel version of SOR requested not supported");
2532b1a666ecSBarry Smith 
2533b1a666ecSBarry Smith   if (bb1) {ierr = VecDestroy(bb1);CHKERRQ(ierr);}
2534b1a666ecSBarry Smith   PetscFunctionReturn(0);
2535b1a666ecSBarry Smith }
2536b1a666ecSBarry Smith 
2537f6d58c54SBarry Smith extern PetscErrorCode PETSCMAT_DLLEXPORT MatFDColoringApply_BAIJ(Mat,MatFDColoring,Vec,MatStructure*,void*);
2538f6d58c54SBarry Smith 
25398c7482ecSBarry Smith 
254079bdfe76SSatish Balay /* -------------------------------------------------------------------*/
2541cc2dc46cSBarry Smith static struct _MatOps MatOps_Values = {
2542cc2dc46cSBarry Smith        MatSetValues_MPIBAIJ,
2543cc2dc46cSBarry Smith        MatGetRow_MPIBAIJ,
2544cc2dc46cSBarry Smith        MatRestoreRow_MPIBAIJ,
2545cc2dc46cSBarry Smith        MatMult_MPIBAIJ,
254697304618SKris Buschelman /* 4*/ MatMultAdd_MPIBAIJ,
25477c922b88SBarry Smith        MatMultTranspose_MPIBAIJ,
25487c922b88SBarry Smith        MatMultTransposeAdd_MPIBAIJ,
2549cc2dc46cSBarry Smith        0,
2550cc2dc46cSBarry Smith        0,
2551cc2dc46cSBarry Smith        0,
255297304618SKris Buschelman /*10*/ 0,
2553cc2dc46cSBarry Smith        0,
2554cc2dc46cSBarry Smith        0,
2555b1a666ecSBarry Smith        MatSOR_MPIBAIJ,
2556cc2dc46cSBarry Smith        MatTranspose_MPIBAIJ,
255797304618SKris Buschelman /*15*/ MatGetInfo_MPIBAIJ,
25587fc3c18eSBarry Smith        MatEqual_MPIBAIJ,
2559cc2dc46cSBarry Smith        MatGetDiagonal_MPIBAIJ,
2560cc2dc46cSBarry Smith        MatDiagonalScale_MPIBAIJ,
2561cc2dc46cSBarry Smith        MatNorm_MPIBAIJ,
256297304618SKris Buschelman /*20*/ MatAssemblyBegin_MPIBAIJ,
2563cc2dc46cSBarry Smith        MatAssemblyEnd_MPIBAIJ,
2564cc2dc46cSBarry Smith        MatSetOption_MPIBAIJ,
2565cc2dc46cSBarry Smith        MatZeroEntries_MPIBAIJ,
2566d519adbfSMatthew Knepley /*24*/ MatZeroRows_MPIBAIJ,
2567cc2dc46cSBarry Smith        0,
2568cc2dc46cSBarry Smith        0,
2569cc2dc46cSBarry Smith        0,
2570cc2dc46cSBarry Smith        0,
2571d519adbfSMatthew Knepley /*29*/ MatSetUpPreallocation_MPIBAIJ,
2572273d9f13SBarry Smith        0,
2573cc2dc46cSBarry Smith        0,
2574cc2dc46cSBarry Smith        0,
2575cc2dc46cSBarry Smith        0,
2576d519adbfSMatthew Knepley /*34*/ MatDuplicate_MPIBAIJ,
2577cc2dc46cSBarry Smith        0,
2578cc2dc46cSBarry Smith        0,
2579cc2dc46cSBarry Smith        0,
2580cc2dc46cSBarry Smith        0,
2581d519adbfSMatthew Knepley /*39*/ MatAXPY_MPIBAIJ,
2582cc2dc46cSBarry Smith        MatGetSubMatrices_MPIBAIJ,
2583cc2dc46cSBarry Smith        MatIncreaseOverlap_MPIBAIJ,
2584cc2dc46cSBarry Smith        MatGetValues_MPIBAIJ,
25853c896bc6SHong Zhang        MatCopy_MPIBAIJ,
2586d519adbfSMatthew Knepley /*44*/ 0,
2587cc2dc46cSBarry Smith        MatScale_MPIBAIJ,
2588cc2dc46cSBarry Smith        0,
2589cc2dc46cSBarry Smith        0,
2590cc2dc46cSBarry Smith        0,
259141c166b1SJed Brown /*49*/ MatSetBlockSize_MPIBAIJ,
2592cc2dc46cSBarry Smith        0,
2593cc2dc46cSBarry Smith        0,
2594cc2dc46cSBarry Smith        0,
2595cc2dc46cSBarry Smith        0,
2596f6d58c54SBarry Smith /*54*/ MatFDColoringCreate_MPIBAIJ,
2597cc2dc46cSBarry Smith        0,
2598cc2dc46cSBarry Smith        MatSetUnfactored_MPIBAIJ,
259982094794SBarry Smith        MatPermute_MPIBAIJ,
2600cc2dc46cSBarry Smith        MatSetValuesBlocked_MPIBAIJ,
2601d519adbfSMatthew Knepley /*59*/ MatGetSubMatrix_MPIBAIJ,
2602f14a1c24SBarry Smith        MatDestroy_MPIBAIJ,
2603f14a1c24SBarry Smith        MatView_MPIBAIJ,
2604357abbc8SBarry Smith        0,
26057843d17aSBarry Smith        0,
2606d519adbfSMatthew Knepley /*64*/ 0,
26077843d17aSBarry Smith        0,
26087843d17aSBarry Smith        0,
26097843d17aSBarry Smith        0,
26107843d17aSBarry Smith        0,
2611d519adbfSMatthew Knepley /*69*/ MatGetRowMaxAbs_MPIBAIJ,
26127843d17aSBarry Smith        0,
261397304618SKris Buschelman        0,
261497304618SKris Buschelman        0,
261597304618SKris Buschelman        0,
2616d519adbfSMatthew Knepley /*74*/ 0,
2617f6d58c54SBarry Smith        MatFDColoringApply_BAIJ,
261897304618SKris Buschelman        0,
261997304618SKris Buschelman        0,
262097304618SKris Buschelman        0,
2621d519adbfSMatthew Knepley /*79*/ 0,
262297304618SKris Buschelman        0,
262397304618SKris Buschelman        0,
262497304618SKris Buschelman        0,
2625865e5f61SKris Buschelman        MatLoad_MPIBAIJ,
2626d519adbfSMatthew Knepley /*84*/ 0,
2627865e5f61SKris Buschelman        0,
2628865e5f61SKris Buschelman        0,
2629865e5f61SKris Buschelman        0,
2630865e5f61SKris Buschelman        0,
2631d519adbfSMatthew Knepley /*89*/ 0,
2632865e5f61SKris Buschelman        0,
2633865e5f61SKris Buschelman        0,
2634865e5f61SKris Buschelman        0,
2635865e5f61SKris Buschelman        0,
2636d519adbfSMatthew Knepley /*94*/ 0,
2637865e5f61SKris Buschelman        0,
2638865e5f61SKris Buschelman        0,
263999cafbc1SBarry Smith        0,
264099cafbc1SBarry Smith        0,
2641d519adbfSMatthew Knepley /*99*/ 0,
264299cafbc1SBarry Smith        0,
264399cafbc1SBarry Smith        0,
264499cafbc1SBarry Smith        0,
264599cafbc1SBarry Smith        0,
2646d519adbfSMatthew Knepley /*104*/0,
264799cafbc1SBarry Smith        MatRealPart_MPIBAIJ,
26488c7482ecSBarry Smith        MatImaginaryPart_MPIBAIJ,
26498c7482ecSBarry Smith        0,
26508c7482ecSBarry Smith        0,
2651d519adbfSMatthew Knepley /*109*/0,
26528c7482ecSBarry Smith        0,
26538c7482ecSBarry Smith        0,
26548c7482ecSBarry Smith        0,
26558c7482ecSBarry Smith        0,
2656f6d58c54SBarry Smith /*114*/MatGetSeqNonzerostructure_MPIBAIJ,
26578c7482ecSBarry Smith        0,
26588c7482ecSBarry Smith        MatGetGhosts_MPIBAIJ
26598c7482ecSBarry Smith };
266079bdfe76SSatish Balay 
2661e18c124aSSatish Balay EXTERN_C_BEGIN
26624a2ae208SSatish Balay #undef __FUNCT__
26634a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonalBlock_MPIBAIJ"
2664be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatGetDiagonalBlock_MPIBAIJ(Mat A,PetscTruth *iscopy,MatReuse reuse,Mat *a)
26655ef9f2a5SBarry Smith {
26665ef9f2a5SBarry Smith   PetscFunctionBegin;
26675ef9f2a5SBarry Smith   *a      = ((Mat_MPIBAIJ *)A->data)->A;
26685ef9f2a5SBarry Smith   *iscopy = PETSC_FALSE;
26695ef9f2a5SBarry Smith   PetscFunctionReturn(0);
26705ef9f2a5SBarry Smith }
2671e18c124aSSatish Balay EXTERN_C_END
267279bdfe76SSatish Balay 
2673273d9f13SBarry Smith EXTERN_C_BEGIN
2674f69a0ea3SMatthew Knepley extern PetscErrorCode PETSCMAT_DLLEXPORT MatConvert_MPIBAIJ_MPISBAIJ(Mat, MatType,MatReuse,Mat*);
2675d94109b8SHong Zhang EXTERN_C_END
2676d94109b8SHong Zhang 
2677b8d659d7SLisandro Dalcin EXTERN_C_BEGIN
2678aac34f13SBarry Smith #undef __FUNCT__
2679aac34f13SBarry Smith #define __FUNCT__ "MatMPIBAIJSetPreallocationCSR_MPIBAIJ"
2680cf12db73SBarry Smith PetscErrorCode MatMPIBAIJSetPreallocationCSR_MPIBAIJ(Mat B,PetscInt bs,const PetscInt ii[],const PetscInt jj[],const PetscScalar V[])
2681aac34f13SBarry Smith {
2682b8d659d7SLisandro Dalcin   PetscInt       m,rstart,cstart,cend;
2683b8d659d7SLisandro Dalcin   PetscInt       i,j,d,nz,nz_max=0,*d_nnz=0,*o_nnz=0;
2684b8d659d7SLisandro Dalcin   const PetscInt *JJ=0;
2685b8d659d7SLisandro Dalcin   PetscScalar    *values=0;
2686aac34f13SBarry Smith   PetscErrorCode ierr;
2687aac34f13SBarry Smith 
2688aac34f13SBarry Smith   PetscFunctionBegin;
2689b8d659d7SLisandro Dalcin 
269065e19b50SBarry Smith   if (bs < 1) SETERRQ1(((PetscObject)B)->comm,PETSC_ERR_ARG_OUTOFRANGE,"Invalid block size specified, must be positive but it is %D",bs);
269126283091SBarry Smith   ierr = PetscLayoutSetBlockSize(B->rmap,bs);CHKERRQ(ierr);
269226283091SBarry Smith   ierr = PetscLayoutSetBlockSize(B->cmap,bs);CHKERRQ(ierr);
269326283091SBarry Smith   ierr = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr);
269426283091SBarry Smith   ierr = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr);
2695d0f46423SBarry Smith   m      = B->rmap->n/bs;
2696d0f46423SBarry Smith   rstart = B->rmap->rstart/bs;
2697d0f46423SBarry Smith   cstart = B->cmap->rstart/bs;
2698d0f46423SBarry Smith   cend   = B->cmap->rend/bs;
2699b8d659d7SLisandro Dalcin 
2700e32f2f54SBarry Smith   if (ii[0]) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"ii[0] must be 0 but it is %D",ii[0]);
2701fca92195SBarry Smith   ierr  = PetscMalloc2(m,PetscInt,&d_nnz,m,PetscInt,&o_nnz);CHKERRQ(ierr);
2702aac34f13SBarry Smith   for (i=0; i<m; i++) {
2703cf12db73SBarry Smith     nz = ii[i+1] - ii[i];
2704e32f2f54SBarry Smith     if (nz < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Local row %D has a negative number of columns %D",i,nz);
2705b8d659d7SLisandro Dalcin     nz_max = PetscMax(nz_max,nz);
2706cf12db73SBarry Smith     JJ  = jj + ii[i];
2707b8d659d7SLisandro Dalcin     for (j=0; j<nz; j++) {
2708aac34f13SBarry Smith       if (*JJ >= cstart) break;
2709aac34f13SBarry Smith       JJ++;
2710aac34f13SBarry Smith     }
2711aac34f13SBarry Smith     d = 0;
2712b8d659d7SLisandro Dalcin     for (; j<nz; j++) {
2713aac34f13SBarry Smith       if (*JJ++ >= cend) break;
2714aac34f13SBarry Smith       d++;
2715aac34f13SBarry Smith     }
2716aac34f13SBarry Smith     d_nnz[i] = d;
2717b8d659d7SLisandro Dalcin     o_nnz[i] = nz - d;
2718aac34f13SBarry Smith   }
2719aac34f13SBarry Smith   ierr = MatMPIBAIJSetPreallocation(B,bs,0,d_nnz,0,o_nnz);CHKERRQ(ierr);
2720fca92195SBarry Smith   ierr = PetscFree2(d_nnz,o_nnz);CHKERRQ(ierr);
2721aac34f13SBarry Smith 
2722b8d659d7SLisandro Dalcin   values = (PetscScalar*)V;
2723b8d659d7SLisandro Dalcin   if (!values) {
2724fca92195SBarry Smith     ierr = PetscMalloc(bs*bs*nz_max*sizeof(PetscScalar),&values);CHKERRQ(ierr);
2725b8d659d7SLisandro Dalcin     ierr = PetscMemzero(values,bs*bs*nz_max*sizeof(PetscScalar));CHKERRQ(ierr);
2726b8d659d7SLisandro Dalcin   }
2727b8d659d7SLisandro Dalcin   for (i=0; i<m; i++) {
2728b8d659d7SLisandro Dalcin     PetscInt          row    = i + rstart;
2729cf12db73SBarry Smith     PetscInt          ncols  = ii[i+1] - ii[i];
2730cf12db73SBarry Smith     const PetscInt    *icols = jj + ii[i];
2731cf12db73SBarry Smith     const PetscScalar *svals = values + (V ? (bs*bs*ii[i]) : 0);
2732b8d659d7SLisandro Dalcin     ierr = MatSetValuesBlocked_MPIBAIJ(B,1,&row,ncols,icols,svals,INSERT_VALUES);CHKERRQ(ierr);
2733aac34f13SBarry Smith   }
2734aac34f13SBarry Smith 
2735b8d659d7SLisandro Dalcin   if (!V) { ierr = PetscFree(values);CHKERRQ(ierr); }
2736aac34f13SBarry Smith   ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
2737aac34f13SBarry Smith   ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
2738aac34f13SBarry Smith 
2739aac34f13SBarry Smith   PetscFunctionReturn(0);
2740aac34f13SBarry Smith }
2741b8d659d7SLisandro Dalcin EXTERN_C_END
2742aac34f13SBarry Smith 
2743aac34f13SBarry Smith #undef __FUNCT__
2744aac34f13SBarry Smith #define __FUNCT__ "MatMPIBAIJSetPreallocationCSR"
2745aac34f13SBarry Smith /*@C
2746aac34f13SBarry Smith    MatMPIBAIJSetPreallocationCSR - Allocates memory for a sparse parallel matrix in AIJ format
2747aac34f13SBarry Smith    (the default parallel PETSc format).
2748aac34f13SBarry Smith 
2749aac34f13SBarry Smith    Collective on MPI_Comm
2750aac34f13SBarry Smith 
2751aac34f13SBarry Smith    Input Parameters:
2752aac34f13SBarry Smith +  A - the matrix
2753aac34f13SBarry Smith .  i - the indices into j for the start of each local row (starts with zero)
2754aac34f13SBarry Smith .  j - the column indices for each local row (starts with zero) these must be sorted for each row
2755aac34f13SBarry Smith -  v - optional values in the matrix
2756aac34f13SBarry Smith 
2757aac34f13SBarry Smith    Level: developer
2758aac34f13SBarry Smith 
2759aac34f13SBarry Smith .keywords: matrix, aij, compressed row, sparse, parallel
2760aac34f13SBarry Smith 
2761aac34f13SBarry Smith .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatMPIBAIJSetPreallocation(), MatCreateMPIAIJ(), MPIAIJ
2762aac34f13SBarry Smith @*/
2763be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPIBAIJSetPreallocationCSR(Mat B,PetscInt bs,const PetscInt i[],const PetscInt j[], const PetscScalar v[])
2764aac34f13SBarry Smith {
2765aac34f13SBarry Smith   PetscErrorCode ierr,(*f)(Mat,PetscInt,const PetscInt[],const PetscInt[],const PetscScalar[]);
2766aac34f13SBarry Smith 
2767aac34f13SBarry Smith   PetscFunctionBegin;
2768aac34f13SBarry Smith   ierr = PetscObjectQueryFunction((PetscObject)B,"MatMPIBAIJSetPreallocationCSR_C",(void (**)(void))&f);CHKERRQ(ierr);
2769aac34f13SBarry Smith   if (f) {
2770aac34f13SBarry Smith     ierr = (*f)(B,bs,i,j,v);CHKERRQ(ierr);
2771aac34f13SBarry Smith   }
2772aac34f13SBarry Smith   PetscFunctionReturn(0);
2773aac34f13SBarry Smith }
2774aac34f13SBarry Smith 
2775d94109b8SHong Zhang EXTERN_C_BEGIN
27764a2ae208SSatish Balay #undef __FUNCT__
2777a23d5eceSKris Buschelman #define __FUNCT__ "MatMPIBAIJSetPreallocation_MPIBAIJ"
2778be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPIBAIJSetPreallocation_MPIBAIJ(Mat B,PetscInt bs,PetscInt d_nz,PetscInt *d_nnz,PetscInt o_nz,PetscInt *o_nnz)
2779a23d5eceSKris Buschelman {
2780a23d5eceSKris Buschelman   Mat_MPIBAIJ    *b;
2781dfbe8321SBarry Smith   PetscErrorCode ierr;
2782db4efbfdSBarry Smith   PetscInt       i, newbs = PetscAbs(bs);
2783a23d5eceSKris Buschelman 
2784a23d5eceSKris Buschelman   PetscFunctionBegin;
2785db4efbfdSBarry Smith   if (bs < 0) {
27867adad957SLisandro Dalcin     ierr = PetscOptionsBegin(((PetscObject)B)->comm,((PetscObject)B)->prefix,"Options for MPIBAIJ matrix","Mat");CHKERRQ(ierr);
2787db4efbfdSBarry Smith       ierr = PetscOptionsInt("-mat_block_size","Set the blocksize used to store the matrix","MatMPIBAIJSetPreallocation",newbs,&newbs,PETSC_NULL);CHKERRQ(ierr);
27888c07d4e3SBarry Smith     ierr = PetscOptionsEnd();CHKERRQ(ierr);
2789db4efbfdSBarry Smith     bs   = PetscAbs(bs);
2790db4efbfdSBarry Smith   }
2791e7e72b3dSBarry Smith   if ((d_nnz || o_nnz) && newbs != bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Cannot change blocksize from command line if setting d_nnz or o_nnz");
2792db4efbfdSBarry Smith   bs = newbs;
2793db4efbfdSBarry Smith 
2794a23d5eceSKris Buschelman 
2795e7e72b3dSBarry Smith   if (bs < 1) SETERRQ(((PetscObject)B)->comm,PETSC_ERR_ARG_OUTOFRANGE,"Invalid block size specified, must be positive");
2796a23d5eceSKris Buschelman   if (d_nz == PETSC_DEFAULT || d_nz == PETSC_DECIDE) d_nz = 5;
2797a23d5eceSKris Buschelman   if (o_nz == PETSC_DEFAULT || o_nz == PETSC_DECIDE) o_nz = 2;
2798e32f2f54SBarry Smith   if (d_nz < 0) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"d_nz cannot be less than 0: value %D",d_nz);
2799e32f2f54SBarry Smith   if (o_nz < 0) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"o_nz cannot be less than 0: value %D",o_nz);
2800899cda47SBarry Smith 
280126283091SBarry Smith   ierr = PetscLayoutSetBlockSize(B->rmap,bs);CHKERRQ(ierr);
280226283091SBarry Smith   ierr = PetscLayoutSetBlockSize(B->cmap,bs);CHKERRQ(ierr);
280326283091SBarry Smith   ierr = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr);
280426283091SBarry Smith   ierr = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr);
2805899cda47SBarry Smith 
2806a23d5eceSKris Buschelman   if (d_nnz) {
2807d0f46423SBarry Smith     for (i=0; i<B->rmap->n/bs; i++) {
2808e32f2f54SBarry Smith       if (d_nnz[i] < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"d_nnz cannot be less than -1: local row %D value %D",i,d_nnz[i]);
2809a23d5eceSKris Buschelman     }
2810a23d5eceSKris Buschelman   }
2811a23d5eceSKris Buschelman   if (o_nnz) {
2812d0f46423SBarry Smith     for (i=0; i<B->rmap->n/bs; i++) {
2813e32f2f54SBarry Smith       if (o_nnz[i] < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"o_nnz cannot be less than -1: local row %D value %D",i,o_nnz[i]);
2814a23d5eceSKris Buschelman     }
2815a23d5eceSKris Buschelman   }
2816a23d5eceSKris Buschelman 
2817a23d5eceSKris Buschelman   b = (Mat_MPIBAIJ*)B->data;
2818a23d5eceSKris Buschelman   b->bs2 = bs*bs;
2819d0f46423SBarry Smith   b->mbs = B->rmap->n/bs;
2820d0f46423SBarry Smith   b->nbs = B->cmap->n/bs;
2821d0f46423SBarry Smith   b->Mbs = B->rmap->N/bs;
2822d0f46423SBarry Smith   b->Nbs = B->cmap->N/bs;
2823a23d5eceSKris Buschelman 
2824a23d5eceSKris Buschelman   for (i=0; i<=b->size; i++) {
2825d0f46423SBarry Smith     b->rangebs[i] = B->rmap->range[i]/bs;
2826a23d5eceSKris Buschelman   }
2827d0f46423SBarry Smith   b->rstartbs = B->rmap->rstart/bs;
2828d0f46423SBarry Smith   b->rendbs   = B->rmap->rend/bs;
2829d0f46423SBarry Smith   b->cstartbs = B->cmap->rstart/bs;
2830d0f46423SBarry Smith   b->cendbs   = B->cmap->rend/bs;
2831a23d5eceSKris Buschelman 
2832526dfc15SBarry Smith   if (!B->preallocated) {
2833f69a0ea3SMatthew Knepley     ierr = MatCreate(PETSC_COMM_SELF,&b->A);CHKERRQ(ierr);
2834d0f46423SBarry Smith     ierr = MatSetSizes(b->A,B->rmap->n,B->cmap->n,B->rmap->n,B->cmap->n);CHKERRQ(ierr);
28359c097c71SKris Buschelman     ierr = MatSetType(b->A,MATSEQBAIJ);CHKERRQ(ierr);
283652e6d16bSBarry Smith     ierr = PetscLogObjectParent(B,b->A);CHKERRQ(ierr);
2837f69a0ea3SMatthew Knepley     ierr = MatCreate(PETSC_COMM_SELF,&b->B);CHKERRQ(ierr);
2838d0f46423SBarry Smith     ierr = MatSetSizes(b->B,B->rmap->n,B->cmap->N,B->rmap->n,B->cmap->N);CHKERRQ(ierr);
28399c097c71SKris Buschelman     ierr = MatSetType(b->B,MATSEQBAIJ);CHKERRQ(ierr);
284052e6d16bSBarry Smith     ierr = PetscLogObjectParent(B,b->B);CHKERRQ(ierr);
28417adad957SLisandro Dalcin     ierr = MatStashCreate_Private(((PetscObject)B)->comm,bs,&B->bstash);CHKERRQ(ierr);
2842526dfc15SBarry Smith   }
2843a23d5eceSKris Buschelman 
2844526dfc15SBarry Smith   ierr = MatSeqBAIJSetPreallocation(b->A,bs,d_nz,d_nnz);CHKERRQ(ierr);
2845526dfc15SBarry Smith   ierr = MatSeqBAIJSetPreallocation(b->B,bs,o_nz,o_nnz);CHKERRQ(ierr);
2846526dfc15SBarry Smith   B->preallocated = PETSC_TRUE;
2847a23d5eceSKris Buschelman   PetscFunctionReturn(0);
2848a23d5eceSKris Buschelman }
2849a23d5eceSKris Buschelman EXTERN_C_END
2850a23d5eceSKris Buschelman 
2851a23d5eceSKris Buschelman EXTERN_C_BEGIN
2852be1d678aSKris Buschelman EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatDiagonalScaleLocal_MPIBAIJ(Mat,Vec);
2853be1d678aSKris Buschelman EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatSetHashTableFactor_MPIBAIJ(Mat,PetscReal);
285492b32695SKris Buschelman EXTERN_C_END
28555bf65638SKris Buschelman 
285682094794SBarry Smith 
285782094794SBarry Smith EXTERN_C_BEGIN
285882094794SBarry Smith #undef __FUNCT__
285982094794SBarry Smith #define __FUNCT__ "MatConvert_MPIBAIJ_MPIAdj"
286082094794SBarry Smith PetscErrorCode PETSCMAT_DLLEXPORT MatConvert_MPIBAIJ_MPIAdj(Mat B, const MatType newtype,MatReuse reuse,Mat *adj)
286182094794SBarry Smith {
286282094794SBarry Smith   Mat_MPIBAIJ    *b = (Mat_MPIBAIJ*)B->data;
286382094794SBarry Smith   PetscErrorCode ierr;
286482094794SBarry Smith   Mat_SeqBAIJ    *d = (Mat_SeqBAIJ*) b->A->data,*o = (Mat_SeqBAIJ*) b->B->data;
286582094794SBarry Smith   PetscInt       M = B->rmap->n/B->rmap->bs,i,*ii,*jj,cnt,j,k,rstart = B->rmap->rstart/B->rmap->bs;
286682094794SBarry Smith   const PetscInt *id = d->i, *jd = d->j, *io = o->i, *jo = o->j, *garray = b->garray;
286782094794SBarry Smith 
286882094794SBarry Smith   PetscFunctionBegin;
286982094794SBarry Smith   ierr = PetscMalloc((M+1)*sizeof(PetscInt),&ii);CHKERRQ(ierr);
287082094794SBarry Smith   ii[0] = 0;
287182094794SBarry Smith   CHKMEMQ;
287282094794SBarry Smith   for (i=0; i<M; i++) {
2873e32f2f54SBarry Smith     if ((id[i+1] - id[i]) < 0) SETERRQ3(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Indices wrong %D %D %D",i,id[i],id[i+1]);
2874e32f2f54SBarry Smith     if ((io[i+1] - io[i]) < 0) SETERRQ3(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Indices wrong %D %D %D",i,io[i],io[i+1]);
287582094794SBarry Smith     ii[i+1] = ii[i] + id[i+1] - id[i] + io[i+1] - io[i];
287682094794SBarry Smith     /* remove one from count of matrix has diagonal */
287782094794SBarry Smith     for (j=id[i]; j<id[i+1]; j++) {
287882094794SBarry Smith       if (jd[j] == i) {ii[i+1]--;break;}
287982094794SBarry Smith     }
288082094794SBarry Smith   CHKMEMQ;
288182094794SBarry Smith   }
288282094794SBarry Smith   ierr = PetscMalloc(ii[M]*sizeof(PetscInt),&jj);CHKERRQ(ierr);
288382094794SBarry Smith   cnt = 0;
288482094794SBarry Smith   for (i=0; i<M; i++) {
288582094794SBarry Smith     for (j=io[i]; j<io[i+1]; j++) {
288682094794SBarry Smith       if (garray[jo[j]] > rstart) break;
288782094794SBarry Smith       jj[cnt++] = garray[jo[j]];
288882094794SBarry Smith   CHKMEMQ;
288982094794SBarry Smith     }
289082094794SBarry Smith     for (k=id[i]; k<id[i+1]; k++) {
289182094794SBarry Smith       if (jd[k] != i) {
289282094794SBarry Smith         jj[cnt++] = rstart + jd[k];
289382094794SBarry Smith   CHKMEMQ;
289482094794SBarry Smith       }
289582094794SBarry Smith     }
289682094794SBarry Smith     for (;j<io[i+1]; j++) {
289782094794SBarry Smith       jj[cnt++] = garray[jo[j]];
289882094794SBarry Smith   CHKMEMQ;
289982094794SBarry Smith     }
290082094794SBarry Smith   }
290182094794SBarry Smith   ierr = MatCreateMPIAdj(((PetscObject)B)->comm,M,B->cmap->N/B->rmap->bs,ii,jj,PETSC_NULL,adj);CHKERRQ(ierr);
290282094794SBarry Smith   PetscFunctionReturn(0);
290382094794SBarry Smith }
2904dbf0e21dSBarry Smith EXTERN_C_END
290582094794SBarry Smith 
2906450b117fSShri Abhyankar EXTERN_C_BEGIN
2907450b117fSShri Abhyankar #if defined(PETSC_HAVE_MUMPS)
2908*bccb9932SShri Abhyankar extern PetscErrorCode MatGetFactor_baij_mumps(Mat,MatFactorType,Mat*);
2909450b117fSShri Abhyankar #endif
2910450b117fSShri Abhyankar EXTERN_C_END
2911450b117fSShri Abhyankar 
29120bad9183SKris Buschelman /*MC
2913fafad747SKris Buschelman    MATMPIBAIJ - MATMPIBAIJ = "mpibaij" - A matrix type to be used for distributed block sparse matrices.
29140bad9183SKris Buschelman 
29150bad9183SKris Buschelman    Options Database Keys:
29168c07d4e3SBarry Smith + -mat_type mpibaij - sets the matrix type to "mpibaij" during a call to MatSetFromOptions()
29178c07d4e3SBarry Smith . -mat_block_size <bs> - set the blocksize used to store the matrix
29188c07d4e3SBarry Smith - -mat_use_hash_table <fact>
29190bad9183SKris Buschelman 
29200bad9183SKris Buschelman   Level: beginner
29210bad9183SKris Buschelman 
29220bad9183SKris Buschelman .seealso: MatCreateMPIBAIJ
29230bad9183SKris Buschelman M*/
29240bad9183SKris Buschelman 
292592b32695SKris Buschelman EXTERN_C_BEGIN
2926a23d5eceSKris Buschelman #undef __FUNCT__
29274a2ae208SSatish Balay #define __FUNCT__ "MatCreate_MPIBAIJ"
2928be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreate_MPIBAIJ(Mat B)
2929273d9f13SBarry Smith {
2930273d9f13SBarry Smith   Mat_MPIBAIJ    *b;
2931dfbe8321SBarry Smith   PetscErrorCode ierr;
2932273d9f13SBarry Smith   PetscTruth     flg;
2933273d9f13SBarry Smith 
2934273d9f13SBarry Smith   PetscFunctionBegin;
293538f2d2fdSLisandro Dalcin   ierr = PetscNewLog(B,Mat_MPIBAIJ,&b);CHKERRQ(ierr);
293682502324SSatish Balay   B->data = (void*)b;
293782502324SSatish Balay 
2938085a36d4SBarry Smith 
2939273d9f13SBarry Smith   ierr    = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr);
2940273d9f13SBarry Smith   B->mapping    = 0;
2941273d9f13SBarry Smith   B->assembled  = PETSC_FALSE;
2942273d9f13SBarry Smith 
2943273d9f13SBarry Smith   B->insertmode = NOT_SET_VALUES;
29447adad957SLisandro Dalcin   ierr = MPI_Comm_rank(((PetscObject)B)->comm,&b->rank);CHKERRQ(ierr);
29457adad957SLisandro Dalcin   ierr = MPI_Comm_size(((PetscObject)B)->comm,&b->size);CHKERRQ(ierr);
2946273d9f13SBarry Smith 
2947273d9f13SBarry Smith   /* build local table of row and column ownerships */
2948899cda47SBarry Smith   ierr = PetscMalloc((b->size+1)*sizeof(PetscInt),&b->rangebs);CHKERRQ(ierr);
2949273d9f13SBarry Smith 
2950273d9f13SBarry Smith   /* build cache for off array entries formed */
29517adad957SLisandro Dalcin   ierr = MatStashCreate_Private(((PetscObject)B)->comm,1,&B->stash);CHKERRQ(ierr);
2952273d9f13SBarry Smith   b->donotstash  = PETSC_FALSE;
2953273d9f13SBarry Smith   b->colmap      = PETSC_NULL;
2954273d9f13SBarry Smith   b->garray      = PETSC_NULL;
2955273d9f13SBarry Smith   b->roworiented = PETSC_TRUE;
2956273d9f13SBarry Smith 
2957273d9f13SBarry Smith   /* stuff used in block assembly */
2958273d9f13SBarry Smith   b->barray       = 0;
2959273d9f13SBarry Smith 
2960273d9f13SBarry Smith   /* stuff used for matrix vector multiply */
2961273d9f13SBarry Smith   b->lvec         = 0;
2962273d9f13SBarry Smith   b->Mvctx        = 0;
2963273d9f13SBarry Smith 
2964273d9f13SBarry Smith   /* stuff for MatGetRow() */
2965273d9f13SBarry Smith   b->rowindices   = 0;
2966273d9f13SBarry Smith   b->rowvalues    = 0;
2967273d9f13SBarry Smith   b->getrowactive = PETSC_FALSE;
2968273d9f13SBarry Smith 
2969273d9f13SBarry Smith   /* hash table stuff */
2970273d9f13SBarry Smith   b->ht           = 0;
2971273d9f13SBarry Smith   b->hd           = 0;
2972273d9f13SBarry Smith   b->ht_size      = 0;
2973273d9f13SBarry Smith   b->ht_flag      = PETSC_FALSE;
2974273d9f13SBarry Smith   b->ht_fact      = 0;
2975273d9f13SBarry Smith   b->ht_total_ct  = 0;
2976273d9f13SBarry Smith   b->ht_insert_ct = 0;
2977273d9f13SBarry Smith 
29787adad957SLisandro Dalcin   ierr = PetscOptionsBegin(((PetscObject)B)->comm,PETSC_NULL,"Options for loading MPIBAIJ matrix 1","Mat");CHKERRQ(ierr);
29798c07d4e3SBarry Smith     ierr = PetscOptionsTruth("-mat_use_hash_table","Use hash table to save memory in constructing matrix","MatSetOption",PETSC_FALSE,&flg,PETSC_NULL);CHKERRQ(ierr);
2980273d9f13SBarry Smith     if (flg) {
2981f6275e2eSBarry Smith       PetscReal fact = 1.39;
29824e0d8c25SBarry Smith       ierr = MatSetOption(B,MAT_USE_HASH_TABLE,PETSC_TRUE);CHKERRQ(ierr);
29838c07d4e3SBarry Smith       ierr = PetscOptionsReal("-mat_use_hash_table","Use hash table factor","MatMPIBAIJSetHashTableFactor",fact,&fact,PETSC_NULL);CHKERRQ(ierr);
2984273d9f13SBarry Smith       if (fact <= 1.0) fact = 1.39;
2985273d9f13SBarry Smith       ierr = MatMPIBAIJSetHashTableFactor(B,fact);CHKERRQ(ierr);
29861e2582c4SBarry Smith       ierr = PetscInfo1(B,"Hash table Factor used %5.2f\n",fact);CHKERRQ(ierr);
2987273d9f13SBarry Smith     }
29888c07d4e3SBarry Smith   ierr = PetscOptionsEnd();CHKERRQ(ierr);
29898c07d4e3SBarry Smith 
2990450b117fSShri Abhyankar #if defined(PETSC_HAVE_MUMPS)
2991*bccb9932SShri Abhyankar   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetFactor_mumps_C", "MatGetFactor_baij_mumps",MatGetFactor_baij_mumps);CHKERRQ(ierr);
2992450b117fSShri Abhyankar #endif
299382094794SBarry Smith   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatConvert_mpibaij_mpiadj_C",
299482094794SBarry Smith                                      "MatConvert_MPIBAIJ_MPIAdj",
299582094794SBarry Smith                                       MatConvert_MPIBAIJ_MPIAdj);CHKERRQ(ierr);
2996273d9f13SBarry Smith   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatStoreValues_C",
2997273d9f13SBarry Smith                                      "MatStoreValues_MPIBAIJ",
2998273d9f13SBarry Smith                                      MatStoreValues_MPIBAIJ);CHKERRQ(ierr);
2999273d9f13SBarry Smith   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatRetrieveValues_C",
3000273d9f13SBarry Smith                                      "MatRetrieveValues_MPIBAIJ",
3001273d9f13SBarry Smith                                      MatRetrieveValues_MPIBAIJ);CHKERRQ(ierr);
3002273d9f13SBarry Smith   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetDiagonalBlock_C",
3003273d9f13SBarry Smith                                      "MatGetDiagonalBlock_MPIBAIJ",
3004273d9f13SBarry Smith                                      MatGetDiagonalBlock_MPIBAIJ);CHKERRQ(ierr);
3005a23d5eceSKris Buschelman   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatMPIBAIJSetPreallocation_C",
3006a23d5eceSKris Buschelman                                      "MatMPIBAIJSetPreallocation_MPIBAIJ",
3007a23d5eceSKris Buschelman                                      MatMPIBAIJSetPreallocation_MPIBAIJ);CHKERRQ(ierr);
3008aac34f13SBarry Smith   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatMPIBAIJSetPreallocationCSR_C",
300944ec7894SLisandro Dalcin 				     "MatMPIBAIJSetPreallocationCSR_MPIBAIJ",
3010aac34f13SBarry Smith 				     MatMPIBAIJSetPreallocationCSR_MPIBAIJ);CHKERRQ(ierr);
301192b32695SKris Buschelman   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatDiagonalScaleLocal_C",
301292b32695SKris Buschelman                                      "MatDiagonalScaleLocal_MPIBAIJ",
301392b32695SKris Buschelman                                      MatDiagonalScaleLocal_MPIBAIJ);CHKERRQ(ierr);
30145bf65638SKris Buschelman   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatSetHashTableFactor_C",
30155bf65638SKris Buschelman                                      "MatSetHashTableFactor_MPIBAIJ",
30165bf65638SKris Buschelman                                      MatSetHashTableFactor_MPIBAIJ);CHKERRQ(ierr);
301717667f90SBarry Smith   ierr = PetscObjectChangeTypeName((PetscObject)B,MATMPIBAIJ);CHKERRQ(ierr);
3018273d9f13SBarry Smith   PetscFunctionReturn(0);
3019273d9f13SBarry Smith }
3020273d9f13SBarry Smith EXTERN_C_END
3021273d9f13SBarry Smith 
3022209238afSKris Buschelman /*MC
3023002d173eSKris Buschelman    MATBAIJ - MATBAIJ = "baij" - A matrix type to be used for block sparse matrices.
3024209238afSKris Buschelman 
3025209238afSKris Buschelman    This matrix type is identical to MATSEQBAIJ when constructed with a single process communicator,
3026209238afSKris Buschelman    and MATMPIBAIJ otherwise.
3027209238afSKris Buschelman 
3028209238afSKris Buschelman    Options Database Keys:
3029209238afSKris Buschelman . -mat_type baij - sets the matrix type to "baij" during a call to MatSetFromOptions()
3030209238afSKris Buschelman 
3031209238afSKris Buschelman   Level: beginner
3032209238afSKris Buschelman 
3033aac34f13SBarry Smith .seealso: MatCreateMPIBAIJ(),MATSEQBAIJ,MATMPIBAIJ, MatMPIBAIJSetPreallocation(), MatMPIBAIJSetPreallocationCSR()
3034209238afSKris Buschelman M*/
3035209238afSKris Buschelman 
3036209238afSKris Buschelman EXTERN_C_BEGIN
3037209238afSKris Buschelman #undef __FUNCT__
3038209238afSKris Buschelman #define __FUNCT__ "MatCreate_BAIJ"
3039be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreate_BAIJ(Mat A)
3040dfbe8321SBarry Smith {
30416849ba73SBarry Smith   PetscErrorCode ierr;
3042b24ad042SBarry Smith   PetscMPIInt    size;
3043209238afSKris Buschelman 
3044209238afSKris Buschelman   PetscFunctionBegin;
30457adad957SLisandro Dalcin   ierr = MPI_Comm_size(((PetscObject)A)->comm,&size);CHKERRQ(ierr);
3046209238afSKris Buschelman   if (size == 1) {
3047209238afSKris Buschelman     ierr = MatSetType(A,MATSEQBAIJ);CHKERRQ(ierr);
3048209238afSKris Buschelman   } else {
3049209238afSKris Buschelman     ierr = MatSetType(A,MATMPIBAIJ);CHKERRQ(ierr);
3050209238afSKris Buschelman   }
3051209238afSKris Buschelman   PetscFunctionReturn(0);
3052209238afSKris Buschelman }
3053209238afSKris Buschelman EXTERN_C_END
3054209238afSKris Buschelman 
30554a2ae208SSatish Balay #undef __FUNCT__
30564a2ae208SSatish Balay #define __FUNCT__ "MatMPIBAIJSetPreallocation"
3057273d9f13SBarry Smith /*@C
3058aac34f13SBarry Smith    MatMPIBAIJSetPreallocation - Allocates memory for a sparse parallel matrix in block AIJ format
3059273d9f13SBarry Smith    (block compressed row).  For good matrix assembly performance
3060273d9f13SBarry Smith    the user should preallocate the matrix storage by setting the parameters
3061273d9f13SBarry Smith    d_nz (or d_nnz) and o_nz (or o_nnz).  By setting these parameters accurately,
3062273d9f13SBarry Smith    performance can be increased by more than a factor of 50.
3063273d9f13SBarry Smith 
3064273d9f13SBarry Smith    Collective on Mat
3065273d9f13SBarry Smith 
3066273d9f13SBarry Smith    Input Parameters:
3067273d9f13SBarry Smith +  A - the matrix
3068273d9f13SBarry Smith .  bs   - size of blockk
3069273d9f13SBarry Smith .  d_nz  - number of block nonzeros per block row in diagonal portion of local
3070273d9f13SBarry Smith            submatrix  (same for all local rows)
3071273d9f13SBarry Smith .  d_nnz - array containing the number of block nonzeros in the various block rows
3072273d9f13SBarry Smith            of the in diagonal portion of the local (possibly different for each block
3073273d9f13SBarry Smith            row) or PETSC_NULL.  You must leave room for the diagonal entry even if it is zero.
3074273d9f13SBarry Smith .  o_nz  - number of block nonzeros per block row in the off-diagonal portion of local
3075273d9f13SBarry Smith            submatrix (same for all local rows).
3076273d9f13SBarry Smith -  o_nnz - array containing the number of nonzeros in the various block rows of the
3077273d9f13SBarry Smith            off-diagonal portion of the local submatrix (possibly different for
3078273d9f13SBarry Smith            each block row) or PETSC_NULL.
3079273d9f13SBarry Smith 
308049a6f317SBarry Smith    If the *_nnz parameter is given then the *_nz parameter is ignored
3081273d9f13SBarry Smith 
3082273d9f13SBarry Smith    Options Database Keys:
30838c07d4e3SBarry Smith +   -mat_block_size - size of the blocks to use
30848c07d4e3SBarry Smith -   -mat_use_hash_table <fact>
3085273d9f13SBarry Smith 
3086273d9f13SBarry Smith    Notes:
3087273d9f13SBarry Smith    If PETSC_DECIDE or  PETSC_DETERMINE is used for a particular argument on one processor
3088273d9f13SBarry Smith    than it must be used on all processors that share the object for that argument.
3089273d9f13SBarry Smith 
3090273d9f13SBarry Smith    Storage Information:
3091273d9f13SBarry Smith    For a square global matrix we define each processor's diagonal portion
3092273d9f13SBarry Smith    to be its local rows and the corresponding columns (a square submatrix);
3093273d9f13SBarry Smith    each processor's off-diagonal portion encompasses the remainder of the
3094273d9f13SBarry Smith    local matrix (a rectangular submatrix).
3095273d9f13SBarry Smith 
3096273d9f13SBarry Smith    The user can specify preallocated storage for the diagonal part of
3097273d9f13SBarry Smith    the local submatrix with either d_nz or d_nnz (not both).  Set
3098273d9f13SBarry Smith    d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic
3099273d9f13SBarry Smith    memory allocation.  Likewise, specify preallocated storage for the
3100273d9f13SBarry Smith    off-diagonal part of the local submatrix with o_nz or o_nnz (not both).
3101273d9f13SBarry Smith 
3102273d9f13SBarry Smith    Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
3103273d9f13SBarry Smith    the figure below we depict these three local rows and all columns (0-11).
3104273d9f13SBarry Smith 
3105273d9f13SBarry Smith .vb
3106273d9f13SBarry Smith            0 1 2 3 4 5 6 7 8 9 10 11
3107273d9f13SBarry Smith           -------------------
3108273d9f13SBarry Smith    row 3  |  o o o d d d o o o o o o
3109273d9f13SBarry Smith    row 4  |  o o o d d d o o o o o o
3110273d9f13SBarry Smith    row 5  |  o o o d d d o o o o o o
3111273d9f13SBarry Smith           -------------------
3112273d9f13SBarry Smith .ve
3113273d9f13SBarry Smith 
3114273d9f13SBarry Smith    Thus, any entries in the d locations are stored in the d (diagonal)
3115273d9f13SBarry Smith    submatrix, and any entries in the o locations are stored in the
3116273d9f13SBarry Smith    o (off-diagonal) submatrix.  Note that the d and the o submatrices are
3117273d9f13SBarry Smith    stored simply in the MATSEQBAIJ format for compressed row storage.
3118273d9f13SBarry Smith 
3119273d9f13SBarry Smith    Now d_nz should indicate the number of block nonzeros per row in the d matrix,
3120273d9f13SBarry Smith    and o_nz should indicate the number of block nonzeros per row in the o matrix.
3121273d9f13SBarry Smith    In general, for PDE problems in which most nonzeros are near the diagonal,
3122273d9f13SBarry Smith    one expects d_nz >> o_nz.   For large problems you MUST preallocate memory
3123273d9f13SBarry Smith    or you will get TERRIBLE performance; see the users' manual chapter on
3124273d9f13SBarry Smith    matrices.
3125273d9f13SBarry Smith 
3126aa95bbe8SBarry Smith    You can call MatGetInfo() to get information on how effective the preallocation was;
3127aa95bbe8SBarry Smith    for example the fields mallocs,nz_allocated,nz_used,nz_unneeded;
3128aa95bbe8SBarry Smith    You can also run with the option -info and look for messages with the string
3129aa95bbe8SBarry Smith    malloc in them to see if additional memory allocation was needed.
3130aa95bbe8SBarry Smith 
3131273d9f13SBarry Smith    Level: intermediate
3132273d9f13SBarry Smith 
3133273d9f13SBarry Smith .keywords: matrix, block, aij, compressed row, sparse, parallel
3134273d9f13SBarry Smith 
3135aac34f13SBarry Smith .seealso: MatCreate(), MatCreateSeqBAIJ(), MatSetValues(), MatCreateMPIBAIJ(), MatMPIBAIJSetPreallocationCSR()
3136273d9f13SBarry Smith @*/
3137be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPIBAIJSetPreallocation(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[])
3138273d9f13SBarry Smith {
3139b24ad042SBarry Smith   PetscErrorCode ierr,(*f)(Mat,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[]);
3140273d9f13SBarry Smith 
3141273d9f13SBarry Smith   PetscFunctionBegin;
3142a23d5eceSKris Buschelman   ierr = PetscObjectQueryFunction((PetscObject)B,"MatMPIBAIJSetPreallocation_C",(void (**)(void))&f);CHKERRQ(ierr);
3143a23d5eceSKris Buschelman   if (f) {
3144a23d5eceSKris Buschelman     ierr = (*f)(B,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr);
3145273d9f13SBarry Smith   }
3146273d9f13SBarry Smith   PetscFunctionReturn(0);
3147273d9f13SBarry Smith }
3148273d9f13SBarry Smith 
31494a2ae208SSatish Balay #undef __FUNCT__
31504a2ae208SSatish Balay #define __FUNCT__ "MatCreateMPIBAIJ"
315179bdfe76SSatish Balay /*@C
315279bdfe76SSatish Balay    MatCreateMPIBAIJ - Creates a sparse parallel matrix in block AIJ format
315379bdfe76SSatish Balay    (block compressed row).  For good matrix assembly performance
315479bdfe76SSatish Balay    the user should preallocate the matrix storage by setting the parameters
315579bdfe76SSatish Balay    d_nz (or d_nnz) and o_nz (or o_nnz).  By setting these parameters accurately,
315679bdfe76SSatish Balay    performance can be increased by more than a factor of 50.
315779bdfe76SSatish Balay 
3158db81eaa0SLois Curfman McInnes    Collective on MPI_Comm
3159db81eaa0SLois Curfman McInnes 
316079bdfe76SSatish Balay    Input Parameters:
3161db81eaa0SLois Curfman McInnes +  comm - MPI communicator
316279bdfe76SSatish Balay .  bs   - size of blockk
316379bdfe76SSatish Balay .  m - number of local rows (or PETSC_DECIDE to have calculated if M is given)
316492e8d321SLois Curfman McInnes            This value should be the same as the local size used in creating the
316592e8d321SLois Curfman McInnes            y vector for the matrix-vector product y = Ax.
316692e8d321SLois Curfman McInnes .  n - number of local columns (or PETSC_DECIDE to have calculated if N is given)
316792e8d321SLois Curfman McInnes            This value should be the same as the local size used in creating the
316892e8d321SLois Curfman McInnes            x vector for the matrix-vector product y = Ax.
3169be79a94dSBarry Smith .  M - number of global rows (or PETSC_DETERMINE to have calculated if m is given)
3170be79a94dSBarry Smith .  N - number of global columns (or PETSC_DETERMINE to have calculated if n is given)
317147a75d0bSBarry Smith .  d_nz  - number of nonzero blocks per block row in diagonal portion of local
317279bdfe76SSatish Balay            submatrix  (same for all local rows)
317347a75d0bSBarry Smith .  d_nnz - array containing the number of nonzero blocks in the various block rows
317492e8d321SLois Curfman McInnes            of the in diagonal portion of the local (possibly different for each block
3175db81eaa0SLois Curfman McInnes            row) or PETSC_NULL.  You must leave room for the diagonal entry even if it is zero.
317647a75d0bSBarry Smith .  o_nz  - number of nonzero blocks per block row in the off-diagonal portion of local
317779bdfe76SSatish Balay            submatrix (same for all local rows).
317847a75d0bSBarry Smith -  o_nnz - array containing the number of nonzero blocks in the various block rows of the
317992e8d321SLois Curfman McInnes            off-diagonal portion of the local submatrix (possibly different for
318092e8d321SLois Curfman McInnes            each block row) or PETSC_NULL.
318179bdfe76SSatish Balay 
318279bdfe76SSatish Balay    Output Parameter:
318379bdfe76SSatish Balay .  A - the matrix
318479bdfe76SSatish Balay 
3185db81eaa0SLois Curfman McInnes    Options Database Keys:
31868c07d4e3SBarry Smith +   -mat_block_size - size of the blocks to use
31878c07d4e3SBarry Smith -   -mat_use_hash_table <fact>
31883ffaccefSLois Curfman McInnes 
3189175b88e8SBarry Smith    It is recommended that one use the MatCreate(), MatSetType() and/or MatSetFromOptions(),
3190ae1d86c5SBarry Smith    MatXXXXSetPreallocation() paradgm instead of this routine directly.
3191175b88e8SBarry Smith    [MatXXXXSetPreallocation() is, for example, MatSeqAIJSetPreallocation]
3192175b88e8SBarry Smith 
3193b259b22eSLois Curfman McInnes    Notes:
319449a6f317SBarry Smith    If the *_nnz parameter is given then the *_nz parameter is ignored
319549a6f317SBarry Smith 
319647a75d0bSBarry Smith    A nonzero block is any block that as 1 or more nonzeros in it
319747a75d0bSBarry Smith 
319879bdfe76SSatish Balay    The user MUST specify either the local or global matrix dimensions
319979bdfe76SSatish Balay    (possibly both).
320079bdfe76SSatish Balay 
3201be79a94dSBarry Smith    If PETSC_DECIDE or  PETSC_DETERMINE is used for a particular argument on one processor
3202be79a94dSBarry Smith    than it must be used on all processors that share the object for that argument.
3203be79a94dSBarry Smith 
320479bdfe76SSatish Balay    Storage Information:
320579bdfe76SSatish Balay    For a square global matrix we define each processor's diagonal portion
320679bdfe76SSatish Balay    to be its local rows and the corresponding columns (a square submatrix);
320779bdfe76SSatish Balay    each processor's off-diagonal portion encompasses the remainder of the
320879bdfe76SSatish Balay    local matrix (a rectangular submatrix).
320979bdfe76SSatish Balay 
321079bdfe76SSatish Balay    The user can specify preallocated storage for the diagonal part of
321179bdfe76SSatish Balay    the local submatrix with either d_nz or d_nnz (not both).  Set
321279bdfe76SSatish Balay    d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic
321379bdfe76SSatish Balay    memory allocation.  Likewise, specify preallocated storage for the
321479bdfe76SSatish Balay    off-diagonal part of the local submatrix with o_nz or o_nnz (not both).
321579bdfe76SSatish Balay 
321679bdfe76SSatish Balay    Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
321779bdfe76SSatish Balay    the figure below we depict these three local rows and all columns (0-11).
321879bdfe76SSatish Balay 
3219db81eaa0SLois Curfman McInnes .vb
3220db81eaa0SLois Curfman McInnes            0 1 2 3 4 5 6 7 8 9 10 11
3221db81eaa0SLois Curfman McInnes           -------------------
3222db81eaa0SLois Curfman McInnes    row 3  |  o o o d d d o o o o o o
3223db81eaa0SLois Curfman McInnes    row 4  |  o o o d d d o o o o o o
3224db81eaa0SLois Curfman McInnes    row 5  |  o o o d d d o o o o o o
3225db81eaa0SLois Curfman McInnes           -------------------
3226db81eaa0SLois Curfman McInnes .ve
322779bdfe76SSatish Balay 
322879bdfe76SSatish Balay    Thus, any entries in the d locations are stored in the d (diagonal)
322979bdfe76SSatish Balay    submatrix, and any entries in the o locations are stored in the
323079bdfe76SSatish Balay    o (off-diagonal) submatrix.  Note that the d and the o submatrices are
323157b952d6SSatish Balay    stored simply in the MATSEQBAIJ format for compressed row storage.
323279bdfe76SSatish Balay 
3233d64ed03dSBarry Smith    Now d_nz should indicate the number of block nonzeros per row in the d matrix,
3234d64ed03dSBarry Smith    and o_nz should indicate the number of block nonzeros per row in the o matrix.
323579bdfe76SSatish Balay    In general, for PDE problems in which most nonzeros are near the diagonal,
323692e8d321SLois Curfman McInnes    one expects d_nz >> o_nz.   For large problems you MUST preallocate memory
323792e8d321SLois Curfman McInnes    or you will get TERRIBLE performance; see the users' manual chapter on
32386da5968aSLois Curfman McInnes    matrices.
323979bdfe76SSatish Balay 
3240027ccd11SLois Curfman McInnes    Level: intermediate
3241027ccd11SLois Curfman McInnes 
324292e8d321SLois Curfman McInnes .keywords: matrix, block, aij, compressed row, sparse, parallel
324379bdfe76SSatish Balay 
3244aac34f13SBarry Smith .seealso: MatCreate(), MatCreateSeqBAIJ(), MatSetValues(), MatCreateMPIBAIJ(), MatMPIBAIJSetPreallocation(), MatMPIBAIJSetPreallocationCSR()
324579bdfe76SSatish Balay @*/
3246be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreateMPIBAIJ(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[],Mat *A)
324779bdfe76SSatish Balay {
32486849ba73SBarry Smith   PetscErrorCode ierr;
3249b24ad042SBarry Smith   PetscMPIInt    size;
325079bdfe76SSatish Balay 
3251d64ed03dSBarry Smith   PetscFunctionBegin;
3252f69a0ea3SMatthew Knepley   ierr = MatCreate(comm,A);CHKERRQ(ierr);
3253f69a0ea3SMatthew Knepley   ierr = MatSetSizes(*A,m,n,M,N);CHKERRQ(ierr);
3254d132466eSBarry Smith   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
3255273d9f13SBarry Smith   if (size > 1) {
3256273d9f13SBarry Smith     ierr = MatSetType(*A,MATMPIBAIJ);CHKERRQ(ierr);
3257273d9f13SBarry Smith     ierr = MatMPIBAIJSetPreallocation(*A,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr);
3258273d9f13SBarry Smith   } else {
3259273d9f13SBarry Smith     ierr = MatSetType(*A,MATSEQBAIJ);CHKERRQ(ierr);
3260273d9f13SBarry Smith     ierr = MatSeqBAIJSetPreallocation(*A,bs,d_nz,d_nnz);CHKERRQ(ierr);
32613914022bSBarry Smith   }
32623a40ed3dSBarry Smith   PetscFunctionReturn(0);
326379bdfe76SSatish Balay }
3264026e39d0SSatish Balay 
32654a2ae208SSatish Balay #undef __FUNCT__
32664a2ae208SSatish Balay #define __FUNCT__ "MatDuplicate_MPIBAIJ"
32676849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIBAIJ(Mat matin,MatDuplicateOption cpvalues,Mat *newmat)
32680ac07820SSatish Balay {
32690ac07820SSatish Balay   Mat            mat;
32700ac07820SSatish Balay   Mat_MPIBAIJ    *a,*oldmat = (Mat_MPIBAIJ*)matin->data;
3271dfbe8321SBarry Smith   PetscErrorCode ierr;
3272b24ad042SBarry Smith   PetscInt       len=0;
32730ac07820SSatish Balay 
3274d64ed03dSBarry Smith   PetscFunctionBegin;
32750ac07820SSatish Balay   *newmat       = 0;
32767adad957SLisandro Dalcin   ierr = MatCreate(((PetscObject)matin)->comm,&mat);CHKERRQ(ierr);
3277d0f46423SBarry Smith   ierr = MatSetSizes(mat,matin->rmap->n,matin->cmap->n,matin->rmap->N,matin->cmap->N);CHKERRQ(ierr);
32787adad957SLisandro Dalcin   ierr = MatSetType(mat,((PetscObject)matin)->type_name);CHKERRQ(ierr);
32791d5dac46SHong Zhang   ierr = PetscMemcpy(mat->ops,matin->ops,sizeof(struct _MatOps));CHKERRQ(ierr);
32807fff6886SHong Zhang 
3281d5f3da31SBarry Smith   mat->factortype   = matin->factortype;
3282273d9f13SBarry Smith   mat->preallocated = PETSC_TRUE;
32830ac07820SSatish Balay   mat->assembled    = PETSC_TRUE;
32847fff6886SHong Zhang   mat->insertmode   = NOT_SET_VALUES;
32857fff6886SHong Zhang 
3286273d9f13SBarry Smith   a      = (Mat_MPIBAIJ*)mat->data;
3287d0f46423SBarry Smith   mat->rmap->bs  = matin->rmap->bs;
32880ac07820SSatish Balay   a->bs2   = oldmat->bs2;
32890ac07820SSatish Balay   a->mbs   = oldmat->mbs;
32900ac07820SSatish Balay   a->nbs   = oldmat->nbs;
32910ac07820SSatish Balay   a->Mbs   = oldmat->Mbs;
32920ac07820SSatish Balay   a->Nbs   = oldmat->Nbs;
32930ac07820SSatish Balay 
329426283091SBarry Smith   ierr = PetscLayoutCopy(matin->rmap,&mat->rmap);CHKERRQ(ierr);
329526283091SBarry Smith   ierr = PetscLayoutCopy(matin->cmap,&mat->cmap);CHKERRQ(ierr);
3296899cda47SBarry Smith 
32970ac07820SSatish Balay   a->size         = oldmat->size;
32980ac07820SSatish Balay   a->rank         = oldmat->rank;
3299aef5e8e0SSatish Balay   a->donotstash   = oldmat->donotstash;
3300aef5e8e0SSatish Balay   a->roworiented  = oldmat->roworiented;
3301aef5e8e0SSatish Balay   a->rowindices   = 0;
33020ac07820SSatish Balay   a->rowvalues    = 0;
33030ac07820SSatish Balay   a->getrowactive = PETSC_FALSE;
330430793edcSSatish Balay   a->barray       = 0;
3305899cda47SBarry Smith   a->rstartbs     = oldmat->rstartbs;
3306899cda47SBarry Smith   a->rendbs       = oldmat->rendbs;
3307899cda47SBarry Smith   a->cstartbs     = oldmat->cstartbs;
3308899cda47SBarry Smith   a->cendbs       = oldmat->cendbs;
33090ac07820SSatish Balay 
3310133cdb44SSatish Balay   /* hash table stuff */
3311133cdb44SSatish Balay   a->ht           = 0;
3312133cdb44SSatish Balay   a->hd           = 0;
3313133cdb44SSatish Balay   a->ht_size      = 0;
3314133cdb44SSatish Balay   a->ht_flag      = oldmat->ht_flag;
331525fdafccSSatish Balay   a->ht_fact      = oldmat->ht_fact;
3316133cdb44SSatish Balay   a->ht_total_ct  = 0;
3317133cdb44SSatish Balay   a->ht_insert_ct = 0;
3318133cdb44SSatish Balay 
3319899cda47SBarry Smith   ierr = PetscMemcpy(a->rangebs,oldmat->rangebs,(a->size+1)*sizeof(PetscInt));CHKERRQ(ierr);
33200ac07820SSatish Balay   if (oldmat->colmap) {
3321aa482453SBarry Smith #if defined (PETSC_USE_CTABLE)
33220f5bd95cSBarry Smith   ierr = PetscTableCreateCopy(oldmat->colmap,&a->colmap);CHKERRQ(ierr);
332348e59246SSatish Balay #else
3324b24ad042SBarry Smith   ierr = PetscMalloc((a->Nbs)*sizeof(PetscInt),&a->colmap);CHKERRQ(ierr);
332552e6d16bSBarry Smith   ierr = PetscLogObjectMemory(mat,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr);
3326b24ad042SBarry Smith   ierr = PetscMemcpy(a->colmap,oldmat->colmap,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr);
332748e59246SSatish Balay #endif
33280ac07820SSatish Balay   } else a->colmap = 0;
33294beb1cfeSHong Zhang 
33300ac07820SSatish Balay   if (oldmat->garray && (len = ((Mat_SeqBAIJ*)(oldmat->B->data))->nbs)) {
3331b24ad042SBarry Smith     ierr = PetscMalloc(len*sizeof(PetscInt),&a->garray);CHKERRQ(ierr);
333252e6d16bSBarry Smith     ierr = PetscLogObjectMemory(mat,len*sizeof(PetscInt));CHKERRQ(ierr);
3333b24ad042SBarry Smith     ierr = PetscMemcpy(a->garray,oldmat->garray,len*sizeof(PetscInt));CHKERRQ(ierr);
33340ac07820SSatish Balay   } else a->garray = 0;
33350ac07820SSatish Balay 
3336533163c2SBarry Smith   ierr = MatStashCreate_Private(((PetscObject)matin)->comm,matin->rmap->bs,&mat->bstash);CHKERRQ(ierr);
33370ac07820SSatish Balay   ierr = VecDuplicate(oldmat->lvec,&a->lvec);CHKERRQ(ierr);
333852e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->lvec);CHKERRQ(ierr);
33390ac07820SSatish Balay   ierr = VecScatterCopy(oldmat->Mvctx,&a->Mvctx);CHKERRQ(ierr);
334052e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->Mvctx);CHKERRQ(ierr);
33417fff6886SHong Zhang 
33422e8a6d31SBarry Smith   ierr = MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr);
334352e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->A);CHKERRQ(ierr);
33442e8a6d31SBarry Smith   ierr = MatDuplicate(oldmat->B,cpvalues,&a->B);CHKERRQ(ierr);
334552e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->B);CHKERRQ(ierr);
33467adad957SLisandro Dalcin   ierr = PetscFListDuplicate(((PetscObject)matin)->qlist,&((PetscObject)mat)->qlist);CHKERRQ(ierr);
33470ac07820SSatish Balay   *newmat = mat;
33484beb1cfeSHong Zhang 
33493a40ed3dSBarry Smith   PetscFunctionReturn(0);
33500ac07820SSatish Balay }
335157b952d6SSatish Balay 
33524a2ae208SSatish Balay #undef __FUNCT__
33534a2ae208SSatish Balay #define __FUNCT__ "MatLoad_MPIBAIJ"
3354a313700dSBarry Smith PetscErrorCode MatLoad_MPIBAIJ(PetscViewer viewer, const MatType type,Mat *newmat)
335557b952d6SSatish Balay {
335657b952d6SSatish Balay   Mat            A;
33576849ba73SBarry Smith   PetscErrorCode ierr;
3358b24ad042SBarry Smith   int            fd;
3359b24ad042SBarry Smith   PetscInt       i,nz,j,rstart,rend;
336087828ca2SBarry Smith   PetscScalar    *vals,*buf;
336157b952d6SSatish Balay   MPI_Comm       comm = ((PetscObject)viewer)->comm;
336257b952d6SSatish Balay   MPI_Status     status;
3363b24ad042SBarry Smith   PetscMPIInt    rank,size,maxnz;
3364b24ad042SBarry Smith   PetscInt       header[4],*rowlengths = 0,M,N,m,*rowners,*cols;
3365910ba992SMatthew Knepley   PetscInt       *locrowlens = PETSC_NULL,*procsnz = PETSC_NULL,*browners = PETSC_NULL;
3366167e7480SBarry Smith   PetscInt       jj,*mycols,*ibuf,bs=1,Mbs,mbs,extra_rows,mmax;
3367dc231df0SBarry Smith   PetscMPIInt    tag = ((PetscObject)viewer)->tag;
3368910ba992SMatthew Knepley   PetscInt       *dlens = PETSC_NULL,*odlens = PETSC_NULL,*mask = PETSC_NULL,*masked1 = PETSC_NULL,*masked2 = PETSC_NULL,rowcount,odcount;
3369dc231df0SBarry Smith   PetscInt       dcount,kmax,k,nzcount,tmp,mend;
337057b952d6SSatish Balay 
3371d64ed03dSBarry Smith   PetscFunctionBegin;
337277925062SSatish Balay   ierr = PetscOptionsBegin(comm,PETSC_NULL,"Options for loading MPIBAIJ matrix 2","Mat");CHKERRQ(ierr);
33738c07d4e3SBarry Smith     ierr = PetscOptionsInt("-matload_block_size","Set the blocksize used to store the matrix","MatLoad",bs,&bs,PETSC_NULL);CHKERRQ(ierr);
33748c07d4e3SBarry Smith   ierr = PetscOptionsEnd();CHKERRQ(ierr);
337557b952d6SSatish Balay 
3376d132466eSBarry Smith   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
3377d132466eSBarry Smith   ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr);
337857b952d6SSatish Balay   if (!rank) {
3379b0a32e0cSBarry Smith     ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr);
3380e5638eb3SBarry Smith     ierr = PetscBinaryRead(fd,(char *)header,4,PETSC_INT);CHKERRQ(ierr);
3381e32f2f54SBarry Smith     if (header[0] != MAT_FILE_CLASSID) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"not matrix object");
33826c5fab8fSBarry Smith   }
3383d64ed03dSBarry Smith 
3384b24ad042SBarry Smith   ierr = MPI_Bcast(header+1,3,MPIU_INT,0,comm);CHKERRQ(ierr);
338557b952d6SSatish Balay   M = header[1]; N = header[2];
338657b952d6SSatish Balay 
3387e7e72b3dSBarry Smith   if (M != N) SETERRQ(((PetscObject)viewer)->comm,PETSC_ERR_SUP,"Can only do square matrices");
338857b952d6SSatish Balay 
338957b952d6SSatish Balay   /*
339057b952d6SSatish Balay      This code adds extra rows to make sure the number of rows is
339157b952d6SSatish Balay      divisible by the blocksize
339257b952d6SSatish Balay   */
339357b952d6SSatish Balay   Mbs        = M/bs;
3394dc231df0SBarry Smith   extra_rows = bs - M + bs*Mbs;
339557b952d6SSatish Balay   if (extra_rows == bs) extra_rows = 0;
339657b952d6SSatish Balay   else                  Mbs++;
339757b952d6SSatish Balay   if (extra_rows && !rank) {
33981e2582c4SBarry Smith     ierr = PetscInfo(viewer,"Padding loaded matrix to match blocksize\n");CHKERRQ(ierr);
339957b952d6SSatish Balay   }
3400537820f0SBarry Smith 
340157b952d6SSatish Balay   /* determine ownership of all rows */
340257b952d6SSatish Balay   mbs        = Mbs/size + ((Mbs % size) > rank);
340357b952d6SSatish Balay   m          = mbs*bs;
3404dc231df0SBarry Smith   ierr       = PetscMalloc2(size+1,PetscInt,&rowners,size+1,PetscInt,&browners);CHKERRQ(ierr);
3405b24ad042SBarry Smith   ierr       = MPI_Allgather(&mbs,1,MPIU_INT,rowners+1,1,MPIU_INT,comm);CHKERRQ(ierr);
3406167e7480SBarry Smith 
3407167e7480SBarry Smith   /* process 0 needs enough room for process with most rows */
3408167e7480SBarry Smith   if (!rank) {
3409167e7480SBarry Smith     mmax = rowners[1];
3410167e7480SBarry Smith     for (i=2; i<size; i++) {
3411167e7480SBarry Smith       mmax = PetscMax(mmax,rowners[i]);
3412167e7480SBarry Smith     }
3413ca02efcfSSatish Balay     mmax*=bs;
3414167e7480SBarry Smith   } else mmax = m;
3415167e7480SBarry Smith 
341657b952d6SSatish Balay   rowners[0] = 0;
3417cee3aa6bSSatish Balay   for (i=2; i<=size; i++)  rowners[i] += rowners[i-1];
3418cee3aa6bSSatish Balay   for (i=0; i<=size;  i++) browners[i] = rowners[i]*bs;
341957b952d6SSatish Balay   rstart = rowners[rank];
342057b952d6SSatish Balay   rend   = rowners[rank+1];
342157b952d6SSatish Balay 
342257b952d6SSatish Balay   /* distribute row lengths to all processors */
342319c38ff2SBarry Smith   ierr = PetscMalloc((mmax+1)*sizeof(PetscInt),&locrowlens);CHKERRQ(ierr);
342457b952d6SSatish Balay   if (!rank) {
3425dc231df0SBarry Smith     mend = m;
3426dc231df0SBarry Smith     if (size == 1) mend = mend - extra_rows;
3427dc231df0SBarry Smith     ierr = PetscBinaryRead(fd,locrowlens,mend,PETSC_INT);CHKERRQ(ierr);
3428dc231df0SBarry Smith     for (j=mend; j<m; j++) locrowlens[j] = 1;
3429dc231df0SBarry Smith     ierr = PetscMalloc(m*sizeof(PetscInt),&rowlengths);CHKERRQ(ierr);
3430b24ad042SBarry Smith     ierr = PetscMalloc(size*sizeof(PetscInt),&procsnz);CHKERRQ(ierr);
3431b24ad042SBarry Smith     ierr = PetscMemzero(procsnz,size*sizeof(PetscInt));CHKERRQ(ierr);
3432dc231df0SBarry Smith     for (j=0; j<m; j++) {
3433dc231df0SBarry Smith       procsnz[0] += locrowlens[j];
3434dc231df0SBarry Smith     }
3435dc231df0SBarry Smith     for (i=1; i<size; i++) {
3436dc231df0SBarry Smith       mend = browners[i+1] - browners[i];
3437dc231df0SBarry Smith       if (i == size-1) mend = mend - extra_rows;
3438dc231df0SBarry Smith       ierr = PetscBinaryRead(fd,rowlengths,mend,PETSC_INT);CHKERRQ(ierr);
3439dc231df0SBarry Smith       for (j=mend; j<browners[i+1] - browners[i]; j++) rowlengths[j] = 1;
3440dc231df0SBarry Smith       /* calculate the number of nonzeros on each processor */
3441dc231df0SBarry Smith       for (j=0; j<browners[i+1]-browners[i]; j++) {
344257b952d6SSatish Balay         procsnz[i] += rowlengths[j];
344357b952d6SSatish Balay       }
3444dc231df0SBarry Smith       ierr = MPI_Send(rowlengths,browners[i+1]-browners[i],MPIU_INT,i,tag,comm);CHKERRQ(ierr);
344557b952d6SSatish Balay     }
3446606d414cSSatish Balay     ierr = PetscFree(rowlengths);CHKERRQ(ierr);
3447dc231df0SBarry Smith   } else {
3448dc231df0SBarry Smith     ierr = MPI_Recv(locrowlens,m,MPIU_INT,0,tag,comm,&status);CHKERRQ(ierr);
3449dc231df0SBarry Smith   }
345057b952d6SSatish Balay 
3451dc231df0SBarry Smith   if (!rank) {
345257b952d6SSatish Balay     /* determine max buffer needed and allocate it */
34538a8e0b3aSBarry Smith     maxnz = procsnz[0];
3454cdc0ba36SBarry Smith     for (i=1; i<size; i++) {
345557b952d6SSatish Balay       maxnz = PetscMax(maxnz,procsnz[i]);
345657b952d6SSatish Balay     }
3457b24ad042SBarry Smith     ierr = PetscMalloc(maxnz*sizeof(PetscInt),&cols);CHKERRQ(ierr);
345857b952d6SSatish Balay 
345957b952d6SSatish Balay     /* read in my part of the matrix column indices  */
346057b952d6SSatish Balay     nz     = procsnz[0];
346119c38ff2SBarry Smith     ierr   = PetscMalloc((nz+1)*sizeof(PetscInt),&ibuf);CHKERRQ(ierr);
346257b952d6SSatish Balay     mycols = ibuf;
3463cee3aa6bSSatish Balay     if (size == 1)  nz -= extra_rows;
3464e5638eb3SBarry Smith     ierr = PetscBinaryRead(fd,mycols,nz,PETSC_INT);CHKERRQ(ierr);
3465cee3aa6bSSatish Balay     if (size == 1)  for (i=0; i< extra_rows; i++) { mycols[nz+i] = M+i; }
3466cee3aa6bSSatish Balay 
346757b952d6SSatish Balay     /* read in every ones (except the last) and ship off */
346857b952d6SSatish Balay     for (i=1; i<size-1; i++) {
346957b952d6SSatish Balay       nz   = procsnz[i];
3470e5638eb3SBarry Smith       ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr);
3471b24ad042SBarry Smith       ierr = MPI_Send(cols,nz,MPIU_INT,i,tag,comm);CHKERRQ(ierr);
347257b952d6SSatish Balay     }
347357b952d6SSatish Balay     /* read in the stuff for the last proc */
347457b952d6SSatish Balay     if (size != 1) {
347557b952d6SSatish Balay       nz   = procsnz[size-1] - extra_rows;  /* the extra rows are not on the disk */
3476e5638eb3SBarry Smith       ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr);
347757b952d6SSatish Balay       for (i=0; i<extra_rows; i++) cols[nz+i] = M+i;
3478b24ad042SBarry Smith       ierr = MPI_Send(cols,nz+extra_rows,MPIU_INT,size-1,tag,comm);CHKERRQ(ierr);
347957b952d6SSatish Balay     }
3480606d414cSSatish Balay     ierr = PetscFree(cols);CHKERRQ(ierr);
3481d64ed03dSBarry Smith   } else {
348257b952d6SSatish Balay     /* determine buffer space needed for message */
348357b952d6SSatish Balay     nz = 0;
348457b952d6SSatish Balay     for (i=0; i<m; i++) {
348557b952d6SSatish Balay       nz += locrowlens[i];
348657b952d6SSatish Balay     }
348719c38ff2SBarry Smith     ierr   = PetscMalloc((nz+1)*sizeof(PetscInt),&ibuf);CHKERRQ(ierr);
348857b952d6SSatish Balay     mycols = ibuf;
348957b952d6SSatish Balay     /* receive message of column indices*/
3490b24ad042SBarry Smith     ierr = MPI_Recv(mycols,nz,MPIU_INT,0,tag,comm,&status);CHKERRQ(ierr);
3491b24ad042SBarry Smith     ierr = MPI_Get_count(&status,MPIU_INT,&maxnz);CHKERRQ(ierr);
3492e32f2f54SBarry Smith     if (maxnz != nz) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file");
349357b952d6SSatish Balay   }
349457b952d6SSatish Balay 
349557b952d6SSatish Balay   /* loop over local rows, determining number of off diagonal entries */
3496dc231df0SBarry Smith   ierr     = PetscMalloc2(rend-rstart,PetscInt,&dlens,rend-rstart,PetscInt,&odlens);CHKERRQ(ierr);
3497dc231df0SBarry Smith   ierr     = PetscMalloc3(Mbs,PetscInt,&mask,Mbs,PetscInt,&masked1,Mbs,PetscInt,&masked2);CHKERRQ(ierr);
3498dc231df0SBarry Smith   ierr     = PetscMemzero(mask,Mbs*sizeof(PetscInt));CHKERRQ(ierr);
3499dc231df0SBarry Smith   ierr     = PetscMemzero(masked1,Mbs*sizeof(PetscInt));CHKERRQ(ierr);
3500dc231df0SBarry Smith   ierr     = PetscMemzero(masked2,Mbs*sizeof(PetscInt));CHKERRQ(ierr);
350157b952d6SSatish Balay   rowcount = 0; nzcount = 0;
350257b952d6SSatish Balay   for (i=0; i<mbs; i++) {
350357b952d6SSatish Balay     dcount  = 0;
350457b952d6SSatish Balay     odcount = 0;
350557b952d6SSatish Balay     for (j=0; j<bs; j++) {
350657b952d6SSatish Balay       kmax = locrowlens[rowcount];
350757b952d6SSatish Balay       for (k=0; k<kmax; k++) {
350857b952d6SSatish Balay         tmp = mycols[nzcount++]/bs;
350957b952d6SSatish Balay         if (!mask[tmp]) {
351057b952d6SSatish Balay           mask[tmp] = 1;
351157b952d6SSatish Balay           if (tmp < rstart || tmp >= rend) masked2[odcount++] = tmp;
351257b952d6SSatish Balay           else masked1[dcount++] = tmp;
351357b952d6SSatish Balay         }
351457b952d6SSatish Balay       }
351557b952d6SSatish Balay       rowcount++;
351657b952d6SSatish Balay     }
3517cee3aa6bSSatish Balay 
351857b952d6SSatish Balay     dlens[i]  = dcount;
351957b952d6SSatish Balay     odlens[i] = odcount;
3520cee3aa6bSSatish Balay 
352157b952d6SSatish Balay     /* zero out the mask elements we set */
352257b952d6SSatish Balay     for (j=0; j<dcount; j++) mask[masked1[j]] = 0;
352357b952d6SSatish Balay     for (j=0; j<odcount; j++) mask[masked2[j]] = 0;
352457b952d6SSatish Balay   }
3525cee3aa6bSSatish Balay 
352657b952d6SSatish Balay   /* create our matrix */
3527f69a0ea3SMatthew Knepley   ierr = MatCreate(comm,&A);CHKERRQ(ierr);
3528f69a0ea3SMatthew Knepley   ierr = MatSetSizes(A,m,m,M+extra_rows,N+extra_rows);CHKERRQ(ierr);
3529cb9801acSJed Brown   ierr = MatSetType(A,type);CHKERRQ(ierr);
353078ae41b4SKris Buschelman   ierr = MatMPIBAIJSetPreallocation(A,bs,0,dlens,0,odlens);CHKERRQ(ierr);
353178ae41b4SKris Buschelman 
353257b952d6SSatish Balay   if (!rank) {
353319c38ff2SBarry Smith     ierr = PetscMalloc((maxnz+1)*sizeof(PetscScalar),&buf);CHKERRQ(ierr);
353457b952d6SSatish Balay     /* read in my part of the matrix numerical values  */
353557b952d6SSatish Balay     nz = procsnz[0];
353657b952d6SSatish Balay     vals = buf;
3537cee3aa6bSSatish Balay     mycols = ibuf;
3538cee3aa6bSSatish Balay     if (size == 1)  nz -= extra_rows;
3539e5638eb3SBarry Smith     ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
3540cee3aa6bSSatish Balay     if (size == 1)  for (i=0; i< extra_rows; i++) { vals[nz+i] = 1.0; }
3541537820f0SBarry Smith 
354257b952d6SSatish Balay     /* insert into matrix */
354357b952d6SSatish Balay     jj      = rstart*bs;
354457b952d6SSatish Balay     for (i=0; i<m; i++) {
3545dc231df0SBarry Smith       ierr = MatSetValues_MPIBAIJ(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr);
354657b952d6SSatish Balay       mycols += locrowlens[i];
354757b952d6SSatish Balay       vals   += locrowlens[i];
354857b952d6SSatish Balay       jj++;
354957b952d6SSatish Balay     }
355057b952d6SSatish Balay     /* read in other processors (except the last one) and ship out */
355157b952d6SSatish Balay     for (i=1; i<size-1; i++) {
355257b952d6SSatish Balay       nz   = procsnz[i];
355357b952d6SSatish Balay       vals = buf;
3554e5638eb3SBarry Smith       ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
35557adad957SLisandro Dalcin       ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,((PetscObject)A)->tag,comm);CHKERRQ(ierr);
355657b952d6SSatish Balay     }
355757b952d6SSatish Balay     /* the last proc */
355857b952d6SSatish Balay     if (size != 1){
355957b952d6SSatish Balay       nz   = procsnz[i] - extra_rows;
3560cee3aa6bSSatish Balay       vals = buf;
3561e5638eb3SBarry Smith       ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
356257b952d6SSatish Balay       for (i=0; i<extra_rows; i++) vals[nz+i] = 1.0;
35637adad957SLisandro Dalcin       ierr = MPI_Send(vals,nz+extra_rows,MPIU_SCALAR,size-1,((PetscObject)A)->tag,comm);CHKERRQ(ierr);
356457b952d6SSatish Balay     }
3565606d414cSSatish Balay     ierr = PetscFree(procsnz);CHKERRQ(ierr);
3566d64ed03dSBarry Smith   } else {
356757b952d6SSatish Balay     /* receive numeric values */
356819c38ff2SBarry Smith     ierr = PetscMalloc((nz+1)*sizeof(PetscScalar),&buf);CHKERRQ(ierr);
356957b952d6SSatish Balay 
357057b952d6SSatish Balay     /* receive message of values*/
357157b952d6SSatish Balay     vals   = buf;
3572cee3aa6bSSatish Balay     mycols = ibuf;
35737adad957SLisandro Dalcin     ierr   = MPI_Recv(vals,nz,MPIU_SCALAR,0,((PetscObject)A)->tag,comm,&status);CHKERRQ(ierr);
3574ca161407SBarry Smith     ierr   = MPI_Get_count(&status,MPIU_SCALAR,&maxnz);CHKERRQ(ierr);
3575e32f2f54SBarry Smith     if (maxnz != nz) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file");
357657b952d6SSatish Balay 
357757b952d6SSatish Balay     /* insert into matrix */
357857b952d6SSatish Balay     jj      = rstart*bs;
3579cee3aa6bSSatish Balay     for (i=0; i<m; i++) {
3580dc231df0SBarry Smith       ierr    = MatSetValues_MPIBAIJ(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr);
358157b952d6SSatish Balay       mycols += locrowlens[i];
358257b952d6SSatish Balay       vals   += locrowlens[i];
358357b952d6SSatish Balay       jj++;
358457b952d6SSatish Balay     }
358557b952d6SSatish Balay   }
3586606d414cSSatish Balay   ierr = PetscFree(locrowlens);CHKERRQ(ierr);
3587606d414cSSatish Balay   ierr = PetscFree(buf);CHKERRQ(ierr);
3588606d414cSSatish Balay   ierr = PetscFree(ibuf);CHKERRQ(ierr);
3589dc231df0SBarry Smith   ierr = PetscFree2(rowners,browners);CHKERRQ(ierr);
3590dc231df0SBarry Smith   ierr = PetscFree2(dlens,odlens);CHKERRQ(ierr);
3591dc231df0SBarry Smith   ierr = PetscFree3(mask,masked1,masked2);CHKERRQ(ierr);
35926d4a8577SBarry Smith   ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
35936d4a8577SBarry Smith   ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
359478ae41b4SKris Buschelman 
359578ae41b4SKris Buschelman   *newmat = A;
35963a40ed3dSBarry Smith   PetscFunctionReturn(0);
359757b952d6SSatish Balay }
359857b952d6SSatish Balay 
35994a2ae208SSatish Balay #undef __FUNCT__
36004a2ae208SSatish Balay #define __FUNCT__ "MatMPIBAIJSetHashTableFactor"
3601133cdb44SSatish Balay /*@
3602133cdb44SSatish Balay    MatMPIBAIJSetHashTableFactor - Sets the factor required to compute the size of the HashTable.
3603133cdb44SSatish Balay 
3604133cdb44SSatish Balay    Input Parameters:
3605133cdb44SSatish Balay .  mat  - the matrix
3606133cdb44SSatish Balay .  fact - factor
3607133cdb44SSatish Balay 
3608fee21e36SBarry Smith    Collective on Mat
3609fee21e36SBarry Smith 
36108c890885SBarry Smith    Level: advanced
36118c890885SBarry Smith 
3612133cdb44SSatish Balay   Notes:
36138c07d4e3SBarry Smith    This can also be set by the command line option: -mat_use_hash_table <fact>
3614133cdb44SSatish Balay 
3615133cdb44SSatish Balay .keywords: matrix, hashtable, factor, HT
3616133cdb44SSatish Balay 
3617133cdb44SSatish Balay .seealso: MatSetOption()
3618133cdb44SSatish Balay @*/
3619be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPIBAIJSetHashTableFactor(Mat mat,PetscReal fact)
3620133cdb44SSatish Balay {
3621dfbe8321SBarry Smith   PetscErrorCode ierr,(*f)(Mat,PetscReal);
36225bf65638SKris Buschelman 
36235bf65638SKris Buschelman   PetscFunctionBegin;
36245bf65638SKris Buschelman   ierr = PetscObjectQueryFunction((PetscObject)mat,"MatSetHashTableFactor_C",(void (**)(void))&f);CHKERRQ(ierr);
36255bf65638SKris Buschelman   if (f) {
36265bf65638SKris Buschelman     ierr = (*f)(mat,fact);CHKERRQ(ierr);
36275bf65638SKris Buschelman   }
36285bf65638SKris Buschelman   PetscFunctionReturn(0);
36295bf65638SKris Buschelman }
36305bf65638SKris Buschelman 
3631be1d678aSKris Buschelman EXTERN_C_BEGIN
36325bf65638SKris Buschelman #undef __FUNCT__
36335bf65638SKris Buschelman #define __FUNCT__ "MatSetHashTableFactor_MPIBAIJ"
3634be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatSetHashTableFactor_MPIBAIJ(Mat mat,PetscReal fact)
36355bf65638SKris Buschelman {
363625fdafccSSatish Balay   Mat_MPIBAIJ *baij;
3637133cdb44SSatish Balay 
3638133cdb44SSatish Balay   PetscFunctionBegin;
3639133cdb44SSatish Balay   baij = (Mat_MPIBAIJ*)mat->data;
3640133cdb44SSatish Balay   baij->ht_fact = fact;
3641133cdb44SSatish Balay   PetscFunctionReturn(0);
3642133cdb44SSatish Balay }
3643be1d678aSKris Buschelman EXTERN_C_END
3644f2a5309cSSatish Balay 
36454a2ae208SSatish Balay #undef __FUNCT__
36464a2ae208SSatish Balay #define __FUNCT__ "MatMPIBAIJGetSeqBAIJ"
3647be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPIBAIJGetSeqBAIJ(Mat A,Mat *Ad,Mat *Ao,PetscInt *colmap[])
3648f2a5309cSSatish Balay {
3649f2a5309cSSatish Balay   Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data;
3650f2a5309cSSatish Balay   PetscFunctionBegin;
3651f2a5309cSSatish Balay   *Ad     = a->A;
3652f2a5309cSSatish Balay   *Ao     = a->B;
3653195d93cdSBarry Smith   *colmap = a->garray;
3654f2a5309cSSatish Balay   PetscFunctionReturn(0);
3655f2a5309cSSatish Balay }
365685535b8eSBarry Smith 
365785535b8eSBarry Smith /*
365885535b8eSBarry Smith     Special version for direct calls from Fortran (to eliminate two function call overheads
365985535b8eSBarry Smith */
366085535b8eSBarry Smith #if defined(PETSC_HAVE_FORTRAN_CAPS)
366185535b8eSBarry Smith #define matmpibaijsetvaluesblocked_ MATMPIBAIJSETVALUESBLOCKED
366285535b8eSBarry Smith #elif !defined(PETSC_HAVE_FORTRAN_UNDERSCORE)
366385535b8eSBarry Smith #define matmpibaijsetvaluesblocked_ matmpibaijsetvaluesblocked
366485535b8eSBarry Smith #endif
366585535b8eSBarry Smith 
366685535b8eSBarry Smith #undef __FUNCT__
366785535b8eSBarry Smith #define __FUNCT__ "matmpibiajsetvaluesblocked"
366885535b8eSBarry Smith /*@C
366985535b8eSBarry Smith   MatMPIBAIJSetValuesBlocked - Direct Fortran call to replace call to MatSetValuesBlocked()
367085535b8eSBarry Smith 
367185535b8eSBarry Smith   Collective on Mat
367285535b8eSBarry Smith 
367385535b8eSBarry Smith   Input Parameters:
367485535b8eSBarry Smith + mat - the matrix
367585535b8eSBarry Smith . min - number of input rows
367685535b8eSBarry Smith . im - input rows
367785535b8eSBarry Smith . nin - number of input columns
367885535b8eSBarry Smith . in - input columns
367985535b8eSBarry Smith . v - numerical values input
368085535b8eSBarry Smith - addvin - INSERT_VALUES or ADD_VALUES
368185535b8eSBarry Smith 
368285535b8eSBarry Smith   Notes: This has a complete copy of MatSetValuesBlocked_MPIBAIJ() which is terrible code un-reuse.
368385535b8eSBarry Smith 
368485535b8eSBarry Smith   Level: advanced
368585535b8eSBarry Smith 
368685535b8eSBarry Smith .seealso:   MatSetValuesBlocked()
368785535b8eSBarry Smith @*/
368885535b8eSBarry Smith PetscErrorCode matmpibaijsetvaluesblocked_(Mat *matin,PetscInt *min,const PetscInt im[],PetscInt *nin,const PetscInt in[],const MatScalar v[],InsertMode *addvin)
368985535b8eSBarry Smith {
369085535b8eSBarry Smith   /* convert input arguments to C version */
369185535b8eSBarry Smith   Mat             mat = *matin;
369285535b8eSBarry Smith   PetscInt        m = *min, n = *nin;
369385535b8eSBarry Smith   InsertMode      addv = *addvin;
369485535b8eSBarry Smith 
369585535b8eSBarry Smith   Mat_MPIBAIJ     *baij = (Mat_MPIBAIJ*)mat->data;
369685535b8eSBarry Smith   const MatScalar *value;
369785535b8eSBarry Smith   MatScalar       *barray=baij->barray;
369885535b8eSBarry Smith   PetscTruth      roworiented = baij->roworiented;
369985535b8eSBarry Smith   PetscErrorCode  ierr;
370085535b8eSBarry Smith   PetscInt        i,j,ii,jj,row,col,rstart=baij->rstartbs;
370185535b8eSBarry Smith   PetscInt        rend=baij->rendbs,cstart=baij->cstartbs,stepval;
3702d0f46423SBarry Smith   PetscInt        cend=baij->cendbs,bs=mat->rmap->bs,bs2=baij->bs2;
370385535b8eSBarry Smith 
370485535b8eSBarry Smith   PetscFunctionBegin;
370585535b8eSBarry Smith   /* tasks normally handled by MatSetValuesBlocked() */
370685535b8eSBarry Smith   if (mat->insertmode == NOT_SET_VALUES) {
370785535b8eSBarry Smith     mat->insertmode = addv;
370885535b8eSBarry Smith   }
370985535b8eSBarry Smith #if defined(PETSC_USE_DEBUG)
3710e7e72b3dSBarry Smith   else if (mat->insertmode != addv) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Cannot mix add values and insert values");
3711e32f2f54SBarry Smith   if (mat->factortype) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Not for factored matrix");
371285535b8eSBarry Smith #endif
371385535b8eSBarry Smith   if (mat->assembled) {
371485535b8eSBarry Smith     mat->was_assembled = PETSC_TRUE;
371585535b8eSBarry Smith     mat->assembled     = PETSC_FALSE;
371685535b8eSBarry Smith   }
371785535b8eSBarry Smith   ierr = PetscLogEventBegin(MAT_SetValues,mat,0,0,0);CHKERRQ(ierr);
371885535b8eSBarry Smith 
371985535b8eSBarry Smith 
372085535b8eSBarry Smith   if(!barray) {
372185535b8eSBarry Smith     ierr         = PetscMalloc(bs2*sizeof(MatScalar),&barray);CHKERRQ(ierr);
372285535b8eSBarry Smith     baij->barray = barray;
372385535b8eSBarry Smith   }
372485535b8eSBarry Smith 
372585535b8eSBarry Smith   if (roworiented) {
372685535b8eSBarry Smith     stepval = (n-1)*bs;
372785535b8eSBarry Smith   } else {
372885535b8eSBarry Smith     stepval = (m-1)*bs;
372985535b8eSBarry Smith   }
373085535b8eSBarry Smith   for (i=0; i<m; i++) {
373185535b8eSBarry Smith     if (im[i] < 0) continue;
373285535b8eSBarry Smith #if defined(PETSC_USE_DEBUG)
3733e32f2f54SBarry Smith     if (im[i] >= baij->Mbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large, row %D max %D",im[i],baij->Mbs-1);
373485535b8eSBarry Smith #endif
373585535b8eSBarry Smith     if (im[i] >= rstart && im[i] < rend) {
373685535b8eSBarry Smith       row = im[i] - rstart;
373785535b8eSBarry Smith       for (j=0; j<n; j++) {
373885535b8eSBarry Smith         /* If NumCol = 1 then a copy is not required */
373985535b8eSBarry Smith         if ((roworiented) && (n == 1)) {
374085535b8eSBarry Smith           barray = (MatScalar*)v + i*bs2;
374185535b8eSBarry Smith         } else if((!roworiented) && (m == 1)) {
374285535b8eSBarry Smith           barray = (MatScalar*)v + j*bs2;
374385535b8eSBarry Smith         } else { /* Here a copy is required */
374485535b8eSBarry Smith           if (roworiented) {
374585535b8eSBarry Smith             value = v + i*(stepval+bs)*bs + j*bs;
374685535b8eSBarry Smith           } else {
374785535b8eSBarry Smith             value = v + j*(stepval+bs)*bs + i*bs;
374885535b8eSBarry Smith           }
374985535b8eSBarry Smith           for (ii=0; ii<bs; ii++,value+=stepval) {
375085535b8eSBarry Smith             for (jj=0; jj<bs; jj++) {
375185535b8eSBarry Smith               *barray++  = *value++;
375285535b8eSBarry Smith             }
375385535b8eSBarry Smith           }
375485535b8eSBarry Smith           barray -=bs2;
375585535b8eSBarry Smith         }
375685535b8eSBarry Smith 
375785535b8eSBarry Smith         if (in[j] >= cstart && in[j] < cend){
375885535b8eSBarry Smith           col  = in[j] - cstart;
375997e5c40aSBarry Smith           ierr = MatSetValuesBlocked_SeqBAIJ(baij->A,1,&row,1,&col,barray,addv);CHKERRQ(ierr);
376085535b8eSBarry Smith         }
376185535b8eSBarry Smith         else if (in[j] < 0) continue;
376285535b8eSBarry Smith #if defined(PETSC_USE_DEBUG)
3763cb9801acSJed Brown         else if (in[j] >= baij->Nbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large, col %D max %D",in[j],baij->Nbs-1);
376485535b8eSBarry Smith #endif
376585535b8eSBarry Smith         else {
376685535b8eSBarry Smith           if (mat->was_assembled) {
376785535b8eSBarry Smith             if (!baij->colmap) {
376885535b8eSBarry Smith               ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
376985535b8eSBarry Smith             }
377085535b8eSBarry Smith 
377185535b8eSBarry Smith #if defined(PETSC_USE_DEBUG)
377285535b8eSBarry Smith #if defined (PETSC_USE_CTABLE)
377385535b8eSBarry Smith             { PetscInt data;
377485535b8eSBarry Smith               ierr = PetscTableFind(baij->colmap,in[j]+1,&data);CHKERRQ(ierr);
3775e32f2f54SBarry Smith               if ((data - 1) % bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap");
377685535b8eSBarry Smith             }
377785535b8eSBarry Smith #else
3778e32f2f54SBarry Smith             if ((baij->colmap[in[j]] - 1) % bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap");
377985535b8eSBarry Smith #endif
378085535b8eSBarry Smith #endif
378185535b8eSBarry Smith #if defined (PETSC_USE_CTABLE)
378285535b8eSBarry Smith 	    ierr = PetscTableFind(baij->colmap,in[j]+1,&col);CHKERRQ(ierr);
378385535b8eSBarry Smith             col  = (col - 1)/bs;
378485535b8eSBarry Smith #else
378585535b8eSBarry Smith             col = (baij->colmap[in[j]] - 1)/bs;
378685535b8eSBarry Smith #endif
378785535b8eSBarry Smith             if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) {
378885535b8eSBarry Smith               ierr = DisAssemble_MPIBAIJ(mat);CHKERRQ(ierr);
378985535b8eSBarry Smith               col =  in[j];
379085535b8eSBarry Smith             }
379185535b8eSBarry Smith           }
379285535b8eSBarry Smith           else col = in[j];
379397e5c40aSBarry Smith           ierr = MatSetValuesBlocked_SeqBAIJ(baij->B,1,&row,1,&col,barray,addv);CHKERRQ(ierr);
379485535b8eSBarry Smith         }
379585535b8eSBarry Smith       }
379685535b8eSBarry Smith     } else {
379785535b8eSBarry Smith       if (!baij->donotstash) {
379885535b8eSBarry Smith         if (roworiented) {
379985535b8eSBarry Smith           ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
380085535b8eSBarry Smith         } else {
380185535b8eSBarry Smith           ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
380285535b8eSBarry Smith         }
380385535b8eSBarry Smith       }
380485535b8eSBarry Smith     }
380585535b8eSBarry Smith   }
380685535b8eSBarry Smith 
380785535b8eSBarry Smith   /* task normally handled by MatSetValuesBlocked() */
380885535b8eSBarry Smith   ierr = PetscLogEventEnd(MAT_SetValues,mat,0,0,0);CHKERRQ(ierr);
380985535b8eSBarry Smith   PetscFunctionReturn(0);
381085535b8eSBarry Smith }
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