1be1d678aSKris Buschelman #define PETSCMAT_DLL 279bdfe76SSatish Balay 37c4f633dSBarry Smith #include "../src/mat/impls/baij/mpi/mpibaij.h" /*I "petscmat.h" I*/ 4f3da1532SBarry Smith #include "petscblaslapack.h" 579bdfe76SSatish Balay 6dfbe8321SBarry Smith EXTERN PetscErrorCode MatSetUpMultiply_MPIBAIJ(Mat); 7dfbe8321SBarry Smith EXTERN PetscErrorCode DisAssemble_MPIBAIJ(Mat); 8b24ad042SBarry Smith EXTERN PetscErrorCode MatIncreaseOverlap_MPIBAIJ(Mat,PetscInt,IS[],PetscInt); 9b24ad042SBarry Smith EXTERN PetscErrorCode MatGetSubMatrices_MPIBAIJ(Mat,PetscInt,const IS[],const IS[],MatReuse,Mat *[]); 10b24ad042SBarry Smith EXTERN PetscErrorCode MatGetValues_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt [],PetscScalar []); 11b24ad042SBarry Smith EXTERN PetscErrorCode MatSetValues_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt [],const PetscScalar [],InsertMode); 12b24ad042SBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode); 13b24ad042SBarry Smith EXTERN PetscErrorCode MatGetRow_SeqBAIJ(Mat,PetscInt,PetscInt*,PetscInt*[],PetscScalar*[]); 14b24ad042SBarry Smith EXTERN PetscErrorCode MatRestoreRow_SeqBAIJ(Mat,PetscInt,PetscInt*,PetscInt*[],PetscScalar*[]); 15f4df32b1SMatthew Knepley EXTERN PetscErrorCode MatZeroRows_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscScalar); 1693fea6afSBarry Smith 174a2ae208SSatish Balay #undef __FUNCT__ 18985db425SBarry Smith #define __FUNCT__ "MatGetRowMaxAbs_MPIBAIJ" 19985db425SBarry Smith PetscErrorCode MatGetRowMaxAbs_MPIBAIJ(Mat A,Vec v,PetscInt idx[]) 207843d17aSBarry Smith { 217843d17aSBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 22dfbe8321SBarry Smith PetscErrorCode ierr; 23985db425SBarry Smith PetscInt i,*idxb = 0; 2487828ca2SBarry Smith PetscScalar *va,*vb; 257843d17aSBarry Smith Vec vtmp; 267843d17aSBarry Smith 277843d17aSBarry Smith PetscFunctionBegin; 28985db425SBarry Smith ierr = MatGetRowMaxAbs(a->A,v,idx);CHKERRQ(ierr); 291ebc52fbSHong Zhang ierr = VecGetArray(v,&va);CHKERRQ(ierr); 30985db425SBarry Smith if (idx) { 31192daf7cSBarry Smith for (i=0; i<A->rmap->n; i++) {if (PetscAbsScalar(va[i])) idx[i] += A->cmap->rstart;} 32985db425SBarry Smith } 337843d17aSBarry Smith 34d0f46423SBarry Smith ierr = VecCreateSeq(PETSC_COMM_SELF,A->rmap->n,&vtmp);CHKERRQ(ierr); 35d0f46423SBarry Smith if (idx) {ierr = PetscMalloc(A->rmap->n*sizeof(PetscInt),&idxb);CHKERRQ(ierr);} 36985db425SBarry Smith ierr = MatGetRowMaxAbs(a->B,vtmp,idxb);CHKERRQ(ierr); 371ebc52fbSHong Zhang ierr = VecGetArray(vtmp,&vb);CHKERRQ(ierr); 387843d17aSBarry Smith 39d0f46423SBarry Smith for (i=0; i<A->rmap->n; i++){ 40d0f46423SBarry Smith if (PetscAbsScalar(va[i]) < PetscAbsScalar(vb[i])) {va[i] = vb[i]; if (idx) idx[i] = A->cmap->bs*a->garray[idxb[i]/A->cmap->bs] + (idxb[i] % A->cmap->bs);} 417843d17aSBarry Smith } 427843d17aSBarry Smith 431ebc52fbSHong Zhang ierr = VecRestoreArray(v,&va);CHKERRQ(ierr); 441ebc52fbSHong Zhang ierr = VecRestoreArray(vtmp,&vb);CHKERRQ(ierr); 45985db425SBarry Smith if (idxb) {ierr = PetscFree(idxb);CHKERRQ(ierr);} 46ac355199SBarry Smith ierr = VecDestroy(vtmp);CHKERRQ(ierr); 477843d17aSBarry Smith PetscFunctionReturn(0); 487843d17aSBarry Smith } 497843d17aSBarry Smith 507fc3c18eSBarry Smith EXTERN_C_BEGIN 514a2ae208SSatish Balay #undef __FUNCT__ 524a2ae208SSatish Balay #define __FUNCT__ "MatStoreValues_MPIBAIJ" 53be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatStoreValues_MPIBAIJ(Mat mat) 547fc3c18eSBarry Smith { 557fc3c18eSBarry Smith Mat_MPIBAIJ *aij = (Mat_MPIBAIJ *)mat->data; 56dfbe8321SBarry Smith PetscErrorCode ierr; 577fc3c18eSBarry Smith 587fc3c18eSBarry Smith PetscFunctionBegin; 597fc3c18eSBarry Smith ierr = MatStoreValues(aij->A);CHKERRQ(ierr); 607fc3c18eSBarry Smith ierr = MatStoreValues(aij->B);CHKERRQ(ierr); 617fc3c18eSBarry Smith PetscFunctionReturn(0); 627fc3c18eSBarry Smith } 637fc3c18eSBarry Smith EXTERN_C_END 647fc3c18eSBarry Smith 657fc3c18eSBarry Smith EXTERN_C_BEGIN 664a2ae208SSatish Balay #undef __FUNCT__ 674a2ae208SSatish Balay #define __FUNCT__ "MatRetrieveValues_MPIBAIJ" 68be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatRetrieveValues_MPIBAIJ(Mat mat) 697fc3c18eSBarry Smith { 707fc3c18eSBarry Smith Mat_MPIBAIJ *aij = (Mat_MPIBAIJ *)mat->data; 71dfbe8321SBarry Smith PetscErrorCode ierr; 727fc3c18eSBarry Smith 737fc3c18eSBarry Smith PetscFunctionBegin; 747fc3c18eSBarry Smith ierr = MatRetrieveValues(aij->A);CHKERRQ(ierr); 757fc3c18eSBarry Smith ierr = MatRetrieveValues(aij->B);CHKERRQ(ierr); 767fc3c18eSBarry Smith PetscFunctionReturn(0); 777fc3c18eSBarry Smith } 787fc3c18eSBarry Smith EXTERN_C_END 797fc3c18eSBarry Smith 80537820f0SBarry Smith /* 81537820f0SBarry Smith Local utility routine that creates a mapping from the global column 8257b952d6SSatish Balay number to the local number in the off-diagonal part of the local 83e06f6af7SJed Brown storage of the matrix. This is done in a non scalable way since the 8457b952d6SSatish Balay length of colmap equals the global matrix length. 8557b952d6SSatish Balay */ 864a2ae208SSatish Balay #undef __FUNCT__ 874a2ae208SSatish Balay #define __FUNCT__ "CreateColmap_MPIBAIJ_Private" 88dfbe8321SBarry Smith PetscErrorCode CreateColmap_MPIBAIJ_Private(Mat mat) 8957b952d6SSatish Balay { 9057b952d6SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 9157b952d6SSatish Balay Mat_SeqBAIJ *B = (Mat_SeqBAIJ*)baij->B->data; 926849ba73SBarry Smith PetscErrorCode ierr; 93d0f46423SBarry Smith PetscInt nbs = B->nbs,i,bs=mat->rmap->bs; 9457b952d6SSatish Balay 95d64ed03dSBarry Smith PetscFunctionBegin; 96aa482453SBarry Smith #if defined (PETSC_USE_CTABLE) 97f14a1c24SBarry Smith ierr = PetscTableCreate(baij->nbs,&baij->colmap);CHKERRQ(ierr); 9848e59246SSatish Balay for (i=0; i<nbs; i++){ 990f5bd95cSBarry Smith ierr = PetscTableAdd(baij->colmap,baij->garray[i]+1,i*bs+1);CHKERRQ(ierr); 10048e59246SSatish Balay } 10148e59246SSatish Balay #else 102b24ad042SBarry Smith ierr = PetscMalloc((baij->Nbs+1)*sizeof(PetscInt),&baij->colmap);CHKERRQ(ierr); 10352e6d16bSBarry Smith ierr = PetscLogObjectMemory(mat,baij->Nbs*sizeof(PetscInt));CHKERRQ(ierr); 104b24ad042SBarry Smith ierr = PetscMemzero(baij->colmap,baij->Nbs*sizeof(PetscInt));CHKERRQ(ierr); 105928fc39bSSatish Balay for (i=0; i<nbs; i++) baij->colmap[baij->garray[i]] = i*bs+1; 10648e59246SSatish Balay #endif 1073a40ed3dSBarry Smith PetscFunctionReturn(0); 10857b952d6SSatish Balay } 10957b952d6SSatish Balay 11080c1aa95SSatish Balay #define CHUNKSIZE 10 11180c1aa95SSatish Balay 112f5e9677aSSatish Balay #define MatSetValues_SeqBAIJ_A_Private(row,col,value,addv) \ 11380c1aa95SSatish Balay { \ 11480c1aa95SSatish Balay \ 11580c1aa95SSatish Balay brow = row/bs; \ 11680c1aa95SSatish Balay rp = aj + ai[brow]; ap = aa + bs2*ai[brow]; \ 117ac7a638eSSatish Balay rmax = aimax[brow]; nrow = ailen[brow]; \ 11880c1aa95SSatish Balay bcol = col/bs; \ 11980c1aa95SSatish Balay ridx = row % bs; cidx = col % bs; \ 120ab26458aSBarry Smith low = 0; high = nrow; \ 121ab26458aSBarry Smith while (high-low > 3) { \ 122ab26458aSBarry Smith t = (low+high)/2; \ 123ab26458aSBarry Smith if (rp[t] > bcol) high = t; \ 124ab26458aSBarry Smith else low = t; \ 125ab26458aSBarry Smith } \ 126ab26458aSBarry Smith for (_i=low; _i<high; _i++) { \ 12780c1aa95SSatish Balay if (rp[_i] > bcol) break; \ 12880c1aa95SSatish Balay if (rp[_i] == bcol) { \ 12980c1aa95SSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 130eada6651SSatish Balay if (addv == ADD_VALUES) *bap += value; \ 131eada6651SSatish Balay else *bap = value; \ 132ac7a638eSSatish Balay goto a_noinsert; \ 13380c1aa95SSatish Balay } \ 13480c1aa95SSatish Balay } \ 13589280ab3SLois Curfman McInnes if (a->nonew == 1) goto a_noinsert; \ 136e32f2f54SBarry Smith if (a->nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \ 137421e10b8SBarry Smith MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,brow,bcol,rmax,aa,ai,aj,rp,ap,aimax,a->nonew,MatScalar); \ 13880c1aa95SSatish Balay N = nrow++ - 1; \ 13980c1aa95SSatish Balay /* shift up all the later entries in this row */ \ 14080c1aa95SSatish Balay for (ii=N; ii>=_i; ii--) { \ 14180c1aa95SSatish Balay rp[ii+1] = rp[ii]; \ 1423eda8832SBarry Smith ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 14380c1aa95SSatish Balay } \ 1443eda8832SBarry Smith if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr); } \ 14580c1aa95SSatish Balay rp[_i] = bcol; \ 14680c1aa95SSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 147ac7a638eSSatish Balay a_noinsert:; \ 14880c1aa95SSatish Balay ailen[brow] = nrow; \ 14980c1aa95SSatish Balay } 15057b952d6SSatish Balay 151ac7a638eSSatish Balay #define MatSetValues_SeqBAIJ_B_Private(row,col,value,addv) \ 152ac7a638eSSatish Balay { \ 153ac7a638eSSatish Balay brow = row/bs; \ 154ac7a638eSSatish Balay rp = bj + bi[brow]; ap = ba + bs2*bi[brow]; \ 155ac7a638eSSatish Balay rmax = bimax[brow]; nrow = bilen[brow]; \ 156ac7a638eSSatish Balay bcol = col/bs; \ 157ac7a638eSSatish Balay ridx = row % bs; cidx = col % bs; \ 158ac7a638eSSatish Balay low = 0; high = nrow; \ 159ac7a638eSSatish Balay while (high-low > 3) { \ 160ac7a638eSSatish Balay t = (low+high)/2; \ 161ac7a638eSSatish Balay if (rp[t] > bcol) high = t; \ 162ac7a638eSSatish Balay else low = t; \ 163ac7a638eSSatish Balay } \ 164ac7a638eSSatish Balay for (_i=low; _i<high; _i++) { \ 165ac7a638eSSatish Balay if (rp[_i] > bcol) break; \ 166ac7a638eSSatish Balay if (rp[_i] == bcol) { \ 167ac7a638eSSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 168ac7a638eSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 169ac7a638eSSatish Balay else *bap = value; \ 170ac7a638eSSatish Balay goto b_noinsert; \ 171ac7a638eSSatish Balay } \ 172ac7a638eSSatish Balay } \ 17389280ab3SLois Curfman McInnes if (b->nonew == 1) goto b_noinsert; \ 174e32f2f54SBarry Smith if (b->nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \ 175421e10b8SBarry Smith MatSeqXAIJReallocateAIJ(B,b->mbs,bs2,nrow,brow,bcol,rmax,ba,bi,bj,rp,ap,bimax,b->nonew,MatScalar); \ 176085a36d4SBarry Smith CHKMEMQ;\ 177ac7a638eSSatish Balay N = nrow++ - 1; \ 178ac7a638eSSatish Balay /* shift up all the later entries in this row */ \ 179ac7a638eSSatish Balay for (ii=N; ii>=_i; ii--) { \ 180ac7a638eSSatish Balay rp[ii+1] = rp[ii]; \ 1813eda8832SBarry Smith ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 182ac7a638eSSatish Balay } \ 1833eda8832SBarry Smith if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr);} \ 184ac7a638eSSatish Balay rp[_i] = bcol; \ 185ac7a638eSSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 186ac7a638eSSatish Balay b_noinsert:; \ 187ac7a638eSSatish Balay bilen[brow] = nrow; \ 188ac7a638eSSatish Balay } 189ac7a638eSSatish Balay 1904a2ae208SSatish Balay #undef __FUNCT__ 1914a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_MPIBAIJ" 192b24ad042SBarry Smith PetscErrorCode MatSetValues_MPIBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv) 19357b952d6SSatish Balay { 19457b952d6SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 19593fea6afSBarry Smith MatScalar value; 196273d9f13SBarry Smith PetscTruth roworiented = baij->roworiented; 197dfbe8321SBarry Smith PetscErrorCode ierr; 198b24ad042SBarry Smith PetscInt i,j,row,col; 199d0f46423SBarry Smith PetscInt rstart_orig=mat->rmap->rstart; 200d0f46423SBarry Smith PetscInt rend_orig=mat->rmap->rend,cstart_orig=mat->cmap->rstart; 201d0f46423SBarry Smith PetscInt cend_orig=mat->cmap->rend,bs=mat->rmap->bs; 20257b952d6SSatish Balay 203eada6651SSatish Balay /* Some Variables required in the macro */ 20480c1aa95SSatish Balay Mat A = baij->A; 20580c1aa95SSatish Balay Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)(A)->data; 206b24ad042SBarry Smith PetscInt *aimax=a->imax,*ai=a->i,*ailen=a->ilen,*aj=a->j; 2073eda8832SBarry Smith MatScalar *aa=a->a; 208ac7a638eSSatish Balay 209ac7a638eSSatish Balay Mat B = baij->B; 210ac7a638eSSatish Balay Mat_SeqBAIJ *b = (Mat_SeqBAIJ*)(B)->data; 211b24ad042SBarry Smith PetscInt *bimax=b->imax,*bi=b->i,*bilen=b->ilen,*bj=b->j; 2123eda8832SBarry Smith MatScalar *ba=b->a; 213ac7a638eSSatish Balay 214b24ad042SBarry Smith PetscInt *rp,ii,nrow,_i,rmax,N,brow,bcol; 215b24ad042SBarry Smith PetscInt low,high,t,ridx,cidx,bs2=a->bs2; 2163eda8832SBarry Smith MatScalar *ap,*bap; 21780c1aa95SSatish Balay 218d64ed03dSBarry Smith PetscFunctionBegin; 21971fd2e92SBarry Smith if (v) PetscValidScalarPointer(v,6); 22057b952d6SSatish Balay for (i=0; i<m; i++) { 2215ef9f2a5SBarry Smith if (im[i] < 0) continue; 2222515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 223e32f2f54SBarry Smith if (im[i] >= mat->rmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],mat->rmap->N-1); 224639f9d9dSBarry Smith #endif 22557b952d6SSatish Balay if (im[i] >= rstart_orig && im[i] < rend_orig) { 22657b952d6SSatish Balay row = im[i] - rstart_orig; 22757b952d6SSatish Balay for (j=0; j<n; j++) { 22857b952d6SSatish Balay if (in[j] >= cstart_orig && in[j] < cend_orig){ 22957b952d6SSatish Balay col = in[j] - cstart_orig; 23057b952d6SSatish Balay if (roworiented) value = v[i*n+j]; else value = v[i+j*m]; 231f5e9677aSSatish Balay MatSetValues_SeqBAIJ_A_Private(row,col,value,addv); 23280c1aa95SSatish Balay /* ierr = MatSetValues_SeqBAIJ(baij->A,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 23373959e64SBarry Smith } else if (in[j] < 0) continue; 2342515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 235cb9801acSJed Brown else if (in[j] >= mat->cmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",in[i],mat->cmap->N-1); 236639f9d9dSBarry Smith #endif 23757b952d6SSatish Balay else { 23857b952d6SSatish Balay if (mat->was_assembled) { 239905e6a2fSBarry Smith if (!baij->colmap) { 240905e6a2fSBarry Smith ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 241905e6a2fSBarry Smith } 242aa482453SBarry Smith #if defined (PETSC_USE_CTABLE) 2430f5bd95cSBarry Smith ierr = PetscTableFind(baij->colmap,in[j]/bs + 1,&col);CHKERRQ(ierr); 244bba1ac68SSatish Balay col = col - 1; 24548e59246SSatish Balay #else 246bba1ac68SSatish Balay col = baij->colmap[in[j]/bs] - 1; 24748e59246SSatish Balay #endif 24857b952d6SSatish Balay if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) { 24957b952d6SSatish Balay ierr = DisAssemble_MPIBAIJ(mat);CHKERRQ(ierr); 2508295de27SSatish Balay col = in[j]; 2519bf004c3SSatish Balay /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */ 2529bf004c3SSatish Balay B = baij->B; 2539bf004c3SSatish Balay b = (Mat_SeqBAIJ*)(B)->data; 2549bf004c3SSatish Balay bimax=b->imax;bi=b->i;bilen=b->ilen;bj=b->j; 2559bf004c3SSatish Balay ba=b->a; 256bba1ac68SSatish Balay } else col += in[j]%bs; 2578295de27SSatish Balay } else col = in[j]; 25857b952d6SSatish Balay if (roworiented) value = v[i*n+j]; else value = v[i+j*m]; 25990da58bdSSatish Balay MatSetValues_SeqBAIJ_B_Private(row,col,value,addv); 26090da58bdSSatish Balay /* ierr = MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 26157b952d6SSatish Balay } 26257b952d6SSatish Balay } 263d64ed03dSBarry Smith } else { 26490f02eecSBarry Smith if (!baij->donotstash) { 265ff2fd236SBarry Smith if (roworiented) { 266b400d20cSBarry Smith ierr = MatStashValuesRow_Private(&mat->stash,im[i],n,in,v+i*n,PETSC_FALSE);CHKERRQ(ierr); 267ff2fd236SBarry Smith } else { 268b400d20cSBarry Smith ierr = MatStashValuesCol_Private(&mat->stash,im[i],n,in,v+i,m,PETSC_FALSE);CHKERRQ(ierr); 26957b952d6SSatish Balay } 27057b952d6SSatish Balay } 27157b952d6SSatish Balay } 27290f02eecSBarry Smith } 2733a40ed3dSBarry Smith PetscFunctionReturn(0); 27457b952d6SSatish Balay } 27557b952d6SSatish Balay 2764a2ae208SSatish Balay #undef __FUNCT__ 27797e5c40aSBarry Smith #define __FUNCT__ "MatSetValuesBlocked_MPIBAIJ" 27897e5c40aSBarry Smith PetscErrorCode MatSetValuesBlocked_MPIBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv) 279ab26458aSBarry Smith { 280ab26458aSBarry Smith Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 281dd6ea824SBarry Smith const PetscScalar *value; 282f15d580aSBarry Smith MatScalar *barray=baij->barray; 283273d9f13SBarry Smith PetscTruth roworiented = baij->roworiented; 284dfbe8321SBarry Smith PetscErrorCode ierr; 285899cda47SBarry Smith PetscInt i,j,ii,jj,row,col,rstart=baij->rstartbs; 286899cda47SBarry Smith PetscInt rend=baij->rendbs,cstart=baij->cstartbs,stepval; 287d0f46423SBarry Smith PetscInt cend=baij->cendbs,bs=mat->rmap->bs,bs2=baij->bs2; 288ab26458aSBarry Smith 289b16ae2b1SBarry Smith PetscFunctionBegin; 29030793edcSSatish Balay if(!barray) { 29182502324SSatish Balay ierr = PetscMalloc(bs2*sizeof(MatScalar),&barray);CHKERRQ(ierr); 29282502324SSatish Balay baij->barray = barray; 29330793edcSSatish Balay } 29430793edcSSatish Balay 295ab26458aSBarry Smith if (roworiented) { 296ab26458aSBarry Smith stepval = (n-1)*bs; 297ab26458aSBarry Smith } else { 298ab26458aSBarry Smith stepval = (m-1)*bs; 299ab26458aSBarry Smith } 300ab26458aSBarry Smith for (i=0; i<m; i++) { 3015ef9f2a5SBarry Smith if (im[i] < 0) continue; 3022515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 303e32f2f54SBarry Smith if (im[i] >= baij->Mbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large, row %D max %D",im[i],baij->Mbs-1); 304ab26458aSBarry Smith #endif 305ab26458aSBarry Smith if (im[i] >= rstart && im[i] < rend) { 306ab26458aSBarry Smith row = im[i] - rstart; 307ab26458aSBarry Smith for (j=0; j<n; j++) { 30815b57d14SSatish Balay /* If NumCol = 1 then a copy is not required */ 30915b57d14SSatish Balay if ((roworiented) && (n == 1)) { 310f15d580aSBarry Smith barray = (MatScalar*)v + i*bs2; 31115b57d14SSatish Balay } else if((!roworiented) && (m == 1)) { 312f15d580aSBarry Smith barray = (MatScalar*)v + j*bs2; 31315b57d14SSatish Balay } else { /* Here a copy is required */ 314ab26458aSBarry Smith if (roworiented) { 315ab26458aSBarry Smith value = v + i*(stepval+bs)*bs + j*bs; 316ab26458aSBarry Smith } else { 317ab26458aSBarry Smith value = v + j*(stepval+bs)*bs + i*bs; 318abef11f7SSatish Balay } 31947513183SBarry Smith for (ii=0; ii<bs; ii++,value+=stepval) { 32047513183SBarry Smith for (jj=0; jj<bs; jj++) { 32130793edcSSatish Balay *barray++ = *value++; 32247513183SBarry Smith } 32347513183SBarry Smith } 32430793edcSSatish Balay barray -=bs2; 32515b57d14SSatish Balay } 326abef11f7SSatish Balay 327abef11f7SSatish Balay if (in[j] >= cstart && in[j] < cend){ 328abef11f7SSatish Balay col = in[j] - cstart; 32997e5c40aSBarry Smith ierr = MatSetValuesBlocked_SeqBAIJ(baij->A,1,&row,1,&col,barray,addv);CHKERRQ(ierr); 330ab26458aSBarry Smith } 3315ef9f2a5SBarry Smith else if (in[j] < 0) continue; 3322515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 333cb9801acSJed Brown else if (in[j] >= baij->Nbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large, col %D max %D",in[j],baij->Nbs-1); 334ab26458aSBarry Smith #endif 335ab26458aSBarry Smith else { 336ab26458aSBarry Smith if (mat->was_assembled) { 337ab26458aSBarry Smith if (!baij->colmap) { 338ab26458aSBarry Smith ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 339ab26458aSBarry Smith } 340a5eb4965SSatish Balay 3412515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 342aa482453SBarry Smith #if defined (PETSC_USE_CTABLE) 343b24ad042SBarry Smith { PetscInt data; 3440f5bd95cSBarry Smith ierr = PetscTableFind(baij->colmap,in[j]+1,&data);CHKERRQ(ierr); 345e32f2f54SBarry Smith if ((data - 1) % bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap"); 346fa46199cSSatish Balay } 34748e59246SSatish Balay #else 348e32f2f54SBarry Smith if ((baij->colmap[in[j]] - 1) % bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap"); 349a5eb4965SSatish Balay #endif 35048e59246SSatish Balay #endif 351aa482453SBarry Smith #if defined (PETSC_USE_CTABLE) 3520f5bd95cSBarry Smith ierr = PetscTableFind(baij->colmap,in[j]+1,&col);CHKERRQ(ierr); 353fa46199cSSatish Balay col = (col - 1)/bs; 35448e59246SSatish Balay #else 355a5eb4965SSatish Balay col = (baij->colmap[in[j]] - 1)/bs; 35648e59246SSatish Balay #endif 357ab26458aSBarry Smith if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) { 358ab26458aSBarry Smith ierr = DisAssemble_MPIBAIJ(mat);CHKERRQ(ierr); 359ab26458aSBarry Smith col = in[j]; 360ab26458aSBarry Smith } 361ab26458aSBarry Smith } 362ab26458aSBarry Smith else col = in[j]; 36397e5c40aSBarry Smith ierr = MatSetValuesBlocked_SeqBAIJ(baij->B,1,&row,1,&col,barray,addv);CHKERRQ(ierr); 364ab26458aSBarry Smith } 365ab26458aSBarry Smith } 366d64ed03dSBarry Smith } else { 367ab26458aSBarry Smith if (!baij->donotstash) { 368ff2fd236SBarry Smith if (roworiented) { 3696fa18ffdSBarry Smith ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 370ff2fd236SBarry Smith } else { 3716fa18ffdSBarry Smith ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 372ff2fd236SBarry Smith } 373abef11f7SSatish Balay } 374ab26458aSBarry Smith } 375ab26458aSBarry Smith } 3763a40ed3dSBarry Smith PetscFunctionReturn(0); 377ab26458aSBarry Smith } 3786fa18ffdSBarry Smith 3790bdbc534SSatish Balay #define HASH_KEY 0.6180339887 380b24ad042SBarry Smith #define HASH(size,key,tmp) (tmp = (key)*HASH_KEY,(PetscInt)((size)*(tmp-(PetscInt)tmp))) 381b24ad042SBarry Smith /* #define HASH(size,key) ((PetscInt)((size)*fmod(((key)*HASH_KEY),1))) */ 382b24ad042SBarry Smith /* #define HASH(size,key,tmp) ((PetscInt)((size)*fmod(((key)*HASH_KEY),1))) */ 3834a2ae208SSatish Balay #undef __FUNCT__ 38497e5c40aSBarry Smith #define __FUNCT__ "MatSetValues_MPIBAIJ_HT" 38597e5c40aSBarry Smith PetscErrorCode MatSetValues_MPIBAIJ_HT(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv) 3860bdbc534SSatish Balay { 3870bdbc534SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 388273d9f13SBarry Smith PetscTruth roworiented = baij->roworiented; 389dfbe8321SBarry Smith PetscErrorCode ierr; 390b24ad042SBarry Smith PetscInt i,j,row,col; 391d0f46423SBarry Smith PetscInt rstart_orig=mat->rmap->rstart; 392d0f46423SBarry Smith PetscInt rend_orig=mat->rmap->rend,Nbs=baij->Nbs; 393d0f46423SBarry Smith PetscInt h1,key,size=baij->ht_size,bs=mat->rmap->bs,*HT=baij->ht,idx; 394329f5518SBarry Smith PetscReal tmp; 3953eda8832SBarry Smith MatScalar **HD = baij->hd,value; 3962515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 397b24ad042SBarry Smith PetscInt total_ct=baij->ht_total_ct,insert_ct=baij->ht_insert_ct; 3984a15367fSSatish Balay #endif 3990bdbc534SSatish Balay 4000bdbc534SSatish Balay PetscFunctionBegin; 40171fd2e92SBarry Smith if (v) PetscValidScalarPointer(v,6); 4020bdbc534SSatish Balay for (i=0; i<m; i++) { 4032515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 404e32f2f54SBarry Smith if (im[i] < 0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative row"); 405e32f2f54SBarry Smith if (im[i] >= mat->rmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],mat->rmap->N-1); 4060bdbc534SSatish Balay #endif 4070bdbc534SSatish Balay row = im[i]; 408c2760754SSatish Balay if (row >= rstart_orig && row < rend_orig) { 4090bdbc534SSatish Balay for (j=0; j<n; j++) { 4100bdbc534SSatish Balay col = in[j]; 4116fa18ffdSBarry Smith if (roworiented) value = v[i*n+j]; else value = v[i+j*m]; 412b24ad042SBarry Smith /* Look up PetscInto the Hash Table */ 413c2760754SSatish Balay key = (row/bs)*Nbs+(col/bs)+1; 414c2760754SSatish Balay h1 = HASH(size,key,tmp); 4150bdbc534SSatish Balay 416c2760754SSatish Balay 417c2760754SSatish Balay idx = h1; 4182515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 419187ce0cbSSatish Balay insert_ct++; 420187ce0cbSSatish Balay total_ct++; 421187ce0cbSSatish Balay if (HT[idx] != key) { 422187ce0cbSSatish Balay for (idx=h1; (idx<size) && (HT[idx]!=key); idx++,total_ct++); 423187ce0cbSSatish Balay if (idx == size) { 424187ce0cbSSatish Balay for (idx=0; (idx<h1) && (HT[idx]!=key); idx++,total_ct++); 425187ce0cbSSatish Balay if (idx == h1) { 426e32f2f54SBarry Smith SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"(%D,%D) has no entry in the hash table", row, col); 427187ce0cbSSatish Balay } 428187ce0cbSSatish Balay } 429187ce0cbSSatish Balay } 430187ce0cbSSatish Balay #else 431c2760754SSatish Balay if (HT[idx] != key) { 432c2760754SSatish Balay for (idx=h1; (idx<size) && (HT[idx]!=key); idx++); 433c2760754SSatish Balay if (idx == size) { 434c2760754SSatish Balay for (idx=0; (idx<h1) && (HT[idx]!=key); idx++); 435c2760754SSatish Balay if (idx == h1) { 436e32f2f54SBarry Smith SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"(%D,%D) has no entry in the hash table", row, col); 437c2760754SSatish Balay } 438c2760754SSatish Balay } 439c2760754SSatish Balay } 440187ce0cbSSatish Balay #endif 441c2760754SSatish Balay /* A HASH table entry is found, so insert the values at the correct address */ 442c2760754SSatish Balay if (addv == ADD_VALUES) *(HD[idx]+ (col % bs)*bs + (row % bs)) += value; 443c2760754SSatish Balay else *(HD[idx]+ (col % bs)*bs + (row % bs)) = value; 4440bdbc534SSatish Balay } 4450bdbc534SSatish Balay } else { 4460bdbc534SSatish Balay if (!baij->donotstash) { 447ff2fd236SBarry Smith if (roworiented) { 448b400d20cSBarry Smith ierr = MatStashValuesRow_Private(&mat->stash,im[i],n,in,v+i*n,PETSC_FALSE);CHKERRQ(ierr); 449ff2fd236SBarry Smith } else { 450b400d20cSBarry Smith ierr = MatStashValuesCol_Private(&mat->stash,im[i],n,in,v+i,m,PETSC_FALSE);CHKERRQ(ierr); 4510bdbc534SSatish Balay } 4520bdbc534SSatish Balay } 4530bdbc534SSatish Balay } 4540bdbc534SSatish Balay } 4552515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 456187ce0cbSSatish Balay baij->ht_total_ct = total_ct; 457187ce0cbSSatish Balay baij->ht_insert_ct = insert_ct; 458187ce0cbSSatish Balay #endif 4590bdbc534SSatish Balay PetscFunctionReturn(0); 4600bdbc534SSatish Balay } 4610bdbc534SSatish Balay 4624a2ae208SSatish Balay #undef __FUNCT__ 46397e5c40aSBarry Smith #define __FUNCT__ "MatSetValuesBlocked_MPIBAIJ_HT" 46497e5c40aSBarry Smith PetscErrorCode MatSetValuesBlocked_MPIBAIJ_HT(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv) 4650bdbc534SSatish Balay { 4660bdbc534SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 467273d9f13SBarry Smith PetscTruth roworiented = baij->roworiented; 468dfbe8321SBarry Smith PetscErrorCode ierr; 469b24ad042SBarry Smith PetscInt i,j,ii,jj,row,col; 470899cda47SBarry Smith PetscInt rstart=baij->rstartbs; 471d0f46423SBarry Smith PetscInt rend=mat->rmap->rend,stepval,bs=mat->rmap->bs,bs2=baij->bs2,nbs2=n*bs2; 472b24ad042SBarry Smith PetscInt h1,key,size=baij->ht_size,idx,*HT=baij->ht,Nbs=baij->Nbs; 473329f5518SBarry Smith PetscReal tmp; 4743eda8832SBarry Smith MatScalar **HD = baij->hd,*baij_a; 475dd6ea824SBarry Smith const PetscScalar *v_t,*value; 4762515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 477b24ad042SBarry Smith PetscInt total_ct=baij->ht_total_ct,insert_ct=baij->ht_insert_ct; 4784a15367fSSatish Balay #endif 4790bdbc534SSatish Balay 480d0a41580SSatish Balay PetscFunctionBegin; 481d0a41580SSatish Balay 4820bdbc534SSatish Balay if (roworiented) { 4830bdbc534SSatish Balay stepval = (n-1)*bs; 4840bdbc534SSatish Balay } else { 4850bdbc534SSatish Balay stepval = (m-1)*bs; 4860bdbc534SSatish Balay } 4870bdbc534SSatish Balay for (i=0; i<m; i++) { 4882515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 489e32f2f54SBarry Smith if (im[i] < 0) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %D",im[i]); 490e32f2f54SBarry Smith if (im[i] >= baij->Mbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],baij->Mbs-1); 4910bdbc534SSatish Balay #endif 4920bdbc534SSatish Balay row = im[i]; 493ab715e2cSSatish Balay v_t = v + i*nbs2; 494c2760754SSatish Balay if (row >= rstart && row < rend) { 4950bdbc534SSatish Balay for (j=0; j<n; j++) { 4960bdbc534SSatish Balay col = in[j]; 4970bdbc534SSatish Balay 4980bdbc534SSatish Balay /* Look up into the Hash Table */ 499c2760754SSatish Balay key = row*Nbs+col+1; 500c2760754SSatish Balay h1 = HASH(size,key,tmp); 5010bdbc534SSatish Balay 502c2760754SSatish Balay idx = h1; 5032515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 504187ce0cbSSatish Balay total_ct++; 505187ce0cbSSatish Balay insert_ct++; 506187ce0cbSSatish Balay if (HT[idx] != key) { 507187ce0cbSSatish Balay for (idx=h1; (idx<size) && (HT[idx]!=key); idx++,total_ct++); 508187ce0cbSSatish Balay if (idx == size) { 509187ce0cbSSatish Balay for (idx=0; (idx<h1) && (HT[idx]!=key); idx++,total_ct++); 510187ce0cbSSatish Balay if (idx == h1) { 511e32f2f54SBarry Smith SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"(%D,%D) has no entry in the hash table", row, col); 512187ce0cbSSatish Balay } 513187ce0cbSSatish Balay } 514187ce0cbSSatish Balay } 515187ce0cbSSatish Balay #else 516c2760754SSatish Balay if (HT[idx] != key) { 517c2760754SSatish Balay for (idx=h1; (idx<size) && (HT[idx]!=key); idx++); 518c2760754SSatish Balay if (idx == size) { 519c2760754SSatish Balay for (idx=0; (idx<h1) && (HT[idx]!=key); idx++); 520c2760754SSatish Balay if (idx == h1) { 521e32f2f54SBarry Smith SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"(%D,%D) has no entry in the hash table", row, col); 522c2760754SSatish Balay } 523c2760754SSatish Balay } 524c2760754SSatish Balay } 525187ce0cbSSatish Balay #endif 526c2760754SSatish Balay baij_a = HD[idx]; 5270bdbc534SSatish Balay if (roworiented) { 528c2760754SSatish Balay /*value = v + i*(stepval+bs)*bs + j*bs;*/ 529187ce0cbSSatish Balay /* value = v + (i*(stepval+bs)+j)*bs; */ 530187ce0cbSSatish Balay value = v_t; 531187ce0cbSSatish Balay v_t += bs; 532fef45726SSatish Balay if (addv == ADD_VALUES) { 533c2760754SSatish Balay for (ii=0; ii<bs; ii++,value+=stepval) { 534c2760754SSatish Balay for (jj=ii; jj<bs2; jj+=bs) { 535fef45726SSatish Balay baij_a[jj] += *value++; 536b4cc0f5aSSatish Balay } 537b4cc0f5aSSatish Balay } 538fef45726SSatish Balay } else { 539c2760754SSatish Balay for (ii=0; ii<bs; ii++,value+=stepval) { 540c2760754SSatish Balay for (jj=ii; jj<bs2; jj+=bs) { 541fef45726SSatish Balay baij_a[jj] = *value++; 542fef45726SSatish Balay } 543fef45726SSatish Balay } 544fef45726SSatish Balay } 5450bdbc534SSatish Balay } else { 5460bdbc534SSatish Balay value = v + j*(stepval+bs)*bs + i*bs; 547fef45726SSatish Balay if (addv == ADD_VALUES) { 548b4cc0f5aSSatish Balay for (ii=0; ii<bs; ii++,value+=stepval,baij_a+=bs) { 5490bdbc534SSatish Balay for (jj=0; jj<bs; jj++) { 550fef45726SSatish Balay baij_a[jj] += *value++; 551fef45726SSatish Balay } 552fef45726SSatish Balay } 553fef45726SSatish Balay } else { 554fef45726SSatish Balay for (ii=0; ii<bs; ii++,value+=stepval,baij_a+=bs) { 555fef45726SSatish Balay for (jj=0; jj<bs; jj++) { 556fef45726SSatish Balay baij_a[jj] = *value++; 557fef45726SSatish Balay } 558b4cc0f5aSSatish Balay } 5590bdbc534SSatish Balay } 5600bdbc534SSatish Balay } 5610bdbc534SSatish Balay } 5620bdbc534SSatish Balay } else { 5630bdbc534SSatish Balay if (!baij->donotstash) { 5640bdbc534SSatish Balay if (roworiented) { 5658798bf22SSatish Balay ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 5660bdbc534SSatish Balay } else { 5678798bf22SSatish Balay ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 5680bdbc534SSatish Balay } 5690bdbc534SSatish Balay } 5700bdbc534SSatish Balay } 5710bdbc534SSatish Balay } 5722515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 573187ce0cbSSatish Balay baij->ht_total_ct = total_ct; 574187ce0cbSSatish Balay baij->ht_insert_ct = insert_ct; 575187ce0cbSSatish Balay #endif 5760bdbc534SSatish Balay PetscFunctionReturn(0); 5770bdbc534SSatish Balay } 578133cdb44SSatish Balay 5794a2ae208SSatish Balay #undef __FUNCT__ 5804a2ae208SSatish Balay #define __FUNCT__ "MatGetValues_MPIBAIJ" 581b24ad042SBarry Smith PetscErrorCode MatGetValues_MPIBAIJ(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[]) 582d6de1c52SSatish Balay { 583d6de1c52SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 5846849ba73SBarry Smith PetscErrorCode ierr; 585d0f46423SBarry Smith PetscInt bs=mat->rmap->bs,i,j,bsrstart = mat->rmap->rstart,bsrend = mat->rmap->rend; 586d0f46423SBarry Smith PetscInt bscstart = mat->cmap->rstart,bscend = mat->cmap->rend,row,col,data; 587d6de1c52SSatish Balay 588133cdb44SSatish Balay PetscFunctionBegin; 589d6de1c52SSatish Balay for (i=0; i<m; i++) { 590e32f2f54SBarry Smith if (idxm[i] < 0) continue; /* SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %D",idxm[i]);*/ 591e32f2f54SBarry Smith if (idxm[i] >= mat->rmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",idxm[i],mat->rmap->N-1); 592d6de1c52SSatish Balay if (idxm[i] >= bsrstart && idxm[i] < bsrend) { 593d6de1c52SSatish Balay row = idxm[i] - bsrstart; 594d6de1c52SSatish Balay for (j=0; j<n; j++) { 595e32f2f54SBarry Smith if (idxn[j] < 0) continue; /* SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative column: %D",idxn[j]); */ 596e32f2f54SBarry Smith if (idxn[j] >= mat->cmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",idxn[j],mat->cmap->N-1); 597d6de1c52SSatish Balay if (idxn[j] >= bscstart && idxn[j] < bscend){ 598d6de1c52SSatish Balay col = idxn[j] - bscstart; 59998dd23e9SBarry Smith ierr = MatGetValues_SeqBAIJ(baij->A,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr); 600d64ed03dSBarry Smith } else { 601905e6a2fSBarry Smith if (!baij->colmap) { 602905e6a2fSBarry Smith ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 603905e6a2fSBarry Smith } 604aa482453SBarry Smith #if defined (PETSC_USE_CTABLE) 6050f5bd95cSBarry Smith ierr = PetscTableFind(baij->colmap,idxn[j]/bs+1,&data);CHKERRQ(ierr); 606fa46199cSSatish Balay data --; 60748e59246SSatish Balay #else 60848e59246SSatish Balay data = baij->colmap[idxn[j]/bs]-1; 60948e59246SSatish Balay #endif 61048e59246SSatish Balay if((data < 0) || (baij->garray[data/bs] != idxn[j]/bs)) *(v+i*n+j) = 0.0; 611d9d09a02SSatish Balay else { 61248e59246SSatish Balay col = data + idxn[j]%bs; 61398dd23e9SBarry Smith ierr = MatGetValues_SeqBAIJ(baij->B,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr); 614d6de1c52SSatish Balay } 615d6de1c52SSatish Balay } 616d6de1c52SSatish Balay } 617d64ed03dSBarry Smith } else { 618e32f2f54SBarry Smith SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local values currently supported"); 619d6de1c52SSatish Balay } 620d6de1c52SSatish Balay } 6213a40ed3dSBarry Smith PetscFunctionReturn(0); 622d6de1c52SSatish Balay } 623d6de1c52SSatish Balay 6244a2ae208SSatish Balay #undef __FUNCT__ 6254a2ae208SSatish Balay #define __FUNCT__ "MatNorm_MPIBAIJ" 626dfbe8321SBarry Smith PetscErrorCode MatNorm_MPIBAIJ(Mat mat,NormType type,PetscReal *nrm) 627d6de1c52SSatish Balay { 628d6de1c52SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 629d6de1c52SSatish Balay Mat_SeqBAIJ *amat = (Mat_SeqBAIJ*)baij->A->data,*bmat = (Mat_SeqBAIJ*)baij->B->data; 630dfbe8321SBarry Smith PetscErrorCode ierr; 631d0f46423SBarry Smith PetscInt i,j,bs2=baij->bs2,bs=baij->A->rmap->bs,nz,row,col; 632329f5518SBarry Smith PetscReal sum = 0.0; 6333eda8832SBarry Smith MatScalar *v; 634d6de1c52SSatish Balay 635d64ed03dSBarry Smith PetscFunctionBegin; 636d6de1c52SSatish Balay if (baij->size == 1) { 637064f8208SBarry Smith ierr = MatNorm(baij->A,type,nrm);CHKERRQ(ierr); 638d6de1c52SSatish Balay } else { 639d6de1c52SSatish Balay if (type == NORM_FROBENIUS) { 640d6de1c52SSatish Balay v = amat->a; 6418a62d963SHong Zhang nz = amat->nz*bs2; 6428a62d963SHong Zhang for (i=0; i<nz; i++) { 643aa482453SBarry Smith #if defined(PETSC_USE_COMPLEX) 644329f5518SBarry Smith sum += PetscRealPart(PetscConj(*v)*(*v)); v++; 645d6de1c52SSatish Balay #else 646d6de1c52SSatish Balay sum += (*v)*(*v); v++; 647d6de1c52SSatish Balay #endif 648d6de1c52SSatish Balay } 649d6de1c52SSatish Balay v = bmat->a; 6508a62d963SHong Zhang nz = bmat->nz*bs2; 6518a62d963SHong Zhang for (i=0; i<nz; i++) { 652aa482453SBarry Smith #if defined(PETSC_USE_COMPLEX) 653329f5518SBarry Smith sum += PetscRealPart(PetscConj(*v)*(*v)); v++; 654d6de1c52SSatish Balay #else 655d6de1c52SSatish Balay sum += (*v)*(*v); v++; 656d6de1c52SSatish Balay #endif 657d6de1c52SSatish Balay } 6587adad957SLisandro Dalcin ierr = MPI_Allreduce(&sum,nrm,1,MPIU_REAL,MPI_SUM,((PetscObject)mat)->comm);CHKERRQ(ierr); 659064f8208SBarry Smith *nrm = sqrt(*nrm); 6608a62d963SHong Zhang } else if (type == NORM_1) { /* max column sum */ 6618a62d963SHong Zhang PetscReal *tmp,*tmp2; 662899cda47SBarry Smith PetscInt *jj,*garray=baij->garray,cstart=baij->rstartbs; 663fca92195SBarry Smith ierr = PetscMalloc2(mat->cmap->N,PetscReal,&tmp,mat->cmap->N,PetscReal,&tmp2);CHKERRQ(ierr); 664d0f46423SBarry Smith ierr = PetscMemzero(tmp,mat->cmap->N*sizeof(PetscReal));CHKERRQ(ierr); 6658a62d963SHong Zhang v = amat->a; jj = amat->j; 6668a62d963SHong Zhang for (i=0; i<amat->nz; i++) { 6678a62d963SHong Zhang for (j=0; j<bs; j++){ 6688a62d963SHong Zhang col = bs*(cstart + *jj) + j; /* column index */ 6698a62d963SHong Zhang for (row=0; row<bs; row++){ 6708a62d963SHong Zhang tmp[col] += PetscAbsScalar(*v); v++; 6718a62d963SHong Zhang } 6728a62d963SHong Zhang } 6738a62d963SHong Zhang jj++; 6748a62d963SHong Zhang } 6758a62d963SHong Zhang v = bmat->a; jj = bmat->j; 6768a62d963SHong Zhang for (i=0; i<bmat->nz; i++) { 6778a62d963SHong Zhang for (j=0; j<bs; j++){ 6788a62d963SHong Zhang col = bs*garray[*jj] + j; 6798a62d963SHong Zhang for (row=0; row<bs; row++){ 6808a62d963SHong Zhang tmp[col] += PetscAbsScalar(*v); v++; 6818a62d963SHong Zhang } 6828a62d963SHong Zhang } 6838a62d963SHong Zhang jj++; 6848a62d963SHong Zhang } 685d0f46423SBarry Smith ierr = MPI_Allreduce(tmp,tmp2,mat->cmap->N,MPIU_REAL,MPI_SUM,((PetscObject)mat)->comm);CHKERRQ(ierr); 6868a62d963SHong Zhang *nrm = 0.0; 687d0f46423SBarry Smith for (j=0; j<mat->cmap->N; j++) { 6888a62d963SHong Zhang if (tmp2[j] > *nrm) *nrm = tmp2[j]; 6898a62d963SHong Zhang } 690fca92195SBarry Smith ierr = PetscFree2(tmp,tmp2);CHKERRQ(ierr); 6918a62d963SHong Zhang } else if (type == NORM_INFINITY) { /* max row sum */ 692577dd1f9SKris Buschelman PetscReal *sums; 693cb9801acSJed Brown ierr = PetscMalloc(bs*sizeof(PetscReal),&sums);CHKERRQ(ierr); 6948a62d963SHong Zhang sum = 0.0; 6958a62d963SHong Zhang for (j=0; j<amat->mbs; j++) { 6968a62d963SHong Zhang for (row=0; row<bs; row++) sums[row] = 0.0; 6978a62d963SHong Zhang v = amat->a + bs2*amat->i[j]; 6988a62d963SHong Zhang nz = amat->i[j+1]-amat->i[j]; 6998a62d963SHong Zhang for (i=0; i<nz; i++) { 7008a62d963SHong Zhang for (col=0; col<bs; col++){ 7018a62d963SHong Zhang for (row=0; row<bs; row++){ 7028a62d963SHong Zhang sums[row] += PetscAbsScalar(*v); v++; 7038a62d963SHong Zhang } 7048a62d963SHong Zhang } 7058a62d963SHong Zhang } 7068a62d963SHong Zhang v = bmat->a + bs2*bmat->i[j]; 7078a62d963SHong Zhang nz = bmat->i[j+1]-bmat->i[j]; 7088a62d963SHong Zhang for (i=0; i<nz; i++) { 7098a62d963SHong Zhang for (col=0; col<bs; col++){ 7108a62d963SHong Zhang for (row=0; row<bs; row++){ 7118a62d963SHong Zhang sums[row] += PetscAbsScalar(*v); v++; 7128a62d963SHong Zhang } 7138a62d963SHong Zhang } 7148a62d963SHong Zhang } 7158a62d963SHong Zhang for (row=0; row<bs; row++){ 7168a62d963SHong Zhang if (sums[row] > sum) sum = sums[row]; 7178a62d963SHong Zhang } 7188a62d963SHong Zhang } 7197adad957SLisandro Dalcin ierr = MPI_Allreduce(&sum,nrm,1,MPIU_REAL,MPI_MAX,((PetscObject)mat)->comm);CHKERRQ(ierr); 720577dd1f9SKris Buschelman ierr = PetscFree(sums);CHKERRQ(ierr); 721e7e72b3dSBarry Smith } else SETERRQ(((PetscObject)mat)->comm,PETSC_ERR_SUP,"No support for this norm yet"); 722d64ed03dSBarry Smith } 7233a40ed3dSBarry Smith PetscFunctionReturn(0); 724d6de1c52SSatish Balay } 72557b952d6SSatish Balay 726fef45726SSatish Balay /* 727fef45726SSatish Balay Creates the hash table, and sets the table 728fef45726SSatish Balay This table is created only once. 729fef45726SSatish Balay If new entried need to be added to the matrix 730fef45726SSatish Balay then the hash table has to be destroyed and 731fef45726SSatish Balay recreated. 732fef45726SSatish Balay */ 7334a2ae208SSatish Balay #undef __FUNCT__ 7344a2ae208SSatish Balay #define __FUNCT__ "MatCreateHashTable_MPIBAIJ_Private" 735dfbe8321SBarry Smith PetscErrorCode MatCreateHashTable_MPIBAIJ_Private(Mat mat,PetscReal factor) 736596b8d2eSBarry Smith { 737596b8d2eSBarry Smith Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 738596b8d2eSBarry Smith Mat A = baij->A,B=baij->B; 739596b8d2eSBarry Smith Mat_SeqBAIJ *a=(Mat_SeqBAIJ *)A->data,*b=(Mat_SeqBAIJ *)B->data; 740b24ad042SBarry Smith PetscInt i,j,k,nz=a->nz+b->nz,h1,*ai=a->i,*aj=a->j,*bi=b->i,*bj=b->j; 7416849ba73SBarry Smith PetscErrorCode ierr; 742fca92195SBarry Smith PetscInt ht_size,bs2=baij->bs2,rstart=baij->rstartbs; 743899cda47SBarry Smith PetscInt cstart=baij->cstartbs,*garray=baij->garray,row,col,Nbs=baij->Nbs; 744b24ad042SBarry Smith PetscInt *HT,key; 7453eda8832SBarry Smith MatScalar **HD; 746329f5518SBarry Smith PetscReal tmp; 7476cf91177SBarry Smith #if defined(PETSC_USE_INFO) 748b24ad042SBarry Smith PetscInt ct=0,max=0; 7494a15367fSSatish Balay #endif 750fef45726SSatish Balay 751d64ed03dSBarry Smith PetscFunctionBegin; 752fca92195SBarry Smith if (baij->ht) PetscFunctionReturn(0); 753fef45726SSatish Balay 754fca92195SBarry Smith baij->ht_size = (PetscInt)(factor*nz); 755fca92195SBarry Smith ht_size = baij->ht_size; 7560bdbc534SSatish Balay 757fef45726SSatish Balay /* Allocate Memory for Hash Table */ 758fca92195SBarry Smith ierr = PetscMalloc2(ht_size,MatScalar*,&baij->hd,ht_size,PetscInt,&baij->ht);CHKERRQ(ierr); 759fca92195SBarry Smith ierr = PetscMemzero(baij->hd,ht_size*sizeof(MatScalar*));CHKERRQ(ierr); 760fca92195SBarry Smith ierr = PetscMemzero(baij->ht,ht_size*sizeof(PetscInt));CHKERRQ(ierr); 761b9e4cc15SSatish Balay HD = baij->hd; 762a07cd24cSSatish Balay HT = baij->ht; 763b9e4cc15SSatish Balay 764596b8d2eSBarry Smith /* Loop Over A */ 7650bdbc534SSatish Balay for (i=0; i<a->mbs; i++) { 766596b8d2eSBarry Smith for (j=ai[i]; j<ai[i+1]; j++) { 7670bdbc534SSatish Balay row = i+rstart; 7680bdbc534SSatish Balay col = aj[j]+cstart; 769596b8d2eSBarry Smith 770187ce0cbSSatish Balay key = row*Nbs + col + 1; 771fca92195SBarry Smith h1 = HASH(ht_size,key,tmp); 772fca92195SBarry Smith for (k=0; k<ht_size; k++){ 773fca92195SBarry Smith if (!HT[(h1+k)%ht_size]) { 774fca92195SBarry Smith HT[(h1+k)%ht_size] = key; 775fca92195SBarry Smith HD[(h1+k)%ht_size] = a->a + j*bs2; 776596b8d2eSBarry Smith break; 7776cf91177SBarry Smith #if defined(PETSC_USE_INFO) 778187ce0cbSSatish Balay } else { 779187ce0cbSSatish Balay ct++; 780187ce0cbSSatish Balay #endif 781596b8d2eSBarry Smith } 782187ce0cbSSatish Balay } 7836cf91177SBarry Smith #if defined(PETSC_USE_INFO) 784187ce0cbSSatish Balay if (k> max) max = k; 785187ce0cbSSatish Balay #endif 786596b8d2eSBarry Smith } 787596b8d2eSBarry Smith } 788596b8d2eSBarry Smith /* Loop Over B */ 7890bdbc534SSatish Balay for (i=0; i<b->mbs; i++) { 790596b8d2eSBarry Smith for (j=bi[i]; j<bi[i+1]; j++) { 7910bdbc534SSatish Balay row = i+rstart; 7920bdbc534SSatish Balay col = garray[bj[j]]; 793187ce0cbSSatish Balay key = row*Nbs + col + 1; 794fca92195SBarry Smith h1 = HASH(ht_size,key,tmp); 795fca92195SBarry Smith for (k=0; k<ht_size; k++){ 796fca92195SBarry Smith if (!HT[(h1+k)%ht_size]) { 797fca92195SBarry Smith HT[(h1+k)%ht_size] = key; 798fca92195SBarry Smith HD[(h1+k)%ht_size] = b->a + j*bs2; 799596b8d2eSBarry Smith break; 8006cf91177SBarry Smith #if defined(PETSC_USE_INFO) 801187ce0cbSSatish Balay } else { 802187ce0cbSSatish Balay ct++; 803187ce0cbSSatish Balay #endif 804596b8d2eSBarry Smith } 805187ce0cbSSatish Balay } 8066cf91177SBarry Smith #if defined(PETSC_USE_INFO) 807187ce0cbSSatish Balay if (k> max) max = k; 808187ce0cbSSatish Balay #endif 809596b8d2eSBarry Smith } 810596b8d2eSBarry Smith } 811596b8d2eSBarry Smith 812596b8d2eSBarry Smith /* Print Summary */ 8136cf91177SBarry Smith #if defined(PETSC_USE_INFO) 814fca92195SBarry Smith for (i=0,j=0; i<ht_size; i++) { 815596b8d2eSBarry Smith if (HT[i]) {j++;} 816c38d4ed2SBarry Smith } 8171e2582c4SBarry Smith ierr = PetscInfo2(mat,"Average Search = %5.2f,max search = %D\n",(!j)? 0.0:((PetscReal)(ct+j))/j,max);CHKERRQ(ierr); 818187ce0cbSSatish Balay #endif 8193a40ed3dSBarry Smith PetscFunctionReturn(0); 820596b8d2eSBarry Smith } 82157b952d6SSatish Balay 8224a2ae208SSatish Balay #undef __FUNCT__ 8234a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyBegin_MPIBAIJ" 824dfbe8321SBarry Smith PetscErrorCode MatAssemblyBegin_MPIBAIJ(Mat mat,MatAssemblyType mode) 825bbb85fb3SSatish Balay { 826bbb85fb3SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 827dfbe8321SBarry Smith PetscErrorCode ierr; 828b24ad042SBarry Smith PetscInt nstash,reallocs; 829bbb85fb3SSatish Balay InsertMode addv; 830bbb85fb3SSatish Balay 831bbb85fb3SSatish Balay PetscFunctionBegin; 832bbb85fb3SSatish Balay if (baij->donotstash) { 833bbb85fb3SSatish Balay PetscFunctionReturn(0); 834bbb85fb3SSatish Balay } 835bbb85fb3SSatish Balay 836bbb85fb3SSatish Balay /* make sure all processors are either in INSERTMODE or ADDMODE */ 8377adad957SLisandro Dalcin ierr = MPI_Allreduce(&mat->insertmode,&addv,1,MPI_INT,MPI_BOR,((PetscObject)mat)->comm);CHKERRQ(ierr); 838e7e72b3dSBarry Smith if (addv == (ADD_VALUES|INSERT_VALUES)) SETERRQ(((PetscObject)mat)->comm,PETSC_ERR_ARG_WRONGSTATE,"Some processors inserted others added"); 839bbb85fb3SSatish Balay mat->insertmode = addv; /* in case this processor had no cache */ 840bbb85fb3SSatish Balay 841d0f46423SBarry Smith ierr = MatStashScatterBegin_Private(mat,&mat->stash,mat->rmap->range);CHKERRQ(ierr); 8421e2582c4SBarry Smith ierr = MatStashScatterBegin_Private(mat,&mat->bstash,baij->rangebs);CHKERRQ(ierr); 8438798bf22SSatish Balay ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr); 8441e2582c4SBarry Smith ierr = PetscInfo2(mat,"Stash has %D entries,uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr); 84546680499SSatish Balay ierr = MatStashGetInfo_Private(&mat->bstash,&nstash,&reallocs);CHKERRQ(ierr); 8461e2582c4SBarry Smith ierr = PetscInfo2(mat,"Block-Stash has %D entries, uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr); 847bbb85fb3SSatish Balay PetscFunctionReturn(0); 848bbb85fb3SSatish Balay } 849bbb85fb3SSatish Balay 8504a2ae208SSatish Balay #undef __FUNCT__ 8514a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyEnd_MPIBAIJ" 852dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_MPIBAIJ(Mat mat,MatAssemblyType mode) 853bbb85fb3SSatish Balay { 854bbb85fb3SSatish Balay Mat_MPIBAIJ *baij=(Mat_MPIBAIJ*)mat->data; 85591c97fd4SSatish Balay Mat_SeqBAIJ *a=(Mat_SeqBAIJ*)baij->A->data; 8566849ba73SBarry Smith PetscErrorCode ierr; 857b24ad042SBarry Smith PetscInt i,j,rstart,ncols,flg,bs2=baij->bs2; 858e44c0bd4SBarry Smith PetscInt *row,*col; 859e44c0bd4SBarry Smith PetscTruth r1,r2,r3,other_disassembled; 8603eda8832SBarry Smith MatScalar *val; 861bbb85fb3SSatish Balay InsertMode addv = mat->insertmode; 862b24ad042SBarry Smith PetscMPIInt n; 863bbb85fb3SSatish Balay 86491c97fd4SSatish Balay /* do not use 'b=(Mat_SeqBAIJ*)baij->B->data' as B can be reset in disassembly */ 865bbb85fb3SSatish Balay PetscFunctionBegin; 866bbb85fb3SSatish Balay if (!baij->donotstash) { 867a2d1c673SSatish Balay while (1) { 8688798bf22SSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 869a2d1c673SSatish Balay if (!flg) break; 870a2d1c673SSatish Balay 871bbb85fb3SSatish Balay for (i=0; i<n;) { 872bbb85fb3SSatish Balay /* Now identify the consecutive vals belonging to the same row */ 873bbb85fb3SSatish Balay for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; } 874bbb85fb3SSatish Balay if (j < n) ncols = j-i; 875bbb85fb3SSatish Balay else ncols = n-i; 876bbb85fb3SSatish Balay /* Now assemble all these values with a single function call */ 87797e5c40aSBarry Smith ierr = MatSetValues_MPIBAIJ(mat,1,row+i,ncols,col+i,val+i,addv);CHKERRQ(ierr); 878bbb85fb3SSatish Balay i = j; 879bbb85fb3SSatish Balay } 880bbb85fb3SSatish Balay } 8818798bf22SSatish Balay ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr); 882a2d1c673SSatish Balay /* Now process the block-stash. Since the values are stashed column-oriented, 883a2d1c673SSatish Balay set the roworiented flag to column oriented, and after MatSetValues() 884a2d1c673SSatish Balay restore the original flags */ 885a2d1c673SSatish Balay r1 = baij->roworiented; 886a2d1c673SSatish Balay r2 = a->roworiented; 88791c97fd4SSatish Balay r3 = ((Mat_SeqBAIJ*)baij->B->data)->roworiented; 8887c922b88SBarry Smith baij->roworiented = PETSC_FALSE; 8897c922b88SBarry Smith a->roworiented = PETSC_FALSE; 89091c97fd4SSatish Balay (((Mat_SeqBAIJ*)baij->B->data))->roworiented = PETSC_FALSE; /* b->roworiented */ 891a2d1c673SSatish Balay while (1) { 8928798bf22SSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->bstash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 893a2d1c673SSatish Balay if (!flg) break; 894a2d1c673SSatish Balay 895a2d1c673SSatish Balay for (i=0; i<n;) { 896a2d1c673SSatish Balay /* Now identify the consecutive vals belonging to the same row */ 897a2d1c673SSatish Balay for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; } 898a2d1c673SSatish Balay if (j < n) ncols = j-i; 899a2d1c673SSatish Balay else ncols = n-i; 90097e5c40aSBarry Smith ierr = MatSetValuesBlocked_MPIBAIJ(mat,1,row+i,ncols,col+i,val+i*bs2,addv);CHKERRQ(ierr); 901a2d1c673SSatish Balay i = j; 902a2d1c673SSatish Balay } 903a2d1c673SSatish Balay } 9048798bf22SSatish Balay ierr = MatStashScatterEnd_Private(&mat->bstash);CHKERRQ(ierr); 905a2d1c673SSatish Balay baij->roworiented = r1; 906a2d1c673SSatish Balay a->roworiented = r2; 90791c97fd4SSatish Balay ((Mat_SeqBAIJ*)baij->B->data)->roworiented = r3; /* b->roworiented */ 908bbb85fb3SSatish Balay } 909bbb85fb3SSatish Balay 910bbb85fb3SSatish Balay ierr = MatAssemblyBegin(baij->A,mode);CHKERRQ(ierr); 911bbb85fb3SSatish Balay ierr = MatAssemblyEnd(baij->A,mode);CHKERRQ(ierr); 912bbb85fb3SSatish Balay 913bbb85fb3SSatish Balay /* determine if any processor has disassembled, if so we must 914bbb85fb3SSatish Balay also disassemble ourselfs, in order that we may reassemble. */ 915bbb85fb3SSatish Balay /* 916bbb85fb3SSatish Balay if nonzero structure of submatrix B cannot change then we know that 917bbb85fb3SSatish Balay no processor disassembled thus we can skip this stuff 918bbb85fb3SSatish Balay */ 919bbb85fb3SSatish Balay if (!((Mat_SeqBAIJ*)baij->B->data)->nonew) { 9207adad957SLisandro Dalcin ierr = MPI_Allreduce(&mat->was_assembled,&other_disassembled,1,MPI_INT,MPI_PROD,((PetscObject)mat)->comm);CHKERRQ(ierr); 921bbb85fb3SSatish Balay if (mat->was_assembled && !other_disassembled) { 922bbb85fb3SSatish Balay ierr = DisAssemble_MPIBAIJ(mat);CHKERRQ(ierr); 923bbb85fb3SSatish Balay } 924bbb85fb3SSatish Balay } 925bbb85fb3SSatish Balay 926bbb85fb3SSatish Balay if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) { 927bbb85fb3SSatish Balay ierr = MatSetUpMultiply_MPIBAIJ(mat);CHKERRQ(ierr); 928bbb85fb3SSatish Balay } 92991c97fd4SSatish Balay ((Mat_SeqBAIJ*)baij->B->data)->compressedrow.use = PETSC_TRUE; /* b->compressedrow.use */ 930bbb85fb3SSatish Balay ierr = MatAssemblyBegin(baij->B,mode);CHKERRQ(ierr); 931bbb85fb3SSatish Balay ierr = MatAssemblyEnd(baij->B,mode);CHKERRQ(ierr); 932bbb85fb3SSatish Balay 9336cf91177SBarry Smith #if defined(PETSC_USE_INFO) 934bbb85fb3SSatish Balay if (baij->ht && mode== MAT_FINAL_ASSEMBLY) { 9351e2582c4SBarry Smith ierr = PetscInfo1(mat,"Average Hash Table Search in MatSetValues = %5.2f\n",((PetscReal)baij->ht_total_ct)/baij->ht_insert_ct);CHKERRQ(ierr); 936bbb85fb3SSatish Balay baij->ht_total_ct = 0; 937bbb85fb3SSatish Balay baij->ht_insert_ct = 0; 938bbb85fb3SSatish Balay } 939bbb85fb3SSatish Balay #endif 940bbb85fb3SSatish Balay if (baij->ht_flag && !baij->ht && mode == MAT_FINAL_ASSEMBLY) { 941bbb85fb3SSatish Balay ierr = MatCreateHashTable_MPIBAIJ_Private(mat,baij->ht_fact);CHKERRQ(ierr); 942bbb85fb3SSatish Balay mat->ops->setvalues = MatSetValues_MPIBAIJ_HT; 943bbb85fb3SSatish Balay mat->ops->setvaluesblocked = MatSetValuesBlocked_MPIBAIJ_HT; 944bbb85fb3SSatish Balay } 945bbb85fb3SSatish Balay 946fca92195SBarry Smith ierr = PetscFree2(baij->rowvalues,baij->rowindices);CHKERRQ(ierr); 947606d414cSSatish Balay baij->rowvalues = 0; 948bbb85fb3SSatish Balay PetscFunctionReturn(0); 949bbb85fb3SSatish Balay } 95057b952d6SSatish Balay 9514a2ae208SSatish Balay #undef __FUNCT__ 9524a2ae208SSatish Balay #define __FUNCT__ "MatView_MPIBAIJ_ASCIIorDraworSocket" 9536849ba73SBarry Smith static PetscErrorCode MatView_MPIBAIJ_ASCIIorDraworSocket(Mat mat,PetscViewer viewer) 95457b952d6SSatish Balay { 95557b952d6SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 956dfbe8321SBarry Smith PetscErrorCode ierr; 957b24ad042SBarry Smith PetscMPIInt size = baij->size,rank = baij->rank; 958d0f46423SBarry Smith PetscInt bs = mat->rmap->bs; 95932077d6dSBarry Smith PetscTruth iascii,isdraw; 960b0a32e0cSBarry Smith PetscViewer sviewer; 961f3ef73ceSBarry Smith PetscViewerFormat format; 96257b952d6SSatish Balay 963d64ed03dSBarry Smith PetscFunctionBegin; 96432077d6dSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&iascii);CHKERRQ(ierr); 965fb9695e5SSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr); 96632077d6dSBarry Smith if (iascii) { 967b0a32e0cSBarry Smith ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr); 968456192e2SBarry Smith if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 9694e220ebcSLois Curfman McInnes MatInfo info; 9707adad957SLisandro Dalcin ierr = MPI_Comm_rank(((PetscObject)mat)->comm,&rank);CHKERRQ(ierr); 971d41123aaSBarry Smith ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr); 97277431f27SBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Local rows %D nz %D nz alloced %D bs %D mem %D\n", 973d0f46423SBarry Smith rank,mat->rmap->N,(PetscInt)info.nz_used*bs,(PetscInt)info.nz_allocated*bs, 974d0f46423SBarry Smith mat->rmap->bs,(PetscInt)info.memory);CHKERRQ(ierr); 975d132466eSBarry Smith ierr = MatGetInfo(baij->A,MAT_LOCAL,&info);CHKERRQ(ierr); 97677431f27SBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] on-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used*bs);CHKERRQ(ierr); 977d132466eSBarry Smith ierr = MatGetInfo(baij->B,MAT_LOCAL,&info);CHKERRQ(ierr); 97877431f27SBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] off-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used*bs);CHKERRQ(ierr); 979b0a32e0cSBarry Smith ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 98007d81ca4SBarry Smith ierr = PetscViewerASCIIPrintf(viewer,"Information on VecScatter used in matrix-vector product: \n");CHKERRQ(ierr); 98157b952d6SSatish Balay ierr = VecScatterView(baij->Mvctx,viewer);CHKERRQ(ierr); 9823a40ed3dSBarry Smith PetscFunctionReturn(0); 983fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_INFO) { 98477431f27SBarry Smith ierr = PetscViewerASCIIPrintf(viewer," block size is %D\n",bs);CHKERRQ(ierr); 9853a40ed3dSBarry Smith PetscFunctionReturn(0); 98604929863SHong Zhang } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) { 98704929863SHong Zhang PetscFunctionReturn(0); 98857b952d6SSatish Balay } 98957b952d6SSatish Balay } 99057b952d6SSatish Balay 9910f5bd95cSBarry Smith if (isdraw) { 992b0a32e0cSBarry Smith PetscDraw draw; 99357b952d6SSatish Balay PetscTruth isnull; 994b0a32e0cSBarry Smith ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr); 995b0a32e0cSBarry Smith ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); if (isnull) PetscFunctionReturn(0); 99657b952d6SSatish Balay } 99757b952d6SSatish Balay 99857b952d6SSatish Balay if (size == 1) { 9997adad957SLisandro Dalcin ierr = PetscObjectSetName((PetscObject)baij->A,((PetscObject)mat)->name);CHKERRQ(ierr); 100057b952d6SSatish Balay ierr = MatView(baij->A,viewer);CHKERRQ(ierr); 1001d64ed03dSBarry Smith } else { 100257b952d6SSatish Balay /* assemble the entire matrix onto first processor. */ 100357b952d6SSatish Balay Mat A; 100457b952d6SSatish Balay Mat_SeqBAIJ *Aloc; 1005d0f46423SBarry Smith PetscInt M = mat->rmap->N,N = mat->cmap->N,*ai,*aj,col,i,j,k,*rvals,mbs = baij->mbs; 10063eda8832SBarry Smith MatScalar *a; 100757b952d6SSatish Balay 1008f204ca49SKris Buschelman /* Here we are creating a temporary matrix, so will assume MPIBAIJ is acceptable */ 1009f204ca49SKris Buschelman /* Perhaps this should be the type of mat? */ 10107adad957SLisandro Dalcin ierr = MatCreate(((PetscObject)mat)->comm,&A);CHKERRQ(ierr); 101157b952d6SSatish Balay if (!rank) { 1012f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,M,N,M,N);CHKERRQ(ierr); 1013d64ed03dSBarry Smith } else { 1014f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,0,0,M,N);CHKERRQ(ierr); 101557b952d6SSatish Balay } 1016f204ca49SKris Buschelman ierr = MatSetType(A,MATMPIBAIJ);CHKERRQ(ierr); 1017d0f46423SBarry Smith ierr = MatMPIBAIJSetPreallocation(A,mat->rmap->bs,0,PETSC_NULL,0,PETSC_NULL);CHKERRQ(ierr); 101852e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,A);CHKERRQ(ierr); 101957b952d6SSatish Balay 102057b952d6SSatish Balay /* copy over the A part */ 102157b952d6SSatish Balay Aloc = (Mat_SeqBAIJ*)baij->A->data; 102257b952d6SSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 1023b24ad042SBarry Smith ierr = PetscMalloc(bs*sizeof(PetscInt),&rvals);CHKERRQ(ierr); 102457b952d6SSatish Balay 102557b952d6SSatish Balay for (i=0; i<mbs; i++) { 1026899cda47SBarry Smith rvals[0] = bs*(baij->rstartbs + i); 102757b952d6SSatish Balay for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; } 102857b952d6SSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 1029899cda47SBarry Smith col = (baij->cstartbs+aj[j])*bs; 103057b952d6SSatish Balay for (k=0; k<bs; k++) { 103197e5c40aSBarry Smith ierr = MatSetValues_MPIBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 1032cee3aa6bSSatish Balay col++; a += bs; 103357b952d6SSatish Balay } 103457b952d6SSatish Balay } 103557b952d6SSatish Balay } 103657b952d6SSatish Balay /* copy over the B part */ 103757b952d6SSatish Balay Aloc = (Mat_SeqBAIJ*)baij->B->data; 103857b952d6SSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 103957b952d6SSatish Balay for (i=0; i<mbs; i++) { 1040899cda47SBarry Smith rvals[0] = bs*(baij->rstartbs + i); 104157b952d6SSatish Balay for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; } 104257b952d6SSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 104357b952d6SSatish Balay col = baij->garray[aj[j]]*bs; 104457b952d6SSatish Balay for (k=0; k<bs; k++) { 104597e5c40aSBarry Smith ierr = MatSetValues_MPIBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 1046cee3aa6bSSatish Balay col++; a += bs; 104757b952d6SSatish Balay } 104857b952d6SSatish Balay } 104957b952d6SSatish Balay } 1050606d414cSSatish Balay ierr = PetscFree(rvals);CHKERRQ(ierr); 10516d4a8577SBarry Smith ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 10526d4a8577SBarry Smith ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 105355843e3eSBarry Smith /* 105455843e3eSBarry Smith Everyone has to call to draw the matrix since the graphics waits are 1055b0a32e0cSBarry Smith synchronized across all processors that share the PetscDraw object 105655843e3eSBarry Smith */ 1057b0a32e0cSBarry Smith ierr = PetscViewerGetSingleton(viewer,&sviewer);CHKERRQ(ierr); 1058f14a1c24SBarry Smith if (!rank) { 10597adad957SLisandro Dalcin ierr = PetscObjectSetName((PetscObject)((Mat_MPIBAIJ*)(A->data))->A,((PetscObject)mat)->name);CHKERRQ(ierr); 10606831982aSBarry Smith ierr = MatView(((Mat_MPIBAIJ*)(A->data))->A,sviewer);CHKERRQ(ierr); 106157b952d6SSatish Balay } 1062b0a32e0cSBarry Smith ierr = PetscViewerRestoreSingleton(viewer,&sviewer);CHKERRQ(ierr); 106357b952d6SSatish Balay ierr = MatDestroy(A);CHKERRQ(ierr); 106457b952d6SSatish Balay } 10653a40ed3dSBarry Smith PetscFunctionReturn(0); 106657b952d6SSatish Balay } 106757b952d6SSatish Balay 10684a2ae208SSatish Balay #undef __FUNCT__ 10694a2ae208SSatish Balay #define __FUNCT__ "MatView_MPIBAIJ" 1070dfbe8321SBarry Smith PetscErrorCode MatView_MPIBAIJ(Mat mat,PetscViewer viewer) 107157b952d6SSatish Balay { 1072dfbe8321SBarry Smith PetscErrorCode ierr; 107332077d6dSBarry Smith PetscTruth iascii,isdraw,issocket,isbinary; 107457b952d6SSatish Balay 1075d64ed03dSBarry Smith PetscFunctionBegin; 107632077d6dSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&iascii);CHKERRQ(ierr); 1077fb9695e5SSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr); 1078b0a32e0cSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_SOCKET,&issocket);CHKERRQ(ierr); 1079fb9695e5SSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_BINARY,&isbinary);CHKERRQ(ierr); 108032077d6dSBarry Smith if (iascii || isdraw || issocket || isbinary) { 10817b2a1423SBarry Smith ierr = MatView_MPIBAIJ_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr); 10825cd90555SBarry Smith } else { 108365e19b50SBarry Smith SETERRQ1(((PetscObject)mat)->comm,PETSC_ERR_SUP,"Viewer type %s not supported by MPIBAIJ matrices",((PetscObject)viewer)->type_name); 108457b952d6SSatish Balay } 10853a40ed3dSBarry Smith PetscFunctionReturn(0); 108657b952d6SSatish Balay } 108757b952d6SSatish Balay 10884a2ae208SSatish Balay #undef __FUNCT__ 10894a2ae208SSatish Balay #define __FUNCT__ "MatDestroy_MPIBAIJ" 1090dfbe8321SBarry Smith PetscErrorCode MatDestroy_MPIBAIJ(Mat mat) 109179bdfe76SSatish Balay { 109279bdfe76SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 1093dfbe8321SBarry Smith PetscErrorCode ierr; 109479bdfe76SSatish Balay 1095d64ed03dSBarry Smith PetscFunctionBegin; 1096aa482453SBarry Smith #if defined(PETSC_USE_LOG) 1097d0f46423SBarry Smith PetscLogObjectState((PetscObject)mat,"Rows=%D,Cols=%D",mat->rmap->N,mat->cmap->N); 109879bdfe76SSatish Balay #endif 10998798bf22SSatish Balay ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr); 11008798bf22SSatish Balay ierr = MatStashDestroy_Private(&mat->bstash);CHKERRQ(ierr); 110179bdfe76SSatish Balay ierr = MatDestroy(baij->A);CHKERRQ(ierr); 110279bdfe76SSatish Balay ierr = MatDestroy(baij->B);CHKERRQ(ierr); 1103aa482453SBarry Smith #if defined (PETSC_USE_CTABLE) 11049c666560SBarry Smith if (baij->colmap) {ierr = PetscTableDestroy(baij->colmap);CHKERRQ(ierr);} 110548e59246SSatish Balay #else 110605b42c5fSBarry Smith ierr = PetscFree(baij->colmap);CHKERRQ(ierr); 110748e59246SSatish Balay #endif 110805b42c5fSBarry Smith ierr = PetscFree(baij->garray);CHKERRQ(ierr); 1109606d414cSSatish Balay if (baij->lvec) {ierr = VecDestroy(baij->lvec);CHKERRQ(ierr);} 1110606d414cSSatish Balay if (baij->Mvctx) {ierr = VecScatterDestroy(baij->Mvctx);CHKERRQ(ierr);} 1111fca92195SBarry Smith ierr = PetscFree2(baij->rowvalues,baij->rowindices);CHKERRQ(ierr); 111205b42c5fSBarry Smith ierr = PetscFree(baij->barray);CHKERRQ(ierr); 1113fca92195SBarry Smith ierr = PetscFree2(baij->hd,baij->ht);CHKERRQ(ierr); 1114899cda47SBarry Smith ierr = PetscFree(baij->rangebs);CHKERRQ(ierr); 1115606d414cSSatish Balay ierr = PetscFree(baij);CHKERRQ(ierr); 1116901853e0SKris Buschelman 1117dbd8c25aSHong Zhang ierr = PetscObjectChangeTypeName((PetscObject)mat,0);CHKERRQ(ierr); 1118901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatStoreValues_C","",PETSC_NULL);CHKERRQ(ierr); 1119901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatRetrieveValues_C","",PETSC_NULL);CHKERRQ(ierr); 1120901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatGetDiagonalBlock_C","",PETSC_NULL);CHKERRQ(ierr); 1121901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPIBAIJSetPreallocation_C","",PETSC_NULL);CHKERRQ(ierr); 1122aac34f13SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPIBAIJSetPreallocationCSR_C","",PETSC_NULL);CHKERRQ(ierr); 1123901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDiagonalScaleLocal_C","",PETSC_NULL);CHKERRQ(ierr); 1124901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatSetHashTableFactor_C","",PETSC_NULL);CHKERRQ(ierr); 11253a40ed3dSBarry Smith PetscFunctionReturn(0); 112679bdfe76SSatish Balay } 112779bdfe76SSatish Balay 11284a2ae208SSatish Balay #undef __FUNCT__ 11294a2ae208SSatish Balay #define __FUNCT__ "MatMult_MPIBAIJ" 1130dfbe8321SBarry Smith PetscErrorCode MatMult_MPIBAIJ(Mat A,Vec xx,Vec yy) 1131cee3aa6bSSatish Balay { 1132cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1133dfbe8321SBarry Smith PetscErrorCode ierr; 1134b24ad042SBarry Smith PetscInt nt; 1135cee3aa6bSSatish Balay 1136d64ed03dSBarry Smith PetscFunctionBegin; 1137e1311b90SBarry Smith ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr); 1138e7e72b3dSBarry Smith if (nt != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx"); 1139e1311b90SBarry Smith ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr); 1140e7e72b3dSBarry Smith if (nt != A->rmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible parition of A and yy"); 1141ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1142f830108cSBarry Smith ierr = (*a->A->ops->mult)(a->A,xx,yy);CHKERRQ(ierr); 1143ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1144f830108cSBarry Smith ierr = (*a->B->ops->multadd)(a->B,a->lvec,yy,yy);CHKERRQ(ierr); 11453a40ed3dSBarry Smith PetscFunctionReturn(0); 1146cee3aa6bSSatish Balay } 1147cee3aa6bSSatish Balay 11484a2ae208SSatish Balay #undef __FUNCT__ 11494a2ae208SSatish Balay #define __FUNCT__ "MatMultAdd_MPIBAIJ" 1150dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPIBAIJ(Mat A,Vec xx,Vec yy,Vec zz) 1151cee3aa6bSSatish Balay { 1152cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1153dfbe8321SBarry Smith PetscErrorCode ierr; 1154d64ed03dSBarry Smith 1155d64ed03dSBarry Smith PetscFunctionBegin; 1156ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1157f830108cSBarry Smith ierr = (*a->A->ops->multadd)(a->A,xx,yy,zz);CHKERRQ(ierr); 1158ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1159f830108cSBarry Smith ierr = (*a->B->ops->multadd)(a->B,a->lvec,zz,zz);CHKERRQ(ierr); 11603a40ed3dSBarry Smith PetscFunctionReturn(0); 1161cee3aa6bSSatish Balay } 1162cee3aa6bSSatish Balay 11634a2ae208SSatish Balay #undef __FUNCT__ 11644a2ae208SSatish Balay #define __FUNCT__ "MatMultTranspose_MPIBAIJ" 1165dfbe8321SBarry Smith PetscErrorCode MatMultTranspose_MPIBAIJ(Mat A,Vec xx,Vec yy) 1166cee3aa6bSSatish Balay { 1167cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1168dfbe8321SBarry Smith PetscErrorCode ierr; 1169a5ff213dSBarry Smith PetscTruth merged; 1170cee3aa6bSSatish Balay 1171d64ed03dSBarry Smith PetscFunctionBegin; 1172a5ff213dSBarry Smith ierr = VecScatterGetMerged(a->Mvctx,&merged);CHKERRQ(ierr); 1173cee3aa6bSSatish Balay /* do nondiagonal part */ 11747c922b88SBarry Smith ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr); 1175a5ff213dSBarry Smith if (!merged) { 1176cee3aa6bSSatish Balay /* send it on its way */ 1177ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 1178cee3aa6bSSatish Balay /* do local part */ 11797c922b88SBarry Smith ierr = (*a->A->ops->multtranspose)(a->A,xx,yy);CHKERRQ(ierr); 1180cee3aa6bSSatish Balay /* receive remote parts: note this assumes the values are not actually */ 1181a5ff213dSBarry Smith /* inserted in yy until the next line */ 1182ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 1183a5ff213dSBarry Smith } else { 1184a5ff213dSBarry Smith /* do local part */ 1185a5ff213dSBarry Smith ierr = (*a->A->ops->multtranspose)(a->A,xx,yy);CHKERRQ(ierr); 1186a5ff213dSBarry Smith /* send it on its way */ 1187ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 1188a5ff213dSBarry Smith /* values actually were received in the Begin() but we need to call this nop */ 1189ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 1190a5ff213dSBarry Smith } 11913a40ed3dSBarry Smith PetscFunctionReturn(0); 1192cee3aa6bSSatish Balay } 1193cee3aa6bSSatish Balay 11944a2ae208SSatish Balay #undef __FUNCT__ 11954a2ae208SSatish Balay #define __FUNCT__ "MatMultTransposeAdd_MPIBAIJ" 1196dfbe8321SBarry Smith PetscErrorCode MatMultTransposeAdd_MPIBAIJ(Mat A,Vec xx,Vec yy,Vec zz) 1197cee3aa6bSSatish Balay { 1198cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1199dfbe8321SBarry Smith PetscErrorCode ierr; 1200cee3aa6bSSatish Balay 1201d64ed03dSBarry Smith PetscFunctionBegin; 1202cee3aa6bSSatish Balay /* do nondiagonal part */ 12037c922b88SBarry Smith ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr); 1204cee3aa6bSSatish Balay /* send it on its way */ 1205ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 1206cee3aa6bSSatish Balay /* do local part */ 12077c922b88SBarry Smith ierr = (*a->A->ops->multtransposeadd)(a->A,xx,yy,zz);CHKERRQ(ierr); 1208cee3aa6bSSatish Balay /* receive remote parts: note this assumes the values are not actually */ 1209cee3aa6bSSatish Balay /* inserted in yy until the next line, which is true for my implementation*/ 1210cee3aa6bSSatish Balay /* but is not perhaps always true. */ 1211ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 12123a40ed3dSBarry Smith PetscFunctionReturn(0); 1213cee3aa6bSSatish Balay } 1214cee3aa6bSSatish Balay 1215cee3aa6bSSatish Balay /* 1216cee3aa6bSSatish Balay This only works correctly for square matrices where the subblock A->A is the 1217cee3aa6bSSatish Balay diagonal block 1218cee3aa6bSSatish Balay */ 12194a2ae208SSatish Balay #undef __FUNCT__ 12204a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonal_MPIBAIJ" 1221dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_MPIBAIJ(Mat A,Vec v) 1222cee3aa6bSSatish Balay { 1223cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1224dfbe8321SBarry Smith PetscErrorCode ierr; 1225d64ed03dSBarry Smith 1226d64ed03dSBarry Smith PetscFunctionBegin; 1227e32f2f54SBarry Smith if (A->rmap->N != A->cmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block"); 12283a40ed3dSBarry Smith ierr = MatGetDiagonal(a->A,v);CHKERRQ(ierr); 12293a40ed3dSBarry Smith PetscFunctionReturn(0); 1230cee3aa6bSSatish Balay } 1231cee3aa6bSSatish Balay 12324a2ae208SSatish Balay #undef __FUNCT__ 12334a2ae208SSatish Balay #define __FUNCT__ "MatScale_MPIBAIJ" 1234f4df32b1SMatthew Knepley PetscErrorCode MatScale_MPIBAIJ(Mat A,PetscScalar aa) 1235cee3aa6bSSatish Balay { 1236cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1237dfbe8321SBarry Smith PetscErrorCode ierr; 1238d64ed03dSBarry Smith 1239d64ed03dSBarry Smith PetscFunctionBegin; 1240f4df32b1SMatthew Knepley ierr = MatScale(a->A,aa);CHKERRQ(ierr); 1241f4df32b1SMatthew Knepley ierr = MatScale(a->B,aa);CHKERRQ(ierr); 12423a40ed3dSBarry Smith PetscFunctionReturn(0); 1243cee3aa6bSSatish Balay } 1244026e39d0SSatish Balay 12454a2ae208SSatish Balay #undef __FUNCT__ 12464a2ae208SSatish Balay #define __FUNCT__ "MatGetRow_MPIBAIJ" 1247b24ad042SBarry Smith PetscErrorCode MatGetRow_MPIBAIJ(Mat matin,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 1248acdf5bf4SSatish Balay { 1249acdf5bf4SSatish Balay Mat_MPIBAIJ *mat = (Mat_MPIBAIJ*)matin->data; 125087828ca2SBarry Smith PetscScalar *vworkA,*vworkB,**pvA,**pvB,*v_p; 12516849ba73SBarry Smith PetscErrorCode ierr; 1252d0f46423SBarry Smith PetscInt bs = matin->rmap->bs,bs2 = mat->bs2,i,*cworkA,*cworkB,**pcA,**pcB; 1253d0f46423SBarry Smith PetscInt nztot,nzA,nzB,lrow,brstart = matin->rmap->rstart,brend = matin->rmap->rend; 1254899cda47SBarry Smith PetscInt *cmap,*idx_p,cstart = mat->cstartbs; 1255acdf5bf4SSatish Balay 1256d64ed03dSBarry Smith PetscFunctionBegin; 1257e7e72b3dSBarry Smith if (row < brstart || row >= brend) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local rows"); 1258e32f2f54SBarry Smith if (mat->getrowactive) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Already active"); 1259acdf5bf4SSatish Balay mat->getrowactive = PETSC_TRUE; 1260acdf5bf4SSatish Balay 1261acdf5bf4SSatish Balay if (!mat->rowvalues && (idx || v)) { 1262acdf5bf4SSatish Balay /* 1263acdf5bf4SSatish Balay allocate enough space to hold information from the longest row. 1264acdf5bf4SSatish Balay */ 1265acdf5bf4SSatish Balay Mat_SeqBAIJ *Aa = (Mat_SeqBAIJ*)mat->A->data,*Ba = (Mat_SeqBAIJ*)mat->B->data; 1266b24ad042SBarry Smith PetscInt max = 1,mbs = mat->mbs,tmp; 1267bd16c2feSSatish Balay for (i=0; i<mbs; i++) { 1268acdf5bf4SSatish Balay tmp = Aa->i[i+1] - Aa->i[i] + Ba->i[i+1] - Ba->i[i]; 1269acdf5bf4SSatish Balay if (max < tmp) { max = tmp; } 1270acdf5bf4SSatish Balay } 1271fca92195SBarry Smith ierr = PetscMalloc2(max*bs2,PetscScalar,&mat->rowvalues,max*bs2,PetscInt,&mat->rowindices);CHKERRQ(ierr); 1272acdf5bf4SSatish Balay } 1273d9d09a02SSatish Balay lrow = row - brstart; 1274acdf5bf4SSatish Balay 1275acdf5bf4SSatish Balay pvA = &vworkA; pcA = &cworkA; pvB = &vworkB; pcB = &cworkB; 1276acdf5bf4SSatish Balay if (!v) {pvA = 0; pvB = 0;} 1277acdf5bf4SSatish Balay if (!idx) {pcA = 0; if (!v) pcB = 0;} 1278f830108cSBarry Smith ierr = (*mat->A->ops->getrow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr); 1279f830108cSBarry Smith ierr = (*mat->B->ops->getrow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr); 1280acdf5bf4SSatish Balay nztot = nzA + nzB; 1281acdf5bf4SSatish Balay 1282acdf5bf4SSatish Balay cmap = mat->garray; 1283acdf5bf4SSatish Balay if (v || idx) { 1284acdf5bf4SSatish Balay if (nztot) { 1285acdf5bf4SSatish Balay /* Sort by increasing column numbers, assuming A and B already sorted */ 1286b24ad042SBarry Smith PetscInt imark = -1; 1287acdf5bf4SSatish Balay if (v) { 1288acdf5bf4SSatish Balay *v = v_p = mat->rowvalues; 1289acdf5bf4SSatish Balay for (i=0; i<nzB; i++) { 1290d9d09a02SSatish Balay if (cmap[cworkB[i]/bs] < cstart) v_p[i] = vworkB[i]; 1291acdf5bf4SSatish Balay else break; 1292acdf5bf4SSatish Balay } 1293acdf5bf4SSatish Balay imark = i; 1294acdf5bf4SSatish Balay for (i=0; i<nzA; i++) v_p[imark+i] = vworkA[i]; 1295acdf5bf4SSatish Balay for (i=imark; i<nzB; i++) v_p[nzA+i] = vworkB[i]; 1296acdf5bf4SSatish Balay } 1297acdf5bf4SSatish Balay if (idx) { 1298acdf5bf4SSatish Balay *idx = idx_p = mat->rowindices; 1299acdf5bf4SSatish Balay if (imark > -1) { 1300acdf5bf4SSatish Balay for (i=0; i<imark; i++) { 1301bd16c2feSSatish Balay idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs; 1302acdf5bf4SSatish Balay } 1303acdf5bf4SSatish Balay } else { 1304acdf5bf4SSatish Balay for (i=0; i<nzB; i++) { 1305d9d09a02SSatish Balay if (cmap[cworkB[i]/bs] < cstart) 1306d9d09a02SSatish Balay idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ; 1307acdf5bf4SSatish Balay else break; 1308acdf5bf4SSatish Balay } 1309acdf5bf4SSatish Balay imark = i; 1310acdf5bf4SSatish Balay } 1311d9d09a02SSatish Balay for (i=0; i<nzA; i++) idx_p[imark+i] = cstart*bs + cworkA[i]; 1312d9d09a02SSatish Balay for (i=imark; i<nzB; i++) idx_p[nzA+i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ; 1313acdf5bf4SSatish Balay } 1314d64ed03dSBarry Smith } else { 1315d212a18eSSatish Balay if (idx) *idx = 0; 1316d212a18eSSatish Balay if (v) *v = 0; 1317d212a18eSSatish Balay } 1318acdf5bf4SSatish Balay } 1319acdf5bf4SSatish Balay *nz = nztot; 1320f830108cSBarry Smith ierr = (*mat->A->ops->restorerow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr); 1321f830108cSBarry Smith ierr = (*mat->B->ops->restorerow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr); 13223a40ed3dSBarry Smith PetscFunctionReturn(0); 1323acdf5bf4SSatish Balay } 1324acdf5bf4SSatish Balay 13254a2ae208SSatish Balay #undef __FUNCT__ 13264a2ae208SSatish Balay #define __FUNCT__ "MatRestoreRow_MPIBAIJ" 1327b24ad042SBarry Smith PetscErrorCode MatRestoreRow_MPIBAIJ(Mat mat,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 1328acdf5bf4SSatish Balay { 1329acdf5bf4SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 1330d64ed03dSBarry Smith 1331d64ed03dSBarry Smith PetscFunctionBegin; 1332e7e72b3dSBarry Smith if (!baij->getrowactive) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"MatGetRow not called"); 1333acdf5bf4SSatish Balay baij->getrowactive = PETSC_FALSE; 13343a40ed3dSBarry Smith PetscFunctionReturn(0); 1335acdf5bf4SSatish Balay } 1336acdf5bf4SSatish Balay 13374a2ae208SSatish Balay #undef __FUNCT__ 13384a2ae208SSatish Balay #define __FUNCT__ "MatZeroEntries_MPIBAIJ" 1339dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_MPIBAIJ(Mat A) 134058667388SSatish Balay { 134158667388SSatish Balay Mat_MPIBAIJ *l = (Mat_MPIBAIJ*)A->data; 1342dfbe8321SBarry Smith PetscErrorCode ierr; 1343d64ed03dSBarry Smith 1344d64ed03dSBarry Smith PetscFunctionBegin; 134558667388SSatish Balay ierr = MatZeroEntries(l->A);CHKERRQ(ierr); 134658667388SSatish Balay ierr = MatZeroEntries(l->B);CHKERRQ(ierr); 13473a40ed3dSBarry Smith PetscFunctionReturn(0); 134858667388SSatish Balay } 13490ac07820SSatish Balay 13504a2ae208SSatish Balay #undef __FUNCT__ 13514a2ae208SSatish Balay #define __FUNCT__ "MatGetInfo_MPIBAIJ" 1352dfbe8321SBarry Smith PetscErrorCode MatGetInfo_MPIBAIJ(Mat matin,MatInfoType flag,MatInfo *info) 13530ac07820SSatish Balay { 13544e220ebcSLois Curfman McInnes Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)matin->data; 13554e220ebcSLois Curfman McInnes Mat A = a->A,B = a->B; 1356dfbe8321SBarry Smith PetscErrorCode ierr; 1357329f5518SBarry Smith PetscReal isend[5],irecv[5]; 13580ac07820SSatish Balay 1359d64ed03dSBarry Smith PetscFunctionBegin; 1360d0f46423SBarry Smith info->block_size = (PetscReal)matin->rmap->bs; 13614e220ebcSLois Curfman McInnes ierr = MatGetInfo(A,MAT_LOCAL,info);CHKERRQ(ierr); 13620e4b21beSBarry Smith isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded; 1363de87f314SBarry Smith isend[3] = info->memory; isend[4] = info->mallocs; 13644e220ebcSLois Curfman McInnes ierr = MatGetInfo(B,MAT_LOCAL,info);CHKERRQ(ierr); 13650e4b21beSBarry Smith isend[0] += info->nz_used; isend[1] += info->nz_allocated; isend[2] += info->nz_unneeded; 1366de87f314SBarry Smith isend[3] += info->memory; isend[4] += info->mallocs; 13670ac07820SSatish Balay if (flag == MAT_LOCAL) { 13684e220ebcSLois Curfman McInnes info->nz_used = isend[0]; 13694e220ebcSLois Curfman McInnes info->nz_allocated = isend[1]; 13704e220ebcSLois Curfman McInnes info->nz_unneeded = isend[2]; 13714e220ebcSLois Curfman McInnes info->memory = isend[3]; 13724e220ebcSLois Curfman McInnes info->mallocs = isend[4]; 13730ac07820SSatish Balay } else if (flag == MAT_GLOBAL_MAX) { 13747adad957SLisandro Dalcin ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_MAX,((PetscObject)matin)->comm);CHKERRQ(ierr); 13754e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 13764e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 13774e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 13784e220ebcSLois Curfman McInnes info->memory = irecv[3]; 13794e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 13800ac07820SSatish Balay } else if (flag == MAT_GLOBAL_SUM) { 13817adad957SLisandro Dalcin ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_SUM,((PetscObject)matin)->comm);CHKERRQ(ierr); 13824e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 13834e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 13844e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 13854e220ebcSLois Curfman McInnes info->memory = irecv[3]; 13864e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 1387d41123aaSBarry Smith } else { 138865e19b50SBarry Smith SETERRQ1(((PetscObject)matin)->comm,PETSC_ERR_ARG_WRONG,"Unknown MatInfoType argument %d",(int)flag); 13890ac07820SSatish Balay } 13904e220ebcSLois Curfman McInnes info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */ 13914e220ebcSLois Curfman McInnes info->fill_ratio_needed = 0; 13924e220ebcSLois Curfman McInnes info->factor_mallocs = 0; 13933a40ed3dSBarry Smith PetscFunctionReturn(0); 13940ac07820SSatish Balay } 13950ac07820SSatish Balay 13964a2ae208SSatish Balay #undef __FUNCT__ 13974a2ae208SSatish Balay #define __FUNCT__ "MatSetOption_MPIBAIJ" 13984e0d8c25SBarry Smith PetscErrorCode MatSetOption_MPIBAIJ(Mat A,MatOption op,PetscTruth flg) 139958667388SSatish Balay { 140058667388SSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1401dfbe8321SBarry Smith PetscErrorCode ierr; 140258667388SSatish Balay 1403d64ed03dSBarry Smith PetscFunctionBegin; 140412c028f9SKris Buschelman switch (op) { 1405512a5fc5SBarry Smith case MAT_NEW_NONZERO_LOCATIONS: 140612c028f9SKris Buschelman case MAT_NEW_NONZERO_ALLOCATION_ERR: 140728b2fa4aSMatthew Knepley case MAT_UNUSED_NONZERO_LOCATION_ERR: 1408a9817697SBarry Smith case MAT_KEEP_NONZERO_PATTERN: 140912c028f9SKris Buschelman case MAT_NEW_NONZERO_LOCATION_ERR: 14104e0d8c25SBarry Smith ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 14114e0d8c25SBarry Smith ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr); 141212c028f9SKris Buschelman break; 141312c028f9SKris Buschelman case MAT_ROW_ORIENTED: 14144e0d8c25SBarry Smith a->roworiented = flg; 14154e0d8c25SBarry Smith ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 14164e0d8c25SBarry Smith ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr); 141712c028f9SKris Buschelman break; 14184e0d8c25SBarry Smith case MAT_NEW_DIAGONALS: 1419290bbb0aSBarry Smith ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr); 142012c028f9SKris Buschelman break; 142112c028f9SKris Buschelman case MAT_IGNORE_OFF_PROC_ENTRIES: 14224e0d8c25SBarry Smith a->donotstash = flg; 142312c028f9SKris Buschelman break; 142412c028f9SKris Buschelman case MAT_USE_HASH_TABLE: 14254e0d8c25SBarry Smith a->ht_flag = flg; 142612c028f9SKris Buschelman break; 142777e54ba9SKris Buschelman case MAT_SYMMETRIC: 142877e54ba9SKris Buschelman case MAT_STRUCTURALLY_SYMMETRIC: 14292188ac68SBarry Smith case MAT_HERMITIAN: 14302188ac68SBarry Smith case MAT_SYMMETRY_ETERNAL: 14314e0d8c25SBarry Smith ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 143277e54ba9SKris Buschelman break; 143312c028f9SKris Buschelman default: 143465e19b50SBarry Smith SETERRQ1(((PetscObject)A)->comm,PETSC_ERR_SUP,"unknown option %d",op); 1435d64ed03dSBarry Smith } 14363a40ed3dSBarry Smith PetscFunctionReturn(0); 143758667388SSatish Balay } 143858667388SSatish Balay 14394a2ae208SSatish Balay #undef __FUNCT__ 14404a2ae208SSatish Balay #define __FUNCT__ "MatTranspose_MPIBAIJ(" 1441fc4dec0aSBarry Smith PetscErrorCode MatTranspose_MPIBAIJ(Mat A,MatReuse reuse,Mat *matout) 14420ac07820SSatish Balay { 14430ac07820SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)A->data; 14440ac07820SSatish Balay Mat_SeqBAIJ *Aloc; 14450ac07820SSatish Balay Mat B; 1446dfbe8321SBarry Smith PetscErrorCode ierr; 1447d0f46423SBarry Smith PetscInt M=A->rmap->N,N=A->cmap->N,*ai,*aj,i,*rvals,j,k,col; 1448d0f46423SBarry Smith PetscInt bs=A->rmap->bs,mbs=baij->mbs; 14493eda8832SBarry Smith MatScalar *a; 14500ac07820SSatish Balay 1451d64ed03dSBarry Smith PetscFunctionBegin; 1452e7e72b3dSBarry Smith if (reuse == MAT_REUSE_MATRIX && A == *matout && M != N) SETERRQ(((PetscObject)A)->comm,PETSC_ERR_ARG_SIZ,"Square matrix only for in-place"); 1453fc4dec0aSBarry Smith if (reuse == MAT_INITIAL_MATRIX || *matout == A) { 14547adad957SLisandro Dalcin ierr = MatCreate(((PetscObject)A)->comm,&B);CHKERRQ(ierr); 1455d0f46423SBarry Smith ierr = MatSetSizes(B,A->cmap->n,A->rmap->n,N,M);CHKERRQ(ierr); 14567adad957SLisandro Dalcin ierr = MatSetType(B,((PetscObject)A)->type_name);CHKERRQ(ierr); 1457d0f46423SBarry Smith ierr = MatMPIBAIJSetPreallocation(B,A->rmap->bs,0,PETSC_NULL,0,PETSC_NULL);CHKERRQ(ierr); 1458fc4dec0aSBarry Smith } else { 1459fc4dec0aSBarry Smith B = *matout; 1460fc4dec0aSBarry Smith } 14610ac07820SSatish Balay 14620ac07820SSatish Balay /* copy over the A part */ 14630ac07820SSatish Balay Aloc = (Mat_SeqBAIJ*)baij->A->data; 14640ac07820SSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 1465b24ad042SBarry Smith ierr = PetscMalloc(bs*sizeof(PetscInt),&rvals);CHKERRQ(ierr); 14660ac07820SSatish Balay 14670ac07820SSatish Balay for (i=0; i<mbs; i++) { 1468899cda47SBarry Smith rvals[0] = bs*(baij->rstartbs + i); 14690ac07820SSatish Balay for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; } 14700ac07820SSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 1471899cda47SBarry Smith col = (baij->cstartbs+aj[j])*bs; 14720ac07820SSatish Balay for (k=0; k<bs; k++) { 147397e5c40aSBarry Smith ierr = MatSetValues_MPIBAIJ(B,1,&col,bs,rvals,a,INSERT_VALUES);CHKERRQ(ierr); 14740ac07820SSatish Balay col++; a += bs; 14750ac07820SSatish Balay } 14760ac07820SSatish Balay } 14770ac07820SSatish Balay } 14780ac07820SSatish Balay /* copy over the B part */ 14790ac07820SSatish Balay Aloc = (Mat_SeqBAIJ*)baij->B->data; 14800ac07820SSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 14810ac07820SSatish Balay for (i=0; i<mbs; i++) { 1482899cda47SBarry Smith rvals[0] = bs*(baij->rstartbs + i); 14830ac07820SSatish Balay for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; } 14840ac07820SSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 14850ac07820SSatish Balay col = baij->garray[aj[j]]*bs; 14860ac07820SSatish Balay for (k=0; k<bs; k++) { 148797e5c40aSBarry Smith ierr = MatSetValues_MPIBAIJ(B,1,&col,bs,rvals,a,INSERT_VALUES);CHKERRQ(ierr); 14880ac07820SSatish Balay col++; a += bs; 14890ac07820SSatish Balay } 14900ac07820SSatish Balay } 14910ac07820SSatish Balay } 1492606d414cSSatish Balay ierr = PetscFree(rvals);CHKERRQ(ierr); 14930ac07820SSatish Balay ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 14940ac07820SSatish Balay ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 14950ac07820SSatish Balay 1496815cbec1SBarry Smith if (reuse == MAT_INITIAL_MATRIX || *matout != A) { 14970ac07820SSatish Balay *matout = B; 14980ac07820SSatish Balay } else { 1499273d9f13SBarry Smith ierr = MatHeaderCopy(A,B);CHKERRQ(ierr); 15000ac07820SSatish Balay } 15013a40ed3dSBarry Smith PetscFunctionReturn(0); 15020ac07820SSatish Balay } 15030e95ebc0SSatish Balay 15044a2ae208SSatish Balay #undef __FUNCT__ 15054a2ae208SSatish Balay #define __FUNCT__ "MatDiagonalScale_MPIBAIJ" 1506dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_MPIBAIJ(Mat mat,Vec ll,Vec rr) 15070e95ebc0SSatish Balay { 150836c4a09eSSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 150936c4a09eSSatish Balay Mat a = baij->A,b = baij->B; 1510dfbe8321SBarry Smith PetscErrorCode ierr; 1511b24ad042SBarry Smith PetscInt s1,s2,s3; 15120e95ebc0SSatish Balay 1513d64ed03dSBarry Smith PetscFunctionBegin; 151436c4a09eSSatish Balay ierr = MatGetLocalSize(mat,&s2,&s3);CHKERRQ(ierr); 151536c4a09eSSatish Balay if (rr) { 151636c4a09eSSatish Balay ierr = VecGetLocalSize(rr,&s1);CHKERRQ(ierr); 1517e32f2f54SBarry Smith if (s1!=s3) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"right vector non-conforming local size"); 151836c4a09eSSatish Balay /* Overlap communication with computation. */ 1519ca9f406cSSatish Balay ierr = VecScatterBegin(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 152036c4a09eSSatish Balay } 15210e95ebc0SSatish Balay if (ll) { 15220e95ebc0SSatish Balay ierr = VecGetLocalSize(ll,&s1);CHKERRQ(ierr); 1523e32f2f54SBarry Smith if (s1!=s2) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"left vector non-conforming local size"); 1524a21fb8cbSBarry Smith ierr = (*b->ops->diagonalscale)(b,ll,PETSC_NULL);CHKERRQ(ierr); 15250e95ebc0SSatish Balay } 152636c4a09eSSatish Balay /* scale the diagonal block */ 152736c4a09eSSatish Balay ierr = (*a->ops->diagonalscale)(a,ll,rr);CHKERRQ(ierr); 152836c4a09eSSatish Balay 152936c4a09eSSatish Balay if (rr) { 153036c4a09eSSatish Balay /* Do a scatter end and then right scale the off-diagonal block */ 1531ca9f406cSSatish Balay ierr = VecScatterEnd(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1532a21fb8cbSBarry Smith ierr = (*b->ops->diagonalscale)(b,PETSC_NULL,baij->lvec);CHKERRQ(ierr); 153336c4a09eSSatish Balay } 153436c4a09eSSatish Balay 15353a40ed3dSBarry Smith PetscFunctionReturn(0); 15360e95ebc0SSatish Balay } 15370e95ebc0SSatish Balay 15384a2ae208SSatish Balay #undef __FUNCT__ 15394a2ae208SSatish Balay #define __FUNCT__ "MatZeroRows_MPIBAIJ" 1540f4df32b1SMatthew Knepley PetscErrorCode MatZeroRows_MPIBAIJ(Mat A,PetscInt N,const PetscInt rows[],PetscScalar diag) 15410ac07820SSatish Balay { 15420ac07820SSatish Balay Mat_MPIBAIJ *l = (Mat_MPIBAIJ*)A->data; 15436849ba73SBarry Smith PetscErrorCode ierr; 1544b24ad042SBarry Smith PetscMPIInt imdex,size = l->size,n,rank = l->rank; 1545d0f46423SBarry Smith PetscInt i,*owners = A->rmap->range; 1546b24ad042SBarry Smith PetscInt *nprocs,j,idx,nsends,row; 1547b24ad042SBarry Smith PetscInt nmax,*svalues,*starts,*owner,nrecvs; 15487adad957SLisandro Dalcin PetscInt *rvalues,tag = ((PetscObject)A)->tag,count,base,slen,*source,lastidx = -1; 1549d0f46423SBarry Smith PetscInt *lens,*lrows,*values,rstart_bs=A->rmap->rstart; 15507adad957SLisandro Dalcin MPI_Comm comm = ((PetscObject)A)->comm; 15510ac07820SSatish Balay MPI_Request *send_waits,*recv_waits; 15520ac07820SSatish Balay MPI_Status recv_status,*send_status; 15536543fbbaSBarry Smith #if defined(PETSC_DEBUG) 15546543fbbaSBarry Smith PetscTruth found = PETSC_FALSE; 15556543fbbaSBarry Smith #endif 15560ac07820SSatish Balay 1557d64ed03dSBarry Smith PetscFunctionBegin; 15580ac07820SSatish Balay /* first count number of contributors to each processor */ 1559b24ad042SBarry Smith ierr = PetscMalloc(2*size*sizeof(PetscInt),&nprocs);CHKERRQ(ierr); 1560b24ad042SBarry Smith ierr = PetscMemzero(nprocs,2*size*sizeof(PetscInt));CHKERRQ(ierr); 1561b24ad042SBarry Smith ierr = PetscMalloc((N+1)*sizeof(PetscInt),&owner);CHKERRQ(ierr); /* see note*/ 15626543fbbaSBarry Smith j = 0; 15630ac07820SSatish Balay for (i=0; i<N; i++) { 15646543fbbaSBarry Smith if (lastidx > (idx = rows[i])) j = 0; 15656543fbbaSBarry Smith lastidx = idx; 15666543fbbaSBarry Smith for (; j<size; j++) { 1567357c27ecSBarry Smith if (idx >= owners[j] && idx < owners[j+1]) { 15686543fbbaSBarry Smith nprocs[2*j]++; 15696543fbbaSBarry Smith nprocs[2*j+1] = 1; 15706543fbbaSBarry Smith owner[i] = j; 15716543fbbaSBarry Smith #if defined(PETSC_DEBUG) 15726543fbbaSBarry Smith found = PETSC_TRUE; 15736543fbbaSBarry Smith #endif 15746543fbbaSBarry Smith break; 15750ac07820SSatish Balay } 15760ac07820SSatish Balay } 15776543fbbaSBarry Smith #if defined(PETSC_DEBUG) 1578e32f2f54SBarry Smith if (!found) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Index out of range"); 15796543fbbaSBarry Smith found = PETSC_FALSE; 15806543fbbaSBarry Smith #endif 15810ac07820SSatish Balay } 1582c1dc657dSBarry Smith nsends = 0; for (i=0; i<size; i++) { nsends += nprocs[2*i+1];} 15830ac07820SSatish Balay 15840ac07820SSatish Balay /* inform other processors of number of messages and max length*/ 1585c1dc657dSBarry Smith ierr = PetscMaxSum(comm,nprocs,&nmax,&nrecvs);CHKERRQ(ierr); 15860ac07820SSatish Balay 15870ac07820SSatish Balay /* post receives: */ 1588b24ad042SBarry Smith ierr = PetscMalloc((nrecvs+1)*(nmax+1)*sizeof(PetscInt),&rvalues);CHKERRQ(ierr); 1589b0a32e0cSBarry Smith ierr = PetscMalloc((nrecvs+1)*sizeof(MPI_Request),&recv_waits);CHKERRQ(ierr); 15900ac07820SSatish Balay for (i=0; i<nrecvs; i++) { 1591b24ad042SBarry Smith ierr = MPI_Irecv(rvalues+nmax*i,nmax,MPIU_INT,MPI_ANY_SOURCE,tag,comm,recv_waits+i);CHKERRQ(ierr); 15920ac07820SSatish Balay } 15930ac07820SSatish Balay 15940ac07820SSatish Balay /* do sends: 15950ac07820SSatish Balay 1) starts[i] gives the starting index in svalues for stuff going to 15960ac07820SSatish Balay the ith processor 15970ac07820SSatish Balay */ 1598b24ad042SBarry Smith ierr = PetscMalloc((N+1)*sizeof(PetscInt),&svalues);CHKERRQ(ierr); 1599b0a32e0cSBarry Smith ierr = PetscMalloc((nsends+1)*sizeof(MPI_Request),&send_waits);CHKERRQ(ierr); 1600b24ad042SBarry Smith ierr = PetscMalloc((size+1)*sizeof(PetscInt),&starts);CHKERRQ(ierr); 16010ac07820SSatish Balay starts[0] = 0; 1602c1dc657dSBarry Smith for (i=1; i<size; i++) { starts[i] = starts[i-1] + nprocs[2*i-2];} 16030ac07820SSatish Balay for (i=0; i<N; i++) { 16040ac07820SSatish Balay svalues[starts[owner[i]]++] = rows[i]; 16050ac07820SSatish Balay } 16060ac07820SSatish Balay 16070ac07820SSatish Balay starts[0] = 0; 1608c1dc657dSBarry Smith for (i=1; i<size+1; i++) { starts[i] = starts[i-1] + nprocs[2*i-2];} 16090ac07820SSatish Balay count = 0; 16100ac07820SSatish Balay for (i=0; i<size; i++) { 1611c1dc657dSBarry Smith if (nprocs[2*i+1]) { 1612b24ad042SBarry Smith ierr = MPI_Isend(svalues+starts[i],nprocs[2*i],MPIU_INT,i,tag,comm,send_waits+count++);CHKERRQ(ierr); 16130ac07820SSatish Balay } 16140ac07820SSatish Balay } 1615606d414cSSatish Balay ierr = PetscFree(starts);CHKERRQ(ierr); 16160ac07820SSatish Balay 1617357c27ecSBarry Smith base = owners[rank]; 16180ac07820SSatish Balay 16190ac07820SSatish Balay /* wait on receives */ 1620fca92195SBarry Smith ierr = PetscMalloc2(nrecvs+1,PetscInt,&lens,nrecvs+1,PetscInt,&source);CHKERRQ(ierr); 1621fca92195SBarry Smith count = nrecvs; 1622fca92195SBarry Smith slen = 0; 16230ac07820SSatish Balay while (count) { 1624ca161407SBarry Smith ierr = MPI_Waitany(nrecvs,recv_waits,&imdex,&recv_status);CHKERRQ(ierr); 16250ac07820SSatish Balay /* unpack receives into our local space */ 1626b24ad042SBarry Smith ierr = MPI_Get_count(&recv_status,MPIU_INT,&n);CHKERRQ(ierr); 16270ac07820SSatish Balay source[imdex] = recv_status.MPI_SOURCE; 16280ac07820SSatish Balay lens[imdex] = n; 16290ac07820SSatish Balay slen += n; 16300ac07820SSatish Balay count--; 16310ac07820SSatish Balay } 1632606d414cSSatish Balay ierr = PetscFree(recv_waits);CHKERRQ(ierr); 16330ac07820SSatish Balay 16340ac07820SSatish Balay /* move the data into the send scatter */ 1635b24ad042SBarry Smith ierr = PetscMalloc((slen+1)*sizeof(PetscInt),&lrows);CHKERRQ(ierr); 16360ac07820SSatish Balay count = 0; 16370ac07820SSatish Balay for (i=0; i<nrecvs; i++) { 16380ac07820SSatish Balay values = rvalues + i*nmax; 16390ac07820SSatish Balay for (j=0; j<lens[i]; j++) { 16400ac07820SSatish Balay lrows[count++] = values[j] - base; 16410ac07820SSatish Balay } 16420ac07820SSatish Balay } 1643606d414cSSatish Balay ierr = PetscFree(rvalues);CHKERRQ(ierr); 1644fca92195SBarry Smith ierr = PetscFree2(lens,source);CHKERRQ(ierr); 1645606d414cSSatish Balay ierr = PetscFree(owner);CHKERRQ(ierr); 1646606d414cSSatish Balay ierr = PetscFree(nprocs);CHKERRQ(ierr); 16470ac07820SSatish Balay 16480ac07820SSatish Balay /* actually zap the local rows */ 164972dacd9aSBarry Smith /* 165072dacd9aSBarry Smith Zero the required rows. If the "diagonal block" of the matrix 1651a8c7a070SBarry Smith is square and the user wishes to set the diagonal we use separate 165272dacd9aSBarry Smith code so that MatSetValues() is not called for each diagonal allocating 165372dacd9aSBarry Smith new memory, thus calling lots of mallocs and slowing things down. 165472dacd9aSBarry Smith 165572dacd9aSBarry Smith */ 16569c957beeSSatish Balay /* must zero l->B before l->A because the (diag) case below may put values into l->B*/ 1657f4df32b1SMatthew Knepley ierr = MatZeroRows_SeqBAIJ(l->B,slen,lrows,0.0);CHKERRQ(ierr); 1658d0f46423SBarry Smith if ((diag != 0.0) && (l->A->rmap->N == l->A->cmap->N)) { 1659f4df32b1SMatthew Knepley ierr = MatZeroRows_SeqBAIJ(l->A,slen,lrows,diag);CHKERRQ(ierr); 1660f4df32b1SMatthew Knepley } else if (diag != 0.0) { 1661f4df32b1SMatthew Knepley ierr = MatZeroRows_SeqBAIJ(l->A,slen,lrows,0.0);CHKERRQ(ierr); 1662e7e72b3dSBarry Smith if (((Mat_SeqBAIJ*)l->A->data)->nonew) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"MatZeroRows() on rectangular matrices cannot be used with the Mat options \n\ 1663512a5fc5SBarry Smith MAT_NEW_NONZERO_LOCATIONS,MAT_NEW_NONZERO_LOCATION_ERR,MAT_NEW_NONZERO_ALLOCATION_ERR"); 1664a07cd24cSSatish Balay for (i=0; i<slen; i++) { 1665a07cd24cSSatish Balay row = lrows[i] + rstart_bs; 1666f4df32b1SMatthew Knepley ierr = MatSetValues(A,1,&row,1,&row,&diag,INSERT_VALUES);CHKERRQ(ierr); 1667a07cd24cSSatish Balay } 1668a07cd24cSSatish Balay ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 1669a07cd24cSSatish Balay ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 16709c957beeSSatish Balay } else { 1671f4df32b1SMatthew Knepley ierr = MatZeroRows_SeqBAIJ(l->A,slen,lrows,0.0);CHKERRQ(ierr); 1672a07cd24cSSatish Balay } 16739c957beeSSatish Balay 1674606d414cSSatish Balay ierr = PetscFree(lrows);CHKERRQ(ierr); 1675a07cd24cSSatish Balay 16760ac07820SSatish Balay /* wait on sends */ 16770ac07820SSatish Balay if (nsends) { 167882502324SSatish Balay ierr = PetscMalloc(nsends*sizeof(MPI_Status),&send_status);CHKERRQ(ierr); 1679ca161407SBarry Smith ierr = MPI_Waitall(nsends,send_waits,send_status);CHKERRQ(ierr); 1680606d414cSSatish Balay ierr = PetscFree(send_status);CHKERRQ(ierr); 16810ac07820SSatish Balay } 1682606d414cSSatish Balay ierr = PetscFree(send_waits);CHKERRQ(ierr); 1683606d414cSSatish Balay ierr = PetscFree(svalues);CHKERRQ(ierr); 16840ac07820SSatish Balay 16853a40ed3dSBarry Smith PetscFunctionReturn(0); 16860ac07820SSatish Balay } 168772dacd9aSBarry Smith 16884a2ae208SSatish Balay #undef __FUNCT__ 16894a2ae208SSatish Balay #define __FUNCT__ "MatSetUnfactored_MPIBAIJ" 1690dfbe8321SBarry Smith PetscErrorCode MatSetUnfactored_MPIBAIJ(Mat A) 1691bb5a7306SBarry Smith { 1692bb5a7306SBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1693dfbe8321SBarry Smith PetscErrorCode ierr; 1694d64ed03dSBarry Smith 1695d64ed03dSBarry Smith PetscFunctionBegin; 1696bb5a7306SBarry Smith ierr = MatSetUnfactored(a->A);CHKERRQ(ierr); 16973a40ed3dSBarry Smith PetscFunctionReturn(0); 1698bb5a7306SBarry Smith } 1699bb5a7306SBarry Smith 17006849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIBAIJ(Mat,MatDuplicateOption,Mat *); 17010ac07820SSatish Balay 17024a2ae208SSatish Balay #undef __FUNCT__ 17034a2ae208SSatish Balay #define __FUNCT__ "MatEqual_MPIBAIJ" 1704dfbe8321SBarry Smith PetscErrorCode MatEqual_MPIBAIJ(Mat A,Mat B,PetscTruth *flag) 17057fc3c18eSBarry Smith { 17067fc3c18eSBarry Smith Mat_MPIBAIJ *matB = (Mat_MPIBAIJ*)B->data,*matA = (Mat_MPIBAIJ*)A->data; 17077fc3c18eSBarry Smith Mat a,b,c,d; 17087fc3c18eSBarry Smith PetscTruth flg; 1709dfbe8321SBarry Smith PetscErrorCode ierr; 17107fc3c18eSBarry Smith 17117fc3c18eSBarry Smith PetscFunctionBegin; 17127fc3c18eSBarry Smith a = matA->A; b = matA->B; 17137fc3c18eSBarry Smith c = matB->A; d = matB->B; 17147fc3c18eSBarry Smith 17157fc3c18eSBarry Smith ierr = MatEqual(a,c,&flg);CHKERRQ(ierr); 1716abc0a331SBarry Smith if (flg) { 17177fc3c18eSBarry Smith ierr = MatEqual(b,d,&flg);CHKERRQ(ierr); 17187fc3c18eSBarry Smith } 17197adad957SLisandro Dalcin ierr = MPI_Allreduce(&flg,flag,1,MPI_INT,MPI_LAND,((PetscObject)A)->comm);CHKERRQ(ierr); 17207fc3c18eSBarry Smith PetscFunctionReturn(0); 17217fc3c18eSBarry Smith } 17227fc3c18eSBarry Smith 17233c896bc6SHong Zhang #undef __FUNCT__ 17243c896bc6SHong Zhang #define __FUNCT__ "MatCopy_MPIBAIJ" 17253c896bc6SHong Zhang PetscErrorCode MatCopy_MPIBAIJ(Mat A,Mat B,MatStructure str) 17263c896bc6SHong Zhang { 17273c896bc6SHong Zhang PetscErrorCode ierr; 17283c896bc6SHong Zhang Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 17293c896bc6SHong Zhang Mat_MPIBAIJ *b = (Mat_MPIBAIJ *)B->data; 17303c896bc6SHong Zhang 17313c896bc6SHong Zhang PetscFunctionBegin; 17323c896bc6SHong Zhang /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */ 17333c896bc6SHong Zhang if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) { 17343c896bc6SHong Zhang ierr = MatCopy_Basic(A,B,str);CHKERRQ(ierr); 17353c896bc6SHong Zhang } else { 17363c896bc6SHong Zhang ierr = MatCopy(a->A,b->A,str);CHKERRQ(ierr); 17373c896bc6SHong Zhang ierr = MatCopy(a->B,b->B,str);CHKERRQ(ierr); 17383c896bc6SHong Zhang } 17393c896bc6SHong Zhang PetscFunctionReturn(0); 17403c896bc6SHong Zhang } 1741273d9f13SBarry Smith 17424a2ae208SSatish Balay #undef __FUNCT__ 17434a2ae208SSatish Balay #define __FUNCT__ "MatSetUpPreallocation_MPIBAIJ" 1744dfbe8321SBarry Smith PetscErrorCode MatSetUpPreallocation_MPIBAIJ(Mat A) 1745273d9f13SBarry Smith { 1746dfbe8321SBarry Smith PetscErrorCode ierr; 1747273d9f13SBarry Smith 1748273d9f13SBarry Smith PetscFunctionBegin; 1749db4efbfdSBarry Smith ierr = MatMPIBAIJSetPreallocation(A,-PetscMax(A->rmap->bs,1),PETSC_DEFAULT,0,PETSC_DEFAULT,0);CHKERRQ(ierr); 1750273d9f13SBarry Smith PetscFunctionReturn(0); 1751273d9f13SBarry Smith } 1752273d9f13SBarry Smith 17534fe895cdSHong Zhang #undef __FUNCT__ 17544fe895cdSHong Zhang #define __FUNCT__ "MatAXPY_MPIBAIJ" 17554fe895cdSHong Zhang PetscErrorCode MatAXPY_MPIBAIJ(Mat Y,PetscScalar a,Mat X,MatStructure str) 17564fe895cdSHong Zhang { 17574fe895cdSHong Zhang PetscErrorCode ierr; 17584fe895cdSHong Zhang Mat_MPIBAIJ *xx=(Mat_MPIBAIJ *)X->data,*yy=(Mat_MPIBAIJ *)Y->data; 17594fe895cdSHong Zhang PetscBLASInt bnz,one=1; 17604fe895cdSHong Zhang Mat_SeqBAIJ *x,*y; 17614fe895cdSHong Zhang 17624fe895cdSHong Zhang PetscFunctionBegin; 17634fe895cdSHong Zhang if (str == SAME_NONZERO_PATTERN) { 17644fe895cdSHong Zhang PetscScalar alpha = a; 17654fe895cdSHong Zhang x = (Mat_SeqBAIJ *)xx->A->data; 17664fe895cdSHong Zhang y = (Mat_SeqBAIJ *)yy->A->data; 17670805154bSBarry Smith bnz = PetscBLASIntCast(x->nz); 17684fe895cdSHong Zhang BLASaxpy_(&bnz,&alpha,x->a,&one,y->a,&one); 17694fe895cdSHong Zhang x = (Mat_SeqBAIJ *)xx->B->data; 17704fe895cdSHong Zhang y = (Mat_SeqBAIJ *)yy->B->data; 17710805154bSBarry Smith bnz = PetscBLASIntCast(x->nz); 17724fe895cdSHong Zhang BLASaxpy_(&bnz,&alpha,x->a,&one,y->a,&one); 17734fe895cdSHong Zhang } else { 17744fe895cdSHong Zhang ierr = MatAXPY_Basic(Y,a,X,str);CHKERRQ(ierr); 17754fe895cdSHong Zhang } 17764fe895cdSHong Zhang PetscFunctionReturn(0); 17774fe895cdSHong Zhang } 17784fe895cdSHong Zhang 177999cafbc1SBarry Smith #undef __FUNCT__ 178041c166b1SJed Brown #define __FUNCT__ "MatSetBlockSize_MPIBAIJ" 178141c166b1SJed Brown PetscErrorCode MatSetBlockSize_MPIBAIJ(Mat A,PetscInt bs) 178241c166b1SJed Brown { 178341c166b1SJed Brown Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1784829b6ff0SJed Brown PetscInt rbs,cbs; 178541c166b1SJed Brown PetscErrorCode ierr; 178641c166b1SJed Brown 178741c166b1SJed Brown PetscFunctionBegin; 178841c166b1SJed Brown ierr = MatSetBlockSize(a->A,bs);CHKERRQ(ierr); 178941c166b1SJed Brown ierr = MatSetBlockSize(a->B,bs);CHKERRQ(ierr); 1790829b6ff0SJed Brown ierr = PetscLayoutGetBlockSize(A->rmap,&rbs);CHKERRQ(ierr); 1791829b6ff0SJed Brown ierr = PetscLayoutGetBlockSize(A->cmap,&cbs);CHKERRQ(ierr); 1792e32f2f54SBarry Smith if (rbs != bs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Attempt to set block size %d with BAIJ %d",bs,rbs); 1793e32f2f54SBarry Smith if (cbs != bs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Attempt to set block size %d with BAIJ %d",bs,cbs); 179441c166b1SJed Brown PetscFunctionReturn(0); 179541c166b1SJed Brown } 179641c166b1SJed Brown 179741c166b1SJed Brown #undef __FUNCT__ 179899cafbc1SBarry Smith #define __FUNCT__ "MatRealPart_MPIBAIJ" 179999cafbc1SBarry Smith PetscErrorCode MatRealPart_MPIBAIJ(Mat A) 180099cafbc1SBarry Smith { 180199cafbc1SBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 180299cafbc1SBarry Smith PetscErrorCode ierr; 180399cafbc1SBarry Smith 180499cafbc1SBarry Smith PetscFunctionBegin; 180599cafbc1SBarry Smith ierr = MatRealPart(a->A);CHKERRQ(ierr); 180699cafbc1SBarry Smith ierr = MatRealPart(a->B);CHKERRQ(ierr); 180799cafbc1SBarry Smith PetscFunctionReturn(0); 180899cafbc1SBarry Smith } 180999cafbc1SBarry Smith 181099cafbc1SBarry Smith #undef __FUNCT__ 181199cafbc1SBarry Smith #define __FUNCT__ "MatImaginaryPart_MPIBAIJ" 181299cafbc1SBarry Smith PetscErrorCode MatImaginaryPart_MPIBAIJ(Mat A) 181399cafbc1SBarry Smith { 181499cafbc1SBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 181599cafbc1SBarry Smith PetscErrorCode ierr; 181699cafbc1SBarry Smith 181799cafbc1SBarry Smith PetscFunctionBegin; 181899cafbc1SBarry Smith ierr = MatImaginaryPart(a->A);CHKERRQ(ierr); 181999cafbc1SBarry Smith ierr = MatImaginaryPart(a->B);CHKERRQ(ierr); 182099cafbc1SBarry Smith PetscFunctionReturn(0); 182199cafbc1SBarry Smith } 182299cafbc1SBarry Smith 182382094794SBarry Smith #undef __FUNCT__ 182482094794SBarry Smith #define __FUNCT__ "MatGetSubMatrix_MPIBAIJ" 18254aa3045dSJed Brown PetscErrorCode MatGetSubMatrix_MPIBAIJ(Mat mat,IS isrow,IS iscol,MatReuse call,Mat *newmat) 18264aa3045dSJed Brown { 18274aa3045dSJed Brown PetscErrorCode ierr; 18284aa3045dSJed Brown IS iscol_local; 18294aa3045dSJed Brown PetscInt csize; 18304aa3045dSJed Brown 18314aa3045dSJed Brown PetscFunctionBegin; 18324aa3045dSJed Brown ierr = ISGetLocalSize(iscol,&csize);CHKERRQ(ierr); 1833b79d0421SJed Brown if (call == MAT_REUSE_MATRIX) { 1834b79d0421SJed Brown ierr = PetscObjectQuery((PetscObject)*newmat,"ISAllGather",(PetscObject*)&iscol_local);CHKERRQ(ierr); 1835e32f2f54SBarry Smith if (!iscol_local) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Submatrix passed in was not used before, cannot reuse"); 1836b79d0421SJed Brown } else { 18374aa3045dSJed Brown ierr = ISAllGather(iscol,&iscol_local);CHKERRQ(ierr); 1838b79d0421SJed Brown } 18394aa3045dSJed Brown ierr = MatGetSubMatrix_MPIBAIJ_Private(mat,isrow,iscol_local,csize,call,newmat);CHKERRQ(ierr); 1840b79d0421SJed Brown if (call == MAT_INITIAL_MATRIX) { 1841b79d0421SJed Brown ierr = PetscObjectCompose((PetscObject)*newmat,"ISAllGather",(PetscObject)iscol_local);CHKERRQ(ierr); 18424aa3045dSJed Brown ierr = ISDestroy(iscol_local);CHKERRQ(ierr); 1843b79d0421SJed Brown } 18444aa3045dSJed Brown PetscFunctionReturn(0); 18454aa3045dSJed Brown } 18464aa3045dSJed Brown 18474aa3045dSJed Brown #undef __FUNCT__ 18484aa3045dSJed Brown #define __FUNCT__ "MatGetSubMatrix_MPIBAIJ" 184982094794SBarry Smith /* 185082094794SBarry Smith Not great since it makes two copies of the submatrix, first an SeqBAIJ 185182094794SBarry Smith in local and then by concatenating the local matrices the end result. 185282094794SBarry Smith Writing it directly would be much like MatGetSubMatrices_MPIBAIJ() 185382094794SBarry Smith */ 18544aa3045dSJed Brown PetscErrorCode MatGetSubMatrix_MPIBAIJ_Private(Mat mat,IS isrow,IS iscol,PetscInt csize,MatReuse call,Mat *newmat) 185582094794SBarry Smith { 185682094794SBarry Smith PetscErrorCode ierr; 185782094794SBarry Smith PetscMPIInt rank,size; 185882094794SBarry Smith PetscInt i,m,n,rstart,row,rend,nz,*cwork,j,bs; 185982094794SBarry Smith PetscInt *ii,*jj,nlocal,*dlens,*olens,dlen,olen,jend,mglobal; 186082094794SBarry Smith Mat *local,M,Mreuse; 186182094794SBarry Smith MatScalar *vwork,*aa; 186282094794SBarry Smith MPI_Comm comm = ((PetscObject)mat)->comm; 186382094794SBarry Smith Mat_SeqBAIJ *aij; 186482094794SBarry Smith 186582094794SBarry Smith 186682094794SBarry Smith PetscFunctionBegin; 186782094794SBarry Smith ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 186882094794SBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 186982094794SBarry Smith 187082094794SBarry Smith if (call == MAT_REUSE_MATRIX) { 187182094794SBarry Smith ierr = PetscObjectQuery((PetscObject)*newmat,"SubMatrix",(PetscObject *)&Mreuse);CHKERRQ(ierr); 1872e32f2f54SBarry Smith if (!Mreuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Submatrix passed in was not used before, cannot reuse"); 187382094794SBarry Smith local = &Mreuse; 187482094794SBarry Smith ierr = MatGetSubMatrices(mat,1,&isrow,&iscol,MAT_REUSE_MATRIX,&local);CHKERRQ(ierr); 187582094794SBarry Smith } else { 187682094794SBarry Smith ierr = MatGetSubMatrices(mat,1,&isrow,&iscol,MAT_INITIAL_MATRIX,&local);CHKERRQ(ierr); 187782094794SBarry Smith Mreuse = *local; 187882094794SBarry Smith ierr = PetscFree(local);CHKERRQ(ierr); 187982094794SBarry Smith } 188082094794SBarry Smith 188182094794SBarry Smith /* 188282094794SBarry Smith m - number of local rows 188382094794SBarry Smith n - number of columns (same on all processors) 188482094794SBarry Smith rstart - first row in new global matrix generated 188582094794SBarry Smith */ 188682094794SBarry Smith ierr = MatGetBlockSize(mat,&bs);CHKERRQ(ierr); 188782094794SBarry Smith ierr = MatGetSize(Mreuse,&m,&n);CHKERRQ(ierr); 188882094794SBarry Smith m = m/bs; 188982094794SBarry Smith n = n/bs; 189082094794SBarry Smith 189182094794SBarry Smith if (call == MAT_INITIAL_MATRIX) { 189282094794SBarry Smith aij = (Mat_SeqBAIJ*)(Mreuse)->data; 189382094794SBarry Smith ii = aij->i; 189482094794SBarry Smith jj = aij->j; 189582094794SBarry Smith 189682094794SBarry Smith /* 189782094794SBarry Smith Determine the number of non-zeros in the diagonal and off-diagonal 189882094794SBarry Smith portions of the matrix in order to do correct preallocation 189982094794SBarry Smith */ 190082094794SBarry Smith 190182094794SBarry Smith /* first get start and end of "diagonal" columns */ 190282094794SBarry Smith if (csize == PETSC_DECIDE) { 190382094794SBarry Smith ierr = ISGetSize(isrow,&mglobal);CHKERRQ(ierr); 190482094794SBarry Smith if (mglobal == n*bs) { /* square matrix */ 190582094794SBarry Smith nlocal = m; 190682094794SBarry Smith } else { 190782094794SBarry Smith nlocal = n/size + ((n % size) > rank); 190882094794SBarry Smith } 190982094794SBarry Smith } else { 191082094794SBarry Smith nlocal = csize/bs; 191182094794SBarry Smith } 191282094794SBarry Smith ierr = MPI_Scan(&nlocal,&rend,1,MPIU_INT,MPI_SUM,comm);CHKERRQ(ierr); 191382094794SBarry Smith rstart = rend - nlocal; 191465e19b50SBarry Smith if (rank == size - 1 && rend != n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Local column sizes %D do not add up to total number of columns %D",rend,n); 191582094794SBarry Smith 191682094794SBarry Smith /* next, compute all the lengths */ 191782094794SBarry Smith ierr = PetscMalloc((2*m+1)*sizeof(PetscInt),&dlens);CHKERRQ(ierr); 191882094794SBarry Smith olens = dlens + m; 191982094794SBarry Smith for (i=0; i<m; i++) { 192082094794SBarry Smith jend = ii[i+1] - ii[i]; 192182094794SBarry Smith olen = 0; 192282094794SBarry Smith dlen = 0; 192382094794SBarry Smith for (j=0; j<jend; j++) { 192482094794SBarry Smith if (*jj < rstart || *jj >= rend) olen++; 192582094794SBarry Smith else dlen++; 192682094794SBarry Smith jj++; 192782094794SBarry Smith } 192882094794SBarry Smith olens[i] = olen; 192982094794SBarry Smith dlens[i] = dlen; 193082094794SBarry Smith } 193182094794SBarry Smith ierr = MatCreate(comm,&M);CHKERRQ(ierr); 193282094794SBarry Smith ierr = MatSetSizes(M,bs*m,bs*nlocal,PETSC_DECIDE,bs*n);CHKERRQ(ierr); 193382094794SBarry Smith ierr = MatSetType(M,((PetscObject)mat)->type_name);CHKERRQ(ierr); 193482094794SBarry Smith ierr = MatMPIBAIJSetPreallocation(M,bs,0,dlens,0,olens);CHKERRQ(ierr); 193582094794SBarry Smith ierr = PetscFree(dlens);CHKERRQ(ierr); 193682094794SBarry Smith } else { 193782094794SBarry Smith PetscInt ml,nl; 193882094794SBarry Smith 193982094794SBarry Smith M = *newmat; 194082094794SBarry Smith ierr = MatGetLocalSize(M,&ml,&nl);CHKERRQ(ierr); 1941e32f2f54SBarry Smith if (ml != m) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Previous matrix must be same size/layout as request"); 194282094794SBarry Smith ierr = MatZeroEntries(M);CHKERRQ(ierr); 194382094794SBarry Smith /* 194482094794SBarry Smith The next two lines are needed so we may call MatSetValues_MPIAIJ() below directly, 194582094794SBarry Smith rather than the slower MatSetValues(). 194682094794SBarry Smith */ 194782094794SBarry Smith M->was_assembled = PETSC_TRUE; 194882094794SBarry Smith M->assembled = PETSC_FALSE; 194982094794SBarry Smith } 195082094794SBarry Smith ierr = MatSetOption(M,MAT_ROW_ORIENTED,PETSC_FALSE);CHKERRQ(ierr); 195182094794SBarry Smith ierr = MatGetOwnershipRange(M,&rstart,&rend);CHKERRQ(ierr); 195282094794SBarry Smith aij = (Mat_SeqBAIJ*)(Mreuse)->data; 195382094794SBarry Smith ii = aij->i; 195482094794SBarry Smith jj = aij->j; 195582094794SBarry Smith aa = aij->a; 195682094794SBarry Smith for (i=0; i<m; i++) { 195782094794SBarry Smith row = rstart/bs + i; 195882094794SBarry Smith nz = ii[i+1] - ii[i]; 195982094794SBarry Smith cwork = jj; jj += nz; 196082094794SBarry Smith vwork = aa; aa += nz; 196182094794SBarry Smith ierr = MatSetValuesBlocked_MPIBAIJ(M,1,&row,nz,cwork,vwork,INSERT_VALUES);CHKERRQ(ierr); 196282094794SBarry Smith } 196382094794SBarry Smith 196482094794SBarry Smith ierr = MatAssemblyBegin(M,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 196582094794SBarry Smith ierr = MatAssemblyEnd(M,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 196682094794SBarry Smith *newmat = M; 196782094794SBarry Smith 196882094794SBarry Smith /* save submatrix used in processor for next request */ 196982094794SBarry Smith if (call == MAT_INITIAL_MATRIX) { 197082094794SBarry Smith ierr = PetscObjectCompose((PetscObject)M,"SubMatrix",(PetscObject)Mreuse);CHKERRQ(ierr); 197182094794SBarry Smith ierr = PetscObjectDereference((PetscObject)Mreuse);CHKERRQ(ierr); 197282094794SBarry Smith } 197382094794SBarry Smith 197482094794SBarry Smith PetscFunctionReturn(0); 197582094794SBarry Smith } 197682094794SBarry Smith 197782094794SBarry Smith #undef __FUNCT__ 197882094794SBarry Smith #define __FUNCT__ "MatPermute_MPIBAIJ" 197982094794SBarry Smith PetscErrorCode MatPermute_MPIBAIJ(Mat A,IS rowp,IS colp,Mat *B) 198082094794SBarry Smith { 198182094794SBarry Smith MPI_Comm comm,pcomm; 198282094794SBarry Smith PetscInt first,local_size,nrows; 198382094794SBarry Smith const PetscInt *rows; 1984dbf0e21dSBarry Smith PetscMPIInt size; 198582094794SBarry Smith IS crowp,growp,irowp,lrowp,lcolp,icolp; 198682094794SBarry Smith PetscErrorCode ierr; 198782094794SBarry Smith 198882094794SBarry Smith PetscFunctionBegin; 198982094794SBarry Smith ierr = PetscObjectGetComm((PetscObject)A,&comm);CHKERRQ(ierr); 199082094794SBarry Smith /* make a collective version of 'rowp' */ 199182094794SBarry Smith ierr = PetscObjectGetComm((PetscObject)rowp,&pcomm);CHKERRQ(ierr); 199282094794SBarry Smith if (pcomm==comm) { 199382094794SBarry Smith crowp = rowp; 199482094794SBarry Smith } else { 199582094794SBarry Smith ierr = ISGetSize(rowp,&nrows);CHKERRQ(ierr); 199682094794SBarry Smith ierr = ISGetIndices(rowp,&rows);CHKERRQ(ierr); 199782094794SBarry Smith ierr = ISCreateGeneral(comm,nrows,rows,&crowp);CHKERRQ(ierr); 199882094794SBarry Smith ierr = ISRestoreIndices(rowp,&rows);CHKERRQ(ierr); 199982094794SBarry Smith } 200082094794SBarry Smith /* collect the global row permutation and invert it */ 200182094794SBarry Smith ierr = ISAllGather(crowp,&growp);CHKERRQ(ierr); 200282094794SBarry Smith ierr = ISSetPermutation(growp);CHKERRQ(ierr); 200382094794SBarry Smith if (pcomm!=comm) { 200482094794SBarry Smith ierr = ISDestroy(crowp);CHKERRQ(ierr); 200582094794SBarry Smith } 200682094794SBarry Smith ierr = ISInvertPermutation(growp,PETSC_DECIDE,&irowp);CHKERRQ(ierr); 200782094794SBarry Smith /* get the local target indices */ 200882094794SBarry Smith ierr = MatGetOwnershipRange(A,&first,PETSC_NULL);CHKERRQ(ierr); 200982094794SBarry Smith ierr = MatGetLocalSize(A,&local_size,PETSC_NULL);CHKERRQ(ierr); 201082094794SBarry Smith ierr = ISGetIndices(irowp,&rows);CHKERRQ(ierr); 201182094794SBarry Smith ierr = ISCreateGeneral(MPI_COMM_SELF,local_size,rows+first,&lrowp);CHKERRQ(ierr); 201282094794SBarry Smith ierr = ISRestoreIndices(irowp,&rows);CHKERRQ(ierr); 201382094794SBarry Smith ierr = ISDestroy(irowp);CHKERRQ(ierr); 201482094794SBarry Smith /* the column permutation is so much easier; 201582094794SBarry Smith make a local version of 'colp' and invert it */ 201682094794SBarry Smith ierr = PetscObjectGetComm((PetscObject)colp,&pcomm);CHKERRQ(ierr); 2017dbf0e21dSBarry Smith ierr = MPI_Comm_size(pcomm,&size);CHKERRQ(ierr); 2018dbf0e21dSBarry Smith if (size==1) { 201982094794SBarry Smith lcolp = colp; 202082094794SBarry Smith } else { 202182094794SBarry Smith ierr = ISGetSize(colp,&nrows);CHKERRQ(ierr); 202282094794SBarry Smith ierr = ISGetIndices(colp,&rows);CHKERRQ(ierr); 202382094794SBarry Smith ierr = ISCreateGeneral(MPI_COMM_SELF,nrows,rows,&lcolp);CHKERRQ(ierr); 202482094794SBarry Smith } 2025dbf0e21dSBarry Smith ierr = ISSetPermutation(lcolp);CHKERRQ(ierr); 202682094794SBarry Smith ierr = ISInvertPermutation(lcolp,PETSC_DECIDE,&icolp);CHKERRQ(ierr); 20274aa3045dSJed Brown ierr = ISSetPermutation(icolp);CHKERRQ(ierr); 2028dbf0e21dSBarry Smith if (size>1) { 202982094794SBarry Smith ierr = ISRestoreIndices(colp,&rows);CHKERRQ(ierr); 203082094794SBarry Smith ierr = ISDestroy(lcolp);CHKERRQ(ierr); 203182094794SBarry Smith } 203282094794SBarry Smith /* now we just get the submatrix */ 20334aa3045dSJed Brown ierr = MatGetSubMatrix_MPIBAIJ_Private(A,lrowp,icolp,local_size,MAT_INITIAL_MATRIX,B);CHKERRQ(ierr); 203482094794SBarry Smith /* clean up */ 203582094794SBarry Smith ierr = ISDestroy(lrowp);CHKERRQ(ierr); 203682094794SBarry Smith ierr = ISDestroy(icolp);CHKERRQ(ierr); 203782094794SBarry Smith PetscFunctionReturn(0); 203882094794SBarry Smith } 203982094794SBarry Smith 20408c7482ecSBarry Smith #undef __FUNCT__ 20418c7482ecSBarry Smith #define __FUNCT__ "MatGetGhosts_MPIBAIJ" 20428c7482ecSBarry Smith PetscErrorCode PETSCMAT_DLLEXPORT MatGetGhosts_MPIBAIJ(Mat mat,PetscInt *nghosts,const PetscInt *ghosts[]) 20438c7482ecSBarry Smith { 20448c7482ecSBarry Smith Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*) mat->data; 20458c7482ecSBarry Smith Mat_SeqBAIJ *B = (Mat_SeqBAIJ*)baij->B->data; 20468c7482ecSBarry Smith 20478c7482ecSBarry Smith PetscFunctionBegin; 20488c7482ecSBarry Smith if (nghosts) { *nghosts = B->nbs;} 20498c7482ecSBarry Smith if (ghosts) {*ghosts = baij->garray;} 20508c7482ecSBarry Smith PetscFunctionReturn(0); 20518c7482ecSBarry Smith } 20528c7482ecSBarry Smith 2053f6d58c54SBarry Smith EXTERN PetscErrorCode CreateColmap_MPIBAIJ_Private(Mat); 2054f6d58c54SBarry Smith 2055f6d58c54SBarry Smith #undef __FUNCT__ 2056f6d58c54SBarry Smith #define __FUNCT__ "MatFDColoringCreate_MPIBAIJ" 2057f6d58c54SBarry Smith /* 2058f6d58c54SBarry Smith This routine is almost identical to MatFDColoringCreate_MPIBAIJ()! 2059f6d58c54SBarry Smith */ 2060f6d58c54SBarry Smith PetscErrorCode MatFDColoringCreate_MPIBAIJ(Mat mat,ISColoring iscoloring,MatFDColoring c) 2061f6d58c54SBarry Smith { 2062f6d58c54SBarry Smith Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 2063f6d58c54SBarry Smith PetscErrorCode ierr; 2064f6d58c54SBarry Smith PetscMPIInt size,*ncolsonproc,*disp,nn; 2065f6d58c54SBarry Smith PetscInt bs,i,n,nrows,j,k,m,*rows = 0,*A_ci,*A_cj,ncols,col; 2066f6d58c54SBarry Smith const PetscInt *is; 2067f6d58c54SBarry Smith PetscInt nis = iscoloring->n,nctot,*cols,*B_ci,*B_cj; 2068f6d58c54SBarry Smith PetscInt *rowhit,M,cstart,cend,colb; 2069f6d58c54SBarry Smith PetscInt *columnsforrow,l; 2070f6d58c54SBarry Smith IS *isa; 2071f6d58c54SBarry Smith PetscTruth done,flg; 2072f6d58c54SBarry Smith ISLocalToGlobalMapping map = mat->bmapping; 2073f6d58c54SBarry Smith PetscInt *ltog = (map ? map->indices : (PetscInt*) PETSC_NULL) ,ctype=c->ctype; 2074f6d58c54SBarry Smith 2075f6d58c54SBarry Smith PetscFunctionBegin; 2076e7e72b3dSBarry Smith if (!mat->assembled) SETERRQ(((PetscObject)mat)->comm,PETSC_ERR_ARG_WRONGSTATE,"Matrix must be assembled first; MatAssemblyBegin/End();"); 2077e7e72b3dSBarry Smith if (ctype == IS_COLORING_GHOSTED && !map) SETERRQ(((PetscObject)mat)->comm,PETSC_ERR_ARG_INCOMP,"When using ghosted differencing matrix must have local to global mapping provided with MatSetLocalToGlobalMappingBlock"); 2078f6d58c54SBarry Smith 2079f6d58c54SBarry Smith ierr = ISColoringGetIS(iscoloring,PETSC_IGNORE,&isa);CHKERRQ(ierr); 2080f6d58c54SBarry Smith ierr = MatGetBlockSize(mat,&bs);CHKERRQ(ierr); 2081f6d58c54SBarry Smith M = mat->rmap->n/bs; 2082f6d58c54SBarry Smith cstart = mat->cmap->rstart/bs; 2083f6d58c54SBarry Smith cend = mat->cmap->rend/bs; 2084f6d58c54SBarry Smith c->M = mat->rmap->N/bs; /* set the global rows and columns and local rows */ 2085f6d58c54SBarry Smith c->N = mat->cmap->N/bs; 2086f6d58c54SBarry Smith c->m = mat->rmap->n/bs; 2087f6d58c54SBarry Smith c->rstart = mat->rmap->rstart/bs; 2088f6d58c54SBarry Smith 2089f6d58c54SBarry Smith c->ncolors = nis; 2090f6d58c54SBarry Smith ierr = PetscMalloc(nis*sizeof(PetscInt),&c->ncolumns);CHKERRQ(ierr); 2091f6d58c54SBarry Smith ierr = PetscMalloc(nis*sizeof(PetscInt*),&c->columns);CHKERRQ(ierr); 2092f6d58c54SBarry Smith ierr = PetscMalloc(nis*sizeof(PetscInt),&c->nrows);CHKERRQ(ierr); 2093f6d58c54SBarry Smith ierr = PetscMalloc(nis*sizeof(PetscInt*),&c->rows);CHKERRQ(ierr); 2094f6d58c54SBarry Smith ierr = PetscMalloc(nis*sizeof(PetscInt*),&c->columnsforrow);CHKERRQ(ierr); 2095f6d58c54SBarry Smith ierr = PetscLogObjectMemory(c,5*nis*sizeof(PetscInt));CHKERRQ(ierr); 2096f6d58c54SBarry Smith 2097f6d58c54SBarry Smith /* Allow access to data structures of local part of matrix */ 2098f6d58c54SBarry Smith if (!baij->colmap) { 2099f6d58c54SBarry Smith ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 2100f6d58c54SBarry Smith } 2101f6d58c54SBarry Smith ierr = MatGetColumnIJ(baij->A,0,PETSC_FALSE,PETSC_FALSE,&ncols,&A_ci,&A_cj,&done);CHKERRQ(ierr); 2102f6d58c54SBarry Smith ierr = MatGetColumnIJ(baij->B,0,PETSC_FALSE,PETSC_FALSE,&ncols,&B_ci,&B_cj,&done);CHKERRQ(ierr); 2103f6d58c54SBarry Smith 2104f6d58c54SBarry Smith ierr = PetscMalloc((M+1)*sizeof(PetscInt),&rowhit);CHKERRQ(ierr); 2105f6d58c54SBarry Smith ierr = PetscMalloc((M+1)*sizeof(PetscInt),&columnsforrow);CHKERRQ(ierr); 2106f6d58c54SBarry Smith 2107f6d58c54SBarry Smith for (i=0; i<nis; i++) { 2108f6d58c54SBarry Smith ierr = ISGetLocalSize(isa[i],&n);CHKERRQ(ierr); 2109f6d58c54SBarry Smith ierr = ISGetIndices(isa[i],&is);CHKERRQ(ierr); 2110f6d58c54SBarry Smith c->ncolumns[i] = n; 2111f6d58c54SBarry Smith if (n) { 2112f6d58c54SBarry Smith ierr = PetscMalloc(n*sizeof(PetscInt),&c->columns[i]);CHKERRQ(ierr); 2113f6d58c54SBarry Smith ierr = PetscLogObjectMemory(c,n*sizeof(PetscInt));CHKERRQ(ierr); 2114f6d58c54SBarry Smith ierr = PetscMemcpy(c->columns[i],is,n*sizeof(PetscInt));CHKERRQ(ierr); 2115f6d58c54SBarry Smith } else { 2116f6d58c54SBarry Smith c->columns[i] = 0; 2117f6d58c54SBarry Smith } 2118f6d58c54SBarry Smith 2119f6d58c54SBarry Smith if (ctype == IS_COLORING_GLOBAL){ 2120f6d58c54SBarry Smith /* Determine the total (parallel) number of columns of this color */ 2121f6d58c54SBarry Smith ierr = MPI_Comm_size(((PetscObject)mat)->comm,&size);CHKERRQ(ierr); 2122fca92195SBarry Smith ierr = PetscMalloc2(size,PetscMPIInt,&ncolsonproc,size,PetscMPIInt,&disp);CHKERRQ(ierr); 2123f6d58c54SBarry Smith 2124f6d58c54SBarry Smith nn = PetscMPIIntCast(n); 2125f6d58c54SBarry Smith ierr = MPI_Allgather(&nn,1,MPI_INT,ncolsonproc,1,MPI_INT,((PetscObject)mat)->comm);CHKERRQ(ierr); 2126f6d58c54SBarry Smith nctot = 0; for (j=0; j<size; j++) {nctot += ncolsonproc[j];} 2127f6d58c54SBarry Smith if (!nctot) { 2128f6d58c54SBarry Smith ierr = PetscInfo(mat,"Coloring of matrix has some unneeded colors with no corresponding rows\n");CHKERRQ(ierr); 2129f6d58c54SBarry Smith } 2130f6d58c54SBarry Smith 2131f6d58c54SBarry Smith disp[0] = 0; 2132f6d58c54SBarry Smith for (j=1; j<size; j++) { 2133f6d58c54SBarry Smith disp[j] = disp[j-1] + ncolsonproc[j-1]; 2134f6d58c54SBarry Smith } 2135f6d58c54SBarry Smith 2136f6d58c54SBarry Smith /* Get complete list of columns for color on each processor */ 2137f6d58c54SBarry Smith ierr = PetscMalloc((nctot+1)*sizeof(PetscInt),&cols);CHKERRQ(ierr); 2138f6d58c54SBarry Smith ierr = MPI_Allgatherv((void*)is,n,MPIU_INT,cols,ncolsonproc,disp,MPIU_INT,((PetscObject)mat)->comm);CHKERRQ(ierr); 2139fca92195SBarry Smith ierr = PetscFree2(ncolsonproc,disp);CHKERRQ(ierr); 2140f6d58c54SBarry Smith } else if (ctype == IS_COLORING_GHOSTED){ 2141f6d58c54SBarry Smith /* Determine local number of columns of this color on this process, including ghost points */ 2142f6d58c54SBarry Smith nctot = n; 2143f6d58c54SBarry Smith ierr = PetscMalloc((nctot+1)*sizeof(PetscInt),&cols);CHKERRQ(ierr); 2144f6d58c54SBarry Smith ierr = PetscMemcpy(cols,is,n*sizeof(PetscInt));CHKERRQ(ierr); 2145f6d58c54SBarry Smith } else { 2146e32f2f54SBarry Smith SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Not provided for this MatFDColoring type"); 2147f6d58c54SBarry Smith } 2148f6d58c54SBarry Smith 2149f6d58c54SBarry Smith /* 2150f6d58c54SBarry Smith Mark all rows affect by these columns 2151f6d58c54SBarry Smith */ 2152f6d58c54SBarry Smith /* Temporary option to allow for debugging/testing */ 2153f6d58c54SBarry Smith flg = PETSC_FALSE; 2154f6d58c54SBarry Smith ierr = PetscOptionsGetTruth(PETSC_NULL,"-matfdcoloring_slow",&flg,PETSC_NULL);CHKERRQ(ierr); 2155f6d58c54SBarry Smith if (!flg) {/*-----------------------------------------------------------------------------*/ 2156f6d58c54SBarry Smith /* crude, fast version */ 2157f6d58c54SBarry Smith ierr = PetscMemzero(rowhit,M*sizeof(PetscInt));CHKERRQ(ierr); 2158f6d58c54SBarry Smith /* loop over columns*/ 2159f6d58c54SBarry Smith for (j=0; j<nctot; j++) { 2160f6d58c54SBarry Smith if (ctype == IS_COLORING_GHOSTED) { 2161f6d58c54SBarry Smith col = ltog[cols[j]]; 2162f6d58c54SBarry Smith } else { 2163f6d58c54SBarry Smith col = cols[j]; 2164f6d58c54SBarry Smith } 2165f6d58c54SBarry Smith if (col >= cstart && col < cend) { 2166f6d58c54SBarry Smith /* column is in diagonal block of matrix */ 2167f6d58c54SBarry Smith rows = A_cj + A_ci[col-cstart]; 2168f6d58c54SBarry Smith m = A_ci[col-cstart+1] - A_ci[col-cstart]; 2169f6d58c54SBarry Smith } else { 2170f6d58c54SBarry Smith #if defined (PETSC_USE_CTABLE) 2171cb9801acSJed Brown ierr = PetscTableFind(baij->colmap,col+1,&colb);CHKERRQ(ierr); 2172f6d58c54SBarry Smith colb --; 2173f6d58c54SBarry Smith #else 2174f6d58c54SBarry Smith colb = baij->colmap[col] - 1; 2175f6d58c54SBarry Smith #endif 2176f6d58c54SBarry Smith if (colb == -1) { 2177f6d58c54SBarry Smith m = 0; 2178f6d58c54SBarry Smith } else { 2179f6d58c54SBarry Smith colb = colb/bs; 2180f6d58c54SBarry Smith rows = B_cj + B_ci[colb]; 2181f6d58c54SBarry Smith m = B_ci[colb+1] - B_ci[colb]; 2182f6d58c54SBarry Smith } 2183f6d58c54SBarry Smith } 2184f6d58c54SBarry Smith /* loop over columns marking them in rowhit */ 2185f6d58c54SBarry Smith for (k=0; k<m; k++) { 2186f6d58c54SBarry Smith rowhit[*rows++] = col + 1; 2187f6d58c54SBarry Smith } 2188f6d58c54SBarry Smith } 2189f6d58c54SBarry Smith 2190f6d58c54SBarry Smith /* count the number of hits */ 2191f6d58c54SBarry Smith nrows = 0; 2192f6d58c54SBarry Smith for (j=0; j<M; j++) { 2193f6d58c54SBarry Smith if (rowhit[j]) nrows++; 2194f6d58c54SBarry Smith } 2195f6d58c54SBarry Smith c->nrows[i] = nrows; 2196f6d58c54SBarry Smith ierr = PetscMalloc((nrows+1)*sizeof(PetscInt),&c->rows[i]);CHKERRQ(ierr); 2197f6d58c54SBarry Smith ierr = PetscMalloc((nrows+1)*sizeof(PetscInt),&c->columnsforrow[i]);CHKERRQ(ierr); 2198f6d58c54SBarry Smith ierr = PetscLogObjectMemory(c,2*(nrows+1)*sizeof(PetscInt));CHKERRQ(ierr); 2199f6d58c54SBarry Smith nrows = 0; 2200f6d58c54SBarry Smith for (j=0; j<M; j++) { 2201f6d58c54SBarry Smith if (rowhit[j]) { 2202f6d58c54SBarry Smith c->rows[i][nrows] = j; 2203f6d58c54SBarry Smith c->columnsforrow[i][nrows] = rowhit[j] - 1; 2204f6d58c54SBarry Smith nrows++; 2205f6d58c54SBarry Smith } 2206f6d58c54SBarry Smith } 2207f6d58c54SBarry Smith } else {/*-------------------------------------------------------------------------------*/ 2208f6d58c54SBarry Smith /* slow version, using rowhit as a linked list */ 2209f6d58c54SBarry Smith PetscInt currentcol,fm,mfm; 2210f6d58c54SBarry Smith rowhit[M] = M; 2211f6d58c54SBarry Smith nrows = 0; 2212f6d58c54SBarry Smith /* loop over columns*/ 2213f6d58c54SBarry Smith for (j=0; j<nctot; j++) { 2214f6d58c54SBarry Smith if (ctype == IS_COLORING_GHOSTED) { 2215f6d58c54SBarry Smith col = ltog[cols[j]]; 2216f6d58c54SBarry Smith } else { 2217f6d58c54SBarry Smith col = cols[j]; 2218f6d58c54SBarry Smith } 2219f6d58c54SBarry Smith if (col >= cstart && col < cend) { 2220f6d58c54SBarry Smith /* column is in diagonal block of matrix */ 2221f6d58c54SBarry Smith rows = A_cj + A_ci[col-cstart]; 2222f6d58c54SBarry Smith m = A_ci[col-cstart+1] - A_ci[col-cstart]; 2223f6d58c54SBarry Smith } else { 2224f6d58c54SBarry Smith #if defined (PETSC_USE_CTABLE) 2225f6d58c54SBarry Smith ierr = PetscTableFind(baij->colmap,col+1,&colb);CHKERRQ(ierr); 2226f6d58c54SBarry Smith colb --; 2227f6d58c54SBarry Smith #else 2228f6d58c54SBarry Smith colb = baij->colmap[col] - 1; 2229f6d58c54SBarry Smith #endif 2230f6d58c54SBarry Smith if (colb == -1) { 2231f6d58c54SBarry Smith m = 0; 2232f6d58c54SBarry Smith } else { 2233f6d58c54SBarry Smith colb = colb/bs; 2234f6d58c54SBarry Smith rows = B_cj + B_ci[colb]; 2235f6d58c54SBarry Smith m = B_ci[colb+1] - B_ci[colb]; 2236f6d58c54SBarry Smith } 2237f6d58c54SBarry Smith } 2238f6d58c54SBarry Smith 2239f6d58c54SBarry Smith /* loop over columns marking them in rowhit */ 2240f6d58c54SBarry Smith fm = M; /* fm points to first entry in linked list */ 2241f6d58c54SBarry Smith for (k=0; k<m; k++) { 2242f6d58c54SBarry Smith currentcol = *rows++; 2243f6d58c54SBarry Smith /* is it already in the list? */ 2244f6d58c54SBarry Smith do { 2245f6d58c54SBarry Smith mfm = fm; 2246f6d58c54SBarry Smith fm = rowhit[fm]; 2247f6d58c54SBarry Smith } while (fm < currentcol); 2248f6d58c54SBarry Smith /* not in list so add it */ 2249f6d58c54SBarry Smith if (fm != currentcol) { 2250f6d58c54SBarry Smith nrows++; 2251f6d58c54SBarry Smith columnsforrow[currentcol] = col; 2252f6d58c54SBarry Smith /* next three lines insert new entry into linked list */ 2253f6d58c54SBarry Smith rowhit[mfm] = currentcol; 2254f6d58c54SBarry Smith rowhit[currentcol] = fm; 2255f6d58c54SBarry Smith fm = currentcol; 2256f6d58c54SBarry Smith /* fm points to present position in list since we know the columns are sorted */ 2257f6d58c54SBarry Smith } else { 2258e32f2f54SBarry Smith SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Invalid coloring of matrix detected"); 2259f6d58c54SBarry Smith } 2260f6d58c54SBarry Smith } 2261f6d58c54SBarry Smith } 2262f6d58c54SBarry Smith c->nrows[i] = nrows; 2263f6d58c54SBarry Smith ierr = PetscMalloc((nrows+1)*sizeof(PetscInt),&c->rows[i]);CHKERRQ(ierr); 2264f6d58c54SBarry Smith ierr = PetscMalloc((nrows+1)*sizeof(PetscInt),&c->columnsforrow[i]);CHKERRQ(ierr); 2265f6d58c54SBarry Smith ierr = PetscLogObjectMemory(c,(nrows+1)*sizeof(PetscInt));CHKERRQ(ierr); 2266f6d58c54SBarry Smith /* now store the linked list of rows into c->rows[i] */ 2267f6d58c54SBarry Smith nrows = 0; 2268f6d58c54SBarry Smith fm = rowhit[M]; 2269f6d58c54SBarry Smith do { 2270f6d58c54SBarry Smith c->rows[i][nrows] = fm; 2271f6d58c54SBarry Smith c->columnsforrow[i][nrows++] = columnsforrow[fm]; 2272f6d58c54SBarry Smith fm = rowhit[fm]; 2273f6d58c54SBarry Smith } while (fm < M); 2274f6d58c54SBarry Smith } /* ---------------------------------------------------------------------------------------*/ 2275f6d58c54SBarry Smith ierr = PetscFree(cols);CHKERRQ(ierr); 2276f6d58c54SBarry Smith } 2277f6d58c54SBarry Smith 2278f6d58c54SBarry Smith /* Optimize by adding the vscale, and scaleforrow[][] fields */ 2279f6d58c54SBarry Smith /* 2280f6d58c54SBarry Smith vscale will contain the "diagonal" on processor scalings followed by the off processor 2281f6d58c54SBarry Smith */ 2282f6d58c54SBarry Smith if (ctype == IS_COLORING_GLOBAL) { 2283f6d58c54SBarry Smith PetscInt *garray; 2284f6d58c54SBarry Smith ierr = PetscMalloc(baij->B->cmap->n*sizeof(PetscInt),&garray);CHKERRQ(ierr); 2285f6d58c54SBarry Smith for (i=0; i<baij->B->cmap->n/bs; i++) { 2286f6d58c54SBarry Smith for (j=0; j<bs; j++) { 2287f6d58c54SBarry Smith garray[i*bs+j] = bs*baij->garray[i]+j; 2288f6d58c54SBarry Smith } 2289f6d58c54SBarry Smith } 2290f6d58c54SBarry Smith ierr = VecCreateGhost(((PetscObject)mat)->comm,baij->A->rmap->n,PETSC_DETERMINE,baij->B->cmap->n,garray,&c->vscale);CHKERRQ(ierr); 2291f6d58c54SBarry Smith ierr = PetscFree(garray);CHKERRQ(ierr); 2292f6d58c54SBarry Smith CHKMEMQ; 2293f6d58c54SBarry Smith ierr = PetscMalloc(c->ncolors*sizeof(PetscInt*),&c->vscaleforrow);CHKERRQ(ierr); 2294f6d58c54SBarry Smith for (k=0; k<c->ncolors; k++) { 2295f6d58c54SBarry Smith ierr = PetscMalloc((c->nrows[k]+1)*sizeof(PetscInt),&c->vscaleforrow[k]);CHKERRQ(ierr); 2296f6d58c54SBarry Smith for (l=0; l<c->nrows[k]; l++) { 2297f6d58c54SBarry Smith col = c->columnsforrow[k][l]; 2298f6d58c54SBarry Smith if (col >= cstart && col < cend) { 2299f6d58c54SBarry Smith /* column is in diagonal block of matrix */ 2300f6d58c54SBarry Smith colb = col - cstart; 2301f6d58c54SBarry Smith } else { 2302f6d58c54SBarry Smith /* column is in "off-processor" part */ 2303f6d58c54SBarry Smith #if defined (PETSC_USE_CTABLE) 2304f6d58c54SBarry Smith ierr = PetscTableFind(baij->colmap,col+1,&colb);CHKERRQ(ierr); 2305f6d58c54SBarry Smith colb --; 2306f6d58c54SBarry Smith #else 2307f6d58c54SBarry Smith colb = baij->colmap[col] - 1; 2308f6d58c54SBarry Smith #endif 2309f6d58c54SBarry Smith colb = colb/bs; 2310f6d58c54SBarry Smith colb += cend - cstart; 2311f6d58c54SBarry Smith } 2312f6d58c54SBarry Smith c->vscaleforrow[k][l] = colb; 2313f6d58c54SBarry Smith } 2314f6d58c54SBarry Smith } 2315f6d58c54SBarry Smith } else if (ctype == IS_COLORING_GHOSTED) { 2316f6d58c54SBarry Smith /* Get gtol mapping */ 2317f6d58c54SBarry Smith PetscInt N = mat->cmap->N, *gtol; 2318f6d58c54SBarry Smith ierr = PetscMalloc((N+1)*sizeof(PetscInt),>ol);CHKERRQ(ierr); 2319f6d58c54SBarry Smith for (i=0; i<N; i++) gtol[i] = -1; 2320f6d58c54SBarry Smith for (i=0; i<map->n; i++) gtol[ltog[i]] = i; 2321f6d58c54SBarry Smith 2322f6d58c54SBarry Smith c->vscale = 0; /* will be created in MatFDColoringApply() */ 2323f6d58c54SBarry Smith ierr = PetscMalloc(c->ncolors*sizeof(PetscInt*),&c->vscaleforrow);CHKERRQ(ierr); 2324f6d58c54SBarry Smith for (k=0; k<c->ncolors; k++) { 2325f6d58c54SBarry Smith ierr = PetscMalloc((c->nrows[k]+1)*sizeof(PetscInt),&c->vscaleforrow[k]);CHKERRQ(ierr); 2326f6d58c54SBarry Smith for (l=0; l<c->nrows[k]; l++) { 2327f6d58c54SBarry Smith col = c->columnsforrow[k][l]; /* global column index */ 2328f6d58c54SBarry Smith c->vscaleforrow[k][l] = gtol[col]; /* local column index */ 2329f6d58c54SBarry Smith } 2330f6d58c54SBarry Smith } 2331f6d58c54SBarry Smith ierr = PetscFree(gtol);CHKERRQ(ierr); 2332f6d58c54SBarry Smith } 2333f6d58c54SBarry Smith ierr = ISColoringRestoreIS(iscoloring,&isa);CHKERRQ(ierr); 2334f6d58c54SBarry Smith 2335f6d58c54SBarry Smith ierr = PetscFree(rowhit);CHKERRQ(ierr); 2336f6d58c54SBarry Smith ierr = PetscFree(columnsforrow);CHKERRQ(ierr); 2337f6d58c54SBarry Smith ierr = MatRestoreColumnIJ(baij->A,0,PETSC_FALSE,PETSC_FALSE,&ncols,&A_ci,&A_cj,&done);CHKERRQ(ierr); 2338f6d58c54SBarry Smith ierr = MatRestoreColumnIJ(baij->B,0,PETSC_FALSE,PETSC_FALSE,&ncols,&B_ci,&B_cj,&done);CHKERRQ(ierr); 2339f6d58c54SBarry Smith CHKMEMQ; 2340f6d58c54SBarry Smith PetscFunctionReturn(0); 2341f6d58c54SBarry Smith } 2342f6d58c54SBarry Smith 2343f6d58c54SBarry Smith #undef __FUNCT__ 2344f6d58c54SBarry Smith #define __FUNCT__ "MatGetSeqNonzerostructure_MPIBAIJ" 2345f6d58c54SBarry Smith PetscErrorCode MatGetSeqNonzerostructure_MPIBAIJ(Mat A,Mat *newmat) 2346f6d58c54SBarry Smith { 2347f6d58c54SBarry Smith Mat B; 2348f6d58c54SBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 2349f6d58c54SBarry Smith Mat_SeqBAIJ *ad = (Mat_SeqBAIJ*)a->A->data,*bd = (Mat_SeqBAIJ*)a->B->data; 2350f6d58c54SBarry Smith Mat_SeqAIJ *b; 2351f6d58c54SBarry Smith PetscErrorCode ierr; 2352f6d58c54SBarry Smith PetscMPIInt size,rank,*recvcounts = 0,*displs = 0; 2353f6d58c54SBarry Smith PetscInt sendcount,i,*rstarts = A->rmap->range,n,cnt,j,bs = A->rmap->bs; 2354f6d58c54SBarry Smith PetscInt m,*garray = a->garray,*lens,*jsendbuf,*a_jsendbuf,*b_jsendbuf; 2355f6d58c54SBarry Smith 2356f6d58c54SBarry Smith PetscFunctionBegin; 2357f6d58c54SBarry Smith ierr = MPI_Comm_size(((PetscObject)A)->comm,&size);CHKERRQ(ierr); 2358f6d58c54SBarry Smith ierr = MPI_Comm_rank(((PetscObject)A)->comm,&rank);CHKERRQ(ierr); 2359f6d58c54SBarry Smith 2360f6d58c54SBarry Smith /* ---------------------------------------------------------------- 2361f6d58c54SBarry Smith Tell every processor the number of nonzeros per row 2362f6d58c54SBarry Smith */ 2363f6d58c54SBarry Smith ierr = PetscMalloc((A->rmap->N/bs)*sizeof(PetscInt),&lens);CHKERRQ(ierr); 2364f6d58c54SBarry Smith for (i=A->rmap->rstart/bs; i<A->rmap->rend/bs; i++) { 2365f6d58c54SBarry Smith lens[i] = ad->i[i-A->rmap->rstart/bs+1] - ad->i[i-A->rmap->rstart/bs] + bd->i[i-A->rmap->rstart/bs+1] - bd->i[i-A->rmap->rstart/bs]; 2366f6d58c54SBarry Smith } 2367f6d58c54SBarry Smith sendcount = A->rmap->rend/bs - A->rmap->rstart/bs; 2368f6d58c54SBarry Smith ierr = PetscMalloc(2*size*sizeof(PetscMPIInt),&recvcounts);CHKERRQ(ierr); 2369f6d58c54SBarry Smith displs = recvcounts + size; 2370f6d58c54SBarry Smith for (i=0; i<size; i++) { 2371f6d58c54SBarry Smith recvcounts[i] = A->rmap->range[i+1]/bs - A->rmap->range[i]/bs; 2372f6d58c54SBarry Smith displs[i] = A->rmap->range[i]/bs; 2373f6d58c54SBarry Smith } 2374f6d58c54SBarry Smith #if defined(PETSC_HAVE_MPI_IN_PLACE) 2375f6d58c54SBarry Smith ierr = MPI_Allgatherv(MPI_IN_PLACE,0,MPI_DATATYPE_NULL,lens,recvcounts,displs,MPIU_INT,((PetscObject)A)->comm);CHKERRQ(ierr); 2376f6d58c54SBarry Smith #else 2377f6d58c54SBarry Smith ierr = MPI_Allgatherv(lens+A->rmap->rstart/bs,sendcount,MPIU_INT,lens,recvcounts,displs,MPIU_INT,((PetscObject)A)->comm);CHKERRQ(ierr); 2378f6d58c54SBarry Smith #endif 2379f6d58c54SBarry Smith /* --------------------------------------------------------------- 2380f6d58c54SBarry Smith Create the sequential matrix of the same type as the local block diagonal 2381f6d58c54SBarry Smith */ 2382f6d58c54SBarry Smith ierr = MatCreate(PETSC_COMM_SELF,&B);CHKERRQ(ierr); 2383f6d58c54SBarry Smith ierr = MatSetSizes(B,A->rmap->N/bs,A->cmap->N/bs,PETSC_DETERMINE,PETSC_DETERMINE);CHKERRQ(ierr); 2384f6d58c54SBarry Smith ierr = MatSetType(B,MATSEQAIJ);CHKERRQ(ierr); 2385f6d58c54SBarry Smith ierr = MatSeqAIJSetPreallocation(B,0,lens);CHKERRQ(ierr); 2386f6d58c54SBarry Smith b = (Mat_SeqAIJ *)B->data; 2387f6d58c54SBarry Smith 2388f6d58c54SBarry Smith /*-------------------------------------------------------------------- 2389f6d58c54SBarry Smith Copy my part of matrix column indices over 2390f6d58c54SBarry Smith */ 2391f6d58c54SBarry Smith sendcount = ad->nz + bd->nz; 2392f6d58c54SBarry Smith jsendbuf = b->j + b->i[rstarts[rank]/bs]; 2393f6d58c54SBarry Smith a_jsendbuf = ad->j; 2394f6d58c54SBarry Smith b_jsendbuf = bd->j; 2395f6d58c54SBarry Smith n = A->rmap->rend/bs - A->rmap->rstart/bs; 2396f6d58c54SBarry Smith cnt = 0; 2397f6d58c54SBarry Smith for (i=0; i<n; i++) { 2398f6d58c54SBarry Smith 2399f6d58c54SBarry Smith /* put in lower diagonal portion */ 2400f6d58c54SBarry Smith m = bd->i[i+1] - bd->i[i]; 2401f6d58c54SBarry Smith while (m > 0) { 2402f6d58c54SBarry Smith /* is it above diagonal (in bd (compressed) numbering) */ 2403f6d58c54SBarry Smith if (garray[*b_jsendbuf] > A->rmap->rstart/bs + i) break; 2404f6d58c54SBarry Smith jsendbuf[cnt++] = garray[*b_jsendbuf++]; 2405f6d58c54SBarry Smith m--; 2406f6d58c54SBarry Smith } 2407f6d58c54SBarry Smith 2408f6d58c54SBarry Smith /* put in diagonal portion */ 2409f6d58c54SBarry Smith for (j=ad->i[i]; j<ad->i[i+1]; j++) { 2410f6d58c54SBarry Smith jsendbuf[cnt++] = A->rmap->rstart/bs + *a_jsendbuf++; 2411f6d58c54SBarry Smith } 2412f6d58c54SBarry Smith 2413f6d58c54SBarry Smith /* put in upper diagonal portion */ 2414f6d58c54SBarry Smith while (m-- > 0) { 2415f6d58c54SBarry Smith jsendbuf[cnt++] = garray[*b_jsendbuf++]; 2416f6d58c54SBarry Smith } 2417f6d58c54SBarry Smith } 2418e32f2f54SBarry Smith if (cnt != sendcount) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Corrupted PETSc matrix: nz given %D actual nz %D",sendcount,cnt); 2419f6d58c54SBarry Smith 2420f6d58c54SBarry Smith /*-------------------------------------------------------------------- 2421f6d58c54SBarry Smith Gather all column indices to all processors 2422f6d58c54SBarry Smith */ 2423f6d58c54SBarry Smith for (i=0; i<size; i++) { 2424f6d58c54SBarry Smith recvcounts[i] = 0; 2425f6d58c54SBarry Smith for (j=A->rmap->range[i]/bs; j<A->rmap->range[i+1]/bs; j++) { 2426f6d58c54SBarry Smith recvcounts[i] += lens[j]; 2427f6d58c54SBarry Smith } 2428f6d58c54SBarry Smith } 2429f6d58c54SBarry Smith displs[0] = 0; 2430f6d58c54SBarry Smith for (i=1; i<size; i++) { 2431f6d58c54SBarry Smith displs[i] = displs[i-1] + recvcounts[i-1]; 2432f6d58c54SBarry Smith } 2433f6d58c54SBarry Smith #if defined(PETSC_HAVE_MPI_IN_PLACE) 2434f6d58c54SBarry Smith ierr = MPI_Allgatherv(MPI_IN_PLACE,0,MPI_DATATYPE_NULL,b->j,recvcounts,displs,MPIU_INT,((PetscObject)A)->comm);CHKERRQ(ierr); 2435f6d58c54SBarry Smith #else 2436f6d58c54SBarry Smith ierr = MPI_Allgatherv(jsendbuf,sendcount,MPIU_INT,b->j,recvcounts,displs,MPIU_INT,((PetscObject)A)->comm);CHKERRQ(ierr); 2437f6d58c54SBarry Smith #endif 2438f6d58c54SBarry Smith /*-------------------------------------------------------------------- 2439f6d58c54SBarry Smith Assemble the matrix into useable form (note numerical values not yet set) 2440f6d58c54SBarry Smith */ 2441f6d58c54SBarry Smith /* set the b->ilen (length of each row) values */ 2442f6d58c54SBarry Smith ierr = PetscMemcpy(b->ilen,lens,(A->rmap->N/bs)*sizeof(PetscInt));CHKERRQ(ierr); 2443f6d58c54SBarry Smith /* set the b->i indices */ 2444f6d58c54SBarry Smith b->i[0] = 0; 2445f6d58c54SBarry Smith for (i=1; i<=A->rmap->N/bs; i++) { 2446f6d58c54SBarry Smith b->i[i] = b->i[i-1] + lens[i-1]; 2447f6d58c54SBarry Smith } 2448f6d58c54SBarry Smith ierr = PetscFree(lens);CHKERRQ(ierr); 2449f6d58c54SBarry Smith ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 2450f6d58c54SBarry Smith ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 2451f6d58c54SBarry Smith ierr = PetscFree(recvcounts);CHKERRQ(ierr); 2452f6d58c54SBarry Smith 2453f6d58c54SBarry Smith if (A->symmetric){ 2454f6d58c54SBarry Smith ierr = MatSetOption(B,MAT_SYMMETRIC,PETSC_TRUE);CHKERRQ(ierr); 2455f6d58c54SBarry Smith } else if (A->hermitian) { 2456f6d58c54SBarry Smith ierr = MatSetOption(B,MAT_HERMITIAN,PETSC_TRUE);CHKERRQ(ierr); 2457f6d58c54SBarry Smith } else if (A->structurally_symmetric) { 2458f6d58c54SBarry Smith ierr = MatSetOption(B,MAT_STRUCTURALLY_SYMMETRIC,PETSC_TRUE);CHKERRQ(ierr); 2459f6d58c54SBarry Smith } 2460f6d58c54SBarry Smith *newmat = B; 2461f6d58c54SBarry Smith PetscFunctionReturn(0); 2462f6d58c54SBarry Smith } 2463f6d58c54SBarry Smith 2464b1a666ecSBarry Smith #undef __FUNCT__ 2465b1a666ecSBarry Smith #define __FUNCT__ "MatSOR_MPIBAIJ" 2466b1a666ecSBarry Smith PetscErrorCode MatSOR_MPIBAIJ(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx) 2467b1a666ecSBarry Smith { 2468b1a666ecSBarry Smith Mat_MPIBAIJ *mat = (Mat_MPIBAIJ*)matin->data; 2469b1a666ecSBarry Smith PetscErrorCode ierr; 2470b1a666ecSBarry Smith Vec bb1 = 0; 2471b1a666ecSBarry Smith 2472b1a666ecSBarry Smith PetscFunctionBegin; 2473b1a666ecSBarry Smith if (its > 1 || ~flag & SOR_ZERO_INITIAL_GUESS) { 2474b1a666ecSBarry Smith ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr); 2475b1a666ecSBarry Smith } 2476b1a666ecSBarry Smith 2477b1a666ecSBarry Smith if (flag == SOR_APPLY_UPPER) { 2478b1a666ecSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr); 2479b1a666ecSBarry Smith PetscFunctionReturn(0); 2480b1a666ecSBarry Smith } 2481b1a666ecSBarry Smith 2482b1a666ecSBarry Smith if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP){ 2483b1a666ecSBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 2484b1a666ecSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr); 2485b1a666ecSBarry Smith its--; 2486b1a666ecSBarry Smith } 2487b1a666ecSBarry Smith 2488b1a666ecSBarry Smith while (its--) { 2489b1a666ecSBarry Smith ierr = VecScatterBegin(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 2490b1a666ecSBarry Smith ierr = VecScatterEnd(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 2491b1a666ecSBarry Smith 2492b1a666ecSBarry Smith /* update rhs: bb1 = bb - B*x */ 2493b1a666ecSBarry Smith ierr = VecScale(mat->lvec,-1.0);CHKERRQ(ierr); 2494b1a666ecSBarry Smith ierr = (*mat->B->ops->multadd)(mat->B,mat->lvec,bb,bb1);CHKERRQ(ierr); 2495b1a666ecSBarry Smith 2496b1a666ecSBarry Smith /* local sweep */ 2497b1a666ecSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,1,xx);CHKERRQ(ierr); 2498b1a666ecSBarry Smith } 2499b1a666ecSBarry Smith } else if (flag & SOR_LOCAL_FORWARD_SWEEP){ 2500b1a666ecSBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 2501b1a666ecSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr); 2502b1a666ecSBarry Smith its--; 2503b1a666ecSBarry Smith } 2504b1a666ecSBarry Smith while (its--) { 2505b1a666ecSBarry Smith ierr = VecScatterBegin(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 2506b1a666ecSBarry Smith ierr = VecScatterEnd(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 2507b1a666ecSBarry Smith 2508b1a666ecSBarry Smith /* update rhs: bb1 = bb - B*x */ 2509b1a666ecSBarry Smith ierr = VecScale(mat->lvec,-1.0);CHKERRQ(ierr); 2510b1a666ecSBarry Smith ierr = (*mat->B->ops->multadd)(mat->B,mat->lvec,bb,bb1);CHKERRQ(ierr); 2511b1a666ecSBarry Smith 2512b1a666ecSBarry Smith /* local sweep */ 2513b1a666ecSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_FORWARD_SWEEP,fshift,lits,1,xx);CHKERRQ(ierr); 2514b1a666ecSBarry Smith } 2515b1a666ecSBarry Smith } else if (flag & SOR_LOCAL_BACKWARD_SWEEP){ 2516b1a666ecSBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 2517b1a666ecSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr); 2518b1a666ecSBarry Smith its--; 2519b1a666ecSBarry Smith } 2520b1a666ecSBarry Smith while (its--) { 2521b1a666ecSBarry Smith ierr = VecScatterBegin(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 2522b1a666ecSBarry Smith ierr = VecScatterEnd(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 2523b1a666ecSBarry Smith 2524b1a666ecSBarry Smith /* update rhs: bb1 = bb - B*x */ 2525b1a666ecSBarry Smith ierr = VecScale(mat->lvec,-1.0);CHKERRQ(ierr); 2526b1a666ecSBarry Smith ierr = (*mat->B->ops->multadd)(mat->B,mat->lvec,bb,bb1);CHKERRQ(ierr); 2527b1a666ecSBarry Smith 2528b1a666ecSBarry Smith /* local sweep */ 2529b1a666ecSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_BACKWARD_SWEEP,fshift,lits,1,xx);CHKERRQ(ierr); 2530b1a666ecSBarry Smith } 2531e7e72b3dSBarry Smith } else SETERRQ(((PetscObject)matin)->comm,PETSC_ERR_SUP,"Parallel version of SOR requested not supported"); 2532b1a666ecSBarry Smith 2533b1a666ecSBarry Smith if (bb1) {ierr = VecDestroy(bb1);CHKERRQ(ierr);} 2534b1a666ecSBarry Smith PetscFunctionReturn(0); 2535b1a666ecSBarry Smith } 2536b1a666ecSBarry Smith 2537f6d58c54SBarry Smith extern PetscErrorCode PETSCMAT_DLLEXPORT MatFDColoringApply_BAIJ(Mat,MatFDColoring,Vec,MatStructure*,void*); 2538f6d58c54SBarry Smith 25398c7482ecSBarry Smith 254079bdfe76SSatish Balay /* -------------------------------------------------------------------*/ 2541cc2dc46cSBarry Smith static struct _MatOps MatOps_Values = { 2542cc2dc46cSBarry Smith MatSetValues_MPIBAIJ, 2543cc2dc46cSBarry Smith MatGetRow_MPIBAIJ, 2544cc2dc46cSBarry Smith MatRestoreRow_MPIBAIJ, 2545cc2dc46cSBarry Smith MatMult_MPIBAIJ, 254697304618SKris Buschelman /* 4*/ MatMultAdd_MPIBAIJ, 25477c922b88SBarry Smith MatMultTranspose_MPIBAIJ, 25487c922b88SBarry Smith MatMultTransposeAdd_MPIBAIJ, 2549cc2dc46cSBarry Smith 0, 2550cc2dc46cSBarry Smith 0, 2551cc2dc46cSBarry Smith 0, 255297304618SKris Buschelman /*10*/ 0, 2553cc2dc46cSBarry Smith 0, 2554cc2dc46cSBarry Smith 0, 2555b1a666ecSBarry Smith MatSOR_MPIBAIJ, 2556cc2dc46cSBarry Smith MatTranspose_MPIBAIJ, 255797304618SKris Buschelman /*15*/ MatGetInfo_MPIBAIJ, 25587fc3c18eSBarry Smith MatEqual_MPIBAIJ, 2559cc2dc46cSBarry Smith MatGetDiagonal_MPIBAIJ, 2560cc2dc46cSBarry Smith MatDiagonalScale_MPIBAIJ, 2561cc2dc46cSBarry Smith MatNorm_MPIBAIJ, 256297304618SKris Buschelman /*20*/ MatAssemblyBegin_MPIBAIJ, 2563cc2dc46cSBarry Smith MatAssemblyEnd_MPIBAIJ, 2564cc2dc46cSBarry Smith MatSetOption_MPIBAIJ, 2565cc2dc46cSBarry Smith MatZeroEntries_MPIBAIJ, 2566d519adbfSMatthew Knepley /*24*/ MatZeroRows_MPIBAIJ, 2567cc2dc46cSBarry Smith 0, 2568cc2dc46cSBarry Smith 0, 2569cc2dc46cSBarry Smith 0, 2570cc2dc46cSBarry Smith 0, 2571d519adbfSMatthew Knepley /*29*/ MatSetUpPreallocation_MPIBAIJ, 2572273d9f13SBarry Smith 0, 2573cc2dc46cSBarry Smith 0, 2574cc2dc46cSBarry Smith 0, 2575cc2dc46cSBarry Smith 0, 2576d519adbfSMatthew Knepley /*34*/ MatDuplicate_MPIBAIJ, 2577cc2dc46cSBarry Smith 0, 2578cc2dc46cSBarry Smith 0, 2579cc2dc46cSBarry Smith 0, 2580cc2dc46cSBarry Smith 0, 2581d519adbfSMatthew Knepley /*39*/ MatAXPY_MPIBAIJ, 2582cc2dc46cSBarry Smith MatGetSubMatrices_MPIBAIJ, 2583cc2dc46cSBarry Smith MatIncreaseOverlap_MPIBAIJ, 2584cc2dc46cSBarry Smith MatGetValues_MPIBAIJ, 25853c896bc6SHong Zhang MatCopy_MPIBAIJ, 2586d519adbfSMatthew Knepley /*44*/ 0, 2587cc2dc46cSBarry Smith MatScale_MPIBAIJ, 2588cc2dc46cSBarry Smith 0, 2589cc2dc46cSBarry Smith 0, 2590cc2dc46cSBarry Smith 0, 259141c166b1SJed Brown /*49*/ MatSetBlockSize_MPIBAIJ, 2592cc2dc46cSBarry Smith 0, 2593cc2dc46cSBarry Smith 0, 2594cc2dc46cSBarry Smith 0, 2595cc2dc46cSBarry Smith 0, 2596f6d58c54SBarry Smith /*54*/ MatFDColoringCreate_MPIBAIJ, 2597cc2dc46cSBarry Smith 0, 2598cc2dc46cSBarry Smith MatSetUnfactored_MPIBAIJ, 259982094794SBarry Smith MatPermute_MPIBAIJ, 2600cc2dc46cSBarry Smith MatSetValuesBlocked_MPIBAIJ, 2601d519adbfSMatthew Knepley /*59*/ MatGetSubMatrix_MPIBAIJ, 2602f14a1c24SBarry Smith MatDestroy_MPIBAIJ, 2603f14a1c24SBarry Smith MatView_MPIBAIJ, 2604357abbc8SBarry Smith 0, 26057843d17aSBarry Smith 0, 2606d519adbfSMatthew Knepley /*64*/ 0, 26077843d17aSBarry Smith 0, 26087843d17aSBarry Smith 0, 26097843d17aSBarry Smith 0, 26107843d17aSBarry Smith 0, 2611d519adbfSMatthew Knepley /*69*/ MatGetRowMaxAbs_MPIBAIJ, 26127843d17aSBarry Smith 0, 261397304618SKris Buschelman 0, 261497304618SKris Buschelman 0, 261597304618SKris Buschelman 0, 2616d519adbfSMatthew Knepley /*74*/ 0, 2617f6d58c54SBarry Smith MatFDColoringApply_BAIJ, 261897304618SKris Buschelman 0, 261997304618SKris Buschelman 0, 262097304618SKris Buschelman 0, 2621d519adbfSMatthew Knepley /*79*/ 0, 262297304618SKris Buschelman 0, 262397304618SKris Buschelman 0, 262497304618SKris Buschelman 0, 2625865e5f61SKris Buschelman MatLoad_MPIBAIJ, 2626d519adbfSMatthew Knepley /*84*/ 0, 2627865e5f61SKris Buschelman 0, 2628865e5f61SKris Buschelman 0, 2629865e5f61SKris Buschelman 0, 2630865e5f61SKris Buschelman 0, 2631d519adbfSMatthew Knepley /*89*/ 0, 2632865e5f61SKris Buschelman 0, 2633865e5f61SKris Buschelman 0, 2634865e5f61SKris Buschelman 0, 2635865e5f61SKris Buschelman 0, 2636d519adbfSMatthew Knepley /*94*/ 0, 2637865e5f61SKris Buschelman 0, 2638865e5f61SKris Buschelman 0, 263999cafbc1SBarry Smith 0, 264099cafbc1SBarry Smith 0, 2641d519adbfSMatthew Knepley /*99*/ 0, 264299cafbc1SBarry Smith 0, 264399cafbc1SBarry Smith 0, 264499cafbc1SBarry Smith 0, 264599cafbc1SBarry Smith 0, 2646d519adbfSMatthew Knepley /*104*/0, 264799cafbc1SBarry Smith MatRealPart_MPIBAIJ, 26488c7482ecSBarry Smith MatImaginaryPart_MPIBAIJ, 26498c7482ecSBarry Smith 0, 26508c7482ecSBarry Smith 0, 2651d519adbfSMatthew Knepley /*109*/0, 26528c7482ecSBarry Smith 0, 26538c7482ecSBarry Smith 0, 26548c7482ecSBarry Smith 0, 26558c7482ecSBarry Smith 0, 2656f6d58c54SBarry Smith /*114*/MatGetSeqNonzerostructure_MPIBAIJ, 26578c7482ecSBarry Smith 0, 26588c7482ecSBarry Smith MatGetGhosts_MPIBAIJ 26598c7482ecSBarry Smith }; 266079bdfe76SSatish Balay 2661e18c124aSSatish Balay EXTERN_C_BEGIN 26624a2ae208SSatish Balay #undef __FUNCT__ 26634a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonalBlock_MPIBAIJ" 2664be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatGetDiagonalBlock_MPIBAIJ(Mat A,PetscTruth *iscopy,MatReuse reuse,Mat *a) 26655ef9f2a5SBarry Smith { 26665ef9f2a5SBarry Smith PetscFunctionBegin; 26675ef9f2a5SBarry Smith *a = ((Mat_MPIBAIJ *)A->data)->A; 26685ef9f2a5SBarry Smith *iscopy = PETSC_FALSE; 26695ef9f2a5SBarry Smith PetscFunctionReturn(0); 26705ef9f2a5SBarry Smith } 2671e18c124aSSatish Balay EXTERN_C_END 267279bdfe76SSatish Balay 2673273d9f13SBarry Smith EXTERN_C_BEGIN 2674f69a0ea3SMatthew Knepley extern PetscErrorCode PETSCMAT_DLLEXPORT MatConvert_MPIBAIJ_MPISBAIJ(Mat, MatType,MatReuse,Mat*); 2675d94109b8SHong Zhang EXTERN_C_END 2676d94109b8SHong Zhang 2677b8d659d7SLisandro Dalcin EXTERN_C_BEGIN 2678aac34f13SBarry Smith #undef __FUNCT__ 2679aac34f13SBarry Smith #define __FUNCT__ "MatMPIBAIJSetPreallocationCSR_MPIBAIJ" 2680cf12db73SBarry Smith PetscErrorCode MatMPIBAIJSetPreallocationCSR_MPIBAIJ(Mat B,PetscInt bs,const PetscInt ii[],const PetscInt jj[],const PetscScalar V[]) 2681aac34f13SBarry Smith { 2682b8d659d7SLisandro Dalcin PetscInt m,rstart,cstart,cend; 2683b8d659d7SLisandro Dalcin PetscInt i,j,d,nz,nz_max=0,*d_nnz=0,*o_nnz=0; 2684b8d659d7SLisandro Dalcin const PetscInt *JJ=0; 2685b8d659d7SLisandro Dalcin PetscScalar *values=0; 2686aac34f13SBarry Smith PetscErrorCode ierr; 2687aac34f13SBarry Smith 2688aac34f13SBarry Smith PetscFunctionBegin; 2689b8d659d7SLisandro Dalcin 269065e19b50SBarry Smith if (bs < 1) SETERRQ1(((PetscObject)B)->comm,PETSC_ERR_ARG_OUTOFRANGE,"Invalid block size specified, must be positive but it is %D",bs); 269126283091SBarry Smith ierr = PetscLayoutSetBlockSize(B->rmap,bs);CHKERRQ(ierr); 269226283091SBarry Smith ierr = PetscLayoutSetBlockSize(B->cmap,bs);CHKERRQ(ierr); 269326283091SBarry Smith ierr = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr); 269426283091SBarry Smith ierr = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr); 2695d0f46423SBarry Smith m = B->rmap->n/bs; 2696d0f46423SBarry Smith rstart = B->rmap->rstart/bs; 2697d0f46423SBarry Smith cstart = B->cmap->rstart/bs; 2698d0f46423SBarry Smith cend = B->cmap->rend/bs; 2699b8d659d7SLisandro Dalcin 2700e32f2f54SBarry Smith if (ii[0]) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"ii[0] must be 0 but it is %D",ii[0]); 2701fca92195SBarry Smith ierr = PetscMalloc2(m,PetscInt,&d_nnz,m,PetscInt,&o_nnz);CHKERRQ(ierr); 2702aac34f13SBarry Smith for (i=0; i<m; i++) { 2703cf12db73SBarry Smith nz = ii[i+1] - ii[i]; 2704e32f2f54SBarry Smith if (nz < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Local row %D has a negative number of columns %D",i,nz); 2705b8d659d7SLisandro Dalcin nz_max = PetscMax(nz_max,nz); 2706cf12db73SBarry Smith JJ = jj + ii[i]; 2707b8d659d7SLisandro Dalcin for (j=0; j<nz; j++) { 2708aac34f13SBarry Smith if (*JJ >= cstart) break; 2709aac34f13SBarry Smith JJ++; 2710aac34f13SBarry Smith } 2711aac34f13SBarry Smith d = 0; 2712b8d659d7SLisandro Dalcin for (; j<nz; j++) { 2713aac34f13SBarry Smith if (*JJ++ >= cend) break; 2714aac34f13SBarry Smith d++; 2715aac34f13SBarry Smith } 2716aac34f13SBarry Smith d_nnz[i] = d; 2717b8d659d7SLisandro Dalcin o_nnz[i] = nz - d; 2718aac34f13SBarry Smith } 2719aac34f13SBarry Smith ierr = MatMPIBAIJSetPreallocation(B,bs,0,d_nnz,0,o_nnz);CHKERRQ(ierr); 2720fca92195SBarry Smith ierr = PetscFree2(d_nnz,o_nnz);CHKERRQ(ierr); 2721aac34f13SBarry Smith 2722b8d659d7SLisandro Dalcin values = (PetscScalar*)V; 2723b8d659d7SLisandro Dalcin if (!values) { 2724fca92195SBarry Smith ierr = PetscMalloc(bs*bs*nz_max*sizeof(PetscScalar),&values);CHKERRQ(ierr); 2725b8d659d7SLisandro Dalcin ierr = PetscMemzero(values,bs*bs*nz_max*sizeof(PetscScalar));CHKERRQ(ierr); 2726b8d659d7SLisandro Dalcin } 2727b8d659d7SLisandro Dalcin for (i=0; i<m; i++) { 2728b8d659d7SLisandro Dalcin PetscInt row = i + rstart; 2729cf12db73SBarry Smith PetscInt ncols = ii[i+1] - ii[i]; 2730cf12db73SBarry Smith const PetscInt *icols = jj + ii[i]; 2731cf12db73SBarry Smith const PetscScalar *svals = values + (V ? (bs*bs*ii[i]) : 0); 2732b8d659d7SLisandro Dalcin ierr = MatSetValuesBlocked_MPIBAIJ(B,1,&row,ncols,icols,svals,INSERT_VALUES);CHKERRQ(ierr); 2733aac34f13SBarry Smith } 2734aac34f13SBarry Smith 2735b8d659d7SLisandro Dalcin if (!V) { ierr = PetscFree(values);CHKERRQ(ierr); } 2736aac34f13SBarry Smith ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 2737aac34f13SBarry Smith ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 2738aac34f13SBarry Smith 2739aac34f13SBarry Smith PetscFunctionReturn(0); 2740aac34f13SBarry Smith } 2741b8d659d7SLisandro Dalcin EXTERN_C_END 2742aac34f13SBarry Smith 2743aac34f13SBarry Smith #undef __FUNCT__ 2744aac34f13SBarry Smith #define __FUNCT__ "MatMPIBAIJSetPreallocationCSR" 2745aac34f13SBarry Smith /*@C 2746aac34f13SBarry Smith MatMPIBAIJSetPreallocationCSR - Allocates memory for a sparse parallel matrix in AIJ format 2747aac34f13SBarry Smith (the default parallel PETSc format). 2748aac34f13SBarry Smith 2749aac34f13SBarry Smith Collective on MPI_Comm 2750aac34f13SBarry Smith 2751aac34f13SBarry Smith Input Parameters: 2752aac34f13SBarry Smith + A - the matrix 2753aac34f13SBarry Smith . i - the indices into j for the start of each local row (starts with zero) 2754aac34f13SBarry Smith . j - the column indices for each local row (starts with zero) these must be sorted for each row 2755aac34f13SBarry Smith - v - optional values in the matrix 2756aac34f13SBarry Smith 2757aac34f13SBarry Smith Level: developer 2758aac34f13SBarry Smith 2759aac34f13SBarry Smith .keywords: matrix, aij, compressed row, sparse, parallel 2760aac34f13SBarry Smith 2761aac34f13SBarry Smith .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatMPIBAIJSetPreallocation(), MatCreateMPIAIJ(), MPIAIJ 2762aac34f13SBarry Smith @*/ 2763be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPIBAIJSetPreallocationCSR(Mat B,PetscInt bs,const PetscInt i[],const PetscInt j[], const PetscScalar v[]) 2764aac34f13SBarry Smith { 2765aac34f13SBarry Smith PetscErrorCode ierr,(*f)(Mat,PetscInt,const PetscInt[],const PetscInt[],const PetscScalar[]); 2766aac34f13SBarry Smith 2767aac34f13SBarry Smith PetscFunctionBegin; 2768aac34f13SBarry Smith ierr = PetscObjectQueryFunction((PetscObject)B,"MatMPIBAIJSetPreallocationCSR_C",(void (**)(void))&f);CHKERRQ(ierr); 2769aac34f13SBarry Smith if (f) { 2770aac34f13SBarry Smith ierr = (*f)(B,bs,i,j,v);CHKERRQ(ierr); 2771aac34f13SBarry Smith } 2772aac34f13SBarry Smith PetscFunctionReturn(0); 2773aac34f13SBarry Smith } 2774aac34f13SBarry Smith 2775d94109b8SHong Zhang EXTERN_C_BEGIN 27764a2ae208SSatish Balay #undef __FUNCT__ 2777a23d5eceSKris Buschelman #define __FUNCT__ "MatMPIBAIJSetPreallocation_MPIBAIJ" 2778be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPIBAIJSetPreallocation_MPIBAIJ(Mat B,PetscInt bs,PetscInt d_nz,PetscInt *d_nnz,PetscInt o_nz,PetscInt *o_nnz) 2779a23d5eceSKris Buschelman { 2780a23d5eceSKris Buschelman Mat_MPIBAIJ *b; 2781dfbe8321SBarry Smith PetscErrorCode ierr; 2782db4efbfdSBarry Smith PetscInt i, newbs = PetscAbs(bs); 2783a23d5eceSKris Buschelman 2784a23d5eceSKris Buschelman PetscFunctionBegin; 2785db4efbfdSBarry Smith if (bs < 0) { 27867adad957SLisandro Dalcin ierr = PetscOptionsBegin(((PetscObject)B)->comm,((PetscObject)B)->prefix,"Options for MPIBAIJ matrix","Mat");CHKERRQ(ierr); 2787db4efbfdSBarry Smith ierr = PetscOptionsInt("-mat_block_size","Set the blocksize used to store the matrix","MatMPIBAIJSetPreallocation",newbs,&newbs,PETSC_NULL);CHKERRQ(ierr); 27888c07d4e3SBarry Smith ierr = PetscOptionsEnd();CHKERRQ(ierr); 2789db4efbfdSBarry Smith bs = PetscAbs(bs); 2790db4efbfdSBarry Smith } 2791e7e72b3dSBarry Smith if ((d_nnz || o_nnz) && newbs != bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Cannot change blocksize from command line if setting d_nnz or o_nnz"); 2792db4efbfdSBarry Smith bs = newbs; 2793db4efbfdSBarry Smith 2794a23d5eceSKris Buschelman 2795e7e72b3dSBarry Smith if (bs < 1) SETERRQ(((PetscObject)B)->comm,PETSC_ERR_ARG_OUTOFRANGE,"Invalid block size specified, must be positive"); 2796a23d5eceSKris Buschelman if (d_nz == PETSC_DEFAULT || d_nz == PETSC_DECIDE) d_nz = 5; 2797a23d5eceSKris Buschelman if (o_nz == PETSC_DEFAULT || o_nz == PETSC_DECIDE) o_nz = 2; 2798e32f2f54SBarry Smith if (d_nz < 0) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"d_nz cannot be less than 0: value %D",d_nz); 2799e32f2f54SBarry Smith if (o_nz < 0) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"o_nz cannot be less than 0: value %D",o_nz); 2800899cda47SBarry Smith 280126283091SBarry Smith ierr = PetscLayoutSetBlockSize(B->rmap,bs);CHKERRQ(ierr); 280226283091SBarry Smith ierr = PetscLayoutSetBlockSize(B->cmap,bs);CHKERRQ(ierr); 280326283091SBarry Smith ierr = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr); 280426283091SBarry Smith ierr = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr); 2805899cda47SBarry Smith 2806a23d5eceSKris Buschelman if (d_nnz) { 2807d0f46423SBarry Smith for (i=0; i<B->rmap->n/bs; i++) { 2808e32f2f54SBarry Smith if (d_nnz[i] < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"d_nnz cannot be less than -1: local row %D value %D",i,d_nnz[i]); 2809a23d5eceSKris Buschelman } 2810a23d5eceSKris Buschelman } 2811a23d5eceSKris Buschelman if (o_nnz) { 2812d0f46423SBarry Smith for (i=0; i<B->rmap->n/bs; i++) { 2813e32f2f54SBarry Smith if (o_nnz[i] < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"o_nnz cannot be less than -1: local row %D value %D",i,o_nnz[i]); 2814a23d5eceSKris Buschelman } 2815a23d5eceSKris Buschelman } 2816a23d5eceSKris Buschelman 2817a23d5eceSKris Buschelman b = (Mat_MPIBAIJ*)B->data; 2818a23d5eceSKris Buschelman b->bs2 = bs*bs; 2819d0f46423SBarry Smith b->mbs = B->rmap->n/bs; 2820d0f46423SBarry Smith b->nbs = B->cmap->n/bs; 2821d0f46423SBarry Smith b->Mbs = B->rmap->N/bs; 2822d0f46423SBarry Smith b->Nbs = B->cmap->N/bs; 2823a23d5eceSKris Buschelman 2824a23d5eceSKris Buschelman for (i=0; i<=b->size; i++) { 2825d0f46423SBarry Smith b->rangebs[i] = B->rmap->range[i]/bs; 2826a23d5eceSKris Buschelman } 2827d0f46423SBarry Smith b->rstartbs = B->rmap->rstart/bs; 2828d0f46423SBarry Smith b->rendbs = B->rmap->rend/bs; 2829d0f46423SBarry Smith b->cstartbs = B->cmap->rstart/bs; 2830d0f46423SBarry Smith b->cendbs = B->cmap->rend/bs; 2831a23d5eceSKris Buschelman 2832526dfc15SBarry Smith if (!B->preallocated) { 2833f69a0ea3SMatthew Knepley ierr = MatCreate(PETSC_COMM_SELF,&b->A);CHKERRQ(ierr); 2834d0f46423SBarry Smith ierr = MatSetSizes(b->A,B->rmap->n,B->cmap->n,B->rmap->n,B->cmap->n);CHKERRQ(ierr); 28359c097c71SKris Buschelman ierr = MatSetType(b->A,MATSEQBAIJ);CHKERRQ(ierr); 283652e6d16bSBarry Smith ierr = PetscLogObjectParent(B,b->A);CHKERRQ(ierr); 2837f69a0ea3SMatthew Knepley ierr = MatCreate(PETSC_COMM_SELF,&b->B);CHKERRQ(ierr); 2838d0f46423SBarry Smith ierr = MatSetSizes(b->B,B->rmap->n,B->cmap->N,B->rmap->n,B->cmap->N);CHKERRQ(ierr); 28399c097c71SKris Buschelman ierr = MatSetType(b->B,MATSEQBAIJ);CHKERRQ(ierr); 284052e6d16bSBarry Smith ierr = PetscLogObjectParent(B,b->B);CHKERRQ(ierr); 28417adad957SLisandro Dalcin ierr = MatStashCreate_Private(((PetscObject)B)->comm,bs,&B->bstash);CHKERRQ(ierr); 2842526dfc15SBarry Smith } 2843a23d5eceSKris Buschelman 2844526dfc15SBarry Smith ierr = MatSeqBAIJSetPreallocation(b->A,bs,d_nz,d_nnz);CHKERRQ(ierr); 2845526dfc15SBarry Smith ierr = MatSeqBAIJSetPreallocation(b->B,bs,o_nz,o_nnz);CHKERRQ(ierr); 2846526dfc15SBarry Smith B->preallocated = PETSC_TRUE; 2847a23d5eceSKris Buschelman PetscFunctionReturn(0); 2848a23d5eceSKris Buschelman } 2849a23d5eceSKris Buschelman EXTERN_C_END 2850a23d5eceSKris Buschelman 2851a23d5eceSKris Buschelman EXTERN_C_BEGIN 2852be1d678aSKris Buschelman EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatDiagonalScaleLocal_MPIBAIJ(Mat,Vec); 2853be1d678aSKris Buschelman EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatSetHashTableFactor_MPIBAIJ(Mat,PetscReal); 285492b32695SKris Buschelman EXTERN_C_END 28555bf65638SKris Buschelman 285682094794SBarry Smith 285782094794SBarry Smith EXTERN_C_BEGIN 285882094794SBarry Smith #undef __FUNCT__ 285982094794SBarry Smith #define __FUNCT__ "MatConvert_MPIBAIJ_MPIAdj" 286082094794SBarry Smith PetscErrorCode PETSCMAT_DLLEXPORT MatConvert_MPIBAIJ_MPIAdj(Mat B, const MatType newtype,MatReuse reuse,Mat *adj) 286182094794SBarry Smith { 286282094794SBarry Smith Mat_MPIBAIJ *b = (Mat_MPIBAIJ*)B->data; 286382094794SBarry Smith PetscErrorCode ierr; 286482094794SBarry Smith Mat_SeqBAIJ *d = (Mat_SeqBAIJ*) b->A->data,*o = (Mat_SeqBAIJ*) b->B->data; 286582094794SBarry Smith PetscInt M = B->rmap->n/B->rmap->bs,i,*ii,*jj,cnt,j,k,rstart = B->rmap->rstart/B->rmap->bs; 286682094794SBarry Smith const PetscInt *id = d->i, *jd = d->j, *io = o->i, *jo = o->j, *garray = b->garray; 286782094794SBarry Smith 286882094794SBarry Smith PetscFunctionBegin; 286982094794SBarry Smith ierr = PetscMalloc((M+1)*sizeof(PetscInt),&ii);CHKERRQ(ierr); 287082094794SBarry Smith ii[0] = 0; 287182094794SBarry Smith CHKMEMQ; 287282094794SBarry Smith for (i=0; i<M; i++) { 2873e32f2f54SBarry Smith if ((id[i+1] - id[i]) < 0) SETERRQ3(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Indices wrong %D %D %D",i,id[i],id[i+1]); 2874e32f2f54SBarry Smith if ((io[i+1] - io[i]) < 0) SETERRQ3(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Indices wrong %D %D %D",i,io[i],io[i+1]); 287582094794SBarry Smith ii[i+1] = ii[i] + id[i+1] - id[i] + io[i+1] - io[i]; 287682094794SBarry Smith /* remove one from count of matrix has diagonal */ 287782094794SBarry Smith for (j=id[i]; j<id[i+1]; j++) { 287882094794SBarry Smith if (jd[j] == i) {ii[i+1]--;break;} 287982094794SBarry Smith } 288082094794SBarry Smith CHKMEMQ; 288182094794SBarry Smith } 288282094794SBarry Smith ierr = PetscMalloc(ii[M]*sizeof(PetscInt),&jj);CHKERRQ(ierr); 288382094794SBarry Smith cnt = 0; 288482094794SBarry Smith for (i=0; i<M; i++) { 288582094794SBarry Smith for (j=io[i]; j<io[i+1]; j++) { 288682094794SBarry Smith if (garray[jo[j]] > rstart) break; 288782094794SBarry Smith jj[cnt++] = garray[jo[j]]; 288882094794SBarry Smith CHKMEMQ; 288982094794SBarry Smith } 289082094794SBarry Smith for (k=id[i]; k<id[i+1]; k++) { 289182094794SBarry Smith if (jd[k] != i) { 289282094794SBarry Smith jj[cnt++] = rstart + jd[k]; 289382094794SBarry Smith CHKMEMQ; 289482094794SBarry Smith } 289582094794SBarry Smith } 289682094794SBarry Smith for (;j<io[i+1]; j++) { 289782094794SBarry Smith jj[cnt++] = garray[jo[j]]; 289882094794SBarry Smith CHKMEMQ; 289982094794SBarry Smith } 290082094794SBarry Smith } 290182094794SBarry Smith ierr = MatCreateMPIAdj(((PetscObject)B)->comm,M,B->cmap->N/B->rmap->bs,ii,jj,PETSC_NULL,adj);CHKERRQ(ierr); 290282094794SBarry Smith PetscFunctionReturn(0); 290382094794SBarry Smith } 2904dbf0e21dSBarry Smith EXTERN_C_END 290582094794SBarry Smith 2906450b117fSShri Abhyankar EXTERN_C_BEGIN 2907450b117fSShri Abhyankar #if defined(PETSC_HAVE_MUMPS) 2908*bccb9932SShri Abhyankar extern PetscErrorCode MatGetFactor_baij_mumps(Mat,MatFactorType,Mat*); 2909450b117fSShri Abhyankar #endif 2910450b117fSShri Abhyankar EXTERN_C_END 2911450b117fSShri Abhyankar 29120bad9183SKris Buschelman /*MC 2913fafad747SKris Buschelman MATMPIBAIJ - MATMPIBAIJ = "mpibaij" - A matrix type to be used for distributed block sparse matrices. 29140bad9183SKris Buschelman 29150bad9183SKris Buschelman Options Database Keys: 29168c07d4e3SBarry Smith + -mat_type mpibaij - sets the matrix type to "mpibaij" during a call to MatSetFromOptions() 29178c07d4e3SBarry Smith . -mat_block_size <bs> - set the blocksize used to store the matrix 29188c07d4e3SBarry Smith - -mat_use_hash_table <fact> 29190bad9183SKris Buschelman 29200bad9183SKris Buschelman Level: beginner 29210bad9183SKris Buschelman 29220bad9183SKris Buschelman .seealso: MatCreateMPIBAIJ 29230bad9183SKris Buschelman M*/ 29240bad9183SKris Buschelman 292592b32695SKris Buschelman EXTERN_C_BEGIN 2926a23d5eceSKris Buschelman #undef __FUNCT__ 29274a2ae208SSatish Balay #define __FUNCT__ "MatCreate_MPIBAIJ" 2928be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreate_MPIBAIJ(Mat B) 2929273d9f13SBarry Smith { 2930273d9f13SBarry Smith Mat_MPIBAIJ *b; 2931dfbe8321SBarry Smith PetscErrorCode ierr; 2932273d9f13SBarry Smith PetscTruth flg; 2933273d9f13SBarry Smith 2934273d9f13SBarry Smith PetscFunctionBegin; 293538f2d2fdSLisandro Dalcin ierr = PetscNewLog(B,Mat_MPIBAIJ,&b);CHKERRQ(ierr); 293682502324SSatish Balay B->data = (void*)b; 293782502324SSatish Balay 2938085a36d4SBarry Smith 2939273d9f13SBarry Smith ierr = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr); 2940273d9f13SBarry Smith B->mapping = 0; 2941273d9f13SBarry Smith B->assembled = PETSC_FALSE; 2942273d9f13SBarry Smith 2943273d9f13SBarry Smith B->insertmode = NOT_SET_VALUES; 29447adad957SLisandro Dalcin ierr = MPI_Comm_rank(((PetscObject)B)->comm,&b->rank);CHKERRQ(ierr); 29457adad957SLisandro Dalcin ierr = MPI_Comm_size(((PetscObject)B)->comm,&b->size);CHKERRQ(ierr); 2946273d9f13SBarry Smith 2947273d9f13SBarry Smith /* build local table of row and column ownerships */ 2948899cda47SBarry Smith ierr = PetscMalloc((b->size+1)*sizeof(PetscInt),&b->rangebs);CHKERRQ(ierr); 2949273d9f13SBarry Smith 2950273d9f13SBarry Smith /* build cache for off array entries formed */ 29517adad957SLisandro Dalcin ierr = MatStashCreate_Private(((PetscObject)B)->comm,1,&B->stash);CHKERRQ(ierr); 2952273d9f13SBarry Smith b->donotstash = PETSC_FALSE; 2953273d9f13SBarry Smith b->colmap = PETSC_NULL; 2954273d9f13SBarry Smith b->garray = PETSC_NULL; 2955273d9f13SBarry Smith b->roworiented = PETSC_TRUE; 2956273d9f13SBarry Smith 2957273d9f13SBarry Smith /* stuff used in block assembly */ 2958273d9f13SBarry Smith b->barray = 0; 2959273d9f13SBarry Smith 2960273d9f13SBarry Smith /* stuff used for matrix vector multiply */ 2961273d9f13SBarry Smith b->lvec = 0; 2962273d9f13SBarry Smith b->Mvctx = 0; 2963273d9f13SBarry Smith 2964273d9f13SBarry Smith /* stuff for MatGetRow() */ 2965273d9f13SBarry Smith b->rowindices = 0; 2966273d9f13SBarry Smith b->rowvalues = 0; 2967273d9f13SBarry Smith b->getrowactive = PETSC_FALSE; 2968273d9f13SBarry Smith 2969273d9f13SBarry Smith /* hash table stuff */ 2970273d9f13SBarry Smith b->ht = 0; 2971273d9f13SBarry Smith b->hd = 0; 2972273d9f13SBarry Smith b->ht_size = 0; 2973273d9f13SBarry Smith b->ht_flag = PETSC_FALSE; 2974273d9f13SBarry Smith b->ht_fact = 0; 2975273d9f13SBarry Smith b->ht_total_ct = 0; 2976273d9f13SBarry Smith b->ht_insert_ct = 0; 2977273d9f13SBarry Smith 29787adad957SLisandro Dalcin ierr = PetscOptionsBegin(((PetscObject)B)->comm,PETSC_NULL,"Options for loading MPIBAIJ matrix 1","Mat");CHKERRQ(ierr); 29798c07d4e3SBarry Smith ierr = PetscOptionsTruth("-mat_use_hash_table","Use hash table to save memory in constructing matrix","MatSetOption",PETSC_FALSE,&flg,PETSC_NULL);CHKERRQ(ierr); 2980273d9f13SBarry Smith if (flg) { 2981f6275e2eSBarry Smith PetscReal fact = 1.39; 29824e0d8c25SBarry Smith ierr = MatSetOption(B,MAT_USE_HASH_TABLE,PETSC_TRUE);CHKERRQ(ierr); 29838c07d4e3SBarry Smith ierr = PetscOptionsReal("-mat_use_hash_table","Use hash table factor","MatMPIBAIJSetHashTableFactor",fact,&fact,PETSC_NULL);CHKERRQ(ierr); 2984273d9f13SBarry Smith if (fact <= 1.0) fact = 1.39; 2985273d9f13SBarry Smith ierr = MatMPIBAIJSetHashTableFactor(B,fact);CHKERRQ(ierr); 29861e2582c4SBarry Smith ierr = PetscInfo1(B,"Hash table Factor used %5.2f\n",fact);CHKERRQ(ierr); 2987273d9f13SBarry Smith } 29888c07d4e3SBarry Smith ierr = PetscOptionsEnd();CHKERRQ(ierr); 29898c07d4e3SBarry Smith 2990450b117fSShri Abhyankar #if defined(PETSC_HAVE_MUMPS) 2991*bccb9932SShri Abhyankar ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetFactor_mumps_C", "MatGetFactor_baij_mumps",MatGetFactor_baij_mumps);CHKERRQ(ierr); 2992450b117fSShri Abhyankar #endif 299382094794SBarry Smith ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatConvert_mpibaij_mpiadj_C", 299482094794SBarry Smith "MatConvert_MPIBAIJ_MPIAdj", 299582094794SBarry Smith MatConvert_MPIBAIJ_MPIAdj);CHKERRQ(ierr); 2996273d9f13SBarry Smith ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatStoreValues_C", 2997273d9f13SBarry Smith "MatStoreValues_MPIBAIJ", 2998273d9f13SBarry Smith MatStoreValues_MPIBAIJ);CHKERRQ(ierr); 2999273d9f13SBarry Smith ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatRetrieveValues_C", 3000273d9f13SBarry Smith "MatRetrieveValues_MPIBAIJ", 3001273d9f13SBarry Smith MatRetrieveValues_MPIBAIJ);CHKERRQ(ierr); 3002273d9f13SBarry Smith ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetDiagonalBlock_C", 3003273d9f13SBarry Smith "MatGetDiagonalBlock_MPIBAIJ", 3004273d9f13SBarry Smith MatGetDiagonalBlock_MPIBAIJ);CHKERRQ(ierr); 3005a23d5eceSKris Buschelman ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatMPIBAIJSetPreallocation_C", 3006a23d5eceSKris Buschelman "MatMPIBAIJSetPreallocation_MPIBAIJ", 3007a23d5eceSKris Buschelman MatMPIBAIJSetPreallocation_MPIBAIJ);CHKERRQ(ierr); 3008aac34f13SBarry Smith ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatMPIBAIJSetPreallocationCSR_C", 300944ec7894SLisandro Dalcin "MatMPIBAIJSetPreallocationCSR_MPIBAIJ", 3010aac34f13SBarry Smith MatMPIBAIJSetPreallocationCSR_MPIBAIJ);CHKERRQ(ierr); 301192b32695SKris Buschelman ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatDiagonalScaleLocal_C", 301292b32695SKris Buschelman "MatDiagonalScaleLocal_MPIBAIJ", 301392b32695SKris Buschelman MatDiagonalScaleLocal_MPIBAIJ);CHKERRQ(ierr); 30145bf65638SKris Buschelman ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatSetHashTableFactor_C", 30155bf65638SKris Buschelman "MatSetHashTableFactor_MPIBAIJ", 30165bf65638SKris Buschelman MatSetHashTableFactor_MPIBAIJ);CHKERRQ(ierr); 301717667f90SBarry Smith ierr = PetscObjectChangeTypeName((PetscObject)B,MATMPIBAIJ);CHKERRQ(ierr); 3018273d9f13SBarry Smith PetscFunctionReturn(0); 3019273d9f13SBarry Smith } 3020273d9f13SBarry Smith EXTERN_C_END 3021273d9f13SBarry Smith 3022209238afSKris Buschelman /*MC 3023002d173eSKris Buschelman MATBAIJ - MATBAIJ = "baij" - A matrix type to be used for block sparse matrices. 3024209238afSKris Buschelman 3025209238afSKris Buschelman This matrix type is identical to MATSEQBAIJ when constructed with a single process communicator, 3026209238afSKris Buschelman and MATMPIBAIJ otherwise. 3027209238afSKris Buschelman 3028209238afSKris Buschelman Options Database Keys: 3029209238afSKris Buschelman . -mat_type baij - sets the matrix type to "baij" during a call to MatSetFromOptions() 3030209238afSKris Buschelman 3031209238afSKris Buschelman Level: beginner 3032209238afSKris Buschelman 3033aac34f13SBarry Smith .seealso: MatCreateMPIBAIJ(),MATSEQBAIJ,MATMPIBAIJ, MatMPIBAIJSetPreallocation(), MatMPIBAIJSetPreallocationCSR() 3034209238afSKris Buschelman M*/ 3035209238afSKris Buschelman 3036209238afSKris Buschelman EXTERN_C_BEGIN 3037209238afSKris Buschelman #undef __FUNCT__ 3038209238afSKris Buschelman #define __FUNCT__ "MatCreate_BAIJ" 3039be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreate_BAIJ(Mat A) 3040dfbe8321SBarry Smith { 30416849ba73SBarry Smith PetscErrorCode ierr; 3042b24ad042SBarry Smith PetscMPIInt size; 3043209238afSKris Buschelman 3044209238afSKris Buschelman PetscFunctionBegin; 30457adad957SLisandro Dalcin ierr = MPI_Comm_size(((PetscObject)A)->comm,&size);CHKERRQ(ierr); 3046209238afSKris Buschelman if (size == 1) { 3047209238afSKris Buschelman ierr = MatSetType(A,MATSEQBAIJ);CHKERRQ(ierr); 3048209238afSKris Buschelman } else { 3049209238afSKris Buschelman ierr = MatSetType(A,MATMPIBAIJ);CHKERRQ(ierr); 3050209238afSKris Buschelman } 3051209238afSKris Buschelman PetscFunctionReturn(0); 3052209238afSKris Buschelman } 3053209238afSKris Buschelman EXTERN_C_END 3054209238afSKris Buschelman 30554a2ae208SSatish Balay #undef __FUNCT__ 30564a2ae208SSatish Balay #define __FUNCT__ "MatMPIBAIJSetPreallocation" 3057273d9f13SBarry Smith /*@C 3058aac34f13SBarry Smith MatMPIBAIJSetPreallocation - Allocates memory for a sparse parallel matrix in block AIJ format 3059273d9f13SBarry Smith (block compressed row). For good matrix assembly performance 3060273d9f13SBarry Smith the user should preallocate the matrix storage by setting the parameters 3061273d9f13SBarry Smith d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 3062273d9f13SBarry Smith performance can be increased by more than a factor of 50. 3063273d9f13SBarry Smith 3064273d9f13SBarry Smith Collective on Mat 3065273d9f13SBarry Smith 3066273d9f13SBarry Smith Input Parameters: 3067273d9f13SBarry Smith + A - the matrix 3068273d9f13SBarry Smith . bs - size of blockk 3069273d9f13SBarry Smith . d_nz - number of block nonzeros per block row in diagonal portion of local 3070273d9f13SBarry Smith submatrix (same for all local rows) 3071273d9f13SBarry Smith . d_nnz - array containing the number of block nonzeros in the various block rows 3072273d9f13SBarry Smith of the in diagonal portion of the local (possibly different for each block 3073273d9f13SBarry Smith row) or PETSC_NULL. You must leave room for the diagonal entry even if it is zero. 3074273d9f13SBarry Smith . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 3075273d9f13SBarry Smith submatrix (same for all local rows). 3076273d9f13SBarry Smith - o_nnz - array containing the number of nonzeros in the various block rows of the 3077273d9f13SBarry Smith off-diagonal portion of the local submatrix (possibly different for 3078273d9f13SBarry Smith each block row) or PETSC_NULL. 3079273d9f13SBarry Smith 308049a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 3081273d9f13SBarry Smith 3082273d9f13SBarry Smith Options Database Keys: 30838c07d4e3SBarry Smith + -mat_block_size - size of the blocks to use 30848c07d4e3SBarry Smith - -mat_use_hash_table <fact> 3085273d9f13SBarry Smith 3086273d9f13SBarry Smith Notes: 3087273d9f13SBarry Smith If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one processor 3088273d9f13SBarry Smith than it must be used on all processors that share the object for that argument. 3089273d9f13SBarry Smith 3090273d9f13SBarry Smith Storage Information: 3091273d9f13SBarry Smith For a square global matrix we define each processor's diagonal portion 3092273d9f13SBarry Smith to be its local rows and the corresponding columns (a square submatrix); 3093273d9f13SBarry Smith each processor's off-diagonal portion encompasses the remainder of the 3094273d9f13SBarry Smith local matrix (a rectangular submatrix). 3095273d9f13SBarry Smith 3096273d9f13SBarry Smith The user can specify preallocated storage for the diagonal part of 3097273d9f13SBarry Smith the local submatrix with either d_nz or d_nnz (not both). Set 3098273d9f13SBarry Smith d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic 3099273d9f13SBarry Smith memory allocation. Likewise, specify preallocated storage for the 3100273d9f13SBarry Smith off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 3101273d9f13SBarry Smith 3102273d9f13SBarry Smith Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 3103273d9f13SBarry Smith the figure below we depict these three local rows and all columns (0-11). 3104273d9f13SBarry Smith 3105273d9f13SBarry Smith .vb 3106273d9f13SBarry Smith 0 1 2 3 4 5 6 7 8 9 10 11 3107273d9f13SBarry Smith ------------------- 3108273d9f13SBarry Smith row 3 | o o o d d d o o o o o o 3109273d9f13SBarry Smith row 4 | o o o d d d o o o o o o 3110273d9f13SBarry Smith row 5 | o o o d d d o o o o o o 3111273d9f13SBarry Smith ------------------- 3112273d9f13SBarry Smith .ve 3113273d9f13SBarry Smith 3114273d9f13SBarry Smith Thus, any entries in the d locations are stored in the d (diagonal) 3115273d9f13SBarry Smith submatrix, and any entries in the o locations are stored in the 3116273d9f13SBarry Smith o (off-diagonal) submatrix. Note that the d and the o submatrices are 3117273d9f13SBarry Smith stored simply in the MATSEQBAIJ format for compressed row storage. 3118273d9f13SBarry Smith 3119273d9f13SBarry Smith Now d_nz should indicate the number of block nonzeros per row in the d matrix, 3120273d9f13SBarry Smith and o_nz should indicate the number of block nonzeros per row in the o matrix. 3121273d9f13SBarry Smith In general, for PDE problems in which most nonzeros are near the diagonal, 3122273d9f13SBarry Smith one expects d_nz >> o_nz. For large problems you MUST preallocate memory 3123273d9f13SBarry Smith or you will get TERRIBLE performance; see the users' manual chapter on 3124273d9f13SBarry Smith matrices. 3125273d9f13SBarry Smith 3126aa95bbe8SBarry Smith You can call MatGetInfo() to get information on how effective the preallocation was; 3127aa95bbe8SBarry Smith for example the fields mallocs,nz_allocated,nz_used,nz_unneeded; 3128aa95bbe8SBarry Smith You can also run with the option -info and look for messages with the string 3129aa95bbe8SBarry Smith malloc in them to see if additional memory allocation was needed. 3130aa95bbe8SBarry Smith 3131273d9f13SBarry Smith Level: intermediate 3132273d9f13SBarry Smith 3133273d9f13SBarry Smith .keywords: matrix, block, aij, compressed row, sparse, parallel 3134273d9f13SBarry Smith 3135aac34f13SBarry Smith .seealso: MatCreate(), MatCreateSeqBAIJ(), MatSetValues(), MatCreateMPIBAIJ(), MatMPIBAIJSetPreallocationCSR() 3136273d9f13SBarry Smith @*/ 3137be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPIBAIJSetPreallocation(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[]) 3138273d9f13SBarry Smith { 3139b24ad042SBarry Smith PetscErrorCode ierr,(*f)(Mat,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[]); 3140273d9f13SBarry Smith 3141273d9f13SBarry Smith PetscFunctionBegin; 3142a23d5eceSKris Buschelman ierr = PetscObjectQueryFunction((PetscObject)B,"MatMPIBAIJSetPreallocation_C",(void (**)(void))&f);CHKERRQ(ierr); 3143a23d5eceSKris Buschelman if (f) { 3144a23d5eceSKris Buschelman ierr = (*f)(B,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr); 3145273d9f13SBarry Smith } 3146273d9f13SBarry Smith PetscFunctionReturn(0); 3147273d9f13SBarry Smith } 3148273d9f13SBarry Smith 31494a2ae208SSatish Balay #undef __FUNCT__ 31504a2ae208SSatish Balay #define __FUNCT__ "MatCreateMPIBAIJ" 315179bdfe76SSatish Balay /*@C 315279bdfe76SSatish Balay MatCreateMPIBAIJ - Creates a sparse parallel matrix in block AIJ format 315379bdfe76SSatish Balay (block compressed row). For good matrix assembly performance 315479bdfe76SSatish Balay the user should preallocate the matrix storage by setting the parameters 315579bdfe76SSatish Balay d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 315679bdfe76SSatish Balay performance can be increased by more than a factor of 50. 315779bdfe76SSatish Balay 3158db81eaa0SLois Curfman McInnes Collective on MPI_Comm 3159db81eaa0SLois Curfman McInnes 316079bdfe76SSatish Balay Input Parameters: 3161db81eaa0SLois Curfman McInnes + comm - MPI communicator 316279bdfe76SSatish Balay . bs - size of blockk 316379bdfe76SSatish Balay . m - number of local rows (or PETSC_DECIDE to have calculated if M is given) 316492e8d321SLois Curfman McInnes This value should be the same as the local size used in creating the 316592e8d321SLois Curfman McInnes y vector for the matrix-vector product y = Ax. 316692e8d321SLois Curfman McInnes . n - number of local columns (or PETSC_DECIDE to have calculated if N is given) 316792e8d321SLois Curfman McInnes This value should be the same as the local size used in creating the 316892e8d321SLois Curfman McInnes x vector for the matrix-vector product y = Ax. 3169be79a94dSBarry Smith . M - number of global rows (or PETSC_DETERMINE to have calculated if m is given) 3170be79a94dSBarry Smith . N - number of global columns (or PETSC_DETERMINE to have calculated if n is given) 317147a75d0bSBarry Smith . d_nz - number of nonzero blocks per block row in diagonal portion of local 317279bdfe76SSatish Balay submatrix (same for all local rows) 317347a75d0bSBarry Smith . d_nnz - array containing the number of nonzero blocks in the various block rows 317492e8d321SLois Curfman McInnes of the in diagonal portion of the local (possibly different for each block 3175db81eaa0SLois Curfman McInnes row) or PETSC_NULL. You must leave room for the diagonal entry even if it is zero. 317647a75d0bSBarry Smith . o_nz - number of nonzero blocks per block row in the off-diagonal portion of local 317779bdfe76SSatish Balay submatrix (same for all local rows). 317847a75d0bSBarry Smith - o_nnz - array containing the number of nonzero blocks in the various block rows of the 317992e8d321SLois Curfman McInnes off-diagonal portion of the local submatrix (possibly different for 318092e8d321SLois Curfman McInnes each block row) or PETSC_NULL. 318179bdfe76SSatish Balay 318279bdfe76SSatish Balay Output Parameter: 318379bdfe76SSatish Balay . A - the matrix 318479bdfe76SSatish Balay 3185db81eaa0SLois Curfman McInnes Options Database Keys: 31868c07d4e3SBarry Smith + -mat_block_size - size of the blocks to use 31878c07d4e3SBarry Smith - -mat_use_hash_table <fact> 31883ffaccefSLois Curfman McInnes 3189175b88e8SBarry Smith It is recommended that one use the MatCreate(), MatSetType() and/or MatSetFromOptions(), 3190ae1d86c5SBarry Smith MatXXXXSetPreallocation() paradgm instead of this routine directly. 3191175b88e8SBarry Smith [MatXXXXSetPreallocation() is, for example, MatSeqAIJSetPreallocation] 3192175b88e8SBarry Smith 3193b259b22eSLois Curfman McInnes Notes: 319449a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 319549a6f317SBarry Smith 319647a75d0bSBarry Smith A nonzero block is any block that as 1 or more nonzeros in it 319747a75d0bSBarry Smith 319879bdfe76SSatish Balay The user MUST specify either the local or global matrix dimensions 319979bdfe76SSatish Balay (possibly both). 320079bdfe76SSatish Balay 3201be79a94dSBarry Smith If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one processor 3202be79a94dSBarry Smith than it must be used on all processors that share the object for that argument. 3203be79a94dSBarry Smith 320479bdfe76SSatish Balay Storage Information: 320579bdfe76SSatish Balay For a square global matrix we define each processor's diagonal portion 320679bdfe76SSatish Balay to be its local rows and the corresponding columns (a square submatrix); 320779bdfe76SSatish Balay each processor's off-diagonal portion encompasses the remainder of the 320879bdfe76SSatish Balay local matrix (a rectangular submatrix). 320979bdfe76SSatish Balay 321079bdfe76SSatish Balay The user can specify preallocated storage for the diagonal part of 321179bdfe76SSatish Balay the local submatrix with either d_nz or d_nnz (not both). Set 321279bdfe76SSatish Balay d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic 321379bdfe76SSatish Balay memory allocation. Likewise, specify preallocated storage for the 321479bdfe76SSatish Balay off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 321579bdfe76SSatish Balay 321679bdfe76SSatish Balay Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 321779bdfe76SSatish Balay the figure below we depict these three local rows and all columns (0-11). 321879bdfe76SSatish Balay 3219db81eaa0SLois Curfman McInnes .vb 3220db81eaa0SLois Curfman McInnes 0 1 2 3 4 5 6 7 8 9 10 11 3221db81eaa0SLois Curfman McInnes ------------------- 3222db81eaa0SLois Curfman McInnes row 3 | o o o d d d o o o o o o 3223db81eaa0SLois Curfman McInnes row 4 | o o o d d d o o o o o o 3224db81eaa0SLois Curfman McInnes row 5 | o o o d d d o o o o o o 3225db81eaa0SLois Curfman McInnes ------------------- 3226db81eaa0SLois Curfman McInnes .ve 322779bdfe76SSatish Balay 322879bdfe76SSatish Balay Thus, any entries in the d locations are stored in the d (diagonal) 322979bdfe76SSatish Balay submatrix, and any entries in the o locations are stored in the 323079bdfe76SSatish Balay o (off-diagonal) submatrix. Note that the d and the o submatrices are 323157b952d6SSatish Balay stored simply in the MATSEQBAIJ format for compressed row storage. 323279bdfe76SSatish Balay 3233d64ed03dSBarry Smith Now d_nz should indicate the number of block nonzeros per row in the d matrix, 3234d64ed03dSBarry Smith and o_nz should indicate the number of block nonzeros per row in the o matrix. 323579bdfe76SSatish Balay In general, for PDE problems in which most nonzeros are near the diagonal, 323692e8d321SLois Curfman McInnes one expects d_nz >> o_nz. For large problems you MUST preallocate memory 323792e8d321SLois Curfman McInnes or you will get TERRIBLE performance; see the users' manual chapter on 32386da5968aSLois Curfman McInnes matrices. 323979bdfe76SSatish Balay 3240027ccd11SLois Curfman McInnes Level: intermediate 3241027ccd11SLois Curfman McInnes 324292e8d321SLois Curfman McInnes .keywords: matrix, block, aij, compressed row, sparse, parallel 324379bdfe76SSatish Balay 3244aac34f13SBarry Smith .seealso: MatCreate(), MatCreateSeqBAIJ(), MatSetValues(), MatCreateMPIBAIJ(), MatMPIBAIJSetPreallocation(), MatMPIBAIJSetPreallocationCSR() 324579bdfe76SSatish Balay @*/ 3246be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreateMPIBAIJ(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[],Mat *A) 324779bdfe76SSatish Balay { 32486849ba73SBarry Smith PetscErrorCode ierr; 3249b24ad042SBarry Smith PetscMPIInt size; 325079bdfe76SSatish Balay 3251d64ed03dSBarry Smith PetscFunctionBegin; 3252f69a0ea3SMatthew Knepley ierr = MatCreate(comm,A);CHKERRQ(ierr); 3253f69a0ea3SMatthew Knepley ierr = MatSetSizes(*A,m,n,M,N);CHKERRQ(ierr); 3254d132466eSBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 3255273d9f13SBarry Smith if (size > 1) { 3256273d9f13SBarry Smith ierr = MatSetType(*A,MATMPIBAIJ);CHKERRQ(ierr); 3257273d9f13SBarry Smith ierr = MatMPIBAIJSetPreallocation(*A,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr); 3258273d9f13SBarry Smith } else { 3259273d9f13SBarry Smith ierr = MatSetType(*A,MATSEQBAIJ);CHKERRQ(ierr); 3260273d9f13SBarry Smith ierr = MatSeqBAIJSetPreallocation(*A,bs,d_nz,d_nnz);CHKERRQ(ierr); 32613914022bSBarry Smith } 32623a40ed3dSBarry Smith PetscFunctionReturn(0); 326379bdfe76SSatish Balay } 3264026e39d0SSatish Balay 32654a2ae208SSatish Balay #undef __FUNCT__ 32664a2ae208SSatish Balay #define __FUNCT__ "MatDuplicate_MPIBAIJ" 32676849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIBAIJ(Mat matin,MatDuplicateOption cpvalues,Mat *newmat) 32680ac07820SSatish Balay { 32690ac07820SSatish Balay Mat mat; 32700ac07820SSatish Balay Mat_MPIBAIJ *a,*oldmat = (Mat_MPIBAIJ*)matin->data; 3271dfbe8321SBarry Smith PetscErrorCode ierr; 3272b24ad042SBarry Smith PetscInt len=0; 32730ac07820SSatish Balay 3274d64ed03dSBarry Smith PetscFunctionBegin; 32750ac07820SSatish Balay *newmat = 0; 32767adad957SLisandro Dalcin ierr = MatCreate(((PetscObject)matin)->comm,&mat);CHKERRQ(ierr); 3277d0f46423SBarry Smith ierr = MatSetSizes(mat,matin->rmap->n,matin->cmap->n,matin->rmap->N,matin->cmap->N);CHKERRQ(ierr); 32787adad957SLisandro Dalcin ierr = MatSetType(mat,((PetscObject)matin)->type_name);CHKERRQ(ierr); 32791d5dac46SHong Zhang ierr = PetscMemcpy(mat->ops,matin->ops,sizeof(struct _MatOps));CHKERRQ(ierr); 32807fff6886SHong Zhang 3281d5f3da31SBarry Smith mat->factortype = matin->factortype; 3282273d9f13SBarry Smith mat->preallocated = PETSC_TRUE; 32830ac07820SSatish Balay mat->assembled = PETSC_TRUE; 32847fff6886SHong Zhang mat->insertmode = NOT_SET_VALUES; 32857fff6886SHong Zhang 3286273d9f13SBarry Smith a = (Mat_MPIBAIJ*)mat->data; 3287d0f46423SBarry Smith mat->rmap->bs = matin->rmap->bs; 32880ac07820SSatish Balay a->bs2 = oldmat->bs2; 32890ac07820SSatish Balay a->mbs = oldmat->mbs; 32900ac07820SSatish Balay a->nbs = oldmat->nbs; 32910ac07820SSatish Balay a->Mbs = oldmat->Mbs; 32920ac07820SSatish Balay a->Nbs = oldmat->Nbs; 32930ac07820SSatish Balay 329426283091SBarry Smith ierr = PetscLayoutCopy(matin->rmap,&mat->rmap);CHKERRQ(ierr); 329526283091SBarry Smith ierr = PetscLayoutCopy(matin->cmap,&mat->cmap);CHKERRQ(ierr); 3296899cda47SBarry Smith 32970ac07820SSatish Balay a->size = oldmat->size; 32980ac07820SSatish Balay a->rank = oldmat->rank; 3299aef5e8e0SSatish Balay a->donotstash = oldmat->donotstash; 3300aef5e8e0SSatish Balay a->roworiented = oldmat->roworiented; 3301aef5e8e0SSatish Balay a->rowindices = 0; 33020ac07820SSatish Balay a->rowvalues = 0; 33030ac07820SSatish Balay a->getrowactive = PETSC_FALSE; 330430793edcSSatish Balay a->barray = 0; 3305899cda47SBarry Smith a->rstartbs = oldmat->rstartbs; 3306899cda47SBarry Smith a->rendbs = oldmat->rendbs; 3307899cda47SBarry Smith a->cstartbs = oldmat->cstartbs; 3308899cda47SBarry Smith a->cendbs = oldmat->cendbs; 33090ac07820SSatish Balay 3310133cdb44SSatish Balay /* hash table stuff */ 3311133cdb44SSatish Balay a->ht = 0; 3312133cdb44SSatish Balay a->hd = 0; 3313133cdb44SSatish Balay a->ht_size = 0; 3314133cdb44SSatish Balay a->ht_flag = oldmat->ht_flag; 331525fdafccSSatish Balay a->ht_fact = oldmat->ht_fact; 3316133cdb44SSatish Balay a->ht_total_ct = 0; 3317133cdb44SSatish Balay a->ht_insert_ct = 0; 3318133cdb44SSatish Balay 3319899cda47SBarry Smith ierr = PetscMemcpy(a->rangebs,oldmat->rangebs,(a->size+1)*sizeof(PetscInt));CHKERRQ(ierr); 33200ac07820SSatish Balay if (oldmat->colmap) { 3321aa482453SBarry Smith #if defined (PETSC_USE_CTABLE) 33220f5bd95cSBarry Smith ierr = PetscTableCreateCopy(oldmat->colmap,&a->colmap);CHKERRQ(ierr); 332348e59246SSatish Balay #else 3324b24ad042SBarry Smith ierr = PetscMalloc((a->Nbs)*sizeof(PetscInt),&a->colmap);CHKERRQ(ierr); 332552e6d16bSBarry Smith ierr = PetscLogObjectMemory(mat,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr); 3326b24ad042SBarry Smith ierr = PetscMemcpy(a->colmap,oldmat->colmap,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr); 332748e59246SSatish Balay #endif 33280ac07820SSatish Balay } else a->colmap = 0; 33294beb1cfeSHong Zhang 33300ac07820SSatish Balay if (oldmat->garray && (len = ((Mat_SeqBAIJ*)(oldmat->B->data))->nbs)) { 3331b24ad042SBarry Smith ierr = PetscMalloc(len*sizeof(PetscInt),&a->garray);CHKERRQ(ierr); 333252e6d16bSBarry Smith ierr = PetscLogObjectMemory(mat,len*sizeof(PetscInt));CHKERRQ(ierr); 3333b24ad042SBarry Smith ierr = PetscMemcpy(a->garray,oldmat->garray,len*sizeof(PetscInt));CHKERRQ(ierr); 33340ac07820SSatish Balay } else a->garray = 0; 33350ac07820SSatish Balay 3336533163c2SBarry Smith ierr = MatStashCreate_Private(((PetscObject)matin)->comm,matin->rmap->bs,&mat->bstash);CHKERRQ(ierr); 33370ac07820SSatish Balay ierr = VecDuplicate(oldmat->lvec,&a->lvec);CHKERRQ(ierr); 333852e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->lvec);CHKERRQ(ierr); 33390ac07820SSatish Balay ierr = VecScatterCopy(oldmat->Mvctx,&a->Mvctx);CHKERRQ(ierr); 334052e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->Mvctx);CHKERRQ(ierr); 33417fff6886SHong Zhang 33422e8a6d31SBarry Smith ierr = MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr); 334352e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->A);CHKERRQ(ierr); 33442e8a6d31SBarry Smith ierr = MatDuplicate(oldmat->B,cpvalues,&a->B);CHKERRQ(ierr); 334552e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->B);CHKERRQ(ierr); 33467adad957SLisandro Dalcin ierr = PetscFListDuplicate(((PetscObject)matin)->qlist,&((PetscObject)mat)->qlist);CHKERRQ(ierr); 33470ac07820SSatish Balay *newmat = mat; 33484beb1cfeSHong Zhang 33493a40ed3dSBarry Smith PetscFunctionReturn(0); 33500ac07820SSatish Balay } 335157b952d6SSatish Balay 33524a2ae208SSatish Balay #undef __FUNCT__ 33534a2ae208SSatish Balay #define __FUNCT__ "MatLoad_MPIBAIJ" 3354a313700dSBarry Smith PetscErrorCode MatLoad_MPIBAIJ(PetscViewer viewer, const MatType type,Mat *newmat) 335557b952d6SSatish Balay { 335657b952d6SSatish Balay Mat A; 33576849ba73SBarry Smith PetscErrorCode ierr; 3358b24ad042SBarry Smith int fd; 3359b24ad042SBarry Smith PetscInt i,nz,j,rstart,rend; 336087828ca2SBarry Smith PetscScalar *vals,*buf; 336157b952d6SSatish Balay MPI_Comm comm = ((PetscObject)viewer)->comm; 336257b952d6SSatish Balay MPI_Status status; 3363b24ad042SBarry Smith PetscMPIInt rank,size,maxnz; 3364b24ad042SBarry Smith PetscInt header[4],*rowlengths = 0,M,N,m,*rowners,*cols; 3365910ba992SMatthew Knepley PetscInt *locrowlens = PETSC_NULL,*procsnz = PETSC_NULL,*browners = PETSC_NULL; 3366167e7480SBarry Smith PetscInt jj,*mycols,*ibuf,bs=1,Mbs,mbs,extra_rows,mmax; 3367dc231df0SBarry Smith PetscMPIInt tag = ((PetscObject)viewer)->tag; 3368910ba992SMatthew Knepley PetscInt *dlens = PETSC_NULL,*odlens = PETSC_NULL,*mask = PETSC_NULL,*masked1 = PETSC_NULL,*masked2 = PETSC_NULL,rowcount,odcount; 3369dc231df0SBarry Smith PetscInt dcount,kmax,k,nzcount,tmp,mend; 337057b952d6SSatish Balay 3371d64ed03dSBarry Smith PetscFunctionBegin; 337277925062SSatish Balay ierr = PetscOptionsBegin(comm,PETSC_NULL,"Options for loading MPIBAIJ matrix 2","Mat");CHKERRQ(ierr); 33738c07d4e3SBarry Smith ierr = PetscOptionsInt("-matload_block_size","Set the blocksize used to store the matrix","MatLoad",bs,&bs,PETSC_NULL);CHKERRQ(ierr); 33748c07d4e3SBarry Smith ierr = PetscOptionsEnd();CHKERRQ(ierr); 337557b952d6SSatish Balay 3376d132466eSBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 3377d132466eSBarry Smith ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 337857b952d6SSatish Balay if (!rank) { 3379b0a32e0cSBarry Smith ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr); 3380e5638eb3SBarry Smith ierr = PetscBinaryRead(fd,(char *)header,4,PETSC_INT);CHKERRQ(ierr); 3381e32f2f54SBarry Smith if (header[0] != MAT_FILE_CLASSID) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"not matrix object"); 33826c5fab8fSBarry Smith } 3383d64ed03dSBarry Smith 3384b24ad042SBarry Smith ierr = MPI_Bcast(header+1,3,MPIU_INT,0,comm);CHKERRQ(ierr); 338557b952d6SSatish Balay M = header[1]; N = header[2]; 338657b952d6SSatish Balay 3387e7e72b3dSBarry Smith if (M != N) SETERRQ(((PetscObject)viewer)->comm,PETSC_ERR_SUP,"Can only do square matrices"); 338857b952d6SSatish Balay 338957b952d6SSatish Balay /* 339057b952d6SSatish Balay This code adds extra rows to make sure the number of rows is 339157b952d6SSatish Balay divisible by the blocksize 339257b952d6SSatish Balay */ 339357b952d6SSatish Balay Mbs = M/bs; 3394dc231df0SBarry Smith extra_rows = bs - M + bs*Mbs; 339557b952d6SSatish Balay if (extra_rows == bs) extra_rows = 0; 339657b952d6SSatish Balay else Mbs++; 339757b952d6SSatish Balay if (extra_rows && !rank) { 33981e2582c4SBarry Smith ierr = PetscInfo(viewer,"Padding loaded matrix to match blocksize\n");CHKERRQ(ierr); 339957b952d6SSatish Balay } 3400537820f0SBarry Smith 340157b952d6SSatish Balay /* determine ownership of all rows */ 340257b952d6SSatish Balay mbs = Mbs/size + ((Mbs % size) > rank); 340357b952d6SSatish Balay m = mbs*bs; 3404dc231df0SBarry Smith ierr = PetscMalloc2(size+1,PetscInt,&rowners,size+1,PetscInt,&browners);CHKERRQ(ierr); 3405b24ad042SBarry Smith ierr = MPI_Allgather(&mbs,1,MPIU_INT,rowners+1,1,MPIU_INT,comm);CHKERRQ(ierr); 3406167e7480SBarry Smith 3407167e7480SBarry Smith /* process 0 needs enough room for process with most rows */ 3408167e7480SBarry Smith if (!rank) { 3409167e7480SBarry Smith mmax = rowners[1]; 3410167e7480SBarry Smith for (i=2; i<size; i++) { 3411167e7480SBarry Smith mmax = PetscMax(mmax,rowners[i]); 3412167e7480SBarry Smith } 3413ca02efcfSSatish Balay mmax*=bs; 3414167e7480SBarry Smith } else mmax = m; 3415167e7480SBarry Smith 341657b952d6SSatish Balay rowners[0] = 0; 3417cee3aa6bSSatish Balay for (i=2; i<=size; i++) rowners[i] += rowners[i-1]; 3418cee3aa6bSSatish Balay for (i=0; i<=size; i++) browners[i] = rowners[i]*bs; 341957b952d6SSatish Balay rstart = rowners[rank]; 342057b952d6SSatish Balay rend = rowners[rank+1]; 342157b952d6SSatish Balay 342257b952d6SSatish Balay /* distribute row lengths to all processors */ 342319c38ff2SBarry Smith ierr = PetscMalloc((mmax+1)*sizeof(PetscInt),&locrowlens);CHKERRQ(ierr); 342457b952d6SSatish Balay if (!rank) { 3425dc231df0SBarry Smith mend = m; 3426dc231df0SBarry Smith if (size == 1) mend = mend - extra_rows; 3427dc231df0SBarry Smith ierr = PetscBinaryRead(fd,locrowlens,mend,PETSC_INT);CHKERRQ(ierr); 3428dc231df0SBarry Smith for (j=mend; j<m; j++) locrowlens[j] = 1; 3429dc231df0SBarry Smith ierr = PetscMalloc(m*sizeof(PetscInt),&rowlengths);CHKERRQ(ierr); 3430b24ad042SBarry Smith ierr = PetscMalloc(size*sizeof(PetscInt),&procsnz);CHKERRQ(ierr); 3431b24ad042SBarry Smith ierr = PetscMemzero(procsnz,size*sizeof(PetscInt));CHKERRQ(ierr); 3432dc231df0SBarry Smith for (j=0; j<m; j++) { 3433dc231df0SBarry Smith procsnz[0] += locrowlens[j]; 3434dc231df0SBarry Smith } 3435dc231df0SBarry Smith for (i=1; i<size; i++) { 3436dc231df0SBarry Smith mend = browners[i+1] - browners[i]; 3437dc231df0SBarry Smith if (i == size-1) mend = mend - extra_rows; 3438dc231df0SBarry Smith ierr = PetscBinaryRead(fd,rowlengths,mend,PETSC_INT);CHKERRQ(ierr); 3439dc231df0SBarry Smith for (j=mend; j<browners[i+1] - browners[i]; j++) rowlengths[j] = 1; 3440dc231df0SBarry Smith /* calculate the number of nonzeros on each processor */ 3441dc231df0SBarry Smith for (j=0; j<browners[i+1]-browners[i]; j++) { 344257b952d6SSatish Balay procsnz[i] += rowlengths[j]; 344357b952d6SSatish Balay } 3444dc231df0SBarry Smith ierr = MPI_Send(rowlengths,browners[i+1]-browners[i],MPIU_INT,i,tag,comm);CHKERRQ(ierr); 344557b952d6SSatish Balay } 3446606d414cSSatish Balay ierr = PetscFree(rowlengths);CHKERRQ(ierr); 3447dc231df0SBarry Smith } else { 3448dc231df0SBarry Smith ierr = MPI_Recv(locrowlens,m,MPIU_INT,0,tag,comm,&status);CHKERRQ(ierr); 3449dc231df0SBarry Smith } 345057b952d6SSatish Balay 3451dc231df0SBarry Smith if (!rank) { 345257b952d6SSatish Balay /* determine max buffer needed and allocate it */ 34538a8e0b3aSBarry Smith maxnz = procsnz[0]; 3454cdc0ba36SBarry Smith for (i=1; i<size; i++) { 345557b952d6SSatish Balay maxnz = PetscMax(maxnz,procsnz[i]); 345657b952d6SSatish Balay } 3457b24ad042SBarry Smith ierr = PetscMalloc(maxnz*sizeof(PetscInt),&cols);CHKERRQ(ierr); 345857b952d6SSatish Balay 345957b952d6SSatish Balay /* read in my part of the matrix column indices */ 346057b952d6SSatish Balay nz = procsnz[0]; 346119c38ff2SBarry Smith ierr = PetscMalloc((nz+1)*sizeof(PetscInt),&ibuf);CHKERRQ(ierr); 346257b952d6SSatish Balay mycols = ibuf; 3463cee3aa6bSSatish Balay if (size == 1) nz -= extra_rows; 3464e5638eb3SBarry Smith ierr = PetscBinaryRead(fd,mycols,nz,PETSC_INT);CHKERRQ(ierr); 3465cee3aa6bSSatish Balay if (size == 1) for (i=0; i< extra_rows; i++) { mycols[nz+i] = M+i; } 3466cee3aa6bSSatish Balay 346757b952d6SSatish Balay /* read in every ones (except the last) and ship off */ 346857b952d6SSatish Balay for (i=1; i<size-1; i++) { 346957b952d6SSatish Balay nz = procsnz[i]; 3470e5638eb3SBarry Smith ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr); 3471b24ad042SBarry Smith ierr = MPI_Send(cols,nz,MPIU_INT,i,tag,comm);CHKERRQ(ierr); 347257b952d6SSatish Balay } 347357b952d6SSatish Balay /* read in the stuff for the last proc */ 347457b952d6SSatish Balay if (size != 1) { 347557b952d6SSatish Balay nz = procsnz[size-1] - extra_rows; /* the extra rows are not on the disk */ 3476e5638eb3SBarry Smith ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr); 347757b952d6SSatish Balay for (i=0; i<extra_rows; i++) cols[nz+i] = M+i; 3478b24ad042SBarry Smith ierr = MPI_Send(cols,nz+extra_rows,MPIU_INT,size-1,tag,comm);CHKERRQ(ierr); 347957b952d6SSatish Balay } 3480606d414cSSatish Balay ierr = PetscFree(cols);CHKERRQ(ierr); 3481d64ed03dSBarry Smith } else { 348257b952d6SSatish Balay /* determine buffer space needed for message */ 348357b952d6SSatish Balay nz = 0; 348457b952d6SSatish Balay for (i=0; i<m; i++) { 348557b952d6SSatish Balay nz += locrowlens[i]; 348657b952d6SSatish Balay } 348719c38ff2SBarry Smith ierr = PetscMalloc((nz+1)*sizeof(PetscInt),&ibuf);CHKERRQ(ierr); 348857b952d6SSatish Balay mycols = ibuf; 348957b952d6SSatish Balay /* receive message of column indices*/ 3490b24ad042SBarry Smith ierr = MPI_Recv(mycols,nz,MPIU_INT,0,tag,comm,&status);CHKERRQ(ierr); 3491b24ad042SBarry Smith ierr = MPI_Get_count(&status,MPIU_INT,&maxnz);CHKERRQ(ierr); 3492e32f2f54SBarry Smith if (maxnz != nz) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 349357b952d6SSatish Balay } 349457b952d6SSatish Balay 349557b952d6SSatish Balay /* loop over local rows, determining number of off diagonal entries */ 3496dc231df0SBarry Smith ierr = PetscMalloc2(rend-rstart,PetscInt,&dlens,rend-rstart,PetscInt,&odlens);CHKERRQ(ierr); 3497dc231df0SBarry Smith ierr = PetscMalloc3(Mbs,PetscInt,&mask,Mbs,PetscInt,&masked1,Mbs,PetscInt,&masked2);CHKERRQ(ierr); 3498dc231df0SBarry Smith ierr = PetscMemzero(mask,Mbs*sizeof(PetscInt));CHKERRQ(ierr); 3499dc231df0SBarry Smith ierr = PetscMemzero(masked1,Mbs*sizeof(PetscInt));CHKERRQ(ierr); 3500dc231df0SBarry Smith ierr = PetscMemzero(masked2,Mbs*sizeof(PetscInt));CHKERRQ(ierr); 350157b952d6SSatish Balay rowcount = 0; nzcount = 0; 350257b952d6SSatish Balay for (i=0; i<mbs; i++) { 350357b952d6SSatish Balay dcount = 0; 350457b952d6SSatish Balay odcount = 0; 350557b952d6SSatish Balay for (j=0; j<bs; j++) { 350657b952d6SSatish Balay kmax = locrowlens[rowcount]; 350757b952d6SSatish Balay for (k=0; k<kmax; k++) { 350857b952d6SSatish Balay tmp = mycols[nzcount++]/bs; 350957b952d6SSatish Balay if (!mask[tmp]) { 351057b952d6SSatish Balay mask[tmp] = 1; 351157b952d6SSatish Balay if (tmp < rstart || tmp >= rend) masked2[odcount++] = tmp; 351257b952d6SSatish Balay else masked1[dcount++] = tmp; 351357b952d6SSatish Balay } 351457b952d6SSatish Balay } 351557b952d6SSatish Balay rowcount++; 351657b952d6SSatish Balay } 3517cee3aa6bSSatish Balay 351857b952d6SSatish Balay dlens[i] = dcount; 351957b952d6SSatish Balay odlens[i] = odcount; 3520cee3aa6bSSatish Balay 352157b952d6SSatish Balay /* zero out the mask elements we set */ 352257b952d6SSatish Balay for (j=0; j<dcount; j++) mask[masked1[j]] = 0; 352357b952d6SSatish Balay for (j=0; j<odcount; j++) mask[masked2[j]] = 0; 352457b952d6SSatish Balay } 3525cee3aa6bSSatish Balay 352657b952d6SSatish Balay /* create our matrix */ 3527f69a0ea3SMatthew Knepley ierr = MatCreate(comm,&A);CHKERRQ(ierr); 3528f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,m,m,M+extra_rows,N+extra_rows);CHKERRQ(ierr); 3529cb9801acSJed Brown ierr = MatSetType(A,type);CHKERRQ(ierr); 353078ae41b4SKris Buschelman ierr = MatMPIBAIJSetPreallocation(A,bs,0,dlens,0,odlens);CHKERRQ(ierr); 353178ae41b4SKris Buschelman 353257b952d6SSatish Balay if (!rank) { 353319c38ff2SBarry Smith ierr = PetscMalloc((maxnz+1)*sizeof(PetscScalar),&buf);CHKERRQ(ierr); 353457b952d6SSatish Balay /* read in my part of the matrix numerical values */ 353557b952d6SSatish Balay nz = procsnz[0]; 353657b952d6SSatish Balay vals = buf; 3537cee3aa6bSSatish Balay mycols = ibuf; 3538cee3aa6bSSatish Balay if (size == 1) nz -= extra_rows; 3539e5638eb3SBarry Smith ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 3540cee3aa6bSSatish Balay if (size == 1) for (i=0; i< extra_rows; i++) { vals[nz+i] = 1.0; } 3541537820f0SBarry Smith 354257b952d6SSatish Balay /* insert into matrix */ 354357b952d6SSatish Balay jj = rstart*bs; 354457b952d6SSatish Balay for (i=0; i<m; i++) { 3545dc231df0SBarry Smith ierr = MatSetValues_MPIBAIJ(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr); 354657b952d6SSatish Balay mycols += locrowlens[i]; 354757b952d6SSatish Balay vals += locrowlens[i]; 354857b952d6SSatish Balay jj++; 354957b952d6SSatish Balay } 355057b952d6SSatish Balay /* read in other processors (except the last one) and ship out */ 355157b952d6SSatish Balay for (i=1; i<size-1; i++) { 355257b952d6SSatish Balay nz = procsnz[i]; 355357b952d6SSatish Balay vals = buf; 3554e5638eb3SBarry Smith ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 35557adad957SLisandro Dalcin ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,((PetscObject)A)->tag,comm);CHKERRQ(ierr); 355657b952d6SSatish Balay } 355757b952d6SSatish Balay /* the last proc */ 355857b952d6SSatish Balay if (size != 1){ 355957b952d6SSatish Balay nz = procsnz[i] - extra_rows; 3560cee3aa6bSSatish Balay vals = buf; 3561e5638eb3SBarry Smith ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 356257b952d6SSatish Balay for (i=0; i<extra_rows; i++) vals[nz+i] = 1.0; 35637adad957SLisandro Dalcin ierr = MPI_Send(vals,nz+extra_rows,MPIU_SCALAR,size-1,((PetscObject)A)->tag,comm);CHKERRQ(ierr); 356457b952d6SSatish Balay } 3565606d414cSSatish Balay ierr = PetscFree(procsnz);CHKERRQ(ierr); 3566d64ed03dSBarry Smith } else { 356757b952d6SSatish Balay /* receive numeric values */ 356819c38ff2SBarry Smith ierr = PetscMalloc((nz+1)*sizeof(PetscScalar),&buf);CHKERRQ(ierr); 356957b952d6SSatish Balay 357057b952d6SSatish Balay /* receive message of values*/ 357157b952d6SSatish Balay vals = buf; 3572cee3aa6bSSatish Balay mycols = ibuf; 35737adad957SLisandro Dalcin ierr = MPI_Recv(vals,nz,MPIU_SCALAR,0,((PetscObject)A)->tag,comm,&status);CHKERRQ(ierr); 3574ca161407SBarry Smith ierr = MPI_Get_count(&status,MPIU_SCALAR,&maxnz);CHKERRQ(ierr); 3575e32f2f54SBarry Smith if (maxnz != nz) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 357657b952d6SSatish Balay 357757b952d6SSatish Balay /* insert into matrix */ 357857b952d6SSatish Balay jj = rstart*bs; 3579cee3aa6bSSatish Balay for (i=0; i<m; i++) { 3580dc231df0SBarry Smith ierr = MatSetValues_MPIBAIJ(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr); 358157b952d6SSatish Balay mycols += locrowlens[i]; 358257b952d6SSatish Balay vals += locrowlens[i]; 358357b952d6SSatish Balay jj++; 358457b952d6SSatish Balay } 358557b952d6SSatish Balay } 3586606d414cSSatish Balay ierr = PetscFree(locrowlens);CHKERRQ(ierr); 3587606d414cSSatish Balay ierr = PetscFree(buf);CHKERRQ(ierr); 3588606d414cSSatish Balay ierr = PetscFree(ibuf);CHKERRQ(ierr); 3589dc231df0SBarry Smith ierr = PetscFree2(rowners,browners);CHKERRQ(ierr); 3590dc231df0SBarry Smith ierr = PetscFree2(dlens,odlens);CHKERRQ(ierr); 3591dc231df0SBarry Smith ierr = PetscFree3(mask,masked1,masked2);CHKERRQ(ierr); 35926d4a8577SBarry Smith ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 35936d4a8577SBarry Smith ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 359478ae41b4SKris Buschelman 359578ae41b4SKris Buschelman *newmat = A; 35963a40ed3dSBarry Smith PetscFunctionReturn(0); 359757b952d6SSatish Balay } 359857b952d6SSatish Balay 35994a2ae208SSatish Balay #undef __FUNCT__ 36004a2ae208SSatish Balay #define __FUNCT__ "MatMPIBAIJSetHashTableFactor" 3601133cdb44SSatish Balay /*@ 3602133cdb44SSatish Balay MatMPIBAIJSetHashTableFactor - Sets the factor required to compute the size of the HashTable. 3603133cdb44SSatish Balay 3604133cdb44SSatish Balay Input Parameters: 3605133cdb44SSatish Balay . mat - the matrix 3606133cdb44SSatish Balay . fact - factor 3607133cdb44SSatish Balay 3608fee21e36SBarry Smith Collective on Mat 3609fee21e36SBarry Smith 36108c890885SBarry Smith Level: advanced 36118c890885SBarry Smith 3612133cdb44SSatish Balay Notes: 36138c07d4e3SBarry Smith This can also be set by the command line option: -mat_use_hash_table <fact> 3614133cdb44SSatish Balay 3615133cdb44SSatish Balay .keywords: matrix, hashtable, factor, HT 3616133cdb44SSatish Balay 3617133cdb44SSatish Balay .seealso: MatSetOption() 3618133cdb44SSatish Balay @*/ 3619be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPIBAIJSetHashTableFactor(Mat mat,PetscReal fact) 3620133cdb44SSatish Balay { 3621dfbe8321SBarry Smith PetscErrorCode ierr,(*f)(Mat,PetscReal); 36225bf65638SKris Buschelman 36235bf65638SKris Buschelman PetscFunctionBegin; 36245bf65638SKris Buschelman ierr = PetscObjectQueryFunction((PetscObject)mat,"MatSetHashTableFactor_C",(void (**)(void))&f);CHKERRQ(ierr); 36255bf65638SKris Buschelman if (f) { 36265bf65638SKris Buschelman ierr = (*f)(mat,fact);CHKERRQ(ierr); 36275bf65638SKris Buschelman } 36285bf65638SKris Buschelman PetscFunctionReturn(0); 36295bf65638SKris Buschelman } 36305bf65638SKris Buschelman 3631be1d678aSKris Buschelman EXTERN_C_BEGIN 36325bf65638SKris Buschelman #undef __FUNCT__ 36335bf65638SKris Buschelman #define __FUNCT__ "MatSetHashTableFactor_MPIBAIJ" 3634be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatSetHashTableFactor_MPIBAIJ(Mat mat,PetscReal fact) 36355bf65638SKris Buschelman { 363625fdafccSSatish Balay Mat_MPIBAIJ *baij; 3637133cdb44SSatish Balay 3638133cdb44SSatish Balay PetscFunctionBegin; 3639133cdb44SSatish Balay baij = (Mat_MPIBAIJ*)mat->data; 3640133cdb44SSatish Balay baij->ht_fact = fact; 3641133cdb44SSatish Balay PetscFunctionReturn(0); 3642133cdb44SSatish Balay } 3643be1d678aSKris Buschelman EXTERN_C_END 3644f2a5309cSSatish Balay 36454a2ae208SSatish Balay #undef __FUNCT__ 36464a2ae208SSatish Balay #define __FUNCT__ "MatMPIBAIJGetSeqBAIJ" 3647be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPIBAIJGetSeqBAIJ(Mat A,Mat *Ad,Mat *Ao,PetscInt *colmap[]) 3648f2a5309cSSatish Balay { 3649f2a5309cSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 3650f2a5309cSSatish Balay PetscFunctionBegin; 3651f2a5309cSSatish Balay *Ad = a->A; 3652f2a5309cSSatish Balay *Ao = a->B; 3653195d93cdSBarry Smith *colmap = a->garray; 3654f2a5309cSSatish Balay PetscFunctionReturn(0); 3655f2a5309cSSatish Balay } 365685535b8eSBarry Smith 365785535b8eSBarry Smith /* 365885535b8eSBarry Smith Special version for direct calls from Fortran (to eliminate two function call overheads 365985535b8eSBarry Smith */ 366085535b8eSBarry Smith #if defined(PETSC_HAVE_FORTRAN_CAPS) 366185535b8eSBarry Smith #define matmpibaijsetvaluesblocked_ MATMPIBAIJSETVALUESBLOCKED 366285535b8eSBarry Smith #elif !defined(PETSC_HAVE_FORTRAN_UNDERSCORE) 366385535b8eSBarry Smith #define matmpibaijsetvaluesblocked_ matmpibaijsetvaluesblocked 366485535b8eSBarry Smith #endif 366585535b8eSBarry Smith 366685535b8eSBarry Smith #undef __FUNCT__ 366785535b8eSBarry Smith #define __FUNCT__ "matmpibiajsetvaluesblocked" 366885535b8eSBarry Smith /*@C 366985535b8eSBarry Smith MatMPIBAIJSetValuesBlocked - Direct Fortran call to replace call to MatSetValuesBlocked() 367085535b8eSBarry Smith 367185535b8eSBarry Smith Collective on Mat 367285535b8eSBarry Smith 367385535b8eSBarry Smith Input Parameters: 367485535b8eSBarry Smith + mat - the matrix 367585535b8eSBarry Smith . min - number of input rows 367685535b8eSBarry Smith . im - input rows 367785535b8eSBarry Smith . nin - number of input columns 367885535b8eSBarry Smith . in - input columns 367985535b8eSBarry Smith . v - numerical values input 368085535b8eSBarry Smith - addvin - INSERT_VALUES or ADD_VALUES 368185535b8eSBarry Smith 368285535b8eSBarry Smith Notes: This has a complete copy of MatSetValuesBlocked_MPIBAIJ() which is terrible code un-reuse. 368385535b8eSBarry Smith 368485535b8eSBarry Smith Level: advanced 368585535b8eSBarry Smith 368685535b8eSBarry Smith .seealso: MatSetValuesBlocked() 368785535b8eSBarry Smith @*/ 368885535b8eSBarry Smith PetscErrorCode matmpibaijsetvaluesblocked_(Mat *matin,PetscInt *min,const PetscInt im[],PetscInt *nin,const PetscInt in[],const MatScalar v[],InsertMode *addvin) 368985535b8eSBarry Smith { 369085535b8eSBarry Smith /* convert input arguments to C version */ 369185535b8eSBarry Smith Mat mat = *matin; 369285535b8eSBarry Smith PetscInt m = *min, n = *nin; 369385535b8eSBarry Smith InsertMode addv = *addvin; 369485535b8eSBarry Smith 369585535b8eSBarry Smith Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 369685535b8eSBarry Smith const MatScalar *value; 369785535b8eSBarry Smith MatScalar *barray=baij->barray; 369885535b8eSBarry Smith PetscTruth roworiented = baij->roworiented; 369985535b8eSBarry Smith PetscErrorCode ierr; 370085535b8eSBarry Smith PetscInt i,j,ii,jj,row,col,rstart=baij->rstartbs; 370185535b8eSBarry Smith PetscInt rend=baij->rendbs,cstart=baij->cstartbs,stepval; 3702d0f46423SBarry Smith PetscInt cend=baij->cendbs,bs=mat->rmap->bs,bs2=baij->bs2; 370385535b8eSBarry Smith 370485535b8eSBarry Smith PetscFunctionBegin; 370585535b8eSBarry Smith /* tasks normally handled by MatSetValuesBlocked() */ 370685535b8eSBarry Smith if (mat->insertmode == NOT_SET_VALUES) { 370785535b8eSBarry Smith mat->insertmode = addv; 370885535b8eSBarry Smith } 370985535b8eSBarry Smith #if defined(PETSC_USE_DEBUG) 3710e7e72b3dSBarry Smith else if (mat->insertmode != addv) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Cannot mix add values and insert values"); 3711e32f2f54SBarry Smith if (mat->factortype) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Not for factored matrix"); 371285535b8eSBarry Smith #endif 371385535b8eSBarry Smith if (mat->assembled) { 371485535b8eSBarry Smith mat->was_assembled = PETSC_TRUE; 371585535b8eSBarry Smith mat->assembled = PETSC_FALSE; 371685535b8eSBarry Smith } 371785535b8eSBarry Smith ierr = PetscLogEventBegin(MAT_SetValues,mat,0,0,0);CHKERRQ(ierr); 371885535b8eSBarry Smith 371985535b8eSBarry Smith 372085535b8eSBarry Smith if(!barray) { 372185535b8eSBarry Smith ierr = PetscMalloc(bs2*sizeof(MatScalar),&barray);CHKERRQ(ierr); 372285535b8eSBarry Smith baij->barray = barray; 372385535b8eSBarry Smith } 372485535b8eSBarry Smith 372585535b8eSBarry Smith if (roworiented) { 372685535b8eSBarry Smith stepval = (n-1)*bs; 372785535b8eSBarry Smith } else { 372885535b8eSBarry Smith stepval = (m-1)*bs; 372985535b8eSBarry Smith } 373085535b8eSBarry Smith for (i=0; i<m; i++) { 373185535b8eSBarry Smith if (im[i] < 0) continue; 373285535b8eSBarry Smith #if defined(PETSC_USE_DEBUG) 3733e32f2f54SBarry Smith if (im[i] >= baij->Mbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large, row %D max %D",im[i],baij->Mbs-1); 373485535b8eSBarry Smith #endif 373585535b8eSBarry Smith if (im[i] >= rstart && im[i] < rend) { 373685535b8eSBarry Smith row = im[i] - rstart; 373785535b8eSBarry Smith for (j=0; j<n; j++) { 373885535b8eSBarry Smith /* If NumCol = 1 then a copy is not required */ 373985535b8eSBarry Smith if ((roworiented) && (n == 1)) { 374085535b8eSBarry Smith barray = (MatScalar*)v + i*bs2; 374185535b8eSBarry Smith } else if((!roworiented) && (m == 1)) { 374285535b8eSBarry Smith barray = (MatScalar*)v + j*bs2; 374385535b8eSBarry Smith } else { /* Here a copy is required */ 374485535b8eSBarry Smith if (roworiented) { 374585535b8eSBarry Smith value = v + i*(stepval+bs)*bs + j*bs; 374685535b8eSBarry Smith } else { 374785535b8eSBarry Smith value = v + j*(stepval+bs)*bs + i*bs; 374885535b8eSBarry Smith } 374985535b8eSBarry Smith for (ii=0; ii<bs; ii++,value+=stepval) { 375085535b8eSBarry Smith for (jj=0; jj<bs; jj++) { 375185535b8eSBarry Smith *barray++ = *value++; 375285535b8eSBarry Smith } 375385535b8eSBarry Smith } 375485535b8eSBarry Smith barray -=bs2; 375585535b8eSBarry Smith } 375685535b8eSBarry Smith 375785535b8eSBarry Smith if (in[j] >= cstart && in[j] < cend){ 375885535b8eSBarry Smith col = in[j] - cstart; 375997e5c40aSBarry Smith ierr = MatSetValuesBlocked_SeqBAIJ(baij->A,1,&row,1,&col,barray,addv);CHKERRQ(ierr); 376085535b8eSBarry Smith } 376185535b8eSBarry Smith else if (in[j] < 0) continue; 376285535b8eSBarry Smith #if defined(PETSC_USE_DEBUG) 3763cb9801acSJed Brown else if (in[j] >= baij->Nbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large, col %D max %D",in[j],baij->Nbs-1); 376485535b8eSBarry Smith #endif 376585535b8eSBarry Smith else { 376685535b8eSBarry Smith if (mat->was_assembled) { 376785535b8eSBarry Smith if (!baij->colmap) { 376885535b8eSBarry Smith ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 376985535b8eSBarry Smith } 377085535b8eSBarry Smith 377185535b8eSBarry Smith #if defined(PETSC_USE_DEBUG) 377285535b8eSBarry Smith #if defined (PETSC_USE_CTABLE) 377385535b8eSBarry Smith { PetscInt data; 377485535b8eSBarry Smith ierr = PetscTableFind(baij->colmap,in[j]+1,&data);CHKERRQ(ierr); 3775e32f2f54SBarry Smith if ((data - 1) % bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap"); 377685535b8eSBarry Smith } 377785535b8eSBarry Smith #else 3778e32f2f54SBarry Smith if ((baij->colmap[in[j]] - 1) % bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap"); 377985535b8eSBarry Smith #endif 378085535b8eSBarry Smith #endif 378185535b8eSBarry Smith #if defined (PETSC_USE_CTABLE) 378285535b8eSBarry Smith ierr = PetscTableFind(baij->colmap,in[j]+1,&col);CHKERRQ(ierr); 378385535b8eSBarry Smith col = (col - 1)/bs; 378485535b8eSBarry Smith #else 378585535b8eSBarry Smith col = (baij->colmap[in[j]] - 1)/bs; 378685535b8eSBarry Smith #endif 378785535b8eSBarry Smith if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) { 378885535b8eSBarry Smith ierr = DisAssemble_MPIBAIJ(mat);CHKERRQ(ierr); 378985535b8eSBarry Smith col = in[j]; 379085535b8eSBarry Smith } 379185535b8eSBarry Smith } 379285535b8eSBarry Smith else col = in[j]; 379397e5c40aSBarry Smith ierr = MatSetValuesBlocked_SeqBAIJ(baij->B,1,&row,1,&col,barray,addv);CHKERRQ(ierr); 379485535b8eSBarry Smith } 379585535b8eSBarry Smith } 379685535b8eSBarry Smith } else { 379785535b8eSBarry Smith if (!baij->donotstash) { 379885535b8eSBarry Smith if (roworiented) { 379985535b8eSBarry Smith ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 380085535b8eSBarry Smith } else { 380185535b8eSBarry Smith ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 380285535b8eSBarry Smith } 380385535b8eSBarry Smith } 380485535b8eSBarry Smith } 380585535b8eSBarry Smith } 380685535b8eSBarry Smith 380785535b8eSBarry Smith /* task normally handled by MatSetValuesBlocked() */ 380885535b8eSBarry Smith ierr = PetscLogEventEnd(MAT_SetValues,mat,0,0,0);CHKERRQ(ierr); 380985535b8eSBarry Smith PetscFunctionReturn(0); 381085535b8eSBarry Smith } 3811