1bba1ac68SSatish Balay /*$Id: mpibaij.c,v 1.234 2001/09/25 22:56:49 balay Exp $*/ 279bdfe76SSatish Balay 3e090d566SSatish Balay #include "src/mat/impls/baij/mpi/mpibaij.h" /*I "petscmat.h" I*/ 479bdfe76SSatish Balay 5ca44d042SBarry Smith EXTERN int MatSetUpMultiply_MPIBAIJ(Mat); 6ca44d042SBarry Smith EXTERN int DisAssemble_MPIBAIJ(Mat); 7268466fbSBarry Smith EXTERN int MatIncreaseOverlap_MPIBAIJ(Mat,int,IS[],int); 8268466fbSBarry Smith EXTERN int MatGetSubMatrices_MPIBAIJ(Mat,int,const IS[],const IS[],MatReuse,Mat *[]); 9f15d580aSBarry Smith EXTERN int MatGetValues_SeqBAIJ(Mat,int,const int[],int,const int [],PetscScalar []); 10f15d580aSBarry Smith EXTERN int MatSetValues_SeqBAIJ(Mat,int,const int[],int,const int [],const PetscScalar [],InsertMode); 11f15d580aSBarry Smith EXTERN int MatSetValuesBlocked_SeqBAIJ(Mat,int,const int[],int,const int[],const PetscScalar[],InsertMode); 12268466fbSBarry Smith EXTERN int MatGetRow_SeqBAIJ(Mat,int,int*,int*[],PetscScalar*[]); 13268466fbSBarry Smith EXTERN int MatRestoreRow_SeqBAIJ(Mat,int,int*,int*[],PetscScalar*[]); 14ca44d042SBarry Smith EXTERN int MatPrintHelp_SeqBAIJ(Mat); 15268466fbSBarry Smith EXTERN int MatZeroRows_SeqBAIJ(Mat,IS,const PetscScalar*); 1693fea6afSBarry Smith 1793fea6afSBarry Smith /* UGLY, ugly, ugly 1887828ca2SBarry Smith When MatScalar == PetscScalar the function MatSetValuesBlocked_MPIBAIJ_MatScalar() does 1993fea6afSBarry Smith not exist. Otherwise ..._MatScalar() takes matrix elements in single precision and 2093fea6afSBarry Smith inserts them into the single precision data structure. The function MatSetValuesBlocked_MPIBAIJ() 2193fea6afSBarry Smith converts the entries into single precision and then calls ..._MatScalar() to put them 2293fea6afSBarry Smith into the single precision data structures. 2393fea6afSBarry Smith */ 2493fea6afSBarry Smith #if defined(PETSC_USE_MAT_SINGLE) 2534232ad1SSatish Balay EXTERN int MatSetValuesBlocked_SeqBAIJ_MatScalar(Mat,int,const int*,int,const int*,const MatScalar*,InsertMode); 2634232ad1SSatish Balay EXTERN int MatSetValues_MPIBAIJ_MatScalar(Mat,int,const int*,int,const int*,const MatScalar*,InsertMode); 2734232ad1SSatish Balay EXTERN int MatSetValuesBlocked_MPIBAIJ_MatScalar(Mat,int,const int*,int,const int*,const MatScalar*,InsertMode); 2834232ad1SSatish Balay EXTERN int MatSetValues_MPIBAIJ_HT_MatScalar(Mat,int,const int*,int,const int*,const MatScalar*,InsertMode); 2934232ad1SSatish Balay EXTERN int MatSetValuesBlocked_MPIBAIJ_HT_MatScalar(Mat,int,const int*,int,const int*,const MatScalar*,InsertMode); 3093fea6afSBarry Smith #else 316fa18ffdSBarry Smith #define MatSetValuesBlocked_SeqBAIJ_MatScalar MatSetValuesBlocked_SeqBAIJ 3293fea6afSBarry Smith #define MatSetValues_MPIBAIJ_MatScalar MatSetValues_MPIBAIJ 3393fea6afSBarry Smith #define MatSetValuesBlocked_MPIBAIJ_MatScalar MatSetValuesBlocked_MPIBAIJ 346fa18ffdSBarry Smith #define MatSetValues_MPIBAIJ_HT_MatScalar MatSetValues_MPIBAIJ_HT 356fa18ffdSBarry Smith #define MatSetValuesBlocked_MPIBAIJ_HT_MatScalar MatSetValuesBlocked_MPIBAIJ_HT 3693fea6afSBarry Smith #endif 373b2fbd54SBarry Smith 384a2ae208SSatish Balay #undef __FUNCT__ 394a2ae208SSatish Balay #define __FUNCT__ "MatGetRowMax_MPIBAIJ" 407843d17aSBarry Smith int MatGetRowMax_MPIBAIJ(Mat A,Vec v) 417843d17aSBarry Smith { 427843d17aSBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 437843d17aSBarry Smith int ierr,i; 4487828ca2SBarry Smith PetscScalar *va,*vb; 457843d17aSBarry Smith Vec vtmp; 467843d17aSBarry Smith 477843d17aSBarry Smith PetscFunctionBegin; 487843d17aSBarry Smith 497843d17aSBarry Smith ierr = MatGetRowMax(a->A,v);CHKERRQ(ierr); 50b1d4fb26SBarry Smith ierr = VecGetArrayFast(v,&va);CHKERRQ(ierr); 517843d17aSBarry Smith 52ac355199SBarry Smith ierr = VecCreateSeq(PETSC_COMM_SELF,A->m,&vtmp);CHKERRQ(ierr); 537843d17aSBarry Smith ierr = MatGetRowMax(a->B,vtmp);CHKERRQ(ierr); 54b1d4fb26SBarry Smith ierr = VecGetArrayFast(vtmp,&vb);CHKERRQ(ierr); 557843d17aSBarry Smith 56273d9f13SBarry Smith for (i=0; i<A->m; i++){ 57273d9f13SBarry Smith if (PetscAbsScalar(va[i]) < PetscAbsScalar(vb[i])) va[i] = vb[i]; 587843d17aSBarry Smith } 597843d17aSBarry Smith 60b1d4fb26SBarry Smith ierr = VecRestoreArrayFast(v,&va);CHKERRQ(ierr); 61b1d4fb26SBarry Smith ierr = VecRestoreArrayFast(vtmp,&vb);CHKERRQ(ierr); 62ac355199SBarry Smith ierr = VecDestroy(vtmp);CHKERRQ(ierr); 637843d17aSBarry Smith 647843d17aSBarry Smith PetscFunctionReturn(0); 657843d17aSBarry Smith } 667843d17aSBarry Smith 677fc3c18eSBarry Smith EXTERN_C_BEGIN 684a2ae208SSatish Balay #undef __FUNCT__ 694a2ae208SSatish Balay #define __FUNCT__ "MatStoreValues_MPIBAIJ" 707fc3c18eSBarry Smith int MatStoreValues_MPIBAIJ(Mat mat) 717fc3c18eSBarry Smith { 727fc3c18eSBarry Smith Mat_MPIBAIJ *aij = (Mat_MPIBAIJ *)mat->data; 737fc3c18eSBarry Smith int ierr; 747fc3c18eSBarry Smith 757fc3c18eSBarry Smith PetscFunctionBegin; 767fc3c18eSBarry Smith ierr = MatStoreValues(aij->A);CHKERRQ(ierr); 777fc3c18eSBarry Smith ierr = MatStoreValues(aij->B);CHKERRQ(ierr); 787fc3c18eSBarry Smith PetscFunctionReturn(0); 797fc3c18eSBarry Smith } 807fc3c18eSBarry Smith EXTERN_C_END 817fc3c18eSBarry Smith 827fc3c18eSBarry Smith EXTERN_C_BEGIN 834a2ae208SSatish Balay #undef __FUNCT__ 844a2ae208SSatish Balay #define __FUNCT__ "MatRetrieveValues_MPIBAIJ" 857fc3c18eSBarry Smith int MatRetrieveValues_MPIBAIJ(Mat mat) 867fc3c18eSBarry Smith { 877fc3c18eSBarry Smith Mat_MPIBAIJ *aij = (Mat_MPIBAIJ *)mat->data; 887fc3c18eSBarry Smith int ierr; 897fc3c18eSBarry Smith 907fc3c18eSBarry Smith PetscFunctionBegin; 917fc3c18eSBarry Smith ierr = MatRetrieveValues(aij->A);CHKERRQ(ierr); 927fc3c18eSBarry Smith ierr = MatRetrieveValues(aij->B);CHKERRQ(ierr); 937fc3c18eSBarry Smith PetscFunctionReturn(0); 947fc3c18eSBarry Smith } 957fc3c18eSBarry Smith EXTERN_C_END 967fc3c18eSBarry Smith 97537820f0SBarry Smith /* 98537820f0SBarry Smith Local utility routine that creates a mapping from the global column 9957b952d6SSatish Balay number to the local number in the off-diagonal part of the local 10057b952d6SSatish Balay storage of the matrix. This is done in a non scable way since the 10157b952d6SSatish Balay length of colmap equals the global matrix length. 10257b952d6SSatish Balay */ 1034a2ae208SSatish Balay #undef __FUNCT__ 1044a2ae208SSatish Balay #define __FUNCT__ "CreateColmap_MPIBAIJ_Private" 105653e4784SBarry Smith int CreateColmap_MPIBAIJ_Private(Mat mat) 10657b952d6SSatish Balay { 10757b952d6SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 10857b952d6SSatish Balay Mat_SeqBAIJ *B = (Mat_SeqBAIJ*)baij->B->data; 109dc2900e9SSatish Balay int nbs = B->nbs,i,bs=B->bs,ierr; 11057b952d6SSatish Balay 111d64ed03dSBarry Smith PetscFunctionBegin; 112aa482453SBarry Smith #if defined (PETSC_USE_CTABLE) 113f14a1c24SBarry Smith ierr = PetscTableCreate(baij->nbs,&baij->colmap);CHKERRQ(ierr); 11448e59246SSatish Balay for (i=0; i<nbs; i++){ 1150f5bd95cSBarry Smith ierr = PetscTableAdd(baij->colmap,baij->garray[i]+1,i*bs+1);CHKERRQ(ierr); 11648e59246SSatish Balay } 11748e59246SSatish Balay #else 11882502324SSatish Balay ierr = PetscMalloc((baij->Nbs+1)*sizeof(int),&baij->colmap);CHKERRQ(ierr); 119b0a32e0cSBarry Smith PetscLogObjectMemory(mat,baij->Nbs*sizeof(int)); 120549d3d68SSatish Balay ierr = PetscMemzero(baij->colmap,baij->Nbs*sizeof(int));CHKERRQ(ierr); 121928fc39bSSatish Balay for (i=0; i<nbs; i++) baij->colmap[baij->garray[i]] = i*bs+1; 12248e59246SSatish Balay #endif 1233a40ed3dSBarry Smith PetscFunctionReturn(0); 12457b952d6SSatish Balay } 12557b952d6SSatish Balay 12680c1aa95SSatish Balay #define CHUNKSIZE 10 12780c1aa95SSatish Balay 128f5e9677aSSatish Balay #define MatSetValues_SeqBAIJ_A_Private(row,col,value,addv) \ 12980c1aa95SSatish Balay { \ 13080c1aa95SSatish Balay \ 13180c1aa95SSatish Balay brow = row/bs; \ 13280c1aa95SSatish Balay rp = aj + ai[brow]; ap = aa + bs2*ai[brow]; \ 133ac7a638eSSatish Balay rmax = aimax[brow]; nrow = ailen[brow]; \ 13480c1aa95SSatish Balay bcol = col/bs; \ 13580c1aa95SSatish Balay ridx = row % bs; cidx = col % bs; \ 136ab26458aSBarry Smith low = 0; high = nrow; \ 137ab26458aSBarry Smith while (high-low > 3) { \ 138ab26458aSBarry Smith t = (low+high)/2; \ 139ab26458aSBarry Smith if (rp[t] > bcol) high = t; \ 140ab26458aSBarry Smith else low = t; \ 141ab26458aSBarry Smith } \ 142ab26458aSBarry Smith for (_i=low; _i<high; _i++) { \ 14380c1aa95SSatish Balay if (rp[_i] > bcol) break; \ 14480c1aa95SSatish Balay if (rp[_i] == bcol) { \ 14580c1aa95SSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 146eada6651SSatish Balay if (addv == ADD_VALUES) *bap += value; \ 147eada6651SSatish Balay else *bap = value; \ 148ac7a638eSSatish Balay goto a_noinsert; \ 14980c1aa95SSatish Balay } \ 15080c1aa95SSatish Balay } \ 15189280ab3SLois Curfman McInnes if (a->nonew == 1) goto a_noinsert; \ 152a45adfd6SMatthew Knepley else if (a->nonew == -1) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%d, %d) into matrix", row, col); \ 15380c1aa95SSatish Balay if (nrow >= rmax) { \ 15480c1aa95SSatish Balay /* there is no extra room in row, therefore enlarge */ \ 15580c1aa95SSatish Balay int new_nz = ai[a->mbs] + CHUNKSIZE,len,*new_i,*new_j; \ 1563eda8832SBarry Smith MatScalar *new_a; \ 15780c1aa95SSatish Balay \ 158a45adfd6SMatthew Knepley if (a->nonew == -2) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%d, %d) in the matrix", row, col); \ 15989280ab3SLois Curfman McInnes \ 16080c1aa95SSatish Balay /* malloc new storage space */ \ 1613eda8832SBarry Smith len = new_nz*(sizeof(int)+bs2*sizeof(MatScalar))+(a->mbs+1)*sizeof(int); \ 16282502324SSatish Balay ierr = PetscMalloc(len,&new_a);CHKERRQ(ierr); \ 16380c1aa95SSatish Balay new_j = (int*)(new_a + bs2*new_nz); \ 16480c1aa95SSatish Balay new_i = new_j + new_nz; \ 16580c1aa95SSatish Balay \ 16680c1aa95SSatish Balay /* copy over old data into new slots */ \ 16780c1aa95SSatish Balay for (ii=0; ii<brow+1; ii++) {new_i[ii] = ai[ii];} \ 16880c1aa95SSatish Balay for (ii=brow+1; ii<a->mbs+1; ii++) {new_i[ii] = ai[ii]+CHUNKSIZE;} \ 169549d3d68SSatish Balay ierr = PetscMemcpy(new_j,aj,(ai[brow]+nrow)*sizeof(int));CHKERRQ(ierr); \ 17080c1aa95SSatish Balay len = (new_nz - CHUNKSIZE - ai[brow] - nrow); \ 1713eda8832SBarry Smith ierr = PetscMemcpy(new_j+ai[brow]+nrow+CHUNKSIZE,aj+ai[brow]+nrow,len*sizeof(int));CHKERRQ(ierr); \ 1723eda8832SBarry Smith ierr = PetscMemcpy(new_a,aa,(ai[brow]+nrow)*bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 17387828ca2SBarry Smith ierr = PetscMemzero(new_a+bs2*(ai[brow]+nrow),bs2*CHUNKSIZE*sizeof(PetscScalar));CHKERRQ(ierr); \ 174549d3d68SSatish Balay ierr = PetscMemcpy(new_a+bs2*(ai[brow]+nrow+CHUNKSIZE), \ 1753eda8832SBarry Smith aa+bs2*(ai[brow]+nrow),bs2*len*sizeof(MatScalar));CHKERRQ(ierr); \ 17680c1aa95SSatish Balay /* free up old matrix storage */ \ 177606d414cSSatish Balay ierr = PetscFree(a->a);CHKERRQ(ierr); \ 178606d414cSSatish Balay if (!a->singlemalloc) { \ 179606d414cSSatish Balay ierr = PetscFree(a->i);CHKERRQ(ierr); \ 180606d414cSSatish Balay ierr = PetscFree(a->j);CHKERRQ(ierr);\ 181606d414cSSatish Balay } \ 18280c1aa95SSatish Balay aa = a->a = new_a; ai = a->i = new_i; aj = a->j = new_j; \ 1837c922b88SBarry Smith a->singlemalloc = PETSC_TRUE; \ 18480c1aa95SSatish Balay \ 18580c1aa95SSatish Balay rp = aj + ai[brow]; ap = aa + bs2*ai[brow]; \ 186ac7a638eSSatish Balay rmax = aimax[brow] = aimax[brow] + CHUNKSIZE; \ 187b0a32e0cSBarry Smith PetscLogObjectMemory(A,CHUNKSIZE*(sizeof(int) + bs2*sizeof(MatScalar))); \ 18880c1aa95SSatish Balay a->maxnz += bs2*CHUNKSIZE; \ 18980c1aa95SSatish Balay a->reallocs++; \ 19080c1aa95SSatish Balay a->nz++; \ 19180c1aa95SSatish Balay } \ 19280c1aa95SSatish Balay N = nrow++ - 1; \ 19380c1aa95SSatish Balay /* shift up all the later entries in this row */ \ 19480c1aa95SSatish Balay for (ii=N; ii>=_i; ii--) { \ 19580c1aa95SSatish Balay rp[ii+1] = rp[ii]; \ 1963eda8832SBarry Smith ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 19780c1aa95SSatish Balay } \ 1983eda8832SBarry Smith if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr); } \ 19980c1aa95SSatish Balay rp[_i] = bcol; \ 20080c1aa95SSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 201ac7a638eSSatish Balay a_noinsert:; \ 20280c1aa95SSatish Balay ailen[brow] = nrow; \ 20380c1aa95SSatish Balay } 20457b952d6SSatish Balay 205ac7a638eSSatish Balay #define MatSetValues_SeqBAIJ_B_Private(row,col,value,addv) \ 206ac7a638eSSatish Balay { \ 207ac7a638eSSatish Balay brow = row/bs; \ 208ac7a638eSSatish Balay rp = bj + bi[brow]; ap = ba + bs2*bi[brow]; \ 209ac7a638eSSatish Balay rmax = bimax[brow]; nrow = bilen[brow]; \ 210ac7a638eSSatish Balay bcol = col/bs; \ 211ac7a638eSSatish Balay ridx = row % bs; cidx = col % bs; \ 212ac7a638eSSatish Balay low = 0; high = nrow; \ 213ac7a638eSSatish Balay while (high-low > 3) { \ 214ac7a638eSSatish Balay t = (low+high)/2; \ 215ac7a638eSSatish Balay if (rp[t] > bcol) high = t; \ 216ac7a638eSSatish Balay else low = t; \ 217ac7a638eSSatish Balay } \ 218ac7a638eSSatish Balay for (_i=low; _i<high; _i++) { \ 219ac7a638eSSatish Balay if (rp[_i] > bcol) break; \ 220ac7a638eSSatish Balay if (rp[_i] == bcol) { \ 221ac7a638eSSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 222ac7a638eSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 223ac7a638eSSatish Balay else *bap = value; \ 224ac7a638eSSatish Balay goto b_noinsert; \ 225ac7a638eSSatish Balay } \ 226ac7a638eSSatish Balay } \ 22789280ab3SLois Curfman McInnes if (b->nonew == 1) goto b_noinsert; \ 228a45adfd6SMatthew Knepley else if (b->nonew == -1) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%d, %d) into matrix", row, col); \ 229ac7a638eSSatish Balay if (nrow >= rmax) { \ 230ac7a638eSSatish Balay /* there is no extra room in row, therefore enlarge */ \ 23174c639caSSatish Balay int new_nz = bi[b->mbs] + CHUNKSIZE,len,*new_i,*new_j; \ 2323eda8832SBarry Smith MatScalar *new_a; \ 233ac7a638eSSatish Balay \ 234a45adfd6SMatthew Knepley if (b->nonew == -2) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%d, %d) in the matrix", row, col); \ 23589280ab3SLois Curfman McInnes \ 236ac7a638eSSatish Balay /* malloc new storage space */ \ 2373eda8832SBarry Smith len = new_nz*(sizeof(int)+bs2*sizeof(MatScalar))+(b->mbs+1)*sizeof(int); \ 23882502324SSatish Balay ierr = PetscMalloc(len,&new_a);CHKERRQ(ierr); \ 239ac7a638eSSatish Balay new_j = (int*)(new_a + bs2*new_nz); \ 240ac7a638eSSatish Balay new_i = new_j + new_nz; \ 241ac7a638eSSatish Balay \ 242ac7a638eSSatish Balay /* copy over old data into new slots */ \ 243ac7a638eSSatish Balay for (ii=0; ii<brow+1; ii++) {new_i[ii] = bi[ii];} \ 24474c639caSSatish Balay for (ii=brow+1; ii<b->mbs+1; ii++) {new_i[ii] = bi[ii]+CHUNKSIZE;} \ 245549d3d68SSatish Balay ierr = PetscMemcpy(new_j,bj,(bi[brow]+nrow)*sizeof(int));CHKERRQ(ierr); \ 246ac7a638eSSatish Balay len = (new_nz - CHUNKSIZE - bi[brow] - nrow); \ 2473eda8832SBarry Smith ierr = PetscMemcpy(new_j+bi[brow]+nrow+CHUNKSIZE,bj+bi[brow]+nrow,len*sizeof(int));CHKERRQ(ierr); \ 2483eda8832SBarry Smith ierr = PetscMemcpy(new_a,ba,(bi[brow]+nrow)*bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 2493eda8832SBarry Smith ierr = PetscMemzero(new_a+bs2*(bi[brow]+nrow),bs2*CHUNKSIZE*sizeof(MatScalar));CHKERRQ(ierr); \ 250549d3d68SSatish Balay ierr = PetscMemcpy(new_a+bs2*(bi[brow]+nrow+CHUNKSIZE), \ 2513eda8832SBarry Smith ba+bs2*(bi[brow]+nrow),bs2*len*sizeof(MatScalar));CHKERRQ(ierr); \ 252ac7a638eSSatish Balay /* free up old matrix storage */ \ 253606d414cSSatish Balay ierr = PetscFree(b->a);CHKERRQ(ierr); \ 254606d414cSSatish Balay if (!b->singlemalloc) { \ 255606d414cSSatish Balay ierr = PetscFree(b->i);CHKERRQ(ierr); \ 256606d414cSSatish Balay ierr = PetscFree(b->j);CHKERRQ(ierr); \ 257606d414cSSatish Balay } \ 25874c639caSSatish Balay ba = b->a = new_a; bi = b->i = new_i; bj = b->j = new_j; \ 2597c922b88SBarry Smith b->singlemalloc = PETSC_TRUE; \ 260ac7a638eSSatish Balay \ 261ac7a638eSSatish Balay rp = bj + bi[brow]; ap = ba + bs2*bi[brow]; \ 262ac7a638eSSatish Balay rmax = bimax[brow] = bimax[brow] + CHUNKSIZE; \ 263b0a32e0cSBarry Smith PetscLogObjectMemory(B,CHUNKSIZE*(sizeof(int) + bs2*sizeof(MatScalar))); \ 26474c639caSSatish Balay b->maxnz += bs2*CHUNKSIZE; \ 26574c639caSSatish Balay b->reallocs++; \ 26674c639caSSatish Balay b->nz++; \ 267ac7a638eSSatish Balay } \ 268ac7a638eSSatish Balay N = nrow++ - 1; \ 269ac7a638eSSatish Balay /* shift up all the later entries in this row */ \ 270ac7a638eSSatish Balay for (ii=N; ii>=_i; ii--) { \ 271ac7a638eSSatish Balay rp[ii+1] = rp[ii]; \ 2723eda8832SBarry Smith ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 273ac7a638eSSatish Balay } \ 2743eda8832SBarry Smith if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr);} \ 275ac7a638eSSatish Balay rp[_i] = bcol; \ 276ac7a638eSSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 277ac7a638eSSatish Balay b_noinsert:; \ 278ac7a638eSSatish Balay bilen[brow] = nrow; \ 279ac7a638eSSatish Balay } 280ac7a638eSSatish Balay 28193fea6afSBarry Smith #if defined(PETSC_USE_MAT_SINGLE) 2824a2ae208SSatish Balay #undef __FUNCT__ 2834a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_MPIBAIJ" 284f15d580aSBarry Smith int MatSetValues_MPIBAIJ(Mat mat,int m,const int im[],int n,const int in[],const PetscScalar v[],InsertMode addv) 28557b952d6SSatish Balay { 2866fa18ffdSBarry Smith Mat_MPIBAIJ *b = (Mat_MPIBAIJ*)mat->data; 28793fea6afSBarry Smith int ierr,i,N = m*n; 2886fa18ffdSBarry Smith MatScalar *vsingle; 28993fea6afSBarry Smith 29093fea6afSBarry Smith PetscFunctionBegin; 2916fa18ffdSBarry Smith if (N > b->setvalueslen) { 2926fa18ffdSBarry Smith if (b->setvaluescopy) {ierr = PetscFree(b->setvaluescopy);CHKERRQ(ierr);} 29382502324SSatish Balay ierr = PetscMalloc(N*sizeof(MatScalar),&b->setvaluescopy);CHKERRQ(ierr); 2946fa18ffdSBarry Smith b->setvalueslen = N; 2956fa18ffdSBarry Smith } 2966fa18ffdSBarry Smith vsingle = b->setvaluescopy; 2976fa18ffdSBarry Smith 29893fea6afSBarry Smith for (i=0; i<N; i++) { 29993fea6afSBarry Smith vsingle[i] = v[i]; 30093fea6afSBarry Smith } 30193fea6afSBarry Smith ierr = MatSetValues_MPIBAIJ_MatScalar(mat,m,im,n,in,vsingle,addv);CHKERRQ(ierr); 30293fea6afSBarry Smith PetscFunctionReturn(0); 30393fea6afSBarry Smith } 30493fea6afSBarry Smith 3054a2ae208SSatish Balay #undef __FUNCT__ 3064a2ae208SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_MPIBAIJ" 307f15d580aSBarry Smith int MatSetValuesBlocked_MPIBAIJ(Mat mat,int m,const int im[],int n,const int in[],const PetscScalar v[],InsertMode addv) 30893fea6afSBarry Smith { 3096fa18ffdSBarry Smith Mat_MPIBAIJ *b = (Mat_MPIBAIJ*)mat->data; 3106fa18ffdSBarry Smith int ierr,i,N = m*n*b->bs2; 3116fa18ffdSBarry Smith MatScalar *vsingle; 31293fea6afSBarry Smith 31393fea6afSBarry Smith PetscFunctionBegin; 3146fa18ffdSBarry Smith if (N > b->setvalueslen) { 3156fa18ffdSBarry Smith if (b->setvaluescopy) {ierr = PetscFree(b->setvaluescopy);CHKERRQ(ierr);} 31682502324SSatish Balay ierr = PetscMalloc(N*sizeof(MatScalar),&b->setvaluescopy);CHKERRQ(ierr); 3176fa18ffdSBarry Smith b->setvalueslen = N; 3186fa18ffdSBarry Smith } 3196fa18ffdSBarry Smith vsingle = b->setvaluescopy; 32093fea6afSBarry Smith for (i=0; i<N; i++) { 32193fea6afSBarry Smith vsingle[i] = v[i]; 32293fea6afSBarry Smith } 32393fea6afSBarry Smith ierr = MatSetValuesBlocked_MPIBAIJ_MatScalar(mat,m,im,n,in,vsingle,addv);CHKERRQ(ierr); 32493fea6afSBarry Smith PetscFunctionReturn(0); 32593fea6afSBarry Smith } 3266fa18ffdSBarry Smith 3274a2ae208SSatish Balay #undef __FUNCT__ 3284a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_MPIBAIJ_HT" 329f15d580aSBarry Smith int MatSetValues_MPIBAIJ_HT(Mat mat,int m,const int im[],int n,const int in[],const PetscScalar v[],InsertMode addv) 3306fa18ffdSBarry Smith { 3316fa18ffdSBarry Smith Mat_MPIBAIJ *b = (Mat_MPIBAIJ*)mat->data; 3326fa18ffdSBarry Smith int ierr,i,N = m*n; 3336fa18ffdSBarry Smith MatScalar *vsingle; 3346fa18ffdSBarry Smith 3356fa18ffdSBarry Smith PetscFunctionBegin; 3366fa18ffdSBarry Smith if (N > b->setvalueslen) { 3376fa18ffdSBarry Smith if (b->setvaluescopy) {ierr = PetscFree(b->setvaluescopy);CHKERRQ(ierr);} 33882502324SSatish Balay ierr = PetscMalloc(N*sizeof(MatScalar),&b->setvaluescopy);CHKERRQ(ierr); 3396fa18ffdSBarry Smith b->setvalueslen = N; 3406fa18ffdSBarry Smith } 3416fa18ffdSBarry Smith vsingle = b->setvaluescopy; 3426fa18ffdSBarry Smith for (i=0; i<N; i++) { 3436fa18ffdSBarry Smith vsingle[i] = v[i]; 3446fa18ffdSBarry Smith } 3456fa18ffdSBarry Smith ierr = MatSetValues_MPIBAIJ_HT_MatScalar(mat,m,im,n,in,vsingle,addv);CHKERRQ(ierr); 3466fa18ffdSBarry Smith PetscFunctionReturn(0); 3476fa18ffdSBarry Smith } 3486fa18ffdSBarry Smith 3494a2ae208SSatish Balay #undef __FUNCT__ 3504a2ae208SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_MPIBAIJ_HT" 351f15d580aSBarry Smith int MatSetValuesBlocked_MPIBAIJ_HT(Mat mat,int m,const int im[],int n,const int in[],const PetscScalar v[],InsertMode addv) 3526fa18ffdSBarry Smith { 3536fa18ffdSBarry Smith Mat_MPIBAIJ *b = (Mat_MPIBAIJ*)mat->data; 3546fa18ffdSBarry Smith int ierr,i,N = m*n*b->bs2; 3556fa18ffdSBarry Smith MatScalar *vsingle; 3566fa18ffdSBarry Smith 3576fa18ffdSBarry Smith PetscFunctionBegin; 3586fa18ffdSBarry Smith if (N > b->setvalueslen) { 3596fa18ffdSBarry Smith if (b->setvaluescopy) {ierr = PetscFree(b->setvaluescopy);CHKERRQ(ierr);} 36082502324SSatish Balay ierr = PetscMalloc(N*sizeof(MatScalar),&b->setvaluescopy);CHKERRQ(ierr); 3616fa18ffdSBarry Smith b->setvalueslen = N; 3626fa18ffdSBarry Smith } 3636fa18ffdSBarry Smith vsingle = b->setvaluescopy; 3646fa18ffdSBarry Smith for (i=0; i<N; i++) { 3656fa18ffdSBarry Smith vsingle[i] = v[i]; 3666fa18ffdSBarry Smith } 3676fa18ffdSBarry Smith ierr = MatSetValuesBlocked_MPIBAIJ_HT_MatScalar(mat,m,im,n,in,vsingle,addv);CHKERRQ(ierr); 3686fa18ffdSBarry Smith PetscFunctionReturn(0); 3696fa18ffdSBarry Smith } 37093fea6afSBarry Smith #endif 37193fea6afSBarry Smith 3724a2ae208SSatish Balay #undef __FUNCT__ 373e03e44c9SSatish Balay #define __FUNCT__ "MatSetValues_MPIBAIJ_MatScalar" 374f15d580aSBarry Smith int MatSetValues_MPIBAIJ_MatScalar(Mat mat,int m,const int im[],int n,const int in[],const MatScalar v[],InsertMode addv) 37593fea6afSBarry Smith { 37657b952d6SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 37793fea6afSBarry Smith MatScalar value; 378273d9f13SBarry Smith PetscTruth roworiented = baij->roworiented; 3794fa0d573SSatish Balay int ierr,i,j,row,col; 380273d9f13SBarry Smith int rstart_orig=baij->rstart_bs; 3814fa0d573SSatish Balay int rend_orig=baij->rend_bs,cstart_orig=baij->cstart_bs; 3824fa0d573SSatish Balay int cend_orig=baij->cend_bs,bs=baij->bs; 38357b952d6SSatish Balay 384eada6651SSatish Balay /* Some Variables required in the macro */ 38580c1aa95SSatish Balay Mat A = baij->A; 38680c1aa95SSatish Balay Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)(A)->data; 387ac7a638eSSatish Balay int *aimax=a->imax,*ai=a->i,*ailen=a->ilen,*aj=a->j; 3883eda8832SBarry Smith MatScalar *aa=a->a; 389ac7a638eSSatish Balay 390ac7a638eSSatish Balay Mat B = baij->B; 391ac7a638eSSatish Balay Mat_SeqBAIJ *b = (Mat_SeqBAIJ*)(B)->data; 392ac7a638eSSatish Balay int *bimax=b->imax,*bi=b->i,*bilen=b->ilen,*bj=b->j; 3933eda8832SBarry Smith MatScalar *ba=b->a; 394ac7a638eSSatish Balay 395ac7a638eSSatish Balay int *rp,ii,nrow,_i,rmax,N,brow,bcol; 396ab26458aSBarry Smith int low,high,t,ridx,cidx,bs2=a->bs2; 3973eda8832SBarry Smith MatScalar *ap,*bap; 39880c1aa95SSatish Balay 399d64ed03dSBarry Smith PetscFunctionBegin; 40057b952d6SSatish Balay for (i=0; i<m; i++) { 4015ef9f2a5SBarry Smith if (im[i] < 0) continue; 402aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g) 403590ac198SBarry Smith if (im[i] >= mat->M) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %d max %d",im[i],mat->M-1); 404639f9d9dSBarry Smith #endif 40557b952d6SSatish Balay if (im[i] >= rstart_orig && im[i] < rend_orig) { 40657b952d6SSatish Balay row = im[i] - rstart_orig; 40757b952d6SSatish Balay for (j=0; j<n; j++) { 40857b952d6SSatish Balay if (in[j] >= cstart_orig && in[j] < cend_orig){ 40957b952d6SSatish Balay col = in[j] - cstart_orig; 41057b952d6SSatish Balay if (roworiented) value = v[i*n+j]; else value = v[i+j*m]; 411f5e9677aSSatish Balay MatSetValues_SeqBAIJ_A_Private(row,col,value,addv); 41280c1aa95SSatish Balay /* ierr = MatSetValues_SeqBAIJ(baij->A,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 41373959e64SBarry Smith } else if (in[j] < 0) continue; 414aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g) 415590ac198SBarry Smith else if (in[j] >= mat->N) {SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %d max %d",in[i],mat->N-1);} 416639f9d9dSBarry Smith #endif 41757b952d6SSatish Balay else { 41857b952d6SSatish Balay if (mat->was_assembled) { 419905e6a2fSBarry Smith if (!baij->colmap) { 420905e6a2fSBarry Smith ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 421905e6a2fSBarry Smith } 422aa482453SBarry Smith #if defined (PETSC_USE_CTABLE) 4230f5bd95cSBarry Smith ierr = PetscTableFind(baij->colmap,in[j]/bs + 1,&col);CHKERRQ(ierr); 424bba1ac68SSatish Balay col = col - 1; 42548e59246SSatish Balay #else 426bba1ac68SSatish Balay col = baij->colmap[in[j]/bs] - 1; 42748e59246SSatish Balay #endif 42857b952d6SSatish Balay if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) { 42957b952d6SSatish Balay ierr = DisAssemble_MPIBAIJ(mat);CHKERRQ(ierr); 4308295de27SSatish Balay col = in[j]; 4319bf004c3SSatish Balay /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */ 4329bf004c3SSatish Balay B = baij->B; 4339bf004c3SSatish Balay b = (Mat_SeqBAIJ*)(B)->data; 4349bf004c3SSatish Balay bimax=b->imax;bi=b->i;bilen=b->ilen;bj=b->j; 4359bf004c3SSatish Balay ba=b->a; 436bba1ac68SSatish Balay } else col += in[j]%bs; 4378295de27SSatish Balay } else col = in[j]; 43857b952d6SSatish Balay if (roworiented) value = v[i*n+j]; else value = v[i+j*m]; 43990da58bdSSatish Balay MatSetValues_SeqBAIJ_B_Private(row,col,value,addv); 44090da58bdSSatish Balay /* ierr = MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 44157b952d6SSatish Balay } 44257b952d6SSatish Balay } 443d64ed03dSBarry Smith } else { 44490f02eecSBarry Smith if (!baij->donotstash) { 445ff2fd236SBarry Smith if (roworiented) { 4466fa18ffdSBarry Smith ierr = MatStashValuesRow_Private(&mat->stash,im[i],n,in,v+i*n);CHKERRQ(ierr); 447ff2fd236SBarry Smith } else { 4486fa18ffdSBarry Smith ierr = MatStashValuesCol_Private(&mat->stash,im[i],n,in,v+i,m);CHKERRQ(ierr); 44957b952d6SSatish Balay } 45057b952d6SSatish Balay } 45157b952d6SSatish Balay } 45290f02eecSBarry Smith } 4533a40ed3dSBarry Smith PetscFunctionReturn(0); 45457b952d6SSatish Balay } 45557b952d6SSatish Balay 4564a2ae208SSatish Balay #undef __FUNCT__ 4574a2ae208SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_MPIBAIJ_MatScalar" 458f15d580aSBarry Smith int MatSetValuesBlocked_MPIBAIJ_MatScalar(Mat mat,int m,const int im[],int n,const int in[],const MatScalar v[],InsertMode addv) 459ab26458aSBarry Smith { 460ab26458aSBarry Smith Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 461f15d580aSBarry Smith const MatScalar *value; 462f15d580aSBarry Smith MatScalar *barray=baij->barray; 463273d9f13SBarry Smith PetscTruth roworiented = baij->roworiented; 464273d9f13SBarry Smith int ierr,i,j,ii,jj,row,col,rstart=baij->rstart; 465ab26458aSBarry Smith int rend=baij->rend,cstart=baij->cstart,stepval; 466ab26458aSBarry Smith int cend=baij->cend,bs=baij->bs,bs2=baij->bs2; 467ab26458aSBarry Smith 468b16ae2b1SBarry Smith PetscFunctionBegin; 46930793edcSSatish Balay if(!barray) { 47082502324SSatish Balay ierr = PetscMalloc(bs2*sizeof(MatScalar),&barray);CHKERRQ(ierr); 47182502324SSatish Balay baij->barray = barray; 47230793edcSSatish Balay } 47330793edcSSatish Balay 474ab26458aSBarry Smith if (roworiented) { 475ab26458aSBarry Smith stepval = (n-1)*bs; 476ab26458aSBarry Smith } else { 477ab26458aSBarry Smith stepval = (m-1)*bs; 478ab26458aSBarry Smith } 479ab26458aSBarry Smith for (i=0; i<m; i++) { 4805ef9f2a5SBarry Smith if (im[i] < 0) continue; 481aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g) 482590ac198SBarry Smith if (im[i] >= baij->Mbs) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large, row %d max %d",im[i],baij->Mbs-1); 483ab26458aSBarry Smith #endif 484ab26458aSBarry Smith if (im[i] >= rstart && im[i] < rend) { 485ab26458aSBarry Smith row = im[i] - rstart; 486ab26458aSBarry Smith for (j=0; j<n; j++) { 48715b57d14SSatish Balay /* If NumCol = 1 then a copy is not required */ 48815b57d14SSatish Balay if ((roworiented) && (n == 1)) { 489f15d580aSBarry Smith barray = (MatScalar*)v + i*bs2; 49015b57d14SSatish Balay } else if((!roworiented) && (m == 1)) { 491f15d580aSBarry Smith barray = (MatScalar*)v + j*bs2; 49215b57d14SSatish Balay } else { /* Here a copy is required */ 493ab26458aSBarry Smith if (roworiented) { 494ab26458aSBarry Smith value = v + i*(stepval+bs)*bs + j*bs; 495ab26458aSBarry Smith } else { 496ab26458aSBarry Smith value = v + j*(stepval+bs)*bs + i*bs; 497abef11f7SSatish Balay } 49847513183SBarry Smith for (ii=0; ii<bs; ii++,value+=stepval) { 49947513183SBarry Smith for (jj=0; jj<bs; jj++) { 50030793edcSSatish Balay *barray++ = *value++; 50147513183SBarry Smith } 50247513183SBarry Smith } 50330793edcSSatish Balay barray -=bs2; 50415b57d14SSatish Balay } 505abef11f7SSatish Balay 506abef11f7SSatish Balay if (in[j] >= cstart && in[j] < cend){ 507abef11f7SSatish Balay col = in[j] - cstart; 50893fea6afSBarry Smith ierr = MatSetValuesBlocked_SeqBAIJ_MatScalar(baij->A,1,&row,1,&col,barray,addv);CHKERRQ(ierr); 509ab26458aSBarry Smith } 5105ef9f2a5SBarry Smith else if (in[j] < 0) continue; 511aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g) 512590ac198SBarry Smith else if (in[j] >= baij->Nbs) {SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large, col %d max %d",in[j],baij->Nbs-1);} 513ab26458aSBarry Smith #endif 514ab26458aSBarry Smith else { 515ab26458aSBarry Smith if (mat->was_assembled) { 516ab26458aSBarry Smith if (!baij->colmap) { 517ab26458aSBarry Smith ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 518ab26458aSBarry Smith } 519a5eb4965SSatish Balay 520aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g) 521aa482453SBarry Smith #if defined (PETSC_USE_CTABLE) 522fa46199cSSatish Balay { int data; 5230f5bd95cSBarry Smith ierr = PetscTableFind(baij->colmap,in[j]+1,&data);CHKERRQ(ierr); 52429bbc08cSBarry Smith if ((data - 1) % bs) SETERRQ(PETSC_ERR_PLIB,"Incorrect colmap"); 525fa46199cSSatish Balay } 52648e59246SSatish Balay #else 52729bbc08cSBarry Smith if ((baij->colmap[in[j]] - 1) % bs) SETERRQ(PETSC_ERR_PLIB,"Incorrect colmap"); 528a5eb4965SSatish Balay #endif 52948e59246SSatish Balay #endif 530aa482453SBarry Smith #if defined (PETSC_USE_CTABLE) 5310f5bd95cSBarry Smith ierr = PetscTableFind(baij->colmap,in[j]+1,&col);CHKERRQ(ierr); 532fa46199cSSatish Balay col = (col - 1)/bs; 53348e59246SSatish Balay #else 534a5eb4965SSatish Balay col = (baij->colmap[in[j]] - 1)/bs; 53548e59246SSatish Balay #endif 536ab26458aSBarry Smith if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) { 537ab26458aSBarry Smith ierr = DisAssemble_MPIBAIJ(mat);CHKERRQ(ierr); 538ab26458aSBarry Smith col = in[j]; 539ab26458aSBarry Smith } 540ab26458aSBarry Smith } 541ab26458aSBarry Smith else col = in[j]; 54293fea6afSBarry Smith ierr = MatSetValuesBlocked_SeqBAIJ_MatScalar(baij->B,1,&row,1,&col,barray,addv);CHKERRQ(ierr); 543ab26458aSBarry Smith } 544ab26458aSBarry Smith } 545d64ed03dSBarry Smith } else { 546ab26458aSBarry Smith if (!baij->donotstash) { 547ff2fd236SBarry Smith if (roworiented) { 5486fa18ffdSBarry Smith ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 549ff2fd236SBarry Smith } else { 5506fa18ffdSBarry Smith ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 551ff2fd236SBarry Smith } 552abef11f7SSatish Balay } 553ab26458aSBarry Smith } 554ab26458aSBarry Smith } 5553a40ed3dSBarry Smith PetscFunctionReturn(0); 556ab26458aSBarry Smith } 5576fa18ffdSBarry Smith 5580bdbc534SSatish Balay #define HASH_KEY 0.6180339887 559c2760754SSatish Balay #define HASH(size,key,tmp) (tmp = (key)*HASH_KEY,(int)((size)*(tmp-(int)tmp))) 5606fa18ffdSBarry Smith /* #define HASH(size,key) ((int)((size)*fmod(((key)*HASH_KEY),1))) */ 561c2760754SSatish Balay /* #define HASH(size,key,tmp) ((int)((size)*fmod(((key)*HASH_KEY),1))) */ 5624a2ae208SSatish Balay #undef __FUNCT__ 5634a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_MPIBAIJ_HT_MatScalar" 564f15d580aSBarry Smith int MatSetValues_MPIBAIJ_HT_MatScalar(Mat mat,int m,const int im[],int n,const int in[],const MatScalar v[],InsertMode addv) 5650bdbc534SSatish Balay { 5660bdbc534SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 567273d9f13SBarry Smith PetscTruth roworiented = baij->roworiented; 5680bdbc534SSatish Balay int ierr,i,j,row,col; 569273d9f13SBarry Smith int rstart_orig=baij->rstart_bs; 570c2760754SSatish Balay int rend_orig=baij->rend_bs,Nbs=baij->Nbs; 571c2760754SSatish Balay int h1,key,size=baij->ht_size,bs=baij->bs,*HT=baij->ht,idx; 572329f5518SBarry Smith PetscReal tmp; 5733eda8832SBarry Smith MatScalar **HD = baij->hd,value; 574aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g) 5754a15367fSSatish Balay int total_ct=baij->ht_total_ct,insert_ct=baij->ht_insert_ct; 5764a15367fSSatish Balay #endif 5770bdbc534SSatish Balay 5780bdbc534SSatish Balay PetscFunctionBegin; 5790bdbc534SSatish Balay 5800bdbc534SSatish Balay for (i=0; i<m; i++) { 581aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g) 58229bbc08cSBarry Smith if (im[i] < 0) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Negative row"); 583590ac198SBarry Smith if (im[i] >= mat->M) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %d max %d",im[i],mat->M-1); 5840bdbc534SSatish Balay #endif 5850bdbc534SSatish Balay row = im[i]; 586c2760754SSatish Balay if (row >= rstart_orig && row < rend_orig) { 5870bdbc534SSatish Balay for (j=0; j<n; j++) { 5880bdbc534SSatish Balay col = in[j]; 5896fa18ffdSBarry Smith if (roworiented) value = v[i*n+j]; else value = v[i+j*m]; 5900bdbc534SSatish Balay /* Look up into the Hash Table */ 591c2760754SSatish Balay key = (row/bs)*Nbs+(col/bs)+1; 592c2760754SSatish Balay h1 = HASH(size,key,tmp); 5930bdbc534SSatish Balay 594c2760754SSatish Balay 595c2760754SSatish Balay idx = h1; 596aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g) 597187ce0cbSSatish Balay insert_ct++; 598187ce0cbSSatish Balay total_ct++; 599187ce0cbSSatish Balay if (HT[idx] != key) { 600187ce0cbSSatish Balay for (idx=h1; (idx<size) && (HT[idx]!=key); idx++,total_ct++); 601187ce0cbSSatish Balay if (idx == size) { 602187ce0cbSSatish Balay for (idx=0; (idx<h1) && (HT[idx]!=key); idx++,total_ct++); 603187ce0cbSSatish Balay if (idx == h1) { 604a45adfd6SMatthew Knepley SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"(%d,%d) has no entry in the hash table", row, col); 605187ce0cbSSatish Balay } 606187ce0cbSSatish Balay } 607187ce0cbSSatish Balay } 608187ce0cbSSatish Balay #else 609c2760754SSatish Balay if (HT[idx] != key) { 610c2760754SSatish Balay for (idx=h1; (idx<size) && (HT[idx]!=key); idx++); 611c2760754SSatish Balay if (idx == size) { 612c2760754SSatish Balay for (idx=0; (idx<h1) && (HT[idx]!=key); idx++); 613c2760754SSatish Balay if (idx == h1) { 614a45adfd6SMatthew Knepley SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"(%d,%d) has no entry in the hash table", row, col); 615c2760754SSatish Balay } 616c2760754SSatish Balay } 617c2760754SSatish Balay } 618187ce0cbSSatish Balay #endif 619c2760754SSatish Balay /* A HASH table entry is found, so insert the values at the correct address */ 620c2760754SSatish Balay if (addv == ADD_VALUES) *(HD[idx]+ (col % bs)*bs + (row % bs)) += value; 621c2760754SSatish Balay else *(HD[idx]+ (col % bs)*bs + (row % bs)) = value; 6220bdbc534SSatish Balay } 6230bdbc534SSatish Balay } else { 6240bdbc534SSatish Balay if (!baij->donotstash) { 625ff2fd236SBarry Smith if (roworiented) { 6268798bf22SSatish Balay ierr = MatStashValuesRow_Private(&mat->stash,im[i],n,in,v+i*n);CHKERRQ(ierr); 627ff2fd236SBarry Smith } else { 6288798bf22SSatish Balay ierr = MatStashValuesCol_Private(&mat->stash,im[i],n,in,v+i,m);CHKERRQ(ierr); 6290bdbc534SSatish Balay } 6300bdbc534SSatish Balay } 6310bdbc534SSatish Balay } 6320bdbc534SSatish Balay } 633aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g) 634187ce0cbSSatish Balay baij->ht_total_ct = total_ct; 635187ce0cbSSatish Balay baij->ht_insert_ct = insert_ct; 636187ce0cbSSatish Balay #endif 6370bdbc534SSatish Balay PetscFunctionReturn(0); 6380bdbc534SSatish Balay } 6390bdbc534SSatish Balay 6404a2ae208SSatish Balay #undef __FUNCT__ 6414a2ae208SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_MPIBAIJ_HT_MatScalar" 642f15d580aSBarry Smith int MatSetValuesBlocked_MPIBAIJ_HT_MatScalar(Mat mat,int m,const int im[],int n,const int in[],const MatScalar v[],InsertMode addv) 6430bdbc534SSatish Balay { 6440bdbc534SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 645273d9f13SBarry Smith PetscTruth roworiented = baij->roworiented; 6468798bf22SSatish Balay int ierr,i,j,ii,jj,row,col; 647273d9f13SBarry Smith int rstart=baij->rstart ; 648b4cc0f5aSSatish Balay int rend=baij->rend,stepval,bs=baij->bs,bs2=baij->bs2; 649c2760754SSatish Balay int h1,key,size=baij->ht_size,idx,*HT=baij->ht,Nbs=baij->Nbs; 650329f5518SBarry Smith PetscReal tmp; 6513eda8832SBarry Smith MatScalar **HD = baij->hd,*baij_a; 652f15d580aSBarry Smith const MatScalar *v_t,*value; 653aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g) 6544a15367fSSatish Balay int total_ct=baij->ht_total_ct,insert_ct=baij->ht_insert_ct; 6554a15367fSSatish Balay #endif 6560bdbc534SSatish Balay 657d0a41580SSatish Balay PetscFunctionBegin; 658d0a41580SSatish Balay 6590bdbc534SSatish Balay if (roworiented) { 6600bdbc534SSatish Balay stepval = (n-1)*bs; 6610bdbc534SSatish Balay } else { 6620bdbc534SSatish Balay stepval = (m-1)*bs; 6630bdbc534SSatish Balay } 6640bdbc534SSatish Balay for (i=0; i<m; i++) { 665aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g) 666590ac198SBarry Smith if (im[i] < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %d",im[i]); 667590ac198SBarry Smith if (im[i] >= baij->Mbs) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %d max %d",im[i],baij->Mbs-1); 6680bdbc534SSatish Balay #endif 6690bdbc534SSatish Balay row = im[i]; 670187ce0cbSSatish Balay v_t = v + i*bs2; 671c2760754SSatish Balay if (row >= rstart && row < rend) { 6720bdbc534SSatish Balay for (j=0; j<n; j++) { 6730bdbc534SSatish Balay col = in[j]; 6740bdbc534SSatish Balay 6750bdbc534SSatish Balay /* Look up into the Hash Table */ 676c2760754SSatish Balay key = row*Nbs+col+1; 677c2760754SSatish Balay h1 = HASH(size,key,tmp); 6780bdbc534SSatish Balay 679c2760754SSatish Balay idx = h1; 680aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g) 681187ce0cbSSatish Balay total_ct++; 682187ce0cbSSatish Balay insert_ct++; 683187ce0cbSSatish Balay if (HT[idx] != key) { 684187ce0cbSSatish Balay for (idx=h1; (idx<size) && (HT[idx]!=key); idx++,total_ct++); 685187ce0cbSSatish Balay if (idx == size) { 686187ce0cbSSatish Balay for (idx=0; (idx<h1) && (HT[idx]!=key); idx++,total_ct++); 687187ce0cbSSatish Balay if (idx == h1) { 688a45adfd6SMatthew Knepley SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"(%d,%d) has no entry in the hash table", row, col); 689187ce0cbSSatish Balay } 690187ce0cbSSatish Balay } 691187ce0cbSSatish Balay } 692187ce0cbSSatish Balay #else 693c2760754SSatish Balay if (HT[idx] != key) { 694c2760754SSatish Balay for (idx=h1; (idx<size) && (HT[idx]!=key); idx++); 695c2760754SSatish Balay if (idx == size) { 696c2760754SSatish Balay for (idx=0; (idx<h1) && (HT[idx]!=key); idx++); 697c2760754SSatish Balay if (idx == h1) { 698a45adfd6SMatthew Knepley SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"(%d,%d) has no entry in the hash table", row, col); 699c2760754SSatish Balay } 700c2760754SSatish Balay } 701c2760754SSatish Balay } 702187ce0cbSSatish Balay #endif 703c2760754SSatish Balay baij_a = HD[idx]; 7040bdbc534SSatish Balay if (roworiented) { 705c2760754SSatish Balay /*value = v + i*(stepval+bs)*bs + j*bs;*/ 706187ce0cbSSatish Balay /* value = v + (i*(stepval+bs)+j)*bs; */ 707187ce0cbSSatish Balay value = v_t; 708187ce0cbSSatish Balay v_t += bs; 709fef45726SSatish Balay if (addv == ADD_VALUES) { 710c2760754SSatish Balay for (ii=0; ii<bs; ii++,value+=stepval) { 711c2760754SSatish Balay for (jj=ii; jj<bs2; jj+=bs) { 712fef45726SSatish Balay baij_a[jj] += *value++; 713b4cc0f5aSSatish Balay } 714b4cc0f5aSSatish Balay } 715fef45726SSatish Balay } else { 716c2760754SSatish Balay for (ii=0; ii<bs; ii++,value+=stepval) { 717c2760754SSatish Balay for (jj=ii; jj<bs2; jj+=bs) { 718fef45726SSatish Balay baij_a[jj] = *value++; 719fef45726SSatish Balay } 720fef45726SSatish Balay } 721fef45726SSatish Balay } 7220bdbc534SSatish Balay } else { 7230bdbc534SSatish Balay value = v + j*(stepval+bs)*bs + i*bs; 724fef45726SSatish Balay if (addv == ADD_VALUES) { 725b4cc0f5aSSatish Balay for (ii=0; ii<bs; ii++,value+=stepval,baij_a+=bs) { 7260bdbc534SSatish Balay for (jj=0; jj<bs; jj++) { 727fef45726SSatish Balay baij_a[jj] += *value++; 728fef45726SSatish Balay } 729fef45726SSatish Balay } 730fef45726SSatish Balay } else { 731fef45726SSatish Balay for (ii=0; ii<bs; ii++,value+=stepval,baij_a+=bs) { 732fef45726SSatish Balay for (jj=0; jj<bs; jj++) { 733fef45726SSatish Balay baij_a[jj] = *value++; 734fef45726SSatish Balay } 735b4cc0f5aSSatish Balay } 7360bdbc534SSatish Balay } 7370bdbc534SSatish Balay } 7380bdbc534SSatish Balay } 7390bdbc534SSatish Balay } else { 7400bdbc534SSatish Balay if (!baij->donotstash) { 7410bdbc534SSatish Balay if (roworiented) { 7428798bf22SSatish Balay ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 7430bdbc534SSatish Balay } else { 7448798bf22SSatish Balay ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 7450bdbc534SSatish Balay } 7460bdbc534SSatish Balay } 7470bdbc534SSatish Balay } 7480bdbc534SSatish Balay } 749aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g) 750187ce0cbSSatish Balay baij->ht_total_ct = total_ct; 751187ce0cbSSatish Balay baij->ht_insert_ct = insert_ct; 752187ce0cbSSatish Balay #endif 7530bdbc534SSatish Balay PetscFunctionReturn(0); 7540bdbc534SSatish Balay } 755133cdb44SSatish Balay 7564a2ae208SSatish Balay #undef __FUNCT__ 7574a2ae208SSatish Balay #define __FUNCT__ "MatGetValues_MPIBAIJ" 758f15d580aSBarry Smith int MatGetValues_MPIBAIJ(Mat mat,int m,const int idxm[],int n,const int idxn[],PetscScalar v[]) 759d6de1c52SSatish Balay { 760d6de1c52SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 761d6de1c52SSatish Balay int bs=baij->bs,ierr,i,j,bsrstart = baij->rstart*bs,bsrend = baij->rend*bs; 76248e59246SSatish Balay int bscstart = baij->cstart*bs,bscend = baij->cend*bs,row,col,data; 763d6de1c52SSatish Balay 764133cdb44SSatish Balay PetscFunctionBegin; 765d6de1c52SSatish Balay for (i=0; i<m; i++) { 766590ac198SBarry Smith if (idxm[i] < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %d",idxm[i]); 767590ac198SBarry Smith if (idxm[i] >= mat->M) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %d max %d",idxm[i],mat->M-1); 768d6de1c52SSatish Balay if (idxm[i] >= bsrstart && idxm[i] < bsrend) { 769d6de1c52SSatish Balay row = idxm[i] - bsrstart; 770d6de1c52SSatish Balay for (j=0; j<n; j++) { 771590ac198SBarry Smith if (idxn[j] < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Negative column: %d",idxn[j]); 772590ac198SBarry Smith if (idxn[j] >= mat->N) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %d max %d",idxn[j],mat->N-1); 773d6de1c52SSatish Balay if (idxn[j] >= bscstart && idxn[j] < bscend){ 774d6de1c52SSatish Balay col = idxn[j] - bscstart; 77598dd23e9SBarry Smith ierr = MatGetValues_SeqBAIJ(baij->A,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr); 776d64ed03dSBarry Smith } else { 777905e6a2fSBarry Smith if (!baij->colmap) { 778905e6a2fSBarry Smith ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 779905e6a2fSBarry Smith } 780aa482453SBarry Smith #if defined (PETSC_USE_CTABLE) 7810f5bd95cSBarry Smith ierr = PetscTableFind(baij->colmap,idxn[j]/bs+1,&data);CHKERRQ(ierr); 782fa46199cSSatish Balay data --; 78348e59246SSatish Balay #else 78448e59246SSatish Balay data = baij->colmap[idxn[j]/bs]-1; 78548e59246SSatish Balay #endif 78648e59246SSatish Balay if((data < 0) || (baij->garray[data/bs] != idxn[j]/bs)) *(v+i*n+j) = 0.0; 787d9d09a02SSatish Balay else { 78848e59246SSatish Balay col = data + idxn[j]%bs; 78998dd23e9SBarry Smith ierr = MatGetValues_SeqBAIJ(baij->B,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr); 790d6de1c52SSatish Balay } 791d6de1c52SSatish Balay } 792d6de1c52SSatish Balay } 793d64ed03dSBarry Smith } else { 79429bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"Only local values currently supported"); 795d6de1c52SSatish Balay } 796d6de1c52SSatish Balay } 7973a40ed3dSBarry Smith PetscFunctionReturn(0); 798d6de1c52SSatish Balay } 799d6de1c52SSatish Balay 8004a2ae208SSatish Balay #undef __FUNCT__ 8014a2ae208SSatish Balay #define __FUNCT__ "MatNorm_MPIBAIJ" 802064f8208SBarry Smith int MatNorm_MPIBAIJ(Mat mat,NormType type,PetscReal *nrm) 803d6de1c52SSatish Balay { 804d6de1c52SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 805d6de1c52SSatish Balay Mat_SeqBAIJ *amat = (Mat_SeqBAIJ*)baij->A->data,*bmat = (Mat_SeqBAIJ*)baij->B->data; 806acdf5bf4SSatish Balay int ierr,i,bs2=baij->bs2; 807329f5518SBarry Smith PetscReal sum = 0.0; 8083eda8832SBarry Smith MatScalar *v; 809d6de1c52SSatish Balay 810d64ed03dSBarry Smith PetscFunctionBegin; 811d6de1c52SSatish Balay if (baij->size == 1) { 812064f8208SBarry Smith ierr = MatNorm(baij->A,type,nrm);CHKERRQ(ierr); 813d6de1c52SSatish Balay } else { 814d6de1c52SSatish Balay if (type == NORM_FROBENIUS) { 815d6de1c52SSatish Balay v = amat->a; 816d6de1c52SSatish Balay for (i=0; i<amat->nz*bs2; i++) { 817aa482453SBarry Smith #if defined(PETSC_USE_COMPLEX) 818329f5518SBarry Smith sum += PetscRealPart(PetscConj(*v)*(*v)); v++; 819d6de1c52SSatish Balay #else 820d6de1c52SSatish Balay sum += (*v)*(*v); v++; 821d6de1c52SSatish Balay #endif 822d6de1c52SSatish Balay } 823d6de1c52SSatish Balay v = bmat->a; 824d6de1c52SSatish Balay for (i=0; i<bmat->nz*bs2; i++) { 825aa482453SBarry Smith #if defined(PETSC_USE_COMPLEX) 826329f5518SBarry Smith sum += PetscRealPart(PetscConj(*v)*(*v)); v++; 827d6de1c52SSatish Balay #else 828d6de1c52SSatish Balay sum += (*v)*(*v); v++; 829d6de1c52SSatish Balay #endif 830d6de1c52SSatish Balay } 831064f8208SBarry Smith ierr = MPI_Allreduce(&sum,nrm,1,MPIU_REAL,MPI_SUM,mat->comm);CHKERRQ(ierr); 832064f8208SBarry Smith *nrm = sqrt(*nrm); 833d64ed03dSBarry Smith } else { 83429bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"No support for this norm yet"); 835d6de1c52SSatish Balay } 836d64ed03dSBarry Smith } 8373a40ed3dSBarry Smith PetscFunctionReturn(0); 838d6de1c52SSatish Balay } 83957b952d6SSatish Balay 840bd7f49f5SSatish Balay 841fef45726SSatish Balay /* 842fef45726SSatish Balay Creates the hash table, and sets the table 843fef45726SSatish Balay This table is created only once. 844fef45726SSatish Balay If new entried need to be added to the matrix 845fef45726SSatish Balay then the hash table has to be destroyed and 846fef45726SSatish Balay recreated. 847fef45726SSatish Balay */ 8484a2ae208SSatish Balay #undef __FUNCT__ 8494a2ae208SSatish Balay #define __FUNCT__ "MatCreateHashTable_MPIBAIJ_Private" 850329f5518SBarry Smith int MatCreateHashTable_MPIBAIJ_Private(Mat mat,PetscReal factor) 851596b8d2eSBarry Smith { 852596b8d2eSBarry Smith Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 853596b8d2eSBarry Smith Mat A = baij->A,B=baij->B; 854596b8d2eSBarry Smith Mat_SeqBAIJ *a=(Mat_SeqBAIJ *)A->data,*b=(Mat_SeqBAIJ *)B->data; 8550bdbc534SSatish Balay int i,j,k,nz=a->nz+b->nz,h1,*ai=a->i,*aj=a->j,*bi=b->i,*bj=b->j; 856549d3d68SSatish Balay int size,bs2=baij->bs2,rstart=baij->rstart,ierr; 857187ce0cbSSatish Balay int cstart=baij->cstart,*garray=baij->garray,row,col,Nbs=baij->Nbs; 858fef45726SSatish Balay int *HT,key; 8593eda8832SBarry Smith MatScalar **HD; 860329f5518SBarry Smith PetscReal tmp; 861aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g) 8624a15367fSSatish Balay int ct=0,max=0; 8634a15367fSSatish Balay #endif 864fef45726SSatish Balay 865d64ed03dSBarry Smith PetscFunctionBegin; 8660bdbc534SSatish Balay baij->ht_size=(int)(factor*nz); 8670bdbc534SSatish Balay size = baij->ht_size; 868fef45726SSatish Balay 8690bdbc534SSatish Balay if (baij->ht) { 8700bdbc534SSatish Balay PetscFunctionReturn(0); 871596b8d2eSBarry Smith } 8720bdbc534SSatish Balay 873fef45726SSatish Balay /* Allocate Memory for Hash Table */ 874b0a32e0cSBarry Smith ierr = PetscMalloc((size)*(sizeof(int)+sizeof(MatScalar*))+1,&baij->hd);CHKERRQ(ierr); 875b9e4cc15SSatish Balay baij->ht = (int*)(baij->hd + size); 876b9e4cc15SSatish Balay HD = baij->hd; 877a07cd24cSSatish Balay HT = baij->ht; 878b9e4cc15SSatish Balay 879b9e4cc15SSatish Balay 88087828ca2SBarry Smith ierr = PetscMemzero(HD,size*(sizeof(int)+sizeof(PetscScalar*)));CHKERRQ(ierr); 8810bdbc534SSatish Balay 882596b8d2eSBarry Smith 883596b8d2eSBarry Smith /* Loop Over A */ 8840bdbc534SSatish Balay for (i=0; i<a->mbs; i++) { 885596b8d2eSBarry Smith for (j=ai[i]; j<ai[i+1]; j++) { 8860bdbc534SSatish Balay row = i+rstart; 8870bdbc534SSatish Balay col = aj[j]+cstart; 888596b8d2eSBarry Smith 889187ce0cbSSatish Balay key = row*Nbs + col + 1; 890c2760754SSatish Balay h1 = HASH(size,key,tmp); 8910bdbc534SSatish Balay for (k=0; k<size; k++){ 8920bdbc534SSatish Balay if (HT[(h1+k)%size] == 0.0) { 8930bdbc534SSatish Balay HT[(h1+k)%size] = key; 8940bdbc534SSatish Balay HD[(h1+k)%size] = a->a + j*bs2; 895596b8d2eSBarry Smith break; 896aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g) 897187ce0cbSSatish Balay } else { 898187ce0cbSSatish Balay ct++; 899187ce0cbSSatish Balay #endif 900596b8d2eSBarry Smith } 901187ce0cbSSatish Balay } 902aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g) 903187ce0cbSSatish Balay if (k> max) max = k; 904187ce0cbSSatish Balay #endif 905596b8d2eSBarry Smith } 906596b8d2eSBarry Smith } 907596b8d2eSBarry Smith /* Loop Over B */ 9080bdbc534SSatish Balay for (i=0; i<b->mbs; i++) { 909596b8d2eSBarry Smith for (j=bi[i]; j<bi[i+1]; j++) { 9100bdbc534SSatish Balay row = i+rstart; 9110bdbc534SSatish Balay col = garray[bj[j]]; 912187ce0cbSSatish Balay key = row*Nbs + col + 1; 913c2760754SSatish Balay h1 = HASH(size,key,tmp); 9140bdbc534SSatish Balay for (k=0; k<size; k++){ 9150bdbc534SSatish Balay if (HT[(h1+k)%size] == 0.0) { 9160bdbc534SSatish Balay HT[(h1+k)%size] = key; 9170bdbc534SSatish Balay HD[(h1+k)%size] = b->a + j*bs2; 918596b8d2eSBarry Smith break; 919aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g) 920187ce0cbSSatish Balay } else { 921187ce0cbSSatish Balay ct++; 922187ce0cbSSatish Balay #endif 923596b8d2eSBarry Smith } 924187ce0cbSSatish Balay } 925aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g) 926187ce0cbSSatish Balay if (k> max) max = k; 927187ce0cbSSatish Balay #endif 928596b8d2eSBarry Smith } 929596b8d2eSBarry Smith } 930596b8d2eSBarry Smith 931596b8d2eSBarry Smith /* Print Summary */ 932aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g) 933c38d4ed2SBarry Smith for (i=0,j=0; i<size; i++) { 934596b8d2eSBarry Smith if (HT[i]) {j++;} 935c38d4ed2SBarry Smith } 936b0a32e0cSBarry Smith PetscLogInfo(0,"MatCreateHashTable_MPIBAIJ_Private: Average Search = %5.2f,max search = %d\n",(j== 0)? 0.0:((PetscReal)(ct+j))/j,max); 937187ce0cbSSatish Balay #endif 9383a40ed3dSBarry Smith PetscFunctionReturn(0); 939596b8d2eSBarry Smith } 94057b952d6SSatish Balay 9414a2ae208SSatish Balay #undef __FUNCT__ 9424a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyBegin_MPIBAIJ" 943bbb85fb3SSatish Balay int MatAssemblyBegin_MPIBAIJ(Mat mat,MatAssemblyType mode) 944bbb85fb3SSatish Balay { 945bbb85fb3SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 946ff2fd236SBarry Smith int ierr,nstash,reallocs; 947bbb85fb3SSatish Balay InsertMode addv; 948bbb85fb3SSatish Balay 949bbb85fb3SSatish Balay PetscFunctionBegin; 950bbb85fb3SSatish Balay if (baij->donotstash) { 951bbb85fb3SSatish Balay PetscFunctionReturn(0); 952bbb85fb3SSatish Balay } 953bbb85fb3SSatish Balay 954bbb85fb3SSatish Balay /* make sure all processors are either in INSERTMODE or ADDMODE */ 955bbb85fb3SSatish Balay ierr = MPI_Allreduce(&mat->insertmode,&addv,1,MPI_INT,MPI_BOR,mat->comm);CHKERRQ(ierr); 956bbb85fb3SSatish Balay if (addv == (ADD_VALUES|INSERT_VALUES)) { 95729bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Some processors inserted others added"); 958bbb85fb3SSatish Balay } 959bbb85fb3SSatish Balay mat->insertmode = addv; /* in case this processor had no cache */ 960bbb85fb3SSatish Balay 9618798bf22SSatish Balay ierr = MatStashScatterBegin_Private(&mat->stash,baij->rowners_bs);CHKERRQ(ierr); 9628798bf22SSatish Balay ierr = MatStashScatterBegin_Private(&mat->bstash,baij->rowners);CHKERRQ(ierr); 9638798bf22SSatish Balay ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr); 964b0a32e0cSBarry Smith PetscLogInfo(0,"MatAssemblyBegin_MPIBAIJ:Stash has %d entries,uses %d mallocs.\n",nstash,reallocs); 96546680499SSatish Balay ierr = MatStashGetInfo_Private(&mat->bstash,&nstash,&reallocs);CHKERRQ(ierr); 966b0a32e0cSBarry Smith PetscLogInfo(0,"MatAssemblyBegin_MPIBAIJ:Block-Stash has %d entries, uses %d mallocs.\n",nstash,reallocs); 967bbb85fb3SSatish Balay PetscFunctionReturn(0); 968bbb85fb3SSatish Balay } 969bbb85fb3SSatish Balay 9704a2ae208SSatish Balay #undef __FUNCT__ 9714a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyEnd_MPIBAIJ" 972bbb85fb3SSatish Balay int MatAssemblyEnd_MPIBAIJ(Mat mat,MatAssemblyType mode) 973bbb85fb3SSatish Balay { 974bbb85fb3SSatish Balay Mat_MPIBAIJ *baij=(Mat_MPIBAIJ*)mat->data; 975a2d1c673SSatish Balay Mat_SeqBAIJ *a=(Mat_SeqBAIJ*)baij->A->data,*b=(Mat_SeqBAIJ*)baij->B->data; 976a2d1c673SSatish Balay int i,j,rstart,ncols,n,ierr,flg,bs2=baij->bs2; 9777c922b88SBarry Smith int *row,*col,other_disassembled; 9787c922b88SBarry Smith PetscTruth r1,r2,r3; 9793eda8832SBarry Smith MatScalar *val; 980bbb85fb3SSatish Balay InsertMode addv = mat->insertmode; 981bbb85fb3SSatish Balay 982bbb85fb3SSatish Balay PetscFunctionBegin; 983bbb85fb3SSatish Balay if (!baij->donotstash) { 984a2d1c673SSatish Balay while (1) { 9858798bf22SSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 986a2d1c673SSatish Balay if (!flg) break; 987a2d1c673SSatish Balay 988bbb85fb3SSatish Balay for (i=0; i<n;) { 989bbb85fb3SSatish Balay /* Now identify the consecutive vals belonging to the same row */ 990bbb85fb3SSatish Balay for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; } 991bbb85fb3SSatish Balay if (j < n) ncols = j-i; 992bbb85fb3SSatish Balay else ncols = n-i; 993bbb85fb3SSatish Balay /* Now assemble all these values with a single function call */ 99493fea6afSBarry Smith ierr = MatSetValues_MPIBAIJ_MatScalar(mat,1,row+i,ncols,col+i,val+i,addv);CHKERRQ(ierr); 995bbb85fb3SSatish Balay i = j; 996bbb85fb3SSatish Balay } 997bbb85fb3SSatish Balay } 9988798bf22SSatish Balay ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr); 999a2d1c673SSatish Balay /* Now process the block-stash. Since the values are stashed column-oriented, 1000a2d1c673SSatish Balay set the roworiented flag to column oriented, and after MatSetValues() 1001a2d1c673SSatish Balay restore the original flags */ 1002a2d1c673SSatish Balay r1 = baij->roworiented; 1003a2d1c673SSatish Balay r2 = a->roworiented; 1004a2d1c673SSatish Balay r3 = b->roworiented; 10057c922b88SBarry Smith baij->roworiented = PETSC_FALSE; 10067c922b88SBarry Smith a->roworiented = PETSC_FALSE; 10077c922b88SBarry Smith b->roworiented = PETSC_FALSE; 1008a2d1c673SSatish Balay while (1) { 10098798bf22SSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->bstash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 1010a2d1c673SSatish Balay if (!flg) break; 1011a2d1c673SSatish Balay 1012a2d1c673SSatish Balay for (i=0; i<n;) { 1013a2d1c673SSatish Balay /* Now identify the consecutive vals belonging to the same row */ 1014a2d1c673SSatish Balay for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; } 1015a2d1c673SSatish Balay if (j < n) ncols = j-i; 1016a2d1c673SSatish Balay else ncols = n-i; 101793fea6afSBarry Smith ierr = MatSetValuesBlocked_MPIBAIJ_MatScalar(mat,1,row+i,ncols,col+i,val+i*bs2,addv);CHKERRQ(ierr); 1018a2d1c673SSatish Balay i = j; 1019a2d1c673SSatish Balay } 1020a2d1c673SSatish Balay } 10218798bf22SSatish Balay ierr = MatStashScatterEnd_Private(&mat->bstash);CHKERRQ(ierr); 1022a2d1c673SSatish Balay baij->roworiented = r1; 1023a2d1c673SSatish Balay a->roworiented = r2; 1024a2d1c673SSatish Balay b->roworiented = r3; 1025bbb85fb3SSatish Balay } 1026bbb85fb3SSatish Balay 1027bbb85fb3SSatish Balay ierr = MatAssemblyBegin(baij->A,mode);CHKERRQ(ierr); 1028bbb85fb3SSatish Balay ierr = MatAssemblyEnd(baij->A,mode);CHKERRQ(ierr); 1029bbb85fb3SSatish Balay 1030bbb85fb3SSatish Balay /* determine if any processor has disassembled, if so we must 1031bbb85fb3SSatish Balay also disassemble ourselfs, in order that we may reassemble. */ 1032bbb85fb3SSatish Balay /* 1033bbb85fb3SSatish Balay if nonzero structure of submatrix B cannot change then we know that 1034bbb85fb3SSatish Balay no processor disassembled thus we can skip this stuff 1035bbb85fb3SSatish Balay */ 1036bbb85fb3SSatish Balay if (!((Mat_SeqBAIJ*)baij->B->data)->nonew) { 1037bbb85fb3SSatish Balay ierr = MPI_Allreduce(&mat->was_assembled,&other_disassembled,1,MPI_INT,MPI_PROD,mat->comm);CHKERRQ(ierr); 1038bbb85fb3SSatish Balay if (mat->was_assembled && !other_disassembled) { 1039bbb85fb3SSatish Balay ierr = DisAssemble_MPIBAIJ(mat);CHKERRQ(ierr); 1040bbb85fb3SSatish Balay } 1041bbb85fb3SSatish Balay } 1042bbb85fb3SSatish Balay 1043bbb85fb3SSatish Balay if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) { 1044bbb85fb3SSatish Balay ierr = MatSetUpMultiply_MPIBAIJ(mat);CHKERRQ(ierr); 1045bbb85fb3SSatish Balay } 1046bbb85fb3SSatish Balay ierr = MatAssemblyBegin(baij->B,mode);CHKERRQ(ierr); 1047bbb85fb3SSatish Balay ierr = MatAssemblyEnd(baij->B,mode);CHKERRQ(ierr); 1048bbb85fb3SSatish Balay 1049aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g) 1050bbb85fb3SSatish Balay if (baij->ht && mode== MAT_FINAL_ASSEMBLY) { 1051f6275e2eSBarry Smith PetscLogInfo(0,"MatAssemblyEnd_MPIBAIJ:Average Hash Table Search in MatSetValues = %5.2f\n",((PetscReal)baij->ht_total_ct)/baij->ht_insert_ct); 1052bbb85fb3SSatish Balay baij->ht_total_ct = 0; 1053bbb85fb3SSatish Balay baij->ht_insert_ct = 0; 1054bbb85fb3SSatish Balay } 1055bbb85fb3SSatish Balay #endif 1056bbb85fb3SSatish Balay if (baij->ht_flag && !baij->ht && mode == MAT_FINAL_ASSEMBLY) { 1057bbb85fb3SSatish Balay ierr = MatCreateHashTable_MPIBAIJ_Private(mat,baij->ht_fact);CHKERRQ(ierr); 1058bbb85fb3SSatish Balay mat->ops->setvalues = MatSetValues_MPIBAIJ_HT; 1059bbb85fb3SSatish Balay mat->ops->setvaluesblocked = MatSetValuesBlocked_MPIBAIJ_HT; 1060bbb85fb3SSatish Balay } 1061bbb85fb3SSatish Balay 1062606d414cSSatish Balay if (baij->rowvalues) { 1063606d414cSSatish Balay ierr = PetscFree(baij->rowvalues);CHKERRQ(ierr); 1064606d414cSSatish Balay baij->rowvalues = 0; 1065606d414cSSatish Balay } 1066bbb85fb3SSatish Balay PetscFunctionReturn(0); 1067bbb85fb3SSatish Balay } 106857b952d6SSatish Balay 10694a2ae208SSatish Balay #undef __FUNCT__ 10704a2ae208SSatish Balay #define __FUNCT__ "MatView_MPIBAIJ_ASCIIorDraworSocket" 1071b0a32e0cSBarry Smith static int MatView_MPIBAIJ_ASCIIorDraworSocket(Mat mat,PetscViewer viewer) 107257b952d6SSatish Balay { 107357b952d6SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 1074fb9695e5SSatish Balay int ierr,bs = baij->bs,size = baij->size,rank = baij->rank; 10756831982aSBarry Smith PetscTruth isascii,isdraw; 1076b0a32e0cSBarry Smith PetscViewer sviewer; 1077f3ef73ceSBarry Smith PetscViewerFormat format; 107857b952d6SSatish Balay 1079d64ed03dSBarry Smith PetscFunctionBegin; 1080f81bd7ccSHong Zhang /* printf(" MatView_MPIBAIJ_ASCIIorDraworSocket is called ...\n"); */ 1081b0a32e0cSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&isascii);CHKERRQ(ierr); 1082fb9695e5SSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr); 10830f5bd95cSBarry Smith if (isascii) { 1084b0a32e0cSBarry Smith ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr); 1085456192e2SBarry Smith if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 10864e220ebcSLois Curfman McInnes MatInfo info; 1087d132466eSBarry Smith ierr = MPI_Comm_rank(mat->comm,&rank);CHKERRQ(ierr); 1088d41123aaSBarry Smith ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr); 1089b0a32e0cSBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Local rows %d nz %d nz alloced %d bs %d mem %d\n", 1090273d9f13SBarry Smith rank,mat->m,(int)info.nz_used*bs,(int)info.nz_allocated*bs, 10916831982aSBarry Smith baij->bs,(int)info.memory);CHKERRQ(ierr); 1092d132466eSBarry Smith ierr = MatGetInfo(baij->A,MAT_LOCAL,&info);CHKERRQ(ierr); 1093b0a32e0cSBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] on-diagonal part: nz %d \n",rank,(int)info.nz_used*bs);CHKERRQ(ierr); 1094d132466eSBarry Smith ierr = MatGetInfo(baij->B,MAT_LOCAL,&info);CHKERRQ(ierr); 1095b0a32e0cSBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] off-diagonal part: nz %d \n",rank,(int)info.nz_used*bs);CHKERRQ(ierr); 1096b0a32e0cSBarry Smith ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 109757b952d6SSatish Balay ierr = VecScatterView(baij->Mvctx,viewer);CHKERRQ(ierr); 10983a40ed3dSBarry Smith PetscFunctionReturn(0); 1099fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_INFO) { 1100b0a32e0cSBarry Smith ierr = PetscViewerASCIIPrintf(viewer," block size is %d\n",bs);CHKERRQ(ierr); 11013a40ed3dSBarry Smith PetscFunctionReturn(0); 110204929863SHong Zhang } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) { 110304929863SHong Zhang PetscFunctionReturn(0); 110457b952d6SSatish Balay } 110557b952d6SSatish Balay } 110657b952d6SSatish Balay 11070f5bd95cSBarry Smith if (isdraw) { 1108b0a32e0cSBarry Smith PetscDraw draw; 110957b952d6SSatish Balay PetscTruth isnull; 1110b0a32e0cSBarry Smith ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr); 1111b0a32e0cSBarry Smith ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); if (isnull) PetscFunctionReturn(0); 111257b952d6SSatish Balay } 111357b952d6SSatish Balay 111457b952d6SSatish Balay if (size == 1) { 1115873048abSBarry Smith ierr = PetscObjectSetName((PetscObject)baij->A,mat->name);CHKERRQ(ierr); 111657b952d6SSatish Balay ierr = MatView(baij->A,viewer);CHKERRQ(ierr); 1117d64ed03dSBarry Smith } else { 111857b952d6SSatish Balay /* assemble the entire matrix onto first processor. */ 111957b952d6SSatish Balay Mat A; 112057b952d6SSatish Balay Mat_SeqBAIJ *Aloc; 1121273d9f13SBarry Smith int M = mat->M,N = mat->N,*ai,*aj,col,i,j,k,*rvals,mbs = baij->mbs; 11223eda8832SBarry Smith MatScalar *a; 112357b952d6SSatish Balay 112457b952d6SSatish Balay if (!rank) { 112555843e3eSBarry Smith ierr = MatCreateMPIBAIJ(mat->comm,baij->bs,M,N,M,N,0,PETSC_NULL,0,PETSC_NULL,&A);CHKERRQ(ierr); 1126d64ed03dSBarry Smith } else { 112755843e3eSBarry Smith ierr = MatCreateMPIBAIJ(mat->comm,baij->bs,0,0,M,N,0,PETSC_NULL,0,PETSC_NULL,&A);CHKERRQ(ierr); 112857b952d6SSatish Balay } 1129b0a32e0cSBarry Smith PetscLogObjectParent(mat,A); 113057b952d6SSatish Balay 113157b952d6SSatish Balay /* copy over the A part */ 113257b952d6SSatish Balay Aloc = (Mat_SeqBAIJ*)baij->A->data; 113357b952d6SSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 113482502324SSatish Balay ierr = PetscMalloc(bs*sizeof(int),&rvals);CHKERRQ(ierr); 113557b952d6SSatish Balay 113657b952d6SSatish Balay for (i=0; i<mbs; i++) { 113757b952d6SSatish Balay rvals[0] = bs*(baij->rstart + i); 113857b952d6SSatish Balay for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; } 113957b952d6SSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 114057b952d6SSatish Balay col = (baij->cstart+aj[j])*bs; 114157b952d6SSatish Balay for (k=0; k<bs; k++) { 114293fea6afSBarry Smith ierr = MatSetValues_MPIBAIJ_MatScalar(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 1143cee3aa6bSSatish Balay col++; a += bs; 114457b952d6SSatish Balay } 114557b952d6SSatish Balay } 114657b952d6SSatish Balay } 114757b952d6SSatish Balay /* copy over the B part */ 114857b952d6SSatish Balay Aloc = (Mat_SeqBAIJ*)baij->B->data; 114957b952d6SSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 115057b952d6SSatish Balay for (i=0; i<mbs; i++) { 115157b952d6SSatish Balay rvals[0] = bs*(baij->rstart + i); 115257b952d6SSatish Balay for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; } 115357b952d6SSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 115457b952d6SSatish Balay col = baij->garray[aj[j]]*bs; 115557b952d6SSatish Balay for (k=0; k<bs; k++) { 115693fea6afSBarry Smith ierr = MatSetValues_MPIBAIJ_MatScalar(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 1157cee3aa6bSSatish Balay col++; a += bs; 115857b952d6SSatish Balay } 115957b952d6SSatish Balay } 116057b952d6SSatish Balay } 1161606d414cSSatish Balay ierr = PetscFree(rvals);CHKERRQ(ierr); 11626d4a8577SBarry Smith ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 11636d4a8577SBarry Smith ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 116455843e3eSBarry Smith /* 116555843e3eSBarry Smith Everyone has to call to draw the matrix since the graphics waits are 1166b0a32e0cSBarry Smith synchronized across all processors that share the PetscDraw object 116755843e3eSBarry Smith */ 1168b0a32e0cSBarry Smith ierr = PetscViewerGetSingleton(viewer,&sviewer);CHKERRQ(ierr); 1169f14a1c24SBarry Smith if (!rank) { 1170e36acaf3SBarry Smith ierr = PetscObjectSetName((PetscObject)((Mat_MPIBAIJ*)(A->data))->A,mat->name);CHKERRQ(ierr); 11716831982aSBarry Smith ierr = MatView(((Mat_MPIBAIJ*)(A->data))->A,sviewer);CHKERRQ(ierr); 117257b952d6SSatish Balay } 1173b0a32e0cSBarry Smith ierr = PetscViewerRestoreSingleton(viewer,&sviewer);CHKERRQ(ierr); 117457b952d6SSatish Balay ierr = MatDestroy(A);CHKERRQ(ierr); 117557b952d6SSatish Balay } 11763a40ed3dSBarry Smith PetscFunctionReturn(0); 117757b952d6SSatish Balay } 117857b952d6SSatish Balay 11794a2ae208SSatish Balay #undef __FUNCT__ 11804a2ae208SSatish Balay #define __FUNCT__ "MatView_MPIBAIJ" 1181b0a32e0cSBarry Smith int MatView_MPIBAIJ(Mat mat,PetscViewer viewer) 118257b952d6SSatish Balay { 118357b952d6SSatish Balay int ierr; 11846831982aSBarry Smith PetscTruth isascii,isdraw,issocket,isbinary; 118557b952d6SSatish Balay 1186d64ed03dSBarry Smith PetscFunctionBegin; 1187b0a32e0cSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&isascii);CHKERRQ(ierr); 1188fb9695e5SSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr); 1189b0a32e0cSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_SOCKET,&issocket);CHKERRQ(ierr); 1190fb9695e5SSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_BINARY,&isbinary);CHKERRQ(ierr); 11910f5bd95cSBarry Smith if (isascii || isdraw || issocket || isbinary) { 11927b2a1423SBarry Smith ierr = MatView_MPIBAIJ_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr); 11935cd90555SBarry Smith } else { 119429bbc08cSBarry Smith SETERRQ1(1,"Viewer type %s not supported by MPIBAIJ matrices",((PetscObject)viewer)->type_name); 119557b952d6SSatish Balay } 11963a40ed3dSBarry Smith PetscFunctionReturn(0); 119757b952d6SSatish Balay } 119857b952d6SSatish Balay 11994a2ae208SSatish Balay #undef __FUNCT__ 12004a2ae208SSatish Balay #define __FUNCT__ "MatDestroy_MPIBAIJ" 1201e1311b90SBarry Smith int MatDestroy_MPIBAIJ(Mat mat) 120279bdfe76SSatish Balay { 120379bdfe76SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 120479bdfe76SSatish Balay int ierr; 120579bdfe76SSatish Balay 1206d64ed03dSBarry Smith PetscFunctionBegin; 1207aa482453SBarry Smith #if defined(PETSC_USE_LOG) 1208b0a32e0cSBarry Smith PetscLogObjectState((PetscObject)mat,"Rows=%d,Cols=%d",mat->M,mat->N); 120979bdfe76SSatish Balay #endif 12108798bf22SSatish Balay ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr); 12118798bf22SSatish Balay ierr = MatStashDestroy_Private(&mat->bstash);CHKERRQ(ierr); 1212606d414cSSatish Balay ierr = PetscFree(baij->rowners);CHKERRQ(ierr); 121379bdfe76SSatish Balay ierr = MatDestroy(baij->A);CHKERRQ(ierr); 121479bdfe76SSatish Balay ierr = MatDestroy(baij->B);CHKERRQ(ierr); 1215aa482453SBarry Smith #if defined (PETSC_USE_CTABLE) 12160f5bd95cSBarry Smith if (baij->colmap) {ierr = PetscTableDelete(baij->colmap);CHKERRQ(ierr);} 121748e59246SSatish Balay #else 1218606d414cSSatish Balay if (baij->colmap) {ierr = PetscFree(baij->colmap);CHKERRQ(ierr);} 121948e59246SSatish Balay #endif 1220606d414cSSatish Balay if (baij->garray) {ierr = PetscFree(baij->garray);CHKERRQ(ierr);} 1221606d414cSSatish Balay if (baij->lvec) {ierr = VecDestroy(baij->lvec);CHKERRQ(ierr);} 1222606d414cSSatish Balay if (baij->Mvctx) {ierr = VecScatterDestroy(baij->Mvctx);CHKERRQ(ierr);} 1223606d414cSSatish Balay if (baij->rowvalues) {ierr = PetscFree(baij->rowvalues);CHKERRQ(ierr);} 1224606d414cSSatish Balay if (baij->barray) {ierr = PetscFree(baij->barray);CHKERRQ(ierr);} 1225606d414cSSatish Balay if (baij->hd) {ierr = PetscFree(baij->hd);CHKERRQ(ierr);} 12266fa18ffdSBarry Smith #if defined(PETSC_USE_MAT_SINGLE) 12276fa18ffdSBarry Smith if (baij->setvaluescopy) {ierr = PetscFree(baij->setvaluescopy);CHKERRQ(ierr);} 12286fa18ffdSBarry Smith #endif 1229606d414cSSatish Balay ierr = PetscFree(baij);CHKERRQ(ierr); 12303a40ed3dSBarry Smith PetscFunctionReturn(0); 123179bdfe76SSatish Balay } 123279bdfe76SSatish Balay 12334a2ae208SSatish Balay #undef __FUNCT__ 12344a2ae208SSatish Balay #define __FUNCT__ "MatMult_MPIBAIJ" 1235ec1ea8d8SLois Curfman McInnes int MatMult_MPIBAIJ(Mat A,Vec xx,Vec yy) 1236cee3aa6bSSatish Balay { 1237cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 123847b4a8eaSLois Curfman McInnes int ierr,nt; 1239cee3aa6bSSatish Balay 1240d64ed03dSBarry Smith PetscFunctionBegin; 1241e1311b90SBarry Smith ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr); 1242273d9f13SBarry Smith if (nt != A->n) { 124329bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx"); 124447b4a8eaSLois Curfman McInnes } 1245e1311b90SBarry Smith ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr); 1246273d9f13SBarry Smith if (nt != A->m) { 124729bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible parition of A and yy"); 124847b4a8eaSLois Curfman McInnes } 124943a90d84SBarry Smith ierr = VecScatterBegin(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr); 1250f830108cSBarry Smith ierr = (*a->A->ops->mult)(a->A,xx,yy);CHKERRQ(ierr); 125143a90d84SBarry Smith ierr = VecScatterEnd(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr); 1252f830108cSBarry Smith ierr = (*a->B->ops->multadd)(a->B,a->lvec,yy,yy);CHKERRQ(ierr); 125343a90d84SBarry Smith ierr = VecScatterPostRecvs(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr); 12543a40ed3dSBarry Smith PetscFunctionReturn(0); 1255cee3aa6bSSatish Balay } 1256cee3aa6bSSatish Balay 12574a2ae208SSatish Balay #undef __FUNCT__ 12584a2ae208SSatish Balay #define __FUNCT__ "MatMultAdd_MPIBAIJ" 1259ec1ea8d8SLois Curfman McInnes int MatMultAdd_MPIBAIJ(Mat A,Vec xx,Vec yy,Vec zz) 1260cee3aa6bSSatish Balay { 1261cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1262cee3aa6bSSatish Balay int ierr; 1263d64ed03dSBarry Smith 1264d64ed03dSBarry Smith PetscFunctionBegin; 126543a90d84SBarry Smith ierr = VecScatterBegin(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr); 1266f830108cSBarry Smith ierr = (*a->A->ops->multadd)(a->A,xx,yy,zz);CHKERRQ(ierr); 126743a90d84SBarry Smith ierr = VecScatterEnd(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr); 1268f830108cSBarry Smith ierr = (*a->B->ops->multadd)(a->B,a->lvec,zz,zz);CHKERRQ(ierr); 12693a40ed3dSBarry Smith PetscFunctionReturn(0); 1270cee3aa6bSSatish Balay } 1271cee3aa6bSSatish Balay 12724a2ae208SSatish Balay #undef __FUNCT__ 12734a2ae208SSatish Balay #define __FUNCT__ "MatMultTranspose_MPIBAIJ" 12747c922b88SBarry Smith int MatMultTranspose_MPIBAIJ(Mat A,Vec xx,Vec yy) 1275cee3aa6bSSatish Balay { 1276cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1277cee3aa6bSSatish Balay int ierr; 1278cee3aa6bSSatish Balay 1279d64ed03dSBarry Smith PetscFunctionBegin; 1280cee3aa6bSSatish Balay /* do nondiagonal part */ 12817c922b88SBarry Smith ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr); 1282cee3aa6bSSatish Balay /* send it on its way */ 1283537820f0SBarry Smith ierr = VecScatterBegin(a->lvec,yy,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr); 1284cee3aa6bSSatish Balay /* do local part */ 12857c922b88SBarry Smith ierr = (*a->A->ops->multtranspose)(a->A,xx,yy);CHKERRQ(ierr); 1286cee3aa6bSSatish Balay /* receive remote parts: note this assumes the values are not actually */ 1287cee3aa6bSSatish Balay /* inserted in yy until the next line, which is true for my implementation*/ 1288cee3aa6bSSatish Balay /* but is not perhaps always true. */ 1289639f9d9dSBarry Smith ierr = VecScatterEnd(a->lvec,yy,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr); 12903a40ed3dSBarry Smith PetscFunctionReturn(0); 1291cee3aa6bSSatish Balay } 1292cee3aa6bSSatish Balay 12934a2ae208SSatish Balay #undef __FUNCT__ 12944a2ae208SSatish Balay #define __FUNCT__ "MatMultTransposeAdd_MPIBAIJ" 12957c922b88SBarry Smith int MatMultTransposeAdd_MPIBAIJ(Mat A,Vec xx,Vec yy,Vec zz) 1296cee3aa6bSSatish Balay { 1297cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1298cee3aa6bSSatish Balay int ierr; 1299cee3aa6bSSatish Balay 1300d64ed03dSBarry Smith PetscFunctionBegin; 1301cee3aa6bSSatish Balay /* do nondiagonal part */ 13027c922b88SBarry Smith ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr); 1303cee3aa6bSSatish Balay /* send it on its way */ 1304537820f0SBarry Smith ierr = VecScatterBegin(a->lvec,zz,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr); 1305cee3aa6bSSatish Balay /* do local part */ 13067c922b88SBarry Smith ierr = (*a->A->ops->multtransposeadd)(a->A,xx,yy,zz);CHKERRQ(ierr); 1307cee3aa6bSSatish Balay /* receive remote parts: note this assumes the values are not actually */ 1308cee3aa6bSSatish Balay /* inserted in yy until the next line, which is true for my implementation*/ 1309cee3aa6bSSatish Balay /* but is not perhaps always true. */ 1310537820f0SBarry Smith ierr = VecScatterEnd(a->lvec,zz,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr); 13113a40ed3dSBarry Smith PetscFunctionReturn(0); 1312cee3aa6bSSatish Balay } 1313cee3aa6bSSatish Balay 1314cee3aa6bSSatish Balay /* 1315cee3aa6bSSatish Balay This only works correctly for square matrices where the subblock A->A is the 1316cee3aa6bSSatish Balay diagonal block 1317cee3aa6bSSatish Balay */ 13184a2ae208SSatish Balay #undef __FUNCT__ 13194a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonal_MPIBAIJ" 1320ec1ea8d8SLois Curfman McInnes int MatGetDiagonal_MPIBAIJ(Mat A,Vec v) 1321cee3aa6bSSatish Balay { 1322cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 13233a40ed3dSBarry Smith int ierr; 1324d64ed03dSBarry Smith 1325d64ed03dSBarry Smith PetscFunctionBegin; 1326273d9f13SBarry Smith if (A->M != A->N) SETERRQ(PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block"); 13273a40ed3dSBarry Smith ierr = MatGetDiagonal(a->A,v);CHKERRQ(ierr); 13283a40ed3dSBarry Smith PetscFunctionReturn(0); 1329cee3aa6bSSatish Balay } 1330cee3aa6bSSatish Balay 13314a2ae208SSatish Balay #undef __FUNCT__ 13324a2ae208SSatish Balay #define __FUNCT__ "MatScale_MPIBAIJ" 1333268466fbSBarry Smith int MatScale_MPIBAIJ(const PetscScalar *aa,Mat A) 1334cee3aa6bSSatish Balay { 1335cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1336cee3aa6bSSatish Balay int ierr; 1337d64ed03dSBarry Smith 1338d64ed03dSBarry Smith PetscFunctionBegin; 1339cee3aa6bSSatish Balay ierr = MatScale(aa,a->A);CHKERRQ(ierr); 1340cee3aa6bSSatish Balay ierr = MatScale(aa,a->B);CHKERRQ(ierr); 13413a40ed3dSBarry Smith PetscFunctionReturn(0); 1342cee3aa6bSSatish Balay } 1343026e39d0SSatish Balay 13444a2ae208SSatish Balay #undef __FUNCT__ 13454a2ae208SSatish Balay #define __FUNCT__ "MatGetRow_MPIBAIJ" 134687828ca2SBarry Smith int MatGetRow_MPIBAIJ(Mat matin,int row,int *nz,int **idx,PetscScalar **v) 1347acdf5bf4SSatish Balay { 1348acdf5bf4SSatish Balay Mat_MPIBAIJ *mat = (Mat_MPIBAIJ*)matin->data; 134987828ca2SBarry Smith PetscScalar *vworkA,*vworkB,**pvA,**pvB,*v_p; 1350acdf5bf4SSatish Balay int bs = mat->bs,bs2 = mat->bs2,i,ierr,*cworkA,*cworkB,**pcA,**pcB; 1351d9d09a02SSatish Balay int nztot,nzA,nzB,lrow,brstart = mat->rstart*bs,brend = mat->rend*bs; 1352d9d09a02SSatish Balay int *cmap,*idx_p,cstart = mat->cstart; 1353acdf5bf4SSatish Balay 1354d64ed03dSBarry Smith PetscFunctionBegin; 135529bbc08cSBarry Smith if (mat->getrowactive == PETSC_TRUE) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Already active"); 1356acdf5bf4SSatish Balay mat->getrowactive = PETSC_TRUE; 1357acdf5bf4SSatish Balay 1358acdf5bf4SSatish Balay if (!mat->rowvalues && (idx || v)) { 1359acdf5bf4SSatish Balay /* 1360acdf5bf4SSatish Balay allocate enough space to hold information from the longest row. 1361acdf5bf4SSatish Balay */ 1362acdf5bf4SSatish Balay Mat_SeqBAIJ *Aa = (Mat_SeqBAIJ*)mat->A->data,*Ba = (Mat_SeqBAIJ*)mat->B->data; 1363bd16c2feSSatish Balay int max = 1,mbs = mat->mbs,tmp; 1364bd16c2feSSatish Balay for (i=0; i<mbs; i++) { 1365acdf5bf4SSatish Balay tmp = Aa->i[i+1] - Aa->i[i] + Ba->i[i+1] - Ba->i[i]; 1366acdf5bf4SSatish Balay if (max < tmp) { max = tmp; } 1367acdf5bf4SSatish Balay } 136887828ca2SBarry Smith ierr = PetscMalloc(max*bs2*(sizeof(int)+sizeof(PetscScalar)),&mat->rowvalues);CHKERRQ(ierr); 1369acdf5bf4SSatish Balay mat->rowindices = (int*)(mat->rowvalues + max*bs2); 1370acdf5bf4SSatish Balay } 1371acdf5bf4SSatish Balay 137229bbc08cSBarry Smith if (row < brstart || row >= brend) SETERRQ(PETSC_ERR_SUP,"Only local rows") 1373d9d09a02SSatish Balay lrow = row - brstart; 1374acdf5bf4SSatish Balay 1375acdf5bf4SSatish Balay pvA = &vworkA; pcA = &cworkA; pvB = &vworkB; pcB = &cworkB; 1376acdf5bf4SSatish Balay if (!v) {pvA = 0; pvB = 0;} 1377acdf5bf4SSatish Balay if (!idx) {pcA = 0; if (!v) pcB = 0;} 1378f830108cSBarry Smith ierr = (*mat->A->ops->getrow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr); 1379f830108cSBarry Smith ierr = (*mat->B->ops->getrow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr); 1380acdf5bf4SSatish Balay nztot = nzA + nzB; 1381acdf5bf4SSatish Balay 1382acdf5bf4SSatish Balay cmap = mat->garray; 1383acdf5bf4SSatish Balay if (v || idx) { 1384acdf5bf4SSatish Balay if (nztot) { 1385acdf5bf4SSatish Balay /* Sort by increasing column numbers, assuming A and B already sorted */ 1386acdf5bf4SSatish Balay int imark = -1; 1387acdf5bf4SSatish Balay if (v) { 1388acdf5bf4SSatish Balay *v = v_p = mat->rowvalues; 1389acdf5bf4SSatish Balay for (i=0; i<nzB; i++) { 1390d9d09a02SSatish Balay if (cmap[cworkB[i]/bs] < cstart) v_p[i] = vworkB[i]; 1391acdf5bf4SSatish Balay else break; 1392acdf5bf4SSatish Balay } 1393acdf5bf4SSatish Balay imark = i; 1394acdf5bf4SSatish Balay for (i=0; i<nzA; i++) v_p[imark+i] = vworkA[i]; 1395acdf5bf4SSatish Balay for (i=imark; i<nzB; i++) v_p[nzA+i] = vworkB[i]; 1396acdf5bf4SSatish Balay } 1397acdf5bf4SSatish Balay if (idx) { 1398acdf5bf4SSatish Balay *idx = idx_p = mat->rowindices; 1399acdf5bf4SSatish Balay if (imark > -1) { 1400acdf5bf4SSatish Balay for (i=0; i<imark; i++) { 1401bd16c2feSSatish Balay idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs; 1402acdf5bf4SSatish Balay } 1403acdf5bf4SSatish Balay } else { 1404acdf5bf4SSatish Balay for (i=0; i<nzB; i++) { 1405d9d09a02SSatish Balay if (cmap[cworkB[i]/bs] < cstart) 1406d9d09a02SSatish Balay idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ; 1407acdf5bf4SSatish Balay else break; 1408acdf5bf4SSatish Balay } 1409acdf5bf4SSatish Balay imark = i; 1410acdf5bf4SSatish Balay } 1411d9d09a02SSatish Balay for (i=0; i<nzA; i++) idx_p[imark+i] = cstart*bs + cworkA[i]; 1412d9d09a02SSatish Balay for (i=imark; i<nzB; i++) idx_p[nzA+i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ; 1413acdf5bf4SSatish Balay } 1414d64ed03dSBarry Smith } else { 1415d212a18eSSatish Balay if (idx) *idx = 0; 1416d212a18eSSatish Balay if (v) *v = 0; 1417d212a18eSSatish Balay } 1418acdf5bf4SSatish Balay } 1419acdf5bf4SSatish Balay *nz = nztot; 1420f830108cSBarry Smith ierr = (*mat->A->ops->restorerow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr); 1421f830108cSBarry Smith ierr = (*mat->B->ops->restorerow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr); 14223a40ed3dSBarry Smith PetscFunctionReturn(0); 1423acdf5bf4SSatish Balay } 1424acdf5bf4SSatish Balay 14254a2ae208SSatish Balay #undef __FUNCT__ 14264a2ae208SSatish Balay #define __FUNCT__ "MatRestoreRow_MPIBAIJ" 142787828ca2SBarry Smith int MatRestoreRow_MPIBAIJ(Mat mat,int row,int *nz,int **idx,PetscScalar **v) 1428acdf5bf4SSatish Balay { 1429acdf5bf4SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 1430d64ed03dSBarry Smith 1431d64ed03dSBarry Smith PetscFunctionBegin; 1432acdf5bf4SSatish Balay if (baij->getrowactive == PETSC_FALSE) { 143329bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"MatGetRow not called"); 1434acdf5bf4SSatish Balay } 1435acdf5bf4SSatish Balay baij->getrowactive = PETSC_FALSE; 14363a40ed3dSBarry Smith PetscFunctionReturn(0); 1437acdf5bf4SSatish Balay } 1438acdf5bf4SSatish Balay 14394a2ae208SSatish Balay #undef __FUNCT__ 14404a2ae208SSatish Balay #define __FUNCT__ "MatGetBlockSize_MPIBAIJ" 1441ec1ea8d8SLois Curfman McInnes int MatGetBlockSize_MPIBAIJ(Mat mat,int *bs) 14425a838052SSatish Balay { 14435a838052SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 1444d64ed03dSBarry Smith 1445d64ed03dSBarry Smith PetscFunctionBegin; 14465a838052SSatish Balay *bs = baij->bs; 14473a40ed3dSBarry Smith PetscFunctionReturn(0); 14485a838052SSatish Balay } 14495a838052SSatish Balay 14504a2ae208SSatish Balay #undef __FUNCT__ 14514a2ae208SSatish Balay #define __FUNCT__ "MatZeroEntries_MPIBAIJ" 1452ec1ea8d8SLois Curfman McInnes int MatZeroEntries_MPIBAIJ(Mat A) 145358667388SSatish Balay { 145458667388SSatish Balay Mat_MPIBAIJ *l = (Mat_MPIBAIJ*)A->data; 145558667388SSatish Balay int ierr; 1456d64ed03dSBarry Smith 1457d64ed03dSBarry Smith PetscFunctionBegin; 145858667388SSatish Balay ierr = MatZeroEntries(l->A);CHKERRQ(ierr); 145958667388SSatish Balay ierr = MatZeroEntries(l->B);CHKERRQ(ierr); 14603a40ed3dSBarry Smith PetscFunctionReturn(0); 146158667388SSatish Balay } 14620ac07820SSatish Balay 14634a2ae208SSatish Balay #undef __FUNCT__ 14644a2ae208SSatish Balay #define __FUNCT__ "MatGetInfo_MPIBAIJ" 1465ec1ea8d8SLois Curfman McInnes int MatGetInfo_MPIBAIJ(Mat matin,MatInfoType flag,MatInfo *info) 14660ac07820SSatish Balay { 14674e220ebcSLois Curfman McInnes Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)matin->data; 14684e220ebcSLois Curfman McInnes Mat A = a->A,B = a->B; 14697d57db60SLois Curfman McInnes int ierr; 1470329f5518SBarry Smith PetscReal isend[5],irecv[5]; 14710ac07820SSatish Balay 1472d64ed03dSBarry Smith PetscFunctionBegin; 1473f6275e2eSBarry Smith info->block_size = (PetscReal)a->bs; 14744e220ebcSLois Curfman McInnes ierr = MatGetInfo(A,MAT_LOCAL,info);CHKERRQ(ierr); 14750e4b21beSBarry Smith isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded; 1476de87f314SBarry Smith isend[3] = info->memory; isend[4] = info->mallocs; 14774e220ebcSLois Curfman McInnes ierr = MatGetInfo(B,MAT_LOCAL,info);CHKERRQ(ierr); 14780e4b21beSBarry Smith isend[0] += info->nz_used; isend[1] += info->nz_allocated; isend[2] += info->nz_unneeded; 1479de87f314SBarry Smith isend[3] += info->memory; isend[4] += info->mallocs; 14800ac07820SSatish Balay if (flag == MAT_LOCAL) { 14814e220ebcSLois Curfman McInnes info->nz_used = isend[0]; 14824e220ebcSLois Curfman McInnes info->nz_allocated = isend[1]; 14834e220ebcSLois Curfman McInnes info->nz_unneeded = isend[2]; 14844e220ebcSLois Curfman McInnes info->memory = isend[3]; 14854e220ebcSLois Curfman McInnes info->mallocs = isend[4]; 14860ac07820SSatish Balay } else if (flag == MAT_GLOBAL_MAX) { 1487d7d1e502SBarry Smith ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_MAX,matin->comm);CHKERRQ(ierr); 14884e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 14894e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 14904e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 14914e220ebcSLois Curfman McInnes info->memory = irecv[3]; 14924e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 14930ac07820SSatish Balay } else if (flag == MAT_GLOBAL_SUM) { 1494d7d1e502SBarry Smith ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_SUM,matin->comm);CHKERRQ(ierr); 14954e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 14964e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 14974e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 14984e220ebcSLois Curfman McInnes info->memory = irecv[3]; 14994e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 1500d41123aaSBarry Smith } else { 150129bbc08cSBarry Smith SETERRQ1(1,"Unknown MatInfoType argument %d",flag); 15020ac07820SSatish Balay } 1503f6275e2eSBarry Smith info->rows_global = (PetscReal)A->M; 1504f6275e2eSBarry Smith info->columns_global = (PetscReal)A->N; 1505f6275e2eSBarry Smith info->rows_local = (PetscReal)A->m; 1506f6275e2eSBarry Smith info->columns_local = (PetscReal)A->N; 15074e220ebcSLois Curfman McInnes info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */ 15084e220ebcSLois Curfman McInnes info->fill_ratio_needed = 0; 15094e220ebcSLois Curfman McInnes info->factor_mallocs = 0; 15103a40ed3dSBarry Smith PetscFunctionReturn(0); 15110ac07820SSatish Balay } 15120ac07820SSatish Balay 15134a2ae208SSatish Balay #undef __FUNCT__ 15144a2ae208SSatish Balay #define __FUNCT__ "MatSetOption_MPIBAIJ" 1515ec1ea8d8SLois Curfman McInnes int MatSetOption_MPIBAIJ(Mat A,MatOption op) 151658667388SSatish Balay { 151758667388SSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 151898305bb5SBarry Smith int ierr; 151958667388SSatish Balay 1520d64ed03dSBarry Smith PetscFunctionBegin; 152112c028f9SKris Buschelman switch (op) { 152212c028f9SKris Buschelman case MAT_NO_NEW_NONZERO_LOCATIONS: 152312c028f9SKris Buschelman case MAT_YES_NEW_NONZERO_LOCATIONS: 152412c028f9SKris Buschelman case MAT_COLUMNS_UNSORTED: 152512c028f9SKris Buschelman case MAT_COLUMNS_SORTED: 152612c028f9SKris Buschelman case MAT_NEW_NONZERO_ALLOCATION_ERR: 152712c028f9SKris Buschelman case MAT_KEEP_ZEROED_ROWS: 152812c028f9SKris Buschelman case MAT_NEW_NONZERO_LOCATION_ERR: 152998305bb5SBarry Smith ierr = MatSetOption(a->A,op);CHKERRQ(ierr); 153098305bb5SBarry Smith ierr = MatSetOption(a->B,op);CHKERRQ(ierr); 153112c028f9SKris Buschelman break; 153212c028f9SKris Buschelman case MAT_ROW_ORIENTED: 15337c922b88SBarry Smith a->roworiented = PETSC_TRUE; 153498305bb5SBarry Smith ierr = MatSetOption(a->A,op);CHKERRQ(ierr); 153598305bb5SBarry Smith ierr = MatSetOption(a->B,op);CHKERRQ(ierr); 153612c028f9SKris Buschelman break; 153712c028f9SKris Buschelman case MAT_ROWS_SORTED: 153812c028f9SKris Buschelman case MAT_ROWS_UNSORTED: 153912c028f9SKris Buschelman case MAT_YES_NEW_DIAGONALS: 1540b0a32e0cSBarry Smith PetscLogInfo(A,"Info:MatSetOption_MPIBAIJ:Option ignored\n"); 154112c028f9SKris Buschelman break; 154212c028f9SKris Buschelman case MAT_COLUMN_ORIENTED: 15437c922b88SBarry Smith a->roworiented = PETSC_FALSE; 154498305bb5SBarry Smith ierr = MatSetOption(a->A,op);CHKERRQ(ierr); 154598305bb5SBarry Smith ierr = MatSetOption(a->B,op);CHKERRQ(ierr); 154612c028f9SKris Buschelman break; 154712c028f9SKris Buschelman case MAT_IGNORE_OFF_PROC_ENTRIES: 15487c922b88SBarry Smith a->donotstash = PETSC_TRUE; 154912c028f9SKris Buschelman break; 155012c028f9SKris Buschelman case MAT_NO_NEW_DIAGONALS: 155129bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"MAT_NO_NEW_DIAGONALS"); 155212c028f9SKris Buschelman case MAT_USE_HASH_TABLE: 15537c922b88SBarry Smith a->ht_flag = PETSC_TRUE; 155412c028f9SKris Buschelman break; 155577e54ba9SKris Buschelman case MAT_SYMMETRIC: 155677e54ba9SKris Buschelman case MAT_STRUCTURALLY_SYMMETRIC: 15579a4540c5SBarry Smith case MAT_NOT_SYMMETRIC: 15589a4540c5SBarry Smith case MAT_NOT_STRUCTURALLY_SYMMETRIC: 15599a4540c5SBarry Smith case MAT_HERMITIAN: 15609a4540c5SBarry Smith case MAT_NOT_HERMITIAN: 15619a4540c5SBarry Smith case MAT_SYMMETRY_ETERNAL: 15629a4540c5SBarry Smith case MAT_NOT_SYMMETRY_ETERNAL: 156377e54ba9SKris Buschelman break; 156412c028f9SKris Buschelman default: 156529bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"unknown option"); 1566d64ed03dSBarry Smith } 15673a40ed3dSBarry Smith PetscFunctionReturn(0); 156858667388SSatish Balay } 156958667388SSatish Balay 15704a2ae208SSatish Balay #undef __FUNCT__ 15714a2ae208SSatish Balay #define __FUNCT__ "MatTranspose_MPIBAIJ(" 1572ec1ea8d8SLois Curfman McInnes int MatTranspose_MPIBAIJ(Mat A,Mat *matout) 15730ac07820SSatish Balay { 15740ac07820SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)A->data; 15750ac07820SSatish Balay Mat_SeqBAIJ *Aloc; 15760ac07820SSatish Balay Mat B; 1577273d9f13SBarry Smith int ierr,M=A->M,N=A->N,*ai,*aj,i,*rvals,j,k,col; 15780ac07820SSatish Balay int bs=baij->bs,mbs=baij->mbs; 15793eda8832SBarry Smith MatScalar *a; 15800ac07820SSatish Balay 1581d64ed03dSBarry Smith PetscFunctionBegin; 158229bbc08cSBarry Smith if (!matout && M != N) SETERRQ(PETSC_ERR_ARG_SIZ,"Square matrix only for in-place"); 1583273d9f13SBarry Smith ierr = MatCreateMPIBAIJ(A->comm,baij->bs,A->n,A->m,N,M,0,PETSC_NULL,0,PETSC_NULL,&B);CHKERRQ(ierr); 15840ac07820SSatish Balay 15850ac07820SSatish Balay /* copy over the A part */ 15860ac07820SSatish Balay Aloc = (Mat_SeqBAIJ*)baij->A->data; 15870ac07820SSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 158882502324SSatish Balay ierr = PetscMalloc(bs*sizeof(int),&rvals);CHKERRQ(ierr); 15890ac07820SSatish Balay 15900ac07820SSatish Balay for (i=0; i<mbs; i++) { 15910ac07820SSatish Balay rvals[0] = bs*(baij->rstart + i); 15920ac07820SSatish Balay for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; } 15930ac07820SSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 15940ac07820SSatish Balay col = (baij->cstart+aj[j])*bs; 15950ac07820SSatish Balay for (k=0; k<bs; k++) { 159693fea6afSBarry Smith ierr = MatSetValues_MPIBAIJ_MatScalar(B,1,&col,bs,rvals,a,INSERT_VALUES);CHKERRQ(ierr); 15970ac07820SSatish Balay col++; a += bs; 15980ac07820SSatish Balay } 15990ac07820SSatish Balay } 16000ac07820SSatish Balay } 16010ac07820SSatish Balay /* copy over the B part */ 16020ac07820SSatish Balay Aloc = (Mat_SeqBAIJ*)baij->B->data; 16030ac07820SSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 16040ac07820SSatish Balay for (i=0; i<mbs; i++) { 16050ac07820SSatish Balay rvals[0] = bs*(baij->rstart + i); 16060ac07820SSatish Balay for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; } 16070ac07820SSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 16080ac07820SSatish Balay col = baij->garray[aj[j]]*bs; 16090ac07820SSatish Balay for (k=0; k<bs; k++) { 161093fea6afSBarry Smith ierr = MatSetValues_MPIBAIJ_MatScalar(B,1,&col,bs,rvals,a,INSERT_VALUES);CHKERRQ(ierr); 16110ac07820SSatish Balay col++; a += bs; 16120ac07820SSatish Balay } 16130ac07820SSatish Balay } 16140ac07820SSatish Balay } 1615606d414cSSatish Balay ierr = PetscFree(rvals);CHKERRQ(ierr); 16160ac07820SSatish Balay ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 16170ac07820SSatish Balay ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 16180ac07820SSatish Balay 16197c922b88SBarry Smith if (matout) { 16200ac07820SSatish Balay *matout = B; 16210ac07820SSatish Balay } else { 1622273d9f13SBarry Smith ierr = MatHeaderCopy(A,B);CHKERRQ(ierr); 16230ac07820SSatish Balay } 16243a40ed3dSBarry Smith PetscFunctionReturn(0); 16250ac07820SSatish Balay } 16260e95ebc0SSatish Balay 16274a2ae208SSatish Balay #undef __FUNCT__ 16284a2ae208SSatish Balay #define __FUNCT__ "MatDiagonalScale_MPIBAIJ" 162936c4a09eSSatish Balay int MatDiagonalScale_MPIBAIJ(Mat mat,Vec ll,Vec rr) 16300e95ebc0SSatish Balay { 163136c4a09eSSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 163236c4a09eSSatish Balay Mat a = baij->A,b = baij->B; 16330e95ebc0SSatish Balay int ierr,s1,s2,s3; 16340e95ebc0SSatish Balay 1635d64ed03dSBarry Smith PetscFunctionBegin; 163636c4a09eSSatish Balay ierr = MatGetLocalSize(mat,&s2,&s3);CHKERRQ(ierr); 163736c4a09eSSatish Balay if (rr) { 163836c4a09eSSatish Balay ierr = VecGetLocalSize(rr,&s1);CHKERRQ(ierr); 163929bbc08cSBarry Smith if (s1!=s3) SETERRQ(PETSC_ERR_ARG_SIZ,"right vector non-conforming local size"); 164036c4a09eSSatish Balay /* Overlap communication with computation. */ 164136c4a09eSSatish Balay ierr = VecScatterBegin(rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD,baij->Mvctx);CHKERRQ(ierr); 164236c4a09eSSatish Balay } 16430e95ebc0SSatish Balay if (ll) { 16440e95ebc0SSatish Balay ierr = VecGetLocalSize(ll,&s1);CHKERRQ(ierr); 164529bbc08cSBarry Smith if (s1!=s2) SETERRQ(PETSC_ERR_ARG_SIZ,"left vector non-conforming local size"); 1646a21fb8cbSBarry Smith ierr = (*b->ops->diagonalscale)(b,ll,PETSC_NULL);CHKERRQ(ierr); 16470e95ebc0SSatish Balay } 164836c4a09eSSatish Balay /* scale the diagonal block */ 164936c4a09eSSatish Balay ierr = (*a->ops->diagonalscale)(a,ll,rr);CHKERRQ(ierr); 165036c4a09eSSatish Balay 165136c4a09eSSatish Balay if (rr) { 165236c4a09eSSatish Balay /* Do a scatter end and then right scale the off-diagonal block */ 165336c4a09eSSatish Balay ierr = VecScatterEnd(rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD,baij->Mvctx);CHKERRQ(ierr); 1654a21fb8cbSBarry Smith ierr = (*b->ops->diagonalscale)(b,PETSC_NULL,baij->lvec);CHKERRQ(ierr); 165536c4a09eSSatish Balay } 165636c4a09eSSatish Balay 16573a40ed3dSBarry Smith PetscFunctionReturn(0); 16580e95ebc0SSatish Balay } 16590e95ebc0SSatish Balay 16604a2ae208SSatish Balay #undef __FUNCT__ 16614a2ae208SSatish Balay #define __FUNCT__ "MatZeroRows_MPIBAIJ" 1662268466fbSBarry Smith int MatZeroRows_MPIBAIJ(Mat A,IS is,const PetscScalar *diag) 16630ac07820SSatish Balay { 16640ac07820SSatish Balay Mat_MPIBAIJ *l = (Mat_MPIBAIJ*)A->data; 16650ac07820SSatish Balay int i,ierr,N,*rows,*owners = l->rowners,size = l->size; 1666c1dc657dSBarry Smith int *nprocs,j,idx,nsends,row; 16670ac07820SSatish Balay int nmax,*svalues,*starts,*owner,nrecvs,rank = l->rank; 16680ac07820SSatish Balay int *rvalues,tag = A->tag,count,base,slen,n,*source; 1669a07cd24cSSatish Balay int *lens,imdex,*lrows,*values,bs=l->bs,rstart_bs=l->rstart_bs; 16700ac07820SSatish Balay MPI_Comm comm = A->comm; 16710ac07820SSatish Balay MPI_Request *send_waits,*recv_waits; 16720ac07820SSatish Balay MPI_Status recv_status,*send_status; 16730ac07820SSatish Balay IS istmp; 167435d8aa7fSBarry Smith PetscTruth found; 16750ac07820SSatish Balay 1676d64ed03dSBarry Smith PetscFunctionBegin; 1677f14a1c24SBarry Smith ierr = ISGetLocalSize(is,&N);CHKERRQ(ierr); 16780ac07820SSatish Balay ierr = ISGetIndices(is,&rows);CHKERRQ(ierr); 16790ac07820SSatish Balay 16800ac07820SSatish Balay /* first count number of contributors to each processor */ 168182502324SSatish Balay ierr = PetscMalloc(2*size*sizeof(int),&nprocs);CHKERRQ(ierr); 1682549d3d68SSatish Balay ierr = PetscMemzero(nprocs,2*size*sizeof(int));CHKERRQ(ierr); 1683b0a32e0cSBarry Smith ierr = PetscMalloc((N+1)*sizeof(int),&owner);CHKERRQ(ierr); /* see note*/ 16840ac07820SSatish Balay for (i=0; i<N; i++) { 16850ac07820SSatish Balay idx = rows[i]; 168635d8aa7fSBarry Smith found = PETSC_FALSE; 16870ac07820SSatish Balay for (j=0; j<size; j++) { 16880ac07820SSatish Balay if (idx >= owners[j]*bs && idx < owners[j+1]*bs) { 1689c1dc657dSBarry Smith nprocs[2*j]++; nprocs[2*j+1] = 1; owner[i] = j; found = PETSC_TRUE; break; 16900ac07820SSatish Balay } 16910ac07820SSatish Balay } 169229bbc08cSBarry Smith if (!found) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Index out of range"); 16930ac07820SSatish Balay } 1694c1dc657dSBarry Smith nsends = 0; for (i=0; i<size; i++) { nsends += nprocs[2*i+1];} 16950ac07820SSatish Balay 16960ac07820SSatish Balay /* inform other processors of number of messages and max length*/ 1697c1dc657dSBarry Smith ierr = PetscMaxSum(comm,nprocs,&nmax,&nrecvs);CHKERRQ(ierr); 16980ac07820SSatish Balay 16990ac07820SSatish Balay /* post receives: */ 1700b0a32e0cSBarry Smith ierr = PetscMalloc((nrecvs+1)*(nmax+1)*sizeof(int),&rvalues);CHKERRQ(ierr); 1701b0a32e0cSBarry Smith ierr = PetscMalloc((nrecvs+1)*sizeof(MPI_Request),&recv_waits);CHKERRQ(ierr); 17020ac07820SSatish Balay for (i=0; i<nrecvs; i++) { 1703ca161407SBarry Smith ierr = MPI_Irecv(rvalues+nmax*i,nmax,MPI_INT,MPI_ANY_SOURCE,tag,comm,recv_waits+i);CHKERRQ(ierr); 17040ac07820SSatish Balay } 17050ac07820SSatish Balay 17060ac07820SSatish Balay /* do sends: 17070ac07820SSatish Balay 1) starts[i] gives the starting index in svalues for stuff going to 17080ac07820SSatish Balay the ith processor 17090ac07820SSatish Balay */ 1710b0a32e0cSBarry Smith ierr = PetscMalloc((N+1)*sizeof(int),&svalues);CHKERRQ(ierr); 1711b0a32e0cSBarry Smith ierr = PetscMalloc((nsends+1)*sizeof(MPI_Request),&send_waits);CHKERRQ(ierr); 1712b0a32e0cSBarry Smith ierr = PetscMalloc((size+1)*sizeof(int),&starts);CHKERRQ(ierr); 17130ac07820SSatish Balay starts[0] = 0; 1714c1dc657dSBarry Smith for (i=1; i<size; i++) { starts[i] = starts[i-1] + nprocs[2*i-2];} 17150ac07820SSatish Balay for (i=0; i<N; i++) { 17160ac07820SSatish Balay svalues[starts[owner[i]]++] = rows[i]; 17170ac07820SSatish Balay } 17186831982aSBarry Smith ierr = ISRestoreIndices(is,&rows);CHKERRQ(ierr); 17190ac07820SSatish Balay 17200ac07820SSatish Balay starts[0] = 0; 1721c1dc657dSBarry Smith for (i=1; i<size+1; i++) { starts[i] = starts[i-1] + nprocs[2*i-2];} 17220ac07820SSatish Balay count = 0; 17230ac07820SSatish Balay for (i=0; i<size; i++) { 1724c1dc657dSBarry Smith if (nprocs[2*i+1]) { 1725c1dc657dSBarry Smith ierr = MPI_Isend(svalues+starts[i],nprocs[2*i],MPI_INT,i,tag,comm,send_waits+count++);CHKERRQ(ierr); 17260ac07820SSatish Balay } 17270ac07820SSatish Balay } 1728606d414cSSatish Balay ierr = PetscFree(starts);CHKERRQ(ierr); 17290ac07820SSatish Balay 17300ac07820SSatish Balay base = owners[rank]*bs; 17310ac07820SSatish Balay 17320ac07820SSatish Balay /* wait on receives */ 1733b0a32e0cSBarry Smith ierr = PetscMalloc(2*(nrecvs+1)*sizeof(int),&lens);CHKERRQ(ierr); 17340ac07820SSatish Balay source = lens + nrecvs; 17350ac07820SSatish Balay count = nrecvs; slen = 0; 17360ac07820SSatish Balay while (count) { 1737ca161407SBarry Smith ierr = MPI_Waitany(nrecvs,recv_waits,&imdex,&recv_status);CHKERRQ(ierr); 17380ac07820SSatish Balay /* unpack receives into our local space */ 1739ca161407SBarry Smith ierr = MPI_Get_count(&recv_status,MPI_INT,&n);CHKERRQ(ierr); 17400ac07820SSatish Balay source[imdex] = recv_status.MPI_SOURCE; 17410ac07820SSatish Balay lens[imdex] = n; 17420ac07820SSatish Balay slen += n; 17430ac07820SSatish Balay count--; 17440ac07820SSatish Balay } 1745606d414cSSatish Balay ierr = PetscFree(recv_waits);CHKERRQ(ierr); 17460ac07820SSatish Balay 17470ac07820SSatish Balay /* move the data into the send scatter */ 1748b0a32e0cSBarry Smith ierr = PetscMalloc((slen+1)*sizeof(int),&lrows);CHKERRQ(ierr); 17490ac07820SSatish Balay count = 0; 17500ac07820SSatish Balay for (i=0; i<nrecvs; i++) { 17510ac07820SSatish Balay values = rvalues + i*nmax; 17520ac07820SSatish Balay for (j=0; j<lens[i]; j++) { 17530ac07820SSatish Balay lrows[count++] = values[j] - base; 17540ac07820SSatish Balay } 17550ac07820SSatish Balay } 1756606d414cSSatish Balay ierr = PetscFree(rvalues);CHKERRQ(ierr); 1757606d414cSSatish Balay ierr = PetscFree(lens);CHKERRQ(ierr); 1758606d414cSSatish Balay ierr = PetscFree(owner);CHKERRQ(ierr); 1759606d414cSSatish Balay ierr = PetscFree(nprocs);CHKERRQ(ierr); 17600ac07820SSatish Balay 17610ac07820SSatish Balay /* actually zap the local rows */ 1762029af93fSBarry Smith ierr = ISCreateGeneral(PETSC_COMM_SELF,slen,lrows,&istmp);CHKERRQ(ierr); 1763b0a32e0cSBarry Smith PetscLogObjectParent(A,istmp); 1764a07cd24cSSatish Balay 176572dacd9aSBarry Smith /* 176672dacd9aSBarry Smith Zero the required rows. If the "diagonal block" of the matrix 176772dacd9aSBarry Smith is square and the user wishes to set the diagonal we use seperate 176872dacd9aSBarry Smith code so that MatSetValues() is not called for each diagonal allocating 176972dacd9aSBarry Smith new memory, thus calling lots of mallocs and slowing things down. 177072dacd9aSBarry Smith 177172dacd9aSBarry Smith Contributed by: Mathew Knepley 177272dacd9aSBarry Smith */ 17739c957beeSSatish Balay /* must zero l->B before l->A because the (diag) case below may put values into l->B*/ 17746fa18ffdSBarry Smith ierr = MatZeroRows_SeqBAIJ(l->B,istmp,0);CHKERRQ(ierr); 17759c957beeSSatish Balay if (diag && (l->A->M == l->A->N)) { 17766fa18ffdSBarry Smith ierr = MatZeroRows_SeqBAIJ(l->A,istmp,diag);CHKERRQ(ierr); 17779c957beeSSatish Balay } else if (diag) { 17786fa18ffdSBarry Smith ierr = MatZeroRows_SeqBAIJ(l->A,istmp,0);CHKERRQ(ierr); 1779fa46199cSSatish Balay if (((Mat_SeqBAIJ*)l->A->data)->nonew) { 178029bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"MatZeroRows() on rectangular matrices cannot be used with the Mat options \n\ 1781fa46199cSSatish Balay MAT_NO_NEW_NONZERO_LOCATIONS,MAT_NEW_NONZERO_LOCATION_ERR,MAT_NEW_NONZERO_ALLOCATION_ERR"); 17826525c446SSatish Balay } 1783a07cd24cSSatish Balay for (i=0; i<slen; i++) { 1784a07cd24cSSatish Balay row = lrows[i] + rstart_bs; 17853f11ea53SBarry Smith ierr = MatSetValues(A,1,&row,1,&row,diag,INSERT_VALUES);CHKERRQ(ierr); 1786a07cd24cSSatish Balay } 1787a07cd24cSSatish Balay ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 1788a07cd24cSSatish Balay ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 17899c957beeSSatish Balay } else { 17906fa18ffdSBarry Smith ierr = MatZeroRows_SeqBAIJ(l->A,istmp,0);CHKERRQ(ierr); 1791a07cd24cSSatish Balay } 17929c957beeSSatish Balay 17939c957beeSSatish Balay ierr = ISDestroy(istmp);CHKERRQ(ierr); 1794606d414cSSatish Balay ierr = PetscFree(lrows);CHKERRQ(ierr); 1795a07cd24cSSatish Balay 17960ac07820SSatish Balay /* wait on sends */ 17970ac07820SSatish Balay if (nsends) { 179882502324SSatish Balay ierr = PetscMalloc(nsends*sizeof(MPI_Status),&send_status);CHKERRQ(ierr); 1799ca161407SBarry Smith ierr = MPI_Waitall(nsends,send_waits,send_status);CHKERRQ(ierr); 1800606d414cSSatish Balay ierr = PetscFree(send_status);CHKERRQ(ierr); 18010ac07820SSatish Balay } 1802606d414cSSatish Balay ierr = PetscFree(send_waits);CHKERRQ(ierr); 1803606d414cSSatish Balay ierr = PetscFree(svalues);CHKERRQ(ierr); 18040ac07820SSatish Balay 18053a40ed3dSBarry Smith PetscFunctionReturn(0); 18060ac07820SSatish Balay } 180772dacd9aSBarry Smith 18084a2ae208SSatish Balay #undef __FUNCT__ 18094a2ae208SSatish Balay #define __FUNCT__ "MatPrintHelp_MPIBAIJ" 1810ec1ea8d8SLois Curfman McInnes int MatPrintHelp_MPIBAIJ(Mat A) 1811ba4ca20aSSatish Balay { 1812ba4ca20aSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 181325fdafccSSatish Balay MPI_Comm comm = A->comm; 1814133cdb44SSatish Balay static int called = 0; 18153a40ed3dSBarry Smith int ierr; 1816ba4ca20aSSatish Balay 1817d64ed03dSBarry Smith PetscFunctionBegin; 18183a40ed3dSBarry Smith if (!a->rank) { 18193a40ed3dSBarry Smith ierr = MatPrintHelp_SeqBAIJ(a->A);CHKERRQ(ierr); 182025fdafccSSatish Balay } 182125fdafccSSatish Balay if (called) {PetscFunctionReturn(0);} else called = 1; 1822d132466eSBarry Smith ierr = (*PetscHelpPrintf)(comm," Options for MATMPIBAIJ matrix format (the defaults):\n");CHKERRQ(ierr); 1823d132466eSBarry Smith ierr = (*PetscHelpPrintf)(comm," -mat_use_hash_table <factor>: Use hashtable for efficient matrix assembly\n");CHKERRQ(ierr); 18243a40ed3dSBarry Smith PetscFunctionReturn(0); 1825ba4ca20aSSatish Balay } 18260ac07820SSatish Balay 18274a2ae208SSatish Balay #undef __FUNCT__ 18284a2ae208SSatish Balay #define __FUNCT__ "MatSetUnfactored_MPIBAIJ" 1829ec1ea8d8SLois Curfman McInnes int MatSetUnfactored_MPIBAIJ(Mat A) 1830bb5a7306SBarry Smith { 1831bb5a7306SBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1832bb5a7306SBarry Smith int ierr; 1833d64ed03dSBarry Smith 1834d64ed03dSBarry Smith PetscFunctionBegin; 1835bb5a7306SBarry Smith ierr = MatSetUnfactored(a->A);CHKERRQ(ierr); 18363a40ed3dSBarry Smith PetscFunctionReturn(0); 1837bb5a7306SBarry Smith } 1838bb5a7306SBarry Smith 18392e8a6d31SBarry Smith static int MatDuplicate_MPIBAIJ(Mat,MatDuplicateOption,Mat *); 18400ac07820SSatish Balay 18414a2ae208SSatish Balay #undef __FUNCT__ 18424a2ae208SSatish Balay #define __FUNCT__ "MatEqual_MPIBAIJ" 18437fc3c18eSBarry Smith int MatEqual_MPIBAIJ(Mat A,Mat B,PetscTruth *flag) 18447fc3c18eSBarry Smith { 18457fc3c18eSBarry Smith Mat_MPIBAIJ *matB = (Mat_MPIBAIJ*)B->data,*matA = (Mat_MPIBAIJ*)A->data; 18467fc3c18eSBarry Smith Mat a,b,c,d; 18477fc3c18eSBarry Smith PetscTruth flg; 18487fc3c18eSBarry Smith int ierr; 18497fc3c18eSBarry Smith 18507fc3c18eSBarry Smith PetscFunctionBegin; 18517fc3c18eSBarry Smith a = matA->A; b = matA->B; 18527fc3c18eSBarry Smith c = matB->A; d = matB->B; 18537fc3c18eSBarry Smith 18547fc3c18eSBarry Smith ierr = MatEqual(a,c,&flg);CHKERRQ(ierr); 18557fc3c18eSBarry Smith if (flg == PETSC_TRUE) { 18567fc3c18eSBarry Smith ierr = MatEqual(b,d,&flg);CHKERRQ(ierr); 18577fc3c18eSBarry Smith } 18587fc3c18eSBarry Smith ierr = MPI_Allreduce(&flg,flag,1,MPI_INT,MPI_LAND,A->comm);CHKERRQ(ierr); 18597fc3c18eSBarry Smith PetscFunctionReturn(0); 18607fc3c18eSBarry Smith } 18617fc3c18eSBarry Smith 1862273d9f13SBarry Smith 18634a2ae208SSatish Balay #undef __FUNCT__ 18644a2ae208SSatish Balay #define __FUNCT__ "MatSetUpPreallocation_MPIBAIJ" 1865273d9f13SBarry Smith int MatSetUpPreallocation_MPIBAIJ(Mat A) 1866273d9f13SBarry Smith { 1867273d9f13SBarry Smith int ierr; 1868273d9f13SBarry Smith 1869273d9f13SBarry Smith PetscFunctionBegin; 1870273d9f13SBarry Smith ierr = MatMPIBAIJSetPreallocation(A,1,PETSC_DEFAULT,0,PETSC_DEFAULT,0);CHKERRQ(ierr); 1871273d9f13SBarry Smith PetscFunctionReturn(0); 1872273d9f13SBarry Smith } 1873273d9f13SBarry Smith 187479bdfe76SSatish Balay /* -------------------------------------------------------------------*/ 1875cc2dc46cSBarry Smith static struct _MatOps MatOps_Values = { 1876cc2dc46cSBarry Smith MatSetValues_MPIBAIJ, 1877cc2dc46cSBarry Smith MatGetRow_MPIBAIJ, 1878cc2dc46cSBarry Smith MatRestoreRow_MPIBAIJ, 1879cc2dc46cSBarry Smith MatMult_MPIBAIJ, 188097304618SKris Buschelman /* 4*/ MatMultAdd_MPIBAIJ, 18817c922b88SBarry Smith MatMultTranspose_MPIBAIJ, 18827c922b88SBarry Smith MatMultTransposeAdd_MPIBAIJ, 1883cc2dc46cSBarry Smith 0, 1884cc2dc46cSBarry Smith 0, 1885cc2dc46cSBarry Smith 0, 188697304618SKris Buschelman /*10*/ 0, 1887cc2dc46cSBarry Smith 0, 1888cc2dc46cSBarry Smith 0, 1889cc2dc46cSBarry Smith 0, 1890cc2dc46cSBarry Smith MatTranspose_MPIBAIJ, 189197304618SKris Buschelman /*15*/ MatGetInfo_MPIBAIJ, 18927fc3c18eSBarry Smith MatEqual_MPIBAIJ, 1893cc2dc46cSBarry Smith MatGetDiagonal_MPIBAIJ, 1894cc2dc46cSBarry Smith MatDiagonalScale_MPIBAIJ, 1895cc2dc46cSBarry Smith MatNorm_MPIBAIJ, 189697304618SKris Buschelman /*20*/ MatAssemblyBegin_MPIBAIJ, 1897cc2dc46cSBarry Smith MatAssemblyEnd_MPIBAIJ, 1898cc2dc46cSBarry Smith 0, 1899cc2dc46cSBarry Smith MatSetOption_MPIBAIJ, 1900cc2dc46cSBarry Smith MatZeroEntries_MPIBAIJ, 190197304618SKris Buschelman /*25*/ MatZeroRows_MPIBAIJ, 1902cc2dc46cSBarry Smith 0, 1903cc2dc46cSBarry Smith 0, 1904cc2dc46cSBarry Smith 0, 1905cc2dc46cSBarry Smith 0, 190697304618SKris Buschelman /*30*/ MatSetUpPreallocation_MPIBAIJ, 1907273d9f13SBarry Smith 0, 1908cc2dc46cSBarry Smith 0, 1909cc2dc46cSBarry Smith 0, 1910cc2dc46cSBarry Smith 0, 191197304618SKris Buschelman /*35*/ MatDuplicate_MPIBAIJ, 1912cc2dc46cSBarry Smith 0, 1913cc2dc46cSBarry Smith 0, 1914cc2dc46cSBarry Smith 0, 1915cc2dc46cSBarry Smith 0, 191697304618SKris Buschelman /*40*/ 0, 1917cc2dc46cSBarry Smith MatGetSubMatrices_MPIBAIJ, 1918cc2dc46cSBarry Smith MatIncreaseOverlap_MPIBAIJ, 1919cc2dc46cSBarry Smith MatGetValues_MPIBAIJ, 1920cc2dc46cSBarry Smith 0, 192197304618SKris Buschelman /*45*/ MatPrintHelp_MPIBAIJ, 1922cc2dc46cSBarry Smith MatScale_MPIBAIJ, 1923cc2dc46cSBarry Smith 0, 1924cc2dc46cSBarry Smith 0, 1925cc2dc46cSBarry Smith 0, 192697304618SKris Buschelman /*50*/ MatGetBlockSize_MPIBAIJ, 1927cc2dc46cSBarry Smith 0, 1928cc2dc46cSBarry Smith 0, 1929cc2dc46cSBarry Smith 0, 1930cc2dc46cSBarry Smith 0, 193197304618SKris Buschelman /*55*/ 0, 1932cc2dc46cSBarry Smith 0, 1933cc2dc46cSBarry Smith MatSetUnfactored_MPIBAIJ, 1934cc2dc46cSBarry Smith 0, 1935cc2dc46cSBarry Smith MatSetValuesBlocked_MPIBAIJ, 193697304618SKris Buschelman /*60*/ 0, 1937f14a1c24SBarry Smith MatDestroy_MPIBAIJ, 1938f14a1c24SBarry Smith MatView_MPIBAIJ, 19398a124369SBarry Smith MatGetPetscMaps_Petsc, 19407843d17aSBarry Smith 0, 194197304618SKris Buschelman /*65*/ 0, 19427843d17aSBarry Smith 0, 19437843d17aSBarry Smith 0, 19447843d17aSBarry Smith 0, 19457843d17aSBarry Smith 0, 194697304618SKris Buschelman /*70*/ MatGetRowMax_MPIBAIJ, 19477843d17aSBarry Smith 0, 194897304618SKris Buschelman 0, 194997304618SKris Buschelman 0, 195097304618SKris Buschelman 0, 195197304618SKris Buschelman /*75*/ 0, 195297304618SKris Buschelman 0, 195397304618SKris Buschelman 0, 195497304618SKris Buschelman 0, 195597304618SKris Buschelman 0, 195697304618SKris Buschelman /*80*/ 0, 195797304618SKris Buschelman 0, 195897304618SKris Buschelman 0, 195997304618SKris Buschelman 0, 196097304618SKris Buschelman /*85*/ MatLoad_MPIBAIJ 196197304618SKris Buschelman }; 196279bdfe76SSatish Balay 19635ef9f2a5SBarry Smith 1964e18c124aSSatish Balay EXTERN_C_BEGIN 19654a2ae208SSatish Balay #undef __FUNCT__ 19664a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonalBlock_MPIBAIJ" 19675ef9f2a5SBarry Smith int MatGetDiagonalBlock_MPIBAIJ(Mat A,PetscTruth *iscopy,MatReuse reuse,Mat *a) 19685ef9f2a5SBarry Smith { 19695ef9f2a5SBarry Smith PetscFunctionBegin; 19705ef9f2a5SBarry Smith *a = ((Mat_MPIBAIJ *)A->data)->A; 19715ef9f2a5SBarry Smith *iscopy = PETSC_FALSE; 19725ef9f2a5SBarry Smith PetscFunctionReturn(0); 19735ef9f2a5SBarry Smith } 1974e18c124aSSatish Balay EXTERN_C_END 197579bdfe76SSatish Balay 1976273d9f13SBarry Smith EXTERN_C_BEGIN 1977d94109b8SHong Zhang extern int MatConvert_MPIBAIJ_MPISBAIJ(Mat,const MatType,Mat*); 1978d94109b8SHong Zhang EXTERN_C_END 1979d94109b8SHong Zhang 1980d94109b8SHong Zhang EXTERN_C_BEGIN 19814a2ae208SSatish Balay #undef __FUNCT__ 1982a23d5eceSKris Buschelman #define __FUNCT__ "MatMPIBAIJSetPreallocation_MPIBAIJ" 1983a23d5eceSKris Buschelman int MatMPIBAIJSetPreallocation_MPIBAIJ(Mat B,int bs,int d_nz,int *d_nnz,int o_nz,int *o_nnz) 1984a23d5eceSKris Buschelman { 1985a23d5eceSKris Buschelman Mat_MPIBAIJ *b; 1986a23d5eceSKris Buschelman int ierr,i; 1987a23d5eceSKris Buschelman 1988a23d5eceSKris Buschelman PetscFunctionBegin; 1989a23d5eceSKris Buschelman B->preallocated = PETSC_TRUE; 1990a23d5eceSKris Buschelman ierr = PetscOptionsGetInt(PETSC_NULL,"-mat_block_size",&bs,PETSC_NULL);CHKERRQ(ierr); 1991a23d5eceSKris Buschelman 1992a23d5eceSKris Buschelman if (bs < 1) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Invalid block size specified, must be positive"); 1993a23d5eceSKris Buschelman if (d_nz == PETSC_DEFAULT || d_nz == PETSC_DECIDE) d_nz = 5; 1994a23d5eceSKris Buschelman if (o_nz == PETSC_DEFAULT || o_nz == PETSC_DECIDE) o_nz = 2; 1995a23d5eceSKris Buschelman if (d_nz < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"d_nz cannot be less than 0: value %d",d_nz); 1996a23d5eceSKris Buschelman if (o_nz < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"o_nz cannot be less than 0: value %d",o_nz); 1997a23d5eceSKris Buschelman if (d_nnz) { 1998a23d5eceSKris Buschelman for (i=0; i<B->m/bs; i++) { 1999a23d5eceSKris Buschelman if (d_nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"d_nnz cannot be less than -1: local row %d value %d",i,d_nnz[i]); 2000a23d5eceSKris Buschelman } 2001a23d5eceSKris Buschelman } 2002a23d5eceSKris Buschelman if (o_nnz) { 2003a23d5eceSKris Buschelman for (i=0; i<B->m/bs; i++) { 2004a23d5eceSKris Buschelman if (o_nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"o_nnz cannot be less than -1: local row %d value %d",i,o_nnz[i]); 2005a23d5eceSKris Buschelman } 2006a23d5eceSKris Buschelman } 2007a23d5eceSKris Buschelman 2008a23d5eceSKris Buschelman ierr = PetscSplitOwnershipBlock(B->comm,bs,&B->m,&B->M);CHKERRQ(ierr); 2009a23d5eceSKris Buschelman ierr = PetscSplitOwnershipBlock(B->comm,bs,&B->n,&B->N);CHKERRQ(ierr); 2010a23d5eceSKris Buschelman ierr = PetscMapCreateMPI(B->comm,B->m,B->M,&B->rmap);CHKERRQ(ierr); 2011a23d5eceSKris Buschelman ierr = PetscMapCreateMPI(B->comm,B->n,B->N,&B->cmap);CHKERRQ(ierr); 2012a23d5eceSKris Buschelman 2013a23d5eceSKris Buschelman b = (Mat_MPIBAIJ*)B->data; 2014a23d5eceSKris Buschelman b->bs = bs; 2015a23d5eceSKris Buschelman b->bs2 = bs*bs; 2016a23d5eceSKris Buschelman b->mbs = B->m/bs; 2017a23d5eceSKris Buschelman b->nbs = B->n/bs; 2018a23d5eceSKris Buschelman b->Mbs = B->M/bs; 2019a23d5eceSKris Buschelman b->Nbs = B->N/bs; 2020a23d5eceSKris Buschelman 2021a23d5eceSKris Buschelman ierr = MPI_Allgather(&b->mbs,1,MPI_INT,b->rowners+1,1,MPI_INT,B->comm);CHKERRQ(ierr); 2022a23d5eceSKris Buschelman b->rowners[0] = 0; 2023a23d5eceSKris Buschelman for (i=2; i<=b->size; i++) { 2024a23d5eceSKris Buschelman b->rowners[i] += b->rowners[i-1]; 2025a23d5eceSKris Buschelman } 2026a23d5eceSKris Buschelman b->rstart = b->rowners[b->rank]; 2027a23d5eceSKris Buschelman b->rend = b->rowners[b->rank+1]; 2028a23d5eceSKris Buschelman 2029a23d5eceSKris Buschelman ierr = MPI_Allgather(&b->nbs,1,MPI_INT,b->cowners+1,1,MPI_INT,B->comm);CHKERRQ(ierr); 2030a23d5eceSKris Buschelman b->cowners[0] = 0; 2031a23d5eceSKris Buschelman for (i=2; i<=b->size; i++) { 2032a23d5eceSKris Buschelman b->cowners[i] += b->cowners[i-1]; 2033a23d5eceSKris Buschelman } 2034a23d5eceSKris Buschelman b->cstart = b->cowners[b->rank]; 2035a23d5eceSKris Buschelman b->cend = b->cowners[b->rank+1]; 2036a23d5eceSKris Buschelman 2037a23d5eceSKris Buschelman for (i=0; i<=b->size; i++) { 2038a23d5eceSKris Buschelman b->rowners_bs[i] = b->rowners[i]*bs; 2039a23d5eceSKris Buschelman } 2040a23d5eceSKris Buschelman b->rstart_bs = b->rstart*bs; 2041a23d5eceSKris Buschelman b->rend_bs = b->rend*bs; 2042a23d5eceSKris Buschelman b->cstart_bs = b->cstart*bs; 2043a23d5eceSKris Buschelman b->cend_bs = b->cend*bs; 2044a23d5eceSKris Buschelman 20459c097c71SKris Buschelman ierr = MatCreate(PETSC_COMM_SELF,B->m,B->n,B->m,B->n,&b->A);CHKERRQ(ierr); 20469c097c71SKris Buschelman ierr = MatSetType(b->A,MATSEQBAIJ);CHKERRQ(ierr); 2047c60e587dSKris Buschelman ierr = MatSeqBAIJSetPreallocation(b->A,bs,d_nz,d_nnz);CHKERRQ(ierr); 20489c097c71SKris Buschelman PetscLogObjectParent(B,b->A); 20499c097c71SKris Buschelman ierr = MatCreate(PETSC_COMM_SELF,B->m,B->N,B->m,B->N,&b->B);CHKERRQ(ierr); 20509c097c71SKris Buschelman ierr = MatSetType(b->B,MATSEQBAIJ);CHKERRQ(ierr); 2051c60e587dSKris Buschelman ierr = MatSeqBAIJSetPreallocation(b->B,bs,o_nz,o_nnz);CHKERRQ(ierr); 20529c097c71SKris Buschelman PetscLogObjectParent(B,b->B); 2053c60e587dSKris Buschelman 2054a23d5eceSKris Buschelman ierr = MatStashCreate_Private(B->comm,bs,&B->bstash);CHKERRQ(ierr); 2055a23d5eceSKris Buschelman 2056a23d5eceSKris Buschelman PetscFunctionReturn(0); 2057a23d5eceSKris Buschelman } 2058a23d5eceSKris Buschelman EXTERN_C_END 2059a23d5eceSKris Buschelman 2060a23d5eceSKris Buschelman EXTERN_C_BEGIN 206192b32695SKris Buschelman EXTERN int MatDiagonalScaleLocal_MPIBAIJ(Mat,Vec); 20625bf65638SKris Buschelman EXTERN int MatSetHashTableFactor_MPIBAIJ(Mat,PetscReal); 206392b32695SKris Buschelman EXTERN_C_END 20645bf65638SKris Buschelman 20650bad9183SKris Buschelman /*MC 2066fafad747SKris Buschelman MATMPIBAIJ - MATMPIBAIJ = "mpibaij" - A matrix type to be used for distributed block sparse matrices. 20670bad9183SKris Buschelman 20680bad9183SKris Buschelman Options Database Keys: 20690bad9183SKris Buschelman . -mat_type mpibaij - sets the matrix type to "mpibaij" during a call to MatSetFromOptions() 20700bad9183SKris Buschelman 20710bad9183SKris Buschelman Level: beginner 20720bad9183SKris Buschelman 20730bad9183SKris Buschelman .seealso: MatCreateMPIBAIJ 20740bad9183SKris Buschelman M*/ 20750bad9183SKris Buschelman 207692b32695SKris Buschelman EXTERN_C_BEGIN 2077a23d5eceSKris Buschelman #undef __FUNCT__ 20784a2ae208SSatish Balay #define __FUNCT__ "MatCreate_MPIBAIJ" 2079273d9f13SBarry Smith int MatCreate_MPIBAIJ(Mat B) 2080273d9f13SBarry Smith { 2081273d9f13SBarry Smith Mat_MPIBAIJ *b; 2082cfce73b9SSatish Balay int ierr; 2083273d9f13SBarry Smith PetscTruth flg; 2084273d9f13SBarry Smith 2085273d9f13SBarry Smith PetscFunctionBegin; 208682502324SSatish Balay ierr = PetscNew(Mat_MPIBAIJ,&b);CHKERRQ(ierr); 208782502324SSatish Balay B->data = (void*)b; 208882502324SSatish Balay 2089273d9f13SBarry Smith ierr = PetscMemzero(b,sizeof(Mat_MPIBAIJ));CHKERRQ(ierr); 2090273d9f13SBarry Smith ierr = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr); 2091273d9f13SBarry Smith B->mapping = 0; 2092273d9f13SBarry Smith B->factor = 0; 2093273d9f13SBarry Smith B->assembled = PETSC_FALSE; 2094273d9f13SBarry Smith 2095273d9f13SBarry Smith B->insertmode = NOT_SET_VALUES; 2096273d9f13SBarry Smith ierr = MPI_Comm_rank(B->comm,&b->rank);CHKERRQ(ierr); 2097273d9f13SBarry Smith ierr = MPI_Comm_size(B->comm,&b->size);CHKERRQ(ierr); 2098273d9f13SBarry Smith 2099273d9f13SBarry Smith /* build local table of row and column ownerships */ 210082502324SSatish Balay ierr = PetscMalloc(3*(b->size+2)*sizeof(int),&b->rowners);CHKERRQ(ierr); 2101b0a32e0cSBarry Smith PetscLogObjectMemory(B,3*(b->size+2)*sizeof(int)+sizeof(struct _p_Mat)+sizeof(Mat_MPIBAIJ)); 2102273d9f13SBarry Smith b->cowners = b->rowners + b->size + 2; 2103273d9f13SBarry Smith b->rowners_bs = b->cowners + b->size + 2; 2104273d9f13SBarry Smith 2105273d9f13SBarry Smith /* build cache for off array entries formed */ 2106273d9f13SBarry Smith ierr = MatStashCreate_Private(B->comm,1,&B->stash);CHKERRQ(ierr); 2107273d9f13SBarry Smith b->donotstash = PETSC_FALSE; 2108273d9f13SBarry Smith b->colmap = PETSC_NULL; 2109273d9f13SBarry Smith b->garray = PETSC_NULL; 2110273d9f13SBarry Smith b->roworiented = PETSC_TRUE; 2111273d9f13SBarry Smith 2112cfce73b9SSatish Balay #if defined(PETSC_USE_MAT_SINGLE) 2113273d9f13SBarry Smith /* stuff for MatSetValues_XXX in single precision */ 211464a35ccbSBarry Smith b->setvalueslen = 0; 2115273d9f13SBarry Smith b->setvaluescopy = PETSC_NULL; 2116273d9f13SBarry Smith #endif 2117273d9f13SBarry Smith 2118273d9f13SBarry Smith /* stuff used in block assembly */ 2119273d9f13SBarry Smith b->barray = 0; 2120273d9f13SBarry Smith 2121273d9f13SBarry Smith /* stuff used for matrix vector multiply */ 2122273d9f13SBarry Smith b->lvec = 0; 2123273d9f13SBarry Smith b->Mvctx = 0; 2124273d9f13SBarry Smith 2125273d9f13SBarry Smith /* stuff for MatGetRow() */ 2126273d9f13SBarry Smith b->rowindices = 0; 2127273d9f13SBarry Smith b->rowvalues = 0; 2128273d9f13SBarry Smith b->getrowactive = PETSC_FALSE; 2129273d9f13SBarry Smith 2130273d9f13SBarry Smith /* hash table stuff */ 2131273d9f13SBarry Smith b->ht = 0; 2132273d9f13SBarry Smith b->hd = 0; 2133273d9f13SBarry Smith b->ht_size = 0; 2134273d9f13SBarry Smith b->ht_flag = PETSC_FALSE; 2135273d9f13SBarry Smith b->ht_fact = 0; 2136273d9f13SBarry Smith b->ht_total_ct = 0; 2137273d9f13SBarry Smith b->ht_insert_ct = 0; 2138273d9f13SBarry Smith 2139b0a32e0cSBarry Smith ierr = PetscOptionsHasName(PETSC_NULL,"-mat_use_hash_table",&flg);CHKERRQ(ierr); 2140273d9f13SBarry Smith if (flg) { 2141f6275e2eSBarry Smith PetscReal fact = 1.39; 2142273d9f13SBarry Smith ierr = MatSetOption(B,MAT_USE_HASH_TABLE);CHKERRQ(ierr); 214387828ca2SBarry Smith ierr = PetscOptionsGetReal(PETSC_NULL,"-mat_use_hash_table",&fact,PETSC_NULL);CHKERRQ(ierr); 2144273d9f13SBarry Smith if (fact <= 1.0) fact = 1.39; 2145273d9f13SBarry Smith ierr = MatMPIBAIJSetHashTableFactor(B,fact);CHKERRQ(ierr); 2146b0a32e0cSBarry Smith PetscLogInfo(0,"MatCreateMPIBAIJ:Hash table Factor used %5.2f\n",fact); 2147273d9f13SBarry Smith } 2148273d9f13SBarry Smith ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatStoreValues_C", 2149273d9f13SBarry Smith "MatStoreValues_MPIBAIJ", 2150273d9f13SBarry Smith MatStoreValues_MPIBAIJ);CHKERRQ(ierr); 2151273d9f13SBarry Smith ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatRetrieveValues_C", 2152273d9f13SBarry Smith "MatRetrieveValues_MPIBAIJ", 2153273d9f13SBarry Smith MatRetrieveValues_MPIBAIJ);CHKERRQ(ierr); 2154273d9f13SBarry Smith ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetDiagonalBlock_C", 2155273d9f13SBarry Smith "MatGetDiagonalBlock_MPIBAIJ", 2156273d9f13SBarry Smith MatGetDiagonalBlock_MPIBAIJ);CHKERRQ(ierr); 2157a23d5eceSKris Buschelman ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatMPIBAIJSetPreallocation_C", 2158a23d5eceSKris Buschelman "MatMPIBAIJSetPreallocation_MPIBAIJ", 2159a23d5eceSKris Buschelman MatMPIBAIJSetPreallocation_MPIBAIJ);CHKERRQ(ierr); 216092b32695SKris Buschelman ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatDiagonalScaleLocal_C", 216192b32695SKris Buschelman "MatDiagonalScaleLocal_MPIBAIJ", 216292b32695SKris Buschelman MatDiagonalScaleLocal_MPIBAIJ);CHKERRQ(ierr); 21635bf65638SKris Buschelman ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatSetHashTableFactor_C", 21645bf65638SKris Buschelman "MatSetHashTableFactor_MPIBAIJ", 21655bf65638SKris Buschelman MatSetHashTableFactor_MPIBAIJ);CHKERRQ(ierr); 2166273d9f13SBarry Smith PetscFunctionReturn(0); 2167273d9f13SBarry Smith } 2168273d9f13SBarry Smith EXTERN_C_END 2169273d9f13SBarry Smith 2170209238afSKris Buschelman /*MC 2171002d173eSKris Buschelman MATBAIJ - MATBAIJ = "baij" - A matrix type to be used for block sparse matrices. 2172209238afSKris Buschelman 2173209238afSKris Buschelman This matrix type is identical to MATSEQBAIJ when constructed with a single process communicator, 2174209238afSKris Buschelman and MATMPIBAIJ otherwise. 2175209238afSKris Buschelman 2176209238afSKris Buschelman Options Database Keys: 2177209238afSKris Buschelman . -mat_type baij - sets the matrix type to "baij" during a call to MatSetFromOptions() 2178209238afSKris Buschelman 2179209238afSKris Buschelman Level: beginner 2180209238afSKris Buschelman 2181209238afSKris Buschelman .seealso: MatCreateMPIBAIJ,MATSEQBAIJ,MATMPIBAIJ 2182209238afSKris Buschelman M*/ 2183209238afSKris Buschelman 2184209238afSKris Buschelman EXTERN_C_BEGIN 2185209238afSKris Buschelman #undef __FUNCT__ 2186209238afSKris Buschelman #define __FUNCT__ "MatCreate_BAIJ" 2187209238afSKris Buschelman int MatCreate_BAIJ(Mat A) { 2188209238afSKris Buschelman int ierr,size; 2189209238afSKris Buschelman 2190209238afSKris Buschelman PetscFunctionBegin; 2191209238afSKris Buschelman ierr = PetscObjectChangeTypeName((PetscObject)A,MATBAIJ);CHKERRQ(ierr); 2192209238afSKris Buschelman ierr = MPI_Comm_size(A->comm,&size);CHKERRQ(ierr); 2193209238afSKris Buschelman if (size == 1) { 2194209238afSKris Buschelman ierr = MatSetType(A,MATSEQBAIJ);CHKERRQ(ierr); 2195209238afSKris Buschelman } else { 2196209238afSKris Buschelman ierr = MatSetType(A,MATMPIBAIJ);CHKERRQ(ierr); 2197209238afSKris Buschelman } 2198209238afSKris Buschelman PetscFunctionReturn(0); 2199209238afSKris Buschelman } 2200209238afSKris Buschelman EXTERN_C_END 2201209238afSKris Buschelman 22024a2ae208SSatish Balay #undef __FUNCT__ 22034a2ae208SSatish Balay #define __FUNCT__ "MatMPIBAIJSetPreallocation" 2204273d9f13SBarry Smith /*@C 2205273d9f13SBarry Smith MatMPIBAIJSetPreallocation - Creates a sparse parallel matrix in block AIJ format 2206273d9f13SBarry Smith (block compressed row). For good matrix assembly performance 2207273d9f13SBarry Smith the user should preallocate the matrix storage by setting the parameters 2208273d9f13SBarry Smith d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 2209273d9f13SBarry Smith performance can be increased by more than a factor of 50. 2210273d9f13SBarry Smith 2211273d9f13SBarry Smith Collective on Mat 2212273d9f13SBarry Smith 2213273d9f13SBarry Smith Input Parameters: 2214273d9f13SBarry Smith + A - the matrix 2215273d9f13SBarry Smith . bs - size of blockk 2216273d9f13SBarry Smith . d_nz - number of block nonzeros per block row in diagonal portion of local 2217273d9f13SBarry Smith submatrix (same for all local rows) 2218273d9f13SBarry Smith . d_nnz - array containing the number of block nonzeros in the various block rows 2219273d9f13SBarry Smith of the in diagonal portion of the local (possibly different for each block 2220273d9f13SBarry Smith row) or PETSC_NULL. You must leave room for the diagonal entry even if it is zero. 2221273d9f13SBarry Smith . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 2222273d9f13SBarry Smith submatrix (same for all local rows). 2223273d9f13SBarry Smith - o_nnz - array containing the number of nonzeros in the various block rows of the 2224273d9f13SBarry Smith off-diagonal portion of the local submatrix (possibly different for 2225273d9f13SBarry Smith each block row) or PETSC_NULL. 2226273d9f13SBarry Smith 2227273d9f13SBarry Smith Output Parameter: 2228273d9f13SBarry Smith 2229273d9f13SBarry Smith 2230273d9f13SBarry Smith Options Database Keys: 2231273d9f13SBarry Smith . -mat_no_unroll - uses code that does not unroll the loops in the 2232273d9f13SBarry Smith block calculations (much slower) 2233273d9f13SBarry Smith . -mat_block_size - size of the blocks to use 2234273d9f13SBarry Smith 2235273d9f13SBarry Smith Notes: 2236273d9f13SBarry Smith If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one processor 2237273d9f13SBarry Smith than it must be used on all processors that share the object for that argument. 2238273d9f13SBarry Smith 2239273d9f13SBarry Smith Storage Information: 2240273d9f13SBarry Smith For a square global matrix we define each processor's diagonal portion 2241273d9f13SBarry Smith to be its local rows and the corresponding columns (a square submatrix); 2242273d9f13SBarry Smith each processor's off-diagonal portion encompasses the remainder of the 2243273d9f13SBarry Smith local matrix (a rectangular submatrix). 2244273d9f13SBarry Smith 2245273d9f13SBarry Smith The user can specify preallocated storage for the diagonal part of 2246273d9f13SBarry Smith the local submatrix with either d_nz or d_nnz (not both). Set 2247273d9f13SBarry Smith d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic 2248273d9f13SBarry Smith memory allocation. Likewise, specify preallocated storage for the 2249273d9f13SBarry Smith off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 2250273d9f13SBarry Smith 2251273d9f13SBarry Smith Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 2252273d9f13SBarry Smith the figure below we depict these three local rows and all columns (0-11). 2253273d9f13SBarry Smith 2254273d9f13SBarry Smith .vb 2255273d9f13SBarry Smith 0 1 2 3 4 5 6 7 8 9 10 11 2256273d9f13SBarry Smith ------------------- 2257273d9f13SBarry Smith row 3 | o o o d d d o o o o o o 2258273d9f13SBarry Smith row 4 | o o o d d d o o o o o o 2259273d9f13SBarry Smith row 5 | o o o d d d o o o o o o 2260273d9f13SBarry Smith ------------------- 2261273d9f13SBarry Smith .ve 2262273d9f13SBarry Smith 2263273d9f13SBarry Smith Thus, any entries in the d locations are stored in the d (diagonal) 2264273d9f13SBarry Smith submatrix, and any entries in the o locations are stored in the 2265273d9f13SBarry Smith o (off-diagonal) submatrix. Note that the d and the o submatrices are 2266273d9f13SBarry Smith stored simply in the MATSEQBAIJ format for compressed row storage. 2267273d9f13SBarry Smith 2268273d9f13SBarry Smith Now d_nz should indicate the number of block nonzeros per row in the d matrix, 2269273d9f13SBarry Smith and o_nz should indicate the number of block nonzeros per row in the o matrix. 2270273d9f13SBarry Smith In general, for PDE problems in which most nonzeros are near the diagonal, 2271273d9f13SBarry Smith one expects d_nz >> o_nz. For large problems you MUST preallocate memory 2272273d9f13SBarry Smith or you will get TERRIBLE performance; see the users' manual chapter on 2273273d9f13SBarry Smith matrices. 2274273d9f13SBarry Smith 2275273d9f13SBarry Smith Level: intermediate 2276273d9f13SBarry Smith 2277273d9f13SBarry Smith .keywords: matrix, block, aij, compressed row, sparse, parallel 2278273d9f13SBarry Smith 2279273d9f13SBarry Smith .seealso: MatCreate(), MatCreateSeqBAIJ(), MatSetValues(), MatCreateMPIBAIJ() 2280273d9f13SBarry Smith @*/ 2281ca01db9bSBarry Smith int MatMPIBAIJSetPreallocation(Mat B,int bs,int d_nz,const int d_nnz[],int o_nz,const int o_nnz[]) 2282273d9f13SBarry Smith { 2283ca01db9bSBarry Smith int ierr,(*f)(Mat,int,int,const int[],int,const int[]); 2284273d9f13SBarry Smith 2285273d9f13SBarry Smith PetscFunctionBegin; 2286a23d5eceSKris Buschelman ierr = PetscObjectQueryFunction((PetscObject)B,"MatMPIBAIJSetPreallocation_C",(void (**)(void))&f);CHKERRQ(ierr); 2287a23d5eceSKris Buschelman if (f) { 2288a23d5eceSKris Buschelman ierr = (*f)(B,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr); 2289273d9f13SBarry Smith } 2290273d9f13SBarry Smith PetscFunctionReturn(0); 2291273d9f13SBarry Smith } 2292273d9f13SBarry Smith 22934a2ae208SSatish Balay #undef __FUNCT__ 22944a2ae208SSatish Balay #define __FUNCT__ "MatCreateMPIBAIJ" 229579bdfe76SSatish Balay /*@C 229679bdfe76SSatish Balay MatCreateMPIBAIJ - Creates a sparse parallel matrix in block AIJ format 229779bdfe76SSatish Balay (block compressed row). For good matrix assembly performance 229879bdfe76SSatish Balay the user should preallocate the matrix storage by setting the parameters 229979bdfe76SSatish Balay d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 230079bdfe76SSatish Balay performance can be increased by more than a factor of 50. 230179bdfe76SSatish Balay 2302db81eaa0SLois Curfman McInnes Collective on MPI_Comm 2303db81eaa0SLois Curfman McInnes 230479bdfe76SSatish Balay Input Parameters: 2305db81eaa0SLois Curfman McInnes + comm - MPI communicator 230679bdfe76SSatish Balay . bs - size of blockk 230779bdfe76SSatish Balay . m - number of local rows (or PETSC_DECIDE to have calculated if M is given) 230892e8d321SLois Curfman McInnes This value should be the same as the local size used in creating the 230992e8d321SLois Curfman McInnes y vector for the matrix-vector product y = Ax. 231092e8d321SLois Curfman McInnes . n - number of local columns (or PETSC_DECIDE to have calculated if N is given) 231192e8d321SLois Curfman McInnes This value should be the same as the local size used in creating the 231292e8d321SLois Curfman McInnes x vector for the matrix-vector product y = Ax. 2313be79a94dSBarry Smith . M - number of global rows (or PETSC_DETERMINE to have calculated if m is given) 2314be79a94dSBarry Smith . N - number of global columns (or PETSC_DETERMINE to have calculated if n is given) 231547a75d0bSBarry Smith . d_nz - number of nonzero blocks per block row in diagonal portion of local 231679bdfe76SSatish Balay submatrix (same for all local rows) 231747a75d0bSBarry Smith . d_nnz - array containing the number of nonzero blocks in the various block rows 231892e8d321SLois Curfman McInnes of the in diagonal portion of the local (possibly different for each block 2319db81eaa0SLois Curfman McInnes row) or PETSC_NULL. You must leave room for the diagonal entry even if it is zero. 232047a75d0bSBarry Smith . o_nz - number of nonzero blocks per block row in the off-diagonal portion of local 232179bdfe76SSatish Balay submatrix (same for all local rows). 232247a75d0bSBarry Smith - o_nnz - array containing the number of nonzero blocks in the various block rows of the 232392e8d321SLois Curfman McInnes off-diagonal portion of the local submatrix (possibly different for 232492e8d321SLois Curfman McInnes each block row) or PETSC_NULL. 232579bdfe76SSatish Balay 232679bdfe76SSatish Balay Output Parameter: 232779bdfe76SSatish Balay . A - the matrix 232879bdfe76SSatish Balay 2329db81eaa0SLois Curfman McInnes Options Database Keys: 2330db81eaa0SLois Curfman McInnes . -mat_no_unroll - uses code that does not unroll the loops in the 2331db81eaa0SLois Curfman McInnes block calculations (much slower) 2332db81eaa0SLois Curfman McInnes . -mat_block_size - size of the blocks to use 23333ffaccefSLois Curfman McInnes 2334b259b22eSLois Curfman McInnes Notes: 233547a75d0bSBarry Smith A nonzero block is any block that as 1 or more nonzeros in it 233647a75d0bSBarry Smith 233779bdfe76SSatish Balay The user MUST specify either the local or global matrix dimensions 233879bdfe76SSatish Balay (possibly both). 233979bdfe76SSatish Balay 2340be79a94dSBarry Smith If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one processor 2341be79a94dSBarry Smith than it must be used on all processors that share the object for that argument. 2342be79a94dSBarry Smith 234379bdfe76SSatish Balay Storage Information: 234479bdfe76SSatish Balay For a square global matrix we define each processor's diagonal portion 234579bdfe76SSatish Balay to be its local rows and the corresponding columns (a square submatrix); 234679bdfe76SSatish Balay each processor's off-diagonal portion encompasses the remainder of the 234779bdfe76SSatish Balay local matrix (a rectangular submatrix). 234879bdfe76SSatish Balay 234979bdfe76SSatish Balay The user can specify preallocated storage for the diagonal part of 235079bdfe76SSatish Balay the local submatrix with either d_nz or d_nnz (not both). Set 235179bdfe76SSatish Balay d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic 235279bdfe76SSatish Balay memory allocation. Likewise, specify preallocated storage for the 235379bdfe76SSatish Balay off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 235479bdfe76SSatish Balay 235579bdfe76SSatish Balay Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 235679bdfe76SSatish Balay the figure below we depict these three local rows and all columns (0-11). 235779bdfe76SSatish Balay 2358db81eaa0SLois Curfman McInnes .vb 2359db81eaa0SLois Curfman McInnes 0 1 2 3 4 5 6 7 8 9 10 11 2360db81eaa0SLois Curfman McInnes ------------------- 2361db81eaa0SLois Curfman McInnes row 3 | o o o d d d o o o o o o 2362db81eaa0SLois Curfman McInnes row 4 | o o o d d d o o o o o o 2363db81eaa0SLois Curfman McInnes row 5 | o o o d d d o o o o o o 2364db81eaa0SLois Curfman McInnes ------------------- 2365db81eaa0SLois Curfman McInnes .ve 236679bdfe76SSatish Balay 236779bdfe76SSatish Balay Thus, any entries in the d locations are stored in the d (diagonal) 236879bdfe76SSatish Balay submatrix, and any entries in the o locations are stored in the 236979bdfe76SSatish Balay o (off-diagonal) submatrix. Note that the d and the o submatrices are 237057b952d6SSatish Balay stored simply in the MATSEQBAIJ format for compressed row storage. 237179bdfe76SSatish Balay 2372d64ed03dSBarry Smith Now d_nz should indicate the number of block nonzeros per row in the d matrix, 2373d64ed03dSBarry Smith and o_nz should indicate the number of block nonzeros per row in the o matrix. 237479bdfe76SSatish Balay In general, for PDE problems in which most nonzeros are near the diagonal, 237592e8d321SLois Curfman McInnes one expects d_nz >> o_nz. For large problems you MUST preallocate memory 237692e8d321SLois Curfman McInnes or you will get TERRIBLE performance; see the users' manual chapter on 23776da5968aSLois Curfman McInnes matrices. 237879bdfe76SSatish Balay 2379027ccd11SLois Curfman McInnes Level: intermediate 2380027ccd11SLois Curfman McInnes 238192e8d321SLois Curfman McInnes .keywords: matrix, block, aij, compressed row, sparse, parallel 238279bdfe76SSatish Balay 23833eda8832SBarry Smith .seealso: MatCreate(), MatCreateSeqBAIJ(), MatSetValues(), MatCreateMPIBAIJ() 238479bdfe76SSatish Balay @*/ 2385ca01db9bSBarry Smith int MatCreateMPIBAIJ(MPI_Comm comm,int bs,int m,int n,int M,int N,int d_nz,const int d_nnz[],int o_nz,const int o_nnz[],Mat *A) 238679bdfe76SSatish Balay { 2387273d9f13SBarry Smith int ierr,size; 238879bdfe76SSatish Balay 2389d64ed03dSBarry Smith PetscFunctionBegin; 2390273d9f13SBarry Smith ierr = MatCreate(comm,m,n,M,N,A);CHKERRQ(ierr); 2391d132466eSBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 2392273d9f13SBarry Smith if (size > 1) { 2393273d9f13SBarry Smith ierr = MatSetType(*A,MATMPIBAIJ);CHKERRQ(ierr); 2394273d9f13SBarry Smith ierr = MatMPIBAIJSetPreallocation(*A,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr); 2395273d9f13SBarry Smith } else { 2396273d9f13SBarry Smith ierr = MatSetType(*A,MATSEQBAIJ);CHKERRQ(ierr); 2397273d9f13SBarry Smith ierr = MatSeqBAIJSetPreallocation(*A,bs,d_nz,d_nnz);CHKERRQ(ierr); 23983914022bSBarry Smith } 23993a40ed3dSBarry Smith PetscFunctionReturn(0); 240079bdfe76SSatish Balay } 2401026e39d0SSatish Balay 24024a2ae208SSatish Balay #undef __FUNCT__ 24034a2ae208SSatish Balay #define __FUNCT__ "MatDuplicate_MPIBAIJ" 24042e8a6d31SBarry Smith static int MatDuplicate_MPIBAIJ(Mat matin,MatDuplicateOption cpvalues,Mat *newmat) 24050ac07820SSatish Balay { 24060ac07820SSatish Balay Mat mat; 24070ac07820SSatish Balay Mat_MPIBAIJ *a,*oldmat = (Mat_MPIBAIJ*)matin->data; 2408f1af5d2fSBarry Smith int ierr,len=0; 24090ac07820SSatish Balay 2410d64ed03dSBarry Smith PetscFunctionBegin; 24110ac07820SSatish Balay *newmat = 0; 2412273d9f13SBarry Smith ierr = MatCreate(matin->comm,matin->m,matin->n,matin->M,matin->N,&mat);CHKERRQ(ierr); 2413*be5d1d56SKris Buschelman ierr = MatSetType(mat,matin->type_name);CHKERRQ(ierr); 24147fff6886SHong Zhang 24154beb1cfeSHong Zhang ierr = PetscMemcpy(mat->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr); 24164beb1cfeSHong Zhang mat->factor = matin->factor; 2417273d9f13SBarry Smith mat->preallocated = PETSC_TRUE; 24180ac07820SSatish Balay mat->assembled = PETSC_TRUE; 24197fff6886SHong Zhang mat->insertmode = NOT_SET_VALUES; 24207fff6886SHong Zhang 2421273d9f13SBarry Smith a = (Mat_MPIBAIJ*)mat->data; 24220ac07820SSatish Balay a->bs = oldmat->bs; 24230ac07820SSatish Balay a->bs2 = oldmat->bs2; 24240ac07820SSatish Balay a->mbs = oldmat->mbs; 24250ac07820SSatish Balay a->nbs = oldmat->nbs; 24260ac07820SSatish Balay a->Mbs = oldmat->Mbs; 24270ac07820SSatish Balay a->Nbs = oldmat->Nbs; 24280ac07820SSatish Balay 24290ac07820SSatish Balay a->rstart = oldmat->rstart; 24300ac07820SSatish Balay a->rend = oldmat->rend; 24310ac07820SSatish Balay a->cstart = oldmat->cstart; 24320ac07820SSatish Balay a->cend = oldmat->cend; 24330ac07820SSatish Balay a->size = oldmat->size; 24340ac07820SSatish Balay a->rank = oldmat->rank; 2435aef5e8e0SSatish Balay a->donotstash = oldmat->donotstash; 2436aef5e8e0SSatish Balay a->roworiented = oldmat->roworiented; 2437aef5e8e0SSatish Balay a->rowindices = 0; 24380ac07820SSatish Balay a->rowvalues = 0; 24390ac07820SSatish Balay a->getrowactive = PETSC_FALSE; 244030793edcSSatish Balay a->barray = 0; 24413123a43fSSatish Balay a->rstart_bs = oldmat->rstart_bs; 24423123a43fSSatish Balay a->rend_bs = oldmat->rend_bs; 24433123a43fSSatish Balay a->cstart_bs = oldmat->cstart_bs; 24443123a43fSSatish Balay a->cend_bs = oldmat->cend_bs; 24450ac07820SSatish Balay 2446133cdb44SSatish Balay /* hash table stuff */ 2447133cdb44SSatish Balay a->ht = 0; 2448133cdb44SSatish Balay a->hd = 0; 2449133cdb44SSatish Balay a->ht_size = 0; 2450133cdb44SSatish Balay a->ht_flag = oldmat->ht_flag; 245125fdafccSSatish Balay a->ht_fact = oldmat->ht_fact; 2452133cdb44SSatish Balay a->ht_total_ct = 0; 2453133cdb44SSatish Balay a->ht_insert_ct = 0; 2454133cdb44SSatish Balay 2455549d3d68SSatish Balay ierr = PetscMemcpy(a->rowners,oldmat->rowners,3*(a->size+2)*sizeof(int));CHKERRQ(ierr); 24568798bf22SSatish Balay ierr = MatStashCreate_Private(matin->comm,1,&mat->stash);CHKERRQ(ierr); 24578798bf22SSatish Balay ierr = MatStashCreate_Private(matin->comm,oldmat->bs,&mat->bstash);CHKERRQ(ierr); 24580ac07820SSatish Balay if (oldmat->colmap) { 2459aa482453SBarry Smith #if defined (PETSC_USE_CTABLE) 24600f5bd95cSBarry Smith ierr = PetscTableCreateCopy(oldmat->colmap,&a->colmap);CHKERRQ(ierr); 246148e59246SSatish Balay #else 246282502324SSatish Balay ierr = PetscMalloc((a->Nbs)*sizeof(int),&a->colmap);CHKERRQ(ierr); 2463b0a32e0cSBarry Smith PetscLogObjectMemory(mat,(a->Nbs)*sizeof(int)); 2464549d3d68SSatish Balay ierr = PetscMemcpy(a->colmap,oldmat->colmap,(a->Nbs)*sizeof(int));CHKERRQ(ierr); 246548e59246SSatish Balay #endif 24660ac07820SSatish Balay } else a->colmap = 0; 24674beb1cfeSHong Zhang 24680ac07820SSatish Balay if (oldmat->garray && (len = ((Mat_SeqBAIJ*)(oldmat->B->data))->nbs)) { 246982502324SSatish Balay ierr = PetscMalloc(len*sizeof(int),&a->garray);CHKERRQ(ierr); 2470b0a32e0cSBarry Smith PetscLogObjectMemory(mat,len*sizeof(int)); 2471549d3d68SSatish Balay ierr = PetscMemcpy(a->garray,oldmat->garray,len*sizeof(int));CHKERRQ(ierr); 24720ac07820SSatish Balay } else a->garray = 0; 24730ac07820SSatish Balay 24740ac07820SSatish Balay ierr = VecDuplicate(oldmat->lvec,&a->lvec);CHKERRQ(ierr); 2475b0a32e0cSBarry Smith PetscLogObjectParent(mat,a->lvec); 24760ac07820SSatish Balay ierr = VecScatterCopy(oldmat->Mvctx,&a->Mvctx);CHKERRQ(ierr); 2477b0a32e0cSBarry Smith PetscLogObjectParent(mat,a->Mvctx); 24787fff6886SHong Zhang 24792e8a6d31SBarry Smith ierr = MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr); 2480b0a32e0cSBarry Smith PetscLogObjectParent(mat,a->A); 24812e8a6d31SBarry Smith ierr = MatDuplicate(oldmat->B,cpvalues,&a->B);CHKERRQ(ierr); 2482b0a32e0cSBarry Smith PetscLogObjectParent(mat,a->B); 2483b0a32e0cSBarry Smith ierr = PetscFListDuplicate(matin->qlist,&mat->qlist);CHKERRQ(ierr); 24840ac07820SSatish Balay *newmat = mat; 24854beb1cfeSHong Zhang 24863a40ed3dSBarry Smith PetscFunctionReturn(0); 24870ac07820SSatish Balay } 248857b952d6SSatish Balay 2489e090d566SSatish Balay #include "petscsys.h" 249057b952d6SSatish Balay 24914a2ae208SSatish Balay #undef __FUNCT__ 24924a2ae208SSatish Balay #define __FUNCT__ "MatLoad_MPIBAIJ" 24938e9aea5cSBarry Smith int MatLoad_MPIBAIJ(PetscViewer viewer,const MatType type,Mat *newmat) 249457b952d6SSatish Balay { 249557b952d6SSatish Balay Mat A; 249657b952d6SSatish Balay int i,nz,ierr,j,rstart,rend,fd; 249787828ca2SBarry Smith PetscScalar *vals,*buf; 249857b952d6SSatish Balay MPI_Comm comm = ((PetscObject)viewer)->comm; 249957b952d6SSatish Balay MPI_Status status; 2500cee3aa6bSSatish Balay int header[4],rank,size,*rowlengths = 0,M,N,m,*rowners,*browners,maxnz,*cols; 250157b952d6SSatish Balay int *locrowlens,*sndcounts = 0,*procsnz = 0,jj,*mycols,*ibuf; 2502f1af5d2fSBarry Smith int tag = ((PetscObject)viewer)->tag,bs=1,Mbs,mbs,extra_rows; 250357b952d6SSatish Balay int *dlens,*odlens,*mask,*masked1,*masked2,rowcount,odcount; 250457b952d6SSatish Balay int dcount,kmax,k,nzcount,tmp; 250557b952d6SSatish Balay 2506d64ed03dSBarry Smith PetscFunctionBegin; 2507b0a32e0cSBarry Smith ierr = PetscOptionsGetInt(PETSC_NULL,"-matload_block_size",&bs,PETSC_NULL);CHKERRQ(ierr); 250857b952d6SSatish Balay 2509d132466eSBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 2510d132466eSBarry Smith ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 251157b952d6SSatish Balay if (!rank) { 2512b0a32e0cSBarry Smith ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr); 2513e5638eb3SBarry Smith ierr = PetscBinaryRead(fd,(char *)header,4,PETSC_INT);CHKERRQ(ierr); 2514552e946dSBarry Smith if (header[0] != MAT_FILE_COOKIE) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"not matrix object"); 2515d64ed03dSBarry Smith if (header[3] < 0) { 251629bbc08cSBarry Smith SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"Matrix stored in special format, cannot load as MPIBAIJ"); 2517d64ed03dSBarry Smith } 25186c5fab8fSBarry Smith } 2519d64ed03dSBarry Smith 2520ca161407SBarry Smith ierr = MPI_Bcast(header+1,3,MPI_INT,0,comm);CHKERRQ(ierr); 252157b952d6SSatish Balay M = header[1]; N = header[2]; 252257b952d6SSatish Balay 252329bbc08cSBarry Smith if (M != N) SETERRQ(PETSC_ERR_SUP,"Can only do square matrices"); 252457b952d6SSatish Balay 252557b952d6SSatish Balay /* 252657b952d6SSatish Balay This code adds extra rows to make sure the number of rows is 252757b952d6SSatish Balay divisible by the blocksize 252857b952d6SSatish Balay */ 252957b952d6SSatish Balay Mbs = M/bs; 253057b952d6SSatish Balay extra_rows = bs - M + bs*(Mbs); 253157b952d6SSatish Balay if (extra_rows == bs) extra_rows = 0; 253257b952d6SSatish Balay else Mbs++; 253357b952d6SSatish Balay if (extra_rows &&!rank) { 2534b0a32e0cSBarry Smith PetscLogInfo(0,"MatLoad_MPIBAIJ:Padding loaded matrix to match blocksize\n"); 253557b952d6SSatish Balay } 2536537820f0SBarry Smith 253757b952d6SSatish Balay /* determine ownership of all rows */ 253857b952d6SSatish Balay mbs = Mbs/size + ((Mbs % size) > rank); 253957b952d6SSatish Balay m = mbs*bs; 2540b0a32e0cSBarry Smith ierr = PetscMalloc(2*(size+2)*sizeof(int),&rowners);CHKERRQ(ierr); 2541cee3aa6bSSatish Balay browners = rowners + size + 1; 2542ca161407SBarry Smith ierr = MPI_Allgather(&mbs,1,MPI_INT,rowners+1,1,MPI_INT,comm);CHKERRQ(ierr); 254357b952d6SSatish Balay rowners[0] = 0; 2544cee3aa6bSSatish Balay for (i=2; i<=size; i++) rowners[i] += rowners[i-1]; 2545cee3aa6bSSatish Balay for (i=0; i<=size; i++) browners[i] = rowners[i]*bs; 254657b952d6SSatish Balay rstart = rowners[rank]; 254757b952d6SSatish Balay rend = rowners[rank+1]; 254857b952d6SSatish Balay 254957b952d6SSatish Balay /* distribute row lengths to all processors */ 255082502324SSatish Balay ierr = PetscMalloc((rend-rstart)*bs*sizeof(int),&locrowlens);CHKERRQ(ierr); 255157b952d6SSatish Balay if (!rank) { 2552b0a32e0cSBarry Smith ierr = PetscMalloc((M+extra_rows)*sizeof(int),&rowlengths);CHKERRQ(ierr); 2553e5638eb3SBarry Smith ierr = PetscBinaryRead(fd,rowlengths,M,PETSC_INT);CHKERRQ(ierr); 255457b952d6SSatish Balay for (i=0; i<extra_rows; i++) rowlengths[M+i] = 1; 255582502324SSatish Balay ierr = PetscMalloc(size*sizeof(int),&sndcounts);CHKERRQ(ierr); 2556cee3aa6bSSatish Balay for (i=0; i<size; i++) sndcounts[i] = browners[i+1] - browners[i]; 2557ca161407SBarry Smith ierr = MPI_Scatterv(rowlengths,sndcounts,browners,MPI_INT,locrowlens,(rend-rstart)*bs,MPI_INT,0,comm);CHKERRQ(ierr); 2558606d414cSSatish Balay ierr = PetscFree(sndcounts);CHKERRQ(ierr); 2559d64ed03dSBarry Smith } else { 2560ca161407SBarry Smith ierr = MPI_Scatterv(0,0,0,MPI_INT,locrowlens,(rend-rstart)*bs,MPI_INT,0,comm);CHKERRQ(ierr); 256157b952d6SSatish Balay } 256257b952d6SSatish Balay 256357b952d6SSatish Balay if (!rank) { 256457b952d6SSatish Balay /* calculate the number of nonzeros on each processor */ 256582502324SSatish Balay ierr = PetscMalloc(size*sizeof(int),&procsnz);CHKERRQ(ierr); 2566549d3d68SSatish Balay ierr = PetscMemzero(procsnz,size*sizeof(int));CHKERRQ(ierr); 256757b952d6SSatish Balay for (i=0; i<size; i++) { 256857b952d6SSatish Balay for (j=rowners[i]*bs; j< rowners[i+1]*bs; j++) { 256957b952d6SSatish Balay procsnz[i] += rowlengths[j]; 257057b952d6SSatish Balay } 257157b952d6SSatish Balay } 2572606d414cSSatish Balay ierr = PetscFree(rowlengths);CHKERRQ(ierr); 257357b952d6SSatish Balay 257457b952d6SSatish Balay /* determine max buffer needed and allocate it */ 257557b952d6SSatish Balay maxnz = 0; 257657b952d6SSatish Balay for (i=0; i<size; i++) { 257757b952d6SSatish Balay maxnz = PetscMax(maxnz,procsnz[i]); 257857b952d6SSatish Balay } 257982502324SSatish Balay ierr = PetscMalloc(maxnz*sizeof(int),&cols);CHKERRQ(ierr); 258057b952d6SSatish Balay 258157b952d6SSatish Balay /* read in my part of the matrix column indices */ 258257b952d6SSatish Balay nz = procsnz[0]; 258382502324SSatish Balay ierr = PetscMalloc(nz*sizeof(int),&ibuf);CHKERRQ(ierr); 258457b952d6SSatish Balay mycols = ibuf; 2585cee3aa6bSSatish Balay if (size == 1) nz -= extra_rows; 2586e5638eb3SBarry Smith ierr = PetscBinaryRead(fd,mycols,nz,PETSC_INT);CHKERRQ(ierr); 2587cee3aa6bSSatish Balay if (size == 1) for (i=0; i< extra_rows; i++) { mycols[nz+i] = M+i; } 2588cee3aa6bSSatish Balay 258957b952d6SSatish Balay /* read in every ones (except the last) and ship off */ 259057b952d6SSatish Balay for (i=1; i<size-1; i++) { 259157b952d6SSatish Balay nz = procsnz[i]; 2592e5638eb3SBarry Smith ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr); 2593ca161407SBarry Smith ierr = MPI_Send(cols,nz,MPI_INT,i,tag,comm);CHKERRQ(ierr); 259457b952d6SSatish Balay } 259557b952d6SSatish Balay /* read in the stuff for the last proc */ 259657b952d6SSatish Balay if (size != 1) { 259757b952d6SSatish Balay nz = procsnz[size-1] - extra_rows; /* the extra rows are not on the disk */ 2598e5638eb3SBarry Smith ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr); 259957b952d6SSatish Balay for (i=0; i<extra_rows; i++) cols[nz+i] = M+i; 2600ca161407SBarry Smith ierr = MPI_Send(cols,nz+extra_rows,MPI_INT,size-1,tag,comm);CHKERRQ(ierr); 260157b952d6SSatish Balay } 2602606d414cSSatish Balay ierr = PetscFree(cols);CHKERRQ(ierr); 2603d64ed03dSBarry Smith } else { 260457b952d6SSatish Balay /* determine buffer space needed for message */ 260557b952d6SSatish Balay nz = 0; 260657b952d6SSatish Balay for (i=0; i<m; i++) { 260757b952d6SSatish Balay nz += locrowlens[i]; 260857b952d6SSatish Balay } 260982502324SSatish Balay ierr = PetscMalloc(nz*sizeof(int),&ibuf);CHKERRQ(ierr); 261057b952d6SSatish Balay mycols = ibuf; 261157b952d6SSatish Balay /* receive message of column indices*/ 2612ca161407SBarry Smith ierr = MPI_Recv(mycols,nz,MPI_INT,0,tag,comm,&status);CHKERRQ(ierr); 2613ca161407SBarry Smith ierr = MPI_Get_count(&status,MPI_INT,&maxnz);CHKERRQ(ierr); 261429bbc08cSBarry Smith if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 261557b952d6SSatish Balay } 261657b952d6SSatish Balay 261757b952d6SSatish Balay /* loop over local rows, determining number of off diagonal entries */ 261882502324SSatish Balay ierr = PetscMalloc(2*(rend-rstart+1)*sizeof(int),&dlens);CHKERRQ(ierr); 2619cee3aa6bSSatish Balay odlens = dlens + (rend-rstart); 262082502324SSatish Balay ierr = PetscMalloc(3*Mbs*sizeof(int),&mask);CHKERRQ(ierr); 2621549d3d68SSatish Balay ierr = PetscMemzero(mask,3*Mbs*sizeof(int));CHKERRQ(ierr); 262257b952d6SSatish Balay masked1 = mask + Mbs; 262357b952d6SSatish Balay masked2 = masked1 + Mbs; 262457b952d6SSatish Balay rowcount = 0; nzcount = 0; 262557b952d6SSatish Balay for (i=0; i<mbs; i++) { 262657b952d6SSatish Balay dcount = 0; 262757b952d6SSatish Balay odcount = 0; 262857b952d6SSatish Balay for (j=0; j<bs; j++) { 262957b952d6SSatish Balay kmax = locrowlens[rowcount]; 263057b952d6SSatish Balay for (k=0; k<kmax; k++) { 263157b952d6SSatish Balay tmp = mycols[nzcount++]/bs; 263257b952d6SSatish Balay if (!mask[tmp]) { 263357b952d6SSatish Balay mask[tmp] = 1; 263457b952d6SSatish Balay if (tmp < rstart || tmp >= rend) masked2[odcount++] = tmp; 263557b952d6SSatish Balay else masked1[dcount++] = tmp; 263657b952d6SSatish Balay } 263757b952d6SSatish Balay } 263857b952d6SSatish Balay rowcount++; 263957b952d6SSatish Balay } 2640cee3aa6bSSatish Balay 264157b952d6SSatish Balay dlens[i] = dcount; 264257b952d6SSatish Balay odlens[i] = odcount; 2643cee3aa6bSSatish Balay 264457b952d6SSatish Balay /* zero out the mask elements we set */ 264557b952d6SSatish Balay for (j=0; j<dcount; j++) mask[masked1[j]] = 0; 264657b952d6SSatish Balay for (j=0; j<odcount; j++) mask[masked2[j]] = 0; 264757b952d6SSatish Balay } 2648cee3aa6bSSatish Balay 264957b952d6SSatish Balay /* create our matrix */ 265078ae41b4SKris Buschelman ierr = MatCreate(comm,m,m,M+extra_rows,N+extra_rows,&A);CHKERRQ(ierr); 265178ae41b4SKris Buschelman ierr = MatSetType(A,type);CHKERRQ(ierr) 265278ae41b4SKris Buschelman ierr = MatMPIBAIJSetPreallocation(A,bs,0,dlens,0,odlens);CHKERRQ(ierr); 265378ae41b4SKris Buschelman 265478ae41b4SKris Buschelman /* Why doesn't this called using ierr = MatSetOption(A,MAT_COLUMNS_SORTED);CHKERRQ(ierr); */ 26556d4a8577SBarry Smith MatSetOption(A,MAT_COLUMNS_SORTED); 265657b952d6SSatish Balay 265757b952d6SSatish Balay if (!rank) { 265887828ca2SBarry Smith ierr = PetscMalloc(maxnz*sizeof(PetscScalar),&buf);CHKERRQ(ierr); 265957b952d6SSatish Balay /* read in my part of the matrix numerical values */ 266057b952d6SSatish Balay nz = procsnz[0]; 266157b952d6SSatish Balay vals = buf; 2662cee3aa6bSSatish Balay mycols = ibuf; 2663cee3aa6bSSatish Balay if (size == 1) nz -= extra_rows; 2664e5638eb3SBarry Smith ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 2665cee3aa6bSSatish Balay if (size == 1) for (i=0; i< extra_rows; i++) { vals[nz+i] = 1.0; } 2666537820f0SBarry Smith 266757b952d6SSatish Balay /* insert into matrix */ 266857b952d6SSatish Balay jj = rstart*bs; 266957b952d6SSatish Balay for (i=0; i<m; i++) { 2670b48991e4SBarry Smith ierr = MatSetValues(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr); 267157b952d6SSatish Balay mycols += locrowlens[i]; 267257b952d6SSatish Balay vals += locrowlens[i]; 267357b952d6SSatish Balay jj++; 267457b952d6SSatish Balay } 267557b952d6SSatish Balay /* read in other processors (except the last one) and ship out */ 267657b952d6SSatish Balay for (i=1; i<size-1; i++) { 267757b952d6SSatish Balay nz = procsnz[i]; 267857b952d6SSatish Balay vals = buf; 2679e5638eb3SBarry Smith ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 2680ca161407SBarry Smith ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,A->tag,comm);CHKERRQ(ierr); 268157b952d6SSatish Balay } 268257b952d6SSatish Balay /* the last proc */ 268357b952d6SSatish Balay if (size != 1){ 268457b952d6SSatish Balay nz = procsnz[i] - extra_rows; 2685cee3aa6bSSatish Balay vals = buf; 2686e5638eb3SBarry Smith ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 268757b952d6SSatish Balay for (i=0; i<extra_rows; i++) vals[nz+i] = 1.0; 2688ca161407SBarry Smith ierr = MPI_Send(vals,nz+extra_rows,MPIU_SCALAR,size-1,A->tag,comm);CHKERRQ(ierr); 268957b952d6SSatish Balay } 2690606d414cSSatish Balay ierr = PetscFree(procsnz);CHKERRQ(ierr); 2691d64ed03dSBarry Smith } else { 269257b952d6SSatish Balay /* receive numeric values */ 269387828ca2SBarry Smith ierr = PetscMalloc(nz*sizeof(PetscScalar),&buf);CHKERRQ(ierr); 269457b952d6SSatish Balay 269557b952d6SSatish Balay /* receive message of values*/ 269657b952d6SSatish Balay vals = buf; 2697cee3aa6bSSatish Balay mycols = ibuf; 2698ca161407SBarry Smith ierr = MPI_Recv(vals,nz,MPIU_SCALAR,0,A->tag,comm,&status);CHKERRQ(ierr); 2699ca161407SBarry Smith ierr = MPI_Get_count(&status,MPIU_SCALAR,&maxnz);CHKERRQ(ierr); 270029bbc08cSBarry Smith if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 270157b952d6SSatish Balay 270257b952d6SSatish Balay /* insert into matrix */ 270357b952d6SSatish Balay jj = rstart*bs; 2704cee3aa6bSSatish Balay for (i=0; i<m; i++) { 2705b48991e4SBarry Smith ierr = MatSetValues(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr); 270657b952d6SSatish Balay mycols += locrowlens[i]; 270757b952d6SSatish Balay vals += locrowlens[i]; 270857b952d6SSatish Balay jj++; 270957b952d6SSatish Balay } 271057b952d6SSatish Balay } 2711606d414cSSatish Balay ierr = PetscFree(locrowlens);CHKERRQ(ierr); 2712606d414cSSatish Balay ierr = PetscFree(buf);CHKERRQ(ierr); 2713606d414cSSatish Balay ierr = PetscFree(ibuf);CHKERRQ(ierr); 2714606d414cSSatish Balay ierr = PetscFree(rowners);CHKERRQ(ierr); 2715606d414cSSatish Balay ierr = PetscFree(dlens);CHKERRQ(ierr); 2716606d414cSSatish Balay ierr = PetscFree(mask);CHKERRQ(ierr); 27176d4a8577SBarry Smith ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 27186d4a8577SBarry Smith ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 271978ae41b4SKris Buschelman 272078ae41b4SKris Buschelman *newmat = A; 27213a40ed3dSBarry Smith PetscFunctionReturn(0); 272257b952d6SSatish Balay } 272357b952d6SSatish Balay 27244a2ae208SSatish Balay #undef __FUNCT__ 27254a2ae208SSatish Balay #define __FUNCT__ "MatMPIBAIJSetHashTableFactor" 2726133cdb44SSatish Balay /*@ 2727133cdb44SSatish Balay MatMPIBAIJSetHashTableFactor - Sets the factor required to compute the size of the HashTable. 2728133cdb44SSatish Balay 2729133cdb44SSatish Balay Input Parameters: 2730133cdb44SSatish Balay . mat - the matrix 2731133cdb44SSatish Balay . fact - factor 2732133cdb44SSatish Balay 2733fee21e36SBarry Smith Collective on Mat 2734fee21e36SBarry Smith 27358c890885SBarry Smith Level: advanced 27368c890885SBarry Smith 2737133cdb44SSatish Balay Notes: 2738133cdb44SSatish Balay This can also be set by the command line option: -mat_use_hash_table fact 2739133cdb44SSatish Balay 2740133cdb44SSatish Balay .keywords: matrix, hashtable, factor, HT 2741133cdb44SSatish Balay 2742133cdb44SSatish Balay .seealso: MatSetOption() 2743133cdb44SSatish Balay @*/ 2744329f5518SBarry Smith int MatMPIBAIJSetHashTableFactor(Mat mat,PetscReal fact) 2745133cdb44SSatish Balay { 27465bf65638SKris Buschelman int ierr,(*f)(Mat,PetscReal); 27475bf65638SKris Buschelman 27485bf65638SKris Buschelman PetscFunctionBegin; 27495bf65638SKris Buschelman ierr = PetscObjectQueryFunction((PetscObject)mat,"MatSetHashTableFactor_C",(void (**)(void))&f);CHKERRQ(ierr); 27505bf65638SKris Buschelman if (f) { 27515bf65638SKris Buschelman ierr = (*f)(mat,fact);CHKERRQ(ierr); 27525bf65638SKris Buschelman } 27535bf65638SKris Buschelman PetscFunctionReturn(0); 27545bf65638SKris Buschelman } 27555bf65638SKris Buschelman 27565bf65638SKris Buschelman #undef __FUNCT__ 27575bf65638SKris Buschelman #define __FUNCT__ "MatSetHashTableFactor_MPIBAIJ" 27585bf65638SKris Buschelman int MatSetHashTableFactor_MPIBAIJ(Mat mat,PetscReal fact) 27595bf65638SKris Buschelman { 276025fdafccSSatish Balay Mat_MPIBAIJ *baij; 2761133cdb44SSatish Balay 2762133cdb44SSatish Balay PetscFunctionBegin; 2763133cdb44SSatish Balay PetscValidHeaderSpecific(mat,MAT_COOKIE); 2764133cdb44SSatish Balay baij = (Mat_MPIBAIJ*)mat->data; 2765133cdb44SSatish Balay baij->ht_fact = fact; 2766133cdb44SSatish Balay PetscFunctionReturn(0); 2767133cdb44SSatish Balay } 2768f2a5309cSSatish Balay 27694a2ae208SSatish Balay #undef __FUNCT__ 27704a2ae208SSatish Balay #define __FUNCT__ "MatMPIBAIJGetSeqBAIJ" 2771268466fbSBarry Smith int MatMPIBAIJGetSeqBAIJ(Mat A,Mat *Ad,Mat *Ao,int *colmap[]) 2772f2a5309cSSatish Balay { 2773f2a5309cSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 2774f2a5309cSSatish Balay PetscFunctionBegin; 2775f2a5309cSSatish Balay *Ad = a->A; 2776f2a5309cSSatish Balay *Ao = a->B; 2777195d93cdSBarry Smith *colmap = a->garray; 2778f2a5309cSSatish Balay PetscFunctionReturn(0); 2779f2a5309cSSatish Balay } 2780